Query 004267
Match_columns 764
No_of_seqs 709 out of 5094
Neff 8.4
Searched_HMMs 46136
Date Thu Mar 28 20:28:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004267.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004267hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0730 AAA+-type ATPase [Post 100.0 3E-122 7E-127 999.9 46.3 681 15-758 2-683 (693)
2 KOG0733 Nuclear AAA ATPase (VC 100.0 1E-117 3E-122 946.7 44.7 540 203-757 185-777 (802)
3 TIGR01243 CDC48 AAA family ATP 100.0 2E-101 4E-106 914.3 66.7 709 30-757 3-718 (733)
4 KOG0736 Peroxisome assembly fa 100.0 1.2E-87 2.6E-92 734.2 45.9 602 133-758 303-941 (953)
5 KOG0735 AAA+-type ATPase [Post 100.0 7.4E-74 1.6E-78 619.9 37.6 455 240-710 429-893 (952)
6 COG0464 SpoVK ATPases of the A 100.0 2.5E-69 5.4E-74 615.8 40.6 489 226-763 2-492 (494)
7 KOG0741 AAA+-type ATPase [Post 100.0 6.8E-62 1.5E-66 511.7 37.3 602 30-662 10-683 (744)
8 COG1222 RPT1 ATP-dependent 26S 100.0 2.9E-62 6.3E-67 497.6 23.0 255 472-752 142-396 (406)
9 KOG0738 AAA+-type ATPase [Post 100.0 1.7E-54 3.8E-59 442.4 15.0 279 472-764 203-485 (491)
10 COG1222 RPT1 ATP-dependent 26S 100.0 1.7E-52 3.8E-57 426.2 25.1 246 201-463 144-392 (406)
11 KOG0728 26S proteasome regulat 100.0 3E-50 6.6E-55 388.4 16.7 264 474-763 140-403 (404)
12 KOG0727 26S proteasome regulat 100.0 4.8E-50 1E-54 387.4 17.9 251 474-750 148-398 (408)
13 KOG0733 Nuclear AAA ATPase (VC 100.0 1.3E-48 2.8E-53 418.3 23.1 272 196-468 499-774 (802)
14 KOG0734 AAA+-type ATPase conta 100.0 3.1E-49 6.7E-54 416.6 16.6 244 475-748 298-541 (752)
15 KOG0730 AAA+-type ATPase [Post 100.0 2.3E-48 5E-53 423.5 22.3 251 201-466 427-677 (693)
16 KOG0726 26S proteasome regulat 100.0 8.3E-49 1.8E-53 386.0 13.6 254 473-752 177-430 (440)
17 KOG0739 AAA+-type ATPase [Post 100.0 6.6E-49 1.4E-53 387.9 12.9 282 471-759 123-426 (439)
18 KOG0729 26S proteasome regulat 100.0 1.6E-48 3.4E-53 379.6 15.1 264 463-752 159-422 (435)
19 KOG0652 26S proteasome regulat 100.0 3.2E-48 7E-53 376.4 14.8 253 473-751 163-415 (424)
20 CHL00195 ycf46 Ycf46; Provisio 100.0 1.2E-45 2.5E-50 410.6 33.1 395 301-763 81-480 (489)
21 KOG0731 AAA+-type ATPase conta 100.0 5.5E-46 1.2E-50 417.6 19.4 249 476-751 306-556 (774)
22 KOG0736 Peroxisome assembly fa 100.0 4.8E-45 1E-49 400.1 22.3 269 199-468 663-937 (953)
23 KOG0737 AAA+-type ATPase [Post 100.0 1.9E-45 4.1E-50 377.6 16.5 270 477-752 88-363 (386)
24 PTZ00454 26S protease regulato 100.0 9.9E-45 2.1E-49 395.5 21.6 254 473-752 137-390 (398)
25 COG0465 HflB ATP-dependent Zn 100.0 1.3E-44 2.7E-49 401.2 17.5 247 475-748 144-390 (596)
26 COG1223 Predicted ATPase (AAA+ 100.0 1E-43 2.2E-48 345.4 15.0 245 474-752 114-359 (368)
27 PRK03992 proteasome-activating 100.0 6.3E-43 1.4E-47 383.9 22.6 256 471-752 121-376 (389)
28 PTZ00361 26 proteosome regulat 100.0 1.6E-42 3.5E-47 379.9 19.0 252 474-751 176-427 (438)
29 KOG0741 AAA+-type ATPase [Post 100.0 5.3E-43 1.2E-47 369.2 12.1 274 473-758 211-500 (744)
30 KOG0728 26S proteasome regulat 100.0 4.3E-41 9.4E-46 325.0 19.2 246 201-463 140-388 (404)
31 KOG0738 AAA+-type ATPase [Post 100.0 7.8E-41 1.7E-45 342.4 20.7 264 201-468 205-474 (491)
32 KOG0652 26S proteasome regulat 100.0 1.1E-40 2.3E-45 324.1 20.5 257 174-430 131-396 (424)
33 KOG0727 26S proteasome regulat 100.0 6.1E-41 1.3E-45 324.3 18.4 230 201-430 148-380 (408)
34 KOG0734 AAA+-type ATPase conta 100.0 1.4E-40 3E-45 351.3 20.5 229 201-430 297-525 (752)
35 KOG0651 26S proteasome regulat 100.0 1.5E-41 3.3E-46 338.6 11.8 249 476-750 127-375 (388)
36 KOG0726 26S proteasome regulat 100.0 4.6E-41 1E-45 331.4 14.3 246 201-463 178-426 (440)
37 KOG0735 AAA+-type ATPase [Post 100.0 9.8E-40 2.1E-44 355.0 23.1 228 204-431 663-890 (952)
38 KOG0732 AAA+-type ATPase conta 100.0 6.9E-40 1.5E-44 377.0 22.0 386 203-589 260-668 (1080)
39 COG1223 Predicted ATPase (AAA+ 100.0 7.1E-39 1.5E-43 311.7 25.3 303 133-463 50-355 (368)
40 TIGR01241 FtsH_fam ATP-depende 100.0 8.3E-40 1.8E-44 371.7 20.4 251 474-751 48-298 (495)
41 KOG0740 AAA+-type ATPase [Post 100.0 2.2E-40 4.8E-45 353.4 14.3 273 472-764 144-420 (428)
42 KOG0729 26S proteasome regulat 100.0 1.1E-39 2.4E-44 317.8 17.3 230 201-430 170-402 (435)
43 TIGR03689 pup_AAA proteasome A 100.0 3.1E-39 6.8E-44 358.0 21.0 252 473-748 174-478 (512)
44 TIGR01242 26Sp45 26S proteasom 100.0 3.8E-39 8.3E-44 353.0 21.0 250 473-748 114-363 (364)
45 CHL00176 ftsH cell division pr 100.0 2E-38 4.3E-43 363.4 19.4 246 476-748 178-423 (638)
46 PTZ00454 26S protease regulato 100.0 6.8E-37 1.5E-41 334.0 24.5 246 201-463 138-386 (398)
47 KOG0739 AAA+-type ATPase [Post 100.0 8.9E-38 1.9E-42 309.2 15.0 228 201-431 126-355 (439)
48 KOG0732 AAA+-type ATPase conta 100.0 1.1E-37 2.3E-42 359.1 14.8 264 476-752 260-529 (1080)
49 PRK10733 hflB ATP-dependent me 100.0 6.2E-37 1.3E-41 355.7 20.6 249 477-752 148-396 (644)
50 KOG0731 AAA+-type ATPase conta 100.0 1.3E-36 2.9E-41 342.1 22.1 229 203-432 306-539 (774)
51 CHL00206 ycf2 Ycf2; Provisiona 100.0 8E-37 1.7E-41 364.3 21.1 198 500-706 1615-1861(2281)
52 KOG0737 AAA+-type ATPase [Post 100.0 8E-37 1.7E-41 314.0 18.0 229 203-433 87-318 (386)
53 TIGR01243 CDC48 AAA family ATP 100.0 9.7E-36 2.1E-40 353.4 25.2 267 202-468 447-715 (733)
54 COG0464 SpoVK ATPases of the A 100.0 3.2E-35 7E-40 335.4 24.2 250 201-466 235-486 (494)
55 PRK03992 proteasome-activating 100.0 4.3E-35 9.3E-40 322.0 23.8 251 201-468 124-377 (389)
56 PTZ00361 26 proteosome regulat 100.0 2.4E-35 5.2E-40 323.4 20.7 246 201-463 176-424 (438)
57 PLN00020 ribulose bisphosphate 100.0 3.3E-35 7.2E-40 305.3 17.1 192 509-706 142-355 (413)
58 COG0465 HflB ATP-dependent Zn 100.0 1.7E-34 3.8E-39 320.5 20.1 230 203-433 145-377 (596)
59 TIGR02639 ClpA ATP-dependent C 100.0 2.8E-33 6E-38 331.2 30.9 435 205-707 179-716 (731)
60 PRK11034 clpA ATP-dependent Cl 100.0 3.3E-32 7.1E-37 317.2 30.8 447 206-707 184-720 (758)
61 CHL00195 ycf46 Ycf46; Provisio 100.0 1.4E-32 3E-37 306.0 24.5 242 203-467 223-467 (489)
62 TIGR01242 26Sp45 26S proteasom 100.0 3.6E-32 7.9E-37 297.9 26.7 245 201-462 115-362 (364)
63 KOG0651 26S proteasome regulat 100.0 2.7E-33 5.8E-38 279.7 13.3 229 201-429 125-356 (388)
64 TIGR01241 FtsH_fam ATP-depende 100.0 2.9E-32 6.3E-37 310.0 22.0 228 202-430 49-279 (495)
65 TIGR03689 pup_AAA proteasome A 100.0 7.3E-32 1.6E-36 299.4 22.4 221 201-427 175-411 (512)
66 CHL00176 ftsH cell division pr 100.0 5.8E-31 1.3E-35 301.9 21.6 227 203-430 178-407 (638)
67 KOG0740 AAA+-type ATPase [Post 100.0 1.9E-30 4.2E-35 277.3 16.4 261 201-468 146-409 (428)
68 TIGR03345 VI_ClpV1 type VI sec 100.0 1.1E-28 2.5E-33 293.3 30.7 454 204-707 183-835 (852)
69 PLN00020 ribulose bisphosphate 100.0 2.1E-29 4.6E-34 262.1 21.0 217 206-427 113-352 (413)
70 CHL00095 clpC Clp protease ATP 100.0 2.8E-28 6E-33 291.8 31.7 452 206-707 177-786 (821)
71 PRK10733 hflB ATP-dependent me 100.0 3.7E-29 8.1E-34 290.8 22.5 226 204-430 148-376 (644)
72 CHL00206 ycf2 Ycf2; Provisiona 100.0 3.1E-29 6.6E-34 300.0 20.3 201 227-433 1615-1864(2281)
73 TIGR03346 chaperone_ClpB ATP-d 100.0 5.9E-27 1.3E-31 281.1 34.8 453 206-707 171-830 (852)
74 PRK10865 protein disaggregatio 100.0 1.8E-27 3.9E-32 284.1 29.8 454 205-707 175-833 (857)
75 COG0542 clpA ATP-binding subun 100.0 5.5E-27 1.2E-31 266.9 27.0 453 206-706 168-758 (786)
76 KOG0744 AAA+-type ATPase [Post 99.9 5.1E-24 1.1E-28 214.3 7.6 187 479-667 140-342 (423)
77 CHL00181 cbbX CbbX; Provisiona 99.9 5.6E-23 1.2E-27 216.2 13.7 237 480-744 22-282 (287)
78 TIGR02881 spore_V_K stage V sp 99.9 3.8E-22 8.2E-27 208.7 14.6 214 480-707 5-243 (261)
79 TIGR02880 cbbX_cfxQ probable R 99.9 3E-22 6.4E-27 211.0 12.9 237 481-744 22-281 (284)
80 PF00004 AAA: ATPase family as 99.9 4.5E-22 9.8E-27 185.7 12.2 130 518-651 1-132 (132)
81 KOG0743 AAA+-type ATPase [Post 99.9 5.6E-22 1.2E-26 210.4 13.7 222 478-708 198-429 (457)
82 KOG0742 AAA+-type ATPase [Post 99.9 2E-21 4.2E-26 200.7 14.1 180 513-699 382-589 (630)
83 PF00004 AAA: ATPase family as 99.8 1.2E-19 2.7E-24 169.2 15.5 130 245-375 1-132 (132)
84 CHL00181 cbbX CbbX; Provisiona 99.8 4.9E-18 1.1E-22 178.8 20.0 212 208-430 23-258 (287)
85 TIGR02880 cbbX_cfxQ probable R 99.8 7.7E-18 1.7E-22 177.5 18.1 211 209-429 23-256 (284)
86 TIGR02881 spore_V_K stage V sp 99.8 3.9E-17 8.5E-22 170.9 20.5 212 207-429 5-241 (261)
87 TIGR00763 lon ATP-dependent pr 99.7 1.7E-17 3.7E-22 198.1 14.6 204 481-705 320-557 (775)
88 PF05496 RuvB_N: Holliday junc 99.7 2.8E-17 6.1E-22 161.7 13.3 188 478-698 21-225 (233)
89 TIGR02639 ClpA ATP-dependent C 99.7 5.1E-17 1.1E-21 193.0 13.7 223 479-748 180-429 (731)
90 KOG0742 AAA+-type ATPase [Post 99.7 1.6E-16 3.4E-21 164.7 15.4 177 241-422 383-588 (630)
91 KOG0744 AAA+-type ATPase [Post 99.7 4.3E-17 9.3E-22 164.7 10.3 149 239-389 174-340 (423)
92 KOG0743 AAA+-type ATPase [Post 99.7 2.3E-16 4.9E-21 168.0 16.0 177 206-390 199-384 (457)
93 PF05496 RuvB_N: Holliday junc 99.7 5.6E-16 1.2E-20 152.6 15.1 182 201-411 17-215 (233)
94 TIGR00635 ruvB Holliday juncti 99.7 6E-16 1.3E-20 166.1 16.2 192 479-703 2-210 (305)
95 KOG1051 Chaperone HSP104 and r 99.7 6E-15 1.3E-19 171.2 25.4 158 210-390 189-364 (898)
96 COG2256 MGS1 ATPase related to 99.7 1.8E-15 4E-20 158.4 16.7 174 478-696 21-211 (436)
97 PRK00080 ruvB Holliday junctio 99.7 1.1E-15 2.5E-20 165.3 15.9 194 478-704 22-232 (328)
98 PRK11034 clpA ATP-dependent Cl 99.6 6.2E-16 1.3E-20 181.2 11.6 177 514-702 206-409 (758)
99 COG2255 RuvB Holliday junction 99.6 5.7E-15 1.2E-19 147.7 14.4 192 478-702 23-231 (332)
100 PRK05342 clpX ATP-dependent pr 99.6 6.9E-15 1.5E-19 161.6 15.8 223 482-706 72-382 (412)
101 TIGR00763 lon ATP-dependent pr 99.6 1.5E-14 3.2E-19 173.0 18.1 164 208-389 320-505 (775)
102 COG2255 RuvB Holliday junction 99.6 9.7E-15 2.1E-19 146.1 13.4 182 201-411 19-217 (332)
103 PRK10787 DNA-binding ATP-depen 99.6 2.9E-14 6.3E-19 168.7 16.8 228 481-749 322-583 (784)
104 TIGR00382 clpX endopeptidase C 99.6 2.5E-14 5.4E-19 156.2 14.9 224 481-706 77-388 (413)
105 KOG2004 Mitochondrial ATP-depe 99.6 9.6E-15 2.1E-19 161.4 11.5 164 481-665 411-596 (906)
106 PRK00080 ruvB Holliday junctio 99.6 1.4E-13 3.1E-18 149.0 20.0 192 201-422 18-226 (328)
107 TIGR03345 VI_ClpV1 type VI sec 99.6 1.2E-14 2.6E-19 173.9 12.3 196 479-700 185-408 (852)
108 PRK10865 protein disaggregatio 99.6 1.3E-14 2.9E-19 174.0 12.7 164 479-668 176-357 (857)
109 TIGR02902 spore_lonB ATP-depen 99.6 3.2E-14 6.9E-19 162.5 14.9 209 478-747 62-331 (531)
110 TIGR00635 ruvB Holliday juncti 99.6 1.9E-13 4.2E-18 146.7 19.8 188 206-423 2-206 (305)
111 TIGR00390 hslU ATP-dependent p 99.5 6.5E-14 1.4E-18 150.4 15.8 176 482-661 13-342 (441)
112 PRK14962 DNA polymerase III su 99.5 6.3E-14 1.4E-18 156.9 16.2 182 478-697 11-221 (472)
113 COG0466 Lon ATP-dependent Lon 99.5 4.6E-14 1E-18 157.2 14.0 164 481-665 323-508 (782)
114 PRK14956 DNA polymerase III su 99.5 6.2E-14 1.4E-18 154.3 14.4 184 478-699 15-227 (484)
115 PRK07003 DNA polymerase III su 99.5 8.5E-14 1.8E-18 158.4 15.4 186 478-701 13-227 (830)
116 PRK07940 DNA polymerase III su 99.5 4.9E-14 1.1E-18 154.2 13.2 191 479-695 3-215 (394)
117 COG2256 MGS1 ATPase related to 99.5 2E-13 4.4E-18 143.2 16.6 176 201-414 17-209 (436)
118 TIGR02928 orc1/cdc6 family rep 99.5 2E-13 4.4E-18 150.4 17.6 221 481-750 15-276 (365)
119 PRK13342 recombination factor 99.5 1.6E-13 3.4E-18 153.0 16.9 181 478-700 9-202 (413)
120 PRK05201 hslU ATP-dependent pr 99.5 9.1E-14 2E-18 149.4 14.0 177 481-661 15-344 (443)
121 TIGR03346 chaperone_ClpB ATP-d 99.5 6E-14 1.3E-18 169.2 14.1 198 479-702 171-396 (852)
122 PRK12323 DNA polymerase III su 99.5 3.6E-14 7.8E-19 159.5 11.1 184 478-699 13-230 (700)
123 CHL00095 clpC Clp protease ATP 99.5 6.1E-14 1.3E-18 168.7 13.8 198 479-702 177-401 (821)
124 PRK14961 DNA polymerase III su 99.5 1.9E-13 4E-18 149.7 16.3 185 478-700 13-226 (363)
125 PRK04195 replication factor C 99.5 1.5E-13 3.4E-18 156.1 14.5 188 478-700 11-205 (482)
126 KOG2004 Mitochondrial ATP-depe 99.5 1.5E-13 3.2E-18 152.2 13.7 164 208-389 411-596 (906)
127 PRK06645 DNA polymerase III su 99.5 3.4E-13 7.5E-18 151.5 16.3 188 477-702 17-237 (507)
128 PF05673 DUF815: Protein of un 99.5 5.7E-13 1.2E-17 133.2 15.2 193 474-697 20-244 (249)
129 PRK14949 DNA polymerase III su 99.5 3.4E-13 7.4E-18 156.4 15.2 184 478-699 13-225 (944)
130 PRK00149 dnaA chromosomal repl 99.5 2.6E-13 5.6E-18 153.2 13.9 173 516-704 149-332 (450)
131 PRK00411 cdc6 cell division co 99.5 6.1E-13 1.3E-17 148.2 16.8 198 515-751 55-285 (394)
132 TIGR00362 DnaA chromosomal rep 99.5 3.9E-13 8.5E-18 149.9 14.6 172 516-704 137-320 (405)
133 PRK14960 DNA polymerase III su 99.5 3.9E-13 8.5E-18 151.7 13.1 185 478-700 12-225 (702)
134 PRK07994 DNA polymerase III su 99.5 5.6E-13 1.2E-17 152.7 14.4 184 478-699 13-225 (647)
135 PRK05563 DNA polymerase III su 99.4 1.2E-12 2.6E-17 150.2 16.3 186 478-701 13-227 (559)
136 TIGR02903 spore_lon_C ATP-depe 99.4 4.6E-12 9.9E-17 147.0 20.3 224 477-750 150-432 (615)
137 PRK14958 DNA polymerase III su 99.4 4.9E-13 1.1E-17 151.4 11.6 185 478-700 13-226 (509)
138 COG0466 Lon ATP-dependent Lon 99.4 7.8E-13 1.7E-17 147.5 12.3 164 208-389 323-508 (782)
139 PRK14964 DNA polymerase III su 99.4 1.3E-12 2.8E-17 145.7 13.9 186 478-701 10-224 (491)
140 PF02359 CDC48_N: Cell divisio 99.4 1.1E-12 2.4E-17 112.5 9.9 80 30-111 1-85 (87)
141 PRK12402 replication factor C 99.4 3.3E-12 7.1E-17 139.2 16.1 185 478-698 12-227 (337)
142 PRK08691 DNA polymerase III su 99.4 1.2E-12 2.6E-17 149.2 12.9 186 478-701 13-227 (709)
143 PRK14963 DNA polymerase III su 99.4 3.5E-12 7.5E-17 144.1 16.5 185 477-699 10-222 (504)
144 PRK07764 DNA polymerase III su 99.4 1.4E-12 3.1E-17 154.2 13.9 184 478-699 12-226 (824)
145 PRK14952 DNA polymerase III su 99.4 2.2E-12 4.7E-17 147.2 14.3 186 478-701 10-226 (584)
146 PRK14959 DNA polymerase III su 99.4 2.1E-12 4.5E-17 146.7 13.8 183 477-697 12-223 (624)
147 PRK14088 dnaA chromosomal repl 99.4 2.5E-12 5.3E-17 143.9 13.4 172 516-703 131-314 (440)
148 PRK13341 recombination factor 99.4 4E-12 8.7E-17 148.7 15.5 181 478-700 25-223 (725)
149 PRK06893 DNA replication initi 99.4 5.6E-12 1.2E-16 129.2 14.7 160 517-698 41-207 (229)
150 KOG2028 ATPase related to the 99.4 6.6E-12 1.4E-16 129.1 14.9 161 516-704 163-347 (554)
151 PRK14951 DNA polymerase III su 99.4 3.9E-12 8.5E-17 145.6 14.8 186 478-701 13-232 (618)
152 TIGR02397 dnaX_nterm DNA polym 99.4 4.5E-12 9.8E-17 139.2 14.3 186 477-700 10-224 (355)
153 COG0488 Uup ATPase components 99.4 8E-12 1.7E-16 141.1 16.5 62 288-363 158-219 (530)
154 PRK12422 chromosomal replicati 99.4 4.5E-12 9.7E-17 141.4 14.3 168 516-699 142-318 (445)
155 PTZ00112 origin recognition co 99.4 9.3E-12 2E-16 142.2 16.9 190 518-751 784-1009(1164)
156 PRK07133 DNA polymerase III su 99.4 7.1E-12 1.5E-16 144.4 16.0 192 477-700 14-225 (725)
157 PRK04195 replication factor C 99.4 1.8E-11 3.9E-16 139.2 19.1 181 201-410 7-195 (482)
158 PRK14957 DNA polymerase III su 99.4 5.7E-12 1.2E-16 142.5 14.3 185 478-700 13-226 (546)
159 TIGR02640 gas_vesic_GvpN gas v 99.4 5.5E-12 1.2E-16 131.9 13.1 132 515-665 21-198 (262)
160 PRK14969 DNA polymerase III su 99.4 4.7E-12 1E-16 144.4 13.4 185 478-700 13-226 (527)
161 TIGR03420 DnaA_homol_Hda DnaA 99.4 7.4E-12 1.6E-16 128.3 13.7 166 514-704 37-211 (226)
162 PLN03025 replication factor C 99.3 8.1E-12 1.8E-16 134.7 14.2 180 478-696 10-202 (319)
163 PRK14962 DNA polymerase III su 99.3 2.6E-11 5.5E-16 136.0 18.6 177 201-411 7-212 (472)
164 PHA02544 44 clamp loader, smal 99.3 5.6E-12 1.2E-16 136.1 13.0 155 478-665 18-173 (316)
165 PRK14956 DNA polymerase III su 99.3 2.3E-11 5.1E-16 134.1 17.9 178 201-412 11-217 (484)
166 PRK14970 DNA polymerase III su 99.3 9.9E-12 2.2E-16 136.9 14.7 191 477-699 13-214 (367)
167 PRK14953 DNA polymerase III su 99.3 1.2E-11 2.5E-16 139.4 15.4 187 477-701 12-227 (486)
168 PRK14086 dnaA chromosomal repl 99.3 9.2E-12 2E-16 140.9 14.4 171 517-704 316-498 (617)
169 PRK07940 DNA polymerase III su 99.3 2.9E-11 6.2E-16 132.5 17.9 191 206-419 3-215 (394)
170 PRK07003 DNA polymerase III su 99.3 4.1E-11 8.8E-16 136.8 18.7 179 201-413 9-216 (830)
171 PRK10787 DNA-binding ATP-depen 99.3 3.1E-11 6.6E-16 143.2 18.5 201 208-427 322-556 (784)
172 PRK05896 DNA polymerase III su 99.3 7.5E-12 1.6E-16 141.5 12.7 185 478-700 13-226 (605)
173 PRK14965 DNA polymerase III su 99.3 9.3E-12 2E-16 143.6 13.4 182 478-697 13-223 (576)
174 PRK12323 DNA polymerase III su 99.3 2.9E-11 6.3E-16 136.4 16.3 185 201-420 9-227 (700)
175 PRK13342 recombination factor 99.3 6.7E-11 1.5E-15 132.0 18.8 171 201-410 5-189 (413)
176 KOG0989 Replication factor C, 99.3 1.2E-11 2.6E-16 125.5 11.2 188 477-700 32-236 (346)
177 PRK06305 DNA polymerase III su 99.3 2.1E-11 4.6E-16 136.5 14.2 183 478-698 14-226 (451)
178 PRK06647 DNA polymerase III su 99.3 2E-11 4.3E-16 139.7 13.3 184 477-698 12-224 (563)
179 PRK05342 clpX ATP-dependent pr 99.3 1.5E-10 3.2E-15 127.5 19.6 219 209-429 72-381 (412)
180 PRK09111 DNA polymerase III su 99.3 4.5E-11 9.7E-16 137.3 15.7 191 478-700 21-239 (598)
181 PF05673 DUF815: Protein of un 99.3 2.2E-10 4.7E-15 114.8 18.5 167 201-395 20-213 (249)
182 COG1474 CDC6 Cdc6-related prot 99.3 9.3E-11 2E-15 127.3 17.1 196 515-752 42-269 (366)
183 PRK08084 DNA replication initi 99.3 4.4E-11 9.5E-16 123.0 13.9 158 516-698 46-213 (235)
184 PRK08903 DnaA regulatory inact 99.3 5.7E-11 1.2E-15 121.9 14.6 175 514-746 41-224 (227)
185 TIGR02902 spore_lonB ATP-depen 99.3 6.4E-11 1.4E-15 135.5 16.6 199 201-428 58-314 (531)
186 TIGR00390 hslU ATP-dependent p 99.3 2.8E-11 6.1E-16 130.3 12.7 176 209-386 13-343 (441)
187 TIGR02928 orc1/cdc6 family rep 99.3 2.8E-10 6.1E-15 125.5 21.2 201 208-428 15-256 (365)
188 PRK14087 dnaA chromosomal repl 99.3 2.8E-11 6E-16 135.6 13.3 173 516-705 142-330 (450)
189 PRK08727 hypothetical protein; 99.3 7.4E-11 1.6E-15 121.1 15.3 157 516-697 42-207 (233)
190 COG1219 ClpX ATP-dependent pro 99.3 1.1E-10 2.4E-15 118.7 15.5 132 481-615 61-203 (408)
191 KOG2028 ATPase related to the 99.3 1.1E-10 2.4E-15 120.2 15.7 190 202-429 132-348 (554)
192 PLN03025 replication factor C 99.3 1.4E-10 3.1E-15 125.1 17.6 174 201-409 6-192 (319)
193 PRK14961 DNA polymerase III su 99.3 1.7E-10 3.6E-15 126.5 18.2 186 201-421 9-223 (363)
194 TIGR01650 PD_CobS cobaltochela 99.3 2E-11 4.4E-16 128.5 10.4 176 511-700 60-282 (327)
195 PRK08451 DNA polymerase III su 99.3 8.3E-11 1.8E-15 132.5 15.8 187 478-702 11-226 (535)
196 TIGR03420 DnaA_homol_Hda DnaA 99.3 2.9E-10 6.3E-15 116.5 18.7 186 206-424 13-207 (226)
197 PRK00440 rfc replication facto 99.2 7.8E-11 1.7E-15 127.3 15.0 184 478-700 14-209 (319)
198 PRK14948 DNA polymerase III su 99.2 6.8E-11 1.5E-15 136.8 15.3 182 477-696 12-224 (620)
199 PHA02544 44 clamp loader, smal 99.2 1.2E-10 2.5E-15 125.8 16.2 158 201-388 14-172 (316)
200 PRK00149 dnaA chromosomal repl 99.2 8.5E-11 1.8E-15 132.8 15.7 156 243-410 149-315 (450)
201 PRK05201 hslU ATP-dependent pr 99.2 3.5E-11 7.6E-16 129.6 11.6 176 209-386 16-345 (443)
202 PRK06645 DNA polymerase III su 99.2 3E-10 6.5E-15 127.9 19.4 194 201-423 14-234 (507)
203 PRK05642 DNA replication initi 99.2 1.6E-10 3.4E-15 118.8 15.6 159 516-699 46-213 (234)
204 PRK14949 DNA polymerase III su 99.2 3.3E-10 7.1E-15 132.0 19.9 184 201-419 9-221 (944)
205 PRK14960 DNA polymerase III su 99.2 2.5E-10 5.5E-15 129.3 18.5 186 201-421 8-222 (702)
206 PRK00411 cdc6 cell division co 99.2 7.9E-10 1.7E-14 123.2 22.3 201 208-427 30-263 (394)
207 PRK14955 DNA polymerase III su 99.2 3.8E-11 8.1E-16 133.1 10.9 186 478-701 13-235 (397)
208 PRK12402 replication factor C 99.2 6.3E-10 1.4E-14 121.3 20.4 180 201-409 8-218 (337)
209 COG2607 Predicted ATPase (AAA+ 99.2 2.4E-10 5.2E-15 112.1 15.0 195 473-698 52-277 (287)
210 PRK06893 DNA replication initi 99.2 1.2E-10 2.5E-15 119.4 13.6 150 243-412 40-198 (229)
211 TIGR00362 DnaA chromosomal rep 99.2 2.1E-10 4.6E-15 128.0 16.6 168 242-422 136-314 (405)
212 PRK07994 DNA polymerase III su 99.2 4.9E-10 1.1E-14 128.8 19.6 179 201-413 9-216 (647)
213 PRK13407 bchI magnesium chelat 99.2 7.9E-11 1.7E-15 126.0 11.5 160 477-665 4-216 (334)
214 PRK06620 hypothetical protein; 99.2 1.4E-10 3E-15 117.2 12.7 143 516-697 45-192 (214)
215 PRK14088 dnaA chromosomal repl 99.2 1.7E-10 3.6E-15 129.2 14.6 155 243-410 131-298 (440)
216 PRK14954 DNA polymerase III su 99.2 1.3E-10 2.9E-15 133.7 13.7 186 478-701 13-235 (620)
217 cd00009 AAA The AAA+ (ATPases 99.2 4.2E-10 9.1E-15 106.0 14.9 121 241-374 18-150 (151)
218 TIGR00382 clpX endopeptidase C 99.2 4.6E-10 9.9E-15 122.9 16.8 218 209-428 78-386 (413)
219 cd00009 AAA The AAA+ (ATPases 99.2 1.3E-10 2.7E-15 109.6 10.7 122 514-651 18-151 (151)
220 PRK14963 DNA polymerase III su 99.2 1.1E-09 2.3E-14 124.1 20.0 177 201-411 7-211 (504)
221 PRK08084 DNA replication initi 99.2 1E-09 2.2E-14 113.0 17.9 149 242-412 45-204 (235)
222 PRK14958 DNA polymerase III su 99.2 5E-10 1.1E-14 127.0 17.1 188 201-423 9-225 (509)
223 PRK14964 DNA polymerase III su 99.2 8.4E-10 1.8E-14 123.3 18.5 188 201-423 6-222 (491)
224 PRK08691 DNA polymerase III su 99.2 7.6E-10 1.6E-14 126.6 18.1 188 201-423 9-225 (709)
225 PRK14950 DNA polymerase III su 99.2 1.7E-10 3.8E-15 133.8 13.2 184 477-698 12-225 (585)
226 PTZ00112 origin recognition co 99.2 8.8E-10 1.9E-14 126.4 18.3 181 208-408 755-969 (1164)
227 COG2812 DnaX DNA polymerase II 99.2 1.5E-10 3.2E-15 128.8 11.8 193 478-702 13-228 (515)
228 PRK14086 dnaA chromosomal repl 99.2 5.2E-10 1.1E-14 126.8 16.1 158 243-410 315-481 (617)
229 PRK14971 DNA polymerase III su 99.2 4.6E-10 9.9E-15 130.0 15.9 184 478-699 14-227 (614)
230 PRK14959 DNA polymerase III su 99.1 7.9E-10 1.7E-14 125.9 17.2 178 201-412 9-215 (624)
231 PF00308 Bac_DnaA: Bacterial d 99.1 1.5E-10 3.3E-15 117.5 10.3 168 517-701 36-215 (219)
232 COG1224 TIP49 DNA helicase TIP 99.1 1.2E-09 2.6E-14 112.8 16.7 82 622-706 322-416 (450)
233 TIGR00678 holB DNA polymerase 99.1 4.5E-10 9.7E-15 111.7 13.3 143 514-685 13-183 (188)
234 PF00308 Bac_DnaA: Bacterial d 99.1 2.3E-09 5E-14 108.9 18.5 155 243-409 35-200 (219)
235 PRK07764 DNA polymerase III su 99.1 1.4E-09 3E-14 129.1 19.3 175 201-409 8-213 (824)
236 TIGR02640 gas_vesic_GvpN gas v 99.1 8.3E-10 1.8E-14 115.5 15.5 133 241-389 20-198 (262)
237 PRK14952 DNA polymerase III su 99.1 2.2E-09 4.7E-14 122.9 19.9 186 201-421 6-222 (584)
238 PRK12422 chromosomal replicati 99.1 8.1E-10 1.8E-14 123.4 16.1 157 243-411 142-307 (445)
239 PRK14957 DNA polymerase III su 99.1 2.9E-09 6.3E-14 120.7 19.8 185 201-420 9-222 (546)
240 smart00382 AAA ATPases associa 99.1 3.2E-10 7E-15 105.9 10.2 126 516-652 3-147 (148)
241 COG0714 MoxR-like ATPases [Gen 99.1 4.3E-10 9.4E-15 121.8 12.6 133 514-666 42-204 (329)
242 PRK05896 DNA polymerase III su 99.1 1.4E-09 3.1E-14 123.3 17.0 176 201-410 9-213 (605)
243 PRK08903 DnaA regulatory inact 99.1 3.8E-09 8.2E-14 108.4 18.6 178 204-421 14-202 (227)
244 PRK13341 recombination factor 99.1 2E-09 4.4E-14 126.3 18.5 182 201-421 21-220 (725)
245 PHA02244 ATPase-like protein 99.1 1E-09 2.2E-14 116.8 14.4 125 515-656 119-265 (383)
246 KOG1969 DNA replication checkp 99.1 1.3E-09 2.8E-14 121.8 15.5 168 513-705 324-518 (877)
247 CHL00081 chlI Mg-protoporyphyr 99.1 5.9E-10 1.3E-14 119.5 12.4 161 476-665 12-232 (350)
248 PF07724 AAA_2: AAA domain (Cd 99.1 1.4E-10 2.9E-15 112.8 6.9 113 514-631 2-131 (171)
249 KOG0989 Replication factor C, 99.1 1.4E-09 3E-14 110.7 14.3 178 201-410 29-223 (346)
250 TIGR02030 BchI-ChlI magnesium 99.1 5.1E-10 1.1E-14 120.0 11.9 155 479-665 2-219 (337)
251 PRK05563 DNA polymerase III su 99.1 3E-09 6.6E-14 122.3 19.0 187 201-422 9-224 (559)
252 PF07728 AAA_5: AAA domain (dy 99.1 3.1E-11 6.7E-16 113.8 2.0 109 517-643 1-139 (139)
253 PRK14970 DNA polymerase III su 99.1 3.8E-09 8.2E-14 116.5 18.9 175 201-409 10-201 (367)
254 PRK14951 DNA polymerase III su 99.1 2.8E-09 6.1E-14 122.4 18.3 185 201-420 9-227 (618)
255 TIGR02397 dnaX_nterm DNA polym 99.1 2.8E-09 6E-14 117.1 17.7 175 201-409 7-210 (355)
256 PRK14969 DNA polymerase III su 99.1 1.8E-09 4E-14 123.2 16.7 187 201-422 9-224 (527)
257 PRK07133 DNA polymerase III su 99.1 4.1E-09 8.9E-14 121.9 19.3 182 201-410 11-212 (725)
258 PRK11331 5-methylcytosine-spec 99.1 5.9E-10 1.3E-14 121.7 11.7 121 515-651 194-357 (459)
259 COG1123 ATPase components of v 99.1 2.3E-09 4.9E-14 119.2 16.0 57 291-357 162-218 (539)
260 PRK08727 hypothetical protein; 99.1 4.9E-09 1.1E-13 107.7 17.5 147 243-411 42-198 (233)
261 COG5271 MDN1 AAA ATPase contai 99.1 3.7E-09 8E-14 124.8 18.1 132 241-388 887-1046(4600)
262 TIGR03015 pepcterm_ATPase puta 99.1 2.1E-09 4.5E-14 113.3 15.0 195 513-749 40-267 (269)
263 PRK00440 rfc replication facto 99.1 5.4E-09 1.2E-13 112.9 18.3 175 201-410 10-196 (319)
264 PRK05564 DNA polymerase III su 99.1 1.8E-09 3.9E-14 116.2 14.4 172 479-688 2-185 (313)
265 TIGR02903 spore_lon_C ATP-depe 99.1 1.2E-08 2.6E-13 118.8 22.0 179 202-407 148-385 (615)
266 PRK09087 hypothetical protein; 99.1 9.4E-10 2E-14 112.1 11.3 135 517-684 46-186 (226)
267 PRK14953 DNA polymerase III su 99.1 5.9E-09 1.3E-13 117.7 18.8 185 201-420 9-222 (486)
268 COG0593 DnaA ATPase involved i 99.0 1.9E-09 4.1E-14 116.7 13.7 175 515-706 113-298 (408)
269 PRK09112 DNA polymerase III su 99.0 2.4E-09 5.2E-14 116.0 14.5 190 477-699 19-245 (351)
270 PRK06305 DNA polymerase III su 99.0 5.8E-09 1.2E-13 117.0 18.1 175 201-409 10-214 (451)
271 PRK05642 DNA replication initi 99.0 6.7E-09 1.5E-13 106.7 17.0 147 242-410 45-201 (234)
272 PRK06647 DNA polymerase III su 99.0 7.1E-09 1.5E-13 118.8 18.9 186 201-421 9-223 (563)
273 COG0542 clpA ATP-binding subun 99.0 1.1E-09 2.3E-14 126.5 11.6 144 513-668 189-349 (786)
274 KOG0745 Putative ATP-dependent 99.0 6.7E-09 1.5E-13 109.8 16.3 100 516-615 227-332 (564)
275 TIGR00764 lon_rel lon-related 99.0 1.4E-09 3E-14 126.0 12.4 87 473-574 10-106 (608)
276 TIGR01650 PD_CobS cobaltochela 99.0 6.7E-10 1.5E-14 117.1 8.7 137 240-390 62-234 (327)
277 PRK14965 DNA polymerase III su 99.0 5.9E-09 1.3E-13 120.5 17.2 176 201-410 9-213 (576)
278 PRK14087 dnaA chromosomal repl 99.0 5.7E-09 1.2E-13 117.0 16.4 168 243-423 142-324 (450)
279 TIGR02442 Cob-chelat-sub cobal 99.0 1.8E-09 3.9E-14 126.4 12.7 155 479-665 2-214 (633)
280 PHA02244 ATPase-like protein 99.0 1.3E-08 2.8E-13 108.5 17.5 122 241-378 118-263 (383)
281 smart00382 AAA ATPases associa 99.0 1.9E-09 4.1E-14 100.6 10.1 128 242-376 2-147 (148)
282 KOG0927 Predicted transporter 99.0 6.2E-09 1.3E-13 113.3 14.8 30 237-266 96-125 (614)
283 COG1474 CDC6 Cdc6-related prot 99.0 2.8E-08 6.1E-13 108.0 19.5 200 209-430 18-249 (366)
284 COG5271 MDN1 AAA ATPase contai 99.0 2.7E-08 5.9E-13 117.8 20.0 136 512-665 1540-1703(4600)
285 PRK14954 DNA polymerase III su 99.0 1.7E-08 3.7E-13 116.4 18.3 182 201-410 9-221 (620)
286 PRK09111 DNA polymerase III su 99.0 2.5E-08 5.5E-13 114.9 19.5 191 201-420 17-235 (598)
287 PRK14948 DNA polymerase III su 99.0 2.5E-08 5.3E-13 115.7 19.6 177 201-411 9-216 (620)
288 PRK06620 hypothetical protein; 99.0 5E-09 1.1E-13 105.9 12.2 133 243-411 45-183 (214)
289 PRK14955 DNA polymerase III su 99.0 8.1E-09 1.7E-13 114.6 15.0 176 201-410 9-221 (397)
290 PRK08451 DNA polymerase III su 99.0 2.5E-08 5.5E-13 112.5 19.0 188 201-423 7-223 (535)
291 PRK07471 DNA polymerase III su 99.0 4.8E-09 1E-13 114.2 12.6 174 478-685 16-230 (365)
292 PRK10636 putative ABC transpor 98.9 2.7E-09 5.9E-14 125.5 10.6 31 236-266 21-51 (638)
293 PRK04132 replication factor C 98.9 1.4E-08 3E-13 119.9 16.0 156 518-699 567-736 (846)
294 PRK05707 DNA polymerase III su 98.9 1.6E-08 3.4E-13 108.7 14.7 147 514-685 21-195 (328)
295 PRK13549 xylose transporter AT 98.9 6.4E-09 1.4E-13 119.6 12.3 32 236-267 25-56 (506)
296 PF07728 AAA_5: AAA domain (dy 98.9 1E-09 2.2E-14 103.4 4.4 109 244-367 1-139 (139)
297 PRK14950 DNA polymerase III su 98.9 4.1E-08 8.9E-13 114.1 18.6 185 201-420 9-223 (585)
298 PRK07399 DNA polymerase III su 98.9 4.7E-09 1E-13 112.1 9.9 183 479-696 2-223 (314)
299 PRK09700 D-allose transporter 98.9 8.2E-09 1.8E-13 118.9 11.9 31 236-266 25-55 (510)
300 PRK13407 bchI magnesium chelat 98.9 7.1E-09 1.5E-13 111.1 10.4 159 203-388 3-215 (334)
301 COG1220 HslU ATP-dependent pro 98.9 8.5E-09 1.8E-13 105.9 10.0 83 576-662 252-346 (444)
302 PRK10938 putative molybdenum t 98.9 4E-09 8.6E-14 120.9 8.7 31 236-266 23-53 (490)
303 PRK11147 ABC transporter ATPas 98.9 4.8E-09 1E-13 123.7 9.6 31 236-266 23-53 (635)
304 PRK15439 autoinducer 2 ABC tra 98.9 9.8E-09 2.1E-13 118.1 11.9 31 236-266 31-61 (510)
305 PRK09087 hypothetical protein; 98.9 3.7E-08 8.1E-13 100.4 14.5 140 242-409 44-187 (226)
306 PRK10982 galactose/methyl gala 98.9 1.1E-08 2.3E-13 117.3 11.6 31 236-266 18-48 (491)
307 KOG1969 DNA replication checkp 98.9 5.4E-08 1.2E-12 109.2 16.4 155 240-409 324-502 (877)
308 COG0714 MoxR-like ATPases [Gen 98.9 2.4E-08 5.1E-13 108.3 13.5 129 241-386 42-200 (329)
309 PF01078 Mg_chelatase: Magnesi 98.8 1.1E-09 2.3E-14 107.9 2.4 142 480-655 2-205 (206)
310 PRK10762 D-ribose transporter 98.8 1.2E-08 2.7E-13 117.1 11.7 31 236-266 24-54 (501)
311 COG0470 HolB ATPase involved i 98.8 1.9E-08 4.1E-13 108.9 12.4 125 517-662 26-178 (325)
312 TIGR00368 Mg chelatase-related 98.8 2.8E-08 6E-13 112.2 13.2 143 479-655 190-394 (499)
313 TIGR03269 met_CoM_red_A2 methy 98.8 1.9E-08 4.2E-13 116.1 12.2 31 236-266 20-50 (520)
314 PRK11331 5-methylcytosine-spec 98.8 4.7E-08 1E-12 107.0 14.4 121 242-375 194-357 (459)
315 COG0593 DnaA ATPase involved i 98.8 9.6E-08 2.1E-12 103.6 16.6 154 242-409 113-278 (408)
316 PRK13531 regulatory ATPase Rav 98.8 1.7E-08 3.7E-13 111.3 10.8 135 514-664 38-193 (498)
317 PF06068 TIP49: TIP49 C-termin 98.8 1.3E-08 2.8E-13 107.2 9.4 65 481-553 24-90 (398)
318 TIGR02655 circ_KaiC circadian 98.8 2.4E-07 5.1E-12 105.5 20.3 78 511-588 259-367 (484)
319 COG2607 Predicted ATPase (AAA+ 98.8 4.1E-07 8.9E-12 89.8 18.8 168 201-396 53-246 (287)
320 PRK08058 DNA polymerase III su 98.8 3.5E-08 7.5E-13 106.7 12.7 149 479-663 3-180 (329)
321 PRK15064 ABC transporter ATP-b 98.8 3.8E-08 8.1E-13 113.9 13.5 31 236-266 21-51 (530)
322 PRK09112 DNA polymerase III su 98.8 2.3E-07 4.9E-12 100.7 18.5 182 203-413 18-236 (351)
323 smart00350 MCM minichromosome 98.8 2.9E-08 6.4E-13 113.5 12.2 131 516-666 237-401 (509)
324 PF07724 AAA_2: AAA domain (Cd 98.8 2.1E-08 4.6E-13 97.5 9.4 112 241-354 2-130 (171)
325 PRK15134 microcin C ABC transp 98.8 3E-08 6.6E-13 114.7 12.0 32 236-267 29-60 (529)
326 TIGR02633 xylG D-xylose ABC tr 98.8 3.2E-08 7E-13 113.7 12.2 32 236-267 21-52 (500)
327 PF07726 AAA_3: ATPase family 98.8 1.9E-09 4.1E-14 97.3 1.5 104 517-643 1-129 (131)
328 smart00763 AAA_PrkA PrkA AAA d 98.8 3.5E-08 7.6E-13 105.3 11.2 162 482-668 52-330 (361)
329 PRK14971 DNA polymerase III su 98.8 2.6E-07 5.7E-12 107.3 19.0 175 201-409 10-214 (614)
330 PLN03073 ABC transporter F fam 98.8 2.4E-08 5.2E-13 118.1 10.6 30 236-265 197-226 (718)
331 CHL00081 chlI Mg-protoporyphyr 98.8 6.4E-08 1.4E-12 103.9 12.8 160 203-388 12-231 (350)
332 KOG0066 eIF2-interacting prote 98.8 2E-07 4.2E-12 98.6 15.8 31 236-266 284-314 (807)
333 COG2812 DnaX DNA polymerase II 98.8 5.5E-08 1.2E-12 108.5 12.4 194 201-423 9-225 (515)
334 PRK11288 araG L-arabinose tran 98.7 3.5E-08 7.7E-13 113.3 11.2 31 236-266 24-54 (501)
335 TIGR02030 BchI-ChlI magnesium 98.7 8.6E-08 1.9E-12 103.0 13.3 155 206-388 2-218 (337)
336 PRK06964 DNA polymerase III su 98.7 3.6E-08 7.7E-13 105.9 10.3 133 513-664 19-203 (342)
337 TIGR02031 BchD-ChlD magnesium 98.7 1.1E-07 2.5E-12 110.1 15.3 132 516-666 17-175 (589)
338 TIGR00678 holB DNA polymerase 98.7 1.4E-07 3E-12 93.8 13.6 142 242-409 14-183 (188)
339 PRK13409 putative ATPase RIL; 98.7 3.5E-08 7.5E-13 114.6 10.6 29 239-267 96-124 (590)
340 TIGR00602 rad24 checkpoint pro 98.7 1.8E-07 3.8E-12 107.9 15.5 189 201-409 77-315 (637)
341 COG4172 ABC-type uncharacteriz 98.7 9.7E-07 2.1E-11 93.2 19.3 109 236-354 30-218 (534)
342 PRK11819 putative ABC transpor 98.7 6.8E-08 1.5E-12 112.3 11.3 31 236-266 27-57 (556)
343 COG1224 TIP49 DNA helicase TIP 98.7 7.6E-07 1.7E-11 92.5 17.5 62 208-280 39-105 (450)
344 COG1219 ClpX ATP-dependent pro 98.7 4.5E-08 9.8E-13 99.9 8.5 97 243-339 98-203 (408)
345 PRK05564 DNA polymerase III su 98.7 6.7E-07 1.5E-11 96.3 17.9 169 206-409 2-182 (313)
346 COG1116 TauB ABC-type nitrate/ 98.7 7.4E-08 1.6E-12 96.6 9.5 113 236-361 23-195 (248)
347 PRK08116 hypothetical protein; 98.7 4.4E-08 9.5E-13 102.5 8.2 123 515-654 114-251 (268)
348 PRK07471 DNA polymerase III su 98.7 7.8E-07 1.7E-11 97.0 18.0 179 203-412 14-233 (365)
349 TIGR00602 rad24 checkpoint pro 98.7 1.8E-07 3.8E-12 108.0 13.4 199 478-703 81-329 (637)
350 KOG0062 ATPase component of AB 98.7 1.1E-06 2.4E-11 95.5 18.3 110 236-359 100-260 (582)
351 PRK10261 glutathione transport 98.6 8.6E-08 1.9E-12 112.8 10.6 32 236-267 36-67 (623)
352 PRK09862 putative ATP-dependen 98.6 2.9E-07 6.2E-12 103.6 14.2 122 515-655 210-391 (506)
353 TIGR03719 ABC_ABC_ChvD ATP-bin 98.6 7.4E-08 1.6E-12 112.0 9.6 31 236-266 25-55 (552)
354 KOG1942 DNA helicase, TBP-inte 98.6 5.3E-07 1.2E-11 91.0 14.0 40 514-553 63-104 (456)
355 PF01078 Mg_chelatase: Magnesi 98.6 4E-08 8.6E-13 96.8 5.5 46 207-267 2-47 (206)
356 PRK11608 pspF phage shock prot 98.6 1.1E-07 2.4E-12 102.7 9.0 169 515-702 29-240 (326)
357 PRK13531 regulatory ATPase Rav 98.6 3.4E-07 7.3E-12 101.2 12.7 136 240-388 37-193 (498)
358 KOG1514 Origin recognition com 98.6 6.2E-07 1.3E-11 100.7 14.7 204 517-752 424-659 (767)
359 PF05621 TniB: Bacterial TniB 98.6 4.9E-07 1.1E-11 93.9 13.0 177 515-706 61-273 (302)
360 TIGR02974 phageshock_pspF psp 98.6 2.4E-07 5.2E-12 99.9 11.2 169 515-702 22-233 (329)
361 COG1120 FepC ABC-type cobalami 98.6 1.3E-07 2.7E-12 96.7 8.2 114 236-362 22-204 (258)
362 PF07726 AAA_3: ATPase family 98.6 2.4E-08 5.1E-13 90.3 2.5 102 244-363 1-127 (131)
363 PRK09302 circadian clock prote 98.6 2E-06 4.4E-11 98.9 19.1 78 511-588 269-377 (509)
364 COG0470 HolB ATPase involved i 98.6 3.7E-07 7.9E-12 98.9 12.3 122 244-383 26-175 (325)
365 PRK06871 DNA polymerase III su 98.6 6.6E-07 1.4E-11 95.6 13.6 128 514-664 23-178 (325)
366 COG1220 HslU ATP-dependent pro 98.6 5.5E-07 1.2E-11 92.8 12.1 82 303-386 252-346 (444)
367 PF13177 DNA_pol3_delta2: DNA 98.6 1.3E-07 2.7E-12 91.5 6.9 118 513-652 17-161 (162)
368 KOG0991 Replication factor C, 98.5 6.8E-07 1.5E-11 87.6 11.7 133 201-362 20-161 (333)
369 PRK05707 DNA polymerase III su 98.5 1.3E-06 2.8E-11 93.9 15.2 148 242-411 22-197 (328)
370 PRK07993 DNA polymerase III su 98.5 5.3E-07 1.1E-11 97.2 12.1 148 513-686 22-197 (334)
371 PF05621 TniB: Bacterial TniB 98.5 2.6E-06 5.7E-11 88.5 16.7 200 210-432 36-275 (302)
372 TIGR01817 nifA Nif-specific re 98.5 2.5E-07 5.4E-12 107.1 10.2 197 478-704 193-430 (534)
373 PRK15424 propionate catabolism 98.5 1.8E-07 3.9E-12 106.4 8.4 196 479-702 217-465 (538)
374 KOG0991 Replication factor C, 98.5 1.7E-07 3.6E-12 91.8 6.7 94 478-587 24-126 (333)
375 COG1125 OpuBA ABC-type proline 98.5 1.6E-07 3.5E-12 93.5 6.7 118 236-366 21-205 (309)
376 TIGR03015 pepcterm_ATPase puta 98.5 3.6E-06 7.9E-11 88.5 17.6 173 243-430 44-250 (269)
377 COG1121 ZnuC ABC-type Mn/Zn tr 98.5 2.4E-07 5.1E-12 94.3 8.0 58 291-359 147-204 (254)
378 PRK11388 DNA-binding transcrip 98.5 1.6E-07 3.5E-12 111.0 7.9 170 516-702 349-554 (638)
379 TIGR02442 Cob-chelat-sub cobal 98.5 4.6E-07 9.9E-12 106.4 11.3 154 206-387 2-212 (633)
380 PRK04132 replication factor C 98.5 2E-06 4.2E-11 102.0 16.3 152 242-415 564-729 (846)
381 PRK07399 DNA polymerase III su 98.5 2.2E-06 4.7E-11 91.8 15.0 179 206-415 2-219 (314)
382 PRK08769 DNA polymerase III su 98.5 1E-06 2.3E-11 93.9 12.3 155 513-691 24-206 (319)
383 PRK08116 hypothetical protein; 98.5 8.4E-07 1.8E-11 92.9 11.4 100 242-353 114-220 (268)
384 COG1221 PspF Transcriptional r 98.5 3.6E-07 7.9E-12 98.9 8.8 198 479-706 76-313 (403)
385 cd03216 ABC_Carb_Monos_I This 98.5 2E-07 4.4E-12 90.3 5.9 111 236-357 20-145 (163)
386 KOG0745 Putative ATP-dependent 98.5 4.5E-07 9.8E-12 96.2 8.6 97 242-338 226-331 (564)
387 COG1126 GlnQ ABC-type polar am 98.5 2.2E-07 4.9E-12 90.6 5.7 109 236-355 22-197 (240)
388 PRK08058 DNA polymerase III su 98.4 2E-06 4.4E-11 93.0 13.4 147 207-386 4-179 (329)
389 PRK15429 formate hydrogenlyase 98.4 8.4E-07 1.8E-11 105.7 11.2 197 479-704 374-611 (686)
390 PRK08181 transposase; Validate 98.4 5.2E-07 1.1E-11 94.0 7.9 100 515-630 106-209 (269)
391 PRK09183 transposase/IS protei 98.4 9.6E-07 2.1E-11 92.1 9.9 104 239-354 99-206 (259)
392 PRK05022 anaerobic nitric oxid 98.4 9E-07 2E-11 101.6 10.5 196 480-705 186-423 (509)
393 COG1118 CysA ABC-type sulfate/ 98.4 2.2E-07 4.8E-12 95.1 4.7 110 236-355 22-199 (345)
394 COG3842 PotA ABC-type spermidi 98.4 4.7E-07 1E-11 96.8 7.3 110 236-355 25-198 (352)
395 TIGR02329 propionate_PrpR prop 98.4 5.1E-07 1.1E-11 102.9 8.1 197 478-702 209-450 (526)
396 COG4619 ABC-type uncharacteriz 98.4 1.1E-06 2.4E-11 82.1 8.6 32 236-267 23-54 (223)
397 COG1136 SalX ABC-type antimicr 98.4 1.3E-06 2.9E-11 87.5 9.8 122 236-374 25-216 (226)
398 PRK08699 DNA polymerase III su 98.4 9E-07 1.9E-11 95.1 9.2 131 513-663 19-183 (325)
399 cd03222 ABC_RNaseL_inhibitor T 98.4 7E-07 1.5E-11 87.4 7.3 110 237-356 20-134 (177)
400 PF13173 AAA_14: AAA domain 98.4 2.2E-06 4.8E-11 79.4 10.3 70 242-313 2-73 (128)
401 PRK06090 DNA polymerase III su 98.4 2.1E-06 4.5E-11 91.5 11.2 129 513-663 23-178 (319)
402 cd03214 ABC_Iron-Siderophores_ 98.4 4.3E-07 9.2E-12 89.6 5.6 112 236-357 19-161 (180)
403 PRK09183 transposase/IS protei 98.4 6.6E-07 1.4E-11 93.3 7.2 71 515-586 102-176 (259)
404 PF13173 AAA_14: AAA domain 98.4 2E-06 4.3E-11 79.7 9.7 120 516-656 3-126 (128)
405 PRK08181 transposase; Validate 98.4 1.2E-06 2.7E-11 91.2 9.2 101 241-354 105-209 (269)
406 TIGR00368 Mg chelatase-related 98.4 3.7E-06 8E-11 95.2 13.4 47 206-267 190-236 (499)
407 KOG2680 DNA helicase TIP49, TB 98.3 8.5E-06 1.8E-10 82.7 14.0 82 622-706 319-413 (454)
408 PF13401 AAA_22: AAA domain; P 98.3 2.8E-06 6E-11 78.8 10.1 98 242-351 4-125 (131)
409 COG1239 ChlI Mg-chelatase subu 98.3 2.9E-06 6.3E-11 91.1 11.3 161 477-667 13-234 (423)
410 COG0606 Predicted ATPase with 98.3 1.3E-07 2.8E-12 102.6 1.0 47 477-538 175-221 (490)
411 PRK06526 transposase; Provisio 98.3 7.4E-07 1.6E-11 92.4 6.5 100 515-630 98-201 (254)
412 PRK07952 DNA replication prote 98.3 1.5E-06 3.2E-11 89.3 8.5 100 516-630 100-205 (244)
413 PRK06526 transposase; Provisio 98.3 1.2E-06 2.5E-11 90.9 7.9 101 241-354 97-201 (254)
414 PTZ00111 DNA replication licen 98.3 2.8E-06 6.1E-11 100.1 11.9 128 513-660 490-652 (915)
415 PF00158 Sigma54_activat: Sigm 98.3 5.8E-06 1.3E-10 80.2 12.0 118 211-353 2-143 (168)
416 COG3839 MalK ABC-type sugar tr 98.3 1.4E-06 3E-11 92.6 8.3 109 236-354 23-194 (338)
417 PRK08939 primosomal protein Dn 98.3 1E-06 2.2E-11 93.9 6.9 101 514-630 155-261 (306)
418 cd03228 ABCC_MRP_Like The MRP 98.3 1.7E-06 3.7E-11 84.5 8.0 110 236-357 22-158 (171)
419 PF01637 Arch_ATPase: Archaeal 98.3 5.2E-06 1.1E-10 84.9 11.9 180 212-411 3-228 (234)
420 PF03215 Rad17: Rad17 cell cyc 98.3 7.2E-06 1.6E-10 93.1 13.6 172 516-703 46-269 (519)
421 COG1124 DppF ABC-type dipeptid 98.3 2.4E-06 5.2E-11 85.2 8.4 110 236-355 27-203 (252)
422 COG1122 CbiO ABC-type cobalt t 98.3 1.1E-07 2.4E-12 96.9 -1.1 42 236-277 24-67 (235)
423 KOG2227 Pre-initiation complex 98.3 2.1E-05 4.6E-10 84.9 16.0 217 513-752 173-419 (529)
424 PF01637 Arch_ATPase: Archaeal 98.3 2.1E-06 4.6E-11 87.8 8.2 160 515-686 20-227 (234)
425 PRK12377 putative replication 98.3 2.4E-06 5.1E-11 88.0 8.3 100 516-630 102-206 (248)
426 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.3 1.8E-06 4E-11 81.7 6.9 106 236-357 20-130 (144)
427 PRK06921 hypothetical protein; 98.3 4.4E-06 9.5E-11 87.4 10.3 69 241-312 116-188 (266)
428 PRK10820 DNA-binding transcrip 98.3 2.7E-06 5.9E-11 97.7 9.6 169 516-703 228-438 (520)
429 COG2884 FtsE Predicted ATPase 98.3 4.5E-06 9.7E-11 79.9 9.3 112 236-358 22-201 (223)
430 cd03246 ABCC_Protease_Secretio 98.3 2.6E-06 5.6E-11 83.4 8.0 109 236-355 22-157 (173)
431 smart00350 MCM minichromosome 98.3 4.3E-06 9.4E-11 95.8 11.1 130 242-388 236-399 (509)
432 PF13401 AAA_22: AAA domain; P 98.3 5.4E-06 1.2E-10 76.9 9.8 98 516-628 5-126 (131)
433 PRK13765 ATP-dependent proteas 98.2 2.6E-06 5.7E-11 98.7 9.1 53 473-540 23-75 (637)
434 COG1221 PspF Transcriptional r 98.2 4E-06 8.7E-11 90.9 9.8 126 203-353 73-223 (403)
435 cd03247 ABCC_cytochrome_bd The 98.2 3.6E-06 7.9E-11 82.8 8.7 110 236-357 22-160 (178)
436 PRK06835 DNA replication prote 98.2 5.9E-06 1.3E-10 88.8 10.9 103 242-356 183-292 (329)
437 PRK12377 putative replication 98.2 6.9E-06 1.5E-10 84.6 11.1 70 242-313 101-175 (248)
438 PF01695 IstB_IS21: IstB-like 98.2 7.8E-07 1.7E-11 87.3 3.9 70 514-585 46-119 (178)
439 COG1484 DnaC DNA replication p 98.2 8.8E-06 1.9E-10 84.5 11.8 72 241-313 104-179 (254)
440 PF13177 DNA_pol3_delta2: DNA 98.2 1.7E-05 3.8E-10 76.6 13.0 132 212-374 1-159 (162)
441 PF00158 Sigma54_activat: Sigm 98.2 3.4E-06 7.5E-11 81.8 8.1 97 516-629 23-143 (168)
442 COG4608 AppF ABC-type oligopep 98.2 2.5E-06 5.4E-11 86.9 7.3 110 236-355 33-171 (268)
443 COG3829 RocR Transcriptional r 98.2 3E-06 6.5E-11 93.4 8.3 197 477-702 241-479 (560)
444 TIGR02031 BchD-ChlD magnesium 98.2 5.9E-06 1.3E-10 96.0 11.3 132 243-389 17-174 (589)
445 cd00267 ABC_ATPase ABC (ATP-bi 98.2 1.9E-06 4.1E-11 82.9 5.9 112 236-358 19-144 (157)
446 COG1484 DnaC DNA replication p 98.2 2.4E-06 5.2E-11 88.6 7.0 68 514-586 104-179 (254)
447 cd03238 ABC_UvrA The excision 98.2 4.7E-06 1E-10 81.5 8.5 109 236-355 15-150 (176)
448 PRK06964 DNA polymerase III su 98.2 1.2E-05 2.6E-10 86.6 12.1 133 240-388 19-203 (342)
449 PRK05022 anaerobic nitric oxid 98.2 4E-05 8.8E-10 88.1 17.3 150 206-383 185-365 (509)
450 PRK07952 DNA replication prote 98.2 4E-06 8.8E-11 86.1 8.0 69 243-313 100-174 (244)
451 PF01695 IstB_IS21: IstB-like 98.2 2.2E-06 4.7E-11 84.1 5.8 101 240-353 45-149 (178)
452 cd03230 ABC_DR_subfamily_A Thi 98.2 2.9E-06 6.2E-11 83.1 6.6 111 236-357 20-158 (173)
453 cd03229 ABC_Class3 This class 98.2 2.3E-06 4.9E-11 84.2 5.9 112 236-357 20-164 (178)
454 PRK06871 DNA polymerase III su 98.2 6.5E-05 1.4E-09 80.4 17.3 127 242-388 24-178 (325)
455 cd01120 RecA-like_NTPases RecA 98.2 5.8E-06 1.3E-10 79.4 8.6 110 245-355 2-138 (165)
456 PRK06851 hypothetical protein; 98.2 6.1E-05 1.3E-09 81.5 17.1 34 516-549 215-251 (367)
457 COG1117 PstB ABC-type phosphat 98.2 3.6E-06 7.7E-11 82.0 6.7 31 236-266 27-57 (253)
458 COG1119 ModF ABC-type molybden 98.2 4.7E-06 1E-10 83.2 7.7 64 290-363 178-242 (257)
459 PRK15429 formate hydrogenlyase 98.2 5.4E-05 1.2E-09 90.4 18.1 150 205-383 373-554 (686)
460 COG1131 CcmA ABC-type multidru 98.2 3.6E-06 7.9E-11 89.4 7.3 114 236-359 25-202 (293)
461 cd01120 RecA-like_NTPases RecA 98.2 1.3E-05 2.8E-10 76.9 10.6 110 518-631 2-138 (165)
462 COG1239 ChlI Mg-chelatase subu 98.1 2.7E-05 5.8E-10 83.8 13.5 159 204-389 13-232 (423)
463 COG1245 Predicted ATPase, RNas 98.1 3.4E-05 7.4E-10 83.0 13.9 28 240-267 98-125 (591)
464 KOG0990 Replication factor C, 98.1 9.6E-06 2.1E-10 83.6 9.3 133 517-671 64-209 (360)
465 TIGR02974 phageshock_pspF psp 98.1 2.1E-05 4.6E-10 85.0 12.5 145 211-383 2-177 (329)
466 TIGR02237 recomb_radB DNA repa 98.1 1.2E-05 2.7E-10 81.2 10.1 115 238-352 8-148 (209)
467 PRK09862 putative ATP-dependen 98.1 9.1E-06 2E-10 91.7 9.9 125 239-379 207-391 (506)
468 PF05729 NACHT: NACHT domain 98.1 2.4E-05 5.2E-10 75.4 11.6 140 244-390 2-164 (166)
469 PRK11608 pspF phage shock prot 98.1 2.1E-05 4.5E-10 85.0 12.2 149 207-383 5-184 (326)
470 PRK08939 primosomal protein Dn 98.1 8E-06 1.7E-10 87.0 8.7 71 241-313 155-229 (306)
471 cd03223 ABCD_peroxisomal_ALDP 98.1 9.4E-06 2E-10 78.9 8.5 106 236-355 21-149 (166)
472 PRK15424 propionate catabolism 98.1 8.7E-06 1.9E-10 92.8 9.3 151 205-383 216-406 (538)
473 PRK08699 DNA polymerase III su 98.1 1.8E-05 3.8E-10 85.2 11.1 129 241-386 20-182 (325)
474 COG1127 Ttg2A ABC-type transpo 98.1 6E-06 1.3E-10 82.1 6.6 31 237-267 29-59 (263)
475 PRK06835 DNA replication prote 98.1 4.8E-06 1E-10 89.4 6.5 69 516-586 184-258 (329)
476 cd03213 ABCG_EPDR ABCG transpo 98.1 8.7E-06 1.9E-10 81.3 8.0 109 236-355 29-172 (194)
477 PRK13539 cytochrome c biogenes 98.1 1.1E-05 2.3E-10 81.5 8.6 31 236-266 22-52 (207)
478 smart00763 AAA_PrkA PrkA AAA d 98.1 7.2E-06 1.6E-10 87.8 7.5 81 209-297 52-144 (361)
479 COG3829 RocR Transcriptional r 98.1 1E-05 2.2E-10 89.3 8.7 153 204-384 241-425 (560)
480 cd03255 ABC_MJ0796_Lo1CDE_FtsE 98.1 6.6E-06 1.4E-10 83.8 6.8 32 236-267 24-55 (218)
481 PF03215 Rad17: Rad17 cell cyc 98.1 9.3E-05 2E-09 84.2 16.6 66 200-273 11-76 (519)
482 PRK06921 hypothetical protein; 98.1 5.9E-06 1.3E-10 86.4 6.5 68 515-585 117-188 (266)
483 COG4525 TauB ABC-type taurine 98.1 1.3E-05 2.7E-10 77.0 8.0 31 236-266 25-55 (259)
484 COG1126 GlnQ ABC-type polar am 98.1 3.5E-06 7.6E-11 82.4 4.3 48 504-551 15-66 (240)
485 COG3638 ABC-type phosphate/pho 98.1 3.4E-06 7.5E-11 83.5 4.3 32 236-267 24-55 (258)
486 COG0606 Predicted ATPase with 98.1 2.1E-06 4.6E-11 93.4 3.0 48 205-267 176-223 (490)
487 cd03283 ABC_MutS-like MutS-lik 98.1 1.1E-05 2.3E-10 80.8 7.9 77 234-311 17-115 (199)
488 PRK11650 ugpC glycerol-3-phosp 98.1 6.6E-06 1.4E-10 89.9 7.0 31 236-266 24-54 (356)
489 PRK08769 DNA polymerase III su 98.1 0.00013 2.8E-09 78.0 16.5 151 242-413 26-204 (319)
490 PF00910 RNA_helicase: RNA hel 98.0 1.5E-05 3.3E-10 71.3 7.9 23 518-540 1-23 (107)
491 COG1129 MglA ABC-type sugar tr 98.0 0.00011 2.5E-09 81.7 16.3 32 236-267 28-59 (500)
492 COG2204 AtoC Response regulato 98.0 8.4E-06 1.8E-10 90.0 7.4 200 480-708 140-380 (464)
493 cd03259 ABC_Carb_Solutes_like 98.0 6.9E-06 1.5E-10 83.3 6.3 31 236-266 20-50 (213)
494 cd03301 ABC_MalK_N The N-termi 98.0 6.8E-06 1.5E-10 83.3 6.1 31 236-266 20-50 (213)
495 PRK07993 DNA polymerase III su 98.0 6.7E-05 1.5E-09 81.0 14.1 148 242-412 24-199 (334)
496 COG3604 FhlA Transcriptional r 98.0 1.5E-05 3.3E-10 86.8 8.9 195 477-702 219-456 (550)
497 PRK11432 fbpC ferric transport 98.0 8.3E-06 1.8E-10 88.8 7.0 31 236-266 26-56 (351)
498 TIGR03864 PQQ_ABC_ATP ABC tran 98.0 1.1E-05 2.3E-10 83.3 7.5 31 236-266 21-51 (236)
499 cd03269 ABC_putative_ATPase Th 98.0 1.2E-05 2.5E-10 81.4 7.6 31 236-266 20-50 (210)
500 PRK05917 DNA polymerase III su 98.0 3E-05 6.5E-10 81.1 10.7 121 513-652 17-154 (290)
No 1
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-122 Score=999.92 Aligned_cols=681 Identities=61% Similarity=1.004 Sum_probs=632.9
Q ss_pred CCcchHHhhcCCCCCeEEEecccCCCCcEEEECHHHHhhcCCCCCCEEEEEeCCCceEEEEEEcCCCCCCCeEEEcHhHH
Q 004267 15 KDYSTAILERKKSPNRLVVDEAINDDNSVVGLHPDTMDKLQIFRGDTILIKGKKRKDTICIALADDTCEQPKIRMNKVVR 94 (764)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~l~~~~gd~v~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~r 94 (764)
.+.+++|+..+..++.+.|.. .+++...+.+++..|+.+++..| |.+.|+.+...++.+...+. ....+.++...|
T Consensus 2 ~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~~l~~g--~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~r 77 (693)
T KOG0730|consen 2 ESPSTAILPVKCPQNNLVVLS-INDDASVVVLSEGAMDKLGLLRG--VLLDGKKRREPVDAVVQDET-SELIGRQTMVSR 77 (693)
T ss_pred CcccccccccccCCCCeEEec-CCCccchheecHHHHhhhcCCcc--eEEECccccCCccceeccCC-ccccchhhheec
Confidence 578899999999999999988 44455589999999999999999 99999987766654433334 778899999999
Q ss_pred hhcCcCCCCeEEEEecCCCCCCcEEEeccccCcccCcchhhHHHHHHHhhhhcCccccCCcEEEEecCceeEEEEEEEec
Q 004267 95 SNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTIEGVTGNLFDAFLRPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETD 174 (764)
Q Consensus 95 ~~~~~~~g~~v~v~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~f~v~~~~ 174 (764)
.++.++.|+.|.+++++.+..+.++.+.|+..+..++....++.+.+.|+....+++..|+++ ..+..+.|++++..
T Consensus 78 ~~l~~~~~~~~~~~~~p~v~~~~~i~~l~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 154 (693)
T KOG0730|consen 78 SNLRLQLGRLLHSSDCPSVKRPARIAVLPVDDTSEGIAGELFDVLERPFLLEALRPLVKGDTF---AGLNPAEFKVLELD 154 (693)
T ss_pred cchhhcccceecccCCCCccccceeeeeehhhccccchhhhhhhhhhhhhhhhhCccccccch---hhhhhhhhhccccc
Confidence 999999999999998778888888999999988888888888889999999889999999988 33445678888887
Q ss_pred CCceEeeCCCceEEecCCCCcccccccCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCC
Q 004267 175 PGEYCVVAPDTEIFCEGEPIKREDEDRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSG 254 (764)
Q Consensus 175 p~~~~~~~~~t~i~~~~~~~~~~~~~~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtG 254 (764)
|.. +++++|.+.+.+++....... ...++ +++||+..++..+++++.+|+++|..+.++|+.+|+++|+|||||||
T Consensus 155 ~~~--~v~~~t~~~~~~~~~~~~~~~-~~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~G 230 (693)
T KOG0730|consen 155 PSP--QVTPDTELSYLGEPAKREEEE-LPEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTG 230 (693)
T ss_pred cch--hcCccchhhhcCCCccccccc-ccccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCC
Confidence 766 788999998888887665444 46778 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCeEEEEechhhhhhccchhHHHHHHHHHHHHhcC-CeEEEEccccccCCCCCCCchHHHHHHHHHHH
Q 004267 255 KTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNA-PSIIFIDEIDSIAPKREKTHGEVERRIVSQLL 333 (764)
Q Consensus 255 KTtLar~la~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~-p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll 333 (764)
||.+++++|++.++.++.++++++++++.|++++.+|.+|+++...+ |+++||||+|.++|++....+ +++|++.||+
T Consensus 231 kt~l~~aVa~e~~a~~~~i~~peli~k~~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~-~e~Rv~sqll 309 (693)
T KOG0730|consen 231 KTFLVRAVANEYGAFLFLINGPELISKFPGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD-VESRVVSQLL 309 (693)
T ss_pred hHHHHHHHHHHhCceeEecccHHHHHhcccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch-HHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 999999999999999987666 8999999999
Q ss_pred HHhhcccCCCeEEEEEecCCCCCCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCCCchhhhHHhhhcCCCchH
Q 004267 334 TLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGA 413 (764)
Q Consensus 334 ~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~ 413 (764)
++|+++....+++||++||+|+.||+++|| |||+++++++.|+..+|.+|++.+++++++.+++++..+|..||||+|+
T Consensus 310 tL~dg~~~~~~vivl~atnrp~sld~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGa 388 (693)
T KOG0730|consen 310 TLLDGLKPDAKVIVLAATNRPDSLDPALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGA 388 (693)
T ss_pred HHHhhCcCcCcEEEEEecCCccccChhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHH
Confidence 999999999999999999999999999999 9999999999999999999999999999999889999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccccccchhhHHHhhhhcccchhhhccccccCCCCcceeeeeccCccccccccchhhhhcc
Q 004267 414 DLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVSNEHFQTALGTSNPSALRETVVEVPNVSWEDIGGLENVKREL 493 (764)
Q Consensus 414 dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~ps~~~~~~~~~~~v~~~~i~g~~~~k~~l 493 (764)
|+.++|++|++.+.++ ++++|..|+..++|+++|+..++.|+++|+||||++++|+.|
T Consensus 389 DL~~l~~ea~~~~~r~----------------------~~~~~~~A~~~i~psa~Re~~ve~p~v~W~dIGGlE~lK~el 446 (693)
T KOG0730|consen 389 DLAALCREASLQATRR----------------------TLEIFQEALMGIRPSALREILVEMPNVSWDDIGGLEELKREL 446 (693)
T ss_pred HHHHHHHHHHHHHhhh----------------------hHHHHHHHHhcCCchhhhheeccCCCCChhhccCHHHHHHHH
Confidence 9999999999988765 456788899999999999999999999999999999999999
Q ss_pred cceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccchhcccCcchHHHHHHHHHHhhC
Q 004267 494 QETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQS 573 (764)
Q Consensus 494 ~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~ 573 (764)
++.|.||+++++.|.++|+++++|||||||||||||++||++|++++.+|++|+|+++++||+|+||+.||++|++||+.
T Consensus 447 q~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~ 526 (693)
T KOG0730|consen 447 QQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQV 526 (693)
T ss_pred HHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCCCCCccCCCCCccceEEeecCCC
Q 004267 574 APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPD 653 (764)
Q Consensus 574 ~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~ 653 (764)
+||||||||||+++..|+++. +++.+|++++||+||||++..++|+||||||||+.||+|++||||||++||||+||
T Consensus 527 aP~IiFfDEiDsi~~~R~g~~---~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD 603 (693)
T KOG0730|consen 527 APCIIFFDEIDALAGSRGGSS---SGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPD 603 (693)
T ss_pred CCeEEehhhHHhHhhccCCCc---cchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCcc
Confidence 999999999999999998443 37899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCCCcccccccccccc
Q 004267 654 EDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRRDNPEAMDEDAAEDEV 733 (764)
Q Consensus 654 ~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (764)
.+.|.+||+.+++++++.+++|+++||+.|+|||||||.++|++|++.|+++.++ .
T Consensus 604 ~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~------------------------a 659 (693)
T KOG0730|consen 604 LEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRESIE------------------------A 659 (693)
T ss_pred HHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcc------------------------c
Confidence 9999999999999999999999999999999999999999999999999999875 3
Q ss_pred ccccHHHHHHHHHhcCCCCCCcccc
Q 004267 734 SEIKAAHFEESMKFARRSICSDAAA 758 (764)
Q Consensus 734 ~~i~~~~f~~a~~~~~~s~~~~~~~ 758 (764)
..|+.+||++|++.++||+ +..+.
T Consensus 660 ~~i~~~hf~~al~~~r~s~-~~~~~ 683 (693)
T KOG0730|consen 660 TEITWQHFEEALKAVRPSL-TSELL 683 (693)
T ss_pred ccccHHHHHHHHHhhcccC-CHHHH
Confidence 4799999999999999999 55443
No 2
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-117 Score=946.67 Aligned_cols=540 Identities=49% Similarity=0.867 Sum_probs=497.0
Q ss_pred CCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhhhhc
Q 004267 203 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKL 282 (764)
Q Consensus 203 ~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~ 282 (764)
+.++|.||||+++++.++.+++.. ++||+.|.++|+.|++|||||||||||||+||+++|++++.+|+.|+++++++.+
T Consensus 185 snv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGv 263 (802)
T KOG0733|consen 185 SNVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGV 263 (802)
T ss_pred CCcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhccc
Confidence 467999999999999999999998 9999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCC----CeEEEEEecCCCCCCC
Q 004267 283 AGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSR----AHVIVIGATNRPNSID 358 (764)
Q Consensus 283 ~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~----~~v~vI~atn~~~~ld 358 (764)
.|+++++++.+|.+|....|||+||||||++.|+|...+.++++|++.||++.||++... ..|+|||+||+|+.+|
T Consensus 264 SGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslD 343 (802)
T KOG0733|consen 264 SGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLD 343 (802)
T ss_pred CcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccC
Confidence 999999999999999999999999999999999999999999999999999999998754 5799999999999999
Q ss_pred hhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCCCchhhhHHhhhcCCCchHHHHHHHHHHHHHHHHhhcccccc--
Q 004267 359 PALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDL-- 436 (764)
Q Consensus 359 ~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~-- 436 (764)
|+|||.|||+++|.+++|++.+|.+||+..++++.+..+.++..+|..|+||+|+||.+||.+|+.-++++..+....
T Consensus 344 paLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~~~~p~ 423 (802)
T KOG0733|consen 344 PALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKRILDQSSSPL 423 (802)
T ss_pred HHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhhcccCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999886652220
Q ss_pred --------------ccch-----------------------------hhHHHhhhhcccchhhhccccccCCCCcceeee
Q 004267 437 --------------EDET-----------------------------IDAEILNSMAVSNEHFQTALGTSNPSALRETVV 473 (764)
Q Consensus 437 --------------~~~~-----------------------------~~~~~~~~~~~~~~~~~~al~~~~ps~~~~~~~ 473 (764)
+.+. ...+....+.+..+||..|+..++|++.|+.+.
T Consensus 424 ~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~~iQPSakREGF~ 503 (802)
T KOG0733|consen 424 TKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEALSKIQPSAKREGFA 503 (802)
T ss_pred ccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHHHhcCcchhcccce
Confidence 0000 001233456788999999999999999999999
Q ss_pred eccCccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccchh
Q 004267 474 EVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 553 (764)
Q Consensus 474 ~~~~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~~ 553 (764)
.+|+++|+|||++++++.+|...|.||+++++.|+.+|+..|.|+||+||||||||+||||+|++.+.|||+|+|++|++
T Consensus 504 tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlN 583 (802)
T KOG0733|consen 504 TVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLN 583 (802)
T ss_pred ecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcchHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCCCC
Q 004267 554 MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDII 633 (764)
Q Consensus 554 ~~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~l 633 (764)
||||+||+.||.+|++||..+||||||||+|+|.++|+.+. ...+.|++||||+||||++.+.+|+|||||||||.|
T Consensus 584 kYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~---s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiI 660 (802)
T KOG0733|consen 584 KYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG---SSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDII 660 (802)
T ss_pred HHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC---chhHHHHHHHHHHHhcccccccceEEEeecCCCccc
Confidence 99999999999999999999999999999999999998753 567899999999999999999999999999999999
Q ss_pred CccCCCCCccceEEeecCCCHHHHHHHHHHHhc--cCCCCCcccHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHHHHHH
Q 004267 634 DPALLRPGRLDQLIYIPLPDEDSRHQIFKACLR--KSPVSKDVDLRALAKYTQ--GFSGADITEICQRACKYAIRENIEK 709 (764)
Q Consensus 634 d~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~--~~~~~~~~~l~~la~~~~--g~sg~di~~~~~~a~~~a~~~~~~~ 709 (764)
|||+|||||||+.+||++|+.++|.+||+.+++ +.++++|+|++.+|+.+. |||||||..+|++|.+.|+++.+..
T Consensus 661 DpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~~ 740 (802)
T KOG0733|consen 661 DPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRESLFE 740 (802)
T ss_pred chhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999 889999999999999876 9999999999999999999998763
Q ss_pred hHHHHhhhcCCCccccccccccccccccHHHHHHHHHhcCCCCCCccc
Q 004267 710 DIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRSICSDAA 757 (764)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~s~~~~~~ 757 (764)
...... .-........+|..||++|+++++||+ ++.|
T Consensus 741 ~~~~~~----------~~~~~~~~~~~t~~hF~eA~~~i~pSv-~~~d 777 (802)
T KOG0733|consen 741 IDSSED----------DVTVRSSTIIVTYKHFEEAFQRIRPSV-SERD 777 (802)
T ss_pred ccccCc----------ccceeeeeeeecHHHHHHHHHhcCCCc-cHHH
Confidence 211000 000000123589999999999999999 6644
No 3
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=1.9e-101 Score=914.28 Aligned_cols=709 Identities=50% Similarity=0.852 Sum_probs=625.1
Q ss_pred eEEEecccC-C-CCcEEEECHHHHhhcCCCCCCEEEEE-eCCCceEEEEEEc--CCCCCCCeEEEcHhHHhhcCcCCCCe
Q 004267 30 RLVVDEAIN-D-DNSVVGLHPDTMDKLQIFRGDTILIK-GKKRKDTICIALA--DDTCEQPKIRMNKVVRSNLRVRLGDV 104 (764)
Q Consensus 30 ~~~v~~~~~-~-~~~~v~~~~~~~~~l~~~~gd~v~i~-~~~~~~~~~~~~~--~~~~~~~~i~~~~~~r~~~~~~~g~~ 104 (764)
.++|.++.. + |+++++|+|+.|.+||+..||+|.|. |++ .+++.+|+ .++++.+.|++++.+|.|+|+++||.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (733)
T TIGR01243 3 ELRVAEAYPRDVGRGIVRIDRQTAARLGVEPGDFVEIEKGDR--SVVAIVWPLRPDDEGRGIIRMDGYLRANAGVTIGDT 80 (733)
T ss_pred EEEehhhhccCCCCCeEeeCHHHHHhcCCCCCCEEEEecCCC--ceeEEEEecCccccCCCEEeecHHHHhhcCCCCCCe
Confidence 367888744 4 89999999999999999999999999 544 45677776 45788999999999999999999999
Q ss_pred EEEEecCCCCCCcEEEeccccCcccCcchhhHHHHHHHhhhhcCccccCCcEEEEecCceeEEEEEEEecCCceEeeCCC
Q 004267 105 VSVHQCPDVKYGKRVHILPIDDTIEGVTGNLFDAFLRPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPD 184 (764)
Q Consensus 105 v~v~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~f~v~~~~p~~~~~~~~~ 184 (764)
|+|+++ .++.+.+|.+.|..... .+..+..+++.++. .+++..|+.+.+........|.|+++.|.+++.++..
T Consensus 81 ~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~v~~~~p~~~~~~~~~ 154 (733)
T TIGR01243 81 VTVERA-EVKEAKKVVLAPTQPIR---FGRDFVDYVKEFLL--GKPISKGETVIVPVLEGALPFVVVSTQPAGFVYVTEA 154 (733)
T ss_pred EEEeec-CCCccceEeeccccccc---cccchHHHHHHHHc--CCCCCCCCEEEecccCcceeEEEEecCCCCcEEECCC
Confidence 999996 47788999988864321 12334566777775 4789999998876444567899999999999999999
Q ss_pred ceEEecCCCCcccccccCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHH
Q 004267 185 TEIFCEGEPIKREDEDRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVAN 264 (764)
Q Consensus 185 t~i~~~~~~~~~~~~~~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~ 264 (764)
|.+.+...+.........++++|+||||+++++++|++++.+|+.+|++|+++++.+++++|||||||||||+|++++|+
T Consensus 155 t~~~~~~~~~~~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~ 234 (733)
T TIGR01243 155 TEVEIREKPVREEIERKVPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVAN 234 (733)
T ss_pred ceEEecCCccccccccCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHH
Confidence 99877655543222224578999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCeEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCe
Q 004267 265 ETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAH 344 (764)
Q Consensus 265 ~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~ 344 (764)
+++.+++.++++++.+++.|+++..++.+|+.+....|++|||||+|.++++++...++.+.+++.+|+++|+++..+..
T Consensus 235 ~~~~~~i~i~~~~i~~~~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~ 314 (733)
T TIGR01243 235 EAGAYFISINGPEIMSKYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGR 314 (733)
T ss_pred HhCCeEEEEecHHHhcccccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCC
Confidence 99999999999999999999999999999999999999999999999999998877788889999999999999988889
Q ss_pred EEEEEecCCCCCCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCCCchhhhHHhhhcCCCchHHHHHHHHHHHH
Q 004267 345 VIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAAL 424 (764)
Q Consensus 345 v~vI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~ 424 (764)
++||++||+++.+|+++++++||++.++++.|+.++|.+||+.+.+.+++..+.++..++..++||+++|+..+|+++++
T Consensus 315 vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~ 394 (733)
T TIGR01243 315 VIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAM 394 (733)
T ss_pred EEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999888899999999999999999999999999
Q ss_pred HHHHhhcc--ccccccchhhHHHhhhhcccchhhhccccccCCCCcceeeeeccCccccccccchhhhhcccceeeccCC
Q 004267 425 QCIREKMD--VIDLEDETIDAEILNSMAVSNEHFQTALGTSNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVE 502 (764)
Q Consensus 425 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~ps~~~~~~~~~~~v~~~~i~g~~~~k~~l~~~v~~~~~ 502 (764)
.++++... ..+.....+..+......++..+|..++..+.|+.+++...+.|.++|++++|++.+|+.|.+.+.||+.
T Consensus 395 ~al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~~~~~~~~~~~~~~~di~g~~~~k~~l~~~v~~~~~ 474 (733)
T TIGR01243 395 AALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEALKMVEPSAIREVLVEVPNVRWSDIGGLEEVKQELREAVEWPLK 474 (733)
T ss_pred HHHHHHhhccccccccccccchhcccccccHHHHHHHHhhccccccchhhccccccchhhcccHHHHHHHHHHHHHhhhh
Confidence 98887544 2222223334444456678899999999999999999988899999999999999999999999999999
Q ss_pred ChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccchhcccCcchHHHHHHHHHHhhCCCeEEEEec
Q 004267 503 HPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDE 582 (764)
Q Consensus 503 ~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~~p~iifiDE 582 (764)
+++.+.++|+++++|+|||||||||||++|+++|++++.+|+.+++++++++|+|+++++++.+|+.|+...||||||||
T Consensus 475 ~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A~~~~p~iifiDE 554 (733)
T TIGR01243 475 HPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDE 554 (733)
T ss_pred CHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCCCCCccCCCCCccceEEeecCCCHHHHHHHHH
Q 004267 583 LDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFK 662 (764)
Q Consensus 583 id~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~ 662 (764)
||++++.|+... .....++++++||++||++...++++||+|||+|+.||||++||||||++|+||+||.++|.+||+
T Consensus 555 id~l~~~r~~~~--~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~ 632 (733)
T TIGR01243 555 IDAIAPARGARF--DTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFK 632 (733)
T ss_pred hhhhhccCCCCC--CccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHH
Confidence 999999887542 234678999999999999988899999999999999999999999999999999999999999999
Q ss_pred HHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCCCccccccccccccccccHHHHH
Q 004267 663 ACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRRDNPEAMDEDAAEDEVSEIKAAHFE 742 (764)
Q Consensus 663 ~~~~~~~~~~~~~l~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~ 742 (764)
.++++.++..++|+..+|+.|+||||+||.++|++|++.|+++.+....... .. ...........|+++||+
T Consensus 633 ~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~-----~~---~~~~~~~~~~~i~~~~f~ 704 (733)
T TIGR01243 633 IHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKEK-----LE---VGEEEFLKDLKVEMRHFL 704 (733)
T ss_pred HHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccchh-----hh---cccccccccCcccHHHHH
Confidence 9999999999999999999999999999999999999999999765321100 00 000001123479999999
Q ss_pred HHHHhcCCCCCCccc
Q 004267 743 ESMKFARRSICSDAA 757 (764)
Q Consensus 743 ~a~~~~~~s~~~~~~ 757 (764)
+|+++++||+ ++++
T Consensus 705 ~al~~~~ps~-~~~~ 718 (733)
T TIGR01243 705 EALKKVKPSV-SKED 718 (733)
T ss_pred HHHHHcCCCC-CHHH
Confidence 9999999999 6654
No 4
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-87 Score=734.16 Aligned_cols=602 Identities=36% Similarity=0.608 Sum_probs=488.7
Q ss_pred hhhHHHHHHHhhhhcCccccCCcEEEEecC------------------ceeEEEEEEEecCC---ceEeeCCCceEEecC
Q 004267 133 GNLFDAFLRPYFTEAYRPVRKGDLFLVRGG------------------MRSVEFKVIETDPG---EYCVVAPDTEIFCEG 191 (764)
Q Consensus 133 ~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~------------------~~~~~f~v~~~~p~---~~~~~~~~t~i~~~~ 191 (764)
.+..+..++.||. ..|.++.||+|++... ...++|+|++.+|. .+++.++.|.++..+
T Consensus 303 ~~~~~~~l~~~f~-t~ril~~gdvf~i~~~~~~~~~~~~~~l~l~~~~d~~v~~~v~~~ep~~~~~~~i~~~~T~lv~~~ 381 (953)
T KOG0736|consen 303 AGNIDVVLKKHFK-TPRILQSGDVFCIPINSQMANLNGYPELPLWRETDFLVYKKVIEAEPGNESAYIIDTNHTSLVLVG 381 (953)
T ss_pred hhHHHHHHHHHhC-cceeeecCCEEEEeehhhhcccccchhhHhhhhccceeEEEEeecCCCccceEEEcCCCceEEEcc
Confidence 3566778899997 6789999999987421 24678999999885 356667788887765
Q ss_pred CCCcccccccCCC-----CCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 004267 192 EPIKREDEDRLDE-----VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET 266 (764)
Q Consensus 192 ~~~~~~~~~~~~~-----~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l 266 (764)
....+ .+-++. .++-..-+.+..+..+..++.-+ +.|. ..++.-...+||+|+|||||||+++++|.++
T Consensus 382 ~~ss~--~~~lps~~~~l~n~~~~~~~~~~~~~l~~vl~p~-~~~s---~~~~~~~~~vLLhG~~g~GK~t~V~~vas~l 455 (953)
T KOG0736|consen 382 ATSSR--VPLLPSSLSTLWNSLSPPGLEAKVLELVAVLSPQ-KQPS---GALLTLNPSVLLHGPPGSGKTTVVRAVASEL 455 (953)
T ss_pred ccccC--CcCCChhhHHHhccCCCccchHHHHHHHHHhCcc-cCcc---hhccccceEEEEeCCCCCChHHHHHHHHHHh
Confidence 44332 011110 12223344444444444444322 2221 2233445679999999999999999999999
Q ss_pred CCeEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhh---cccCCC
Q 004267 267 GAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMD---GLKSRA 343 (764)
Q Consensus 267 ~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld---~~~~~~ 343 (764)
+.+++.++|.++.+...+..+.++..+|+.|+...|+|||+-++|.+.-++.. ..+.++.+.+..++. ......
T Consensus 456 g~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dg---ged~rl~~~i~~~ls~e~~~~~~~ 532 (953)
T KOG0736|consen 456 GLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDG---GEDARLLKVIRHLLSNEDFKFSCP 532 (953)
T ss_pred CCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCC---chhHHHHHHHHHHHhcccccCCCC
Confidence 99999999999999999999999999999999999999999999998855433 334455555544444 334667
Q ss_pred eEEEEEecCCCCCCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCCCchhhhHHhhhcCCCchHHHHHHHHHHH
Q 004267 344 HVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAA 423 (764)
Q Consensus 344 ~v~vI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~ 423 (764)
+++||++|+..+.+++.+++ .|.++|.++.|++++|.+||+.+.....+..++.+..++.+|.||+.+++.+++....
T Consensus 533 ~~ivv~t~~s~~~lp~~i~~--~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l~~~~s 610 (953)
T KOG0736|consen 533 PVIVVATTSSIEDLPADIQS--LFLHEIEVPALSEEQRLEILQWYLNHLPLNQDVNLKQLARKTSGFSFGDLEALVAHSS 610 (953)
T ss_pred ceEEEEeccccccCCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCHHHHHHHhcCch
Confidence 99999999999999999998 6778999999999999999999999999999999999999999999999999988763
Q ss_pred HHHH---HhhccccccccchhhHHHhhhhcccchhhhccccccCCCCcce-eeeeccCccccccccchhhhhcccceeec
Q 004267 424 LQCI---REKMDVIDLEDETIDAEILNSMAVSNEHFQTALGTSNPSALRE-TVVEVPNVSWEDIGGLENVKRELQETVQY 499 (764)
Q Consensus 424 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~ps~~~~-~~~~~~~v~~~~i~g~~~~k~~l~~~v~~ 499 (764)
..+. ....-.-................++++||.+++...+.+.... ....+|+|+|+||||++++|..+.+.+..
T Consensus 611 ~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~~~~~fs~aiGAPKIPnV~WdDVGGLeevK~eIldTIql 690 (953)
T KOG0736|consen 611 LAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSRLQKEFSDAIGAPKIPNVSWDDVGGLEEVKTEILDTIQL 690 (953)
T ss_pred HHHHHHHHhhcccccchhccccccccccceecHHHHHHHHHHHHHhhhhhcCCCCCCccchhcccCHHHHHHHHHHHhcC
Confidence 3222 2111000000011111223456788999999888665433222 34578999999999999999999999999
Q ss_pred cCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccchhcccCcchHHHHHHHHHHhhCCCeEEE
Q 004267 500 PVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLF 579 (764)
Q Consensus 500 ~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~~p~iif 579 (764)
|++|+++|.. |++++.|+|||||||||||.+|||+|+++..+|++|+||||++||+|+||+++|++|++||..+|||||
T Consensus 691 PL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVGqSE~NVR~VFerAR~A~PCVIF 769 (953)
T KOG0736|consen 691 PLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVGQSEENVREVFERARSAAPCVIF 769 (953)
T ss_pred cccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhcchHHHHHHHHHHhhccCCeEEE
Confidence 9999999987 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCC--CCCcEEEEecCCCCCCCCccCCCCCccceEEeecCC-CHHH
Q 004267 580 FDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS--AKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLP-DEDS 656 (764)
Q Consensus 580 iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~--~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p-~~~~ 656 (764)
|||+|+++++||.+ ++++++.+|+++|||.||||+. ..+.|+|||||||||.|||||+||||||+.+|++++ |.+.
T Consensus 770 FDELDSlAP~RG~s-GDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~es 848 (953)
T KOG0736|consen 770 FDELDSLAPNRGRS-GDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAES 848 (953)
T ss_pred eccccccCccCCCC-CCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHH
Confidence 99999999999987 5678999999999999999998 567999999999999999999999999999999988 6788
Q ss_pred HHHHHHHHhccCCCCCcccHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCCCcccccccccccccc
Q 004267 657 RHQIFKACLRKSPVSKDVDLRALAKYT-QGFSGADITEICQRACKYAIRENIEKDIERERRRRDNPEAMDEDAAEDEVSE 735 (764)
Q Consensus 657 r~~Il~~~~~~~~~~~~~~l~~la~~~-~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (764)
+.+||+...+++.++.++|+.++|+.+ ..|||||+.++|..|.+.|++|.++.... +.+.....+.....
T Consensus 849 k~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~~ie~---------g~~~~~e~~~~~v~ 919 (953)
T KOG0736|consen 849 KLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIHDIES---------GTISEEEQESSSVR 919 (953)
T ss_pred HHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHHHhhh---------ccccccccCCceEE
Confidence 999999999999999999999999987 48999999999999999999998775432 11222223445678
Q ss_pred ccHHHHHHHHHhcCCCCCCcccc
Q 004267 736 IKAAHFEESMKFARRSICSDAAA 758 (764)
Q Consensus 736 i~~~~f~~a~~~~~~s~~~~~~~ 758 (764)
|+++||-+|+++.+||+ |++|+
T Consensus 920 V~~eDflks~~~l~PSv-S~~EL 941 (953)
T KOG0736|consen 920 VTMEDFLKSAKRLQPSV-SEQEL 941 (953)
T ss_pred EEHHHHHHHHHhcCCcc-cHHHH
Confidence 99999999999999999 88776
No 5
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.4e-74 Score=619.94 Aligned_cols=455 Identities=37% Similarity=0.608 Sum_probs=401.2
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhC----CeEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEEccccccCC
Q 004267 240 KPPKGILLYGPPGSGKTLIARAVANETG----AFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAP 315 (764)
Q Consensus 240 ~~~~~vLL~GppGtGKTtLar~la~~l~----~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~ 315 (764)
..+.+|||+||+|||||.|+++++.+.. +++..++|+.+.........+.++.+|..+..+.|+|+++|++|.|+.
T Consensus 429 ~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~ 508 (952)
T KOG0735|consen 429 FRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLAS 508 (952)
T ss_pred cccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhhhhc
Confidence 3456799999999999999999999874 456789998887766666777889999999999999999999999987
Q ss_pred CCCC---CchHHHHHHHHHHHHHhhcccC-CCeEEEEEecCCCCCCChhhhccCCcceEEEecCCChHHHHHHHHHHhcC
Q 004267 316 KREK---THGEVERRIVSQLLTLMDGLKS-RAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKN 391 (764)
Q Consensus 316 ~~~~---~~~~~~~~v~~~Ll~~ld~~~~-~~~v~vI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~ 391 (764)
..+. ..+....+....|...++.+.. +..+.+|++.+....++|.|-.+++|...+.++.|+..+|.+||+..+.+
T Consensus 509 ~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~ 588 (952)
T KOG0735|consen 509 ASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSK 588 (952)
T ss_pred cCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHh
Confidence 3322 2233444554444454444443 44678999999999999999999999999999999999999999987765
Q ss_pred CCCC-CchhhhHHhhhcCCCchHHHHHHHHHHHHHHHHhhccccccccchhhHHHhhhhcccchhhhccccccCCCCcce
Q 004267 392 MKLS-DDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVSNEHFQTALGTSNPSALRE 470 (764)
Q Consensus 392 ~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~ps~~~~ 470 (764)
.... ...+++.++..|+||...|+..++.+|...++...... ....++.++|.++++.+.|.++|.
T Consensus 589 ~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~-------------~~klltke~f~ksL~~F~P~aLR~ 655 (952)
T KOG0735|consen 589 NLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISN-------------GPKLLTKELFEKSLKDFVPLALRG 655 (952)
T ss_pred hhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhcc-------------CcccchHHHHHHHHHhcChHHhhh
Confidence 4321 22356669999999999999999999988777443211 112578899999999999999998
Q ss_pred eeeecc-CccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecc
Q 004267 471 TVVEVP-NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGP 549 (764)
Q Consensus 471 ~~~~~~-~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~ 549 (764)
.....+ .++|+||||+.++|+.|.+.++||.+++..|...+++.+.|+|||||||||||.||.++|..++.+||+|+||
T Consensus 656 ik~~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGP 735 (952)
T KOG0735|consen 656 IKLVKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGP 735 (952)
T ss_pred ccccccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCH
Confidence 765444 4999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhcccCcchHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCC
Q 004267 550 ELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNR 629 (764)
Q Consensus 550 ~l~~~~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~ 629 (764)
++++||+|.||+++|.+|.+|+...|||+||||+|+++++||.+ ..+..+|++||||++|||.+..++|+|+|||.|
T Consensus 736 ElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhD---sTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsR 812 (952)
T KOG0735|consen 736 ELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHD---STGVTDRVVNQLLTELDGAEGLDGVYILAATSR 812 (952)
T ss_pred HHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCC---CCCchHHHHHHHHHhhccccccceEEEEEecCC
Confidence 99999999999999999999999999999999999999999864 567999999999999999999999999999999
Q ss_pred CCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 004267 630 PDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEK 709 (764)
Q Consensus 630 ~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~ 709 (764)
||.||||||||||+|+.+++|+|++.+|.+|++...+...++.++|++.+|..|+|||||||+.+|-.|.+.|+++.+..
T Consensus 813 pdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~~l~~ 892 (952)
T KOG0735|consen 813 PDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHEILKR 892 (952)
T ss_pred ccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred h
Q 004267 710 D 710 (764)
Q Consensus 710 ~ 710 (764)
.
T Consensus 893 ~ 893 (952)
T KOG0735|consen 893 E 893 (952)
T ss_pred c
Confidence 3
No 6
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-69 Score=615.78 Aligned_cols=489 Identities=56% Similarity=0.915 Sum_probs=451.5
Q ss_pred ccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEE
Q 004267 226 LPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSII 305 (764)
Q Consensus 226 ~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il 305 (764)
+|+.+++.++.+++.++.+++++||||+|||+++++++.. +..+..++++++.+++.|+++..++.+|+.+....|+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii 80 (494)
T COG0464 2 LPLKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSII 80 (494)
T ss_pred CCccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeE
Confidence 5788999999999999999999999999999999999999 666688999999999999999999999999999999999
Q ss_pred EEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCChhhhccCCcceEEEecCCChHHHHHHH
Q 004267 306 FIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVL 385 (764)
Q Consensus 306 ~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il 385 (764)
++||++.+++.+.........+++.+++..++++. +..+++++.++++..+++++++++||++++.+..|+...|.+|+
T Consensus 81 ~~d~~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~-~~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei~ 159 (494)
T COG0464 81 FIDEIDALAPKRSSDQGEVERRVVAQLLALMDGLK-RGQVIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEIL 159 (494)
T ss_pred eechhhhcccCccccccchhhHHHHHHHHhccccc-CCceEEEeecCCccccChhHhCccccceeeecCCCCHHHHHHHH
Confidence 99999999999987667788999999999999999 54588999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCchhhhHHhhhcCCCchHHHHHHHHHHHHHHHHhhccccccccchhhHHHhhhhcccchhhhccccccCC
Q 004267 386 RIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVSNEHFQTALGTSNP 465 (764)
Q Consensus 386 ~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~p 465 (764)
..+...+....+.++..++..++||.++++..+|.++.+...++.. ........++.+++..++....|
T Consensus 160 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~-----------~~~~~~~~~~~~~~~~~l~~~~~ 228 (494)
T COG0464 160 QIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAI-----------DLVGEYIGVTEDDFEEALKKVLP 228 (494)
T ss_pred HHHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhh-----------ccCcccccccHHHHHHHHHhcCc
Confidence 9999999998888999999999999999999999999888877652 01113445777888888888888
Q ss_pred CCcceeeeeccCccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEE
Q 004267 466 SALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFIS 545 (764)
Q Consensus 466 s~~~~~~~~~~~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~ 545 (764)
+ ++.....+.+.|.++||++.+|+.+++.+.+++.+++.|.+.++++++|+|||||||||||+||+++|.+++.+|+.
T Consensus 229 ~--~~~~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~ 306 (494)
T COG0464 229 S--RGVLFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFIS 306 (494)
T ss_pred c--cccccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEE
Confidence 7 66778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecccchhcccCcchHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEe
Q 004267 546 VKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIG 625 (764)
Q Consensus 546 v~~~~l~~~~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~ 625 (764)
+++++++++|+|+++++|+.+|..|++..||||||||+|++++.|+.+.+ +...+++++||++|++++...+|+||+
T Consensus 307 v~~~~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~---~~~~r~~~~lL~~~d~~e~~~~v~vi~ 383 (494)
T COG0464 307 VKGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSED---GSGRRVVGQLLTELDGIEKAEGVLVIA 383 (494)
T ss_pred eeCHHHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCc---hHHHHHHHHHHHHhcCCCccCceEEEe
Confidence 99999999999999999999999999999999999999999999976532 234799999999999999999999999
Q ss_pred cCCCCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCC--CCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q 004267 626 ATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSP--VSKDVDLRALAKYTQGFSGADITEICQRACKYAI 703 (764)
Q Consensus 626 aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~--~~~~~~l~~la~~~~g~sg~di~~~~~~a~~~a~ 703 (764)
|||+|+.+|||++||||||++++||+||.++|.+||+.++++.. +..++++..+++.|+||||+||.++|++|++.++
T Consensus 384 aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~ 463 (494)
T COG0464 384 ATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEAL 463 (494)
T ss_pred cCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998543 5688999999999999999999999999999999
Q ss_pred HHHHHHhHHHHhhhcCCCccccccccccccccccHHHHHHHHHhcCCCCCCccccccccc
Q 004267 704 RENIEKDIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRSICSDAAAVPRYW 763 (764)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~s~~~~~~~~~~~~ 763 (764)
++.. ...||++||.+|+++++||+ + ++.|
T Consensus 464 ~~~~-------------------------~~~~~~~~~~~a~~~~~p~~-~-----~~~~ 492 (494)
T COG0464 464 REAR-------------------------RREVTLDDFLDALKKIKPSV-T-----YEEW 492 (494)
T ss_pred HHhc-------------------------cCCccHHHHHHHHHhcCCCC-C-----hhhc
Confidence 9874 23699999999999999999 5 5555
No 7
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.8e-62 Score=511.70 Aligned_cols=602 Identities=28% Similarity=0.438 Sum_probs=447.9
Q ss_pred eEEEecccCC---CCcEEEECHHHHhhcCCCCCCEEEEEeCCCceEEEEEEcCCCCCCCeEEEcHhHHhhcCcCCCCeEE
Q 004267 30 RLVVDEAIND---DNSVVGLHPDTMDKLQIFRGDTILIKGKKRKDTICIALADDTCEQPKIRMNKVVRSNLRVRLGDVVS 106 (764)
Q Consensus 30 ~~~v~~~~~~---~~~~v~~~~~~~~~l~~~~gd~v~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~g~~v~ 106 (764)
.++|..+..+ -.+.++++|.++++-+ +..+... ..++.......+++|.|+++..+|+|+++++|+.|.
T Consensus 10 ~~~v~k~ps~e~altn~a~v~~~DF~~~~-----~~~vd~~---~~~Fs~~~~~~i~~g~i~fs~~qR~wa~~Sl~qev~ 81 (744)
T KOG0741|consen 10 AFQVTKCPSNELALTNCAYVSPSDFRQFQ-----VIIVDNF---HYVFSTEFTPSIPPGNIGFSLPQRKWAGWSLGQEVE 81 (744)
T ss_pred eeeeecCCchhhhccCcceeCccccccce-----eeEEeee---eEEEEeeccCCCCCceeccchhhhhhhhcccCceeE
Confidence 4667655443 4556888888876433 2223221 256666667789999999999999999999999999
Q ss_pred EEecCCCCCCc---EEEecc--cc---CcccCcchh-hHHHHHHHhhhhcCccccCCcEEEEecCc-eeEEEEEEEec--
Q 004267 107 VHQCPDVKYGK---RVHILP--ID---DTIEGVTGN-LFDAFLRPYFTEAYRPVRKGDLFLVRGGM-RSVEFKVIETD-- 174 (764)
Q Consensus 107 v~~~~~~~~~~---~v~~~~--~~---~~~~~~~~~-~~~~~l~~~~~~~~~~v~~g~~~~~~~~~-~~~~f~v~~~~-- 174 (764)
|+++....... .+.+.. .+ .+...+..+ ...++.+.|- ..++++|+.+.+...+ ..+.++|.+++
T Consensus 82 V~~~~~~~~~~~l~~m~le~dF~~k~~~~sep~Dad~ma~qF~~~y~---~q~fsvgQ~~~f~f~~~~~l~l~v~~ie~~ 158 (744)
T KOG0741|consen 82 VKPFTFDGSCDYLGSMTLEIDFLNKKNTTSEPFDADEMAKQFKRQYN---SQAFSVGQQLVFEFNGNKLLGLKVKDIEAF 158 (744)
T ss_pred EEecccCcccccceeEEEEehhhhcCCCCCCCCCHHHHHHHHHHHhc---CcccCCccEEEEEecCceEeeeEEEEEeee
Confidence 99875322212 222210 11 112233333 3344444444 3568999987765443 45667776653
Q ss_pred -C--------------CceEeeCCCceEEecCCCCc----------cccccc--CCCCCcc--cccChHHHHHHH-HHHH
Q 004267 175 -P--------------GEYCVVAPDTEIFCEGEPIK----------REDEDR--LDEVGYD--DVGGVRKQMAQI-RELV 224 (764)
Q Consensus 175 -p--------------~~~~~~~~~t~i~~~~~~~~----------~~~~~~--~~~~~~~--~i~Gl~~~~~~l-~e~i 224 (764)
| ..++++..+|.|.+.....+ +..... -++..|+ .||||++++..| |.+.
T Consensus 159 D~~~~~~~~a~~~~~~~~~G~l~~nT~i~F~k~~~s~lnL~~~~~~k~~~n~ii~Pdf~Fe~mGIGGLd~EFs~IFRRAF 238 (744)
T KOG0741|consen 159 DPGISEGESAVTKRQKIERGLLLGNTQIVFEKAENSSLNLIGKSKTKPASNSIINPDFNFESMGIGGLDKEFSDIFRRAF 238 (744)
T ss_pred ccccccCCcccccccceeeeEeecCcEEEEEeccCcceEeeccccccchhccccCCCCChhhcccccchHHHHHHHHHHH
Confidence 3 13588899998855322111 011111 1333444 489999999998 8888
Q ss_pred HccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCe-EEEEechhhhhhccchhHHHHHHHHHHHHhc---
Q 004267 225 ELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF-FFCINGPEIMSKLAGESESNLRKAFEEAEKN--- 300 (764)
Q Consensus 225 ~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~-~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~--- 300 (764)
......|++.+++|+.+-+|+|||||||||||.+||.|...+++. ...|||++++++|+|++++++|.+|.+|+..
T Consensus 239 AsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~ 318 (744)
T KOG0741|consen 239 ASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENVRKLFADAEEEQRR 318 (744)
T ss_pred HhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHHHHHHHhHHHHHHh
Confidence 888899999999999999999999999999999999999999865 5789999999999999999999999999763
Q ss_pred -----CCeEEEEccccccCCCCCCCc--hHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCChhhhccCCcceEEEe
Q 004267 301 -----APSIIFIDEIDSIAPKREKTH--GEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDI 373 (764)
Q Consensus 301 -----~p~il~iDEid~l~~~~~~~~--~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~rf~~~i~i 373 (764)
.-.||++||||++|.+|++.. ..+...+++||++.||+..+-.+++|||+||+.+.||+||.|||||..++++
T Consensus 319 ~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~DlIDEALLRPGRlEVqmEI 398 (744)
T KOG0741|consen 319 LGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDLIDEALLRPGRLEVQMEI 398 (744)
T ss_pred hCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchhhHHHHhcCCCceEEEEEE
Confidence 347999999999999998754 4678899999999999999999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHhcCCC----CCCchhhhHHhhhcCCCchHHHHHHHHHHHHHHHHhhccccccccchhhHHHhhhh
Q 004267 374 GVPDEVGRLEVLRIHTKNMK----LSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSM 449 (764)
Q Consensus 374 ~~p~~~~R~~il~~~~~~~~----l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (764)
..||+..|++||++|+++|. +..++|++++|.+|.+|+|+++..+++.|...++.+....- .....+....+.+
T Consensus 399 sLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA~S~A~nR~vk~~--~~~~~~~~~~e~l 476 (744)
T KOG0741|consen 399 SLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSAQSFAMNRHVKAG--GKVEVDPVAIENL 476 (744)
T ss_pred eCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHHHHHHHHhhhccC--cceecCchhhhhe
Confidence 99999999999999999885 56899999999999999999999999999988887765432 1133445556788
Q ss_pred cccchhhhccccccCCCCcce-----eeeeccCccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCC
Q 004267 450 AVSNEHFQTALGTSNPSALRE-----TVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPP 524 (764)
Q Consensus 450 ~~~~~~~~~al~~~~ps~~~~-----~~~~~~~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~Gpp 524 (764)
.+++.||..|+..++|+.... ..+...-+.|..- +.+.+.+ ........+....++-..+||+|||
T Consensus 477 kV~r~DFl~aL~dVkPAFG~see~l~~~~~~Gmi~~g~~-----v~~il~~----G~llv~qvk~s~~s~lvSvLl~Gp~ 547 (744)
T KOG0741|consen 477 KVTRGDFLNALEDVKPAFGISEEDLERFVMNGMINWGPP-----VTRILDD----GKLLVQQVKNSERSPLVSVLLEGPP 547 (744)
T ss_pred eecHHHHHHHHHhcCcccCCCHHHHHHHHhCCceeeccc-----HHHHHhh----HHHHHHHhhccccCcceEEEEecCC
Confidence 999999999999999875321 0111222334221 1111110 0011112222234555679999999
Q ss_pred CCChhHHHHHHHHHhCCeeEEEecccchhcccCcch----HHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcc
Q 004267 525 GCGKTLLAKAIANECQANFISVKGPELLTMWFGESE----ANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGA 600 (764)
Q Consensus 525 GtGKT~lak~lA~~~~~~~i~v~~~~l~~~~~g~se----~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~ 600 (764)
|+|||+||..+|..+++||+.+-.++-+ +|-+| ..++.+|+.|++++-+||++|+|+.|+..-.-+ ..+
T Consensus 548 ~sGKTaLAA~iA~~S~FPFvKiiSpe~m---iG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~vpIG----PRf 620 (744)
T KOG0741|consen 548 GSGKTALAAKIALSSDFPFVKIISPEDM---IGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYVPIG----PRF 620 (744)
T ss_pred CCChHHHHHHHHhhcCCCeEEEeChHHc---cCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhcccccC----chh
Confidence 9999999999999999999998877643 45444 479999999999999999999999998764332 346
Q ss_pred hHHHHHHHHHhhcCCCC-CCcEEEEecCCCCCCCCc-cCCCCCccceEEeecCCCH-HHHHHHHH
Q 004267 601 ADRVLNQLLTEMDGMSA-KKTVFIIGATNRPDIIDP-ALLRPGRLDQLIYIPLPDE-DSRHQIFK 662 (764)
Q Consensus 601 ~~~~~~~lL~~ld~~~~-~~~v~vi~aTn~~~~ld~-allrpgRf~~~i~~~~p~~-~~r~~Il~ 662 (764)
++-+++.|+..+...++ .++.+|++||++.+.|.. .++. .|+..+++|..+. ++..+++.
T Consensus 621 SN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vpnl~~~~~~~~vl~ 683 (744)
T KOG0741|consen 621 SNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILD--CFSSTIHVPNLTTGEQLLEVLE 683 (744)
T ss_pred hHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHH--hhhheeecCccCchHHHHHHHH
Confidence 67777777777777654 468999999999888765 4445 9999999997654 55555553
No 8
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-62 Score=497.64 Aligned_cols=255 Identities=47% Similarity=0.810 Sum_probs=246.1
Q ss_pred eeeccCccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccc
Q 004267 472 VVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 551 (764)
Q Consensus 472 ~~~~~~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l 551 (764)
..+.|+++++||||++...+.+++.|+.|+++|+.|.++|+.||+|+|||||||||||+||||+|++.++.||.+.||+|
T Consensus 142 v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSEl 221 (406)
T COG1222 142 VEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSEL 221 (406)
T ss_pred eccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHH
Confidence 45779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccCcchHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCC
Q 004267 552 LTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPD 631 (764)
Q Consensus 552 ~~~~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~ 631 (764)
+.||+|++.+.||++|+.|+..+||||||||||+++.+|..+..+++....|.+-+||++|||+.+.++|=||+||||+|
T Consensus 222 VqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D 301 (406)
T COG1222 222 VQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPD 301 (406)
T ss_pred HHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCcc
Confidence 99999999999999999999999999999999999999988877777788999999999999999999999999999999
Q ss_pred CCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHhH
Q 004267 632 IIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDI 711 (764)
Q Consensus 632 ~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~ 711 (764)
.||||||||||||+.|+||+||.+.|.+||+.|.+++.+..++|++.||+.|+|+|||||+++|.+|+|.|+|+.
T Consensus 302 ~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~----- 376 (406)
T COG1222 302 ILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRER----- 376 (406)
T ss_pred ccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhc-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred HHHhhhcCCCccccccccccccccccHHHHHHHHHhcCCCC
Q 004267 712 ERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRSI 752 (764)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~s~ 752 (764)
...||++||.+|.+++-...
T Consensus 377 ---------------------R~~Vt~~DF~~Av~KV~~~~ 396 (406)
T COG1222 377 ---------------------RDEVTMEDFLKAVEKVVKKK 396 (406)
T ss_pred ---------------------cCeecHHHHHHHHHHHHhcc
Confidence 23799999999999987755
No 9
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-54 Score=442.41 Aligned_cols=279 Identities=42% Similarity=0.688 Sum_probs=249.3
Q ss_pred eeeccCccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccc
Q 004267 472 VVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 551 (764)
Q Consensus 472 ~~~~~~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l 551 (764)
+...|+++|+||.|++++|+.|++.|..|+..|+.|+. .++|.+|+|++||||||||+||||+|.+|+..|+.|+.+.+
T Consensus 203 l~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~G-irrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstl 281 (491)
T KOG0738|consen 203 LQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKG-IRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTL 281 (491)
T ss_pred hccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhh-cccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhh
Confidence 44678999999999999999999999999999999987 56888999999999999999999999999999999999999
Q ss_pred hhcccCcchHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCC----CCcEEEEecC
Q 004267 552 LTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSA----KKTVFIIGAT 627 (764)
Q Consensus 552 ~~~~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~----~~~v~vi~aT 627 (764)
.+||-|+||+.||-+|+.|+..+|++|||||||+|+++||.+ +.+++++|+.++||.+|||+.. .+.|+|+|||
T Consensus 282 tSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s--~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAAT 359 (491)
T KOG0738|consen 282 TSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGS--SEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAAT 359 (491)
T ss_pred hhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCc--cchhHHHHHHHHHHHHhhccccccccceeEEEEecc
Confidence 999999999999999999999999999999999999999886 4467899999999999999853 3459999999
Q ss_pred CCCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q 004267 628 NRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENI 707 (764)
Q Consensus 628 n~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~sg~di~~~~~~a~~~a~~~~~ 707 (764)
|.||.||+||+| ||.+.||+|+||.++|..+++..++..+++++++++.||+.++||||+||.++|++|.|.++||.+
T Consensus 360 N~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i 437 (491)
T KOG0738|consen 360 NFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRKI 437 (491)
T ss_pred CCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HHhHHHHhhhcCCCccccccccccccccccHHHHHHHHHhcCCCCCCcccccccccC
Q 004267 708 EKDIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRSICSDAAAVPRYWI 764 (764)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~s~~~~~~~~~~~~~ 764 (764)
......+.. .-..++...+|+++||++|+++++||+|...-+.+..|.
T Consensus 438 ~g~~~~ei~---------~lakE~~~~pv~~~Dfe~Al~~v~pSvs~~d~~k~ekW~ 485 (491)
T KOG0738|consen 438 AGLTPREIR---------QLAKEEPKMPVTNEDFEEALRKVRPSVSAADLEKYEKWM 485 (491)
T ss_pred hcCCcHHhh---------hhhhhccccccchhhHHHHHHHcCcCCCHHHHHHHHHHH
Confidence 543211110 001112235799999999999999999546666677773
No 10
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-52 Score=426.20 Aligned_cols=246 Identities=51% Similarity=0.860 Sum_probs=230.6
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhhh
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~ 280 (764)
..++++|+|||||++|+++|+|.+++|+.+|++|+.+||.||+|||||||||||||+|||++|++.++.|+.+.|++++.
T Consensus 144 e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVq 223 (406)
T COG1222 144 EKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQ 223 (406)
T ss_pred cCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHH---HHHHHHHHHHhhcccCCCeEEEEEecCCCCCC
Q 004267 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVE---RRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 357 (764)
Q Consensus 281 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~---~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~l 357 (764)
+|.|+....+|.+|+-|+.+.||||||||||++..+|-.....-+ +|..-+|++.||++..+++|-||+|||+++.+
T Consensus 224 KYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~L 303 (406)
T COG1222 224 KYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDIL 303 (406)
T ss_pred HHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCcccc
Confidence 999999999999999999999999999999999998865433323 45667888899999999999999999999999
Q ss_pred ChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCCCchhhhHHhhhcCCCchHHHHHHHHHHHHHHHHhhccccccc
Q 004267 358 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE 437 (764)
Q Consensus 358 d~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 437 (764)
||||.||||||+.|++|.|+.++|.+||++|+++|.+.+++|++.+++.+.|++|+|+.++|.+|.+.++|+..
T Consensus 304 DPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R------ 377 (406)
T COG1222 304 DPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERR------ 377 (406)
T ss_pred ChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhcc------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998763
Q ss_pred cchhhHHHhhhhcccchhhhcccccc
Q 004267 438 DETIDAEILNSMAVSNEHFQTALGTS 463 (764)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~al~~~ 463 (764)
..++++||..|..++
T Consensus 378 -----------~~Vt~~DF~~Av~KV 392 (406)
T COG1222 378 -----------DEVTMEDFLKAVEKV 392 (406)
T ss_pred -----------CeecHHHHHHHHHHH
Confidence 347888888887655
No 11
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-50 Score=388.40 Aligned_cols=264 Identities=41% Similarity=0.734 Sum_probs=246.1
Q ss_pred eccCccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccchh
Q 004267 474 EVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 553 (764)
Q Consensus 474 ~~~~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~~ 553 (764)
.+|+-+++-+||++...+.+++.++.|.+||+.|..+|+..|+|+|||||||||||.||+++|....+.||.++|+++..
T Consensus 140 KvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvq 219 (404)
T KOG0728|consen 140 KVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ 219 (404)
T ss_pred hCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHH
Confidence 45777889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcchHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCCCC
Q 004267 554 MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDII 633 (764)
Q Consensus 554 ~~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~l 633 (764)
+|+|+..+.+|++|-.||..+|+|||.||||++.+.|..++++++....|.+-+||++|||++..+++-||+||||.|.|
T Consensus 220 k~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridil 299 (404)
T KOG0728|consen 220 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL 299 (404)
T ss_pred HHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccc
Confidence 99999999999999999999999999999999999998877666777889999999999999999999999999999999
Q ss_pred CccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 004267 634 DPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIER 713 (764)
Q Consensus 634 d~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~ 713 (764)
|||++||||+|+.|+||+|+.++|.+|++.+.+++++...+++..+|+...|.|||+++.+|.+|++.|+|+.
T Consensus 300 d~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrer------- 372 (404)
T KOG0728|consen 300 DPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRER------- 372 (404)
T ss_pred cHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHh-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred HhhhcCCCccccccccccccccccHHHHHHHHHhcCCCCCCccccccccc
Q 004267 714 ERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRSICSDAAAVPRYW 763 (764)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~s~~~~~~~~~~~~ 763 (764)
...+|+|||+-|..++-..-+...-...+-|
T Consensus 373 -------------------rvhvtqedfemav~kvm~k~~e~nms~~kl~ 403 (404)
T KOG0728|consen 373 -------------------RVHVTQEDFEMAVAKVMQKDSEKNMSIKKLW 403 (404)
T ss_pred -------------------hccccHHHHHHHHHHHHhccccccchHHHhh
Confidence 2369999999999988766533333334444
No 12
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-50 Score=387.45 Aligned_cols=251 Identities=44% Similarity=0.748 Sum_probs=240.4
Q ss_pred eccCccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccchh
Q 004267 474 EVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 553 (764)
Q Consensus 474 ~~~~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~~ 553 (764)
+.|++++.||||++-.|+.+++.++.|+.+.+.+++.|+.||+|+|+|||||||||+|||++|+...+.||.+.|+++..
T Consensus 148 ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvq 227 (408)
T KOG0727|consen 148 EKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQ 227 (408)
T ss_pred CCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcchHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCCCC
Q 004267 554 MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDII 633 (764)
Q Consensus 554 ~~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~l 633 (764)
+|.|+..+.+|.+|..|+..+|+||||||||+++.+|-....++.....|++-+||++|||+....+|-||+||||.+.|
T Consensus 228 kylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradtl 307 (408)
T KOG0727|consen 228 KYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADTL 307 (408)
T ss_pred HHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCccccc
Confidence 99999999999999999999999999999999999998876677778899999999999999999999999999999999
Q ss_pred CccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 004267 634 DPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIER 713 (764)
Q Consensus 634 d~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~ 713 (764)
|||++||||+|+.|+||+||..+++-+|.....++.+++++|++.+..+.+..||+||.++|++|++.|+|++
T Consensus 308 dpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~n------- 380 (408)
T KOG0727|consen 308 DPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVREN------- 380 (408)
T ss_pred CHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhc-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred HhhhcCCCccccccccccccccccHHHHHHHHHhcCC
Q 004267 714 ERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARR 750 (764)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~ 750 (764)
.-.|...||++|.+..-.
T Consensus 381 -------------------ryvvl~kd~e~ay~~~vk 398 (408)
T KOG0727|consen 381 -------------------RYVVLQKDFEKAYKTVVK 398 (408)
T ss_pred -------------------ceeeeHHHHHHHHHhhcC
Confidence 236899999999986543
No 13
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-48 Score=418.27 Aligned_cols=272 Identities=43% Similarity=0.756 Sum_probs=248.8
Q ss_pred ccccccCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEec
Q 004267 196 REDEDRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCING 275 (764)
Q Consensus 196 ~~~~~~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~ 275 (764)
++....+++++|+||||+++...++..+|.+|.++|++|+.+|+..|.||||+||||||||.||+++|++.+..|+.|.|
T Consensus 499 REGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKG 578 (802)
T KOG0733|consen 499 REGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKG 578 (802)
T ss_pred cccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecC
Confidence 44445679999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCC
Q 004267 276 PEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPN 355 (764)
Q Consensus 276 ~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~ 355 (764)
++++++|+|+++..+|.+|+.|+.+.||||||||+|+|++.|+........|+++||+..||++..+.+|.|||+||+|+
T Consensus 579 PELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPD 658 (802)
T KOG0733|consen 579 PELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPD 658 (802)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCc
Confidence 99999999999999999999999999999999999999999998888889999999999999999999999999999999
Q ss_pred CCChhhhccCCcceEEEecCCChHHHHHHHHHHhc--CCCCCCchhhhHHhhhcC--CCchHHHHHHHHHHHHHHHHhhc
Q 004267 356 SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTK--NMKLSDDVDLERIAKDTH--GYVGADLAALCTEAALQCIREKM 431 (764)
Q Consensus 356 ~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~--~~~l~~~~~l~~la~~t~--g~~~~dl~~l~~~a~~~~~~~~~ 431 (764)
.|||++.||||||+.++++.|+.++|.+||+.+++ +.++..+++++.+++.+. ||+|+||.+||++|++.++++..
T Consensus 659 iIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~ 738 (802)
T KOG0733|consen 659 IIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRESL 738 (802)
T ss_pred ccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 788999999999999887 99999999999999999998876
Q ss_pred cccccccchhhHHHhhhhcccchhhhccccccCCCCc
Q 004267 432 DVIDLEDETIDAEILNSMAVSNEHFQTALGTSNPSAL 468 (764)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~ps~~ 468 (764)
..++.......... ....++..||+.|++.++|+..
T Consensus 739 ~~~~~~~~~~~~~~-~~~~~t~~hF~eA~~~i~pSv~ 774 (802)
T KOG0733|consen 739 FEIDSSEDDVTVRS-STIIVTYKHFEEAFQRIRPSVS 774 (802)
T ss_pred hhccccCcccceee-eeeeecHHHHHHHHHhcCCCcc
Confidence 54443322221111 1345778899999999988753
No 14
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-49 Score=416.60 Aligned_cols=244 Identities=40% Similarity=0.709 Sum_probs=229.5
Q ss_pred ccCccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccchhc
Q 004267 475 VPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM 554 (764)
Q Consensus 475 ~~~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~~~ 554 (764)
..+++|+|+-|.++.|++|.+.+.+ ++.|+.|.++|-+.|+|+||+||||||||+||+|+|++.+.||+...|+++-.+
T Consensus 298 ~~nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm 376 (752)
T KOG0734|consen 298 MKNVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEM 376 (752)
T ss_pred hcccccccccChHHHHHHHHHHHHH-hcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhh
Confidence 3478999999999999999999886 789999999999999999999999999999999999999999999999999999
Q ss_pred ccCcchHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCCCCC
Q 004267 555 WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIID 634 (764)
Q Consensus 555 ~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld 634 (764)
|||...+.||.+|+.|++.+||||||||||++.++|.... ..+.+..+||||.+|||+..+.+|+||+|||+|+.||
T Consensus 377 ~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~---~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD 453 (752)
T KOG0734|consen 377 FVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSD---QHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALD 453 (752)
T ss_pred hhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccH---HHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhh
Confidence 9999999999999999999999999999999999987642 2278999999999999999999999999999999999
Q ss_pred ccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 004267 635 PALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERE 714 (764)
Q Consensus 635 ~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~ 714 (764)
+||+||||||++|.||.||...|.+||+.|+++.+++.++|+..+|+-|.|||||||.|+++.|+..|..+.
T Consensus 454 ~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dg-------- 525 (752)
T KOG0734|consen 454 KALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDG-------- 525 (752)
T ss_pred HHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcC--------
Confidence 999999999999999999999999999999999999999999999999999999999999999998887654
Q ss_pred hhhcCCCccccccccccccccccHHHHHHHHHhc
Q 004267 715 RRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFA 748 (764)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~ 748 (764)
...|||+|++-|-.++
T Consensus 526 ------------------a~~VtM~~LE~akDrI 541 (752)
T KOG0734|consen 526 ------------------AEMVTMKHLEFAKDRI 541 (752)
T ss_pred ------------------cccccHHHHhhhhhhe
Confidence 2368999998887665
No 15
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-48 Score=423.46 Aligned_cols=251 Identities=49% Similarity=0.849 Sum_probs=240.1
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhhh
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~ 280 (764)
..++++|+||||+++.+.+|++.+.+|++||+.|.++|+.+++|||||||||||||++||++|++.+..|+.|.|+++++
T Consensus 427 e~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~s 506 (693)
T KOG0730|consen 427 EMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFS 506 (693)
T ss_pred cCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHH
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCChh
Q 004267 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPA 360 (764)
Q Consensus 281 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld~a 360 (764)
+|+|++|..++.+|+.|+...|||+|+||||+++..|+...+++..|+++||++.||++....+|+|||+||+|+.||++
T Consensus 507 k~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~A 586 (693)
T KOG0730|consen 507 KYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPA 586 (693)
T ss_pred HhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHH
Confidence 99999999999999999999999999999999999998777788999999999999999999999999999999999999
Q ss_pred hhccCCcceEEEecCCChHHHHHHHHHHhcCCCCCCchhhhHHhhhcCCCchHHHHHHHHHHHHHHHHhhccccccccch
Q 004267 361 LRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDET 440 (764)
Q Consensus 361 l~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~ 440 (764)
+.||||||+.|++|.||.+.|++||+.++++|++.+++|+++||..|+||+|+|+..+|++|+..++++..+
T Consensus 587 LlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~-------- 658 (693)
T KOG0730|consen 587 LLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRESIE-------- 658 (693)
T ss_pred HcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcc--------
Confidence 999999999999999999999999999999999999999999999999999999999999999999987643
Q ss_pred hhHHHhhhhcccchhhhccccccCCC
Q 004267 441 IDAEILNSMAVSNEHFQTALGTSNPS 466 (764)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~al~~~~ps 466 (764)
...++.+||+.+++..+++
T Consensus 659 -------a~~i~~~hf~~al~~~r~s 677 (693)
T KOG0730|consen 659 -------ATEITWQHFEEALKAVRPS 677 (693)
T ss_pred -------cccccHHHHHHHHHhhccc
Confidence 3457788999988877665
No 16
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.3e-49 Score=386.03 Aligned_cols=254 Identities=39% Similarity=0.702 Sum_probs=240.6
Q ss_pred eeccCccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccch
Q 004267 473 VEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 552 (764)
Q Consensus 473 ~~~~~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~ 552 (764)
...|.-++.||||++...+.+++.++.|+.||+.+..+|++||+|++|||+||||||.||||+|+...+.|+.+-|++|+
T Consensus 177 eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLi 256 (440)
T KOG0726|consen 177 EKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELI 256 (440)
T ss_pred ccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHH
Confidence 34567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCcchHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCCC
Q 004267 553 TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDI 632 (764)
Q Consensus 553 ~~~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ 632 (764)
.+|.|+..+.+|++|+.|...+|+|+|+||||++..+|-.+.+.......|.+-+||+++||+...+.|-||+|||+.+.
T Consensus 257 QkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~ 336 (440)
T KOG0726|consen 257 QKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIET 336 (440)
T ss_pred HHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEecccccc
Confidence 99999999999999999999999999999999999999877666666778888899999999999999999999999999
Q ss_pred CCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHhHH
Q 004267 633 IDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIE 712 (764)
Q Consensus 633 ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~ 712 (764)
|||||+||||+|+.|+||+||...+..||.+|..++.+..+++++.+....+.+|||||+++|.+|++.|+|+.-
T Consensus 337 LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRerR----- 411 (440)
T KOG0726|consen 337 LDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRERR----- 411 (440)
T ss_pred cCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHHH-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999861
Q ss_pred HHhhhcCCCccccccccccccccccHHHHHHHHHhcCCCC
Q 004267 713 RERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRSI 752 (764)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~s~ 752 (764)
..+|++||.+|.+++--+-
T Consensus 412 ---------------------m~vt~~DF~ka~e~V~~~K 430 (440)
T KOG0726|consen 412 ---------------------MKVTMEDFKKAKEKVLYKK 430 (440)
T ss_pred ---------------------hhccHHHHHHHHHHHHHhc
Confidence 2699999999999886553
No 17
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.6e-49 Score=387.95 Aligned_cols=282 Identities=34% Similarity=0.636 Sum_probs=244.5
Q ss_pred eeeeccCccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEeccc
Q 004267 471 TVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPE 550 (764)
Q Consensus 471 ~~~~~~~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~ 550 (764)
.+.+.|++.|+|+.|++.+|+.|++.|..|++.|..|.. +..|.+|+||||||||||+.||||+|.+.+..|++|+.++
T Consensus 123 Iv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSD 201 (439)
T KOG0739|consen 123 IVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSD 201 (439)
T ss_pred hhccCCCCchhhhccchhHHHHHHhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHH
Confidence 456889999999999999999999999999999999987 6778899999999999999999999999999999999999
Q ss_pred chhcccCcchHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCC-CCCcEEEEecCCC
Q 004267 551 LLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-AKKTVFIIGATNR 629 (764)
Q Consensus 551 l~~~~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~-~~~~v~vi~aTn~ 629 (764)
|+++|.|+||+.++++|+.||.+.|+||||||||++++.|+... +.+++|+..+||.+|.|+. +.++|+|++|||-
T Consensus 202 LvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enE---seasRRIKTEfLVQMqGVG~d~~gvLVLgATNi 278 (439)
T KOG0739|consen 202 LVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENE---SEASRRIKTEFLVQMQGVGNDNDGVLVLGATNI 278 (439)
T ss_pred HHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCc---hHHHHHHHHHHHHhhhccccCCCceEEEecCCC
Confidence 99999999999999999999999999999999999999887653 4578999999999999985 4679999999999
Q ss_pred CCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCC-CCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 004267 630 PDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPV-SKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIE 708 (764)
Q Consensus 630 ~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~-~~~~~l~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~ 708 (764)
||.||.|+.| ||++.||+|+|+..+|..+|+.++...+. ..+.|+..|+++|+||||+||.-++++|.|..+|+...
T Consensus 279 Pw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRkvqs 356 (439)
T KOG0739|consen 279 PWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRKVQS 356 (439)
T ss_pred chhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHHhhh
Confidence 9999999999 99999999999999999999999987653 35679999999999999999999999999999998655
Q ss_pred HhHHHHhhhc------------CC---Cccc-----cccccccccccccHHHHHHHHHhcCCCCCCccccc
Q 004267 709 KDIERERRRR------------DN---PEAM-----DEDAAEDEVSEIKAAHFEESMKFARRSICSDAAAV 759 (764)
Q Consensus 709 ~~~~~~~~~~------------~~---~~~~-----~~~~~~~~~~~i~~~~f~~a~~~~~~s~~~~~~~~ 759 (764)
...-...... +. .+.+ +-...+--.+.||+.||.+++...||.| ++.|+.
T Consensus 357 AthFk~v~~~s~~~~~~~lltpcspgd~ga~em~w~dv~~dkl~eP~vt~~D~~k~l~~tkPTv-n~~Dl~ 426 (439)
T KOG0739|consen 357 ATHFKKVSGPSNPSEVDDLLTPCSPGDPGAIEMSWMDVPADKLLEPPVTMRDFLKSLSRTKPTV-NEDDLL 426 (439)
T ss_pred hhhhhccCCCCChhhhccccCCCCCCCcchhhhhhccCCHhhccCCCccHHHHHHHHhhcCCCC-CHHHHH
Confidence 4322111110 11 1111 1111223467899999999999999999 877653
No 18
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-48 Score=379.63 Aligned_cols=264 Identities=38% Similarity=0.690 Sum_probs=246.1
Q ss_pred cCCCCcceeeeeccCccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCe
Q 004267 463 SNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN 542 (764)
Q Consensus 463 ~~ps~~~~~~~~~~~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~ 542 (764)
+.|+...-...+.|++++.|+||..+..+.|++.++.|+.+|+.|..+|+.||+|+|+|||||||||++|+++|+..++-
T Consensus 159 idpsvtmm~veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdac 238 (435)
T KOG0729|consen 159 IDPSVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDAC 238 (435)
T ss_pred CCCceeEEEeecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCce
Confidence 34554444556789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecccchhcccCcchHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEE
Q 004267 543 FISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVF 622 (764)
Q Consensus 543 ~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~ 622 (764)
||.+-|++|..+|+|+..+.+|++|+.|+....|||||||||++.+.|-....+......|.+-+|+++|||+.+.+++-
T Consensus 239 firvigselvqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnik 318 (435)
T KOG0729|consen 239 FIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIK 318 (435)
T ss_pred EEeehhHHHHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeE
Confidence 99999999999999999999999999999999999999999999999877655555667888899999999999999999
Q ss_pred EEecCCCCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q 004267 623 IIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYA 702 (764)
Q Consensus 623 vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~sg~di~~~~~~a~~~a 702 (764)
|++|||||+.|||||+||||+|+.++|.+||.+.|.+||+.|.+.+.+..|+.++.+|+.+..-|||+|+.+|.+|+|.|
T Consensus 319 vlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfa 398 (435)
T KOG0729|consen 319 VLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFA 398 (435)
T ss_pred EEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHhhhcCCCccccccccccccccccHHHHHHHHHhcCCCC
Q 004267 703 IRENIEKDIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRSI 752 (764)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~s~ 752 (764)
++..- ...|..||.+|+.++-...
T Consensus 399 irarr--------------------------k~atekdfl~av~kvvkgy 422 (435)
T KOG0729|consen 399 IRARR--------------------------KVATEKDFLDAVNKVVKGY 422 (435)
T ss_pred HHHHh--------------------------hhhhHHHHHHHHHHHHHHH
Confidence 98651 2579999999999987766
No 19
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-48 Score=376.37 Aligned_cols=253 Identities=42% Similarity=0.716 Sum_probs=240.2
Q ss_pred eeccCccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccch
Q 004267 473 VEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 552 (764)
Q Consensus 473 ~~~~~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~ 552 (764)
.+.|.-.++||||++...+.|.+.+..|+.|++.|.++|++||+|+|+|||||||||++|+++|...+..|+.+-|+.|.
T Consensus 163 DekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLV 242 (424)
T KOG0652|consen 163 DEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLV 242 (424)
T ss_pred ccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHH
Confidence 34567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCcchHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCCC
Q 004267 553 TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDI 632 (764)
Q Consensus 553 ~~~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ 632 (764)
.+|+|+..+.+|..|..|+..+|+||||||+|++..+|..+...+.....|.+-+||++|||+.+...|-||+||||.+.
T Consensus 243 QMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDi 322 (424)
T KOG0652|consen 243 QMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDI 322 (424)
T ss_pred hhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccc
Confidence 99999999999999999999999999999999999999887666666778889999999999999999999999999999
Q ss_pred CCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHhHH
Q 004267 633 IDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIE 712 (764)
Q Consensus 633 ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~ 712 (764)
|||||+|.||+|+.|+||.|+++.|.+|++.|.+++.+.+|+++++||+.|++|+|++.+++|-+|+|.|+|+.
T Consensus 323 LDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~------ 396 (424)
T KOG0652|consen 323 LDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRG------ 396 (424)
T ss_pred cCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhcc------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred HHhhhcCCCccccccccccccccccHHHHHHHHHhcCCC
Q 004267 713 RERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRS 751 (764)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~s 751 (764)
...|+.+||.+++.++...
T Consensus 397 --------------------atev~heDfmegI~eVqak 415 (424)
T KOG0652|consen 397 --------------------ATEVTHEDFMEGILEVQAK 415 (424)
T ss_pred --------------------cccccHHHHHHHHHHHHHh
Confidence 3469999999999887543
No 20
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=1.2e-45 Score=410.57 Aligned_cols=395 Identities=25% Similarity=0.409 Sum_probs=298.3
Q ss_pred CCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCChhhhccCCcceEEEecCCChHH
Q 004267 301 APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVG 380 (764)
Q Consensus 301 ~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~ 380 (764)
.|.++++.|++.++.+ . .++..|.++...+....+.+|+.+.+ ..+++.|.+ +-..++++.|+.++
T Consensus 81 ~~~~~vl~d~h~~~~~-----~----~~~r~l~~l~~~~~~~~~~~i~~~~~--~~~p~el~~---~~~~~~~~lP~~~e 146 (489)
T CHL00195 81 TPALFLLKDFNRFLND-----I----SISRKLRNLSRILKTQPKTIIIIASE--LNIPKELKD---LITVLEFPLPTESE 146 (489)
T ss_pred CCcEEEEecchhhhcc-----h----HHHHHHHHHHHHHHhCCCEEEEEcCC--CCCCHHHHh---ceeEEeecCcCHHH
Confidence 4789999999988732 1 13334444433343444445544432 457888875 55778999999999
Q ss_pred HHHHHHHHhcCCCC-CCchhhhHHhhhcCCCchHHHHHHHHHHHHHHHHhhccccccccchhhHHHhhhhcccchhhhcc
Q 004267 381 RLEVLRIHTKNMKL-SDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVSNEHFQTA 459 (764)
Q Consensus 381 R~~il~~~~~~~~l-~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 459 (764)
..++++........ .++.+++.+++.+.|++..++..++..+.... . .++.+ .+.. ... ... ..
T Consensus 147 i~~~l~~~~~~~~~~~~~~~~~~l~~~~~gls~~~~~~~~~~~~~~~--~---~~~~~--~~~~-i~~----~k~---q~ 211 (489)
T CHL00195 147 IKKELTRLIKSLNIKIDSELLENLTRACQGLSLERIRRVLSKIIATY--K---TIDEN--SIPL-ILE----EKK---QI 211 (489)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc--C---CCChh--hHHH-HHH----HHH---HH
Confidence 99999877654332 34557899999999999999988877643210 0 01100 0000 000 000 00
Q ss_pred ccccCCCCcceeeeeccCccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHh
Q 004267 460 LGTSNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC 539 (764)
Q Consensus 460 l~~~~ps~~~~~~~~~~~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~ 539 (764)
+.. ...- ....+.++|++|||++.+|+.+.+.... .......+|+.+++|+|||||||||||++|+++|+++
T Consensus 212 ~~~---~~~l--e~~~~~~~~~dvgGl~~lK~~l~~~~~~---~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~ 283 (489)
T CHL00195 212 ISQ---TEIL--EFYSVNEKISDIGGLDNLKDWLKKRSTS---FSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW 283 (489)
T ss_pred Hhh---hccc--cccCCCCCHHHhcCHHHHHHHHHHHHHH---hhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 100 0000 0112467899999999999988764321 2334567899999999999999999999999999999
Q ss_pred CCeeEEEecccchhcccCcchHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCC
Q 004267 540 QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKK 619 (764)
Q Consensus 540 ~~~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~ 619 (764)
+.+|+.++++++.++|+|+++.+++++|+.|+...||||||||||.++..+... ..++...+++++||+.|+. ...
T Consensus 284 ~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~--~d~~~~~rvl~~lL~~l~~--~~~ 359 (489)
T CHL00195 284 QLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESK--GDSGTTNRVLATFITWLSE--KKS 359 (489)
T ss_pred CCCEEEEEhHHhcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCC--CCchHHHHHHHHHHHHHhc--CCC
Confidence 999999999999999999999999999999999999999999999998765432 2245778999999999985 356
Q ss_pred cEEEEecCCCCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCC--CCcccHHHHHHHCCCCCHHHHHHHHHH
Q 004267 620 TVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPV--SKDVDLRALAKYTQGFSGADITEICQR 697 (764)
Q Consensus 620 ~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~--~~~~~l~~la~~~~g~sg~di~~~~~~ 697 (764)
+|+||+|||+++.|||+++||||||+.|+|++|+.++|.+||+.++++... ..+.|++.+|+.|+||||+||+++|++
T Consensus 360 ~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~e 439 (489)
T CHL00195 360 PVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIE 439 (489)
T ss_pred ceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHH
Confidence 799999999999999999999999999999999999999999999988643 357899999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHhhhcCCCccccccccccccccccHHHHHHHHHhcCCCCCCcc--ccccccc
Q 004267 698 ACKYAIRENIEKDIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRSICSDA--AAVPRYW 763 (764)
Q Consensus 698 a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~s~~~~~--~~~~~~~ 763 (764)
|+..|..+. ..++.+||..|++++.|+..+.. -...+.|
T Consensus 440 A~~~A~~~~---------------------------~~lt~~dl~~a~~~~~Pls~~~~e~i~~~~~W 480 (489)
T CHL00195 440 AMYIAFYEK---------------------------REFTTDDILLALKQFIPLAQTEKEQIEALQNW 480 (489)
T ss_pred HHHHHHHcC---------------------------CCcCHHHHHHHHHhcCCCcccCHHHHHHHHHH
Confidence 998887542 35899999999999999842333 2345566
No 21
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.5e-46 Score=417.65 Aligned_cols=249 Identities=44% Similarity=0.781 Sum_probs=231.9
Q ss_pred cCccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccchhcc
Q 004267 476 PNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW 555 (764)
Q Consensus 476 ~~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~~~~ 555 (764)
..+.|.|+.|++++|++|.|.|.+ +++|+.|.++|.++|+|+||+||||||||+||||+|++.+.||+.++|++++.++
T Consensus 306 t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~ 384 (774)
T KOG0731|consen 306 TGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMF 384 (774)
T ss_pred CCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHh
Confidence 458999999999999999999886 8999999999999999999999999999999999999999999999999999999
Q ss_pred cCcchHHHHHHHHHHhhCCCeEEEEecccchhhccC-CCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCCCCC
Q 004267 556 FGESEANVREIFDKARQSAPCVLFFDELDSIATQRG-SSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIID 634 (764)
Q Consensus 556 ~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~-~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld 634 (764)
+|.....+|.+|..|+..+|||+|+||||.+...|+ ...+..+...+..+||||.+|||+...++|+|+++||||+.||
T Consensus 385 ~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld 464 (774)
T KOG0731|consen 385 VGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILD 464 (774)
T ss_pred cccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccC
Confidence 999999999999999999999999999999999994 2333445667889999999999999999999999999999999
Q ss_pred ccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 004267 635 PALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIER 713 (764)
Q Consensus 635 ~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~ 713 (764)
+||+||||||++|++++||...|.+||+.|+++..++ +++|+..+|..|.||+||||.++|++|+..|.|+..
T Consensus 465 ~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~------ 538 (774)
T KOG0731|consen 465 PALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGL------ 538 (774)
T ss_pred HHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhcc------
Confidence 9999999999999999999999999999999999885 889999999999999999999999999999999862
Q ss_pred HhhhcCCCccccccccccccccccHHHHHHHHHhcCCC
Q 004267 714 ERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRS 751 (764)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~s 751 (764)
..|+..||+.|++.+.-.
T Consensus 539 --------------------~~i~~~~~~~a~~Rvi~G 556 (774)
T KOG0731|consen 539 --------------------REIGTKDLEYAIERVIAG 556 (774)
T ss_pred --------------------CccchhhHHHHHHHHhcc
Confidence 369999999999954433
No 22
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-45 Score=400.11 Aligned_cols=269 Identities=43% Similarity=0.745 Sum_probs=242.4
Q ss_pred cccCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhh
Q 004267 199 EDRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEI 278 (764)
Q Consensus 199 ~~~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l 278 (764)
.+++|+|+|+||||+++.|..|.+.|.+|++||++|.+ |+.+..|||||||||||||.+|+|+|.++...|+.|.|+++
T Consensus 663 APKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPEL 741 (953)
T KOG0736|consen 663 APKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPEL 741 (953)
T ss_pred CCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHH
Confidence 34689999999999999999999999999999999975 88889999999999999999999999999999999999999
Q ss_pred hhhccchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCC--CchHHHHHHHHHHHHHhhccc--CCCeEEEEEecCCC
Q 004267 279 MSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREK--THGEVERRIVSQLLTLMDGLK--SRAHVIVIGATNRP 354 (764)
Q Consensus 279 ~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~--~~~~~~~~v~~~Ll~~ld~~~--~~~~v~vI~atn~~ 354 (764)
+++|+|++|+++|.+|+.|+...|||||+||+|+++|+|+. +++.+-.|+++||+..||++. ....|+||||||+|
T Consensus 742 LNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRP 821 (953)
T KOG0736|consen 742 LNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRP 821 (953)
T ss_pred HHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCc
Confidence 99999999999999999999999999999999999999985 356778899999999999998 45689999999999
Q ss_pred CCCChhhhccCCcceEEEecCCCh-HHHHHHHHHHhcCCCCCCchhhhHHhhhcC-CCchHHHHHHHHHHHHHHHHhhcc
Q 004267 355 NSIDPALRRFGRFDREIDIGVPDE-VGRLEVLRIHTKNMKLSDDVDLERIAKDTH-GYVGADLAALCTEAALQCIREKMD 432 (764)
Q Consensus 355 ~~ld~al~r~~rf~~~i~i~~p~~-~~R~~il~~~~~~~~l~~~~~l~~la~~t~-g~~~~dl~~l~~~a~~~~~~~~~~ 432 (764)
+.+||+|.||||||+-+++++++. +.+..+|+..++++.+.+++++.++|+.++ .|+|+|+.++|..|.+.++++...
T Consensus 822 DLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~ 901 (953)
T KOG0736|consen 822 DLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIH 901 (953)
T ss_pred cccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998864 568899999999999999999999999875 799999999999999999998876
Q ss_pred ccccccchhhHHHhhhhcccchhhhccccccCCCCc
Q 004267 433 VIDLEDETIDAEILNSMAVSNEHFQTALGTSNPSAL 468 (764)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~ps~~ 468 (764)
.++.............+.++++||.++..+..|+-.
T Consensus 902 ~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~PSvS 937 (953)
T KOG0736|consen 902 DIESGTISEEEQESSSVRVTMEDFLKSAKRLQPSVS 937 (953)
T ss_pred HhhhccccccccCCceEEEEHHHHHHHHHhcCCccc
Confidence 554332222222335678999999999999988743
No 23
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-45 Score=377.57 Aligned_cols=270 Identities=39% Similarity=0.666 Sum_probs=236.7
Q ss_pred CccccccccchhhhhcccceeeccCCChhhhhhcc-CCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccchhcc
Q 004267 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFG-MSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW 555 (764)
Q Consensus 477 ~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~-~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~~~~ 555 (764)
.++|+||||++.+++.|++.|.+|+.+|+.|...+ +++++|+|||||||||||++|+++|++.+++|+.|.++.+.++|
T Consensus 88 ~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KW 167 (386)
T KOG0737|consen 88 GVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKW 167 (386)
T ss_pred eeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhh
Confidence 68999999999999999999999999999997544 57889999999999999999999999999999999999999999
Q ss_pred cCcchHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCC--cEEEEecCCCCCCC
Q 004267 556 FGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKK--TVFIIGATNRPDII 633 (764)
Q Consensus 556 ~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~--~v~vi~aTn~~~~l 633 (764)
+|++++.++.+|..|.+..|||||+||+|++++.|+.+ .+++...+.++|...+||+..+. +|+|+||||||..|
T Consensus 168 fgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~---dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~Dl 244 (386)
T KOG0737|consen 168 FGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRST---DHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFDL 244 (386)
T ss_pred HHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccc---hHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCccH
Confidence 99999999999999999999999999999999999543 25678889999999999997654 59999999999999
Q ss_pred CccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHhH--
Q 004267 634 DPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDI-- 711 (764)
Q Consensus 634 d~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~-- 711 (764)
|.|++| |+.+.++|++|+..+|.+|++..+++..+++++|+.++|..|+||||+||+++|+.|+...+++.+....
T Consensus 245 DeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~~~~~~ 322 (386)
T KOG0737|consen 245 DEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLVSETGL 322 (386)
T ss_pred HHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHHhcccc
Confidence 999999 9999999999999999999999999999999999999999999999999999999999999999987740
Q ss_pred -HHHhhhcCCCccccccccccccccccHHHHHHHHHhcCCCC
Q 004267 712 -ERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRSI 752 (764)
Q Consensus 712 -~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~s~ 752 (764)
+......+. .........-...+++++||.+|...+.+|+
T Consensus 323 ~d~d~~~~d~-~~~~~~~~~~~~r~l~~eDf~~a~~~v~~~~ 363 (386)
T KOG0737|consen 323 LDLDKAIADL-KPTQAAASSCLLRPLEQEDFPKAINRVSASV 363 (386)
T ss_pred hhhhhhhhhc-cCCcccccccccCcccHHHHHHHHHhhhhHH
Confidence 000000000 0000000111256899999999999888886
No 24
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=9.9e-45 Score=395.54 Aligned_cols=254 Identities=44% Similarity=0.734 Sum_probs=237.0
Q ss_pred eeccCccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccch
Q 004267 473 VEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 552 (764)
Q Consensus 473 ~~~~~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~ 552 (764)
.+.|.++|+||||++.+++.+++.+.+|+.+++.|..+|+.+++|+|||||||||||++|+++|++++.+|+.+.++++.
T Consensus 137 ~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~ 216 (398)
T PTZ00454 137 SEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFV 216 (398)
T ss_pred cCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHH
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCcchHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCCC
Q 004267 553 TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDI 632 (764)
Q Consensus 553 ~~~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ 632 (764)
.+|+|++++.++.+|..|+...||||||||||.++..|.....+.+....+++.+||++||++....+++||+|||+++.
T Consensus 217 ~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~ 296 (398)
T PTZ00454 217 QKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADT 296 (398)
T ss_pred HHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchh
Confidence 99999999999999999999999999999999999887544333334567899999999999988889999999999999
Q ss_pred CCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHhHH
Q 004267 633 IDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIE 712 (764)
Q Consensus 633 ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~ 712 (764)
||||++||||||+.|+||+|+.++|..||+.+++++++..++|+..+|..|+||||+||.++|++|++.|+++.
T Consensus 297 LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~------ 370 (398)
T PTZ00454 297 LDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKN------ 370 (398)
T ss_pred CCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred HHhhhcCCCccccccccccccccccHHHHHHHHHhcCCCC
Q 004267 713 RERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRSI 752 (764)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~s~ 752 (764)
...|+++||++|+.++....
T Consensus 371 --------------------~~~i~~~df~~A~~~v~~~~ 390 (398)
T PTZ00454 371 --------------------RYVILPKDFEKGYKTVVRKT 390 (398)
T ss_pred --------------------CCccCHHHHHHHHHHHHhcc
Confidence 23799999999999986654
No 25
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-44 Score=401.18 Aligned_cols=247 Identities=43% Similarity=0.802 Sum_probs=234.1
Q ss_pred ccCccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccchhc
Q 004267 475 VPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM 554 (764)
Q Consensus 475 ~~~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~~~ 554 (764)
...++|.|+.|.+++|+.+.+.|.+ ++.|..|..+|...|+|++|+||||||||+|||++|++.+.||+++++++++.+
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVem 222 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 222 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhh
Confidence 3578999999999999999999875 788999999999999999999999999999999999999999999999999999
Q ss_pred ccCcchHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCCCCC
Q 004267 555 WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIID 634 (764)
Q Consensus 555 ~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld 634 (764)
|+|.....+|.+|.+|++++||||||||||++...|+.+.+.....-+..+||+|.||||+..+..|+||++|||||.+|
T Consensus 223 fVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD 302 (596)
T COG0465 223 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLD 302 (596)
T ss_pred hcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccch
Confidence 99999999999999999999999999999999999987766656666779999999999999889999999999999999
Q ss_pred ccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 004267 635 PALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERE 714 (764)
Q Consensus 635 ~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~ 714 (764)
|||+||||||+.|.++.||...|.+|++.|+++.+++.++|+..+|+.|.||+|+|+.+++++|+..|.|+.
T Consensus 303 ~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n-------- 374 (596)
T COG0465 303 PALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRN-------- 374 (596)
T ss_pred HhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhc--------
Confidence 999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred hhhcCCCccccccccccccccccHHHHHHHHHhc
Q 004267 715 RRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFA 748 (764)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~ 748 (764)
...|++.||++|..++
T Consensus 375 ------------------~~~i~~~~i~ea~drv 390 (596)
T COG0465 375 ------------------KKEITMRDIEEAIDRV 390 (596)
T ss_pred ------------------CeeEeccchHHHHHHH
Confidence 3468999999998876
No 26
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=1e-43 Score=345.38 Aligned_cols=245 Identities=38% Similarity=0.689 Sum_probs=218.8
Q ss_pred eccCccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccchh
Q 004267 474 EVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 553 (764)
Q Consensus 474 ~~~~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~~ 553 (764)
..+++.++|++|+++.|+.-+-.+.| +.+|+.|.+ ..|+++|||||||||||++||++|++.+.+|+.++..+|++
T Consensus 114 ~~~~it~ddViGqEeAK~kcrli~~y-LenPe~Fg~---WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liG 189 (368)
T COG1223 114 IISDITLDDVIGQEEAKRKCRLIMEY-LENPERFGD---WAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIG 189 (368)
T ss_pred hhccccHhhhhchHHHHHHHHHHHHH-hhChHHhcc---cCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHH
Confidence 35688999999999999875544443 567776655 56899999999999999999999999999999999999999
Q ss_pred cccCcchHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCCCC
Q 004267 554 MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDII 633 (764)
Q Consensus 554 ~~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~l 633 (764)
.|||+..+.|+++|++|++.+|||+||||+|+++-.|... +-.+...+++|.||++|||+..+.+|+.|||||+|+.|
T Consensus 190 ehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQ--elRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~L 267 (368)
T COG1223 190 EHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQ--ELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELL 267 (368)
T ss_pred HHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHH--HhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhc
Confidence 9999999999999999999999999999999999877653 23456788999999999999999999999999999999
Q ss_pred CccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHH-HHHHHHHHHHHHHHHHhHH
Q 004267 634 DPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITE-ICQRACKYAIRENIEKDIE 712 (764)
Q Consensus 634 d~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~sg~di~~-~~~~a~~~a~~~~~~~~~~ 712 (764)
|||+.+ ||...|+|.+|+.++|..|++.+++++|+.-+.+++.++..|.||||+||.. ++..|...|+.+.-
T Consensus 268 D~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed~----- 340 (368)
T COG1223 268 DPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAEDR----- 340 (368)
T ss_pred CHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhch-----
Confidence 999998 9999999999999999999999999999999999999999999999999974 66666666666541
Q ss_pred HHhhhcCCCccccccccccccccccHHHHHHHHHhcCCCC
Q 004267 713 RERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRSI 752 (764)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~s~ 752 (764)
..|+.+||++|+++-+++-
T Consensus 341 ---------------------e~v~~edie~al~k~r~~r 359 (368)
T COG1223 341 ---------------------EKVEREDIEKALKKERKRR 359 (368)
T ss_pred ---------------------hhhhHHHHHHHHHhhcccc
Confidence 2599999999999977775
No 27
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=6.3e-43 Score=383.93 Aligned_cols=256 Identities=49% Similarity=0.817 Sum_probs=239.1
Q ss_pred eeeeccCccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEeccc
Q 004267 471 TVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPE 550 (764)
Q Consensus 471 ~~~~~~~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~ 550 (764)
...+.|.+.|++|+|++..++.+.+.+.+|+.+++.|..+|+.+++|+|||||||||||++|+++|++++.+|+.+++++
T Consensus 121 ~~~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~ 200 (389)
T PRK03992 121 EVIESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSE 200 (389)
T ss_pred eecCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhcccCcchHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCC
Q 004267 551 LLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRP 630 (764)
Q Consensus 551 l~~~~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~ 630 (764)
+.++|+|++++.++.+|+.|+...||||||||||.++..|+...........+.+.++|++++++....+++||+|||++
T Consensus 201 l~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~ 280 (389)
T PRK03992 201 LVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRI 280 (389)
T ss_pred HhHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCCh
Confidence 99999999999999999999999999999999999998887654333445677889999999999888899999999999
Q ss_pred CCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 004267 631 DIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKD 710 (764)
Q Consensus 631 ~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~ 710 (764)
+.+|++++||||||+.|+||+|+.++|.+||+.++++.++..++++..+|..|+||||+||.++|++|++.|+++.
T Consensus 281 ~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~---- 356 (389)
T PRK03992 281 DILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDD---- 356 (389)
T ss_pred hhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC----
Confidence 9999999999999999999999999999999999999999989999999999999999999999999999998864
Q ss_pred HHHHhhhcCCCccccccccccccccccHHHHHHHHHhcCCCC
Q 004267 711 IERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRSI 752 (764)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~s~ 752 (764)
...|+.+||.+|++.++++.
T Consensus 357 ----------------------~~~i~~~d~~~A~~~~~~~~ 376 (389)
T PRK03992 357 ----------------------RTEVTMEDFLKAIEKVMGKE 376 (389)
T ss_pred ----------------------CCCcCHHHHHHHHHHHhccc
Confidence 23699999999999999987
No 28
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=1.6e-42 Score=379.85 Aligned_cols=252 Identities=40% Similarity=0.712 Sum_probs=234.7
Q ss_pred eccCccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccchh
Q 004267 474 EVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 553 (764)
Q Consensus 474 ~~~~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~~ 553 (764)
+.|.++|+||+|++..++.+.+.+.+|+.+++.+..+|+.+++|+|||||||||||++|+++|++++.+|+.+.++++.+
T Consensus 176 ~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~ 255 (438)
T PTZ00361 176 KAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQ 255 (438)
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhh
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcchHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCCCC
Q 004267 554 MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDII 633 (764)
Q Consensus 554 ~~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~l 633 (764)
+|+|++++.++.+|+.|+...||||||||||.++..|....++......+.+.+||++||++....++.||+|||+++.|
T Consensus 256 k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~L 335 (438)
T PTZ00361 256 KYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESL 335 (438)
T ss_pred hhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHh
Confidence 99999999999999999999999999999999998876543333445567888999999999878899999999999999
Q ss_pred CccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 004267 634 DPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIER 713 (764)
Q Consensus 634 d~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~ 713 (764)
|++++||||||+.|+||+||.++|.+||+.+++++.+..++++..++..++||||+||+++|++|++.|+++.
T Consensus 336 DpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~------- 408 (438)
T PTZ00361 336 DPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRER------- 408 (438)
T ss_pred hHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred HhhhcCCCccccccccccccccccHHHHHHHHHhcCCC
Q 004267 714 ERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRS 751 (764)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~s 751 (764)
...|+.+||++|+.++...
T Consensus 409 -------------------r~~Vt~~D~~~A~~~v~~~ 427 (438)
T PTZ00361 409 -------------------RMKVTQADFRKAKEKVLYR 427 (438)
T ss_pred -------------------CCccCHHHHHHHHHHHHhh
Confidence 2369999999999998554
No 29
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.3e-43 Score=369.19 Aligned_cols=274 Identities=38% Similarity=0.639 Sum_probs=232.2
Q ss_pred eeccCccccc--cccchhh-hhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCC-eeEEEec
Q 004267 473 VEVPNVSWED--IGGLENV-KRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA-NFISVKG 548 (764)
Q Consensus 473 ~~~~~v~~~~--i~g~~~~-k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~-~~i~v~~ 548 (764)
+-.|+..|++ |||++.- -+..++.+....--|+...++|++.-+|+|||||||||||++|+.+.+.+++ .--.|+|
T Consensus 211 ii~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNG 290 (744)
T KOG0741|consen 211 IINPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNG 290 (744)
T ss_pred ccCCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCc
Confidence 4456777776 6688743 2334455555556688999999999999999999999999999999999865 3445899
Q ss_pred ccchhcccCcchHHHHHHHHHHhh--------CCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCc
Q 004267 549 PELLTMWFGESEANVREIFDKARQ--------SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKT 620 (764)
Q Consensus 549 ~~l~~~~~g~se~~i~~~f~~a~~--------~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~ 620 (764)
|++++||||+||.+||.+|..|.. +.--||+|||||+++.+||+..+ ..++++.++||||+-|||++...+
T Consensus 291 PeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g-~TGVhD~VVNQLLsKmDGVeqLNN 369 (744)
T KOG0741|consen 291 PEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAG-STGVHDTVVNQLLSKMDGVEQLNN 369 (744)
T ss_pred HHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCC-CCCccHHHHHHHHHhcccHHhhhc
Confidence 999999999999999999999864 23469999999999999998754 478999999999999999999999
Q ss_pred EEEEecCCCCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccC----CCCCcccHHHHHHHCCCCCHHHHHHHHH
Q 004267 621 VFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKS----PVSKDVDLRALAKYTQGFSGADITEICQ 696 (764)
Q Consensus 621 v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~----~~~~~~~l~~la~~~~g~sg~di~~~~~ 696 (764)
++||+.|||+|.||+||||||||..++++.+||+..|.+|++.|.+++ .+..|+|+.+||..|..||||+|+.+++
T Consensus 370 ILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVk 449 (744)
T KOG0741|consen 370 ILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVK 449 (744)
T ss_pred EEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHH
Confidence 999999999999999999999999999999999999999999999776 5789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHHhhhcCCCccccccccccccccccHHHHHHHHHhcCCCCCCcccc
Q 004267 697 RACKYAIRENIEKDIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRSICSDAAA 758 (764)
Q Consensus 697 ~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~s~~~~~~~ 758 (764)
.|...|+.|.+....+ ..+ +..+.+...|+++||..|+..++|+.+..++.
T Consensus 450 sA~S~A~nR~vk~~~~---------~~~--~~~~~e~lkV~r~DFl~aL~dVkPAFG~see~ 500 (744)
T KOG0741|consen 450 SAQSFAMNRHVKAGGK---------VEV--DPVAIENLKVTRGDFLNALEDVKPAFGISEED 500 (744)
T ss_pred HHHHHHHHhhhccCcc---------eec--CchhhhheeecHHHHHHHHHhcCcccCCCHHH
Confidence 9999999998765411 011 11123455799999999999999997644433
No 30
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-41 Score=325.01 Aligned_cols=246 Identities=42% Similarity=0.774 Sum_probs=226.3
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhhh
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~ 280 (764)
++++-+|+-+||+++++++|+|.+++|.+||++|+++|+..|+|+|||||||||||.||+++|....+.|+.++|+++..
T Consensus 140 KvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvq 219 (404)
T KOG0728|consen 140 KVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ 219 (404)
T ss_pred hCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHH
Confidence 56778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHH---HHHHHHHHHHHhhcccCCCeEEEEEecCCCCCC
Q 004267 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEV---ERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 357 (764)
Q Consensus 281 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~---~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~l 357 (764)
+|.|+....++.+|--|+.+.|+|||+||||++...+...++.- -+|..-.|++.+|++....++-||.+||+.+-+
T Consensus 220 k~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridil 299 (404)
T KOG0728|consen 220 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL 299 (404)
T ss_pred HHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccc
Confidence 99999999999999999999999999999999998775443222 234455678888999999999999999999999
Q ss_pred ChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCCCchhhhHHhhhcCCCchHHHHHHHHHHHHHHHHhhccccccc
Q 004267 358 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE 437 (764)
Q Consensus 358 d~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 437 (764)
||+|.|+||+|+.|+||.|+++.|.+||++|.++|.+....++..+|....|-+|+++..+|.+|.+.+++++
T Consensus 300 d~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrer------- 372 (404)
T KOG0728|consen 300 DPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRER------- 372 (404)
T ss_pred cHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHh-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred cchhhHHHhhhhcccchhhhcccccc
Q 004267 438 DETIDAEILNSMAVSNEHFQTALGTS 463 (764)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~al~~~ 463 (764)
.+.++.+||+-|...+
T Consensus 373 ----------rvhvtqedfemav~kv 388 (404)
T KOG0728|consen 373 ----------RVHVTQEDFEMAVAKV 388 (404)
T ss_pred ----------hccccHHHHHHHHHHH
Confidence 3567888887765543
No 31
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.8e-41 Score=342.41 Aligned_cols=264 Identities=41% Similarity=0.674 Sum_probs=235.3
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhhh
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~ 280 (764)
.-+.+.|+||.|+.++++-|+|++.+|+..|++|+.+ ..|-++||++||||||||+||+++|.+++..|+.|+.+.+.+
T Consensus 205 ~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~Gi-rrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltS 283 (491)
T KOG0738|consen 205 RNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGI-RRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTS 283 (491)
T ss_pred cCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhc-ccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhh
Confidence 3467999999999999999999999999999999974 478899999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCc-hHHHHHHHHHHHHHhhcccCC----CeEEEEEecCCCC
Q 004267 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTH-GEVERRIVSQLLTLMDGLKSR----AHVIVIGATNRPN 355 (764)
Q Consensus 281 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~-~~~~~~v~~~Ll~~ld~~~~~----~~v~vI~atn~~~ 355 (764)
+|.|++++.+|.+|+-|+...|++|||||||+|+.+|+... .+..+|+.+.|+-+||++... ..|+|+++||-|+
T Consensus 284 KwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~PW 363 (491)
T KOG0738|consen 284 KWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFPW 363 (491)
T ss_pred hhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccCCCc
Confidence 99999999999999999999999999999999999998654 356789999999999998653 2489999999999
Q ss_pred CCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCCCchhhhHHhhhcCCCchHHHHHHHHHHHHHHHHhhccccc
Q 004267 356 SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVID 435 (764)
Q Consensus 356 ~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~ 435 (764)
+||++|+| ||.+.|.+|.|+.+.|..+++..++...+.++++++.++++++||+|+||..+|++|++..+|+....+.
T Consensus 364 diDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i~g~~ 441 (491)
T KOG0738|consen 364 DIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRKIAGLT 441 (491)
T ss_pred chHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999 9999999999999999999999999999999999999999999999999999999999999998765432
Q ss_pred cccc-hhhHHHhhhhcccchhhhccccccCCCCc
Q 004267 436 LEDE-TIDAEILNSMAVSNEHFQTALGTSNPSAL 468 (764)
Q Consensus 436 ~~~~-~~~~~~~~~~~~~~~~~~~al~~~~ps~~ 468 (764)
-... ....+.. ...++..||+.|+..++|+..
T Consensus 442 ~~ei~~lakE~~-~~pv~~~Dfe~Al~~v~pSvs 474 (491)
T KOG0738|consen 442 PREIRQLAKEEP-KMPVTNEDFEEALRKVRPSVS 474 (491)
T ss_pred cHHhhhhhhhcc-ccccchhhHHHHHHHcCcCCC
Confidence 2211 1111222 255889999999999998864
No 32
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-40 Score=324.06 Aligned_cols=257 Identities=40% Similarity=0.733 Sum_probs=228.9
Q ss_pred cCCceEeeCCCceEEecCCCCc---cc---ccccCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEE
Q 004267 174 DPGEYCVVAPDTEIFCEGEPIK---RE---DEDRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILL 247 (764)
Q Consensus 174 ~p~~~~~~~~~t~i~~~~~~~~---~~---~~~~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL 247 (764)
.|.+.+-+..++-+.++.-|.. +. ..+.-+.-.|+||||++++++++.|++.+|+.|++.|+++|+.||+|+|+
T Consensus 131 kPgDLVgvnKDsyliletLP~eyDsrVkaMevDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLm 210 (424)
T KOG0652|consen 131 KPGDLVGVNKDSYLILETLPSEYDSRVKAMEVDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLM 210 (424)
T ss_pred CCcceeeecCCceeehhcCChhhhhhcceeeeccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEe
Confidence 3566677777777655543321 11 12234667899999999999999999999999999999999999999999
Q ss_pred ECCCCCCHHHHHHHHHHHhCCeEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHH--
Q 004267 248 YGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVE-- 325 (764)
Q Consensus 248 ~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~-- 325 (764)
|||||||||.+||+.|...++.|..+.|+.++..|.|+..+.++..|+-|+...|+||||||+|++..++-.....-+
T Consensus 211 YGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDRE 290 (424)
T KOG0652|consen 211 YGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDRE 290 (424)
T ss_pred eCCCCCcHHHHHHHHHHhccchHHHhcchHHHhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999988754332222
Q ss_pred -HHHHHHHHHHhhcccCCCeEEEEEecCCCCCCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCCCchhhhHHh
Q 004267 326 -RRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIA 404 (764)
Q Consensus 326 -~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~~~~l~~la 404 (764)
+|..-.|++.+|++.+...|-||++||+.+-+||+|.|.||+++.|++|.|+++.|.+|+++|.++|.+.++++++++|
T Consensus 291 VQRTMLELLNQLDGFss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELa 370 (424)
T KOG0652|consen 291 VQRTMLELLNQLDGFSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELA 370 (424)
T ss_pred HHHHHHHHHHhhcCCCCccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHh
Confidence 3444567788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCchHHHHHHHHHHHHHHHHhh
Q 004267 405 KDTHGYVGADLAALCTEAALQCIREK 430 (764)
Q Consensus 405 ~~t~g~~~~dl~~l~~~a~~~~~~~~ 430 (764)
+.|.+|.|+...++|-+|.+.++|+.
T Consensus 371 RsTddFNGAQcKAVcVEAGMiALRr~ 396 (424)
T KOG0652|consen 371 RSTDDFNGAQCKAVCVEAGMIALRRG 396 (424)
T ss_pred hcccccCchhheeeehhhhHHHHhcc
Confidence 99999999999999999999999875
No 33
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.1e-41 Score=324.35 Aligned_cols=230 Identities=47% Similarity=0.782 Sum_probs=217.3
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhhh
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~ 280 (764)
.-++++|.||||++-++++++|.+++|+.|.++++.+|+.||+|||+|||||||||+|++++|+...+.|+.+.|+++..
T Consensus 148 ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvq 227 (408)
T KOG0727|consen 148 EKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQ 227 (408)
T ss_pred CCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHH---HHHHHHHHHHhhcccCCCeEEEEEecCCCCCC
Q 004267 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVE---RRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 357 (764)
Q Consensus 281 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~---~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~l 357 (764)
+|.|+....++.+|.-|+.+.|+|+||||+|+++.++-..+...+ +|++-.|++.||++....+|-||.+||+.+.+
T Consensus 228 kylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradtl 307 (408)
T KOG0727|consen 228 KYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADTL 307 (408)
T ss_pred HHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCccccc
Confidence 999999999999999999999999999999999988755433332 46667788899999999999999999999999
Q ss_pred ChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCCCchhhhHHhhhcCCCchHHHHHHHHHHHHHHHHhh
Q 004267 358 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREK 430 (764)
Q Consensus 358 d~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~ 430 (764)
||+|.||||+++.|++|.|+..++.-++...+.+|.+.+++|++.+..+.+..+++|+.++|++|.+.++++.
T Consensus 308 dpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~n 380 (408)
T KOG0727|consen 308 DPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVREN 380 (408)
T ss_pred CHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999875
No 34
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-40 Score=351.32 Aligned_cols=229 Identities=44% Similarity=0.737 Sum_probs=219.1
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhhh
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~ 280 (764)
...+++|+|+-|+++.++++.|++++ |+.|+.|.+||=.-|+||||+||||||||+|||++|++.+.+|+...|+++-.
T Consensus 297 ~~~nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdE 375 (752)
T KOG0734|consen 297 QMKNVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDE 375 (752)
T ss_pred hhcccccccccChHHHHHHHHHHHHH-hcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhh
Confidence 34578999999999999999999998 99999999999999999999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCChh
Q 004267 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPA 360 (764)
Q Consensus 281 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld~a 360 (764)
.++|....++|.+|+.|+.+.||||||||||++..+|........+..++||+..||++..+.+|+|||+||.|+.+|++
T Consensus 376 m~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~A 455 (752)
T KOG0734|consen 376 MFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDKA 455 (752)
T ss_pred hhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhHH
Confidence 99999999999999999999999999999999999998766667788899999999999999999999999999999999
Q ss_pred hhccCCcceEEEecCCChHHHHHHHHHHhcCCCCCCchhhhHHhhhcCCCchHHHHHHHHHHHHHHHHhh
Q 004267 361 LRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREK 430 (764)
Q Consensus 361 l~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~ 430 (764)
|.||||||++|.+|.||..+|.+||+.|+.+.++.+++|+.-+|+-|.||+|+||+++++.|+.++....
T Consensus 456 L~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dg 525 (752)
T KOG0734|consen 456 LTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDG 525 (752)
T ss_pred hcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999998876543
No 35
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-41 Score=338.58 Aligned_cols=249 Identities=41% Similarity=0.711 Sum_probs=231.9
Q ss_pred cCccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccchhcc
Q 004267 476 PNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW 555 (764)
Q Consensus 476 ~~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~~~~ 555 (764)
.+++|+.++|+-.+...+++.+..|+.++++|.++|+++|+|++||||||+|||.+|+++|...+.+|+.+..+++.++|
T Consensus 127 ~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~ky 206 (388)
T KOG0651|consen 127 RNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKY 206 (388)
T ss_pred cccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhh
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcchHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCCCCCc
Q 004267 556 FGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDP 635 (764)
Q Consensus 556 ~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~ 635 (764)
.|++.+.||+.|..|+...|||||+||||++.++|.+.....+....+.+-.||++|||+....+|-+|+|||+|+.|||
T Consensus 207 iGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLdp 286 (388)
T KOG0651|consen 207 IGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLDP 286 (388)
T ss_pred cccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccccch
Confidence 99999999999999999999999999999999998655444555667788899999999999999999999999999999
Q ss_pred cCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 004267 636 ALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERER 715 (764)
Q Consensus 636 allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~ 715 (764)
||+||||+|+.++.|+|+...|..|++.+.+.......+|.+++.+..+||+|+|++++|++|.+.|+++.-
T Consensus 287 aLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~~-------- 358 (388)
T KOG0651|consen 287 ALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEER-------- 358 (388)
T ss_pred hhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccchhh--------
Confidence 999999999999999999999999999999998888899999999999999999999999999999988752
Q ss_pred hhcCCCccccccccccccccccHHHHHHHHHhcCC
Q 004267 716 RRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARR 750 (764)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~ 750 (764)
..+-+|||.+++.+..-
T Consensus 359 ------------------~~vl~Ed~~k~vrk~~~ 375 (388)
T KOG0651|consen 359 ------------------DEVLHEDFMKLVRKQAD 375 (388)
T ss_pred ------------------HHHhHHHHHHHHHHHHH
Confidence 24778888888877654
No 36
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-41 Score=331.36 Aligned_cols=246 Identities=46% Similarity=0.776 Sum_probs=226.3
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhhh
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~ 280 (764)
+-+.-+|.||||++.++++|+|.+++|+.||++|+..|+.||+||+|||+||||||.||+++|+...+.|+.+-|++++.
T Consensus 178 KaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQ 257 (440)
T KOG0726|consen 178 KAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQ 257 (440)
T ss_pred cCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHH
Confidence 34667999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHH---HHHHHHhhcccCCCeEEEEEecCCCCCC
Q 004267 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIV---SQLLTLMDGLKSRAHVIVIGATNRPNSI 357 (764)
Q Consensus 281 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~---~~Ll~~ld~~~~~~~v~vI~atn~~~~l 357 (764)
+|.|+....+|++|+-|..+.|+|+||||||++..+|....+.-++.+. -.|++.+|++.+++.|-||.+||+.+.+
T Consensus 258 kylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~L 337 (440)
T KOG0726|consen 258 KYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 337 (440)
T ss_pred HHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEeccccccc
Confidence 9999999999999999999999999999999999998765554444443 3567778899999999999999999999
Q ss_pred ChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCCCchhhhHHhhhcCCCchHHHHHHHHHHHHHHHHhhccccccc
Q 004267 358 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE 437 (764)
Q Consensus 358 d~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 437 (764)
||+|.||||+|+.|+++.||+..+..|+.+|+.+|.+..+++++.+...-..++|+|+.++|.+|.+-++|..
T Consensus 338 DPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRer------- 410 (440)
T KOG0726|consen 338 DPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRER------- 410 (440)
T ss_pred CHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHH-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998875
Q ss_pred cchhhHHHhhhhcccchhhhcccccc
Q 004267 438 DETIDAEILNSMAVSNEHFQTALGTS 463 (764)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~al~~~ 463 (764)
...++++||.++.+.+
T Consensus 411 ----------Rm~vt~~DF~ka~e~V 426 (440)
T KOG0726|consen 411 ----------RMKVTMEDFKKAKEKV 426 (440)
T ss_pred ----------HhhccHHHHHHHHHHH
Confidence 3457788888775543
No 37
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.8e-40 Score=355.03 Aligned_cols=228 Identities=43% Similarity=0.728 Sum_probs=221.8
Q ss_pred CCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhhhhcc
Q 004267 204 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLA 283 (764)
Q Consensus 204 ~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~~ 283 (764)
.+.|+||||+.++++.+.+.+++|-+||.+|.+..+.-+.|||||||||||||.||.++|...+..|+.+.|+++.++|.
T Consensus 663 gi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyI 742 (952)
T KOG0735|consen 663 GIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYI 742 (952)
T ss_pred CCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHh
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCChhhhc
Q 004267 284 GESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRR 363 (764)
Q Consensus 284 g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld~al~r 363 (764)
|.+++++|.+|..|+...|||||+||+|+++|+|+.++..+..|+++||++.||+...-.+|.|+|+|.+|+.|||||.|
T Consensus 743 GaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLR 822 (952)
T KOG0735|consen 743 GASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLR 822 (952)
T ss_pred cccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcC
Confidence 99999999999999999999999999999999999999999999999999999999998999999999999999999999
Q ss_pred cCCcceEEEecCCChHHHHHHHHHHhcCCCCCCchhhhHHhhhcCCCchHHHHHHHHHHHHHHHHhhc
Q 004267 364 FGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKM 431 (764)
Q Consensus 364 ~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~ 431 (764)
|||+|+.+..+.|++.+|++|++.+........++|++.+|..|.||+|+|+..++..|-+.++.+..
T Consensus 823 pGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~~l 890 (952)
T KOG0735|consen 823 PGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHEIL 890 (952)
T ss_pred CCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999888876653
No 38
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.9e-40 Score=377.03 Aligned_cols=386 Identities=38% Similarity=0.601 Sum_probs=304.5
Q ss_pred CCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhC-----CeEEEEechh
Q 004267 203 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG-----AFFFCINGPE 277 (764)
Q Consensus 203 ~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~-----~~~i~v~~~~ 277 (764)
..++|+++||++..+++++|++.+|+.||++|.++++.||+|||++||||||||+.|+++|..+. ..|+.-.|.+
T Consensus 260 ~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD 339 (1080)
T KOG0732|consen 260 SSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGAD 339 (1080)
T ss_pred cccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCch
Confidence 46799999999999999999999999999999999999999999999999999999999999874 3467778999
Q ss_pred hhhhccchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCC
Q 004267 278 IMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 357 (764)
Q Consensus 278 l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~l 357 (764)
..++|+|+.+..++.+|++|+..+|+|+|+||||-++|.+......+...++..|+.+|+++..++.|+||||||+|+.+
T Consensus 340 ~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnRpda~ 419 (1080)
T KOG0732|consen 340 CLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNRPDAI 419 (1080)
T ss_pred hhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCCcccc
Confidence 99999999999999999999999999999999999999998888888889999999999999999999999999999999
Q ss_pred ChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCC-CchhhhHHhhhcCCCchHHHHHHHHHHHHHHHHhhcccccc
Q 004267 358 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDL 436 (764)
Q Consensus 358 d~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~ 436 (764)
||+|||||||++++.++.|+.+.|.+|+.+|+++..-. ...-+..+|..+.||.|+|+.+||.+|++.++++..+.+..
T Consensus 420 dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~Pq~y~ 499 (1080)
T KOG0732|consen 420 DPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSFPQIYS 499 (1080)
T ss_pred chhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhccccCeeec
Confidence 99999999999999999999999999999999887632 23457889999999999999999999999999988766544
Q ss_pred ccchhhHHHhhhhcccchhhhccccccCCCCcceeee-eccCccccc-cccchhhhhccccee-------------eccC
Q 004267 437 EDETIDAEILNSMAVSNEHFQTALGTSNPSALRETVV-EVPNVSWED-IGGLENVKRELQETV-------------QYPV 501 (764)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~al~~~~ps~~~~~~~-~~~~v~~~~-i~g~~~~k~~l~~~v-------------~~~~ 501 (764)
....... ....+.+...+|..|+....|+.-+.... ..|--..-- +.+.......++..+ .+..
T Consensus 500 s~~kl~~-d~~~ikV~~~~f~~A~~~i~ps~~R~~~~~s~Pl~~~~~~ll~~~~~~~~iq~~~~va~~~~k~~e~~~~~v 578 (1080)
T KOG0732|consen 500 SSDKLLI-DVALIKVEVRDFVEAMSRITPSSRRSSVIFSRPLSTYLKPLLPFQDALEDIQGLMDVASSMAKIEEHLKLLV 578 (1080)
T ss_pred ccccccc-cchhhhhhhHhhhhhhhccCCCCCccccCCCCCCCcceecccchHHHHHHhhcchhHHhhhhhHHHHhHHHH
Confidence 4332221 12344588899999999888877664322 111100000 110111111111111 1100
Q ss_pred CChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHh-CCeeEEEecccchhcc-cCcchHHHHHHHHHHhhCCCeEEE
Q 004267 502 EHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC-QANFISVKGPELLTMW-FGESEANVREIFDKARQSAPCVLF 579 (764)
Q Consensus 502 ~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~-~~~~i~v~~~~l~~~~-~g~se~~i~~~f~~a~~~~p~iif 579 (764)
...+..-...+-....+++.|..|.|-+.+.+++-+.+ +.+......+.+++.- .+..+..|..+|..|+...|||+|
T Consensus 579 ~~~e~~~~i~lic~~~lli~~~~~~g~~~lg~aIlh~~~~~~v~s~~issll~d~~~~~~~~~iv~i~~eaR~~~psi~~ 658 (1080)
T KOG0732|consen 579 RSFESNFAIRLICRPRLLINGGKGSGQDYLGPAILHRLEGLPVQSLDISSLLSDEGTEDLEEEIVHIFMEARKTTPSIVF 658 (1080)
T ss_pred HhhhcccchhhhcCcHHhcCCCcccccCcccHHHHHHHhccchHHHHHHHHHhccccccHHHHHHHHHHHHhccCCceee
Confidence 00000001111122348899999999999999998865 5555555555555443 556788999999999999999999
Q ss_pred Eecccchhhc
Q 004267 580 FDELDSIATQ 589 (764)
Q Consensus 580 iDEid~l~~~ 589 (764)
|-.+|..+..
T Consensus 659 ip~~d~w~~~ 668 (1080)
T KOG0732|consen 659 IPNVDEWARV 668 (1080)
T ss_pred ccchhhhhhc
Confidence 9999987754
No 39
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=7.1e-39 Score=311.70 Aligned_cols=303 Identities=34% Similarity=0.582 Sum_probs=256.0
Q ss_pred hhhHHHHHHHhhhhcCccccCCcEEEEecCceeEEEEEEEecCCceEeeCCCceEEecCCCCcccccccCCCCCcccccC
Q 004267 133 GNLFDAFLRPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGEPIKREDEDRLDEVGYDDVGG 212 (764)
Q Consensus 133 ~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~f~v~~~~p~~~~~~~~~t~i~~~~~~~~~~~~~~~~~~~~~~i~G 212 (764)
.++|+.|-+.-|. +..++.|+.+.-.+......|+|+++.|.+.+++++.|.+... .+-. ......++++++|+.|
T Consensus 50 ~~~F~~YArdQW~--Ge~v~eg~ylFD~~~~pdyAfkvI~~~P~~~~i~~st~i~vl~-~~~~-~~~e~~~~it~ddViG 125 (368)
T COG1223 50 PEVFNIYARDQWL--GEVVREGDYLFDTRMFPDYAFKVIRVVPSGGGIITSTTIFVLE-TPRE-EDREIISDITLDDVIG 125 (368)
T ss_pred HHHHHHHHHHhhc--ceeeecCceEeecccccccceeEEEEeCCCCceecceEEEEec-Ccch-hhhhhhccccHhhhhc
Confidence 3578888888875 4568999987655555677899999999998887776665443 2211 1123568899999999
Q ss_pred hHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhhhhccchhHHHHHH
Q 004267 213 VRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRK 292 (764)
Q Consensus 213 l~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~~g~~~~~l~~ 292 (764)
.++.+.+++-++++ |.+|+.|..| .|++||+|||||||||++|+++|++...+++.++..++++.++|+...+++.
T Consensus 126 qEeAK~kcrli~~y-LenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdgar~Ihe 201 (368)
T COG1223 126 QEEAKRKCRLIMEY-LENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGARRIHE 201 (368)
T ss_pred hHHHHHHHHHHHHH-hhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhhHHHHHHH
Confidence 99999999888776 8899988776 5899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCeEEEEccccccCCCCCCC--chHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCChhhhccCCcceE
Q 004267 293 AFEEAEKNAPSIIFIDEIDSIAPKREKT--HGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDRE 370 (764)
Q Consensus 293 vf~~a~~~~p~il~iDEid~l~~~~~~~--~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~rf~~~ 370 (764)
+++.|....|||+||||+|+++-.|... .+++ ..+++.|++.||++..+.+|+.|++||+|+.+|+++|+ ||..+
T Consensus 202 ly~rA~~~aPcivFiDE~DAiaLdRryQelRGDV-sEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRs--RFEeE 278 (368)
T COG1223 202 LYERARKAAPCIVFIDELDAIALDRRYQELRGDV-SEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIRS--RFEEE 278 (368)
T ss_pred HHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccH-HHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHHh--hhhhe
Confidence 9999999999999999999998776532 2233 46789999999999999999999999999999999998 99999
Q ss_pred EEecCCChHHHHHHHHHHhcCCCCCCchhhhHHhhhcCCCchHHHHHH-HHHHHHHHHHhhccccccccchhhHHHhhhh
Q 004267 371 IDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAAL-CTEAALQCIREKMDVIDLEDETIDAEILNSM 449 (764)
Q Consensus 371 i~i~~p~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (764)
|++..|+.++|.+|++.+.+.+++.-+.+++.++..|.||+|+|+..- ++.|..+++.... -
T Consensus 279 IEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed~-----------------e 341 (368)
T COG1223 279 IEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAEDR-----------------E 341 (368)
T ss_pred eeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhch-----------------h
Confidence 999999999999999999999999999999999999999999999654 4555556665432 2
Q ss_pred cccchhhhcccccc
Q 004267 450 AVSNEHFQTALGTS 463 (764)
Q Consensus 450 ~~~~~~~~~al~~~ 463 (764)
.++.+|++.++.+.
T Consensus 342 ~v~~edie~al~k~ 355 (368)
T COG1223 342 KVEREDIEKALKKE 355 (368)
T ss_pred hhhHHHHHHHHHhh
Confidence 35667777777653
No 40
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=8.3e-40 Score=371.73 Aligned_cols=251 Identities=43% Similarity=0.798 Sum_probs=230.1
Q ss_pred eccCccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccchh
Q 004267 474 EVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 553 (764)
Q Consensus 474 ~~~~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~~ 553 (764)
+.|.++|+|++|++++|+.+.+.+.+ +.+++.+...|..+++|+|||||||||||++|+++|++++.+|+.++++++.+
T Consensus 48 ~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~ 126 (495)
T TIGR01241 48 EKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVE 126 (495)
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHH
Confidence 45789999999999999999988776 78889999999999999999999999999999999999999999999999999
Q ss_pred cccCcchHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCCCC
Q 004267 554 MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDII 633 (764)
Q Consensus 554 ~~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~l 633 (764)
.|+|.+++.++.+|+.|+...||||||||||.+...|+...+.......+++++||++||++....+++||+|||+|+.|
T Consensus 127 ~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~l 206 (495)
T TIGR01241 127 MFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVL 206 (495)
T ss_pred HHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhc
Confidence 99999999999999999999999999999999998886543333345678999999999999888899999999999999
Q ss_pred CccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 004267 634 DPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIER 713 (764)
Q Consensus 634 d~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~ 713 (764)
||+++||||||+.|+|++|+.++|.+||+.++++.++..++++..+|..|.||||+||.++|++|+..|.++.
T Consensus 207 d~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~------- 279 (495)
T TIGR01241 207 DPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKN------- 279 (495)
T ss_pred CHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC-------
Confidence 9999999999999999999999999999999999888888999999999999999999999999998887653
Q ss_pred HhhhcCCCccccccccccccccccHHHHHHHHHhcCCC
Q 004267 714 ERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRS 751 (764)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~s 751 (764)
...|+.+||++|++.+...
T Consensus 280 -------------------~~~i~~~~l~~a~~~~~~~ 298 (495)
T TIGR01241 280 -------------------KTEITMNDIEEAIDRVIAG 298 (495)
T ss_pred -------------------CCCCCHHHHHHHHHHHhcc
Confidence 2369999999999987643
No 41
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-40 Score=353.38 Aligned_cols=273 Identities=37% Similarity=0.647 Sum_probs=241.2
Q ss_pred eeeccCccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccc
Q 004267 472 VVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 551 (764)
Q Consensus 472 ~~~~~~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l 551 (764)
....+.+.|+|++|++.+|+.+.+.+.||...++.|..+. .+.+|+||.||||+|||+|++|+|.++++.|+.++++.|
T Consensus 144 ~~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassL 222 (428)
T KOG0740|consen 144 GDTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSL 222 (428)
T ss_pred hccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHh
Confidence 3445679999999999999999999999999999998743 567899999999999999999999999999999999999
Q ss_pred hhcccCcchHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCC--CCCcEEEEecCCC
Q 004267 552 LTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS--AKKTVFIIGATNR 629 (764)
Q Consensus 552 ~~~~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~--~~~~v~vi~aTn~ 629 (764)
.++|+|++|+.|+.+|+-|+...|+|+|+||||+++..|... .....+|+..++|.++++.. ..++|+||||||+
T Consensus 223 tsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~---e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~ 299 (428)
T KOG0740|consen 223 TSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDN---EHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNR 299 (428)
T ss_pred hhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCc---ccccchhhhhHHHhhhccccCCCCCeEEEEecCCC
Confidence 999999999999999999999999999999999999999433 35678899999999999975 4569999999999
Q ss_pred CCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCC-CCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 004267 630 PDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSP-VSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIE 708 (764)
Q Consensus 630 ~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~-~~~~~~l~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~ 708 (764)
|+.+|.|++| ||.+.+|+|+||.++|..+|+.++.+.+ ...+.|++.+++.|+||||+||.++|.+|++..++....
T Consensus 300 P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~ 377 (428)
T KOG0740|consen 300 PWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELGG 377 (428)
T ss_pred chHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhccc
Confidence 9999999999 9999999999999999999999997773 345678999999999999999999999999998887643
Q ss_pred H-hHHHHhhhcCCCccccccccccccccccHHHHHHHHHhcCCCCCCcccccccccC
Q 004267 709 K-DIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRSICSDAAAVPRYWI 764 (764)
Q Consensus 709 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~s~~~~~~~~~~~~~ 764 (764)
. ... -...+..+.++..||+.|++.++|++|...-..+..|.
T Consensus 378 ~~~~~--------------~~~~~~~r~i~~~df~~a~~~i~~~~s~~~l~~~~~~~ 420 (428)
T KOG0740|consen 378 TTDLE--------------FIDADKIRPITYPDFKNAFKNIKPSVSLEGLEKYEKWD 420 (428)
T ss_pred chhhh--------------hcchhccCCCCcchHHHHHHhhccccCccccchhHHHh
Confidence 2 111 11234567899999999999999999766666777773
No 42
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-39 Score=317.80 Aligned_cols=230 Identities=43% Similarity=0.779 Sum_probs=214.6
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhhh
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~ 280 (764)
.-++++|.|+||+.+++++++|.+++|+.||+.|-+||+.||+|||+|||||||||.+||++|+..++.|+.+-|++++.
T Consensus 170 ekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselvq 249 (435)
T KOG0729|consen 170 EKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQ 249 (435)
T ss_pred cCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCc---hHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCC
Q 004267 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTH---GEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 357 (764)
Q Consensus 281 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~---~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~l 357 (764)
+|+|+....++.+|+-|+....||+|+||||++...+-... ++--+|..-.|++.+|++..++++-|+.+||+|+.+
T Consensus 250 kyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatnrpdtl 329 (435)
T KOG0729|consen 250 KYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 329 (435)
T ss_pred HHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCCCCc
Confidence 99999999999999999999999999999999987764322 222244455677888999999999999999999999
Q ss_pred ChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCCCchhhhHHhhhcCCCchHHHHHHHHHHHHHHHHhh
Q 004267 358 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREK 430 (764)
Q Consensus 358 d~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~ 430 (764)
||+|.||||+++.+++..|+.+.|..|+++|.+.|.+..+..++.+|+.+.+-+|+++..+|.+|.+.+++.+
T Consensus 330 dpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfairar 402 (435)
T KOG0729|consen 330 DPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRAR 402 (435)
T ss_pred CHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998765
No 43
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=3.1e-39 Score=358.03 Aligned_cols=252 Identities=43% Similarity=0.760 Sum_probs=215.5
Q ss_pred eeccCccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCC----------e
Q 004267 473 VEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA----------N 542 (764)
Q Consensus 473 ~~~~~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~----------~ 542 (764)
.+.|+++|++|||++..++.+++.+.+|+.+++.|..+|+.+++|+|||||||||||++|+++|++++. .
T Consensus 174 ~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~ 253 (512)
T TIGR03689 174 EEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSY 253 (512)
T ss_pred ecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCcee
Confidence 456889999999999999999999999999999999999999999999999999999999999998754 3
Q ss_pred eEEEecccchhcccCcchHHHHHHHHHHhhC----CCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCC
Q 004267 543 FISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAK 618 (764)
Q Consensus 543 ~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~----~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~ 618 (764)
|+.+++++++++|+|++++.++.+|+.|+.. .||||||||+|+++..|+.+. .+....+++++||++||++...
T Consensus 254 fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~--s~d~e~~il~~LL~~LDgl~~~ 331 (512)
T TIGR03689 254 FLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGV--SSDVETTVVPQLLSELDGVESL 331 (512)
T ss_pred EEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCc--cchHHHHHHHHHHHHhcccccC
Confidence 7788999999999999999999999998864 699999999999998886532 2334578899999999999888
Q ss_pred CcEEEEecCCCCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhcc-CCCCC---------cccHHHHHHH------
Q 004267 619 KTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRK-SPVSK---------DVDLRALAKY------ 682 (764)
Q Consensus 619 ~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~-~~~~~---------~~~l~~la~~------ 682 (764)
.+++||+|||+++.||||++||||||.+|+|++|+.++|.+||+.++.. .++.. ..++..+++.
T Consensus 332 ~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~av~~~~ 411 (512)
T TIGR03689 332 DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQRAVDHLY 411 (512)
T ss_pred CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999999999999999999999864 34421 1122222221
Q ss_pred -----------------------CCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCCCccccccccccccccccHH
Q 004267 683 -----------------------TQGFSGADITEICQRACKYAIRENIEKDIERERRRRDNPEAMDEDAAEDEVSEIKAA 739 (764)
Q Consensus 683 -----------------------~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 739 (764)
++.+|||+|+++|.+|...|+.+.+.. ....|+++
T Consensus 412 a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~----------------------~~~~~~~~ 469 (512)
T TIGR03689 412 ATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITG----------------------GQVGLRIE 469 (512)
T ss_pred hhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhc----------------------CCcCcCHH
Confidence 456889999999999999998887632 12479999
Q ss_pred HHHHHHHhc
Q 004267 740 HFEESMKFA 748 (764)
Q Consensus 740 ~f~~a~~~~ 748 (764)
|+..|+..-
T Consensus 470 ~l~~a~~~e 478 (512)
T TIGR03689 470 HLLAAVLDE 478 (512)
T ss_pred HHHHHHHHh
Confidence 999998753
No 44
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=3.8e-39 Score=353.01 Aligned_cols=250 Identities=50% Similarity=0.836 Sum_probs=231.4
Q ss_pred eeccCccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccch
Q 004267 473 VEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 552 (764)
Q Consensus 473 ~~~~~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~ 552 (764)
.+.|.+.|++++|++..++.+.+.+.+|+.+++.|..+|+.+++|+|||||||||||++|+++|++++.+|+.+.++++.
T Consensus 114 ~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~ 193 (364)
T TIGR01242 114 EERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELV 193 (364)
T ss_pred ccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCcchHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCCC
Q 004267 553 TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDI 632 (764)
Q Consensus 553 ~~~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ 632 (764)
.+|+|+....++.+|+.++...|+||||||+|.+...|.....+......+.+.++|.+++++....++.||+|||+++.
T Consensus 194 ~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ 273 (364)
T TIGR01242 194 RKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDI 273 (364)
T ss_pred HHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhh
Confidence 99999999999999999999999999999999998877654333344556788999999999877789999999999999
Q ss_pred CCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHhHH
Q 004267 633 IDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIE 712 (764)
Q Consensus 633 ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~ 712 (764)
+|++++||||||+.|+||+|+.++|.+||+.++++..+..++++..+++.++||||+||.++|++|++.|+++.
T Consensus 274 ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~------ 347 (364)
T TIGR01242 274 LDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREE------ 347 (364)
T ss_pred CChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC------
Confidence 99999999999999999999999999999999999998888999999999999999999999999999998864
Q ss_pred HHhhhcCCCccccccccccccccccHHHHHHHHHhc
Q 004267 713 RERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFA 748 (764)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~ 748 (764)
...|+.+||++|++++
T Consensus 348 --------------------~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 348 --------------------RDYVTMDDFIKAVEKV 363 (364)
T ss_pred --------------------CCccCHHHHHHHHHHh
Confidence 2369999999999875
No 45
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=2e-38 Score=363.38 Aligned_cols=246 Identities=42% Similarity=0.771 Sum_probs=227.0
Q ss_pred cCccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccchhcc
Q 004267 476 PNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW 555 (764)
Q Consensus 476 ~~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~~~~ 555 (764)
+.++|+|++|++++++.+.+.+.+ ++.++.+..+|..+++|+||+||||||||++|+++|++++.+|+.++++++...|
T Consensus 178 ~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~ 256 (638)
T CHL00176 178 TGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMF 256 (638)
T ss_pred CCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHh
Confidence 468899999999999999988765 6788889999999999999999999999999999999999999999999999999
Q ss_pred cCcchHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCCCCCc
Q 004267 556 FGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDP 635 (764)
Q Consensus 556 ~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~ 635 (764)
+|.....++.+|+.|+...||||||||||.+...|+.+.+.......+++++||.+||++....+++||+|||+++.+|+
T Consensus 257 ~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ 336 (638)
T CHL00176 257 VGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDA 336 (638)
T ss_pred hhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhh
Confidence 99999999999999999999999999999999888765444445567899999999999988889999999999999999
Q ss_pred cCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 004267 636 ALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERER 715 (764)
Q Consensus 636 allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~ 715 (764)
|++||||||+.|+|++|+.++|.+||+.++++.++..++++..+|+.|.||||+||.++|++|+..|.++.
T Consensus 337 ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~--------- 407 (638)
T CHL00176 337 ALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRK--------- 407 (638)
T ss_pred hhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhC---------
Confidence 99999999999999999999999999999999888889999999999999999999999999999887654
Q ss_pred hhcCCCccccccccccccccccHHHHHHHHHhc
Q 004267 716 RRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFA 748 (764)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~ 748 (764)
...|+++||++|+..+
T Consensus 408 -----------------~~~It~~dl~~Ai~rv 423 (638)
T CHL00176 408 -----------------KATITMKEIDTAIDRV 423 (638)
T ss_pred -----------------CCCcCHHHHHHHHHHH
Confidence 2368999999999887
No 46
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=6.8e-37 Score=334.01 Aligned_cols=246 Identities=43% Similarity=0.725 Sum_probs=224.2
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhhh
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~ 280 (764)
..++++|+||||++.+++.|++.+++|+.+|++|+.+|+.+++++|||||||||||++++++|++++.+++.+.++++..
T Consensus 138 ~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~ 217 (398)
T PTZ00454 138 EKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQ 217 (398)
T ss_pred CCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCch---HHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCC
Q 004267 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHG---EVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 357 (764)
Q Consensus 281 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~---~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~l 357 (764)
++.|+.+..++.+|..|....|+||||||+|.++.++..... ....+++.+++..++++....++.||++||+++.+
T Consensus 218 k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~L 297 (398)
T PTZ00454 218 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTL 297 (398)
T ss_pred HhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhC
Confidence 999999999999999999999999999999999987643322 22346677888889988877889999999999999
Q ss_pred ChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCCCchhhhHHhhhcCCCchHHHHHHHHHHHHHHHHhhccccccc
Q 004267 358 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE 437 (764)
Q Consensus 358 d~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 437 (764)
|+++.|+|||++.|+++.|+.++|.+|++.++.++.+..++++..++..|+||+|+|+.++|++|++.++++..
T Consensus 298 DpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~------ 371 (398)
T PTZ00454 298 DPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKNR------ 371 (398)
T ss_pred CHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCC------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887642
Q ss_pred cchhhHHHhhhhcccchhhhcccccc
Q 004267 438 DETIDAEILNSMAVSNEHFQTALGTS 463 (764)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~al~~~ 463 (764)
..++.+||..|+..+
T Consensus 372 -----------~~i~~~df~~A~~~v 386 (398)
T PTZ00454 372 -----------YVILPKDFEKGYKTV 386 (398)
T ss_pred -----------CccCHHHHHHHHHHH
Confidence 246777888777654
No 47
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.9e-38 Score=309.16 Aligned_cols=228 Identities=39% Similarity=0.695 Sum_probs=212.3
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhhh
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~ 280 (764)
.-+++.|+|+.||+..++.|+|.+-+|+++|++|.. +-.|-++||||||||||||.||+++|.+.+..|+.|+.+++++
T Consensus 126 EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvS 204 (439)
T KOG0739|consen 126 EKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS 204 (439)
T ss_pred cCCCCchhhhccchhHHHHHHhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHH
Confidence 347899999999999999999999999999999975 4467789999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccC-CCeEEEEEecCCCCCCCh
Q 004267 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKS-RAHVIVIGATNRPNSIDP 359 (764)
Q Consensus 281 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~-~~~v~vI~atn~~~~ld~ 359 (764)
+|.|++++.++.+|+-|+.+.|+||||||||.+|..++.+.++..+|+...|+-.|.+... ..+|+|+|+||-|+.+|.
T Consensus 205 KWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDs 284 (439)
T KOG0739|consen 205 KWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDS 284 (439)
T ss_pred HHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHH
Confidence 9999999999999999999999999999999999999988888899999999999998764 468999999999999999
Q ss_pred hhhccCCcceEEEecCCChHHHHHHHHHHhcCCCC-CCchhhhHHhhhcCCCchHHHHHHHHHHHHHHHHhhc
Q 004267 360 ALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKM 431 (764)
Q Consensus 360 al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l-~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~ 431 (764)
++|| ||++.|++|.|+...|..+++.|+...+. ..+.|+.+|++.|+||+|+|+.-+++.|.++.+|+..
T Consensus 285 AIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRkvq 355 (439)
T KOG0739|consen 285 AIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRKVQ 355 (439)
T ss_pred HHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHHhh
Confidence 9999 99999999999999999999999887764 3567899999999999999999999999998887654
No 48
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-37 Score=359.05 Aligned_cols=264 Identities=38% Similarity=0.692 Sum_probs=231.1
Q ss_pred cCccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhC-----CeeEEEeccc
Q 004267 476 PNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ-----ANFISVKGPE 550 (764)
Q Consensus 476 ~~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~-----~~~i~v~~~~ 550 (764)
..+.|++|||++.++.+|+++|..|+.+|+.|..+++.||+|+||+||||||||+.|+++|..+. ..|+.-+|++
T Consensus 260 ~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD 339 (1080)
T KOG0732|consen 260 SSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGAD 339 (1080)
T ss_pred cccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCch
Confidence 46899999999999999999999999999999999999999999999999999999999999873 4577789999
Q ss_pred chhcccCcchHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCC
Q 004267 551 LLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRP 630 (764)
Q Consensus 551 l~~~~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~ 630 (764)
.+++|+|+.|+.++.+|+.|+...|+||||||||-|++.|... ....+..++++||..|||+...+.|+||+|||||
T Consensus 340 ~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSsk---qEqih~SIvSTLLaLmdGldsRgqVvvigATnRp 416 (1080)
T KOG0732|consen 340 CLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSK---QEQIHASIVSTLLALMDGLDSRGQVVVIGATNRP 416 (1080)
T ss_pred hhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccch---HHHhhhhHHHHHHHhccCCCCCCceEEEcccCCc
Confidence 9999999999999999999999999999999999999998653 2456788999999999999999999999999999
Q ss_pred CCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCC-CCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 004267 631 DIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPV-SKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEK 709 (764)
Q Consensus 631 ~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~-~~~~~l~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~ 709 (764)
+.+|||++||||||+.+|||+|+.+.|.+|+.++.++..- -...-+..+|+.|.||-||||+++|.+|++.++++....
T Consensus 417 da~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~Pq 496 (1080)
T KOG0732|consen 417 DAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSFPQ 496 (1080)
T ss_pred cccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhccccCe
Confidence 9999999999999999999999999999999999987642 223347889999999999999999999999999986432
Q ss_pred hHHHHhhhcCCCccccccccccccccccHHHHHHHHHhcCCCC
Q 004267 710 DIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRSI 752 (764)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~s~ 752 (764)
.-. ..+... .......|+.+||..|+.++-||.
T Consensus 497 ~y~-------s~~kl~---~d~~~ikV~~~~f~~A~~~i~ps~ 529 (1080)
T KOG0732|consen 497 IYS-------SSDKLL---IDVALIKVEVRDFVEAMSRITPSS 529 (1080)
T ss_pred eec-------cccccc---ccchhhhhhhHhhhhhhhccCCCC
Confidence 100 000000 112233499999999999999986
No 49
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=100.00 E-value=6.2e-37 Score=355.68 Aligned_cols=249 Identities=40% Similarity=0.772 Sum_probs=227.8
Q ss_pred CccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccchhccc
Q 004267 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWF 556 (764)
Q Consensus 477 ~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~~~~~ 556 (764)
...|+++.|.+..++.+.+.+.+ ...++.+..++...++|++|+||||||||++|+++|++++.+|+.++++++...|+
T Consensus 148 ~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~ 226 (644)
T PRK10733 148 KTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFV 226 (644)
T ss_pred hCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhh
Confidence 46799999999999999988776 45567777788888999999999999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCCCCCcc
Q 004267 557 GESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPA 636 (764)
Q Consensus 557 g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~a 636 (764)
|.....++.+|+.|+...||||||||||.+...|+.+.+.......+++++||.+||++....+++||+|||+|+.||||
T Consensus 227 g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~A 306 (644)
T PRK10733 227 GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPA 306 (644)
T ss_pred cccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHH
Confidence 99999999999999999999999999999999887654444445678999999999999888899999999999999999
Q ss_pred CCCCCccceEEeecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHhh
Q 004267 637 LLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERR 716 (764)
Q Consensus 637 llrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~ 716 (764)
++||||||+.|+|++||.++|.+||+.++++.++..++|+..+|+.|.||||+||.++|++|+..|.++.
T Consensus 307 l~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~---------- 376 (644)
T PRK10733 307 LLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGN---------- 376 (644)
T ss_pred HhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcC----------
Confidence 9999999999999999999999999999999999999999999999999999999999999999998754
Q ss_pred hcCCCccccccccccccccccHHHHHHHHHhcCCCC
Q 004267 717 RRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRSI 752 (764)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~s~ 752 (764)
...|+++||++|+..+.++.
T Consensus 377 ----------------~~~i~~~d~~~a~~~v~~g~ 396 (644)
T PRK10733 377 ----------------KRVVSMVEFEKAKDKIMMGA 396 (644)
T ss_pred ----------------CCcccHHHHHHHHHHHhccc
Confidence 23699999999999887654
No 50
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-36 Score=342.09 Aligned_cols=229 Identities=46% Similarity=0.796 Sum_probs=214.8
Q ss_pred CCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhhhhc
Q 004267 203 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKL 282 (764)
Q Consensus 203 ~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~ 282 (764)
..++|.|+.|+++.+++|.|++.. |++|+.|..+|+..|+|+||+||||||||.||+++|++.+.+|+.++|++++..+
T Consensus 306 t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~ 384 (774)
T KOG0731|consen 306 TGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMF 384 (774)
T ss_pred CCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHh
Confidence 458999999999999999999998 9999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCC---C-CchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCC
Q 004267 283 AGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKRE---K-THGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSID 358 (764)
Q Consensus 283 ~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~---~-~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld 358 (764)
.|....+++.+|+.|+.+.|||+||||||++...++ . ..+.-.....+||+..||++.....|+|+++||+++.+|
T Consensus 385 ~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld 464 (774)
T KOG0731|consen 385 VGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILD 464 (774)
T ss_pred cccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccC
Confidence 999999999999999999999999999999999884 2 223344567899999999999999999999999999999
Q ss_pred hhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCC-CchhhhHHhhhcCCCchHHHHHHHHHHHHHHHHhhcc
Q 004267 359 PALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMD 432 (764)
Q Consensus 359 ~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~ 432 (764)
++|.||||||+.|.++.|+..+|.+|++.|.+...+. +++++..+|..|+||+|+||.++|.+|+..+.++...
T Consensus 465 ~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~~ 539 (774)
T KOG0731|consen 465 PALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGLR 539 (774)
T ss_pred HHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhccC
Confidence 9999999999999999999999999999999999885 7889999999999999999999999999999887644
No 51
>CHL00206 ycf2 Ycf2; Provisional
Probab=100.00 E-value=8e-37 Score=364.30 Aligned_cols=198 Identities=21% Similarity=0.356 Sum_probs=170.4
Q ss_pred cCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccchhcc----------cC------------
Q 004267 500 PVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW----------FG------------ 557 (764)
Q Consensus 500 ~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~~~~----------~g------------ 557 (764)
|........++|+.+++|+||+||||||||+||||+|++++.||+.|++++++.+| +|
T Consensus 1615 ~s~~kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~ 1694 (2281)
T CHL00206 1615 PSHGKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDID 1694 (2281)
T ss_pred cccCcCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccc
Confidence 33445566788999999999999999999999999999999999999999999765 22
Q ss_pred -------------------cchH--HHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCC
Q 004267 558 -------------------ESEA--NVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS 616 (764)
Q Consensus 558 -------------------~se~--~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~ 616 (764)
+++. .|+.+|+.|++.+||||||||||+++... .....+++||++||+..
T Consensus 1695 ~~~~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~d---------s~~ltL~qLLneLDg~~ 1765 (2281)
T CHL00206 1695 RDLDTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNE---------SNYLSLGLLVNSLSRDC 1765 (2281)
T ss_pred cccchhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCc---------cceehHHHHHHHhcccc
Confidence 2233 38999999999999999999999997641 11124899999999864
Q ss_pred ---CCCcEEEEecCCCCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHh--ccCCCCCc-ccHHHHHHHCCCCCHHH
Q 004267 617 ---AKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACL--RKSPVSKD-VDLRALAKYTQGFSGAD 690 (764)
Q Consensus 617 ---~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~--~~~~~~~~-~~l~~la~~~~g~sg~d 690 (764)
...+|+||||||+|+.|||||+||||||+.|+|+.|+..+|.+++..++ ++.++..+ +|+..+|+.|.||||||
T Consensus 1766 ~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGAD 1845 (2281)
T CHL00206 1766 ERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARD 1845 (2281)
T ss_pred ccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHH
Confidence 4568999999999999999999999999999999999999999998654 55566543 68999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 004267 691 ITEICQRACKYAIREN 706 (764)
Q Consensus 691 i~~~~~~a~~~a~~~~ 706 (764)
|.++|++|++.|+++.
T Consensus 1846 LanLvNEAaliAirq~ 1861 (2281)
T CHL00206 1846 LVALTNEALSISITQK 1861 (2281)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 9999999999999985
No 52
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8e-37 Score=314.05 Aligned_cols=229 Identities=45% Similarity=0.754 Sum_probs=214.5
Q ss_pred CCCCcccccChHHHHHHHHHHHHccccChhhhhhhC-CCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhhhh
Q 004267 203 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIG-VKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSK 281 (764)
Q Consensus 203 ~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~-i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~ 281 (764)
-.++|+||||++..++++++.+-+|+++|++|..-+ ..+++||||+||||||||++|+++|++.++.|+.|.++.+.++
T Consensus 87 I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~K 166 (386)
T KOG0737|consen 87 IGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSK 166 (386)
T ss_pred ceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchh
Confidence 467999999999999999999999999999996443 4789999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCe--EEEEEecCCCCCCCh
Q 004267 282 LAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAH--VIVIGATNRPNSIDP 359 (764)
Q Consensus 282 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~--v~vI~atn~~~~ld~ 359 (764)
|.|++++.++.+|..|..-+|+||||||+|+.+..|+....+....+..+++.+-|++..+.+ |+|+||||+|.++|.
T Consensus 167 WfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~DlDe 246 (386)
T KOG0737|consen 167 WFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFDLDE 246 (386)
T ss_pred hHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCccHHH
Confidence 999999999999999999999999999999999998666667778888999999999987654 999999999999999
Q ss_pred hhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCCCchhhhHHhhhcCCCchHHHHHHHHHHHHHHHHhhccc
Q 004267 360 ALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDV 433 (764)
Q Consensus 360 al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~ 433 (764)
++.| |+.+.++++.|+..+|.+||+..++.-.+.+++|+.++|..|.||+|.||..+|+.|+...++..+..
T Consensus 247 AiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~~ 318 (386)
T KOG0737|consen 247 AIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLVS 318 (386)
T ss_pred HHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHHh
Confidence 9999 99999999999999999999999999999999999999999999999999999999999988876543
No 53
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=9.7e-36 Score=353.41 Aligned_cols=267 Identities=49% Similarity=0.847 Sum_probs=237.6
Q ss_pred CCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhhhh
Q 004267 202 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSK 281 (764)
Q Consensus 202 ~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~ 281 (764)
.+.++|+|+||++..++.|++.+.+|+.+|++|+++++.+++++|||||||||||++|+++|++++.+|+.++++++.++
T Consensus 447 ~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~ 526 (733)
T TIGR01243 447 VPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSK 526 (733)
T ss_pred ccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhc
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCC-chHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCChh
Q 004267 282 LAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT-HGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPA 360 (764)
Q Consensus 282 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~-~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld~a 360 (764)
|.|+++..++.+|+.|+...|+||||||+|.+++.++.. .....++++.+|+..|+++....+++||+|||+|+.+|++
T Consensus 527 ~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~a 606 (733)
T TIGR01243 527 WVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPA 606 (733)
T ss_pred ccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHh
Confidence 999999999999999999999999999999999988643 3346688999999999999888899999999999999999
Q ss_pred hhccCCcceEEEecCCChHHHHHHHHHHhcCCCCCCchhhhHHhhhcCCCchHHHHHHHHHHHHHHHHhhcccccccc-c
Q 004267 361 LRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLED-E 439 (764)
Q Consensus 361 l~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~-~ 439 (764)
+.|+|||++.++++.|+.++|.+||+.+.+++++..++++..+|..|+||+|+|+..+|++|++.++++......... .
T Consensus 607 llRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~~~ 686 (733)
T TIGR01243 607 LLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKEKLE 686 (733)
T ss_pred hcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccchhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999887543221100 0
Q ss_pred hhhHHHhhhhcccchhhhccccccCCCCc
Q 004267 440 TIDAEILNSMAVSNEHFQTALGTSNPSAL 468 (764)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~al~~~~ps~~ 468 (764)
....+......++.+||..++...+|+..
T Consensus 687 ~~~~~~~~~~~i~~~~f~~al~~~~ps~~ 715 (733)
T TIGR01243 687 VGEEEFLKDLKVEMRHFLEALKKVKPSVS 715 (733)
T ss_pred cccccccccCcccHHHHHHHHHHcCCCCC
Confidence 00011122356889999999998888743
No 54
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-35 Score=335.39 Aligned_cols=250 Identities=50% Similarity=0.837 Sum_probs=233.2
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhhh
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~ 280 (764)
..+.++|.|+||++..++.+++.+++|+.+|+.|...++.++.++|||||||||||+||+++|.+++.+|+.+.++++.+
T Consensus 235 ~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~s 314 (494)
T COG0464 235 EDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLS 314 (494)
T ss_pred CCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhc
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCChh
Q 004267 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPA 360 (764)
Q Consensus 281 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld~a 360 (764)
+|.|+++++++.+|+.|+...||||||||+|++++.++...+....+++.+|+..|+++....+|+||++||+|+.+|++
T Consensus 315 k~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a 394 (494)
T COG0464 315 KWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPA 394 (494)
T ss_pred cccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHh
Confidence 99999999999999999999999999999999999998776666689999999999999999999999999999999999
Q ss_pred hhccCCcceEEEecCCChHHHHHHHHHHhcCCC--CCCchhhhHHhhhcCCCchHHHHHHHHHHHHHHHHhhcccccccc
Q 004267 361 LRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMK--LSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLED 438 (764)
Q Consensus 361 l~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~--l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~ 438 (764)
+.|+|||++.++++.|+..+|.+|++.+++... +..++++..+++.|.||+|+|+..+|++|++.++++..
T Consensus 395 ~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~------- 467 (494)
T COG0464 395 LLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREAR------- 467 (494)
T ss_pred hcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhc-------
Confidence 999999999999999999999999999998544 46789999999999999999999999999998887653
Q ss_pred chhhHHHhhhhcccchhhhccccccCCC
Q 004267 439 ETIDAEILNSMAVSNEHFQTALGTSNPS 466 (764)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~al~~~~ps 466 (764)
...++..||..++....|+
T Consensus 468 ---------~~~~~~~~~~~a~~~~~p~ 486 (494)
T COG0464 468 ---------RREVTLDDFLDALKKIKPS 486 (494)
T ss_pred ---------cCCccHHHHHHHHHhcCCC
Confidence 2347888999998887776
No 55
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=4.3e-35 Score=321.97 Aligned_cols=251 Identities=50% Similarity=0.823 Sum_probs=225.7
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhhh
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~ 280 (764)
..++++|+||||++++++.+++++.+|+.+|++|+.+|+.++++|||+||||||||++|+++|++++.+|+.++++++..
T Consensus 124 ~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~ 203 (389)
T PRK03992 124 ESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQ 203 (389)
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCch---HHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCC
Q 004267 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHG---EVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 357 (764)
Q Consensus 281 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~---~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~l 357 (764)
.+.|+.+..++.+|+.+....|+||||||+|.++..+..... ....+.+.+++..++++....++.||+|||+++.+
T Consensus 204 ~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~l 283 (389)
T PRK03992 204 KFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDIL 283 (389)
T ss_pred hhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhC
Confidence 999999999999999999999999999999999887654321 12234556777778887777789999999999999
Q ss_pred ChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCCCchhhhHHhhhcCCCchHHHHHHHHHHHHHHHHhhccccccc
Q 004267 358 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE 437 (764)
Q Consensus 358 d~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 437 (764)
|+++.|++||++.|+++.|+.++|.+||+.+++++.+..+.++..++..|+||+|+|+.++|++|++.++++..
T Consensus 284 d~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~~------ 357 (389)
T PRK03992 284 DPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDDR------ 357 (389)
T ss_pred CHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCC------
Confidence 99999999999999999999999999999999999998889999999999999999999999999998887632
Q ss_pred cchhhHHHhhhhcccchhhhccccccCCCCc
Q 004267 438 DETIDAEILNSMAVSNEHFQTALGTSNPSAL 468 (764)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~al~~~~ps~~ 468 (764)
..++.+||..|+..+.++..
T Consensus 358 -----------~~i~~~d~~~A~~~~~~~~~ 377 (389)
T PRK03992 358 -----------TEVTMEDFLKAIEKVMGKEE 377 (389)
T ss_pred -----------CCcCHHHHHHHHHHHhcccc
Confidence 24778889888888776543
No 56
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=2.4e-35 Score=323.35 Aligned_cols=246 Identities=47% Similarity=0.779 Sum_probs=221.5
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhhh
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~ 280 (764)
..+.++|+||||++.++++|++++.+|+.+|++|+++|+.+++++|||||||||||++|+++|++++..|+.+.++++.+
T Consensus 176 ~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~ 255 (438)
T PTZ00361 176 KAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQ 255 (438)
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchH---HHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCC
Q 004267 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGE---VERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 357 (764)
Q Consensus 281 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~---~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~l 357 (764)
.+.|+.+..++.+|+.|....|+||||||+|.++.++....+. ...+.+.+++..++++....++.||++||+++.+
T Consensus 256 k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~L 335 (438)
T PTZ00361 256 KYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESL 335 (438)
T ss_pred hhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHh
Confidence 9999999999999999999999999999999999876543222 1234556778888888777789999999999999
Q ss_pred ChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCCCchhhhHHhhhcCCCchHHHHHHHHHHHHHHHHhhccccccc
Q 004267 358 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE 437 (764)
Q Consensus 358 d~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 437 (764)
|+++.|+|||++.|+++.|+.++|.+||+.++.++.+..++++..++..++||+|+|+.++|.+|++.++++..
T Consensus 336 DpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~r------ 409 (438)
T PTZ00361 336 DPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRERR------ 409 (438)
T ss_pred hHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcC------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887642
Q ss_pred cchhhHHHhhhhcccchhhhcccccc
Q 004267 438 DETIDAEILNSMAVSNEHFQTALGTS 463 (764)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~al~~~ 463 (764)
..++.+||..|+..+
T Consensus 410 -----------~~Vt~~D~~~A~~~v 424 (438)
T PTZ00361 410 -----------MKVTQADFRKAKEKV 424 (438)
T ss_pred -----------CccCHHHHHHHHHHH
Confidence 236677777776654
No 57
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=100.00 E-value=3.3e-35 Score=305.33 Aligned_cols=192 Identities=21% Similarity=0.255 Sum_probs=166.8
Q ss_pred hccCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccchhcccCcchHHHHHHHHHHhh-----CCCeEEEEecc
Q 004267 509 KFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQ-----SAPCVLFFDEL 583 (764)
Q Consensus 509 ~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~-----~~p~iifiDEi 583 (764)
..|+++|.+++||||||||||++|+++|++++.+|+.++++++.++|+|++|+.+|++|+.|+. .+|||||||||
T Consensus 142 ~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEI 221 (413)
T PLN00020 142 LPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDL 221 (413)
T ss_pred ccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehh
Confidence 3678999999999999999999999999999999999999999999999999999999999985 46999999999
Q ss_pred cchhhccCCCCCCCCcchHHHH-HHHHHhhcCC------------CCCCcEEEEecCCCCCCCCccCCCCCccceEEeec
Q 004267 584 DSIATQRGSSVGDAGGAADRVL-NQLLTEMDGM------------SAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIP 650 (764)
Q Consensus 584 d~l~~~r~~~~~~~~~~~~~~~-~~lL~~ld~~------------~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~ 650 (764)
|++++.|+.. ......+++ .+||+.||+. ....+|+||+|||+|+.|||+|+||||||+.+ +
T Consensus 222 DA~~g~r~~~---~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~ 296 (413)
T PLN00020 222 DAGAGRFGTT---QYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--W 296 (413)
T ss_pred hhcCCCCCCC---CcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--C
Confidence 9999998743 233445665 8999999863 23568999999999999999999999999965 5
Q ss_pred CCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCC----CCHHHHHHHHHHHHHHHHHHH
Q 004267 651 LPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQG----FSGADITEICQRACKYAIREN 706 (764)
Q Consensus 651 ~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g----~sg~di~~~~~~a~~~a~~~~ 706 (764)
.|+.++|.+||+.++++.+++ ..|+..|+..+.| |+||--..+..++...-+.+.
T Consensus 297 lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar~yd~~v~~~i~~~ 355 (413)
T PLN00020 297 APTREDRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRARVYDDEVRKWIAEV 355 (413)
T ss_pred CCCHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHHHHHHHHHHHHHHh
Confidence 899999999999999999887 5889999998876 778777777777766666554
No 58
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-34 Score=320.52 Aligned_cols=230 Identities=47% Similarity=0.787 Sum_probs=216.5
Q ss_pred CCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhhhhc
Q 004267 203 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKL 282 (764)
Q Consensus 203 ~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~ 282 (764)
..++|.|+.|.++.++.+.|+++. ++.|.-|..+|..-|+||||+||||||||+|||++|++.+.+|+.++|++++..+
T Consensus 145 ~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemf 223 (596)
T COG0465 145 VKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMF 223 (596)
T ss_pred cCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhh
Confidence 468999999999999999999997 9999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCC---chHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCCh
Q 004267 283 AGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT---HGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDP 359 (764)
Q Consensus 283 ~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld~ 359 (764)
+|-...++|.+|.+|+++.|||+||||||++..+|+.. ..+..+...+||+..||++..+..|+|+++||+|+-+|+
T Consensus 224 VGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~ 303 (596)
T COG0465 224 VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDP 303 (596)
T ss_pred cCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccchH
Confidence 99999999999999999999999999999999998643 223334578999999999998889999999999999999
Q ss_pred hhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCCCchhhhHHhhhcCCCchHHHHHHHHHHHHHHHHhhccc
Q 004267 360 ALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDV 433 (764)
Q Consensus 360 al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~ 433 (764)
+|.||||||+.|.++.||..+|.+|++.|.++.++..++++..+|+.|.||+|+|+.+++.+|+..+.++....
T Consensus 304 ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~~ 377 (596)
T COG0465 304 ALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKKE 377 (596)
T ss_pred hhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999988876443
No 59
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=100.00 E-value=2.8e-33 Score=331.23 Aligned_cols=435 Identities=24% Similarity=0.358 Sum_probs=297.0
Q ss_pred CCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCeEEEEe
Q 004267 205 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFCIN 274 (764)
Q Consensus 205 ~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l----------~~~~i~v~ 274 (764)
=.++++.|.+++++++.+++.. ....+++|+||||||||++++.+|..+ +..++.++
T Consensus 179 ~~l~~~igr~~ei~~~~~~L~~-------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~ 245 (731)
T TIGR02639 179 GKIDPLIGREDELERTIQVLCR-------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLD 245 (731)
T ss_pred CCCCcccCcHHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEec
Confidence 3567899999999887766643 234679999999999999999999987 67788999
Q ss_pred chhhh--hhccchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecC
Q 004267 275 GPEIM--SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATN 352 (764)
Q Consensus 275 ~~~l~--~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn 352 (764)
...+. .++.|+.+.+++.+|+.+....++||||||+|.++..+....+..+ +.+.|...+ .++.+.+||+|+
T Consensus 246 ~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~--~~~~L~~~l----~~g~i~~IgaTt 319 (731)
T TIGR02639 246 MGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMD--ASNLLKPAL----SSGKLRCIGSTT 319 (731)
T ss_pred HHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHH--HHHHHHHHH----hCCCeEEEEecC
Confidence 88887 4788999999999999998888999999999999876543333222 222233333 457899999999
Q ss_pred CCC-----CCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCC----C-CCchhhhHHhhhcCCCchHH-----HHH
Q 004267 353 RPN-----SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMK----L-SDDVDLERIAKDTHGYVGAD-----LAA 417 (764)
Q Consensus 353 ~~~-----~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~----l-~~~~~l~~la~~t~g~~~~d-----l~~ 417 (764)
..+ ..|+++.| ||. .|+++.|+.+++.+||+.....+. + ..+..+..++..++.|.+.. ...
T Consensus 320 ~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai~ 396 (731)
T TIGR02639 320 YEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAID 396 (731)
T ss_pred HHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHHHH
Confidence 643 57999999 995 699999999999999996554321 1 23445777777777776542 244
Q ss_pred HHHHHHHHHHHhhccccccccchhhHHHhhhhcccchhhhccccccCCCCcceeeeeccCcccc--------------cc
Q 004267 418 LCTEAALQCIREKMDVIDLEDETIDAEILNSMAVSNEHFQTALGTSNPSALRETVVEVPNVSWE--------------DI 483 (764)
Q Consensus 418 l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~ps~~~~~~~~~~~v~~~--------------~i 483 (764)
++.+|+....-+... .....++.+++...+..... +....+.|+ .|
T Consensus 397 lld~a~a~~~~~~~~-------------~~~~~v~~~~i~~~i~~~tg-------iP~~~~~~~~~~~l~~l~~~l~~~v 456 (731)
T TIGR02639 397 VIDEAGASFRLRPKA-------------KKKANVSVKDIENVVAKMAH-------IPVKTVSVDDREKLKNLEKNLKAKI 456 (731)
T ss_pred HHHHhhhhhhcCccc-------------ccccccCHHHHHHHHHHHhC-------CChhhhhhHHHHHHHHHHHHHhcce
Confidence 555554321100000 00122444455444433210 011122333 34
Q ss_pred ccchhhhhcccceeeccCCChhhhhhccCC----CCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccchh------
Q 004267 484 GGLENVKRELQETVQYPVEHPEKFEKFGMS----PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT------ 553 (764)
Q Consensus 484 ~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~----~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~~------ 553 (764)
.|++++.+.+.+.+.. .+.|+. |...+||+||||||||++|+++|..++.+++.++++++..
T Consensus 457 ~GQ~~ai~~l~~~i~~--------~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~ 528 (731)
T TIGR02639 457 FGQDEAIDSLVSSIKR--------SRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSR 528 (731)
T ss_pred eCcHHHHHHHHHHHHH--------HhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHH
Confidence 5555555554443322 122332 2334899999999999999999999999999999988643
Q ss_pred ------cccCcchHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCC---------CC
Q 004267 554 ------MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS---------AK 618 (764)
Q Consensus 554 ------~~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~---------~~ 618 (764)
.|+|.. ..+.+.+..+..+.+|+||||||.+ +..+.+.||+.||... +.
T Consensus 529 lig~~~gyvg~~--~~~~l~~~~~~~p~~VvllDEieka--------------~~~~~~~Ll~~ld~g~~~d~~g~~vd~ 592 (731)
T TIGR02639 529 LIGAPPGYVGFE--QGGLLTEAVRKHPHCVLLLDEIEKA--------------HPDIYNILLQVMDYATLTDNNGRKADF 592 (731)
T ss_pred HhcCCCCCcccc--hhhHHHHHHHhCCCeEEEEechhhc--------------CHHHHHHHHHhhccCeeecCCCcccCC
Confidence 233322 2334566667788899999999974 3567888898888641 24
Q ss_pred CcEEEEecCCCCC-------------------------CCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccC-----
Q 004267 619 KTVFIIGATNRPD-------------------------IIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKS----- 668 (764)
Q Consensus 619 ~~v~vi~aTn~~~-------------------------~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~----- 668 (764)
++++||+|||... .+.|.|+. |||.+|.|.+.+.++..+|++..+++.
T Consensus 593 ~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~ 670 (731)
T TIGR02639 593 RNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVDELSKQLN 670 (731)
T ss_pred CCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5788999998732 24566664 999999999999999999999887531
Q ss_pred --CCC---CcccHHHHHHH--CCCCCHHHHHHHHHHHHHHHHHHHH
Q 004267 669 --PVS---KDVDLRALAKY--TQGFSGADITEICQRACKYAIRENI 707 (764)
Q Consensus 669 --~~~---~~~~l~~la~~--~~g~sg~di~~~~~~a~~~a~~~~~ 707 (764)
++. ++.-++.|++. ...|..+.|+.+++.-...++.+.+
T Consensus 671 ~~~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~~l~~~~ 716 (731)
T TIGR02639 671 EKNIKLELTDDAKKYLAEKGYDEEFGARPLARVIQEEIKKPLSDEI 716 (731)
T ss_pred hCCCeEEeCHHHHHHHHHhCCCcccCchHHHHHHHHHhHHHHHHHH
Confidence 122 12224556654 3456677888888877777766654
No 60
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-32 Score=317.19 Aligned_cols=447 Identities=22% Similarity=0.317 Sum_probs=293.7
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCeEEEEec
Q 004267 206 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFCING 275 (764)
Q Consensus 206 ~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l----------~~~~i~v~~ 275 (764)
.++.+.|-++.+.++.+.+.. ....++||+||||||||++++.++..+ +..++.++.
T Consensus 184 ~~~~liGR~~ei~~~i~iL~r-------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~ 250 (758)
T PRK11034 184 GIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI 250 (758)
T ss_pred CCCcCcCCCHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccH
Confidence 356688899988888776654 234678999999999999999999864 445566665
Q ss_pred hhhh--hhccchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCC
Q 004267 276 PEIM--SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNR 353 (764)
Q Consensus 276 ~~l~--~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~ 353 (764)
..+. .++.|+.+.+++.+|..+....++||||||+|.++..+....+..+ +.+++..+..++.+.+||+|+.
T Consensus 251 ~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d------~~nlLkp~L~~g~i~vIgATt~ 324 (758)
T PRK11034 251 GSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVD------AANLIKPLLSSGKIRVIGSTTY 324 (758)
T ss_pred HHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHH------HHHHHHHHHhCCCeEEEecCCh
Confidence 5555 4678899999999999998888899999999999877643332222 2233334445678999999997
Q ss_pred CC-----CCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCCCchh-----hhHHhhhcCC-----CchHHHHHH
Q 004267 354 PN-----SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVD-----LERIAKDTHG-----YVGADLAAL 418 (764)
Q Consensus 354 ~~-----~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~~~~-----l~~la~~t~g-----~~~~dl~~l 418 (764)
++ ..|++|.| ||. .|.++.|+.+++.+||+.+..++....++. +...+..+.. +.+.....+
T Consensus 325 ~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaidl 401 (758)
T PRK11034 325 QEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDV 401 (758)
T ss_pred HHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHHH
Confidence 64 56999998 995 799999999999999998776655444333 3333333444 344456777
Q ss_pred HHHHHHHHHHhhccccccccchhhHHHhhhhcccchhhhccccccC--CCC-cc----eeeeeccCccccccccchhhhh
Q 004267 419 CTEAALQCIREKMDVIDLEDETIDAEILNSMAVSNEHFQTALGTSN--PSA-LR----ETVVEVPNVSWEDIGGLENVKR 491 (764)
Q Consensus 419 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~--ps~-~~----~~~~~~~~v~~~~i~g~~~~k~ 491 (764)
+.+|+....-. +. .. ....++..++...+.... |.. +. +........--..|.|++++.+
T Consensus 402 ldea~a~~~~~--~~-~~----------~~~~v~~~~i~~v~~~~tgip~~~~~~~~~~~l~~l~~~L~~~ViGQ~~ai~ 468 (758)
T PRK11034 402 IDEAGARARLM--PV-SK----------RKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIE 468 (758)
T ss_pred HHHHHHhhccC--cc-cc----------cccccChhhHHHHHHHHhCCChhhhhhhHHHHHHHHHHHhcceEeCcHHHHH
Confidence 87776532100 00 00 001122223322221111 000 00 0000111111234788888888
Q ss_pred cccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccch-----hcccCcchHH----
Q 004267 492 ELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-----TMWFGESEAN---- 562 (764)
Q Consensus 492 ~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~-----~~~~g~se~~---- 562 (764)
.+.+.+...... +.. .-+|...+||+||||||||++|+++|..++.+|+.++++++. ++++|.....
T Consensus 469 ~l~~~i~~~~~g---l~~-~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~ 544 (758)
T PRK11034 469 ALTEAIKMSRAG---LGH-EHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFD 544 (758)
T ss_pred HHHHHHHHHhcc---ccC-CCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCCCccccc
Confidence 887766432110 000 112334599999999999999999999999999999998764 2333432211
Q ss_pred -HHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCC---------CCCcEEEEecCCCC--
Q 004267 563 -VREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS---------AKKTVFIIGATNRP-- 630 (764)
Q Consensus 563 -i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~---------~~~~v~vi~aTn~~-- 630 (764)
-+.+.+..+..+.+|+||||||.+ ...+.+.||+.||... +.++++||+|||.-
T Consensus 545 ~~g~L~~~v~~~p~sVlllDEieka--------------~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~ 610 (758)
T PRK11034 545 QGGLLTDAVIKHPHAVLLLDEIEKA--------------HPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVR 610 (758)
T ss_pred ccchHHHHHHhCCCcEEEeccHhhh--------------hHHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHH
Confidence 123445556677799999999985 3467888999888431 23578999999932
Q ss_pred -----------------------CCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhcc-------CCCCCccc---HH
Q 004267 631 -----------------------DIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRK-------SPVSKDVD---LR 677 (764)
Q Consensus 631 -----------------------~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~-------~~~~~~~~---l~ 677 (764)
..+.|.|+. |+|.+|.|++.+.++..+|+..++++ .++.-.++ ++
T Consensus 611 ~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~~~~~~~ 688 (758)
T PRK11034 611 ETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQEARD 688 (758)
T ss_pred HHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCceECHHHHH
Confidence 124567776 99999999999999999999877642 23332222 45
Q ss_pred HHHHHC--CCCCHHHHHHHHHHHHHHHHHHHH
Q 004267 678 ALAKYT--QGFSGADITEICQRACKYAIRENI 707 (764)
Q Consensus 678 ~la~~~--~g~sg~di~~~~~~a~~~a~~~~~ 707 (764)
.|++.. ..|-.+.|+.+++.-...++.+.+
T Consensus 689 ~l~~~~~~~~~GAR~l~r~i~~~l~~~la~~i 720 (758)
T PRK11034 689 WLAEKGYDRAMGARPMARVIQDNLKKPLANEL 720 (758)
T ss_pred HHHHhCCCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 566432 345567888888777777766654
No 61
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=1.4e-32 Score=306.04 Aligned_cols=242 Identities=24% Similarity=0.404 Sum_probs=210.9
Q ss_pred CCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhhhhc
Q 004267 203 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKL 282 (764)
Q Consensus 203 ~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~ 282 (764)
+.++|+||||++..++.+++.... ++....++|+.+++|||||||||||||++|+++|++++.+++.+++..+.+++
T Consensus 223 ~~~~~~dvgGl~~lK~~l~~~~~~---~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~ 299 (489)
T CHL00195 223 VNEKISDIGGLDNLKDWLKKRSTS---FSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGI 299 (489)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHH---hhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccc
Confidence 467899999999999988765432 23455678999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCC-CchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCChhh
Q 004267 283 AGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREK-THGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPAL 361 (764)
Q Consensus 283 ~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~-~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld~al 361 (764)
.|+++.+++.+|+.|....||||||||+|.++.++.. ..+....++..+++.+|+.. ..+++||+|||+++.+|+++
T Consensus 300 vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~--~~~V~vIaTTN~~~~Ld~al 377 (489)
T CHL00195 300 VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEK--KSPVFVVATANNIDLLPLEI 377 (489)
T ss_pred cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcC--CCceEEEEecCChhhCCHHH
Confidence 9999999999999999999999999999999875432 33456678889999998853 45899999999999999999
Q ss_pred hccCCcceEEEecCCChHHHHHHHHHHhcCCCC--CCchhhhHHhhhcCCCchHHHHHHHHHHHHHHHHhhccccccccc
Q 004267 362 RRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL--SDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDE 439 (764)
Q Consensus 362 ~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l--~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~ 439 (764)
.|+|||++.++++.|+.++|.+|++.++++... ..+.++..++..|+||+|+||.++|.+|...++.+.
T Consensus 378 lR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~--------- 448 (489)
T CHL00195 378 LRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEK--------- 448 (489)
T ss_pred hCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC---------
Confidence 999999999999999999999999999987643 247789999999999999999999999988776432
Q ss_pred hhhHHHhhhhcccchhhhccccccCCCC
Q 004267 440 TIDAEILNSMAVSNEHFQTALGTSNPSA 467 (764)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~al~~~~ps~ 467 (764)
..++.+||..++..+.|.+
T Consensus 449 ---------~~lt~~dl~~a~~~~~Pls 467 (489)
T CHL00195 449 ---------REFTTDDILLALKQFIPLA 467 (489)
T ss_pred ---------CCcCHHHHHHHHHhcCCCc
Confidence 2367888999999888865
No 62
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=3.6e-32 Score=297.91 Aligned_cols=245 Identities=53% Similarity=0.863 Sum_probs=217.2
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhhh
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~ 280 (764)
..+.++|+|+||+++++++|++.+.+|+.+|++|..+|+.+++++||+||||||||++++++|++++..++.+.+.++..
T Consensus 115 ~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~ 194 (364)
T TIGR01242 115 ERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVR 194 (364)
T ss_pred cCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHH
Confidence 35778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchH---HHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCC
Q 004267 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGE---VERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 357 (764)
Q Consensus 281 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~---~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~l 357 (764)
.+.|+....++.+|+.+....|++|||||+|.++..+...... ...+.+.+++..++++....++.||++||+++.+
T Consensus 195 ~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~l 274 (364)
T TIGR01242 195 KYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDIL 274 (364)
T ss_pred HhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhC
Confidence 9999999999999999999999999999999998766433221 2234456677777777666789999999999999
Q ss_pred ChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCCCchhhhHHhhhcCCCchHHHHHHHHHHHHHHHHhhccccccc
Q 004267 358 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE 437 (764)
Q Consensus 358 d~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 437 (764)
|+++.|++||++.++++.|+.++|.+|++.++.++.+..+.++..++..+.||+|+|+..+|.+|++.++++..
T Consensus 275 d~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~~------ 348 (364)
T TIGR01242 275 DPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREER------ 348 (364)
T ss_pred ChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCC------
Confidence 99999999999999999999999999999999999888888999999999999999999999999999887642
Q ss_pred cchhhHHHhhhhcccchhhhccccc
Q 004267 438 DETIDAEILNSMAVSNEHFQTALGT 462 (764)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~al~~ 462 (764)
..++.+||..|+..
T Consensus 349 -----------~~i~~~d~~~a~~~ 362 (364)
T TIGR01242 349 -----------DYVTMDDFIKAVEK 362 (364)
T ss_pred -----------CccCHHHHHHHHHH
Confidence 23666777766543
No 63
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-33 Score=279.72 Aligned_cols=229 Identities=43% Similarity=0.760 Sum_probs=209.0
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhhh
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~ 280 (764)
...+++|+.+||+-.++..+++.+++|+..|++|..+||.+|++++||||||+|||.+|+++|..++..|+.+..+.+.+
T Consensus 125 ~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~ 204 (388)
T KOG0651|consen 125 DPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVD 204 (388)
T ss_pred CccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHH---HhhcccCCCeEEEEEecCCCCCC
Q 004267 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLT---LMDGLKSRAHVIVIGATNRPNSI 357 (764)
Q Consensus 281 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~---~ld~~~~~~~v~vI~atn~~~~l 357 (764)
++.|++...+|+.|..|....|||||+||||++...+......-++.+..+|++ .|+++....+|-+|.|||+|+.+
T Consensus 205 kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtL 284 (388)
T KOG0651|consen 205 KYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTL 284 (388)
T ss_pred hhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCcccc
Confidence 999999999999999999999999999999999988754444444555555555 45566667899999999999999
Q ss_pred ChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCCCchhhhHHhhhcCCCchHHHHHHHHHHHHHHHHh
Q 004267 358 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIRE 429 (764)
Q Consensus 358 d~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~ 429 (764)
+|+|.|+||+++.+++|.|++..|..|++.|...+......+.+.+.+..+||.|+|+...|.||.+.+++.
T Consensus 285 dpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~ 356 (388)
T KOG0651|consen 285 DPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPE 356 (388)
T ss_pred chhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccch
Confidence 999999999999999999999999999999999988888888999999999999999999999998766544
No 64
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=2.9e-32 Score=309.97 Aligned_cols=228 Identities=47% Similarity=0.795 Sum_probs=210.2
Q ss_pred CCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhhhh
Q 004267 202 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSK 281 (764)
Q Consensus 202 ~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~ 281 (764)
.+.++|+|++|+++.++++++++.. +++|+.|.++|..+++++||+||||||||++++++|++++.+++.++++++.+.
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~ 127 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 127 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHH
Confidence 4678999999999999999999987 899999999999999999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCC---chHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCC
Q 004267 282 LAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT---HGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSID 358 (764)
Q Consensus 282 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld 358 (764)
+.|.....++.+|+.+....|+||||||+|.++++++.. ......+++.+|+..|+++..+.+++||++||+++.+|
T Consensus 128 ~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld 207 (495)
T TIGR01241 128 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLD 207 (495)
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcC
Confidence 999999999999999999999999999999999877542 12334577889999999998888999999999999999
Q ss_pred hhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCCCchhhhHHhhhcCCCchHHHHHHHHHHHHHHHHhh
Q 004267 359 PALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREK 430 (764)
Q Consensus 359 ~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~ 430 (764)
++++|++||++.++++.|+.++|.+|++.++++.++..+.++..++..+.||+++|+..+|++|+..+.++.
T Consensus 208 ~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~ 279 (495)
T TIGR01241 208 PALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKN 279 (495)
T ss_pred HHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999998888788899999999999999999999999988776543
No 65
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=7.3e-32 Score=299.41 Aligned_cols=221 Identities=43% Similarity=0.715 Sum_probs=196.7
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCe----------E
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------F 270 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~----------~ 270 (764)
..++++|+||||++.+++++++.+.+|+.+|++|..+|+.+++++|||||||||||++++++|++++.. |
T Consensus 175 ~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~f 254 (512)
T TIGR03689 175 EVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYF 254 (512)
T ss_pred cCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeE
Confidence 457899999999999999999999999999999999999999999999999999999999999998543 6
Q ss_pred EEEechhhhhhccchhHHHHHHHHHHHHhc----CCeEEEEccccccCCCCCCC-chHHHHHHHHHHHHHhhcccCCCeE
Q 004267 271 FCINGPEIMSKLAGESESNLRKAFEEAEKN----APSIIFIDEIDSIAPKREKT-HGEVERRIVSQLLTLMDGLKSRAHV 345 (764)
Q Consensus 271 i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~----~p~il~iDEid~l~~~~~~~-~~~~~~~v~~~Ll~~ld~~~~~~~v 345 (764)
+.+.++++.++|.|+++..++.+|+.+... .|+||||||+|.++.+++.. .++.+.+++.+|++.|+++....++
T Consensus 255 l~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~V 334 (512)
T TIGR03689 255 LNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNV 334 (512)
T ss_pred EeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCce
Confidence 677888999999999999999999988763 69999999999999887643 4567788999999999999888899
Q ss_pred EEEEecCCCCCCChhhhccCCcceEEEecCCChHHHHHHHHHHhcC-CCCCCchhhhHHhhhcCCCchHHHHHHHHHHHH
Q 004267 346 IVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKN-MKLSDDVDLERIAKDTHGYVGADLAALCTEAAL 424 (764)
Q Consensus 346 ~vI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~-~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~ 424 (764)
+||++||+++.|||++.|+|||+..|+++.|+.++|.+|++.++.. +++ + .....+.|+.++++.++|+++..
T Consensus 335 iVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l--~----~~l~~~~g~~~a~~~al~~~av~ 408 (512)
T TIGR03689 335 IVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPL--D----ADLAEFDGDREATAAALIQRAVD 408 (512)
T ss_pred EEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCc--h----HHHHHhcCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988754 343 1 22345799999999999999876
Q ss_pred HHH
Q 004267 425 QCI 427 (764)
Q Consensus 425 ~~~ 427 (764)
..+
T Consensus 409 ~~~ 411 (512)
T TIGR03689 409 HLY 411 (512)
T ss_pred HHh
Confidence 544
No 66
>CHL00176 ftsH cell division protein; Validated
Probab=99.97 E-value=5.8e-31 Score=301.95 Aligned_cols=227 Identities=44% Similarity=0.771 Sum_probs=207.7
Q ss_pred CCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhhhhc
Q 004267 203 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKL 282 (764)
Q Consensus 203 ~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~ 282 (764)
..++|+|++|+++.++.+.+++.. +++|+.|..++...++++||+||||||||++|+++|++.+.+++.++++++...+
T Consensus 178 ~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~ 256 (638)
T CHL00176 178 TGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMF 256 (638)
T ss_pred CCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHh
Confidence 467999999999999999999887 8899999999999999999999999999999999999999999999999998888
Q ss_pred cchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCC---chHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCCh
Q 004267 283 AGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT---HGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDP 359 (764)
Q Consensus 283 ~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld~ 359 (764)
.|.....++.+|+.+....||||||||+|.++..++.. .......++.+|+..|+++..+.+++||++||+++.+|+
T Consensus 257 ~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ 336 (638)
T CHL00176 257 VGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDA 336 (638)
T ss_pred hhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhh
Confidence 88888899999999999999999999999998776532 223335677889999999888889999999999999999
Q ss_pred hhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCCCchhhhHHhhhcCCCchHHHHHHHHHHHHHHHHhh
Q 004267 360 ALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREK 430 (764)
Q Consensus 360 al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~ 430 (764)
++.|+|||++.+.++.|+.++|.+||+.++++..+..+.++..++..+.||+++|+..+|++|+..+.++.
T Consensus 337 ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~ 407 (638)
T CHL00176 337 ALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRK 407 (638)
T ss_pred hhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999998888888899999999999999999999999998776554
No 67
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.9e-30 Score=277.26 Aligned_cols=261 Identities=41% Similarity=0.655 Sum_probs=221.2
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhhh
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~ 280 (764)
...++.|+|++|++..++.+.+++.+|+..|.+|..+. .+.+++||.||||+|||+|+++||.+.++.|+.++++.+.+
T Consensus 146 ~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLts 224 (428)
T KOG0740|consen 146 TLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTS 224 (428)
T ss_pred cCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhh
Confidence 45679999999999999999999999999999998764 66789999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhccc--CCCeEEEEEecCCCCCCC
Q 004267 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK--SRAHVIVIGATNRPNSID 358 (764)
Q Consensus 281 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~--~~~~v~vI~atn~~~~ld 358 (764)
+|.|+++..++.+|+-|+..+|+|+||||+|.++.++.....+..+++..+++-.+++.. ...+|+||||||+|+.+|
T Consensus 225 K~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~D 304 (428)
T KOG0740|consen 225 KYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELD 304 (428)
T ss_pred hccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHH
Confidence 999999999999999999999999999999999999966666677788877776666654 356899999999999999
Q ss_pred hhhhccCCcceEEEecCCChHHHHHHHHHHhcCCC-CCCchhhhHHhhhcCCCchHHHHHHHHHHHHHHHHhhccccccc
Q 004267 359 PALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMK-LSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE 437 (764)
Q Consensus 359 ~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~-l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 437 (764)
.+++| ||.+.+++|.|+.+.|..+|+.++...+ ...+.+++.+++.|+||++.|+.++|++|++...+.......+
T Consensus 305 ea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~~~~~- 381 (428)
T KOG0740|consen 305 EAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELGGTTDL- 381 (428)
T ss_pred HHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhcccchhh-
Confidence 99999 9999999999999999999998877663 3355789999999999999999999999998766554332011
Q ss_pred cchhhHHHhhhhcccchhhhccccccCCCCc
Q 004267 438 DETIDAEILNSMAVSNEHFQTALGTSNPSAL 468 (764)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~al~~~~ps~~ 468 (764)
..+. ......++..+|..++..+.|+..
T Consensus 382 -~~~~--~~~~r~i~~~df~~a~~~i~~~~s 409 (428)
T KOG0740|consen 382 -EFID--ADKIRPITYPDFKNAFKNIKPSVS 409 (428)
T ss_pred -hhcc--hhccCCCCcchHHHHHHhhccccC
Confidence 0111 112344667778887777766543
No 68
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.97 E-value=1.1e-28 Score=293.32 Aligned_cols=454 Identities=21% Similarity=0.321 Sum_probs=280.4
Q ss_pred CCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhC----------CeEEEE
Q 004267 204 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG----------AFFFCI 273 (764)
Q Consensus 204 ~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~----------~~~i~v 273 (764)
+-.++++.|.++.+.++.+.+.. ....+++|+||||||||++++.+|..+. ..++.+
T Consensus 183 ~~~ld~~iGr~~ei~~~i~~l~r-------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l 249 (852)
T TIGR03345 183 EGKIDPVLGRDDEIRQMIDILLR-------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSL 249 (852)
T ss_pred CCCCCcccCCHHHHHHHHHHHhc-------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEe
Confidence 34677899999987766655533 2345799999999999999999999862 446666
Q ss_pred echhhh--hhccchhHHHHHHHHHHHHh-cCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEe
Q 004267 274 NGPEIM--SKLAGESESNLRKAFEEAEK-NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGA 350 (764)
Q Consensus 274 ~~~~l~--~~~~g~~~~~l~~vf~~a~~-~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~a 350 (764)
+...+. ..+.|+.+.+++.+|+.+.. ..+.||||||+|.+...++... ..+ .. ++|.....++.+.+||+
T Consensus 250 ~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~-~~d--~~----n~Lkp~l~~G~l~~Iga 322 (852)
T TIGR03345 250 DLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAG-QGD--AA----NLLKPALARGELRTIAA 322 (852)
T ss_pred ehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccc-ccc--HH----HHhhHHhhCCCeEEEEe
Confidence 666655 36889999999999999875 4678999999999987654321 111 11 22333345778999999
Q ss_pred cCCCC-----CCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCC-----CCchhhhHHhhhcCCCchH-----HH
Q 004267 351 TNRPN-----SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-----SDDVDLERIAKDTHGYVGA-----DL 415 (764)
Q Consensus 351 tn~~~-----~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l-----~~~~~l~~la~~t~g~~~~-----dl 415 (764)
|+..+ ..|++|.| || ..|.++.|+.+++..||+.+.+.+.. ..+..+..++..+++|... ..
T Consensus 323 TT~~e~~~~~~~d~AL~r--Rf-~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDKA 399 (852)
T TIGR03345 323 TTWAEYKKYFEKDPALTR--RF-QVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDKA 399 (852)
T ss_pred cCHHHHhhhhhccHHHHH--hC-eEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCccHH
Confidence 98643 47999999 99 57999999999999998766554331 1344577788888877653 22
Q ss_pred HHHHHHHHHHH-HHhhccccc-----------------c--------ccc-h---hhHH------Hhhhh--------cc
Q 004267 416 AALCTEAALQC-IREKMDVID-----------------L--------EDE-T---IDAE------ILNSM--------AV 451 (764)
Q Consensus 416 ~~l~~~a~~~~-~~~~~~~~~-----------------~--------~~~-~---~~~~------~~~~~--------~~ 451 (764)
..++.+|+... +........ . ... . ...+ ....+ ..
T Consensus 400 Idlldea~a~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (852)
T TIGR03345 400 VSLLDTACARVALSQNATPAALEDLRRRIAALELELDALEREAALGADHDERLAELRAELAALEAELAALEARWQQEKEL 479 (852)
T ss_pred HHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444443211 110000000 0 000 0 0000 00000 00
Q ss_pred c-------------------c--------hhhhccccc-----------cCCCCcceee---eecc--Ccc---------
Q 004267 452 S-------------------N--------EHFQTALGT-----------SNPSALRETV---VEVP--NVS--------- 479 (764)
Q Consensus 452 ~-------------------~--------~~~~~al~~-----------~~ps~~~~~~---~~~~--~v~--------- 479 (764)
. . ......+.. +.+....+.+ ..+| .+.
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~vv~~~tgip~~~~~~~e~~~l~~ 559 (852)
T TIGR03345 480 VEAILALRAELEADADAPADDDAALRAQLAELEAALASAQGEEPLVFPEVDAQAVAEVVADWTGIPVGRMVRDEIEAVLS 559 (852)
T ss_pred HHHHHHHHHHhhhcccchhhhhHHHHHHHHHHHHHHHHHhhccccccceecHHHHHHHHHHHHCCCchhhchhHHHHHHH
Confidence 0 0 000000000 0000000000 0001 011
Q ss_pred -----ccccccchhhhhcccceeeccCCChhhhhhccCC---CCcc-eeeeCCCCCChhHHHHHHHHHh---CCeeEEEe
Q 004267 480 -----WEDIGGLENVKRELQETVQYPVEHPEKFEKFGMS---PSKG-VLFYGPPGCGKTLLAKAIANEC---QANFISVK 547 (764)
Q Consensus 480 -----~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~---~~~g-ill~GppGtGKT~lak~lA~~~---~~~~i~v~ 547 (764)
-..|.|++.+.+.+.+.+... +.|+. .|.| +||+||||||||.+|+++|..+ ...++.++
T Consensus 560 l~~~L~~~v~GQ~~Av~~v~~~i~~~--------~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~d 631 (852)
T TIGR03345 560 LPDRLAERVIGQDHALEAIAERIRTA--------RAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITIN 631 (852)
T ss_pred HHHHhcCeEcChHHHHHHHHHHHHHH--------hcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEe
Confidence 123455555555544443321 11221 2333 8999999999999999999987 45789999
Q ss_pred cccchh------------cccCcchHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCC
Q 004267 548 GPELLT------------MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGM 615 (764)
Q Consensus 548 ~~~l~~------------~~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~ 615 (764)
++++.. .|+|..+. +.+.+..++.+++||+||||+.. +..+.+.|++.||..
T Consensus 632 mse~~~~~~~~~l~g~~~gyvg~~~~--g~L~~~v~~~p~svvllDEieka--------------~~~v~~~Llq~ld~g 695 (852)
T TIGR03345 632 MSEFQEAHTVSRLKGSPPGYVGYGEG--GVLTEAVRRKPYSVVLLDEVEKA--------------HPDVLELFYQVFDKG 695 (852)
T ss_pred HHHhhhhhhhccccCCCCCccccccc--chHHHHHHhCCCcEEEEechhhc--------------CHHHHHHHHHHhhcc
Confidence 887642 25554332 23456667788899999999863 456788888888754
Q ss_pred C---------CCCcEEEEecCCCCC-----------------------------CCCccCCCCCccceEEeecCCCHHHH
Q 004267 616 S---------AKKTVFIIGATNRPD-----------------------------IIDPALLRPGRLDQLIYIPLPDEDSR 657 (764)
Q Consensus 616 ~---------~~~~v~vi~aTn~~~-----------------------------~ld~allrpgRf~~~i~~~~p~~~~r 657 (764)
. +.++.+||+|||... .+.|+|+. |++ +|.|.+++.++.
T Consensus 696 ~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs~e~l 772 (852)
T TIGR03345 696 VMEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLPLDDDVL 772 (852)
T ss_pred eeecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCCCCHHHH
Confidence 2 235789999999521 14466665 998 899999999999
Q ss_pred HHHHHHHhccC--------CCCCccc---HHHHHHHCC--CCCHHHHHHHHHHHHHHHHHHHH
Q 004267 658 HQIFKACLRKS--------PVSKDVD---LRALAKYTQ--GFSGADITEICQRACKYAIRENI 707 (764)
Q Consensus 658 ~~Il~~~~~~~--------~~~~~~~---l~~la~~~~--g~sg~di~~~~~~a~~~a~~~~~ 707 (764)
.+|+...+... ++.-.++ ++.|++... .|-.+.++.+++.-...++.+.+
T Consensus 773 ~~Iv~~~L~~l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~la~~~ 835 (852)
T TIGR03345 773 AAIVRLKLDRIARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPELSRQI 835 (852)
T ss_pred HHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 99998877441 3322222 456666543 35678888888887777776654
No 69
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.97 E-value=2.1e-29 Score=262.14 Aligned_cols=217 Identities=22% Similarity=0.300 Sum_probs=173.9
Q ss_pred Ccccc-cChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhhhhccc
Q 004267 206 GYDDV-GGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAG 284 (764)
Q Consensus 206 ~~~~i-~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~~g 284 (764)
+|+++ ||+--...-+..+....- ......+++.+|.+++||||||||||++|+++|++++..++.++++++.++|.|
T Consensus 113 ~f~~~~g~~~~~p~f~dk~~~hi~--kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vG 190 (413)
T PLN00020 113 SFDNLVGGYYIAPAFMDKVAVHIA--KNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAG 190 (413)
T ss_pred chhhhcCccccCHHHHHHHHHHHH--hhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCC
Confidence 45555 666544444433332111 112233688999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHh-----cCCeEEEEccccccCCCCCCCchHHHHHHH-HHHHHHhhcc------------cCCCeEE
Q 004267 285 ESESNLRKAFEEAEK-----NAPSIIFIDEIDSIAPKREKTHGEVERRIV-SQLLTLMDGL------------KSRAHVI 346 (764)
Q Consensus 285 ~~~~~l~~vf~~a~~-----~~p~il~iDEid~l~~~~~~~~~~~~~~v~-~~Ll~~ld~~------------~~~~~v~ 346 (764)
++++.++.+|+.|.. ..||||||||||+++++++.....+..+++ .+|+++||+. .....|+
T Consensus 191 EsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~ 270 (413)
T PLN00020 191 EPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVP 270 (413)
T ss_pred cHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCce
Confidence 999999999999975 469999999999999998766566655555 8999999863 2356799
Q ss_pred EEEecCCCCCCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCCCchhhhHHhhhcCC----CchHHHHHHHHHH
Q 004267 347 VIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHG----YVGADLAALCTEA 422 (764)
Q Consensus 347 vI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g----~~~~dl~~l~~~a 422 (764)
||+|||+|+.|||+|+|+|||++.+ +.|+.++|.+||+.+++...+. ..++..++..++| |.|+--.....++
T Consensus 271 VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar~yd~~ 347 (413)
T PLN00020 271 IIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRARVYDDE 347 (413)
T ss_pred EEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHHHHHHH
Confidence 9999999999999999999999964 6899999999999999988776 4788888888877 5666556655555
Q ss_pred HHHHH
Q 004267 423 ALQCI 427 (764)
Q Consensus 423 ~~~~~ 427 (764)
..+.+
T Consensus 348 v~~~i 352 (413)
T PLN00020 348 VRKWI 352 (413)
T ss_pred HHHHH
Confidence 54433
No 70
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.97 E-value=2.8e-28 Score=291.85 Aligned_cols=452 Identities=23% Similarity=0.373 Sum_probs=288.4
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCeEEEEec
Q 004267 206 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFCING 275 (764)
Q Consensus 206 ~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l----------~~~~i~v~~ 275 (764)
.++++.|-+++++++.+++.. ....+++|+||||||||++++.+|..+ +..++.++.
T Consensus 177 ~~~~~igr~~ei~~~~~~L~r-------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~ 243 (821)
T CHL00095 177 NLDPVIGREKEIERVIQILGR-------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDI 243 (821)
T ss_pred CCCCCCCcHHHHHHHHHHHcc-------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeH
Confidence 467799999999998888754 235689999999999999999999886 367889998
Q ss_pred hhhh--hhccchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCC
Q 004267 276 PEIM--SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNR 353 (764)
Q Consensus 276 ~~l~--~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~ 353 (764)
..+. .+|.|+.+.+++.+|+.+....++||||||+|.+...++... .+ . +.+++.....++.+.+||+|+.
T Consensus 244 ~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g-~~--~----~a~lLkp~l~rg~l~~IgaTt~ 316 (821)
T CHL00095 244 GLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEG-AI--D----AANILKPALARGELQCIGATTL 316 (821)
T ss_pred HHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCC-cc--c----HHHHhHHHHhCCCcEEEEeCCH
Confidence 8876 478899999999999999888889999999999987654322 22 1 1222333335678999999997
Q ss_pred CC-----CCChhhhccCCcceEEEecCCChHHHHHHHHHHhc------CCCCCCchhhhHHhhhcCCCchH-----HHHH
Q 004267 354 PN-----SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTK------NMKLSDDVDLERIAKDTHGYVGA-----DLAA 417 (764)
Q Consensus 354 ~~-----~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~------~~~l~~~~~l~~la~~t~g~~~~-----dl~~ 417 (764)
.+ ..|+++.+ ||. .+.++.|+.++...|++.... +..+ .+..+..++..+++|.+. ....
T Consensus 317 ~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i-~deal~~i~~ls~~yi~~r~lPdkaid 392 (821)
T CHL00095 317 DEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSI-SDKALEAAAKLSDQYIADRFLPDKAID 392 (821)
T ss_pred HHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhhccCccccCchHHHH
Confidence 64 46899998 885 578999999998888875432 2222 344577777778777653 2334
Q ss_pred HHHHHHHHH-HHhh-cc-ccc-c---------c------cchhh------H---HHhh------------------hhcc
Q 004267 418 LCTEAALQC-IREK-MD-VID-L---------E------DETID------A---EILN------------------SMAV 451 (764)
Q Consensus 418 l~~~a~~~~-~~~~-~~-~~~-~---------~------~~~~~------~---~~~~------------------~~~~ 451 (764)
++.+|+... +... .+ .+. + + ..... . +... ...+
T Consensus 393 lld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 472 (821)
T CHL00095 393 LLDEAGSRVRLINSRLPPAARELDKELREILKDKDEAIREQDFETAKQLRDREMEVRAQIAAIIQSKKTEEEKRLEVPVV 472 (821)
T ss_pred HHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCcc
Confidence 445444321 1100 00 000 0 0 00000 0 0000 0112
Q ss_pred cchhhhccccccC--CCC-cce----eeeeccCccccccccchhhhhcccceeeccCCChhhhhhccC----CCCcceee
Q 004267 452 SNEHFQTALGTSN--PSA-LRE----TVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGM----SPSKGVLF 520 (764)
Q Consensus 452 ~~~~~~~al~~~~--ps~-~~~----~~~~~~~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~----~~~~gill 520 (764)
+.+++...+.... |.. +.. ........--..|.|++.+.+.+...+... +.|+ +|...+||
T Consensus 473 ~~~~i~~~~~~~tgip~~~~~~~~~~~l~~l~~~L~~~v~GQ~~ai~~l~~~i~~~--------~~gl~~~~~p~~~~lf 544 (821)
T CHL00095 473 TEEDIAEIVSAWTGIPVNKLTKSESEKLLHMEETLHKRIIGQDEAVVAVSKAIRRA--------RVGLKNPNRPIASFLF 544 (821)
T ss_pred CHHHHHHHHHHHHCCCchhhchhHHHHHHHHHHHhcCcCcChHHHHHHHHHHHHHH--------hhcccCCCCCceEEEE
Confidence 2222222111110 000 000 000000111234667777777666554321 1122 22234899
Q ss_pred eCCCCCChhHHHHHHHHHh---CCeeEEEecccchh-----c-------ccCcchHHHHHHHHHHhhCCCeEEEEecccc
Q 004267 521 YGPPGCGKTLLAKAIANEC---QANFISVKGPELLT-----M-------WFGESEANVREIFDKARQSAPCVLFFDELDS 585 (764)
Q Consensus 521 ~GppGtGKT~lak~lA~~~---~~~~i~v~~~~l~~-----~-------~~g~se~~i~~~f~~a~~~~p~iifiDEid~ 585 (764)
+||+|||||+||+++|..+ ..+++.++++++.. + |+|..+ .+.+.+..+..+.+|++|||||.
T Consensus 545 ~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~--~~~l~~~~~~~p~~VvllDeiek 622 (821)
T CHL00095 545 SGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNE--GGQLTEAVRKKPYTVVLFDEIEK 622 (821)
T ss_pred ECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCc--cchHHHHHHhCCCeEEEECChhh
Confidence 9999999999999999986 46799999887632 2 333322 24567777788889999999997
Q ss_pred hhhccCCCCCCCCcchHHHHHHHHHhhcCCC---------CCCcEEEEecCCCCCC------------------------
Q 004267 586 IATQRGSSVGDAGGAADRVLNQLLTEMDGMS---------AKKTVFIIGATNRPDI------------------------ 632 (764)
Q Consensus 586 l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~---------~~~~v~vi~aTn~~~~------------------------ 632 (764)
. ...+.+.||+.||... +.++.++|+|||....
T Consensus 623 a--------------~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~ 688 (821)
T CHL00095 623 A--------------HPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYK 688 (821)
T ss_pred C--------------CHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHH
Confidence 4 4568888999888632 2468899999986321
Q ss_pred -------------CCccCCCCCccceEEeecCCCHHHHHHHHHHHhccC-------CCCCccc---HHHHHHH--CCCCC
Q 004267 633 -------------IDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKS-------PVSKDVD---LRALAKY--TQGFS 687 (764)
Q Consensus 633 -------------ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~-------~~~~~~~---l~~la~~--~~g~s 687 (764)
+.|.|+. |+|.+|.|.+.+.++..+|++..+.+. ++.-.++ .+.|++. ...|-
T Consensus 689 ~~~~~~~~~~~~~f~pefln--Rid~ii~F~pL~~~~l~~Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~G 766 (821)
T CHL00095 689 RLSNLVNEELKQFFRPEFLN--RLDEIIVFRQLTKNDVWEIAEIMLKNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYG 766 (821)
T ss_pred HHHHHHHHHHHHhcCHHHhc--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCCC
Confidence 1244554 999999999999999999998777532 2222222 4456654 23455
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004267 688 GADITEICQRACKYAIRENI 707 (764)
Q Consensus 688 g~di~~~~~~a~~~a~~~~~ 707 (764)
++.|+.+++.-...++.+.+
T Consensus 767 AR~l~r~i~~~i~~~l~~~~ 786 (821)
T CHL00095 767 ARPLRRAIMRLLEDPLAEEV 786 (821)
T ss_pred hhhHHHHHHHHHHHHHHHHH
Confidence 67888888777776666554
No 71
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.96 E-value=3.7e-29 Score=290.75 Aligned_cols=226 Identities=44% Similarity=0.758 Sum_probs=207.6
Q ss_pred CCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhhhhcc
Q 004267 204 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLA 283 (764)
Q Consensus 204 ~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~~ 283 (764)
...|+|++|++..++.+.+++.+ +..|..+..++...+++++|+||||||||+++++++++++.+|+.+++.++...+.
T Consensus 148 ~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~ 226 (644)
T PRK10733 148 KTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFV 226 (644)
T ss_pred hCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhh
Confidence 34688999999999999999987 67788888888888999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCC---chHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCChh
Q 004267 284 GESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT---HGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPA 360 (764)
Q Consensus 284 g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld~a 360 (764)
+.....++.+|+.+....|+||||||+|.++.+++.. ......+++++|+..|+++..+..++||++||+|+.+|++
T Consensus 227 g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~A 306 (644)
T PRK10733 227 GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPA 306 (644)
T ss_pred cccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHH
Confidence 9999999999999999999999999999999877542 2233456788999999999888899999999999999999
Q ss_pred hhccCCcceEEEecCCChHHHHHHHHHHhcCCCCCCchhhhHHhhhcCCCchHHHHHHHHHHHHHHHHhh
Q 004267 361 LRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREK 430 (764)
Q Consensus 361 l~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~ 430 (764)
+.|++||++.+.++.|+.++|.+||+.|+++.++..+.++..+++.|.||+|+|+.++|++|+..+.++.
T Consensus 307 l~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~ 376 (644)
T PRK10733 307 LLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGN 376 (644)
T ss_pred HhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999889999999999999999999999999999887654
No 72
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.96 E-value=3.1e-29 Score=299.97 Aligned_cols=201 Identities=21% Similarity=0.286 Sum_probs=169.6
Q ss_pred cccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhhhhc----------cc------------
Q 004267 227 PLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKL----------AG------------ 284 (764)
Q Consensus 227 ~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~----------~g------------ 284 (764)
|.+.+.....+|+.+++||||+||||||||.||+++|++.+.+|+.+++++++..+ .|
T Consensus 1615 ~s~~kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~ 1694 (2281)
T CHL00206 1615 PSHGKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDID 1694 (2281)
T ss_pred cccCcCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccc
Confidence 33445566789999999999999999999999999999999999999999998654 11
Q ss_pred -------------------hh--HHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhccc---
Q 004267 285 -------------------ES--ESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK--- 340 (764)
Q Consensus 285 -------------------~~--~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~--- 340 (764)
.. ..+++.+|+.|+..+||||||||||+++.+.. ....+.+|+..|++..
T Consensus 1695 ~~~~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds------~~ltL~qLLneLDg~~~~~ 1768 (2281)
T CHL00206 1695 RDLDTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNES------NYLSLGLLVNSLSRDCERC 1768 (2281)
T ss_pred cccchhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCcc------ceehHHHHHHHhccccccC
Confidence 12 23489999999999999999999999987621 1123688999998763
Q ss_pred CCCeEEEEEecCCCCCCChhhhccCCcceEEEecCCChHHHHHHHHHH--hcCCCCCCc-hhhhHHhhhcCCCchHHHHH
Q 004267 341 SRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIH--TKNMKLSDD-VDLERIAKDTHGYVGADLAA 417 (764)
Q Consensus 341 ~~~~v~vI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~--~~~~~l~~~-~~l~~la~~t~g~~~~dl~~ 417 (764)
...+|+||||||+|+.+||||.||||||+.|.++.|+..+|.+++..+ ++++.+..+ +++..+|+.|.||+|+|+++
T Consensus 1769 s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLan 1848 (2281)
T CHL00206 1769 STRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVA 1848 (2281)
T ss_pred CCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHH
Confidence 345899999999999999999999999999999999999999988754 556666543 57999999999999999999
Q ss_pred HHHHHHHHHHHhhccc
Q 004267 418 LCTEAALQCIREKMDV 433 (764)
Q Consensus 418 l~~~a~~~~~~~~~~~ 433 (764)
+|.||++.++++....
T Consensus 1849 LvNEAaliAirq~ks~ 1864 (2281)
T CHL00206 1849 LTNEALSISITQKKSI 1864 (2281)
T ss_pred HHHHHHHHHHHcCCCc
Confidence 9999999998876443
No 73
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.96 E-value=5.9e-27 Score=281.09 Aligned_cols=453 Identities=22% Similarity=0.363 Sum_probs=284.2
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCeEEEEec
Q 004267 206 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFCING 275 (764)
Q Consensus 206 ~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l----------~~~~i~v~~ 275 (764)
.++.+.|.++.+.++.+.+.. ....+++|+||||||||++++.+|..+ +.+++.++.
T Consensus 171 ~~~~~igr~~ei~~~~~~l~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~ 237 (852)
T TIGR03346 171 KLDPVIGRDEEIRRTIQVLSR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDM 237 (852)
T ss_pred CCCcCCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeH
Confidence 567799999987777766643 234678999999999999999999886 556778877
Q ss_pred hhhh--hhccchhHHHHHHHHHHHHh-cCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecC
Q 004267 276 PEIM--SKLAGESESNLRKAFEEAEK-NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATN 352 (764)
Q Consensus 276 ~~l~--~~~~g~~~~~l~~vf~~a~~-~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn 352 (764)
..+. .+|.|+.+.+++.+|..+.. ..+.||||||+|.+...+... +..+ . .+++.....++.+.+||+|+
T Consensus 238 ~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~-~~~d--~----~~~Lk~~l~~g~i~~IgaTt 310 (852)
T TIGR03346 238 GALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAE-GAMD--A----GNMLKPALARGELHCIGATT 310 (852)
T ss_pred HHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCc-chhH--H----HHHhchhhhcCceEEEEeCc
Confidence 6665 46889999999999999865 458999999999998654322 2111 1 22333344567899999999
Q ss_pred CCC-----CCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCC-----CchhhhHHhhhcCCCchH-----HHHH
Q 004267 353 RPN-----SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-----DDVDLERIAKDTHGYVGA-----DLAA 417 (764)
Q Consensus 353 ~~~-----~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-----~~~~l~~la~~t~g~~~~-----dl~~ 417 (764)
..+ ..|+++.| ||. .|.++.|+.+++..||+.+..++... .+..+...+..+++|... ....
T Consensus 311 ~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPdkAid 387 (852)
T TIGR03346 311 LDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDKAID 387 (852)
T ss_pred HHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCchHHHH
Confidence 763 47999999 995 58999999999999999876665543 234566777777777653 2333
Q ss_pred HHHHHHHHHHHh-------------hcccc-------ccccc-----h---hhHH------Hhhhh--------------
Q 004267 418 LCTEAALQCIRE-------------KMDVI-------DLEDE-----T---IDAE------ILNSM-------------- 449 (764)
Q Consensus 418 l~~~a~~~~~~~-------------~~~~~-------~~~~~-----~---~~~~------~~~~~-------------- 449 (764)
++.+|+...--. ....+ ..... . .... .....
T Consensus 388 lld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (852)
T TIGR03346 388 LIDEAAARIRMEIDSKPEELDELDRRIIQLEIEREALKKEKDEASKERLEDLEKELAELEEEYADLEEQWKAEKAAIQGI 467 (852)
T ss_pred HHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444443221100 00000 00000 0 0000 00000
Q ss_pred -----------------------------------------------------------cccchhhhcccccc--CCCC-
Q 004267 450 -----------------------------------------------------------AVSNEHFQTALGTS--NPSA- 467 (764)
Q Consensus 450 -----------------------------------------------------------~~~~~~~~~al~~~--~ps~- 467 (764)
.++.+++...+... -|..
T Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~i~~v~~~~tgip~~~ 547 (852)
T TIGR03346 468 QQIKEEIEQVRLELEQAEREGDLAKAAELQYGKLPELEKRLQAAEAKLGEETKPRLLREEVTAEEIAEVVSRWTGIPVSK 547 (852)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcchHHHHHHHHHHHHHhhhccccccccCCcCHHHHHHHHHHhcCCCccc
Confidence 00000000000000 0000
Q ss_pred cc----eeeeeccCccccccccchhhhhcccceeeccCCChhhhhhccC----CCCcceeeeCCCCCChhHHHHHHHHHh
Q 004267 468 LR----ETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGM----SPSKGVLFYGPPGCGKTLLAKAIANEC 539 (764)
Q Consensus 468 ~~----~~~~~~~~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~----~~~~gill~GppGtGKT~lak~lA~~~ 539 (764)
+. +........-...+.|++.+.+.+.+.+... ..|+ +|...+||+||||||||++|+++|..+
T Consensus 548 ~~~~e~~~l~~l~~~l~~~v~GQ~~av~~v~~~i~~~--------~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l 619 (852)
T TIGR03346 548 MLEGEREKLLHMEEVLHERVVGQDEAVEAVSDAIRRS--------RAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFL 619 (852)
T ss_pred ccHHHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHH--------hccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 00 0000000011234556666655555443321 1122 233459999999999999999999976
Q ss_pred ---CCeeEEEecccchh-----c-------ccCcchHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHH
Q 004267 540 ---QANFISVKGPELLT-----M-------WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRV 604 (764)
Q Consensus 540 ---~~~~i~v~~~~l~~-----~-------~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~ 604 (764)
+.+++.++++++.. + |+|..+ -+.+....+..+.+|+|||||+.+ ...+
T Consensus 620 ~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~--~g~l~~~v~~~p~~vlllDeieka--------------~~~v 683 (852)
T TIGR03346 620 FDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEE--GGQLTEAVRRKPYSVVLFDEVEKA--------------HPDV 683 (852)
T ss_pred cCCCCcEEEEechhhcccchHHHhcCCCCCccCccc--ccHHHHHHHcCCCcEEEEeccccC--------------CHHH
Confidence 46899999887632 2 233221 234555566677789999999874 3567
Q ss_pred HHHHHHhhcCCC---------CCCcEEEEecCCCCC-------------------------CCCccCCCCCccceEEeec
Q 004267 605 LNQLLTEMDGMS---------AKKTVFIIGATNRPD-------------------------IIDPALLRPGRLDQLIYIP 650 (764)
Q Consensus 605 ~~~lL~~ld~~~---------~~~~v~vi~aTn~~~-------------------------~ld~allrpgRf~~~i~~~ 650 (764)
.+.||+.|+... +.++.+||+|||... .+.|.|+. |+|.++.|.
T Consensus 684 ~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~ 761 (852)
T TIGR03346 684 FNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFH 761 (852)
T ss_pred HHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecC
Confidence 888888886532 235788999999832 13355665 999999999
Q ss_pred CCCHHHHHHHHHHHhcc-------CCCCCcc---cHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHHHH
Q 004267 651 LPDEDSRHQIFKACLRK-------SPVSKDV---DLRALAKYT--QGFSGADITEICQRACKYAIRENI 707 (764)
Q Consensus 651 ~p~~~~r~~Il~~~~~~-------~~~~~~~---~l~~la~~~--~g~sg~di~~~~~~a~~~a~~~~~ 707 (764)
+++.+...+|+...+.. .++...+ -++.|++.. ..+..+.|+++++......+.+.+
T Consensus 762 PL~~e~l~~I~~l~L~~l~~~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l~~~~ 830 (852)
T TIGR03346 762 PLGREQIARIVEIQLGRLRKRLAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPLAKKI 830 (852)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHH
Confidence 99999999999877742 1222122 245666652 357788999999998888877764
No 74
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.96 E-value=1.8e-27 Score=284.13 Aligned_cols=454 Identities=20% Similarity=0.348 Sum_probs=270.7
Q ss_pred CCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCeEEEEe
Q 004267 205 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFCIN 274 (764)
Q Consensus 205 ~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l----------~~~~i~v~ 274 (764)
=.++++.|.++.+.++.+++.- ....+++|+||||||||++++.+|..+ +.+++.++
T Consensus 175 ~~l~~vigr~~ei~~~i~iL~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~ 241 (857)
T PRK10865 175 GKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 241 (857)
T ss_pred CCCCcCCCCHHHHHHHHHHHhc-------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEe
Confidence 3567899999987777766654 234579999999999999999999987 56788887
Q ss_pred chhhh--hhccchhHHHHHHHHHHHHh-cCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEec
Q 004267 275 GPEIM--SKLAGESESNLRKAFEEAEK-NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGAT 351 (764)
Q Consensus 275 ~~~l~--~~~~g~~~~~l~~vf~~a~~-~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~at 351 (764)
...+. .++.|+.+.+++.+|+.... ..++||||||+|.+...+... +..+. .+++.....++.+.+||+|
T Consensus 242 l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~-~~~d~------~~~lkp~l~~g~l~~IgaT 314 (857)
T PRK10865 242 MGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKAD-GAMDA------GNMLKPALARGELHCVGAT 314 (857)
T ss_pred hhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCc-cchhH------HHHhcchhhcCCCeEEEcC
Confidence 77765 46889999999999998654 568999999999998775432 22221 1223344467899999999
Q ss_pred CCCC-----CCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCC-----CchhhhHHhhhcCCCchH-----HHH
Q 004267 352 NRPN-----SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-----DDVDLERIAKDTHGYVGA-----DLA 416 (764)
Q Consensus 352 n~~~-----~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-----~~~~l~~la~~t~g~~~~-----dl~ 416 (764)
+..+ .+|+++.| ||. .|.++.|+.+++..||+.+..++... .+..+...+..+++|... ...
T Consensus 315 t~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry~~~~~~pdkAi 391 (857)
T PRK10865 315 TLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAI 391 (857)
T ss_pred CCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhccccCCCCChHHH
Confidence 9876 47999999 996 58899999999999998776654332 233344444566665531 111
Q ss_pred HHHHHHHHH-------------HHHhhc-------cccccccc------------hhh---HHH-------------h--
Q 004267 417 ALCTEAALQ-------------CIREKM-------DVIDLEDE------------TID---AEI-------------L-- 446 (764)
Q Consensus 417 ~l~~~a~~~-------------~~~~~~-------~~~~~~~~------------~~~---~~~-------------~-- 446 (764)
.++..++.. .+.+.. .....+.. .+. .+. .
T Consensus 392 ~LiD~aaa~~rl~~~~kp~~L~rLer~l~~L~~E~e~l~~e~~~~~~~~~~~l~~~l~~lq~e~~~L~eq~k~~k~el~~ 471 (857)
T PRK10865 392 DLIDEAASSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSDKERQYSELEEEWKAEKASLSG 471 (857)
T ss_pred HHHHHHhcccccccccChHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 122211100 000000 00000000 000 000 0
Q ss_pred --------hhhc--c----cchhh--------------hcccc---------------ccCCCCcceeee---ecc----
Q 004267 447 --------NSMA--V----SNEHF--------------QTALG---------------TSNPSALRETVV---EVP---- 476 (764)
Q Consensus 447 --------~~~~--~----~~~~~--------------~~al~---------------~~~ps~~~~~~~---~~~---- 476 (764)
.... + ...++ ...+. .+.+.....++. .+|
T Consensus 472 ~~~~~~ele~l~~kie~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~vv~~~tgip~~~~ 551 (857)
T PRK10865 472 TQTIKAELEQAKIAIEQARRVGDLARMSELQYGKIPELEKQLAAATQLEGKTMRLLRNKVTDAEIAEVLARWTGIPVSRM 551 (857)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhhhHHHHHHHHHHHhhhccccccccCccCHHHHHHHHHHHHCCCchhh
Confidence 0000 0 00000 00000 000000000000 000
Q ss_pred ------------CccccccccchhhhhcccceeeccCCChhhhhhccCC----CCcceeeeCCCCCChhHHHHHHHHHh-
Q 004267 477 ------------NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMS----PSKGVLFYGPPGCGKTLLAKAIANEC- 539 (764)
Q Consensus 477 ------------~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~----~~~gill~GppGtGKT~lak~lA~~~- 539 (764)
..-...+.|++.+.+.+...+... ..|+. |...++|+||||||||++|+++|..+
T Consensus 552 ~~~~~~~l~~l~~~l~~~viGQ~~ai~~l~~~i~~~--------~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~ 623 (857)
T PRK10865 552 LESEREKLLRMEQELHHRVIGQNEAVEAVSNAIRRS--------RAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMF 623 (857)
T ss_pred hhhHHHHHHHHHHHhCCeEeCCHHHHHHHHHHHHHH--------HhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhh
Confidence 011223445554444444333211 11222 22348999999999999999999976
Q ss_pred --CCeeEEEecccchhc------------ccCcchHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHH
Q 004267 540 --QANFISVKGPELLTM------------WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVL 605 (764)
Q Consensus 540 --~~~~i~v~~~~l~~~------------~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~ 605 (764)
+.+|+.++++++... |+|..+ -+.+....+..+.++|||||++.+ ...+.
T Consensus 624 ~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~--~g~l~~~v~~~p~~vLllDEieka--------------~~~v~ 687 (857)
T PRK10865 624 DSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEE--GGYLTEAVRRRPYSVILLDEVEKA--------------HPDVF 687 (857)
T ss_pred cCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccch--hHHHHHHHHhCCCCeEEEeehhhC--------------CHHHH
Confidence 457899998876431 222221 122334445556689999999874 24567
Q ss_pred HHHHHhhcCCC---------CCCcEEEEecCCCC-------------------------CCCCccCCCCCccceEEeecC
Q 004267 606 NQLLTEMDGMS---------AKKTVFIIGATNRP-------------------------DIIDPALLRPGRLDQLIYIPL 651 (764)
Q Consensus 606 ~~lL~~ld~~~---------~~~~v~vi~aTn~~-------------------------~~ld~allrpgRf~~~i~~~~ 651 (764)
+.|++.|+... +.++.+||+|||.. ..+.|+|+. |+|.++.|.+
T Consensus 688 ~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iivF~P 765 (857)
T PRK10865 688 NILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVVFHP 765 (857)
T ss_pred HHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeEecCC
Confidence 78888776431 23567899999973 124467776 9999999999
Q ss_pred CCHHHHHHHHHHHhccC-------CCCCccc---HHHHHHHC--CCCCHHHHHHHHHHHHHHHHHHHH
Q 004267 652 PDEDSRHQIFKACLRKS-------PVSKDVD---LRALAKYT--QGFSGADITEICQRACKYAIRENI 707 (764)
Q Consensus 652 p~~~~r~~Il~~~~~~~-------~~~~~~~---l~~la~~~--~g~sg~di~~~~~~a~~~a~~~~~ 707 (764)
++.+....|++.++.+. ++.-.++ ++.|+... ..|-.+.|+.+++.-....+.+.+
T Consensus 766 L~~edl~~Iv~~~L~~l~~rl~~~gi~l~is~~al~~L~~~gy~~~~GARpL~r~I~~~i~~~la~~i 833 (857)
T PRK10865 766 LGEQHIASIAQIQLQRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQI 833 (857)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCCcCcCCHHHHHHHHHcCCCccCChHHHHHHHHHHHHHHHHHHH
Confidence 99999999998877542 2222233 34444432 223467888888877777666654
No 75
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=5.5e-27 Score=266.89 Aligned_cols=453 Identities=22% Similarity=0.354 Sum_probs=292.3
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCeEEEEec
Q 004267 206 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFCING 275 (764)
Q Consensus 206 ~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l----------~~~~i~v~~ 275 (764)
.++.+.|-+++++++.+++.-. ..++-+|+|+||+|||.++..+|..+ +..++.++-
T Consensus 168 klDPvIGRd~EI~r~iqIL~RR-------------~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~ 234 (786)
T COG0542 168 KLDPVIGRDEEIRRTIQILSRR-------------TKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDL 234 (786)
T ss_pred CCCCCcChHHHHHHHHHHHhcc-------------CCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecH
Confidence 4667899999988888877642 23467889999999999999999875 344666666
Q ss_pred hhhh--hhccchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCC
Q 004267 276 PEIM--SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNR 353 (764)
Q Consensus 276 ~~l~--~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~ 353 (764)
..+. .+|.|+.+++++.++++.....+.||||||+|.+.......++.++ ..+++...-.++.+-+||+|+.
T Consensus 235 g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~D------AaNiLKPaLARGeL~~IGATT~ 308 (786)
T COG0542 235 GSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMD------AANLLKPALARGELRCIGATTL 308 (786)
T ss_pred HHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccc------hhhhhHHHHhcCCeEEEEeccH
Confidence 6554 3789999999999999999888999999999999877653221222 2234445556788899998874
Q ss_pred CC-----CCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCCC-----chhhhHHhhhcCCCch-----HHHHHH
Q 004267 354 PN-----SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSD-----DVDLERIAKDTHGYVG-----ADLAAL 418 (764)
Q Consensus 354 ~~-----~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~-----~~~l~~la~~t~g~~~-----~dl~~l 418 (764)
-+ .-|+||.| || ..|.+..|+.++...||+....++.... |.-+...+..++.|.. .-...+
T Consensus 309 ~EYRk~iEKD~AL~R--RF-Q~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LPDKAIDL 385 (786)
T COG0542 309 DEYRKYIEKDAALER--RF-QKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLPDKAIDL 385 (786)
T ss_pred HHHHHHhhhchHHHh--cC-ceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCCCCchHHHH
Confidence 33 34899999 89 6689999999999999987655544332 2234555555544433 333445
Q ss_pred HHHHHHHHHHhhccccc------------cccchh-------hHHHhh---hh--------------cccchhhhccccc
Q 004267 419 CTEAALQCIREKMDVID------------LEDETI-------DAEILN---SM--------------AVSNEHFQTALGT 462 (764)
Q Consensus 419 ~~~a~~~~~~~~~~~~~------------~~~~~~-------~~~~~~---~~--------------~~~~~~~~~al~~ 462 (764)
+.+|+.+..-....... .+.... ...... .+ .++.+++......
T Consensus 386 iDeA~a~~~l~~~~p~~l~~~~~~~~~l~~e~~~~~~e~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Ia~vv~~ 465 (786)
T COG0542 386 LDEAGARVRLEIDKPEELDELERELAQLEIEKEALEREQDEKEKKLIDEIIKLKEGRIPELEKELEAEVDEDDIAEVVAR 465 (786)
T ss_pred HHHHHHHHHhcccCCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHHHHHhhccCHHHHHHHHHH
Confidence 55554332111000000 000000 000000 00 0122222222211
Q ss_pred cC--CCC-c----ceeeeeccCccccccccchhhhhcccceeeccCCChhhhhhccC----CCCcceeeeCCCCCChhHH
Q 004267 463 SN--PSA-L----RETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGM----SPSKGVLFYGPPGCGKTLL 531 (764)
Q Consensus 463 ~~--ps~-~----~~~~~~~~~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~----~~~~gill~GppGtGKT~l 531 (764)
.. |.. + ++.....+..--..|.|++++.+.+.+.+.. .+.|+ +|-..+||.||+|+|||.|
T Consensus 466 ~TgIPv~~l~~~e~~kll~le~~L~~rViGQd~AV~avs~aIrr--------aRaGL~dp~rPigsFlF~GPTGVGKTEL 537 (786)
T COG0542 466 WTGIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEAVSDAIRR--------ARAGLGDPNRPIGSFLFLGPTGVGKTEL 537 (786)
T ss_pred HHCCChhhhchhhHHHHHHHHHHHhcceeChHHHHHHHHHHHHH--------HhcCCCCCCCCceEEEeeCCCcccHHHH
Confidence 11 100 0 0111111222234577787777766665542 22233 3334599999999999999
Q ss_pred HHHHHHHhC---CeeEEEecccchh------------cccCcchHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCC
Q 004267 532 AKAIANECQ---ANFISVKGPELLT------------MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGD 596 (764)
Q Consensus 532 ak~lA~~~~---~~~i~v~~~~l~~------------~~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~ 596 (764)
||+||..+. ..++.+++|++.. .|||..+ =+.+-+..|..++|||+||||+.
T Consensus 538 AkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyee--GG~LTEaVRr~PySViLlDEIEK----------- 604 (786)
T COG0542 538 AKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEE--GGQLTEAVRRKPYSVILLDEIEK----------- 604 (786)
T ss_pred HHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceecc--ccchhHhhhcCCCeEEEechhhh-----------
Confidence 999999986 7899999999963 3566544 24677788889999999999987
Q ss_pred CCcchHHHHHHHHHhhcCCC---------CCCcEEEEecCCCC----------------------------CCCCccCCC
Q 004267 597 AGGAADRVLNQLLTEMDGMS---------AKKTVFIIGATNRP----------------------------DIIDPALLR 639 (764)
Q Consensus 597 ~~~~~~~~~~~lL~~ld~~~---------~~~~v~vi~aTn~~----------------------------~~ld~allr 639 (764)
++..|+|.||+.||... +.++.+||+|||-- ..+.|.++.
T Consensus 605 ---AHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN 681 (786)
T COG0542 605 ---AHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN 681 (786)
T ss_pred ---cCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh
Confidence 67899999999999753 24689999999841 023456665
Q ss_pred CCccceEEeecCCCHHHHHHHHHHHhccC-------CCCCccc---HHHHHHHC--CCCCHHHHHHHHHHHHHHHHHHH
Q 004267 640 PGRLDQLIYIPLPDEDSRHQIFKACLRKS-------PVSKDVD---LRALAKYT--QGFSGADITEICQRACKYAIREN 706 (764)
Q Consensus 640 pgRf~~~i~~~~p~~~~r~~Il~~~~~~~-------~~~~~~~---l~~la~~~--~g~sg~di~~~~~~a~~~a~~~~ 706 (764)
|+|.+|.|.+.+.+...+|+...+... .+.-.++ .+.|++.. ..|-++-|+.+++.-....+.+.
T Consensus 682 --Rid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~i~~~La~~ 758 (786)
T COG0542 682 --RIDEIIPFNPLSKEVLERIVDLQLNRLAKRLAERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQEIEDPLADE 758 (786)
T ss_pred --hcccEEeccCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHhccCCCcCchHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998877442 2221111 34455443 24556666666665555554444
No 76
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=5.1e-24 Score=214.35 Aligned_cols=187 Identities=30% Similarity=0.484 Sum_probs=148.8
Q ss_pred cccccccchhhhhcccceeeccCCChhhhhhc-cCCCCcceeeeCCCCCChhHHHHHHHHHh---------CCeeEEEec
Q 004267 479 SWEDIGGLENVKRELQETVQYPVEHPEKFEKF-GMSPSKGVLFYGPPGCGKTLLAKAIANEC---------QANFISVKG 548 (764)
Q Consensus 479 ~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~-~~~~~~gill~GppGtGKT~lak~lA~~~---------~~~~i~v~~ 548 (764)
-|+.+.--.++|+.|..++...+...+.-... -+...+-+||+||||||||+|+|++|..+ ....+.+++
T Consensus 140 lWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins 219 (423)
T KOG0744|consen 140 LWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS 219 (423)
T ss_pred hHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh
Confidence 37777777788887766544322211110111 12334559999999999999999999975 346789999
Q ss_pred ccchhcccCcchHHHHHHHHHHhhC-----CCeEEEEecccchhhccCCC-CCCCCcchHHHHHHHHHhhcCCCCCCcEE
Q 004267 549 PELLTMWFGESEANVREIFDKARQS-----APCVLFFDELDSIATQRGSS-VGDAGGAADRVLNQLLTEMDGMSAKKTVF 622 (764)
Q Consensus 549 ~~l~~~~~g~se~~i~~~f~~a~~~-----~p~iifiDEid~l~~~r~~~-~~~~~~~~~~~~~~lL~~ld~~~~~~~v~ 622 (764)
..+++||+++|.+.|.++|++.... ..-.++|||+++++..|... ++.....+-|++|.+|++||.+....+|+
T Consensus 220 hsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~Nvl 299 (423)
T KOG0744|consen 220 HSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVL 299 (423)
T ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEE
Confidence 9999999999999999999987643 22366799999999988432 22334456799999999999999999999
Q ss_pred EEecCCCCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhcc
Q 004267 623 IIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRK 667 (764)
Q Consensus 623 vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~ 667 (764)
+++|+|--+.||.|+.. |-|-+.|+++|+...+.+|++.++..
T Consensus 300 iL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieE 342 (423)
T KOG0744|consen 300 ILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEE 342 (423)
T ss_pred EEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHH
Confidence 99999999999999998 99999999999999999999998854
No 77
>CHL00181 cbbX CbbX; Provisional
Probab=99.89 E-value=5.6e-23 Score=216.20 Aligned_cols=237 Identities=22% Similarity=0.308 Sum_probs=176.6
Q ss_pred ccccccchhhhhcccceeeccCCChhhhhhccCCCCc---ceeeeCCCCCChhHHHHHHHHHh-------CCeeEEEecc
Q 004267 480 WEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSK---GVLFYGPPGCGKTLLAKAIANEC-------QANFISVKGP 549 (764)
Q Consensus 480 ~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~---gill~GppGtGKT~lak~lA~~~-------~~~~i~v~~~ 549 (764)
+.+++|++++|+++.+.+.+ +.........|+.++. +++|+||||||||++|+++|..+ ..+++.++.+
T Consensus 22 ~~~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~ 100 (287)
T CHL00181 22 DEELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRD 100 (287)
T ss_pred HHhcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHH
Confidence 45899999999999998876 3344555667765542 38999999999999999999975 2368999999
Q ss_pred cchhcccCcchHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCC
Q 004267 550 ELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNR 629 (764)
Q Consensus 550 ~l~~~~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~ 629 (764)
++.+.|+|+++..++.+|+.|.. +||||||++.+...++. ......+++.|+..|+.. ..+++||+|++.
T Consensus 101 ~l~~~~~g~~~~~~~~~l~~a~g---gVLfIDE~~~l~~~~~~-----~~~~~e~~~~L~~~me~~--~~~~~vI~ag~~ 170 (287)
T CHL00181 101 DLVGQYIGHTAPKTKEVLKKAMG---GVLFIDEAYYLYKPDNE-----RDYGSEAIEILLQVMENQ--RDDLVVIFAGYK 170 (287)
T ss_pred HHHHHHhccchHHHHHHHHHccC---CEEEEEccchhccCCCc-----cchHHHHHHHHHHHHhcC--CCCEEEEEeCCc
Confidence 99999999999889999998754 59999999998754321 235678899999999864 356778888764
Q ss_pred CC-----CCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCC--CCCcccHHHHHHH------CCCCC-HHHHHHHH
Q 004267 630 PD-----IIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSP--VSKDVDLRALAKY------TQGFS-GADITEIC 695 (764)
Q Consensus 630 ~~-----~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~--~~~~~~l~~la~~------~~g~s-g~di~~~~ 695 (764)
.. .++|++.+ ||+.+|+||+|+.+++.+|++.++++.. ++++ ....+... ...|. ++++++++
T Consensus 171 ~~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~-~~~~L~~~i~~~~~~~~~GNaR~vrn~v 247 (287)
T CHL00181 171 DRMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPE-AEKALLDYIKKRMEQPLFANARSVRNAL 247 (287)
T ss_pred HHHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChh-HHHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence 22 34699998 9999999999999999999999997654 3332 23333322 23454 89999999
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhcCCCccccccccccccccccHHHHHHH
Q 004267 696 QRACKYAIRENIEKDIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEES 744 (764)
Q Consensus 696 ~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a 744 (764)
..|......|......+ ....+....|+.+||.+.
T Consensus 248 e~~~~~~~~r~~~~~~~--------------~~~~~~l~~~~~~d~~~~ 282 (287)
T CHL00181 248 DRARMRQANRIFESGGR--------------VLTKADLVTIEAEDILKS 282 (287)
T ss_pred HHHHHHHHHHHHcCCCC--------------CCCHHHHhCCCHHHHhHH
Confidence 99988777776443110 011233557888888653
No 78
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.88 E-value=3.8e-22 Score=208.70 Aligned_cols=214 Identities=21% Similarity=0.299 Sum_probs=160.7
Q ss_pred ccccccchhhhhcccceeeccCCChhhhhhccCCCC---cceeeeCCCCCChhHHHHHHHHHh-------CCeeEEEecc
Q 004267 480 WEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPS---KGVLFYGPPGCGKTLLAKAIANEC-------QANFISVKGP 549 (764)
Q Consensus 480 ~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~---~gill~GppGtGKT~lak~lA~~~-------~~~~i~v~~~ 549 (764)
.++++|++.+|+.+++.+.|+... ......|+.++ .+++|+||||||||++|+++|+.+ ..+++.++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~-~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQIN-EKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 467999999999999988876443 23334465533 358999999999999999999864 3478899999
Q ss_pred cchhcccCcchHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCC
Q 004267 550 ELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNR 629 (764)
Q Consensus 550 ~l~~~~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~ 629 (764)
++.++|+|+++..++.+|+.|. .+||||||+|.|... . ........++.|++.|+.. ..++++|++++.
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~--~----~~~~~~~~i~~Ll~~~e~~--~~~~~vila~~~ 152 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARG--G----EKDFGKEAIDTLVKGMEDN--RNEFVLILAGYS 152 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccC--C----ccchHHHHHHHHHHHHhcc--CCCEEEEecCCc
Confidence 9999999999999999998875 369999999998631 1 1224567889999999865 344556665543
Q ss_pred CC-----CCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCCCccc-HHHHHHH---------CCCCCHHHHHHH
Q 004267 630 PD-----IIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVD-LRALAKY---------TQGFSGADITEI 694 (764)
Q Consensus 630 ~~-----~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~-l~~la~~---------~~g~sg~di~~~ 694 (764)
.+ .++|++.+ ||+..|+||+++.+++.+|++.+++.....-+.+ +..+++. ...-+++.+.++
T Consensus 153 ~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~ 230 (261)
T TIGR02881 153 DEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNI 230 (261)
T ss_pred chhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHH
Confidence 22 37889988 9999999999999999999999997665432222 3344322 123478899999
Q ss_pred HHHHHHHHHHHHH
Q 004267 695 CQRACKYAIRENI 707 (764)
Q Consensus 695 ~~~a~~~a~~~~~ 707 (764)
+..|......+.+
T Consensus 231 ~e~a~~~~~~r~~ 243 (261)
T TIGR02881 231 IEKAIRRQAVRLL 243 (261)
T ss_pred HHHHHHHHHHHHh
Confidence 9888877766654
No 79
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.87 E-value=3e-22 Score=211.00 Aligned_cols=237 Identities=20% Similarity=0.260 Sum_probs=177.2
Q ss_pred cccccchhhhhcccceeeccCCChhhhhhccCCC---CcceeeeCCCCCChhHHHHHHHHHhC-------CeeEEEeccc
Q 004267 481 EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSP---SKGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPE 550 (764)
Q Consensus 481 ~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~---~~gill~GppGtGKT~lak~lA~~~~-------~~~i~v~~~~ 550 (764)
.+++|++++|+++.+.+.+ ...++.+.+.|+.+ ..+++|+||||||||++|+++|..+. .+|+.+++++
T Consensus 22 ~~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~ 100 (284)
T TIGR02880 22 RELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDD 100 (284)
T ss_pred HhccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHH
Confidence 3689999999999998887 55666677778764 34799999999999999999998752 3799999999
Q ss_pred chhcccCcchHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCC-
Q 004267 551 LLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNR- 629 (764)
Q Consensus 551 l~~~~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~- 629 (764)
+.++|+|+++..++.+|+.|.. ++|||||++.+.+.++. .....++.+.|++.|+.. ..+++||+|++.
T Consensus 101 l~~~~~g~~~~~~~~~~~~a~~---gvL~iDEi~~L~~~~~~-----~~~~~~~~~~Ll~~le~~--~~~~~vI~a~~~~ 170 (284)
T TIGR02880 101 LVGQYIGHTAPKTKEILKRAMG---GVLFIDEAYYLYRPDNE-----RDYGQEAIEILLQVMENQ--RDDLVVILAGYKD 170 (284)
T ss_pred HhHhhcccchHHHHHHHHHccC---cEEEEechhhhccCCCc-----cchHHHHHHHHHHHHhcC--CCCEEEEEeCCcH
Confidence 9999999999999999998754 69999999998654321 235678889999999854 356778887764
Q ss_pred -CC---CCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCCCcc-cHHHHHHH-------CCCCCHHHHHHHHHH
Q 004267 630 -PD---IIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDV-DLRALAKY-------TQGFSGADITEICQR 697 (764)
Q Consensus 630 -~~---~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~-~l~~la~~-------~~g~sg~di~~~~~~ 697 (764)
++ .++|++.+ ||+..|+||+++.+++..|++.++++....-+. .+..++.+ ..--+++++++++..
T Consensus 171 ~~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~ 248 (284)
T TIGR02880 171 RMDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDR 248 (284)
T ss_pred HHHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHH
Confidence 33 35899999 999999999999999999999999875432222 23344433 122468999999999
Q ss_pred HHHHHHHHHHHHhHHHHhhhcCCCccccccccccccccccHHHHHHH
Q 004267 698 ACKYAIRENIEKDIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEES 744 (764)
Q Consensus 698 a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a 744 (764)
|......|...... .....+....|+.+|+.++
T Consensus 249 ~~~~~~~r~~~~~~--------------~~~~~~~~~~~~~~d~~~~ 281 (284)
T TIGR02880 249 ARLRQANRLFCDLD--------------RVLDKSDLETIDPEDLLAS 281 (284)
T ss_pred HHHHHHHHHhcCcC--------------CCCCHHHHhCCCHHHHhhc
Confidence 88776665532110 0001233557888888655
No 80
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.87 E-value=4.5e-22 Score=185.67 Aligned_cols=130 Identities=47% Similarity=0.794 Sum_probs=118.4
Q ss_pred eeeeCCCCCChhHHHHHHHHHhCCeeEEEecccchhcccCcchHHHHHHHHHHhhCC-CeEEEEecccchhhccCCCCCC
Q 004267 518 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSA-PCVLFFDELDSIATQRGSSVGD 596 (764)
Q Consensus 518 ill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~~-p~iifiDEid~l~~~r~~~~~~ 596 (764)
+||+||||||||++|+.+|..++.+++.++++++.+.+.+++++.++.+|+.++... |+|+||||+|.+.+... ..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~---~~ 77 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQ---PS 77 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCS---TS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhcccccc---cc
Confidence 689999999999999999999999999999999999999999999999999999888 99999999999999861 22
Q ss_pred CCcchHHHHHHHHHhhcCCCCC-CcEEEEecCCCCCCCCccCCCCCccceEEeecC
Q 004267 597 AGGAADRVLNQLLTEMDGMSAK-KTVFIIGATNRPDIIDPALLRPGRLDQLIYIPL 651 (764)
Q Consensus 597 ~~~~~~~~~~~lL~~ld~~~~~-~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~ 651 (764)
......+++++|+..|+..... .+++||+|||.++.++++++| +||+..|++|+
T Consensus 78 ~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 78 SSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp SSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred cccccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 3556788999999999998765 679999999999999999998 89999999984
No 81
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=5.6e-22 Score=210.40 Aligned_cols=222 Identities=21% Similarity=0.332 Sum_probs=170.3
Q ss_pred ccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccchhcccC
Q 004267 478 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFG 557 (764)
Q Consensus 478 v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~~~~~g 557 (764)
-+|+.++-..++|+.+.+-+....+..+-+++.|....+|.|||||||||||++..|+|+.++....-+.-++..
T Consensus 198 stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~----- 272 (457)
T KOG0743|consen 198 STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVK----- 272 (457)
T ss_pred CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeecccc-----
Confidence 557777777888999888888888899999999999999999999999999999999999999999888776642
Q ss_pred cchHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCC---CC-cchHHHHHHHHHhhcCCCCCC--cEEEEecCCCCC
Q 004267 558 ESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGD---AG-GAADRVLNQLLTEMDGMSAKK--TVFIIGATNRPD 631 (764)
Q Consensus 558 ~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~---~~-~~~~~~~~~lL~~ld~~~~~~--~v~vi~aTn~~~ 631 (764)
.... ++.+...+... +||+|.+||+-+..|+..... .. ....-.++-||+.+||+-+.. --+||+|||.++
T Consensus 273 ~n~d-Lr~LL~~t~~k--SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~E 349 (457)
T KOG0743|consen 273 LDSD-LRHLLLATPNK--SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKE 349 (457)
T ss_pred CcHH-HHHHHHhCCCC--cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChh
Confidence 2222 88888777655 699999999987655433221 11 122346889999999985433 678999999999
Q ss_pred CCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCC-CCCcccHHHHHHHCCCCCHHHHHHH-HHH--HHHHHHHHHH
Q 004267 632 IIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSP-VSKDVDLRALAKYTQGFSGADITEI-CQR--ACKYAIRENI 707 (764)
Q Consensus 632 ~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~-~~~~~~l~~la~~~~g~sg~di~~~-~~~--a~~~a~~~~~ 707 (764)
.|||||+||||+|.+||++.=+.++-+.+++.++.-.. -..-.+++.+...++ .|+||+... +.. .+..|+++.+
T Consensus 350 kLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~h~L~~eie~l~~~~~-~tPA~V~e~lm~~~~dad~~lk~Lv 428 (457)
T KOG0743|consen 350 KLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEEDHRLFDEIERLIEETE-VTPAQVAEELMKNKNDADVALKGLV 428 (457)
T ss_pred hcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCCcchhHHHHHHhhcCc-cCHHHHHHHHhhccccHHHHHHHHH
Confidence 99999999999999999999999999999999996532 111122334333333 799999753 332 4566666655
Q ss_pred H
Q 004267 708 E 708 (764)
Q Consensus 708 ~ 708 (764)
+
T Consensus 429 ~ 429 (457)
T KOG0743|consen 429 E 429 (457)
T ss_pred H
Confidence 4
No 82
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=2e-21 Score=200.69 Aligned_cols=180 Identities=29% Similarity=0.535 Sum_probs=145.6
Q ss_pred CCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccchhcccCcchHHHHHHHHHHhhCCC-eEEEEecccchhhccC
Q 004267 513 SPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAP-CVLFFDELDSIATQRG 591 (764)
Q Consensus 513 ~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~~p-~iifiDEid~l~~~r~ 591 (764)
.+.++++||||||||||+.|+-||..+|..+-...|.|+... -.+.-..|.++|+.|.++.. -++||||+|.++-.|.
T Consensus 382 apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPl-G~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRn 460 (630)
T KOG0742|consen 382 APFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPL-GAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERN 460 (630)
T ss_pred chhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcccc-chHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhc
Confidence 456779999999999999999999999999998988887531 12345679999999987654 4889999999999887
Q ss_pred CCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCC
Q 004267 592 SSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS 671 (764)
Q Consensus 592 ~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~ 671 (764)
.. .-+...+..+|.||-.- ...++.++++.+||+|..+|.|+-. |||.+|+||+|..++|.+++..|+.+.-+.
T Consensus 461 kt--ymSEaqRsaLNAlLfRT--GdqSrdivLvlAtNrpgdlDsAV~D--Ride~veFpLPGeEERfkll~lYlnkyi~~ 534 (630)
T KOG0742|consen 461 KT--YMSEAQRSALNALLFRT--GDQSRDIVLVLATNRPGDLDSAVND--RIDEVVEFPLPGEEERFKLLNLYLNKYILK 534 (630)
T ss_pred hh--hhcHHHHHHHHHHHHHh--cccccceEEEeccCCccchhHHHHh--hhhheeecCCCChHHHHHHHHHHHHHHhcC
Confidence 64 23456677888887442 3356788999999999999999987 999999999999999999999998764321
Q ss_pred C---------------------------cccHHHHHHHCCCCCHHHHHHHHHHHH
Q 004267 672 K---------------------------DVDLRALAKYTQGFSGADITEICQRAC 699 (764)
Q Consensus 672 ~---------------------------~~~l~~la~~~~g~sg~di~~~~~~a~ 699 (764)
. +.-+.+.|+.|+||||++|..++-.-.
T Consensus 535 ~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREiakLva~vQ 589 (630)
T KOG0742|consen 535 PATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREIAKLVASVQ 589 (630)
T ss_pred cCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 1 011567889999999999998875433
No 83
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.83 E-value=1.2e-19 Score=169.19 Aligned_cols=130 Identities=49% Similarity=0.831 Sum_probs=118.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhhhhccchhHHHHHHHHHHHHhcC-CeEEEEccccccCCCCCCCchH
Q 004267 245 ILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNA-PSIIFIDEIDSIAPKREKTHGE 323 (764)
Q Consensus 245 vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~-p~il~iDEid~l~~~~~~~~~~ 323 (764)
|||+||||||||++++.+|..++.+++.+++.++.+.+.++....+..+|+.+.... |+|+||||+|.+.++.......
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~~~~ 80 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPSSSS 80 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTSSSH
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccccccccc
Confidence 699999999999999999999999999999999998899999999999999999887 9999999999999888545667
Q ss_pred HHHHHHHHHHHHhhcccCC-CeEEEEEecCCCCCCChhhhccCCcceEEEecC
Q 004267 324 VERRIVSQLLTLMDGLKSR-AHVIVIGATNRPNSIDPALRRFGRFDREIDIGV 375 (764)
Q Consensus 324 ~~~~v~~~Ll~~ld~~~~~-~~v~vI~atn~~~~ld~al~r~~rf~~~i~i~~ 375 (764)
....+.++|+..++..... .++++|++||.++.+++.+.| +||+..++++.
T Consensus 81 ~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 81 FEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp HHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred ccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 7788999999999988765 579999999999999999998 89999998863
No 84
>CHL00181 cbbX CbbX; Provisional
Probab=99.79 E-value=4.9e-18 Score=178.78 Aligned_cols=212 Identities=17% Similarity=0.305 Sum_probs=159.7
Q ss_pred ccccChHHHHHHHHHHHHccccChhhhhhhCCCCC---ceEEEECCCCCCHHHHHHHHHHHhC-------CeEEEEechh
Q 004267 208 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPP---KGILLYGPPGSGKTLIARAVANETG-------AFFFCINGPE 277 (764)
Q Consensus 208 ~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~---~~vLL~GppGtGKTtLar~la~~l~-------~~~i~v~~~~ 277 (764)
.+++|+++++++|++++.+ +..+++..++|+.++ .+++|+||||||||++|+++|..+. .+++.++..+
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 23 EELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HhcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 4799999999999999987 445677777887543 4599999999999999999998752 3588999999
Q ss_pred hhhhccchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCC--
Q 004267 278 IMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPN-- 355 (764)
Q Consensus 278 l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~-- 355 (764)
+.+.+.|+++.+++.+|+.+. +++|||||++.+...++ ..+....+...|+..|+... .+++||++++...
T Consensus 102 l~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~~--~~~~~~e~~~~L~~~me~~~--~~~~vI~ag~~~~~~ 174 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDN--ERDYGSEAIEILLQVMENQR--DDLVVIFAGYKDRMD 174 (287)
T ss_pred HHHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCCC--ccchHHHHHHHHHHHHhcCC--CCEEEEEeCCcHHHH
Confidence 999999988888888888764 46999999999875432 22345677888999888643 4567777765321
Q ss_pred ---CCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCC--CCCchhhhHHhh----h--cCCCc-hHHHHHHHHHHH
Q 004267 356 ---SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMK--LSDDVDLERIAK----D--THGYV-GADLAALCTEAA 423 (764)
Q Consensus 356 ---~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~--l~~~~~l~~la~----~--t~g~~-~~dl~~l~~~a~ 423 (764)
.++|++++ ||+..+.++.++.+++.+|+..++.... +.++. ...+.. . ...|. ++.+.+++..+.
T Consensus 175 ~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~-~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~ 251 (287)
T CHL00181 175 KFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEA-EKALLDYIKKRMEQPLFANARSVRNALDRAR 251 (287)
T ss_pred HHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhH-HHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 34688988 9999999999999999999998876543 33332 222222 1 23455 788889888887
Q ss_pred HHHHHhh
Q 004267 424 LQCIREK 430 (764)
Q Consensus 424 ~~~~~~~ 430 (764)
.+...+.
T Consensus 252 ~~~~~r~ 258 (287)
T CHL00181 252 MRQANRI 258 (287)
T ss_pred HHHHHHH
Confidence 7655543
No 85
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.77 E-value=7.7e-18 Score=177.54 Aligned_cols=211 Identities=18% Similarity=0.292 Sum_probs=158.3
Q ss_pred cccChHHHHHHHHHHHHccccChhhhhhhCCCC---CceEEEECCCCCCHHHHHHHHHHHhC-------CeEEEEechhh
Q 004267 209 DVGGVRKQMAQIRELVELPLRHPQLFKSIGVKP---PKGILLYGPPGSGKTLIARAVANETG-------AFFFCINGPEI 278 (764)
Q Consensus 209 ~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~---~~~vLL~GppGtGKTtLar~la~~l~-------~~~i~v~~~~l 278 (764)
+++|+++++++|++++.+ +..++.+..+|+.+ +.+++|+||||||||++|+++|..+. .+++.++++++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 699999999999999988 66778888888764 45899999999999999999998763 36889999999
Q ss_pred hhhccchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCC--C-
Q 004267 279 MSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRP--N- 355 (764)
Q Consensus 279 ~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~--~- 355 (764)
.+.+.|+++..++.+|+.+. +++|||||++.+.+.+. .......+...|+..|+... .+++||++++.. +
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~---~gvL~iDEi~~L~~~~~--~~~~~~~~~~~Ll~~le~~~--~~~~vI~a~~~~~~~~ 174 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAM---GGVLFIDEAYYLYRPDN--ERDYGQEAIEILLQVMENQR--DDLVVILAGYKDRMDS 174 (284)
T ss_pred hHhhcccchHHHHHHHHHcc---CcEEEEechhhhccCCC--ccchHHHHHHHHHHHHhcCC--CCEEEEEeCCcHHHHH
Confidence 99999988888888888874 37999999999865432 22344567788888887543 467777776532 2
Q ss_pred --CCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCC-CchhhhHHhhhc------CCC-chHHHHHHHHHHHHH
Q 004267 356 --SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDT------HGY-VGADLAALCTEAALQ 425 (764)
Q Consensus 356 --~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t------~g~-~~~dl~~l~~~a~~~ 425 (764)
.++|++++ ||...|+++.++.+++.+|++.+++..... +...+..+.... +.+ .+..+.+++..+..+
T Consensus 175 ~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~~ 252 (284)
T TIGR02880 175 FFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARLR 252 (284)
T ss_pred HHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHH
Confidence 34789998 999999999999999999999887764322 222233333321 222 356777777777665
Q ss_pred HHHh
Q 004267 426 CIRE 429 (764)
Q Consensus 426 ~~~~ 429 (764)
...+
T Consensus 253 ~~~r 256 (284)
T TIGR02880 253 QANR 256 (284)
T ss_pred HHHH
Confidence 5443
No 86
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.76 E-value=3.9e-17 Score=170.88 Aligned_cols=212 Identities=19% Similarity=0.247 Sum_probs=147.9
Q ss_pred cccccChHHHHHHHHHHHHccccChhhhhhhCCC---CCceEEEECCCCCCHHHHHHHHHHHh-------CCeEEEEech
Q 004267 207 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVK---PPKGILLYGPPGSGKTLIARAVANET-------GAFFFCINGP 276 (764)
Q Consensus 207 ~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~---~~~~vLL~GppGtGKTtLar~la~~l-------~~~~i~v~~~ 276 (764)
+++++|++++|++|++++.++... ......|.. ...+++|+|||||||||+|+++|+.+ ...++.++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~-~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQIN-EKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 567999999999999998875433 222334543 33569999999999999999999875 2357888999
Q ss_pred hhhhhccchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCC--
Q 004267 277 EIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRP-- 354 (764)
Q Consensus 277 ~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~-- 354 (764)
++.+.+.|+....++.+|+.+. ++||||||+|.+.+... .......+..|+..|+... ..+++|+++...
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~~---~~~~~~~i~~Ll~~~e~~~--~~~~vila~~~~~~ 155 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGGE---KDFGKEAIDTLVKGMEDNR--NEFVLILAGYSDEM 155 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccCCc---cchHHHHHHHHHHHHhccC--CCEEEEecCCcchh
Confidence 9999999999999999998874 46999999999974321 1233456677888887653 345555444322
Q ss_pred ---CCCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCC-CchhhhHHhhhc--------C-CCchHHHHHHHHH
Q 004267 355 ---NSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDT--------H-GYVGADLAALCTE 421 (764)
Q Consensus 355 ---~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t--------~-g~~~~dl~~l~~~ 421 (764)
..++|++++ ||...+.++.++.+++.+|++.++...... ++..+..++... . .-.++.+.+++..
T Consensus 156 ~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e~ 233 (261)
T TIGR02881 156 DYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIEK 233 (261)
T ss_pred HHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHH
Confidence 236788887 898899999999999999999887654322 222234443221 1 1234556666666
Q ss_pred HHHHHHHh
Q 004267 422 AALQCIRE 429 (764)
Q Consensus 422 a~~~~~~~ 429 (764)
|..+...+
T Consensus 234 a~~~~~~r 241 (261)
T TIGR02881 234 AIRRQAVR 241 (261)
T ss_pred HHHHHHHH
Confidence 55544433
No 87
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.73 E-value=1.7e-17 Score=198.06 Aligned_cols=204 Identities=26% Similarity=0.373 Sum_probs=144.9
Q ss_pred cccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccch--------
Q 004267 481 EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-------- 552 (764)
Q Consensus 481 ~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~-------- 552 (764)
+++.|++.+++.+.+.+...... +-..+..++|+||||||||++|+++|+.++.+|+.++...+.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~-------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~ 392 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLR-------GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGH 392 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhh-------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCC
Confidence 45889999999988765543211 111234699999999999999999999999999998755432
Q ss_pred -hcccCcchHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcC-----C--------CCC
Q 004267 553 -TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDG-----M--------SAK 618 (764)
Q Consensus 553 -~~~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~-----~--------~~~ 618 (764)
..|+|.....+.+.|..+....| |+||||||.+.+.... + ..+.||+.||. + .+.
T Consensus 393 ~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~---~-------~~~aLl~~ld~~~~~~f~d~~~~~~~d~ 461 (775)
T TIGR00763 393 RRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRG---D-------PASALLEVLDPEQNNAFSDHYLDVPFDL 461 (775)
T ss_pred CCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCC---C-------HHHHHHHhcCHHhcCccccccCCceecc
Confidence 36888888889999998876666 8999999999753211 1 23556666652 1 123
Q ss_pred CcEEEEecCCCCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHh-----ccCCCC------CcccHHHHHH-HCCCC
Q 004267 619 KTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACL-----RKSPVS------KDVDLRALAK-YTQGF 686 (764)
Q Consensus 619 ~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~-----~~~~~~------~~~~l~~la~-~~~g~ 686 (764)
.++++|+|||.++.|++++++ ||+ +|+|+.|+.+++.+|++.++ +..++. .+..+..+++ ++..+
T Consensus 462 s~v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~ 538 (775)
T TIGR00763 462 SKVIFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREA 538 (775)
T ss_pred CCEEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhc
Confidence 578999999999999999998 996 88999999999999999876 222222 1223455554 33344
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q 004267 687 SGADITEICQRACKYAIRE 705 (764)
Q Consensus 687 sg~di~~~~~~a~~~a~~~ 705 (764)
..++|+..+...+..+.++
T Consensus 539 g~R~l~r~i~~~~~~~~~~ 557 (775)
T TIGR00763 539 GVRNLERQIEKICRKAAVK 557 (775)
T ss_pred CChHHHHHHHHHHHHHHHH
Confidence 5566666555555444443
No 88
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.73 E-value=2.8e-17 Score=161.71 Aligned_cols=188 Identities=26% Similarity=0.414 Sum_probs=124.9
Q ss_pred ccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccchhcccC
Q 004267 478 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFG 557 (764)
Q Consensus 478 v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~~~~~g 557 (764)
-+++|+.|+++++..++-.+...... -.+..+++||||||+||||||+.+|++++.+|..++++.+-
T Consensus 21 ~~L~efiGQ~~l~~~l~i~i~aa~~r--------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~----- 87 (233)
T PF05496_consen 21 KSLDEFIGQEHLKGNLKILIRAAKKR--------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIE----- 87 (233)
T ss_dssp SSCCCS-S-HHHHHHHHHHHHHHHCT--------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC-------
T ss_pred CCHHHccCcHHHHhhhHHHHHHHHhc--------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhh-----
Confidence 46899999999998876544321111 12345699999999999999999999999999999987542
Q ss_pred cchHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCC----------------CCCcE
Q 004267 558 ESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS----------------AKKTV 621 (764)
Q Consensus 558 ~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~----------------~~~~v 621 (764)
....+..++..... ..|+|+|||+++.. .+-..|+..|+... +..+.
T Consensus 88 -k~~dl~~il~~l~~--~~ILFIDEIHRlnk--------------~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~F 150 (233)
T PF05496_consen 88 -KAGDLAAILTNLKE--GDILFIDEIHRLNK--------------AQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPF 150 (233)
T ss_dssp -SCHHHHHHHHT--T--T-EEEECTCCC--H--------------HHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----
T ss_pred -hHHHHHHHHHhcCC--CcEEEEechhhccH--------------HHHHHHHHHhccCeEEEEeccccccceeeccCCCc
Confidence 23445555555543 46999999999743 34456677776541 12358
Q ss_pred EEEecCCCCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCCCccc-HHHHHHHCCCCCHHHHHHHHHHH
Q 004267 622 FIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVD-LRALAKYTQGFSGADITEICQRA 698 (764)
Q Consensus 622 ~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~-l~~la~~~~g~sg~di~~~~~~a 698 (764)
.+|+||++...|.+.|.. ||..+..+..++.++..+|++...+...+.-+.+ ..++|+++.| |++=..++++.+
T Consensus 151 TligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAnrll~rv 225 (233)
T PF05496_consen 151 TLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIANRLLRRV 225 (233)
T ss_dssp EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHHHHHHHH
T ss_pred eEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHH
Confidence 899999999999999988 9999999999999999999999888877664443 5677777765 777666666543
No 89
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.71 E-value=5.1e-17 Score=193.01 Aligned_cols=223 Identities=21% Similarity=0.268 Sum_probs=154.2
Q ss_pred cccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHh----------CCeeEEEec
Q 004267 479 SWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISVKG 548 (764)
Q Consensus 479 ~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~----------~~~~i~v~~ 548 (764)
.++++.|.++....+.+.+ ......+++|+||||||||++|+++|..+ +..++.++.
T Consensus 180 ~l~~~igr~~ei~~~~~~L-------------~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~ 246 (731)
T TIGR02639 180 KIDPLIGREDELERTIQVL-------------CRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDM 246 (731)
T ss_pred CCCcccCcHHHHHHHHHHH-------------hcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecH
Confidence 4566777776655443322 22334579999999999999999999986 677899998
Q ss_pred ccch--hcccCcchHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEec
Q 004267 549 PELL--TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGA 626 (764)
Q Consensus 549 ~~l~--~~~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~a 626 (764)
..+. .+|.|+.++.++.+|+.+....++||||||||.+.+.+..+.+ ...+-+.|+..|. .+.+.+|+|
T Consensus 247 ~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~-----~~~~~~~L~~~l~----~g~i~~Iga 317 (731)
T TIGR02639 247 GSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGG-----SMDASNLLKPALS----SGKLRCIGS 317 (731)
T ss_pred HHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCc-----cHHHHHHHHHHHh----CCCeEEEEe
Confidence 8887 5899999999999999998778899999999999876432211 1123344444443 457899999
Q ss_pred CCCCC-----CCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccC----CC-CCcccHHHHHHHCCCCCH-----HHH
Q 004267 627 TNRPD-----IIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKS----PV-SKDVDLRALAKYTQGFSG-----ADI 691 (764)
Q Consensus 627 Tn~~~-----~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~----~~-~~~~~l~~la~~~~g~sg-----~di 691 (764)
||..+ .+|+|+.| ||. .|+|+.|+.+++.+|++...... .+ -.+..+..++..+..|-+ ...
T Consensus 318 Tt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~ka 394 (731)
T TIGR02639 318 TTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKA 394 (731)
T ss_pred cCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHH
Confidence 99743 57999999 997 79999999999999999776542 11 133345566665554432 222
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHhhhcCCCccccccccccccccccHHHHHHHHHhc
Q 004267 692 TEICQRACKYAIRENIEKDIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFA 748 (764)
Q Consensus 692 ~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~ 748 (764)
-.++.+|+....-+. . ......|+.+|+..++..+
T Consensus 395 i~lld~a~a~~~~~~---~-------------------~~~~~~v~~~~i~~~i~~~ 429 (731)
T TIGR02639 395 IDVIDEAGASFRLRP---K-------------------AKKKANVSVKDIENVVAKM 429 (731)
T ss_pred HHHHHHhhhhhhcCc---c-------------------cccccccCHHHHHHHHHHH
Confidence 445555554221100 0 0012358888888888776
No 90
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=1.6e-16 Score=164.72 Aligned_cols=177 Identities=31% Similarity=0.551 Sum_probs=132.2
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhhhhccchhHHHHHHHHHHHHhcCCe-EEEEccccccCCCCCC
Q 004267 241 PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPS-IIFIDEIDSIAPKREK 319 (764)
Q Consensus 241 ~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~-il~iDEid~l~~~~~~ 319 (764)
+=++|++|||||||||++|+-||...|..+-...|.++.. .-.+.-.++..+|+-+...... +|||||.|+++..+..
T Consensus 383 pfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAP-lG~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnk 461 (630)
T KOG0742|consen 383 PFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAP-LGAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNK 461 (630)
T ss_pred hhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccc-cchHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhch
Confidence 3467999999999999999999999999988888777632 2234556899999999886554 6799999988777654
Q ss_pred Cc-hHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCC---
Q 004267 320 TH-GEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS--- 395 (764)
Q Consensus 320 ~~-~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~--- 395 (764)
.. ++..+..++.|+- ..-.....++++.+||+|.++|.++.. |+|..++||.|.+++|..+|..++.++.+.
T Consensus 462 tymSEaqRsaLNAlLf--RTGdqSrdivLvlAtNrpgdlDsAV~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~~ 537 (630)
T KOG0742|consen 462 TYMSEAQRSALNALLF--RTGDQSRDIVLVLATNRPGDLDSAVND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPAT 537 (630)
T ss_pred hhhcHHHHHHHHHHHH--HhcccccceEEEeccCCccchhHHHHh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcCC
Confidence 32 3333333333331 111223467777899999999999987 999999999999999999998776543211
Q ss_pred ---------------------C---chhhhHHhhhcCCCchHHHHHHHHHH
Q 004267 396 ---------------------D---DVDLERIAKDTHGYVGADLAALCTEA 422 (764)
Q Consensus 396 ---------------------~---~~~l~~la~~t~g~~~~dl~~l~~~a 422 (764)
. +..+.+.|+.|+||+|.+|..|+...
T Consensus 538 ~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREiakLva~v 588 (630)
T KOG0742|consen 538 SGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREIAKLVASV 588 (630)
T ss_pred CCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 0 11257788999999999999887643
No 91
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=4.3e-17 Score=164.72 Aligned_cols=149 Identities=31% Similarity=0.447 Sum_probs=125.4
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhC---------CeEEEEechhhhhhccchhHHHHHHHHHHHHhc-----CCeE
Q 004267 239 VKPPKGILLYGPPGSGKTLIARAVANETG---------AFFFCINGPEIMSKLAGESESNLRKAFEEAEKN-----APSI 304 (764)
Q Consensus 239 i~~~~~vLL~GppGtGKTtLar~la~~l~---------~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~-----~p~i 304 (764)
+...+-||||||||||||+|++++|+.+. ...+.+|+..++++|.+++.+.+..+|++.... .-..
T Consensus 174 It~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVf 253 (423)
T KOG0744|consen 174 ITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVF 253 (423)
T ss_pred eeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEE
Confidence 34567799999999999999999999984 346899999999999999999999999987652 1234
Q ss_pred EEEccccccCCCCCCC----chHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCChhhhccCCcceEEEecCCChHH
Q 004267 305 IFIDEIDSIAPKREKT----HGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVG 380 (764)
Q Consensus 305 l~iDEid~l~~~~~~~----~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~ 380 (764)
++|||+++++..|... .....-|+++.+++.+|.++..++|++++|+|-.+.+|.|+-. |-|-..+++.|+...
T Consensus 254 vLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~a 331 (423)
T KOG0744|consen 254 VLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDSIDVAFVD--RADIVFYVGPPTAEA 331 (423)
T ss_pred EEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHHHHHHHhhh--HhhheeecCCccHHH
Confidence 6799999998665221 1122358999999999999999999999999999999999987 889999999999999
Q ss_pred HHHHHHHHh
Q 004267 381 RLEVLRIHT 389 (764)
Q Consensus 381 R~~il~~~~ 389 (764)
+.+|++...
T Consensus 332 i~~Ilksci 340 (423)
T KOG0744|consen 332 IYEILKSCI 340 (423)
T ss_pred HHHHHHHHH
Confidence 999998543
No 92
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=2.3e-16 Score=168.01 Aligned_cols=177 Identities=27% Similarity=0.376 Sum_probs=135.0
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhhhhccch
Q 004267 206 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGE 285 (764)
Q Consensus 206 ~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~~g~ 285 (764)
+|+.++=-.+.+++|.+=+.--.+..+.|++.|..-.+|.|||||||||||+++-|+|+.++..++.++-.+...
T Consensus 199 tF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~----- 273 (457)
T KOG0743|consen 199 TFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKL----- 273 (457)
T ss_pred CccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccC-----
Confidence 455555445666666555555567788999999999999999999999999999999999999988887655432
Q ss_pred hHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCch---H----HHHHHHHHHHHHhhcccCCC--eEEEEEecCCCCC
Q 004267 286 SESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHG---E----VERRIVSQLLTLMDGLKSRA--HVIVIGATNRPNS 356 (764)
Q Consensus 286 ~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~---~----~~~~v~~~Ll~~ld~~~~~~--~v~vI~atn~~~~ 356 (764)
.. .++.++-.+... +||+|++||+-+.-++.... + ...-..+.|++.+|++.+.. .-+||.|||..+.
T Consensus 274 n~-dLr~LL~~t~~k--SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~Ek 350 (457)
T KOG0743|consen 274 DS-DLRHLLLATPNK--SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEK 350 (457)
T ss_pred cH-HHHHHHHhCCCC--cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhh
Confidence 12 277777766444 79999999987653321111 1 11234578999999998765 6677889999999
Q ss_pred CChhhhccCCcceEEEecCCChHHHHHHHHHHhc
Q 004267 357 IDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTK 390 (764)
Q Consensus 357 ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~ 390 (764)
+||||.||||.|.+|+++.-+.++-..+...++.
T Consensus 351 LDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~ 384 (457)
T KOG0743|consen 351 LDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLG 384 (457)
T ss_pred cCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcC
Confidence 9999999999999999999988877766666654
No 93
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.68 E-value=5.6e-16 Score=152.57 Aligned_cols=182 Identities=27% Similarity=0.433 Sum_probs=120.1
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhhh
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~ 280 (764)
.+.+-+++|+.|+++.+..++-++....... .+-.+++||||||+||||||+.||++++..+..++++.+..
T Consensus 17 ~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~--------~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k 88 (233)
T PF05496_consen 17 RLRPKSLDEFIGQEHLKGNLKILIRAAKKRG--------EALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK 88 (233)
T ss_dssp HTS-SSCCCS-S-HHHHHHHHHHHHHHHCTT--------S---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S
T ss_pred hcCCCCHHHccCcHHHHhhhHHHHHHHHhcC--------CCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh
Confidence 4667799999999999999877766432211 23458999999999999999999999999999998865421
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhccc-----C-----------CCe
Q 004267 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK-----S-----------RAH 344 (764)
Q Consensus 281 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-----~-----------~~~ 344 (764)
...+..++.... ...||||||||.+.+ .+.+.|+..|+... . -++
T Consensus 89 ------~~dl~~il~~l~--~~~ILFIDEIHRlnk-----------~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~ 149 (233)
T PF05496_consen 89 ------AGDLAAILTNLK--EGDILFIDEIHRLNK-----------AQQEILLPAMEDGKIDIIIGKGPNARSIRINLPP 149 (233)
T ss_dssp ------CHHHHHHHHT----TT-EEEECTCCC--H-----------HHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE---
T ss_pred ------HHHHHHHHHhcC--CCcEEEEechhhccH-----------HHHHHHHHHhccCeEEEEeccccccceeeccCCC
Confidence 123444444443 357999999998843 33466777776432 1 136
Q ss_pred EEEEEecCCCCCCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCC-CchhhhHHhhhcCCCc
Q 004267 345 VIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYV 411 (764)
Q Consensus 345 v~vI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~~ 411 (764)
+.+||||++...+.+.|+. ||.....+..++.++-.+|++...+.+.+. ++....++|.++.|-.
T Consensus 150 FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrGtP 215 (233)
T PF05496_consen 150 FTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRGTP 215 (233)
T ss_dssp -EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTTSH
T ss_pred ceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCCh
Confidence 8999999999999999998 998888999999999999998666655543 2334677888887753
No 94
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.68 E-value=6e-16 Score=166.15 Aligned_cols=192 Identities=24% Similarity=0.343 Sum_probs=135.0
Q ss_pred cccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccchhcccCc
Q 004267 479 SWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGE 558 (764)
Q Consensus 479 ~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~~~~~g~ 558 (764)
+|+++.|++++++.|...+..... .-..+.+++|+||||||||+||+++|++++.++..+.++.+..
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~--------~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~----- 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKM--------RQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK----- 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHh--------cCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC-----
Confidence 589999999999988776532111 1123456999999999999999999999988877666543321
Q ss_pred chHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCC----------------CCCcEE
Q 004267 559 SEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS----------------AKKTVF 622 (764)
Q Consensus 559 se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~----------------~~~~v~ 622 (764)
...+...+... ..+.++|||||+.+.+. ..+.|+..|+... ....+.
T Consensus 69 -~~~l~~~l~~~--~~~~vl~iDEi~~l~~~--------------~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 131 (305)
T TIGR00635 69 -PGDLAAILTNL--EEGDVLFIDEIHRLSPA--------------VEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFT 131 (305)
T ss_pred -chhHHHHHHhc--ccCCEEEEehHhhhCHH--------------HHHHhhHHHhhhheeeeeccCccccceeecCCCeE
Confidence 12233333332 34579999999997542 1122333333211 123478
Q ss_pred EEecCCCCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCCC-cccHHHHHHHCCCCCHHHHHHHHHHHHHH
Q 004267 623 IIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSK-DVDLRALAKYTQGFSGADITEICQRACKY 701 (764)
Q Consensus 623 vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~-~~~l~~la~~~~g~sg~di~~~~~~a~~~ 701 (764)
+|++||++..+++++.+ ||...+.+++|+.+++.+|++.......+.- +..++.+++.+.| +++.+.++|..+...
T Consensus 132 li~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G-~pR~~~~ll~~~~~~ 208 (305)
T TIGR00635 132 LVGATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRG-TPRIANRLLRRVRDF 208 (305)
T ss_pred EEEecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCC-CcchHHHHHHHHHHH
Confidence 99999999999999987 9999999999999999999998886654432 3346788888877 447777888876655
Q ss_pred HH
Q 004267 702 AI 703 (764)
Q Consensus 702 a~ 703 (764)
|.
T Consensus 209 a~ 210 (305)
T TIGR00635 209 AQ 210 (305)
T ss_pred HH
Confidence 43
No 95
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=6e-15 Score=171.18 Aligned_cols=158 Identities=24% Similarity=0.390 Sum_probs=106.9
Q ss_pred ccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhC----------CeEEEEechhhh
Q 004267 210 VGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG----------AFFFCINGPEIM 279 (764)
Q Consensus 210 i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~----------~~~i~v~~~~l~ 279 (764)
+|+.++.++.+.+++.. ...++-+|+|.||+|||.++.-+|+.+- ..++.++-..+.
T Consensus 189 igr~deeirRvi~iL~R-------------rtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~ 255 (898)
T KOG1051|consen 189 IGRHDEEIRRVIEILSR-------------KTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLV 255 (898)
T ss_pred cCCchHHHHHHHHHHhc-------------cCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcc
Confidence 45557777777666643 2236789999999999999999998752 234444433232
Q ss_pred --hhccchhHHHHHHHHHHHHh-cCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCC-
Q 004267 280 --SKLAGESESNLRKAFEEAEK-NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPN- 355 (764)
Q Consensus 280 --~~~~g~~~~~l~~vf~~a~~-~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~- 355 (764)
.++.|+.+.++..+...+.. ....|||+||++-+...... .+.+ ...+++.....++.+-+||||..-.
T Consensus 256 aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~-~~~~------d~~nlLkp~L~rg~l~~IGatT~e~Y 328 (898)
T KOG1051|consen 256 AGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSN-YGAI------DAANLLKPLLARGGLWCIGATTLETY 328 (898)
T ss_pred cCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCc-chHH------HHHHhhHHHHhcCCeEEEecccHHHH
Confidence 46778899999999999884 45678899999999876654 1111 1223333333455689998877322
Q ss_pred ----CCChhhhccCCcceEEEecCCChHHHHHHHHHHhc
Q 004267 356 ----SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTK 390 (764)
Q Consensus 356 ----~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~ 390 (764)
.-+|++.+ ||+. +.++.|.......||.....
T Consensus 329 ~k~iekdPalEr--rw~l-~~v~~pS~~~~~~iL~~l~~ 364 (898)
T KOG1051|consen 329 RKCIEKDPALER--RWQL-VLVPIPSVENLSLILPGLSE 364 (898)
T ss_pred HHHHhhCcchhh--Ccce-eEeccCcccchhhhhhhhhh
Confidence 34899988 7844 67889988776666664433
No 96
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.66 E-value=1.8e-15 Score=158.36 Aligned_cols=174 Identities=27% Similarity=0.479 Sum_probs=124.4
Q ss_pred ccccccccchhhhhc---ccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccchhc
Q 004267 478 VSWEDIGGLENVKRE---LQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM 554 (764)
Q Consensus 478 v~~~~i~g~~~~k~~---l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~~~ 554 (764)
-++++++|++++... |.+++. -....+++|||||||||||||+++|+..+..|..++.-
T Consensus 21 ~~lde~vGQ~HLlg~~~~lrr~v~-------------~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv----- 82 (436)
T COG2256 21 KSLDEVVGQEHLLGEGKPLRRAVE-------------AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV----- 82 (436)
T ss_pred CCHHHhcChHhhhCCCchHHHHHh-------------cCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc-----
Confidence 456888888876532 112111 12334699999999999999999999999999999873
Q ss_pred ccCcchHHHHHHHHHHhhCC----CeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecC--C
Q 004267 555 WFGESEANVREIFDKARQSA----PCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGAT--N 628 (764)
Q Consensus 555 ~~g~se~~i~~~f~~a~~~~----p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aT--n 628 (764)
-.+-+.+|++|+.|++.. ..|||+|||+++-... -..||-.|+ .+.+++|||| |
T Consensus 83 --~~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~Q--------------QD~lLp~vE----~G~iilIGATTEN 142 (436)
T COG2256 83 --TSGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQ--------------QDALLPHVE----NGTIILIGATTEN 142 (436)
T ss_pred --cccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhh--------------hhhhhhhhc----CCeEEEEeccCCC
Confidence 245788999999996543 3799999999985421 234666664 5577888877 7
Q ss_pred CCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHh--ccCCCC------CcccHHHHHHHCCCCCHHHHHHHHH
Q 004267 629 RPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACL--RKSPVS------KDVDLRALAKYTQGFSGADITEICQ 696 (764)
Q Consensus 629 ~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~--~~~~~~------~~~~l~~la~~~~g~sg~di~~~~~ 696 (764)
..-.|.+||++ |.. ++.+.+.+.++...+++..+ ...++. ++.-++.++..++| |.+..++
T Consensus 143 PsF~ln~ALlS--R~~-vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~G----D~R~aLN 211 (436)
T COG2256 143 PSFELNPALLS--RAR-VFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNG----DARRALN 211 (436)
T ss_pred CCeeecHHHhh--hhh-eeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCc----hHHHHHH
Confidence 77799999998 774 78889999999988888844 222333 23335667777665 5554443
No 97
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.66 E-value=1.1e-15 Score=165.28 Aligned_cols=194 Identities=26% Similarity=0.371 Sum_probs=139.6
Q ss_pred ccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccchhcccC
Q 004267 478 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFG 557 (764)
Q Consensus 478 v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~~~~~g 557 (764)
..|+++.|+++.++.+...+..... .-.++.+++|+||||||||++|+++|++++..+..++++.+.
T Consensus 22 ~~~~~~vG~~~~~~~l~~~l~~~~~--------~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~----- 88 (328)
T PRK00080 22 KSLDEFIGQEKVKENLKIFIEAAKK--------RGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE----- 88 (328)
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHHh--------cCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc-----
Confidence 3689999999999888766542111 113456799999999999999999999999988877776432
Q ss_pred cchHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCC----------------CCCcE
Q 004267 558 ESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS----------------AKKTV 621 (764)
Q Consensus 558 ~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~----------------~~~~v 621 (764)
....+..++.... .++++|||||+.+... .... |...|+... ....+
T Consensus 89 -~~~~l~~~l~~l~--~~~vl~IDEi~~l~~~-----------~~e~---l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~ 151 (328)
T PRK00080 89 -KPGDLAAILTNLE--EGDVLFIDEIHRLSPV-----------VEEI---LYPAMEDFRLDIMIGKGPAARSIRLDLPPF 151 (328)
T ss_pred -ChHHHHHHHHhcc--cCCEEEEecHhhcchH-----------HHHH---HHHHHHhcceeeeeccCccccceeecCCCc
Confidence 2234555555443 4579999999997431 1222 233333210 11347
Q ss_pred EEEecCCCCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCCCc-ccHHHHHHHCCCCCHHHHHHHHHHHHH
Q 004267 622 FIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKD-VDLRALAKYTQGFSGADITEICQRACK 700 (764)
Q Consensus 622 ~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~-~~l~~la~~~~g~sg~di~~~~~~a~~ 700 (764)
.+|++||++..+++++.+ ||...+.+++|+.+++.+|++......++.-+ .-+..+++.+.| +++.+..+++.+..
T Consensus 152 ~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G-~pR~a~~~l~~~~~ 228 (328)
T PRK00080 152 TLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRG-TPRIANRLLRRVRD 228 (328)
T ss_pred eEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCC-CchHHHHHHHHHHH
Confidence 889999999999999877 99999999999999999999998877655432 237788888876 55778888877666
Q ss_pred HHHH
Q 004267 701 YAIR 704 (764)
Q Consensus 701 ~a~~ 704 (764)
.|..
T Consensus 229 ~a~~ 232 (328)
T PRK00080 229 FAQV 232 (328)
T ss_pred HHHH
Confidence 5543
No 98
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.64 E-value=6.2e-16 Score=181.24 Aligned_cols=177 Identities=24% Similarity=0.305 Sum_probs=131.7
Q ss_pred CCcceeeeCCCCCChhHHHHHHHHHh----------CCeeEEEecccch--hcccCcchHHHHHHHHHHhhCCCeEEEEe
Q 004267 514 PSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISVKGPELL--TMWFGESEANVREIFDKARQSAPCVLFFD 581 (764)
Q Consensus 514 ~~~gill~GppGtGKT~lak~lA~~~----------~~~~i~v~~~~l~--~~~~g~se~~i~~~f~~a~~~~p~iifiD 581 (764)
...+++|+||||||||++|+++|... +..++.++...++ .+|.|+.+..++.+|..+++..++|||||
T Consensus 206 ~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfID 285 (758)
T PRK11034 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFID 285 (758)
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEec
Confidence 34568999999999999999999864 4556666666665 57889999999999999988888999999
Q ss_pred cccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCC-----CCCccCCCCCccceEEeecCCCHHH
Q 004267 582 ELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPD-----IIDPALLRPGRLDQLIYIPLPDEDS 656 (764)
Q Consensus 582 Eid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~-----~ld~allrpgRf~~~i~~~~p~~~~ 656 (764)
||+.+++.++.+. ....+.+.|...+ ..+.+.+|+|||.++ ..|+||.| ||+ .|+++.|+.++
T Consensus 286 EIh~L~g~g~~~~-----g~~d~~nlLkp~L----~~g~i~vIgATt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~ 353 (758)
T PRK11034 286 EIHTIIGAGAASG-----GQVDAANLIKPLL----SSGKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEE 353 (758)
T ss_pred cHHHHhccCCCCC-----cHHHHHHHHHHHH----hCCCeEEEecCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHH
Confidence 9999988653221 1122333333233 356799999999865 57999999 996 79999999999
Q ss_pred HHHHHHHHhccCCCCCcccH-----HHHHHHC-----CCCCHHHHHHHHHHHHHHH
Q 004267 657 RHQIFKACLRKSPVSKDVDL-----RALAKYT-----QGFSGADITEICQRACKYA 702 (764)
Q Consensus 657 r~~Il~~~~~~~~~~~~~~l-----~~la~~~-----~g~sg~di~~~~~~a~~~a 702 (764)
+..|++.+..++....++++ ...+..+ +.+-+.....++.+|+...
T Consensus 354 ~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaidlldea~a~~ 409 (758)
T PRK11034 354 TVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARA 409 (758)
T ss_pred HHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHHHHHHHHHhh
Confidence 99999988766655444443 3333333 3345557788999988643
No 99
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.62 E-value=5.7e-15 Score=147.70 Aligned_cols=192 Identities=26% Similarity=0.405 Sum_probs=143.9
Q ss_pred ccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccchhcccC
Q 004267 478 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFG 557 (764)
Q Consensus 478 v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~~~~~g 557 (764)
-.|++..|++++|++|.-.+.......+ ..-++|||||||.||||||..+|++++.++-..+|+-+-
T Consensus 23 ~~l~efiGQ~~vk~~L~ifI~AAk~r~e--------~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~le----- 89 (332)
T COG2255 23 KTLDEFIGQEKVKEQLQIFIKAAKKRGE--------ALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALE----- 89 (332)
T ss_pred ccHHHhcChHHHHHHHHHHHHHHHhcCC--------CcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEeccccccc-----
Confidence 4578999999999999876665433332 345699999999999999999999999999999988763
Q ss_pred cchHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCC----------------CCCcE
Q 004267 558 ESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS----------------AKKTV 621 (764)
Q Consensus 558 ~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~----------------~~~~v 621 (764)
....+..++...... .|+|+|||+++.+ ...++ |.-.|+.+. +...+
T Consensus 90 -K~gDlaaiLt~Le~~--DVLFIDEIHrl~~-----------~vEE~---LYpaMEDf~lDI~IG~gp~Arsv~ldLppF 152 (332)
T COG2255 90 -KPGDLAAILTNLEEG--DVLFIDEIHRLSP-----------AVEEV---LYPAMEDFRLDIIIGKGPAARSIRLDLPPF 152 (332)
T ss_pred -ChhhHHHHHhcCCcC--CeEEEehhhhcCh-----------hHHHH---hhhhhhheeEEEEEccCCccceEeccCCCe
Confidence 344566667665544 6999999999854 23333 334455431 22468
Q ss_pred EEEecCCCCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCCCccc-HHHHHHHCCCCCHHHHHHHHHHHHH
Q 004267 622 FIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVD-LRALAKYTQGFSGADITEICQRACK 700 (764)
Q Consensus 622 ~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~-l~~la~~~~g~sg~di~~~~~~a~~ 700 (764)
.+|+||.+.-.|...|.. ||..+..+..++.++..+|++...+.+.+.-+.+ ..++|+++.| |++=...++++.--
T Consensus 153 TLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRG-TPRIAnRLLrRVRD 229 (332)
T COG2255 153 TLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRG-TPRIANRLLRRVRD 229 (332)
T ss_pred eEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccC-CcHHHHHHHHHHHH
Confidence 899999999999988887 9999999999999999999999998877664433 5678877765 66544455554444
Q ss_pred HH
Q 004267 701 YA 702 (764)
Q Consensus 701 ~a 702 (764)
.|
T Consensus 230 fa 231 (332)
T COG2255 230 FA 231 (332)
T ss_pred HH
Confidence 44
No 100
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.61 E-value=6.9e-15 Score=161.60 Aligned_cols=223 Identities=22% Similarity=0.299 Sum_probs=146.4
Q ss_pred ccccchhhhhcccceeeccCCChhh-hhh-ccC-CCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccch-hcccC
Q 004267 482 DIGGLENVKRELQETVQYPVEHPEK-FEK-FGM-SPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-TMWFG 557 (764)
Q Consensus 482 ~i~g~~~~k~~l~~~v~~~~~~~~~-~~~-~~~-~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~-~~~~g 557 (764)
.|.|++.+++.|...+..+.+.... ... -.. .+..++||+||||||||++|+++|..++.+|+.+++..+. ..|+|
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG 151 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVG 151 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCccc
Confidence 4889999999886554321111100 000 011 1345699999999999999999999999999999998875 46888
Q ss_pred cchHH-HHHHHHHH----hhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCC-----------CCCcE
Q 004267 558 ESEAN-VREIFDKA----RQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-----------AKKTV 621 (764)
Q Consensus 558 ~se~~-i~~~f~~a----~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~-----------~~~~v 621 (764)
..... +..+++.+ ....++||||||||.+...+...+...+-.+..+.+.||+.|||.. +....
T Consensus 152 ~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~ 231 (412)
T PRK05342 152 EDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEF 231 (412)
T ss_pred chHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCe
Confidence 86444 45555432 2456789999999999876433222222223568889999998631 12245
Q ss_pred EEEecCCCCCC----------------------------------------------------CCccCCCCCccceEEee
Q 004267 622 FIIGATNRPDI----------------------------------------------------IDPALLRPGRLDQLIYI 649 (764)
Q Consensus 622 ~vi~aTn~~~~----------------------------------------------------ld~allrpgRf~~~i~~ 649 (764)
++|.|+|-... +.|.|+ ||+|.+++|
T Consensus 232 ~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEfl--gRld~iv~f 309 (412)
T PRK05342 232 IQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFI--GRLPVVATL 309 (412)
T ss_pred EEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHh--CCCCeeeec
Confidence 66777665110 223333 699999999
Q ss_pred cCCCHHHHHHHHHH----Hhc-------cCCCCCccc---HHHHHHH--CCCCCHHHHHHHHHHHHHHHHHHH
Q 004267 650 PLPDEDSRHQIFKA----CLR-------KSPVSKDVD---LRALAKY--TQGFSGADITEICQRACKYAIREN 706 (764)
Q Consensus 650 ~~p~~~~r~~Il~~----~~~-------~~~~~~~~~---l~~la~~--~~g~sg~di~~~~~~a~~~a~~~~ 706 (764)
.+.+.++..+|+.. .++ ..++.-.++ ++.||+. ..++-.+.|+.+++....-.+.+.
T Consensus 310 ~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~~~ 382 (412)
T PRK05342 310 EELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMFEL 382 (412)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHHhc
Confidence 99999999999973 222 223332222 5566764 345666788888888777777654
No 101
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.60 E-value=1.5e-14 Score=173.00 Aligned_cols=164 Identities=23% Similarity=0.333 Sum_probs=124.5
Q ss_pred ccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhh--------
Q 004267 208 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIM-------- 279 (764)
Q Consensus 208 ~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~-------- 279 (764)
+++.|+++.++.|.+++..+...+ -..+..++|+||||||||++|++||+.++.+++.++.....
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~-------~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~ 392 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRG-------KMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGH 392 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhc-------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCC
Confidence 368999999999998877543221 12345799999999999999999999999999888654321
Q ss_pred -hhccchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcc-----c--------CCCeE
Q 004267 280 -SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGL-----K--------SRAHV 345 (764)
Q Consensus 280 -~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~-----~--------~~~~v 345 (764)
..|.|.....+...|..+....| ++||||||.+.+..... ..+.|++.|+.. . ...++
T Consensus 393 ~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~~-------~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v 464 (775)
T TIGR00763 393 RRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRGD-------PASALLEVLDPEQNNAFSDHYLDVPFDLSKV 464 (775)
T ss_pred CCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCCC-------HHHHHHHhcCHHhcCccccccCCceeccCCE
Confidence 24666667777888888766666 89999999998643221 124566666531 1 11478
Q ss_pred EEEEecCCCCCCChhhhccCCcceEEEecCCChHHHHHHHHHHh
Q 004267 346 IVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHT 389 (764)
Q Consensus 346 ~vI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~ 389 (764)
++|+|||.++.+++++++ || ..|+++.|+.+++.+|++.++
T Consensus 465 ~~I~TtN~~~~i~~~L~~--R~-~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 465 IFIATANSIDTIPRPLLD--RM-EVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred EEEEecCCchhCCHHHhC--Ce-eEEecCCCCHHHHHHHHHHHH
Confidence 899999999999999998 88 478999999999999998764
No 102
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.59 E-value=9.7e-15 Score=146.07 Aligned_cols=182 Identities=25% Similarity=0.401 Sum_probs=140.7
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhhh
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~ 280 (764)
.+.+-.|++..|.++.++++.-++.-..... ....++||+||||.||||||+.+|++++..+...+|+.+..
T Consensus 19 ~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~--------e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK 90 (332)
T COG2255 19 SLRPKTLDEFIGQEKVKEQLQIFIKAAKKRG--------EALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK 90 (332)
T ss_pred ccCcccHHHhcChHHHHHHHHHHHHHHHhcC--------CCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC
Confidence 4556689999999999999988887643332 34568999999999999999999999999998888887632
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccC----------------CCe
Q 004267 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKS----------------RAH 344 (764)
Q Consensus 281 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~----------------~~~ 344 (764)
...+-.++..... .+|+||||||.+.+. +.+.|...|+.+.- -++
T Consensus 91 ------~gDlaaiLt~Le~--~DVLFIDEIHrl~~~-----------vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLpp 151 (332)
T COG2255 91 ------PGDLAAILTNLEE--GDVLFIDEIHRLSPA-----------VEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPP 151 (332)
T ss_pred ------hhhHHHHHhcCCc--CCeEEEehhhhcChh-----------HHHHhhhhhhheeEEEEEccCCccceEeccCCC
Confidence 3345555555443 379999999998654 33456666665431 247
Q ss_pred EEEEEecCCCCCCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCC-CchhhhHHhhhcCCCc
Q 004267 345 VIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYV 411 (764)
Q Consensus 345 v~vI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~~ 411 (764)
+.+||+|.+...+...|+. ||.....+...+.++-.+|+....+.+.+. ++....++|+++.|..
T Consensus 152 FTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTP 217 (332)
T COG2255 152 FTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTP 217 (332)
T ss_pred eeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCc
Confidence 8999999999999999998 999999999999999999998777666554 2334677888888754
No 103
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.57 E-value=2.9e-14 Score=168.66 Aligned_cols=228 Identities=21% Similarity=0.321 Sum_probs=154.9
Q ss_pred cccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccch--------
Q 004267 481 EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-------- 552 (764)
Q Consensus 481 ~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~-------- 552 (764)
.+..|++.+|+.+.+.+..... .+......++|+||||||||++++.+|+.++.+|+.++.....
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~-------~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~ 394 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSR-------VNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGH 394 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHh-------cccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccc
Confidence 4578999999998776543211 1112234599999999999999999999999999888755432
Q ss_pred -hcccCcchHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCC-------------CCC
Q 004267 553 -TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGM-------------SAK 618 (764)
Q Consensus 553 -~~~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~-------------~~~ 618 (764)
..|+|.....+.+.+..+....| |+||||||.+...... ...+.||..||.- .+.
T Consensus 395 ~~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~g----------~~~~aLlevld~~~~~~~~d~~~~~~~dl 463 (784)
T PRK10787 395 RRTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMRG----------DPASALLEVLDPEQNVAFSDHYLEVDYDL 463 (784)
T ss_pred hhccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccCC----------CHHHHHHHHhccccEEEEecccccccccC
Confidence 25778777777777877665555 8999999998653211 1245566666631 134
Q ss_pred CcEEEEecCCCCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhcc-----CCCC---Cccc---HHHHHH-HCCCC
Q 004267 619 KTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRK-----SPVS---KDVD---LRALAK-YTQGF 686 (764)
Q Consensus 619 ~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~-----~~~~---~~~~---l~~la~-~~~g~ 686 (764)
+++++|+|||.. .|+|+|+. ||+ +|.|+.++.++..+|.+.++.. ..+. -.++ +..+++ ++..+
T Consensus 464 s~v~~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~ 539 (784)
T PRK10787 464 SDVMFVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREA 539 (784)
T ss_pred CceEEEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCccc
Confidence 789999999987 49999998 996 8999999999999999998831 1111 1111 344443 23344
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCCCccccccccccccccccHHHHHHHHHhcC
Q 004267 687 SGADITEICQRACKYAIRENIEKDIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFAR 749 (764)
Q Consensus 687 sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~ 749 (764)
-.+.|+..++..+..++.+.+... ......|+.+++++.+..-+
T Consensus 540 GaR~LeR~I~~i~r~~l~~~~~~~-------------------~~~~v~v~~~~~~~~lg~~~ 583 (784)
T PRK10787 540 GVRSLEREISKLCRKAVKQLLLDK-------------------SLKHIEINGDNLHDYLGVQR 583 (784)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhcC-------------------CCceeeecHHHHHHHhCCCc
Confidence 456777777766555555443210 01234689999888887443
No 104
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.57 E-value=2.5e-14 Score=156.19 Aligned_cols=224 Identities=21% Similarity=0.301 Sum_probs=146.6
Q ss_pred cccccchhhhhcccceeeccCCChhh----hhhccCC-CCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccch-hc
Q 004267 481 EDIGGLENVKRELQETVQYPVEHPEK----FEKFGMS-PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-TM 554 (764)
Q Consensus 481 ~~i~g~~~~k~~l~~~v~~~~~~~~~----~~~~~~~-~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~-~~ 554 (764)
..|.|++++++.+...+....+.... ....++. ...++||+||||||||++|+++|..++.+|..+++..+. ..
T Consensus 77 ~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~g 156 (413)
T TIGR00382 77 EYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAG 156 (413)
T ss_pred ceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccc
Confidence 34789999999886554211111000 0000111 134699999999999999999999999999999988765 36
Q ss_pred ccCcc-hHHHHHHHHHH----hhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCC-----------CC
Q 004267 555 WFGES-EANVREIFDKA----RQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-----------AK 618 (764)
Q Consensus 555 ~~g~s-e~~i~~~f~~a----~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~-----------~~ 618 (764)
|+|+. +..+..+++.+ ....++||||||||.+..++...+....-.+..+.+.||+.|+|.. +.
T Consensus 157 yvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~ 236 (413)
T TIGR00382 157 YVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPY 236 (413)
T ss_pred cccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccC
Confidence 88986 34455555433 2346789999999999876433221112223468888999998642 12
Q ss_pred CcEEEEecCCCCC--------------------------------------------------CCCccCCCCCccceEEe
Q 004267 619 KTVFIIGATNRPD--------------------------------------------------IIDPALLRPGRLDQLIY 648 (764)
Q Consensus 619 ~~v~vi~aTn~~~--------------------------------------------------~ld~allrpgRf~~~i~ 648 (764)
.+.++|.|+|-.. -+.|+|+ ||+|.+++
T Consensus 237 ~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEfl--gRld~Iv~ 314 (413)
T TIGR00382 237 QEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFI--GRLPVIAT 314 (413)
T ss_pred CCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHh--CCCCeEee
Confidence 4578888888610 0224444 69999999
Q ss_pred ecCCCHHHHHHHHHHH----hcc-------CCCCCccc---HHHHHHH--CCCCCHHHHHHHHHHHHHHHHHHH
Q 004267 649 IPLPDEDSRHQIFKAC----LRK-------SPVSKDVD---LRALAKY--TQGFSGADITEICQRACKYAIREN 706 (764)
Q Consensus 649 ~~~p~~~~r~~Il~~~----~~~-------~~~~~~~~---l~~la~~--~~g~sg~di~~~~~~a~~~a~~~~ 706 (764)
|.+.+.++..+|+... +++ .++.-.++ ++.+|+. ...+-.+-|+.+++...+.++.+.
T Consensus 315 f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~e~ 388 (413)
T TIGR00382 315 LEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMFDL 388 (413)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHhhC
Confidence 9999999999998753 221 13322222 5566765 345666788888887777666654
No 105
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=9.6e-15 Score=161.35 Aligned_cols=164 Identities=28% Similarity=0.450 Sum_probs=127.9
Q ss_pred cccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccch--------
Q 004267 481 EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-------- 552 (764)
Q Consensus 481 ~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~-------- 552 (764)
+|-.|++++|+++.+.+...... |-..++-++|+||||+|||+++|.+|..++..|+.++-.-+.
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLr-------gs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLR-------GSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGH 483 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhc-------ccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhccc
Confidence 56779999999998876542211 222334499999999999999999999999999998754332
Q ss_pred -hcccCcchHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhc---------CC----CCC
Q 004267 553 -TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMD---------GM----SAK 618 (764)
Q Consensus 553 -~~~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld---------~~----~~~ 618 (764)
..|+|.-...+-+..++..-..| +++|||||.+.. |.. ++.. +.||..|| .+ -+.
T Consensus 484 RRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~--g~q-GDPa-------sALLElLDPEQNanFlDHYLdVp~DL 552 (906)
T KOG2004|consen 484 RRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGS--GHQ-GDPA-------SALLELLDPEQNANFLDHYLDVPVDL 552 (906)
T ss_pred ceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCC--CCC-CChH-------HHHHHhcChhhccchhhhccccccch
Confidence 35899999999999999888887 899999999972 222 1211 22333333 22 245
Q ss_pred CcEEEEecCCCCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHh
Q 004267 619 KTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACL 665 (764)
Q Consensus 619 ~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~ 665 (764)
.+|++|||.|..+.|+++|+- |+. +|.++-+..++..+|-+.|+
T Consensus 553 SkVLFicTAN~idtIP~pLlD--RME-vIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 553 SKVLFICTANVIDTIPPPLLD--RME-VIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred hheEEEEeccccccCChhhhh--hhh-eeeccCccHHHHHHHHHHhh
Confidence 789999999999999999998 996 99999999999999999988
No 106
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.56 E-value=1.4e-13 Score=149.00 Aligned_cols=192 Identities=24% Similarity=0.381 Sum_probs=136.3
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhhh
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~ 280 (764)
.+.+.+|+++.|.++.++.+..++...... -.++.+++|+||||||||++|+++|++++..+..++++.+..
T Consensus 18 ~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~--------~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~ 89 (328)
T PRK00080 18 SLRPKSLDEFIGQEKVKENLKIFIEAAKKR--------GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK 89 (328)
T ss_pred hcCcCCHHHhcCcHHHHHHHHHHHHHHHhc--------CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC
Confidence 455668999999999999998887542111 134678999999999999999999999998887777654321
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhccc----------------CCCe
Q 004267 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK----------------SRAH 344 (764)
Q Consensus 281 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~----------------~~~~ 344 (764)
...+..++... ..+++|||||+|.+... .+ +.|...|+... .-++
T Consensus 90 ------~~~l~~~l~~l--~~~~vl~IDEi~~l~~~-------~~----e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~ 150 (328)
T PRK00080 90 ------PGDLAAILTNL--EEGDVLFIDEIHRLSPV-------VE----EILYPAMEDFRLDIMIGKGPAARSIRLDLPP 150 (328)
T ss_pred ------hHHHHHHHHhc--ccCCEEEEecHhhcchH-------HH----HHHHHHHHhcceeeeeccCccccceeecCCC
Confidence 22344444433 34679999999988532 11 22333333221 1134
Q ss_pred EEEEEecCCCCCCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCC-CchhhhHHhhhcCCCchHHHHHHHHHH
Q 004267 345 VIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTEA 422 (764)
Q Consensus 345 v~vI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~a 422 (764)
+.+|++|+++..+++.+++ ||...+.++.|+.+++.++++.......+. ++..+..++..+.|+. ..+..++..+
T Consensus 151 ~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~p-R~a~~~l~~~ 226 (328)
T PRK00080 151 FTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTP-RIANRLLRRV 226 (328)
T ss_pred ceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCc-hHHHHHHHHH
Confidence 7889999999999999987 898889999999999999999776654433 3335788999998876 4444444443
No 107
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.56 E-value=1.2e-14 Score=173.87 Aligned_cols=196 Identities=21% Similarity=0.333 Sum_probs=136.8
Q ss_pred cccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHh----------CCeeEEEec
Q 004267 479 SWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISVKG 548 (764)
Q Consensus 479 ~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~----------~~~~i~v~~ 548 (764)
.++++.|.++..+.+.+.+ ......+++|+||||||||++|+.+|... +..++.++.
T Consensus 185 ~ld~~iGr~~ei~~~i~~l-------------~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l 251 (852)
T TIGR03345 185 KIDPVLGRDDEIRQMIDIL-------------LRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDL 251 (852)
T ss_pred CCCcccCCHHHHHHHHHHH-------------hcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeeh
Confidence 4567777776544333221 11234579999999999999999999975 245777777
Q ss_pred ccch--hcccCcchHHHHHHHHHHhh-CCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEe
Q 004267 549 PELL--TMWFGESEANVREIFDKARQ-SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIG 625 (764)
Q Consensus 549 ~~l~--~~~~g~se~~i~~~f~~a~~-~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~ 625 (764)
..+. .+|.|+.++.++.+|+.++. ..++|+|||||+.+.+.++... ... +-+.|+..| ..+.+.+||
T Consensus 252 ~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~--~~d----~~n~Lkp~l----~~G~l~~Ig 321 (852)
T TIGR03345 252 GLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAG--QGD----AANLLKPAL----ARGELRTIA 321 (852)
T ss_pred hhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccc--ccc----HHHHhhHHh----hCCCeEEEE
Confidence 7665 36899999999999999865 4678999999999987654321 111 223344433 356789999
Q ss_pred cCCCCC-----CCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCC----CC-CcccHHHHHHHCCCCCH-----HH
Q 004267 626 ATNRPD-----IIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSP----VS-KDVDLRALAKYTQGFSG-----AD 690 (764)
Q Consensus 626 aTn~~~-----~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~----~~-~~~~l~~la~~~~g~sg-----~d 690 (764)
||+..+ .+||||.| ||. .|.|+.|+.+++..||+.+.+... +. .+..+..++..+.+|-+ ..
T Consensus 322 aTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDK 398 (852)
T TIGR03345 322 ATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDK 398 (852)
T ss_pred ecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCccH
Confidence 998643 58999999 996 899999999999999876664432 21 34456777777766532 23
Q ss_pred HHHHHHHHHH
Q 004267 691 ITEICQRACK 700 (764)
Q Consensus 691 i~~~~~~a~~ 700 (764)
.-.++.+|+.
T Consensus 399 AIdlldea~a 408 (852)
T TIGR03345 399 AVSLLDTACA 408 (852)
T ss_pred HHHHHHHHHH
Confidence 3345565544
No 108
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.56 E-value=1.3e-14 Score=174.01 Aligned_cols=164 Identities=20% Similarity=0.354 Sum_probs=123.0
Q ss_pred cccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHh----------CCeeEEEec
Q 004267 479 SWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISVKG 548 (764)
Q Consensus 479 ~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~----------~~~~i~v~~ 548 (764)
.++.+.|.+...+.+.+.+ ..+...+++|+||||||||++|+++|... +.+++.++.
T Consensus 176 ~l~~vigr~~ei~~~i~iL-------------~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l 242 (857)
T PRK10865 176 KLDPVIGRDEEIRRTIQVL-------------QRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDM 242 (857)
T ss_pred CCCcCCCCHHHHHHHHHHH-------------hcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEeh
Confidence 3566777766443333221 12334569999999999999999999986 678888888
Q ss_pred ccch--hcccCcchHHHHHHHHHHhh-CCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEe
Q 004267 549 PELL--TMWFGESEANVREIFDKARQ-SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIG 625 (764)
Q Consensus 549 ~~l~--~~~~g~se~~i~~~f~~a~~-~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~ 625 (764)
..++ .+|.|+.++.++.+|+.+.. ..++|+||||++.+.+.++.. +. ...-+.|+..| ..+.+.+||
T Consensus 243 ~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~-----~~-~d~~~~lkp~l----~~g~l~~Ig 312 (857)
T PRK10865 243 GALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKAD-----GA-MDAGNMLKPAL----ARGELHCVG 312 (857)
T ss_pred hhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCc-----cc-hhHHHHhcchh----hcCCCeEEE
Confidence 8776 56899999999999998644 568999999999998765322 11 11223333333 456889999
Q ss_pred cCCCCC-----CCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccC
Q 004267 626 ATNRPD-----IIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKS 668 (764)
Q Consensus 626 aTn~~~-----~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~ 668 (764)
||+..+ .+|+|+.| ||+ .|+++.|+.+++..|++.+....
T Consensus 313 aTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~~ 357 (857)
T PRK10865 313 ATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKERY 357 (857)
T ss_pred cCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhhh
Confidence 999877 48999999 998 68899999999999998877554
No 109
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.55 E-value=3.2e-14 Score=162.52 Aligned_cols=209 Identities=25% Similarity=0.335 Sum_probs=141.3
Q ss_pred ccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHh----------CCeeEEEe
Q 004267 478 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISVK 547 (764)
Q Consensus 478 v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~----------~~~~i~v~ 547 (764)
.+|+++.|++...+.++..+.. ..+.+++|+||||||||++|+++...+ +.+|+.++
T Consensus 62 ~~f~~iiGqs~~i~~l~~al~~-------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id 128 (531)
T TIGR02902 62 KSFDEIIGQEEGIKALKAALCG-------------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEID 128 (531)
T ss_pred CCHHHeeCcHHHHHHHHHHHhC-------------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEc
Confidence 5688999999888777643211 123569999999999999999998642 36789998
Q ss_pred cccc-------hhcccCcchHH----------------HHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHH
Q 004267 548 GPEL-------LTMWFGESEAN----------------VREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRV 604 (764)
Q Consensus 548 ~~~l-------~~~~~g~se~~----------------i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~ 604 (764)
+... ....+|..... -...+..| ...++|||||+.+.. ..
T Consensus 129 ~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a---~gG~L~IdEI~~L~~--------------~~ 191 (531)
T TIGR02902 129 ATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRA---HGGVLFIDEIGELHP--------------VQ 191 (531)
T ss_pred cccccCCccccchhhcCCcccchhccccccccCCcccccCchhhcc---CCcEEEEechhhCCH--------------HH
Confidence 7531 11111110000 00112222 235999999999743 23
Q ss_pred HHHHHHhhcCC---------------------------CCCCcEEEEecCCCCCCCCccCCCCCccceEEeecCCCHHHH
Q 004267 605 LNQLLTEMDGM---------------------------SAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSR 657 (764)
Q Consensus 605 ~~~lL~~ld~~---------------------------~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r 657 (764)
.+.||..|+.. .+.+..+|.+|||.|+.|+|++++ |+. .++|++++.+++
T Consensus 192 q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~~-~I~f~pL~~eei 268 (531)
T TIGR02902 192 MNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RCV-EIFFRPLLDEEI 268 (531)
T ss_pred HHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hhh-eeeCCCCCHHHH
Confidence 45555444321 012234566777889999999998 885 788999999999
Q ss_pred HHHHHHHhccCCCC-CcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCCCccccccccccccccc
Q 004267 658 HQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRRDNPEAMDEDAAEDEVSEI 736 (764)
Q Consensus 658 ~~Il~~~~~~~~~~-~~~~l~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 736 (764)
..|++..+++..+. ++.-++.++.++ ++++++.++++.|+..|..+. ...|
T Consensus 269 ~~Il~~~a~k~~i~is~~al~~I~~y~--~n~Rel~nll~~Aa~~A~~~~--------------------------~~~I 320 (531)
T TIGR02902 269 KEIAKNAAEKIGINLEKHALELIVKYA--SNGREAVNIVQLAAGIALGEG--------------------------RKRI 320 (531)
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhhCC--------------------------CcEE
Confidence 99999999876644 223356666655 389999999999998776532 1369
Q ss_pred cHHHHHHHHHh
Q 004267 737 KAAHFEESMKF 747 (764)
Q Consensus 737 ~~~~f~~a~~~ 747 (764)
+.+|++.++..
T Consensus 321 t~~dI~~vl~~ 331 (531)
T TIGR02902 321 LAEDIEWVAEN 331 (531)
T ss_pred cHHHHHHHhCC
Confidence 99999999874
No 110
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.55 E-value=1.9e-13 Score=146.74 Aligned_cols=188 Identities=23% Similarity=0.347 Sum_probs=131.6
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhhhhccch
Q 004267 206 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGE 285 (764)
Q Consensus 206 ~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~~g~ 285 (764)
+|+++.|.++.+++++.++......+ ..+.+++|+||||||||+|++++|.+++..+..++++....
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~~--------~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~----- 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMRQ--------EALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK----- 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhcC--------CCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC-----
Confidence 57899999999999988886432211 34567999999999999999999999988776666543321
Q ss_pred hHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhccc----------------CCCeEEEEE
Q 004267 286 SESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK----------------SRAHVIVIG 349 (764)
Q Consensus 286 ~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~----------------~~~~v~vI~ 349 (764)
...+...+... ..+.++||||++.+.+.. .+.|.+.|+... ..+++++|+
T Consensus 69 -~~~l~~~l~~~--~~~~vl~iDEi~~l~~~~-----------~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~ 134 (305)
T TIGR00635 69 -PGDLAAILTNL--EEGDVLFIDEIHRLSPAV-----------EELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVG 134 (305)
T ss_pred -chhHHHHHHhc--ccCCEEEEehHhhhCHHH-----------HHHhhHHHhhhheeeeeccCccccceeecCCCeEEEE
Confidence 11222233222 346799999999885421 122444443221 123478899
Q ss_pred ecCCCCCCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCC-CchhhhHHhhhcCCCchHHHHHHHHHHH
Q 004267 350 ATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTEAA 423 (764)
Q Consensus 350 atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~a~ 423 (764)
+|+++..+++++++ ||...+.+..|+.++..++++......... ++..+..+++.+.|+. ..+..++..+.
T Consensus 135 ~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~p-R~~~~ll~~~~ 206 (305)
T TIGR00635 135 ATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTP-RIANRLLRRVR 206 (305)
T ss_pred ecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc-chHHHHHHHHH
Confidence 99999999999987 898888999999999999998776543332 3345788999998876 34455555443
No 111
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.55 E-value=6.5e-14 Score=150.40 Aligned_cols=176 Identities=27% Similarity=0.418 Sum_probs=127.6
Q ss_pred ccccchhhhhcccceeeccCCChhhhhhc-cCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccch-hcccC-c
Q 004267 482 DIGGLENVKRELQETVQYPVEHPEKFEKF-GMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-TMWFG-E 558 (764)
Q Consensus 482 ~i~g~~~~k~~l~~~v~~~~~~~~~~~~~-~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~-~~~~g-~ 558 (764)
.|.|++++|+.+...+............+ .-.+++++||+||||||||++|+++|..++.+|+.+++.++. ..|+| +
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 47899999888765544211111100000 112457899999999999999999999999999999999887 47999 6
Q ss_pred chHHHHHHHHHHh-------------------------------------------------------------------
Q 004267 559 SEANVREIFDKAR------------------------------------------------------------------- 571 (764)
Q Consensus 559 se~~i~~~f~~a~------------------------------------------------------------------- 571 (764)
.+..++.+|+.|.
T Consensus 93 vE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 172 (441)
T TIGR00390 93 VESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEI 172 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEE
Confidence 7788888887760
Q ss_pred ------------------------------------------------------------------------hCCCeEEE
Q 004267 572 ------------------------------------------------------------------------QSAPCVLF 579 (764)
Q Consensus 572 ------------------------------------------------------------------------~~~p~iif 579 (764)
.....|+|
T Consensus 173 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVf 252 (441)
T TIGR00390 173 DVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIF 252 (441)
T ss_pred eecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 01235999
Q ss_pred EecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCC--------CCCcEEEEecCC----CCCCCCccCCCCCccceEE
Q 004267 580 FDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS--------AKKTVFIIGATN----RPDIIDPALLRPGRLDQLI 647 (764)
Q Consensus 580 iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~--------~~~~v~vi~aTn----~~~~ld~allrpgRf~~~i 647 (764)
+||||.++.+.++...+ -...-|-..||..|+|-. ..+++++||+.. .|+.|=|.|. |||..++
T Consensus 253 iDEiDKIa~~~~~~~~D--vS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v 328 (441)
T TIGR00390 253 IDEIDKIAKKGESSGAD--VSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQ--GRFPIRV 328 (441)
T ss_pred EEchhhhcccCCCCCCC--CCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHh--CccceEE
Confidence 99999999765332222 233457888999999842 346788888764 3555555554 7999999
Q ss_pred eecCCCHHHHHHHH
Q 004267 648 YIPLPDEDSRHQIF 661 (764)
Q Consensus 648 ~~~~p~~~~r~~Il 661 (764)
.+.+++.++..+||
T Consensus 329 ~L~~L~~edL~rIL 342 (441)
T TIGR00390 329 ELQALTTDDFERIL 342 (441)
T ss_pred ECCCCCHHHHHHHh
Confidence 99999999999988
No 112
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=6.3e-14 Score=156.91 Aligned_cols=182 Identities=19% Similarity=0.306 Sum_probs=128.7
Q ss_pred ccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCC----------------
Q 004267 478 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA---------------- 541 (764)
Q Consensus 478 v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~---------------- 541 (764)
.+|+++.|++++++.|...+... +.+.++||+|||||||||+|+++|..++.
T Consensus 11 ~~~~divGq~~i~~~L~~~i~~~------------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~ 78 (472)
T PRK14962 11 KTFSEVVGQDHVKKLIINALKKN------------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACR 78 (472)
T ss_pred CCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHH
Confidence 46899999999988777654321 23456999999999999999999998654
Q ss_pred --------eeEEEecccchhcccCcchHHHHHHHHHHhhC----CCeEEEEecccchhhccCCCCCCCCcchHHHHHHHH
Q 004267 542 --------NFISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLL 609 (764)
Q Consensus 542 --------~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~----~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL 609 (764)
.++.++++. ..+-..+|.+.+.+... ...|+|+||+|.+.. ...+.||
T Consensus 79 ~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~--------------~a~~~LL 138 (472)
T PRK14962 79 SIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTK--------------EAFNALL 138 (472)
T ss_pred HHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHH--------------HHHHHHH
Confidence 345554432 11234567776665533 346999999998742 3457788
Q ss_pred HhhcCCCCCCcEEEEecCCCCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCCCCH
Q 004267 610 TEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS-KDVDLRALAKYTQGFSG 688 (764)
Q Consensus 610 ~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~~g~sg 688 (764)
..|+.. ...+++|++|+.++.+++++.+ |+. .+.|++|+.++...+++..++..++. ++..+..|++.+.| +.
T Consensus 139 k~LE~p--~~~vv~Ilattn~~kl~~~L~S--R~~-vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~G-dl 212 (472)
T PRK14962 139 KTLEEP--PSHVVFVLATTNLEKVPPTIIS--RCQ-VIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASG-GL 212 (472)
T ss_pred HHHHhC--CCcEEEEEEeCChHhhhHHHhc--CcE-EEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC-CH
Confidence 888753 3456666677678899999988 885 89999999999999999888665443 23346778877654 55
Q ss_pred HHHHHHHHH
Q 004267 689 ADITEICQR 697 (764)
Q Consensus 689 ~di~~~~~~ 697 (764)
+++.+.+..
T Consensus 213 R~aln~Le~ 221 (472)
T PRK14962 213 RDALTMLEQ 221 (472)
T ss_pred HHHHHHHHH
Confidence 555555544
No 113
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=4.6e-14 Score=157.22 Aligned_cols=164 Identities=28% Similarity=0.393 Sum_probs=127.7
Q ss_pred cccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccch--------
Q 004267 481 EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-------- 552 (764)
Q Consensus 481 ~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~-------- 552 (764)
.|-.|++.+|+++.+++...... +-....-+||+||||+|||+|++.+|..++..|+.++-.-+.
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~-------~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGH 395 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLT-------KKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGH 395 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHh-------ccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccc
Confidence 45679999999998876532211 111122389999999999999999999999999998754332
Q ss_pred -hcccCcchHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhc---------CC----CCC
Q 004267 553 -TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMD---------GM----SAK 618 (764)
Q Consensus 553 -~~~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld---------~~----~~~ 618 (764)
..|+|.-...+-+-+.+|....| ++++||||.+...- .++.. +.||..|| .+ .+.
T Consensus 396 RRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~---rGDPa-------SALLEVLDPEQN~~F~DhYLev~yDL 464 (782)
T COG0466 396 RRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSF---RGDPA-------SALLEVLDPEQNNTFSDHYLEVPYDL 464 (782)
T ss_pred cccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCC---CCChH-------HHHHhhcCHhhcCchhhccccCccch
Confidence 35899999999999999998888 99999999987531 12211 23444443 11 245
Q ss_pred CcEEEEecCCCCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHh
Q 004267 619 KTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACL 665 (764)
Q Consensus 619 ~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~ 665 (764)
++|++|+|.|..+.|+.+|+- |+. +|.++-++.++..+|-+.|+
T Consensus 465 S~VmFiaTANsl~tIP~PLlD--RME-iI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 465 SKVMFIATANSLDTIPAPLLD--RME-VIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred hheEEEeecCccccCChHHhc--cee-eeeecCCChHHHHHHHHHhc
Confidence 789999999999999999998 996 99999999999999999988
No 114
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=6.2e-14 Score=154.29 Aligned_cols=184 Identities=21% Similarity=0.285 Sum_probs=132.0
Q ss_pred ccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCe---------------
Q 004267 478 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN--------------- 542 (764)
Q Consensus 478 v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~--------------- 542 (764)
.+|+++.|++.+.+.|...+.. + +.+..+||+||+||||||+|+++|..++..
T Consensus 15 ~~f~dvVGQe~iv~~L~~~i~~-----------~-ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~ 82 (484)
T PRK14956 15 QFFRDVIHQDLAIGALQNALKS-----------G-KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCL 82 (484)
T ss_pred CCHHHHhChHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHH
Confidence 4689999999999887765432 1 233458999999999999999999987542
Q ss_pred ---------eEEEecccchhcccCcchHHHHHHHHHHh----hCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHH
Q 004267 543 ---------FISVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLL 609 (764)
Q Consensus 543 ---------~i~v~~~~l~~~~~g~se~~i~~~f~~a~----~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL 609 (764)
++.+++.. ..+...+|++.+.+. .....|+||||+|.+. ....+.||
T Consensus 83 ~i~~g~~~dviEIdaas------~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls--------------~~A~NALL 142 (484)
T PRK14956 83 EITKGISSDVLEIDAAS------NRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLT--------------DQSFNALL 142 (484)
T ss_pred HHHccCCccceeechhh------cccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcC--------------HHHHHHHH
Confidence 33333221 112345666655544 3346799999999973 34678888
Q ss_pred HhhcCCCCCCcEEEEecCCCCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCCCCH
Q 004267 610 TEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS-KDVDLRALAKYTQGFSG 688 (764)
Q Consensus 610 ~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~~g~sg 688 (764)
..|+. +...+++|++|+.++.|.+++++ |+. .++|.+++.++..+.++..+.+.++. ++..+..+|+.++| +.
T Consensus 143 KtLEE--Pp~~viFILaTte~~kI~~TI~S--RCq-~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~G-d~ 216 (484)
T PRK14956 143 KTLEE--PPAHIVFILATTEFHKIPETILS--RCQ-DFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDG-SV 216 (484)
T ss_pred HHhhc--CCCceEEEeecCChhhccHHHHh--hhh-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-hH
Confidence 88875 44578888888889999999998 885 78899898888888888888766554 33346777777765 66
Q ss_pred HHHHHHHHHHH
Q 004267 689 ADITEICQRAC 699 (764)
Q Consensus 689 ~di~~~~~~a~ 699 (764)
++..+++..+.
T Consensus 217 RdAL~lLeq~i 227 (484)
T PRK14956 217 RDMLSFMEQAI 227 (484)
T ss_pred HHHHHHHHHHH
Confidence 66666665544
No 115
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.53 E-value=8.5e-14 Score=158.38 Aligned_cols=186 Identities=22% Similarity=0.322 Sum_probs=136.8
Q ss_pred ccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCC----------------
Q 004267 478 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA---------------- 541 (764)
Q Consensus 478 v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~---------------- 541 (764)
-+|++|.|++++++.|+..+.. + +.+..+||+||+||||||+|+++|+.+++
T Consensus 13 qtFdEVIGQe~Vv~~L~~aL~~-----------g-RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr 80 (830)
T PRK07003 13 KDFASLVGQEHVVRALTHALDG-----------G-RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACR 80 (830)
T ss_pred CcHHHHcCcHHHHHHHHHHHhc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHH
Confidence 4689999999999988876542 1 23445899999999999999999998753
Q ss_pred --------eeEEEecccchhcccCcchHHHHHHHHHHhh----CCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHH
Q 004267 542 --------NFISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLL 609 (764)
Q Consensus 542 --------~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~----~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL 609 (764)
.++.++..+ ..+...++++.+.+.. ....|+||||+|.|. ....|.||
T Consensus 81 ~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT--------------~~A~NALL 140 (830)
T PRK07003 81 EIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLT--------------NHAFNAML 140 (830)
T ss_pred HHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhCC--------------HHHHHHHH
Confidence 233333321 1223456777776543 345799999999973 23467888
Q ss_pred HhhcCCCCCCcEEEEecCCCCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCCCCH
Q 004267 610 TEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS-KDVDLRALAKYTQGFSG 688 (764)
Q Consensus 610 ~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~~g~sg 688 (764)
..|+.. ..++.+|++||.++.|.+.+++ |+ ..+.|..++.++..+.|+..+++.++. ++..+..|++..+| +.
T Consensus 141 KtLEEP--P~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~G-sm 214 (830)
T PRK07003 141 KTLEEP--PPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQG-SM 214 (830)
T ss_pred HHHHhc--CCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 888853 4477888888889999999987 88 589999999999999999888766654 33447778888775 67
Q ss_pred HHHHHHHHHHHHH
Q 004267 689 ADITEICQRACKY 701 (764)
Q Consensus 689 ~di~~~~~~a~~~ 701 (764)
++..+++..+...
T Consensus 215 RdALsLLdQAia~ 227 (830)
T PRK07003 215 RDALSLTDQAIAY 227 (830)
T ss_pred HHHHHHHHHHHHh
Confidence 7777777666643
No 116
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.53 E-value=4.9e-14 Score=154.20 Aligned_cols=191 Identities=22% Similarity=0.346 Sum_probs=129.6
Q ss_pred cccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCee---------------
Q 004267 479 SWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANF--------------- 543 (764)
Q Consensus 479 ~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~--------------- 543 (764)
.|++|+|++.+++.|++.+..+..+. ..++...+.++||+||||+|||++|+++|..+....
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~---~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~ 79 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADV---AAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTV 79 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccc---cccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Confidence 48999999999999998887654332 223444567799999999999999999998653321
Q ss_pred EEEecccch--hc-ccCcchHHHHHHHHHHhhC----CCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCC
Q 004267 544 ISVKGPELL--TM-WFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS 616 (764)
Q Consensus 544 i~v~~~~l~--~~-~~g~se~~i~~~f~~a~~~----~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~ 616 (764)
..-+-+++. .. -..-.-..||.+++.+... ...|+||||+|.+.. ...|.||..|+..
T Consensus 80 ~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~--------------~aanaLLk~LEep- 144 (394)
T PRK07940 80 LAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTE--------------RAANALLKAVEEP- 144 (394)
T ss_pred hcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCH--------------HHHHHHHHHhhcC-
Confidence 000111110 00 0011234588888877653 346999999999743 2357788888753
Q ss_pred CCCcEEEEecCCCCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHH
Q 004267 617 AKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEIC 695 (764)
Q Consensus 617 ~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~sg~di~~~~ 695 (764)
+.+.++|++||| ++.+.|.+++ |+ ..++|++|+.++..+.+... .++. ......++..+.|..|..+.-+.
T Consensus 145 ~~~~~fIL~a~~-~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~---~~~~-~~~a~~la~~s~G~~~~A~~l~~ 215 (394)
T PRK07940 145 PPRTVWLLCAPS-PEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRR---DGVD-PETARRAARASQGHIGRARRLAT 215 (394)
T ss_pred CCCCeEEEEECC-hHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHh---cCCC-HHHHHHHHHHcCCCHHHHHHHhc
Confidence 233455555555 8999999998 88 59999999999887777632 2333 34466788899998887665443
No 117
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.53 E-value=2e-13 Score=143.17 Aligned_cols=176 Identities=30% Similarity=0.474 Sum_probs=123.7
Q ss_pred cCCCCCcccccChHHHHH---HHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechh
Q 004267 201 RLDEVGYDDVGGVRKQMA---QIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPE 277 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~---~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~ 277 (764)
.+.+-+++++.|+++.+. -|+.+++. ..-.+++|||||||||||||+.||+.++..|..+++..
T Consensus 17 rmRP~~lde~vGQ~HLlg~~~~lrr~v~~-------------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~ 83 (436)
T COG2256 17 RLRPKSLDEVVGQEHLLGEGKPLRRAVEA-------------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT 83 (436)
T ss_pred HhCCCCHHHhcChHhhhCCCchHHHHHhc-------------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc
Confidence 456678999999998763 35666654 23457999999999999999999999999999998643
Q ss_pred hhhhccchhHHHHHHHHHHHHhcC----CeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecC-
Q 004267 278 IMSKLAGESESNLRKAFEEAEKNA----PSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATN- 352 (764)
Q Consensus 278 l~~~~~g~~~~~l~~vf~~a~~~~----p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn- 352 (764)
..-+.++.++++++... ..|||+||||.+-...+ ..|+..+ .++.+++||+|.
T Consensus 84 -------~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQ-----------D~lLp~v----E~G~iilIGATTE 141 (436)
T COG2256 84 -------SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQ-----------DALLPHV----ENGTIILIGATTE 141 (436)
T ss_pred -------ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhh-----------hhhhhhh----cCCeEEEEeccCC
Confidence 23567899999996533 48999999998854432 3455544 356788887654
Q ss_pred CC-CCCChhhhccCCcceEEEecCCChHHHHHHHHHHh--cCCCCC------CchhhhHHhhhcCCCchHH
Q 004267 353 RP-NSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHT--KNMKLS------DDVDLERIAKDTHGYVGAD 414 (764)
Q Consensus 353 ~~-~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~--~~~~l~------~~~~l~~la~~t~g~~~~d 414 (764)
+| -.+.++|++ |. +.+++...+.++-.++++..+ ..-.+. ++.-+..++..+.|-..+-
T Consensus 142 NPsF~ln~ALlS--R~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~a 209 (436)
T COG2256 142 NPSFELNPALLS--RA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRA 209 (436)
T ss_pred CCCeeecHHHhh--hh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHH
Confidence 44 478999998 54 457888888888777776522 111121 2334566677676644433
No 118
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.52 E-value=2e-13 Score=150.44 Aligned_cols=221 Identities=23% Similarity=0.302 Sum_probs=139.6
Q ss_pred cccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhC---------CeeEEEecccc
Q 004267 481 EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ---------ANFISVKGPEL 551 (764)
Q Consensus 481 ~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~---------~~~i~v~~~~l 551 (764)
+++.|-+...+.|...+..... + ..+.+++++||||||||+++++++.++. ..++.+++...
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~--------~-~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~ 85 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILR--------G-SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQIL 85 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHc--------C-CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCC
Confidence 4566776666666554332111 1 2345699999999999999999998642 46788887554
Q ss_pred hhc----------cc--Cc-------c-hHHHHHHHHHHh-hCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHH
Q 004267 552 LTM----------WF--GE-------S-EANVREIFDKAR-QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLT 610 (764)
Q Consensus 552 ~~~----------~~--g~-------s-e~~i~~~f~~a~-~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~ 610 (764)
.+. .. |. + .+....+++... ...+.|++|||+|.+... ...++.+|+.
T Consensus 86 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~-----------~~~~L~~l~~ 154 (365)
T TIGR02928 86 DTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGD-----------DDDLLYQLSR 154 (365)
T ss_pred CCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccC-----------CcHHHHhHhc
Confidence 221 11 11 1 223445555443 345679999999999721 1235566655
Q ss_pred hhcCC-CCCCcEEEEecCCCCC---CCCccCCCCCccc-eEEeecCCCHHHHHHHHHHHhccC---CCCCcccHHHHHH-
Q 004267 611 EMDGM-SAKKTVFIIGATNRPD---IIDPALLRPGRLD-QLIYIPLPDEDSRHQIFKACLRKS---PVSKDVDLRALAK- 681 (764)
Q Consensus 611 ~ld~~-~~~~~v~vi~aTn~~~---~ld~allrpgRf~-~~i~~~~p~~~~r~~Il~~~~~~~---~~~~~~~l~~la~- 681 (764)
..+.. ....++.+|++||.++ .+++.+.+ ||. ..++|++++.++..+|++..++.. ..-.+.-++.++.
T Consensus 155 ~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~ 232 (365)
T TIGR02928 155 ARSNGDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAAL 232 (365)
T ss_pred cccccCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHH
Confidence 42211 1235788999999886 47788776 774 789999999999999999988631 1112222333333
Q ss_pred --HCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCCCccccccccccccccccHHHHHHHHHhcCC
Q 004267 682 --YTQGFSGADITEICQRACKYAIRENIEKDIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARR 750 (764)
Q Consensus 682 --~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~ 750 (764)
.+.| ..+.+.++|+.|+..|..+. ...|+.+|+++|+..+..
T Consensus 233 ~~~~~G-d~R~al~~l~~a~~~a~~~~--------------------------~~~it~~~v~~a~~~~~~ 276 (365)
T TIGR02928 233 AAQEHG-DARKAIDLLRVAGEIAEREG--------------------------AERVTEDHVEKAQEKIEK 276 (365)
T ss_pred HHHhcC-CHHHHHHHHHHHHHHHHHcC--------------------------CCCCCHHHHHHHHHHHHH
Confidence 3334 45566678888887776543 235888888888777643
No 119
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.52 E-value=1.6e-13 Score=153.04 Aligned_cols=181 Identities=27% Similarity=0.435 Sum_probs=126.7
Q ss_pred ccccccccchhhhhc---ccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccchhc
Q 004267 478 VSWEDIGGLENVKRE---LQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM 554 (764)
Q Consensus 478 v~~~~i~g~~~~k~~---l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~~~ 554 (764)
-+++++.|++++... |.+.+.. ....+++|+||||||||++|+++|...+..|+.+++..
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~~-------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~---- 71 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIEA-------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVT---- 71 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHHc-------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccc----
Confidence 346788888877554 5444321 12346999999999999999999999999999988753
Q ss_pred ccCcchHHHHHHHHHHhh----CCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecC--C
Q 004267 555 WFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGAT--N 628 (764)
Q Consensus 555 ~~g~se~~i~~~f~~a~~----~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aT--n 628 (764)
.+...++.+++.+.. ....++||||+|.+.. ...+.|+..|+. ..+++|++| |
T Consensus 72 ---~~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~--------------~~q~~LL~~le~----~~iilI~att~n 130 (413)
T PRK13342 72 ---SGVKDLREVIEEARQRRSAGRRTILFIDEIHRFNK--------------AQQDALLPHVED----GTITLIGATTEN 130 (413)
T ss_pred ---ccHHHHHHHHHHHHHhhhcCCceEEEEechhhhCH--------------HHHHHHHHHhhc----CcEEEEEeCCCC
Confidence 234556777776642 3567999999998743 223556666653 345666655 4
Q ss_pred CCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccC--CC-C-CcccHHHHHHHCCCCCHHHHHHHHHHHHH
Q 004267 629 RPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKS--PV-S-KDVDLRALAKYTQGFSGADITEICQRACK 700 (764)
Q Consensus 629 ~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~--~~-~-~~~~l~~la~~~~g~sg~di~~~~~~a~~ 700 (764)
....+++++++ |+ .++.|++++.++...+++..+... ++ . .+..+..+++.+. .+.+.+.+++..+..
T Consensus 131 ~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~-Gd~R~aln~Le~~~~ 202 (413)
T PRK13342 131 PSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLAN-GDARRALNLLELAAL 202 (413)
T ss_pred hhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence 45588999998 88 689999999999999999887542 11 1 2233567777774 466777777766653
No 120
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.52 E-value=9.1e-14 Score=149.37 Aligned_cols=177 Identities=25% Similarity=0.408 Sum_probs=128.7
Q ss_pred cccccchhhhhcccceeeccCCChhhhhhccC-CCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccchh-cccC-
Q 004267 481 EDIGGLENVKRELQETVQYPVEHPEKFEKFGM-SPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT-MWFG- 557 (764)
Q Consensus 481 ~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~-~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~~-~~~g- 557 (764)
..|.|++.+++.+...+............... ..+.++||+||||||||++|+++|..++.+|+.++++++.. .|+|
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~ 94 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGR 94 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccC
Confidence 34889999999887665321111100000000 12477999999999999999999999999999999998885 7999
Q ss_pred cchHHHHHHHHHHh------------------------------------------------------------------
Q 004267 558 ESEANVREIFDKAR------------------------------------------------------------------ 571 (764)
Q Consensus 558 ~se~~i~~~f~~a~------------------------------------------------------------------ 571 (764)
+.+..++.+|+.|.
T Consensus 95 d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~ie 174 (443)
T PRK05201 95 DVESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIE 174 (443)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEE
Confidence 55778888887771
Q ss_pred ----h--------------------------------------------------------------------CCCeEEE
Q 004267 572 ----Q--------------------------------------------------------------------SAPCVLF 579 (764)
Q Consensus 572 ----~--------------------------------------------------------------------~~p~iif 579 (764)
. ..-.|+|
T Consensus 175 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVf 254 (443)
T PRK05201 175 IEVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVF 254 (443)
T ss_pred EEecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 0 1224999
Q ss_pred EecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCC--------CCCcEEEEecCC----CCCCCCccCCCCCccceEE
Q 004267 580 FDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS--------AKKTVFIIGATN----RPDIIDPALLRPGRLDQLI 647 (764)
Q Consensus 580 iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~--------~~~~v~vi~aTn----~~~~ld~allrpgRf~~~i 647 (764)
+||||.++...+++..+ -...-|-..||..|+|-. +.+++++||+-. .|+.|-|.|. |||..++
T Consensus 255 iDEiDKIa~~~~~~~~D--vS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v 330 (443)
T PRK05201 255 IDEIDKIAARGGSSGPD--VSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQ--GRFPIRV 330 (443)
T ss_pred EEcchhhcccCCCCCCC--CCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHh--CccceEE
Confidence 99999999875432222 233457888999999842 346788888763 4566667776 7999999
Q ss_pred eecCCCHHHHHHHH
Q 004267 648 YIPLPDEDSRHQIF 661 (764)
Q Consensus 648 ~~~~p~~~~r~~Il 661 (764)
.+.+++.++..+||
T Consensus 331 ~L~~L~~~dL~~IL 344 (443)
T PRK05201 331 ELDALTEEDFVRIL 344 (443)
T ss_pred ECCCCCHHHHHHHh
Confidence 99999999999988
No 121
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.52 E-value=6e-14 Score=169.22 Aligned_cols=198 Identities=20% Similarity=0.342 Sum_probs=140.0
Q ss_pred cccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHh----------CCeeEEEec
Q 004267 479 SWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISVKG 548 (764)
Q Consensus 479 ~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~----------~~~~i~v~~ 548 (764)
.++.+.|.++..+.+.+.+ ..+...+++|+||||||||++++++|... +.+++.++.
T Consensus 171 ~~~~~igr~~ei~~~~~~l-------------~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~ 237 (852)
T TIGR03346 171 KLDPVIGRDEEIRRTIQVL-------------SRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDM 237 (852)
T ss_pred CCCcCCCcHHHHHHHHHHH-------------hcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeH
Confidence 3556677766544333321 22334568999999999999999999975 567888887
Q ss_pred ccch--hcccCcchHHHHHHHHHHhhC-CCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEe
Q 004267 549 PELL--TMWFGESEANVREIFDKARQS-APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIG 625 (764)
Q Consensus 549 ~~l~--~~~~g~se~~i~~~f~~a~~~-~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~ 625 (764)
..++ .+|.|+.++.++.+|+.+... .++|||||||+.+.+.++.. +. ..+.+.|...+ ..+.+.+|+
T Consensus 238 ~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~-----~~-~d~~~~Lk~~l----~~g~i~~Ig 307 (852)
T TIGR03346 238 GALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAE-----GA-MDAGNMLKPAL----ARGELHCIG 307 (852)
T ss_pred HHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCc-----ch-hHHHHHhchhh----hcCceEEEE
Confidence 7775 578999999999999998654 58999999999998654321 11 12333333322 456789999
Q ss_pred cCCCCC-----CCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCCC-----cccHHHHHHHCCCCC-----HHH
Q 004267 626 ATNRPD-----IIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSK-----DVDLRALAKYTQGFS-----GAD 690 (764)
Q Consensus 626 aTn~~~-----~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~-----~~~l~~la~~~~g~s-----g~d 690 (764)
+|+..+ .+|+++.| ||. .|+++.|+.+++..|++.+..+..... +..+...+..+.+|- +.-
T Consensus 308 aTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPdk 384 (852)
T TIGR03346 308 ATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDK 384 (852)
T ss_pred eCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCchH
Confidence 998864 57999999 997 589999999999999998876654432 334566666665553 334
Q ss_pred HHHHHHHHHHHH
Q 004267 691 ITEICQRACKYA 702 (764)
Q Consensus 691 i~~~~~~a~~~a 702 (764)
.-.++.+|+..+
T Consensus 385 Aidlld~a~a~~ 396 (852)
T TIGR03346 385 AIDLIDEAAARI 396 (852)
T ss_pred HHHHHHHHHHHH
Confidence 445667766543
No 122
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=3.6e-14 Score=159.53 Aligned_cols=184 Identities=23% Similarity=0.339 Sum_probs=134.9
Q ss_pred ccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCC----------------
Q 004267 478 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA---------------- 541 (764)
Q Consensus 478 v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~---------------- 541 (764)
.+|++|+|++++++.|.+.+... +.+..+||+||+|+||||+|+.+|+.+.+
T Consensus 13 qtFddVIGQe~vv~~L~~al~~g------------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~ 80 (700)
T PRK12323 13 RDFTTLVGQEHVVRALTHALEQQ------------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQ 80 (700)
T ss_pred CcHHHHcCcHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcc
Confidence 46899999999999888765421 23445899999999999999999998754
Q ss_pred -------------eeEEEecccchhcccCcchHHHHHHHHHHh----hCCCeEEEEecccchhhccCCCCCCCCcchHHH
Q 004267 542 -------------NFISVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRV 604 (764)
Q Consensus 542 -------------~~i~v~~~~l~~~~~g~se~~i~~~f~~a~----~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~ 604 (764)
.++.+++.. ..+-..+|++.+.+. .....|+||||+|.|. ...
T Consensus 81 C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls--------------~~A 140 (700)
T PRK12323 81 CRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT--------------NHA 140 (700)
T ss_pred cHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC--------------HHH
Confidence 223333221 112345677766654 3346799999999973 245
Q ss_pred HHHHHHhhcCCCCCCcEEEEecCCCCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCCCcc-cHHHHHHHC
Q 004267 605 LNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDV-DLRALAKYT 683 (764)
Q Consensus 605 ~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~-~l~~la~~~ 683 (764)
.|.||..|+. ...++++|++||.++.|.+.+++ |+ ..+.|..++.++..+.++..+.+.++..+. .+..+++.+
T Consensus 141 aNALLKTLEE--PP~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A 215 (700)
T PRK12323 141 FNAMLKTLEE--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAA 215 (700)
T ss_pred HHHHHHhhcc--CCCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 6889998885 34577888888889999999997 88 589999999999999888887665554332 366777777
Q ss_pred CCCCHHHHHHHHHHHH
Q 004267 684 QGFSGADITEICQRAC 699 (764)
Q Consensus 684 ~g~sg~di~~~~~~a~ 699 (764)
+| +.++..+++..+.
T Consensus 216 ~G-s~RdALsLLdQai 230 (700)
T PRK12323 216 QG-SMRDALSLTDQAI 230 (700)
T ss_pred CC-CHHHHHHHHHHHH
Confidence 64 7777777776544
No 123
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.52 E-value=6.1e-14 Score=168.70 Aligned_cols=198 Identities=24% Similarity=0.350 Sum_probs=142.2
Q ss_pred cccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHh----------CCeeEEEec
Q 004267 479 SWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISVKG 548 (764)
Q Consensus 479 ~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~----------~~~~i~v~~ 548 (764)
.|+.+.|.+...+.+.+.+. .+...+++|+||||||||++|+.+|... +..++.++.
T Consensus 177 ~~~~~igr~~ei~~~~~~L~-------------r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~ 243 (821)
T CHL00095 177 NLDPVIGREKEIERVIQILG-------------RRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDI 243 (821)
T ss_pred CCCCCCCcHHHHHHHHHHHc-------------ccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeH
Confidence 46677777766665554432 2345679999999999999999999975 367899998
Q ss_pred ccch--hcccCcchHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEec
Q 004267 549 PELL--TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGA 626 (764)
Q Consensus 549 ~~l~--~~~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~a 626 (764)
..++ .+|.|+.++.++.+|+.+....++|||||||+.+.+.++.. ++ . .+-+.|...+ ..+.+.+|++
T Consensus 244 ~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~-g~--~---~~a~lLkp~l----~rg~l~~Iga 313 (821)
T CHL00095 244 GLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAE-GA--I---DAANILKPAL----ARGELQCIGA 313 (821)
T ss_pred HHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCC-Cc--c---cHHHHhHHHH----hCCCcEEEEe
Confidence 8887 58899999999999999988888999999999998765322 11 1 1222232233 3567889999
Q ss_pred CCCCC-----CCCccCCCCCccceEEeecCCCHHHHHHHHHHHhcc----CCCC-CcccHHHHHHHCCCCCH-----HHH
Q 004267 627 TNRPD-----IIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRK----SPVS-KDVDLRALAKYTQGFSG-----ADI 691 (764)
Q Consensus 627 Tn~~~-----~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~----~~~~-~~~~l~~la~~~~g~sg-----~di 691 (764)
|+..+ ..||++.| ||. .|.++.|+.++...|++..... ..+. ++.-+..++..+.+|.+ ...
T Consensus 314 Tt~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~lPdka 390 (821)
T CHL00095 314 TTLDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPDKA 390 (821)
T ss_pred CCHHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccCchHH
Confidence 98764 57999999 997 5899999999999998765422 2222 33346677777766543 344
Q ss_pred HHHHHHHHHHH
Q 004267 692 TEICQRACKYA 702 (764)
Q Consensus 692 ~~~~~~a~~~a 702 (764)
-.++.+|+...
T Consensus 391 idlld~a~a~~ 401 (821)
T CHL00095 391 IDLLDEAGSRV 401 (821)
T ss_pred HHHHHHHHHHH
Confidence 45666666543
No 124
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=1.9e-13 Score=149.75 Aligned_cols=185 Identities=22% Similarity=0.314 Sum_probs=131.6
Q ss_pred ccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCe---------------
Q 004267 478 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN--------------- 542 (764)
Q Consensus 478 v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~--------------- 542 (764)
.+|+++.|++.+++.+...+.. + +.+..++|+||||+||||+|+++|+.+...
T Consensus 13 ~~~~~iiGq~~~~~~l~~~~~~-----------~-~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~ 80 (363)
T PRK14961 13 QYFRDIIGQKHIVTAISNGLSL-----------G-RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICK 80 (363)
T ss_pred CchhhccChHHHHHHHHHHHHc-----------C-CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHH
Confidence 5689999999999988765432 1 234458999999999999999999987531
Q ss_pred ---------eEEEecccchhcccCcchHHHHHHHHHHhhC----CCeEEEEecccchhhccCCCCCCCCcchHHHHHHHH
Q 004267 543 ---------FISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLL 609 (764)
Q Consensus 543 ---------~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~----~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL 609 (764)
++.++++. ...-..++.+.+.+... ...|+||||+|.+. ....+.||
T Consensus 81 ~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~--------------~~a~naLL 140 (363)
T PRK14961 81 EIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS--------------RHSFNALL 140 (363)
T ss_pred HHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcC--------------HHHHHHHH
Confidence 22222211 12234577777665432 34699999999863 23456788
Q ss_pred HhhcCCCCCCcEEEEecCCCCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCCCCH
Q 004267 610 TEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS-KDVDLRALAKYTQGFSG 688 (764)
Q Consensus 610 ~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~~g~sg 688 (764)
..|+.. ...+.+|++|+.++.+.+++.+ |+ ..+.|++|+.++..++++..+++.++. ++..+..++..+.| +.
T Consensus 141 k~lEe~--~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G-~~ 214 (363)
T PRK14961 141 KTLEEP--PQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG-SM 214 (363)
T ss_pred HHHhcC--CCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 888764 3456666677778888888876 87 589999999999999999888776543 33456778887765 77
Q ss_pred HHHHHHHHHHHH
Q 004267 689 ADITEICQRACK 700 (764)
Q Consensus 689 ~di~~~~~~a~~ 700 (764)
+++.+++..++.
T Consensus 215 R~al~~l~~~~~ 226 (363)
T PRK14961 215 RDALNLLEHAIN 226 (363)
T ss_pred HHHHHHHHHHHH
Confidence 887777776653
No 125
>PRK04195 replication factor C large subunit; Provisional
Probab=99.50 E-value=1.5e-13 Score=156.09 Aligned_cols=188 Identities=25% Similarity=0.331 Sum_probs=131.2
Q ss_pred ccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccchhcccC
Q 004267 478 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFG 557 (764)
Q Consensus 478 v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~~~~~g 557 (764)
.+++++.|.+.+++.|..++..... | .+++++||+||||||||++|+++|++++..++.+++++..+
T Consensus 11 ~~l~dlvg~~~~~~~l~~~l~~~~~--------g-~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~---- 77 (482)
T PRK04195 11 KTLSDVVGNEKAKEQLREWIESWLK--------G-KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRT---- 77 (482)
T ss_pred CCHHHhcCCHHHHHHHHHHHHHHhc--------C-CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccccc----
Confidence 4578999999999888877642111 1 23677999999999999999999999999999999887532
Q ss_pred cchHHHHHHHHHHhh------CCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCC
Q 004267 558 ESEANVREIFDKARQ------SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPD 631 (764)
Q Consensus 558 ~se~~i~~~f~~a~~------~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~ 631 (764)
...++.+...+.. ..+.+|+|||+|.+.... ....++.|+..++. .+..+|+++|.+.
T Consensus 78 --~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~----------d~~~~~aL~~~l~~----~~~~iIli~n~~~ 141 (482)
T PRK04195 78 --ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNE----------DRGGARAILELIKK----AKQPIILTANDPY 141 (482)
T ss_pred --HHHHHHHHHHhhccCcccCCCCeEEEEecCccccccc----------chhHHHHHHHHHHc----CCCCEEEeccCcc
Confidence 2234433333322 246799999999985421 11234555555552 2335667788888
Q ss_pred CCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCCCCHHHHHHHHHHHHH
Q 004267 632 IIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRACK 700 (764)
Q Consensus 632 ~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~~g~sg~di~~~~~~a~~ 700 (764)
.+.+.-+| +....|.|++|+..+...+++..+++.++. ++..+..|++.+.| |++.+++....
T Consensus 142 ~~~~k~Lr--sr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~G----DlR~ain~Lq~ 205 (482)
T PRK04195 142 DPSLRELR--NACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGG----DLRSAINDLQA 205 (482)
T ss_pred ccchhhHh--ccceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHHHHH
Confidence 88774444 334689999999999999999988766543 33447778877654 77777766554
No 126
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=1.5e-13 Score=152.16 Aligned_cols=164 Identities=24% Similarity=0.379 Sum_probs=128.8
Q ss_pred ccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEech------hhh--
Q 004267 208 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGP------EIM-- 279 (764)
Q Consensus 208 ~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~------~l~-- 279 (764)
+|-.|+++.+++|.|++...... |-..++-++|+||||+|||++++.||..++..|+.++-. ++.
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLr-------gs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLR-------GSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGH 483 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhc-------ccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhccc
Confidence 46789999999999999763322 235677899999999999999999999999999876632 222
Q ss_pred -hhccchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccC-------------CCeE
Q 004267 280 -SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKS-------------RAHV 345 (764)
Q Consensus 280 -~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~-------------~~~v 345 (764)
..|+|....++-+.++....+.| +++|||+|.+...-.... .+.|+++||.-+. -..|
T Consensus 484 RRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~g~qGDP-------asALLElLDPEQNanFlDHYLdVp~DLSkV 555 (906)
T KOG2004|consen 484 RRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGSGHQGDP-------ASALLELLDPEQNANFLDHYLDVPVDLSKV 555 (906)
T ss_pred ceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCCCCCCCh-------HHHHHHhcChhhccchhhhccccccchhhe
Confidence 36788888888888888888888 889999999984221111 1557777764322 2479
Q ss_pred EEEEecCCCCCCChhhhccCCcceEEEecCCChHHHHHHHHHHh
Q 004267 346 IVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHT 389 (764)
Q Consensus 346 ~vI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~ 389 (764)
++|+|.|..+.|++.|+. |+ ..|+++-+..++...|.+.|+
T Consensus 556 LFicTAN~idtIP~pLlD--RM-EvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 556 LFICTANVIDTIPPPLLD--RM-EVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred EEEEeccccccCChhhhh--hh-heeeccCccHHHHHHHHHHhh
Confidence 999999999999999987 77 568999999999999988764
No 127
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.49 E-value=3.4e-13 Score=151.48 Aligned_cols=188 Identities=21% Similarity=0.310 Sum_probs=138.6
Q ss_pred CccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCe--------------
Q 004267 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 542 (764)
Q Consensus 477 ~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~-------------- 542 (764)
.-+|+|+.|++.+.+.|...+.. + +.+.++||+|||||||||+|+++|+.+++.
T Consensus 17 P~~f~dliGq~~vv~~L~~ai~~-----------~-ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~ 84 (507)
T PRK06645 17 PSNFAELQGQEVLVKVLSYTILN-----------D-RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQ 84 (507)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCC
Confidence 34689999999999877654331 1 345679999999999999999999987542
Q ss_pred --------------eEEEecccchhcccCcchHHHHHHHHHHhhC----CCeEEEEecccchhhccCCCCCCCCcchHHH
Q 004267 543 --------------FISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSVGDAGGAADRV 604 (764)
Q Consensus 543 --------------~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~----~p~iifiDEid~l~~~r~~~~~~~~~~~~~~ 604 (764)
++.+++.. ..+...++.+.+.+... ...|+||||++.+. ...
T Consensus 85 C~~C~~i~~~~h~Dv~eidaas------~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls--------------~~a 144 (507)
T PRK06645 85 CTNCISFNNHNHPDIIEIDAAS------KTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS--------------KGA 144 (507)
T ss_pred ChHHHHHhcCCCCcEEEeeccC------CCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcC--------------HHH
Confidence 12222110 12356788888887644 34699999999873 234
Q ss_pred HHHHHHhhcCCCCCCcEEEEecCCCCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCCCc-ccHHHHHHHC
Q 004267 605 LNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKD-VDLRALAKYT 683 (764)
Q Consensus 605 ~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~-~~l~~la~~~ 683 (764)
.+.||..|+. +...+++|++|+.++.+.+++.+ |+ ..++|++++.++...+++..+++.++.-+ ..+..+++.+
T Consensus 145 ~naLLk~LEe--pp~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s 219 (507)
T PRK06645 145 FNALLKTLEE--PPPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKS 219 (507)
T ss_pred HHHHHHHHhh--cCCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 6788888885 34466677777888889999887 88 58999999999999999999987665433 3477788887
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 004267 684 QGFSGADITEICQRACKYA 702 (764)
Q Consensus 684 ~g~sg~di~~~~~~a~~~a 702 (764)
+| +.+++.+++..++..+
T Consensus 220 ~G-slR~al~~Ldkai~~~ 237 (507)
T PRK06645 220 EG-SARDAVSILDQAASMS 237 (507)
T ss_pred CC-CHHHHHHHHHHHHHhh
Confidence 75 8889888888876554
No 128
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.48 E-value=5.7e-13 Score=133.22 Aligned_cols=193 Identities=25% Similarity=0.398 Sum_probs=138.1
Q ss_pred eccCccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHh---CCeeEEEeccc
Q 004267 474 EVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPE 550 (764)
Q Consensus 474 ~~~~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~---~~~~i~v~~~~ 550 (764)
....+.++++.|++..|+.|.+.....+. | .+..++||+|+.|||||+++|++..+. +...|.|...+
T Consensus 20 ~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~--------G-~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~ 90 (249)
T PF05673_consen 20 HPDPIRLDDLIGIERQKEALIENTEQFLQ--------G-LPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKED 90 (249)
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHHc--------C-CCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHH
Confidence 34568899999999999988766543222 2 356779999999999999999999975 56677777666
Q ss_pred chhcccCcchHHHHHHHHHHhhC-CCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCC--CCCcEEEEecC
Q 004267 551 LLTMWFGESEANVREIFDKARQS-APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS--AKKTVFIIGAT 627 (764)
Q Consensus 551 l~~~~~g~se~~i~~~f~~a~~~-~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~--~~~~v~vi~aT 627 (764)
+. .+..+++..+.. ..-|||+|++.. . ..+.-...|-..|||.. ...+|+|.+|+
T Consensus 91 L~---------~l~~l~~~l~~~~~kFIlf~DDLsF--e-----------~~d~~yk~LKs~LeGgle~~P~NvliyATS 148 (249)
T PF05673_consen 91 LG---------DLPELLDLLRDRPYKFILFCDDLSF--E-----------EGDTEYKALKSVLEGGLEARPDNVLIYATS 148 (249)
T ss_pred hc---------cHHHHHHHHhcCCCCEEEEecCCCC--C-----------CCcHHHHHHHHHhcCccccCCCcEEEEEec
Confidence 53 345566555533 345999998653 1 11223466667778753 46799999999
Q ss_pred CCCCCCCccC----------CCC-----------CccceEEeecCCCHHHHHHHHHHHhccCCCCCc-ccHH----HHHH
Q 004267 628 NRPDIIDPAL----------LRP-----------GRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKD-VDLR----ALAK 681 (764)
Q Consensus 628 n~~~~ld~al----------lrp-----------gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~-~~l~----~la~ 681 (764)
||.+.+.+-+ +.| .||...|.|.+||.++..+|++.++.+.++.-+ .++. ..|.
T Consensus 149 NRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~ 228 (249)
T PF05673_consen 149 NRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWAL 228 (249)
T ss_pred chhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 9976554321 222 499999999999999999999999988777654 2332 3344
Q ss_pred HCCCCCHHHHHHHHHH
Q 004267 682 YTQGFSGADITEICQR 697 (764)
Q Consensus 682 ~~~g~sg~di~~~~~~ 697 (764)
.-.|.||+-..+.++.
T Consensus 229 ~rg~RSGRtA~QF~~~ 244 (249)
T PF05673_consen 229 RRGGRSGRTARQFIDD 244 (249)
T ss_pred HcCCCCHHHHHHHHHH
Confidence 4567888887777654
No 129
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=3.4e-13 Score=156.40 Aligned_cols=184 Identities=22% Similarity=0.302 Sum_probs=131.4
Q ss_pred ccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCee--------------
Q 004267 478 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANF-------------- 543 (764)
Q Consensus 478 v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~-------------- 543 (764)
.+|++|.|++.+++.|+..+... +.+..+||+|||||||||+|+++|+.+++..
T Consensus 13 ~tFddIIGQe~Iv~~LknaI~~~------------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~ 80 (944)
T PRK14949 13 ATFEQMVGQSHVLHALTNALTQQ------------RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCV 80 (944)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHH
Confidence 56899999999998887664321 2344579999999999999999999876531
Q ss_pred ----------EEEecccchhcccCcchHHHHHHHHHHh----hCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHH
Q 004267 544 ----------ISVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLL 609 (764)
Q Consensus 544 ----------i~v~~~~l~~~~~g~se~~i~~~f~~a~----~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL 609 (764)
+.+++.+ ...-..+|++.+.+. .....|+||||++.|- ....+.||
T Consensus 81 ~i~~g~~~DviEidAas------~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT--------------~eAqNALL 140 (944)
T PRK14949 81 EIAQGRFVDLIEVDAAS------RTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS--------------RSSFNALL 140 (944)
T ss_pred HHhcCCCceEEEecccc------ccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC--------------HHHHHHHH
Confidence 1122111 012334666665543 2345799999999973 45678899
Q ss_pred HhhcCCCCCCcEEEEecCCCCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCCCCH
Q 004267 610 TEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS-KDVDLRALAKYTQGFSG 688 (764)
Q Consensus 610 ~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~~g~sg 688 (764)
..|+.. ...+.+|++|+.+..|.+.+++ |+ .++.|++++.++....++..+...++. .+..+..+++.+.| +.
T Consensus 141 KtLEEP--P~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~G-d~ 214 (944)
T PRK14949 141 KTLEEP--PEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANG-SM 214 (944)
T ss_pred HHHhcc--CCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 999863 3456666677778888888887 88 589999999999998888887665443 22346777877765 77
Q ss_pred HHHHHHHHHHH
Q 004267 689 ADITEICQRAC 699 (764)
Q Consensus 689 ~di~~~~~~a~ 699 (764)
+++.++|..|.
T Consensus 215 R~ALnLLdQal 225 (944)
T PRK14949 215 RDALSLTDQAI 225 (944)
T ss_pred HHHHHHHHHHH
Confidence 88888887666
No 130
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.48 E-value=2.6e-13 Score=153.17 Aligned_cols=173 Identities=21% Similarity=0.315 Sum_probs=119.0
Q ss_pred cceeeeCCCCCChhHHHHHHHHHh-----CCeeEEEecccchhcccCcchHHHHHHHHHHhhCCCeEEEEecccchhhcc
Q 004267 516 KGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQR 590 (764)
Q Consensus 516 ~gill~GppGtGKT~lak~lA~~~-----~~~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r 590 (764)
..++||||||||||+|++++++++ +..++.+++.++.+.+..........-|..... .+.+|+|||++.+.+++
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~~ 227 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYR-SVDVLLIDDIQFLAGKE 227 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHh-cCCEEEEehhhhhcCCH
Confidence 459999999999999999999986 556888898888765544332212223332222 45799999999986532
Q ss_pred CCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCCC---CCccCCCCCccc--eEEeecCCCHHHHHHHHHHHh
Q 004267 591 GSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDI---IDPALLRPGRLD--QLIYIPLPDEDSRHQIFKACL 665 (764)
Q Consensus 591 ~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~---ld~allrpgRf~--~~i~~~~p~~~~r~~Il~~~~ 665 (764)
.....|+..++.+...+..+||+++..|.. +++++.+ ||. ..+.+++||.++|.+|++..+
T Consensus 228 ------------~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~ 293 (450)
T PRK00149 228 ------------RTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKA 293 (450)
T ss_pred ------------HHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHH
Confidence 112334444443333344566666666655 6788776 996 589999999999999999999
Q ss_pred ccCCCC-CcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q 004267 666 RKSPVS-KDVDLRALAKYTQGFSGADITEICQRACKYAIR 704 (764)
Q Consensus 666 ~~~~~~-~~~~l~~la~~~~g~sg~di~~~~~~a~~~a~~ 704 (764)
+..++. ++.-++.+|+...| +.+++..++......|..
T Consensus 294 ~~~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l~~~~~~ 332 (450)
T PRK00149 294 EEEGIDLPDEVLEFIAKNITS-NVRELEGALNRLIAYASL 332 (450)
T ss_pred HHcCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHHHHHHHh
Confidence 765443 23347777877654 888888888877666543
No 131
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.48 E-value=6.1e-13 Score=148.18 Aligned_cols=198 Identities=22% Similarity=0.306 Sum_probs=131.1
Q ss_pred CcceeeeCCCCCChhHHHHHHHHHh-----CCeeEEEecccchh----------cccC-------cc-hHHHHHHHHHHh
Q 004267 515 SKGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLT----------MWFG-------ES-EANVREIFDKAR 571 (764)
Q Consensus 515 ~~gill~GppGtGKT~lak~lA~~~-----~~~~i~v~~~~l~~----------~~~g-------~s-e~~i~~~f~~a~ 571 (764)
+.+++++||||||||++++.++.++ +..++.+++....+ ...+ .+ ......+++...
T Consensus 55 ~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 134 (394)
T PRK00411 55 PLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLD 134 (394)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHH
Confidence 3569999999999999999999876 46788888764321 1112 11 222333444333
Q ss_pred h-CCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCC---CCCccCCCCCcc-ceE
Q 004267 572 Q-SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPD---IIDPALLRPGRL-DQL 646 (764)
Q Consensus 572 ~-~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~---~ld~allrpgRf-~~~ 646 (764)
. ..+.||+|||+|.+.... ....+..|+..++... ..++.+|+++|.++ .+++.+.+ || ...
T Consensus 135 ~~~~~~viviDE~d~l~~~~----------~~~~l~~l~~~~~~~~-~~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~ 201 (394)
T PRK00411 135 ERDRVLIVALDDINYLFEKE----------GNDVLYSLLRAHEEYP-GARIGVIGISSDLTFLYILDPRVKS--VFRPEE 201 (394)
T ss_pred hcCCEEEEEECCHhHhhccC----------CchHHHHHHHhhhccC-CCeEEEEEEECCcchhhhcCHHHHh--cCCcce
Confidence 2 356899999999987211 1246777776666543 23788888888764 56676655 55 367
Q ss_pred EeecCCCHHHHHHHHHHHhccC---CCCCcccHHHHHHHCCCC--CHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCCC
Q 004267 647 IYIPLPDEDSRHQIFKACLRKS---PVSKDVDLRALAKYTQGF--SGADITEICQRACKYAIRENIEKDIERERRRRDNP 721 (764)
Q Consensus 647 i~~~~p~~~~r~~Il~~~~~~~---~~~~~~~l~~la~~~~g~--sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~ 721 (764)
|+|++++.++..+|++..++.. ..-.+.-++.+++.+.+. ..+.+..+|+.|+..|..+.
T Consensus 202 i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~--------------- 266 (394)
T PRK00411 202 IYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREG--------------- 266 (394)
T ss_pred eecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcC---------------
Confidence 8999999999999999888542 112333356677766432 33455577877777665442
Q ss_pred ccccccccccccccccHHHHHHHHHhcCCC
Q 004267 722 EAMDEDAAEDEVSEIKAAHFEESMKFARRS 751 (764)
Q Consensus 722 ~~~~~~~~~~~~~~i~~~~f~~a~~~~~~s 751 (764)
...|+.+|+.+|+..+.++
T Consensus 267 -----------~~~I~~~~v~~a~~~~~~~ 285 (394)
T PRK00411 267 -----------SRKVTEEDVRKAYEKSEIV 285 (394)
T ss_pred -----------CCCcCHHHHHHHHHHHHHH
Confidence 2368889998888887544
No 132
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.47 E-value=3.9e-13 Score=149.89 Aligned_cols=172 Identities=20% Similarity=0.317 Sum_probs=117.5
Q ss_pred cceeeeCCCCCChhHHHHHHHHHh-----CCeeEEEecccchhcccCcchH-HHHHHHHHHhhCCCeEEEEecccchhhc
Q 004267 516 KGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLTMWFGESEA-NVREIFDKARQSAPCVLFFDELDSIATQ 589 (764)
Q Consensus 516 ~gill~GppGtGKT~lak~lA~~~-----~~~~i~v~~~~l~~~~~g~se~-~i~~~f~~a~~~~p~iifiDEid~l~~~ 589 (764)
..++||||+|+|||+|++++++++ +..++.+++.++...+...... .+....+..+ .+.+|+|||++.+.++
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~ 214 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAGK 214 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcCC
Confidence 458999999999999999999976 5678888988876654432211 1222222222 2469999999998643
Q ss_pred cCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCCC---CCccCCCCCccc--eEEeecCCCHHHHHHHHHHH
Q 004267 590 RGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDI---IDPALLRPGRLD--QLIYIPLPDEDSRHQIFKAC 664 (764)
Q Consensus 590 r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~---ld~allrpgRf~--~~i~~~~p~~~~r~~Il~~~ 664 (764)
+ . ....|+..++.....+..+||++++.|+. +++.+.+ ||. ..+.+++||.++|..|++..
T Consensus 215 ~---------~---~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~ 280 (405)
T TIGR00362 215 E---------R---TQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKK 280 (405)
T ss_pred H---------H---HHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHH
Confidence 1 1 12233333333323334566666666654 5677776 886 58999999999999999999
Q ss_pred hccCCCC-CcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q 004267 665 LRKSPVS-KDVDLRALAKYTQGFSGADITEICQRACKYAIR 704 (764)
Q Consensus 665 ~~~~~~~-~~~~l~~la~~~~g~sg~di~~~~~~a~~~a~~ 704 (764)
++..++. ++.-++.+|+... -+.+++..++......|..
T Consensus 281 ~~~~~~~l~~e~l~~ia~~~~-~~~r~l~~~l~~l~~~a~~ 320 (405)
T TIGR00362 281 AEEEGLELPDEVLEFIAKNIR-SNVRELEGALNRLLAYASL 320 (405)
T ss_pred HHHcCCCCCHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHH
Confidence 9766554 3334677887765 4889999888877766643
No 133
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=3.9e-13 Score=151.68 Aligned_cols=185 Identities=22% Similarity=0.316 Sum_probs=134.5
Q ss_pred ccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCC----------------
Q 004267 478 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA---------------- 541 (764)
Q Consensus 478 v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~---------------- 541 (764)
.+|+++.|++.+++.|...+.. + +.+..+||+||+|+|||++|+++|+.+++
T Consensus 12 ktFddVIGQe~vv~~L~~aI~~-----------g-rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~ 79 (702)
T PRK14960 12 RNFNELVGQNHVSRALSSALER-----------G-RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCK 79 (702)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHH
Confidence 4689999999999988776542 1 33456899999999999999999998754
Q ss_pred --------eeEEEecccchhcccCcchHHHHHHHHHHhh----CCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHH
Q 004267 542 --------NFISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLL 609 (764)
Q Consensus 542 --------~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~----~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL 609 (764)
.++.+++++- .+-..+|.+...+.. ....|+||||+|.+-. ...+.||
T Consensus 80 ~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~--------------~A~NALL 139 (702)
T PRK14960 80 AVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLST--------------HSFNALL 139 (702)
T ss_pred HHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCH--------------HHHHHHH
Confidence 3444444321 124457777765532 3457999999998732 3467788
Q ss_pred HhhcCCCCCCcEEEEecCCCCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCCC-cccHHHHHHHCCCCCH
Q 004267 610 TEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSK-DVDLRALAKYTQGFSG 688 (764)
Q Consensus 610 ~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~-~~~l~~la~~~~g~sg 688 (764)
..|+.. ...+.+|++|+.+..+.+.+++ |+ .++.|.+++.++..+.++..+++.++.- +..+..+|+.+.| +.
T Consensus 140 KtLEEP--P~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~G-dL 213 (702)
T PRK14960 140 KTLEEP--PEHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQG-SL 213 (702)
T ss_pred HHHhcC--CCCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 888864 3456677777778888888876 88 4899999999999999988887765543 3346778877765 78
Q ss_pred HHHHHHHHHHHH
Q 004267 689 ADITEICQRACK 700 (764)
Q Consensus 689 ~di~~~~~~a~~ 700 (764)
+++.+++..+..
T Consensus 214 RdALnLLDQaIa 225 (702)
T PRK14960 214 RDALSLTDQAIA 225 (702)
T ss_pred HHHHHHHHHHHH
Confidence 888887766554
No 134
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.45 E-value=5.6e-13 Score=152.75 Aligned_cols=184 Identities=22% Similarity=0.340 Sum_probs=132.0
Q ss_pred ccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCe---------------
Q 004267 478 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN--------------- 542 (764)
Q Consensus 478 v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~--------------- 542 (764)
.+|++|+|++.+.+.|...+.. + +.+..+||+||+||||||+|+++|+.+++.
T Consensus 13 ~~f~divGQe~vv~~L~~~l~~-----------~-rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~ 80 (647)
T PRK07994 13 QTFAEVVGQEHVLTALANALDL-----------G-RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCR 80 (647)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHH
Confidence 4689999999999888765542 1 233458999999999999999999987542
Q ss_pred ---------eEEEecccchhcccCcchHHHHHHHHHHh----hCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHH
Q 004267 543 ---------FISVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLL 609 (764)
Q Consensus 543 ---------~i~v~~~~l~~~~~g~se~~i~~~f~~a~----~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL 609 (764)
++.+++.. ...-..+|++.+.+. .....|+||||+|.+. ....|.||
T Consensus 81 ~i~~g~~~D~ieidaas------~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls--------------~~a~NALL 140 (647)
T PRK07994 81 EIEQGRFVDLIEIDAAS------RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLS--------------RHSFNALL 140 (647)
T ss_pred HHHcCCCCCceeecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCC--------------HHHHHHHH
Confidence 33333321 012334666655543 3456799999999873 34578899
Q ss_pred HhhcCCCCCCcEEEEecCCCCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCCC-cccHHHHHHHCCCCCH
Q 004267 610 TEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSK-DVDLRALAKYTQGFSG 688 (764)
Q Consensus 610 ~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~-~~~l~~la~~~~g~sg 688 (764)
..|+. +...+.+|++|+.++.|.+.+++ |+ ..++|.+++.++....++..+++.++.. +..+..++..++| +.
T Consensus 141 KtLEE--Pp~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~G-s~ 214 (647)
T PRK07994 141 KTLEE--PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADG-SM 214 (647)
T ss_pred HHHHc--CCCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 98886 34466677778888889888887 87 6999999999999999988886655543 3346677777765 77
Q ss_pred HHHHHHHHHHH
Q 004267 689 ADITEICQRAC 699 (764)
Q Consensus 689 ~di~~~~~~a~ 699 (764)
++..+++..|.
T Consensus 215 R~Al~lldqai 225 (647)
T PRK07994 215 RDALSLTDQAI 225 (647)
T ss_pred HHHHHHHHHHH
Confidence 77777776554
No 135
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.44 E-value=1.2e-12 Score=150.20 Aligned_cols=186 Identities=25% Similarity=0.366 Sum_probs=136.9
Q ss_pred ccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCC----------------
Q 004267 478 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA---------------- 541 (764)
Q Consensus 478 v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~---------------- 541 (764)
.+|+++.|++++.+.|+..+.. -+.+..+||+||+|||||++|+.+|..+.+
T Consensus 13 ~~f~~viGq~~v~~~L~~~i~~------------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~ 80 (559)
T PRK05563 13 QTFEDVVGQEHITKTLKNAIKQ------------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICK 80 (559)
T ss_pred CcHHhccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHH
Confidence 4689999999999988776542 123455899999999999999999997542
Q ss_pred --------eeEEEecccchhcccCcchHHHHHHHHHHhh----CCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHH
Q 004267 542 --------NFISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLL 609 (764)
Q Consensus 542 --------~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~----~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL 609 (764)
+++.++++. +.+...+|++.+.+.. ....|++|||+|.+. ....+.||
T Consensus 81 ~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt--------------~~a~naLL 140 (559)
T PRK05563 81 AITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS--------------TGAFNALL 140 (559)
T ss_pred HHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC--------------HHHHHHHH
Confidence 344444421 2345568888877653 335799999999873 23577888
Q ss_pred HhhcCCCCCCcEEEEecCCCCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCCC-cccHHHHHHHCCCCCH
Q 004267 610 TEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSK-DVDLRALAKYTQGFSG 688 (764)
Q Consensus 610 ~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~-~~~l~~la~~~~g~sg 688 (764)
..|+.. ...+++|.+|+.++.|.+.+++ |+. .+.|++|+.++....++..+++.++.- +..+..++..+.| +.
T Consensus 141 KtLEep--p~~~ifIlatt~~~ki~~tI~S--Rc~-~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G-~~ 214 (559)
T PRK05563 141 KTLEEP--PAHVIFILATTEPHKIPATILS--RCQ-RFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEG-GM 214 (559)
T ss_pred HHhcCC--CCCeEEEEEeCChhhCcHHHHh--Hhe-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 888864 3456666667778999999887 885 788999999999999998887766543 3346777887765 78
Q ss_pred HHHHHHHHHHHHH
Q 004267 689 ADITEICQRACKY 701 (764)
Q Consensus 689 ~di~~~~~~a~~~ 701 (764)
+++.+++..+...
T Consensus 215 R~al~~Ldq~~~~ 227 (559)
T PRK05563 215 RDALSILDQAISF 227 (559)
T ss_pred HHHHHHHHHHHHh
Confidence 8888887766543
No 136
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.43 E-value=4.6e-12 Score=147.04 Aligned_cols=224 Identities=25% Similarity=0.375 Sum_probs=137.7
Q ss_pred CccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHh----------CCeeEEE
Q 004267 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISV 546 (764)
Q Consensus 477 ~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~----------~~~~i~v 546 (764)
.-+|+++.|++...+.+...+.. ..+.+++|+|||||||||+|+++++.. +.+|+.+
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~-------------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i 216 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVAS-------------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEV 216 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEE
Confidence 34678899998887765443321 123469999999999999999998765 3578999
Q ss_pred ecccch-------hcccCcchHHH----HHHHHH----------HhhCCCeEEEEecccchhhccCCCCCCCCcchHHHH
Q 004267 547 KGPELL-------TMWFGESEANV----REIFDK----------ARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVL 605 (764)
Q Consensus 547 ~~~~l~-------~~~~g~se~~i----~~~f~~----------a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~ 605 (764)
++..+- ..++|...... +..+.. .......+||+||++.+-. ...
T Consensus 217 ~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~--------------~~Q 282 (615)
T TIGR02903 217 DGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDP--------------LLQ 282 (615)
T ss_pred echhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCH--------------HHH
Confidence 987641 11222211111 111110 0012235999999988643 223
Q ss_pred HHHHHhhcCC--------------------------CCCCcEEEEe-cCCCCCCCCccCCCCCccceEEeecCCCHHHHH
Q 004267 606 NQLLTEMDGM--------------------------SAKKTVFIIG-ATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRH 658 (764)
Q Consensus 606 ~~lL~~ld~~--------------------------~~~~~v~vi~-aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~ 658 (764)
..|+..|+.. .....+++|+ ||+.++.+++++++ ||. .++|++++.++..
T Consensus 283 ~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~ 359 (615)
T TIGR02903 283 NKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIA 359 (615)
T ss_pred HHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHH
Confidence 3344433221 0112345554 55678899999887 997 6789999999999
Q ss_pred HHHHHHhccCCCCC-cccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCCCcccccccccccccccc
Q 004267 659 QIFKACLRKSPVSK-DVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRRDNPEAMDEDAAEDEVSEIK 737 (764)
Q Consensus 659 ~Il~~~~~~~~~~~-~~~l~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 737 (764)
.|++..+++..+.- +.-++.|++.+ +.|+...+++..+...++.+..... .......|+
T Consensus 360 ~Il~~~a~~~~v~ls~eal~~L~~ys--~~gRraln~L~~~~~~~~~~~~~~~------------------~~~~~~~I~ 419 (615)
T TIGR02903 360 LIVLNAAEKINVHLAAGVEELIARYT--IEGRKAVNILADVYGYALYRAAEAG------------------KENDKVTIT 419 (615)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHCC--CcHHHHHHHHHHHHHHHHHHHHHhc------------------cCCCCeeEC
Confidence 99999988755432 22344555554 3667666766666655544432000 001234799
Q ss_pred HHHHHHHHHhcCC
Q 004267 738 AAHFEESMKFARR 750 (764)
Q Consensus 738 ~~~f~~a~~~~~~ 750 (764)
.+|++++++.-+-
T Consensus 420 ~edv~~~l~~~r~ 432 (615)
T TIGR02903 420 QDDVYEVIQISRL 432 (615)
T ss_pred HHHHHHHhCCCcC
Confidence 9999999987763
No 137
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.43 E-value=4.9e-13 Score=151.36 Aligned_cols=185 Identities=19% Similarity=0.252 Sum_probs=133.7
Q ss_pred ccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCe---------------
Q 004267 478 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN--------------- 542 (764)
Q Consensus 478 v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~--------------- 542 (764)
-+|+++.|++.+.+.|...+.. -+.+..+||+||+|||||++|+++|+.+++.
T Consensus 13 ~~f~divGq~~v~~~L~~~~~~------------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~ 80 (509)
T PRK14958 13 RCFQEVIGQAPVVRALSNALDQ------------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCR 80 (509)
T ss_pred CCHHHhcCCHHHHHHHHHHHHh------------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHH
Confidence 4689999999999988876542 1234458999999999999999999987532
Q ss_pred ---------eEEEecccchhcccCcchHHHHHHHHHHhh----CCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHH
Q 004267 543 ---------FISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLL 609 (764)
Q Consensus 543 ---------~i~v~~~~l~~~~~g~se~~i~~~f~~a~~----~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL 609 (764)
++.++++. ...-..+|++.+.+.. ....|+||||+|.+.. ...+.||
T Consensus 81 ~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~--------------~a~naLL 140 (509)
T PRK14958 81 EIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSG--------------HSFNALL 140 (509)
T ss_pred HHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCH--------------HHHHHHH
Confidence 44454432 1234457777766543 3457999999999742 3468889
Q ss_pred HhhcCCCCCCcEEEEecCCCCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCCCCH
Q 004267 610 TEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS-KDVDLRALAKYTQGFSG 688 (764)
Q Consensus 610 ~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~~g~sg 688 (764)
..|+..+ ..+.+|++|+.++.+.+.+++ |+ ..++|.+++.++....++..+++.++. ++..+..+++.+.| +.
T Consensus 141 k~LEepp--~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~G-sl 214 (509)
T PRK14958 141 KTLEEPP--SHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANG-SV 214 (509)
T ss_pred HHHhccC--CCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cH
Confidence 8888643 346666667778888878776 87 478899999988888888888766554 23346778887764 88
Q ss_pred HHHHHHHHHHHH
Q 004267 689 ADITEICQRACK 700 (764)
Q Consensus 689 ~di~~~~~~a~~ 700 (764)
+++.+++..+..
T Consensus 215 R~al~lLdq~ia 226 (509)
T PRK14958 215 RDALSLLDQSIA 226 (509)
T ss_pred HHHHHHHHHHHh
Confidence 888888877654
No 138
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=7.8e-13 Score=147.54 Aligned_cols=164 Identities=25% Similarity=0.355 Sum_probs=129.0
Q ss_pred ccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEech------hhh--
Q 004267 208 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGP------EIM-- 279 (764)
Q Consensus 208 ~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~------~l~-- 279 (764)
.|-.||++.+++|.|++....+.+ -..+.-++|+||||+|||+|++.||..++..|+.++-. ++.
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~-------~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGH 395 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTK-------KLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGH 395 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhc-------cCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccc
Confidence 367899999999999987532221 13356699999999999999999999999999887642 332
Q ss_pred -hhccchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccC-------------CCeE
Q 004267 280 -SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKS-------------RAHV 345 (764)
Q Consensus 280 -~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~-------------~~~v 345 (764)
..|.|....++-+-+..|....| ++++||||.+...-..... +.|++.||.-+. -..|
T Consensus 396 RRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~rGDPa-------SALLEVLDPEQN~~F~DhYLev~yDLS~V 467 (782)
T COG0466 396 RRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFRGDPA-------SALLEVLDPEQNNTFSDHYLEVPYDLSKV 467 (782)
T ss_pred cccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCCCChH-------HHHHhhcCHhhcCchhhccccCccchhhe
Confidence 36888888888888888888888 8899999999866433322 456666654221 2489
Q ss_pred EEEEecCCCCCCChhhhccCCcceEEEecCCChHHHHHHHHHHh
Q 004267 346 IVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHT 389 (764)
Q Consensus 346 ~vI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~ 389 (764)
++|+|.|..+.|+..|+. |+ ..|+++-.++.+..+|.+.|+
T Consensus 468 mFiaTANsl~tIP~PLlD--RM-EiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 468 MFIATANSLDTIPAPLLD--RM-EVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EEEeecCccccCChHHhc--ce-eeeeecCCChHHHHHHHHHhc
Confidence 999999999999999987 77 568999999999999998774
No 139
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=1.3e-12 Score=145.72 Aligned_cols=186 Identities=20% Similarity=0.279 Sum_probs=137.6
Q ss_pred ccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhC-----------------
Q 004267 478 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ----------------- 540 (764)
Q Consensus 478 v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~----------------- 540 (764)
.+|+|+.|++.+.+.|...+.. + +.+.++||+||+|+||||+|+++|..++
T Consensus 10 ~~f~dliGQe~vv~~L~~a~~~-----------~-ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~ 77 (491)
T PRK14964 10 SSFKDLVGQDVLVRILRNAFTL-----------N-KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCI 77 (491)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-----------C-CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHH
Confidence 5689999999999988765432 1 3456799999999999999999998642
Q ss_pred -------CeeEEEecccchhcccCcchHHHHHHHHHHhhC----CCeEEEEecccchhhccCCCCCCCCcchHHHHHHHH
Q 004267 541 -------ANFISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLL 609 (764)
Q Consensus 541 -------~~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~----~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL 609 (764)
..++.+++++ ..+-..+|++.+.+... ...|++|||+|.+. ....+.||
T Consensus 78 ~i~~~~~~Dv~eidaas------~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls--------------~~A~NaLL 137 (491)
T PRK14964 78 SIKNSNHPDVIEIDAAS------NTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLS--------------NSAFNALL 137 (491)
T ss_pred HHhccCCCCEEEEeccc------CCCHHHHHHHHHHHHhccccCCceEEEEeChHhCC--------------HHHHHHHH
Confidence 2345555542 12345688888777543 34699999998863 24578889
Q ss_pred HhhcCCCCCCcEEEEecCCCCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCCCCH
Q 004267 610 TEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS-KDVDLRALAKYTQGFSG 688 (764)
Q Consensus 610 ~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~~g~sg 688 (764)
..|+..+ ..+.+|++|+.++.+.+.+++ |+ ..+.|.+++.++....++..+++.++. ++..+..+++.++| +.
T Consensus 138 K~LEePp--~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G-sl 211 (491)
T PRK14964 138 KTLEEPA--PHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG-SM 211 (491)
T ss_pred HHHhCCC--CCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 9998643 456677777778888888887 88 479999999999999999888776554 33446777888764 88
Q ss_pred HHHHHHHHHHHHH
Q 004267 689 ADITEICQRACKY 701 (764)
Q Consensus 689 ~di~~~~~~a~~~ 701 (764)
+++.+++..+...
T Consensus 212 R~alslLdqli~y 224 (491)
T PRK14964 212 RNALFLLEQAAIY 224 (491)
T ss_pred HHHHHHHHHHHHh
Confidence 8888888776654
No 140
>PF02359 CDC48_N: Cell division protein 48 (CDC48), N-terminal domain; InterPro: IPR003338 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The VAT protein of the archaebacterium Thermoplasma acidophilum, like all other members of the Cdc48/p97 family of AAA ATPases, has two ATPase domains and a 185-residue amino-terminal substrate-recognition domain, VAT-N. VAT shows activity in protein folding and unfolding and thus shares the common function of these ATPases in disassembly and/or degradation of protein complexes. VAT-N is composed of two equally sized subdomains. The amino-terminal subdomain VAT-Nn forms a double-psi beta-barrel whose pseudo-twofold symmetry is mirrored by an internal sequence repeat of 42 residues. The carboxy-terminal subdomain VAT-Nc forms a novel six-stranded beta-clam fold []. Together, VAT-Nn and VAT-Nc form a kidney-shaped structure, in close agreement with results from electron microscopy. VAT-Nn is related to numerous proteins including prokaryotic transcription factors, metabolic enzymes, the protease cofactors UFD1 and PrlF, and aspartic proteinases. ; GO: 0005524 ATP binding; PDB: 1CZ4_A 1CZ5_A 3CF3_C 3CF1_A 3CF2_A 1S3S_D 1E32_A 1R7R_A 2PJH_B 1CR5_B ....
Probab=99.41 E-value=1.1e-12 Score=112.50 Aligned_cols=80 Identities=36% Similarity=0.588 Sum_probs=66.9
Q ss_pred eEEEecccCC---CCcEEEECHHHHhhcCCCCCCEEEEEeCCCceEEEEEEcCCCC--CCCeEEEcHhHHhhcCcCCCCe
Q 004267 30 RLVVDEAIND---DNSVVGLHPDTMDKLQIFRGDTILIKGKKRKDTICIALADDTC--EQPKIRMNKVVRSNLRVRLGDV 104 (764)
Q Consensus 30 ~~~v~~~~~~---~~~~v~~~~~~~~~l~~~~gd~v~i~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~r~~~~~~~g~~ 104 (764)
+|+|.++..+ ++++|+|||++|++||+..||+|.|.|. + .++|.+|+.... +++.|+|+..+|+|+|+++||.
T Consensus 1 ~L~V~~~p~~~~~~~n~v~v~~~~m~~l~l~~gd~v~i~g~-~-~tv~~v~~~~~~~~~~g~I~l~~~~R~n~~v~igd~ 78 (87)
T PF02359_consen 1 RLRVAEAPSDEDAGTNCVRVSPEDMEELGLFPGDVVLISGK-R-KTVAFVFPDRPDDSPPGVIRLSGIQRKNAGVSIGDR 78 (87)
T ss_dssp EEEEEE-SSSHHHCTTEEEEEHHHHHCTTT-TTEEEEEETT-T-EEEEEEEEECCSTTCTTEEEE-HHHHHHCT--TTSE
T ss_pred CcEEEeCCChHhCCCCEEEEcHHHHHHcCCCCccEEEEeCC-c-eEEEEEEECCCCCCCCCEEEECHHHHhhCCcCCCCE
Confidence 5889888743 9999999999999999999999999994 3 488999987544 7899999999999999999999
Q ss_pred EEEEecC
Q 004267 105 VSVHQCP 111 (764)
Q Consensus 105 v~v~~~~ 111 (764)
|+|+++.
T Consensus 79 V~V~~~~ 85 (87)
T PF02359_consen 79 VTVRPYD 85 (87)
T ss_dssp EEEEEET
T ss_pred EEEEECC
Confidence 9999975
No 141
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.41 E-value=3.3e-12 Score=139.23 Aligned_cols=185 Identities=22% Similarity=0.323 Sum_probs=118.3
Q ss_pred ccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhC-----CeeEEEecccch
Q 004267 478 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ-----ANFISVKGPELL 552 (764)
Q Consensus 478 v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~-----~~~i~v~~~~l~ 552 (764)
.+|+++.|.+.+++.|...+.. + ...+++|+||||||||++|+++++++. .+++.++++++.
T Consensus 12 ~~~~~~~g~~~~~~~L~~~~~~-----------~--~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~ 78 (337)
T PRK12402 12 ALLEDILGQDEVVERLSRAVDS-----------P--NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFF 78 (337)
T ss_pred CcHHHhcCCHHHHHHHHHHHhC-----------C--CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhh
Confidence 4578889999998888765432 1 123699999999999999999999863 356788877654
Q ss_pred hcc-------------cCc-------chHHHHHHHHHHhh-----CCCeEEEEecccchhhccCCCCCCCCcchHHHHHH
Q 004267 553 TMW-------------FGE-------SEANVREIFDKARQ-----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQ 607 (764)
Q Consensus 553 ~~~-------------~g~-------se~~i~~~f~~a~~-----~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~ 607 (764)
..+ .+. ....++.+.+.... ..+.++|+||++.+.. ...+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~--------------~~~~~ 144 (337)
T PRK12402 79 DQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRE--------------DAQQA 144 (337)
T ss_pred hcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCH--------------HHHHH
Confidence 221 111 01223333323222 2346999999998632 22344
Q ss_pred HHHhhcCCCCCCcEEEEecCCCCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCCC
Q 004267 608 LLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS-KDVDLRALAKYTQGF 686 (764)
Q Consensus 608 lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~~g~ 686 (764)
|+..|+.... ... +|.+|+.+..+.+.+.+ |+ ..+.|++|+.++...+++..+++.++. ++..+..++..+.
T Consensus 145 L~~~le~~~~-~~~-~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~-- 217 (337)
T PRK12402 145 LRRIMEQYSR-TCR-FIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAG-- 217 (337)
T ss_pred HHHHHHhccC-CCe-EEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC--
Confidence 5555554432 233 44455556667777766 76 478999999999999999988766554 3345677777763
Q ss_pred CHHHHHHHHHHH
Q 004267 687 SGADITEICQRA 698 (764)
Q Consensus 687 sg~di~~~~~~a 698 (764)
.+++.+++..
T Consensus 218 --gdlr~l~~~l 227 (337)
T PRK12402 218 --GDLRKAILTL 227 (337)
T ss_pred --CCHHHHHHHH
Confidence 3444444433
No 142
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.41 E-value=1.2e-12 Score=149.21 Aligned_cols=186 Identities=19% Similarity=0.274 Sum_probs=135.6
Q ss_pred ccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCe---------------
Q 004267 478 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN--------------- 542 (764)
Q Consensus 478 v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~--------------- 542 (764)
.+|++|+|++.+++.|+..+.. -+.+.++||+||+|||||++|+++|+.+.+.
T Consensus 13 ~tFddIIGQe~vv~~L~~ai~~------------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr 80 (709)
T PRK08691 13 KTFADLVGQEHVVKALQNALDE------------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCT 80 (709)
T ss_pred CCHHHHcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHH
Confidence 4689999999999988876542 1345669999999999999999999986432
Q ss_pred ---------eEEEecccchhcccCcchHHHHHHHHHHhh----CCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHH
Q 004267 543 ---------FISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLL 609 (764)
Q Consensus 543 ---------~i~v~~~~l~~~~~g~se~~i~~~f~~a~~----~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL 609 (764)
++.++++. +.+...++++++.+.. ....|+||||+|.+. ....+.||
T Consensus 81 ~i~~g~~~DvlEidaAs------~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls--------------~~A~NALL 140 (709)
T PRK08691 81 QIDAGRYVDLLEIDAAS------NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS--------------KSAFNAML 140 (709)
T ss_pred HHhccCccceEEEeccc------cCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC--------------HHHHHHHH
Confidence 12222211 2234567888876543 334799999998762 34567888
Q ss_pred HhhcCCCCCCcEEEEecCCCCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCCC-cccHHHHHHHCCCCCH
Q 004267 610 TEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSK-DVDLRALAKYTQGFSG 688 (764)
Q Consensus 610 ~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~-~~~l~~la~~~~g~sg 688 (764)
..|+.. ...+.+|++||.+..+.+.+++ |+ ..+.|++++.++....++..+++.++.- +..+..|++.+. -+.
T Consensus 141 KtLEEP--p~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~-Gsl 214 (709)
T PRK08691 141 KTLEEP--PEHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAA-GSM 214 (709)
T ss_pred HHHHhC--CCCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhC-CCH
Confidence 888864 3456777777888888888775 88 4788889999999999999888776542 234677887775 588
Q ss_pred HHHHHHHHHHHHH
Q 004267 689 ADITEICQRACKY 701 (764)
Q Consensus 689 ~di~~~~~~a~~~ 701 (764)
+++.+++..+...
T Consensus 215 RdAlnLLDqaia~ 227 (709)
T PRK08691 215 RDALSLLDQAIAL 227 (709)
T ss_pred HHHHHHHHHHHHh
Confidence 8888888776653
No 143
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.41 E-value=3.5e-12 Score=144.13 Aligned_cols=185 Identities=22% Similarity=0.342 Sum_probs=131.4
Q ss_pred CccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCC---------------
Q 004267 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 541 (764)
Q Consensus 477 ~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~--------------- 541 (764)
...|+++.|++++++.|...+.. -+.+..+||+|||||||||+|+++|..+..
T Consensus 10 P~~~~dvvGq~~v~~~L~~~i~~------------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~ 77 (504)
T PRK14963 10 PITFDEVVGQEHVKEVLLAALRQ------------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL 77 (504)
T ss_pred CCCHHHhcChHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH
Confidence 35689999999999988766542 123344799999999999999999997642
Q ss_pred --------eeEEEecccchhcccCcchHHHHHHHHHHhh----CCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHH
Q 004267 542 --------NFISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLL 609 (764)
Q Consensus 542 --------~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~----~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL 609 (764)
.++.+++++ ..+-..++++.+.+.. ..+.|+||||+|.+. ...++.||
T Consensus 78 ~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls--------------~~a~naLL 137 (504)
T PRK14963 78 AVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS--------------KSAFNALL 137 (504)
T ss_pred HHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccC--------------HHHHHHHH
Confidence 134444321 1123456666555443 346799999998752 34578888
Q ss_pred HhhcCCCCCCcEEEEecCCCCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCCC-cccHHHHHHHCCCCCH
Q 004267 610 TEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSK-DVDLRALAKYTQGFSG 688 (764)
Q Consensus 610 ~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~-~~~l~~la~~~~g~sg 688 (764)
..|+.. ...+++|.+||.++.+.+.+.+ |+. .+.|++|+.++....++..+++.++.- +..+..+++.+.| +.
T Consensus 138 k~LEep--~~~t~~Il~t~~~~kl~~~I~S--Rc~-~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~G-dl 211 (504)
T PRK14963 138 KTLEEP--PEHVIFILATTEPEKMPPTILS--RTQ-HFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADG-AM 211 (504)
T ss_pred HHHHhC--CCCEEEEEEcCChhhCChHHhc--ceE-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 888864 3456777778888999999887 875 899999999999999999887766542 3346677777764 55
Q ss_pred HHHHHHHHHHH
Q 004267 689 ADITEICQRAC 699 (764)
Q Consensus 689 ~di~~~~~~a~ 699 (764)
+++.+.++.+.
T Consensus 212 R~aln~Lekl~ 222 (504)
T PRK14963 212 RDAESLLERLL 222 (504)
T ss_pred HHHHHHHHHHH
Confidence 66666666543
No 144
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.41 E-value=1.4e-12 Score=154.24 Aligned_cols=184 Identities=20% Similarity=0.273 Sum_probs=129.6
Q ss_pred ccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCC----------------
Q 004267 478 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA---------------- 541 (764)
Q Consensus 478 v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~---------------- 541 (764)
.+|++|+|++.+++.|+..+.. + +.+..+||+||+|||||++|+++|+.+.+
T Consensus 12 ~~f~eiiGqe~v~~~L~~~i~~-----------~-ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~ 79 (824)
T PRK07764 12 ATFAEVIGQEHVTEPLSTALDS-----------G-RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCV 79 (824)
T ss_pred CCHHHhcCcHHHHHHHHHHHHh-----------C-CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHH
Confidence 5689999999999988776542 1 23345899999999999999999998753
Q ss_pred ----------eeEEEecccchhcccCcchHHHHHHHHH----HhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHH
Q 004267 542 ----------NFISVKGPELLTMWFGESEANVREIFDK----ARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQ 607 (764)
Q Consensus 542 ----------~~i~v~~~~l~~~~~g~se~~i~~~f~~----a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~ 607 (764)
.++.+++... .+-..||++-+. .......|+||||+|.|- ....|.
T Consensus 80 ~~~~g~~~~~dv~eidaas~------~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt--------------~~a~Na 139 (824)
T PRK07764 80 ALAPGGPGSLDVTEIDAASH------GGVDDARELRERAFFAPAESRYKIFIIDEAHMVT--------------PQGFNA 139 (824)
T ss_pred HHHcCCCCCCcEEEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEechhhcC--------------HHHHHH
Confidence 1233333211 112344544333 334556799999999973 345778
Q ss_pred HHHhhcCCCCCCcEEEEecCCCCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCCCc-ccHHHHHHHCCCC
Q 004267 608 LLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKD-VDLRALAKYTQGF 686 (764)
Q Consensus 608 lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~-~~l~~la~~~~g~ 686 (764)
||+.|+... ..+++|++|+.++.|-+.+.+ |+ .++.|..++.++..++++..+++.++.-+ ..+..+++...|
T Consensus 140 LLK~LEEpP--~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgG- 213 (824)
T PRK07764 140 LLKIVEEPP--EHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGG- 213 (824)
T ss_pred HHHHHhCCC--CCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 888888643 356666777888888888876 77 48899999999999999988877666532 335667777654
Q ss_pred CHHHHHHHHHHHH
Q 004267 687 SGADITEICQRAC 699 (764)
Q Consensus 687 sg~di~~~~~~a~ 699 (764)
+.+++.+++...+
T Consensus 214 dlR~Al~eLEKLi 226 (824)
T PRK07764 214 SVRDSLSVLDQLL 226 (824)
T ss_pred CHHHHHHHHHHHH
Confidence 6777777766654
No 145
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.40 E-value=2.2e-12 Score=147.23 Aligned_cols=186 Identities=20% Similarity=0.276 Sum_probs=131.5
Q ss_pred ccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCC----------------
Q 004267 478 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA---------------- 541 (764)
Q Consensus 478 v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~---------------- 541 (764)
.+|++|.|++.+++.|+..+.. + +.+..+||+||+||||||+|+++|+.+.+
T Consensus 10 ~~f~eivGq~~i~~~L~~~i~~-----------~-r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~ 77 (584)
T PRK14952 10 ATFAEVVGQEHVTEPLSSALDA-----------G-RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCV 77 (584)
T ss_pred CcHHHhcCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHH
Confidence 4689999999999988876542 1 23345899999999999999999997643
Q ss_pred ----------eeEEEecccchhcccCcchHHHHHHHHHHh----hCCCeEEEEecccchhhccCCCCCCCCcchHHHHHH
Q 004267 542 ----------NFISVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQ 607 (764)
Q Consensus 542 ----------~~i~v~~~~l~~~~~g~se~~i~~~f~~a~----~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~ 607 (764)
.++.++++.. .+-..+|++-+.+. .....|++|||++.+- ....|.
T Consensus 78 ~i~~~~~~~~dvieidaas~------~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt--------------~~A~NA 137 (584)
T PRK14952 78 ALAPNGPGSIDVVELDAASH------GGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVT--------------TAGFNA 137 (584)
T ss_pred HhhcccCCCceEEEeccccc------cCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCC--------------HHHHHH
Confidence 2333333211 12344555544443 2345799999999873 235788
Q ss_pred HHHhhcCCCCCCcEEEEecCCCCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCCCc-ccHHHHHHHCCCC
Q 004267 608 LLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKD-VDLRALAKYTQGF 686 (764)
Q Consensus 608 lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~-~~l~~la~~~~g~ 686 (764)
||..|+.. ...+++|++|+.++.|.+.+++ |+ .++.|.+++.++..+.++..+++.++.-+ ..+..+++... .
T Consensus 138 LLK~LEEp--p~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~-G 211 (584)
T PRK14952 138 LLKIVEEP--PEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGG-G 211 (584)
T ss_pred HHHHHhcC--CCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-C
Confidence 89999863 4467777777888899898887 76 58999999999999899888877665432 33555666554 5
Q ss_pred CHHHHHHHHHHHHHH
Q 004267 687 SGADITEICQRACKY 701 (764)
Q Consensus 687 sg~di~~~~~~a~~~ 701 (764)
+.+++.+++..++..
T Consensus 212 dlR~aln~Ldql~~~ 226 (584)
T PRK14952 212 SPRDTLSVLDQLLAG 226 (584)
T ss_pred CHHHHHHHHHHHHhc
Confidence 778888888776543
No 146
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=2.1e-12 Score=146.72 Aligned_cols=183 Identities=19% Similarity=0.284 Sum_probs=126.4
Q ss_pred CccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCe--------------
Q 004267 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 542 (764)
Q Consensus 477 ~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~-------------- 542 (764)
..+|++|.|++.+++.|...+.. + +....+||+||+|||||++|+++|+.+.+.
T Consensus 12 P~sf~dIiGQe~v~~~L~~ai~~-----------~-ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC 79 (624)
T PRK14959 12 PQTFAEVAGQETVKAILSRAAQE-----------N-RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQC 79 (624)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHH
Confidence 35689999999999888776542 1 223569999999999999999999987542
Q ss_pred ----------eEEEecccchhcccCcchHHHHHHHHHH----hhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHH
Q 004267 543 ----------FISVKGPELLTMWFGESEANVREIFDKA----RQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 608 (764)
Q Consensus 543 ----------~i~v~~~~l~~~~~g~se~~i~~~f~~a----~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~l 608 (764)
++.+++..- ..-..++.+.+.+ ......|+||||+|.+. ....+.|
T Consensus 80 ~~i~~g~hpDv~eId~a~~------~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt--------------~~a~naL 139 (624)
T PRK14959 80 RKVTQGMHVDVVEIDGASN------RGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT--------------REAFNAL 139 (624)
T ss_pred HHHhcCCCCceEEEecccc------cCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCC--------------HHHHHHH
Confidence 344443210 1123344433332 23445799999999873 2346888
Q ss_pred HHhhcCCCCCCcEEEEecCCCCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCCCC
Q 004267 609 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS-KDVDLRALAKYTQGFS 687 (764)
Q Consensus 609 L~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~~g~s 687 (764)
|..|+.. ...+++|++||.++.+.+.+++ |+. ++.|++++.++...+++..+.+.++. ++..+..+++.+.| +
T Consensus 140 Lk~LEEP--~~~~ifILaTt~~~kll~TI~S--Rcq-~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~G-d 213 (624)
T PRK14959 140 LKTLEEP--PARVTFVLATTEPHKFPVTIVS--RCQ-HFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAG-S 213 (624)
T ss_pred HHHhhcc--CCCEEEEEecCChhhhhHHHHh--hhh-ccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 8888863 3467777788888888888776 875 78999999999999998888766543 33346777777654 4
Q ss_pred HHHHHHHHHH
Q 004267 688 GADITEICQR 697 (764)
Q Consensus 688 g~di~~~~~~ 697 (764)
.+++.+++..
T Consensus 214 lR~Al~lLeq 223 (624)
T PRK14959 214 VRDSMSLLGQ 223 (624)
T ss_pred HHHHHHHHHH
Confidence 4555555543
No 147
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.38 E-value=2.5e-12 Score=143.87 Aligned_cols=172 Identities=17% Similarity=0.290 Sum_probs=113.7
Q ss_pred cceeeeCCCCCChhHHHHHHHHHh-----CCeeEEEecccchhcccCcch-HHHHHHHHHHhhCCCeEEEEecccchhhc
Q 004267 516 KGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLTMWFGESE-ANVREIFDKARQSAPCVLFFDELDSIATQ 589 (764)
Q Consensus 516 ~gill~GppGtGKT~lak~lA~~~-----~~~~i~v~~~~l~~~~~g~se-~~i~~~f~~a~~~~p~iifiDEid~l~~~ 589 (764)
..++||||+|||||+|++++++++ +..++.+++.++...+..... ..+.. |.......+.+|++||++.+.+.
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~~ 209 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIGK 209 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcCc
Confidence 459999999999999999999975 456788888887665432211 12222 33333335789999999998653
Q ss_pred cCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCCC---CCccCCCCCccc--eEEeecCCCHHHHHHHHHHH
Q 004267 590 RGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDI---IDPALLRPGRLD--QLIYIPLPDEDSRHQIFKAC 664 (764)
Q Consensus 590 r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~---ld~allrpgRf~--~~i~~~~p~~~~r~~Il~~~ 664 (764)
. ... .+|+..++.+...++.+|+++++.|.. +++.+.+ ||. .++.+++||.+.|..|++..
T Consensus 210 ~--------~~q----~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~ 275 (440)
T PRK14088 210 T--------GVQ----TELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKM 275 (440)
T ss_pred H--------HHH----HHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHH
Confidence 1 111 223333333323344566666666765 4566776 764 68889999999999999999
Q ss_pred hccCCCCC-cccHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q 004267 665 LRKSPVSK-DVDLRALAKYTQGFSGADITEICQRACKYAI 703 (764)
Q Consensus 665 ~~~~~~~~-~~~l~~la~~~~g~sg~di~~~~~~a~~~a~ 703 (764)
++..++.- +.-++.||+...| +.++|..++......+.
T Consensus 276 ~~~~~~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~l~~~~~ 314 (440)
T PRK14088 276 LEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYKE 314 (440)
T ss_pred HHhcCCCCCHHHHHHHHhcccc-CHHHHHHHHHHHHHHHH
Confidence 86544432 2236777777654 78888888877655554
No 148
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.38 E-value=4e-12 Score=148.73 Aligned_cols=181 Identities=25% Similarity=0.387 Sum_probs=121.9
Q ss_pred ccccccccchhhhh---cccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccchhc
Q 004267 478 VSWEDIGGLENVKR---ELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM 554 (764)
Q Consensus 478 v~~~~i~g~~~~k~---~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~~~ 554 (764)
-+++++.|++++.. .|.+.+.. ....+++|+|||||||||+|+++|+..+..|+.+++...
T Consensus 25 ~tldd~vGQe~ii~~~~~L~~~i~~-------------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~--- 88 (725)
T PRK13341 25 RTLEEFVGQDHILGEGRLLRRAIKA-------------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA--- 88 (725)
T ss_pred CcHHHhcCcHHHhhhhHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh---
Confidence 45688888887763 23333221 122469999999999999999999999999988876421
Q ss_pred ccCcchHHHHHHHHHHh-----hCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecC--
Q 004267 555 WFGESEANVREIFDKAR-----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGAT-- 627 (764)
Q Consensus 555 ~~g~se~~i~~~f~~a~-----~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aT-- 627 (764)
..+.++.++..+. .....++||||||.+... ..+.|+..++. ..+++|++|
T Consensus 89 ----~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~--------------qQdaLL~~lE~----g~IiLI~aTTe 146 (725)
T PRK13341 89 ----GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKA--------------QQDALLPWVEN----GTITLIGATTE 146 (725)
T ss_pred ----hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHH--------------HHHHHHHHhcC----ceEEEEEecCC
Confidence 1233455554442 123569999999987431 23445555542 456677665
Q ss_pred CCCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhc-------cCCCC-CcccHHHHHHHCCCCCHHHHHHHHHHHH
Q 004267 628 NRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLR-------KSPVS-KDVDLRALAKYTQGFSGADITEICQRAC 699 (764)
Q Consensus 628 n~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~-------~~~~~-~~~~l~~la~~~~g~sg~di~~~~~~a~ 699 (764)
|....+++++++ |+ .++.|++++.+++..|++..+. ...+. ++.-++.|++... -+.+++.++++.|+
T Consensus 147 np~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~-GD~R~lln~Le~a~ 222 (725)
T PRK13341 147 NPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVAN-GDARSLLNALELAV 222 (725)
T ss_pred ChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 334578899987 75 4799999999999999999886 22222 2233677777764 46777778777766
Q ss_pred H
Q 004267 700 K 700 (764)
Q Consensus 700 ~ 700 (764)
.
T Consensus 223 ~ 223 (725)
T PRK13341 223 E 223 (725)
T ss_pred H
Confidence 4
No 149
>PRK06893 DNA replication initiation factor; Validated
Probab=99.38 E-value=5.6e-12 Score=129.16 Aligned_cols=160 Identities=14% Similarity=0.179 Sum_probs=100.7
Q ss_pred ceeeeCCCCCChhHHHHHHHHHh---CCeeEEEecccchhcccCcchHHHHHHHHHHhhCCCeEEEEecccchhhccCCC
Q 004267 517 GVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSS 593 (764)
Q Consensus 517 gill~GppGtGKT~lak~lA~~~---~~~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~ 593 (764)
.++||||||||||+|++++|++. +.....+...+. ......+++..+ ...++++||++.+.+.+
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~--------~~~~~~~~~~~~--~~dlLilDDi~~~~~~~--- 107 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKS--------QYFSPAVLENLE--QQDLVCLDDLQAVIGNE--- 107 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHh--------hhhhHHHHhhcc--cCCEEEEeChhhhcCCh---
Confidence 48999999999999999999975 223333333211 111123344433 34699999999985421
Q ss_pred CCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCCCCC---ccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCC
Q 004267 594 VGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIID---PALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPV 670 (764)
Q Consensus 594 ~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld---~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~ 670 (764)
.....+-.+++.+.. ....++|++++..|..++ |.+.+..++...+.+++||.++|.+|++.......+
T Consensus 108 ------~~~~~l~~l~n~~~~--~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l 179 (229)
T PRK06893 108 ------EWELAIFDLFNRIKE--QGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGI 179 (229)
T ss_pred ------HHHHHHHHHHHHHHH--cCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCC
Confidence 122233333333321 223345566666677654 788874555689999999999999999988865544
Q ss_pred CC-cccHHHHHHHCCCCCHHHHHHHHHHH
Q 004267 671 SK-DVDLRALAKYTQGFSGADITEICQRA 698 (764)
Q Consensus 671 ~~-~~~l~~la~~~~g~sg~di~~~~~~a 698 (764)
.- +.-++.|+++.+| +.+.+.+++...
T Consensus 180 ~l~~~v~~~L~~~~~~-d~r~l~~~l~~l 207 (229)
T PRK06893 180 ELSDEVANFLLKRLDR-DMHTLFDALDLL 207 (229)
T ss_pred CCCHHHHHHHHHhccC-CHHHHHHHHHHH
Confidence 32 2336677777664 666666666543
No 150
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.38 E-value=6.6e-12 Score=129.13 Aligned_cols=161 Identities=24% Similarity=0.451 Sum_probs=109.3
Q ss_pred cceeeeCCCCCChhHHHHHHHHHhCCe---eEEEecccchhcccCcchHHHHHHHHHHhhC-----CCeEEEEecccchh
Q 004267 516 KGVLFYGPPGCGKTLLAKAIANECQAN---FISVKGPELLTMWFGESEANVREIFDKARQS-----APCVLFFDELDSIA 587 (764)
Q Consensus 516 ~gill~GppGtGKT~lak~lA~~~~~~---~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~-----~p~iifiDEid~l~ 587 (764)
.+++|+||||||||+||+.++.....+ |+.++... ..-+.+|.+|+.++.. ...|||+|||+++.
T Consensus 163 pSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~-------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFN 235 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN-------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFN 235 (554)
T ss_pred CceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccc-------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhh
Confidence 359999999999999999999987665 77776532 3456799999988653 35799999999975
Q ss_pred hccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecC--CCCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHh
Q 004267 588 TQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGAT--NRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACL 665 (764)
Q Consensus 588 ~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aT--n~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~ 665 (764)
... -..||-.. ..+.+++|+|| |..-.|+.||++ |+- ++.......++...||..-.
T Consensus 236 ksQ--------------QD~fLP~V----E~G~I~lIGATTENPSFqln~aLlS--RC~-VfvLekL~~n~v~~iL~rai 294 (554)
T KOG2028|consen 236 KSQ--------------QDTFLPHV----ENGDITLIGATTENPSFQLNAALLS--RCR-VFVLEKLPVNAVVTILMRAI 294 (554)
T ss_pred hhh--------------hhccccee----ccCceEEEecccCCCccchhHHHHh--ccc-eeEeccCCHHHHHHHHHHHH
Confidence 421 12344433 35567888877 666789999998 874 66667777778888887633
Q ss_pred c---c--C---CCCC------cccHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q 004267 666 R---K--S---PVSK------DVDLRALAKYTQGFSGADITEICQRACKYAIR 704 (764)
Q Consensus 666 ~---~--~---~~~~------~~~l~~la~~~~g~sg~di~~~~~~a~~~a~~ 704 (764)
. + . ++.. +--++.++..++|-.-+.+..+--.+.+.+.|
T Consensus 295 a~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aLN~Lems~~m~~tr 347 (554)
T KOG2028|consen 295 ASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAALNALEMSLSMFCTR 347 (554)
T ss_pred HhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhh
Confidence 2 1 1 2221 22367788888875555555443333343333
No 151
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=3.9e-12 Score=145.60 Aligned_cols=186 Identities=19% Similarity=0.311 Sum_probs=132.8
Q ss_pred ccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCC----------------
Q 004267 478 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA---------------- 541 (764)
Q Consensus 478 v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~---------------- 541 (764)
.+|+++.|++.+.+.|...+... +.+..+||+||+||||||+|+++|+.+++
T Consensus 13 ~~f~dviGQe~vv~~L~~~l~~~------------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~ 80 (618)
T PRK14951 13 RSFSEMVGQEHVVQALTNALTQQ------------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGV 80 (618)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCc
Confidence 46899999999999887765421 23345899999999999999999998653
Q ss_pred -------------eeEEEecccchhcccCcchHHHHHHHHHHhhCC----CeEEEEecccchhhccCCCCCCCCcchHHH
Q 004267 542 -------------NFISVKGPELLTMWFGESEANVREIFDKARQSA----PCVLFFDELDSIATQRGSSVGDAGGAADRV 604 (764)
Q Consensus 542 -------------~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~~----p~iifiDEid~l~~~r~~~~~~~~~~~~~~ 604 (764)
.++.+++.. ..+-..+|++.+.+...+ ..|++|||+|.+.. ..
T Consensus 81 C~~C~~i~~g~h~D~~eldaas------~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~--------------~a 140 (618)
T PRK14951 81 CQACRDIDSGRFVDYTELDAAS------NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTN--------------TA 140 (618)
T ss_pred cHHHHHHHcCCCCceeecCccc------ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCH--------------HH
Confidence 122332221 112346777777654332 56999999999742 34
Q ss_pred HHHHHHhhcCCCCCCcEEEEecCCCCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCCCc-ccHHHHHHHC
Q 004267 605 LNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKD-VDLRALAKYT 683 (764)
Q Consensus 605 ~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~-~~l~~la~~~ 683 (764)
.|.||..|+.. ...+.+|++|+.++.+.+.+++ |+ ..++|..++.++..+.++..+++.++.-+ ..+..|++.+
T Consensus 141 ~NaLLKtLEEP--P~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s 215 (618)
T PRK14951 141 FNAMLKTLEEP--PEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAA 215 (618)
T ss_pred HHHHHHhcccC--CCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 77888888863 3456666677778888888776 87 68999999999999999888876665533 3467788877
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 004267 684 QGFSGADITEICQRACKY 701 (764)
Q Consensus 684 ~g~sg~di~~~~~~a~~~ 701 (764)
.| +.+++.+++..+...
T Consensus 216 ~G-slR~al~lLdq~ia~ 232 (618)
T PRK14951 216 RG-SMRDALSLTDQAIAF 232 (618)
T ss_pred CC-CHHHHHHHHHHHHHh
Confidence 75 778887777655433
No 152
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.37 E-value=4.5e-12 Score=139.18 Aligned_cols=186 Identities=24% Similarity=0.364 Sum_probs=132.3
Q ss_pred CccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCC---------------
Q 004267 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 541 (764)
Q Consensus 477 ~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~--------------- 541 (764)
...|+++.|++.+++.|.+.+.. | ..+..+||+||||+|||++|+++|..+..
T Consensus 10 p~~~~~iig~~~~~~~l~~~~~~-----------~-~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c 77 (355)
T TIGR02397 10 PQTFEDVIGQEHIVQTLKNAIKN-----------G-RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESC 77 (355)
T ss_pred CCcHhhccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 46789999999999888765532 1 23456899999999999999999987532
Q ss_pred ---------eeEEEecccchhcccCcchHHHHHHHHHHhhCC----CeEEEEecccchhhccCCCCCCCCcchHHHHHHH
Q 004267 542 ---------NFISVKGPELLTMWFGESEANVREIFDKARQSA----PCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 608 (764)
Q Consensus 542 ---------~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~~----p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~l 608 (764)
+++.+++.+ ..+...++.+++.+...+ ..|+++||+|.+. ....+.|
T Consensus 78 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~--------------~~~~~~L 137 (355)
T TIGR02397 78 KEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS--------------KSAFNAL 137 (355)
T ss_pred HHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC--------------HHHHHHH
Confidence 233443321 123446788888765432 3599999998863 2356778
Q ss_pred HHhhcCCCCCCcEEEEecCCCCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCCC-cccHHHHHHHCCCCC
Q 004267 609 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSK-DVDLRALAKYTQGFS 687 (764)
Q Consensus 609 L~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~-~~~l~~la~~~~g~s 687 (764)
|..++.. ...+++|++||.++.+.+++.+ |+. .+.|++|+.++..++++..+++.++.- +..+..++..+.| +
T Consensus 138 l~~le~~--~~~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g-~ 211 (355)
T TIGR02397 138 LKTLEEP--PEHVVFILATTEPHKIPATILS--RCQ-RFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADG-S 211 (355)
T ss_pred HHHHhCC--ccceeEEEEeCCHHHHHHHHHh--hee-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 8888763 3456677777888888888887 874 789999999999999999887766532 2345666777654 6
Q ss_pred HHHHHHHHHHHHH
Q 004267 688 GADITEICQRACK 700 (764)
Q Consensus 688 g~di~~~~~~a~~ 700 (764)
.+.+.+.+..+..
T Consensus 212 ~~~a~~~lekl~~ 224 (355)
T TIGR02397 212 LRDALSLLDQLIS 224 (355)
T ss_pred hHHHHHHHHHHHh
Confidence 6666666655543
No 153
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.37 E-value=8e-12 Score=141.06 Aligned_cols=62 Identities=16% Similarity=0.217 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCChhhhc
Q 004267 288 SNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRR 363 (764)
Q Consensus 288 ~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld~al~r 363 (764)
++.|..+..+.-..|++|++|| |.+..+-..+.+|-+.+..+.. .||..||+.+.+|....+
T Consensus 158 ~r~Rv~LA~aL~~~pDlLLLDE----------PTNHLD~~~i~WLe~~L~~~~g----tviiVSHDR~FLd~V~t~ 219 (530)
T COG0488 158 WRRRVALARALLEEPDLLLLDE----------PTNHLDLESIEWLEDYLKRYPG----TVIVVSHDRYFLDNVATH 219 (530)
T ss_pred HHHHHHHHHHHhcCCCEEEEcC----------CCcccCHHHHHHHHHHHHhCCC----cEEEEeCCHHHHHHHhhh
Confidence 4567777788888999999999 7788888888899888876654 444567877766665544
No 154
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.37 E-value=4.5e-12 Score=141.39 Aligned_cols=168 Identities=13% Similarity=0.217 Sum_probs=109.7
Q ss_pred cceeeeCCCCCChhHHHHHHHHHh---CCeeEEEecccchhcccCcchHHHHHHHHHHhhCCCeEEEEecccchhhccCC
Q 004267 516 KGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGS 592 (764)
Q Consensus 516 ~gill~GppGtGKT~lak~lA~~~---~~~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~ 592 (764)
.+++||||+|+|||+|++++++++ +..++.++..++...+.......-...|..... .+.+++|||++.+.++.
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~~-~~dvLiIDDiq~l~~k~-- 218 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFYR-NVDALFIEDIEVFSGKG-- 218 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHcc-cCCEEEEcchhhhcCCh--
Confidence 569999999999999999999975 577888888776554432211111223544433 45699999999975421
Q ss_pred CCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCC---CCCccCCCCCccc--eEEeecCCCHHHHHHHHHHHhcc
Q 004267 593 SVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPD---IIDPALLRPGRLD--QLIYIPLPDEDSRHQIFKACLRK 667 (764)
Q Consensus 593 ~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~---~ld~allrpgRf~--~~i~~~~p~~~~r~~Il~~~~~~ 667 (764)
...+.+-.+++.+ ...++.+|+++++.|. .+++++.+ ||. ..+.+++|+.++|..|++..++.
T Consensus 219 -------~~qeelf~l~N~l---~~~~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~ 286 (445)
T PRK12422 219 -------ATQEEFFHTFNSL---HTEGKLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEA 286 (445)
T ss_pred -------hhHHHHHHHHHHH---HHCCCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHH
Confidence 1122222222222 1223445555555554 46788887 985 88999999999999999999977
Q ss_pred CCCCCccc-HHHHHHHCCCCCHHHHHHHHHHHH
Q 004267 668 SPVSKDVD-LRALAKYTQGFSGADITEICQRAC 699 (764)
Q Consensus 668 ~~~~~~~~-l~~la~~~~g~sg~di~~~~~~a~ 699 (764)
.++.-+.+ ++.+|.... -+.+++.+.+...+
T Consensus 287 ~~~~l~~evl~~la~~~~-~dir~L~g~l~~l~ 318 (445)
T PRK12422 287 LSIRIEETALDFLIEALS-SNVKSLLHALTLLA 318 (445)
T ss_pred cCCCCCHHHHHHHHHhcC-CCHHHHHHHHHHHH
Confidence 66543333 455776655 36677777666654
No 155
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.37 E-value=9.3e-12 Score=142.20 Aligned_cols=190 Identities=19% Similarity=0.275 Sum_probs=122.8
Q ss_pred eeeeCCCCCChhHHHHHHHHHh----------CCeeEEEecccchhcc----------cC-------cchHHHHHHHHHH
Q 004267 518 VLFYGPPGCGKTLLAKAIANEC----------QANFISVKGPELLTMW----------FG-------ESEANVREIFDKA 570 (764)
Q Consensus 518 ill~GppGtGKT~lak~lA~~~----------~~~~i~v~~~~l~~~~----------~g-------~se~~i~~~f~~a 570 (764)
++++|+||||||++++.+..++ .+.++.|+|..+...+ .| .+...+..+|...
T Consensus 784 LYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L 863 (1164)
T PTZ00112 784 LYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQN 863 (1164)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhh
Confidence 5699999999999999998765 2567889985533221 01 1234566677655
Q ss_pred h--hCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCC---CCCCCccCCCCCccce
Q 004267 571 R--QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNR---PDIIDPALLRPGRLDQ 645 (764)
Q Consensus 571 ~--~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~---~~~ld~allrpgRf~~ 645 (764)
. .....||+|||||.|... ...++-.|+.... ....+++|||++|. ++.|+|.+.. ||..
T Consensus 864 ~k~~r~v~IIILDEID~L~kK-----------~QDVLYnLFR~~~--~s~SKLiLIGISNdlDLperLdPRLRS--RLg~ 928 (1164)
T PTZ00112 864 KKDNRNVSILIIDEIDYLITK-----------TQKVLFTLFDWPT--KINSKLVLIAISNTMDLPERLIPRCRS--RLAF 928 (1164)
T ss_pred hcccccceEEEeehHhhhCcc-----------HHHHHHHHHHHhh--ccCCeEEEEEecCchhcchhhhhhhhh--cccc
Confidence 2 234579999999999752 2345555554332 23457999999986 5677888876 6653
Q ss_pred -EEeecCCCHHHHHHHHHHHhccCC-CCCcccHHHHHHHCCCC--CHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCCC
Q 004267 646 -LIYIPLPDEDSRHQIFKACLRKSP-VSKDVDLRALAKYTQGF--SGADITEICQRACKYAIRENIEKDIERERRRRDNP 721 (764)
Q Consensus 646 -~i~~~~p~~~~r~~Il~~~~~~~~-~~~~~~l~~la~~~~g~--sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~ 721 (764)
.|.|++++.+++.+||+..+.... +-.+.-++.+|+..... ..+..-.+|+.|+..+
T Consensus 929 eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEik------------------- 989 (1164)
T PTZ00112 929 GRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENK------------------- 989 (1164)
T ss_pred ccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhc-------------------
Confidence 488899999999999999887532 22233356666643322 2233334555554310
Q ss_pred ccccccccccccccccHHHHHHHHHhcCCC
Q 004267 722 EAMDEDAAEDEVSEIKAAHFEESMKFARRS 751 (764)
Q Consensus 722 ~~~~~~~~~~~~~~i~~~~f~~a~~~~~~s 751 (764)
. ...|+.+|+.+|+.++..+
T Consensus 990 ---------e-gskVT~eHVrkAleeiE~s 1009 (1164)
T PTZ00112 990 ---------R-GQKIVPRDITEATNQLFDS 1009 (1164)
T ss_pred ---------C-CCccCHHHHHHHHHHHHhh
Confidence 0 1258889999998877544
No 156
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.37 E-value=7.1e-12 Score=144.44 Aligned_cols=192 Identities=23% Similarity=0.324 Sum_probs=133.7
Q ss_pred CccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEE----------
Q 004267 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISV---------- 546 (764)
Q Consensus 477 ~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v---------- 546 (764)
..+|++|.|++.+.+.|+..+... +.+..+||+||+|+|||++|+++|..+.+.--..
T Consensus 14 P~~f~dIiGQe~~v~~L~~aI~~~------------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~ 81 (725)
T PRK07133 14 PKTFDDIVGQDHIVQTLKNIIKSN------------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIE 81 (725)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHH
Confidence 457899999999998887765421 2345589999999999999999999764321000
Q ss_pred ---ecccch--hcccCcchHHHHHHHHHHhhC----CCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCC
Q 004267 547 ---KGPELL--TMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSA 617 (764)
Q Consensus 547 ---~~~~l~--~~~~g~se~~i~~~f~~a~~~----~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~ 617 (764)
..++++ ......+...+|++.+.+... ...|++|||+|.+.. ...+.||..|+..
T Consensus 82 ~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~--------------~A~NALLKtLEEP-- 145 (725)
T PRK07133 82 NVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK--------------SAFNALLKTLEEP-- 145 (725)
T ss_pred hhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH--------------HHHHHHHHHhhcC--
Confidence 001111 000002245588888777643 357999999998732 3578899988864
Q ss_pred CCcEEEEecCCCCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCCCc-ccHHHHHHHCCCCCHHHHHHHHH
Q 004267 618 KKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKD-VDLRALAKYTQGFSGADITEICQ 696 (764)
Q Consensus 618 ~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~-~~l~~la~~~~g~sg~di~~~~~ 696 (764)
...+++|++|+.++.|.+.+++ |+. .+.|.+|+.++....++..+.+.++.-+ ..+..+|..+.| +.+++.+++.
T Consensus 146 P~~tifILaTte~~KLl~TI~S--Rcq-~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~G-slR~AlslLe 221 (725)
T PRK07133 146 PKHVIFILATTEVHKIPLTILS--RVQ-RFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSG-SLRDALSIAE 221 (725)
T ss_pred CCceEEEEEcCChhhhhHHHHh--hce-eEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 3466777777888999999887 885 8999999999999999888776655432 236677777764 6677777766
Q ss_pred HHHH
Q 004267 697 RACK 700 (764)
Q Consensus 697 ~a~~ 700 (764)
.+..
T Consensus 222 kl~~ 225 (725)
T PRK07133 222 QVSI 225 (725)
T ss_pred HHHH
Confidence 6543
No 157
>PRK04195 replication factor C large subunit; Provisional
Probab=99.36 E-value=1.8e-11 Score=139.25 Aligned_cols=181 Identities=30% Similarity=0.410 Sum_probs=126.6
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhhh
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~ 280 (764)
+..+-+++++.|.++.++.+++++..-.. | .++.++||+|||||||||+|+++|++++..++.+++++...
T Consensus 7 KyrP~~l~dlvg~~~~~~~l~~~l~~~~~--------g-~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~ 77 (482)
T PRK04195 7 KYRPKTLSDVVGNEKAKEQLREWIESWLK--------G-KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRT 77 (482)
T ss_pred hcCCCCHHHhcCCHHHHHHHHHHHHHHhc--------C-CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccccc
Confidence 45667899999999999999998864211 1 23678999999999999999999999999999998876432
Q ss_pred hccchhHHHHHHHHHHHHh------cCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCC
Q 004267 281 KLAGESESNLRKAFEEAEK------NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRP 354 (764)
Q Consensus 281 ~~~g~~~~~l~~vf~~a~~------~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~ 354 (764)
...++.+...+.. ..+.+|+|||+|.+..+.. ......|+..++. ....+|.++|.+
T Consensus 78 ------~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d-------~~~~~aL~~~l~~----~~~~iIli~n~~ 140 (482)
T PRK04195 78 ------ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNED-------RGGARAILELIKK----AKQPIILTANDP 140 (482)
T ss_pred ------HHHHHHHHHHhhccCcccCCCCeEEEEecCcccccccc-------hhHHHHHHHHHHc----CCCCEEEeccCc
Confidence 1223333333322 2467999999998865321 1233556666653 233455577888
Q ss_pred CCCCh-hhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCC-CchhhhHHhhhcCCC
Q 004267 355 NSIDP-ALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGY 410 (764)
Q Consensus 355 ~~ld~-al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~ 410 (764)
..+.+ .+++ | ...+.++.|+..+...+++..+....+. ++..+..++..+.|-
T Consensus 141 ~~~~~k~Lrs--r-~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~GD 195 (482)
T PRK04195 141 YDPSLRELRN--A-CLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGD 195 (482)
T ss_pred cccchhhHhc--c-ceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 87776 6665 3 3679999999999999988776554432 344578888877653
No 158
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.36 E-value=5.7e-12 Score=142.54 Aligned_cols=185 Identities=20% Similarity=0.257 Sum_probs=128.1
Q ss_pred ccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCC----------------
Q 004267 478 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA---------------- 541 (764)
Q Consensus 478 v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~---------------- 541 (764)
.+|+++.|++.+.+.|...+.. + +.+..+||+||+|+|||++|+++|..+..
T Consensus 13 ~~f~diiGq~~~v~~L~~~i~~-----------~-rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~ 80 (546)
T PRK14957 13 QSFAEVAGQQHALNSLVHALET-----------Q-KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCV 80 (546)
T ss_pred CcHHHhcCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHH
Confidence 5689999999999887765532 1 23445899999999999999999997643
Q ss_pred --------eeEEEecccchhcccCcchHHHHHHHHHHhh----CCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHH
Q 004267 542 --------NFISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLL 609 (764)
Q Consensus 542 --------~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~----~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL 609 (764)
.++.+++..- . +-..++.+.+.+.. ....|+||||+|.+. ....+.||
T Consensus 81 ~i~~~~~~dlieidaas~----~--gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls--------------~~a~naLL 140 (546)
T PRK14957 81 AINNNSFIDLIEIDAASR----T--GVEETKEILDNIQYMPSQGRYKVYLIDEVHMLS--------------KQSFNALL 140 (546)
T ss_pred HHhcCCCCceEEeecccc----c--CHHHHHHHHHHHHhhhhcCCcEEEEEechhhcc--------------HHHHHHHH
Confidence 2333333211 1 12345666655443 345799999998863 34567888
Q ss_pred HhhcCCCCCCcEEEEecCCCCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCCC-cccHHHHHHHCCCCCH
Q 004267 610 TEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSK-DVDLRALAKYTQGFSG 688 (764)
Q Consensus 610 ~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~-~~~l~~la~~~~g~sg 688 (764)
..|+.. ...+++|++|+.+..+.+.+++ |+ ..++|.+++.++....++..+++.++.- +..+..+++.+. -+.
T Consensus 141 K~LEep--p~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~-Gdl 214 (546)
T PRK14957 141 KTLEEP--PEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAK-GSL 214 (546)
T ss_pred HHHhcC--CCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-CCH
Confidence 888863 3455556566667878777776 88 6999999999998888888877665542 333667777775 477
Q ss_pred HHHHHHHHHHHH
Q 004267 689 ADITEICQRACK 700 (764)
Q Consensus 689 ~di~~~~~~a~~ 700 (764)
+++.+++..+..
T Consensus 215 R~alnlLek~i~ 226 (546)
T PRK14957 215 RDALSLLDQAIS 226 (546)
T ss_pred HHHHHHHHHHHH
Confidence 777777766553
No 159
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.36 E-value=5.5e-12 Score=131.89 Aligned_cols=132 Identities=26% Similarity=0.357 Sum_probs=92.7
Q ss_pred CcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecc------cchhcccCcchHHHH---------------------HHH
Q 004267 515 SKGVLFYGPPGCGKTLLAKAIANECQANFISVKGP------ELLTMWFGESEANVR---------------------EIF 567 (764)
Q Consensus 515 ~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~------~l~~~~~g~se~~i~---------------------~~f 567 (764)
...++|+||||||||++|+++|...+.+|+.+++. ++++.|.|.....+. .++
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 100 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLT 100 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHH
Confidence 34699999999999999999999999999998764 444444433222111 122
Q ss_pred HHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCC--------------CCCcEEEEecCCCCC--
Q 004267 568 DKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS--------------AKKTVFIIGATNRPD-- 631 (764)
Q Consensus 568 ~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~--------------~~~~v~vi~aTn~~~-- 631 (764)
..++. ..++++|||+.+- ..+.+.|+..|+... ...++.||+|+|...
T Consensus 101 ~A~~~--g~~lllDEi~r~~--------------~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~ 164 (262)
T TIGR02640 101 LAVRE--GFTLVYDEFTRSK--------------PETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYA 164 (262)
T ss_pred HHHHc--CCEEEEcchhhCC--------------HHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCcccc
Confidence 22222 3599999999852 234455555554311 113567999999763
Q ss_pred ---CCCccCCCCCccceEEeecCCCHHHHHHHHHHHh
Q 004267 632 ---IIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACL 665 (764)
Q Consensus 632 ---~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~ 665 (764)
.+++++++ || ..++++.|+.++-.+|++.+.
T Consensus 165 g~~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 165 GVHETQDALLD--RL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred ceecccHHHHh--hc-EEEECCCCCHHHHHHHHHHhh
Confidence 56889998 99 589999999999999999875
No 160
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.35 E-value=4.7e-12 Score=144.38 Aligned_cols=185 Identities=23% Similarity=0.296 Sum_probs=130.9
Q ss_pred ccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCe---------------
Q 004267 478 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN--------------- 542 (764)
Q Consensus 478 v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~--------------- 542 (764)
.+|+++.|++.+++.|...+.. -+.+..+||+||+|+||||+|+++|..+.+.
T Consensus 13 ~~f~divGq~~v~~~L~~~i~~------------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~ 80 (527)
T PRK14969 13 KSFSELVGQEHVVRALTNALEQ------------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACL 80 (527)
T ss_pred CcHHHhcCcHHHHHHHHHHHHc------------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHH
Confidence 4689999999999988766542 1234458999999999999999999987542
Q ss_pred ---------eEEEecccchhcccCcchHHHHHHHHHHhhC----CCeEEEEecccchhhccCCCCCCCCcchHHHHHHHH
Q 004267 543 ---------FISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLL 609 (764)
Q Consensus 543 ---------~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~----~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL 609 (764)
++.++++. ......+|++.+.+... ...|+||||+|.+. ....|.||
T Consensus 81 ~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls--------------~~a~naLL 140 (527)
T PRK14969 81 EIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS--------------KSAFNAML 140 (527)
T ss_pred HHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCC--------------HHHHHHHH
Confidence 22222211 12245677777776543 34699999999863 23567889
Q ss_pred HhhcCCCCCCcEEEEecCCCCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCCCc-ccHHHHHHHCCCCCH
Q 004267 610 TEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKD-VDLRALAKYTQGFSG 688 (764)
Q Consensus 610 ~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~-~~l~~la~~~~g~sg 688 (764)
..|+.. ...+++|++|+.++.+.+.+++ |+ ..++|++++.++....++..+++.++..+ ..+..+++.+. .+.
T Consensus 141 K~LEep--p~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~-Gsl 214 (527)
T PRK14969 141 KTLEEP--PEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAA-GSM 214 (527)
T ss_pred HHHhCC--CCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-CCH
Confidence 888873 3456666667777777777776 87 58999999999988888887766555432 33567777765 477
Q ss_pred HHHHHHHHHHHH
Q 004267 689 ADITEICQRACK 700 (764)
Q Consensus 689 ~di~~~~~~a~~ 700 (764)
+++.+++..|..
T Consensus 215 r~al~lldqai~ 226 (527)
T PRK14969 215 RDALSLLDQAIA 226 (527)
T ss_pred HHHHHHHHHHHH
Confidence 777777776554
No 161
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.35 E-value=7.4e-12 Score=128.28 Aligned_cols=166 Identities=16% Similarity=0.221 Sum_probs=108.5
Q ss_pred CCcceeeeCCCCCChhHHHHHHHHHh---CCeeEEEecccchhcccCcchHHHHHHHHHHhhCCCeEEEEecccchhhcc
Q 004267 514 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQR 590 (764)
Q Consensus 514 ~~~gill~GppGtGKT~lak~lA~~~---~~~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r 590 (764)
.+.+++|+||+|||||++|++++..+ +.+++.++++++.... ..+++.... ..+|||||++.+....
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~~~~~~~~--~~lLvIDdi~~l~~~~ 106 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD--------PEVLEGLEQ--ADLVCLDDVEAIAGQP 106 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH--------HHHHhhccc--CCEEEEeChhhhcCCh
Confidence 34569999999999999999999876 4678888887765321 233333322 3599999999874310
Q ss_pred CCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCCCCC---ccCCCCCcc--ceEEeecCCCHHHHHHHHHHHh
Q 004267 591 GSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIID---PALLRPGRL--DQLIYIPLPDEDSRHQIFKACL 665 (764)
Q Consensus 591 ~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld---~allrpgRf--~~~i~~~~p~~~~r~~Il~~~~ 665 (764)
.. ...+-.++..+. ..+..+|+.++..+..++ +.+.+ || ...+.+|+|+.+++..+++.+.
T Consensus 107 --------~~-~~~L~~~l~~~~---~~~~~iIits~~~~~~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~ 172 (226)
T TIGR03420 107 --------EW-QEALFHLYNRVR---EAGGRLLIAGRAAPAQLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRA 172 (226)
T ss_pred --------HH-HHHHHHHHHHHH---HcCCeEEEECCCChHHCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHH
Confidence 01 222333333322 222345554444454433 56665 66 4789999999999999999887
Q ss_pred ccCCCC-CcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q 004267 666 RKSPVS-KDVDLRALAKYTQGFSGADITEICQRACKYAIR 704 (764)
Q Consensus 666 ~~~~~~-~~~~l~~la~~~~g~sg~di~~~~~~a~~~a~~ 704 (764)
.+.++. ++.-+..|++. -+.+.+++.++++++...+..
T Consensus 173 ~~~~~~~~~~~l~~L~~~-~~gn~r~L~~~l~~~~~~~~~ 211 (226)
T TIGR03420 173 ARRGLQLPDEVADYLLRH-GSRDMGSLMALLDALDRASLA 211 (226)
T ss_pred HHcCCCCCHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHH
Confidence 655443 22336677775 456889999999887755444
No 162
>PLN03025 replication factor C subunit; Provisional
Probab=99.35 E-value=8.1e-12 Score=134.70 Aligned_cols=180 Identities=20% Similarity=0.206 Sum_probs=120.0
Q ss_pred ccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhC-----CeeEEEecccch
Q 004267 478 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ-----ANFISVKGPELL 552 (764)
Q Consensus 478 v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~-----~~~i~v~~~~l~ 552 (764)
.+++++.|.+++.+.|+..+.. + ...+++|+||||||||++|+++|+++. ..++.++.++..
T Consensus 10 ~~l~~~~g~~~~~~~L~~~~~~-----------~--~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~ 76 (319)
T PLN03025 10 TKLDDIVGNEDAVSRLQVIARD-----------G--NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDR 76 (319)
T ss_pred CCHHHhcCcHHHHHHHHHHHhc-----------C--CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccc
Confidence 4578899999988877654321 1 123599999999999999999999862 346667766542
Q ss_pred hcccCcchHHHHHHHHH---Hh----hCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEe
Q 004267 553 TMWFGESEANVREIFDK---AR----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIG 625 (764)
Q Consensus 553 ~~~~g~se~~i~~~f~~---a~----~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~ 625 (764)
+ -..++..... .. ...+.|+++||+|.+... ..+.|+..|+.... ...+|.
T Consensus 77 ~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~--------------aq~aL~~~lE~~~~--~t~~il 134 (319)
T PLN03025 77 G------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSG--------------AQQALRRTMEIYSN--TTRFAL 134 (319)
T ss_pred c------HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHH--------------HHHHHHHHHhcccC--CceEEE
Confidence 2 1233333222 11 123579999999997431 23455666654332 344566
Q ss_pred cCCCCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCCCCHHHHHHHHH
Q 004267 626 ATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQ 696 (764)
Q Consensus 626 aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~~g~sg~di~~~~~ 696 (764)
+||.++.+.+++.+ |+. .+.|++|+.++....++..+++.++. ++..+..++....| +-+.+.+.++
T Consensus 135 ~~n~~~~i~~~L~S--Rc~-~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g-DlR~aln~Lq 202 (319)
T PLN03025 135 ACNTSSKIIEPIQS--RCA-IVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG-DMRQALNNLQ 202 (319)
T ss_pred EeCCccccchhHHH--hhh-cccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 77888888888887 874 89999999999999999888765543 23447777777654 4444444444
No 163
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.35 E-value=2.6e-11 Score=136.04 Aligned_cols=177 Identities=19% Similarity=0.259 Sum_probs=122.3
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCC------------
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA------------ 268 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~------------ 268 (764)
...+-+|+++.|.++.++.|+.++... ..+..+||+|||||||||+|+++|+.++.
T Consensus 7 kyRP~~~~divGq~~i~~~L~~~i~~~------------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c 74 (472)
T PRK14962 7 KYRPKTFSEVVGQDHVKKLIINALKKN------------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNEC 74 (472)
T ss_pred HHCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCccc
Confidence 456778999999999988888777642 23456999999999999999999998864
Q ss_pred ------------eEEEEechhhhhhccchhHHHHHHHHHHHHh----cCCeEEEEccccccCCCCCCCchHHHHHHHHHH
Q 004267 269 ------------FFFCINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 332 (764)
Q Consensus 269 ------------~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L 332 (764)
.++.+++.. ...-..++.+.+.+.. ....++||||+|.+.. .....|
T Consensus 75 ~~c~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~-----------~a~~~L 137 (472)
T PRK14962 75 RACRSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTK-----------EAFNAL 137 (472)
T ss_pred HHHHHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHH-----------HHHHHH
Confidence 234444321 1112345555554432 2346999999998732 223556
Q ss_pred HHHhhcccCCCeEEEEEecCCCCCCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCC-CCchhhhHHhhhcCCCc
Q 004267 333 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDDVDLERIAKDTHGYV 411 (764)
Q Consensus 333 l~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l-~~~~~l~~la~~t~g~~ 411 (764)
+..++... ..+++|++|+.+..+++++++ |+ ..+.+..++.++...+++..+....+ .++..+..++..+.|-.
T Consensus 138 Lk~LE~p~--~~vv~Ilattn~~kl~~~L~S--R~-~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~Gdl 212 (472)
T PRK14962 138 LKTLEEPP--SHVVFVLATTNLEKVPPTIIS--RC-QVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGL 212 (472)
T ss_pred HHHHHhCC--CcEEEEEEeCChHhhhHHHhc--Cc-EEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCH
Confidence 66666533 356677777778889999987 76 57899999999988888776543322 23345778888776543
No 164
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.35 E-value=5.6e-12 Score=136.07 Aligned_cols=155 Identities=22% Similarity=0.277 Sum_probs=106.1
Q ss_pred ccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccchhcccC
Q 004267 478 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFG 557 (764)
Q Consensus 478 v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~~~~~g 557 (764)
.+++++.|.+.+++.+...+.. + ..+..++|+||||+|||++|++++++.+.+++.+++++ .. +.
T Consensus 18 ~~~~~~~~~~~~~~~l~~~~~~-----------~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~--~~-~~ 82 (316)
T PHA02544 18 STIDECILPAADKETFKSIVKK-----------G-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD--CR-ID 82 (316)
T ss_pred CcHHHhcCcHHHHHHHHHHHhc-----------C-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc--cc-HH
Confidence 4678999999998888766531 1 22344677999999999999999999998999998876 21 11
Q ss_pred cchHHHHHHHHHHh-hCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCCCCCcc
Q 004267 558 ESEANVREIFDKAR-QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPA 636 (764)
Q Consensus 558 ~se~~i~~~f~~a~-~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~a 636 (764)
.....+........ ...+.++||||+|.+... ... +.|.+.|+... .++.+|++||.++.++++
T Consensus 83 ~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~----------~~~---~~L~~~le~~~--~~~~~Ilt~n~~~~l~~~ 147 (316)
T PHA02544 83 FVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLA----------DAQ---RHLRSFMEAYS--KNCSFIITANNKNGIIEP 147 (316)
T ss_pred HHHHHHHHHHHhhcccCCCeEEEEECcccccCH----------HHH---HHHHHHHHhcC--CCceEEEEcCChhhchHH
Confidence 11111222111111 135689999999986221 122 33334455432 356778899999999999
Q ss_pred CCCCCccceEEeecCCCHHHHHHHHHHHh
Q 004267 637 LLRPGRLDQLIYIPLPDEDSRHQIFKACL 665 (764)
Q Consensus 637 llrpgRf~~~i~~~~p~~~~r~~Il~~~~ 665 (764)
+.+ ||. .+.|+.|+.+++.++++.++
T Consensus 148 l~s--R~~-~i~~~~p~~~~~~~il~~~~ 173 (316)
T PHA02544 148 LRS--RCR-VIDFGVPTKEEQIEMMKQMI 173 (316)
T ss_pred HHh--hce-EEEeCCCCHHHHHHHHHHHH
Confidence 987 995 78999999999988876543
No 165
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.35 E-value=2.3e-11 Score=134.13 Aligned_cols=178 Identities=20% Similarity=0.232 Sum_probs=122.4
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCe-----------
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 269 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~----------- 269 (764)
+..+-+|+++.|.+..+..|+.++... ..+..+||+||+||||||+|+.+|+.++..
T Consensus 11 KyRP~~f~dvVGQe~iv~~L~~~i~~~------------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C 78 (484)
T PRK14956 11 KYRPQFFRDVIHQDLAIGALQNALKSG------------KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNEC 78 (484)
T ss_pred HhCCCCHHHHhChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCC
Confidence 456778999999999999998887641 123458999999999999999999998752
Q ss_pred -------------EEEEechhhhhhccchhHHHHHHHHHHHH----hcCCeEEEEccccccCCCCCCCchHHHHHHHHHH
Q 004267 270 -------------FFCINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 332 (764)
Q Consensus 270 -------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L 332 (764)
++.+++.. ...-..++.+.+.+. .....|+||||+|.+.. ...+.|
T Consensus 79 ~sC~~i~~g~~~dviEIdaas------~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~-----------~A~NAL 141 (484)
T PRK14956 79 TSCLEITKGISSDVLEIDAAS------NRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTD-----------QSFNAL 141 (484)
T ss_pred cHHHHHHccCCccceeechhh------cccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCH-----------HHHHHH
Confidence 22222211 011234455444433 34457999999998842 234667
Q ss_pred HHHhhcccCCCeEEEEEecCCCCCCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCC-CCchhhhHHhhhcCCCc
Q 004267 333 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDDVDLERIAKDTHGYV 411 (764)
Q Consensus 333 l~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l-~~~~~l~~la~~t~g~~ 411 (764)
+..|+.. ...+++|.+|+.++.+.+.+++ |+ ..+.+..++.++-.+.++..+....+ .++..+..+++.+.|-.
T Consensus 142 LKtLEEP--p~~viFILaTte~~kI~~TI~S--RC-q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd~ 216 (484)
T PRK14956 142 LKTLEEP--PAHIVFILATTEFHKIPETILS--RC-QDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSV 216 (484)
T ss_pred HHHhhcC--CCceEEEeecCChhhccHHHHh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCChH
Confidence 7777653 3578888888889999999988 76 45777777777666666666554333 23445788888888754
Q ss_pred h
Q 004267 412 G 412 (764)
Q Consensus 412 ~ 412 (764)
.
T Consensus 217 R 217 (484)
T PRK14956 217 R 217 (484)
T ss_pred H
Confidence 3
No 166
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.34 E-value=9.9e-12 Score=136.93 Aligned_cols=191 Identities=19% Similarity=0.297 Sum_probs=128.4
Q ss_pred CccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccc-----
Q 004267 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL----- 551 (764)
Q Consensus 477 ~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l----- 551 (764)
..+|++++|++.+.+.+...+.. | +.+.+++||||||+|||++|+++|.....+.....+.++
T Consensus 13 P~~~~~iig~~~~~~~l~~~i~~-----------~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~ 80 (367)
T PRK14970 13 PQTFDDVVGQSHITNTLLNAIEN-----------N-HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIF 80 (367)
T ss_pred CCcHHhcCCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceE
Confidence 35689999999998887766542 1 334679999999999999999999986542111000000
Q ss_pred -hhcccCcchHHHHHHHHHHhhC----CCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEec
Q 004267 552 -LTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGA 626 (764)
Q Consensus 552 -~~~~~g~se~~i~~~f~~a~~~----~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~a 626 (764)
++.........++.+++.+... .+.|+|+||+|.+.. ...+.|+..|+.. ....++|++
T Consensus 81 ~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~--------------~~~~~ll~~le~~--~~~~~~Il~ 144 (367)
T PRK14970 81 ELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS--------------AAFNAFLKTLEEP--PAHAIFILA 144 (367)
T ss_pred EeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH--------------HHHHHHHHHHhCC--CCceEEEEE
Confidence 0011112246778888776543 356999999987632 2467788777753 234455556
Q ss_pred CCCCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCCCCHHHHHHHHHHHH
Q 004267 627 TNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRAC 699 (764)
Q Consensus 627 Tn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~~g~sg~di~~~~~~a~ 699 (764)
|+.+..+.+++.+ |+. .+.|++|+.++...++...+++.++. ++..++.++..+.| +.+.+.+.++...
T Consensus 145 ~~~~~kl~~~l~s--r~~-~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~~lekl~ 214 (367)
T PRK14970 145 TTEKHKIIPTILS--RCQ-IFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALSIFDRVV 214 (367)
T ss_pred eCCcccCCHHHHh--cce-eEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 6777888888876 764 78999999999999998888776653 34456777777654 5566655555544
No 167
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.34 E-value=1.2e-11 Score=139.42 Aligned_cols=187 Identities=22% Similarity=0.345 Sum_probs=128.7
Q ss_pred CccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCC---------------
Q 004267 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 541 (764)
Q Consensus 477 ~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~--------------- 541 (764)
..+|+++.|++.+.+.|...+.. -+.+..+|||||+|+|||++|+++|..+.+
T Consensus 12 P~~f~diiGq~~i~~~L~~~i~~------------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc 79 (486)
T PRK14953 12 PKFFKEVIGQEIVVRILKNAVKL------------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENC 79 (486)
T ss_pred CCcHHHccChHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHH
Confidence 34689999999999888766532 123345899999999999999999998653
Q ss_pred ---------eeEEEecccchhcccCcchHHHHHHHHHHhh----CCCeEEEEecccchhhccCCCCCCCCcchHHHHHHH
Q 004267 542 ---------NFISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 608 (764)
Q Consensus 542 ---------~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~----~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~l 608 (764)
.++.++++. ...-..+|.+.+.+.. ..+.|+++||+|.+. ....+.|
T Consensus 80 ~~i~~g~~~d~~eidaas------~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt--------------~~a~naL 139 (486)
T PRK14953 80 VEIDKGSFPDLIEIDAAS------NRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLT--------------KEAFNAL 139 (486)
T ss_pred HHHhcCCCCcEEEEeCcc------CCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcC--------------HHHHHHH
Confidence 112222111 1123346666665543 345799999999863 2345778
Q ss_pred HHhhcCCCCCCcEEEEecCCCCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCCCc-ccHHHHHHHCCCCC
Q 004267 609 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKD-VDLRALAKYTQGFS 687 (764)
Q Consensus 609 L~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~-~~l~~la~~~~g~s 687 (764)
|..|+..+ ..+++|.+|+.++.+.+++.+ |+. .+.|++|+.++....++..++..++.-+ ..+..++..+.| +
T Consensus 140 Lk~LEepp--~~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G-~ 213 (486)
T PRK14953 140 LKTLEEPP--PRTIFILCTTEYDKIPPTILS--RCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEG-G 213 (486)
T ss_pred HHHHhcCC--CCeEEEEEECCHHHHHHHHHH--hce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 88887642 344555556667888888877 775 7999999999999999998887665432 336677777664 6
Q ss_pred HHHHHHHHHHHHHH
Q 004267 688 GADITEICQRACKY 701 (764)
Q Consensus 688 g~di~~~~~~a~~~ 701 (764)
.+++.++++.+...
T Consensus 214 lr~al~~Ldkl~~~ 227 (486)
T PRK14953 214 MRDAASLLDQASTY 227 (486)
T ss_pred HHHHHHHHHHHHHh
Confidence 67777777666543
No 168
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.34 E-value=9.2e-12 Score=140.86 Aligned_cols=171 Identities=15% Similarity=0.267 Sum_probs=115.8
Q ss_pred ceeeeCCCCCChhHHHHHHHHHh-----CCeeEEEecccchhcccCcchHHHHHHHHHHhhCCCeEEEEecccchhhccC
Q 004267 517 GVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRG 591 (764)
Q Consensus 517 gill~GppGtGKT~lak~lA~~~-----~~~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~ 591 (764)
.++|||++|||||+|++++++++ +..++++++.++.+.++..........|.+-.. .+.+|+||||+.+.++.
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~-~~DLLlIDDIq~l~gke- 393 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYR-EMDILLVDDIQFLEDKE- 393 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhh-cCCEEEEehhccccCCH-
Confidence 49999999999999999999975 467889999888876654333323334554333 35799999999986532
Q ss_pred CCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCC-CC---CCCccCCCCCcc--ceEEeecCCCHHHHHHHHHHHh
Q 004267 592 SSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNR-PD---IIDPALLRPGRL--DQLIYIPLPDEDSRHQIFKACL 665 (764)
Q Consensus 592 ~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~-~~---~ld~allrpgRf--~~~i~~~~p~~~~r~~Il~~~~ 665 (764)
...+.+-.+++.+ ...++.+|| |+|+ |. .+++.|.+ || ..++.+..||.+.|.+||+.++
T Consensus 394 --------~tqeeLF~l~N~l---~e~gk~III-TSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka 459 (617)
T PRK14086 394 --------STQEEFFHTFNTL---HNANKQIVL-SSDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKA 459 (617)
T ss_pred --------HHHHHHHHHHHHH---HhcCCCEEE-ecCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHH
Confidence 1122222233333 233333444 5555 33 56788887 77 5677899999999999999999
Q ss_pred ccCCCCCccc-HHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q 004267 666 RKSPVSKDVD-LRALAKYTQGFSGADITEICQRACKYAIR 704 (764)
Q Consensus 666 ~~~~~~~~~~-l~~la~~~~g~sg~di~~~~~~a~~~a~~ 704 (764)
+...+.-+.+ ++.|+.... -+.++|..++......+..
T Consensus 460 ~~r~l~l~~eVi~yLa~r~~-rnvR~LegaL~rL~a~a~~ 498 (617)
T PRK14086 460 VQEQLNAPPEVLEFIASRIS-RNIRELEGALIRVTAFASL 498 (617)
T ss_pred HhcCCCCCHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHh
Confidence 7766654334 566777655 3778888888776555543
No 169
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.34 E-value=2.9e-11 Score=132.54 Aligned_cols=191 Identities=20% Similarity=0.315 Sum_probs=126.1
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeE---------------
Q 004267 206 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFF--------------- 270 (764)
Q Consensus 206 ~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~--------------- 270 (764)
.|++|+|.+..++.|+.++..+..++. .++...+..+||+||||+|||++|+++|..+.+..
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~---~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~ 79 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVA---AAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTV 79 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhcccccc---ccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Confidence 478999999999999999987654322 23334567899999999999999999999874421
Q ss_pred EEEechhhh--h-hccchhHHHHHHHHHHHHh----cCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCC
Q 004267 271 FCINGPEIM--S-KLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRA 343 (764)
Q Consensus 271 i~v~~~~l~--~-~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~ 343 (764)
..-+.+++. . ....-.-..++.+++.+.. ....|+||||+|.+.+. ..+.|+..|+.... .
T Consensus 80 ~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~-----------aanaLLk~LEep~~-~ 147 (394)
T PRK07940 80 LAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTER-----------AANALLKAVEEPPP-R 147 (394)
T ss_pred hcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHH-----------HHHHHHHHhhcCCC-C
Confidence 000001110 0 0001123457777776643 33469999999988432 23567777776432 3
Q ss_pred eEEEEEecCCCCCCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCCCchhhhHHhhhcCCCchHHHHHHH
Q 004267 344 HVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALC 419 (764)
Q Consensus 344 ~v~vI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~ 419 (764)
.++|+ +|+.++.+.|.+++ |+ ..+.++.|+.++..+.|.... .+. ......++..++|..+..+.-+.
T Consensus 148 ~~fIL-~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~~---~~~-~~~a~~la~~s~G~~~~A~~l~~ 215 (394)
T PRK07940 148 TVWLL-CAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRRD---GVD-PETARRAARASQGHIGRARRLAT 215 (394)
T ss_pred CeEEE-EECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHhc---CCC-HHHHHHHHHHcCCCHHHHHHHhc
Confidence 34444 45558999999998 76 689999999988777775321 222 33466788889998876655443
No 170
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.33 E-value=4.1e-11 Score=136.83 Aligned_cols=179 Identities=15% Similarity=0.223 Sum_probs=125.0
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCe-----------
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 269 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~----------- 269 (764)
+..+-+|+++.|.++.++.|+.++... ..+..+||+||+||||||+++.+|+.+++.
T Consensus 9 KYRPqtFdEVIGQe~Vv~~L~~aL~~g------------RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C 76 (830)
T PRK07003 9 KWRPKDFASLVGQEHVVRALTHALDGG------------RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVC 76 (830)
T ss_pred HhCCCcHHHHcCcHHHHHHHHHHHhcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCccc
Confidence 456678999999999999998887641 123468999999999999999999988642
Q ss_pred -------------EEEEechhhhhhccchhHHHHHHHHHHHHh----cCCeEEEEccccccCCCCCCCchHHHHHHHHHH
Q 004267 270 -------------FFCINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 332 (764)
Q Consensus 270 -------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L 332 (764)
++.++..+ ...-..++.+++.+.. ....|+||||+|.|.. ...+.|
T Consensus 77 ~sCr~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~-----------~A~NAL 139 (830)
T PRK07003 77 RACREIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN-----------HAFNAM 139 (830)
T ss_pred HHHHHHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhCCH-----------HHHHHH
Confidence 22332211 1122345666665432 3457999999998842 234567
Q ss_pred HHHhhcccCCCeEEEEEecCCCCCCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCC-CchhhhHHhhhcCCCc
Q 004267 333 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYV 411 (764)
Q Consensus 333 l~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~~ 411 (764)
+..|+... .++.+|.+|++++.|.+.+++ |+ ..+.|..+..++-.+.|+..+....+. ++..+..+++...|-.
T Consensus 140 LKtLEEPP--~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~Gsm 214 (830)
T PRK07003 140 LKTLEEPP--PHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSM 214 (830)
T ss_pred HHHHHhcC--CCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 77776643 367788888889999988887 77 668888888888777777665443332 3445777888887764
Q ss_pred hH
Q 004267 412 GA 413 (764)
Q Consensus 412 ~~ 413 (764)
..
T Consensus 215 Rd 216 (830)
T PRK07003 215 RD 216 (830)
T ss_pred HH
Confidence 43
No 171
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.33 E-value=3.1e-11 Score=143.19 Aligned_cols=201 Identities=21% Similarity=0.280 Sum_probs=134.4
Q ss_pred ccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhh--------
Q 004267 208 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIM-------- 279 (764)
Q Consensus 208 ~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~-------- 279 (764)
.+..|+++.+++|.+++...... +-..+..++|+||||||||++++.+|+.++.+++.++.....
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~-------~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~ 394 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRV-------NKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGH 394 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhc-------ccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccc
Confidence 35899999999998887742211 113456799999999999999999999999998877644321
Q ss_pred -hhccchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcc-----c--------CCCeE
Q 004267 280 -SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGL-----K--------SRAHV 345 (764)
Q Consensus 280 -~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~-----~--------~~~~v 345 (764)
..|.|.....+...+..+....| +++|||+|.+.+..... ..+.|+..+|.- . .-+++
T Consensus 395 ~~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~g~-------~~~aLlevld~~~~~~~~d~~~~~~~dls~v 466 (784)
T PRK10787 395 RRTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMRGD-------PASALLEVLDPEQNVAFSDHYLEVDYDLSDV 466 (784)
T ss_pred hhccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccCCC-------HHHHHHHHhccccEEEEecccccccccCCce
Confidence 13455555555555655544455 89999999997653221 235677777631 1 12578
Q ss_pred EEEEecCCCCCCChhhhccCCcceEEEecCCChHHHHHHHHHHhcC-----CCCC------CchhhhHHhh-hcCCCchH
Q 004267 346 IVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKN-----MKLS------DDVDLERIAK-DTHGYVGA 413 (764)
Q Consensus 346 ~vI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~-----~~l~------~~~~l~~la~-~t~g~~~~ 413 (764)
++|+|+|.. .++++|+. |+ ..|.+..++.++..+|.+.++.. ..+. .+.-+..+++ .+..+-.+
T Consensus 467 ~~i~TaN~~-~i~~aLl~--R~-~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR 542 (784)
T PRK10787 467 MFVATSNSM-NIPAPLLD--RM-EVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVR 542 (784)
T ss_pred EEEEcCCCC-CCCHHHhc--ce-eeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccCCc
Confidence 999999887 59999997 88 46899999999999998877521 1111 1222444443 23445556
Q ss_pred HHHHHHHHHHHHHH
Q 004267 414 DLAALCTEAALQCI 427 (764)
Q Consensus 414 dl~~l~~~a~~~~~ 427 (764)
.+...+...+...+
T Consensus 543 ~LeR~I~~i~r~~l 556 (784)
T PRK10787 543 SLEREISKLCRKAV 556 (784)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666555444433
No 172
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.33 E-value=7.5e-12 Score=141.54 Aligned_cols=185 Identities=22% Similarity=0.303 Sum_probs=131.1
Q ss_pred ccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCC----------------
Q 004267 478 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA---------------- 541 (764)
Q Consensus 478 v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~---------------- 541 (764)
.+|+++.|++.+++.|...+.. + +.+.++||+||+|+|||++|+++|..+.+
T Consensus 13 ~~F~dIIGQe~iv~~L~~aI~~-----------~-rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr 80 (605)
T PRK05896 13 HNFKQIIGQELIKKILVNAILN-----------N-KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCE 80 (605)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHH
Confidence 4689999999999888765431 1 33456999999999999999999997632
Q ss_pred --------eeEEEecccchhcccCcchHHHHHHHHHHhhC----CCeEEEEecccchhhccCCCCCCCCcchHHHHHHHH
Q 004267 542 --------NFISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLL 609 (764)
Q Consensus 542 --------~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~----~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL 609 (764)
.++.++++. .-+-..+|.+.+.+... ...|++|||+|.+-. ...+.||
T Consensus 81 ~i~~~~h~DiieIdaas------~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~--------------~A~NaLL 140 (605)
T PRK05896 81 SINTNQSVDIVELDAAS------NNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLST--------------SAWNALL 140 (605)
T ss_pred HHHcCCCCceEEecccc------ccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCH--------------HHHHHHH
Confidence 233333321 11234577777666543 246999999998732 2457888
Q ss_pred HhhcCCCCCCcEEEEecCCCCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCCCCH
Q 004267 610 TEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS-KDVDLRALAKYTQGFSG 688 (764)
Q Consensus 610 ~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~~g~sg 688 (764)
..|+.. ...+++|++|+.++.|.+++++ |+. .+.|++|+.++....++..+.+.++. ++..+..++..+.| +.
T Consensus 141 KtLEEP--p~~tvfIL~Tt~~~KLl~TI~S--Rcq-~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~G-dl 214 (605)
T PRK05896 141 KTLEEP--PKHVVFIFATTEFQKIPLTIIS--RCQ-RYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADG-SL 214 (605)
T ss_pred HHHHhC--CCcEEEEEECCChHhhhHHHHh--hhh-hcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cH
Confidence 888864 3456777777788999999887 886 89999999999999998888665532 23346777777765 67
Q ss_pred HHHHHHHHHHHH
Q 004267 689 ADITEICQRACK 700 (764)
Q Consensus 689 ~di~~~~~~a~~ 700 (764)
+++.+++..+..
T Consensus 215 R~AlnlLekL~~ 226 (605)
T PRK05896 215 RDGLSILDQLST 226 (605)
T ss_pred HHHHHHHHHHHh
Confidence 777666666443
No 173
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.32 E-value=9.3e-12 Score=143.60 Aligned_cols=182 Identities=21% Similarity=0.316 Sum_probs=129.7
Q ss_pred ccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCC----------------
Q 004267 478 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA---------------- 541 (764)
Q Consensus 478 v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~---------------- 541 (764)
.+|++|.|++++++.|...+.. + +.+..+||+||+|+|||++|+++|+.+.+
T Consensus 13 ~~f~~iiGq~~v~~~L~~~i~~-----------~-~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~ 80 (576)
T PRK14965 13 QTFSDLTGQEHVSRTLQNAIDT-----------G-RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCV 80 (576)
T ss_pred CCHHHccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHH
Confidence 5689999999999988776542 1 33456899999999999999999998643
Q ss_pred --------eeEEEecccchhcccCcchHHHHHHHHHHhhC----CCeEEEEecccchhhccCCCCCCCCcchHHHHHHHH
Q 004267 542 --------NFISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLL 609 (764)
Q Consensus 542 --------~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~----~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL 609 (764)
+++.+++.. ..+...++++.+.+... ...|++|||+|.+. ....|.||
T Consensus 81 ~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt--------------~~a~naLL 140 (576)
T PRK14965 81 EITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLS--------------TNAFNALL 140 (576)
T ss_pred HHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCC--------------HHHHHHHH
Confidence 234444332 12345677777776533 24699999999863 23568889
Q ss_pred HhhcCCCCCCcEEEEecCCCCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCCCCH
Q 004267 610 TEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS-KDVDLRALAKYTQGFSG 688 (764)
Q Consensus 610 ~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~~g~sg 688 (764)
..|+.. ...+++|++||.++.|.+.+++ |+. .+.|..++.++....++..+++.++. ++..+..+++.+.| +-
T Consensus 141 k~LEep--p~~~~fIl~t~~~~kl~~tI~S--Rc~-~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G-~l 214 (576)
T PRK14965 141 KTLEEP--PPHVKFIFATTEPHKVPITILS--RCQ-RFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDG-SM 214 (576)
T ss_pred HHHHcC--CCCeEEEEEeCChhhhhHHHHH--hhh-hhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CH
Confidence 988863 4467777788888999999887 774 88999999988888888877766554 23346667776664 45
Q ss_pred HHHHHHHHH
Q 004267 689 ADITEICQR 697 (764)
Q Consensus 689 ~di~~~~~~ 697 (764)
+++.+++..
T Consensus 215 r~al~~Ldq 223 (576)
T PRK14965 215 RDSLSTLDQ 223 (576)
T ss_pred HHHHHHHHH
Confidence 555555443
No 174
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.31 E-value=2.9e-11 Score=136.41 Aligned_cols=185 Identities=16% Similarity=0.238 Sum_probs=125.3
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCe-----------
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 269 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~----------- 269 (764)
+..+-+|++|.|.+..++.|+.++... ..+..+||+||+|+||||+++.+|+.+++.
T Consensus 9 KYRPqtFddVIGQe~vv~~L~~al~~g------------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~ 76 (700)
T PRK12323 9 KWRPRDFTTLVGQEHVVRALTHALEQQ------------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQ 76 (700)
T ss_pred HhCCCcHHHHcCcHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCC
Confidence 456678999999999999998888642 123468999999999999999999998751
Q ss_pred ------------------EEEEechhhhhhccchhHHHHHHHHHHHH----hcCCeEEEEccccccCCCCCCCchHHHHH
Q 004267 270 ------------------FFCINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERR 327 (764)
Q Consensus 270 ------------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~ 327 (764)
++.+++.. ...-..++.+.+... .....|+||||+|.+.. .
T Consensus 77 PCG~C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~-----------~ 139 (700)
T PRK12323 77 PCGQCRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTN-----------H 139 (700)
T ss_pred CCcccHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCH-----------H
Confidence 22222211 112334555555543 34457999999998842 2
Q ss_pred HHHHHHHHhhcccCCCeEEEEEecCCCCCCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCC-CchhhhHHhhh
Q 004267 328 IVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKD 406 (764)
Q Consensus 328 v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-~~~~l~~la~~ 406 (764)
..+.|+..|+.-. .++++|.+|+.++.|.+.+++ |+ ..+.+..++.++-.+.|+..+....+. ++..+..+++.
T Consensus 140 AaNALLKTLEEPP--~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~ 214 (700)
T PRK12323 140 AFNAMLKTLEEPP--EHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQA 214 (700)
T ss_pred HHHHHHHhhccCC--CCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 3456777776533 467888888999999999987 66 567888888888777776554433332 23346677777
Q ss_pred cCCCchHHHHHHHH
Q 004267 407 THGYVGADLAALCT 420 (764)
Q Consensus 407 t~g~~~~dl~~l~~ 420 (764)
+.|-.. +...++.
T Consensus 215 A~Gs~R-dALsLLd 227 (700)
T PRK12323 215 AQGSMR-DALSLTD 227 (700)
T ss_pred cCCCHH-HHHHHHH
Confidence 776543 3334433
No 175
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.30 E-value=6.7e-11 Score=132.02 Aligned_cols=171 Identities=29% Similarity=0.462 Sum_probs=118.6
Q ss_pred cCCCCCcccccChHHHHHH---HHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechh
Q 004267 201 RLDEVGYDDVGGVRKQMAQ---IRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPE 277 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~---l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~ 277 (764)
.+.+-+++++.|.++.+.. ++.++.. ....+++|+|||||||||+|+++++.++..++.+++..
T Consensus 5 ~~RP~~l~d~vGq~~~v~~~~~L~~~i~~-------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~ 71 (413)
T PRK13342 5 RMRPKTLDEVVGQEHLLGPGKPLRRMIEA-------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVT 71 (413)
T ss_pred hhCCCCHHHhcCcHHHhCcchHHHHHHHc-------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccc
Confidence 3456678999999988766 7777653 12347999999999999999999999999999888653
Q ss_pred hhhhccchhHHHHHHHHHHHH----hcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecC-
Q 004267 278 IMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATN- 352 (764)
Q Consensus 278 l~~~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn- 352 (764)
. ....++.+++.+. .....+|||||+|.+... ..+.|+..++. ..+++|++|+
T Consensus 72 ~-------~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~-----------~q~~LL~~le~----~~iilI~att~ 129 (413)
T PRK13342 72 S-------GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKA-----------QQDALLPHVED----GTITLIGATTE 129 (413)
T ss_pred c-------cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHH-----------HHHHHHHHhhc----CcEEEEEeCCC
Confidence 2 2234555665553 235689999999987421 22445555542 4566666553
Q ss_pred C-CCCCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCC-----CCCCchhhhHHhhhcCCC
Q 004267 353 R-PNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNM-----KLSDDVDLERIAKDTHGY 410 (764)
Q Consensus 353 ~-~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~-----~l~~~~~l~~la~~t~g~ 410 (764)
. ...+++++++ |+ ..+.+..++.++...+++..+... .+ ++..+..+++.+.|-
T Consensus 130 n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i-~~~al~~l~~~s~Gd 189 (413)
T PRK13342 130 NPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVEL-DDEALDALARLANGD 189 (413)
T ss_pred ChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCC-CHHHHHHHHHhCCCC
Confidence 3 3478889988 77 678999999998888887655431 22 233466777776553
No 176
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.30 E-value=1.2e-11 Score=125.51 Aligned_cols=188 Identities=21% Similarity=0.249 Sum_probs=122.7
Q ss_pred CccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCC------eeEEEeccc
Q 004267 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA------NFISVKGPE 550 (764)
Q Consensus 477 ~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~------~~i~v~~~~ 550 (764)
.-+++++.|++.+.+.|+..+.. ....++|||||||||||+.|+++|.++.. .....+.++
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~-------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSd 98 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLR-------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASD 98 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhh-------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccc
Confidence 34678999999999988776542 22346999999999999999999998765 223334444
Q ss_pred chhcccCcchHHHHHHHHHHhh---------C-CCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCc
Q 004267 551 LLTMWFGESEANVREIFDKARQ---------S-APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKT 620 (764)
Q Consensus 551 l~~~~~g~se~~i~~~f~~a~~---------~-~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~ 620 (764)
-.+.-++. .+ .+-|.+... . ++.|++|||.|++.. ..-+.|...|+.. .+.
T Consensus 99 erGisvvr--~K-ik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmts--------------daq~aLrr~mE~~--s~~ 159 (346)
T KOG0989|consen 99 ERGISVVR--EK-IKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTS--------------DAQAALRRTMEDF--SRT 159 (346)
T ss_pred cccccchh--hh-hcCHHHHhhccccccCCCCCcceEEEEechhhhhH--------------HHHHHHHHHHhcc--ccc
Confidence 33222111 00 122322221 1 237999999999743 3456778888873 456
Q ss_pred EEEEecCCCCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCCCccc-HHHHHHHCCCCCHHHHHHHHHHHH
Q 004267 621 VFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVD-LRALAKYTQGFSGADITEICQRAC 699 (764)
Q Consensus 621 v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~-l~~la~~~~g~sg~di~~~~~~a~ 699 (764)
+.+|..||.++.|.+.+.+ |+. .+.|++...+.....|+....+.++.-|.+ +..+++..+| +=++....++.++
T Consensus 160 trFiLIcnylsrii~pi~S--RC~-KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~G-dLR~Ait~Lqsls 235 (346)
T KOG0989|consen 160 TRFILICNYLSRIIRPLVS--RCQ-KFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDG-DLRRAITTLQSLS 235 (346)
T ss_pred eEEEEEcCChhhCChHHHh--hHH-HhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-cHHHHHHHHHHhh
Confidence 7788889999999888887 887 667777777677777777776766653333 6667776654 3333333444444
Q ss_pred H
Q 004267 700 K 700 (764)
Q Consensus 700 ~ 700 (764)
.
T Consensus 236 ~ 236 (346)
T KOG0989|consen 236 L 236 (346)
T ss_pred c
Confidence 3
No 177
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.30 E-value=2.1e-11 Score=136.49 Aligned_cols=183 Identities=20% Similarity=0.291 Sum_probs=127.0
Q ss_pred ccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCC----------------
Q 004267 478 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA---------------- 541 (764)
Q Consensus 478 v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~---------------- 541 (764)
.+|++|.|++.+++.|...+.. + +.+..+|||||||+|||++|+++|+.+..
T Consensus 14 ~~~~diiGq~~~v~~L~~~i~~-----------~-~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C 81 (451)
T PRK06305 14 QTFSEILGQDAVVAVLKNALRF-----------N-RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASC 81 (451)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-----------C-CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHH
Confidence 5799999999999888766542 1 23456999999999999999999997532
Q ss_pred ---------eeEEEecccchhcccCcchHHHHHHHHHH----hhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHH
Q 004267 542 ---------NFISVKGPELLTMWFGESEANVREIFDKA----RQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 608 (764)
Q Consensus 542 ---------~~i~v~~~~l~~~~~g~se~~i~~~f~~a----~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~l 608 (764)
+++.+++... . +-..++.+-+.. ......|+||||+|.+.. ...+.|
T Consensus 82 ~~i~~~~~~d~~~i~g~~~----~--gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~--------------~~~n~L 141 (451)
T PRK06305 82 KEISSGTSLDVLEIDGASH----R--GIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTK--------------EAFNSL 141 (451)
T ss_pred HHHhcCCCCceEEeecccc----C--CHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCH--------------HHHHHH
Confidence 2444443221 1 123344433322 234568999999998732 346788
Q ss_pred HHhhcCCCCCCcEEEEecCCCCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCCCC
Q 004267 609 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS-KDVDLRALAKYTQGFS 687 (764)
Q Consensus 609 L~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~~g~s 687 (764)
|..|+.. ...+++|++||.++.|.+++.+ |+. .++|++++.++....++..+++.++. ++..+..++..+.| +
T Consensus 142 Lk~lEep--~~~~~~Il~t~~~~kl~~tI~s--Rc~-~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g-d 215 (451)
T PRK06305 142 LKTLEEP--PQHVKFFLATTEIHKIPGTILS--RCQ-KMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQG-S 215 (451)
T ss_pred HHHhhcC--CCCceEEEEeCChHhcchHHHH--hce-EEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 8888874 3366666777888889898887 885 79999999999998888887766543 33346777877754 5
Q ss_pred HHHHHHHHHHH
Q 004267 688 GADITEICQRA 698 (764)
Q Consensus 688 g~di~~~~~~a 698 (764)
.+++.+.+...
T Consensus 216 lr~a~~~Lekl 226 (451)
T PRK06305 216 LRDAESLYDYV 226 (451)
T ss_pred HHHHHHHHHHH
Confidence 55555555443
No 178
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.28 E-value=2e-11 Score=139.65 Aligned_cols=184 Identities=21% Similarity=0.303 Sum_probs=129.7
Q ss_pred CccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCC---------------
Q 004267 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 541 (764)
Q Consensus 477 ~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~--------------- 541 (764)
..+|++|.|++.+++.|+..+.. + +.+..+||+||+|+|||++|+++|+.+..
T Consensus 12 P~~f~diiGqe~iv~~L~~~i~~-----------~-~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C 79 (563)
T PRK06647 12 PRDFNSLEGQDFVVETLKHSIES-----------N-KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSC 79 (563)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHH
Confidence 35689999999999988776542 1 23456999999999999999999998643
Q ss_pred ---------eeEEEecccchhcccCcchHHHHHHHHHHh----hCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHH
Q 004267 542 ---------NFISVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 608 (764)
Q Consensus 542 ---------~~i~v~~~~l~~~~~g~se~~i~~~f~~a~----~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~l 608 (764)
+++.+++.. ..+-..++++.+.+. .....|+++||++.+. ....+.|
T Consensus 80 ~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls--------------~~a~naL 139 (563)
T PRK06647 80 KSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS--------------NSAFNAL 139 (563)
T ss_pred HHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC--------------HHHHHHH
Confidence 233333221 012345666654433 3455799999999863 3457888
Q ss_pred HHhhcCCCCCCcEEEEecCCCCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCCCC
Q 004267 609 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS-KDVDLRALAKYTQGFS 687 (764)
Q Consensus 609 L~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~~g~s 687 (764)
|..|+. +...+++|++|+.++.|.+++.+ |+. .+.|.+++.++..+.++..+++.++. ++..+..+|+...| +
T Consensus 140 LK~LEe--pp~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G-d 213 (563)
T PRK06647 140 LKTIEE--PPPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG-S 213 (563)
T ss_pred HHhhcc--CCCCEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 888885 33466666777778888888887 886 78999999999999998888666544 23346667777665 6
Q ss_pred HHHHHHHHHHH
Q 004267 688 GADITEICQRA 698 (764)
Q Consensus 688 g~di~~~~~~a 698 (764)
.+++.+++..+
T Consensus 214 lR~alslLdkl 224 (563)
T PRK06647 214 VRDAYTLFDQV 224 (563)
T ss_pred HHHHHHHHHHH
Confidence 67776666544
No 179
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.28 E-value=1.5e-10 Score=127.53 Aligned_cols=219 Identities=26% Similarity=0.307 Sum_probs=136.0
Q ss_pred cccChHHHHHHHHHHHHccccChhhhhhh--CC-CCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhhh-hccc
Q 004267 209 DVGGVRKQMAQIRELVELPLRHPQLFKSI--GV-KPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS-KLAG 284 (764)
Q Consensus 209 ~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l--~i-~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~-~~~g 284 (764)
.|.|++.+++.+..++..+++.-...... .+ .+..++||+||||||||++|+++|..++.+|+.+++..+.. .|.|
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG 151 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVG 151 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCccc
Confidence 38999999999877664322221100000 11 24568999999999999999999999999999999987653 5666
Q ss_pred hhH-HHHHHHHHH----HHhcCCeEEEEccccccCCCCCCCch---HHHHHHHHHHHHHhhccc-----------CCCeE
Q 004267 285 ESE-SNLRKAFEE----AEKNAPSIIFIDEIDSIAPKREKTHG---EVERRIVSQLLTLMDGLK-----------SRAHV 345 (764)
Q Consensus 285 ~~~-~~l~~vf~~----a~~~~p~il~iDEid~l~~~~~~~~~---~~~~~v~~~Ll~~ld~~~-----------~~~~v 345 (764)
... ..+..+++. .....++||||||||.+.++...++. .....+...|+.+|++-. .....
T Consensus 152 ~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~ 231 (412)
T PRK05342 152 EDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEF 231 (412)
T ss_pred chHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCe
Confidence 543 334444443 23456789999999999876432211 111246678888887531 11234
Q ss_pred EEEEecCCCC-------C---------------------------------------------CChhhhccCCcceEEEe
Q 004267 346 IVIGATNRPN-------S---------------------------------------------IDPALRRFGRFDREIDI 373 (764)
Q Consensus 346 ~vI~atn~~~-------~---------------------------------------------ld~al~r~~rf~~~i~i 373 (764)
++|.|+|-.. . +.|++. +|++..+.+
T Consensus 232 ~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEfl--gRld~iv~f 309 (412)
T PRK05342 232 IQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFI--GRLPVVATL 309 (412)
T ss_pred EEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHh--CCCCeeeec
Confidence 5555555410 0 112222 588888899
Q ss_pred cCCChHHHHHHHHH----Hhc---------CCCCC-CchhhhHHhhh--cCCCchHHHHHHHHHHHHHHHHh
Q 004267 374 GVPDEVGRLEVLRI----HTK---------NMKLS-DDVDLERIAKD--THGYVGADLAALCTEAALQCIRE 429 (764)
Q Consensus 374 ~~p~~~~R~~il~~----~~~---------~~~l~-~~~~l~~la~~--t~g~~~~dl~~l~~~a~~~~~~~ 429 (764)
...+.+...+|+.. ..+ ++.+. ++.-++.+++. ..+|-.+.+..++.......+.+
T Consensus 310 ~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~~ 381 (412)
T PRK05342 310 EELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMFE 381 (412)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHHh
Confidence 89999888888862 221 11111 23345667764 45666777777777666555443
No 180
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.28 E-value=4.5e-11 Score=137.34 Aligned_cols=191 Identities=22% Similarity=0.250 Sum_probs=133.0
Q ss_pred ccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEe-c--------
Q 004267 478 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVK-G-------- 548 (764)
Q Consensus 478 v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~-~-------- 548 (764)
.+|+++.|++.+++.|...+.. | +.+.++||+||+|+|||++|+++|+.+.+.....+ +
T Consensus 21 ~~f~dliGq~~~v~~L~~~~~~-----------g-ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~ 88 (598)
T PRK09111 21 QTFDDLIGQEAMVRTLTNAFET-----------G-RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGV 88 (598)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcc
Confidence 4689999999999988776542 1 34557999999999999999999998754321111 0
Q ss_pred ------------ccchhcc--cCcchHHHHHHHHHHhhCC----CeEEEEecccchhhccCCCCCCCCcchHHHHHHHHH
Q 004267 549 ------------PELLTMW--FGESEANVREIFDKARQSA----PCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLT 610 (764)
Q Consensus 549 ------------~~l~~~~--~g~se~~i~~~f~~a~~~~----p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~ 610 (764)
++++... -..+-..||++.+.++..+ ..|+||||+|.+. ....+.||.
T Consensus 89 c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls--------------~~a~naLLK 154 (598)
T PRK09111 89 GEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLS--------------TAAFNALLK 154 (598)
T ss_pred cHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCC--------------HHHHHHHHH
Confidence 1111000 0012346788887775433 5799999998873 234688888
Q ss_pred hhcCCCCCCcEEEEecCCCCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCCCc-ccHHHHHHHCCCCCHH
Q 004267 611 EMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKD-VDLRALAKYTQGFSGA 689 (764)
Q Consensus 611 ~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~-~~l~~la~~~~g~sg~ 689 (764)
.|+... ..+++|++|+.++.+-+.+++ |+ ..+.|..|+.++....++..+++.++.-+ ..+..+++.+.| +.+
T Consensus 155 tLEePp--~~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~G-dlr 228 (598)
T PRK09111 155 TLEEPP--PHVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEG-SVR 228 (598)
T ss_pred HHHhCC--CCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 888643 345566666777777777776 87 48999999999999999988877665433 346667777764 777
Q ss_pred HHHHHHHHHHH
Q 004267 690 DITEICQRACK 700 (764)
Q Consensus 690 di~~~~~~a~~ 700 (764)
++.+.+..+..
T Consensus 229 ~al~~Ldkli~ 239 (598)
T PRK09111 229 DGLSLLDQAIA 239 (598)
T ss_pred HHHHHHHHHHh
Confidence 88777766543
No 181
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.28 E-value=2.2e-10 Score=114.84 Aligned_cols=167 Identities=22% Similarity=0.353 Sum_probs=119.0
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCeEEEEechh
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPE 277 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~ 277 (764)
....+.++++.|++.+++.|.+-...-+. | .+..++||+|+.|||||++++++..+. |..++.|...+
T Consensus 20 ~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~--------G-~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~ 90 (249)
T PF05673_consen 20 HPDPIRLDDLIGIERQKEALIENTEQFLQ--------G-LPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKED 90 (249)
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHHc--------C-CCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHH
Confidence 35678899999999999998665543211 1 467899999999999999999999876 56678887665
Q ss_pred hhhhccchhHHHHHHHHHHHH-hcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhccc--CCCeEEEEEecCCC
Q 004267 278 IMSKLAGESESNLRKAFEEAE-KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK--SRAHVIVIGATNRP 354 (764)
Q Consensus 278 l~~~~~g~~~~~l~~vf~~a~-~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~--~~~~v~vI~atn~~ 354 (764)
+. .+..+++... ...+-|||+|++.+=.. + .-...|...|++-- ...+|++.+|+|+.
T Consensus 91 L~---------~l~~l~~~l~~~~~kFIlf~DDLsFe~~-------d---~~yk~LKs~LeGgle~~P~NvliyATSNRR 151 (249)
T PF05673_consen 91 LG---------DLPELLDLLRDRPYKFILFCDDLSFEEG-------D---TEYKALKSVLEGGLEARPDNVLIYATSNRR 151 (249)
T ss_pred hc---------cHHHHHHHHhcCCCCEEEEecCCCCCCC-------c---HHHHHHHHHhcCccccCCCcEEEEEecchh
Confidence 53 2344555444 33567999999764211 1 11256777777643 24588999999987
Q ss_pred CCCChhh---------------------hccCCcceEEEecCCChHHHHHHHHHHhcCCCCC
Q 004267 355 NSIDPAL---------------------RRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS 395 (764)
Q Consensus 355 ~~ld~al---------------------~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~ 395 (764)
+.+.+.+ .-..||.-.+.+..|+.++-++|++.++....+.
T Consensus 152 HLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~ 213 (249)
T PF05673_consen 152 HLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLE 213 (249)
T ss_pred hccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 5443321 1235899999999999999999999998765554
No 182
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=9.3e-11 Score=127.30 Aligned_cols=196 Identities=24% Similarity=0.399 Sum_probs=132.8
Q ss_pred CcceeeeCCCCCChhHHHHHHHHHhCCe-----eEEEecccchhcc---------------cCcch-HHHHHHHHHHhh-
Q 004267 515 SKGVLFYGPPGCGKTLLAKAIANECQAN-----FISVKGPELLTMW---------------FGESE-ANVREIFDKARQ- 572 (764)
Q Consensus 515 ~~gill~GppGtGKT~lak~lA~~~~~~-----~i~v~~~~l~~~~---------------~g~se-~~i~~~f~~a~~- 572 (764)
|.++++|||||||||.+++.++.+.... ++.|+|..+-+.| .|.+. +....+++....
T Consensus 42 p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~ 121 (366)
T COG1474 42 PSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKK 121 (366)
T ss_pred CccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhc
Confidence 4459999999999999999999986433 8899987654322 12221 223334443333
Q ss_pred CCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCC---CCCccCCCCCcc-ceEEe
Q 004267 573 SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPD---IIDPALLRPGRL-DQLIY 648 (764)
Q Consensus 573 ~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~---~ld~allrpgRf-~~~i~ 648 (764)
...-|+++||+|.|..+.+ .++..|+...+.. ..+|.+|+.+|..+ .+||.+.+ +| ...|.
T Consensus 122 ~~~~IvvLDEid~L~~~~~-----------~~LY~L~r~~~~~--~~~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~ 186 (366)
T COG1474 122 GKTVIVILDEVDALVDKDG-----------EVLYSLLRAPGEN--KVKVSIIAVSNDDKFLDYLDPRVKS--SLGPSEIV 186 (366)
T ss_pred CCeEEEEEcchhhhccccc-----------hHHHHHHhhcccc--ceeEEEEEEeccHHHHHHhhhhhhh--ccCcceee
Confidence 3456999999999986421 5677776665554 56789999999864 78888875 33 24589
Q ss_pred ecCCCHHHHHHHHHHHhccC---CCCCcccHHHHHHH---CCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCCCc
Q 004267 649 IPLPDEDSRHQIFKACLRKS---PVSKDVDLRALAKY---TQGFSGADITEICQRACKYAIRENIEKDIERERRRRDNPE 722 (764)
Q Consensus 649 ~~~p~~~~r~~Il~~~~~~~---~~~~~~~l~~la~~---~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~ 722 (764)
||+++.+|...|++...+.. +.-.+.-++.+|.. ..| +.+-...+|+.|+..|.++.
T Consensus 187 F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~G-DAR~aidilr~A~eiAe~~~---------------- 249 (366)
T COG1474 187 FPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESG-DARKAIDILRRAGEIAEREG---------------- 249 (366)
T ss_pred eCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHHhhC----------------
Confidence 99999999999999887543 22222223334433 333 55555678999998888765
Q ss_pred cccccccccccccccHHHHHHHHHhcCCCC
Q 004267 723 AMDEDAAEDEVSEIKAAHFEESMKFARRSI 752 (764)
Q Consensus 723 ~~~~~~~~~~~~~i~~~~f~~a~~~~~~s~ 752 (764)
...++.+|..+|-..+.+.+
T Consensus 250 ----------~~~v~~~~v~~a~~~~~~~~ 269 (366)
T COG1474 250 ----------SRKVSEDHVREAQEEIERDV 269 (366)
T ss_pred ----------CCCcCHHHHHHHHHHhhHHH
Confidence 34677778877766665554
No 183
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.27 E-value=4.4e-11 Score=123.01 Aligned_cols=158 Identities=16% Similarity=0.140 Sum_probs=99.4
Q ss_pred cceeeeCCCCCChhHHHHHHHHHhC---CeeEEEecccchhcccCcchHHHHHHHHHHhhCCCeEEEEecccchhhccCC
Q 004267 516 KGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGS 592 (764)
Q Consensus 516 ~gill~GppGtGKT~lak~lA~~~~---~~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~ 592 (764)
..++|+||+|||||+|+++++++.. .....+...+... ...++++.... ..+++|||++.+.+..
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~--------~~~~~~~~~~~--~dlliiDdi~~~~~~~-- 113 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAW--------FVPEVLEGMEQ--LSLVCIDNIECIAGDE-- 113 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhh--------hhHHHHHHhhh--CCEEEEeChhhhcCCH--
Confidence 4699999999999999999998754 2333444333211 11222222222 2589999999975421
Q ss_pred CCCCCCcchHHHHHHHHHhhcCCCCCCc-EEEEecCCCCCC---CCccCCCCCccc--eEEeecCCCHHHHHHHHHHHhc
Q 004267 593 SVGDAGGAADRVLNQLLTEMDGMSAKKT-VFIIGATNRPDI---IDPALLRPGRLD--QLIYIPLPDEDSRHQIFKACLR 666 (764)
Q Consensus 593 ~~~~~~~~~~~~~~~lL~~ld~~~~~~~-v~vi~aTn~~~~---ld~allrpgRf~--~~i~~~~p~~~~r~~Il~~~~~ 666 (764)
...+.+-.+++.+ ...++ -+++.+++.|.. +.|.+.+ |+. .++.+++|+.+++.+|++....
T Consensus 114 -------~~~~~lf~l~n~~---~e~g~~~li~ts~~~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~ 181 (235)
T PRK08084 114 -------LWEMAIFDLYNRI---LESGRTRLLITGDRPPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRAR 181 (235)
T ss_pred -------HHHHHHHHHHHHH---HHcCCCeEEEeCCCChHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHH
Confidence 1222232233222 12233 455666666665 5788887 886 7999999999999999998665
Q ss_pred cCCCCCc-ccHHHHHHHCCCCCHHHHHHHHHHH
Q 004267 667 KSPVSKD-VDLRALAKYTQGFSGADITEICQRA 698 (764)
Q Consensus 667 ~~~~~~~-~~l~~la~~~~g~sg~di~~~~~~a 698 (764)
..++.-+ .-++.|++..+| +.+.+.+++...
T Consensus 182 ~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~~l 213 (235)
T PRK08084 182 LRGFELPEDVGRFLLKRLDR-EMRTLFMTLDQL 213 (235)
T ss_pred HcCCCCCHHHHHHHHHhhcC-CHHHHHHHHHHH
Confidence 5444432 336677777764 777777777653
No 184
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.27 E-value=5.7e-11 Score=121.87 Aligned_cols=175 Identities=13% Similarity=0.166 Sum_probs=111.4
Q ss_pred CCcceeeeCCCCCChhHHHHHHHHHh---CCeeEEEecccchhcccCcchHHHHHHHHHHhhCCCeEEEEecccchhhcc
Q 004267 514 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQR 590 (764)
Q Consensus 514 ~~~gill~GppGtGKT~lak~lA~~~---~~~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r 590 (764)
...+++|+||+|||||+||++++.+. +.+++.+++.++... +.. .....++++||++.+..
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~------------~~~--~~~~~~liiDdi~~l~~-- 104 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLA------------FDF--DPEAELYAVDDVERLDD-- 104 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHH------------Hhh--cccCCEEEEeChhhcCc--
Confidence 34569999999999999999999975 567777877664321 111 22346999999998632
Q ss_pred CCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCC-CC--CCCccCCCCCcc--ceEEeecCCCHHHHHHHHHHHh
Q 004267 591 GSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNR-PD--IIDPALLRPGRL--DQLIYIPLPDEDSRHQIFKACL 665 (764)
Q Consensus 591 ~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~-~~--~ld~allrpgRf--~~~i~~~~p~~~~r~~Il~~~~ 665 (764)
..... |+..++.....+..+++.+++. |. .+.+.+.+ || ...+.+|+|+.+++..+++.+.
T Consensus 105 ---------~~~~~---L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~ 170 (227)
T PRK08903 105 ---------AQQIA---LFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAA 170 (227)
T ss_pred ---------hHHHH---HHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHH
Confidence 11222 3333333223334334444443 32 24455554 76 5799999999999999998877
Q ss_pred ccCCCCCcc-cHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCCCccccccccccccccccHHHHHHH
Q 004267 666 RKSPVSKDV-DLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEES 744 (764)
Q Consensus 666 ~~~~~~~~~-~l~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a 744 (764)
.+.++.-+. -++.|++... -+.+++.++++.-...|... ...||...+.++
T Consensus 171 ~~~~v~l~~~al~~L~~~~~-gn~~~l~~~l~~l~~~~~~~---------------------------~~~i~~~~~~~~ 222 (227)
T PRK08903 171 AERGLQLADEVPDYLLTHFR-RDMPSLMALLDALDRYSLEQ---------------------------KRPVTLPLLREM 222 (227)
T ss_pred HHcCCCCCHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHh---------------------------CCCCCHHHHHHH
Confidence 655444333 3666777544 47788888887644333222 236888888888
Q ss_pred HH
Q 004267 745 MK 746 (764)
Q Consensus 745 ~~ 746 (764)
+.
T Consensus 223 l~ 224 (227)
T PRK08903 223 LA 224 (227)
T ss_pred Hh
Confidence 75
No 185
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.27 E-value=6.4e-11 Score=135.51 Aligned_cols=199 Identities=25% Similarity=0.385 Sum_probs=127.7
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCeE
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFF 270 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l----------~~~~ 270 (764)
...+.+|+++.|.+..++.++..+.. ..+.+++|+||||||||++|+++.... +.+|
T Consensus 58 ~~rp~~f~~iiGqs~~i~~l~~al~~-------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~f 124 (531)
T TIGR02902 58 KTRPKSFDEIIGQEEGIKALKAALCG-------------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAF 124 (531)
T ss_pred hhCcCCHHHeeCcHHHHHHHHHHHhC-------------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCE
Confidence 45667899999999999988765432 235689999999999999999997642 3568
Q ss_pred EEEechhhh-------hhccchhHHHH---HHHHH----------HHHhcCCeEEEEccccccCCCCCCCchHHHHHHHH
Q 004267 271 FCINGPEIM-------SKLAGESESNL---RKAFE----------EAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVS 330 (764)
Q Consensus 271 i~v~~~~l~-------~~~~g~~~~~l---~~vf~----------~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~ 330 (764)
+.+++.... ....+.....+ ...|. ........+|||||++.+.+. ..+
T Consensus 125 i~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~-----------~q~ 193 (531)
T TIGR02902 125 VEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPV-----------QMN 193 (531)
T ss_pred EEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHH-----------HHH
Confidence 888875311 01111000000 00000 111223479999999988532 223
Q ss_pred HHHHHhhccc--------------------------CCCe-EEEEEecCCCCCCChhhhccCCcceEEEecCCChHHHHH
Q 004267 331 QLLTLMDGLK--------------------------SRAH-VIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLE 383 (764)
Q Consensus 331 ~Ll~~ld~~~--------------------------~~~~-v~vI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~ 383 (764)
.|+..|+.-. .... .++.+||+.|+.+++++++ |+ .++.++.++.++..+
T Consensus 194 ~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~-~~I~f~pL~~eei~~ 270 (531)
T TIGR02902 194 KLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RC-VEIFFRPLLDEEIKE 270 (531)
T ss_pred HHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hh-heeeCCCCCHHHHHH
Confidence 4444443210 0112 3445667789999999998 77 467888889999999
Q ss_pred HHHHHhcCCCCC-CchhhhHHhhhcCCCchHHHHHHHHHHHHHHHH
Q 004267 384 VLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTEAALQCIR 428 (764)
Q Consensus 384 il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~ 428 (764)
|++..+++..+. ++..++.++..+. .++++.++++.|+..+..
T Consensus 271 Il~~~a~k~~i~is~~al~~I~~y~~--n~Rel~nll~~Aa~~A~~ 314 (531)
T TIGR02902 271 IAKNAAEKIGINLEKHALELIVKYAS--NGREAVNIVQLAAGIALG 314 (531)
T ss_pred HHHHHHHHcCCCcCHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhh
Confidence 999887765433 3334566665443 678999999888765543
No 186
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.27 E-value=2.8e-11 Score=130.30 Aligned_cols=176 Identities=29% Similarity=0.443 Sum_probs=123.5
Q ss_pred cccChHHHHHHHHHHHHccccChhhhhhhC-CCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhhh-hccc-h
Q 004267 209 DVGGVRKQMAQIRELVELPLRHPQLFKSIG-VKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS-KLAG-E 285 (764)
Q Consensus 209 ~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~-i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~-~~~g-~ 285 (764)
.|.|.++.++.+..++....+...+...+. -.++++|||+||||||||+++++||+.++.+|+.+++..+.. .|.| +
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 489999999999777765433322221111 234689999999999999999999999999999999877653 5666 4
Q ss_pred hHHHHHHHHHHH--------------------------------------------------------------------
Q 004267 286 SESNLRKAFEEA-------------------------------------------------------------------- 297 (764)
Q Consensus 286 ~~~~l~~vf~~a-------------------------------------------------------------------- 297 (764)
.+..++.+|+.|
T Consensus 93 vE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 172 (441)
T TIGR00390 93 VESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEI 172 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEE
Confidence 555555555544
Q ss_pred ---------------------------------------------------------------------H--hcCCeEEE
Q 004267 298 ---------------------------------------------------------------------E--KNAPSIIF 306 (764)
Q Consensus 298 ---------------------------------------------------------------------~--~~~p~il~ 306 (764)
. ..+-.|+|
T Consensus 173 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVf 252 (441)
T TIGR00390 173 DVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIF 252 (441)
T ss_pred eecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 0 12346999
Q ss_pred EccccccCCCCCCCchHH-HHHHHHHHHHHhhccc--------CCCeEEEEEec----CCCCCCChhhhccCCcceEEEe
Q 004267 307 IDEIDSIAPKREKTHGEV-ERRIVSQLLTLMDGLK--------SRAHVIVIGAT----NRPNSIDPALRRFGRFDREIDI 373 (764)
Q Consensus 307 iDEid~l~~~~~~~~~~~-~~~v~~~Ll~~ld~~~--------~~~~v~vI~at----n~~~~ld~al~r~~rf~~~i~i 373 (764)
|||||.++.+......++ ..-|...|+.++++-. ...++++|++- ..|.++-|.|. |||...+.+
T Consensus 253 iDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v~L 330 (441)
T TIGR00390 253 IDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQ--GRFPIRVEL 330 (441)
T ss_pred EEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHh--CccceEEEC
Confidence 999999997653222222 2335567888887632 22467777532 34666667776 599999999
Q ss_pred cCCChHHHHHHHH
Q 004267 374 GVPDEVGRLEVLR 386 (764)
Q Consensus 374 ~~p~~~~R~~il~ 386 (764)
..++.++-.+||.
T Consensus 331 ~~L~~edL~rILt 343 (441)
T TIGR00390 331 QALTTDDFERILT 343 (441)
T ss_pred CCCCHHHHHHHhc
Confidence 9999999888884
No 187
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.27 E-value=2.8e-10 Score=125.48 Aligned_cols=201 Identities=23% Similarity=0.315 Sum_probs=124.6
Q ss_pred ccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhC---------CeEEEEechhh
Q 004267 208 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG---------AFFFCINGPEI 278 (764)
Q Consensus 208 ~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~---------~~~i~v~~~~l 278 (764)
+++.|-++++++|..++.-.+.. ..+.+++|+||||||||++++.++..+. ..++.+++...
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~---------~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~ 85 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRG---------SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQIL 85 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcC---------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCC
Confidence 46899999999998887642211 3356799999999999999999988653 45778887543
Q ss_pred hh----------hcc--c--------hhHHHHHHHHHHHHh-cCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhh
Q 004267 279 MS----------KLA--G--------ESESNLRKAFEEAEK-NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMD 337 (764)
Q Consensus 279 ~~----------~~~--g--------~~~~~l~~vf~~a~~-~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld 337 (764)
.+ ... + .....+..+++.... ..+.+|+|||+|.+.... ..+..+|+.+.+
T Consensus 86 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~--------~~~L~~l~~~~~ 157 (365)
T TIGR02928 86 DTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD--------DDLLYQLSRARS 157 (365)
T ss_pred CCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC--------cHHHHhHhcccc
Confidence 21 110 1 012233444554432 456789999999997321 113344444421
Q ss_pred cc-cCCCeEEEEEecCCCC---CCChhhhccCCcc-eEEEecCCChHHHHHHHHHHhcC-C--CCCCchhhhH---Hhhh
Q 004267 338 GL-KSRAHVIVIGATNRPN---SIDPALRRFGRFD-REIDIGVPDEVGRLEVLRIHTKN-M--KLSDDVDLER---IAKD 406 (764)
Q Consensus 338 ~~-~~~~~v~vI~atn~~~---~ld~al~r~~rf~-~~i~i~~p~~~~R~~il~~~~~~-~--~l~~~~~l~~---la~~ 406 (764)
.. ....++.+|+++|.++ .+++.+.+ ||. ..+.+++++.++..+|++..+.. . ...++..++. ++..
T Consensus 158 ~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~ 235 (365)
T TIGR02928 158 NGDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQ 235 (365)
T ss_pred ccCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHH
Confidence 11 1235788899998875 46777765 554 67899999999999999877642 1 1112222333 3344
Q ss_pred cCCCchHHHHHHHHHHHHHHHH
Q 004267 407 THGYVGADLAALCTEAALQCIR 428 (764)
Q Consensus 407 t~g~~~~dl~~l~~~a~~~~~~ 428 (764)
+.|.... ...+|..|+..+..
T Consensus 236 ~~Gd~R~-al~~l~~a~~~a~~ 256 (365)
T TIGR02928 236 EHGDARK-AIDLLRVAGEIAER 256 (365)
T ss_pred hcCCHHH-HHHHHHHHHHHHHH
Confidence 4565433 34466666655543
No 188
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.27 E-value=2.8e-11 Score=135.56 Aligned_cols=173 Identities=16% Similarity=0.276 Sum_probs=114.5
Q ss_pred cceeeeCCCCCChhHHHHHHHHHh-----CCeeEEEecccchhcccCcchH---HHHHHHHHHhhCCCeEEEEecccchh
Q 004267 516 KGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLTMWFGESEA---NVREIFDKARQSAPCVLFFDELDSIA 587 (764)
Q Consensus 516 ~gill~GppGtGKT~lak~lA~~~-----~~~~i~v~~~~l~~~~~g~se~---~i~~~f~~a~~~~p~iifiDEid~l~ 587 (764)
.+++|||++|+|||+|++++++++ +..++.+++.++...+...... .+....+..+ .+.+|++||++.+.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~~--~~dvLiIDDiq~l~ 219 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEIC--QNDVLIIDDVQFLS 219 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHhc--cCCEEEEecccccc
Confidence 459999999999999999999954 4677888988887665433221 2222222222 34699999999885
Q ss_pred hccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCCC---CCccCCCCCccc--eEEeecCCCHHHHHHHHH
Q 004267 588 TQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDI---IDPALLRPGRLD--QLIYIPLPDEDSRHQIFK 662 (764)
Q Consensus 588 ~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~---ld~allrpgRf~--~~i~~~~p~~~~r~~Il~ 662 (764)
++. ... ..|...++.....++.+|+.+...|+. +++.+.+ ||. ..+.+.+|+.++|.+|++
T Consensus 220 ~k~---------~~~---e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~ 285 (450)
T PRK14087 220 YKE---------KTN---EIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIK 285 (450)
T ss_pred CCH---------HHH---HHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHH
Confidence 421 122 233333333223334444444444543 4677776 875 777788999999999999
Q ss_pred HHhccCCC---CCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q 004267 663 ACLRKSPV---SKDVDLRALAKYTQGFSGADITEICQRACKYAIRE 705 (764)
Q Consensus 663 ~~~~~~~~---~~~~~l~~la~~~~g~sg~di~~~~~~a~~~a~~~ 705 (764)
..++..++ -++.-+..||....| +.+.+.++|..+...+...
T Consensus 286 ~~~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~a~~~ 330 (450)
T PRK14087 286 KEIKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFWSQQN 330 (450)
T ss_pred HHHHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhcc
Confidence 99976543 223346677777764 8899999998887666553
No 189
>PRK08727 hypothetical protein; Validated
Probab=99.27 E-value=7.4e-11 Score=121.14 Aligned_cols=157 Identities=21% Similarity=0.279 Sum_probs=98.7
Q ss_pred cceeeeCCCCCChhHHHHHHHHHh---CCeeEEEecccchhcccCcchHHHHHHHHHHhhCCCeEEEEecccchhhccCC
Q 004267 516 KGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGS 592 (764)
Q Consensus 516 ~gill~GppGtGKT~lak~lA~~~---~~~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~ 592 (764)
..++|+||+|||||+|+++++.++ +...+.+...++. ..+..+++..... .++++||++.+....
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~--------~~~~~~~~~l~~~--dlLiIDDi~~l~~~~-- 109 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA--------GRLRDALEALEGR--SLVALDGLESIAGQR-- 109 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh--------hhHHHHHHHHhcC--CEEEEeCcccccCCh--
Confidence 349999999999999999998764 4444555544322 2344555554433 599999999876432
Q ss_pred CCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCCCC---CccCCCCCcc--ceEEeecCCCHHHHHHHHHHHhcc
Q 004267 593 SVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDII---DPALLRPGRL--DQLIYIPLPDEDSRHQIFKACLRK 667 (764)
Q Consensus 593 ~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~l---d~allrpgRf--~~~i~~~~p~~~~r~~Il~~~~~~ 667 (764)
.....+-.+++.+. ..+.-+|+.+.+.|..+ +|++.+ || ..++.+++|+.+++.+|++.+...
T Consensus 110 -------~~~~~lf~l~n~~~---~~~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~ 177 (233)
T PRK08727 110 -------EDEVALFDFHNRAR---AAGITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQR 177 (233)
T ss_pred -------HHHHHHHHHHHHHH---HcCCeEEEECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHH
Confidence 11222223433332 22223444455566655 688887 86 578899999999999999987654
Q ss_pred CCCC-CcccHHHHHHHCCCCCHHHHHHHHHH
Q 004267 668 SPVS-KDVDLRALAKYTQGFSGADITEICQR 697 (764)
Q Consensus 668 ~~~~-~~~~l~~la~~~~g~sg~di~~~~~~ 697 (764)
.++. ++.-+..|++.+.| +.+.+.+++..
T Consensus 178 ~~l~l~~e~~~~La~~~~r-d~r~~l~~L~~ 207 (233)
T PRK08727 178 RGLALDEAAIDWLLTHGER-ELAGLVALLDR 207 (233)
T ss_pred cCCCCCHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 4443 23346778877663 44444444543
No 190
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=1.1e-10 Score=118.68 Aligned_cols=132 Identities=25% Similarity=0.400 Sum_probs=92.8
Q ss_pred cccccchhhhhcccceeeccCCChhhhhhc----cCCC-CcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccch-hc
Q 004267 481 EDIGGLENVKRELQETVQYPVEHPEKFEKF----GMSP-SKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-TM 554 (764)
Q Consensus 481 ~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~----~~~~-~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~-~~ 554 (764)
+.++|++..|+.|.-.+-. |...+... .+.. ..++||.||+|||||.||+.+|+.++.||-.-++..|. ..
T Consensus 61 ~YVIGQe~AKKvLsVAVYN---HYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAG 137 (408)
T COG1219 61 EYVIGQEQAKKVLSVAVYN---HYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAG 137 (408)
T ss_pred hheecchhhhceeeeeehh---HHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhcc
Confidence 4588999999988765532 21222111 1222 23599999999999999999999999999988887765 57
Q ss_pred ccCcchHH-HHHHHHHHh----hCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCC
Q 004267 555 WFGESEAN-VREIFDKAR----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGM 615 (764)
Q Consensus 555 ~~g~se~~-i~~~f~~a~----~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~ 615 (764)
|+|+.-.+ +-++.+.|. .....||++||||.++.+....+-..+-.++-+-+.||..++|-
T Consensus 138 YVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 138 YVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred ccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCc
Confidence 99988655 445555542 12235999999999998754433333334567888999999984
No 191
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.26 E-value=1.1e-10 Score=120.22 Aligned_cols=190 Identities=26% Similarity=0.414 Sum_probs=122.9
Q ss_pred CCCCCcccccChHHHHHH---HHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCe---EEEEec
Q 004267 202 LDEVGYDDVGGVRKQMAQ---IRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---FFCING 275 (764)
Q Consensus 202 ~~~~~~~~i~Gl~~~~~~---l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~---~i~v~~ 275 (764)
..+-+++|.+|.++.+.+ |+.+++. ..-..++|+||||||||||||.|+.....+ |+.++.
T Consensus 132 mRPktL~dyvGQ~hlv~q~gllrs~ieq-------------~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSA 198 (554)
T KOG2028|consen 132 MRPKTLDDYVGQSHLVGQDGLLRSLIEQ-------------NRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSA 198 (554)
T ss_pred cCcchHHHhcchhhhcCcchHHHHHHHc-------------CCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEec
Confidence 455578888888877543 4444443 233469999999999999999999987655 666654
Q ss_pred hhhhhhccchhHHHHHHHHHHHHh-----cCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEe
Q 004267 276 PEIMSKLAGESESNLRKAFEEAEK-----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGA 350 (764)
Q Consensus 276 ~~l~~~~~g~~~~~l~~vf~~a~~-----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~a 350 (764)
.. ..-+.+|.+|+++.+ ....|||||||+.+....+ ..++ ..-.++.|++||+
T Consensus 199 t~-------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQ-----------D~fL----P~VE~G~I~lIGA 256 (554)
T KOG2028|consen 199 TN-------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQ-----------DTFL----PHVENGDITLIGA 256 (554)
T ss_pred cc-------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhh-----------hccc----ceeccCceEEEec
Confidence 32 234578899998875 3568999999998754322 1122 2224578889986
Q ss_pred cC-CC-CCCChhhhccCCcceEEEecCCChHHHHHHHHHHhc----------CCCC----CCchhhhHHhhhcCCCchHH
Q 004267 351 TN-RP-NSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTK----------NMKL----SDDVDLERIAKDTHGYVGAD 414 (764)
Q Consensus 351 tn-~~-~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~----------~~~l----~~~~~l~~la~~t~g~~~~d 414 (764)
|. .| -.++.+|.+ |. +.+.+......+-..||..-.. .++. .++.-++.++..+.|-....
T Consensus 257 TTENPSFqln~aLlS--RC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~a 333 (554)
T KOG2028|consen 257 TTENPSFQLNAALLS--RC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAA 333 (554)
T ss_pred ccCCCccchhHHHHh--cc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHH
Confidence 64 34 356778877 44 4456666666666666653211 2222 13445788889998877777
Q ss_pred HHHHHHHHHHHHHHh
Q 004267 415 LAALCTEAALQCIRE 429 (764)
Q Consensus 415 l~~l~~~a~~~~~~~ 429 (764)
+..|--.+.+.+.+.
T Consensus 334 LN~Lems~~m~~tr~ 348 (554)
T KOG2028|consen 334 LNALEMSLSMFCTRS 348 (554)
T ss_pred HHHHHHHHHHHHhhc
Confidence 666654444444443
No 192
>PLN03025 replication factor C subunit; Provisional
Probab=99.26 E-value=1.4e-10 Score=125.05 Aligned_cols=174 Identities=20% Similarity=0.213 Sum_probs=115.9
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhC-----CeEEEEec
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG-----AFFFCING 275 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~-----~~~i~v~~ 275 (764)
+..+-+++++.|.++.++.|+.++... ...+++|+|||||||||+|+++|+++. ..++.++.
T Consensus 6 kyrP~~l~~~~g~~~~~~~L~~~~~~~-------------~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~ 72 (319)
T PLN03025 6 KYRPTKLDDIVGNEDAVSRLQVIARDG-------------NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNA 72 (319)
T ss_pred hcCCCCHHHhcCcHHHHHHHHHHHhcC-------------CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecc
Confidence 456778999999999999988876531 123699999999999999999999973 23556665
Q ss_pred hhhhhhccchhHHHHHHHHHHHH-------hcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEE
Q 004267 276 PEIMSKLAGESESNLRKAFEEAE-------KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVI 348 (764)
Q Consensus 276 ~~l~~~~~g~~~~~l~~vf~~a~-------~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI 348 (764)
++..+ ...++..+.... .....+++|||+|.+... ....|+..++.... ...+|
T Consensus 73 sd~~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~-----------aq~aL~~~lE~~~~--~t~~i 133 (319)
T PLN03025 73 SDDRG------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSG-----------AQQALRRTMEIYSN--TTRFA 133 (319)
T ss_pred ccccc------HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHH-----------HHHHHHHHHhcccC--CceEE
Confidence 54321 112333322211 123579999999987532 12446666665433 23455
Q ss_pred EecCCCCCCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCC-CchhhhHHhhhcCC
Q 004267 349 GATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHG 409 (764)
Q Consensus 349 ~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g 409 (764)
.+||.+..+.+++++ |+ ..+.+..|+.++....++..++...+. ++..+..++....|
T Consensus 134 l~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g 192 (319)
T PLN03025 134 LACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG 192 (319)
T ss_pred EEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 577778888888887 55 468899999998888887665543322 33457777776654
No 193
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.26 E-value=1.7e-10 Score=126.53 Aligned_cols=186 Identities=20% Similarity=0.268 Sum_probs=123.6
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCe-----------
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 269 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~----------- 269 (764)
+..+.+|+++.|.+..++.++.++... ..+..+||+||+|+||||+|+++|+.+...
T Consensus 9 kyrP~~~~~iiGq~~~~~~l~~~~~~~------------~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c 76 (363)
T PRK14961 9 KWRPQYFRDIIGQKHIVTAISNGLSLG------------RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKC 76 (363)
T ss_pred HhCCCchhhccChHHHHHHHHHHHHcC------------CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 456678999999999999998887641 124468999999999999999999988632
Q ss_pred -------------EEEEechhhhhhccchhHHHHHHHHHHHHh----cCCeEEEEccccccCCCCCCCchHHHHHHHHHH
Q 004267 270 -------------FFCINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 332 (764)
Q Consensus 270 -------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L 332 (764)
++.+++.. ...-..++.+.+.+.. ....+++|||+|.+.. ...+.|
T Consensus 77 ~~c~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~-----------~a~naL 139 (363)
T PRK14961 77 IICKEIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSR-----------HSFNAL 139 (363)
T ss_pred HHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCH-----------HHHHHH
Confidence 12222110 0122345666655432 2346999999997732 223457
Q ss_pred HHHhhcccCCCeEEEEEecCCCCCCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCC-CCchhhhHHhhhcCCCc
Q 004267 333 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDDVDLERIAKDTHGYV 411 (764)
Q Consensus 333 l~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l-~~~~~l~~la~~t~g~~ 411 (764)
+..++... ..+.+|.+|+.++.+.+.+++ |+ ..++++.|+.++..++++..++.... .++..+..++..+.|-
T Consensus 140 Lk~lEe~~--~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G~- 213 (363)
T PRK14961 140 LKTLEEPP--QHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGS- 213 (363)
T ss_pred HHHHhcCC--CCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-
Confidence 77776543 355566667778888888876 66 56899999999988888876654432 2334567777777663
Q ss_pred hHHHHHHHHH
Q 004267 412 GADLAALCTE 421 (764)
Q Consensus 412 ~~dl~~l~~~ 421 (764)
.+++..++..
T Consensus 214 ~R~al~~l~~ 223 (363)
T PRK14961 214 MRDALNLLEH 223 (363)
T ss_pred HHHHHHHHHH
Confidence 3344444443
No 194
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.25 E-value=2e-11 Score=128.51 Aligned_cols=176 Identities=18% Similarity=0.181 Sum_probs=114.5
Q ss_pred cCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccchhc--ccCcchHH----------HHHHHHHHhhCCCeEE
Q 004267 511 GMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM--WFGESEAN----------VREIFDKARQSAPCVL 578 (764)
Q Consensus 511 ~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~~~--~~g~se~~----------i~~~f~~a~~~~p~ii 578 (764)
++...++++|.||||||||++++.+|..++.+++.|++..-++. ++|...-. ....+-.|.. .++++
T Consensus 60 ~l~~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~il 138 (327)
T TIGR01650 60 GFAYDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVAL 138 (327)
T ss_pred HHhcCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEE
Confidence 34456779999999999999999999999999999987655543 44542111 1123334433 35789
Q ss_pred EEecccchhhccCCCCCCCCcchHHHHHHHHHh-----hcC----CCCCCcEEEEecCCCCC------------CCCccC
Q 004267 579 FFDELDSIATQRGSSVGDAGGAADRVLNQLLTE-----MDG----MSAKKTVFIIGATNRPD------------IIDPAL 637 (764)
Q Consensus 579 fiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~-----ld~----~~~~~~v~vi~aTn~~~------------~ld~al 637 (764)
++|||+..-+ .....++.+|.. +.+ +.....+.||||+|..+ .+++|+
T Consensus 139 llDEin~a~p-----------~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~ 207 (327)
T TIGR01650 139 CFDEYDAGRP-----------DVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQ 207 (327)
T ss_pred EechhhccCH-----------HHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHH
Confidence 9999998532 233444555542 111 11234688999999865 467888
Q ss_pred CCCCccceEEeecCCCHHHHHHHHHHHhccCCCCCccc----HHHHHHH----------CCCCCHHHHHHHHHHHHH
Q 004267 638 LRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVD----LRALAKY----------TQGFSGADITEICQRACK 700 (764)
Q Consensus 638 lrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~----l~~la~~----------~~g~sg~di~~~~~~a~~ 700 (764)
+. ||-.++.++.|+.++-.+|+.....+..-..+.. +-.+|.. ..+.|.+.+..+.+.+.+
T Consensus 208 lD--RF~i~~~~~Yp~~e~E~~Il~~~~~~~~~~~~~~i~~~mV~la~~tR~~~~~~~i~~~~SpR~li~w~~~~~~ 282 (327)
T TIGR01650 208 MD--RWSIVTTLNYLEHDNEAAIVLAKAKGFDDTEGKDIINAMVRVADMTRNAFINGDISTVMSPRTVITWAENAEI 282 (327)
T ss_pred Hh--heeeEeeCCCCCHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhccCCccccccHHHHHHHHHHHHh
Confidence 88 9998899999999999999987654322101111 1223322 235688888777766543
No 195
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.25 E-value=8.3e-11 Score=132.46 Aligned_cols=187 Identities=23% Similarity=0.308 Sum_probs=132.6
Q ss_pred ccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCC----------------
Q 004267 478 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA---------------- 541 (764)
Q Consensus 478 v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~---------------- 541 (764)
.+|+++.|++.+++.|...+.. | +.+..+|||||+|+|||++|+++|+.+..
T Consensus 11 ~~fdeiiGqe~v~~~L~~~I~~-----------g-rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~ 78 (535)
T PRK08451 11 KHFDELIGQESVSKTLSLALDN-----------N-RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQ 78 (535)
T ss_pred CCHHHccCcHHHHHHHHHHHHc-----------C-CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHH
Confidence 5689999999999888766532 1 23445799999999999999999997631
Q ss_pred --------eeEEEecccchhcccCcchHHHHHHHHHHhh----CCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHH
Q 004267 542 --------NFISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLL 609 (764)
Q Consensus 542 --------~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~----~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL 609 (764)
.++.+++++- .+-..|+.+.+.... ....|++|||+|.+. ....+.||
T Consensus 79 ~~~~~~h~dv~eldaas~------~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt--------------~~A~NALL 138 (535)
T PRK08451 79 SALENRHIDIIEMDAASN------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLT--------------KEAFNALL 138 (535)
T ss_pred HHhhcCCCeEEEeccccc------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC--------------HHHHHHHH
Confidence 1233322210 113456766655432 234699999998863 34578889
Q ss_pred HhhcCCCCCCcEEEEecCCCCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCCCCH
Q 004267 610 TEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS-KDVDLRALAKYTQGFSG 688 (764)
Q Consensus 610 ~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~~g~sg 688 (764)
..|+..+ ..+.+|.+|+.+..|.+++++ |+ ..++|.+++.++..+.++..+++.++. ++..+..+++...| +.
T Consensus 139 K~LEEpp--~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G-dl 212 (535)
T PRK08451 139 KTLEEPP--SYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNG-SL 212 (535)
T ss_pred HHHhhcC--CceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cH
Confidence 9998753 345555566777899999987 86 489999999999888888888766554 23456777777765 88
Q ss_pred HHHHHHHHHHHHHH
Q 004267 689 ADITEICQRACKYA 702 (764)
Q Consensus 689 ~di~~~~~~a~~~a 702 (764)
+++.+++..|...+
T Consensus 213 R~alnlLdqai~~~ 226 (535)
T PRK08451 213 RDTLTLLDQAIIYC 226 (535)
T ss_pred HHHHHHHHHHHHhc
Confidence 88888888777654
No 196
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.25 E-value=2.9e-10 Score=116.50 Aligned_cols=186 Identities=18% Similarity=0.285 Sum_probs=114.9
Q ss_pred Ccccc--cChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCeEEEEechhhhh
Q 004267 206 GYDDV--GGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMS 280 (764)
Q Consensus 206 ~~~~i--~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~ 280 (764)
+|++. ++.+..++.+++++.. ..+.+++|+||+|||||+++++++... +..++.+++.++..
T Consensus 13 ~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~ 79 (226)
T TIGR03420 13 TFDNFYAGGNAELLAALRQLAAG-------------KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQ 79 (226)
T ss_pred hhcCcCcCCcHHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHH
Confidence 44443 4566777777776531 346789999999999999999999876 45678888877653
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCC--
Q 004267 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSID-- 358 (764)
Q Consensus 281 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld-- 358 (764)
.. ..+++.. ....+|+|||++.+..... ....|..+++........+|++++..+..++
T Consensus 80 ~~--------~~~~~~~--~~~~lLvIDdi~~l~~~~~---------~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~ 140 (226)
T TIGR03420 80 AD--------PEVLEGL--EQADLVCLDDVEAIAGQPE---------WQEALFHLYNRVREAGGRLLIAGRAAPAQLPLR 140 (226)
T ss_pred hH--------HHHHhhc--ccCCEEEEeChhhhcCChH---------HHHHHHHHHHHHHHcCCeEEEECCCChHHCCcc
Confidence 22 2233322 2246999999998753210 1234555555443333445554444444332
Q ss_pred -hhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCC-CchhhhHHhhhcCCCchHHHHHHHHHHHH
Q 004267 359 -PALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTEAAL 424 (764)
Q Consensus 359 -~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~a~~ 424 (764)
+.+.+...+...+.++.|+.+++..+++.......+. ++.-+..++.. -+-...++..++.++..
T Consensus 141 ~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~-~~gn~r~L~~~l~~~~~ 207 (226)
T TIGR03420 141 LPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRH-GSRDMGSLMALLDALDR 207 (226)
T ss_pred cHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh-ccCCHHHHHHHHHHHHH
Confidence 6666522235789999999999999998765433322 23346677774 34455666666665543
No 197
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.25 E-value=7.8e-11 Score=127.34 Aligned_cols=184 Identities=22% Similarity=0.276 Sum_probs=119.8
Q ss_pred ccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhC-----CeeEEEecccch
Q 004267 478 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ-----ANFISVKGPELL 552 (764)
Q Consensus 478 v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~-----~~~i~v~~~~l~ 552 (764)
.+|+++.|.+.+++.+...+.. + ...+++|+||||||||++++++++++. .+++.++.++-.
T Consensus 14 ~~~~~~~g~~~~~~~l~~~i~~-----------~--~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~ 80 (319)
T PRK00440 14 RTLDEIVGQEEIVERLKSYVKE-----------K--NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDER 80 (319)
T ss_pred CcHHHhcCcHHHHHHHHHHHhC-----------C--CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecccccc
Confidence 4688899999888888765432 1 112489999999999999999999862 345555544321
Q ss_pred hcccCcchHHHHHHH-HHHhh-----CCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEec
Q 004267 553 TMWFGESEANVREIF-DKARQ-----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGA 626 (764)
Q Consensus 553 ~~~~g~se~~i~~~f-~~a~~-----~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~a 626 (764)
....++..+ +.++. ..+.++++||+|.+.. ...+.|+..++.... ...+|.+
T Consensus 81 ------~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~--------------~~~~~L~~~le~~~~--~~~lIl~ 138 (319)
T PRK00440 81 ------GIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS--------------DAQQALRRTMEMYSQ--NTRFILS 138 (319)
T ss_pred ------chHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH--------------HHHHHHHHHHhcCCC--CCeEEEE
Confidence 111222222 22221 2346999999998733 123456666665433 2345556
Q ss_pred CCCCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCCCCHHHHHHHHHHHHH
Q 004267 627 TNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRACK 700 (764)
Q Consensus 627 Tn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~~g~sg~di~~~~~~a~~ 700 (764)
+|.+..+.+++.+ |+. .++|++|+.++...+++.++++.++. ++..+..+++.+.| +.+.+.+.++.++.
T Consensus 139 ~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g-d~r~~~~~l~~~~~ 209 (319)
T PRK00440 139 CNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG-DMRKAINALQAAAA 209 (319)
T ss_pred eCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 6777777777776 776 68999999999999999998776553 33457778877654 55555555554443
No 198
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.25 E-value=6.8e-11 Score=136.79 Aligned_cols=182 Identities=20% Similarity=0.286 Sum_probs=126.4
Q ss_pred CccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCe--------------
Q 004267 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 542 (764)
Q Consensus 477 ~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~-------------- 542 (764)
...|+++.|++.+++.|...+... +...++||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~~f~~liGq~~i~~~L~~~l~~~------------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~ 79 (620)
T PRK14948 12 PQRFDELVGQEAIATTLKNALISN------------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCE 79 (620)
T ss_pred CCcHhhccChHHHHHHHHHHHHcC------------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccH
Confidence 356899999999999887765421 223469999999999999999999987542
Q ss_pred ------------eEEEecccchhcccCcchHHHHHHHHHHhhC----CCeEEEEecccchhhccCCCCCCCCcchHHHHH
Q 004267 543 ------------FISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSVGDAGGAADRVLN 606 (764)
Q Consensus 543 ------------~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~----~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~ 606 (764)
++.++. ..+.....+|++.+.+... ...|+||||+|.+- ....+
T Consensus 80 ~C~~i~~g~h~D~~ei~~------~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt--------------~~a~n 139 (620)
T PRK14948 80 LCRAIAAGNALDVIEIDA------ASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS--------------TAAFN 139 (620)
T ss_pred HHHHHhcCCCccEEEEec------cccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC--------------HHHHH
Confidence 222221 1123456788888777543 34699999999873 34568
Q ss_pred HHHHhhcCCCCCCcEEEEecCCCCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCC
Q 004267 607 QLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS-KDVDLRALAKYTQG 685 (764)
Q Consensus 607 ~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~~g 685 (764)
.||..|+. ....+++|++|+.++.+-+.+++ |+. .+.|+.++.++....++...++.++. .+..+..+++.+.|
T Consensus 140 aLLK~LEe--Pp~~tvfIL~t~~~~~llpTIrS--Rc~-~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G 214 (620)
T PRK14948 140 ALLKTLEE--PPPRVVFVLATTDPQRVLPTIIS--RCQ-RFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQG 214 (620)
T ss_pred HHHHHHhc--CCcCeEEEEEeCChhhhhHHHHh--hee-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 88999985 33456667777778888888876 874 78899888888777777666554433 22346677777765
Q ss_pred CCHHHHHHHHH
Q 004267 686 FSGADITEICQ 696 (764)
Q Consensus 686 ~sg~di~~~~~ 696 (764)
+.+++.++++
T Consensus 215 -~lr~A~~lLe 224 (620)
T PRK14948 215 -GLRDAESLLD 224 (620)
T ss_pred -CHHHHHHHHH
Confidence 3355544444
No 199
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.25 E-value=1.2e-10 Score=125.82 Aligned_cols=158 Identities=25% Similarity=0.370 Sum_probs=110.3
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhhh
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~ 280 (764)
+..+-+++++.|.++.++.++.++... ..+..++|+||||+|||++++++++.++..++.+++.+ .
T Consensus 14 kyrP~~~~~~~~~~~~~~~l~~~~~~~------------~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~--~ 79 (316)
T PHA02544 14 KYRPSTIDECILPAADKETFKSIVKKG------------RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD--C 79 (316)
T ss_pred ccCCCcHHHhcCcHHHHHHHHHHHhcC------------CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc--c
Confidence 456678999999999999998887631 12446777999999999999999999988888888865 1
Q ss_pred hccchhHHHHHHHHHHH-HhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCCh
Q 004267 281 KLAGESESNLRKAFEEA-EKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDP 359 (764)
Q Consensus 281 ~~~g~~~~~l~~vf~~a-~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld~ 359 (764)
. .......+....... ....+.+++|||+|.+... .....|...++.... .+.+|.+||.+..+.+
T Consensus 80 ~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~----------~~~~~L~~~le~~~~--~~~~Ilt~n~~~~l~~ 146 (316)
T PHA02544 80 R-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLA----------DAQRHLRSFMEAYSK--NCSFIITANNKNGIIE 146 (316)
T ss_pred c-HHHHHHHHHHHHHhhcccCCCeEEEEECcccccCH----------HHHHHHHHHHHhcCC--CceEEEEcCChhhchH
Confidence 1 111112222221111 1135689999999877211 122345555665433 5567778898889999
Q ss_pred hhhccCCcceEEEecCCChHHHHHHHHHH
Q 004267 360 ALRRFGRFDREIDIGVPDEVGRLEVLRIH 388 (764)
Q Consensus 360 al~r~~rf~~~i~i~~p~~~~R~~il~~~ 388 (764)
.+++ |+ ..+.++.|+.+++.++++..
T Consensus 147 ~l~s--R~-~~i~~~~p~~~~~~~il~~~ 172 (316)
T PHA02544 147 PLRS--RC-RVIDFGVPTKEEQIEMMKQM 172 (316)
T ss_pred HHHh--hc-eEEEeCCCCHHHHHHHHHHH
Confidence 9998 77 46899999999998777644
No 200
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.25 E-value=8.5e-11 Score=132.77 Aligned_cols=156 Identities=24% Similarity=0.407 Sum_probs=106.9
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh-----CCeEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEEccccccCCCC
Q 004267 243 KGILLYGPPGSGKTLIARAVANET-----GAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKR 317 (764)
Q Consensus 243 ~~vLL~GppGtGKTtLar~la~~l-----~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~ 317 (764)
..++||||||||||+|++++++++ +..++.+++.++...+..........-|.+... .+++|+|||++.+..+.
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~~ 227 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYR-SVDVLLIDDIQFLAGKE 227 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHh-cCCEEEEehhhhhcCCH
Confidence 569999999999999999999987 456788888887665443322211122322222 46799999999986442
Q ss_pred CCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCC---CChhhhccCCcc--eEEEecCCChHHHHHHHHHHhcCC
Q 004267 318 EKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNS---IDPALRRFGRFD--REIDIGVPDEVGRLEVLRIHTKNM 392 (764)
Q Consensus 318 ~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~---ld~al~r~~rf~--~~i~i~~p~~~~R~~il~~~~~~~ 392 (764)
. ....|+..++.+......+||+++..|.. +++.+++ ||. ..+++..|+.+.|.+|++..+...
T Consensus 228 ~---------~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~ 296 (450)
T PRK00149 228 R---------TQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEE 296 (450)
T ss_pred H---------HHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHc
Confidence 1 22345666655544445567766666655 5678876 775 578999999999999999887643
Q ss_pred CC-CCchhhhHHhhhcCCC
Q 004267 393 KL-SDDVDLERIAKDTHGY 410 (764)
Q Consensus 393 ~l-~~~~~l~~la~~t~g~ 410 (764)
.+ .++..++.++....|-
T Consensus 297 ~~~l~~e~l~~ia~~~~~~ 315 (450)
T PRK00149 297 GIDLPDEVLEFIAKNITSN 315 (450)
T ss_pred CCCCCHHHHHHHHcCcCCC
Confidence 32 2333478888887764
No 201
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.24 E-value=3.5e-11 Score=129.64 Aligned_cols=176 Identities=28% Similarity=0.441 Sum_probs=123.5
Q ss_pred cccChHHHHHHHHHHHHccccChhhhhhhCC-CCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhhh-hccc-h
Q 004267 209 DVGGVRKQMAQIRELVELPLRHPQLFKSIGV-KPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS-KLAG-E 285 (764)
Q Consensus 209 ~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i-~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~-~~~g-~ 285 (764)
.|.|.++.++.+..++...++...+...+.. ..+.++||+||||||||++|++||+.++.+|+.+++..+.. .|.| +
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 4899999999998777543322222111111 13578999999999999999999999999999999887764 5766 4
Q ss_pred hHHHHHHHHHHHH-------------------------------------------------------------------
Q 004267 286 SESNLRKAFEEAE------------------------------------------------------------------- 298 (764)
Q Consensus 286 ~~~~l~~vf~~a~------------------------------------------------------------------- 298 (764)
.+..++.+|+.|.
T Consensus 96 ~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 175 (443)
T PRK05201 96 VESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEI 175 (443)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEE
Confidence 4555565555550
Q ss_pred -----------------------------------------------------------------------hcCCeEEEE
Q 004267 299 -----------------------------------------------------------------------KNAPSIIFI 307 (764)
Q Consensus 299 -----------------------------------------------------------------------~~~p~il~i 307 (764)
...-.|+||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfi 255 (443)
T PRK05201 176 EVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFI 255 (443)
T ss_pred EecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 013469999
Q ss_pred ccccccCCCCCCCchHH-HHHHHHHHHHHhhccc--------CCCeEEEEEec----CCCCCCChhhhccCCcceEEEec
Q 004267 308 DEIDSIAPKREKTHGEV-ERRIVSQLLTLMDGLK--------SRAHVIVIGAT----NRPNSIDPALRRFGRFDREIDIG 374 (764)
Q Consensus 308 DEid~l~~~~~~~~~~~-~~~v~~~Ll~~ld~~~--------~~~~v~vI~at----n~~~~ld~al~r~~rf~~~i~i~ 374 (764)
||||.++...+....++ ..-|...|+.++++-. ...++++|++- ..|.++-|.|. |||...+.+.
T Consensus 256 DEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v~L~ 333 (443)
T PRK05201 256 DEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQ--GRFPIRVELD 333 (443)
T ss_pred EcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHh--CccceEEECC
Confidence 99999997754322222 2335567888887632 22467777532 35666777777 4999999999
Q ss_pred CCChHHHHHHHH
Q 004267 375 VPDEVGRLEVLR 386 (764)
Q Consensus 375 ~p~~~~R~~il~ 386 (764)
.++.++-.+||.
T Consensus 334 ~L~~~dL~~ILt 345 (443)
T PRK05201 334 ALTEEDFVRILT 345 (443)
T ss_pred CCCHHHHHHHhc
Confidence 999999888884
No 202
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.24 E-value=3e-10 Score=127.95 Aligned_cols=194 Identities=23% Similarity=0.269 Sum_probs=130.7
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEE--------
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFC-------- 272 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~-------- 272 (764)
+..+-+|+|+.|.+..++.++..+..- ..+..+||+||+||||||+|+++|+.+++....
T Consensus 14 kyRP~~f~dliGq~~vv~~L~~ai~~~------------ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~ 81 (507)
T PRK06645 14 KYRPSNFAELQGQEVLVKVLSYTILND------------RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKT 81 (507)
T ss_pred hhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCC
Confidence 456678999999999999988766531 224679999999999999999999998652110
Q ss_pred ----Eechhhhh----------hccchhHHHHHHHHHHHHhc----CCeEEEEccccccCCCCCCCchHHHHHHHHHHHH
Q 004267 273 ----INGPEIMS----------KLAGESESNLRKAFEEAEKN----APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLT 334 (764)
Q Consensus 273 ----v~~~~l~~----------~~~g~~~~~l~~vf~~a~~~----~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~ 334 (764)
-+|..+.. .........++.+++.+... ...|++|||+|.+.. ...+.|+.
T Consensus 82 C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~-----------~a~naLLk 150 (507)
T PRK06645 82 CEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK-----------GAFNALLK 150 (507)
T ss_pred CCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCH-----------HHHHHHHH
Confidence 00111110 00112345677777776532 346999999998742 23456666
Q ss_pred HhhcccCCCeEEEEEecCCCCCCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCC-CchhhhHHhhhcCCCchH
Q 004267 335 LMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGA 413 (764)
Q Consensus 335 ~ld~~~~~~~v~vI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~~~~ 413 (764)
.++.. ...+++|.+|+.++.+.+.+++ |+ ..+++..++.++...+++..++..... ++..+..++..+.| ..+
T Consensus 151 ~LEep--p~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~G-slR 224 (507)
T PRK06645 151 TLEEP--PPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEG-SAR 224 (507)
T ss_pred HHhhc--CCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 66643 3466666677888889888887 66 568899999999888888777654432 33457788888877 445
Q ss_pred HHHHHHHHHH
Q 004267 414 DLAALCTEAA 423 (764)
Q Consensus 414 dl~~l~~~a~ 423 (764)
++..++..+.
T Consensus 225 ~al~~Ldkai 234 (507)
T PRK06645 225 DAVSILDQAA 234 (507)
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 203
>PRK05642 DNA replication initiation factor; Validated
Probab=99.23 E-value=1.6e-10 Score=118.77 Aligned_cols=159 Identities=16% Similarity=0.207 Sum_probs=106.1
Q ss_pred cceeeeCCCCCChhHHHHHHHHHh---CCeeEEEecccchhcccCcchHHHHHHHHHHhhCCCeEEEEecccchhhccCC
Q 004267 516 KGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGS 592 (764)
Q Consensus 516 ~gill~GppGtGKT~lak~lA~~~---~~~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~ 592 (764)
..++|+||+|||||+|+++++++. +...+.++..++... ...+.+..+.. .++++||++.+.++.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~--------~~~~~~~~~~~--d~LiiDDi~~~~~~~-- 113 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR--------GPELLDNLEQY--ELVCLDDLDVIAGKA-- 113 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh--------hHHHHHhhhhC--CEEEEechhhhcCCh--
Confidence 558999999999999999999764 556777887776542 12333333333 489999999875421
Q ss_pred CCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCCCC---CccCCCCCccc--eEEeecCCCHHHHHHHHHHHhcc
Q 004267 593 SVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDII---DPALLRPGRLD--QLIYIPLPDEDSRHQIFKACLRK 667 (764)
Q Consensus 593 ~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~l---d~allrpgRf~--~~i~~~~p~~~~r~~Il~~~~~~ 667 (764)
. .-..|+..++.....++.+|++++..|..+ .|.+.+ ||. .++.+.+|+.++|..|++.....
T Consensus 114 -------~---~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~~ 181 (234)
T PRK05642 114 -------D---WEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRASR 181 (234)
T ss_pred -------H---HHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHHH
Confidence 1 122344444444445567777777666533 678877 884 67788999999999999966644
Q ss_pred CCCC-CcccHHHHHHHCCCCCHHHHHHHHHHHH
Q 004267 668 SPVS-KDVDLRALAKYTQGFSGADITEICQRAC 699 (764)
Q Consensus 668 ~~~~-~~~~l~~la~~~~g~sg~di~~~~~~a~ 699 (764)
.++. ++.-++.+++..+ -+.+.+.+++..-.
T Consensus 182 ~~~~l~~ev~~~L~~~~~-~d~r~l~~~l~~l~ 213 (234)
T PRK05642 182 RGLHLTDEVGHFILTRGT-RSMSALFDLLERLD 213 (234)
T ss_pred cCCCCCHHHHHHHHHhcC-CCHHHHHHHHHHHH
Confidence 4443 2333566777665 47777777766544
No 204
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.23 E-value=3.3e-10 Score=131.98 Aligned_cols=184 Identities=17% Similarity=0.241 Sum_probs=122.8
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeE----------
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFF---------- 270 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~---------- 270 (764)
+..+.+|++|.|.+..++.|+.++... ..+..+||+|||||||||+||++|+.+++..
T Consensus 9 KyRP~tFddIIGQe~Iv~~LknaI~~~------------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C 76 (944)
T PRK14949 9 KWRPATFEQMVGQSHVLHALTNALTQQ------------RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVC 76 (944)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCc
Confidence 456778999999999999998887641 1234579999999999999999999987531
Q ss_pred --------------EEEechhhhhhccchhHHHHHHHHHHHH----hcCCeEEEEccccccCCCCCCCchHHHHHHHHHH
Q 004267 271 --------------FCINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 332 (764)
Q Consensus 271 --------------i~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L 332 (764)
+.+++.+ ...-..+|.+.+.+. .....|+||||+|.+. ....+.|
T Consensus 77 ~sC~~i~~g~~~DviEidAas------~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT-----------~eAqNAL 139 (944)
T PRK14949 77 SSCVEIAQGRFVDLIEVDAAS------RTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS-----------RSSFNAL 139 (944)
T ss_pred hHHHHHhcCCCceEEEecccc------ccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC-----------HHHHHHH
Confidence 1111110 011234555555443 2345699999999884 2344677
Q ss_pred HHHhhcccCCCeEEEEEecCCCCCCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCC-CCchhhhHHhhhcCCCc
Q 004267 333 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDDVDLERIAKDTHGYV 411 (764)
Q Consensus 333 l~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l-~~~~~l~~la~~t~g~~ 411 (764)
+..|+.... .+.+|.+|+.+..|.+.+++ |+ ..+.+..++.++-...|+..+....+ .++..+..++..+.|-.
T Consensus 140 LKtLEEPP~--~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd~ 214 (944)
T PRK14949 140 LKTLEEPPE--HVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSM 214 (944)
T ss_pred HHHHhccCC--CeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 777776433 56666678888888888887 66 66888888888877777665543222 23345677777777754
Q ss_pred hHHHHHHH
Q 004267 412 GADLAALC 419 (764)
Q Consensus 412 ~~dl~~l~ 419 (764)
+ +...++
T Consensus 215 R-~ALnLL 221 (944)
T PRK14949 215 R-DALSLT 221 (944)
T ss_pred H-HHHHHH
Confidence 3 333343
No 205
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.23 E-value=2.5e-10 Score=129.26 Aligned_cols=186 Identities=17% Similarity=0.227 Sum_probs=125.4
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCC------------
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA------------ 268 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~------------ 268 (764)
+..+-+|+++.|.+..++.|+.++... ..+..+||+||+|+||||+|+++|+.+++
T Consensus 8 KyRPktFddVIGQe~vv~~L~~aI~~g------------rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C 75 (702)
T PRK14960 8 KYRPRNFNELVGQNHVSRALSSALERG------------RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVC 75 (702)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccC
Confidence 356678999999999999998887631 22457899999999999999999999865
Q ss_pred ------------eEEEEechhhhhhccchhHHHHHHHHHHHH----hcCCeEEEEccccccCCCCCCCchHHHHHHHHHH
Q 004267 269 ------------FFFCINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 332 (764)
Q Consensus 269 ------------~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L 332 (764)
.++.+++.+- ..-..++.+...+. .....|+||||+|.+.. ...+.|
T Consensus 76 ~sC~~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~-----------~A~NAL 138 (702)
T PRK14960 76 ATCKAVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLST-----------HSFNAL 138 (702)
T ss_pred HHHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCH-----------HHHHHH
Confidence 2333333211 12334566655442 23457999999998742 234567
Q ss_pred HHHhhcccCCCeEEEEEecCCCCCCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCC-CCchhhhHHhhhcCCCc
Q 004267 333 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDDVDLERIAKDTHGYV 411 (764)
Q Consensus 333 l~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l-~~~~~l~~la~~t~g~~ 411 (764)
+..++... ..+.+|.+|+.+..+.+.+++ |+ ..+.+..++..+-...++..+....+ .++..+..+++.+.| .
T Consensus 139 LKtLEEPP--~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~G-d 212 (702)
T PRK14960 139 LKTLEEPP--EHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQG-S 212 (702)
T ss_pred HHHHhcCC--CCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 77777643 356666677888888877775 66 56788888888877777665554333 234457778877766 3
Q ss_pred hHHHHHHHHH
Q 004267 412 GADLAALCTE 421 (764)
Q Consensus 412 ~~dl~~l~~~ 421 (764)
.+++..++..
T Consensus 213 LRdALnLLDQ 222 (702)
T PRK14960 213 LRDALSLTDQ 222 (702)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 206
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.23 E-value=7.9e-10 Score=123.22 Aligned_cols=201 Identities=23% Similarity=0.288 Sum_probs=125.5
Q ss_pred ccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHh-----CCeEEEEechhhh---
Q 004267 208 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET-----GAFFFCINGPEIM--- 279 (764)
Q Consensus 208 ~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l-----~~~~i~v~~~~l~--- 279 (764)
+.+.|-++++++|...+.-.+. -..+.+++|+||||||||++++.++..+ +..++.+++....
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~---------~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~ 100 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALR---------GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRY 100 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhC---------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHH
Confidence 4588899999998877753221 1335679999999999999999999876 4567888875331
Q ss_pred -------hhccc--------hhHHHHHHHHHHHHh-cCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCC
Q 004267 280 -------SKLAG--------ESESNLRKAFEEAEK-NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRA 343 (764)
Q Consensus 280 -------~~~~g--------~~~~~l~~vf~~a~~-~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~ 343 (764)
....+ .....+..+.+.... ..+.+|+|||+|.+....+ ...+..|+.+++... ..
T Consensus 101 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~-------~~~l~~l~~~~~~~~-~~ 172 (394)
T PRK00411 101 AIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEG-------NDVLYSLLRAHEEYP-GA 172 (394)
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCC-------chHHHHHHHhhhccC-CC
Confidence 11111 112223333333333 3567999999999872211 123455555555443 23
Q ss_pred eEEEEEecCCCC---CCChhhhccCCc-ceEEEecCCChHHHHHHHHHHhcCC---CCCCchhhhHHhhhcCCCc--hHH
Q 004267 344 HVIVIGATNRPN---SIDPALRRFGRF-DREIDIGVPDEVGRLEVLRIHTKNM---KLSDDVDLERIAKDTHGYV--GAD 414 (764)
Q Consensus 344 ~v~vI~atn~~~---~ld~al~r~~rf-~~~i~i~~p~~~~R~~il~~~~~~~---~l~~~~~l~~la~~t~g~~--~~d 414 (764)
++.+|+++|.++ .+++.+++ || ...+.++.++.++..+|++..+... ...++..++.+++.+.+.. ...
T Consensus 173 ~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~ 250 (394)
T PRK00411 173 RIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARV 250 (394)
T ss_pred eEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHH
Confidence 777888888654 46676665 44 3578999999999999998776431 1223344667777664322 233
Q ss_pred HHHHHHHHHHHHH
Q 004267 415 LAALCTEAALQCI 427 (764)
Q Consensus 415 l~~l~~~a~~~~~ 427 (764)
...+|..|+..+.
T Consensus 251 a~~ll~~a~~~a~ 263 (394)
T PRK00411 251 AIDLLRRAGLIAE 263 (394)
T ss_pred HHHHHHHHHHHHH
Confidence 3456666655443
No 207
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.22 E-value=3.8e-11 Score=133.15 Aligned_cols=186 Identities=19% Similarity=0.280 Sum_probs=124.8
Q ss_pred ccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCe---------------
Q 004267 478 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN--------------- 542 (764)
Q Consensus 478 v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~--------------- 542 (764)
.+|++|.|++.+++.|...+.. | +.+..+||+||||+||||+|+++|+.+.+.
T Consensus 13 ~~~~eiiGq~~~~~~L~~~~~~-----------~-~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~ 80 (397)
T PRK14955 13 KKFADITAQEHITRTIQNSLRM-----------G-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEP 80 (397)
T ss_pred CcHhhccChHHHHHHHHHHHHh-----------C-CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCC
Confidence 4689999999999888765432 1 345569999999999999999999987542
Q ss_pred -----------------eEEEecccchhcccCcchHHHHHHHHHHhh----CCCeEEEEecccchhhccCCCCCCCCcch
Q 004267 543 -----------------FISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAA 601 (764)
Q Consensus 543 -----------------~i~v~~~~l~~~~~g~se~~i~~~f~~a~~----~~p~iifiDEid~l~~~r~~~~~~~~~~~ 601 (764)
++.+++.+. .....|+.+.+.+.. ....|+|+||+|.+..
T Consensus 81 c~~c~~c~~~~~~~~~n~~~~~~~~~------~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~------------- 141 (397)
T PRK14955 81 CGECESCRDFDAGTSLNISEFDAASN------NSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI------------- 141 (397)
T ss_pred CCCCHHHHHHhcCCCCCeEeeccccc------CCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCH-------------
Confidence 222222110 113456666555532 2346999999998732
Q ss_pred HHHHHHHHHhhcCCCCCCcEEEEecCCCCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCC-CcccHHHHH
Q 004267 602 DRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS-KDVDLRALA 680 (764)
Q Consensus 602 ~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la 680 (764)
...+.||..|+... ...++|.+|+.+..+-+++.+ |+. .+.|++++.++....++..+++.++. ++..++.++
T Consensus 142 -~~~~~LLk~LEep~--~~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~ 215 (397)
T PRK14955 142 -AAFNAFLKTLEEPP--PHAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIG 215 (397)
T ss_pred -HHHHHHHHHHhcCC--CCeEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 23567788877533 344555555667777788776 775 89999999998888888887665543 334466777
Q ss_pred HHCCCCCHHHHHHHHHHHHHH
Q 004267 681 KYTQGFSGADITEICQRACKY 701 (764)
Q Consensus 681 ~~~~g~sg~di~~~~~~a~~~ 701 (764)
..+.| +.+.+.+.+..+...
T Consensus 216 ~~s~g-~lr~a~~~L~kl~~~ 235 (397)
T PRK14955 216 RKAQG-SMRDAQSILDQVIAF 235 (397)
T ss_pred HHcCC-CHHHHHHHHHHHHHh
Confidence 77754 666666666655443
No 208
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.22 E-value=6.3e-10 Score=121.26 Aligned_cols=180 Identities=24% Similarity=0.334 Sum_probs=116.6
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhC-----CeEEEEec
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG-----AFFFCING 275 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~-----~~~i~v~~ 275 (764)
+..+-+++++.|.+..++.+..++..+ ...+++|+||||||||++|+++++++. ..++.+++
T Consensus 8 ky~P~~~~~~~g~~~~~~~L~~~~~~~-------------~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~ 74 (337)
T PRK12402 8 KYRPALLEDILGQDEVVERLSRAVDSP-------------NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNV 74 (337)
T ss_pred hhCCCcHHHhcCCHHHHHHHHHHHhCC-------------CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEech
Confidence 345667899999999999998877541 123699999999999999999999874 23567777
Q ss_pred hhhhhhcc-------------ch-------hHHHHHHHHHHHHh-----cCCeEEEEccccccCCCCCCCchHHHHHHHH
Q 004267 276 PEIMSKLA-------------GE-------SESNLRKAFEEAEK-----NAPSIIFIDEIDSIAPKREKTHGEVERRIVS 330 (764)
Q Consensus 276 ~~l~~~~~-------------g~-------~~~~l~~vf~~a~~-----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~ 330 (764)
.++..... +. ....++.+.+.... ..+.+++|||++.+.+ ....
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~-----------~~~~ 143 (337)
T PRK12402 75 ADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRE-----------DAQQ 143 (337)
T ss_pred hhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCH-----------HHHH
Confidence 66532210 00 11223333333333 2346999999997732 1234
Q ss_pred HHHHHhhcccCCCeEEEEEecCCCCCCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCC-CchhhhHHhhhcCC
Q 004267 331 QLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHG 409 (764)
Q Consensus 331 ~Ll~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g 409 (764)
.|...++..... ..+|.+++.+..+.+.+++ |+ ..+++..|+.++...+++..++...+. ++..++.++..+.|
T Consensus 144 ~L~~~le~~~~~--~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~g 218 (337)
T PRK12402 144 ALRRIMEQYSRT--CRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGG 218 (337)
T ss_pred HHHHHHHhccCC--CeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 566666655433 2344455556667777776 55 568899999999988888776544332 34457777776643
No 209
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.22 E-value=2.4e-10 Score=112.13 Aligned_cols=195 Identities=22% Similarity=0.343 Sum_probs=135.9
Q ss_pred eeccCccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHh---CCeeEEEecc
Q 004267 473 VEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGP 549 (764)
Q Consensus 473 ~~~~~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~---~~~~i~v~~~ 549 (764)
...+.+...+|.|.+.+|+.|.+.... |.. | .|..++||+|.-|||||+|+||+-++. +...+.|+-.
T Consensus 52 ~~~~~i~L~~l~Gvd~qk~~L~~NT~~-------F~~-G-~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~ 122 (287)
T COG2607 52 PDPDPIDLADLVGVDRQKEALVRNTEQ-------FAE-G-LPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKE 122 (287)
T ss_pred CCCCCcCHHHHhCchHHHHHHHHHHHH-------HHc-C-CcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHH
Confidence 345568889999999999988765432 222 2 345679999999999999999999876 4567888877
Q ss_pred cchhcccCcchHHHHHHHHHHhhCC-CeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCC--CCCcEEEEec
Q 004267 550 ELLTMWFGESEANVREIFDKARQSA-PCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS--AKKTVFIIGA 626 (764)
Q Consensus 550 ~l~~~~~g~se~~i~~~f~~a~~~~-p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~--~~~~v~vi~a 626 (764)
++.. +-.+++..+..+ .-|||+|+.-. + ..+.-...|-..|||.- ...+|+|.+|
T Consensus 123 dl~~---------Lp~l~~~Lr~~~~kFIlFcDDLSF----------e---~gd~~yK~LKs~LeG~ve~rP~NVl~YAT 180 (287)
T COG2607 123 DLAT---------LPDLVELLRARPEKFILFCDDLSF----------E---EGDDAYKALKSALEGGVEGRPANVLFYAT 180 (287)
T ss_pred HHhh---------HHHHHHHHhcCCceEEEEecCCCC----------C---CCchHHHHHHHHhcCCcccCCCeEEEEEe
Confidence 7643 445555554433 34899998744 1 11223455556677753 3569999999
Q ss_pred CCCCCCCCccC--------------------CCCCccceEEeecCCCHHHHHHHHHHHhccCCCCCcc-cHHH----HHH
Q 004267 627 TNRPDIIDPAL--------------------LRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDV-DLRA----LAK 681 (764)
Q Consensus 627 Tn~~~~ld~al--------------------lrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~-~l~~----la~ 681 (764)
+||.+.|..-+ .-..||...+.|++++.++...|+..+.++.+++-+. .+.. .|.
T Consensus 181 SNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt 260 (287)
T COG2607 181 SNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWAT 260 (287)
T ss_pred cCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 99977664211 1125999999999999999999999999998877532 2322 233
Q ss_pred HCCCCCHHHHHHHHHHH
Q 004267 682 YTQGFSGADITEICQRA 698 (764)
Q Consensus 682 ~~~g~sg~di~~~~~~a 698 (764)
.-.|-||+-..+.++..
T Consensus 261 ~rg~RSGR~A~QF~~~~ 277 (287)
T COG2607 261 TRGGRSGRVAWQFIRDL 277 (287)
T ss_pred hcCCCccHhHHHHHHHH
Confidence 34567887777666543
No 210
>PRK06893 DNA replication initiation factor; Validated
Probab=99.22 E-value=1.2e-10 Score=119.43 Aligned_cols=150 Identities=16% Similarity=0.237 Sum_probs=97.9
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh---CCeEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCC
Q 004267 243 KGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREK 319 (764)
Q Consensus 243 ~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~ 319 (764)
..++|+||||||||+|++++|+++ +.....++.... ......+++.. ....+|+|||++.+..+..
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~--------~~~~~~~~~~~--~~~dlLilDDi~~~~~~~~- 108 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKS--------QYFSPAVLENL--EQQDLVCLDDLQAVIGNEE- 108 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHh--------hhhhHHHHhhc--ccCCEEEEeChhhhcCChH-
Confidence 458999999999999999999886 223333433211 11111233333 2457999999998864321
Q ss_pred CchHHHHHHHHHHHHHhhcccCCC-eEEEEEecCCCCCCC---hhhhccCCcceEEEecCCChHHHHHHHHHHhc--CCC
Q 004267 320 THGEVERRIVSQLLTLMDGLKSRA-HVIVIGATNRPNSID---PALRRFGRFDREIDIGVPDEVGRLEVLRIHTK--NMK 393 (764)
Q Consensus 320 ~~~~~~~~v~~~Ll~~ld~~~~~~-~v~vI~atn~~~~ld---~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~--~~~ 393 (764)
....|..+++...... .++|++++..|..++ +.+++..++...+.++.|+.+.|.++++..+. ++.
T Consensus 109 --------~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~ 180 (229)
T PRK06893 109 --------WELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIE 180 (229)
T ss_pred --------HHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 1234666666555444 455666666676654 78887556667889999999999999996654 344
Q ss_pred CCCchhhhHHhhhcCCCch
Q 004267 394 LSDDVDLERIAKDTHGYVG 412 (764)
Q Consensus 394 l~~~~~l~~la~~t~g~~~ 412 (764)
+.+ ..+..++++..|-..
T Consensus 181 l~~-~v~~~L~~~~~~d~r 198 (229)
T PRK06893 181 LSD-EVANFLLKRLDRDMH 198 (229)
T ss_pred CCH-HHHHHHHHhccCCHH
Confidence 443 347788888776443
No 211
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.21 E-value=2.1e-10 Score=127.97 Aligned_cols=168 Identities=25% Similarity=0.394 Sum_probs=109.3
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHh-----CCeEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEEccccccCCC
Q 004267 242 PKGILLYGPPGSGKTLIARAVANET-----GAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPK 316 (764)
Q Consensus 242 ~~~vLL~GppGtGKTtLar~la~~l-----~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~ 316 (764)
...++||||+|+|||+|++++++++ +..++.+++.++...+..........-|.... ..+++|+|||++.+..+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlLiiDDi~~l~~~ 214 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKY-RSVDLLLIDDIQFLAGK 214 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHH-HhCCEEEEehhhhhcCC
Confidence 3569999999999999999999887 46688888877765433222111111122221 23579999999998644
Q ss_pred CCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCC---CChhhhccCCcc--eEEEecCCChHHHHHHHHHHhcC
Q 004267 317 REKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNS---IDPALRRFGRFD--REIDIGVPDEVGRLEVLRIHTKN 391 (764)
Q Consensus 317 ~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~---ld~al~r~~rf~--~~i~i~~p~~~~R~~il~~~~~~ 391 (764)
. .....++..++.+...+..+||+++..|.. +++.+++ ||. ..+.++.|+.+.|.+|++..+..
T Consensus 215 ~---------~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~ 283 (405)
T TIGR00362 215 E---------RTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEE 283 (405)
T ss_pred H---------HHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 2 112345555655544445566666666654 4566776 775 47899999999999999988765
Q ss_pred CCCC-CchhhhHHhhhcCCCchHHHHHHHHHH
Q 004267 392 MKLS-DDVDLERIAKDTHGYVGADLAALCTEA 422 (764)
Q Consensus 392 ~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~a 422 (764)
..+. ++..++.++....+- .+++...+...
T Consensus 284 ~~~~l~~e~l~~ia~~~~~~-~r~l~~~l~~l 314 (405)
T TIGR00362 284 EGLELPDEVLEFIAKNIRSN-VRELEGALNRL 314 (405)
T ss_pred cCCCCCHHHHHHHHHhcCCC-HHHHHHHHHHH
Confidence 4332 344578888877664 34444444433
No 212
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.21 E-value=4.9e-10 Score=128.80 Aligned_cols=179 Identities=17% Similarity=0.271 Sum_probs=123.4
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCe-----------
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 269 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~----------- 269 (764)
+..+-+|++|.|.+..++.|+..+... .-+..+||+||+|+||||+|+.+|+.+++.
T Consensus 9 KyRP~~f~divGQe~vv~~L~~~l~~~------------rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C 76 (647)
T PRK07994 9 KWRPQTFAEVVGQEHVLTALANALDLG------------RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGEC 76 (647)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCC
Confidence 345678999999999999998887641 123458999999999999999999998652
Q ss_pred -------------EEEEechhhhhhccchhHHHHHHHHHHHH----hcCCeEEEEccccccCCCCCCCchHHHHHHHHHH
Q 004267 270 -------------FFCINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 332 (764)
Q Consensus 270 -------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L 332 (764)
++.+++.. ...-..++.+.+.+. .....|+||||+|.+.. ...+.|
T Consensus 77 ~~C~~i~~g~~~D~ieidaas------~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~-----------~a~NAL 139 (647)
T PRK07994 77 DNCREIEQGRFVDLIEIDAAS------RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSR-----------HSFNAL 139 (647)
T ss_pred HHHHHHHcCCCCCceeecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCH-----------HHHHHH
Confidence 22333221 011234555555433 33456999999998842 234667
Q ss_pred HHHhhcccCCCeEEEEEecCCCCCCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCC-CchhhhHHhhhcCCCc
Q 004267 333 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYV 411 (764)
Q Consensus 333 l~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~~ 411 (764)
+..|+.-. ..+.+|.+|+++..+.+.+++ |+ ..+.+..++.++-...|+..+....+. ++..+..++..+.|-.
T Consensus 140 LKtLEEPp--~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs~ 214 (647)
T PRK07994 140 LKTLEEPP--EHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSM 214 (647)
T ss_pred HHHHHcCC--CCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 77777643 366677778888899988887 75 778999999888777777655433332 3345677887777754
Q ss_pred hH
Q 004267 412 GA 413 (764)
Q Consensus 412 ~~ 413 (764)
+.
T Consensus 215 R~ 216 (647)
T PRK07994 215 RD 216 (647)
T ss_pred HH
Confidence 43
No 213
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.20 E-value=7.9e-11 Score=125.98 Aligned_cols=160 Identities=21% Similarity=0.360 Sum_probs=101.1
Q ss_pred CccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHh-------CC--eeEEEe
Q 004267 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC-------QA--NFISVK 547 (764)
Q Consensus 477 ~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~-------~~--~~i~v~ 547 (764)
.+.|++|.|++++++.+.-.... ....|+||+|+||||||++|+++|..+ +. ++..+.
T Consensus 4 ~~~f~~i~Gq~~~~~~l~~~~~~-------------~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~ 70 (334)
T PRK13407 4 PFPFSAIVGQEEMKQAMVLTAID-------------PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPE 70 (334)
T ss_pred CCCHHHhCCHHHHHHHHHHHHhc-------------cCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCccc
Confidence 46789999999998876532211 112469999999999999999999987 22 222221
Q ss_pred c-ccc--------hh---------------cccCcc--hHHH---HHHHHHH--hhCCCeEEEEecccchhhccCCCCCC
Q 004267 548 G-PEL--------LT---------------MWFGES--EANV---REIFDKA--RQSAPCVLFFDELDSIATQRGSSVGD 596 (764)
Q Consensus 548 ~-~~l--------~~---------------~~~g~s--e~~i---~~~f~~a--~~~~p~iifiDEid~l~~~r~~~~~~ 596 (764)
+ +++ .. ..+|.. ++.+ ...|+.- ......++|+|||+.+-
T Consensus 71 ~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~--------- 141 (334)
T PRK13407 71 DCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLE--------- 141 (334)
T ss_pred CCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCC---------
Confidence 1 111 00 011210 0000 0012110 00111499999999863
Q ss_pred CCcchHHHHHHHHHhhcCCC-----------CCCcEEEEecCCCCC-CCCccCCCCCccceEEeecCCCH-HHHHHHHHH
Q 004267 597 AGGAADRVLNQLLTEMDGMS-----------AKKTVFIIGATNRPD-IIDPALLRPGRLDQLIYIPLPDE-DSRHQIFKA 663 (764)
Q Consensus 597 ~~~~~~~~~~~lL~~ld~~~-----------~~~~v~vi~aTn~~~-~ld~allrpgRf~~~i~~~~p~~-~~r~~Il~~ 663 (764)
..+.+.|+..|+... ...++++++|+|..+ .+.++++. ||...+.+++|.. ++|.+|++.
T Consensus 142 -----~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~~ 214 (334)
T PRK13407 142 -----DHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIRR 214 (334)
T ss_pred -----HHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHH
Confidence 345666777665321 234788999999755 58889988 9999999998866 999999987
Q ss_pred Hh
Q 004267 664 CL 665 (764)
Q Consensus 664 ~~ 665 (764)
..
T Consensus 215 ~~ 216 (334)
T PRK13407 215 RD 216 (334)
T ss_pred hh
Confidence 54
No 214
>PRK06620 hypothetical protein; Validated
Probab=99.20 E-value=1.4e-10 Score=117.18 Aligned_cols=143 Identities=19% Similarity=0.272 Sum_probs=93.6
Q ss_pred cceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccchhcccCcchHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCC
Q 004267 516 KGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVG 595 (764)
Q Consensus 516 ~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~ 595 (764)
..++||||||||||+|+++++...+..++. .... ....+ . ...++++|||+.+-
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~-----------~~~~~----~-~~d~lliDdi~~~~-------- 98 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFF-----------NEEIL----E-KYNAFIIEDIENWQ-------- 98 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhh-----------chhHH----h-cCCEEEEeccccch--------
Confidence 569999999999999999999987754332 1100 01111 1 22689999999531
Q ss_pred CCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCCC--CCccCCCCCccc--eEEeecCCCHHHHHHHHHHHhccCCCC
Q 004267 596 DAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDI--IDPALLRPGRLD--QLIYIPLPDEDSRHQIFKACLRKSPVS 671 (764)
Q Consensus 596 ~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~--ld~allrpgRf~--~~i~~~~p~~~~r~~Il~~~~~~~~~~ 671 (764)
...+-.+++.+ ...++.++|+++..|.. + |++++ |+. .++.+.+||.+.+..+++...+..++.
T Consensus 99 ------~~~lf~l~N~~---~e~g~~ilits~~~p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~ 166 (214)
T PRK06620 99 ------EPALLHIFNII---NEKQKYLLLTSSDKSRNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVT 166 (214)
T ss_pred ------HHHHHHHHHHH---HhcCCEEEEEcCCCccccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCC
Confidence 11222333322 23456777877766654 4 67766 876 478899999999999999888655543
Q ss_pred C-cccHHHHHHHCCCCCHHHHHHHHHH
Q 004267 672 K-DVDLRALAKYTQGFSGADITEICQR 697 (764)
Q Consensus 672 ~-~~~l~~la~~~~g~sg~di~~~~~~ 697 (764)
- +.-++.|++...+ +.+.+.+++..
T Consensus 167 l~~ev~~~L~~~~~~-d~r~l~~~l~~ 192 (214)
T PRK06620 167 ISRQIIDFLLVNLPR-EYSKIIEILEN 192 (214)
T ss_pred CCHHHHHHHHHHccC-CHHHHHHHHHH
Confidence 2 3346677777653 66777766665
No 215
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.20 E-value=1.7e-10 Score=129.20 Aligned_cols=155 Identities=21% Similarity=0.362 Sum_probs=103.3
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh-----CCeEEEEechhhhhhccchhH-HHHHHHHHHHHhcCCeEEEEccccccCCC
Q 004267 243 KGILLYGPPGSGKTLIARAVANET-----GAFFFCINGPEIMSKLAGESE-SNLRKAFEEAEKNAPSIIFIDEIDSIAPK 316 (764)
Q Consensus 243 ~~vLL~GppGtGKTtLar~la~~l-----~~~~i~v~~~~l~~~~~g~~~-~~l~~vf~~a~~~~p~il~iDEid~l~~~ 316 (764)
.+++||||+|||||+|++++++++ +..++.+++.++...+..... ..+.. |.......+.+|+|||++.+..+
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~~ 209 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIGK 209 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcCc
Confidence 469999999999999999999986 356788888776654432211 11222 22222235789999999988643
Q ss_pred CCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCC---ChhhhccCCc--ceEEEecCCChHHHHHHHHHHhcC
Q 004267 317 REKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI---DPALRRFGRF--DREIDIGVPDEVGRLEVLRIHTKN 391 (764)
Q Consensus 317 ~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~l---d~al~r~~rf--~~~i~i~~p~~~~R~~il~~~~~~ 391 (764)
.. ....++..++.+...+..+|+++.+.|..+ .+.+++ || ...+.+..|+.+.|..|++..+..
T Consensus 210 ~~---------~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~ 278 (440)
T PRK14088 210 TG---------VQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEI 278 (440)
T ss_pred HH---------HHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHh
Confidence 21 123455555555555556777666777654 455555 55 356789999999999999987653
Q ss_pred --CCCCCchhhhHHhhhcCCC
Q 004267 392 --MKLSDDVDLERIAKDTHGY 410 (764)
Q Consensus 392 --~~l~~~~~l~~la~~t~g~ 410 (764)
+.+.+ ..+..++....+-
T Consensus 279 ~~~~l~~-ev~~~Ia~~~~~~ 298 (440)
T PRK14088 279 EHGELPE-EVLNFVAENVDDN 298 (440)
T ss_pred cCCCCCH-HHHHHHHhccccC
Confidence 44443 3478888887764
No 216
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.19 E-value=1.3e-10 Score=133.66 Aligned_cols=186 Identities=20% Similarity=0.285 Sum_probs=125.6
Q ss_pred ccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCe---------------
Q 004267 478 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN--------------- 542 (764)
Q Consensus 478 v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~--------------- 542 (764)
.+|+++.|++.+++.|+..+.. -+.+.++||+||+||||||+|+++|+.+.+.
T Consensus 13 ~~f~eivGQe~i~~~L~~~i~~------------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~ 80 (620)
T PRK14954 13 SKFADITAQEHITHTIQNSLRM------------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEP 80 (620)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCC
Confidence 5689999999999988765432 1344569999999999999999999987542
Q ss_pred -----------------eEEEecccchhcccCcchHHHHHHHHHHh----hCCCeEEEEecccchhhccCCCCCCCCcch
Q 004267 543 -----------------FISVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSVGDAGGAA 601 (764)
Q Consensus 543 -----------------~i~v~~~~l~~~~~g~se~~i~~~f~~a~----~~~p~iifiDEid~l~~~r~~~~~~~~~~~ 601 (764)
++.+++... .+...|+.+-+.+. .....|+++||+|.+..
T Consensus 81 Cg~C~sC~~~~~g~~~n~~~~d~~s~------~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~------------- 141 (620)
T PRK14954 81 CGECESCRDFDAGTSLNISEFDAASN------NSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLST------------- 141 (620)
T ss_pred CccCHHHHHHhccCCCCeEEeccccc------CCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH-------------
Confidence 222222110 11345666655553 23457999999988732
Q ss_pred HHHHHHHHHhhcCCCCCCcEEEEecCCCCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCC-CcccHHHHH
Q 004267 602 DRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS-KDVDLRALA 680 (764)
Q Consensus 602 ~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la 680 (764)
...+.||..|+...+ .+++|.+|+.++.|-+.+.+ |. ..+.|.+++.++....++..+++.++. ++..++.|+
T Consensus 142 -~a~naLLK~LEePp~--~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La 215 (620)
T PRK14954 142 -AAFNAFLKTLEEPPP--HAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIA 215 (620)
T ss_pred -HHHHHHHHHHhCCCC--CeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 346788888886433 34555555667888888876 77 489999999999888888877665542 344577778
Q ss_pred HHCCCCCHHHHHHHHHHHHHH
Q 004267 681 KYTQGFSGADITEICQRACKY 701 (764)
Q Consensus 681 ~~~~g~sg~di~~~~~~a~~~ 701 (764)
..+.| +.+++.+.+......
T Consensus 216 ~~s~G-dlr~al~eLeKL~~y 235 (620)
T PRK14954 216 RKAQG-SMRDAQSILDQVIAF 235 (620)
T ss_pred HHhCC-CHHHHHHHHHHHHHh
Confidence 77764 555555555544333
No 217
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.19 E-value=4.2e-10 Score=106.00 Aligned_cols=121 Identities=48% Similarity=0.752 Sum_probs=80.0
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHh---CCeEEEEechhhhhhccchhHHH---HHHHHHHHHhcCCeEEEEccccccC
Q 004267 241 PPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGESESN---LRKAFEEAEKNAPSIIFIDEIDSIA 314 (764)
Q Consensus 241 ~~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~~~g~~~~~---l~~vf~~a~~~~p~il~iDEid~l~ 314 (764)
.+.+++|+||||||||++++.+++.+ +..++.+++.+............ ....+.......+.++++||++.+.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~ 97 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS 97 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhh
Confidence 46789999999999999999999998 77888888876654332211111 1222333445668899999998762
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhcccC----CCeEEEEEecCCCC--CCChhhhccCCcceEEEec
Q 004267 315 PKREKTHGEVERRIVSQLLTLMDGLKS----RAHVIVIGATNRPN--SIDPALRRFGRFDREIDIG 374 (764)
Q Consensus 315 ~~~~~~~~~~~~~v~~~Ll~~ld~~~~----~~~v~vI~atn~~~--~ld~al~r~~rf~~~i~i~ 374 (764)
+ .....+...+..... ...+.+|++++... .+++.+.. ||+..+.++
T Consensus 98 ~-----------~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~ 150 (151)
T cd00009 98 R-----------GAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIP 150 (151)
T ss_pred H-----------HHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecC
Confidence 1 122344444444432 35778888888776 56666665 787666654
No 218
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.18 E-value=4.6e-10 Score=122.94 Aligned_cols=218 Identities=27% Similarity=0.336 Sum_probs=131.8
Q ss_pred cccChHHHHHHHHHHHHccccChhhhhh----hCC-CCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhhh-hc
Q 004267 209 DVGGVRKQMAQIRELVELPLRHPQLFKS----IGV-KPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS-KL 282 (764)
Q Consensus 209 ~i~Gl~~~~~~l~e~i~~~l~~~~~~~~----l~i-~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~-~~ 282 (764)
.+.|.++.++.+...+...++.-..... -++ ....++||+||||||||++|+++|..++.+|..+++..+.. .|
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gy 157 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGY 157 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcccccc
Confidence 4899999999887766321111100000 011 12458999999999999999999999999999888877642 46
Q ss_pred cchh-HHHHHHHHHHH----HhcCCeEEEEccccccCCCCCCCch---HHHHHHHHHHHHHhhcccC-----------CC
Q 004267 283 AGES-ESNLRKAFEEA----EKNAPSIIFIDEIDSIAPKREKTHG---EVERRIVSQLLTLMDGLKS-----------RA 343 (764)
Q Consensus 283 ~g~~-~~~l~~vf~~a----~~~~p~il~iDEid~l~~~~~~~~~---~~~~~v~~~Ll~~ld~~~~-----------~~ 343 (764)
.|.. +..+...++.+ ....+++|||||+|.+.++...++. .....+.+.|+..|++... ..
T Consensus 158 vG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~ 237 (413)
T TIGR00382 158 VGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQ 237 (413)
T ss_pred ccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCC
Confidence 6653 34445544432 3456789999999999876443211 1112466778888865421 12
Q ss_pred eEEEEEecCCCC--------------------------C------------------------CChhhhccCCcceEEEe
Q 004267 344 HVIVIGATNRPN--------------------------S------------------------IDPALRRFGRFDREIDI 373 (764)
Q Consensus 344 ~v~vI~atn~~~--------------------------~------------------------ld~al~r~~rf~~~i~i 373 (764)
+.++|.|+|-.. . +.|++ .+|++..+.+
T Consensus 238 ~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEf--lgRld~Iv~f 315 (413)
T TIGR00382 238 EFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEF--IGRLPVIATL 315 (413)
T ss_pred CeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHH--hCCCCeEeec
Confidence 456666666510 0 11122 2588888888
Q ss_pred cCCChHHHHHHHHHH----hc---------CCCCC-CchhhhHHhhh--cCCCchHHHHHHHHHHHHHHHH
Q 004267 374 GVPDEVGRLEVLRIH----TK---------NMKLS-DDVDLERIAKD--THGYVGADLAALCTEAALQCIR 428 (764)
Q Consensus 374 ~~p~~~~R~~il~~~----~~---------~~~l~-~~~~l~~la~~--t~g~~~~dl~~l~~~a~~~~~~ 428 (764)
...+.+...+|+... .+ +..+. ++.-++.+++. ...|-++.+..++.......+-
T Consensus 316 ~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~ 386 (413)
T TIGR00382 316 EKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMF 386 (413)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHh
Confidence 888888888887642 11 11111 22335666664 3456666676666665554443
No 219
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.18 E-value=1.3e-10 Score=109.63 Aligned_cols=122 Identities=45% Similarity=0.685 Sum_probs=83.1
Q ss_pred CCcceeeeCCCCCChhHHHHHHHHHh---CCeeEEEecccchhcccCcchHH---HHHHHHHHhhCCCeEEEEecccchh
Q 004267 514 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGESEAN---VREIFDKARQSAPCVLFFDELDSIA 587 (764)
Q Consensus 514 ~~~gill~GppGtGKT~lak~lA~~~---~~~~i~v~~~~l~~~~~g~se~~---i~~~f~~a~~~~p~iifiDEid~l~ 587 (764)
...+++++||||||||++++.++... +.+++.+++.+....+....... ....+..+....+.++++||++.+.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~ 97 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS 97 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhh
Confidence 34569999999999999999999988 88889888877654332221111 1223344455667899999999862
Q ss_pred hccCCCCCCCCcchHHHHHHHHHhhcCCCC----CCcEEEEecCCCCC--CCCccCCCCCccceEEeecC
Q 004267 588 TQRGSSVGDAGGAADRVLNQLLTEMDGMSA----KKTVFIIGATNRPD--IIDPALLRPGRLDQLIYIPL 651 (764)
Q Consensus 588 ~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~----~~~v~vi~aTn~~~--~ld~allrpgRf~~~i~~~~ 651 (764)
. .....++..+..... ..++.+|++||... .+++.+.. ||+..+++++
T Consensus 98 ~--------------~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~~ 151 (151)
T cd00009 98 R--------------GAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIPL 151 (151)
T ss_pred H--------------HHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecCC
Confidence 2 122333333333322 35788889998877 67777776 9998888774
No 220
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.18 E-value=1.1e-09 Score=124.09 Aligned_cols=177 Identities=21% Similarity=0.283 Sum_probs=120.7
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCe-----------
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 269 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~----------- 269 (764)
+..+.+|+|+.|.++.++.|+.++... ..+..+||+|||||||||+|+++|+.+...
T Consensus 7 KyRP~~~~dvvGq~~v~~~L~~~i~~~------------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~ 74 (504)
T PRK14963 7 RARPITFDEVVGQEHVKEVLLAALRQG------------RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECE 74 (504)
T ss_pred hhCCCCHHHhcChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcCh
Confidence 456778999999999999998887641 224457999999999999999999988531
Q ss_pred ------------EEEEechhhhhhccchhHHHHHHHHHHHH----hcCCeEEEEccccccCCCCCCCchHHHHHHHHHHH
Q 004267 270 ------------FFCINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLL 333 (764)
Q Consensus 270 ------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll 333 (764)
++.+++.. ...-..++.+.+.+. ...+.++||||+|.+. ....+.|+
T Consensus 75 sc~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls-----------~~a~naLL 137 (504)
T PRK14963 75 SCLAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS-----------KSAFNALL 137 (504)
T ss_pred hhHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccC-----------HHHHHHHH
Confidence 33444321 112234555544333 2456799999998662 22345566
Q ss_pred HHhhcccCCCeEEEEEecCCCCCCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCC-CchhhhHHhhhcCCCc
Q 004267 334 TLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYV 411 (764)
Q Consensus 334 ~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~~ 411 (764)
..++... ..+++|.+|+.+..+.+.+++ |+ ..+.+..|+.++-...++..+....+. ++..+..++..+.|-.
T Consensus 138 k~LEep~--~~t~~Il~t~~~~kl~~~I~S--Rc-~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~Gdl 211 (504)
T PRK14963 138 KTLEEPP--EHVIFILATTEPEKMPPTILS--RT-QHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAM 211 (504)
T ss_pred HHHHhCC--CCEEEEEEcCChhhCChHHhc--ce-EEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 6666532 356666678888889998887 55 468999999998888887666543332 3345777777777643
No 221
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.17 E-value=1e-09 Score=112.96 Aligned_cols=149 Identities=17% Similarity=0.208 Sum_probs=94.3
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhC---CeEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCC
Q 004267 242 PKGILLYGPPGSGKTLIARAVANETG---AFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKRE 318 (764)
Q Consensus 242 ~~~vLL~GppGtGKTtLar~la~~l~---~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~ 318 (764)
+..++|+||+|||||+|++++++.+. ..+..++..+... ....+++.... ..+++|||++.+..+.
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~--------~~~~~~~~~~~--~dlliiDdi~~~~~~~- 113 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAW--------FVPEVLEGMEQ--LSLVCIDNIECIAGDE- 113 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhh--------hhHHHHHHhhh--CCEEEEeChhhhcCCH-
Confidence 35799999999999999999998764 3344444433211 11122222222 2589999999875331
Q ss_pred CCchHHHHHHHHHHHHHhhcccCCCe-EEEEEecCCCCC---CChhhhccCCcc--eEEEecCCChHHHHHHHHHHhcC-
Q 004267 319 KTHGEVERRIVSQLLTLMDGLKSRAH-VIVIGATNRPNS---IDPALRRFGRFD--REIDIGVPDEVGRLEVLRIHTKN- 391 (764)
Q Consensus 319 ~~~~~~~~~v~~~Ll~~ld~~~~~~~-v~vI~atn~~~~---ld~al~r~~rf~--~~i~i~~p~~~~R~~il~~~~~~- 391 (764)
.....|..+++.....++ -+++.+++.|.. +.|.|++ |+. ..+.+..|+.+++.++++..+..
T Consensus 114 --------~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~ 183 (235)
T PRK08084 114 --------LWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARLR 183 (235)
T ss_pred --------HHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHHc
Confidence 122345555555444444 355555556555 5788988 664 77899999999999999875443
Q ss_pred -CCCCCchhhhHHhhhcCCCch
Q 004267 392 -MKLSDDVDLERIAKDTHGYVG 412 (764)
Q Consensus 392 -~~l~~~~~l~~la~~t~g~~~ 412 (764)
+.+.+ .-++.++.+..|-..
T Consensus 184 ~~~l~~-~v~~~L~~~~~~d~r 204 (235)
T PRK08084 184 GFELPE-DVGRFLLKRLDREMR 204 (235)
T ss_pred CCCCCH-HHHHHHHHhhcCCHH
Confidence 44433 347888888776443
No 222
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.17 E-value=5e-10 Score=127.03 Aligned_cols=188 Identities=17% Similarity=0.232 Sum_probs=124.2
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCe-----------
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 269 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~----------- 269 (764)
+..+-+|+|+.|.+..++.|+.++... ..+..+||+||+||||||+|+++|+.+++.
T Consensus 9 kyRP~~f~divGq~~v~~~L~~~~~~~------------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C 76 (509)
T PRK14958 9 KWRPRCFQEVIGQAPVVRALSNALDQQ------------YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDC 76 (509)
T ss_pred HHCCCCHHHhcCCHHHHHHHHHHHHhC------------CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCC
Confidence 456678999999999999998888641 123468999999999999999999998642
Q ss_pred -------------EEEEechhhhhhccchhHHHHHHHHHHHH----hcCCeEEEEccccccCCCCCCCchHHHHHHHHHH
Q 004267 270 -------------FFCINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 332 (764)
Q Consensus 270 -------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L 332 (764)
++.+++.. ...-..++.+.+.+. .....|++|||+|.+.+. ..+.|
T Consensus 77 ~~C~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~-----------a~naL 139 (509)
T PRK14958 77 ENCREIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGH-----------SFNAL 139 (509)
T ss_pred HHHHHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHH-----------HHHHH
Confidence 34444321 112334566665543 233469999999988522 34567
Q ss_pred HHHhhcccCCCeEEEEEecCCCCCCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCC-CchhhhHHhhhcCCCc
Q 004267 333 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYV 411 (764)
Q Consensus 333 l~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~~ 411 (764)
+..|+.... .+.+|.+|+++..+.+.+++ |+ ..+++..++..+-...++..+....+. ++..+..+++.+.| .
T Consensus 140 Lk~LEepp~--~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~G-s 213 (509)
T PRK14958 140 LKTLEEPPS--HVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANG-S 213 (509)
T ss_pred HHHHhccCC--CeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-c
Confidence 777776433 56666677788888877776 55 446777777766555555554433332 33456777777765 4
Q ss_pred hHHHHHHHHHHH
Q 004267 412 GADLAALCTEAA 423 (764)
Q Consensus 412 ~~dl~~l~~~a~ 423 (764)
..++..++..+.
T Consensus 214 lR~al~lLdq~i 225 (509)
T PRK14958 214 VRDALSLLDQSI 225 (509)
T ss_pred HHHHHHHHHHHH
Confidence 456666665443
No 223
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.17 E-value=8.4e-10 Score=123.34 Aligned_cols=188 Identities=23% Similarity=0.270 Sum_probs=129.2
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCC------------
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA------------ 268 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~------------ 268 (764)
+..+-+|+|+.|.+..++.++.++... ..+..+||+||+|+||||+|+.+|+.+++
T Consensus 6 KyRP~~f~dliGQe~vv~~L~~a~~~~------------ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C 73 (491)
T PRK14964 6 KYRPSSFKDLVGQDVLVRILRNAFTLN------------KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTC 73 (491)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCcccc
Confidence 345678999999999999998777641 23568999999999999999999987642
Q ss_pred ------------eEEEEechhhhhhccchhHHHHHHHHHHHHh----cCCeEEEEccccccCCCCCCCchHHHHHHHHHH
Q 004267 269 ------------FFFCINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 332 (764)
Q Consensus 269 ------------~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L 332 (764)
.++.+++.+- ..-..++.+.+.+.. ....+++|||+|.+.. ...+.|
T Consensus 74 ~~C~~i~~~~~~Dv~eidaas~------~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~-----------~A~NaL 136 (491)
T PRK14964 74 HNCISIKNSNHPDVIEIDAASN------TSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN-----------SAFNAL 136 (491)
T ss_pred HHHHHHhccCCCCEEEEecccC------CCHHHHHHHHHHHHhccccCCceEEEEeChHhCCH-----------HHHHHH
Confidence 2344444321 123457777766543 3346999999988742 234567
Q ss_pred HHHhhcccCCCeEEEEEecCCCCCCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCC-CCchhhhHHhhhcCCCc
Q 004267 333 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDDVDLERIAKDTHGYV 411 (764)
Q Consensus 333 l~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l-~~~~~l~~la~~t~g~~ 411 (764)
+..++... ..+.+|.+|+.++.+.+.+++ |+ ..+++..++.++....+...+..... .++..+..+++.+.| .
T Consensus 137 LK~LEePp--~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G-s 210 (491)
T PRK14964 137 LKTLEEPA--PHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG-S 210 (491)
T ss_pred HHHHhCCC--CCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 77777643 356666677788888888887 66 55788888888887777766554333 234457778888866 4
Q ss_pred hHHHHHHHHHHH
Q 004267 412 GADLAALCTEAA 423 (764)
Q Consensus 412 ~~dl~~l~~~a~ 423 (764)
..++..++..+.
T Consensus 211 lR~alslLdqli 222 (491)
T PRK14964 211 MRNALFLLEQAA 222 (491)
T ss_pred HHHHHHHHHHHH
Confidence 445555555443
No 224
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.16 E-value=7.6e-10 Score=126.62 Aligned_cols=188 Identities=19% Similarity=0.255 Sum_probs=126.5
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeE----------
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFF---------- 270 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~---------- 270 (764)
+..+-+|+||.|.+..++.|+.++... ..+..+||+||+||||||+|+++|+.+++.-
T Consensus 9 KYRP~tFddIIGQe~vv~~L~~ai~~~------------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C 76 (709)
T PRK08691 9 KWRPKTFADLVGQEHVVKALQNALDEG------------RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVC 76 (709)
T ss_pred HhCCCCHHHHcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCccc
Confidence 456778999999999999998887641 2345799999999999999999999876431
Q ss_pred --------------EEEechhhhhhccchhHHHHHHHHHHHHh----cCCeEEEEccccccCCCCCCCchHHHHHHHHHH
Q 004267 271 --------------FCINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 332 (764)
Q Consensus 271 --------------i~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L 332 (764)
+.+++. .......++.+++.+.. ....|+||||+|.+.. ...+.|
T Consensus 77 ~sCr~i~~g~~~DvlEidaA------s~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~-----------~A~NAL 139 (709)
T PRK08691 77 QSCTQIDAGRYVDLLEIDAA------SNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSK-----------SAFNAM 139 (709)
T ss_pred HHHHHHhccCccceEEEecc------ccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCH-----------HHHHHH
Confidence 122211 11223456777665432 3457999999987631 234567
Q ss_pred HHHhhcccCCCeEEEEEecCCCCCCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCC-CchhhhHHhhhcCCCc
Q 004267 333 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYV 411 (764)
Q Consensus 333 l~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~~ 411 (764)
+..|+... ..+.+|.+|+++..+.+.+++ |+ ..+.+..++.++-...|+..+....+. ++..+..+++.+.|-
T Consensus 140 LKtLEEPp--~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~Gs- 213 (709)
T PRK08691 140 LKTLEEPP--EHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGS- 213 (709)
T ss_pred HHHHHhCC--CCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCC-
Confidence 77777643 356667777888888888775 66 557778888888777777666544332 334577777777653
Q ss_pred hHHHHHHHHHHH
Q 004267 412 GADLAALCTEAA 423 (764)
Q Consensus 412 ~~dl~~l~~~a~ 423 (764)
.+++..++..+.
T Consensus 214 lRdAlnLLDqai 225 (709)
T PRK08691 214 MRDALSLLDQAI 225 (709)
T ss_pred HHHHHHHHHHHH
Confidence 455555554443
No 225
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.16 E-value=1.7e-10 Score=133.77 Aligned_cols=184 Identities=21% Similarity=0.306 Sum_probs=124.0
Q ss_pred CccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCe--------------
Q 004267 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 542 (764)
Q Consensus 477 ~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~-------------- 542 (764)
..+|+++.|++.+++.|...+.. + +.+..+||+||+|+|||++|+++|..+.+.
T Consensus 12 P~~~~eiiGq~~~~~~L~~~i~~-----------~-~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~ 79 (585)
T PRK14950 12 SQTFAELVGQEHVVQTLRNAIAE-----------G-RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEM 79 (585)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHh-----------C-CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHH
Confidence 35689999999999988765432 1 233458999999999999999999876421
Q ss_pred -----------eEEEecccchhcccCcchHHHHHHHHHHhh----CCCeEEEEecccchhhccCCCCCCCCcchHHHHHH
Q 004267 543 -----------FISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQ 607 (764)
Q Consensus 543 -----------~i~v~~~~l~~~~~g~se~~i~~~f~~a~~----~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~ 607 (764)
++.+++.. ..+-..++++.+.+.. ....|+||||+|.+. ....+.
T Consensus 80 c~~i~~~~~~d~~~i~~~~------~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~--------------~~a~na 139 (585)
T PRK14950 80 CRAIAEGSAVDVIEMDAAS------HTSVDDAREIIERVQFRPALARYKVYIIDEVHMLS--------------TAAFNA 139 (585)
T ss_pred HHHHhcCCCCeEEEEeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCC--------------HHHHHH
Confidence 12222211 1123345555544332 335699999999863 234678
Q ss_pred HHHhhcCCCCCCcEEEEecCCCCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCCC
Q 004267 608 LLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS-KDVDLRALAKYTQGF 686 (764)
Q Consensus 608 lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~~g~ 686 (764)
||..|+... ..+++|.+|+.++.+.+.+.+ |+. .+.|+.++..+...+++..+++.++. ++..+..++..+.|
T Consensus 140 LLk~LEepp--~~tv~Il~t~~~~kll~tI~S--R~~-~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G- 213 (585)
T PRK14950 140 LLKTLEEPP--PHAIFILATTEVHKVPATILS--RCQ-RFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG- 213 (585)
T ss_pred HHHHHhcCC--CCeEEEEEeCChhhhhHHHHh--ccc-eeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 888888653 345555566667777777776 775 78999999999999888887666543 22336677777765
Q ss_pred CHHHHHHHHHHH
Q 004267 687 SGADITEICQRA 698 (764)
Q Consensus 687 sg~di~~~~~~a 698 (764)
+.+++.+.++..
T Consensus 214 dlr~al~~LekL 225 (585)
T PRK14950 214 SMRDAENLLQQL 225 (585)
T ss_pred CHHHHHHHHHHH
Confidence 666666666543
No 226
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.16 E-value=8.8e-10 Score=126.37 Aligned_cols=181 Identities=21% Similarity=0.314 Sum_probs=116.9
Q ss_pred ccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhC----------CeEEEEechh
Q 004267 208 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG----------AFFFCINGPE 277 (764)
Q Consensus 208 ~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~----------~~~i~v~~~~ 277 (764)
+.|.|-++++++|..++.-.+. +-.++..++|+|+||||||++++.+..++. ..++.|||..
T Consensus 755 D~LPhREeEIeeLasfL~paIk--------gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~ 826 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIK--------QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN 826 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHh--------cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc
Confidence 5688888998888887764332 112334457999999999999999987661 4568899854
Q ss_pred hhhh----------cc------c-hhHHHHHHHHHHHHh--cCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhc
Q 004267 278 IMSK----------LA------G-ESESNLRKAFEEAEK--NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDG 338 (764)
Q Consensus 278 l~~~----------~~------g-~~~~~l~~vf~~a~~--~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~ 338 (764)
+... .. | .+...+..+|..... ....||+|||||.|..+. ..++-.|+.+..
T Consensus 827 Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~--------QDVLYnLFR~~~- 897 (1164)
T PTZ00112 827 VVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKT--------QKVLFTLFDWPT- 897 (1164)
T ss_pred cCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccH--------HHHHHHHHHHhh-
Confidence 3211 10 1 122345566665422 335699999999997542 223334444332
Q ss_pred ccCCCeEEEEEecCC---CCCCChhhhccCCcc-eEEEecCCChHHHHHHHHHHhcCCC-CCCchhhhHHhhhcC
Q 004267 339 LKSRAHVIVIGATNR---PNSIDPALRRFGRFD-REIDIGVPDEVGRLEVLRIHTKNMK-LSDDVDLERIAKDTH 408 (764)
Q Consensus 339 ~~~~~~v~vI~atn~---~~~ld~al~r~~rf~-~~i~i~~p~~~~R~~il~~~~~~~~-l~~~~~l~~la~~t~ 408 (764)
.....++|||++|. ++.+++.++. ||. .++.+++++.++..+||+..+.... ..++..++.+|+...
T Consensus 898 -~s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVA 969 (1164)
T PTZ00112 898 -KINSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVA 969 (1164)
T ss_pred -ccCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhh
Confidence 23457899999986 4456777776 443 3478899999999999998776432 233444666666433
No 227
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.16 E-value=1.5e-10 Score=128.84 Aligned_cols=193 Identities=23% Similarity=0.348 Sum_probs=142.7
Q ss_pred ccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCee-------EE-----
Q 004267 478 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANF-------IS----- 545 (764)
Q Consensus 478 v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~-------i~----- 545 (764)
-.|+++.|++.+.+.|...+... +...+.||.||.||||||+||.+|+.+++.- ..
T Consensus 13 ~~F~evvGQe~v~~~L~nal~~~------------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck 80 (515)
T COG2812 13 KTFDDVVGQEHVVKTLSNALENG------------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCK 80 (515)
T ss_pred ccHHHhcccHHHHHHHHHHHHhC------------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhH
Confidence 45899999999999998776531 3345699999999999999999999765431 10
Q ss_pred -Ee-c--ccch--hcccCcchHHHHHHHHHHhhC----CCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCC
Q 004267 546 -VK-G--PELL--TMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGM 615 (764)
Q Consensus 546 -v~-~--~~l~--~~~~g~se~~i~~~f~~a~~~----~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~ 615 (764)
+. | .|++ +.-...+-..+|++-+++... .+.|.+|||++.|- ....|.||..++.
T Consensus 81 ~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS--------------~~afNALLKTLEE- 145 (515)
T COG2812 81 EINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS--------------KQAFNALLKTLEE- 145 (515)
T ss_pred hhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh--------------HHHHHHHhccccc-
Confidence 00 0 1111 000112345688888887643 46799999999873 4568999999885
Q ss_pred CCCCcEEEEecCCCCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCCCccc-HHHHHHHCCCCCHHHHHHH
Q 004267 616 SAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVD-LRALAKYTQGFSGADITEI 694 (764)
Q Consensus 616 ~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~-l~~la~~~~g~sg~di~~~ 694 (764)
+...|++|.||..++.+.+-+++ |+. .+.|...+.++...-++..+.+..+.-+.+ +..+|+..+| |.+|...+
T Consensus 146 -PP~hV~FIlATTe~~Kip~TIlS--Rcq-~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RDalsl 220 (515)
T COG2812 146 -PPSHVKFILATTEPQKIPNTILS--RCQ-RFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRDALSL 220 (515)
T ss_pred -CccCeEEEEecCCcCcCchhhhh--ccc-cccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-ChhhHHHH
Confidence 55688889999999999999997 775 778999999999999999998887765544 5667777665 77888888
Q ss_pred HHHHHHHH
Q 004267 695 CQRACKYA 702 (764)
Q Consensus 695 ~~~a~~~a 702 (764)
+..|....
T Consensus 221 LDq~i~~~ 228 (515)
T COG2812 221 LDQAIAFG 228 (515)
T ss_pred HHHHHHcc
Confidence 88777664
No 228
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.16 E-value=5.2e-10 Score=126.82 Aligned_cols=158 Identities=19% Similarity=0.316 Sum_probs=105.5
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh-----CCeEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEEccccccCCCC
Q 004267 243 KGILLYGPPGSGKTLIARAVANET-----GAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKR 317 (764)
Q Consensus 243 ~~vLL~GppGtGKTtLar~la~~l-----~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~ 317 (764)
..++|||++|||||+|+++|++++ +..++.+++.++...+...........|.+-. ..+++|+||||+++..+.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y-~~~DLLlIDDIq~l~gke 393 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRY-REMDILLVDDIQFLEDKE 393 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHh-hcCCEEEEehhccccCCH
Confidence 359999999999999999999986 45678888888776554433222222344322 246899999999986542
Q ss_pred CCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCC---CCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCC
Q 004267 318 EKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPN---SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL 394 (764)
Q Consensus 318 ~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~---~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l 394 (764)
. ....|+.+++.+...+.-+||.+...|. .+++.|++.......+.+..|+.+.|.+||+.++....+
T Consensus 394 ~---------tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~l 464 (617)
T PRK14086 394 S---------TQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQL 464 (617)
T ss_pred H---------HHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcCC
Confidence 1 1244556666655544445554444443 567888883333566789999999999999988764433
Q ss_pred C-CchhhhHHhhhcCCC
Q 004267 395 S-DDVDLERIAKDTHGY 410 (764)
Q Consensus 395 ~-~~~~l~~la~~t~g~ 410 (764)
. .+..++.|+.+..+-
T Consensus 465 ~l~~eVi~yLa~r~~rn 481 (617)
T PRK14086 465 NAPPEVLEFIASRISRN 481 (617)
T ss_pred CCCHHHHHHHHHhccCC
Confidence 2 233477788776653
No 229
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.15 E-value=4.6e-10 Score=130.01 Aligned_cols=184 Identities=19% Similarity=0.300 Sum_probs=130.2
Q ss_pred ccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhC-----------------
Q 004267 478 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ----------------- 540 (764)
Q Consensus 478 v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~----------------- 540 (764)
.+|++|.|++.+++.|...+.. | ..+..+|||||+|+|||++|+++|..+.
T Consensus 14 ~~f~~viGq~~~~~~L~~~i~~-----------~-~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC 81 (614)
T PRK14971 14 STFESVVGQEALTTTLKNAIAT-----------N-KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESC 81 (614)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-----------C-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHH
Confidence 5689999999999888766542 1 2345599999999999999999999764
Q ss_pred --------CeeEEEecccchhcccCcchHHHHHHHHHHhhCC----CeEEEEecccchhhccCCCCCCCCcchHHHHHHH
Q 004267 541 --------ANFISVKGPELLTMWFGESEANVREIFDKARQSA----PCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 608 (764)
Q Consensus 541 --------~~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~~----p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~l 608 (764)
.+++.+++.+- .+...++.+.+.+...+ ..|++|||++.+. ....+.|
T Consensus 82 ~~~~~~~~~n~~~ld~~~~------~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls--------------~~a~naL 141 (614)
T PRK14971 82 VAFNEQRSYNIHELDAASN------NSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS--------------QAAFNAF 141 (614)
T ss_pred HHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhCcccCCcEEEEEECcccCC--------------HHHHHHH
Confidence 23444443211 12456777776664433 4699999999873 2356788
Q ss_pred HHhhcCCCCCCcEEEEecCCCCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCCCc-ccHHHHHHHCCCCC
Q 004267 609 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKD-VDLRALAKYTQGFS 687 (764)
Q Consensus 609 L~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~-~~l~~la~~~~g~s 687 (764)
|..|+..+ ...++|++|+.+..|-+++++ |+. ++.|.+++.++....++..+++.++.-+ ..+..|+..+.| +
T Consensus 142 LK~LEepp--~~tifIL~tt~~~kIl~tI~S--Rc~-iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~g-d 215 (614)
T PRK14971 142 LKTLEEPP--SYAIFILATTEKHKILPTILS--RCQ-IFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADG-G 215 (614)
T ss_pred HHHHhCCC--CCeEEEEEeCCchhchHHHHh--hhh-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 88888643 345555666667788888887 875 7999999999998999888877666533 346778877754 6
Q ss_pred HHHHHHHHHHHH
Q 004267 688 GADITEICQRAC 699 (764)
Q Consensus 688 g~di~~~~~~a~ 699 (764)
.+++.+.+....
T Consensus 216 lr~al~~Lekl~ 227 (614)
T PRK14971 216 MRDALSIFDQVV 227 (614)
T ss_pred HHHHHHHHHHHH
Confidence 666666665543
No 230
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.15 E-value=7.9e-10 Score=125.95 Aligned_cols=178 Identities=20% Similarity=0.238 Sum_probs=119.8
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCe-----------
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 269 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~----------- 269 (764)
+..+.+|++|.|.+..++.|+.++... .-+..+||+||+||||||+|+.+|+.+.+.
T Consensus 9 KyRP~sf~dIiGQe~v~~~L~~ai~~~------------ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C 76 (624)
T PRK14959 9 RYRPQTFAEVAGQETVKAILSRAAQEN------------RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTC 76 (624)
T ss_pred HhCCCCHHHhcCCHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCccc
Confidence 456778999999999999998888641 113479999999999999999999998642
Q ss_pred -------------EEEEechhhhhhccchhHHHHHHHHHH----HHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHH
Q 004267 270 -------------FFCINGPEIMSKLAGESESNLRKAFEE----AEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 332 (764)
Q Consensus 270 -------------~i~v~~~~l~~~~~g~~~~~l~~vf~~----a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L 332 (764)
++.+++..- ..-..++.+.+. .......|+||||+|.+.. ...+.|
T Consensus 77 ~sC~~i~~g~hpDv~eId~a~~------~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~-----------~a~naL 139 (624)
T PRK14959 77 EQCRKVTQGMHVDVVEIDGASN------RGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTR-----------EAFNAL 139 (624)
T ss_pred HHHHHHhcCCCCceEEEecccc------cCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCH-----------HHHHHH
Confidence 333433210 011233333222 2234457999999998842 234667
Q ss_pred HHHhhcccCCCeEEEEEecCCCCCCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCC-CCchhhhHHhhhcCCCc
Q 004267 333 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDDVDLERIAKDTHGYV 411 (764)
Q Consensus 333 l~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l-~~~~~l~~la~~t~g~~ 411 (764)
+..|+... ..+++|.+|+.+..+.+.+++ |+ ..+.+..++.++-..+|+..+....+ .++..+..++..+.|-.
T Consensus 140 Lk~LEEP~--~~~ifILaTt~~~kll~TI~S--Rc-q~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~Gdl 214 (624)
T PRK14959 140 LKTLEEPP--ARVTFVLATTEPHKFPVTIVS--RC-QHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSV 214 (624)
T ss_pred HHHhhccC--CCEEEEEecCChhhhhHHHHh--hh-hccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 77776533 367777788888888888776 65 46789999888888777765544333 23345777777776644
Q ss_pred h
Q 004267 412 G 412 (764)
Q Consensus 412 ~ 412 (764)
.
T Consensus 215 R 215 (624)
T PRK14959 215 R 215 (624)
T ss_pred H
Confidence 3
No 231
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.15 E-value=1.5e-10 Score=117.46 Aligned_cols=168 Identities=21% Similarity=0.385 Sum_probs=106.8
Q ss_pred ceeeeCCCCCChhHHHHHHHHHh-----CCeeEEEecccchhcccCcch-HHHHHHHHHHhhCCCeEEEEecccchhhcc
Q 004267 517 GVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLTMWFGESE-ANVREIFDKARQSAPCVLFFDELDSIATQR 590 (764)
Q Consensus 517 gill~GppGtGKT~lak~lA~~~-----~~~~i~v~~~~l~~~~~g~se-~~i~~~f~~a~~~~p~iifiDEid~l~~~r 590 (764)
.++||||+|+|||+|.++++++. +...+.+++.++...+..... ..+..+.+..+ ...+++||+++.+.++
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~--~~DlL~iDDi~~l~~~- 112 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLR--SADLLIIDDIQFLAGK- 112 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHC--TSSEEEEETGGGGTTH-
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhh--cCCEEEEecchhhcCc-
Confidence 48999999999999999999863 567888888887765443221 12223333333 3369999999998653
Q ss_pred CCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCCCC---CccCCCCCccc--eEEeecCCCHHHHHHHHHHHh
Q 004267 591 GSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDII---DPALLRPGRLD--QLIYIPLPDEDSRHQIFKACL 665 (764)
Q Consensus 591 ~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~l---d~allrpgRf~--~~i~~~~p~~~~r~~Il~~~~ 665 (764)
.+....|...++.+...++.+|+++...|..+ ++.+.+ ||. ..+.+.+||.+.|.+|++...
T Consensus 113 -----------~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a 179 (219)
T PF00308_consen 113 -----------QRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKA 179 (219)
T ss_dssp -----------HHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHH
T ss_pred -----------hHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHH
Confidence 22333444444444345556677776677655 455555 776 488889999999999999999
Q ss_pred ccCCCCCccc-HHHHHHHCCCCCHHHHHHHHHHHHHH
Q 004267 666 RKSPVSKDVD-LRALAKYTQGFSGADITEICQRACKY 701 (764)
Q Consensus 666 ~~~~~~~~~~-l~~la~~~~g~sg~di~~~~~~a~~~ 701 (764)
...++.-+.+ ++.|++... -+.++|..++..-...
T Consensus 180 ~~~~~~l~~~v~~~l~~~~~-~~~r~L~~~l~~l~~~ 215 (219)
T PF00308_consen 180 KERGIELPEEVIEYLARRFR-RDVRELEGALNRLDAY 215 (219)
T ss_dssp HHTT--S-HHHHHHHHHHTT-SSHHHHHHHHHHHHHH
T ss_pred HHhCCCCcHHHHHHHHHhhc-CCHHHHHHHHHHHHHH
Confidence 7776664444 456666654 4788888887765544
No 232
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.15 E-value=1.2e-09 Score=112.80 Aligned_cols=82 Identities=24% Similarity=0.203 Sum_probs=59.2
Q ss_pred EEEecCCC------------CCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCCCc-ccHHHHHHHCCCCCH
Q 004267 622 FIIGATNR------------PDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKD-VDLRALAKYTQGFSG 688 (764)
Q Consensus 622 ~vi~aTn~------------~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~-~~l~~la~~~~g~sg 688 (764)
+||+|||| |+-|+..||. |+ .+|...+++.++.++|++...+...+.-+ .-++.|+.....-|=
T Consensus 322 Iii~AtNRG~~kiRGTd~~sPhGIP~DlLD--Rl-lII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSL 398 (450)
T COG1224 322 IIILATNRGMTKIRGTDIESPHGIPLDLLD--RL-LIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSL 398 (450)
T ss_pred EEEEEcCCceeeecccCCcCCCCCCHhhhh--he-eEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhH
Confidence 78888887 5566666665 65 36777789999999999999977665533 346777777665566
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004267 689 ADITEICQRACKYAIREN 706 (764)
Q Consensus 689 ~di~~~~~~a~~~a~~~~ 706 (764)
+-..+++.-|...|.++.
T Consensus 399 RYa~qLL~pa~iiA~~rg 416 (450)
T COG1224 399 RYAVQLLTPASIIAKRRG 416 (450)
T ss_pred HHHHHhccHHHHHHHHhC
Confidence 666677777777776664
No 233
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.14 E-value=4.5e-10 Score=111.66 Aligned_cols=143 Identities=22% Similarity=0.306 Sum_probs=98.3
Q ss_pred CCcceeeeCCCCCChhHHHHHHHHHhCCe------------------------eEEEecccchhcccCcchHHHHHHHHH
Q 004267 514 PSKGVLFYGPPGCGKTLLAKAIANECQAN------------------------FISVKGPELLTMWFGESEANVREIFDK 569 (764)
Q Consensus 514 ~~~gill~GppGtGKT~lak~lA~~~~~~------------------------~i~v~~~~l~~~~~g~se~~i~~~f~~ 569 (764)
.+..+||+||+|+|||++|+.++..+... +..+.... . .-+...++.+.+.
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~--~~~~~~i~~i~~~ 87 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---Q--SIKVDQVRELVEF 87 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---C--cCCHHHHHHHHHH
Confidence 44569999999999999999999985321 22221110 0 0123566666766
Q ss_pred Hhh----CCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCCCCCccCCCCCccce
Q 004267 570 ARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQ 645 (764)
Q Consensus 570 a~~----~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~ 645 (764)
+.. ....|+|+||+|.+.. ...+.||..|+... ...++|.+||.++.+.+++.+ |+.
T Consensus 88 ~~~~~~~~~~kviiide~~~l~~--------------~~~~~Ll~~le~~~--~~~~~il~~~~~~~l~~~i~s--r~~- 148 (188)
T TIGR00678 88 LSRTPQESGRRVVIIEDAERMNE--------------AAANALLKTLEEPP--PNTLFILITPSPEKLLPTIRS--RCQ- 148 (188)
T ss_pred HccCcccCCeEEEEEechhhhCH--------------HHHHHHHHHhcCCC--CCeEEEEEECChHhChHHHHh--hcE-
Confidence 654 3457999999998743 34577888888733 345555666777899999987 774
Q ss_pred EEeecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCC
Q 004267 646 LIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQG 685 (764)
Q Consensus 646 ~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g 685 (764)
.+.|++|+.++..++++.. +++ +..+..++..+.|
T Consensus 149 ~~~~~~~~~~~~~~~l~~~----gi~-~~~~~~i~~~~~g 183 (188)
T TIGR00678 149 VLPFPPLSEEALLQWLIRQ----GIS-EEAAELLLALAGG 183 (188)
T ss_pred EeeCCCCCHHHHHHHHHHc----CCC-HHHHHHHHHHcCC
Confidence 8999999999998888776 233 3346666666654
No 234
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.14 E-value=2.3e-09 Score=108.86 Aligned_cols=155 Identities=24% Similarity=0.467 Sum_probs=98.3
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh-----CCeEEEEechhhhhhccchhHH-HHHHHHHHHHhcCCeEEEEccccccCCC
Q 004267 243 KGILLYGPPGSGKTLIARAVANET-----GAFFFCINGPEIMSKLAGESES-NLRKAFEEAEKNAPSIIFIDEIDSIAPK 316 (764)
Q Consensus 243 ~~vLL~GppGtGKTtLar~la~~l-----~~~~i~v~~~~l~~~~~g~~~~-~l~~vf~~a~~~~p~il~iDEid~l~~~ 316 (764)
..++||||+|+|||+|+++++++. +..++.+++.++...+...... .+.. |..-. ....+|+||+++.+..+
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~-~~~~~-~~~DlL~iDDi~~l~~~ 112 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEE-FKDRL-RSADLLIIDDIQFLAGK 112 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHH-HHHHH-CTSSEEEEETGGGGTTH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchh-hhhhh-hcCCEEEEecchhhcCc
Confidence 469999999999999999999875 4567888887776544322211 1112 22222 24579999999988532
Q ss_pred CCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCC---ChhhhccCCcceEEEecCCChHHHHHHHHHHhcCC-
Q 004267 317 REKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI---DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNM- 392 (764)
Q Consensus 317 ~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~l---d~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~- 392 (764)
.+....|..+++.+...++.+|+++...|..+ ++.|++...-...+.+..|+.+.|.+|++..+...
T Consensus 113 ---------~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~ 183 (219)
T PF00308_consen 113 ---------QRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERG 183 (219)
T ss_dssp ---------HHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT
T ss_pred ---------hHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhC
Confidence 23446777777777777777777776666654 67777622233578999999999999999776543
Q ss_pred -CCCCchhhhHHhhhcCC
Q 004267 393 -KLSDDVDLERIAKDTHG 409 (764)
Q Consensus 393 -~l~~~~~l~~la~~t~g 409 (764)
.+.++ -++.+++...+
T Consensus 184 ~~l~~~-v~~~l~~~~~~ 200 (219)
T PF00308_consen 184 IELPEE-VIEYLARRFRR 200 (219)
T ss_dssp --S-HH-HHHHHHHHTTS
T ss_pred CCCcHH-HHHHHHHhhcC
Confidence 33333 46667776554
No 235
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.14 E-value=1.4e-09 Score=129.10 Aligned_cols=175 Identities=19% Similarity=0.229 Sum_probs=118.1
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCe-----------
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 269 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~----------- 269 (764)
++.+.+|++|.|.+..++.|+.++... ..+..+||+||+||||||+++.||+.+++.
T Consensus 8 KyRP~~f~eiiGqe~v~~~L~~~i~~~------------ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C 75 (824)
T PRK07764 8 RYRPATFAEVIGQEHVTEPLSTALDSG------------RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGEC 75 (824)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCccc
Confidence 456778999999999999998887641 123458999999999999999999998642
Q ss_pred ---------------EEEEechhhhhhccchhHHHHHHHHHH----HHhcCCeEEEEccccccCCCCCCCchHHHHHHHH
Q 004267 270 ---------------FFCINGPEIMSKLAGESESNLRKAFEE----AEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVS 330 (764)
Q Consensus 270 ---------------~i~v~~~~l~~~~~g~~~~~l~~vf~~----a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~ 330 (764)
++.+++... ..-..++.+.+. .......|+||||+|.|.. ...+
T Consensus 76 ~sC~~~~~g~~~~~dv~eidaas~------~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~-----------~a~N 138 (824)
T PRK07764 76 DSCVALAPGGPGSLDVTEIDAASH------GGVDDARELRERAFFAPAESRYKIFIIDEAHMVTP-----------QGFN 138 (824)
T ss_pred HHHHHHHcCCCCCCcEEEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEechhhcCH-----------HHHH
Confidence 222222110 012334444333 2334557999999998842 2346
Q ss_pred HHHHHhhcccCCCeEEEEEecCCCCCCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCC-CchhhhHHhhhcCC
Q 004267 331 QLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHG 409 (764)
Q Consensus 331 ~Ll~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g 409 (764)
.|++.|+.... .+++|.+|+.++.|-+.+++ |. ..++|..+..+.-.++|+..++...+. ++..+..+++...|
T Consensus 139 aLLK~LEEpP~--~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgG 213 (824)
T PRK07764 139 ALLKIVEEPPE--HLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGG 213 (824)
T ss_pred HHHHHHhCCCC--CeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 68888877543 56666677777888888887 55 567888888888777777666543332 33345666666665
No 236
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.14 E-value=8.3e-10 Score=115.50 Aligned_cols=133 Identities=25% Similarity=0.294 Sum_probs=91.2
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechh------hhhhccchhHHHH---------------------HHH
Q 004267 241 PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPE------IMSKLAGESESNL---------------------RKA 293 (764)
Q Consensus 241 ~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~------l~~~~~g~~~~~l---------------------~~v 293 (764)
.+.+++|.||||||||++|+++|..++.+++.+++.. +++.+.+.....+ +.+
T Consensus 20 ~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l 99 (262)
T TIGR02640 20 SGYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRL 99 (262)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchH
Confidence 3568999999999999999999999999999887743 3333322111110 112
Q ss_pred HHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhccc--------------CCCeEEEEEecCCCC----
Q 004267 294 FEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK--------------SRAHVIVIGATNRPN---- 355 (764)
Q Consensus 294 f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~--------------~~~~v~vI~atn~~~---- 355 (764)
+. |.. ...++++||++.+-+ .+...|+..|+.-. ..+++.||+|+|...
T Consensus 100 ~~-A~~-~g~~lllDEi~r~~~-----------~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~ 166 (262)
T TIGR02640 100 TL-AVR-EGFTLVYDEFTRSKP-----------ETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGV 166 (262)
T ss_pred HH-HHH-cCCEEEEcchhhCCH-----------HHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccce
Confidence 22 222 346999999997532 23455666664311 223677899999752
Q ss_pred -CCChhhhccCCcceEEEecCCChHHHHHHHHHHh
Q 004267 356 -SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHT 389 (764)
Q Consensus 356 -~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~ 389 (764)
.+++++.+ || ..+.++.|+.+.-.+|++.+.
T Consensus 167 ~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 167 HETQDALLD--RL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred ecccHHHHh--hc-EEEECCCCCHHHHHHHHHHhh
Confidence 56888887 88 678999999999999998764
No 237
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.13 E-value=2.2e-09 Score=122.90 Aligned_cols=186 Identities=17% Similarity=0.236 Sum_probs=121.5
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCe-----------
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 269 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~----------- 269 (764)
+..+-+|++|.|.+..++.|+.++... ..+..+||+||+||||||+|+++|+.+++.
T Consensus 6 kyRP~~f~eivGq~~i~~~L~~~i~~~------------r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C 73 (584)
T PRK14952 6 KYRPATFAEVVGQEHVTEPLSSALDAG------------RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVC 73 (584)
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCccccc
Confidence 456678999999999999998888641 123458999999999999999999987642
Q ss_pred ---------------EEEEechhhhhhccchhHHHHHHHHHHHH----hcCCeEEEEccccccCCCCCCCchHHHHHHHH
Q 004267 270 ---------------FFCINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVS 330 (764)
Q Consensus 270 ---------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~ 330 (764)
++.+++... ..-..++.+.+.+. .....|++|||+|.+.. ...+
T Consensus 74 ~~C~~i~~~~~~~~dvieidaas~------~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~-----------~A~N 136 (584)
T PRK14952 74 ESCVALAPNGPGSIDVVELDAASH------GGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTT-----------AGFN 136 (584)
T ss_pred HHHHHhhcccCCCceEEEeccccc------cCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCH-----------HHHH
Confidence 222222110 01233444444332 23456999999998842 1346
Q ss_pred HHHHHhhcccCCCeEEEEEecCCCCCCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCC-CchhhhHHhhhcCC
Q 004267 331 QLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHG 409 (764)
Q Consensus 331 ~Ll~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g 409 (764)
.|+..|+... ..+++|.+|+.++.+.+.+++ |. ..++|..++.++-.+.+...+...... ++..+..++..+.|
T Consensus 137 ALLK~LEEpp--~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~G 211 (584)
T PRK14952 137 ALLKIVEEPP--EHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGG 211 (584)
T ss_pred HHHHHHhcCC--CCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 6777777643 366777777888889888887 54 568888888887777777665544332 33345556555544
Q ss_pred CchHHHHHHHHH
Q 004267 410 YVGADLAALCTE 421 (764)
Q Consensus 410 ~~~~dl~~l~~~ 421 (764)
..++...++..
T Consensus 212 -dlR~aln~Ldq 222 (584)
T PRK14952 212 -SPRDTLSVLDQ 222 (584)
T ss_pred -CHHHHHHHHHH
Confidence 33344444443
No 238
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.13 E-value=8.1e-10 Score=123.37 Aligned_cols=157 Identities=20% Similarity=0.365 Sum_probs=101.8
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh---CCeEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCC
Q 004267 243 KGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREK 319 (764)
Q Consensus 243 ~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~ 319 (764)
.+++||||+|+|||+|++++++++ +..++.++..++...+.......-...|.... ..+++|+|||++++..+..
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~~- 219 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKGA- 219 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCChh-
Confidence 579999999999999999999876 56778888776654332211111112233322 3467999999998864321
Q ss_pred CchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCC---CCChhhhccCCcc--eEEEecCCChHHHHHHHHHHhcCCCC
Q 004267 320 THGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPN---SIDPALRRFGRFD--REIDIGVPDEVGRLEVLRIHTKNMKL 394 (764)
Q Consensus 320 ~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~---~ld~al~r~~rf~--~~i~i~~p~~~~R~~il~~~~~~~~l 394 (764)
....+...++.+...+..+|++++..|. .+++.+++ ||. ..+.+..|+.+.|..|++..+....+
T Consensus 220 --------~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~ 289 (445)
T PRK12422 220 --------TQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEALSI 289 (445)
T ss_pred --------hHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHcCC
Confidence 1233444444443344556666655554 45678877 774 77889999999999999987765443
Q ss_pred C-CchhhhHHhhhcCCCc
Q 004267 395 S-DDVDLERIAKDTHGYV 411 (764)
Q Consensus 395 ~-~~~~l~~la~~t~g~~ 411 (764)
. ++..++.++....+-.
T Consensus 290 ~l~~evl~~la~~~~~di 307 (445)
T PRK12422 290 RIEETALDFLIEALSSNV 307 (445)
T ss_pred CCCHHHHHHHHHhcCCCH
Confidence 2 3334677777666543
No 239
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.11 E-value=2.9e-09 Score=120.73 Aligned_cols=185 Identities=18% Similarity=0.254 Sum_probs=120.6
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCC------------
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA------------ 268 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~------------ 268 (764)
+..+-+|+++.|.+..++.+...+... ..+..+||+||+|+||||+|+.+|+.+.+
T Consensus 9 KyRP~~f~diiGq~~~v~~L~~~i~~~------------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C 76 (546)
T PRK14957 9 KYRPQSFAEVAGQQHALNSLVHALETQ------------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKC 76 (546)
T ss_pred HHCcCcHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCccc
Confidence 346678999999999999988887641 12345899999999999999999998764
Q ss_pred ------------eEEEEechhhhhhccchhHHHHHHHHHHHH----hcCCeEEEEccccccCCCCCCCchHHHHHHHHHH
Q 004267 269 ------------FFFCINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 332 (764)
Q Consensus 269 ------------~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L 332 (764)
.++.+++..- ..-..++.+++.+. .....|+||||+|.+.. ...+.|
T Consensus 77 ~sC~~i~~~~~~dlieidaas~------~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~-----------~a~naL 139 (546)
T PRK14957 77 ENCVAINNNSFIDLIEIDAASR------TGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSK-----------QSFNAL 139 (546)
T ss_pred HHHHHHhcCCCCceEEeecccc------cCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccH-----------HHHHHH
Confidence 1233332110 11223455554443 23456999999987742 234567
Q ss_pred HHHhhcccCCCeEEEEEecCCCCCCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCC-CchhhhHHhhhcCCCc
Q 004267 333 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYV 411 (764)
Q Consensus 333 l~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~~ 411 (764)
+..|+... ..+.+|.+|+++..+.+.+++ |. ..+++..++.++-...++..++...+. ++..+..++..+.|-
T Consensus 140 LK~LEepp--~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~Gd- 213 (546)
T PRK14957 140 LKTLEEPP--EYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGS- 213 (546)
T ss_pred HHHHhcCC--CCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-
Confidence 77777543 356666667778888877776 66 678999998888776666555443332 334567777777653
Q ss_pred hHHHHHHHH
Q 004267 412 GADLAALCT 420 (764)
Q Consensus 412 ~~dl~~l~~ 420 (764)
.+++..++.
T Consensus 214 lR~alnlLe 222 (546)
T PRK14957 214 LRDALSLLD 222 (546)
T ss_pred HHHHHHHHH
Confidence 333333333
No 240
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.11 E-value=3.2e-10 Score=105.88 Aligned_cols=126 Identities=34% Similarity=0.475 Sum_probs=84.0
Q ss_pred cceeeeCCCCCChhHHHHHHHHHhCCe---eEEEecccchhc--------------ccCcchHHHHHHHHHHhhCCCeEE
Q 004267 516 KGVLFYGPPGCGKTLLAKAIANECQAN---FISVKGPELLTM--------------WFGESEANVREIFDKARQSAPCVL 578 (764)
Q Consensus 516 ~gill~GppGtGKT~lak~lA~~~~~~---~i~v~~~~l~~~--------------~~g~se~~i~~~f~~a~~~~p~ii 578 (764)
..++|+||||||||++++.+|..+... ++.+++...... .........+.+++.++...+.++
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 82 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVL 82 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 469999999999999999999998765 777777654321 223456678899999998888999
Q ss_pred EEecccchhhccCCCCCCCCcchHHHHHHH--HHhhcCCCCCCcEEEEecCCCCCCCCccCCCCCccceEEeecCC
Q 004267 579 FFDELDSIATQRGSSVGDAGGAADRVLNQL--LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLP 652 (764)
Q Consensus 579 fiDEid~l~~~r~~~~~~~~~~~~~~~~~l--L~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p 652 (764)
|+||++.+..... ....... ...........+..+|+++|......+..+++ |++..+.++.+
T Consensus 83 iiDei~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 147 (148)
T smart00382 83 ILDEITSLLDAEQ----------EALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR-RFDRRIVLLLI 147 (148)
T ss_pred EEECCcccCCHHH----------HHHHHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh-ccceEEEecCC
Confidence 9999999865321 0110000 00011111344567888888733444444444 99999988765
No 241
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.11 E-value=4.3e-10 Score=121.84 Aligned_cols=133 Identities=28% Similarity=0.432 Sum_probs=91.9
Q ss_pred CCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccchh--cccCcchHHH------------HHHHHHHhhCCCeEEE
Q 004267 514 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT--MWFGESEANV------------REIFDKARQSAPCVLF 579 (764)
Q Consensus 514 ~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~~--~~~g~se~~i------------~~~f~~a~~~~p~iif 579 (764)
...++||.||||||||++|+.+|..++.+|+.+.+..-+. .-+|...-.. +-+|...+ +++|
T Consensus 42 ~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~----~ill 117 (329)
T COG0714 42 AGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVR----VILL 117 (329)
T ss_pred cCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccc----eEEE
Confidence 4466999999999999999999999999999998754321 1122211111 11222221 4999
Q ss_pred EecccchhhccCCCCCCCCcchHHHHHHHHHhhcC----------CCCCCcEEEEecCC-----CCCCCCccCCCCCccc
Q 004267 580 FDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDG----------MSAKKTVFIIGATN-----RPDIIDPALLRPGRLD 644 (764)
Q Consensus 580 iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~----------~~~~~~v~vi~aTn-----~~~~ld~allrpgRf~ 644 (764)
+|||+.. ...+.+.||..|+. +.-....+||+|+| .-..+.+|+++ ||.
T Consensus 118 ~DEInra--------------~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~ 181 (329)
T COG0714 118 LDEINRA--------------PPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFL 181 (329)
T ss_pred EeccccC--------------CHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEE
Confidence 9999873 24566777777765 22346788999999 44578899998 999
Q ss_pred eEEeecCC-CHHHHHHHHHHHhc
Q 004267 645 QLIYIPLP-DEDSRHQIFKACLR 666 (764)
Q Consensus 645 ~~i~~~~p-~~~~r~~Il~~~~~ 666 (764)
..++++.| +.++...++.....
T Consensus 182 ~~~~v~yp~~~~e~~~i~~~~~~ 204 (329)
T COG0714 182 LRIYVDYPDSEEEERIILARVGG 204 (329)
T ss_pred EEEecCCCCchHHHHHHHHhCcc
Confidence 99999999 45555555554443
No 242
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.11 E-value=1.4e-09 Score=123.28 Aligned_cols=176 Identities=18% Similarity=0.252 Sum_probs=119.9
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCe-----------
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 269 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~----------- 269 (764)
...+-+|+++.|.+..++.+..++... ..+..+||+||+|+||||+|+++|..+.+.
T Consensus 9 KyRP~~F~dIIGQe~iv~~L~~aI~~~------------rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C 76 (605)
T PRK05896 9 KYRPHNFKQIIGQELIKKILVNAILNN------------KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSC 76 (605)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCccc
Confidence 456778999999999999998877531 224579999999999999999999987531
Q ss_pred -------------EEEEechhhhhhccchhHHHHHHHHHHHHh----cCCeEEEEccccccCCCCCCCchHHHHHHHHHH
Q 004267 270 -------------FFCINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 332 (764)
Q Consensus 270 -------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L 332 (764)
++.+++.. ...-..++.+...+.. ....+++|||+|.+.. ...+.|
T Consensus 77 ~sCr~i~~~~h~DiieIdaas------~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~-----------~A~NaL 139 (605)
T PRK05896 77 SVCESINTNQSVDIVELDAAS------NNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLST-----------SAWNAL 139 (605)
T ss_pred HHHHHHHcCCCCceEEecccc------ccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCH-----------HHHHHH
Confidence 22232211 0122346666655443 2346999999998742 133567
Q ss_pred HHHhhcccCCCeEEEEEecCCCCCCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCC-CCchhhhHHhhhcCCC
Q 004267 333 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDDVDLERIAKDTHGY 410 (764)
Q Consensus 333 l~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l-~~~~~l~~la~~t~g~ 410 (764)
+..|+... ..+++|.+|+.+..+.+.+++ |+ ..+++..++..+....+...+..... .++..+..++..+.|-
T Consensus 140 LKtLEEPp--~~tvfIL~Tt~~~KLl~TI~S--Rc-q~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~Gd 213 (605)
T PRK05896 140 LKTLEEPP--KHVVFIFATTEFQKIPLTIIS--RC-QRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGS 213 (605)
T ss_pred HHHHHhCC--CcEEEEEECCChHhhhHHHHh--hh-hhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCc
Confidence 77777643 356677777888899988887 65 46889999988887777765543332 2233467777777663
No 243
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.11 E-value=3.8e-09 Score=108.36 Aligned_cols=178 Identities=16% Similarity=0.291 Sum_probs=107.2
Q ss_pred CCCcccc--cChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCeEEEEechhh
Q 004267 204 EVGYDDV--GGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEI 278 (764)
Q Consensus 204 ~~~~~~i--~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l 278 (764)
+.+|++. |+.+..+..++++.. +.....+++|+||+|||||+|+++++... +..++.+++.++
T Consensus 14 ~~~~d~f~~~~~~~~~~~l~~~~~------------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~ 81 (227)
T PRK08903 14 PPTFDNFVAGENAELVARLRELAA------------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASP 81 (227)
T ss_pred hhhhcccccCCcHHHHHHHHHHHh------------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHh
Confidence 3455553 344555566666543 12346789999999999999999999875 556777777654
Q ss_pred hhhccchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeE-EEEEecCCCC--
Q 004267 279 MSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHV-IVIGATNRPN-- 355 (764)
Q Consensus 279 ~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v-~vI~atn~~~-- 355 (764)
... +. ......+++|||++.+.+. ....|...++........ ++++++..+.
T Consensus 82 ~~~------------~~--~~~~~~~liiDdi~~l~~~-----------~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~ 136 (227)
T PRK08903 82 LLA------------FD--FDPEAELYAVDDVERLDDA-----------QQIALFNLFNRVRAHGQGALLVAGPAAPLAL 136 (227)
T ss_pred HHH------------Hh--hcccCCEEEEeChhhcCch-----------HHHHHHHHHHHHHHcCCcEEEEeCCCCHHhC
Confidence 321 11 1224579999999976321 123455566555444443 4444443332
Q ss_pred CCChhhhccCCc--ceEEEecCCChHHHHHHHHHHhcCCCCC-CchhhhHHhhhcCCCchHHHHHHHHH
Q 004267 356 SIDPALRRFGRF--DREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTE 421 (764)
Q Consensus 356 ~ld~al~r~~rf--~~~i~i~~p~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~ 421 (764)
.+.+.+.+ || ...++++.|+.+.+..++........+. ++.-+..+++...| ....+..++..
T Consensus 137 ~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~g-n~~~l~~~l~~ 202 (227)
T PRK08903 137 PLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRR-DMPSLMALLDA 202 (227)
T ss_pred CCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHH
Confidence 34566664 44 4789999999988888888665433222 23346667664443 33444444443
No 244
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.10 E-value=2e-09 Score=126.29 Aligned_cols=182 Identities=24% Similarity=0.372 Sum_probs=117.3
Q ss_pred cCCCCCcccccChHHHHH---HHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechh
Q 004267 201 RLDEVGYDDVGGVRKQMA---QIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPE 277 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~---~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~ 277 (764)
.+.+-+++++.|.+..+. .++.++.. ....+++|+|||||||||+|+++++..+..++.+++..
T Consensus 21 k~RP~tldd~vGQe~ii~~~~~L~~~i~~-------------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~ 87 (725)
T PRK13341 21 RLRPRTLEEFVGQDHILGEGRLLRRAIKA-------------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVL 87 (725)
T ss_pred hcCCCcHHHhcCcHHHhhhhHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhh
Confidence 345678899999998875 45555542 22347999999999999999999999998888887643
Q ss_pred hhhhccchhHHHHHHHHHHHH-----hcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecC
Q 004267 278 IMSKLAGESESNLRKAFEEAE-----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATN 352 (764)
Q Consensus 278 l~~~~~g~~~~~l~~vf~~a~-----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn 352 (764)
.. ...++.++..+. .....+|||||+|.+... ....|+..++ ...+++|++|+
T Consensus 88 ~~-------i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~-----------qQdaLL~~lE----~g~IiLI~aTT 145 (725)
T PRK13341 88 AG-------VKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKA-----------QQDALLPWVE----NGTITLIGATT 145 (725)
T ss_pred hh-------hHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHH-----------HHHHHHHHhc----CceEEEEEecC
Confidence 11 122334444332 134579999999987421 1233444443 35677777654
Q ss_pred C-C-CCCChhhhccCCcceEEEecCCChHHHHHHHHHHhcC-------CCC-CCchhhhHHhhhcCCCchHHHHHHHHH
Q 004267 353 R-P-NSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKN-------MKL-SDDVDLERIAKDTHGYVGADLAALCTE 421 (764)
Q Consensus 353 ~-~-~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~-------~~l-~~~~~l~~la~~t~g~~~~dl~~l~~~ 421 (764)
. + ..+++++.+ |. ..+.++.++.++...+++..+.. ..+ .++..+..++....|- .+.+..++..
T Consensus 146 enp~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD-~R~lln~Le~ 220 (725)
T PRK13341 146 ENPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGD-ARSLLNALEL 220 (725)
T ss_pred CChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCC-HHHHHHHHHH
Confidence 3 2 457788887 43 45889999999999998876641 111 1333467777776553 3333333333
No 245
>PHA02244 ATPase-like protein
Probab=99.10 E-value=1e-09 Score=116.83 Aligned_cols=125 Identities=22% Similarity=0.308 Sum_probs=80.2
Q ss_pred CcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecc----cchhcccCcchHHH-HHHHHHHhhCCCeEEEEecccchhhc
Q 004267 515 SKGVLFYGPPGCGKTLLAKAIANECQANFISVKGP----ELLTMWFGESEANV-REIFDKARQSAPCVLFFDELDSIATQ 589 (764)
Q Consensus 515 ~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~----~l~~~~~g~se~~i-~~~f~~a~~~~p~iifiDEid~l~~~ 589 (764)
...++|+||||||||++|+++|..++.+|+.++.- ++.+ +++...... ..++...+ ...++|+||++.+.+
T Consensus 119 ~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G-~i~~~g~~~dgpLl~A~~--~GgvLiLDEId~a~p- 194 (383)
T PHA02244 119 NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKG-FIDANGKFHETPFYEAFK--KGGLFFIDEIDASIP- 194 (383)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcc-cccccccccchHHHHHhh--cCCEEEEeCcCcCCH-
Confidence 34599999999999999999999999999998742 1111 111111111 12222222 346999999998533
Q ss_pred cCCCCCCCCcchHHHHHHHHHh-----hcCC-CCCCcEEEEecCCCC-----------CCCCccCCCCCccceEEeecCC
Q 004267 590 RGSSVGDAGGAADRVLNQLLTE-----MDGM-SAKKTVFIIGATNRP-----------DIIDPALLRPGRLDQLIYIPLP 652 (764)
Q Consensus 590 r~~~~~~~~~~~~~~~~~lL~~-----ld~~-~~~~~v~vi~aTn~~-----------~~ld~allrpgRf~~~i~~~~p 652 (764)
.....++.++.. .++. ....++-+|+|+|.+ ..+++|++. ||- .|+|+.|
T Consensus 195 ----------~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RFv-~I~~dyp 261 (383)
T PHA02244 195 ----------EALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RFA-PIEFDYD 261 (383)
T ss_pred ----------HHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hcE-EeeCCCC
Confidence 122333333321 1111 123578899999973 577999998 995 7999999
Q ss_pred CHHH
Q 004267 653 DEDS 656 (764)
Q Consensus 653 ~~~~ 656 (764)
+..+
T Consensus 262 ~~~E 265 (383)
T PHA02244 262 EKIE 265 (383)
T ss_pred cHHH
Confidence 8433
No 246
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.10 E-value=1.3e-09 Score=121.82 Aligned_cols=168 Identities=26% Similarity=0.358 Sum_probs=113.5
Q ss_pred CCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccchhcccCcchHHHHHHHHHHh--------hCCCeEEEEeccc
Q 004267 513 SPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKAR--------QSAPCVLFFDELD 584 (764)
Q Consensus 513 ~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~~~~~g~se~~i~~~f~~a~--------~~~p~iifiDEid 584 (764)
++.+-+||+||||-||||||+.+|+.+|+..+.|+.+|=. +...+++....|- ...|.++++||||
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeR------t~~~v~~kI~~avq~~s~l~adsrP~CLViDEID 397 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDER------TAPMVKEKIENAVQNHSVLDADSRPVCLVIDEID 397 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhcCceEEEecccccc------cHHHHHHHHHHHHhhccccccCCCcceEEEeccc
Confidence 3445599999999999999999999999999999999843 3344444443332 2568999999998
Q ss_pred chhhccCCCCCCCCcchHHHHHHHHHhhc-------CCCCC------------CcEEEEecCCCCCCCCccCCCCCccce
Q 004267 585 SIATQRGSSVGDAGGAADRVLNQLLTEMD-------GMSAK------------KTVFIIGATNRPDIIDPALLRPGRLDQ 645 (764)
Q Consensus 585 ~l~~~r~~~~~~~~~~~~~~~~~lL~~ld-------~~~~~------------~~v~vi~aTn~~~~ld~allrpgRf~~ 645 (764)
--. ...++.+|..+. |-... =.--|||.+| +.--|||.----|-.
T Consensus 398 Ga~--------------~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICN--dLYaPaLR~Lr~~A~ 461 (877)
T KOG1969|consen 398 GAP--------------RAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICN--DLYAPALRPLRPFAE 461 (877)
T ss_pred CCc--------------HHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEec--CccchhhhhcccceE
Confidence 621 334444444443 11110 1245788888 556677742115888
Q ss_pred EEeecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q 004267 646 LIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRE 705 (764)
Q Consensus 646 ~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~sg~di~~~~~~a~~~a~~~ 705 (764)
+|+|++|......+=|+....+.++. .|...|+..++ ++..||++-++.....|.+.
T Consensus 462 ii~f~~p~~s~Lv~RL~~IC~rE~mr--~d~~aL~~L~e-l~~~DIRsCINtLQfLa~~~ 518 (877)
T KOG1969|consen 462 IIAFVPPSQSRLVERLNEICHRENMR--ADSKALNALCE-LTQNDIRSCINTLQFLASNV 518 (877)
T ss_pred EEEecCCChhHHHHHHHHHHhhhcCC--CCHHHHHHHHH-HhcchHHHHHHHHHHHHHhc
Confidence 99999999887777777776665555 34444444433 34459999988888877654
No 247
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.10 E-value=5.9e-10 Score=119.48 Aligned_cols=161 Identities=23% Similarity=0.371 Sum_probs=103.7
Q ss_pred cCccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhC-------CeeEEE-e
Q 004267 476 PNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ-------ANFISV-K 547 (764)
Q Consensus 476 ~~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~-------~~~i~v-~ 547 (764)
+...|.+|.|++++|..|.-....| ...|+||.|++|||||++|++++..+. .+|... +
T Consensus 12 ~~~pf~~ivGq~~~k~al~~~~~~p-------------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~ 78 (350)
T CHL00081 12 PVFPFTAIVGQEEMKLALILNVIDP-------------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPS 78 (350)
T ss_pred CCCCHHHHhChHHHHHHHHHhccCC-------------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCC
Confidence 4567999999999999887654432 224799999999999999999988652 123200 0
Q ss_pred cccch-----h---------------cc----cCcchHH------HHHHHHHHh---------hCCCeEEEEecccchhh
Q 004267 548 GPELL-----T---------------MW----FGESEAN------VREIFDKAR---------QSAPCVLFFDELDSIAT 588 (764)
Q Consensus 548 ~~~l~-----~---------------~~----~g~se~~------i~~~f~~a~---------~~~p~iifiDEid~l~~ 588 (764)
.+++. . .| .|.++.. +...|.... +..-.++|+|||+.+.+
T Consensus 79 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~ 158 (350)
T CHL00081 79 DPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDD 158 (350)
T ss_pred ChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCH
Confidence 01100 0 00 1112221 112222211 11125999999998743
Q ss_pred ccCCCCCCCCcchHHHHHHHHHhhcC---------CC--CCCcEEEEecCCCCC-CCCccCCCCCccceEEeecCCC-HH
Q 004267 589 QRGSSVGDAGGAADRVLNQLLTEMDG---------MS--AKKTVFIIGATNRPD-IIDPALLRPGRLDQLIYIPLPD-ED 655 (764)
Q Consensus 589 ~r~~~~~~~~~~~~~~~~~lL~~ld~---------~~--~~~~v~vi~aTn~~~-~ld~allrpgRf~~~i~~~~p~-~~ 655 (764)
.+.+.||..|+. .. ...++++|+|.|..+ .+.++++. ||...+.+..|+ .+
T Consensus 159 --------------~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~~ 222 (350)
T CHL00081 159 --------------HLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDPE 222 (350)
T ss_pred --------------HHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCChH
Confidence 345556666543 11 234688888888765 68889988 999999999997 69
Q ss_pred HHHHHHHHHh
Q 004267 656 SRHQIFKACL 665 (764)
Q Consensus 656 ~r~~Il~~~~ 665 (764)
.+.+|++...
T Consensus 223 ~e~~il~~~~ 232 (350)
T CHL00081 223 LRVKIVEQRT 232 (350)
T ss_pred HHHHHHHhhh
Confidence 9999998864
No 248
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.09 E-value=1.4e-10 Score=112.84 Aligned_cols=113 Identities=27% Similarity=0.384 Sum_probs=76.7
Q ss_pred CCcceeeeCCCCCChhHHHHHHHHHhCC----eeEEEecccchhcccCcchHHHHHHHHHHh----hCCCeEEEEecccc
Q 004267 514 PSKGVLFYGPPGCGKTLLAKAIANECQA----NFISVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDS 585 (764)
Q Consensus 514 ~~~gill~GppGtGKT~lak~lA~~~~~----~~i~v~~~~l~~~~~g~se~~i~~~f~~a~----~~~p~iifiDEid~ 585 (764)
|...++|+||+|||||.+|+++|..+.. +++.++++++.. -++.+..+..++..+. .....||||||||.
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~--~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSE--GDDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCS--HHHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccc--cchHHhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence 3456999999999999999999999985 999999998765 1111222333332211 11112999999999
Q ss_pred hhhccCCCCCCCCcchHHHHHHHHHhhcCCC---------CCCcEEEEecCCCCC
Q 004267 586 IATQRGSSVGDAGGAADRVLNQLLTEMDGMS---------AKKTVFIIGATNRPD 631 (764)
Q Consensus 586 l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~---------~~~~v~vi~aTn~~~ 631 (764)
..+..+ ...+-....+.+.||+.||+.. +.+++++|+|||--.
T Consensus 80 a~~~~~---~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 80 AHPSNS---GGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp CSHTTT---TCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred cccccc---ccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 887511 2223345678899999997642 236899999999643
No 249
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.09 E-value=1.4e-09 Score=110.65 Aligned_cols=178 Identities=21% Similarity=0.275 Sum_probs=113.5
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCe------EEEEe
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF------FFCIN 274 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~------~i~v~ 274 (764)
+..+-+++++.|.+.+++.+...+.- ....++|+|||||||||+.++++|.++..+ +...+
T Consensus 29 KYrPkt~de~~gQe~vV~~L~~a~~~-------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~ln 95 (346)
T KOG0989|consen 29 KYRPKTFDELAGQEHVVQVLKNALLR-------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELN 95 (346)
T ss_pred HhCCCcHHhhcchHHHHHHHHHHHhh-------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhc
Confidence 45667899999999999998777653 123479999999999999999999998752 23334
Q ss_pred chhhhhhccchhHHHHHHHHHHHHh---------cCC-eEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCe
Q 004267 275 GPEIMSKLAGESESNLRKAFEEAEK---------NAP-SIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAH 344 (764)
Q Consensus 275 ~~~l~~~~~g~~~~~l~~vf~~a~~---------~~p-~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~ 344 (764)
.++-.+.... ..++. -|..... +.| -|++|||.|.+.. .....|...|+.... .
T Consensus 96 aSderGisvv--r~Kik-~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmts-----------daq~aLrr~mE~~s~--~ 159 (346)
T KOG0989|consen 96 ASDERGISVV--REKIK-NFAKLTVLLKRSDGYPCPPFKIIILDECDSMTS-----------DAQAALRRTMEDFSR--T 159 (346)
T ss_pred ccccccccch--hhhhc-CHHHHhhccccccCCCCCcceEEEEechhhhhH-----------HHHHHHHHHHhcccc--c
Confidence 4333222111 11111 1222111 122 6999999998752 344678888887655 4
Q ss_pred EEEEEecCCCCCCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCC-CchhhhHHhhhcCCC
Q 004267 345 VIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGY 410 (764)
Q Consensus 345 v~vI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~ 410 (764)
+.+|..||.++.|...+.+ |.. .+.|+....+.-...|+..+..-.+. ++..+..++..+.|-
T Consensus 160 trFiLIcnylsrii~pi~S--RC~-KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~Gd 223 (346)
T KOG0989|consen 160 TRFILICNYLSRIIRPLVS--RCQ-KFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGD 223 (346)
T ss_pred eEEEEEcCChhhCChHHHh--hHH-HhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCc
Confidence 5566678999888777766 553 34556555555555566555443333 334577788777764
No 250
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.09 E-value=5.1e-10 Score=120.05 Aligned_cols=155 Identities=22% Similarity=0.318 Sum_probs=98.4
Q ss_pred cccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHh-------CCeeE-------
Q 004267 479 SWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC-------QANFI------- 544 (764)
Q Consensus 479 ~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~-------~~~~i------- 544 (764)
.|..|.|++++|..|.-....| ...+++|.|+||+||||+++++++.+ +.+|-
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~-------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDP-------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPE 68 (337)
T ss_pred CccccccHHHHHHHHHHHhcCC-------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCcc
Confidence 4678999999998765433221 13469999999999999999999876 22211
Q ss_pred ------EE--ec-------------ccchh-----cccCcc--hHHH--------HHHHHHHhhCCCeEEEEecccchhh
Q 004267 545 ------SV--KG-------------PELLT-----MWFGES--EANV--------REIFDKARQSAPCVLFFDELDSIAT 588 (764)
Q Consensus 545 ------~v--~~-------------~~l~~-----~~~g~s--e~~i--------~~~f~~a~~~~p~iifiDEid~l~~ 588 (764)
.. .. .++-. ..+|.. ++.+ ..++.+|. ..++|+|||+.+.
T Consensus 69 ~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~---~GvL~lDEi~~L~- 144 (337)
T TIGR02030 69 MMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARAN---RGILYIDEVNLLE- 144 (337)
T ss_pred ccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceecc---CCEEEecChHhCC-
Confidence 00 00 01100 122221 0000 01122222 2599999999863
Q ss_pred ccCCCCCCCCcchHHHHHHHHHhhcCCC-----------CCCcEEEEecCCCCC-CCCccCCCCCccceEEeecCCCH-H
Q 004267 589 QRGSSVGDAGGAADRVLNQLLTEMDGMS-----------AKKTVFIIGATNRPD-IIDPALLRPGRLDQLIYIPLPDE-D 655 (764)
Q Consensus 589 ~r~~~~~~~~~~~~~~~~~lL~~ld~~~-----------~~~~v~vi~aTn~~~-~ld~allrpgRf~~~i~~~~p~~-~ 655 (764)
..+.+.|+..|+... ...++++|+|+|..+ .+.++++. ||...+.++.|+. +
T Consensus 145 -------------~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~e 209 (337)
T TIGR02030 145 -------------DHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVE 209 (337)
T ss_pred -------------HHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHH
Confidence 345566666664321 124688889988655 68889998 9999999999875 8
Q ss_pred HHHHHHHHHh
Q 004267 656 SRHQIFKACL 665 (764)
Q Consensus 656 ~r~~Il~~~~ 665 (764)
+|.+|++...
T Consensus 210 er~eIL~~~~ 219 (337)
T TIGR02030 210 LRVEIVERRT 219 (337)
T ss_pred HHHHHHHhhh
Confidence 9999998854
No 251
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.09 E-value=3e-09 Score=122.32 Aligned_cols=187 Identities=21% Similarity=0.315 Sum_probs=126.6
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCe-----------
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 269 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~----------- 269 (764)
...+-+|+++.|.+..++.++..+... ..+..+||+||+|||||++|+.+|+.+++.
T Consensus 9 k~rP~~f~~viGq~~v~~~L~~~i~~~------------~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C 76 (559)
T PRK05563 9 KWRPQTFEDVVGQEHITKTLKNAIKQG------------KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNEC 76 (559)
T ss_pred HhCCCcHHhccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 356778999999999999998887641 234568999999999999999999987531
Q ss_pred -------------EEEEechhhhhhccchhHHHHHHHHHHHHh----cCCeEEEEccccccCCCCCCCchHHHHHHHHHH
Q 004267 270 -------------FFCINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 332 (764)
Q Consensus 270 -------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L 332 (764)
++.+++. .+.....++.+...+.. ....|++|||+|.+.. ...+.|
T Consensus 77 ~~C~~i~~g~~~dv~eidaa------s~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~-----------~a~naL 139 (559)
T PRK05563 77 EICKAITNGSLMDVIEIDAA------SNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLST-----------GAFNAL 139 (559)
T ss_pred HHHHHHhcCCCCCeEEeecc------ccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH-----------HHHHHH
Confidence 2333331 11233456666666542 3456999999998742 234567
Q ss_pred HHHhhcccCCCeEEEEEecCCCCCCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCC-CchhhhHHhhhcCCCc
Q 004267 333 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYV 411 (764)
Q Consensus 333 l~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~~ 411 (764)
+..++... ..+++|.+|+.++.+.+.+++ |+ ..+++..|+..+-...++..+....+. ++..+..++..+.| .
T Consensus 140 LKtLEepp--~~~ifIlatt~~~ki~~tI~S--Rc-~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G-~ 213 (559)
T PRK05563 140 LKTLEEPP--AHVIFILATTEPHKIPATILS--RC-QRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEG-G 213 (559)
T ss_pred HHHhcCCC--CCeEEEEEeCChhhCcHHHHh--Hh-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 77776542 356666667778899998887 66 457888898888777777666544432 33456777777766 4
Q ss_pred hHHHHHHHHHH
Q 004267 412 GADLAALCTEA 422 (764)
Q Consensus 412 ~~dl~~l~~~a 422 (764)
.++...++..+
T Consensus 214 ~R~al~~Ldq~ 224 (559)
T PRK05563 214 MRDALSILDQA 224 (559)
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 252
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.09 E-value=3.1e-11 Score=113.77 Aligned_cols=109 Identities=28% Similarity=0.398 Sum_probs=71.2
Q ss_pred ceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccc------hhcccC---cchHHHHHHHHHHhhCCCeEEEEecccchh
Q 004267 517 GVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL------LTMWFG---ESEANVREIFDKARQSAPCVLFFDELDSIA 587 (764)
Q Consensus 517 gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l------~~~~~g---~se~~i~~~f~~a~~~~p~iifiDEid~l~ 587 (764)
+++|+||||||||++|+.+|..++.+++.+.++.. ...|.- ..+-.-..+.+..+ .++++|||||+..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~--~~~il~lDEin~a- 77 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR--KGGILVLDEINRA- 77 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH--EEEEEEESSCGG--
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccccc--ceeEEEECCcccC-
Confidence 48999999999999999999999999999887643 222221 11000000011111 4589999999874
Q ss_pred hccCCCCCCCCcchHHHHHHHHHhhcCCC-----------CCC------cEEEEecCCCCC----CCCccCCCCCcc
Q 004267 588 TQRGSSVGDAGGAADRVLNQLLTEMDGMS-----------AKK------TVFIIGATNRPD----IIDPALLRPGRL 643 (764)
Q Consensus 588 ~~r~~~~~~~~~~~~~~~~~lL~~ld~~~-----------~~~------~v~vi~aTn~~~----~ld~allrpgRf 643 (764)
...+++.|+..++.-. ... ++.+|+|+|..+ .+++|+++ ||
T Consensus 78 -------------~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 78 -------------PPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp --------------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred -------------CHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 2456666666665421 011 489999999998 89999998 87
No 253
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.09 E-value=3.8e-09 Score=116.47 Aligned_cols=175 Identities=23% Similarity=0.290 Sum_probs=117.1
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeE----------
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFF---------- 270 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~---------- 270 (764)
+..+.+|+++.|.+..++.++..+... ..+.++|||||||+|||+++++++..+....
T Consensus 10 k~rP~~~~~iig~~~~~~~l~~~i~~~------------~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~ 77 (367)
T PRK14970 10 KYRPQTFDDVVGQSHITNTLLNAIENN------------HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSF 77 (367)
T ss_pred HHCCCcHHhcCCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCc
Confidence 456778999999999999998887641 2346899999999999999999999875421
Q ss_pred --EEEechhhhhhccchhHHHHHHHHHHHHh----cCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCe
Q 004267 271 --FCINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAH 344 (764)
Q Consensus 271 --i~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~ 344 (764)
+.+++. .......++.+++.+.. ..+.++++||++.+.. ...+.|+..++... ..
T Consensus 78 ~~~~l~~~------~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~-----------~~~~~ll~~le~~~--~~ 138 (367)
T PRK14970 78 NIFELDAA------SNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS-----------AAFNAFLKTLEEPP--AH 138 (367)
T ss_pred ceEEeccc------cCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH-----------HHHHHHHHHHhCCC--Cc
Confidence 112111 11123456677766543 3356999999987642 12355666665432 24
Q ss_pred EEEEEecCCCCCCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCC-CCchhhhHHhhhcCC
Q 004267 345 VIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDDVDLERIAKDTHG 409 (764)
Q Consensus 345 v~vI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l-~~~~~l~~la~~t~g 409 (764)
.++|.+++.+..+.+++++ |+ ..+++..|+.++...++...+....+ .++..+..++..+.|
T Consensus 139 ~~~Il~~~~~~kl~~~l~s--r~-~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g 201 (367)
T PRK14970 139 AIFILATTEKHKIIPTILS--RC-QIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG 201 (367)
T ss_pred eEEEEEeCCcccCCHHHHh--cc-eeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC
Confidence 4555566677888888876 55 45789999988888777765554443 233456777776554
No 254
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.09 E-value=2.8e-09 Score=122.37 Aligned_cols=185 Identities=15% Similarity=0.230 Sum_probs=122.3
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCe-----------
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 269 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~----------- 269 (764)
+..+-+|+++.|.+..++.|+.++..- ..+..+||+||+|+||||+++++|+.+++.
T Consensus 9 KyRP~~f~dviGQe~vv~~L~~~l~~~------------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~ 76 (618)
T PRK14951 9 KYRPRSFSEMVGQEHVVQALTNALTQQ------------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITAT 76 (618)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCC
Confidence 455678999999999999998887641 123468999999999999999999998642
Q ss_pred ------------------EEEEechhhhhhccchhHHHHHHHHHHHHh----cCCeEEEEccccccCCCCCCCchHHHHH
Q 004267 270 ------------------FFCINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERR 327 (764)
Q Consensus 270 ------------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~ 327 (764)
++.+++.. ...-..++.+.+.+.. ....|++|||+|.+...
T Consensus 77 pCg~C~~C~~i~~g~h~D~~eldaas------~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~----------- 139 (618)
T PRK14951 77 PCGVCQACRDIDSGRFVDYTELDAAS------NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNT----------- 139 (618)
T ss_pred CCCccHHHHHHHcCCCCceeecCccc------ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHH-----------
Confidence 12222111 1122356666665432 22469999999987422
Q ss_pred HHHHHHHHhhcccCCCeEEEEEecCCCCCCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCC-CchhhhHHhhh
Q 004267 328 IVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKD 406 (764)
Q Consensus 328 v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-~~~~l~~la~~ 406 (764)
..+.|+..++... ..+.+|.+|+++..+.+.+++ |+ ..+++..++.++..+.++..+....+. ++..+..++..
T Consensus 140 a~NaLLKtLEEPP--~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~ 214 (618)
T PRK14951 140 AFNAMLKTLEEPP--EYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARA 214 (618)
T ss_pred HHHHHHHhcccCC--CCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 2355666666532 356666677778888887776 65 668888888888777777665443332 33457777777
Q ss_pred cCCCchHHHHHHHH
Q 004267 407 THGYVGADLAALCT 420 (764)
Q Consensus 407 t~g~~~~dl~~l~~ 420 (764)
+.| ...++..++.
T Consensus 215 s~G-slR~al~lLd 227 (618)
T PRK14951 215 ARG-SMRDALSLTD 227 (618)
T ss_pred cCC-CHHHHHHHHH
Confidence 776 3344444443
No 255
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.09 E-value=2.8e-09 Score=117.11 Aligned_cols=175 Identities=22% Similarity=0.340 Sum_probs=120.0
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCe-----------
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 269 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~----------- 269 (764)
+..+.+|+++.|.++.++.+++.+... ..+..+||+||||+|||++++++++.+...
T Consensus 7 ~~rp~~~~~iig~~~~~~~l~~~~~~~------------~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c 74 (355)
T TIGR02397 7 KYRPQTFEDVIGQEHIVQTLKNAIKNG------------RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNEC 74 (355)
T ss_pred HhCCCcHhhccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 456678999999999999998877531 234579999999999999999999987422
Q ss_pred -------------EEEEechhhhhhccchhHHHHHHHHHHHHhc----CCeEEEEccccccCCCCCCCchHHHHHHHHHH
Q 004267 270 -------------FFCINGPEIMSKLAGESESNLRKAFEEAEKN----APSIIFIDEIDSIAPKREKTHGEVERRIVSQL 332 (764)
Q Consensus 270 -------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~----~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L 332 (764)
++.+++.. ......++.+++.+... ...+++|||+|.+.. ...+.|
T Consensus 75 ~~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~-----------~~~~~L 137 (355)
T TIGR02397 75 ESCKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSK-----------SAFNAL 137 (355)
T ss_pred HHHHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCH-----------HHHHHH
Confidence 23333321 11233466777765432 335999999987732 234567
Q ss_pred HHHhhcccCCCeEEEEEecCCCCCCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCC-CchhhhHHhhhcCC
Q 004267 333 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHG 409 (764)
Q Consensus 333 l~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g 409 (764)
+..++... ..+++|.+|++++.+.+.+++ |+ ..++++.|+..+..+++...++...+. ++..+..++..+.|
T Consensus 138 l~~le~~~--~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g 210 (355)
T TIGR02397 138 LKTLEEPP--EHVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADG 210 (355)
T ss_pred HHHHhCCc--cceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 77776533 356666677888888888887 66 568999999999888888766544332 23346666666655
No 256
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.08 E-value=1.8e-09 Score=123.24 Aligned_cols=187 Identities=18% Similarity=0.260 Sum_probs=122.2
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCe-----------
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 269 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~----------- 269 (764)
+..+-+|+++.|.+..++.+..++... ..+..+||+||+|+||||+|+++|+.+++.
T Consensus 9 k~rP~~f~divGq~~v~~~L~~~i~~~------------~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C 76 (527)
T PRK14969 9 KWRPKSFSELVGQEHVVRALTNALEQQ------------RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVC 76 (527)
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHHcC------------CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 345668999999999999998887641 123468999999999999999999998652
Q ss_pred -------------EEEEechhhhhhccchhHHHHHHHHHHHHh----cCCeEEEEccccccCCCCCCCchHHHHHHHHHH
Q 004267 270 -------------FFCINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 332 (764)
Q Consensus 270 -------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L 332 (764)
++.+++.. ......++.++..+.. ....|+||||+|.+.. ...+.|
T Consensus 77 ~~C~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~-----------~a~naL 139 (527)
T PRK14969 77 SACLEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSK-----------SAFNAM 139 (527)
T ss_pred HHHHHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCH-----------HHHHHH
Confidence 12222110 1123456777766543 2346999999987742 234567
Q ss_pred HHHhhcccCCCeEEEEEecCCCCCCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCC-CchhhhHHhhhcCCCc
Q 004267 333 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYV 411 (764)
Q Consensus 333 l~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~~ 411 (764)
+..++... ..+.+|.+|++++.+.+.+++ |+ ..+++..++.++-...+...+....+. ++..+..++..+.|-
T Consensus 140 LK~LEepp--~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~Gs- 213 (527)
T PRK14969 140 LKTLEEPP--EHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGS- 213 (527)
T ss_pred HHHHhCCC--CCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-
Confidence 77777633 356666677778888777776 55 557888888887766666554332222 333466777776653
Q ss_pred hHHHHHHHHHH
Q 004267 412 GADLAALCTEA 422 (764)
Q Consensus 412 ~~dl~~l~~~a 422 (764)
..+...++..+
T Consensus 214 lr~al~lldqa 224 (527)
T PRK14969 214 MRDALSLLDQA 224 (527)
T ss_pred HHHHHHHHHHH
Confidence 34444455443
No 257
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.08 E-value=4.1e-09 Score=121.89 Aligned_cols=182 Identities=21% Similarity=0.297 Sum_probs=122.2
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEE---echh
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCI---NGPE 277 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v---~~~~ 277 (764)
...+-+|+++.|.+..++.|+..+... ..+..+||+||+|+|||++|+++|..+.+.-... .|..
T Consensus 11 KyRP~~f~dIiGQe~~v~~L~~aI~~~------------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~ 78 (725)
T PRK07133 11 KYRPKTFDDIVGQDHIVQTLKNIIKSN------------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQE 78 (725)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhH
Confidence 456778999999999999998888641 2245689999999999999999999876531100 0100
Q ss_pred h----------h--hhccchhHHHHHHHHHHHHh----cCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccC
Q 004267 278 I----------M--SKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKS 341 (764)
Q Consensus 278 l----------~--~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~ 341 (764)
. . ..........++.+.+.+.. ....|++|||+|.+.. .....|+..|+...
T Consensus 79 C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~-----------~A~NALLKtLEEPP- 146 (725)
T PRK07133 79 CIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK-----------SAFNALLKTLEEPP- 146 (725)
T ss_pred HHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH-----------HHHHHHHHHhhcCC-
Confidence 0 0 00000123446777766553 3446999999998742 23466777777643
Q ss_pred CCeEEEEEecCCCCCCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCC-CchhhhHHhhhcCCC
Q 004267 342 RAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGY 410 (764)
Q Consensus 342 ~~~v~vI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~ 410 (764)
..+++|.+|+.++.+.+.+++ |+ ..+.+..++.++-...+...+....+. ++..+..++..+.|-
T Consensus 147 -~~tifILaTte~~KLl~TI~S--Rc-q~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~Gs 212 (725)
T PRK07133 147 -KHVIFILATTEVHKIPLTILS--RV-QRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGS 212 (725)
T ss_pred -CceEEEEEcCChhhhhHHHHh--hc-eeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 366777777888999988887 66 468999999888877777655443332 233466777777664
No 258
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.08 E-value=5.9e-10 Score=121.74 Aligned_cols=121 Identities=26% Similarity=0.497 Sum_probs=79.6
Q ss_pred CcceeeeCCCCCChhHHHHHHHHHhCC-------eeEEEec----ccchhcc----cCcc--hHHHHHHHHHHhhC--CC
Q 004267 515 SKGVLFYGPPGCGKTLLAKAIANECQA-------NFISVKG----PELLTMW----FGES--EANVREIFDKARQS--AP 575 (764)
Q Consensus 515 ~~gill~GppGtGKT~lak~lA~~~~~-------~~i~v~~----~~l~~~~----~g~s--e~~i~~~f~~a~~~--~p 575 (764)
.++++|+||||||||++|+.+|..+.. .++.+.. .+++..+ +|-. .....++.+.|... .|
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~ 273 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKK 273 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccCC
Confidence 467999999999999999999997642 1222321 2333222 1111 11234455666654 47
Q ss_pred eEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcC--------------------CCCCCcEEEEecCCCCC----
Q 004267 576 CVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDG--------------------MSAKKTVFIIGATNRPD---- 631 (764)
Q Consensus 576 ~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~--------------------~~~~~~v~vi~aTn~~~---- 631 (764)
+++|||||++.- ..++..++++.|+. +.-..++.||||+|..|
T Consensus 274 ~vliIDEINRan-------------i~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~ 340 (459)
T PRK11331 274 YVFIIDEINRAN-------------LSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSLA 340 (459)
T ss_pred cEEEEehhhccC-------------HHHhhhhhhhhccccccccccceeeeccccccccccCCCCeEEEEecCccccchh
Confidence 999999998742 23445555554441 23346899999999988
Q ss_pred CCCccCCCCCccceEEeecC
Q 004267 632 IIDPALLRPGRLDQLIYIPL 651 (764)
Q Consensus 632 ~ld~allrpgRf~~~i~~~~ 651 (764)
.+|.|++| ||. .|++.+
T Consensus 341 ~lD~AlrR--RF~-fi~i~p 357 (459)
T PRK11331 341 VVDYALRR--RFS-FIDIEP 357 (459)
T ss_pred hccHHHHh--hhh-eEEecC
Confidence 89999999 996 566654
No 259
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.07 E-value=2.3e-09 Score=119.22 Aligned_cols=57 Identities=19% Similarity=0.256 Sum_probs=45.1
Q ss_pred HHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCC
Q 004267 291 RKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 357 (764)
Q Consensus 291 ~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~l 357 (764)
|.++..|..+.|.+|+.|| +....+..+..++++++..+....++-+|..||++.-+
T Consensus 162 Rv~iAmALa~~P~LLIaDE----------PTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vv 218 (539)
T COG1123 162 RVMIAMALALKPKLLIADE----------PTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVV 218 (539)
T ss_pred HHHHHHHHhCCCCEEEECC----------CccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHH
Confidence 4455567778899999999 55666677788999999999888888888899986533
No 260
>PRK08727 hypothetical protein; Validated
Probab=99.07 E-value=4.9e-09 Score=107.71 Aligned_cols=147 Identities=26% Similarity=0.384 Sum_probs=95.5
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh---CCeEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCC
Q 004267 243 KGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREK 319 (764)
Q Consensus 243 ~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~ 319 (764)
..++|+||+|||||+|+++++..+ +.....++..+.. ..+..+++... ...+|+|||++.+..+..
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~--------~~~~~~~~~l~--~~dlLiIDDi~~l~~~~~- 110 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA--------GRLRDALEALE--GRSLVALDGLESIAGQRE- 110 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh--------hhHHHHHHHHh--cCCEEEEeCcccccCChH-
Confidence 569999999999999999997764 4444555543322 22334444433 346999999998764321
Q ss_pred CchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCC---ChhhhccCCc--ceEEEecCCChHHHHHHHHHHhc--CC
Q 004267 320 THGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI---DPALRRFGRF--DREIDIGVPDEVGRLEVLRIHTK--NM 392 (764)
Q Consensus 320 ~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~l---d~al~r~~rf--~~~i~i~~p~~~~R~~il~~~~~--~~ 392 (764)
....++.+++....+..-+|+.+...|..+ ++.+++ || ...+.++.|+.+++.++++.++. ++
T Consensus 111 --------~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l 180 (233)
T PRK08727 111 --------DEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQRRGL 180 (233)
T ss_pred --------HHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHHcCC
Confidence 113344555554443333444444566655 688887 65 46789999999999999997654 34
Q ss_pred CCCCchhhhHHhhhcCCCc
Q 004267 393 KLSDDVDLERIAKDTHGYV 411 (764)
Q Consensus 393 ~l~~~~~l~~la~~t~g~~ 411 (764)
.+. +..+..++..+.|-.
T Consensus 181 ~l~-~e~~~~La~~~~rd~ 198 (233)
T PRK08727 181 ALD-EAAIDWLLTHGEREL 198 (233)
T ss_pred CCC-HHHHHHHHHhCCCCH
Confidence 333 345788888877543
No 261
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.07 E-value=3.7e-09 Score=124.78 Aligned_cols=132 Identities=25% Similarity=0.324 Sum_probs=87.4
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhh------hhccchh----HHHHHHHHHHHHhcCCeEEEEccc
Q 004267 241 PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIM------SKLAGES----ESNLRKAFEEAEKNAPSIIFIDEI 310 (764)
Q Consensus 241 ~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~------~~~~g~~----~~~l~~vf~~a~~~~p~il~iDEi 310 (764)
..-.+||.||..||||+++..+|.+.++.|+.+|..+.. +.|+... +-+=+ ++-.|.+.. -.+++||+
T Consensus 887 ~~fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEG-vLVeAlR~G-yWIVLDEL 964 (4600)
T COG5271 887 SNFPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEG-VLVEALRRG-YWIVLDEL 964 (4600)
T ss_pred cCCcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehh-HHHHHHhcC-cEEEeecc
Confidence 345699999999999999999999999999999976542 2232211 11222 333444433 47899998
Q ss_pred cccCCCCCCCchHHHHHHHHHHHHHhhccc------------CCCeEEEEEecCCCC------CCChhhhccCCcceEEE
Q 004267 311 DSIAPKREKTHGEVERRIVSQLLTLMDGLK------------SRAHVIVIGATNRPN------SIDPALRRFGRFDREID 372 (764)
Q Consensus 311 d~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~------------~~~~v~vI~atn~~~------~ld~al~r~~rf~~~i~ 372 (764)
.-.+ ..+++.|..++|.-+ ..+.+.+.||.|+|. .+..|+|. || .+++
T Consensus 965 NLAp-----------TDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRN--RF-lE~h 1030 (4600)
T COG5271 965 NLAP-----------TDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRN--RF-LEMH 1030 (4600)
T ss_pred ccCc-----------HHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHh--hh-Hhhh
Confidence 6432 235677777777532 345677888888774 45677776 77 4556
Q ss_pred ecCCChHHHHHHHHHH
Q 004267 373 IGVPDEVGRLEVLRIH 388 (764)
Q Consensus 373 i~~p~~~~R~~il~~~ 388 (764)
+..-.+++-..||...
T Consensus 1031 FddipedEle~ILh~r 1046 (4600)
T COG5271 1031 FDDIPEDELEEILHGR 1046 (4600)
T ss_pred cccCcHHHHHHHHhcc
Confidence 6655566666676543
No 262
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.07 E-value=2.1e-09 Score=113.28 Aligned_cols=195 Identities=19% Similarity=0.269 Sum_probs=116.3
Q ss_pred CCCcc-eeeeCCCCCChhHHHHHHHHHhCC-eeEE--Eec-----ccchh---cccCcc-----h-HHHHHHH----HHH
Q 004267 513 SPSKG-VLFYGPPGCGKTLLAKAIANECQA-NFIS--VKG-----PELLT---MWFGES-----E-ANVREIF----DKA 570 (764)
Q Consensus 513 ~~~~g-ill~GppGtGKT~lak~lA~~~~~-~~i~--v~~-----~~l~~---~~~g~s-----e-~~i~~~f----~~a 570 (764)
..+.+ ++|+||||+||||+++.++..+.. .+.. +.. .+++. ...|.. . ...+.+. ...
T Consensus 40 ~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~ 119 (269)
T TIGR03015 40 SQREGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQF 119 (269)
T ss_pred hcCCCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 33343 889999999999999999998652 2221 111 11110 111211 1 1122222 223
Q ss_pred hhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEec--CCCCCCCC-c---cCCCCCccc
Q 004267 571 RQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGA--TNRPDIID-P---ALLRPGRLD 644 (764)
Q Consensus 571 ~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~a--Tn~~~~ld-~---allrpgRf~ 644 (764)
....+.++++||++.+... ....+..+..... .....+.|+.+ +...+.+. + .+.+ |+.
T Consensus 120 ~~~~~~vliiDe~~~l~~~-----------~~~~l~~l~~~~~--~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~--r~~ 184 (269)
T TIGR03015 120 AAGKRALLVVDEAQNLTPE-----------LLEELRMLSNFQT--DNAKLLQIFLVGQPEFRETLQSPQLQQLRQ--RII 184 (269)
T ss_pred hCCCCeEEEEECcccCCHH-----------HHHHHHHHhCccc--CCCCeEEEEEcCCHHHHHHHcCchhHHHHh--hee
Confidence 3556789999999986321 1222222222211 11222222222 22222222 1 2333 888
Q ss_pred eEEeecCCCHHHHHHHHHHHhccCCC-----CCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcC
Q 004267 645 QLIYIPLPDEDSRHQIFKACLRKSPV-----SKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRRD 719 (764)
Q Consensus 645 ~~i~~~~p~~~~r~~Il~~~~~~~~~-----~~~~~l~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~ 719 (764)
..+++++.+.++..+++...++..+. -.+..++.+++.+.|.. +.|..+|..|...|..+.
T Consensus 185 ~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p-~~i~~l~~~~~~~a~~~~------------- 250 (269)
T TIGR03015 185 ASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIP-RLINILCDRLLLSAFLEE------------- 250 (269)
T ss_pred eeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcc-cHHHHHHHHHHHHHHHcC-------------
Confidence 89999999999999999888864432 23345788889998875 559999999988877654
Q ss_pred CCccccccccccccccccHHHHHHHHHhcC
Q 004267 720 NPEAMDEDAAEDEVSEIKAAHFEESMKFAR 749 (764)
Q Consensus 720 ~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~ 749 (764)
...|+.++++.++..+.
T Consensus 251 -------------~~~i~~~~v~~~~~~~~ 267 (269)
T TIGR03015 251 -------------KREIGGEEVREVIAEID 267 (269)
T ss_pred -------------CCCCCHHHHHHHHHHhh
Confidence 23699999999998764
No 263
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.06 E-value=5.4e-09 Score=112.93 Aligned_cols=175 Identities=23% Similarity=0.277 Sum_probs=113.5
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCC-----eEEEEec
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA-----FFFCING 275 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~-----~~i~v~~ 275 (764)
...+.+|+|+.|.+++++.++.++... ...+++|+||||||||++++++++.+.. .++.++.
T Consensus 10 kyrP~~~~~~~g~~~~~~~l~~~i~~~-------------~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~ 76 (319)
T PRK00440 10 KYRPRTLDEIVGQEEIVERLKSYVKEK-------------NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNA 76 (319)
T ss_pred hhCCCcHHHhcCcHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecc
Confidence 456678999999999999998887531 1235899999999999999999998732 2444443
Q ss_pred hhhhhhccchhHHHHHHHHHHHHh------cCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEE
Q 004267 276 PEIMSKLAGESESNLRKAFEEAEK------NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIG 349 (764)
Q Consensus 276 ~~l~~~~~g~~~~~l~~vf~~a~~------~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~ 349 (764)
++.. ....++..+..... ..+.+++|||+|.+... ....|...++..... ..+|.
T Consensus 77 ~~~~------~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~-----------~~~~L~~~le~~~~~--~~lIl 137 (319)
T PRK00440 77 SDER------GIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSD-----------AQQALRRTMEMYSQN--TRFIL 137 (319)
T ss_pred cccc------chHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHH-----------HHHHHHHHHhcCCCC--CeEEE
Confidence 3211 11112222222221 23469999999887421 124566666665443 34444
Q ss_pred ecCCCCCCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCC-CCchhhhHHhhhcCCC
Q 004267 350 ATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDDVDLERIAKDTHGY 410 (764)
Q Consensus 350 atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l-~~~~~l~~la~~t~g~ 410 (764)
+++.+..+.+.+++ |+. .++++.++.++...+++..+....+ .++..+..++..+.|.
T Consensus 138 ~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~gd 196 (319)
T PRK00440 138 SCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGD 196 (319)
T ss_pred EeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 56666667677766 553 4899999999888888877655443 2344577787776654
No 264
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.06 E-value=1.8e-09 Score=116.21 Aligned_cols=172 Identities=20% Similarity=0.305 Sum_probs=115.2
Q ss_pred cccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCC--------eeEEEeccc
Q 004267 479 SWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------NFISVKGPE 550 (764)
Q Consensus 479 ~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~--------~~i~v~~~~ 550 (764)
+|++|.|++.+++.+...+.. -+.+..+||+||+|+|||++|+++|..+-+ .++.+...+
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~------------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~ 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK------------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc------------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc
Confidence 589999999999888766431 133456899999999999999999996522 222222210
Q ss_pred chhcccCcchHHHHHHHHHHh----hCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEec
Q 004267 551 LLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGA 626 (764)
Q Consensus 551 l~~~~~g~se~~i~~~f~~a~----~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~a 626 (764)
++. -+-..||++.+.+. .....|++||++|.+- ....|.||..|+.. ..++++|.+
T Consensus 70 --~~~--i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~--------------~~a~naLLK~LEep--p~~t~~il~ 129 (313)
T PRK05564 70 --KKS--IGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMT--------------EQAQNAFLKTIEEP--PKGVFIILL 129 (313)
T ss_pred --CCC--CCHHHHHHHHHHHhcCcccCCceEEEEechhhcC--------------HHHHHHHHHHhcCC--CCCeEEEEE
Confidence 000 12235666666443 3445799999998862 34567889999863 345555556
Q ss_pred CCCCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCH
Q 004267 627 TNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSG 688 (764)
Q Consensus 627 Tn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~sg 688 (764)
|+.++.+-|.+.+ |+. .++|++|+.++....++..... + ++..+..++..+.|-.+
T Consensus 130 ~~~~~~ll~TI~S--Rc~-~~~~~~~~~~~~~~~l~~~~~~--~-~~~~~~~l~~~~~g~~~ 185 (313)
T PRK05564 130 CENLEQILDTIKS--RCQ-IYKLNRLSKEEIEKFISYKYND--I-KEEEKKSAIAFSDGIPG 185 (313)
T ss_pred eCChHhCcHHHHh--hce-eeeCCCcCHHHHHHHHHHHhcC--C-CHHHHHHHHHHcCCCHH
Confidence 6778999898887 884 9999999998887777655432 2 22345667777665433
No 265
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.05 E-value=1.2e-08 Score=118.81 Aligned_cols=179 Identities=27% Similarity=0.443 Sum_probs=111.0
Q ss_pred CCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCeEE
Q 004267 202 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFF 271 (764)
Q Consensus 202 ~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l----------~~~~i 271 (764)
+.+-+|+++.|.+..++.+...+.. ..+.+++|+|||||||||+|+++.+.. +.+|+
T Consensus 148 ~rp~~~~~iiGqs~~~~~l~~~ia~-------------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv 214 (615)
T TIGR02903 148 LRPRAFSEIVGQERAIKALLAKVAS-------------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFV 214 (615)
T ss_pred cCcCcHHhceeCcHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeE
Confidence 4566889999999998887666543 224579999999999999999998765 24688
Q ss_pred EEechhhh-------hhccchhHH----HHHHHHHH----------HHhcCCeEEEEccccccCCCCCCCchHHHHHHHH
Q 004267 272 CINGPEIM-------SKLAGESES----NLRKAFEE----------AEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVS 330 (764)
Q Consensus 272 ~v~~~~l~-------~~~~g~~~~----~l~~vf~~----------a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~ 330 (764)
.++|..+. ..+.+.... ..+..+.. .......+|||||++.+-+. ...
T Consensus 215 ~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~-----------~Q~ 283 (615)
T TIGR02903 215 EVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPL-----------LQN 283 (615)
T ss_pred EEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHH-----------HHH
Confidence 88886541 111111100 01111110 11223469999999876422 223
Q ss_pred HHHHHhhccc--------------------------CCCeEEEEE-ecCCCCCCChhhhccCCcceEEEecCCChHHHHH
Q 004267 331 QLLTLMDGLK--------------------------SRAHVIVIG-ATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLE 383 (764)
Q Consensus 331 ~Ll~~ld~~~--------------------------~~~~v~vI~-atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~ 383 (764)
.|+..++.-. ....+++|+ +|+.+..+++++++ ||. .+.++.++.++..+
T Consensus 284 ~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~~ 360 (615)
T TIGR02903 284 KLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIAL 360 (615)
T ss_pred HHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHHH
Confidence 3444443210 122456655 45668889999987 775 57888899999999
Q ss_pred HHHHHhcCCCCC-CchhhhHHhhhc
Q 004267 384 VLRIHTKNMKLS-DDVDLERIAKDT 407 (764)
Q Consensus 384 il~~~~~~~~l~-~~~~l~~la~~t 407 (764)
|++..+....+. .+.-++.++..+
T Consensus 361 Il~~~a~~~~v~ls~eal~~L~~ys 385 (615)
T TIGR02903 361 IVLNAAEKINVHLAAGVEELIARYT 385 (615)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHCC
Confidence 999877654322 233344554443
No 266
>PRK09087 hypothetical protein; Validated
Probab=99.05 E-value=9.4e-10 Score=112.14 Aligned_cols=135 Identities=20% Similarity=0.257 Sum_probs=88.5
Q ss_pred ceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccchhcccCcchHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCC
Q 004267 517 GVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGD 596 (764)
Q Consensus 517 gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~ 596 (764)
.++|+||+|||||+|+++++...+..++. ..++.. .++..... .++++||++.+.. .
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~~~~~i~--~~~~~~-----------~~~~~~~~---~~l~iDDi~~~~~-------~ 102 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKSDALLIH--PNEIGS-----------DAANAAAE---GPVLIEDIDAGGF-------D 102 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcCCEEec--HHHcch-----------HHHHhhhc---CeEEEECCCCCCC-------C
Confidence 38999999999999999999887655433 222211 11111212 3788999997621 0
Q ss_pred CCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCCC---CCccCCCCCccc--eEEeecCCCHHHHHHHHHHHhccCCCC
Q 004267 597 AGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDI---IDPALLRPGRLD--QLIYIPLPDEDSRHQIFKACLRKSPVS 671 (764)
Q Consensus 597 ~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~---ld~allrpgRf~--~~i~~~~p~~~~r~~Il~~~~~~~~~~ 671 (764)
. .+|...++.....++.+||+++..|.. ..|.+.+ ||. .++.+.+|+.++|.+|++.+++..++.
T Consensus 103 -----~---~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~ 172 (226)
T PRK09087 103 -----E---TGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQLY 172 (226)
T ss_pred -----H---HHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcCCC
Confidence 1 123333333334455677777765553 3577776 885 789999999999999999999776554
Q ss_pred C-cccHHHHHHHCC
Q 004267 672 K-DVDLRALAKYTQ 684 (764)
Q Consensus 672 ~-~~~l~~la~~~~ 684 (764)
- +.-++.|++...
T Consensus 173 l~~ev~~~La~~~~ 186 (226)
T PRK09087 173 VDPHVVYYLVSRME 186 (226)
T ss_pred CCHHHHHHHHHHhh
Confidence 3 334667777765
No 267
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.05 E-value=5.9e-09 Score=117.67 Aligned_cols=185 Identities=20% Similarity=0.293 Sum_probs=120.5
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCe-----------
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 269 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~----------- 269 (764)
...+-+|+++.|.+..++.++..+... ..+..+||+||+|+||||+|+.+|..+++.
T Consensus 9 kyRP~~f~diiGq~~i~~~L~~~i~~~------------~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c 76 (486)
T PRK14953 9 KYRPKFFKEVIGQEIVVRILKNAVKLQ------------RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKC 76 (486)
T ss_pred hhCCCcHHHccChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCcc
Confidence 345678999999999999998888641 123458999999999999999999988631
Q ss_pred -------------EEEEechhhhhhccchhHHHHHHHHHHHHh----cCCeEEEEccccccCCCCCCCchHHHHHHHHHH
Q 004267 270 -------------FFCINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 332 (764)
Q Consensus 270 -------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L 332 (764)
++.+++. ....-..++.+.+.+.. ....|++|||+|.+.. ...+.|
T Consensus 77 ~nc~~i~~g~~~d~~eidaa------s~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~-----------~a~naL 139 (486)
T PRK14953 77 ENCVEIDKGSFPDLIEIDAA------SNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTK-----------EAFNAL 139 (486)
T ss_pred HHHHHHhcCCCCcEEEEeCc------cCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCH-----------HHHHHH
Confidence 1112111 00112335555544432 3456999999997742 123567
Q ss_pred HHHhhcccCCCeEEEEEecCCCCCCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCC-CchhhhHHhhhcCCCc
Q 004267 333 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYV 411 (764)
Q Consensus 333 l~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~~ 411 (764)
+..++... ..+++|.+|+.++.+.+.+++ |+ ..+.+..|+..+....+...++...+. ++..+..++..+.|-
T Consensus 140 Lk~LEepp--~~~v~Il~tt~~~kl~~tI~S--Rc-~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G~- 213 (486)
T PRK14953 140 LKTLEEPP--PRTIFILCTTEYDKIPPTILS--RC-QRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGG- 213 (486)
T ss_pred HHHHhcCC--CCeEEEEEECCHHHHHHHHHH--hc-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-
Confidence 77776543 245555566777888888876 55 468899999999888888776654433 233466777766653
Q ss_pred hHHHHHHHH
Q 004267 412 GADLAALCT 420 (764)
Q Consensus 412 ~~dl~~l~~ 420 (764)
.+++..++.
T Consensus 214 lr~al~~Ld 222 (486)
T PRK14953 214 MRDAASLLD 222 (486)
T ss_pred HHHHHHHHH
Confidence 333334433
No 268
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.04 E-value=1.9e-09 Score=116.72 Aligned_cols=175 Identities=19% Similarity=0.316 Sum_probs=123.6
Q ss_pred CcceeeeCCCCCChhHHHHHHHHHh-----CCeeEEEecccchhcccCcchHHHHHHHHHHhhCCCeEEEEecccchhhc
Q 004267 515 SKGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQ 589 (764)
Q Consensus 515 ~~gill~GppGtGKT~lak~lA~~~-----~~~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~ 589 (764)
..-++||||.|+|||+|++|++++. +..++.+...++.+.++-....+--+-|++-+ .-.+++||+|+.+.++
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk 190 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGK 190 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCC
Confidence 3449999999999999999999975 34678888888777666554444455677766 4469999999999764
Q ss_pred cCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCCCC---CccCCCCCccc--eEEeecCCCHHHHHHHHHHH
Q 004267 590 RGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDII---DPALLRPGRLD--QLIYIPLPDEDSRHQIFKAC 664 (764)
Q Consensus 590 r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~l---d~allrpgRf~--~~i~~~~p~~~~r~~Il~~~ 664 (764)
. +.-.+|...+..+...++.+|+.+...|..+ +|.|.+ ||. .++.+.+||.+.|..|++..
T Consensus 191 ~------------~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kk 256 (408)
T COG0593 191 E------------RTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKK 256 (408)
T ss_pred h------------hHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHH
Confidence 2 2233444444444445556666666667655 477776 876 67778899999999999998
Q ss_pred hccCCCCCccc-HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Q 004267 665 LRKSPVSKDVD-LRALAKYTQGFSGADITEICQRACKYAIREN 706 (764)
Q Consensus 665 ~~~~~~~~~~~-l~~la~~~~g~sg~di~~~~~~a~~~a~~~~ 706 (764)
....++.-+.+ +..+|.... -+.+++..++......|....
T Consensus 257 a~~~~~~i~~ev~~~la~~~~-~nvReLegaL~~l~~~a~~~~ 298 (408)
T COG0593 257 AEDRGIEIPDEVLEFLAKRLD-RNVRELEGALNRLDAFALFTK 298 (408)
T ss_pred HHhcCCCCCHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHhcC
Confidence 87666654334 456666654 477888888877776665543
No 269
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.04 E-value=2.4e-09 Score=115.96 Aligned_cols=190 Identities=19% Similarity=0.191 Sum_probs=120.8
Q ss_pred CccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCC-------eeEEE---
Q 004267 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA-------NFISV--- 546 (764)
Q Consensus 477 ~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~-------~~i~v--- 546 (764)
...++++.|++.+++.|...+.. | +.+..+||+||+|+|||++|+.+|..+.. +....
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~-----------g-rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~ 86 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYRE-----------G-KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPD 86 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHc-----------C-CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCC
Confidence 34578899999999888766442 1 23446999999999999999999997643 11000
Q ss_pred -e-----------cccch--h-cc-c--C-----cchHHHHHHHHHH----hhCCCeEEEEecccchhhccCCCCCCCCc
Q 004267 547 -K-----------GPELL--T-MW-F--G-----ESEANVREIFDKA----RQSAPCVLFFDELDSIATQRGSSVGDAGG 599 (764)
Q Consensus 547 -~-----------~~~l~--~-~~-~--g-----~se~~i~~~f~~a----~~~~p~iifiDEid~l~~~r~~~~~~~~~ 599 (764)
. .+++. . .+ . | -+-..+|.+-+.. ......|++|||+|.+-
T Consensus 87 ~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~------------ 154 (351)
T PRK09112 87 PASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMN------------ 154 (351)
T ss_pred CCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcC------------
Confidence 0 01111 0 00 0 0 0123344444332 23456799999999973
Q ss_pred chHHHHHHHHHhhcCCCCCCcEEEEecCCCCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCCCcccHHHH
Q 004267 600 AADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRAL 679 (764)
Q Consensus 600 ~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~l 679 (764)
....|.||..|+.. ..+.++|..|+.|+.+.|.+.+ |+ ..+.|++|+.++..++++......+++ +..+..+
T Consensus 155 --~~aanaLLk~LEEp--p~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~~~~-~~~~~~i 226 (351)
T PRK09112 155 --RNAANAILKTLEEP--PARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQGSD-GEITEAL 226 (351)
T ss_pred --HHHHHHHHHHHhcC--CCCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhcccCCC-HHHHHHH
Confidence 23457788888863 3345555556778888888876 88 599999999999999998743222221 2235666
Q ss_pred HHHCCCCCHHHHHHHHHHHH
Q 004267 680 AKYTQGFSGADITEICQRAC 699 (764)
Q Consensus 680 a~~~~g~sg~di~~~~~~a~ 699 (764)
++.+.| +.+...++.....
T Consensus 227 ~~~s~G-~pr~Al~ll~~~~ 245 (351)
T PRK09112 227 LQRSKG-SVRKALLLLNYGG 245 (351)
T ss_pred HHHcCC-CHHHHHHHHhcCc
Confidence 776665 5555555555444
No 270
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.04 E-value=5.8e-09 Score=117.04 Aligned_cols=175 Identities=20% Similarity=0.294 Sum_probs=117.6
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCe-----------
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 269 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~----------- 269 (764)
...+.+|+||.|.+..++.++..+... ..+..+||+||+|+|||++|+++|+.+...
T Consensus 10 kyRP~~~~diiGq~~~v~~L~~~i~~~------------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~ 77 (451)
T PRK06305 10 KYRPQTFSEILGQDAVVAVLKNALRFN------------RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQ 77 (451)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcc
Confidence 456778999999999999998887641 224569999999999999999999987432
Q ss_pred --------------EEEEechhhhhhccchhHHHHHHHHHHH----HhcCCeEEEEccccccCCCCCCCchHHHHHHHHH
Q 004267 270 --------------FFCINGPEIMSKLAGESESNLRKAFEEA----EKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQ 331 (764)
Q Consensus 270 --------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a----~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~ 331 (764)
++.+++... . .-..++.+.+.. ......|++|||+|.+.. ...+.
T Consensus 78 c~~C~~i~~~~~~d~~~i~g~~~----~--gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~-----------~~~n~ 140 (451)
T PRK06305 78 CASCKEISSGTSLDVLEIDGASH----R--GIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTK-----------EAFNS 140 (451)
T ss_pred cHHHHHHhcCCCCceEEeecccc----C--CHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCH-----------HHHHH
Confidence 233333211 0 112333333222 224567999999988742 13456
Q ss_pred HHHHhhcccCCCeEEEEEecCCCCCCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCC-CCchhhhHHhhhcCC
Q 004267 332 LLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDDVDLERIAKDTHG 409 (764)
Q Consensus 332 Ll~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l-~~~~~l~~la~~t~g 409 (764)
|+..++... ..+++|.+|+.+..+.+.+++ |+ ..+++..++.++-...+...++.... .++..+..++..+.|
T Consensus 141 LLk~lEep~--~~~~~Il~t~~~~kl~~tI~s--Rc-~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g 214 (451)
T PRK06305 141 LLKTLEEPP--QHVKFFLATTEIHKIPGTILS--RC-QKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQG 214 (451)
T ss_pred HHHHhhcCC--CCceEEEEeCChHhcchHHHH--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 777777643 356666677888888888887 66 46899999988877777665544332 233456777777765
No 271
>PRK05642 DNA replication initiation factor; Validated
Probab=99.04 E-value=6.7e-09 Score=106.70 Aligned_cols=147 Identities=18% Similarity=0.309 Sum_probs=100.7
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHh---CCeEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCC
Q 004267 242 PKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKRE 318 (764)
Q Consensus 242 ~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~ 318 (764)
...++|+||+|||||+|++++++++ +..++.++..++... ...+.+.... ..+|+|||++.+..+.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~--------~~~~~~~~~~--~d~LiiDDi~~~~~~~- 113 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR--------GPELLDNLEQ--YELVCLDDLDVIAGKA- 113 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh--------hHHHHHhhhh--CCEEEEechhhhcCCh-
Confidence 3679999999999999999998764 456777887766542 1223333332 2589999999875432
Q ss_pred CCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCC---ChhhhccCCc--ceEEEecCCChHHHHHHHHHHhcC--
Q 004267 319 KTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI---DPALRRFGRF--DREIDIGVPDEVGRLEVLRIHTKN-- 391 (764)
Q Consensus 319 ~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~l---d~al~r~~rf--~~~i~i~~p~~~~R~~il~~~~~~-- 391 (764)
.....|.++++.+..++..++++++..|..+ .+.|++ || ...+.+..|+.+.|.++++..+..
T Consensus 114 --------~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~~~~ 183 (234)
T PRK05642 114 --------DWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRASRRG 183 (234)
T ss_pred --------HHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHHHcC
Confidence 1224577777776666677888777766543 577877 65 466788999999999999855443
Q ss_pred CCCCCchhhhHHhhhcCCC
Q 004267 392 MKLSDDVDLERIAKDTHGY 410 (764)
Q Consensus 392 ~~l~~~~~l~~la~~t~g~ 410 (764)
+.+. +.-++.++++..+-
T Consensus 184 ~~l~-~ev~~~L~~~~~~d 201 (234)
T PRK05642 184 LHLT-DEVGHFILTRGTRS 201 (234)
T ss_pred CCCC-HHHHHHHHHhcCCC
Confidence 3333 34467777776653
No 272
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.04 E-value=7.1e-09 Score=118.82 Aligned_cols=186 Identities=19% Similarity=0.271 Sum_probs=124.4
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCe-----------
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 269 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~----------- 269 (764)
+..+-+|++|.|.+..++.++..+... ..+..+||+||+|+|||++|+++|+.+...
T Consensus 9 kyRP~~f~diiGqe~iv~~L~~~i~~~------------~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C 76 (563)
T PRK06647 9 KRRPRDFNSLEGQDFVVETLKHSIESN------------KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGEC 76 (563)
T ss_pred HhCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccc
Confidence 356678999999999999998888641 124569999999999999999999988642
Q ss_pred -------------EEEEechhhhhhccchhHHHHHHHHHHHH----hcCCeEEEEccccccCCCCCCCchHHHHHHHHHH
Q 004267 270 -------------FFCINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 332 (764)
Q Consensus 270 -------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L 332 (764)
++.+++.. ...-..++.+.+.+. .....+++|||+|.+.. ...+.|
T Consensus 77 ~~C~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~-----------~a~naL 139 (563)
T PRK06647 77 SSCKSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSN-----------SAFNAL 139 (563)
T ss_pred hHHHHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCH-----------HHHHHH
Confidence 22222211 011234555554333 34557999999998732 234567
Q ss_pred HHHhhcccCCCeEEEEEecCCCCCCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCC-CchhhhHHhhhcCCCc
Q 004267 333 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYV 411 (764)
Q Consensus 333 l~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~~ 411 (764)
+..++.. ...+++|.+|+.+..+.+.+++ |+ ..+++..++.++..+.++..+....+. ++..+..++..+.| .
T Consensus 140 LK~LEep--p~~~vfI~~tte~~kL~~tI~S--Rc-~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G-d 213 (563)
T PRK06647 140 LKTIEEP--PPYIVFIFATTEVHKLPATIKS--RC-QHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG-S 213 (563)
T ss_pred HHhhccC--CCCEEEEEecCChHHhHHHHHH--hc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 7777653 3466777777778889888887 66 357888898888888887665443332 34457777777776 3
Q ss_pred hHHHHHHHHH
Q 004267 412 GADLAALCTE 421 (764)
Q Consensus 412 ~~dl~~l~~~ 421 (764)
.+++..++..
T Consensus 214 lR~alslLdk 223 (563)
T PRK06647 214 VRDAYTLFDQ 223 (563)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 273
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=1.1e-09 Score=126.49 Aligned_cols=144 Identities=24% Similarity=0.382 Sum_probs=110.1
Q ss_pred CCCcceeeeCCCCCChhHHHHHHHHHh----------CCeeEEEecccch--hcccCcchHHHHHHHHHHhhCCCeEEEE
Q 004267 513 SPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISVKGPELL--TMWFGESEANVREIFDKARQSAPCVLFF 580 (764)
Q Consensus 513 ~~~~gill~GppGtGKT~lak~lA~~~----------~~~~i~v~~~~l~--~~~~g~se~~i~~~f~~a~~~~p~iifi 580 (764)
+...+-+|+|+||+|||.++..+|... +...+.++...+. .+|-|+.|..++.+.+...+..+.|+||
T Consensus 189 R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFI 268 (786)
T COG0542 189 RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFI 268 (786)
T ss_pred cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEE
Confidence 444568999999999999999999863 4567777777665 5899999999999999999988999999
Q ss_pred ecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCC-----CCCccCCCCCccceEEeecCCCHH
Q 004267 581 DELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPD-----IIDPALLRPGRLDQLIYIPLPDED 655 (764)
Q Consensus 581 DEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~-----~ld~allrpgRf~~~i~~~~p~~~ 655 (764)
|||+.+.+..+..++ +-.+ -|-|.-.| ..+.+-+||||..-+ .-|+||-| ||. .|++.-|+.+
T Consensus 269 DEiHtiVGAG~~~G~-a~DA----aNiLKPaL----ARGeL~~IGATT~~EYRk~iEKD~AL~R--RFQ-~V~V~EPs~e 336 (786)
T COG0542 269 DEIHTIVGAGATEGG-AMDA----ANLLKPAL----ARGELRCIGATTLDEYRKYIEKDAALER--RFQ-KVLVDEPSVE 336 (786)
T ss_pred echhhhcCCCccccc-ccch----hhhhHHHH----hcCCeEEEEeccHHHHHHHhhhchHHHh--cCc-eeeCCCCCHH
Confidence 999999986543211 1112 22222222 345677888886432 56899999 997 8999999999
Q ss_pred HHHHHHHHHhccC
Q 004267 656 SRHQIFKACLRKS 668 (764)
Q Consensus 656 ~r~~Il~~~~~~~ 668 (764)
+-..|++-.-.++
T Consensus 337 ~ti~ILrGlk~~y 349 (786)
T COG0542 337 DTIAILRGLKERY 349 (786)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998766544
No 274
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=6.7e-09 Score=109.76 Aligned_cols=100 Identities=28% Similarity=0.469 Sum_probs=74.9
Q ss_pred cceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccch-hcccCcc-hHHHHHHHHHHhh----CCCeEEEEecccchhhc
Q 004267 516 KGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-TMWFGES-EANVREIFDKARQ----SAPCVLFFDELDSIATQ 589 (764)
Q Consensus 516 ~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~-~~~~g~s-e~~i~~~f~~a~~----~~p~iifiDEid~l~~~ 589 (764)
.++||.||+|+|||.||+.||+.++.||...++..|. ..|+|+- |.-|.++.+.|.. ..-.|+|+||+|.+...
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 4599999999999999999999999999999998775 5799987 4556777776532 23359999999999843
Q ss_pred cCCCCCCCCcchHHHHHHHHHhhcCC
Q 004267 590 RGSSVGDAGGAADRVLNQLLTEMDGM 615 (764)
Q Consensus 590 r~~~~~~~~~~~~~~~~~lL~~ld~~ 615 (764)
-.+-....+-.++-+-..||..++|-
T Consensus 307 ~~~i~~~RDVsGEGVQQaLLKllEGt 332 (564)
T KOG0745|consen 307 AESIHTSRDVSGEGVQQALLKLLEGT 332 (564)
T ss_pred CccccccccccchhHHHHHHHHhccc
Confidence 22211111223456788899998873
No 275
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.02 E-value=1.4e-09 Score=125.99 Aligned_cols=87 Identities=26% Similarity=0.421 Sum_probs=58.9
Q ss_pred eeccCccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCe----eEEEec
Q 004267 473 VEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN----FISVKG 548 (764)
Q Consensus 473 ~~~~~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~----~i~v~~ 548 (764)
+..|..-|+++.|++++++.+...+.. +.+++|+||||||||++++++|..+... ++.+..
T Consensus 10 ~~~~~~~~~~viG~~~a~~~l~~a~~~---------------~~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~n 74 (608)
T TIGR00764 10 IPVPERLIDQVIGQEEAVEIIKKAAKQ---------------KRNVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYPN 74 (608)
T ss_pred cCcchhhHhhccCHHHHHHHHHHHHHc---------------CCCEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEeC
Confidence 345667789999999998877654431 2479999999999999999999988654 223332
Q ss_pred cc------chhcccCcchHHHHHHHHHHhhCC
Q 004267 549 PE------LLTMWFGESEANVREIFDKARQSA 574 (764)
Q Consensus 549 ~~------l~~~~~g~se~~i~~~f~~a~~~~ 574 (764)
+. +...+.|.+++.++..|..|++.+
T Consensus 75 ~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~ 106 (608)
T TIGR00764 75 PEDPNMPRIVEVPAGEGREIVEDYKKKAFKQP 106 (608)
T ss_pred CCCCchHHHHHHHHhhchHHHHHHHHHhhccc
Confidence 22 223445666666666665554443
No 276
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.02 E-value=6.7e-10 Score=117.09 Aligned_cols=137 Identities=14% Similarity=0.181 Sum_probs=95.0
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhhhh--ccchhHHH----------HHHHHHHHHhcCCeEEEE
Q 004267 240 KPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSK--LAGESESN----------LRKAFEEAEKNAPSIIFI 307 (764)
Q Consensus 240 ~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~--~~g~~~~~----------l~~vf~~a~~~~p~il~i 307 (764)
..+++|+|.||||||||++++.+|..++.+++.+++...... ..|...-. ....+-.|. ..+.++++
T Consensus 62 ~~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~-~~g~illl 140 (327)
T TIGR01650 62 AYDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWAL-QHNVALCF 140 (327)
T ss_pred hcCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHH-hCCeEEEe
Confidence 346789999999999999999999999999999987655433 33321100 011223333 34678999
Q ss_pred ccccccCCCCCCCchHHHHHHHHHHHHHhhc------------ccCCCeEEEEEecCCCC------------CCChhhhc
Q 004267 308 DEIDSIAPKREKTHGEVERRIVSQLLTLMDG------------LKSRAHVIVIGATNRPN------------SIDPALRR 363 (764)
Q Consensus 308 DEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~------------~~~~~~v~vI~atn~~~------------~ld~al~r 363 (764)
||++..-+. +...|..+++. +...+.+.||+|+|... .+++++..
T Consensus 141 DEin~a~p~-----------~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD 209 (327)
T TIGR01650 141 DEYDAGRPD-----------VMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMD 209 (327)
T ss_pred chhhccCHH-----------HHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh
Confidence 999977432 22334444431 22345788999999854 34777776
Q ss_pred cCCcceEEEecCCChHHHHHHHHHHhc
Q 004267 364 FGRFDREIDIGVPDEVGRLEVLRIHTK 390 (764)
Q Consensus 364 ~~rf~~~i~i~~p~~~~R~~il~~~~~ 390 (764)
||...+.++.|+.+.-.+|+.....
T Consensus 210 --RF~i~~~~~Yp~~e~E~~Il~~~~~ 234 (327)
T TIGR01650 210 --RWSIVTTLNYLEHDNEAAIVLAKAK 234 (327)
T ss_pred --heeeEeeCCCCCHHHHHHHHHhhcc
Confidence 9988889999999999999876543
No 277
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.02 E-value=5.9e-09 Score=120.54 Aligned_cols=176 Identities=20% Similarity=0.306 Sum_probs=118.9
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCe-----------
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 269 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~----------- 269 (764)
+..+-+|++|.|.++.++.|+..+... ..+..+||+||+|+||||+++++|+.+++.
T Consensus 9 k~RP~~f~~iiGq~~v~~~L~~~i~~~------------~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c 76 (576)
T PRK14965 9 KYRPQTFSDLTGQEHVSRTLQNAIDTG------------RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVC 76 (576)
T ss_pred HhCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCcc
Confidence 356678999999999999998887641 224568999999999999999999997632
Q ss_pred -------------EEEEechhhhhhccchhHHHHHHHHHHHHh----cCCeEEEEccccccCCCCCCCchHHHHHHHHHH
Q 004267 270 -------------FFCINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 332 (764)
Q Consensus 270 -------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L 332 (764)
++.+++.. ...-..++.+.+.+.. ....|++|||+|.+.. ...+.|
T Consensus 77 ~~c~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~-----------~a~naL 139 (576)
T PRK14965 77 PPCVEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLST-----------NAFNAL 139 (576)
T ss_pred HHHHHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCH-----------HHHHHH
Confidence 23333321 1122346666655542 2336999999997742 234677
Q ss_pred HHHhhcccCCCeEEEEEecCCCCCCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCC-CCchhhhHHhhhcCCC
Q 004267 333 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDDVDLERIAKDTHGY 410 (764)
Q Consensus 333 l~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l-~~~~~l~~la~~t~g~ 410 (764)
+..|+... ..+++|.+|+.++.+.+.+++ |+ ..+++..++..+-...+...++...+ .++..+..++..+.|-
T Consensus 140 Lk~LEepp--~~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G~ 213 (576)
T PRK14965 140 LKTLEEPP--PHVKFIFATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGS 213 (576)
T ss_pred HHHHHcCC--CCeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCC
Confidence 87887643 366777778888899988876 55 45678778777766666554443332 2334567777777763
No 278
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.01 E-value=5.7e-09 Score=117.03 Aligned_cols=168 Identities=17% Similarity=0.251 Sum_probs=108.6
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh-----CCeEEEEechhhhhhccchhHHHHHHHHHHHH--hcCCeEEEEccccccCC
Q 004267 243 KGILLYGPPGSGKTLIARAVANET-----GAFFFCINGPEIMSKLAGESESNLRKAFEEAE--KNAPSIIFIDEIDSIAP 315 (764)
Q Consensus 243 ~~vLL~GppGtGKTtLar~la~~l-----~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~--~~~p~il~iDEid~l~~ 315 (764)
.+++|||++|+|||+|++++++++ +..++.+++.++...+........ ..++... -..+.+|+|||++++..
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~-~~~~~~~~~~~~~dvLiIDDiq~l~~ 220 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTH-KEIEQFKNEICQNDVLIIDDVQFLSY 220 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhh-hHHHHHHHHhccCCEEEEeccccccC
Confidence 569999999999999999999865 356788888887765543322110 1122221 13467999999998854
Q ss_pred CCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCC---CChhhhccCCcc--eEEEecCCChHHHHHHHHHHhc
Q 004267 316 KREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNS---IDPALRRFGRFD--REIDIGVPDEVGRLEVLRIHTK 390 (764)
Q Consensus 316 ~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~---ld~al~r~~rf~--~~i~i~~p~~~~R~~il~~~~~ 390 (764)
+. .....|..+++.+......+|+.+...|.. +++.+++ ||. ..+.+..|+.++|.+|++..+.
T Consensus 221 k~---------~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~~~~~ 289 (450)
T PRK14087 221 KE---------KTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIKKEIK 289 (450)
T ss_pred CH---------HHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHHHHHH
Confidence 32 123456666666555555455544445543 4677777 664 5677899999999999998876
Q ss_pred CCC---CCCchhhhHHhhhcCCCchHHHHHHHHHHH
Q 004267 391 NMK---LSDDVDLERIAKDTHGYVGADLAALCTEAA 423 (764)
Q Consensus 391 ~~~---l~~~~~l~~la~~t~g~~~~dl~~l~~~a~ 423 (764)
... ..++..+..++....|- .+.+..++....
T Consensus 290 ~~gl~~~l~~evl~~Ia~~~~gd-~R~L~gaL~~l~ 324 (450)
T PRK14087 290 NQNIKQEVTEEAINFISNYYSDD-VRKIKGSVSRLN 324 (450)
T ss_pred hcCCCCCCCHHHHHHHHHccCCC-HHHHHHHHHHHH
Confidence 432 23344577888877764 344555555444
No 279
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.00 E-value=1.8e-09 Score=126.37 Aligned_cols=155 Identities=24% Similarity=0.356 Sum_probs=101.9
Q ss_pred cccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHh-------------------
Q 004267 479 SWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC------------------- 539 (764)
Q Consensus 479 ~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~------------------- 539 (764)
.|.+|.|++.++..|.-....+ ...|+||.|++|||||++|++++..+
T Consensus 2 pf~~ivGq~~~~~al~~~av~~-------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~ 68 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDP-------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPE 68 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCC-------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcc
Confidence 4778999999987765332211 12469999999999999999999887
Q ss_pred ----------------CCeeEEEecccchhcccCcc--hHHHH--------HHHHHHhhCCCeEEEEecccchhhccCCC
Q 004267 540 ----------------QANFISVKGPELLTMWFGES--EANVR--------EIFDKARQSAPCVLFFDELDSIATQRGSS 593 (764)
Q Consensus 540 ----------------~~~~i~v~~~~l~~~~~g~s--e~~i~--------~~f~~a~~~~p~iifiDEid~l~~~r~~~ 593 (764)
..+|+.+...-.....+|.- ++.++ .++..| .-.++|+|||+.+.
T Consensus 69 ~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A---~~GiL~lDEi~~l~------ 139 (633)
T TIGR02442 69 EWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEA---HRGILYIDEVNLLD------ 139 (633)
T ss_pred ccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeec---CCCeEEeChhhhCC------
Confidence 24565554332222233321 11110 011111 22499999999864
Q ss_pred CCCCCcchHHHHHHHHHhhcCCC-----------CCCcEEEEecCCCCC-CCCccCCCCCccceEEeecCC-CHHHHHHH
Q 004267 594 VGDAGGAADRVLNQLLTEMDGMS-----------AKKTVFIIGATNRPD-IIDPALLRPGRLDQLIYIPLP-DEDSRHQI 660 (764)
Q Consensus 594 ~~~~~~~~~~~~~~lL~~ld~~~-----------~~~~v~vi~aTn~~~-~ld~allrpgRf~~~i~~~~p-~~~~r~~I 660 (764)
..+.+.||..|+... ...++.+|+|+|..+ .+.++|+. ||+..|.++.| +.+++.+|
T Consensus 140 --------~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~i 209 (633)
T TIGR02442 140 --------DHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEI 209 (633)
T ss_pred --------HHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHH
Confidence 345677777775321 124688999999543 57788888 99999999877 46888888
Q ss_pred HHHHh
Q 004267 661 FKACL 665 (764)
Q Consensus 661 l~~~~ 665 (764)
++..+
T Consensus 210 l~~~~ 214 (633)
T TIGR02442 210 IRRRL 214 (633)
T ss_pred HHHHH
Confidence 87654
No 280
>PHA02244 ATPase-like protein
Probab=99.00 E-value=1.3e-08 Score=108.53 Aligned_cols=122 Identities=26% Similarity=0.353 Sum_probs=79.4
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhhhhccc---hhHH-HHHHHHHHHHhcCCeEEEEccccccCCC
Q 004267 241 PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAG---ESES-NLRKAFEEAEKNAPSIIFIDEIDSIAPK 316 (764)
Q Consensus 241 ~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~~g---~~~~-~l~~vf~~a~~~~p~il~iDEid~l~~~ 316 (764)
.+.+|+|+||||||||+||+++|..++.+++.+++..-.....| .... .-..++... ....+++|||++.+.+.
T Consensus 118 ~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~--~~GgvLiLDEId~a~p~ 195 (383)
T PHA02244 118 ANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAF--KKGGLFFIDEIDASIPE 195 (383)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHh--hcCCEEEEeCcCcCCHH
Confidence 35689999999999999999999999999999885311111111 0000 111222222 34579999999976432
Q ss_pred CCCCchHHHHHHHHHHHHHhh---------cccCCCeEEEEEecCCC-----------CCCChhhhccCCcceEEEecCC
Q 004267 317 REKTHGEVERRIVSQLLTLMD---------GLKSRAHVIVIGATNRP-----------NSIDPALRRFGRFDREIDIGVP 376 (764)
Q Consensus 317 ~~~~~~~~~~~v~~~Ll~~ld---------~~~~~~~v~vI~atn~~-----------~~ld~al~r~~rf~~~i~i~~p 376 (764)
+...|...++ ......++.+|+|+|.+ ..++++++. || ..+++..|
T Consensus 196 -----------vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RF-v~I~~dyp 261 (383)
T PHA02244 196 -----------ALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RF-APIEFDYD 261 (383)
T ss_pred -----------HHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hc-EEeeCCCC
Confidence 2233444443 12234678999999973 467888887 88 46899998
Q ss_pred Ch
Q 004267 377 DE 378 (764)
Q Consensus 377 ~~ 378 (764)
..
T Consensus 262 ~~ 263 (383)
T PHA02244 262 EK 263 (383)
T ss_pred cH
Confidence 74
No 281
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.99 E-value=1.9e-09 Score=100.62 Aligned_cols=128 Identities=38% Similarity=0.516 Sum_probs=80.8
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCe---EEEEechhhhhh--------------ccchhHHHHHHHHHHHHhcCCeE
Q 004267 242 PKGILLYGPPGSGKTLIARAVANETGAF---FFCINGPEIMSK--------------LAGESESNLRKAFEEAEKNAPSI 304 (764)
Q Consensus 242 ~~~vLL~GppGtGKTtLar~la~~l~~~---~i~v~~~~l~~~--------------~~g~~~~~l~~vf~~a~~~~p~i 304 (764)
+..++|+|||||||||+++.++..+... ++.+++...... .........+.+++.+....+.+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 4689999999999999999999998765 677776543221 12234556778888888888899
Q ss_pred EEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCC-CCCCChhhhccCCcceEEEecCC
Q 004267 305 IFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNR-PNSIDPALRRFGRFDREIDIGVP 376 (764)
Q Consensus 305 l~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~-~~~ld~al~r~~rf~~~i~i~~p 376 (764)
+++||++.+........ ....................+|+++|. ....+..+++ |++..+.+..+
T Consensus 82 iiiDei~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 147 (148)
T smart00382 82 LILDEITSLLDAEQEAL-----LLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR--RFDRRIVLLLI 147 (148)
T ss_pred EEEECCcccCCHHHHHH-----HHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh--ccceEEEecCC
Confidence 99999998865421100 000000001111222346677778885 3344455554 77777776543
No 282
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.99 E-value=6.2e-09 Score=113.26 Aligned_cols=30 Identities=33% Similarity=0.525 Sum_probs=26.2
Q ss_pred hCCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 004267 237 IGVKPPKGILLYGPPGSGKTLIARAVANET 266 (764)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtLar~la~~l 266 (764)
+.+.+++.+.|+||+||||||++++|++..
T Consensus 96 ~El~~g~rygLiG~nG~Gkst~L~~i~~~e 125 (614)
T KOG0927|consen 96 LELNRGRRYGLIGPNGSGKSTFLRAIAGRE 125 (614)
T ss_pred EEecCCceEEEEcCCCCcHhHHHHHHhcCC
Confidence 456788999999999999999999998753
No 283
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=2.8e-08 Score=108.04 Aligned_cols=200 Identities=23% Similarity=0.343 Sum_probs=127.1
Q ss_pred cccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCe-----EEEEechhhhhhc-
Q 004267 209 DVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF-----FFCINGPEIMSKL- 282 (764)
Q Consensus 209 ~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~-----~i~v~~~~l~~~~- 282 (764)
.+.+-+.+++++..++.-.++. ..|.++++|||||||||+.++.++.++... ++.|||....+.+
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~~---------~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~ 88 (366)
T COG1474 18 ELPHREEEINQLASFLAPALRG---------ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQ 88 (366)
T ss_pred cccccHHHHHHHHHHHHHHhcC---------CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHH
Confidence 4888899999998776543322 345569999999999999999999987543 7889986542211
Q ss_pred --------------cchhH-HHHHHHHHHHHh-cCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEE
Q 004267 283 --------------AGESE-SNLRKAFEEAEK-NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVI 346 (764)
Q Consensus 283 --------------~g~~~-~~l~~vf~~a~~-~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~ 346 (764)
.|.+. +.+..+++.... ....|+++||+|.|..+.+ .++-.|....... ..++.
T Consensus 89 i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~--------~~LY~L~r~~~~~--~~~v~ 158 (366)
T COG1474 89 VLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG--------EVLYSLLRAPGEN--KVKVS 158 (366)
T ss_pred HHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc--------hHHHHHHhhcccc--ceeEE
Confidence 11111 223333443333 3456889999999987654 2344444444444 45788
Q ss_pred EEEecCCCC---CCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCC----CCCCchhhhHHh---hhcCCCchHHHH
Q 004267 347 VIGATNRPN---SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNM----KLSDDVDLERIA---KDTHGYVGADLA 416 (764)
Q Consensus 347 vI~atn~~~---~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~----~l~~~~~l~~la---~~t~g~~~~dl~ 416 (764)
+|+.+|..+ .+|+.+.+.... .+|.|++.+.++-..|+....+.. .+.++ -++.+| ...+| ..+-..
T Consensus 159 vi~i~n~~~~~~~ld~rv~s~l~~-~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~-vl~lia~~~a~~~G-DAR~ai 235 (366)
T COG1474 159 IIAVSNDDKFLDYLDPRVKSSLGP-SEIVFPPYTAEELYDILRERVEEGFSAGVIDDD-VLKLIAALVAAESG-DARKAI 235 (366)
T ss_pred EEEEeccHHHHHHhhhhhhhccCc-ceeeeCCCCHHHHHHHHHHHHHhhccCCCcCcc-HHHHHHHHHHHcCc-cHHHHH
Confidence 999999764 667877763333 458999999999999998765432 22222 233333 33444 233334
Q ss_pred HHHHHHHHHHHHhh
Q 004267 417 ALCTEAALQCIREK 430 (764)
Q Consensus 417 ~l~~~a~~~~~~~~ 430 (764)
.+|+.|+..+-++.
T Consensus 236 dilr~A~eiAe~~~ 249 (366)
T COG1474 236 DILRRAGEIAEREG 249 (366)
T ss_pred HHHHHHHHHHHhhC
Confidence 55666665554443
No 284
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.97 E-value=2.7e-08 Score=117.79 Aligned_cols=136 Identities=22% Similarity=0.270 Sum_probs=86.4
Q ss_pred CCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccc------hhccc-CcchH---HHHHHHHHHhhCCCeEEEEe
Q 004267 512 MSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL------LTMWF-GESEA---NVREIFDKARQSAPCVLFFD 581 (764)
Q Consensus 512 ~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l------~~~~~-g~se~---~i~~~f~~a~~~~p~iifiD 581 (764)
++..+++||.|.||+|||+|..++|++.|...+.|+-++- ++.++ ++... -...-|-.|-... .-+++|
T Consensus 1540 mqv~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G-~WVlLD 1618 (4600)
T COG5271 1540 MQVGKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDG-GWVLLD 1618 (4600)
T ss_pred HhcCCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcC-CEEEee
Confidence 3456789999999999999999999999999999987643 22221 11000 0112233332222 378899
Q ss_pred cccchhhccCCCCCCCCcchHHHHHHHHHhhcCC------------CCCCcEEEEecCCCC------CCCCccCCCCCcc
Q 004267 582 ELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGM------------SAKKTVFIIGATNRP------DIIDPALLRPGRL 643 (764)
Q Consensus 582 Eid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~------------~~~~~v~vi~aTn~~------~~ld~allrpgRf 643 (764)
|+.- ++..++.-|-.-||.- .-..+..|+||-|.- ..|+..++. ||
T Consensus 1619 EiNL--------------aSQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n--RF 1682 (4600)
T COG5271 1619 EINL--------------ASQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN--RF 1682 (4600)
T ss_pred hhhh--------------hHHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh--hh
Confidence 9864 2233444443333321 123467788888864 367888887 99
Q ss_pred ceEEeecCCCHHHHHHHHHHHh
Q 004267 644 DQLIYIPLPDEDSRHQIFKACL 665 (764)
Q Consensus 644 ~~~i~~~~p~~~~r~~Il~~~~ 665 (764)
. ++++...+.+....|.....
T Consensus 1683 s-vV~~d~lt~dDi~~Ia~~~y 1703 (4600)
T COG5271 1683 S-VVKMDGLTTDDITHIANKMY 1703 (4600)
T ss_pred h-eEEecccccchHHHHHHhhC
Confidence 7 77777777766666665554
No 285
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.96 E-value=1.7e-08 Score=116.39 Aligned_cols=182 Identities=18% Similarity=0.239 Sum_probs=114.7
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEE---------
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFF--------- 271 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i--------- 271 (764)
...+.+|++|.|.+..++.|+.++... .-+..+||+||+||||||+|+++|+.+.+..-
T Consensus 9 kyRP~~f~eivGQe~i~~~L~~~i~~~------------ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~ 76 (620)
T PRK14954 9 KYRPSKFADITAQEHITHTIQNSLRMD------------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQE 76 (620)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccc
Confidence 456778999999999999998877541 22446999999999999999999999865210
Q ss_pred --E--Eech---hhh-------hhccc---hhHHHHHHHHHHH----HhcCCeEEEEccccccCCCCCCCchHHHHHHHH
Q 004267 272 --C--INGP---EIM-------SKLAG---ESESNLRKAFEEA----EKNAPSIIFIDEIDSIAPKREKTHGEVERRIVS 330 (764)
Q Consensus 272 --~--v~~~---~l~-------~~~~g---~~~~~l~~vf~~a----~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~ 330 (764)
. -.|. .+. ..+.+ ..-..++.+.+.+ ......+++|||+|.+.. ...+
T Consensus 77 ~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~-----------~a~n 145 (620)
T PRK14954 77 VTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLST-----------AAFN 145 (620)
T ss_pred cCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH-----------HHHH
Confidence 0 0000 000 00011 1123455554444 223456999999988742 1235
Q ss_pred HHHHHhhcccCCCeEEEEEecCCCCCCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCC-CCchhhhHHhhhcCC
Q 004267 331 QLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDDVDLERIAKDTHG 409 (764)
Q Consensus 331 ~Ll~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l-~~~~~l~~la~~t~g 409 (764)
.|+..|+.... .+++|.+|+.+..+-+.+++ |. ..+++..++..+-...+...++.... .++..+..++..+.|
T Consensus 146 aLLK~LEePp~--~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~G 220 (620)
T PRK14954 146 AFLKTLEEPPP--HAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQG 220 (620)
T ss_pred HHHHHHhCCCC--CeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC
Confidence 67777766433 44555556667888888876 44 56888888887766666654443222 233456677777766
Q ss_pred C
Q 004267 410 Y 410 (764)
Q Consensus 410 ~ 410 (764)
.
T Consensus 221 d 221 (620)
T PRK14954 221 S 221 (620)
T ss_pred C
Confidence 3
No 286
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.96 E-value=2.5e-08 Score=114.85 Aligned_cols=191 Identities=20% Similarity=0.206 Sum_probs=124.1
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEe-c----
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCIN-G---- 275 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~-~---- 275 (764)
+..+-+|+++.|.+..++.|..++... ..+..+||+||+|+||||+|+++|+.+++.....+ +
T Consensus 17 KyRP~~f~dliGq~~~v~~L~~~~~~g------------ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~ 84 (598)
T PRK09111 17 KYRPQTFDDLIGQEAMVRTLTNAFETG------------RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID 84 (598)
T ss_pred hhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc
Confidence 456678999999999999998887641 23557999999999999999999999865321111 0
Q ss_pred --------hhhhhh----------ccchhHHHHHHHHHHHHh----cCCeEEEEccccccCCCCCCCchHHHHHHHHHHH
Q 004267 276 --------PEIMSK----------LAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLL 333 (764)
Q Consensus 276 --------~~l~~~----------~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll 333 (764)
..+... .....-..++.+++.+.. ....|+||||+|.+.. ...+.|+
T Consensus 85 ~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~-----------~a~naLL 153 (598)
T PRK09111 85 LCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLST-----------AAFNALL 153 (598)
T ss_pred cCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCH-----------HHHHHHH
Confidence 001000 000123456777766543 2356999999998742 2346677
Q ss_pred HHhhcccCCCeEEEEEecCCCCCCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCC-CchhhhHHhhhcCCCch
Q 004267 334 TLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVG 412 (764)
Q Consensus 334 ~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~~~ 412 (764)
..|+.... .+++|.+|+.++.+.+.+++ |+ ..+++..++.++-...++..++..... ++..+..++..+.|. .
T Consensus 154 KtLEePp~--~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~Gd-l 227 (598)
T PRK09111 154 KTLEEPPP--HVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEGS-V 227 (598)
T ss_pred HHHHhCCC--CeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-H
Confidence 77776443 45555566777778788876 66 568999999888777777665543332 234466677777664 3
Q ss_pred HHHHHHHH
Q 004267 413 ADLAALCT 420 (764)
Q Consensus 413 ~dl~~l~~ 420 (764)
.++..++.
T Consensus 228 r~al~~Ld 235 (598)
T PRK09111 228 RDGLSLLD 235 (598)
T ss_pred HHHHHHHH
Confidence 34433333
No 287
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.96 E-value=2.5e-08 Score=115.71 Aligned_cols=177 Identities=19% Similarity=0.277 Sum_probs=118.3
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCe-----------
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 269 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~----------- 269 (764)
+..+-+|+++.|.+..++.|+.++... .-+..+||+||+|+|||++|+++|+.+.+.
T Consensus 9 kyRP~~f~~liGq~~i~~~L~~~l~~~------------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg 76 (620)
T PRK14948 9 KYRPQRFDELVGQEAIATTLKNALISN------------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCG 76 (620)
T ss_pred HhCCCcHhhccChHHHHHHHHHHHHcC------------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCc
Confidence 455678999999999999998888641 123479999999999999999999998652
Q ss_pred ---------------EEEEechhhhhhccchhHHHHHHHHHHHHh----cCCeEEEEccccccCCCCCCCchHHHHHHHH
Q 004267 270 ---------------FFCINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVS 330 (764)
Q Consensus 270 ---------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~ 330 (764)
++.++. .....-..++.++..+.. ....|+||||+|.+.. ...+
T Consensus 77 ~C~~C~~i~~g~h~D~~ei~~------~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~-----------~a~n 139 (620)
T PRK14948 77 KCELCRAIAAGNALDVIEIDA------ASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLST-----------AAFN 139 (620)
T ss_pred ccHHHHHHhcCCCccEEEEec------cccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCH-----------HHHH
Confidence 111211 112234567777766643 2346999999998732 2346
Q ss_pred HHHHHhhcccCCCeEEEEEecCCCCCCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCC-CCchhhhHHhhhcCC
Q 004267 331 QLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDDVDLERIAKDTHG 409 (764)
Q Consensus 331 ~Ll~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l-~~~~~l~~la~~t~g 409 (764)
.|+..|+... ..+++|++|+++..+-+.+++ |+ ..+++..+..++-...+...+..... .+...+..++..+.|
T Consensus 140 aLLK~LEePp--~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G 214 (620)
T PRK14948 140 ALLKTLEEPP--PRVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQG 214 (620)
T ss_pred HHHHHHhcCC--cCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 6777777533 356667777788888888887 65 55788777776655555544433222 122346777777766
Q ss_pred Cc
Q 004267 410 YV 411 (764)
Q Consensus 410 ~~ 411 (764)
-.
T Consensus 215 ~l 216 (620)
T PRK14948 215 GL 216 (620)
T ss_pred CH
Confidence 43
No 288
>PRK06620 hypothetical protein; Validated
Probab=98.96 E-value=5e-09 Score=105.89 Aligned_cols=133 Identities=16% Similarity=0.275 Sum_probs=90.1
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCch
Q 004267 243 KGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHG 322 (764)
Q Consensus 243 ~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~ 322 (764)
..++||||||||||+|++++++..+..++. .... . ...+ ...++++|||++.+.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~-----~------~~~~-----~~~d~lliDdi~~~~-------- 98 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFF-----N------EEIL-----EKYNAFIIEDIENWQ-------- 98 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhh-----c------hhHH-----hcCCEEEEeccccch--------
Confidence 679999999999999999999987754322 1100 0 0111 233689999999441
Q ss_pred HHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCC--CChhhhccCCcc--eEEEecCCChHHHHHHHHHHhcC--CCCCC
Q 004267 323 EVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNS--IDPALRRFGRFD--REIDIGVPDEVGRLEVLRIHTKN--MKLSD 396 (764)
Q Consensus 323 ~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~--ld~al~r~~rf~--~~i~i~~p~~~~R~~il~~~~~~--~~l~~ 396 (764)
. ..|..+++.+...+..++++++..|.. + +.|++ |+. ..+.+..|+.+.+..+++..... +.+.
T Consensus 99 ---~---~~lf~l~N~~~e~g~~ilits~~~p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~- 168 (214)
T PRK06620 99 ---E---PALLHIFNIINEKQKYLLLTSSDKSRNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVTIS- 168 (214)
T ss_pred ---H---HHHHHHHHHHHhcCCEEEEEcCCCccccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCC-
Confidence 0 245566666666667788887776654 4 77877 664 46899999999999999877653 3333
Q ss_pred chhhhHHhhhcCCCc
Q 004267 397 DVDLERIAKDTHGYV 411 (764)
Q Consensus 397 ~~~l~~la~~t~g~~ 411 (764)
+..++.++.+..+-.
T Consensus 169 ~ev~~~L~~~~~~d~ 183 (214)
T PRK06620 169 RQIIDFLLVNLPREY 183 (214)
T ss_pred HHHHHHHHHHccCCH
Confidence 334777887776543
No 289
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.96 E-value=8.1e-09 Score=114.61 Aligned_cols=176 Identities=18% Similarity=0.225 Sum_probs=112.1
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCe-----------
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 269 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~----------- 269 (764)
.+.+.+|++|.|.+..++.|+.++... ..+..+||+||||+||||+|+++|+.+.+.
T Consensus 9 k~RP~~~~eiiGq~~~~~~L~~~~~~~------------~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~ 76 (397)
T PRK14955 9 KYRPKKFADITAQEHITRTIQNSLRMG------------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQE 76 (397)
T ss_pred hcCCCcHhhccChHHHHHHHHHHHHhC------------CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCccccccc
Confidence 456778999999999999998887641 224569999999999999999999998652
Q ss_pred ---------------------EEEEechhhhhhccchhHHHHHHHHHHHH----hcCCeEEEEccccccCCCCCCCchHH
Q 004267 270 ---------------------FFCINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEV 324 (764)
Q Consensus 270 ---------------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~ 324 (764)
++.+++.. ...-..++.+.+.+. .....++||||+|.+..
T Consensus 77 ~~~~c~~c~~c~~~~~~~~~n~~~~~~~~------~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~--------- 141 (397)
T PRK14955 77 VTEPCGECESCRDFDAGTSLNISEFDAAS------NNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI--------- 141 (397)
T ss_pred CCCCCCCCHHHHHHhcCCCCCeEeecccc------cCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCH---------
Confidence 11111110 011244555544442 22346999999998742
Q ss_pred HHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCC-CCchhhhHH
Q 004267 325 ERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDDVDLERI 403 (764)
Q Consensus 325 ~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l-~~~~~l~~l 403 (764)
...+.|+..++... ...++|.+|+.+..+-+.+++ |. ..+++..++.++-...+...++.... .++..+..+
T Consensus 142 --~~~~~LLk~LEep~--~~t~~Il~t~~~~kl~~tl~s--R~-~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l 214 (397)
T PRK14955 142 --AAFNAFLKTLEEPP--PHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLI 214 (397)
T ss_pred --HHHHHHHHHHhcCC--CCeEEEEEeCChHHhHHHHHH--HH-HHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 12345666666433 244555556666777777776 44 35778888877766666655543332 233446677
Q ss_pred hhhcCCC
Q 004267 404 AKDTHGY 410 (764)
Q Consensus 404 a~~t~g~ 410 (764)
+..+.|.
T Consensus 215 ~~~s~g~ 221 (397)
T PRK14955 215 GRKAQGS 221 (397)
T ss_pred HHHcCCC
Confidence 7777653
No 290
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.96 E-value=2.5e-08 Score=112.55 Aligned_cols=188 Identities=19% Similarity=0.217 Sum_probs=123.9
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCC------------
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA------------ 268 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~------------ 268 (764)
+..+-+|+++.|.+..++.++..+... ..+..+||+||+|+|||++|+++|+.+..
T Consensus 7 KyRP~~fdeiiGqe~v~~~L~~~I~~g------------rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C 74 (535)
T PRK08451 7 KYRPKHFDELIGQESVSKTLSLALDNN------------RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTC 74 (535)
T ss_pred HHCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCccc
Confidence 456778999999999999998887641 23456799999999999999999998732
Q ss_pred ------------eEEEEechhhhhhccchhHHHHHHHHHHHHh----cCCeEEEEccccccCCCCCCCchHHHHHHHHHH
Q 004267 269 ------------FFFCINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 332 (764)
Q Consensus 269 ------------~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L 332 (764)
.++.+++.+- ..-..++.+.+.... ....|++|||+|.+.. ...+.|
T Consensus 75 ~~C~~~~~~~h~dv~eldaas~------~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~-----------~A~NAL 137 (535)
T PRK08451 75 IQCQSALENRHIDIIEMDAASN------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTK-----------EAFNAL 137 (535)
T ss_pred HHHHHHhhcCCCeEEEeccccc------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH-----------HHHHHH
Confidence 1223322110 112445665554321 2235999999987742 234667
Q ss_pred HHHhhcccCCCeEEEEEecCCCCCCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCC-CchhhhHHhhhcCCCc
Q 004267 333 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYV 411 (764)
Q Consensus 333 l~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~~ 411 (764)
+..|+.... .+.+|.+|+++..+.+.+++ |. ..+++..++.++-...+...+...... ++..+..++..+.| .
T Consensus 138 LK~LEEpp~--~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G-d 211 (535)
T PRK08451 138 LKTLEEPPS--YVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNG-S 211 (535)
T ss_pred HHHHhhcCC--ceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-c
Confidence 778876533 45555566778889999988 64 578899888887766666555433322 33456777777766 4
Q ss_pred hHHHHHHHHHHH
Q 004267 412 GADLAALCTEAA 423 (764)
Q Consensus 412 ~~dl~~l~~~a~ 423 (764)
.+++..++..+.
T Consensus 212 lR~alnlLdqai 223 (535)
T PRK08451 212 LRDTLTLLDQAI 223 (535)
T ss_pred HHHHHHHHHHHH
Confidence 455555554443
No 291
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.95 E-value=4.8e-09 Score=114.23 Aligned_cols=174 Identities=20% Similarity=0.180 Sum_probs=115.1
Q ss_pred ccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCee----E---------
Q 004267 478 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANF----I--------- 544 (764)
Q Consensus 478 v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~----i--------- 544 (764)
-.+++|.|++.+++.|.+.+.. | +.+..+||+||+|+||+++|.++|..+-+.- -
T Consensus 16 ~~~~~iiGq~~~~~~L~~~~~~-----------~-rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l 83 (365)
T PRK07471 16 RETTALFGHAAAEAALLDAYRS-----------G-RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSL 83 (365)
T ss_pred CchhhccChHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccc
Confidence 4678999999999988766542 1 3445699999999999999999999652100 0
Q ss_pred EE-------------ecccchhcc---cCc--------chHHHHHHHHHHh----hCCCeEEEEecccchhhccCCCCCC
Q 004267 545 SV-------------KGPELLTMW---FGE--------SEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSVGD 596 (764)
Q Consensus 545 ~v-------------~~~~l~~~~---~g~--------se~~i~~~f~~a~----~~~p~iifiDEid~l~~~r~~~~~~ 596 (764)
.+ +-+++.--. -+. .-..||++-+.+. ...+.|++|||+|.+-
T Consensus 84 ~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~--------- 154 (365)
T PRK07471 84 AIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMN--------- 154 (365)
T ss_pred cCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcC---------
Confidence 00 001111000 010 1234666555443 4567899999999862
Q ss_pred CCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCCCcccH
Q 004267 597 AGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDL 676 (764)
Q Consensus 597 ~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l 676 (764)
....|.||..++.. ..+.++|.+|+.++.+.|.+.+ |+. .+.|++|+.++..+++...... ..+..+
T Consensus 155 -----~~aanaLLK~LEep--p~~~~~IL~t~~~~~llpti~S--Rc~-~i~l~~l~~~~i~~~L~~~~~~---~~~~~~ 221 (365)
T PRK07471 155 -----ANAANALLKVLEEP--PARSLFLLVSHAPARLLPTIRS--RCR-KLRLRPLAPEDVIDALAAAGPD---LPDDPR 221 (365)
T ss_pred -----HHHHHHHHHHHhcC--CCCeEEEEEECCchhchHHhhc--cce-EEECCCCCHHHHHHHHHHhccc---CCHHHH
Confidence 35577888888853 3456777788889888888876 875 8999999999998888775421 122223
Q ss_pred HHHHHHCCC
Q 004267 677 RALAKYTQG 685 (764)
Q Consensus 677 ~~la~~~~g 685 (764)
..++..+.|
T Consensus 222 ~~l~~~s~G 230 (365)
T PRK07471 222 AALAALAEG 230 (365)
T ss_pred HHHHHHcCC
Confidence 456666665
No 292
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.93 E-value=2.7e-09 Score=125.48 Aligned_cols=31 Identities=26% Similarity=0.445 Sum_probs=27.9
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANET 266 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l 266 (764)
++.+.++..+.|+||+|||||||++.|++..
T Consensus 21 s~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~ 51 (638)
T PRK10636 21 TATINPGQKVGLVGKNGCGKSTLLALLKNEI 51 (638)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3567889999999999999999999999975
No 293
>PRK04132 replication factor C small subunit; Provisional
Probab=98.93 E-value=1.4e-08 Score=119.89 Aligned_cols=156 Identities=18% Similarity=0.205 Sum_probs=115.9
Q ss_pred eeeeC--CCCCChhHHHHHHHHHh-----CCeeEEEecccchhcccCcchHHHHHHHHHHhhC------CCeEEEEeccc
Q 004267 518 VLFYG--PPGCGKTLLAKAIANEC-----QANFISVKGPELLTMWFGESEANVREIFDKARQS------APCVLFFDELD 584 (764)
Q Consensus 518 ill~G--ppGtGKT~lak~lA~~~-----~~~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~------~p~iifiDEid 584 (764)
-+..| |++.||||+|+++|+++ +.+++.+++++..+ -..||++...+... ...|+||||+|
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvIIDEaD 640 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFLDEAD 640 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEEEECcc
Confidence 55668 99999999999999997 56899999998432 34566666554322 23699999999
Q ss_pred chhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHH
Q 004267 585 SIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKAC 664 (764)
Q Consensus 585 ~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~ 664 (764)
.+-. ...+.|+..|+.. ..++.+|++||.++.+-+++.+ |+ ..+.|++|+.++....++..
T Consensus 641 ~Lt~--------------~AQnALLk~lEep--~~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~L~~I 701 (846)
T PRK04132 641 ALTQ--------------DAQQALRRTMEMF--SSNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRLRYI 701 (846)
T ss_pred cCCH--------------HHHHHHHHHhhCC--CCCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHHHHHH
Confidence 9732 3457788888853 3577888899999999999887 88 58999999998888888877
Q ss_pred hccCCCC-CcccHHHHHHHCCCCCHHHHHHHHHHHH
Q 004267 665 LRKSPVS-KDVDLRALAKYTQGFSGADITEICQRAC 699 (764)
Q Consensus 665 ~~~~~~~-~~~~l~~la~~~~g~sg~di~~~~~~a~ 699 (764)
+.+.++. ++..+..++..++| +.+...++++.++
T Consensus 702 ~~~Egi~i~~e~L~~Ia~~s~G-DlR~AIn~Lq~~~ 736 (846)
T PRK04132 702 AENEGLELTEEGLQAILYIAEG-DMRRAINILQAAA 736 (846)
T ss_pred HHhcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 7655543 34467888888776 4455555555544
No 294
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.92 E-value=1.6e-08 Score=108.71 Aligned_cols=147 Identities=20% Similarity=0.302 Sum_probs=101.2
Q ss_pred CCcceeeeCCCCCChhHHHHHHHHHhCC------------------------eeEEEecccchhcccCcchHHHHHHHHH
Q 004267 514 PSKGVLFYGPPGCGKTLLAKAIANECQA------------------------NFISVKGPELLTMWFGESEANVREIFDK 569 (764)
Q Consensus 514 ~~~gill~GppGtGKT~lak~lA~~~~~------------------------~~i~v~~~~l~~~~~g~se~~i~~~f~~ 569 (764)
.+..+||+||+|+|||++|+++|..+.. .++.+...+- ++ .-+-..||++-+.
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~~--~i~id~iR~l~~~ 97 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-DK--TIKVDQVRELVSF 97 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-CC--CCCHHHHHHHHHH
Confidence 4556999999999999999999997532 1222221100 00 0123567766665
Q ss_pred Hhh----CCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCCCCCccCCCCCccce
Q 004267 570 ARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQ 645 (764)
Q Consensus 570 a~~----~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~ 645 (764)
+.. ....|++||++|.+- ....|.||..|+. +..++++|.+|+.++.|.|.+++ |+.
T Consensus 98 ~~~~~~~~~~kv~iI~~a~~m~--------------~~aaNaLLK~LEE--Pp~~~~fiL~t~~~~~ll~TI~S--Rc~- 158 (328)
T PRK05707 98 VVQTAQLGGRKVVLIEPAEAMN--------------RNAANALLKSLEE--PSGDTVLLLISHQPSRLLPTIKS--RCQ- 158 (328)
T ss_pred HhhccccCCCeEEEECChhhCC--------------HHHHHHHHHHHhC--CCCCeEEEEEECChhhCcHHHHh--hce-
Confidence 543 446799999999973 3467889999986 34578888999999999999998 987
Q ss_pred EEeecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCC
Q 004267 646 LIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQG 685 (764)
Q Consensus 646 ~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g 685 (764)
.+.|++|+.++..+.+...... ..+.+...++....|
T Consensus 159 ~~~~~~~~~~~~~~~L~~~~~~---~~~~~~~~~l~la~G 195 (328)
T PRK05707 159 QQACPLPSNEESLQWLQQALPE---SDERERIELLTLAGG 195 (328)
T ss_pred eeeCCCcCHHHHHHHHHHhccc---CChHHHHHHHHHcCC
Confidence 5999999998888777655311 223334455556655
No 295
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.91 E-value=6.4e-09 Score=119.61 Aligned_cols=32 Identities=22% Similarity=0.372 Sum_probs=28.1
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 267 (764)
++.+.+++.+.|.||+|+|||||++.|++.+.
T Consensus 25 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (506)
T PRK13549 25 SLKVRAGEIVSLCGENGAGKSTLMKVLSGVYP 56 (506)
T ss_pred eEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34567889999999999999999999999764
No 296
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.90 E-value=1e-09 Score=103.37 Aligned_cols=109 Identities=28% Similarity=0.414 Sum_probs=69.0
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhh------hhccch---hHHHHHHHHHHHHhcCCeEEEEccccccC
Q 004267 244 GILLYGPPGSGKTLIARAVANETGAFFFCINGPEIM------SKLAGE---SESNLRKAFEEAEKNAPSIIFIDEIDSIA 314 (764)
Q Consensus 244 ~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~------~~~~g~---~~~~l~~vf~~a~~~~p~il~iDEid~l~ 314 (764)
+|+|+||||||||+|++.+|..++.+++.++++... ..+.-. ....-..+.+... .++++||||++..-
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~--~~~il~lDEin~a~ 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR--KGGILVLDEINRAP 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH--EEEEEEESSCGG--
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccccc--ceeEEEECCcccCC
Confidence 589999999999999999999999999888876532 111110 0000000011111 56899999998652
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhccc-----------CCC------eEEEEEecCCCC----CCChhhhccCCc
Q 004267 315 PKREKTHGEVERRIVSQLLTLMDGLK-----------SRA------HVIVIGATNRPN----SIDPALRRFGRF 367 (764)
Q Consensus 315 ~~~~~~~~~~~~~v~~~Ll~~ld~~~-----------~~~------~v~vI~atn~~~----~ld~al~r~~rf 367 (764)
..+...|+.+++.-. ... ++.+|+|+|+.. .+++++++ ||
T Consensus 79 -----------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 79 -----------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp -----------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred -----------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 335556666665311 111 389999999988 88999988 66
No 297
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.90 E-value=4.1e-08 Score=114.14 Aligned_cols=185 Identities=19% Similarity=0.263 Sum_probs=118.2
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeE----------
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFF---------- 270 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~---------- 270 (764)
+..+.+|+++.|.+..++.|+..+... ..+..+||+||+|+||||+++++|+.+++..
T Consensus 9 kyRP~~~~eiiGq~~~~~~L~~~i~~~------------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~ 76 (585)
T PRK14950 9 KWRSQTFAELVGQEHVVQTLRNAIAEG------------RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGT 76 (585)
T ss_pred HhCCCCHHHhcCCHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 456778999999999999998877641 1244689999999999999999999875321
Q ss_pred ---------------EEEechhhhhhccchhHHHHHHHHHHHHh----cCCeEEEEccccccCCCCCCCchHHHHHHHHH
Q 004267 271 ---------------FCINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQ 331 (764)
Q Consensus 271 ---------------i~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~ 331 (764)
+.+++.. ...-..++.+.+.+.. ....|+||||+|.+.. ...+.
T Consensus 77 c~~c~~i~~~~~~d~~~i~~~~------~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~-----------~a~na 139 (585)
T PRK14950 77 CEMCRAIAEGSAVDVIEMDAAS------HTSVDDAREIIERVQFRPALARYKVYIIDEVHMLST-----------AAFNA 139 (585)
T ss_pred CHHHHHHhcCCCCeEEEEeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCH-----------HHHHH
Confidence 1222110 1112344555443332 3346999999997742 22456
Q ss_pred HHHHhhcccCCCeEEEEEecCCCCCCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCC-CchhhhHHhhhcCCC
Q 004267 332 LLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGY 410 (764)
Q Consensus 332 Ll~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~ 410 (764)
|+..++... ..+++|.+++.++.+.+.+++ |+ ..+++..++..+...++...+....+. ++..+..++..+.|
T Consensus 140 LLk~LEepp--~~tv~Il~t~~~~kll~tI~S--R~-~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G- 213 (585)
T PRK14950 140 LLKTLEEPP--PHAIFILATTEVHKVPATILS--RC-QRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG- 213 (585)
T ss_pred HHHHHhcCC--CCeEEEEEeCChhhhhHHHHh--cc-ceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 777776643 245555566777777777776 55 457888888887777777665443332 33346677777765
Q ss_pred chHHHHHHHH
Q 004267 411 VGADLAALCT 420 (764)
Q Consensus 411 ~~~dl~~l~~ 420 (764)
...++.+.+.
T Consensus 214 dlr~al~~Le 223 (585)
T PRK14950 214 SMRDAENLLQ 223 (585)
T ss_pred CHHHHHHHHH
Confidence 3344433333
No 298
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.90 E-value=4.7e-09 Score=112.11 Aligned_cols=183 Identities=18% Similarity=0.275 Sum_probs=121.5
Q ss_pred cccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCe----------eEEEec
Q 004267 479 SWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN----------FISVKG 548 (764)
Q Consensus 479 ~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~----------~i~v~~ 548 (764)
.|++|.|++.+++.|...+.. | +.+..+||+||+|+||+++|.++|..+-.. +...+-
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~-----------~-rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~h 69 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ-----------N-RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNH 69 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh-----------C-CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCC
Confidence 488999999999988876542 1 334579999999999999999999874211 111122
Q ss_pred ccchhc---c--cCc--------------------chHHHHHHHHHHhh----CCCeEEEEecccchhhccCCCCCCCCc
Q 004267 549 PELLTM---W--FGE--------------------SEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGG 599 (764)
Q Consensus 549 ~~l~~~---~--~g~--------------------se~~i~~~f~~a~~----~~p~iifiDEid~l~~~r~~~~~~~~~ 599 (764)
||+.-- | -|. .-..+|++-+.+.. ....|++||++|.+.
T Consensus 70 PDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~------------ 137 (314)
T PRK07399 70 PDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMN------------ 137 (314)
T ss_pred CCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcC------------
Confidence 332200 0 011 11246666655543 446799999998863
Q ss_pred chHHHHHHHHHhhcCCCCCCcEEEEecCCCCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCCCcccHHHH
Q 004267 600 AADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRAL 679 (764)
Q Consensus 600 ~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~l 679 (764)
....|.||..|+..+ .. ++|..|+.++.|-|.+++ |+ ..+.|++|+.++..++++......... .++..+
T Consensus 138 --~~aaNaLLK~LEEPp--~~-~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~~~~~~~--~~~~~l 207 (314)
T PRK07399 138 --EAAANALLKTLEEPG--NG-TLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLGDEEILN--INFPEL 207 (314)
T ss_pred --HHHHHHHHHHHhCCC--CC-eEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhhccccch--hHHHHH
Confidence 345688899998754 33 556667788999999987 88 499999999999999888765322211 234677
Q ss_pred HHHCCCCCHHHHHHHHH
Q 004267 680 AKYTQGFSGADITEICQ 696 (764)
Q Consensus 680 a~~~~g~sg~di~~~~~ 696 (764)
+....| +.+...++++
T Consensus 208 ~~~a~G-s~~~al~~l~ 223 (314)
T PRK07399 208 LALAQG-SPGAAIANIE 223 (314)
T ss_pred HHHcCC-CHHHHHHHHH
Confidence 777766 4444443443
No 299
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.88 E-value=8.2e-09 Score=118.92 Aligned_cols=31 Identities=23% Similarity=0.381 Sum_probs=27.4
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANET 266 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l 266 (764)
++.+.+++.+.|.||+|+|||||+++|++.+
T Consensus 25 s~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 55 (510)
T PRK09700 25 NLTVYPGEIHALLGENGAGKSTLMKVLSGIH 55 (510)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHcCCc
Confidence 3456788999999999999999999999875
No 300
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=98.88 E-value=7.1e-09 Score=111.06 Aligned_cols=159 Identities=25% Similarity=0.420 Sum_probs=98.6
Q ss_pred CCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCC-ceEEEECCCCCCHHHHHHHHHHHhCC-------e--EEE
Q 004267 203 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPP-KGILLYGPPGSGKTLIARAVANETGA-------F--FFC 272 (764)
Q Consensus 203 ~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~-~~vLL~GppGtGKTtLar~la~~l~~-------~--~i~ 272 (764)
....|++|.|.++.++.+.-... .++ .++||.|+|||||||+++++++.++. + +..
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~--------------~~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~ 68 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAI--------------DPGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSAR 68 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHh--------------ccCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCc
Confidence 35678999999999887753321 123 57999999999999999999999842 1 111
Q ss_pred Eec-hhh--------hh---------------hccch--hHHHH---HHHHHH--HHhcCCeEEEEccccccCCCCCCCc
Q 004267 273 ING-PEI--------MS---------------KLAGE--SESNL---RKAFEE--AEKNAPSIIFIDEIDSIAPKREKTH 321 (764)
Q Consensus 273 v~~-~~l--------~~---------------~~~g~--~~~~l---~~vf~~--a~~~~p~il~iDEid~l~~~~~~~~ 321 (764)
+.+ ++. .. ...|. ....+ +..|+. .......+||+||++.+.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~------- 141 (334)
T PRK13407 69 PEDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLE------- 141 (334)
T ss_pred ccCCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCC-------
Confidence 111 000 00 01110 00000 001110 001112589999998764
Q ss_pred hHHHHHHHHHHHHHhhccc-----------CCCeEEEEEecCCCC-CCChhhhccCCcceEEEecCCCh-HHHHHHHHHH
Q 004267 322 GEVERRIVSQLLTLMDGLK-----------SRAHVIVIGATNRPN-SIDPALRRFGRFDREIDIGVPDE-VGRLEVLRIH 388 (764)
Q Consensus 322 ~~~~~~v~~~Ll~~ld~~~-----------~~~~v~vI~atn~~~-~ld~al~r~~rf~~~i~i~~p~~-~~R~~il~~~ 388 (764)
..+.+.|++.|+.-. ....+++++++|..+ .+++++.. ||...+.++.|.. ++|.+++...
T Consensus 142 ----~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~~~ 215 (334)
T PRK13407 142 ----DHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIRRR 215 (334)
T ss_pred ----HHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHh
Confidence 234566777775321 234688888888654 57888877 9999999998877 8899998764
No 301
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=8.5e-09 Score=105.85 Aligned_cols=83 Identities=24% Similarity=0.418 Sum_probs=60.6
Q ss_pred eEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCC--------CCCcEEEEecC----CCCCCCCccCCCCCcc
Q 004267 576 CVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS--------AKKTVFIIGAT----NRPDIIDPALLRPGRL 643 (764)
Q Consensus 576 ~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~--------~~~~v~vi~aT----n~~~~ld~allrpgRf 643 (764)
.|+||||||.++.+.+.+.++ -.-.-+-..||-.++|-. ..+.+++||+. ..|..|=|.|- |||
T Consensus 252 GIvFIDEIDKIa~~~~~g~~d--vSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQ--GRf 327 (444)
T COG1220 252 GIVFIDEIDKIAKRGGSGGPD--VSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQ--GRF 327 (444)
T ss_pred CeEEEehhhHHHhcCCCCCCC--cchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhc--CCC
Confidence 599999999999876533222 122345566777777642 34578888876 45777777775 799
Q ss_pred ceEEeecCCCHHHHHHHHH
Q 004267 644 DQLIYIPLPDEDSRHQIFK 662 (764)
Q Consensus 644 ~~~i~~~~p~~~~r~~Il~ 662 (764)
...++....+.+.-.+||.
T Consensus 328 PIRVEL~~Lt~~Df~rILt 346 (444)
T COG1220 328 PIRVELDALTKEDFERILT 346 (444)
T ss_pred ceEEEcccCCHHHHHHHHc
Confidence 9999999999999888883
No 302
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.87 E-value=4e-09 Score=120.94 Aligned_cols=31 Identities=35% Similarity=0.518 Sum_probs=27.7
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANET 266 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l 266 (764)
++.+.+++.+.|.||+|+|||||+++|++.+
T Consensus 23 sl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~ 53 (490)
T PRK10938 23 SLTLNAGDSWAFVGANGSGKSALARALAGEL 53 (490)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 3456889999999999999999999999876
No 303
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.87 E-value=4.8e-09 Score=123.66 Aligned_cols=31 Identities=19% Similarity=0.442 Sum_probs=27.8
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANET 266 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l 266 (764)
++.+.++..+.|+||+|||||||+++|++..
T Consensus 23 s~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~ 53 (635)
T PRK11147 23 ELHIEDNERVCLVGRNGAGKSTLMKILNGEV 53 (635)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 3456888999999999999999999999975
No 304
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.87 E-value=9.8e-09 Score=118.09 Aligned_cols=31 Identities=19% Similarity=0.313 Sum_probs=27.5
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANET 266 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l 266 (764)
++.+.+++.+.|.||+|+|||||+++|++.+
T Consensus 31 sl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~ 61 (510)
T PRK15439 31 DFTLHAGEVHALLGGNGAGKSTLMKIIAGIV 61 (510)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3456788899999999999999999999876
No 305
>PRK09087 hypothetical protein; Validated
Probab=98.86 E-value=3.7e-08 Score=100.42 Aligned_cols=140 Identities=22% Similarity=0.292 Sum_probs=92.2
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCc
Q 004267 242 PKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTH 321 (764)
Q Consensus 242 ~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~ 321 (764)
...++|+||+|||||+|+++++...+..++ +..++.. .++..... .+++|||++.+...
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~~~~i--~~~~~~~-----------~~~~~~~~---~~l~iDDi~~~~~~----- 102 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSDALLI--HPNEIGS-----------DAANAAAE---GPVLIEDIDAGGFD----- 102 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcCCEEe--cHHHcch-----------HHHHhhhc---CeEEEECCCCCCCC-----
Confidence 345999999999999999999988765533 3222111 11111111 47899999976211
Q ss_pred hHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCC---ChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCC-CCc
Q 004267 322 GEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI---DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDD 397 (764)
Q Consensus 322 ~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~l---d~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l-~~~ 397 (764)
...|..+++.+...+..+|++++..|..+ .+.|++.......+++..|+.+.|.++++..+....+ .++
T Consensus 103 -------~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ 175 (226)
T PRK09087 103 -------ETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDP 175 (226)
T ss_pred -------HHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 13466677666666667777777665433 5777772223477899999999999999988765433 233
Q ss_pred hhhhHHhhhcCC
Q 004267 398 VDLERIAKDTHG 409 (764)
Q Consensus 398 ~~l~~la~~t~g 409 (764)
..++.++++..+
T Consensus 176 ev~~~La~~~~r 187 (226)
T PRK09087 176 HVVYYLVSRMER 187 (226)
T ss_pred HHHHHHHHHhhh
Confidence 457788887764
No 306
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.86 E-value=1.1e-08 Score=117.33 Aligned_cols=31 Identities=23% Similarity=0.369 Sum_probs=27.5
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANET 266 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l 266 (764)
++.+.+++.+.|.||+|+|||||+++|++.+
T Consensus 18 s~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 48 (491)
T PRK10982 18 NLKVRPHSIHALMGENGAGKSTLLKCLFGIY 48 (491)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 3456788899999999999999999999875
No 307
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.85 E-value=5.4e-08 Score=109.18 Aligned_cols=155 Identities=26% Similarity=0.360 Sum_probs=102.8
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhhhhccchhHHHHHHHHHH--HH--hcCCeEEEEccccccCC
Q 004267 240 KPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEE--AE--KNAPSIIFIDEIDSIAP 315 (764)
Q Consensus 240 ~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~--a~--~~~p~il~iDEid~l~~ 315 (764)
++.+-+||+||||-||||||+.+|...|..++.+|+++-.+. .....++..+.+. +. ...|..|++||||--.
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt~--~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~- 400 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERTA--PMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP- 400 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhcCceEEEecccccccH--HHHHHHHHHHHhhccccccCCCcceEEEecccCCc-
Confidence 445669999999999999999999999999999999875431 1122333333222 11 2679999999998432
Q ss_pred CCCCCchHHHHHHHHHHHHHhhc--c----cCC-------------CeEEEEEecCCCCCCChhhhccCCcceEEEecCC
Q 004267 316 KREKTHGEVERRIVSQLLTLMDG--L----KSR-------------AHVIVIGATNRPNSIDPALRRFGRFDREIDIGVP 376 (764)
Q Consensus 316 ~~~~~~~~~~~~v~~~Ll~~ld~--~----~~~-------------~~v~vI~atn~~~~ld~al~r~~rf~~~i~i~~p 376 (764)
...+..++.++.. . ... -.--||+.||+. .-|+|+-.--|-..+.+..|
T Consensus 401 ----------~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdL--YaPaLR~Lr~~A~ii~f~~p 468 (877)
T KOG1969|consen 401 ----------RAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDL--YAPALRPLRPFAEIIAFVPP 468 (877)
T ss_pred ----------HHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCc--cchhhhhcccceEEEEecCC
Confidence 3345555555541 0 000 012478889964 56888877678888999999
Q ss_pred ChHHHHHHHHHHhcCCCCCC-chhhhHHhhhcCC
Q 004267 377 DEVGRLEVLRIHTKNMKLSD-DVDLERIAKDTHG 409 (764)
Q Consensus 377 ~~~~R~~il~~~~~~~~l~~-~~~l~~la~~t~g 409 (764)
....-.+-|+..+.+-.+.. ...+..|.+.+.+
T Consensus 469 ~~s~Lv~RL~~IC~rE~mr~d~~aL~~L~el~~~ 502 (877)
T KOG1969|consen 469 SQSRLVERLNEICHRENMRADSKALNALCELTQN 502 (877)
T ss_pred ChhHHHHHHHHHHhhhcCCCCHHHHHHHHHHhcc
Confidence 88776677776665544432 2346666666655
No 308
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.85 E-value=2.4e-08 Score=108.31 Aligned_cols=129 Identities=30% Similarity=0.434 Sum_probs=88.0
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhhh--hccchhHHHH------------HHHHHHHHhcCCeEEE
Q 004267 241 PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS--KLAGESESNL------------RKAFEEAEKNAPSIIF 306 (764)
Q Consensus 241 ~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~--~~~g~~~~~l------------~~vf~~a~~~~p~il~ 306 (764)
.+.++||.||||||||+|++.+|..++.+|+.+++..... ...|...-.. +-+|.... ++++
T Consensus 42 ~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~----~ill 117 (329)
T COG0714 42 AGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVR----VILL 117 (329)
T ss_pred cCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccc----eEEE
Confidence 4678999999999999999999999999999998864322 1112111110 01111111 4999
Q ss_pred EccccccCCCCCCCchHHHHHHHHHHHHHhhc----------ccCCCeEEEEEecC-----CCCCCChhhhccCCcceEE
Q 004267 307 IDEIDSIAPKREKTHGEVERRIVSQLLTLMDG----------LKSRAHVIVIGATN-----RPNSIDPALRRFGRFDREI 371 (764)
Q Consensus 307 iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~----------~~~~~~v~vI~atn-----~~~~ld~al~r~~rf~~~i 371 (764)
+|||+...+ .+.+.|+..|+. +.-...++||+|+| ....+++++.+ ||...+
T Consensus 118 ~DEInra~p-----------~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~ 184 (329)
T COG0714 118 LDEINRAPP-----------EVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLLRI 184 (329)
T ss_pred EeccccCCH-----------HHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEEEE
Confidence 999986643 345667777765 33446788999889 34567889988 898889
Q ss_pred EecCCChH-HHHHHHH
Q 004267 372 DIGVPDEV-GRLEVLR 386 (764)
Q Consensus 372 ~i~~p~~~-~R~~il~ 386 (764)
.++.|+.+ +...++.
T Consensus 185 ~v~yp~~~~e~~~i~~ 200 (329)
T COG0714 185 YVDYPDSEEEERIILA 200 (329)
T ss_pred ecCCCCchHHHHHHHH
Confidence 99999544 4444433
No 309
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.85 E-value=1.1e-09 Score=107.86 Aligned_cols=142 Identities=29% Similarity=0.444 Sum_probs=64.3
Q ss_pred ccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCC----e------eEEEec-
Q 004267 480 WEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA----N------FISVKG- 548 (764)
Q Consensus 480 ~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~----~------~i~v~~- 548 (764)
|.||.|++.+|+.|.-... | ..++||+||||||||++|+.+...+-. . ..++.+
T Consensus 2 f~dI~GQe~aKrAL~iAAa------------G---~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~ 66 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAA------------G---GHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGL 66 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHH------------C---C--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---
T ss_pred hhhhcCcHHHHHHHHHHHc------------C---CCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccC
Confidence 6789999999987754322 2 247999999999999999999986410 0 000011
Q ss_pred ---------ccchhcccCcchHHH-H-------HHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHh
Q 004267 549 ---------PELLTMWFGESEANV-R-------EIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTE 611 (764)
Q Consensus 549 ---------~~l~~~~~g~se~~i-~-------~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ 611 (764)
.-+....-..++..+ . -.+..|.. .|||+||+-.+ .+++++.|++-
T Consensus 67 ~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh~---GVLflDE~~ef--------------~~~vld~Lr~p 129 (206)
T PF01078_consen 67 GPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLAHR---GVLFLDELNEF--------------DRSVLDALRQP 129 (206)
T ss_dssp S---EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGGTT---SEEEECETTTS---------------HHHHHHHHHH
T ss_pred CCCCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhcC---CEEEechhhhc--------------CHHHHHHHHHH
Confidence 000000000011000 0 01122222 49999998653 47789999998
Q ss_pred hcCCC-----------CCCcEEEEecCCC-----------------------CCCCCccCCCCCccceEEeecCCCHH
Q 004267 612 MDGMS-----------AKKTVFIIGATNR-----------------------PDIIDPALLRPGRLDQLIYIPLPDED 655 (764)
Q Consensus 612 ld~~~-----------~~~~v~vi~aTn~-----------------------~~~ld~allrpgRf~~~i~~~~p~~~ 655 (764)
|+... -..++++|+|+|. ...|.-.++- |||..+.++..+.+
T Consensus 130 le~g~v~i~R~~~~~~~Pa~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~Y~~rlsgpllD--RiDi~v~~~~~~~~ 205 (206)
T PF01078_consen 130 LEDGEVTISRAGGSVTYPARFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRRYQSRLSGPLLD--RIDIHVEVPRVSYE 205 (206)
T ss_dssp HHHSBEEEEETTEEEEEB--EEEEEEE-S-------------------------------------------------
T ss_pred HHCCeEEEEECCceEEEecccEEEEEeccccccccccccccccccccccccccccccccccc--cccccccccccccC
Confidence 86531 1236788999884 1245556666 88888888876654
No 310
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.85 E-value=1.2e-08 Score=117.11 Aligned_cols=31 Identities=23% Similarity=0.441 Sum_probs=27.5
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANET 266 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l 266 (764)
++.+.+++.+.|+||+|+|||||+++|++.+
T Consensus 24 s~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~ 54 (501)
T PRK10762 24 ALNVYPGRVMALVGENGAGKSTMMKVLTGIY 54 (501)
T ss_pred eEEEcCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 3456788999999999999999999999876
No 311
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.84 E-value=1.9e-08 Score=108.94 Aligned_cols=125 Identities=29% Similarity=0.412 Sum_probs=91.4
Q ss_pred ceeeeCCCCCChhHHHHHHHHHhC------------------------CeeEEEecccchhcccCcchHHHHHHHHHHhh
Q 004267 517 GVLFYGPPGCGKTLLAKAIANECQ------------------------ANFISVKGPELLTMWFGESEANVREIFDKARQ 572 (764)
Q Consensus 517 gill~GppGtGKT~lak~lA~~~~------------------------~~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~ 572 (764)
.+||+||||+|||++|.++|+.+. .+++.++.++.... ......|+.+-+....
T Consensus 26 alL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~--~i~~~~vr~~~~~~~~ 103 (325)
T COG0470 26 ALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKI--DIIVEQVRELAEFLSE 103 (325)
T ss_pred eeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCC--cchHHHHHHHHHHhcc
Confidence 599999999999999999999875 57888888775432 1234455555554433
Q ss_pred ----CCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCCCCCccCCCCCccceEEe
Q 004267 573 ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIY 648 (764)
Q Consensus 573 ----~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~ 648 (764)
....|+++||+|.+-. ...+.++..|+. +..+..+|.+||.++.+-|.+.+ |+. .+.
T Consensus 104 ~~~~~~~kviiidead~mt~--------------~A~nallk~lEe--p~~~~~~il~~n~~~~il~tI~S--Rc~-~i~ 164 (325)
T COG0470 104 SPLEGGYKVVIIDEADKLTE--------------DAANALLKTLEE--PPKNTRFILITNDPSKILPTIRS--RCQ-RIR 164 (325)
T ss_pred CCCCCCceEEEeCcHHHHhH--------------HHHHHHHHHhcc--CCCCeEEEEEcCChhhccchhhh--cce-eee
Confidence 3467999999999743 456778887775 45578888999999998887776 775 788
Q ss_pred ecCCCHHHHHHHHH
Q 004267 649 IPLPDEDSRHQIFK 662 (764)
Q Consensus 649 ~~~p~~~~r~~Il~ 662 (764)
|++|+...+....+
T Consensus 165 f~~~~~~~~i~~~e 178 (325)
T COG0470 165 FKPPSRLEAIAWLE 178 (325)
T ss_pred cCCchHHHHHHHhh
Confidence 88776655544444
No 312
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.82 E-value=2.8e-08 Score=112.25 Aligned_cols=143 Identities=26% Similarity=0.385 Sum_probs=86.7
Q ss_pred cccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCC-----------------
Q 004267 479 SWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA----------------- 541 (764)
Q Consensus 479 ~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~----------------- 541 (764)
.|+++.|++.+++.+.-.+ .....++|+||||||||++|+.+++.+..
T Consensus 190 d~~dv~Gq~~~~~al~~aa---------------~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g 254 (499)
T TIGR00368 190 DLKDIKGQQHAKRALEIAA---------------AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVG 254 (499)
T ss_pred CHHHhcCcHHHHhhhhhhc---------------cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchh
Confidence 6788889888876554322 22345999999999999999999974311
Q ss_pred -----------eeEEEecccchhcccCcchHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHH
Q 004267 542 -----------NFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLT 610 (764)
Q Consensus 542 -----------~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~ 610 (764)
||.....+......+|.....-...+..|.. .++|+||++.+. ..+++.|++
T Consensus 255 ~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~---GvLfLDEi~e~~--------------~~~~~~L~~ 317 (499)
T TIGR00368 255 KLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAHN---GVLFLDELPEFK--------------RSVLDALRE 317 (499)
T ss_pred hhccccccccCCccccccccchhhhhCCccccchhhhhccCC---CeEecCChhhCC--------------HHHHHHHHH
Confidence 1111111100000111110000112333433 499999998752 356666666
Q ss_pred hhcCCC-----------CCCcEEEEecCCCC------C-----------------CCCccCCCCCccceEEeecCCCHH
Q 004267 611 EMDGMS-----------AKKTVFIIGATNRP------D-----------------IIDPALLRPGRLDQLIYIPLPDED 655 (764)
Q Consensus 611 ~ld~~~-----------~~~~v~vi~aTn~~------~-----------------~ld~allrpgRf~~~i~~~~p~~~ 655 (764)
.|+... -..++.+|+|+|.- + .|...|+. |||.++.++.++.+
T Consensus 318 ~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~~ 394 (499)
T TIGR00368 318 PIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPPE 394 (499)
T ss_pred HHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCHH
Confidence 665421 12468899999862 1 47778887 99999999987654
No 313
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.82 E-value=1.9e-08 Score=116.13 Aligned_cols=31 Identities=16% Similarity=0.353 Sum_probs=27.7
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANET 266 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l 266 (764)
++.+.++..+.|.||+|||||||+++|++..
T Consensus 20 s~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 50 (520)
T TIGR03269 20 SFTIEEGEVLGILGRSGAGKSVLMHVLRGMD 50 (520)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 3456788999999999999999999999985
No 314
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.82 E-value=4.7e-08 Score=107.01 Aligned_cols=121 Identities=28% Similarity=0.461 Sum_probs=74.2
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCe-------EEEEec----hhhhhhccch--h----HHHHHHHHHHHHh--cCC
Q 004267 242 PKGILLYGPPGSGKTLIARAVANETGAF-------FFCING----PEIMSKLAGE--S----ESNLRKAFEEAEK--NAP 302 (764)
Q Consensus 242 ~~~vLL~GppGtGKTtLar~la~~l~~~-------~i~v~~----~~l~~~~~g~--~----~~~l~~vf~~a~~--~~p 302 (764)
+++++|+||||||||++|+.+|..+... .+.+.. .+++..+... . ...+..+++.|.. ..|
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~ 273 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKK 273 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccCC
Confidence 6789999999999999999999987431 122221 2222211110 0 1123344556654 357
Q ss_pred eEEEEccccccCCCCCCCchHHHHHHHHHHHHHhh--------------------cccCCCeEEEEEecCCCC----CCC
Q 004267 303 SIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMD--------------------GLKSRAHVIVIGATNRPN----SID 358 (764)
Q Consensus 303 ~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld--------------------~~~~~~~v~vI~atn~~~----~ld 358 (764)
.++||||++..-..+ +...++.+|+ .+.-..++.||||+|..+ .+|
T Consensus 274 ~vliIDEINRani~k----------iFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD 343 (459)
T PRK11331 274 YVFIIDEINRANLSK----------VFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVD 343 (459)
T ss_pred cEEEEehhhccCHHH----------hhhhhhhhccccccccccceeeeccccccccccCCCCeEEEEecCccccchhhcc
Confidence 999999998654321 1122222222 233346899999999887 789
Q ss_pred hhhhccCCcceEEEecC
Q 004267 359 PALRRFGRFDREIDIGV 375 (764)
Q Consensus 359 ~al~r~~rf~~~i~i~~ 375 (764)
.|++| ||.. +++.+
T Consensus 344 ~AlrR--RF~f-i~i~p 357 (459)
T PRK11331 344 YALRR--RFSF-IDIEP 357 (459)
T ss_pred HHHHh--hhhe-EEecC
Confidence 99999 7744 45543
No 315
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.82 E-value=9.6e-08 Score=103.62 Aligned_cols=154 Identities=24% Similarity=0.432 Sum_probs=105.6
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHh-----CCeEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEEccccccCCC
Q 004267 242 PKGILLYGPPGSGKTLIARAVANET-----GAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPK 316 (764)
Q Consensus 242 ~~~vLL~GppGtGKTtLar~la~~l-----~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~ 316 (764)
...++||||.|+|||+|++++++.. +..++.+...++...+.......-..-|++-. .-.+++||+++++..+
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk 190 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGK 190 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCC
Confidence 4579999999999999999999886 34577777776665544433333333444444 4579999999999766
Q ss_pred CCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCC---ChhhhccCCcc--eEEEecCCChHHHHHHHHHHhcC
Q 004267 317 REKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI---DPALRRFGRFD--REIDIGVPDEVGRLEVLRIHTKN 391 (764)
Q Consensus 317 ~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~l---d~al~r~~rf~--~~i~i~~p~~~~R~~il~~~~~~ 391 (764)
.. ....+...+..+...++-+|+.+-..|..+ .+.|++ ||. ..+.+..|+.+.|..||+.....
T Consensus 191 ~~---------~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~ 259 (408)
T COG0593 191 ER---------TQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAED 259 (408)
T ss_pred hh---------HHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHh
Confidence 32 235566666666666666666666666655 578887 554 56788999999999999986544
Q ss_pred --CCCCCchhhhHHhhhcCC
Q 004267 392 --MKLSDDVDLERIAKDTHG 409 (764)
Q Consensus 392 --~~l~~~~~l~~la~~t~g 409 (764)
+.+.++ -+..++.+...
T Consensus 260 ~~~~i~~e-v~~~la~~~~~ 278 (408)
T COG0593 260 RGIEIPDE-VLEFLAKRLDR 278 (408)
T ss_pred cCCCCCHH-HHHHHHHHhhc
Confidence 334433 35666666543
No 316
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.81 E-value=1.7e-08 Score=111.28 Aligned_cols=135 Identities=19% Similarity=0.280 Sum_probs=81.1
Q ss_pred CCcceeeeCCCCCChhHHHHHHHHHhCC--eeEEEecc-cchhcccCcc-hHHH--HHHHHHHhhC---CCeEEEEeccc
Q 004267 514 PSKGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGP-ELLTMWFGES-EANV--REIFDKARQS---APCVLFFDELD 584 (764)
Q Consensus 514 ~~~gill~GppGtGKT~lak~lA~~~~~--~~i~v~~~-~l~~~~~g~s-e~~i--~~~f~~a~~~---~p~iifiDEid 584 (764)
...++||+||||||||++|++++...+. +|..+.+. ..-...+|.. -... ..-|...... ...++|+|||.
T Consensus 38 ag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ 117 (498)
T PRK13531 38 SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYQRLTSGYLPEAEIVFLDEIW 117 (498)
T ss_pred cCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhhhcCchhhhcCCccccccEEeecccc
Confidence 3456999999999999999999997643 33333221 0011222321 1111 1123222211 23499999997
Q ss_pred chhhccCCCCCCCCcchHHHHHHHHHhhcCCC--------CCCcEEEEecCCCCC---CCCccCCCCCccceEEeecCCC
Q 004267 585 SIATQRGSSVGDAGGAADRVLNQLLTEMDGMS--------AKKTVFIIGATNRPD---IIDPALLRPGRLDQLIYIPLPD 653 (764)
Q Consensus 585 ~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~--------~~~~v~vi~aTn~~~---~ld~allrpgRf~~~i~~~~p~ 653 (764)
.+ ...+.+.||..|..-. .....++++|||... ...+|++- ||-..+.+|+|+
T Consensus 118 ra--------------sp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~D--RFliri~vp~l~ 181 (498)
T PRK13531 118 KA--------------GPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALYD--RMLIRLWLDKVQ 181 (498)
T ss_pred cC--------------CHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhHh--hEEEEEECCCCC
Confidence 53 3567788888884321 112345566667432 23458887 998899999997
Q ss_pred -HHHHHHHHHHH
Q 004267 654 -EDSRHQIFKAC 664 (764)
Q Consensus 654 -~~~r~~Il~~~ 664 (764)
.++-.+|+...
T Consensus 182 ~~~~e~~lL~~~ 193 (498)
T PRK13531 182 DKANFRSMLTSQ 193 (498)
T ss_pred chHHHHHHHHcc
Confidence 56667888764
No 317
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.81 E-value=1.3e-08 Score=107.25 Aligned_cols=65 Identities=35% Similarity=0.552 Sum_probs=44.6
Q ss_pred cccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhC--CeeEEEecccchh
Q 004267 481 EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLT 553 (764)
Q Consensus 481 ~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~--~~~i~v~~~~l~~ 553 (764)
+.++|+.++++...-.+.. -+-+.-..+++||.||||||||.||-++|.+++ .||+.++++++++
T Consensus 24 ~GlVGQ~~AReAagiiv~m--------Ik~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS 90 (398)
T PF06068_consen 24 DGLVGQEKAREAAGIIVDM--------IKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYS 90 (398)
T ss_dssp TTEES-HHHHHHHHHHHHH--------HHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-B
T ss_pred ccccChHHHHHHHHHHHHH--------HhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeee
Confidence 5678888887765433221 111333467899999999999999999999986 7999999999875
No 318
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.81 E-value=2.4e-07 Score=105.51 Aligned_cols=78 Identities=23% Similarity=0.293 Sum_probs=54.8
Q ss_pred cCCCCcceeeeCCCCCChhHHHHHHHHHh---CCeeEEEecccchhcc------cC----------------------cc
Q 004267 511 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMW------FG----------------------ES 559 (764)
Q Consensus 511 ~~~~~~gill~GppGtGKT~lak~lA~~~---~~~~i~v~~~~l~~~~------~g----------------------~s 559 (764)
|+.+...+|+.||||+|||+|+..++... +.+.+.+...+-...+ +| ..
T Consensus 259 G~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~ 338 (484)
T TIGR02655 259 GFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGL 338 (484)
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCCh
Confidence 67777779999999999999999888753 4455666543321110 00 01
Q ss_pred hHHHHHHHHHHhhCCCeEEEEecccchhh
Q 004267 560 EANVREIFDKARQSAPCVLFFDELDSIAT 588 (764)
Q Consensus 560 e~~i~~~f~~a~~~~p~iifiDEid~l~~ 588 (764)
+..+..+.+......|.+++||-+..+..
T Consensus 339 ~~~~~~i~~~i~~~~~~~vvIDsi~~~~~ 367 (484)
T TIGR02655 339 EDHLQIIKSEIADFKPARIAIDSLSALAR 367 (484)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 45667777788888899999999987754
No 319
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.81 E-value=4.1e-07 Score=89.76 Aligned_cols=168 Identities=21% Similarity=0.317 Sum_probs=117.3
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCeEEEEechh
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPE 277 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~ 277 (764)
..+.+.+.+|.|++.+++.+.+--. .|-. =.+..+|||+|..|||||+|+|++-++. +..++.|+..+
T Consensus 53 ~~~~i~L~~l~Gvd~qk~~L~~NT~-------~F~~--G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~d 123 (287)
T COG2607 53 DPDPIDLADLVGVDRQKEALVRNTE-------QFAE--GLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKED 123 (287)
T ss_pred CCCCcCHHHHhCchHHHHHHHHHHH-------HHHc--CCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHH
Confidence 3456788899999999988843322 1111 1456789999999999999999998887 45678888766
Q ss_pred hhhhccchhHHHHHHHHHHHHh-cCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcc-cC-CCeEEEEEecCCC
Q 004267 278 IMSKLAGESESNLRKAFEEAEK-NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGL-KS-RAHVIVIGATNRP 354 (764)
Q Consensus 278 l~~~~~g~~~~~l~~vf~~a~~-~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~-~~-~~~v~vI~atn~~ 354 (764)
+. .+-.+++..+. ...-|||+|++.+=- ++ .....|-..|++- .. ..+|++.+|+|+.
T Consensus 124 l~---------~Lp~l~~~Lr~~~~kFIlFcDDLSFe~-------gd---~~yK~LKs~LeG~ve~rP~NVl~YATSNRR 184 (287)
T COG2607 124 LA---------TLPDLVELLRARPEKFILFCDDLSFEE-------GD---DAYKALKSALEGGVEGRPANVLFYATSNRR 184 (287)
T ss_pred Hh---------hHHHHHHHHhcCCceEEEEecCCCCCC-------Cc---hHHHHHHHHhcCCcccCCCeEEEEEecCCc
Confidence 64 24445555443 345799999976421 11 1235566666653 22 3588999999987
Q ss_pred CCCChhh--------------------hccCCcceEEEecCCChHHHHHHHHHHhcCCCCCC
Q 004267 355 NSIDPAL--------------------RRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSD 396 (764)
Q Consensus 355 ~~ld~al--------------------~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~ 396 (764)
..++..+ .-..||.--+.+..+++++-+.|+..+++...+.-
T Consensus 185 HLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~ 246 (287)
T COG2607 185 HLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDI 246 (287)
T ss_pred ccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCC
Confidence 6654322 11358888899999999999999998888776653
No 320
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.80 E-value=3.5e-08 Score=106.67 Aligned_cols=149 Identities=20% Similarity=0.209 Sum_probs=102.3
Q ss_pred ccccccc-chhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCC----------------
Q 004267 479 SWEDIGG-LENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA---------------- 541 (764)
Q Consensus 479 ~~~~i~g-~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~---------------- 541 (764)
.|+.|.| ++.+.+.|...+.. -+.+..+||+||+|+|||++|+++|..+-.
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~------------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~ 70 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK------------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCK 70 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHH
Confidence 4777777 88888877765431 134456899999999999999999987422
Q ss_pred --------eeEEEecccchhcccCcchHHHHHHHHHHh----hCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHH
Q 004267 542 --------NFISVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLL 609 (764)
Q Consensus 542 --------~~i~v~~~~l~~~~~g~se~~i~~~f~~a~----~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL 609 (764)
.+..+... ++. -+-..||++-+.+. .....|++|||+|.+- ....|.||
T Consensus 71 ~~~~~~hpD~~~i~~~---~~~--i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~--------------~~a~NaLL 131 (329)
T PRK08058 71 RIDSGNHPDVHLVAPD---GQS--IKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMT--------------ASAANSLL 131 (329)
T ss_pred HHhcCCCCCEEEeccc---ccc--CCHHHHHHHHHHHhhCCcccCceEEEeehHhhhC--------------HHHHHHHH
Confidence 12222110 000 11245666655443 2345699999998863 34568899
Q ss_pred HhhcCCCCCCcEEEEecCCCCCCCCccCCCCCccceEEeecCCCHHHHHHHHHH
Q 004267 610 TEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKA 663 (764)
Q Consensus 610 ~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~ 663 (764)
..|+.. ...+++|.+|+.++.|-|.+++ |+. .++|++|+.++..++++.
T Consensus 132 K~LEEP--p~~~~~Il~t~~~~~ll~TIrS--Rc~-~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 132 KFLEEP--SGGTTAILLTENKHQILPTILS--RCQ-VVEFRPLPPESLIQRLQE 180 (329)
T ss_pred HHhcCC--CCCceEEEEeCChHhCcHHHHh--hce-eeeCCCCCHHHHHHHHHH
Confidence 999863 4456666677788899999887 885 899999999887777754
No 321
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.79 E-value=3.8e-08 Score=113.95 Aligned_cols=31 Identities=19% Similarity=0.292 Sum_probs=27.9
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANET 266 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l 266 (764)
++.+.++..+.|+||+|||||||++.|++.+
T Consensus 21 sl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~ 51 (530)
T PRK15064 21 SVKFGGGNRYGLIGANGCGKSTFMKILGGDL 51 (530)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3567889999999999999999999999876
No 322
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.79 E-value=2.3e-07 Score=100.65 Aligned_cols=182 Identities=17% Similarity=0.188 Sum_probs=115.1
Q ss_pred CCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCe-------EEEE--
Q 004267 203 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF-------FFCI-- 273 (764)
Q Consensus 203 ~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~-------~i~v-- 273 (764)
.+-.++++.|.++.++.+..++... .-+..+||+||+|+||||+++.+|..+... ....
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~g------------rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~ 85 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYREG------------KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADP 85 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHcC------------CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCC
Confidence 4456788999999999998887642 223469999999999999999999987541 1000
Q ss_pred --ec-----------hhhh---hh--c------cchhHHHHHHHHHHH----HhcCCeEEEEccccccCCCCCCCchHHH
Q 004267 274 --NG-----------PEIM---SK--L------AGESESNLRKAFEEA----EKNAPSIIFIDEIDSIAPKREKTHGEVE 325 (764)
Q Consensus 274 --~~-----------~~l~---~~--~------~g~~~~~l~~vf~~a----~~~~p~il~iDEid~l~~~~~~~~~~~~ 325 (764)
.+ +++. .. . ..-.-..++.+.+.. ......|++|||+|.+.+
T Consensus 86 ~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~---------- 155 (351)
T PRK09112 86 DPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNR---------- 155 (351)
T ss_pred CCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCH----------
Confidence 01 0110 00 0 000112344433322 234457999999998742
Q ss_pred HHHHHHHHHHhhcccCCCeEEEEEecCCCCCCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCCCchhhhHHhh
Q 004267 326 RRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAK 405 (764)
Q Consensus 326 ~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~~~~l~~la~ 405 (764)
...+.|+..++.... +.++|..|+.++.+.|.+++ |+ ..+.++.|+.++-.+++........ .++..+..++.
T Consensus 156 -~aanaLLk~LEEpp~--~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~~-~~~~~~~~i~~ 228 (351)
T PRK09112 156 -NAANAILKTLEEPPA--RALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQG-SDGEITEALLQ 228 (351)
T ss_pred -HHHHHHHHHHhcCCC--CceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhcccC-CCHHHHHHHHH
Confidence 234568888876444 44445556778888899987 77 6899999999998888876432222 12233556666
Q ss_pred hcCCCchH
Q 004267 406 DTHGYVGA 413 (764)
Q Consensus 406 ~t~g~~~~ 413 (764)
.+.|-...
T Consensus 229 ~s~G~pr~ 236 (351)
T PRK09112 229 RSKGSVRK 236 (351)
T ss_pred HcCCCHHH
Confidence 66665443
No 323
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.79 E-value=2.9e-08 Score=113.49 Aligned_cols=131 Identities=20% Similarity=0.245 Sum_probs=82.5
Q ss_pred cceeeeCCCCCChhHHHHHHHHHhCC-eeEEEeccc---chh-----cccCcchHHHHHHHHHHhhCCCeEEEEecccch
Q 004267 516 KGVLFYGPPGCGKTLLAKAIANECQA-NFISVKGPE---LLT-----MWFGESEANVREIFDKARQSAPCVLFFDELDSI 586 (764)
Q Consensus 516 ~gill~GppGtGKT~lak~lA~~~~~-~~i~v~~~~---l~~-----~~~g~se~~i~~~f~~a~~~~p~iifiDEid~l 586 (764)
.++||+|+||||||++|++++..+.. .|+...+++ +.. ...|+..-.-. .+..| ...++++||++.+
T Consensus 237 ~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G-~l~~A---~~Gil~iDEi~~l 312 (509)
T smart00350 237 INILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETREFTLEGG-ALVLA---DNGVCCIDEFDKM 312 (509)
T ss_pred ceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEccCcceEEecCc-cEEec---CCCEEEEechhhC
Confidence 46999999999999999999997643 333321111 211 00111000000 11122 2349999999986
Q ss_pred hhccCCCCCCCCcchHHHHHHHHHhhcCCC-----------CCCcEEEEecCCCCC-------------CCCccCCCCCc
Q 004267 587 ATQRGSSVGDAGGAADRVLNQLLTEMDGMS-----------AKKTVFIIGATNRPD-------------IIDPALLRPGR 642 (764)
Q Consensus 587 ~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~-----------~~~~v~vi~aTn~~~-------------~ld~allrpgR 642 (764)
.. .....|+..|+.-. -..+..||||+|..+ .|++++++ |
T Consensus 313 ~~--------------~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLs--R 376 (509)
T smart00350 313 DD--------------SDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILS--R 376 (509)
T ss_pred CH--------------HHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhC--c
Confidence 43 33444555554321 124678999999753 58899998 9
Q ss_pred cceEEee-cCCCHHHHHHHHHHHhc
Q 004267 643 LDQLIYI-PLPDEDSRHQIFKACLR 666 (764)
Q Consensus 643 f~~~i~~-~~p~~~~r~~Il~~~~~ 666 (764)
||.++.+ ..|+.+...+|.++.++
T Consensus 377 FdLi~~~~d~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 377 FDLLFVVLDEVDEERDRELAKHVVD 401 (509)
T ss_pred eeeEEEecCCCChHHHHHHHHHHHH
Confidence 9987665 68899999999988653
No 324
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.79 E-value=2.1e-08 Score=97.50 Aligned_cols=112 Identities=26% Similarity=0.359 Sum_probs=73.2
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCC----eEEEEechhhhhhccchhHHHHHHHHHH----HHhcCCeEEEEccccc
Q 004267 241 PPKGILLYGPPGSGKTLIARAVANETGA----FFFCINGPEIMSKLAGESESNLRKAFEE----AEKNAPSIIFIDEIDS 312 (764)
Q Consensus 241 ~~~~vLL~GppGtGKTtLar~la~~l~~----~~i~v~~~~l~~~~~g~~~~~l~~vf~~----a~~~~p~il~iDEid~ 312 (764)
|-..++|+||+|||||.++++||..+.. +++.++++++.... +....+...+.. .......|+|+||||.
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~--~~~~~~~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGD--DVESSVSKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHH--HCSCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccc--hHHhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence 3457999999999999999999999995 89999998876510 111111111111 1111123999999999
Q ss_pred cCCCCCCCchHHHHHHHHHHHHHhhccc---------CCCeEEEEEecCCC
Q 004267 313 IAPKREKTHGEVERRIVSQLLTLMDGLK---------SRAHVIVIGATNRP 354 (764)
Q Consensus 313 l~~~~~~~~~~~~~~v~~~Ll~~ld~~~---------~~~~v~vI~atn~~ 354 (764)
+.+......+.....+.+.|+..+++-. .-.++++|+|+|--
T Consensus 80 a~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~ 130 (171)
T PF07724_consen 80 AHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFG 130 (171)
T ss_dssp CSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSS
T ss_pred ccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccc
Confidence 9986443444445567788888887521 11367888888853
No 325
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.78 E-value=3e-08 Score=114.69 Aligned_cols=32 Identities=25% Similarity=0.389 Sum_probs=28.2
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 267 (764)
++.+.+++.+.|.||+|||||||++.|++.+.
T Consensus 29 sl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~ 60 (529)
T PRK15134 29 SLQIEAGETLALVGESGSGKSVTALSILRLLP 60 (529)
T ss_pred EEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 34567889999999999999999999999864
No 326
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.78 E-value=3.2e-08 Score=113.73 Aligned_cols=32 Identities=22% Similarity=0.426 Sum_probs=28.0
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 267 (764)
++.+.+++.+.|.||+|+|||||++.|++.+.
T Consensus 21 sl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~ 52 (500)
T TIGR02633 21 DLEVRPGECVGLCGENGAGKSTLMKILSGVYP 52 (500)
T ss_pred EEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34567888999999999999999999999764
No 327
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.78 E-value=1.9e-09 Score=97.30 Aligned_cols=104 Identities=30% Similarity=0.444 Sum_probs=58.2
Q ss_pred ceeeeCCCCCChhHHHHHHHHHhCCeeEEEec-ccch-----hccc-CcchH----HHHHHHHHHhhCCCeEEEEecccc
Q 004267 517 GVLFYGPPGCGKTLLAKAIANECQANFISVKG-PELL-----TMWF-GESEA----NVREIFDKARQSAPCVLFFDELDS 585 (764)
Q Consensus 517 gill~GppGtGKT~lak~lA~~~~~~~i~v~~-~~l~-----~~~~-g~se~----~i~~~f~~a~~~~p~iifiDEid~ 585 (764)
++||.|+||+|||++|+++|..++..|..|.+ ++++ +-.+ ..... .-.-+| ..|+++|||.+
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif-------~~ill~DEiNr 73 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF-------TNILLADEINR 73 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT--------SSEEEEETGGG
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh-------hceeeeccccc
Confidence 48999999999999999999999999998876 3443 1111 11000 112222 24999999977
Q ss_pred hhhccCCCCCCCCcchHHHHHHHHHhhcCC---------CCCCcEEEEecCCCCC-----CCCccCCCCCcc
Q 004267 586 IATQRGSSVGDAGGAADRVLNQLLTEMDGM---------SAKKTVFIIGATNRPD-----IIDPALLRPGRL 643 (764)
Q Consensus 586 l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~---------~~~~~v~vi~aTn~~~-----~ld~allrpgRf 643 (764)
. ..++.+.||..|... .-.+..+||||-|+.+ .|.+|++. ||
T Consensus 74 a--------------ppktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 74 A--------------PPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp S---------------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred C--------------CHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 3 456677788777542 1235688999999866 56666665 65
No 328
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.77 E-value=3.5e-08 Score=105.29 Aligned_cols=162 Identities=21% Similarity=0.240 Sum_probs=104.6
Q ss_pred ccccchhhhhcccceeeccCCChhhhhhccCC-CCcceeeeCCCCCChhHHHHHHHHHhCC-------eeEEEec----c
Q 004267 482 DIGGLENVKRELQETVQYPVEHPEKFEKFGMS-PSKGVLFYGPPGCGKTLLAKAIANECQA-------NFISVKG----P 549 (764)
Q Consensus 482 ~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~-~~~gill~GppGtGKT~lak~lA~~~~~-------~~i~v~~----~ 549 (764)
++.|+++++.++.+.+.... .|.. ..+.++|+|||||||||||++||+.++. +++.+++ +
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a--------~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~~s 123 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAA--------QGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGEES 123 (361)
T ss_pred hccCcHHHHHHHHHHHHHHH--------hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCCCC
Confidence 79999999888776543221 1222 3456899999999999999999998865 8888887 4
Q ss_pred cchhcccCcchHHHHHHHHHHhhC-----------------------C--------------------------------
Q 004267 550 ELLTMWFGESEANVREIFDKARQS-----------------------A-------------------------------- 574 (764)
Q Consensus 550 ~l~~~~~g~se~~i~~~f~~a~~~-----------------------~-------------------------------- 574 (764)
.+....++-....+|..|.....- .
T Consensus 124 p~~e~Pl~l~p~~~r~~~~~~~~~~~~~~~~~l~p~c~~~l~~e~~gd~~~~~V~~~~~s~~~~~gi~~~~P~D~~~qdi 203 (361)
T smart00763 124 PMHEDPLHLFPDELREDLEDEYGIPRRRLEGDLSPWCRKRLDEEYGGDIEKFEVVRVNFSELRRIGIGKFEPKDENNQDI 203 (361)
T ss_pred CCccCCcccCCHHHHHHHHHHhCCChhhcCCCCCHHHHHHHHHHhCCCcceEEEEEecCCeecceEEEEECCCCCCcccH
Confidence 443333333333333333221110 0
Q ss_pred ---------------------------------CeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCC-----
Q 004267 575 ---------------------------------PCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS----- 616 (764)
Q Consensus 575 ---------------------------------p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~----- 616 (764)
..|+-|+|+.+ ....+++.||+.++...
T Consensus 204 ~~L~G~vd~~k~~~~~~~dp~a~~~~G~l~~aNrGi~~f~Ei~K--------------~~~~~l~~LL~~~qE~~v~~~~ 269 (361)
T smart00763 204 SELTGKVDIRKLEIYSESDPRAFSYDGALNRANRGILEFVEMFK--------------ADIKFLHPLLTATQEGNIKGTG 269 (361)
T ss_pred HHHhcccCHHHhcccCCCCCeEEeccCccccccCceEEEeehhc--------------CCHHHHHHHhhhhhcceEecCC
Confidence 01333333322 23567888888877431
Q ss_pred ----CCCcEEEEecCCCCC-------CCCccCCCCCccceEEeecCC-CHHHHHHHHHHHhccC
Q 004267 617 ----AKKTVFIIGATNRPD-------IIDPALLRPGRLDQLIYIPLP-DEDSRHQIFKACLRKS 668 (764)
Q Consensus 617 ----~~~~v~vi~aTn~~~-------~ld~allrpgRf~~~i~~~~p-~~~~r~~Il~~~~~~~ 668 (764)
-.-..+||++||..+ ...+||++ |+. .+++|.| +..+-.+|.+..+...
T Consensus 270 ~~~~~~~d~liia~sNe~e~~~~~~~k~~eaf~d--R~~-~i~vpY~l~~~~E~~Iy~k~~~~s 330 (361)
T smart00763 270 GFAMIPIDGLIIAHSNESEWQRFKSNKKNEALLD--RII-KVKVPYCLRVSEEAQIYEKLLRNS 330 (361)
T ss_pred cccccccceEEEEeCCHHHHhhhhccccchhhhh--ceE-EEeCCCcCCHHHHHHHHHHHhccC
Confidence 112468899999873 56789998 998 9999977 5678888998888653
No 329
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.76 E-value=2.6e-07 Score=107.28 Aligned_cols=175 Identities=20% Similarity=0.289 Sum_probs=118.0
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCe-----------
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 269 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~----------- 269 (764)
...+.+|++|.|.+..++.|+..+... ..+..+|||||+|+|||++|+++|+.+.+.
T Consensus 10 kyRP~~f~~viGq~~~~~~L~~~i~~~------------~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~ 77 (614)
T PRK14971 10 KYRPSTFESVVGQEALTTTLKNAIATN------------KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNE 77 (614)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCc
Confidence 456778999999999999998887641 124569999999999999999999987531
Q ss_pred --------------EEEEechhhhhhccchhHHHHHHHHHHHHhc----CCeEEEEccccccCCCCCCCchHHHHHHHHH
Q 004267 270 --------------FFCINGPEIMSKLAGESESNLRKAFEEAEKN----APSIIFIDEIDSIAPKREKTHGEVERRIVSQ 331 (764)
Q Consensus 270 --------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~----~p~il~iDEid~l~~~~~~~~~~~~~~v~~~ 331 (764)
++.+++.+ ......++.+...+... ...+++|||+|.+.. ...+.
T Consensus 78 C~sC~~~~~~~~~n~~~ld~~~------~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~-----------~a~na 140 (614)
T PRK14971 78 CESCVAFNEQRSYNIHELDAAS------NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQ-----------AAFNA 140 (614)
T ss_pred chHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCH-----------HHHHH
Confidence 22232211 11234566666655332 235999999998732 23456
Q ss_pred HHHHhhcccCCCeEEEEEecCCCCCCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCC-CchhhhHHhhhcCC
Q 004267 332 LLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHG 409 (764)
Q Consensus 332 Ll~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g 409 (764)
|+..|+.... ..++|.+|+.+..+-+.+++ |. ..+++..++..+-...+...+....+. +...+..++..+.|
T Consensus 141 LLK~LEepp~--~tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~g 214 (614)
T PRK14971 141 FLKTLEEPPS--YAIFILATTEKHKILPTILS--RC-QIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADG 214 (614)
T ss_pred HHHHHhCCCC--CeEEEEEeCCchhchHHHHh--hh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 7777776543 44555566667788888887 55 458888888887776776555443333 23346777777765
No 330
>PLN03073 ABC transporter F family; Provisional
Probab=98.76 E-value=2.4e-08 Score=118.13 Aligned_cols=30 Identities=30% Similarity=0.309 Sum_probs=26.8
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHH
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANE 265 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~ 265 (764)
++.+.++..+.|+||+|+|||||++.|++.
T Consensus 197 sl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~ 226 (718)
T PLN03073 197 SVTLAFGRHYGLVGRNGTGKTTFLRYMAMH 226 (718)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 456788899999999999999999999974
No 331
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.76 E-value=6.4e-08 Score=103.92 Aligned_cols=160 Identities=21% Similarity=0.351 Sum_probs=100.2
Q ss_pred CCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCC-------eEEE-Ee
Q 004267 203 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA-------FFFC-IN 274 (764)
Q Consensus 203 ~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~-------~~i~-v~ 274 (764)
...+|++|.|+++.+..|.-....| ...+|||.|++||||||++|+++..+.. +|.. -+
T Consensus 12 ~~~pf~~ivGq~~~k~al~~~~~~p-------------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~ 78 (350)
T CHL00081 12 PVFPFTAIVGQEEMKLALILNVIDP-------------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPS 78 (350)
T ss_pred CCCCHHHHhChHHHHHHHHHhccCC-------------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCC
Confidence 3568999999999888875554332 2247999999999999999999887642 1110 00
Q ss_pred chhh-----hhhc-------------------cchhHHH------HHHHHHHHH---------hcCCeEEEEccccccCC
Q 004267 275 GPEI-----MSKL-------------------AGESESN------LRKAFEEAE---------KNAPSIIFIDEIDSIAP 315 (764)
Q Consensus 275 ~~~l-----~~~~-------------------~g~~~~~------l~~vf~~a~---------~~~p~il~iDEid~l~~ 315 (764)
.++. .... .+-++.+ +...|.... .....+||+||++.+.+
T Consensus 79 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~ 158 (350)
T CHL00081 79 DPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDD 158 (350)
T ss_pred ChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCH
Confidence 0010 0000 0111111 111222111 11236999999998753
Q ss_pred CCCCCchHHHHHHHHHHHHHhhcc-----------cCCCeEEEEEecCCCC-CCChhhhccCCcceEEEecCCC-hHHHH
Q 004267 316 KREKTHGEVERRIVSQLLTLMDGL-----------KSRAHVIVIGATNRPN-SIDPALRRFGRFDREIDIGVPD-EVGRL 382 (764)
Q Consensus 316 ~~~~~~~~~~~~v~~~Ll~~ld~~-----------~~~~~v~vI~atn~~~-~ld~al~r~~rf~~~i~i~~p~-~~~R~ 382 (764)
.+...|++.|+.- ....++++|++.|..+ .+.+++.. ||...+.+..|. .+.+.
T Consensus 159 -----------~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~~~e~ 225 (350)
T CHL00081 159 -----------HLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDPELRV 225 (350)
T ss_pred -----------HHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCChHHHH
Confidence 2345566666431 1234678888777654 58888887 999999999998 58899
Q ss_pred HHHHHH
Q 004267 383 EVLRIH 388 (764)
Q Consensus 383 ~il~~~ 388 (764)
+|++..
T Consensus 226 ~il~~~ 231 (350)
T CHL00081 226 KIVEQR 231 (350)
T ss_pred HHHHhh
Confidence 998754
No 332
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=2e-07 Score=98.61 Aligned_cols=31 Identities=29% Similarity=0.424 Sum_probs=27.1
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANET 266 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l 266 (764)
+|.|-.++...|+||+|-|||||++.||...
T Consensus 284 ~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~Ra 314 (807)
T KOG0066|consen 284 SLTIVYGRRYGLVGPNGMGKTTLLKHIAARA 314 (807)
T ss_pred ceEEEecceecccCCCCCchHHHHHHHHhhh
Confidence 4556788899999999999999999998764
No 333
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=98.75 E-value=5.5e-08 Score=108.55 Aligned_cols=194 Identities=23% Similarity=0.302 Sum_probs=126.7
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeE--E------E
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFF--F------C 272 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~--i------~ 272 (764)
+..+-.|+|+.|.+.....|+..+..-. -....|+.||.||||||+||.+|+.+++.- . .
T Consensus 9 KyRP~~F~evvGQe~v~~~L~nal~~~r------------i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C 76 (515)
T COG2812 9 KYRPKTFDDVVGQEHVVKTLSNALENGR------------IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKC 76 (515)
T ss_pred HhCcccHHHhcccHHHHHHHHHHHHhCc------------chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhh
Confidence 3456689999999999999999887521 234689999999999999999999987542 0 0
Q ss_pred Eechhhhh----------hccchhHHHHHHHHHHHH----hcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhc
Q 004267 273 INGPEIMS----------KLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDG 338 (764)
Q Consensus 273 v~~~~l~~----------~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~ 338 (764)
..|..+.. ......-..+|.+.+.+. .....|++|||+|.|.. ...+.|+..++.
T Consensus 77 ~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~-----------~afNALLKTLEE 145 (515)
T COG2812 77 ISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSK-----------QAFNALLKTLEE 145 (515)
T ss_pred hhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhH-----------HHHHHHhccccc
Confidence 11111111 111123345677777654 34557999999998742 233455555544
Q ss_pred ccCCCeEEEEEecCCCCCCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCC-CchhhhHHhhhcCCCchHHHHH
Q 004267 339 LKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAA 417 (764)
Q Consensus 339 ~~~~~~v~vI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~ 417 (764)
- ..+|.+|.+|..++.+++.+.+ |. ..+.+...+.+.-...|...+.+..+. ++.-+..+++..+| +.+|...
T Consensus 146 P--P~hV~FIlATTe~~Kip~TIlS--Rc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RDals 219 (515)
T COG2812 146 P--PSHVKFILATTEPQKIPNTILS--RC-QRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRDALS 219 (515)
T ss_pred C--ccCeEEEEecCCcCcCchhhhh--cc-ccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-ChhhHHH
Confidence 2 3478888899999999988876 44 335666667766666666665554444 33446777777776 3456666
Q ss_pred HHHHHH
Q 004267 418 LCTEAA 423 (764)
Q Consensus 418 l~~~a~ 423 (764)
++..+.
T Consensus 220 lLDq~i 225 (515)
T COG2812 220 LLDQAI 225 (515)
T ss_pred HHHHHH
Confidence 655554
No 334
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.75 E-value=3.5e-08 Score=113.35 Aligned_cols=31 Identities=19% Similarity=0.345 Sum_probs=27.3
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANET 266 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l 266 (764)
++.+.+++.+.|.||+|+|||||++.|++..
T Consensus 24 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 54 (501)
T PRK11288 24 SFDCRAGQVHALMGENGAGKSTLLKILSGNY 54 (501)
T ss_pred eEEEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3456788899999999999999999999865
No 335
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.75 E-value=8.6e-08 Score=102.99 Aligned_cols=155 Identities=22% Similarity=0.358 Sum_probs=95.4
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCC-------eEE-------
Q 004267 206 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA-------FFF------- 271 (764)
Q Consensus 206 ~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~-------~~i------- 271 (764)
.|..|.|.++.+..+.-.+-.| ...+++|.|+||+||||+++++++.+.. ++-
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~-------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDP-------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPE 68 (337)
T ss_pred CccccccHHHHHHHHHHHhcCC-------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCcc
Confidence 5778999999887763332221 2457999999999999999999988732 110
Q ss_pred --EEechhh----------------hh--------hccchhHHHHHHH-------HHH--HHhcCCeEEEEccccccCCC
Q 004267 272 --CINGPEI----------------MS--------KLAGESESNLRKA-------FEE--AEKNAPSIIFIDEIDSIAPK 316 (764)
Q Consensus 272 --~v~~~~l----------------~~--------~~~g~~~~~l~~v-------f~~--a~~~~p~il~iDEid~l~~~ 316 (764)
..+|... .. ...|.. .+... |+. .......+||+||++.+.+
T Consensus 69 ~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~--d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~- 145 (337)
T TIGR02030 69 MMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTL--DIERALTEGVKAFEPGLLARANRGILYIDEVNLLED- 145 (337)
T ss_pred ccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecch--hHhhHhhcCCEEeecCcceeccCCEEEecChHhCCH-
Confidence 0000000 00 111110 01111 110 0112236999999998642
Q ss_pred CCCCchHHHHHHHHHHHHHhhccc-----------CCCeEEEEEecCCCC-CCChhhhccCCcceEEEecCCCh-HHHHH
Q 004267 317 REKTHGEVERRIVSQLLTLMDGLK-----------SRAHVIVIGATNRPN-SIDPALRRFGRFDREIDIGVPDE-VGRLE 383 (764)
Q Consensus 317 ~~~~~~~~~~~v~~~Ll~~ld~~~-----------~~~~v~vI~atn~~~-~ld~al~r~~rf~~~i~i~~p~~-~~R~~ 383 (764)
.+...|++.|+.-. ...++++|+++|..+ .+.+++.. ||...+.++.|.. ++|.+
T Consensus 146 ----------~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~eer~e 213 (337)
T TIGR02030 146 ----------HLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVELRVE 213 (337)
T ss_pred ----------HHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHHHHHH
Confidence 34456666664311 124678888887554 68888887 9999999999976 78899
Q ss_pred HHHHH
Q 004267 384 VLRIH 388 (764)
Q Consensus 384 il~~~ 388 (764)
|++..
T Consensus 214 IL~~~ 218 (337)
T TIGR02030 214 IVERR 218 (337)
T ss_pred HHHhh
Confidence 98753
No 336
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.75 E-value=3.6e-08 Score=105.91 Aligned_cols=133 Identities=17% Similarity=0.221 Sum_probs=94.3
Q ss_pred CCCcceeeeCCCCCChhHHHHHHHHHhCCe-------------------------eEEEecccch---------------
Q 004267 513 SPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------------------FISVKGPELL--------------- 552 (764)
Q Consensus 513 ~~~~gill~GppGtGKT~lak~lA~~~~~~-------------------------~i~v~~~~l~--------------- 552 (764)
+.+.++||+||+|+||+++|+++|..+.+. +..+......
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 566779999999999999999999865321 2222111000
Q ss_pred ---hc----c-cCcchHHHHHHHHHHh----hCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCc
Q 004267 553 ---TM----W-FGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKT 620 (764)
Q Consensus 553 ---~~----~-~g~se~~i~~~f~~a~----~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~ 620 (764)
++ + -.-+-..||.+.+.+. .....|++||++|.+. ...-|.||+.|+. +..+
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~--------------~~AaNaLLKtLEE--Pp~~ 162 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALN--------------VAAANALLKTLEE--PPPG 162 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcC--------------HHHHHHHHHHhcC--CCcC
Confidence 00 0 0011245666665543 3345699999999873 3456889999984 6678
Q ss_pred EEEEecCCCCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHH
Q 004267 621 VFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKAC 664 (764)
Q Consensus 621 v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~ 664 (764)
+++|.+|++++.|.|.+++ |+ ..+.|++|+.++..+.+...
T Consensus 163 t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 163 TVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred cEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 8899999999999999998 88 59999999999888888653
No 337
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.74 E-value=1.1e-07 Score=110.07 Aligned_cols=132 Identities=23% Similarity=0.304 Sum_probs=89.6
Q ss_pred cceeeeCCCCCChhHHHHHHHHHhCC--eeEEEecccchhcccCcc--hHHHH---H-----HHHHHhhCCCeEEEEecc
Q 004267 516 KGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGES--EANVR---E-----IFDKARQSAPCVLFFDEL 583 (764)
Q Consensus 516 ~gill~GppGtGKT~lak~lA~~~~~--~~i~v~~~~l~~~~~g~s--e~~i~---~-----~f~~a~~~~p~iifiDEi 583 (764)
.|+||.|+||||||++|++++..+.. +|+.+.....-...+|.. +..+. . ++..| .-.++|+|||
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A---~~GvL~lDEi 93 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEA---PRGVLYVDMA 93 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeC---CCCcEeccch
Confidence 46999999999999999999998753 588776432222333331 00000 0 01111 1249999999
Q ss_pred cchhhccCCCCCCCCcchHHHHHHHHHhhcCCC-----------CCCcEEEEecCCCCC---CCCccCCCCCccceEEee
Q 004267 584 DSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-----------AKKTVFIIGATNRPD---IIDPALLRPGRLDQLIYI 649 (764)
Q Consensus 584 d~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~-----------~~~~v~vi~aTn~~~---~ld~allrpgRf~~~i~~ 649 (764)
+.+- ..+.+.|+..|+... ....+.||+|+|..+ .+.++++. ||+.++.+
T Consensus 94 ~rl~--------------~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~ 157 (589)
T TIGR02031 94 NLLD--------------DGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSL 157 (589)
T ss_pred hhCC--------------HHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeec
Confidence 9863 346677777775321 123678899999865 68888988 99998887
Q ss_pred c-CCCHHHHHHHHHHHhc
Q 004267 650 P-LPDEDSRHQIFKACLR 666 (764)
Q Consensus 650 ~-~p~~~~r~~Il~~~~~ 666 (764)
. +|+.++|.+|++.++.
T Consensus 158 ~~~~~~~er~eil~~~~~ 175 (589)
T TIGR02031 158 EDVASQDLRVEIVRRERC 175 (589)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 6 4577889999988763
No 338
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.74 E-value=1.4e-07 Score=93.77 Aligned_cols=142 Identities=18% Similarity=0.273 Sum_probs=92.7
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCe------------------------EEEEechhhhhhccchhHHHHHHHHHHH
Q 004267 242 PKGILLYGPPGSGKTLIARAVANETGAF------------------------FFCINGPEIMSKLAGESESNLRKAFEEA 297 (764)
Q Consensus 242 ~~~vLL~GppGtGKTtLar~la~~l~~~------------------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a 297 (764)
+..+||+||+|+|||++++.++..+... +..+... .. .-....++.+.+.+
T Consensus 14 ~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~---~~--~~~~~~i~~i~~~~ 88 (188)
T TIGR00678 14 AHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPE---GQ--SIKVDQVRELVEFL 88 (188)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccc---cC--cCCHHHHHHHHHHH
Confidence 4579999999999999999999987432 1111110 00 01224555666555
Q ss_pred Hh----cCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCChhhhccCCcceEEEe
Q 004267 298 EK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDI 373 (764)
Q Consensus 298 ~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~rf~~~i~i 373 (764)
.. ....+++|||+|.+.+. ..+.|+..|+.... ...+|.+|+.+..+.+++++ |. ..+++
T Consensus 89 ~~~~~~~~~kviiide~~~l~~~-----------~~~~Ll~~le~~~~--~~~~il~~~~~~~l~~~i~s--r~-~~~~~ 152 (188)
T TIGR00678 89 SRTPQESGRRVVIIEDAERMNEA-----------AANALLKTLEEPPP--NTLFILITPSPEKLLPTIRS--RC-QVLPF 152 (188)
T ss_pred ccCcccCCeEEEEEechhhhCHH-----------HHHHHHHHhcCCCC--CeEEEEEECChHhChHHHHh--hc-EEeeC
Confidence 43 34579999999877431 23567777776433 44555566677889999987 66 57899
Q ss_pred cCCChHHHHHHHHHHhcCCCCCCchhhhHHhhhcCC
Q 004267 374 GVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHG 409 (764)
Q Consensus 374 ~~p~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g 409 (764)
..|+.++..+++... + + ++..+..++..+.|
T Consensus 153 ~~~~~~~~~~~l~~~--g--i-~~~~~~~i~~~~~g 183 (188)
T TIGR00678 153 PPLSEEALLQWLIRQ--G--I-SEEAAELLLALAGG 183 (188)
T ss_pred CCCCHHHHHHHHHHc--C--C-CHHHHHHHHHHcCC
Confidence 999999988888765 1 2 22335555555554
No 339
>PRK13409 putative ATPase RIL; Provisional
Probab=98.73 E-value=3.5e-08 Score=114.63 Aligned_cols=29 Identities=31% Similarity=0.328 Sum_probs=25.8
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhC
Q 004267 239 VKPPKGILLYGPPGSGKTLIARAVANETG 267 (764)
Q Consensus 239 i~~~~~vLL~GppGtGKTtLar~la~~l~ 267 (764)
+.+++.+.|.||+|+|||||++.|++.+.
T Consensus 96 i~~Gev~gLvG~NGaGKSTLlkiL~G~l~ 124 (590)
T PRK13409 96 PKEGKVTGILGPNGIGKTTAVKILSGELI 124 (590)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 46778899999999999999999999763
No 340
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.72 E-value=1.8e-07 Score=107.94 Aligned_cols=189 Identities=13% Similarity=0.141 Sum_probs=105.9
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEE-Eechhh-
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFC-INGPEI- 278 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~-v~~~~l- 278 (764)
+..+.+++++.|.++.++.++.++.-. .++..+++.++|+|||||||||+++.+|++++..++. .+....
T Consensus 77 KyrP~~ldel~~~~~ki~~l~~~l~~~--------~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~ 148 (637)
T TIGR00602 77 KYKPETQHELAVHKKKIEEVETWLKAQ--------VLENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPD 148 (637)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHhc--------ccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhc
Confidence 566778999999999999998887532 1233456679999999999999999999998765422 221100
Q ss_pred ------------hhh--ccchhHHHHHHHHHHHHh----------cCCeEEEEccccccCCCCCCCchHHHHHHHHHHHH
Q 004267 279 ------------MSK--LAGESESNLRKAFEEAEK----------NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLT 334 (764)
Q Consensus 279 ------------~~~--~~g~~~~~l~~vf~~a~~----------~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~ 334 (764)
... ........++.++..+.. ....||||||++.+.... ......++.
T Consensus 149 ~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~--------~~~lq~lLr 220 (637)
T TIGR00602 149 FQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRD--------TRALHEILR 220 (637)
T ss_pred ccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhh--------HHHHHHHHH
Confidence 000 001122344555555542 345799999998765321 112233333
Q ss_pred -HhhcccCCCeEEEEEecC-CCC--------C------CChhhhccCCcceEEEecCCChHHHHHHHHHHhcCC------
Q 004267 335 -LMDGLKSRAHVIVIGATN-RPN--------S------IDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNM------ 392 (764)
Q Consensus 335 -~ld~~~~~~~v~vI~atn-~~~--------~------ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~------ 392 (764)
... ..+.+.+|++++ .+. . +.+++....|. ..|.|.+.....-...|+..+...
T Consensus 221 ~~~~---e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E~~~~~~ 296 (637)
T TIGR00602 221 WKYV---SIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIEAKKNGE 296 (637)
T ss_pred HHhh---cCCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhhhhcccc
Confidence 211 123333443333 221 0 22566532344 468888888877444444333211
Q ss_pred --CCCCchhhhHHhhhcCC
Q 004267 393 --KLSDDVDLERIAKDTHG 409 (764)
Q Consensus 393 --~l~~~~~l~~la~~t~g 409 (764)
.+.....+..++...+|
T Consensus 297 ~~~~p~~~~l~~I~~~s~G 315 (637)
T TIGR00602 297 KIKVPKKTSVELLCQGCSG 315 (637)
T ss_pred ccccCCHHHHHHHHHhCCC
Confidence 11222356666665555
No 341
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.71 E-value=9.7e-07 Score=93.20 Aligned_cols=109 Identities=19% Similarity=0.314 Sum_probs=76.6
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCe-------EEEEechhhhh----------------------------
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF-------FFCINGPEIMS---------------------------- 280 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~-------~i~v~~~~l~~---------------------------- 280 (764)
++.+.+++.+.|+|.+|||||..+.++-+.+..+ -+..+|.++..
T Consensus 30 sf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl 109 (534)
T COG4172 30 SFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPL 109 (534)
T ss_pred eeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEecccccccCcH
Confidence 3456889999999999999999999998887531 13333333311
Q ss_pred -------------------------------------------hccch--hHHHHHHHHHHHHhcCCeEEEEccccccCC
Q 004267 281 -------------------------------------------KLAGE--SESNLRKAFEEAEKNAPSIIFIDEIDSIAP 315 (764)
Q Consensus 281 -------------------------------------------~~~g~--~~~~l~~vf~~a~~~~p~il~iDEid~l~~ 315 (764)
.|..+ ..++-|-++.-|..+.|.+|+-||
T Consensus 110 ~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan~P~lLIADE------ 183 (534)
T COG4172 110 HTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADE------ 183 (534)
T ss_pred hHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcCCCCeEeecC------
Confidence 00000 112224455677778899999999
Q ss_pred CCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCC
Q 004267 316 KREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRP 354 (764)
Q Consensus 316 ~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~ 354 (764)
+....+-.+..|+++++..+..+.+.-++..|++.
T Consensus 184 ----PTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL 218 (534)
T COG4172 184 ----PTTALDVTVQAQILDLLKELQAELGMAILFITHDL 218 (534)
T ss_pred ----CcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccH
Confidence 55666677889999999999888888888888874
No 342
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.69 E-value=6.8e-08 Score=112.32 Aligned_cols=31 Identities=29% Similarity=0.401 Sum_probs=27.8
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANET 266 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l 266 (764)
++.+.++..+.|+||+|||||||+++|++.+
T Consensus 27 s~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~ 57 (556)
T PRK11819 27 SLSFFPGAKIGVLGLNGAGKSTLLRIMAGVD 57 (556)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3457889999999999999999999999976
No 343
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.69 E-value=7.6e-07 Score=92.49 Aligned_cols=62 Identities=37% Similarity=0.635 Sum_probs=46.2
Q ss_pred ccccChHHHHHHH---HHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhC--CeEEEEechhhhh
Q 004267 208 DDVGGVRKQMAQI---RELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG--AFFFCINGPEIMS 280 (764)
Q Consensus 208 ~~i~Gl~~~~~~l---~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~--~~~i~v~~~~l~~ 280 (764)
+.++|+.++-+.. .+++.. |-..+++||+.||||||||.||-.||.++| .+|..++|+++++
T Consensus 39 dG~VGQ~~AReAaGvIv~mik~-----------gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS 105 (450)
T COG1224 39 DGLVGQEEAREAAGVIVKMIKQ-----------GKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYS 105 (450)
T ss_pred CcccchHHHHHhhhHHHHHHHh-----------CcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceeee
Confidence 4577777765553 334332 445689999999999999999999999997 4677777776644
No 344
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=4.5e-08 Score=99.94 Aligned_cols=97 Identities=34% Similarity=0.499 Sum_probs=73.1
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhhh-hccchhHH-HHHHHHHHHH----hcCCeEEEEccccccCCC
Q 004267 243 KGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS-KLAGESES-NLRKAFEEAE----KNAPSIIFIDEIDSIAPK 316 (764)
Q Consensus 243 ~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~-~~~g~~~~-~l~~vf~~a~----~~~p~il~iDEid~l~~~ 316 (764)
.+|||+||+|||||.||+.||+.++.+|-.-++..+.. .|+|+.-+ -+..+++.|. .....|++|||||.+..+
T Consensus 98 SNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIark 177 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARK 177 (408)
T ss_pred ccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhcc
Confidence 46999999999999999999999999998888877753 67776544 4456666542 344579999999999988
Q ss_pred CCCCch---HHHHHHHHHHHHHhhcc
Q 004267 317 REKTHG---EVERRIVSQLLTLMDGL 339 (764)
Q Consensus 317 ~~~~~~---~~~~~v~~~Ll~~ld~~ 339 (764)
..+++- -...-+.+.|+.++++-
T Consensus 178 SeN~SITRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 178 SENPSITRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred CCCCCcccccCchHHHHHHHHHHcCc
Confidence 755431 12245667788888763
No 345
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.68 E-value=6.7e-07 Score=96.32 Aligned_cols=169 Identities=12% Similarity=0.181 Sum_probs=108.4
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCe--------EEEEechh
Q 004267 206 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--------FFCINGPE 277 (764)
Q Consensus 206 ~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~--------~i~v~~~~ 277 (764)
+|++|.|.+..++.++..+... ..+..+||+||+|+|||++|+.+|..+.+. ++.+...+
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~~------------~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~ 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIKN------------RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHcC------------CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc
Confidence 5789999999999998887531 224468999999999999999999986321 22222110
Q ss_pred hhhhccchhHHHHHHHHHHH----HhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCC
Q 004267 278 IMSKLAGESESNLRKAFEEA----EKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNR 353 (764)
Q Consensus 278 l~~~~~g~~~~~l~~vf~~a----~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~ 353 (764)
+.. -.-..++.+.+.+ ......|++||++|.+.. ...+.|+..++... ..+++|.+|+.
T Consensus 70 --~~~--i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~-----------~a~naLLK~LEepp--~~t~~il~~~~ 132 (313)
T PRK05564 70 --KKS--IGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTE-----------QAQNAFLKTIEEPP--KGVFIILLCEN 132 (313)
T ss_pred --CCC--CCHHHHHHHHHHHhcCcccCCceEEEEechhhcCH-----------HHHHHHHHHhcCCC--CCeEEEEEeCC
Confidence 010 1123466655533 233456999999887632 23467888887643 34455555677
Q ss_pred CCCCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCCCchhhhHHhhhcCC
Q 004267 354 PNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHG 409 (764)
Q Consensus 354 ~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g 409 (764)
++.+-+.+++ |. ..+++..|+.++-...+...... . +...+..++..+.|
T Consensus 133 ~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~~~--~-~~~~~~~l~~~~~g 182 (313)
T PRK05564 133 LEQILDTIKS--RC-QIYKLNRLSKEEIEKFISYKYND--I-KEEEKKSAIAFSDG 182 (313)
T ss_pred hHhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHhcC--C-CHHHHHHHHHHcCC
Confidence 8899999887 55 57889999888877666544321 1 22234445555554
No 346
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.68 E-value=7.4e-08 Score=96.63 Aligned_cols=113 Identities=20% Similarity=0.307 Sum_probs=72.4
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCe--EEEEechhh-----------------------------------
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGPEI----------------------------------- 278 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~--~i~v~~~~l----------------------------------- 278 (764)
++.+.+++.|.|.||+|||||||+|.||+..... -+.++|..+
T Consensus 23 ~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~ 102 (248)
T COG1116 23 NLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGK 102 (248)
T ss_pred eeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhheehhhcccc
Confidence 4567889999999999999999999999875321 122222111
Q ss_pred ---------------------hhhccchhH--HHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHH
Q 004267 279 ---------------------MSKLAGESE--SNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTL 335 (764)
Q Consensus 279 ---------------------~~~~~g~~~--~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ 335 (764)
..+|..+.. .+-|-.+..|....|.+|++|| +.+..|.-....+.+.
T Consensus 103 ~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDE----------PFgALDalTR~~lq~~ 172 (248)
T COG1116 103 SKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDE----------PFGALDALTREELQDE 172 (248)
T ss_pred chHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcC----------CcchhhHHHHHHHHHH
Confidence 011111111 1234556677788999999999 5555555555666666
Q ss_pred hhcccCCCeEEEEEecCCCCCCChhh
Q 004267 336 MDGLKSRAHVIVIGATNRPNSIDPAL 361 (764)
Q Consensus 336 ld~~~~~~~v~vI~atn~~~~ld~al 361 (764)
+-.+..+.+..|+..||+ +++++
T Consensus 173 l~~lw~~~~~TvllVTHd---i~EAv 195 (248)
T COG1116 173 LLRLWEETRKTVLLVTHD---VDEAV 195 (248)
T ss_pred HHHHHHhhCCEEEEEeCC---HHHHH
Confidence 655555556677777887 45554
No 347
>PRK08116 hypothetical protein; Validated
Probab=98.67 E-value=4.4e-08 Score=102.53 Aligned_cols=123 Identities=24% Similarity=0.264 Sum_probs=74.7
Q ss_pred CcceeeeCCCCCChhHHHHHHHHHh---CCeeEEEecccchhccc----CcchHHHHHHHHHHhhCCCeEEEEecccchh
Q 004267 515 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWF----GESEANVREIFDKARQSAPCVLFFDELDSIA 587 (764)
Q Consensus 515 ~~gill~GppGtGKT~lak~lA~~~---~~~~i~v~~~~l~~~~~----g~se~~i~~~f~~a~~~~p~iifiDEid~l~ 587 (764)
..|++|+|++|||||+||.++|+++ +.+++.++.++++..+. +.+......+++..... .+|+|||+....
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~~--dlLviDDlg~e~ 191 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVNA--DLLILDDLGAER 191 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcCC--CEEEEecccCCC
Confidence 3579999999999999999999975 67888888888765432 21222233444444333 599999986421
Q ss_pred hccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCC-CC----CCccCCCCCcc---ceEEeecCCCH
Q 004267 588 TQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRP-DI----IDPALLRPGRL---DQLIYIPLPDE 654 (764)
Q Consensus 588 ~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~-~~----ld~allrpgRf---~~~i~~~~p~~ 654 (764)
..+.....|...++..... +..+|.|||.+ +. ++.++.. |+ ...|.++-||.
T Consensus 192 ------------~t~~~~~~l~~iin~r~~~-~~~~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 192 ------------DTEWAREKVYNIIDSRYRK-GLPTIVTTNLSLEELKNQYGKRIYD--RILEMCTPVENEGKSY 251 (268)
T ss_pred ------------CCHHHHHHHHHHHHHHHHC-CCCEEEECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcCh
Confidence 1122334444444433222 23477788764 33 4556655 64 34566666664
No 348
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.67 E-value=7.8e-07 Score=97.01 Aligned_cols=179 Identities=17% Similarity=0.204 Sum_probs=113.6
Q ss_pred CCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEE-----------
Q 004267 203 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFF----------- 271 (764)
Q Consensus 203 ~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i----------- 271 (764)
.+-.+++|.|.+..++.+..++... .-+..+||+||+|+||+++|.++|+.+-+.--
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~~------------rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~ 81 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRSG------------RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT 81 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc
Confidence 4457789999999999998887651 22447999999999999999999988732100
Q ss_pred --EEe--c-----------hhhh--hh---ccc------hhHHHHHHHHHHH----HhcCCeEEEEccccccCCCCCCCc
Q 004267 272 --CIN--G-----------PEIM--SK---LAG------ESESNLRKAFEEA----EKNAPSIIFIDEIDSIAPKREKTH 321 (764)
Q Consensus 272 --~v~--~-----------~~l~--~~---~~g------~~~~~l~~vf~~a----~~~~p~il~iDEid~l~~~~~~~~ 321 (764)
.+. + +++. .. ..+ -.-..++.+.+.+ ....+.|++|||+|.+-
T Consensus 82 ~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~------- 154 (365)
T PRK07471 82 SLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMN------- 154 (365)
T ss_pred cccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcC-------
Confidence 000 0 1110 00 000 0123355554433 23567899999998763
Q ss_pred hHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCCCchhhh
Q 004267 322 GEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLE 401 (764)
Q Consensus 322 ~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~~~~l~ 401 (764)
....+.|+..++... ...++|.+|+.++.+.+.+++ |+ ..+.++.|+.++-.+++...... ..+..+.
T Consensus 155 ----~~aanaLLK~LEepp--~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~~~L~~~~~~---~~~~~~~ 222 (365)
T PRK07471 155 ----ANAANALLKVLEEPP--ARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVIDALAAAGPD---LPDDPRA 222 (365)
T ss_pred ----HHHHHHHHHHHhcCC--CCeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHHHHHHHhccc---CCHHHHH
Confidence 234466777777543 355666688888888888876 66 67899999999888888754321 1122234
Q ss_pred HHhhhcCCCch
Q 004267 402 RIAKDTHGYVG 412 (764)
Q Consensus 402 ~la~~t~g~~~ 412 (764)
.++..+.|-.+
T Consensus 223 ~l~~~s~Gsp~ 233 (365)
T PRK07471 223 ALAALAEGSVG 233 (365)
T ss_pred HHHHHcCCCHH
Confidence 55556655443
No 349
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.66 E-value=1.8e-07 Score=107.95 Aligned_cols=199 Identities=14% Similarity=0.182 Sum_probs=111.7
Q ss_pred ccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEE-eccc---c--
Q 004267 478 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISV-KGPE---L-- 551 (764)
Q Consensus 478 v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v-~~~~---l-- 551 (764)
..++++.|.++..+.+..++... .++..+...++|+|||||||||+++++|++++..++.. +... .
T Consensus 81 ~~ldel~~~~~ki~~l~~~l~~~--------~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~~~ 152 (637)
T TIGR00602 81 ETQHELAVHKKKIEEVETWLKAQ--------VLENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQKN 152 (637)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhc--------ccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhccccc
Confidence 45678888887776666543321 01223334599999999999999999999987655441 1110 0
Q ss_pred -----------hhcccCcchHHHHHHHHHHhh----------CCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHH
Q 004267 552 -----------LTMWFGESEANVREIFDKARQ----------SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLT 610 (764)
Q Consensus 552 -----------~~~~~g~se~~i~~~f~~a~~----------~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~ 610 (764)
++.+ .......+.+...+.. ....|||+||++.+... ..+.+..+|.
T Consensus 153 ~~~~~~s~~~~~~~~-~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r-----------~~~~lq~lLr 220 (637)
T TIGR00602 153 DHKVTLSLESCFSNF-QSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR-----------DTRALHEILR 220 (637)
T ss_pred ccccchhhhhccccc-cchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh-----------hHHHHHHHHH
Confidence 0011 1122344555555542 24579999999987532 1223444544
Q ss_pred -hhcCCCCCCcEEEEecCCCCC--------------CCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCC-----
Q 004267 611 -EMDGMSAKKTVFIIGATNRPD--------------IIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPV----- 670 (764)
Q Consensus 611 -~ld~~~~~~~v~vi~aTn~~~--------------~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~----- 670 (764)
... ....-.+|+++|..|. .|.++++..-|.. +|.|++.+.....+.|+..++....
T Consensus 221 ~~~~--e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~-~I~FnPia~t~l~K~L~rIl~~E~~~~~~~ 297 (637)
T TIGR00602 221 WKYV--SIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVS-NISFNPIAPTIMKKFLNRIVTIEAKKNGEK 297 (637)
T ss_pred HHhh--cCCCceEEEEecCCccccccccccccchhcccCHhHhccccee-EEEeCCCCHHHHHHHHHHHHHhhhhccccc
Confidence 221 1222223333331121 1346776322553 8999999999977777777754311
Q ss_pred ---CCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q 004267 671 ---SKDVDLRALAKYTQGFSGADITEICQRACKYAI 703 (764)
Q Consensus 671 ---~~~~~l~~la~~~~g~sg~di~~~~~~a~~~a~ 703 (764)
.....+..++... ++|++..+..--..+.
T Consensus 298 ~~~p~~~~l~~I~~~s----~GDiRsAIn~LQf~~~ 329 (637)
T TIGR00602 298 IKVPKKTSVELLCQGC----SGDIRSAINSLQFSSS 329 (637)
T ss_pred cccCCHHHHHHHHHhC----CChHHHHHHHHHHHHh
Confidence 1223466666644 4588877766555544
No 350
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.65 E-value=1.1e-06 Score=95.50 Aligned_cols=110 Identities=23% Similarity=0.314 Sum_probs=69.9
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHh--CCeEE-EEe-----------------------------c---hhhhh
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANET--GAFFF-CIN-----------------------------G---PEIMS 280 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l--~~~~i-~v~-----------------------------~---~~l~~ 280 (764)
++.+..++...|+|++|+|||||+|+||+.- +.++- .+. + .++..
T Consensus 100 ~L~L~~GrRYGLvGrNG~GKsTLLRaia~~~v~~f~veqE~~g~~t~~~~~~l~~D~~~~dfl~~e~~l~~~~~l~ei~~ 179 (582)
T KOG0062|consen 100 NLTLSRGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEVRGDDTEALQSVLESDTERLDFLAEEKELLAGLTLEEIYD 179 (582)
T ss_pred ceeeecccccceeCCCCCcHHHHHHHHHhcCcCccCchhheeccchHHHhhhhhccHHHHHHHHhhhhhhccchHHHHHH
Confidence 3456778899999999999999999999821 00000 000 0 11111
Q ss_pred h---ccc-------------hhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCe
Q 004267 281 K---LAG-------------ESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAH 344 (764)
Q Consensus 281 ~---~~g-------------~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~ 344 (764)
+ -.| ....+++..+..|.-+.|++|++|| +.+..+-..+.+|-+.+..+.
T Consensus 180 ~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDE----------PTNhLDv~av~WLe~yL~t~~---- 245 (582)
T KOG0062|consen 180 KILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDE----------PTNHLDVVAVAWLENYLQTWK---- 245 (582)
T ss_pred HHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecC----------CcccchhHHHHHHHHHHhhCC----
Confidence 0 000 1123566677788889999999999 667777777788887776654
Q ss_pred EEEEEecCCCCCCCh
Q 004267 345 VIVIGATNRPNSIDP 359 (764)
Q Consensus 345 v~vI~atn~~~~ld~ 359 (764)
+.+|..+++...+|.
T Consensus 246 ~T~liVSHDr~FLn~ 260 (582)
T KOG0062|consen 246 ITSLIVSHDRNFLNT 260 (582)
T ss_pred ceEEEEeccHHHHHH
Confidence 344445676555543
No 351
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.65 E-value=8.6e-08 Score=112.77 Aligned_cols=32 Identities=25% Similarity=0.363 Sum_probs=28.1
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 267 (764)
++.+.+++.+.|+||+|||||||+++|++.+.
T Consensus 36 s~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~ 67 (623)
T PRK10261 36 SFSLQRGETLAIVGESGSGKSVTALALMRLLE 67 (623)
T ss_pred EEEECCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 34567889999999999999999999998763
No 352
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.65 E-value=2.9e-07 Score=103.59 Aligned_cols=122 Identities=26% Similarity=0.389 Sum_probs=77.2
Q ss_pred CcceeeeCCCCCChhHHHHHHHHHhCCe--eEEEecccchh--------------------------cccCcchHHHHHH
Q 004267 515 SKGVLFYGPPGCGKTLLAKAIANECQAN--FISVKGPELLT--------------------------MWFGESEANVREI 566 (764)
Q Consensus 515 ~~gill~GppGtGKT~lak~lA~~~~~~--~i~v~~~~l~~--------------------------~~~g~se~~i~~~ 566 (764)
...++|+||||||||++++.+++..... -..+....+.+ ..+|.....-.-.
T Consensus 210 G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~ 289 (506)
T PRK09862 210 GHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGE 289 (506)
T ss_pred CcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCccCCCccchHHHHhCCCceehhhH
Confidence 3459999999999999999999864211 11111111110 0112111111234
Q ss_pred HHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCC-----------CCCcEEEEecCCCCC----
Q 004267 567 FDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-----------AKKTVFIIGATNRPD---- 631 (764)
Q Consensus 567 f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~-----------~~~~v~vi~aTn~~~---- 631 (764)
+..|... ++|+||++.+ ...+++.|++-|+... -..++.+|+|+|...
T Consensus 290 l~~A~gG---vLfLDEi~e~--------------~~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~ 352 (506)
T PRK09862 290 ISLAHNG---VLFLDELPEF--------------ERRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHY 352 (506)
T ss_pred hhhccCC---EEecCCchhC--------------CHHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCccceec
Confidence 5556554 9999999774 2456777777664321 134688999999742
Q ss_pred -----------------CCCccCCCCCccceEEeecCCCHH
Q 004267 632 -----------------IIDPALLRPGRLDQLIYIPLPDED 655 (764)
Q Consensus 632 -----------------~ld~allrpgRf~~~i~~~~p~~~ 655 (764)
.|..+++. |||..+.++.|+.+
T Consensus 353 ~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~ 391 (506)
T PRK09862 353 QGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPG 391 (506)
T ss_pred CCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHH
Confidence 46678887 99999999998754
No 353
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.64 E-value=7.4e-08 Score=111.95 Aligned_cols=31 Identities=29% Similarity=0.401 Sum_probs=27.6
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANET 266 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l 266 (764)
++.+.++..+.|+||+|+|||||++.|++..
T Consensus 25 s~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~ 55 (552)
T TIGR03719 25 SLSFFPGAKIGVLGLNGAGKSTLLRIMAGVD 55 (552)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3456888899999999999999999999876
No 354
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.63 E-value=5.3e-07 Score=90.96 Aligned_cols=40 Identities=43% Similarity=0.692 Sum_probs=34.1
Q ss_pred CCcceeeeCCCCCChhHHHHHHHHHhC--CeeEEEecccchh
Q 004267 514 PSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLT 553 (764)
Q Consensus 514 ~~~gill~GppGtGKT~lak~lA~~~~--~~~i~v~~~~l~~ 553 (764)
..+.+||.||||||||.||-+++.++| .||....|+++++
T Consensus 63 aGravLlaGppgtGKTAlAlaisqELG~kvPFcpmvgSEvyS 104 (456)
T KOG1942|consen 63 AGRAVLLAGPPGTGKTALALAISQELGPKVPFCPMVGSEVYS 104 (456)
T ss_pred cCcEEEEecCCCCchhHHHHHHHHHhCCCCCcccccchhhhh
Confidence 356799999999999999999999985 5788888887764
No 355
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.62 E-value=4e-08 Score=96.81 Aligned_cols=46 Identities=28% Similarity=0.499 Sum_probs=35.5
Q ss_pred cccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Q 004267 207 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (764)
Q Consensus 207 ~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 267 (764)
|.||.|++..+..+.-+..- +.++||+||||||||++|+.+...++
T Consensus 2 f~dI~GQe~aKrAL~iAAaG---------------~h~lLl~GppGtGKTmlA~~l~~lLP 47 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAAG---------------GHHLLLIGPPGTGKTMLARRLPSLLP 47 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHHC---------------C--EEEES-CCCTHHHHHHHHHHCS-
T ss_pred hhhhcCcHHHHHHHHHHHcC---------------CCCeEEECCCCCCHHHHHHHHHHhCC
Confidence 67899999998887544432 35899999999999999999998774
No 356
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.60 E-value=1.1e-07 Score=102.66 Aligned_cols=169 Identities=23% Similarity=0.279 Sum_probs=101.5
Q ss_pred CcceeeeCCCCCChhHHHHHHHHHh---CCeeEEEecccch-----hcccCcchH-------HHHHHHHHHhhCCCeEEE
Q 004267 515 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELL-----TMWFGESEA-------NVREIFDKARQSAPCVLF 579 (764)
Q Consensus 515 ~~gill~GppGtGKT~lak~lA~~~---~~~~i~v~~~~l~-----~~~~g~se~-------~i~~~f~~a~~~~p~iif 579 (764)
...|+|+|++||||+++|+++-..+ +.+|+.++|..+- ..++|.... .....|..|. ...+|
T Consensus 29 ~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~~~lfg~~~~~~~g~~~~~~g~l~~a~---gGtL~ 105 (326)
T PRK11608 29 DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERAD---GGTLF 105 (326)
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHHHHHccccccccCCcccccCCchhccC---CCeEE
Confidence 3459999999999999999998764 4689999998752 112222110 0112344443 34899
Q ss_pred EecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCC--C-------CCcEEEEecCCCC-------CCCCccCCCCCcc
Q 004267 580 FDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS--A-------KKTVFIIGATNRP-------DIIDPALLRPGRL 643 (764)
Q Consensus 580 iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~--~-------~~~v~vi~aTn~~-------~~ld~allrpgRf 643 (764)
||||+.+.. .+...|+..++... . ..++-||+||+.. ..+.+.|.. ||
T Consensus 106 l~~i~~L~~--------------~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l 169 (326)
T PRK11608 106 LDELATAPM--------------LVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLD--RL 169 (326)
T ss_pred eCChhhCCH--------------HHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchhHHHHHHcCCchHHHHH--hc
Confidence 999999743 23444555444321 0 1257788888763 234455555 77
Q ss_pred -ceEEeecCCCH--HHHHHHHHHHhccC----CCC--Cccc---HHHHHHHCCCCCHHHHHHHHHHHHHHH
Q 004267 644 -DQLIYIPLPDE--DSRHQIFKACLRKS----PVS--KDVD---LRALAKYTQGFSGADITEICQRACKYA 702 (764)
Q Consensus 644 -~~~i~~~~p~~--~~r~~Il~~~~~~~----~~~--~~~~---l~~la~~~~g~sg~di~~~~~~a~~~a 702 (764)
...|++|+... ++...+++.++++. +.. ..++ +..|..+.---+-++|+++++.|+..+
T Consensus 170 ~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~~y~WPGNvrEL~~vl~~a~~~~ 240 (326)
T PRK11608 170 AFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 (326)
T ss_pred CCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhc
Confidence 45777777643 45566666665322 111 1222 344444443446789999999988754
No 357
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.60 E-value=3.4e-07 Score=101.20 Aligned_cols=136 Identities=21% Similarity=0.258 Sum_probs=75.2
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCC--eEEEEech-hhhhhccchh-HHHH--HHHHHHHHhc---CCeEEEEccc
Q 004267 240 KPPKGILLYGPPGSGKTLIARAVANETGA--FFFCINGP-EIMSKLAGES-ESNL--RKAFEEAEKN---APSIIFIDEI 310 (764)
Q Consensus 240 ~~~~~vLL~GppGtGKTtLar~la~~l~~--~~i~v~~~-~l~~~~~g~~-~~~l--~~vf~~a~~~---~p~il~iDEi 310 (764)
..+.+|||.||||||||++|++|+...+. +|..+.+. .......|.. -... ..-|...... ...++|+|||
T Consensus 37 lag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI 116 (498)
T PRK13531 37 LSGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYQRLTSGYLPEAEIVFLDEI 116 (498)
T ss_pred ccCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhhhcCchhhhcCCccccccEEeeccc
Confidence 45788999999999999999999997653 33322221 0111112211 0000 1112211111 2348999999
Q ss_pred cccCCCCCCCchHHHHHHHHHHHHHhhccc--------CCCeEEEEEecCCCCC---CChhhhccCCcceEEEecCCCh-
Q 004267 311 DSIAPKREKTHGEVERRIVSQLLTLMDGLK--------SRAHVIVIGATNRPNS---IDPALRRFGRFDREIDIGVPDE- 378 (764)
Q Consensus 311 d~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~--------~~~~v~vI~atn~~~~---ld~al~r~~rf~~~i~i~~p~~- 378 (764)
..+. ......|+..|..-. .-+..++++|||.... ..+++.. ||...+.++.|+.
T Consensus 117 ~ras-----------p~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~D--RFliri~vp~l~~~ 183 (498)
T PRK13531 117 WKAG-----------PAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALYD--RMLIRLWLDKVQDK 183 (498)
T ss_pred ccCC-----------HHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhHh--hEEEEEECCCCCch
Confidence 7543 234567777773211 1112344445564322 2235655 8888899999974
Q ss_pred HHHHHHHHHH
Q 004267 379 VGRLEVLRIH 388 (764)
Q Consensus 379 ~~R~~il~~~ 388 (764)
++-.+++...
T Consensus 184 ~~e~~lL~~~ 193 (498)
T PRK13531 184 ANFRSMLTSQ 193 (498)
T ss_pred HHHHHHHHcc
Confidence 4446777643
No 358
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.60 E-value=6.2e-07 Score=100.71 Aligned_cols=204 Identities=22% Similarity=0.302 Sum_probs=132.1
Q ss_pred ceeeeCCCCCChhHHHHHHHHHh----------CCeeEEEecccchh----------cccCcc------hHHHHHHHHHH
Q 004267 517 GVLFYGPPGCGKTLLAKAIANEC----------QANFISVKGPELLT----------MWFGES------EANVREIFDKA 570 (764)
Q Consensus 517 gill~GppGtGKT~lak~lA~~~----------~~~~i~v~~~~l~~----------~~~g~s------e~~i~~~f~~a 570 (764)
.+.+.|-||||||.++..+..++ .+.|+.|+|-.|.+ .+-|+. -..+..-|..+
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~ 503 (767)
T KOG1514|consen 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVP 503 (767)
T ss_pred eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccC
Confidence 37888999999999999988843 46789999876643 222332 12344444422
Q ss_pred -hhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCCCCCccCC-C-CCccc-eE
Q 004267 571 -RQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALL-R-PGRLD-QL 646 (764)
Q Consensus 571 -~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~all-r-pgRf~-~~ 646 (764)
....++|+++||.|.|..+. ..|+.-|+..-- .+..+++||+..|-.+....-|. | .+|++ ..
T Consensus 504 k~~~~~~VvLiDElD~Lvtr~-----------QdVlYn~fdWpt--~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tR 570 (767)
T KOG1514|consen 504 KPKRSTTVVLIDELDILVTRS-----------QDVLYNIFDWPT--LKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTR 570 (767)
T ss_pred CCCCCCEEEEeccHHHHhccc-----------HHHHHHHhcCCc--CCCCceEEEEecccccCHHHHhccchhhhcccee
Confidence 23457999999999998742 345544443322 24567888888887665433222 1 12655 57
Q ss_pred EeecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCH--HHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCCCccc
Q 004267 647 IYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSG--ADITEICQRACKYAIRENIEKDIERERRRRDNPEAM 724 (764)
Q Consensus 647 i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~sg--~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~ 724 (764)
|.|.+++..+..+|+...++....-...-++.+|+.-.-.|| +....+|++|+..|-.+.. ..
T Consensus 571 i~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA~Eia~~~~~-~~-------------- 635 (767)
T KOG1514|consen 571 ICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRAAEIAEERNV-KG-------------- 635 (767)
T ss_pred eecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhhcc-cc--------------
Confidence 889999999999999999977622222123333333222333 4556789999988887764 11
Q ss_pred cccccccccccccHHHHHHHHHhcCCCC
Q 004267 725 DEDAAEDEVSEIKAAHFEESMKFARRSI 752 (764)
Q Consensus 725 ~~~~~~~~~~~i~~~~f~~a~~~~~~s~ 752 (764)
..+....|++.|+.+|+.++..+.
T Consensus 636 ----k~~~~q~v~~~~v~~Ai~em~~~~ 659 (767)
T KOG1514|consen 636 ----KLAVSQLVGILHVMEAINEMLASP 659 (767)
T ss_pred ----cccccceeehHHHHHHHHHHhhhh
Confidence 012245799999999999987654
No 359
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.59 E-value=4.9e-07 Score=93.90 Aligned_cols=177 Identities=16% Similarity=0.290 Sum_probs=104.4
Q ss_pred CcceeeeCCCCCChhHHHHHHHHHh---------CCeeEEEecccchh---cc----------c--Cc-chHHHHHHHHH
Q 004267 515 SKGVLFYGPPGCGKTLLAKAIANEC---------QANFISVKGPELLT---MW----------F--GE-SEANVREIFDK 569 (764)
Q Consensus 515 ~~gill~GppGtGKT~lak~lA~~~---------~~~~i~v~~~~l~~---~~----------~--g~-se~~i~~~f~~ 569 (764)
..++||+|++|.|||++++..+... ..|.+.+..+.--+ -| + .. ..+.-..+..-
T Consensus 61 mp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~l 140 (302)
T PF05621_consen 61 MPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRL 140 (302)
T ss_pred CCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHH
Confidence 3569999999999999999998753 23666666542210 00 0 11 11222334455
Q ss_pred HhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCC--cEEEEecCCCCC--CCCccCCCCCccce
Q 004267 570 ARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKK--TVFIIGATNRPD--IIDPALLRPGRLDQ 645 (764)
Q Consensus 570 a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~--~v~vi~aTn~~~--~ld~allrpgRf~~ 645 (764)
.+...+.+|+|||++.++.-+ ....+ ++|+.+..+...- .++.+||-.-.. .-|+-+-+ ||+
T Consensus 141 lr~~~vrmLIIDE~H~lLaGs--------~~~qr---~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~--RF~- 206 (302)
T PF05621_consen 141 LRRLGVRMLIIDEFHNLLAGS--------YRKQR---EFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLAS--RFE- 206 (302)
T ss_pred HHHcCCcEEEeechHHHhccc--------HHHHH---HHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHh--ccC-
Confidence 566778899999999976421 11122 2233333222222 344444432222 33666666 997
Q ss_pred EEeecCCCH-HHHHHHHHHHhccCCCCCccc------HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Q 004267 646 LIYIPLPDE-DSRHQIFKACLRKSPVSKDVD------LRALAKYTQGFSGADITEICQRACKYAIREN 706 (764)
Q Consensus 646 ~i~~~~p~~-~~r~~Il~~~~~~~~~~~~~~------l~~la~~~~g~sg~di~~~~~~a~~~a~~~~ 706 (764)
.+.+|.... ++...++..+-+..|+...-+ ...+-..++|.+| ++..+++.|+..|++..
T Consensus 207 ~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG-~l~~ll~~aA~~AI~sG 273 (302)
T PF05621_consen 207 PFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIG-ELSRLLNAAAIAAIRSG 273 (302)
T ss_pred CccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchH-HHHHHHHHHHHHHHhcC
Confidence 666676543 455667777766666543222 2445567777665 78889999999999875
No 360
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.59 E-value=2.4e-07 Score=99.95 Aligned_cols=169 Identities=21% Similarity=0.274 Sum_probs=101.9
Q ss_pred CcceeeeCCCCCChhHHHHHHHHHh---CCeeEEEecccchhc-----ccCcch-------HHHHHHHHHHhhCCCeEEE
Q 004267 515 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTM-----WFGESE-------ANVREIFDKARQSAPCVLF 579 (764)
Q Consensus 515 ~~gill~GppGtGKT~lak~lA~~~---~~~~i~v~~~~l~~~-----~~g~se-------~~i~~~f~~a~~~~p~iif 579 (764)
...|||+|++||||+++|+++-..+ +.+|+.++|..+... .+|... ..-...|+.|. ...||
T Consensus 22 ~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~~~G~~~~a~---gGtL~ 98 (329)
T TIGR02974 22 DRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQGRFERAD---GGTLF 98 (329)
T ss_pred CCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccccccccCcccccCCchhhCC---CCEEE
Confidence 3459999999999999999997755 479999999765321 112110 00112344443 35999
Q ss_pred EecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCC---------CCCcEEEEecCCCC-------CCCCccCCCCCcc
Q 004267 580 FDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS---------AKKTVFIIGATNRP-------DIIDPALLRPGRL 643 (764)
Q Consensus 580 iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~---------~~~~v~vi~aTn~~-------~~ld~allrpgRf 643 (764)
||||+.+.. .+...|+..++... ...++-+|++||.. ..+.+.|.. ||
T Consensus 99 Ldei~~L~~--------------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~--rl 162 (329)
T TIGR02974 99 LDELATASL--------------LVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLD--RL 162 (329)
T ss_pred eCChHhCCH--------------HHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHH--Hh
Confidence 999999743 33444555554321 12357888888763 133445554 66
Q ss_pred c-eEEeecCCC--HHHHHHHHHHHhccC----CCC--Cccc---HHHHHHHCCCCCHHHHHHHHHHHHHHH
Q 004267 644 D-QLIYIPLPD--EDSRHQIFKACLRKS----PVS--KDVD---LRALAKYTQGFSGADITEICQRACKYA 702 (764)
Q Consensus 644 ~-~~i~~~~p~--~~~r~~Il~~~~~~~----~~~--~~~~---l~~la~~~~g~sg~di~~~~~~a~~~a 702 (764)
. ..|.+|+.. .++...+++.++.+. +.. ..++ +..|..+.---+-++|++++..|+..+
T Consensus 163 ~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 163 AFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred cchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHHHHHhC
Confidence 3 467777664 355666666655331 111 1222 445555543457789999999988765
No 361
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.58 E-value=1.3e-07 Score=96.72 Aligned_cols=114 Identities=20% Similarity=0.278 Sum_probs=74.0
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCe--EEEEechhhh--------------------------------h-
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGPEIM--------------------------------S- 280 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~--~i~v~~~~l~--------------------------------~- 280 (764)
++.+++++.+.|.||+|||||||+|+|++.+... -+.++|.++. +
T Consensus 22 s~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR 101 (258)
T COG1120 22 SFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGR 101 (258)
T ss_pred eEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcC
Confidence 3456788899999999999999999999976421 1333332110 0
Q ss_pred ----hccc------------------------------hhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHH
Q 004267 281 ----KLAG------------------------------ESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVER 326 (764)
Q Consensus 281 ----~~~g------------------------------~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~ 326 (764)
.+.+ ...++-+..+..|..+.|.++++|| +.+..|-
T Consensus 102 ~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDE----------PTs~LDi 171 (258)
T COG1120 102 YPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDE----------PTSHLDI 171 (258)
T ss_pred CcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCC----------CccccCH
Confidence 0000 0122334556788889999999999 4444444
Q ss_pred HHHHHHHHHhhcccCCCeEEEEEecCCCCCCChhhh
Q 004267 327 RIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALR 362 (764)
Q Consensus 327 ~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld~al~ 362 (764)
.-.-.+++++..+....+..+|.++|++ +-+++
T Consensus 172 ~~Q~evl~ll~~l~~~~~~tvv~vlHDl---N~A~r 204 (258)
T COG1120 172 AHQIEVLELLRDLNREKGLTVVMVLHDL---NLAAR 204 (258)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEecCH---HHHHH
Confidence 4455677777777766667777788874 44554
No 362
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.58 E-value=2.4e-08 Score=90.26 Aligned_cols=102 Identities=27% Similarity=0.364 Sum_probs=54.8
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCeEEEEech-hhh-----hhccchh-HH----HHHHHHHHHHhcCCeEEEEccccc
Q 004267 244 GILLYGPPGSGKTLIARAVANETGAFFFCINGP-EIM-----SKLAGES-ES----NLRKAFEEAEKNAPSIIFIDEIDS 312 (764)
Q Consensus 244 ~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~-~l~-----~~~~g~~-~~----~l~~vf~~a~~~~p~il~iDEid~ 312 (764)
+|||.|+||+|||++++++|+.++..|..|.+. ++. +...-.. .. .-+-+| ..|+++|||..
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif-------~~ill~DEiNr 73 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF-------TNILLADEINR 73 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT--------SSEEEEETGGG
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh-------hceeeeccccc
Confidence 589999999999999999999999999888763 332 1111000 00 001122 24999999986
Q ss_pred cCCCCCCCchHHHHHHHHHHHHHhhccc---------CCCeEEEEEecCCCC-----CCChhhhc
Q 004267 313 IAPKREKTHGEVERRIVSQLLTLMDGLK---------SRAHVIVIGATNRPN-----SIDPALRR 363 (764)
Q Consensus 313 l~~~~~~~~~~~~~~v~~~Ll~~ld~~~---------~~~~v~vI~atn~~~-----~ld~al~r 363 (764)
..+ ++.+.|++.|..-. -...++||||.|+.+ .+++++..
T Consensus 74 app-----------ktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D 127 (131)
T PF07726_consen 74 APP-----------KTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD 127 (131)
T ss_dssp S-H-----------HHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT
T ss_pred CCH-----------HHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc
Confidence 643 34567777775421 234688999999765 45566554
No 363
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=98.58 E-value=2e-06 Score=98.91 Aligned_cols=78 Identities=23% Similarity=0.236 Sum_probs=49.3
Q ss_pred cCCCCcceeeeCCCCCChhHHHHHHHHHh---CCeeEEEecccchh--------------cc--------cC------cc
Q 004267 511 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLT--------------MW--------FG------ES 559 (764)
Q Consensus 511 ~~~~~~gill~GppGtGKT~lak~lA~~~---~~~~i~v~~~~l~~--------------~~--------~g------~s 559 (764)
|++....++++|+||+|||+++..++... +.+.+.+...+-.. .+ .. ..
T Consensus 269 G~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~ 348 (509)
T PRK09302 269 GFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSWGIDLEKMEEKGLLKIICARPESYGL 348 (509)
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHcCCChHHHhhcCCceeecCCcccCCH
Confidence 56666669999999999999999887643 55555554321110 00 00 01
Q ss_pred hHHHHHHHHHHhhCCCeEEEEecccchhh
Q 004267 560 EANVREIFDKARQSAPCVLFFDELDSIAT 588 (764)
Q Consensus 560 e~~i~~~f~~a~~~~p~iifiDEid~l~~ 588 (764)
+..+..+-+......+.++++|-+..+..
T Consensus 349 ~~~~~~i~~~i~~~~~~~vVIDslt~l~~ 377 (509)
T PRK09302 349 EDHLIIIKREIEEFKPSRVAIDPLSALAR 377 (509)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 22334444555566788999999988764
No 364
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.58 E-value=3.7e-07 Score=98.88 Aligned_cols=122 Identities=27% Similarity=0.394 Sum_probs=82.7
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhC------------------------CeEEEEechhhhhhccchhHHHHHHHHHHHHh
Q 004267 244 GILLYGPPGSGKTLIARAVANETG------------------------AFFFCINGPEIMSKLAGESESNLRKAFEEAEK 299 (764)
Q Consensus 244 ~vLL~GppGtGKTtLar~la~~l~------------------------~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~ 299 (764)
.+||+||||+|||++|.++|+.+. ..++.++.++..... .....++.+-+....
T Consensus 26 alL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~ 103 (325)
T COG0470 26 ALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKID--IIVEQVRELAEFLSE 103 (325)
T ss_pred eeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCc--chHHHHHHHHHHhcc
Confidence 599999999999999999999986 356777765543321 123445555444322
Q ss_pred ----cCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCChhhhccCCcceEEEecC
Q 004267 300 ----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGV 375 (764)
Q Consensus 300 ----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~rf~~~i~i~~ 375 (764)
...-+++|||+|.+.. ...+.++..+..... +..+|.+||.++.+-+.+++ |. ..+.+..
T Consensus 104 ~~~~~~~kviiidead~mt~-----------~A~nallk~lEep~~--~~~~il~~n~~~~il~tI~S--Rc-~~i~f~~ 167 (325)
T COG0470 104 SPLEGGYKVVIIDEADKLTE-----------DAANALLKTLEEPPK--NTRFILITNDPSKILPTIRS--RC-QRIRFKP 167 (325)
T ss_pred CCCCCCceEEEeCcHHHHhH-----------HHHHHHHHHhccCCC--CeEEEEEcCChhhccchhhh--cc-eeeecCC
Confidence 3357999999998754 234566667766444 56667788899999888887 55 4567766
Q ss_pred CChHHHHH
Q 004267 376 PDEVGRLE 383 (764)
Q Consensus 376 p~~~~R~~ 383 (764)
|....+..
T Consensus 168 ~~~~~~i~ 175 (325)
T COG0470 168 PSRLEAIA 175 (325)
T ss_pred chHHHHHH
Confidence 55544433
No 365
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.57 E-value=6.6e-07 Score=95.55 Aligned_cols=128 Identities=19% Similarity=0.293 Sum_probs=91.2
Q ss_pred CCcceeeeCCCCCChhHHHHHHHHHhCC------------------------eeEEEecccchhcccCcchHHHHHHHHH
Q 004267 514 PSKGVLFYGPPGCGKTLLAKAIANECQA------------------------NFISVKGPELLTMWFGESEANVREIFDK 569 (764)
Q Consensus 514 ~~~gill~GppGtGKT~lak~lA~~~~~------------------------~~i~v~~~~l~~~~~g~se~~i~~~f~~ 569 (764)
.+.++||+||.|+||+++|+++|..+-+ .++.+...+ ++. -.-..||++-+.
T Consensus 23 l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--~~~--I~id~iR~l~~~ 98 (325)
T PRK06871 23 GHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPID--NKD--IGVDQVREINEK 98 (325)
T ss_pred cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcccc--CCC--CCHHHHHHHHHH
Confidence 4456999999999999999999986421 122222110 111 124456665544
Q ss_pred H----hhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCCCCCccCCCCCccce
Q 004267 570 A----RQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQ 645 (764)
Q Consensus 570 a----~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~ 645 (764)
+ ......|++||++|.+- ...-|.||..|+. +..++++|.+|+.++.|-|.+++ |+.
T Consensus 99 ~~~~~~~g~~KV~iI~~a~~m~--------------~~AaNaLLKtLEE--Pp~~~~fiL~t~~~~~llpTI~S--RC~- 159 (325)
T PRK06871 99 VSQHAQQGGNKVVYIQGAERLT--------------EAAANALLKTLEE--PRPNTYFLLQADLSAALLPTIYS--RCQ- 159 (325)
T ss_pred HhhccccCCceEEEEechhhhC--------------HHHHHHHHHHhcC--CCCCeEEEEEECChHhCchHHHh--hce-
Confidence 4 34455799999999973 3456889999986 55677888888889999999887 885
Q ss_pred EEeecCCCHHHHHHHHHHH
Q 004267 646 LIYIPLPDEDSRHQIFKAC 664 (764)
Q Consensus 646 ~i~~~~p~~~~r~~Il~~~ 664 (764)
.+.|++|+.++..+.+...
T Consensus 160 ~~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 160 TWLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred EEeCCCCCHHHHHHHHHHH
Confidence 7889999988877777654
No 366
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=5.5e-07 Score=92.83 Aligned_cols=82 Identities=28% Similarity=0.515 Sum_probs=60.2
Q ss_pred eEEEEccccccCCCCCCCchHHHH-HHHHHHHHHhhccc--------CCCeEEEEEec----CCCCCCChhhhccCCcce
Q 004267 303 SIIFIDEIDSIAPKREKTHGEVER-RIVSQLLTLMDGLK--------SRAHVIVIGAT----NRPNSIDPALRRFGRFDR 369 (764)
Q Consensus 303 ~il~iDEid~l~~~~~~~~~~~~~-~v~~~Ll~~ld~~~--------~~~~v~vI~at----n~~~~ld~al~r~~rf~~ 369 (764)
.|+||||||.++.+.+.+.+++.+ -+...|+-++.+-. ...++++|++- ..|.++-|.|.. ||.-
T Consensus 252 GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQG--RfPI 329 (444)
T COG1220 252 GIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQG--RFPI 329 (444)
T ss_pred CeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcC--CCce
Confidence 699999999999887644334433 34456777776532 23478888643 467888888874 9999
Q ss_pred EEEecCCChHHHHHHHH
Q 004267 370 EIDIGVPDEVGRLEVLR 386 (764)
Q Consensus 370 ~i~i~~p~~~~R~~il~ 386 (764)
.+++...+.+.-..||.
T Consensus 330 RVEL~~Lt~~Df~rILt 346 (444)
T COG1220 330 RVELDALTKEDFERILT 346 (444)
T ss_pred EEEcccCCHHHHHHHHc
Confidence 99999999988877774
No 367
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.55 E-value=1.3e-07 Score=91.47 Aligned_cols=118 Identities=28% Similarity=0.379 Sum_probs=78.6
Q ss_pred CCCcceeeeCCCCCChhHHHHHHHHHhC-----------------------CeeEEEecccchhcccCcchHHHHHHHHH
Q 004267 513 SPSKGVLFYGPPGCGKTLLAKAIANECQ-----------------------ANFISVKGPELLTMWFGESEANVREIFDK 569 (764)
Q Consensus 513 ~~~~gill~GppGtGKT~lak~lA~~~~-----------------------~~~i~v~~~~l~~~~~g~se~~i~~~f~~ 569 (764)
+.+..+||+||+|+||+++|.++|..+- ..++.++..+-.. .-....++.+.+.
T Consensus 17 ~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~---~i~i~~ir~i~~~ 93 (162)
T PF13177_consen 17 RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK---SIKIDQIREIIEF 93 (162)
T ss_dssp C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS---SBSHHHHHHHHHH
T ss_pred CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc---hhhHHHHHHHHHH
Confidence 3455699999999999999999999642 1233333322100 1124567777776
Q ss_pred HhhC----CCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCCCCCccCCCCCccce
Q 004267 570 ARQS----APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQ 645 (764)
Q Consensus 570 a~~~----~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~ 645 (764)
+... ...|++|||+|.+. ....|.||..|+.. ..++++|.+|+.++.|-|.+++ |+-
T Consensus 94 ~~~~~~~~~~KviiI~~ad~l~--------------~~a~NaLLK~LEep--p~~~~fiL~t~~~~~il~TI~S--Rc~- 154 (162)
T PF13177_consen 94 LSLSPSEGKYKVIIIDEADKLT--------------EEAQNALLKTLEEP--PENTYFILITNNPSKILPTIRS--RCQ- 154 (162)
T ss_dssp CTSS-TTSSSEEEEEETGGGS---------------HHHHHHHHHHHHST--TTTEEEEEEES-GGGS-HHHHT--TSE-
T ss_pred HHHHHhcCCceEEEeehHhhhh--------------HHHHHHHHHHhcCC--CCCEEEEEEECChHHChHHHHh--hce-
Confidence 5443 45799999999863 45678999999964 4578888888889988888887 774
Q ss_pred EEeecCC
Q 004267 646 LIYIPLP 652 (764)
Q Consensus 646 ~i~~~~p 652 (764)
.+.|++.
T Consensus 155 ~i~~~~l 161 (162)
T PF13177_consen 155 VIRFRPL 161 (162)
T ss_dssp EEEE---
T ss_pred EEecCCC
Confidence 6666653
No 368
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.55 E-value=6.8e-07 Score=87.56 Aligned_cols=133 Identities=18% Similarity=0.259 Sum_probs=81.7
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCC-----eEEEEec
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA-----FFFCING 275 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~-----~~i~v~~ 275 (764)
+..+..+.||+|.++.++.+.-+..- ..-.+++|.|||||||||-+.++|.++=. -+..+|.
T Consensus 20 KYrP~~l~dIVGNe~tv~rl~via~~-------------gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNA 86 (333)
T KOG0991|consen 20 KYRPSVLQDIVGNEDTVERLSVIAKE-------------GNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNA 86 (333)
T ss_pred hhCchHHHHhhCCHHHHHHHHHHHHc-------------CCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccC
Confidence 45667789999999999988766543 22347999999999999999999998632 2456666
Q ss_pred hhhhhhccchhHHHHHHHHHHHHh-cC---CeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEec
Q 004267 276 PEIMSKLAGESESNLRKAFEEAEK-NA---PSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGAT 351 (764)
Q Consensus 276 ~~l~~~~~g~~~~~l~~vf~~a~~-~~---p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~at 351 (764)
++-.+- .-...+++ .|.+-+- .. -.|+++||+|++... ..+.|..-|+-+....++. .+|
T Consensus 87 SdeRGI--DvVRn~IK-~FAQ~kv~lp~grhKIiILDEADSMT~g-----------AQQAlRRtMEiyS~ttRFa--laC 150 (333)
T KOG0991|consen 87 SDERGI--DVVRNKIK-MFAQKKVTLPPGRHKIIILDEADSMTAG-----------AQQALRRTMEIYSNTTRFA--LAC 150 (333)
T ss_pred cccccc--HHHHHHHH-HHHHhhccCCCCceeEEEeeccchhhhH-----------HHHHHHHHHHHHcccchhh--hhh
Confidence 543211 11122333 3333222 22 259999999977421 2244555566555544444 467
Q ss_pred CCCCCCChhhh
Q 004267 352 NRPNSIDPALR 362 (764)
Q Consensus 352 n~~~~ld~al~ 362 (764)
|..+.|-+.+.
T Consensus 151 N~s~KIiEPIQ 161 (333)
T KOG0991|consen 151 NQSEKIIEPIQ 161 (333)
T ss_pred cchhhhhhhHH
Confidence 76665544333
No 369
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.55 E-value=1.3e-06 Score=93.94 Aligned_cols=148 Identities=18% Similarity=0.281 Sum_probs=96.9
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCe------------------------EEEEechhhhhhccchhHHHHHHHHHHH
Q 004267 242 PKGILLYGPPGSGKTLIARAVANETGAF------------------------FFCINGPEIMSKLAGESESNLRKAFEEA 297 (764)
Q Consensus 242 ~~~vLL~GppGtGKTtLar~la~~l~~~------------------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a 297 (764)
+..+||+||+|+|||++|+.+|..+.+. ++.+....- ++ .-.-..+|.+.+.+
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~~--~i~id~iR~l~~~~ 98 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-DK--TIKVDQVRELVSFV 98 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-CC--CCCHHHHHHHHHHH
Confidence 4579999999999999999999987431 122211000 00 01234566665544
Q ss_pred Hh----cCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCChhhhccCCcceEEEe
Q 004267 298 EK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDI 373 (764)
Q Consensus 298 ~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~rf~~~i~i 373 (764)
.. ....|++||++|.+.. ...+.|+..++.-. .++++|.+|+.++.+.|.+++ |. ..+.+
T Consensus 99 ~~~~~~~~~kv~iI~~a~~m~~-----------~aaNaLLK~LEEPp--~~~~fiL~t~~~~~ll~TI~S--Rc-~~~~~ 162 (328)
T PRK05707 99 VQTAQLGGRKVVLIEPAEAMNR-----------NAANALLKSLEEPS--GDTVLLLISHQPSRLLPTIKS--RC-QQQAC 162 (328)
T ss_pred hhccccCCCeEEEECChhhCCH-----------HHHHHHHHHHhCCC--CCeEEEEEECChhhCcHHHHh--hc-eeeeC
Confidence 32 3456899999998743 34577888887743 467777889999999999998 77 45899
Q ss_pred cCCChHHHHHHHHHHhcCCCCCCchhhhHHhhhcCCCc
Q 004267 374 GVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYV 411 (764)
Q Consensus 374 ~~p~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~ 411 (764)
+.|+.++-.+.|..... ...+.....++..++|-.
T Consensus 163 ~~~~~~~~~~~L~~~~~---~~~~~~~~~~l~la~Gsp 197 (328)
T PRK05707 163 PLPSNEESLQWLQQALP---ESDERERIELLTLAGGSP 197 (328)
T ss_pred CCcCHHHHHHHHHHhcc---cCChHHHHHHHHHcCCCH
Confidence 99998887777764431 112223444555555543
No 370
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.54 E-value=5.3e-07 Score=97.22 Aligned_cols=148 Identities=20% Similarity=0.254 Sum_probs=98.6
Q ss_pred CCCcceeeeCCCCCChhHHHHHHHHHhCC------------------------eeEEEecccchhcccCcchHHHHHHHH
Q 004267 513 SPSKGVLFYGPPGCGKTLLAKAIANECQA------------------------NFISVKGPELLTMWFGESEANVREIFD 568 (764)
Q Consensus 513 ~~~~gill~GppGtGKT~lak~lA~~~~~------------------------~~i~v~~~~l~~~~~g~se~~i~~~f~ 568 (764)
+.+..+||+||+|+||+++|.++|..+-+ .+..+.+.. -... -+-..||++-+
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~~~--I~idqiR~l~~ 98 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEK-GKSS--LGVDAVREVTE 98 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEeccc-cccc--CCHHHHHHHHH
Confidence 44556999999999999999999986421 122222110 0000 12334555554
Q ss_pred H----HhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCCCCCccCCCCCccc
Q 004267 569 K----ARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLD 644 (764)
Q Consensus 569 ~----a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~ 644 (764)
. +......|++||++|.+- ...-|.||+.|+. +..++++|.+|+.++.|-|.+++ |+.
T Consensus 99 ~~~~~~~~g~~kV~iI~~ae~m~--------------~~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTIrS--RCq 160 (334)
T PRK07993 99 KLYEHARLGGAKVVWLPDAALLT--------------DAAANALLKTLEE--PPENTWFFLACREPARLLATLRS--RCR 160 (334)
T ss_pred HHhhccccCCceEEEEcchHhhC--------------HHHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHh--ccc
Confidence 4 444556799999999973 3456889999986 55678888888889999999987 887
Q ss_pred eEEeecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCC
Q 004267 645 QLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGF 686 (764)
Q Consensus 645 ~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~ 686 (764)
.+.|++|+.++..+.+... .+++. .+...++..+.|-
T Consensus 161 -~~~~~~~~~~~~~~~L~~~---~~~~~-~~a~~~~~la~G~ 197 (334)
T PRK07993 161 -LHYLAPPPEQYALTWLSRE---VTMSQ-DALLAALRLSAGA 197 (334)
T ss_pred -cccCCCCCHHHHHHHHHHc---cCCCH-HHHHHHHHHcCCC
Confidence 6899999988777766532 12322 2344555565553
No 371
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.54 E-value=2.6e-06 Score=88.51 Aligned_cols=200 Identities=20% Similarity=0.305 Sum_probs=113.0
Q ss_pred ccChHHH---HHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhC---------CeEEEEechh
Q 004267 210 VGGVRKQ---MAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG---------AFFFCINGPE 277 (764)
Q Consensus 210 i~Gl~~~---~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~---------~~~i~v~~~~ 277 (764)
..|+... ++++.+++..|-+ ....++||+|++|.|||++++......+ .+++.+..+.
T Consensus 36 WIgY~~A~~~L~~L~~Ll~~P~~----------~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~ 105 (302)
T PF05621_consen 36 WIGYPRAKEALDRLEELLEYPKR----------HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPP 105 (302)
T ss_pred eecCHHHHHHHHHHHHHHhCCcc----------cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCC
Confidence 4455544 4445555555422 2346799999999999999999987653 2445554321
Q ss_pred h------hh--------hc--cchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccC
Q 004267 278 I------MS--------KL--AGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKS 341 (764)
Q Consensus 278 l------~~--------~~--~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~ 341 (764)
- .. .+ .......-..+..-.+...+.+|+|||++.++.... ..+ ..+++.+..+..
T Consensus 106 ~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~-----~~q---r~~Ln~LK~L~N 177 (302)
T PF05621_consen 106 EPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSY-----RKQ---REFLNALKFLGN 177 (302)
T ss_pred CCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccH-----HHH---HHHHHHHHHHhh
Confidence 1 10 00 011222334445566667888999999999764321 112 233444444433
Q ss_pred CC--eEEEEEecCCCC--CCChhhhccCCcceEEEec--CCChHHHHHHHHHHhcCCCCCCch-----h-hhHHhhhcCC
Q 004267 342 RA--HVIVIGATNRPN--SIDPALRRFGRFDREIDIG--VPDEVGRLEVLRIHTKNMKLSDDV-----D-LERIAKDTHG 409 (764)
Q Consensus 342 ~~--~v~vI~atn~~~--~ld~al~r~~rf~~~i~i~--~p~~~~R~~il~~~~~~~~l~~~~-----~-l~~la~~t~g 409 (764)
.- .++.+|+..-.. .-|+.+.+ ||.. +.+| .++.+- ..++..+.+.+++.... . ...+-..+.|
T Consensus 178 eL~ipiV~vGt~~A~~al~~D~QLa~--RF~~-~~Lp~W~~d~ef-~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G 253 (302)
T PF05621_consen 178 ELQIPIVGVGTREAYRALRTDPQLAS--RFEP-FELPRWELDEEF-RRLLASFERALPLRKPSNLASPELARRIHERSEG 253 (302)
T ss_pred ccCCCeEEeccHHHHHHhccCHHHHh--ccCC-ccCCCCCCCcHH-HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCC
Confidence 33 445555433222 23677776 7853 3333 344433 44666666666654322 2 2455667777
Q ss_pred CchHHHHHHHHHHHHHHHHhhcc
Q 004267 410 YVGADLAALCTEAALQCIREKMD 432 (764)
Q Consensus 410 ~~~~dl~~l~~~a~~~~~~~~~~ 432 (764)
..| ++..++..|+..+++....
T Consensus 254 ~iG-~l~~ll~~aA~~AI~sG~E 275 (302)
T PF05621_consen 254 LIG-ELSRLLNAAAIAAIRSGEE 275 (302)
T ss_pred chH-HHHHHHHHHHHHHHhcCCc
Confidence 765 5777888888888876643
No 372
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.54 E-value=2.5e-07 Score=107.08 Aligned_cols=197 Identities=22% Similarity=0.282 Sum_probs=114.7
Q ss_pred ccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHh---CCeeEEEecccchhc
Q 004267 478 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTM 554 (764)
Q Consensus 478 v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~---~~~~i~v~~~~l~~~ 554 (764)
..++++.|.....+.+.+.+.... .....+||+|++|||||++|+++...+ +.+|+.++|..+...
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a-----------~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~ 261 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVA-----------RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSET 261 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHh-----------CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHH
Confidence 456777787766665554433211 223459999999999999999999875 569999999776321
Q ss_pred c-----cCcchHH-------HHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCC-----C
Q 004267 555 W-----FGESEAN-------VREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-----A 617 (764)
Q Consensus 555 ~-----~g~se~~-------i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~-----~ 617 (764)
+ +|..... -...|..| ....||||||+.+.. .+...|+..++... .
T Consensus 262 ~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~GtL~ldei~~L~~--------------~~Q~~Ll~~l~~~~~~~~~~ 324 (534)
T TIGR01817 262 LLESELFGHEKGAFTGAIAQRKGRFELA---DGGTLFLDEIGEISP--------------AFQAKLLRVLQEGEFERVGG 324 (534)
T ss_pred HHHHHHcCCCCCccCCCCcCCCCccccc---CCCeEEEechhhCCH--------------HHHHHHHHHHhcCcEEECCC
Confidence 1 1211000 00112223 235899999999743 23455555554321 1
Q ss_pred ----CCcEEEEecCCCCC-------CCCccCCCCCccc-eEEeecCCC--HHHHHHHHHHHhccC----CCCCcc---cH
Q 004267 618 ----KKTVFIIGATNRPD-------IIDPALLRPGRLD-QLIYIPLPD--EDSRHQIFKACLRKS----PVSKDV---DL 676 (764)
Q Consensus 618 ----~~~v~vi~aTn~~~-------~ld~allrpgRf~-~~i~~~~p~--~~~r~~Il~~~~~~~----~~~~~~---~l 676 (764)
..++-+|+|||..- .+.+.|.. |+. ..|.+|+.. .++...|++.++++. +....+ -+
T Consensus 325 ~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~ 402 (534)
T TIGR01817 325 NRTLKVDVRLVAATNRDLEEAVAKGEFRADLYY--RINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAI 402 (534)
T ss_pred CceEeecEEEEEeCCCCHHHHHHcCCCCHHHHH--HhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 12467888887531 22222222 443 467777664 355666666666432 111122 24
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q 004267 677 RALAKYTQGFSGADITEICQRACKYAIR 704 (764)
Q Consensus 677 ~~la~~~~g~sg~di~~~~~~a~~~a~~ 704 (764)
..|..+.-.-+-++|+++++.|+..+-.
T Consensus 403 ~~L~~~~WPGNvrEL~~v~~~a~~~~~~ 430 (534)
T TIGR01817 403 RVLMSCKWPGNVRELENCLERTATLSRS 430 (534)
T ss_pred HHHHhCCCCChHHHHHHHHHHHHHhCCC
Confidence 4555554345779999999999876543
No 373
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.53 E-value=1.8e-07 Score=106.39 Aligned_cols=196 Identities=21% Similarity=0.297 Sum_probs=111.3
Q ss_pred cccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHH-----------hCCeeEEEe
Q 004267 479 SWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANE-----------CQANFISVK 547 (764)
Q Consensus 479 ~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~-----------~~~~~i~v~ 547 (764)
.++++.|.....+.+.+.+.. + . .....+||+|++||||+++|+++-.. .+.+|+.++
T Consensus 217 ~f~~iiG~S~~m~~~~~~i~~-------~---A-~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~in 285 (538)
T PRK15424 217 VLGDLLGQSPQMEQVRQTILL-------Y---A-RSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVN 285 (538)
T ss_pred chhheeeCCHHHHHHHHHHHH-------H---h-CCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEee
Confidence 467788877766665554321 1 1 12345999999999999999999876 457999999
Q ss_pred cccchh-----cccCcchH--------HHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcC
Q 004267 548 GPELLT-----MWFGESEA--------NVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDG 614 (764)
Q Consensus 548 ~~~l~~-----~~~g~se~--------~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~ 614 (764)
|..+-. ..+|..+. .-..+|+.|.. ..||||||+.+.. .+...||..|+.
T Consensus 286 Caal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~g---GTLfLdeI~~Lp~--------------~~Q~kLl~~L~e 348 (538)
T PRK15424 286 CGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHG---GTLFLDEIGEMPL--------------PLQTRLLRVLEE 348 (538)
T ss_pred cccCChhhHHHHhcCCccccccCccccccCCchhccCC---CEEEEcChHhCCH--------------HHHHHHHhhhhc
Confidence 986532 11222111 11135555543 3899999999743 234445555543
Q ss_pred CC-----C----CCcEEEEecCCCCC--CCCccCCCCC---ccc-eEEeecCCCH--HHHHHHHHHHhcc----CCCCCc
Q 004267 615 MS-----A----KKTVFIIGATNRPD--IIDPALLRPG---RLD-QLIYIPLPDE--DSRHQIFKACLRK----SPVSKD 673 (764)
Q Consensus 615 ~~-----~----~~~v~vi~aTn~~~--~ld~allrpg---Rf~-~~i~~~~p~~--~~r~~Il~~~~~~----~~~~~~ 673 (764)
.. . .-++-||+|||..- .+....+|+. |+. ..|++|+.-+ ++...+++.++++ ....-+
T Consensus 349 ~~~~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~ 428 (538)
T PRK15424 349 KEVTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAPFS 428 (538)
T ss_pred CeEEecCCCceeccceEEEEecCCCHHHHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCC
Confidence 11 1 12457888887641 2222112110 222 3455665532 4556666777654 222211
Q ss_pred ccH--------HHHHHHCCCCCHHHHHHHHHHHHHHH
Q 004267 674 VDL--------RALAKYTQGFSGADITEICQRACKYA 702 (764)
Q Consensus 674 ~~l--------~~la~~~~g~sg~di~~~~~~a~~~a 702 (764)
.+. ..|..+.--.+-++|++++.+++..+
T Consensus 429 ~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~~ 465 (538)
T PRK15424 429 AALRQGLQQCETLLLHYDWPGNVRELRNLMERLALFL 465 (538)
T ss_pred HHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHhc
Confidence 111 23333333346789999999988753
No 374
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.52 E-value=1.7e-07 Score=91.77 Aligned_cols=94 Identities=24% Similarity=0.382 Sum_probs=60.6
Q ss_pred ccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHh-C----CeeEEEecccch
Q 004267 478 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC-Q----ANFISVKGPELL 552 (764)
Q Consensus 478 v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~-~----~~~i~v~~~~l~ 552 (764)
..+.||+|.++..+.|.-.. +-|- ..+++|.|||||||||-+.++|+++ | -..+.++.++=.
T Consensus 24 ~~l~dIVGNe~tv~rl~via-----------~~gn--mP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeR 90 (333)
T KOG0991|consen 24 SVLQDIVGNEDTVERLSVIA-----------KEGN--MPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDER 90 (333)
T ss_pred hHHHHhhCCHHHHHHHHHHH-----------HcCC--CCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCcccc
Confidence 34678999988877665322 1121 2359999999999999999999975 3 346677776532
Q ss_pred hcccCcchHHHHHHHHHHhh-CCC---eEEEEecccchh
Q 004267 553 TMWFGESEANVREIFDKARQ-SAP---CVLFFDELDSIA 587 (764)
Q Consensus 553 ~~~~g~se~~i~~~f~~a~~-~~p---~iifiDEid~l~ 587 (764)
+- +.-++--+.|..-+- .+| .|+++||+|++-
T Consensus 91 GI---DvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT 126 (333)
T KOG0991|consen 91 GI---DVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMT 126 (333)
T ss_pred cc---HHHHHHHHHHHHhhccCCCCceeEEEeeccchhh
Confidence 10 112333345544332 222 599999999974
No 375
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.52 E-value=1.6e-07 Score=93.53 Aligned_cols=118 Identities=24% Similarity=0.337 Sum_probs=73.1
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCe--EEEEechhhhhh--------------------------------
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGPEIMSK-------------------------------- 281 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~--~i~v~~~~l~~~-------------------------------- 281 (764)
+|.++.+..+.|.||+||||||++|.|...+... -+.+++.++.+.
T Consensus 21 ~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP 100 (309)
T COG1125 21 NLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVP 100 (309)
T ss_pred eEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhh
Confidence 4567888999999999999999999998765322 234444333110
Q ss_pred -ccchhH----HHHHH----------------------------HHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHH
Q 004267 282 -LAGESE----SNLRK----------------------------AFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRI 328 (764)
Q Consensus 282 -~~g~~~----~~l~~----------------------------vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v 328 (764)
..|-.. +++.+ =...|....|.|+++|| +.+.++.-.
T Consensus 101 ~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDE----------PFgALDpI~ 170 (309)
T COG1125 101 KLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDE----------PFGALDPIT 170 (309)
T ss_pred hhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecC----------CccccChhh
Confidence 000000 11111 12255566788999999 445555555
Q ss_pred HHHHHHHhhcccCCCeEEEEEecCCCCCCChhhhccCC
Q 004267 329 VSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGR 366 (764)
Q Consensus 329 ~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~r 366 (764)
..+|...+..++..-+-.+|..||+ +|+|++-..|
T Consensus 171 R~~lQ~e~~~lq~~l~kTivfVTHD---idEA~kLadr 205 (309)
T COG1125 171 RKQLQEEIKELQKELGKTIVFVTHD---IDEALKLADR 205 (309)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEecC---HHHHHhhhce
Confidence 5667777766666555566677776 7788765333
No 376
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.52 E-value=3.6e-06 Score=88.55 Aligned_cols=173 Identities=17% Similarity=0.309 Sum_probs=97.1
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCC-eEE--E-Eec----hhhh----hhc----cchh-HH---HHHHHH-HHHHhcC
Q 004267 243 KGILLYGPPGSGKTLIARAVANETGA-FFF--C-ING----PEIM----SKL----AGES-ES---NLRKAF-EEAEKNA 301 (764)
Q Consensus 243 ~~vLL~GppGtGKTtLar~la~~l~~-~~i--~-v~~----~~l~----~~~----~g~~-~~---~l~~vf-~~a~~~~ 301 (764)
..++|+||+|+||||+++.+++.+.. .+. . ++. .++. ..+ .+.. .. .+...+ .......
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~ 123 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGK 123 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 35899999999999999999998762 221 1 111 1111 111 0111 11 122222 2233566
Q ss_pred CeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhccc-CCCeEEEEEecCCCC---CC-C---hhhhccCCcceEEEe
Q 004267 302 PSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK-SRAHVIVIGATNRPN---SI-D---PALRRFGRFDREIDI 373 (764)
Q Consensus 302 p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-~~~~v~vI~atn~~~---~l-d---~al~r~~rf~~~i~i 373 (764)
+.+++|||++.+.+. ....+..+.+... ....+.|+.+ ..++ .+ + ..+.+ |+...+++
T Consensus 124 ~~vliiDe~~~l~~~-----------~~~~l~~l~~~~~~~~~~~~vvl~-g~~~~~~~l~~~~~~~l~~--r~~~~~~l 189 (269)
T TIGR03015 124 RALLVVDEAQNLTPE-----------LLEELRMLSNFQTDNAKLLQIFLV-GQPEFRETLQSPQLQQLRQ--RIIASCHL 189 (269)
T ss_pred CeEEEEECcccCCHH-----------HHHHHHHHhCcccCCCCeEEEEEc-CCHHHHHHHcCchhHHHHh--heeeeeeC
Confidence 789999999876321 1222222222111 1222222222 2222 11 1 12333 67778899
Q ss_pred cCCChHHHHHHHHHHhcCCC-----CCCchhhhHHhhhcCCCchHHHHHHHHHHHHHHHHhh
Q 004267 374 GVPDEVGRLEVLRIHTKNMK-----LSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREK 430 (764)
Q Consensus 374 ~~p~~~~R~~il~~~~~~~~-----l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~ 430 (764)
+..+.++-.+++...+.... ...+..++.+.+.+.|+... +..+|..+...+....
T Consensus 190 ~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~-i~~l~~~~~~~a~~~~ 250 (269)
T TIGR03015 190 GPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRL-INILCDRLLLSAFLEE 250 (269)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccH-HHHHHHHHHHHHHHcC
Confidence 99999988888876654332 12345688889999998655 8888888877665543
No 377
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.52 E-value=2.4e-07 Score=94.26 Aligned_cols=58 Identities=17% Similarity=0.252 Sum_probs=46.1
Q ss_pred HHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCCh
Q 004267 291 RKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDP 359 (764)
Q Consensus 291 ~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld~ 359 (764)
|-+++.|..+.|.++++|| +...+|......+++++..++.. +..|+..|++.+.+..
T Consensus 147 RV~lARAL~~~p~lllLDE----------P~~gvD~~~~~~i~~lL~~l~~e-g~tIl~vtHDL~~v~~ 204 (254)
T COG1121 147 RVLLARALAQNPDLLLLDE----------PFTGVDVAGQKEIYDLLKELRQE-GKTVLMVTHDLGLVMA 204 (254)
T ss_pred HHHHHHHhccCCCEEEecC----------CcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCcHHhHh
Confidence 5567788899999999999 55566667778888999988887 7777888998765544
No 378
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.51 E-value=1.6e-07 Score=111.04 Aligned_cols=170 Identities=21% Similarity=0.270 Sum_probs=96.9
Q ss_pred cceeeeCCCCCChhHHHHHHHHHh---CCeeEEEecccch-----hcccCcc----hHHHHHHHHHHhhCCCeEEEEecc
Q 004267 516 KGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELL-----TMWFGES----EANVREIFDKARQSAPCVLFFDEL 583 (764)
Q Consensus 516 ~gill~GppGtGKT~lak~lA~~~---~~~~i~v~~~~l~-----~~~~g~s----e~~i~~~f~~a~~~~p~iifiDEi 583 (764)
..+||+|++||||+++|+++...+ +.+|+.++|..+- +.++|.. .......|+.|. ...||||||
T Consensus 349 ~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~~~~elfg~~~~~~~~~~~g~~~~a~---~GtL~ldei 425 (638)
T PRK11388 349 FPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAEEFLGSDRTDSENGRLSKFELAH---GGTLFLEKV 425 (638)
T ss_pred CCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChHHHHHHhcCCCCcCccCCCCCceeECC---CCEEEEcCh
Confidence 449999999999999999998865 4699999987652 2223321 100111233332 358999999
Q ss_pred cchhhccCCCCCCCCcchHHHHHHHHHhhcCCC-----C----CCcEEEEecCCCCC--CCCccCCCCC---cc-ceEEe
Q 004267 584 DSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-----A----KKTVFIIGATNRPD--IIDPALLRPG---RL-DQLIY 648 (764)
Q Consensus 584 d~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~-----~----~~~v~vi~aTn~~~--~ld~allrpg---Rf-~~~i~ 648 (764)
+.+.. .+...|+..++.-. . .-++-||+|||..- .+....+|+. |+ ...|.
T Consensus 426 ~~l~~--------------~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~~l~~~~~~~~f~~dL~~~l~~~~i~ 491 (638)
T PRK11388 426 EYLSP--------------ELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLAMLVEQNRFSRQLYYALHAFEIT 491 (638)
T ss_pred hhCCH--------------HHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccCCHHHHHhcCCChHHHhhhhceeEEe
Confidence 99743 23344555544321 1 11567888888642 1222111110 22 34556
Q ss_pred ecCCCH--HHHHHHHHHHhccC------CCC-CcccHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q 004267 649 IPLPDE--DSRHQIFKACLRKS------PVS-KDVDLRALAKYTQGFSGADITEICQRACKYA 702 (764)
Q Consensus 649 ~~~p~~--~~r~~Il~~~~~~~------~~~-~~~~l~~la~~~~g~sg~di~~~~~~a~~~a 702 (764)
+|+.-. ++...+++.++++. ++. .+.-+..|..+.-.-+-++|+++++.|+..+
T Consensus 492 lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvreL~~~l~~~~~~~ 554 (638)
T PRK11388 492 IPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSYRWPGNDFELRSVIENLALSS 554 (638)
T ss_pred CCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHcCCCCChHHHHHHHHHHHHHhC
Confidence 665532 34555566665432 111 1222445555543457799999999988754
No 379
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.51 E-value=4.6e-07 Score=106.35 Aligned_cols=154 Identities=22% Similarity=0.346 Sum_probs=95.0
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhC------------------
Q 004267 206 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG------------------ 267 (764)
Q Consensus 206 ~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~------------------ 267 (764)
.|.+|.|.+..+..+.-+...| ...+|||.|++|||||+++++|+..+.
T Consensus 2 pf~~ivGq~~~~~al~~~av~~-------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~ 68 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDP-------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPE 68 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCC-------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcc
Confidence 5778999998876664333221 124699999999999999999999883
Q ss_pred -----------------CeEEEEechhhhhhccchhHHHHHHHHHH---------HHhcCCeEEEEccccccCCCCCCCc
Q 004267 268 -----------------AFFFCINGPEIMSKLAGESESNLRKAFEE---------AEKNAPSIIFIDEIDSIAPKREKTH 321 (764)
Q Consensus 268 -----------------~~~i~v~~~~l~~~~~g~~~~~l~~vf~~---------a~~~~p~il~iDEid~l~~~~~~~~ 321 (764)
.+|+.+..........|.. .+...++. .......+|||||++.+.+
T Consensus 69 ~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~--d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~------ 140 (633)
T TIGR02442 69 EWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSL--DIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDD------ 140 (633)
T ss_pred ccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcc--cHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCH------
Confidence 2344443322222222211 01111110 0011235999999998743
Q ss_pred hHHHHHHHHHHHHHhhcc-----------cCCCeEEEEEecCCC-CCCChhhhccCCcceEEEecCCC-hHHHHHHHHH
Q 004267 322 GEVERRIVSQLLTLMDGL-----------KSRAHVIVIGATNRP-NSIDPALRRFGRFDREIDIGVPD-EVGRLEVLRI 387 (764)
Q Consensus 322 ~~~~~~v~~~Ll~~ld~~-----------~~~~~v~vI~atn~~-~~ld~al~r~~rf~~~i~i~~p~-~~~R~~il~~ 387 (764)
.+...|+..|+.- ....++.+|+++|.. ..+.++|.. ||+..+.++.+. .+++.++++.
T Consensus 141 -----~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~ 212 (633)
T TIGR02442 141 -----HLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRR 212 (633)
T ss_pred -----HHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHHH
Confidence 3456677777532 112468899988854 357778877 898888888765 4667777653
No 380
>PRK04132 replication factor C small subunit; Provisional
Probab=98.50 E-value=2e-06 Score=101.96 Aligned_cols=152 Identities=21% Similarity=0.200 Sum_probs=108.8
Q ss_pred CceEEEEC--CCCCCHHHHHHHHHHHh-----CCeEEEEechhhhhhccchhHHHHHHHHHHHHhcC------CeEEEEc
Q 004267 242 PKGILLYG--PPGSGKTLIARAVANET-----GAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNA------PSIIFID 308 (764)
Q Consensus 242 ~~~vLL~G--ppGtGKTtLar~la~~l-----~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~------p~il~iD 308 (764)
+-+-+..| |++.||||+|++||+++ +..++.+|+++..+ -..++.+...+.... ..|+|||
T Consensus 564 ~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvIID 637 (846)
T PRK04132 564 GYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFLD 637 (846)
T ss_pred chhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEEEE
Confidence 33456678 99999999999999997 45789999987422 235666665544322 3699999
Q ss_pred cccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCChhhhccCCcceEEEecCCChHHHHHHHHHH
Q 004267 309 EIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIH 388 (764)
Q Consensus 309 Eid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~ 388 (764)
|+|.+.. ...+.|+..|+.... .+.+|.+||++..+.+.+++ |+ ..+.+..|+.++-...|+..
T Consensus 638 EaD~Lt~-----------~AQnALLk~lEep~~--~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~L~~I 701 (846)
T PRK04132 638 EADALTQ-----------DAQQALRRTMEMFSS--NVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRLRYI 701 (846)
T ss_pred CcccCCH-----------HHHHHHHHHhhCCCC--CeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHHHHHH
Confidence 9998842 234667888876543 67788889999999999987 66 67899999988777777765
Q ss_pred hcCCCCC-CchhhhHHhhhcCCCchHHH
Q 004267 389 TKNMKLS-DDVDLERIAKDTHGYVGADL 415 (764)
Q Consensus 389 ~~~~~l~-~~~~l~~la~~t~g~~~~dl 415 (764)
+....+. ++..+..++..+.|-...-+
T Consensus 702 ~~~Egi~i~~e~L~~Ia~~s~GDlR~AI 729 (846)
T PRK04132 702 AENEGLELTEEGLQAILYIAEGDMRRAI 729 (846)
T ss_pred HHhcCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 5433322 34467888888887554444
No 381
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.49 E-value=2.2e-06 Score=91.78 Aligned_cols=179 Identities=16% Similarity=0.204 Sum_probs=115.2
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCe----------EEEEec
Q 004267 206 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------FFCING 275 (764)
Q Consensus 206 ~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~----------~i~v~~ 275 (764)
.|++|.|.+..++.++..+... .-+..+||+||+|+||+++|+++|..+-.. +...+.
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~------------rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~h 69 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQN------------RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNH 69 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCC
Confidence 4788999999999999888652 124589999999999999999999886321 011111
Q ss_pred hhhh---------hh--------ccc--------hhHHHHHHHHHHHH----hcCCeEEEEccccccCCCCCCCchHHHH
Q 004267 276 PEIM---------SK--------LAG--------ESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVER 326 (764)
Q Consensus 276 ~~l~---------~~--------~~g--------~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~ 326 (764)
+|+. ++ ..| -.-..++.+.+.+. .....|++||++|.+..
T Consensus 70 PDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~----------- 138 (314)
T PRK07399 70 PDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNE----------- 138 (314)
T ss_pred CCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCH-----------
Confidence 2211 00 000 01124555554443 23457999999987742
Q ss_pred HHHHHHHHHhhcccCCCeEEEEEecCCCCCCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCCCchhhhHHhhh
Q 004267 327 RIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKD 406 (764)
Q Consensus 327 ~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~~~~l~~la~~ 406 (764)
...+.|+..|+... + .++|..|+.++.+-|.+++ |. ..+.++.|+.++-.++|......- ..+.+...++..
T Consensus 139 ~aaNaLLK~LEEPp-~--~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~~~~--~~~~~~~~l~~~ 210 (314)
T PRK07399 139 AAANALLKTLEEPG-N--GTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLGDEE--ILNINFPELLAL 210 (314)
T ss_pred HHHHHHHHHHhCCC-C--CeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhhccc--cchhHHHHHHHH
Confidence 23467888887754 3 3455667788999999998 66 668999999988888887543211 111224566666
Q ss_pred cCCCchHHH
Q 004267 407 THGYVGADL 415 (764)
Q Consensus 407 t~g~~~~dl 415 (764)
..|-.+.-+
T Consensus 211 a~Gs~~~al 219 (314)
T PRK07399 211 AQGSPGAAI 219 (314)
T ss_pred cCCCHHHHH
Confidence 666554443
No 382
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.48 E-value=1e-06 Score=93.89 Aligned_cols=155 Identities=23% Similarity=0.278 Sum_probs=100.3
Q ss_pred CCCcceeeeCCCCCChhHHHHHHHHHhCCee-------------EEEecccchhc-----ccC------cchHHHHHHHH
Q 004267 513 SPSKGVLFYGPPGCGKTLLAKAIANECQANF-------------ISVKGPELLTM-----WFG------ESEANVREIFD 568 (764)
Q Consensus 513 ~~~~gill~GppGtGKT~lak~lA~~~~~~~-------------i~v~~~~l~~~-----~~g------~se~~i~~~f~ 568 (764)
+.+..+||+||+|+||+++|.++|..+-..- ..-+-+|+.-- ..| -.-..||++.+
T Consensus 24 rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~ 103 (319)
T PRK08769 24 RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQ 103 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHH
Confidence 3455699999999999999999998542110 00011222100 001 12346777766
Q ss_pred HHhhC----CCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCCCCCccCCCCCccc
Q 004267 569 KARQS----APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLD 644 (764)
Q Consensus 569 ~a~~~----~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~ 644 (764)
.+... ...|++||++|.+. ...-|.||+.|+. +..++++|.+|+.++.|-|.+++ |+.
T Consensus 104 ~~~~~p~~g~~kV~iI~~ae~m~--------------~~AaNaLLKtLEE--Pp~~~~fiL~~~~~~~lLpTIrS--RCq 165 (319)
T PRK08769 104 KLALTPQYGIAQVVIVDPADAIN--------------RAACNALLKTLEE--PSPGRYLWLISAQPARLPATIRS--RCQ 165 (319)
T ss_pred HHhhCcccCCcEEEEeccHhhhC--------------HHHHHHHHHHhhC--CCCCCeEEEEECChhhCchHHHh--hhe
Confidence 55433 34799999999973 3456889998886 44567777788889999999987 886
Q ss_pred eEEeecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHH
Q 004267 645 QLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADI 691 (764)
Q Consensus 645 ~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~sg~di 691 (764)
.+.|++|+.++..+.+... ++. ..+...++..+.|--+.-+
T Consensus 166 -~i~~~~~~~~~~~~~L~~~----~~~-~~~a~~~~~l~~G~p~~A~ 206 (319)
T PRK08769 166 -RLEFKLPPAHEALAWLLAQ----GVS-ERAAQEALDAARGHPGLAA 206 (319)
T ss_pred -EeeCCCcCHHHHHHHHHHc----CCC-hHHHHHHHHHcCCCHHHHH
Confidence 8889999998777777542 222 2234456666666444433
No 383
>PRK08116 hypothetical protein; Validated
Probab=98.48 E-value=8.4e-07 Score=92.93 Aligned_cols=100 Identities=20% Similarity=0.384 Sum_probs=62.1
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHh---CCeEEEEechhhhhhccch----hHHHHHHHHHHHHhcCCeEEEEccccccC
Q 004267 242 PKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGE----SESNLRKAFEEAEKNAPSIIFIDEIDSIA 314 (764)
Q Consensus 242 ~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~~~g~----~~~~l~~vf~~a~~~~p~il~iDEid~l~ 314 (764)
+.+++|+|++|||||+|+.++++.+ +.+++.++.++++...... .......+++... ...+|+|||+...-
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e~ 191 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAER 191 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccCCC
Confidence 4579999999999999999999986 6678888888776543211 1111223333332 34699999985421
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCC
Q 004267 315 PKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNR 353 (764)
Q Consensus 315 ~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~ 353 (764)
. . .....+|.++++........ +|.|||.
T Consensus 192 ~------t---~~~~~~l~~iin~r~~~~~~-~IiTsN~ 220 (268)
T PRK08116 192 D------T---EWAREKVYNIIDSRYRKGLP-TIVTTNL 220 (268)
T ss_pred C------C---HHHHHHHHHHHHHHHHCCCC-EEEECCC
Confidence 1 1 22345677777764433333 4445664
No 384
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.48 E-value=3.6e-07 Score=98.86 Aligned_cols=198 Identities=24% Similarity=0.306 Sum_probs=120.8
Q ss_pred cccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHH----hCCeeEEEecccchhc
Q 004267 479 SWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANE----CQANFISVKGPELLTM 554 (764)
Q Consensus 479 ~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~----~~~~~i~v~~~~l~~~ 554 (764)
.+.+++|...-.+.+.+.+.. + . +....+|++|++||||+.+|++|... .+.|||.+||..+...
T Consensus 76 ~~~~LIG~~~~~~~~~eqik~---~----a----p~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en 144 (403)
T COG1221 76 ALDDLIGESPSLQELREQIKA---Y----A----PSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSEN 144 (403)
T ss_pred hhhhhhccCHHHHHHHHHHHh---h----C----CCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcC
Confidence 455666665554444433321 0 0 12345999999999999999999764 3679999999876432
Q ss_pred -------------ccCcchHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCC-----
Q 004267 555 -------------WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS----- 616 (764)
Q Consensus 555 -------------~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~----- 616 (764)
|.| ....-.-+|+.|... .+|+|||..+.. .....||+.||..+
T Consensus 145 ~~~~eLFG~~kGaftG-a~~~k~Glfe~A~GG---tLfLDEI~~LP~--------------~~Q~kLl~~le~g~~~rvG 206 (403)
T COG1221 145 LQEAELFGHEKGAFTG-AQGGKAGLFEQANGG---TLFLDEIHRLPP--------------EGQEKLLRVLEEGEYRRVG 206 (403)
T ss_pred HHHHHHhccccceeec-ccCCcCchheecCCC---EEehhhhhhCCH--------------hHHHHHHHHHHcCceEecC
Confidence 233 233344577777665 999999998754 23455666666531
Q ss_pred ----CCCcEEEEecCCC--CCCCCc--cCCCCCccceEEeecCCCH--HHHHHHHHHHh----ccCCCCCccc----HHH
Q 004267 617 ----AKKTVFIIGATNR--PDIIDP--ALLRPGRLDQLIYIPLPDE--DSRHQIFKACL----RKSPVSKDVD----LRA 678 (764)
Q Consensus 617 ----~~~~v~vi~aTn~--~~~ld~--allrpgRf~~~i~~~~p~~--~~r~~Il~~~~----~~~~~~~~~~----l~~ 678 (764)
...+|-+|+|||- ++.+-. .+.+. |+...|.+|+.-+ +++..+.+.++ ++.......+ +..
T Consensus 207 ~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~r-l~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~ 285 (403)
T COG1221 207 GSQPRPVDVRLICATTEDLEEAVLAGADLTRR-LNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRA 285 (403)
T ss_pred CCCCcCCCceeeeccccCHHHHHHhhcchhhh-hcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHH
Confidence 2347888999873 222323 34331 6667777777654 44555555555 3333332223 233
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHH
Q 004267 679 LAKYTQGFSGADITEICQRACKYAIREN 706 (764)
Q Consensus 679 la~~~~g~sg~di~~~~~~a~~~a~~~~ 706 (764)
|-.+.---+-++++++++.++..+-...
T Consensus 286 L~~y~~pGNirELkN~Ve~~~~~~~~~~ 313 (403)
T COG1221 286 LLAYDWPGNIRELKNLVERAVAQASGEG 313 (403)
T ss_pred HHhCCCCCcHHHHHHHHHHHHHHhcccc
Confidence 3333323367899999999998885443
No 385
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.47 E-value=2e-07 Score=90.28 Aligned_cols=111 Identities=17% Similarity=0.238 Sum_probs=71.6
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCe--EEEEechhhh--------hhccc-----hhHHHHHHHHHHHHhc
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGPEIM--------SKLAG-----ESESNLRKAFEEAEKN 300 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~--~i~v~~~~l~--------~~~~g-----~~~~~l~~vf~~a~~~ 300 (764)
++.+.+++.+.|.||+|+|||||++.|++..... -+.+++.++. ....+ ...++-+-.+..+...
T Consensus 20 ~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~ 99 (163)
T cd03216 20 SLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALAR 99 (163)
T ss_pred EEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhc
Confidence 3567889999999999999999999999986421 2344443221 11011 1233456667788888
Q ss_pred CCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCC
Q 004267 301 APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 357 (764)
Q Consensus 301 ~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~l 357 (764)
.|.++++||. ...++......+.+.+..+..+ ...+|.+|++++.+
T Consensus 100 ~p~illlDEP----------~~~LD~~~~~~l~~~l~~~~~~-~~tiii~sh~~~~~ 145 (163)
T cd03216 100 NARLLILDEP----------TAALTPAEVERLFKVIRRLRAQ-GVAVIFISHRLDEV 145 (163)
T ss_pred CCCEEEEECC----------CcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHH
Confidence 9999999994 3334444556666666665433 34555577776543
No 386
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=4.5e-07 Score=96.22 Aligned_cols=97 Identities=35% Similarity=0.547 Sum_probs=71.6
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhhh-hccch-hHHHHHHHHHHHH----hcCCeEEEEccccccCC
Q 004267 242 PKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS-KLAGE-SESNLRKAFEEAE----KNAPSIIFIDEIDSIAP 315 (764)
Q Consensus 242 ~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~-~~~g~-~~~~l~~vf~~a~----~~~p~il~iDEid~l~~ 315 (764)
..+|||.||+|+|||.|++.||..++.+|...+|..+.. .|+|+ .+.-+..+++.|. +.+-.|+||||+|.+..
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~ 305 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITK 305 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcc
Confidence 357999999999999999999999999999999988764 57775 4556677777653 34557999999999984
Q ss_pred CCCCC-c--hHHHHHHHHHHHHHhhc
Q 004267 316 KREKT-H--GEVERRIVSQLLTLMDG 338 (764)
Q Consensus 316 ~~~~~-~--~~~~~~v~~~Ll~~ld~ 338 (764)
....- . +--.+-+...|+.++++
T Consensus 306 ~~~~i~~~RDVsGEGVQQaLLKllEG 331 (564)
T KOG0745|consen 306 KAESIHTSRDVSGEGVQQALLKLLEG 331 (564)
T ss_pred cCccccccccccchhHHHHHHHHhcc
Confidence 43211 1 11123455678888875
No 387
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.45 E-value=2.2e-07 Score=90.62 Aligned_cols=109 Identities=20% Similarity=0.374 Sum_probs=72.0
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHhC--CeEEEEechhhh----------------------------------
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETG--AFFFCINGPEIM---------------------------------- 279 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~--~~~i~v~~~~l~---------------------------------- 279 (764)
++.+.+++.+.|+||+|||||||+|+|.+.-. .--+.++|..+.
T Consensus 22 ~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~la 101 (240)
T COG1126 22 SLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLA 101 (240)
T ss_pred ceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhh
Confidence 34567889999999999999999999976421 112344432110
Q ss_pred -----------------------------hhccch--hHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHH
Q 004267 280 -----------------------------SKLAGE--SESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRI 328 (764)
Q Consensus 280 -----------------------------~~~~g~--~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v 328 (764)
..|..+ ..++-|-.+..|....|.++++|| +.+..+...
T Consensus 102 p~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDE----------PTSALDPEl 171 (240)
T COG1126 102 PVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDE----------PTSALDPEL 171 (240)
T ss_pred hHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecC----------CcccCCHHH
Confidence 011111 122335566778888999999999 555666778
Q ss_pred HHHHHHHhhcccCCCeEEEEEecCCCC
Q 004267 329 VSQLLTLMDGLKSRAHVIVIGATNRPN 355 (764)
Q Consensus 329 ~~~Ll~~ld~~~~~~~v~vI~atn~~~ 355 (764)
+...+..|..+...+ ...|..||...
T Consensus 172 v~EVL~vm~~LA~eG-mTMivVTHEM~ 197 (240)
T COG1126 172 VGEVLDVMKDLAEEG-MTMIIVTHEMG 197 (240)
T ss_pred HHHHHHHHHHHHHcC-CeEEEEechhH
Confidence 888888888887655 45555677653
No 388
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.44 E-value=2e-06 Score=92.99 Aligned_cols=147 Identities=14% Similarity=0.198 Sum_probs=97.7
Q ss_pred cccccC-hHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCe----------------
Q 004267 207 YDDVGG-VRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------------- 269 (764)
Q Consensus 207 ~~~i~G-l~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~---------------- 269 (764)
|+.|.| .+..++.++..+... ..+..+||+||+|+|||++|+.+|+.+...
T Consensus 4 ~~~i~~~q~~~~~~L~~~~~~~------------~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~ 71 (329)
T PRK08058 4 WEQLTALQPVVVKMLQNSIAKN------------RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKR 71 (329)
T ss_pred HHHHHhhHHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHH
Confidence 555666 888888888777531 234568999999999999999999886321
Q ss_pred --------EEEEechhhhhhccchhHHHHHHHHHHHH----hcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhh
Q 004267 270 --------FFCINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMD 337 (764)
Q Consensus 270 --------~i~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld 337 (764)
+..+... +.. -.-..++.+.+.+. .....|++|||+|.+.. ...+.|+..++
T Consensus 72 ~~~~~hpD~~~i~~~---~~~--i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~-----------~a~NaLLK~LE 135 (329)
T PRK08058 72 IDSGNHPDVHLVAPD---GQS--IKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTA-----------SAANSLLKFLE 135 (329)
T ss_pred HhcCCCCCEEEeccc---ccc--CCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCH-----------HHHHHHHHHhc
Confidence 1111110 000 11234555554433 23346999999987632 23467888887
Q ss_pred cccCCCeEEEEEecCCCCCCChhhhccCCcceEEEecCCChHHHHHHHH
Q 004267 338 GLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLR 386 (764)
Q Consensus 338 ~~~~~~~v~vI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~ 386 (764)
.... .+++|.+|+.+..+-|.+++ |. ..+++..|+.++-.+.++
T Consensus 136 EPp~--~~~~Il~t~~~~~ll~TIrS--Rc-~~i~~~~~~~~~~~~~L~ 179 (329)
T PRK08058 136 EPSG--GTTAILLTENKHQILPTILS--RC-QVVEFRPLPPESLIQRLQ 179 (329)
T ss_pred CCCC--CceEEEEeCChHhCcHHHHh--hc-eeeeCCCCCHHHHHHHHH
Confidence 6443 55666678888899999988 66 568899998887766665
No 389
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.43 E-value=8.4e-07 Score=105.70 Aligned_cols=197 Identities=23% Similarity=0.306 Sum_probs=113.1
Q ss_pred cccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHh---CCeeEEEecccchh--
Q 004267 479 SWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLT-- 553 (764)
Q Consensus 479 ~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~---~~~~i~v~~~~l~~-- 553 (764)
.++++.|.....+.+.+.+.... .....+||+|++|||||++|+++...+ +.+|+.++|..+..
T Consensus 374 ~~~~liG~S~~~~~~~~~~~~~a-----------~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~ 442 (686)
T PRK15429 374 EFGEIIGRSEAMYSVLKQVEMVA-----------QSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGL 442 (686)
T ss_pred cccceeecCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhH
Confidence 45677777766665554433211 123459999999999999999998864 57999999876532
Q ss_pred ---cccCc--------chHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCC------
Q 004267 554 ---MWFGE--------SEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS------ 616 (764)
Q Consensus 554 ---~~~g~--------se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~------ 616 (764)
..+|. ..... ..|+.|. ...+|||||+.+.. .+...|+..|+...
T Consensus 443 ~~~~lfg~~~~~~~g~~~~~~-g~le~a~---~GtL~Ldei~~L~~--------------~~Q~~L~~~l~~~~~~~~g~ 504 (686)
T PRK15429 443 LESDLFGHERGAFTGASAQRI-GRFELAD---KSSLFLDEVGDMPL--------------ELQPKLLRVLQEQEFERLGS 504 (686)
T ss_pred hhhhhcCcccccccccccchh-hHHHhcC---CCeEEEechhhCCH--------------HHHHHHHHHHHhCCEEeCCC
Confidence 12232 11112 2344443 35999999999743 23444555443321
Q ss_pred ---CCCcEEEEecCCCCC--CCCccCCCCC---ccc-eEEeecCCCH--HHHHHHHHHHhccC----C--C--CCcccHH
Q 004267 617 ---AKKTVFIIGATNRPD--IIDPALLRPG---RLD-QLIYIPLPDE--DSRHQIFKACLRKS----P--V--SKDVDLR 677 (764)
Q Consensus 617 ---~~~~v~vi~aTn~~~--~ld~allrpg---Rf~-~~i~~~~p~~--~~r~~Il~~~~~~~----~--~--~~~~~l~ 677 (764)
...++-+|++||..- .+....+|+. |+. ..|.+|+... ++...+++.++++. + + -+..-+.
T Consensus 505 ~~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~ 584 (686)
T PRK15429 505 NKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLR 584 (686)
T ss_pred CCcccceEEEEEeCCCCHHHHHHcCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHH
Confidence 123577888887642 2222222211 332 2455655532 34444556555331 1 1 1222345
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHH
Q 004267 678 ALAKYTQGFSGADITEICQRACKYAIR 704 (764)
Q Consensus 678 ~la~~~~g~sg~di~~~~~~a~~~a~~ 704 (764)
.|..+.--.+-++|+++++.|+..+-.
T Consensus 585 ~L~~y~WPGNvrEL~~~i~~a~~~~~~ 611 (686)
T PRK15429 585 TLSNMEWPGNVRELENVIERAVLLTRG 611 (686)
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhCCC
Confidence 555555445779999999999876543
No 390
>PRK08181 transposase; Validated
Probab=98.42 E-value=5.2e-07 Score=94.02 Aligned_cols=100 Identities=24% Similarity=0.359 Sum_probs=63.7
Q ss_pred CcceeeeCCCCCChhHHHHHHHHHh---CCeeEEEecccchhcccC-cchHHHHHHHHHHhhCCCeEEEEecccchhhcc
Q 004267 515 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFG-ESEANVREIFDKARQSAPCVLFFDELDSIATQR 590 (764)
Q Consensus 515 ~~gill~GppGtGKT~lak~lA~~~---~~~~i~v~~~~l~~~~~g-~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r 590 (764)
..+++|+||||||||+||.+++.++ +...+.++.++++..+.. ........+++... .+.+|+|||++.+...
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~--~~dLLIIDDlg~~~~~- 182 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLD--KFDLLILDDLAYVTKD- 182 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHh--cCCEEEEeccccccCC-
Confidence 4579999999999999999999854 666777888887764321 11223444555443 3469999999875331
Q ss_pred CCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCC
Q 004267 591 GSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRP 630 (764)
Q Consensus 591 ~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~ 630 (764)
......+-++++..-+ .. -+|.|||.+
T Consensus 183 --------~~~~~~Lf~lin~R~~---~~--s~IiTSN~~ 209 (269)
T PRK08181 183 --------QAETSVLFELISARYE---RR--SILITANQP 209 (269)
T ss_pred --------HHHHHHHHHHHHHHHh---CC--CEEEEcCCC
Confidence 2233444445443322 11 377788864
No 391
>PRK09183 transposase/IS protein; Provisional
Probab=98.42 E-value=9.6e-07 Score=92.06 Aligned_cols=104 Identities=21% Similarity=0.384 Sum_probs=64.6
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHh---CCeEEEEechhhhhhccch-hHHHHHHHHHHHHhcCCeEEEEccccccC
Q 004267 239 VKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGE-SESNLRKAFEEAEKNAPSIIFIDEIDSIA 314 (764)
Q Consensus 239 i~~~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~~~g~-~~~~l~~vf~~a~~~~p~il~iDEid~l~ 314 (764)
+..+.+++|+||||||||+|+.+++... +..+..++..++...+... ....+..+++.. ...+.+++|||++...
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~~ 177 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYLP 177 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccCC
Confidence 3557899999999999999999997664 5566677777765433211 112344556554 3456899999998653
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCC
Q 004267 315 PKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRP 354 (764)
Q Consensus 315 ~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~ 354 (764)
... .....|+.+++....+.. +|.|||.+
T Consensus 178 ~~~---------~~~~~lf~li~~r~~~~s--~iiTsn~~ 206 (259)
T PRK09183 178 FSQ---------EEANLFFQVIAKRYEKGS--MILTSNLP 206 (259)
T ss_pred CCh---------HHHHHHHHHHHHHHhcCc--EEEecCCC
Confidence 321 112345555554333333 34467653
No 392
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.41 E-value=9e-07 Score=101.60 Aligned_cols=196 Identities=22% Similarity=0.273 Sum_probs=111.9
Q ss_pred ccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHh---CCeeEEEecccchh---
Q 004267 480 WEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLT--- 553 (764)
Q Consensus 480 ~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~---~~~~i~v~~~~l~~--- 553 (764)
..++.|.....+.+.+.+.. .. .....+||+|++||||+++|+++...+ +.+|+.++|..+-.
T Consensus 186 ~~~iig~s~~~~~~~~~i~~----------~a-~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~ 254 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEV----------VA-ASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLA 254 (509)
T ss_pred CCceeecCHHHHHHHHHHHH----------Hh-CCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHH
Confidence 34566666555554443332 11 223459999999999999999998875 57999999987632
Q ss_pred --cccCcchH-------HHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCC--------
Q 004267 554 --MWFGESEA-------NVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-------- 616 (764)
Q Consensus 554 --~~~g~se~-------~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~-------- 616 (764)
..+|.... .-...|+.|.. ..||||||+.+.. .+...|+..++...
T Consensus 255 e~~lfG~~~g~~~ga~~~~~g~~~~a~g---GtL~ldeI~~L~~--------------~~Q~~Ll~~l~~~~~~~~g~~~ 317 (509)
T PRK05022 255 ESELFGHVKGAFTGAISNRSGKFELADG---GTLFLDEIGELPL--------------ALQAKLLRVLQYGEIQRVGSDR 317 (509)
T ss_pred HHHhcCccccccCCCcccCCcchhhcCC---CEEEecChhhCCH--------------HHHHHHHHHHhcCCEeeCCCCc
Confidence 11221100 01113444433 4899999999743 23444555444221
Q ss_pred -CCCcEEEEecCCCCC-------CCCccCCCCCccc-eEEeecCCCH--HHHHHHHHHHhccC----C---CC-CcccHH
Q 004267 617 -AKKTVFIIGATNRPD-------IIDPALLRPGRLD-QLIYIPLPDE--DSRHQIFKACLRKS----P---VS-KDVDLR 677 (764)
Q Consensus 617 -~~~~v~vi~aTn~~~-------~ld~allrpgRf~-~~i~~~~p~~--~~r~~Il~~~~~~~----~---~~-~~~~l~ 677 (764)
...++-||++||+.- .+.+.|.. |+. ..|++|+... ++...+++.++++. + +. ...-+.
T Consensus 318 ~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~ 395 (509)
T PRK05022 318 SLRVDVRVIAATNRDLREEVRAGRFRADLYH--RLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQA 395 (509)
T ss_pred ceecceEEEEecCCCHHHHHHcCCccHHHHh--cccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHH
Confidence 112577888888642 23333332 443 3466666533 34455555555332 1 11 111244
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q 004267 678 ALAKYTQGFSGADITEICQRACKYAIRE 705 (764)
Q Consensus 678 ~la~~~~g~sg~di~~~~~~a~~~a~~~ 705 (764)
.|..+.--.+-++|++++..|+..+...
T Consensus 396 ~L~~y~WPGNvrEL~~~i~ra~~~~~~~ 423 (509)
T PRK05022 396 ALLAYDWPGNVRELEHVISRAALLARAR 423 (509)
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhcCCC
Confidence 5555544457799999999999877543
No 393
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.41 E-value=2.2e-07 Score=95.09 Aligned_cols=110 Identities=22% Similarity=0.382 Sum_probs=76.5
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCe--EEEEech---hhhh------------------------------
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGP---EIMS------------------------------ 280 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~--~i~v~~~---~l~~------------------------------ 280 (764)
++.+..++-+.|.||+|+|||||+|.||+..... .+.+++. +...
T Consensus 22 ~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFG 101 (345)
T COG1118 22 SLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFG 101 (345)
T ss_pred eeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechhhcccchHHhhhhhc
Confidence 3456788999999999999999999999975321 2333322 1100
Q ss_pred -------------------------------hccc--hhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHH
Q 004267 281 -------------------------------KLAG--ESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERR 327 (764)
Q Consensus 281 -------------------------------~~~g--~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~ 327 (764)
.|.. ...++-+-.+..|..-.|.+|++|| +.+..+..
T Consensus 102 l~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDE----------Pf~ALDa~ 171 (345)
T COG1118 102 LKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDE----------PFGALDAK 171 (345)
T ss_pred ccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecC----------CchhhhHH
Confidence 0000 0112234455677778899999999 77778888
Q ss_pred HHHHHHHHhhcccCCCeEEEEEecCCCC
Q 004267 328 IVSQLLTLMDGLKSRAHVIVIGATNRPN 355 (764)
Q Consensus 328 v~~~Ll~~ld~~~~~~~v~vI~atn~~~ 355 (764)
+...|..+|..+..+.++.++..|++++
T Consensus 172 vr~~lr~wLr~~~~~~~~ttvfVTHD~e 199 (345)
T COG1118 172 VRKELRRWLRKLHDRLGVTTVFVTHDQE 199 (345)
T ss_pred HHHHHHHHHHHHHHhhCceEEEEeCCHH
Confidence 8888888888888887888888898754
No 394
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.41 E-value=4.7e-07 Score=96.75 Aligned_cols=110 Identities=20% Similarity=0.332 Sum_probs=77.1
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCe--EEEEechhhhh---------------------------------
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGPEIMS--------------------------------- 280 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~--~i~v~~~~l~~--------------------------------- 280 (764)
++.+.+++.+.|.||+||||||++|+||+..... -+.++|.++..
T Consensus 25 sl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~ 104 (352)
T COG3842 25 SLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKV 104 (352)
T ss_pred eeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhh
Confidence 4466788889999999999999999999864211 13333222200
Q ss_pred ---------------------------hccc--hhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHH
Q 004267 281 ---------------------------KLAG--ESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQ 331 (764)
Q Consensus 281 ---------------------------~~~g--~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~ 331 (764)
.+.. ...++-|-.+..|....|.+|++|| +-+..+..+..+
T Consensus 105 ~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDE----------PlSaLD~kLR~~ 174 (352)
T COG3842 105 RKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDE----------PLSALDAKLREQ 174 (352)
T ss_pred cCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcC----------cccchhHHHHHH
Confidence 0000 0112335556677788999999999 667788888888
Q ss_pred HHHHhhcccCCCeEEEEEecCCCC
Q 004267 332 LLTLMDGLKSRAHVIVIGATNRPN 355 (764)
Q Consensus 332 Ll~~ld~~~~~~~v~vI~atn~~~ 355 (764)
+...+..+....++.+|-.||+.+
T Consensus 175 mr~Elk~lq~~~giT~i~VTHDqe 198 (352)
T COG3842 175 MRKELKELQRELGITFVYVTHDQE 198 (352)
T ss_pred HHHHHHHHHHhcCCeEEEEECCHH
Confidence 888888888877888888898753
No 395
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.40 E-value=5.1e-07 Score=102.85 Aligned_cols=197 Identities=19% Similarity=0.281 Sum_probs=113.0
Q ss_pred ccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHh---CCeeEEEecccchh-
Q 004267 478 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLT- 553 (764)
Q Consensus 478 v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~---~~~~i~v~~~~l~~- 553 (764)
..|+++.|.....+.+.+.+.. +. .....+||+|++||||+++|+++-..+ +.+|+.++|..+-.
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~----------~A-~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~ 277 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRL----------YA-RSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAES 277 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHH----------Hh-CCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChh
Confidence 4467788877766655544321 11 123459999999999999999998764 57999999976532
Q ss_pred ----cccCcch--------HHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCC-----
Q 004267 554 ----MWFGESE--------ANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS----- 616 (764)
Q Consensus 554 ----~~~g~se--------~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~----- 616 (764)
..+|..+ ..-..+|+.|.. ..||||||+.+.. .+...|+..|+.-.
T Consensus 278 lleseLFG~~~gaftga~~~~~~Gl~e~A~g---GTLfLdeI~~Lp~--------------~~Q~~Ll~~L~~~~~~r~g 340 (526)
T TIGR02329 278 LLEAELFGYEEGAFTGARRGGRTGLIEAAHR---GTLFLDEIGEMPL--------------PLQTRLLRVLEEREVVRVG 340 (526)
T ss_pred HHHHHhcCCcccccccccccccccchhhcCC---ceEEecChHhCCH--------------HHHHHHHHHHhcCcEEecC
Confidence 1122111 011234555543 3899999999743 23344454443211
Q ss_pred C----CCcEEEEecCCCCC--CCCccCCCC---Cccc-eEEeecCCCH--HHHHHHHHHHhccC----CCCCccc-HHH-
Q 004267 617 A----KKTVFIIGATNRPD--IIDPALLRP---GRLD-QLIYIPLPDE--DSRHQIFKACLRKS----PVSKDVD-LRA- 678 (764)
Q Consensus 617 ~----~~~v~vi~aTn~~~--~ld~allrp---gRf~-~~i~~~~p~~--~~r~~Il~~~~~~~----~~~~~~~-l~~- 678 (764)
. .-++-+|+|||..- .+....+|+ -|+. ..|++|+.-+ ++...+++.++++. .+.-+.+ +..
T Consensus 341 ~~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~ 420 (526)
T TIGR02329 341 GTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVL 420 (526)
T ss_pred CCceeeecceEEeccCCCHHHHhhhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHh
Confidence 1 12356888887642 233322221 1443 4667776643 45666666666543 2211111 222
Q ss_pred ------HHHHCCCCCHHHHHHHHHHHHHHH
Q 004267 679 ------LAKYTQGFSGADITEICQRACKYA 702 (764)
Q Consensus 679 ------la~~~~g~sg~di~~~~~~a~~~a 702 (764)
|..+.--.+-++|++++.+++..+
T Consensus 421 ~~~~~~L~~y~WPGNvrEL~nvier~~i~~ 450 (526)
T TIGR02329 421 AGVADPLQRYPWPGNVRELRNLVERLALEL 450 (526)
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHHHhc
Confidence 444443346789999999988754
No 396
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.40 E-value=1.1e-06 Score=82.08 Aligned_cols=32 Identities=31% Similarity=0.505 Sum_probs=28.7
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 267 (764)
++.+.+++.++|+||+|||||||.|.+|....
T Consensus 23 sl~v~~Ge~iaitGPSG~GKStllk~va~Lis 54 (223)
T COG4619 23 SLSVRAGEFIAITGPSGCGKSTLLKIVASLIS 54 (223)
T ss_pred eeeecCCceEEEeCCCCccHHHHHHHHHhccC
Confidence 45678999999999999999999999998763
No 397
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.39 E-value=1.3e-06 Score=87.46 Aligned_cols=122 Identities=25% Similarity=0.401 Sum_probs=78.1
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCe--EEEEechhhh----------------------------------
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGPEIM---------------------------------- 279 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~--~i~v~~~~l~---------------------------------- 279 (764)
++.+.+++.+.|.||+|||||||+..+++..... .+.+++.++.
T Consensus 25 ~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv 104 (226)
T COG1136 25 NLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENV 104 (226)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHH
Confidence 4567889999999999999999999998764211 1222221110
Q ss_pred ------h--------------------------hccc--hhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHH
Q 004267 280 ------S--------------------------KLAG--ESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVE 325 (764)
Q Consensus 280 ------~--------------------------~~~g--~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~ 325 (764)
. .+.. ...++-|-.+..|....|.+|+-|| |.+..+
T Consensus 105 ~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADE----------PTgnLD 174 (226)
T COG1136 105 ELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADE----------PTGNLD 174 (226)
T ss_pred HhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeC----------ccccCC
Confidence 0 0000 0112335556677788999999999 566666
Q ss_pred HHHHHHHHHHhhcccCCCeEEEEEecCCCCCCChhhhccCCcceEEEec
Q 004267 326 RRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIG 374 (764)
Q Consensus 326 ~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~rf~~~i~i~ 374 (764)
..-...++.++..+....+..+|..||++. +.. +.++.|.+.
T Consensus 175 ~~t~~~V~~ll~~~~~~~g~tii~VTHd~~-----lA~--~~dr~i~l~ 216 (226)
T COG1136 175 SKTAKEVLELLRELNKERGKTIIMVTHDPE-----LAK--YADRVIELK 216 (226)
T ss_pred hHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-----HHH--hCCEEEEEe
Confidence 666677778887776655656666788643 333 566666553
No 398
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.39 E-value=9e-07 Score=95.09 Aligned_cols=131 Identities=21% Similarity=0.267 Sum_probs=89.0
Q ss_pred CCCcceeeeCCCCCChhHHHHHHHHHhC-------------------------CeeEEEecccchhcccC-----cchHH
Q 004267 513 SPSKGVLFYGPPGCGKTLLAKAIANECQ-------------------------ANFISVKGPELLTMWFG-----ESEAN 562 (764)
Q Consensus 513 ~~~~gill~GppGtGKT~lak~lA~~~~-------------------------~~~i~v~~~~l~~~~~g-----~se~~ 562 (764)
+.+..+||+||+|+|||++|+.+|..+. ..|+.+....-. ..-| -+-..
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~-~~~g~~~~~I~id~ 97 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDE-PENGRKLLQIKIDA 97 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEeccccc-ccccccCCCcCHHH
Confidence 4556799999999999999999999642 123334321000 0001 12456
Q ss_pred HHHHHHHHhh----CCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCCCCCccCC
Q 004267 563 VREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALL 638 (764)
Q Consensus 563 i~~~f~~a~~----~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~all 638 (764)
||++.+.+.. ....|+++|+++.+- ....+.||+.|+... .++.+|.+|+.++.+.|.+.
T Consensus 98 iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld--------------~~a~naLLk~LEep~--~~~~~Ilvth~~~~ll~ti~ 161 (325)
T PRK08699 98 VREIIDNVYLTSVRGGLRVILIHPAESMN--------------LQAANSLLKVLEEPP--PQVVFLLVSHAADKVLPTIK 161 (325)
T ss_pred HHHHHHHHhhCcccCCceEEEEechhhCC--------------HHHHHHHHHHHHhCc--CCCEEEEEeCChHhChHHHH
Confidence 7777766653 345699999998863 344567777777653 34556668888888888887
Q ss_pred CCCccceEEeecCCCHHHHHHHHHH
Q 004267 639 RPGRLDQLIYIPLPDEDSRHQIFKA 663 (764)
Q Consensus 639 rpgRf~~~i~~~~p~~~~r~~Il~~ 663 (764)
+ |+. .+.|++|+.++..+.+..
T Consensus 162 S--Rc~-~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 162 S--RCR-KMVLPAPSHEEALAYLRE 183 (325)
T ss_pred H--Hhh-hhcCCCCCHHHHHHHHHh
Confidence 6 774 888999999887766653
No 399
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.38 E-value=7e-07 Score=87.35 Aligned_cols=110 Identities=15% Similarity=0.052 Sum_probs=68.7
Q ss_pred hCCCCCceEEEECCCCCCHHHHHHHHHHHhCCe--EEEEechhh--hhhcc-chhHHHHHHHHHHHHhcCCeEEEEcccc
Q 004267 237 IGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGPEI--MSKLA-GESESNLRKAFEEAEKNAPSIIFIDEID 311 (764)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~--~i~v~~~~l--~~~~~-g~~~~~l~~vf~~a~~~~p~il~iDEid 311 (764)
+.+.+++.+.|.||+|+|||||++.|++.+... -+.+++..+ ..... -...++-+..+..+....|.++++||.
T Consensus 20 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEP- 98 (177)
T cd03222 20 GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEP- 98 (177)
T ss_pred cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECC-
Confidence 356788999999999999999999999976321 233333211 11110 112334556677777889999999994
Q ss_pred ccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCC
Q 004267 312 SIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNS 356 (764)
Q Consensus 312 ~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ 356 (764)
...++......+.+.+..+..+....+|.+||+++.
T Consensus 99 ---------ts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~ 134 (177)
T cd03222 99 ---------SAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAV 134 (177)
T ss_pred ---------cccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHH
Confidence 344444455556666655544332455567777543
No 400
>PF13173 AAA_14: AAA domain
Probab=98.38 E-value=2.2e-06 Score=79.41 Aligned_cols=70 Identities=31% Similarity=0.401 Sum_probs=46.6
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhC--CeEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEEcccccc
Q 004267 242 PKGILLYGPPGSGKTLIARAVANETG--AFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSI 313 (764)
Q Consensus 242 ~~~vLL~GppGtGKTtLar~la~~l~--~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l 313 (764)
.+.++|+||.||||||+++.++..+. ..++.++..+.......... +...+.+.....+.++||||+..+
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhh
Confidence 35699999999999999999998876 66677776554332111111 222332222235689999999876
No 401
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.37 E-value=2.1e-06 Score=91.54 Aligned_cols=129 Identities=13% Similarity=0.190 Sum_probs=91.1
Q ss_pred CCCcceeeeCCCCCChhHHHHHHHHHhCC-----------------------eeEEEecccchhcccCcchHHHHHHHHH
Q 004267 513 SPSKGVLFYGPPGCGKTLLAKAIANECQA-----------------------NFISVKGPELLTMWFGESEANVREIFDK 569 (764)
Q Consensus 513 ~~~~gill~GppGtGKT~lak~lA~~~~~-----------------------~~i~v~~~~l~~~~~g~se~~i~~~f~~ 569 (764)
+.+..+||+||.|+||+++|+++|..+-. .|+.+.... -++.+ +-..||++-+.
T Consensus 23 rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~~~I--~vdqiR~l~~~ 99 (319)
T PRK06090 23 RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK-EGKSI--TVEQIRQCNRL 99 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc-CCCcC--CHHHHHHHHHH
Confidence 44557999999999999999999986421 222222210 00111 23456666554
Q ss_pred Hh----hCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCCCCCccCCCCCccce
Q 004267 570 AR----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQ 645 (764)
Q Consensus 570 a~----~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~ 645 (764)
+. .....|++||++|.+. ...-|.||+.|+. +..++++|..|+.++.|-|.+++ |+.
T Consensus 100 ~~~~~~~~~~kV~iI~~ae~m~--------------~~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTI~S--RCq- 160 (319)
T PRK06090 100 AQESSQLNGYRLFVIEPADAMN--------------ESASNALLKTLEE--PAPNCLFLLVTHNQKRLLPTIVS--RCQ- 160 (319)
T ss_pred HhhCcccCCceEEEecchhhhC--------------HHHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHh--cce-
Confidence 43 3445799999999973 3456889999986 45678888888889999999887 886
Q ss_pred EEeecCCCHHHHHHHHHH
Q 004267 646 LIYIPLPDEDSRHQIFKA 663 (764)
Q Consensus 646 ~i~~~~p~~~~r~~Il~~ 663 (764)
.+.|++|+.++..+.+..
T Consensus 161 ~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 161 QWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred eEeCCCCCHHHHHHHHHH
Confidence 889999999887777654
No 402
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.37 E-value=4.3e-07 Score=89.58 Aligned_cols=112 Identities=19% Similarity=0.275 Sum_probs=68.9
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCe--EEEEechhhhh---------------------------hccc--
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGPEIMS---------------------------KLAG-- 284 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~--~i~v~~~~l~~---------------------------~~~g-- 284 (764)
++.+.+++.++|.||+|+|||||++.|++..... -+.+++.++.. ....
T Consensus 19 ~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~L 98 (180)
T cd03214 19 SLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNEL 98 (180)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccC
Confidence 4456889999999999999999999999976321 23344322110 0000
Q ss_pred hhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCC
Q 004267 285 ESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 357 (764)
Q Consensus 285 ~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~l 357 (764)
...++-+-.+..+....|.++++||. ...++......+.+.+..+..+.+..+|.+|++++.+
T Consensus 99 S~G~~qrl~laral~~~p~llllDEP----------~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 99 SGGERQRVLLARALAQEPPILLLDEP----------TSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCC----------ccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 01223344566677788999999994 3334444455666666665443234556677876544
No 403
>PRK09183 transposase/IS protein; Provisional
Probab=98.37 E-value=6.6e-07 Score=93.27 Aligned_cols=71 Identities=24% Similarity=0.412 Sum_probs=50.1
Q ss_pred CcceeeeCCCCCChhHHHHHHHHHh---CCeeEEEecccchhcccC-cchHHHHHHHHHHhhCCCeEEEEecccch
Q 004267 515 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFG-ESEANVREIFDKARQSAPCVLFFDELDSI 586 (764)
Q Consensus 515 ~~gill~GppGtGKT~lak~lA~~~---~~~~i~v~~~~l~~~~~g-~se~~i~~~f~~a~~~~p~iifiDEid~l 586 (764)
..+++|+||||||||+||.+++... +.....++.+++...+.. .....+..+|+... ..+.++++||++..
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~~-~~~dlLiiDdlg~~ 176 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGV-MAPRLLIIDEIGYL 176 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHHh-cCCCEEEEcccccC
Confidence 4569999999999999999998763 556667777777644321 11223556676542 45679999999764
No 404
>PF13173 AAA_14: AAA domain
Probab=98.37 E-value=2e-06 Score=79.72 Aligned_cols=120 Identities=21% Similarity=0.251 Sum_probs=70.2
Q ss_pred cceeeeCCCCCChhHHHHHHHHHhC--CeeEEEecccchhcccCcchHHHHHHHHHHhhCCCeEEEEecccchhhccCCC
Q 004267 516 KGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSS 593 (764)
Q Consensus 516 ~gill~GppGtGKT~lak~lA~~~~--~~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~ 593 (764)
+-++|+||.||||||+++.++.... .+++.++..+.......... +.+.|.........++|||||..+..
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~~~----- 75 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYLPD----- 75 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhhcc-----
Confidence 3489999999999999999998876 77888877665432111101 22333332222567999999988621
Q ss_pred CCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCCCC--CccCCCCCccceEEeecCCCHHH
Q 004267 594 VGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDII--DPALLRPGRLDQLIYIPLPDEDS 656 (764)
Q Consensus 594 ~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~l--d~allrpgRf~~~i~~~~p~~~~ 656 (764)
....+..+.. .. .++-|+.|++....+ +-+-.-+||.. .+++.|.+..|
T Consensus 76 -------~~~~lk~l~d---~~---~~~~ii~tgS~~~~l~~~~~~~l~gr~~-~~~l~Plsf~E 126 (128)
T PF13173_consen 76 -------WEDALKFLVD---NG---PNIKIILTGSSSSLLSKDIAESLAGRVI-EIELYPLSFRE 126 (128)
T ss_pred -------HHHHHHHHHH---hc---cCceEEEEccchHHHhhcccccCCCeEE-EEEECCCCHHH
Confidence 2334444433 11 233444444433333 11222247886 77888777655
No 405
>PRK08181 transposase; Validated
Probab=98.37 E-value=1.2e-06 Score=91.21 Aligned_cols=101 Identities=23% Similarity=0.412 Sum_probs=62.8
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHh---CCeEEEEechhhhhhccch-hHHHHHHHHHHHHhcCCeEEEEccccccCCC
Q 004267 241 PPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGE-SESNLRKAFEEAEKNAPSIIFIDEIDSIAPK 316 (764)
Q Consensus 241 ~~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~~~g~-~~~~l~~vf~~a~~~~p~il~iDEid~l~~~ 316 (764)
.+.+++|+||||||||+|+.+++.++ +..++.++..+++...... ........++.. ..+.+|+|||+......
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~~~~ 182 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYVTKD 182 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEeccccccCC
Confidence 46789999999999999999999765 5667777877776644211 111223344433 34579999999875432
Q ss_pred CCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCC
Q 004267 317 REKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRP 354 (764)
Q Consensus 317 ~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~ 354 (764)
. .....|.++++....+. -+|.|||.+
T Consensus 183 ~---------~~~~~Lf~lin~R~~~~--s~IiTSN~~ 209 (269)
T PRK08181 183 Q---------AETSVLFELISARYERR--SILITANQP 209 (269)
T ss_pred H---------HHHHHHHHHHHHHHhCC--CEEEEcCCC
Confidence 1 12244556665443332 244466654
No 406
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.36 E-value=3.7e-06 Score=95.20 Aligned_cols=47 Identities=28% Similarity=0.519 Sum_probs=35.8
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Q 004267 206 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (764)
Q Consensus 206 ~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 267 (764)
.|+++.|....++.+.- .+..+.+++|+|||||||||+++.+++.+.
T Consensus 190 d~~dv~Gq~~~~~al~~---------------aa~~g~~vlliG~pGsGKTtlar~l~~llp 236 (499)
T TIGR00368 190 DLKDIKGQQHAKRALEI---------------AAAGGHNLLLFGPPGSGKTMLASRLQGILP 236 (499)
T ss_pred CHHHhcCcHHHHhhhhh---------------hccCCCEEEEEecCCCCHHHHHHHHhcccC
Confidence 57788888776554422 224467899999999999999999998653
No 407
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.34 E-value=8.5e-06 Score=82.74 Aligned_cols=82 Identities=26% Similarity=0.265 Sum_probs=55.6
Q ss_pred EEEecCCC------------CCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCCCccc-HHHHHHHCCCCCH
Q 004267 622 FIIGATNR------------PDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVD-LRALAKYTQGFSG 688 (764)
Q Consensus 622 ~vi~aTn~------------~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~-l~~la~~~~g~sg 688 (764)
++++|||+ |+-|+-.|+. |+ .+|...+++.++..+||+.......+.-+.| ++.|......-|=
T Consensus 319 iiimaTNrgit~iRGTn~~SphGiP~D~lD--R~-lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsL 395 (454)
T KOG2680|consen 319 IIIMATNRGITRIRGTNYRSPHGIPIDLLD--RM-LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSL 395 (454)
T ss_pred EEEEEcCCceEEeecCCCCCCCCCcHHHhh--hh-heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhH
Confidence 67777776 4556556664 55 3677778999999999999987765543333 4445544444455
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004267 689 ADITEICQRACKYAIREN 706 (764)
Q Consensus 689 ~di~~~~~~a~~~a~~~~ 706 (764)
+--.+++..|.+.|.++.
T Consensus 396 RYai~Lit~a~~~~~krk 413 (454)
T KOG2680|consen 396 RYAIHLITAASLVCLKRK 413 (454)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 566678888888888775
No 408
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.34 E-value=2.8e-06 Score=78.81 Aligned_cols=98 Identities=22% Similarity=0.415 Sum_probs=59.2
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHh--------CCeEEEEechhhhh--------------hccc--hhHHHHHHHHHHH
Q 004267 242 PKGILLYGPPGSGKTLIARAVANET--------GAFFFCINGPEIMS--------------KLAG--ESESNLRKAFEEA 297 (764)
Q Consensus 242 ~~~vLL~GppGtGKTtLar~la~~l--------~~~~i~v~~~~l~~--------------~~~g--~~~~~l~~vf~~a 297 (764)
...++|+||||+|||++++.++..+ ...++.++++...+ .... ........+.+..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 5679999999999999999999987 56677777654321 0001 1223334444445
Q ss_pred HhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEec
Q 004267 298 EKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGAT 351 (764)
Q Consensus 298 ~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~at 351 (764)
......+|+|||+|.+. + ....+.|..+++ ...-.++++|+.
T Consensus 84 ~~~~~~~lviDe~~~l~-~---------~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLF-S---------DEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHH-T---------HHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcC-C---------HHHHHHHHHHHh--CCCCeEEEEECh
Confidence 55555599999999874 1 345556666665 333455565544
No 409
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.34 E-value=2.9e-06 Score=91.08 Aligned_cols=161 Identities=24% Similarity=0.368 Sum_probs=103.8
Q ss_pred CccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEec--------
Q 004267 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKG-------- 548 (764)
Q Consensus 477 ~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~-------- 548 (764)
++.|..+.|++..|..|.-...- +.-.|+|+.|+.|+||||++++||..+.---+...+
T Consensus 13 ~~pf~aivGqd~lk~aL~l~av~-------------P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~ 79 (423)
T COG1239 13 NLPFTAIVGQDPLKLALGLNAVD-------------PQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDD 79 (423)
T ss_pred ccchhhhcCchHHHHHHhhhhcc-------------cccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCC
Confidence 35567788998888766432111 123569999999999999999999976322211111
Q ss_pred c------------------------cchhcccCcchHH----------HH---HHHH---HHhhCCCeEEEEecccchhh
Q 004267 549 P------------------------ELLTMWFGESEAN----------VR---EIFD---KARQSAPCVLFFDELDSIAT 588 (764)
Q Consensus 549 ~------------------------~l~~~~~g~se~~----------i~---~~f~---~a~~~~p~iifiDEid~l~~ 588 (764)
+ .++..-.|.++.. ++ +.|+ .|+++ ..|+++||+..|.
T Consensus 80 P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~An-RGIlYvDEvnlL~- 157 (423)
T COG1239 80 PEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARAN-RGILYVDEVNLLD- 157 (423)
T ss_pred hhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhcc-CCEEEEecccccc-
Confidence 0 0111112333331 11 1121 12222 2599999998763
Q ss_pred ccCCCCCCCCcchHHHHHHHHHhhcCC-----------CCCCcEEEEecCCCCC-CCCccCCCCCccceEEeecCC-CHH
Q 004267 589 QRGSSVGDAGGAADRVLNQLLTEMDGM-----------SAKKTVFIIGATNRPD-IIDPALLRPGRLDQLIYIPLP-DED 655 (764)
Q Consensus 589 ~r~~~~~~~~~~~~~~~~~lL~~ld~~-----------~~~~~v~vi~aTn~~~-~ld~allrpgRf~~~i~~~~p-~~~ 655 (764)
+.+++.||+.+... ...-++++|+|+|.-+ .|-|-|+- ||...|.+..| +.+
T Consensus 158 -------------d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~ 222 (423)
T COG1239 158 -------------DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLE 222 (423)
T ss_pred -------------HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHH
Confidence 56788888766542 2345799999999754 67788887 99999999866 679
Q ss_pred HHHHHHHHHhcc
Q 004267 656 SRHQIFKACLRK 667 (764)
Q Consensus 656 ~r~~Il~~~~~~ 667 (764)
+|.+|.+.-+..
T Consensus 223 ~rv~Ii~r~~~f 234 (423)
T COG1239 223 ERVEIIRRRLAF 234 (423)
T ss_pred HHHHHHHHHHHh
Confidence 999999887754
No 410
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=1.3e-07 Score=102.61 Aligned_cols=47 Identities=34% Similarity=0.616 Sum_probs=37.7
Q ss_pred CccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHH
Q 004267 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANE 538 (764)
Q Consensus 477 ~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~ 538 (764)
...|.||.|++..|+.+.-... -..++||+||||||||+||+-+.+.
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAA---------------GgHnLl~~GpPGtGKTmla~Rl~~l 221 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAA---------------GGHNLLLVGPPGTGKTMLASRLPGL 221 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHh---------------cCCcEEEecCCCCchHHhhhhhccc
Confidence 3467899999999988764322 2356999999999999999988764
No 411
>PRK06526 transposase; Provisional
Probab=98.33 E-value=7.4e-07 Score=92.36 Aligned_cols=100 Identities=22% Similarity=0.327 Sum_probs=59.5
Q ss_pred CcceeeeCCCCCChhHHHHHHHHHh---CCeeEEEecccchhcccCc-chHHHHHHHHHHhhCCCeEEEEecccchhhcc
Q 004267 515 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGE-SEANVREIFDKARQSAPCVLFFDELDSIATQR 590 (764)
Q Consensus 515 ~~gill~GppGtGKT~lak~lA~~~---~~~~i~v~~~~l~~~~~g~-se~~i~~~f~~a~~~~p~iifiDEid~l~~~r 590 (764)
..+++|+||||||||+||.+++.++ +.....+..++++...... ....+...+... ..+.+|+|||++.+...
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~~~- 174 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIPFE- 174 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCCCC-
Confidence 4579999999999999999999874 4555555666655432110 111222333332 33579999999875321
Q ss_pred CCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCC
Q 004267 591 GSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRP 630 (764)
Q Consensus 591 ~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~ 630 (764)
.....++.+++..... .. -+|.|||.+
T Consensus 175 --------~~~~~~L~~li~~r~~---~~--s~IitSn~~ 201 (254)
T PRK06526 175 --------PEAANLFFQLVSSRYE---RA--SLIVTSNKP 201 (254)
T ss_pred --------HHHHHHHHHHHHHHHh---cC--CEEEEcCCC
Confidence 2233445555543321 12 367788865
No 412
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.33 E-value=1.5e-06 Score=89.31 Aligned_cols=100 Identities=21% Similarity=0.293 Sum_probs=65.9
Q ss_pred cceeeeCCCCCChhHHHHHHHHHh---CCeeEEEecccchhcccC---cchHHHHHHHHHHhhCCCeEEEEecccchhhc
Q 004267 516 KGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFG---ESEANVREIFDKARQSAPCVLFFDELDSIATQ 589 (764)
Q Consensus 516 ~gill~GppGtGKT~lak~lA~~~---~~~~i~v~~~~l~~~~~g---~se~~i~~~f~~a~~~~p~iifiDEid~l~~~ 589 (764)
.+++|+|+||||||+|+.++|..+ +..++.++.++++....+ ........+++... ...+|+|||++....
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~~- 176 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQTE- 176 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCCC-
Confidence 479999999999999999999986 667788888887754322 11222334555543 356999999987531
Q ss_pred cCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCC
Q 004267 590 RGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRP 630 (764)
Q Consensus 590 r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~ 630 (764)
+.+...++.+++..-- ..+.-+|.|||..
T Consensus 177 --------s~~~~~~l~~Ii~~Ry----~~~~~tiitSNl~ 205 (244)
T PRK07952 177 --------SRYEKVIINQIVDRRS----SSKRPTGMLTNSN 205 (244)
T ss_pred --------CHHHHHHHHHHHHHHH----hCCCCEEEeCCCC
Confidence 2344556666665421 1223577788863
No 413
>PRK06526 transposase; Provisional
Probab=98.33 E-value=1.2e-06 Score=90.89 Aligned_cols=101 Identities=21% Similarity=0.400 Sum_probs=59.1
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHh---CCeEEEEechhhhhhccch-hHHHHHHHHHHHHhcCCeEEEEccccccCCC
Q 004267 241 PPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGE-SESNLRKAFEEAEKNAPSIIFIDEIDSIAPK 316 (764)
Q Consensus 241 ~~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~~~g~-~~~~l~~vf~~a~~~~p~il~iDEid~l~~~ 316 (764)
.+.+++|+||||||||+|+.+|+.++ +..+..++..+++...... ....+...+... ..+.+|+|||++.+...
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~~~ 174 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIPFE 174 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCCCC
Confidence 46789999999999999999998875 5555556666555433211 011222223322 34679999999876422
Q ss_pred CCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCC
Q 004267 317 REKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRP 354 (764)
Q Consensus 317 ~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~ 354 (764)
. .....|..+++....+.. +|.+||.+
T Consensus 175 ~---------~~~~~L~~li~~r~~~~s--~IitSn~~ 201 (254)
T PRK06526 175 P---------EAANLFFQLVSSRYERAS--LIVTSNKP 201 (254)
T ss_pred H---------HHHHHHHHHHHHHHhcCC--EEEEcCCC
Confidence 1 122344555544333322 45577754
No 414
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.33 E-value=2.8e-06 Score=100.12 Aligned_cols=128 Identities=23% Similarity=0.226 Sum_probs=73.2
Q ss_pred CCCcceeeeCCCCCChhHHHHHHHHHhC-------CeeEEEecccchhcccCc-c-hHHH-HHHHHHHhhCCCeEEEEec
Q 004267 513 SPSKGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPELLTMWFGE-S-EANV-REIFDKARQSAPCVLFFDE 582 (764)
Q Consensus 513 ~~~~gill~GppGtGKT~lak~lA~~~~-------~~~i~v~~~~l~~~~~g~-s-e~~i-~~~f~~a~~~~p~iifiDE 582 (764)
+...++||+|.||||||.+|++++.... .++..+....... +.+. + +..+ .-.+..|. -.++++||
T Consensus 490 RgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~-~~d~~tG~~~le~GaLvlAd---gGtL~IDE 565 (915)
T PTZ00111 490 RGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIK-FNESDNGRAMIQPGAVVLAN---GGVCCIDE 565 (915)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhh-hcccccCcccccCCcEEEcC---CCeEEecc
Confidence 3344699999999999999999998642 2333332221110 0000 0 0000 00111222 24999999
Q ss_pred ccchhhccCCCCCCCCcchHHHHHHHHHhhcCCC-----------CCCcEEEEecCCCCC-------------CCCccCC
Q 004267 583 LDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-----------AKKTVFIIGATNRPD-------------IIDPALL 638 (764)
Q Consensus 583 id~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~-----------~~~~v~vi~aTn~~~-------------~ld~all 638 (764)
++.+.. .....|+..|+.-. -..++-||||+|... .|.++++
T Consensus 566 idkms~--------------~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LL 631 (915)
T PTZ00111 566 LDKCHN--------------ESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLF 631 (915)
T ss_pred hhhCCH--------------HHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHh
Confidence 999743 23344555554321 124788999999742 4568899
Q ss_pred CCCccceEEee-cCCCHHHHHHH
Q 004267 639 RPGRLDQLIYI-PLPDEDSRHQI 660 (764)
Q Consensus 639 rpgRf~~~i~~-~~p~~~~r~~I 660 (764)
. |||.++.+ +.|+.+.=..|
T Consensus 632 S--RFDLIf~l~D~~d~~~D~~l 652 (915)
T PTZ00111 632 T--RFDLIYLVLDHIDQDTDQLI 652 (915)
T ss_pred h--hhcEEEEecCCCChHHHHHH
Confidence 8 99977554 56676543343
No 415
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.32 E-value=5.8e-06 Score=80.23 Aligned_cols=118 Identities=28% Similarity=0.490 Sum_probs=70.1
Q ss_pred cChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCeEEEEechhhhhh-----c
Q 004267 211 GGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSK-----L 282 (764)
Q Consensus 211 ~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~-----~ 282 (764)
.|-+..++++++.+.... ..+..|||+|++||||+++|++|-+.. +.+|+.++|..+... .
T Consensus 2 iG~s~~m~~~~~~~~~~a-----------~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~L 70 (168)
T PF00158_consen 2 IGESPAMKRLREQAKRAA-----------SSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESEL 70 (168)
T ss_dssp S--SHHHHHHHHHHHHHT-----------TSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHH
T ss_pred EeCCHHHHHHHHHHHHHh-----------CCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhh
Confidence 455566666666554322 234689999999999999999998765 468999999765322 1
Q ss_pred cchhH-------HHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhccc-----C----CCeEE
Q 004267 283 AGESE-------SNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK-----S----RAHVI 346 (764)
Q Consensus 283 ~g~~~-------~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-----~----~~~v~ 346 (764)
.|... ..-.-.|+.|.. ..||||||+.|.+ .+...|+..++.-. . ..++-
T Consensus 71 FG~~~~~~~~~~~~~~G~l~~A~~---GtL~Ld~I~~L~~-----------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~R 136 (168)
T PF00158_consen 71 FGHEKGAFTGARSDKKGLLEQANG---GTLFLDEIEDLPP-----------ELQAKLLRVLEEGKFTRLGSDKPVPVDVR 136 (168)
T ss_dssp HEBCSSSSTTTSSEBEHHHHHTTT---SEEEEETGGGS-H-----------HHHHHHHHHHHHSEEECCTSSSEEE--EE
T ss_pred hccccccccccccccCCceeeccc---eEEeecchhhhHH-----------HHHHHHHHHHhhchhccccccccccccce
Confidence 11100 001134455443 5999999998853 23455666665311 1 23688
Q ss_pred EEEecCC
Q 004267 347 VIGATNR 353 (764)
Q Consensus 347 vI~atn~ 353 (764)
+|++|+.
T Consensus 137 iI~st~~ 143 (168)
T PF00158_consen 137 IIASTSK 143 (168)
T ss_dssp EEEEESS
T ss_pred EEeecCc
Confidence 8888885
No 416
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=98.32 E-value=1.4e-06 Score=92.64 Aligned_cols=109 Identities=21% Similarity=0.360 Sum_probs=74.7
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCe--EEEEechhhhh-------------------------------hc
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGPEIMS-------------------------------KL 282 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~--~i~v~~~~l~~-------------------------------~~ 282 (764)
++.+..++.+.|.||+||||||++|.||+..... -+.+++.++.. +.
T Consensus 23 ~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~ 102 (338)
T COG3839 23 NLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKL 102 (338)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhh
Confidence 4456788999999999999999999999875311 12222221100 00
Q ss_pred c----chhH--------------------------HHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHH
Q 004267 283 A----GESE--------------------------SNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 332 (764)
Q Consensus 283 ~----g~~~--------------------------~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L 332 (764)
. .+.+ ++-|-.+..|.-..|.++++|| +-+.++.++..++
T Consensus 103 ~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DE----------PlSnLDa~lR~~m 172 (338)
T COG3839 103 RGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDE----------PLSNLDAKLRVLM 172 (338)
T ss_pred CCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecC----------chhHhhHHHHHHH
Confidence 0 0111 1223345566667899999999 7777888888888
Q ss_pred HHHhhcccCCCeEEEEEecCCC
Q 004267 333 LTLMDGLKSRAHVIVIGATNRP 354 (764)
Q Consensus 333 l~~ld~~~~~~~v~vI~atn~~ 354 (764)
...+..++.+.+..+|-.||+.
T Consensus 173 r~ei~~lh~~l~~T~IYVTHDq 194 (338)
T COG3839 173 RSEIKKLHERLGTTTIYVTHDQ 194 (338)
T ss_pred HHHHHHHHHhcCCcEEEEcCCH
Confidence 8888888877777888888875
No 417
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.30 E-value=1e-06 Score=93.87 Aligned_cols=101 Identities=27% Similarity=0.351 Sum_probs=63.8
Q ss_pred CCcceeeeCCCCCChhHHHHHHHHHh---CCeeEEEecccchhcccCc-chHHHHHHHHHHhhCCCeEEEEecccchhhc
Q 004267 514 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGE-SEANVREIFDKARQSAPCVLFFDELDSIATQ 589 (764)
Q Consensus 514 ~~~gill~GppGtGKT~lak~lA~~~---~~~~i~v~~~~l~~~~~g~-se~~i~~~f~~a~~~~p~iifiDEid~l~~~ 589 (764)
..+|++|+||+|||||+||.++|+++ +.....+..++++...... ....+...++.... ..+|+|||+..-..
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~~--~dlLiIDDiG~e~~- 231 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVKE--APVLMLDDIGAEQM- 231 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhcC--CCEEEEecCCCccc-
Confidence 34789999999999999999999986 5667777777776433211 11123344444443 35999999976321
Q ss_pred cCCCCCCCCcchH-HHHHHHHHh-hcCCCCCCcEEEEecCCCC
Q 004267 590 RGSSVGDAGGAAD-RVLNQLLTE-MDGMSAKKTVFIIGATNRP 630 (764)
Q Consensus 590 r~~~~~~~~~~~~-~~~~~lL~~-ld~~~~~~~v~vi~aTn~~ 630 (764)
+.+.. .++..+++. |.. +.-.|.|||.+
T Consensus 232 --------s~~~~~~ll~~Il~~R~~~-----~~~ti~TSNl~ 261 (306)
T PRK08939 232 --------SSWVRDEVLGVILQYRMQE-----ELPTFFTSNFD 261 (306)
T ss_pred --------cHHHHHHHHHHHHHHHHHC-----CCeEEEECCCC
Confidence 22332 455555543 222 23578899854
No 418
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.30 E-value=1.7e-06 Score=84.51 Aligned_cols=110 Identities=23% Similarity=0.352 Sum_probs=69.6
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCe--EEEEechhhhh-------h---ccc---------------hhHH
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGPEIMS-------K---LAG---------------ESES 288 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~--~i~v~~~~l~~-------~---~~g---------------~~~~ 288 (764)
++.+.++..+.|.||+|+|||||++.|++..... -+.+++..+.. . +.. ...+
T Consensus 22 ~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G~ 101 (171)
T cd03228 22 SLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQ 101 (171)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhCHHH
Confidence 3567889999999999999999999999986421 13333322110 0 000 0122
Q ss_pred HHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCC
Q 004267 289 NLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 357 (764)
Q Consensus 289 ~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~l 357 (764)
+-+-.+..+....|.++++||- ...++......+.+++..+.. ...+|.+|++++.+
T Consensus 102 ~~rl~la~al~~~p~llllDEP----------~~gLD~~~~~~l~~~l~~~~~--~~tii~~sh~~~~~ 158 (171)
T cd03228 102 RQRIAIARALLRDPPILILDEA----------TSALDPETEALILEALRALAK--GKTVIVIAHRLSTI 158 (171)
T ss_pred HHHHHHHHHHhcCCCEEEEECC----------CcCCCHHHHHHHHHHHHHhcC--CCEEEEEecCHHHH
Confidence 3344566777789999999993 344444455666666666643 25666678876554
No 419
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.30 E-value=5.2e-06 Score=84.93 Aligned_cols=180 Identities=31% Similarity=0.440 Sum_probs=93.5
Q ss_pred ChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeE---EEEec---h------hh-
Q 004267 212 GVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFF---FCING---P------EI- 278 (764)
Q Consensus 212 Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~---i~v~~---~------~l- 278 (764)
|-++++++|.+.+.. .+...++|+||.|+|||+|++.+...+...- +.+.. . .+
T Consensus 3 gR~~el~~l~~~l~~-------------~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 69 (234)
T PF01637_consen 3 GREKELEKLKELLES-------------GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFI 69 (234)
T ss_dssp S-HHHHHHHHHCHHH---------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh-------------hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHH
Confidence 556666777665542 2356899999999999999999999883211 11111 0 00
Q ss_pred ------------hh-h------------ccchhHHHHHHHHHHHHhcC-CeEEEEccccccC-CCCCCCchHHHHHHHHH
Q 004267 279 ------------MS-K------------LAGESESNLRKAFEEAEKNA-PSIIFIDEIDSIA-PKREKTHGEVERRIVSQ 331 (764)
Q Consensus 279 ------------~~-~------------~~g~~~~~l~~vf~~a~~~~-p~il~iDEid~l~-~~~~~~~~~~~~~v~~~ 331 (764)
.. . ........+..+++...... ..+|+|||++.+. .... ...+...
T Consensus 70 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~------~~~~~~~ 143 (234)
T PF01637_consen 70 EETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEE------DKDFLKS 143 (234)
T ss_dssp HHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTT------THHHHHH
T ss_pred HHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccc------hHHHHHH
Confidence 00 0 00122345666666665543 4899999999987 2211 1345566
Q ss_pred HHHHhhcccCCCeEEEEEecCCCC---C-CChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCC-C-CCchhhhHHhh
Q 004267 332 LLTLMDGLKSRAHVIVIGATNRPN---S-IDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMK-L-SDDVDLERIAK 405 (764)
Q Consensus 332 Ll~~ld~~~~~~~v~vI~atn~~~---~-ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~-l-~~~~~l~~la~ 405 (764)
|.+.++......++.+|.+..... . .+..-.-.+|+.. +.++..+.++..+++........ + .++.+++.+..
T Consensus 144 l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~ 222 (234)
T PF01637_consen 144 LRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSH-IELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYS 222 (234)
T ss_dssp HHHHHHH----TTEEEEEEESSHHHHHHTT-TTSTTTT---E-EEE----HHHHHHHHHHHHHCC------HHHHHHHHH
T ss_pred HHHHHhhccccCCceEEEECCchHHHHHhhcccCccccccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHH
Confidence 777777644444444443332211 0 1111112346766 99999999999999887765541 1 24556777777
Q ss_pred hcCCCc
Q 004267 406 DTHGYV 411 (764)
Q Consensus 406 ~t~g~~ 411 (764)
.+.|+.
T Consensus 223 ~~gG~P 228 (234)
T PF01637_consen 223 LTGGNP 228 (234)
T ss_dssp HHTT-H
T ss_pred HhCCCH
Confidence 777764
No 420
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.29 E-value=7.2e-06 Score=93.08 Aligned_cols=172 Identities=18% Similarity=0.246 Sum_probs=97.0
Q ss_pred cceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccch-------hcccCcchH-----HHHHHHH-----HHhh------
Q 004267 516 KGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-------TMWFGESEA-----NVREIFD-----KARQ------ 572 (764)
Q Consensus 516 ~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~-------~~~~g~se~-----~i~~~f~-----~a~~------ 572 (764)
+-+||+|||||||||++++||++++........+... ..|.+.... .-...|. .++.
T Consensus 46 ~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~ 125 (519)
T PF03215_consen 46 RILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMS 125 (519)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCccccccccccccccccccccccchhhhhcccccccccccccccc
Confidence 4588999999999999999999999888876443221 111111110 0011222 1121
Q ss_pred -----CCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEec-C------CCC--------CC
Q 004267 573 -----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGA-T------NRP--------DI 632 (764)
Q Consensus 573 -----~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~a-T------n~~--------~~ 632 (764)
....||++||+=.+... ...++-+.|.+.+..-... .+++|.+ + |.. ..
T Consensus 126 g~~~~~~~kvILVEDlPN~~~~----------~~~~f~~~L~~~l~~~~~~-PlV~iiSe~~~~~~~~~~~~~~~t~~~L 194 (519)
T PF03215_consen 126 GSNSSSNKKVILVEDLPNVFHR----------DTSRFREALRQYLRSSRCL-PLVFIISETESLSGDNSYRSNSFTAERL 194 (519)
T ss_pred CCCcCCCceEEEeeccccccch----------hHHHHHHHHHHHHHcCCCC-CEEEEEecccccCCCCcccccchhhhhc
Confidence 24679999998754431 1133333333333321111 5666666 1 111 14
Q ss_pred CCccCCCCCccceEEeecCCCHHHHHHHHHHHhccC--------CCCCccc-HHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q 004267 633 IDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKS--------PVSKDVD-LRALAKYTQGFSGADITEICQRACKYAI 703 (764)
Q Consensus 633 ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~--------~~~~~~~-l~~la~~~~g~sg~di~~~~~~a~~~a~ 703 (764)
+.+.++.-.++ .+|.|.+-...-..+-|+..+... ......+ ++.|+..+. +||+..+..-.+.|.
T Consensus 195 ~~~~il~~~~i-~~I~FNpIa~T~mkKaL~rI~~~E~~~~~~~~~~p~~~~~l~~I~~~s~----GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 195 FPKEILNHPGI-TRIKFNPIAPTFMKKALKRILKKEARSSSGKNKVPDKQSVLDSIAESSN----GDIRSAINNLQFWCL 269 (519)
T ss_pred cCHHHHhCCCc-eEEEecCCCHHHHHHHHHHHHHHHhhhhcCCccCCChHHHHHHHHHhcC----chHHHHHHHHHHHhc
Confidence 45555542244 478898887766666665555332 1122223 677777654 499999988888887
No 421
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.28 E-value=2.4e-06 Score=85.19 Aligned_cols=110 Identities=20% Similarity=0.297 Sum_probs=74.8
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCe--EEEEechhhhh---------------------------------
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGPEIMS--------------------------------- 280 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~--~i~v~~~~l~~--------------------------------- 280 (764)
++.+.+++.+.|+|++|||||||+|+|++..... -+.++|..+..
T Consensus 27 S~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~ 106 (252)
T COG1124 27 SLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILS 106 (252)
T ss_pred eEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHh
Confidence 3457889999999999999999999999865321 12233211100
Q ss_pred ------------------------------hccch--hHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHH
Q 004267 281 ------------------------------KLAGE--SESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRI 328 (764)
Q Consensus 281 ------------------------------~~~g~--~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v 328 (764)
.+..+ ..++-|-.+..|....|.+|++|| +.+..|..+
T Consensus 107 Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDE----------ptSaLD~si 176 (252)
T COG1124 107 EPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDE----------PTSALDVSV 176 (252)
T ss_pred hhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecC----------chhhhcHHH
Confidence 00000 112234456677778899999999 555666778
Q ss_pred HHHHHHHhhcccCCCeEEEEEecCCCC
Q 004267 329 VSQLLTLMDGLKSRAHVIVIGATNRPN 355 (764)
Q Consensus 329 ~~~Ll~~ld~~~~~~~v~vI~atn~~~ 355 (764)
..++++++..+....+..+|..|++..
T Consensus 177 Qa~IlnlL~~l~~~~~lt~l~IsHdl~ 203 (252)
T COG1124 177 QAQILNLLLELKKERGLTYLFISHDLA 203 (252)
T ss_pred HHHHHHHHHHHHHhcCceEEEEeCcHH
Confidence 888999998888877777777788754
No 422
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.28 E-value=1.1e-07 Score=96.92 Aligned_cols=42 Identities=24% Similarity=0.429 Sum_probs=32.6
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCe--EEEEechh
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGPE 277 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~--~i~v~~~~ 277 (764)
++.+.+++.++|+||||||||||++.+++.+... .+.+++.+
T Consensus 24 ~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~ 67 (235)
T COG1122 24 SLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLD 67 (235)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCee
Confidence 4567888999999999999999999999987433 23454443
No 423
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.27 E-value=2.1e-05 Score=84.94 Aligned_cols=217 Identities=21% Similarity=0.262 Sum_probs=134.0
Q ss_pred CCCcceeeeCCCCCChhHHHHHHHHHh----C-CeeEEEecccch----------hcc----cC-cchHHHHHHHHHHhh
Q 004267 513 SPSKGVLFYGPPGCGKTLLAKAIANEC----Q-ANFISVKGPELL----------TMW----FG-ESEANVREIFDKARQ 572 (764)
Q Consensus 513 ~~~~gill~GppGtGKT~lak~lA~~~----~-~~~i~v~~~~l~----------~~~----~g-~se~~i~~~f~~a~~ 572 (764)
..+..+.+.|.||||||.+..-+-... . ...+++++-.+. +.+ +| .++......|+.-..
T Consensus 173 ~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~ 252 (529)
T KOG2227|consen 173 NTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTK 252 (529)
T ss_pred ccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh
Confidence 445569999999999999888554432 2 244777776432 111 11 123334455544332
Q ss_pred -C-CCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCCCCCccCCC----CCccceE
Q 004267 573 -S-APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLR----PGRLDQL 646 (764)
Q Consensus 573 -~-~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr----pgRf~~~ 646 (764)
. .+=++++||+|.|+.++. .++.++ -++..+ ...++++||..|..|.-|..|.| -+--...
T Consensus 253 q~k~~~llVlDEmD~L~tr~~-----------~vLy~l-Fewp~l-p~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~ 319 (529)
T KOG2227|consen 253 QSKFMLLLVLDEMDHLITRSQ-----------TVLYTL-FEWPKL-PNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKL 319 (529)
T ss_pred cccceEEEEechhhHHhhccc-----------ceeeee-hhcccC-CcceeeeeeehhhhhHHHHHhhhhhhccCCCCce
Confidence 2 356999999999985321 122222 233433 35678888999988876654432 2345679
Q ss_pred EeecCCCHHHHHHHHHHHhccCCCCCccc--HHHHHHHCCCCCHH--HHHHHHHHHHHHHHHHHHHHhHHHHhhhcCCCc
Q 004267 647 IYIPLPDEDSRHQIFKACLRKSPVSKDVD--LRALAKYTQGFSGA--DITEICQRACKYAIRENIEKDIERERRRRDNPE 722 (764)
Q Consensus 647 i~~~~p~~~~r~~Il~~~~~~~~~~~~~~--l~~la~~~~g~sg~--di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~ 722 (764)
+.|++++.++..+||+..+...+.....+ ++..|+...+.||. .+-.+|+.|...|..+.-....+ ....
T Consensus 320 l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~aiEI~E~e~r~~~~~------~l~~ 393 (529)
T KOG2227|consen 320 LVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAIEIAEIEKRKILDD------PLSP 393 (529)
T ss_pred eeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHhhcccc------CCCC
Confidence 99999999999999999998876654443 66777887787773 44457888877776554211100 0000
Q ss_pred cccccccccccccccHHHHHHHHHhcCCCC
Q 004267 723 AMDEDAAEDEVSEIKAAHFEESMKFARRSI 752 (764)
Q Consensus 723 ~~~~~~~~~~~~~i~~~~f~~a~~~~~~s~ 752 (764)
-........|..+|+-.++.++--+-
T Consensus 394 ----~~~p~~~~~v~~~~va~viSk~~~s~ 419 (529)
T KOG2227|consen 394 ----GTSPEKKKKVGVEHVAAVISKVDGSP 419 (529)
T ss_pred ----CCCcccccccchHHHHHHhhhhccCh
Confidence 00111224678999999888776553
No 424
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.27 E-value=2.1e-06 Score=87.83 Aligned_cols=160 Identities=21% Similarity=0.381 Sum_probs=88.4
Q ss_pred CcceeeeCCCCCChhHHHHHHHHHhCC-ee--EEEeccc-c---------------------hhc-------------cc
Q 004267 515 SKGVLFYGPPGCGKTLLAKAIANECQA-NF--ISVKGPE-L---------------------LTM-------------WF 556 (764)
Q Consensus 515 ~~gill~GppGtGKT~lak~lA~~~~~-~~--i~v~~~~-l---------------------~~~-------------~~ 556 (764)
...++++||.|+|||+|++.+...... ++ +.+...+ . +.. ..
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDLS 99 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcch
Confidence 456999999999999999999998732 11 1111100 0 000 00
Q ss_pred CcchHHHHHHHHHHhhCC-CeEEEEecccchh-hccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcE-EEEecCCC--C-
Q 004267 557 GESEANVREIFDKARQSA-PCVLFFDELDSIA-TQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTV-FIIGATNR--P- 630 (764)
Q Consensus 557 g~se~~i~~~f~~a~~~~-p~iifiDEid~l~-~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v-~vi~aTn~--~- 630 (764)
......+..+++...... ..||+|||++.+. ..+ ....++..|.+.++......++ +|+++|+. .
T Consensus 100 ~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~ 170 (234)
T PF01637_consen 100 EDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASE---------EDKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLME 170 (234)
T ss_dssp GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTT---------TTHHHHHHHHHHHHH----TTEEEEEEESSHHHHH
T ss_pred hhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhccc---------chHHHHHHHHHHHhhccccCCceEEEECCchHHHH
Confidence 112345666666665543 3899999999997 211 2356667777777764444444 44444442 1
Q ss_pred C--CCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCC-C-CCcccHHHHHHHCCCC
Q 004267 631 D--IIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSP-V-SKDVDLRALAKYTQGF 686 (764)
Q Consensus 631 ~--~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~-~-~~~~~l~~la~~~~g~ 686 (764)
+ .-++.+. +|+.. +++++.+.++..++++..++... + .++.+++.+...+.|.
T Consensus 171 ~~~~~~~~~~--~~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~ 227 (234)
T PF01637_consen 171 EFLDDKSPLF--GRFSH-IELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGN 227 (234)
T ss_dssp HTT-TTSTTT--T---E-EEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-
T ss_pred HhhcccCccc--cccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCC
Confidence 1 1122333 48887 99999999999999999886661 1 2566778888888764
No 425
>PRK12377 putative replication protein; Provisional
Probab=98.26 E-value=2.4e-06 Score=88.03 Aligned_cols=100 Identities=23% Similarity=0.282 Sum_probs=61.2
Q ss_pred cceeeeCCCCCChhHHHHHHHHHh---CCeeEEEecccchhcccCc--chHHHHHHHHHHhhCCCeEEEEecccchhhcc
Q 004267 516 KGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGE--SEANVREIFDKARQSAPCVLFFDELDSIATQR 590 (764)
Q Consensus 516 ~gill~GppGtGKT~lak~lA~~~---~~~~i~v~~~~l~~~~~g~--se~~i~~~f~~a~~~~p~iifiDEid~l~~~r 590 (764)
.+++|+||||||||+||.++|+.+ +..++.+..++++...-.. .......+++... ...+|+|||+.....
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l~--~~dLLiIDDlg~~~~-- 177 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQELC--KVDLLVLDEIGIQRE-- 177 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCCCC--
Confidence 579999999999999999999976 5567777777776532110 0011223444433 346999999976421
Q ss_pred CCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCC
Q 004267 591 GSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRP 630 (764)
Q Consensus 591 ~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~ 630 (764)
+.....++.+++..-.+ ...-+|.|||..
T Consensus 178 -------s~~~~~~l~~ii~~R~~----~~~ptiitSNl~ 206 (248)
T PRK12377 178 -------TKNEQVVLNQIIDRRTA----SMRSVGMLTNLN 206 (248)
T ss_pred -------CHHHHHHHHHHHHHHHh----cCCCEEEEcCCC
Confidence 12344455555544221 122367789864
No 426
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.26 E-value=1.8e-06 Score=81.73 Aligned_cols=106 Identities=18% Similarity=0.274 Sum_probs=65.8
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCe--EEEEechh---hhhhccchhHHHHHHHHHHHHhcCCeEEEEccc
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGPE---IMSKLAGESESNLRKAFEEAEKNAPSIIFIDEI 310 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~--~i~v~~~~---l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEi 310 (764)
++.+.+++.+.|.||+|+|||||+++|++..... -+.+++.. +...+. ..+.-+-.+..+....|.++++||.
T Consensus 20 ~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS--~G~~~rv~laral~~~p~illlDEP 97 (144)
T cd03221 20 SLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLS--GGEKMRLALAKLLLENPNLLLLDEP 97 (144)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCC--HHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 3456889999999999999999999999986421 12333211 011111 1234445567777889999999994
Q ss_pred cccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCC
Q 004267 311 DSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 357 (764)
Q Consensus 311 d~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~l 357 (764)
. ...+......+.+.+..+. ..++.+|++++.+
T Consensus 98 ~----------~~LD~~~~~~l~~~l~~~~----~til~~th~~~~~ 130 (144)
T cd03221 98 T----------NHLDLESIEALEEALKEYP----GTVILVSHDRYFL 130 (144)
T ss_pred c----------cCCCHHHHHHHHHHHHHcC----CEEEEEECCHHHH
Confidence 3 3333344455555555542 2455577775433
No 427
>PRK06921 hypothetical protein; Provisional
Probab=98.26 E-value=4.4e-06 Score=87.38 Aligned_cols=69 Identities=29% Similarity=0.388 Sum_probs=45.4
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHh----CCeEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEEccccc
Q 004267 241 PPKGILLYGPPGSGKTLIARAVANET----GAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDS 312 (764)
Q Consensus 241 ~~~~vLL~GppGtGKTtLar~la~~l----~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~ 312 (764)
...+++|+||||+|||+|+.+||+++ +..++.+...+++....... ......++.. ....+|+|||++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~-~~~~~~~~~~--~~~dlLiIDDl~~ 188 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDF-DLLEAKLNRM--KKVEVLFIDDLFK 188 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHH-HHHHHHHHHh--cCCCEEEEecccc
Confidence 46789999999999999999999986 44566676655544321111 1112222222 3457999999954
No 428
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.26 E-value=2.7e-06 Score=97.72 Aligned_cols=169 Identities=19% Similarity=0.278 Sum_probs=95.7
Q ss_pred cceeeeCCCCCChhHHHHHHHHHh---CCeeEEEecccchhc-----ccCcch-------HHHHHHHHHHhhCCCeEEEE
Q 004267 516 KGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTM-----WFGESE-------ANVREIFDKARQSAPCVLFF 580 (764)
Q Consensus 516 ~gill~GppGtGKT~lak~lA~~~---~~~~i~v~~~~l~~~-----~~g~se-------~~i~~~f~~a~~~~p~iifi 580 (764)
..++|+|++||||+++|+++-..+ +.+|+.++|+.+-.. .+|... ..-..+|+.|.. ..+||
T Consensus 228 ~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~~~e~elFG~~~~~~~~~~~~~~g~~e~a~~---GtL~L 304 (520)
T PRK10820 228 APLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVESELFGHAPGAYPNALEGKKGFFEQANG---GSVLL 304 (520)
T ss_pred CCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHHHHHHHhcCCCCCCcCCcccCCCChhhhcCC---CEEEE
Confidence 349999999999999999986654 468999999875321 122111 011124555443 48999
Q ss_pred ecccchhhccCCCCCCCCcchHHHHHHHHHhhcCC-----C----CCCcEEEEecCCCC--CC-----CCccCCCCCccc
Q 004267 581 DELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGM-----S----AKKTVFIIGATNRP--DI-----IDPALLRPGRLD 644 (764)
Q Consensus 581 DEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~-----~----~~~~v~vi~aTn~~--~~-----ld~allrpgRf~ 644 (764)
|||+.+.. .+-..|+..+... . ...++-||+||+.+ +. +.+.|.. |+.
T Consensus 305 deI~~L~~--------------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~ 368 (520)
T PRK10820 305 DEIGEMSP--------------RMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLN 368 (520)
T ss_pred eChhhCCH--------------HHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcC
Confidence 99999743 2234444444321 1 12356788888764 22 3333433 544
Q ss_pred -eEEeecCCCH--HHHHHHHHHHhcc----CCCC-Cccc---HHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q 004267 645 -QLIYIPLPDE--DSRHQIFKACLRK----SPVS-KDVD---LRALAKYTQGFSGADITEICQRACKYAI 703 (764)
Q Consensus 645 -~~i~~~~p~~--~~r~~Il~~~~~~----~~~~-~~~~---l~~la~~~~g~sg~di~~~~~~a~~~a~ 703 (764)
..|.+|+... +....+++.++++ .+.. ..+. +..|..+.-.-+-++|++++..|+..+-
T Consensus 369 ~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~~y~WPGNvreL~nvl~~a~~~~~ 438 (520)
T PRK10820 369 VLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYGWPGNVRQLKNAIYRALTQLE 438 (520)
T ss_pred eeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCC
Confidence 4566665533 3444454555432 2211 1222 3344444333466899999998887653
No 429
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=98.25 E-value=4.5e-06 Score=79.87 Aligned_cols=112 Identities=21% Similarity=0.393 Sum_probs=73.7
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCe--EEEEechhhh----------------------------------
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGPEIM---------------------------------- 279 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~--~i~v~~~~l~---------------------------------- 279 (764)
++.+++++.+.|+||+|+|||||+|.|..+.... -+.+++.++.
T Consensus 22 s~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA 101 (223)
T COG2884 22 SFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVA 101 (223)
T ss_pred eEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhh
Confidence 4567889999999999999999999998875321 1222221110
Q ss_pred ------h--------------hccc------------hhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHH
Q 004267 280 ------S--------------KLAG------------ESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERR 327 (764)
Q Consensus 280 ------~--------------~~~g------------~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~ 327 (764)
+ .++| ...++-|-.+..|.-+.|.+|+-|| +.++++..
T Consensus 102 ~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADE----------PTGNLDp~ 171 (223)
T COG2884 102 LPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADE----------PTGNLDPD 171 (223)
T ss_pred hhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecC----------CCCCCChH
Confidence 0 0000 0112234456677778999999999 67777777
Q ss_pred HHHHHHHHhhcccCCCeEEEEEecCCCCCCC
Q 004267 328 IVSQLLTLMDGLKSRAHVIVIGATNRPNSID 358 (764)
Q Consensus 328 v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld 358 (764)
....++.++..+... +..|+.+|++.+.++
T Consensus 172 ~s~~im~lfeeinr~-GtTVl~ATHd~~lv~ 201 (223)
T COG2884 172 LSWEIMRLFEEINRL-GTTVLMATHDLELVN 201 (223)
T ss_pred HHHHHHHHHHHHhhc-CcEEEEEeccHHHHH
Confidence 888888888888765 445555777655444
No 430
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.25 E-value=2.6e-06 Score=83.44 Aligned_cols=109 Identities=22% Similarity=0.330 Sum_probs=69.0
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCe--EEEEechhhhh-------h---cc---------------chhHH
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGPEIMS-------K---LA---------------GESES 288 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~--~i~v~~~~l~~-------~---~~---------------g~~~~ 288 (764)
++.+.+++.+.|.||+|+|||||++.|++..... -+.+++.++.. . +. =...+
T Consensus 22 ~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~ 101 (173)
T cd03246 22 SFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQ 101 (173)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcCHHH
Confidence 3456788899999999999999999999986321 13333322100 0 00 01123
Q ss_pred HHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCC
Q 004267 289 NLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPN 355 (764)
Q Consensus 289 ~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~ 355 (764)
+-+-.+..+....|.++++||. ...++.....++.+.+..+... +..+|.+|++++
T Consensus 102 ~qrv~la~al~~~p~~lllDEP----------t~~LD~~~~~~l~~~l~~~~~~-~~tii~~sh~~~ 157 (173)
T cd03246 102 RQRLGLARALYGNPRILVLDEP----------NSHLDVEGERALNQAIAALKAA-GATRIVIAHRPE 157 (173)
T ss_pred HHHHHHHHHHhcCCCEEEEECC----------ccccCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHH
Confidence 3456677778889999999993 3444445556666666665433 345666777654
No 431
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.25 E-value=4.3e-06 Score=95.79 Aligned_cols=130 Identities=18% Similarity=0.203 Sum_probs=80.2
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCeEEEE----echhhhhh-----ccchhHHHHHHHHHHHHhcCCeEEEEccccc
Q 004267 242 PKGILLYGPPGSGKTLIARAVANETGAFFFCI----NGPEIMSK-----LAGESESNLRKAFEEAEKNAPSIIFIDEIDS 312 (764)
Q Consensus 242 ~~~vLL~GppGtGKTtLar~la~~l~~~~i~v----~~~~l~~~-----~~g~~~~~l~~vf~~a~~~~p~il~iDEid~ 312 (764)
..+|||+|+||||||++|+++++..+...+.. ++..+... ..|+..-.-+. +. .....+++|||++.
T Consensus 236 ~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~-l~---~A~~Gil~iDEi~~ 311 (509)
T smart00350 236 DINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETREFTLEGGA-LV---LADNGVCCIDEFDK 311 (509)
T ss_pred cceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEccCcceEEecCcc-EE---ecCCCEEEEechhh
Confidence 44799999999999999999999876432221 11111110 00110000000 11 12346999999998
Q ss_pred cCCCCCCCchHHHHHHHHHHHHHhhccc-----------CCCeEEEEEecCCCC-------------CCChhhhccCCcc
Q 004267 313 IAPKREKTHGEVERRIVSQLLTLMDGLK-----------SRAHVIVIGATNRPN-------------SIDPALRRFGRFD 368 (764)
Q Consensus 313 l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-----------~~~~v~vI~atn~~~-------------~ld~al~r~~rf~ 368 (764)
+.+. ....|++.|+.-. -..++.||+++|+.+ .+++++.+ |||
T Consensus 312 l~~~-----------~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFd 378 (509)
T smart00350 312 MDDS-----------DRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILS--RFD 378 (509)
T ss_pred CCHH-----------HHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhC--cee
Confidence 7432 3355666664321 124678999999753 47888887 998
Q ss_pred eEEE-ecCCChHHHHHHHHHH
Q 004267 369 REID-IGVPDEVGRLEVLRIH 388 (764)
Q Consensus 369 ~~i~-i~~p~~~~R~~il~~~ 388 (764)
-.+. ...|+.+.+.+|.+..
T Consensus 379 Li~~~~d~~~~~~d~~i~~~i 399 (509)
T smart00350 379 LLFVVLDEVDEERDRELAKHV 399 (509)
T ss_pred eEEEecCCCChHHHHHHHHHH
Confidence 7654 4788888888887754
No 432
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.25 E-value=5.4e-06 Score=76.85 Aligned_cols=98 Identities=26% Similarity=0.389 Sum_probs=61.4
Q ss_pred cceeeeCCCCCChhHHHHHHHHHh--------CCeeEEEecccchh----------cc----cC--cchHHHHHHHHHHh
Q 004267 516 KGVLFYGPPGCGKTLLAKAIANEC--------QANFISVKGPELLT----------MW----FG--ESEANVREIFDKAR 571 (764)
Q Consensus 516 ~gill~GppGtGKT~lak~lA~~~--------~~~~i~v~~~~l~~----------~~----~g--~se~~i~~~f~~a~ 571 (764)
+.++++||+|+|||++++.++... ..+++.++.+...+ .+ .+ ........+.+...
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~ 84 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALD 84 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHH
Confidence 458999999999999999999986 67777777654321 00 01 12233344445555
Q ss_pred hCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCC
Q 004267 572 QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATN 628 (764)
Q Consensus 572 ~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn 628 (764)
.....+|++||+|.+. . ..+++.|...++ ...-.++++++.+
T Consensus 85 ~~~~~~lviDe~~~l~-~------------~~~l~~l~~l~~--~~~~~vvl~G~~~ 126 (131)
T PF13401_consen 85 RRRVVLLVIDEADHLF-S------------DEFLEFLRSLLN--ESNIKVVLVGTPE 126 (131)
T ss_dssp HCTEEEEEEETTHHHH-T------------HHHHHHHHHHTC--SCBEEEEEEESST
T ss_pred hcCCeEEEEeChHhcC-C------------HHHHHHHHHHHh--CCCCeEEEEEChh
Confidence 5555699999999974 1 456666666666 3333566666654
No 433
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.25 E-value=2.6e-06 Score=98.67 Aligned_cols=53 Identities=30% Similarity=0.528 Sum_probs=42.4
Q ss_pred eeccCccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhC
Q 004267 473 VEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ 540 (764)
Q Consensus 473 ~~~~~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~ 540 (764)
.+.|...|+++.|++++++.|...+.. ..+++|+||||||||++|++++..+.
T Consensus 23 ~~~~~~~~~~vigq~~a~~~L~~~~~~---------------~~~~l~~G~~G~GKttla~~l~~~l~ 75 (637)
T PRK13765 23 IEVPERLIDQVIGQEHAVEVIKKAAKQ---------------RRHVMMIGSPGTGKSMLAKAMAELLP 75 (637)
T ss_pred cccCcccHHHcCChHHHHHHHHHHHHh---------------CCeEEEECCCCCcHHHHHHHHHHHcC
Confidence 456677899999999998877654321 23699999999999999999998754
No 434
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.24 E-value=4e-06 Score=90.88 Aligned_cols=126 Identities=25% Similarity=0.377 Sum_probs=84.1
Q ss_pred CCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHH----hCCeEEEEechhh
Q 004267 203 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANE----TGAFFFCINGPEI 278 (764)
Q Consensus 203 ~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~----l~~~~i~v~~~~l 278 (764)
....+.++.|-+...+++++.+.. + .+.+.+|||+|++||||+.+|++|... ...+|+.+||..+
T Consensus 73 ~~~~~~~LIG~~~~~~~~~eqik~---~--------ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~ 141 (403)
T COG1221 73 KSEALDDLIGESPSLQELREQIKA---Y--------APSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAY 141 (403)
T ss_pred cchhhhhhhccCHHHHHHHHHHHh---h--------CCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHh
Confidence 345677899999888888887764 1 245678999999999999999998643 3568999999877
Q ss_pred hhhccch------------hHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhccc-----C
Q 004267 279 MSKLAGE------------SESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK-----S 341 (764)
Q Consensus 279 ~~~~~g~------------~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-----~ 341 (764)
....... ....-.-+|+.|.. .+||+|||+.+.+. ....|+..++.-. .
T Consensus 142 ~en~~~~eLFG~~kGaftGa~~~k~Glfe~A~G---GtLfLDEI~~LP~~-----------~Q~kLl~~le~g~~~rvG~ 207 (403)
T COG1221 142 SENLQEAELFGHEKGAFTGAQGGKAGLFEQANG---GTLFLDEIHRLPPE-----------GQEKLLRVLEEGEYRRVGG 207 (403)
T ss_pred CcCHHHHHHhccccceeecccCCcCchheecCC---CEEehhhhhhCCHh-----------HHHHHHHHHHcCceEecCC
Confidence 5432110 01111223444433 58999999988643 2356777776521 1
Q ss_pred ----CCeEEEEEecCC
Q 004267 342 ----RAHVIVIGATNR 353 (764)
Q Consensus 342 ----~~~v~vI~atn~ 353 (764)
...|.+|+||+.
T Consensus 208 ~~~~~~dVRli~AT~~ 223 (403)
T COG1221 208 SQPRPVDVRLICATTE 223 (403)
T ss_pred CCCcCCCceeeecccc
Confidence 236788888874
No 435
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=98.24 E-value=3.6e-06 Score=82.78 Aligned_cols=110 Identities=20% Similarity=0.256 Sum_probs=68.7
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCe--EEEEechhhhh------h---ccc------------------hh
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGPEIMS------K---LAG------------------ES 286 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~--~i~v~~~~l~~------~---~~g------------------~~ 286 (764)
++.+.+++.+.|.||+|+|||||++.|++..... -+.+++.++.. . +.. ..
T Consensus 22 ~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~ 101 (178)
T cd03247 22 SLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSG 101 (178)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCH
Confidence 4567889999999999999999999999986421 23344322110 0 000 01
Q ss_pred HHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCC
Q 004267 287 ESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 357 (764)
Q Consensus 287 ~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~l 357 (764)
.++-+-.+..+....|.++++||.. ..++......+.+.+..+.. ...+|.+|++++.+
T Consensus 102 G~~qrv~laral~~~p~~lllDEP~----------~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~~~~ 160 (178)
T cd03247 102 GERQRLALARILLQDAPIVLLDEPT----------VGLDPITERQLLSLIFEVLK--DKTLIWITHHLTGI 160 (178)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCc----------ccCCHHHHHHHHHHHHHHcC--CCEEEEEecCHHHH
Confidence 2344556777778899999999943 33334444556666655533 34555677776544
No 436
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.24 E-value=5.9e-06 Score=88.75 Aligned_cols=103 Identities=21% Similarity=0.381 Sum_probs=63.1
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHh---CCeEEEEechhhhhhccch---hHHHHHHHHHHHHhcCCeEEEEccccccCC
Q 004267 242 PKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGE---SESNLRKAFEEAEKNAPSIIFIDEIDSIAP 315 (764)
Q Consensus 242 ~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~~~g~---~~~~l~~vf~~a~~~~p~il~iDEid~l~~ 315 (764)
..+++|+||+|||||+|+.++|.++ +..++.++..++....... ........++... ...+|+|||+.....
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~--~~DLLIIDDlG~e~~ 260 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLI--NCDLLIIDDLGTEKI 260 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhc--cCCEEEEeccCCCCC
Confidence 4789999999999999999999986 6677888887776543211 0011111233332 347999999876532
Q ss_pred CCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecC-CCCC
Q 004267 316 KREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATN-RPNS 356 (764)
Q Consensus 316 ~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn-~~~~ 356 (764)
+ ......|..+++.......-+|| +|| .+..
T Consensus 261 t---------~~~~~~Lf~iin~R~~~~k~tIi-TSNl~~~e 292 (329)
T PRK06835 261 T---------EFSKSELFNLINKRLLRQKKMII-STNLSLEE 292 (329)
T ss_pred C---------HHHHHHHHHHHHHHHHCCCCEEE-ECCCCHHH
Confidence 1 12335566666654433333444 555 4433
No 437
>PRK12377 putative replication protein; Provisional
Probab=98.24 E-value=6.9e-06 Score=84.59 Aligned_cols=70 Identities=26% Similarity=0.441 Sum_probs=47.6
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHh---CCeEEEEechhhhhhccchhH--HHHHHHHHHHHhcCCeEEEEcccccc
Q 004267 242 PKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGESE--SNLRKAFEEAEKNAPSIIFIDEIDSI 313 (764)
Q Consensus 242 ~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~~~g~~~--~~l~~vf~~a~~~~p~il~iDEid~l 313 (764)
..+++|+||||||||+|+.+|++.+ +..++.++.+++......... .....+++.. ....+|+|||+...
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~ 175 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQ 175 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCC
Confidence 4689999999999999999999987 455677777777653321110 0112233333 45679999998654
No 438
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.23 E-value=7.8e-07 Score=87.26 Aligned_cols=70 Identities=31% Similarity=0.550 Sum_probs=46.9
Q ss_pred CCcceeeeCCCCCChhHHHHHHHHHh---CCeeEEEecccchhcccCc-chHHHHHHHHHHhhCCCeEEEEecccc
Q 004267 514 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGE-SEANVREIFDKARQSAPCVLFFDELDS 585 (764)
Q Consensus 514 ~~~gill~GppGtGKT~lak~lA~~~---~~~~i~v~~~~l~~~~~g~-se~~i~~~f~~a~~~~p~iifiDEid~ 585 (764)
...|++|+||||||||+||.+++.++ +.....++.++|+...-.. ........++..... .+|+|||+..
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~~--dlLilDDlG~ 119 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLKRV--DLLILDDLGY 119 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHTS--SCEEEETCTS
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccccc--cEecccccce
Confidence 34679999999999999999999864 6778888888887543211 112233445544433 5999999865
No 439
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.23 E-value=8.8e-06 Score=84.47 Aligned_cols=72 Identities=31% Similarity=0.532 Sum_probs=50.0
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHh---CCeEEEEechhhhhhccchhHH-HHHHHHHHHHhcCCeEEEEcccccc
Q 004267 241 PPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGESES-NLRKAFEEAEKNAPSIIFIDEIDSI 313 (764)
Q Consensus 241 ~~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~~~g~~~~-~l~~vf~~a~~~~p~il~iDEid~l 313 (764)
.+.+++|+||||+|||+||-+|+.++ |..++.+..++++......... ....-+... -....+|+|||+...
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~-l~~~dlLIiDDlG~~ 179 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRE-LKKVDLLIIDDIGYE 179 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHH-hhcCCEEEEecccCc
Confidence 57899999999999999999999887 6778888888887654322111 111111221 123469999998754
No 440
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.23 E-value=1.7e-05 Score=76.58 Aligned_cols=132 Identities=25% Similarity=0.368 Sum_probs=83.4
Q ss_pred ChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCC-----------------------
Q 004267 212 GVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA----------------------- 268 (764)
Q Consensus 212 Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~----------------------- 268 (764)
|.+..++.|..++..- .-+..+||+||+|+||+++|+++|..+-.
T Consensus 1 gq~~~~~~L~~~~~~~------------~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~ 68 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG------------RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHP 68 (162)
T ss_dssp S-HHHHHHHHHHHHCT------------C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CT
T ss_pred CcHHHHHHHHHHHHcC------------CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCc
Confidence 5677777777776541 23557999999999999999999988632
Q ss_pred eEEEEechhhhhhccchhHHHHHHHHHHHH----hcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCe
Q 004267 269 FFFCINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAH 344 (764)
Q Consensus 269 ~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~ 344 (764)
.++.++...... .-.-..++.+.+.+. ....-|++|||+|.+. ....+.|+..|+.... +
T Consensus 69 d~~~~~~~~~~~---~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~-----------~~a~NaLLK~LEepp~--~ 132 (162)
T PF13177_consen 69 DFIIIKPDKKKK---SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLT-----------EEAQNALLKTLEEPPE--N 132 (162)
T ss_dssp TEEEEETTTSSS---SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS------------HHHHHHHHHHHHSTTT--T
T ss_pred ceEEEecccccc---hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhh-----------HHHHHHHHHHhcCCCC--C
Confidence 123333221100 012345666555433 2345799999999874 3345778888887654 6
Q ss_pred EEEEEecCCCCCCChhhhccCCcceEEEec
Q 004267 345 VIVIGATNRPNSIDPALRRFGRFDREIDIG 374 (764)
Q Consensus 345 v~vI~atn~~~~ld~al~r~~rf~~~i~i~ 374 (764)
+.+|.+|+.++.+-|.+++ |. ..+.++
T Consensus 133 ~~fiL~t~~~~~il~TI~S--Rc-~~i~~~ 159 (162)
T PF13177_consen 133 TYFILITNNPSKILPTIRS--RC-QVIRFR 159 (162)
T ss_dssp EEEEEEES-GGGS-HHHHT--TS-EEEEE-
T ss_pred EEEEEEECChHHChHHHHh--hc-eEEecC
Confidence 6777788889999999988 66 334444
No 441
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.22 E-value=3.4e-06 Score=81.80 Aligned_cols=97 Identities=31% Similarity=0.508 Sum_probs=63.0
Q ss_pred cceeeeCCCCCChhHHHHHHHHHh---CCeeEEEecccchhc-----ccCcch-------HHHHHHHHHHhhCCCeEEEE
Q 004267 516 KGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTM-----WFGESE-------ANVREIFDKARQSAPCVLFF 580 (764)
Q Consensus 516 ~gill~GppGtGKT~lak~lA~~~---~~~~i~v~~~~l~~~-----~~g~se-------~~i~~~f~~a~~~~p~iifi 580 (764)
..+||+|++||||+++|+++-..+ +.+|+.|+++.+-.. .+|... ..-.-+|+.|... .|||
T Consensus 23 ~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~~G---tL~L 99 (168)
T PF00158_consen 23 LPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHEKGAFTGARSDKKGLLEQANGG---TLFL 99 (168)
T ss_dssp S-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBCSSSSTTTSSEBEHHHHHTTTS---EEEE
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhccccccccccccccCCceeeccce---EEee
Confidence 569999999999999999998865 579999999765321 223211 1123577777666 9999
Q ss_pred ecccchhhccCCCCCCCCcchHHHHHHHHHhhcCC-----CC----CCcEEEEecCCC
Q 004267 581 DELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGM-----SA----KKTVFIIGATNR 629 (764)
Q Consensus 581 DEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~-----~~----~~~v~vi~aTn~ 629 (764)
|||+.|.. .+-..|+..|+.- .. .-++-||+|||.
T Consensus 100 d~I~~L~~--------------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~ 143 (168)
T PF00158_consen 100 DEIEDLPP--------------ELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSK 143 (168)
T ss_dssp ETGGGS-H--------------HHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS
T ss_pred cchhhhHH--------------HHHHHHHHHHhhchhccccccccccccceEEeecCc
Confidence 99999854 3344455554421 11 236888999985
No 442
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.22 E-value=2.5e-06 Score=86.89 Aligned_cols=110 Identities=20% Similarity=0.281 Sum_probs=76.2
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCe--EEEEechhhhh-------------------------hccch--h
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGPEIMS-------------------------KLAGE--S 286 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~--~i~v~~~~l~~-------------------------~~~g~--~ 286 (764)
++.+..++.+.|+|.+||||||++|.|.+..... -+..+|.++.. +|..+ .
T Consensus 33 sf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSG 112 (268)
T COG4608 33 SFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSG 112 (268)
T ss_pred eEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCc
Confidence 3456889999999999999999999999876532 24444433211 11111 1
Q ss_pred HHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCC
Q 004267 287 ESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPN 355 (764)
Q Consensus 287 ~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~ 355 (764)
.++-|-.+..|..-.|.+++.||..+ ..+-.+..|++++|..++...++..+..|++..
T Consensus 113 GQrQRi~IARALal~P~liV~DEpvS----------aLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~ 171 (268)
T COG4608 113 GQRQRIGIARALALNPKLIVADEPVS----------ALDVSVQAQILNLLKDLQEELGLTYLFISHDLS 171 (268)
T ss_pred hhhhhHHHHHHHhhCCcEEEecCchh----------hcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHH
Confidence 22335566778888999999999543 345567788889988888777777777777653
No 443
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.22 E-value=3e-06 Score=93.44 Aligned_cols=197 Identities=24% Similarity=0.348 Sum_probs=112.3
Q ss_pred CccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHh---CCeeEEEecccc--
Q 004267 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPEL-- 551 (764)
Q Consensus 477 ~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~---~~~~i~v~~~~l-- 551 (764)
..+|++|.|.......+.+.+.. .-.....+|+.|.+||||-.+|+++-+.+ +.|||.++|..+
T Consensus 241 ~y~f~~Iig~S~~m~~~~~~akr-----------~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe 309 (560)
T COG3829 241 KYTFDDIIGESPAMLRVLELAKR-----------IAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPE 309 (560)
T ss_pred ccchhhhccCCHHHHHHHHHHHh-----------hcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCH
Confidence 35678888877665554433221 12334569999999999999999998875 679999999644
Q ss_pred -------hh----cccCcchHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcC-----C
Q 004267 552 -------LT----MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDG-----M 615 (764)
Q Consensus 552 -------~~----~~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~-----~ 615 (764)
++ -|.|....--.-+|+.|... -||+|||..+.- .+-..||..|.. +
T Consensus 310 ~LlESELFGye~GAFTGA~~~GK~GlfE~A~gG---TLFLDEIgempl--------------~LQaKLLRVLQEkei~rv 372 (560)
T COG3829 310 TLLESELFGYEKGAFTGASKGGKPGLFELANGG---TLFLDEIGEMPL--------------PLQAKLLRVLQEKEIERV 372 (560)
T ss_pred HHHHHHHhCcCCccccccccCCCCcceeeccCC---eEEehhhccCCH--------------HHHHHHHHHHhhceEEec
Confidence 22 12233222234577777666 799999987632 234445554432 1
Q ss_pred CC----CCcEEEEecCCCC--CCCCccCCCCC---ccceEEeecCCCH----HHHHHHHHHHhc----cCCCC----Ccc
Q 004267 616 SA----KKTVFIIGATNRP--DIIDPALLRPG---RLDQLIYIPLPDE----DSRHQIFKACLR----KSPVS----KDV 674 (764)
Q Consensus 616 ~~----~~~v~vi~aTn~~--~~ld~allrpg---Rf~~~i~~~~p~~----~~r~~Il~~~~~----~~~~~----~~~ 674 (764)
-+ .-+|=||+|||+. +.+...-+|.. |++ ++.+..|-. +....+...++. +.+.. .+.
T Consensus 373 G~t~~~~vDVRIIAATN~nL~~~i~~G~FReDLYYRLN-V~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~ 451 (560)
T COG3829 373 GGTKPIPVDVRIIAATNRNLEKMIAEGTFREDLYYRLN-VIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPD 451 (560)
T ss_pred CCCCceeeEEEEEeccCcCHHHHHhcCcchhhheeeec-eeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHH
Confidence 11 2368899999973 22222111110 332 333333433 223333333333 22211 122
Q ss_pred cHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q 004267 675 DLRALAKYTQGFSGADITEICQRACKYA 702 (764)
Q Consensus 675 ~l~~la~~~~g~sg~di~~~~~~a~~~a 702 (764)
-+..|.++.---+-++|+|++..|...+
T Consensus 452 a~~~L~~y~WPGNVRELeNviER~v~~~ 479 (560)
T COG3829 452 ALALLLRYDWPGNVRELENVIERAVNLV 479 (560)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHHhcc
Confidence 2444555443347799999999988644
No 444
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.22 E-value=5.9e-06 Score=95.98 Aligned_cols=132 Identities=18% Similarity=0.299 Sum_probs=85.2
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCC--eEEEEechhhhhhccchhHHHHHHHHHH---------HHhcCCeEEEEcccc
Q 004267 243 KGILLYGPPGSGKTLIARAVANETGA--FFFCINGPEIMSKLAGESESNLRKAFEE---------AEKNAPSIIFIDEID 311 (764)
Q Consensus 243 ~~vLL~GppGtGKTtLar~la~~l~~--~~i~v~~~~l~~~~~g~~~~~l~~vf~~---------a~~~~p~il~iDEid 311 (764)
.+|||.|+||||||+++++++..++. +|+.+..........|.. .+...+.. .......+||+||++
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~i--dl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~ 94 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGI--DVEESLAGGQRVTQPGLLDEAPRGVLYVDMAN 94 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccch--hhhhhhhcCcccCCCCCeeeCCCCcEeccchh
Confidence 47999999999999999999998764 477776432222233321 01110100 001223599999999
Q ss_pred ccCCCCCCCchHHHHHHHHHHHHHhhccc-----------CCCeEEEEEecCCCC---CCChhhhccCCcceEEEec-CC
Q 004267 312 SIAPKREKTHGEVERRIVSQLLTLMDGLK-----------SRAHVIVIGATNRPN---SIDPALRRFGRFDREIDIG-VP 376 (764)
Q Consensus 312 ~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-----------~~~~v~vI~atn~~~---~ld~al~r~~rf~~~i~i~-~p 376 (764)
.+.+ .+...|++.|+.-. ....+.||+++|..+ .+.++|.. ||...+.+. .|
T Consensus 95 rl~~-----------~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~~~~ 161 (589)
T TIGR02031 95 LLDD-----------GLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSLEDVA 161 (589)
T ss_pred hCCH-----------HHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeecCCCC
Confidence 7743 34567777775321 123678888888764 67788877 888877765 45
Q ss_pred ChHHHHHHHHHHh
Q 004267 377 DEVGRLEVLRIHT 389 (764)
Q Consensus 377 ~~~~R~~il~~~~ 389 (764)
...+|.+|++...
T Consensus 162 ~~~er~eil~~~~ 174 (589)
T TIGR02031 162 SQDLRVEIVRRER 174 (589)
T ss_pred CHHHHHHHHHHHH
Confidence 6677888887644
No 445
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.21 E-value=1.9e-06 Score=82.90 Aligned_cols=112 Identities=28% Similarity=0.361 Sum_probs=68.4
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCe--EEEEechhhhh-------hccc-----hhHHHHHHHHHHHHhcC
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGPEIMS-------KLAG-----ESESNLRKAFEEAEKNA 301 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~--~i~v~~~~l~~-------~~~g-----~~~~~l~~vf~~a~~~~ 301 (764)
++.+.+++.++|.||+|+|||||+++|++.+... -+.+++..+.. ...+ ...+.-+..+..+....
T Consensus 19 ~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~ 98 (157)
T cd00267 19 SLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLN 98 (157)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcC
Confidence 3456788999999999999999999999987532 24444432211 0000 11233444566677778
Q ss_pred CeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCC
Q 004267 302 PSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSID 358 (764)
Q Consensus 302 p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld 358 (764)
|.++++||...- ++......+.+.+..+... ...++.+|++++.+.
T Consensus 99 ~~i~ilDEp~~~----------lD~~~~~~l~~~l~~~~~~-~~tii~~sh~~~~~~ 144 (157)
T cd00267 99 PDLLLLDEPTSG----------LDPASRERLLELLRELAEE-GRTVIIVTHDPELAE 144 (157)
T ss_pred CCEEEEeCCCcC----------CCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHH
Confidence 999999995432 3333344555555554433 235556777765443
No 446
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.21 E-value=2.4e-06 Score=88.64 Aligned_cols=68 Identities=29% Similarity=0.472 Sum_probs=48.2
Q ss_pred CCcceeeeCCCCCChhHHHHHHHHHh---CCeeEEEecccchhccc-----CcchHHHHHHHHHHhhCCCeEEEEecccc
Q 004267 514 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWF-----GESEANVREIFDKARQSAPCVLFFDELDS 585 (764)
Q Consensus 514 ~~~gill~GppGtGKT~lak~lA~~~---~~~~i~v~~~~l~~~~~-----g~se~~i~~~f~~a~~~~p~iifiDEid~ 585 (764)
...+++|+||||+|||+||-|++.++ +...+.+..++++...- |..+..+... .. ...+|+|||+..
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~---l~--~~dlLIiDDlG~ 178 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRE---LK--KVDLLIIDDIGY 178 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHH---hh--cCCEEEEecccC
Confidence 45789999999999999999999975 66788888888875421 1222222221 22 235999999977
Q ss_pred h
Q 004267 586 I 586 (764)
Q Consensus 586 l 586 (764)
.
T Consensus 179 ~ 179 (254)
T COG1484 179 E 179 (254)
T ss_pred c
Confidence 4
No 447
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.20 E-value=4.7e-06 Score=81.45 Aligned_cols=109 Identities=16% Similarity=0.197 Sum_probs=65.8
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeE-------------EEEechhhhh----------hccc--hhHHHH
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAFF-------------FCINGPEIMS----------KLAG--ESESNL 290 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~-------------i~v~~~~l~~----------~~~g--~~~~~l 290 (764)
++.+.++..+.|.||+|||||||++++....+... ..+.-.+... .... ...++-
T Consensus 15 sl~i~~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~LSgGq~q 94 (176)
T cd03238 15 DVSIPLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGGELQ 94 (176)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcCcCCHHHHH
Confidence 35678889999999999999999999974322211 1110000111 0000 112344
Q ss_pred HHHHHHHHhcC--CeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCC
Q 004267 291 RKAFEEAEKNA--PSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPN 355 (764)
Q Consensus 291 ~~vf~~a~~~~--p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~ 355 (764)
+-.+..+.... |.++++||. ...++......+.+.+..+... +..||.+|++++
T Consensus 95 rl~laral~~~~~p~llLlDEP----------t~~LD~~~~~~l~~~l~~~~~~-g~tvIivSH~~~ 150 (176)
T cd03238 95 RVKLASELFSEPPGTLFILDEP----------STGLHQQDINQLLEVIKGLIDL-GNTVILIEHNLD 150 (176)
T ss_pred HHHHHHHHhhCCCCCEEEEeCC----------cccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHH
Confidence 55667777788 999999994 3444455556666666665433 445666788764
No 448
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.19 E-value=1.2e-05 Score=86.59 Aligned_cols=133 Identities=15% Similarity=0.248 Sum_probs=90.0
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCe-------------------------EEEEechhhhh--------------
Q 004267 240 KPPKGILLYGPPGSGKTLIARAVANETGAF-------------------------FFCINGPEIMS-------------- 280 (764)
Q Consensus 240 ~~~~~vLL~GppGtGKTtLar~la~~l~~~-------------------------~i~v~~~~l~~-------------- 280 (764)
.-+..+||+||+|+||+++|+.+|+.+.+. ++.+.......
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 345689999999999999999999887432 11121100000
Q ss_pred hccc---------hhHHHHHHHHHHHH----hcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEE
Q 004267 281 KLAG---------ESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIV 347 (764)
Q Consensus 281 ~~~g---------~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~v 347 (764)
...| -.-..++.+.+.+. ...-.|++||++|.+.. ...+.|+..++.- ..++++
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~-----------~AaNaLLKtLEEP--p~~t~f 165 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNV-----------AAANALLKTLEEP--PPGTVF 165 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCH-----------HHHHHHHHHhcCC--CcCcEE
Confidence 0000 11235565555432 23345999999998743 2447788888863 457788
Q ss_pred EEecCCCCCCChhhhccCCcceEEEecCCChHHHHHHHHHH
Q 004267 348 IGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIH 388 (764)
Q Consensus 348 I~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~ 388 (764)
|.+|++++.+.|.+++ |. ..+.++.|+.++..+.|...
T Consensus 166 iL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 166 LLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred EEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 8899999999999998 77 67899999998888877643
No 449
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.19 E-value=4e-05 Score=88.06 Aligned_cols=150 Identities=26% Similarity=0.366 Sum_probs=91.4
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCeEEEEechhhhhh-
Q 004267 206 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSK- 281 (764)
Q Consensus 206 ~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~- 281 (764)
.+.++.|....++++.+.+..- ...+..|||+|++||||+++|++|-... +.+|+.++|..+...
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~-----------a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~ 253 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVV-----------AASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESL 253 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHH
Confidence 5667889888888887777641 1345689999999999999999998775 468999999765321
Q ss_pred ----ccchhHH-------HHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhccc---------C
Q 004267 282 ----LAGESES-------NLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK---------S 341 (764)
Q Consensus 282 ----~~g~~~~-------~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~---------~ 341 (764)
..|.... .-...|+.+ ....||||||+.+.+. +...|+..++.-. .
T Consensus 254 ~e~~lfG~~~g~~~ga~~~~~g~~~~a---~gGtL~ldeI~~L~~~-----------~Q~~Ll~~l~~~~~~~~g~~~~~ 319 (509)
T PRK05022 254 AESELFGHVKGAFTGAISNRSGKFELA---DGGTLFLDEIGELPLA-----------LQAKLLRVLQYGEIQRVGSDRSL 319 (509)
T ss_pred HHHHhcCccccccCCCcccCCcchhhc---CCCEEEecChhhCCHH-----------HHHHHHHHHhcCCEeeCCCCcce
Confidence 1110000 000123332 3468999999988532 3345566554321 1
Q ss_pred CCeEEEEEecCCCC-------CCChhhhccCCcceEEEecCCChHHHHH
Q 004267 342 RAHVIVIGATNRPN-------SIDPALRRFGRFDREIDIGVPDEVGRLE 383 (764)
Q Consensus 342 ~~~v~vI~atn~~~-------~ld~al~r~~rf~~~i~i~~p~~~~R~~ 383 (764)
...+-+|++|+..- .+.+.|-. |+. .+.+.+|...+|.+
T Consensus 320 ~~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl~-~~~i~lPpLreR~e 365 (509)
T PRK05022 320 RVDVRVIAATNRDLREEVRAGRFRADLYH--RLS-VFPLSVPPLRERGD 365 (509)
T ss_pred ecceEEEEecCCCHHHHHHcCCccHHHHh--ccc-ccEeeCCCchhchh
Confidence 13577888887641 12222222 332 35566777666654
No 450
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.18 E-value=4e-06 Score=86.09 Aligned_cols=69 Identities=28% Similarity=0.460 Sum_probs=49.5
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh---CCeEEEEechhhhhhccchh---HHHHHHHHHHHHhcCCeEEEEcccccc
Q 004267 243 KGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGES---ESNLRKAFEEAEKNAPSIIFIDEIDSI 313 (764)
Q Consensus 243 ~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~~~g~~---~~~l~~vf~~a~~~~p~il~iDEid~l 313 (764)
.+++|+|+||||||+|+.+|+..+ +..++.++..++........ ......+++... .+++|+|||++..
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~ 174 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQ 174 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCC
Confidence 589999999999999999999987 56777788777765433211 112233444433 4689999999865
No 451
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.18 E-value=2.2e-06 Score=84.09 Aligned_cols=101 Identities=23% Similarity=0.440 Sum_probs=59.2
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh---CCeEEEEechhhhhhccchh-HHHHHHHHHHHHhcCCeEEEEccccccCC
Q 004267 240 KPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGES-ESNLRKAFEEAEKNAPSIIFIDEIDSIAP 315 (764)
Q Consensus 240 ~~~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~~~g~~-~~~l~~vf~~a~~~~p~il~iDEid~l~~ 315 (764)
..+.+++|+||+|||||+||.+++.++ +..+..++.++++....... .......++... .+.+|+|||+....
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~~~- 121 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGYEP- 121 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTSS--
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEecccccceee-
Confidence 457899999999999999999998875 66778888888765433210 112233444443 34799999985321
Q ss_pred CCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCC
Q 004267 316 KREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNR 353 (764)
Q Consensus 316 ~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~ 353 (764)
........|..+++.-..+.. + |.|||.
T Consensus 122 --------~~~~~~~~l~~ii~~R~~~~~-t-IiTSN~ 149 (178)
T PF01695_consen 122 --------LSEWEAELLFEIIDERYERKP-T-IITSNL 149 (178)
T ss_dssp ----------HHHHHCTHHHHHHHHHT-E-E-EEEESS
T ss_pred --------ecccccccchhhhhHhhcccC-e-EeeCCC
Confidence 112233455666655433332 3 337774
No 452
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.18 E-value=2.9e-06 Score=83.12 Aligned_cols=111 Identities=18% Similarity=0.229 Sum_probs=68.5
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCe--EEEEechhhhh-----------------hccc---------hhH
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGPEIMS-----------------KLAG---------ESE 287 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~--~i~v~~~~l~~-----------------~~~g---------~~~ 287 (764)
++.+.+++.+.|.||+|+|||||++.|++..... -+.+++.++.. .+.+ ...
T Consensus 20 ~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G 99 (173)
T cd03230 20 SLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGG 99 (173)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhhcCHH
Confidence 3456788999999999999999999999975321 12222211100 0001 112
Q ss_pred HHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCC
Q 004267 288 SNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 357 (764)
Q Consensus 288 ~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~l 357 (764)
++-+-.+..+....|.++++||.. ..++......+.+++..+..+ +..+|.+|++++.+
T Consensus 100 ~~qrv~laral~~~p~illlDEPt----------~~LD~~~~~~l~~~l~~~~~~-g~tiii~th~~~~~ 158 (173)
T cd03230 100 MKQRLALAQALLHDPELLILDEPT----------SGLDPESRREFWELLRELKKE-GKTILLSSHILEEA 158 (173)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCc----------cCCCHHHHHHHHHHHHHHHHC-CCEEEEECCCHHHH
Confidence 234556777888899999999943 334444556666666665444 34556677775433
No 453
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.18 E-value=2.3e-06 Score=84.22 Aligned_cols=112 Identities=20% Similarity=0.331 Sum_probs=69.8
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCe--EEEEechhhh---------h-----------hccc---------
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGPEIM---------S-----------KLAG--------- 284 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~--~i~v~~~~l~---------~-----------~~~g--------- 284 (764)
++.+.++..+.|.||+|+|||||+++|++.+... -+.+++.++. . .+.+
T Consensus 20 ~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~ 99 (178)
T cd03229 20 SLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIAL 99 (178)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheee
Confidence 3456788999999999999999999999875421 1223221110 0 0000
Q ss_pred --hhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCC
Q 004267 285 --ESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 357 (764)
Q Consensus 285 --~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~l 357 (764)
...++-+..+..+....|.++++||- ...++......+.+++..+.......+|.+|++++.+
T Consensus 100 ~lS~G~~qr~~la~al~~~p~llilDEP----------~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~ 164 (178)
T cd03229 100 GLSGGQQQRVALARALAMDPDVLLLDEP----------TSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEA 164 (178)
T ss_pred cCCHHHHHHHHHHHHHHCCCCEEEEeCC----------cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 11234455677778889999999993 3444455556666766666544234556677775543
No 454
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.18 E-value=6.5e-05 Score=80.41 Aligned_cols=127 Identities=17% Similarity=0.259 Sum_probs=87.3
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCe------------------------EEEEechhhhhhccchhHHHHHHHHHHH
Q 004267 242 PKGILLYGPPGSGKTLIARAVANETGAF------------------------FFCINGPEIMSKLAGESESNLRKAFEEA 297 (764)
Q Consensus 242 ~~~vLL~GppGtGKTtLar~la~~l~~~------------------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a 297 (764)
+..+||+||+|+||+++|+.+|+.+.+. ++.+...+ ++. -.-..+|.+.+.+
T Consensus 24 ~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--~~~--I~id~iR~l~~~~ 99 (325)
T PRK06871 24 HHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPID--NKD--IGVDQVREINEKV 99 (325)
T ss_pred ceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcccc--CCC--CCHHHHHHHHHHH
Confidence 4579999999999999999999887321 12221100 010 1234566655544
Q ss_pred H----hcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCChhhhccCCcceEEEe
Q 004267 298 E----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDI 373 (764)
Q Consensus 298 ~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~rf~~~i~i 373 (764)
. ...-.|++||++|.+.. ...+.|+..++.- ..++++|.+|+.++.+-|.+++ |. ..+.+
T Consensus 100 ~~~~~~g~~KV~iI~~a~~m~~-----------~AaNaLLKtLEEP--p~~~~fiL~t~~~~~llpTI~S--RC-~~~~~ 163 (325)
T PRK06871 100 SQHAQQGGNKVVYIQGAERLTE-----------AAANALLKTLEEP--RPNTYFLLQADLSAALLPTIYS--RC-QTWLI 163 (325)
T ss_pred hhccccCCceEEEEechhhhCH-----------HHHHHHHHHhcCC--CCCeEEEEEECChHhCchHHHh--hc-eEEeC
Confidence 3 23446999999998742 3447788888774 3467777788999999999988 66 56789
Q ss_pred cCCChHHHHHHHHHH
Q 004267 374 GVPDEVGRLEVLRIH 388 (764)
Q Consensus 374 ~~p~~~~R~~il~~~ 388 (764)
..|+.++-.+.|...
T Consensus 164 ~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 164 HPPEEQQALDWLQAQ 178 (325)
T ss_pred CCCCHHHHHHHHHHH
Confidence 999888777777644
No 455
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.17 E-value=5.8e-06 Score=79.39 Aligned_cols=110 Identities=25% Similarity=0.364 Sum_probs=60.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHh---CCeEEEEechhhhhhc----------------------c--chhHHHHHHHHHHH
Q 004267 245 ILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKL----------------------A--GESESNLRKAFEEA 297 (764)
Q Consensus 245 vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~~----------------------~--g~~~~~l~~vf~~a 297 (764)
++|+||||+|||+++..++... +..++.++........ . .............+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 7899999999999999998886 3455555443221100 0 01111222344556
Q ss_pred HhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCC
Q 004267 298 EKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPN 355 (764)
Q Consensus 298 ~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~ 355 (764)
....|.+++|||+..+.+......+..+......+..++.... +.++.+|.+++...
T Consensus 82 ~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~vv~~~~~~~ 138 (165)
T cd01120 82 ERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERAR-KGGVTVIFTLQVPS 138 (165)
T ss_pred hCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHh-cCCceEEEEEecCC
Confidence 6778999999999987654221000111122233333333332 23556666666544
No 456
>PRK06851 hypothetical protein; Provisional
Probab=98.17 E-value=6.1e-05 Score=81.52 Aligned_cols=34 Identities=24% Similarity=0.328 Sum_probs=26.3
Q ss_pred cceeeeCCCCCChhHHHHHHHHHh---CCeeEEEecc
Q 004267 516 KGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGP 549 (764)
Q Consensus 516 ~gill~GppGtGKT~lak~lA~~~---~~~~i~v~~~ 549 (764)
+-++|.|+||||||||++.++.++ |.......++
T Consensus 215 ~~~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~~hC~ 251 (367)
T PRK06851 215 NRYFLKGRPGTGKSTMLKKIAKAAEERGFDVEVYHCG 251 (367)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 449999999999999999999876 4444444443
No 457
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.17 E-value=3.6e-06 Score=82.04 Aligned_cols=31 Identities=26% Similarity=0.480 Sum_probs=26.3
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANET 266 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l 266 (764)
++.++...-..|.||+||||||++|++....
T Consensus 27 ~l~i~~~~VTAlIGPSGcGKST~LR~lNRmn 57 (253)
T COG1117 27 NLDIPKNKVTALIGPSGCGKSTLLRCLNRMN 57 (253)
T ss_pred ceeccCCceEEEECCCCcCHHHHHHHHHhhc
Confidence 3456777889999999999999999997654
No 458
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=98.16 E-value=4.7e-06 Score=83.20 Aligned_cols=64 Identities=19% Similarity=0.271 Sum_probs=41.6
Q ss_pred HHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCC-CeEEEEEecCCCCCCChhhhc
Q 004267 290 LRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSR-AHVIVIGATNRPNSIDPALRR 363 (764)
Q Consensus 290 l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~-~~v~vI~atn~~~~ld~al~r 363 (764)
-+.+|..|.-..|.+|++||-- ..+|-.....|++.+..+... +...++..|+..+++.+.+.+
T Consensus 178 rrvLiaRALv~~P~LLiLDEP~----------~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th 242 (257)
T COG1119 178 RRVLIARALVKDPELLILDEPA----------QGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTH 242 (257)
T ss_pred HHHHHHHHHhcCCCEEEecCcc----------ccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccce
Confidence 3566778888899999999933 333333445666666555432 234455568999998885544
No 459
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.16 E-value=5.4e-05 Score=90.39 Aligned_cols=150 Identities=26% Similarity=0.388 Sum_probs=91.1
Q ss_pred CCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCeEEEEechhhhhh
Q 004267 205 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSK 281 (764)
Q Consensus 205 ~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~ 281 (764)
..|+++.|....++.+.+.+..- ......|||+|++|||||++|++|.... +.+|+.++|..+...
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~-----------a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~ 441 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMV-----------AQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 441 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChh
Confidence 35678888888888877666531 1235689999999999999999998764 468999998765321
Q ss_pred -----ccch--------hHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhccc--------
Q 004267 282 -----LAGE--------SESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK-------- 340 (764)
Q Consensus 282 -----~~g~--------~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-------- 340 (764)
..|. .....+ .|+. ....+||||||+.+.. .+...|+..++.-.
T Consensus 442 ~~~~~lfg~~~~~~~g~~~~~~g-~le~---a~~GtL~Ldei~~L~~-----------~~Q~~L~~~l~~~~~~~~g~~~ 506 (686)
T PRK15429 442 LLESDLFGHERGAFTGASAQRIG-RFEL---ADKSSLFLDEVGDMPL-----------ELQPKLLRVLQEQEFERLGSNK 506 (686)
T ss_pred HhhhhhcCcccccccccccchhh-HHHh---cCCCeEEEechhhCCH-----------HHHHHHHHHHHhCCEEeCCCCC
Confidence 1111 111122 2333 2346999999998742 23355666654321
Q ss_pred -CCCeEEEEEecCCCC-------CCChhhhccCCcceEEEecCCChHHHHH
Q 004267 341 -SRAHVIVIGATNRPN-------SIDPALRRFGRFDREIDIGVPDEVGRLE 383 (764)
Q Consensus 341 -~~~~v~vI~atn~~~-------~ld~al~r~~rf~~~i~i~~p~~~~R~~ 383 (764)
...++-+|++|+..- .+...|-. |+ ..+.+..|...+|.+
T Consensus 507 ~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~--~l-~~~~i~lPpLreR~~ 554 (686)
T PRK15429 507 IIQTDVRLIAATNRDLKKMVADREFRSDLYY--RL-NVFPIHLPPLRERPE 554 (686)
T ss_pred cccceEEEEEeCCCCHHHHHHcCcccHHHHh--cc-CeeEEeCCChhhhHh
Confidence 123677888887531 11111211 33 245677777777755
No 460
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=98.16 E-value=3.6e-06 Score=89.38 Aligned_cols=114 Identities=22% Similarity=0.316 Sum_probs=74.9
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCe--EEEEechhh--------------------------------hhh
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGPEI--------------------------------MSK 281 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~--~i~v~~~~l--------------------------------~~~ 281 (764)
++.+.++.-+.|.||+|+|||||+++|++.+... -+.++|.+. ...
T Consensus 25 s~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~ 104 (293)
T COG1131 25 SFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFAR 104 (293)
T ss_pred eEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHH
Confidence 3456778889999999999999999999876421 122222110 011
Q ss_pred ccchh----H--------------------------HHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHH
Q 004267 282 LAGES----E--------------------------SNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQ 331 (764)
Q Consensus 282 ~~g~~----~--------------------------~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~ 331 (764)
..+.. . .+-+..+..|....|.++|+|| +.+.+|......
T Consensus 105 l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDE----------Pt~GLDp~~~~~ 174 (293)
T COG1131 105 LYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDE----------PTSGLDPESRRE 174 (293)
T ss_pred HhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECC----------CCcCCCHHHHHH
Confidence 11100 1 1123334566677899999999 555666667778
Q ss_pred HHHHhhcccCCCeEEEEEecCCCCCCCh
Q 004267 332 LLTLMDGLKSRAHVIVIGATNRPNSIDP 359 (764)
Q Consensus 332 Ll~~ld~~~~~~~v~vI~atn~~~~ld~ 359 (764)
+.+++..+....+..|+.+||.++.+..
T Consensus 175 ~~~~l~~l~~~g~~tvlissH~l~e~~~ 202 (293)
T COG1131 175 IWELLRELAKEGGVTILLSTHILEEAEE 202 (293)
T ss_pred HHHHHHHHHhCCCcEEEEeCCcHHHHHH
Confidence 8888888877776778889998765543
No 461
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.16 E-value=1.3e-05 Score=76.95 Aligned_cols=110 Identities=21% Similarity=0.243 Sum_probs=63.1
Q ss_pred eeeeCCCCCChhHHHHHHHHHh---CCeeEEEecccchhc----------------------ccCc--chHHHHHHHHHH
Q 004267 518 VLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTM----------------------WFGE--SEANVREIFDKA 570 (764)
Q Consensus 518 ill~GppGtGKT~lak~lA~~~---~~~~i~v~~~~l~~~----------------------~~g~--se~~i~~~f~~a 570 (764)
++++||||+|||++++.++... +.+.+.++....... +... .....+..+..+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998875 455555544322210 0000 111122345566
Q ss_pred hhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCC
Q 004267 571 RQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPD 631 (764)
Q Consensus 571 ~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~ 631 (764)
....|.++++||+..+................+.+..++..+.. .++.++++++.+.
T Consensus 82 ~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~----~~~~vv~~~~~~~ 138 (165)
T cd01120 82 ERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARK----GGVTVIFTLQVPS 138 (165)
T ss_pred hCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhc----CCceEEEEEecCC
Confidence 67788999999999987643210001122334455555554432 3556666665544
No 462
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.15 E-value=2.7e-05 Score=83.78 Aligned_cols=159 Identities=26% Similarity=0.428 Sum_probs=98.4
Q ss_pred CCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEech-------
Q 004267 204 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGP------- 276 (764)
Q Consensus 204 ~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~------- 276 (764)
.+.|.-+.|.+..+..|- +.--. +.-.++||-|+.|+||||++|+|+..++..-....|+
T Consensus 13 ~~pf~aivGqd~lk~aL~----l~av~---------P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~ 79 (423)
T COG1239 13 NLPFTAIVGQDPLKLALG----LNAVD---------PQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDD 79 (423)
T ss_pred ccchhhhcCchHHHHHHh----hhhcc---------cccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCC
Confidence 356777889887666542 11111 2235799999999999999999999986433222220
Q ss_pred ------h-------------------hhhhccchhHHHH------HHHHH----------HHHhcCCeEEEEccccccCC
Q 004267 277 ------E-------------------IMSKLAGESESNL------RKAFE----------EAEKNAPSIIFIDEIDSIAP 315 (764)
Q Consensus 277 ------~-------------------l~~~~~g~~~~~l------~~vf~----------~a~~~~p~il~iDEid~l~~ 315 (764)
. +...-.+.++.++ ..+.+ -|+ ..-.|+++||+..|.
T Consensus 80 P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~-AnRGIlYvDEvnlL~- 157 (423)
T COG1239 80 PEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLAR-ANRGILYVDEVNLLD- 157 (423)
T ss_pred hhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhh-ccCCEEEEecccccc-
Confidence 0 1111112223211 11111 111 123599999987663
Q ss_pred CCCCCchHHHHHHHHHHHHHhhc-----------ccCCCeEEEEEecCCCC-CCChhhhccCCcceEEEecCC-ChHHHH
Q 004267 316 KREKTHGEVERRIVSQLLTLMDG-----------LKSRAHVIVIGATNRPN-SIDPALRRFGRFDREIDIGVP-DEVGRL 382 (764)
Q Consensus 316 ~~~~~~~~~~~~v~~~Ll~~ld~-----------~~~~~~v~vI~atn~~~-~ld~al~r~~rf~~~i~i~~p-~~~~R~ 382 (764)
..++..|++.+.. +....++++|||+|..+ .|-|-|+. ||...+.+..| +.++|.
T Consensus 158 ----------d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~~rv 225 (423)
T COG1239 158 ----------DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLEERV 225 (423)
T ss_pred ----------HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHHHHH
Confidence 4567778777653 12235799999999753 66777776 89999988766 567888
Q ss_pred HHHHHHh
Q 004267 383 EVLRIHT 389 (764)
Q Consensus 383 ~il~~~~ 389 (764)
+|.+...
T Consensus 226 ~Ii~r~~ 232 (423)
T COG1239 226 EIIRRRL 232 (423)
T ss_pred HHHHHHH
Confidence 8887543
No 463
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.14 E-value=3.4e-05 Score=82.98 Aligned_cols=28 Identities=32% Similarity=0.523 Sum_probs=25.0
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhC
Q 004267 240 KPPKGILLYGPPGSGKTLIARAVANETG 267 (764)
Q Consensus 240 ~~~~~vLL~GppGtGKTtLar~la~~l~ 267 (764)
.+++.+.|.||+|+||||.++.||+++.
T Consensus 98 r~G~V~GilG~NGiGKsTalkILaGel~ 125 (591)
T COG1245 98 RPGKVVGILGPNGIGKSTALKILAGELK 125 (591)
T ss_pred CCCcEEEEEcCCCccHHHHHHHHhCccc
Confidence 4566799999999999999999999873
No 464
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.13 E-value=9.6e-06 Score=83.59 Aligned_cols=133 Identities=20% Similarity=0.258 Sum_probs=86.0
Q ss_pred ceeeeCCCCCChhHHHHHHHHHhCCe--e----EEEecccchhcccCcchHHHHHHHHHHhh-------CCCeEEEEecc
Q 004267 517 GVLFYGPPGCGKTLLAKAIANECQAN--F----ISVKGPELLTMWFGESEANVREIFDKARQ-------SAPCVLFFDEL 583 (764)
Q Consensus 517 gill~GppGtGKT~lak~lA~~~~~~--~----i~v~~~~l~~~~~g~se~~i~~~f~~a~~-------~~p~iifiDEi 583 (764)
++|+|||||+|||+...+.|..+..+ + ...+.++=.+ . ...+.-...|..+++ ..+..+++||+
T Consensus 64 h~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~rg--i-d~vr~qi~~fast~~~~~fst~~~fKlvILDEA 140 (360)
T KOG0990|consen 64 HLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDDRG--I-DPVRQQIHLFASTQQPTTYSTHAAFKLVILDEA 140 (360)
T ss_pred cccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCccC--C-cchHHHHHHHHhhccceeccccCceeEEEecch
Confidence 79999999999999999999986543 1 1122222111 0 112333456666663 47889999999
Q ss_pred cchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCCCCCccCCCCCccceEEeecCCCHHHHHHHHHH
Q 004267 584 DSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKA 663 (764)
Q Consensus 584 d~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~ 663 (764)
|.+.. ..-|+|-...+.+.. ++-++.-+|.|..+-|++.. ||. .+.|.+.+......++..
T Consensus 141 DaMT~--------------~AQnALRRviek~t~--n~rF~ii~n~~~ki~pa~qs--Rct-rfrf~pl~~~~~~~r~sh 201 (360)
T KOG0990|consen 141 DAMTR--------------DAQNALRRVIEKYTA--NTRFATISNPPQKIHPAQQS--RCT-RFRFAPLTMAQQTERQSH 201 (360)
T ss_pred hHhhH--------------HHHHHHHHHHHHhcc--ceEEEEeccChhhcCchhhc--ccc-cCCCCCCChhhhhhHHHH
Confidence 99753 223333334444333 34444667999999999987 886 566777777777777777
Q ss_pred HhccCCCC
Q 004267 664 CLRKSPVS 671 (764)
Q Consensus 664 ~~~~~~~~ 671 (764)
+....++.
T Consensus 202 i~e~e~~~ 209 (360)
T KOG0990|consen 202 IRESEQKE 209 (360)
T ss_pred HHhcchhh
Confidence 77555443
No 465
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.12 E-value=2.1e-05 Score=84.95 Aligned_cols=145 Identities=22% Similarity=0.272 Sum_probs=82.8
Q ss_pred cChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCeEEEEechhhhhhcc----
Q 004267 211 GGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLA---- 283 (764)
Q Consensus 211 ~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~~~---- 283 (764)
.|....++++++.+..- ......|||+|++||||+++|++|-... +.+|+.++|..+.....
T Consensus 2 iG~S~~m~~~~~~~~~~-----------a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~l 70 (329)
T TIGR02974 2 IGESNAFLEVLEQVSRL-----------APLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSEL 70 (329)
T ss_pred CcCCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHH
Confidence 34455555655555431 1335679999999999999999997654 46899999976532110
Q ss_pred -chhH-------HHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhccc---------CCCeEE
Q 004267 284 -GESE-------SNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK---------SRAHVI 346 (764)
Q Consensus 284 -g~~~-------~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~---------~~~~v~ 346 (764)
|... ..-...|+.| ....||||||+.+.. .+...|+..++.-. ...++-
T Consensus 71 fG~~~g~~~ga~~~~~G~~~~a---~gGtL~Ldei~~L~~-----------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~R 136 (329)
T TIGR02974 71 FGHEAGAFTGAQKRHQGRFERA---DGGTLFLDELATASL-----------LVQEKLLRVIEYGEFERVGGSQTLQVDVR 136 (329)
T ss_pred hccccccccCcccccCCchhhC---CCCEEEeCChHhCCH-----------HHHHHHHHHHHcCcEEecCCCceeccceE
Confidence 1000 0000113322 346899999998742 23355666654321 123577
Q ss_pred EEEecCCC-------CCCChhhhccCCcceEEEecCCChHHHHH
Q 004267 347 VIGATNRP-------NSIDPALRRFGRFDREIDIGVPDEVGRLE 383 (764)
Q Consensus 347 vI~atn~~-------~~ld~al~r~~rf~~~i~i~~p~~~~R~~ 383 (764)
+|++|+.. ..+.+.|.. |+. .+.+.+|...+|.+
T Consensus 137 iI~at~~~l~~~~~~g~fr~dL~~--rl~-~~~i~lPpLReR~e 177 (329)
T TIGR02974 137 LVCATNADLPALAAEGRFRADLLD--RLA-FDVITLPPLRERQE 177 (329)
T ss_pred EEEechhhHHHHhhcCchHHHHHH--Hhc-chhcCCCchhhhhh
Confidence 88888753 122333332 442 34566777666654
No 466
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.12 E-value=1.2e-05 Score=81.16 Aligned_cols=115 Identities=22% Similarity=0.331 Sum_probs=65.6
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh---CCeEEEEechhhhh--------hcc---------------chhHHHHH
Q 004267 238 GVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMS--------KLA---------------GESESNLR 291 (764)
Q Consensus 238 ~i~~~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~--------~~~---------------g~~~~~l~ 291 (764)
|++.+.-++|+||||||||+++..++... +...+.++..++.. ... .+....+.
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 87 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQ 87 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHH
Confidence 78888999999999999999999887543 45566666543100 000 01111234
Q ss_pred HHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecC
Q 004267 292 KAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATN 352 (764)
Q Consensus 292 ~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn 352 (764)
.+.+.+....+++++||-+..+.............+....++..|..+....++.++.+.+
T Consensus 88 ~l~~~~~~~~~~lvVIDSis~l~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~ 148 (209)
T TIGR02237 88 KTSKFIDRDSASLVVVDSFTALYRLELSDDRISRNRELARQLTLLLSLARKKNLAVVITNQ 148 (209)
T ss_pred HHHHHHhhcCccEEEEeCcHHHhHHHhCCccHHHHHHHHHHHHHHHHHHHHcCCEEEEEcc
Confidence 4444455567899999999988643211111111112222333344444455666666544
No 467
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.12 E-value=9.1e-06 Score=91.65 Aligned_cols=125 Identities=22% Similarity=0.373 Sum_probs=74.1
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhCCeE--EEEechhhhh--------------------------hccchhHHHH
Q 004267 239 VKPPKGILLYGPPGSGKTLIARAVANETGAFF--FCINGPEIMS--------------------------KLAGESESNL 290 (764)
Q Consensus 239 i~~~~~vLL~GppGtGKTtLar~la~~l~~~~--i~v~~~~l~~--------------------------~~~g~~~~~l 290 (764)
+..+.+++|+||||||||+|++.+++.+...- ..+.+..+.+ ...|.....-
T Consensus 207 a~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~ 286 (506)
T PRK09862 207 AAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPG 286 (506)
T ss_pred ccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCccCCCccchHHHHhCCCceeh
Confidence 45678899999999999999999998764221 1111111110 0001000000
Q ss_pred HHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhccc-----------CCCeEEEEEecCCCC----
Q 004267 291 RKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK-----------SRAHVIVIGATNRPN---- 355 (764)
Q Consensus 291 ~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-----------~~~~v~vI~atn~~~---- 355 (764)
.-.+..| ...+||+||++.+- ..+...|++.|+.-. ...++.+|+++|...
T Consensus 287 pG~l~~A---~gGvLfLDEi~e~~-----------~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~ 352 (506)
T PRK09862 287 PGEISLA---HNGVLFLDELPEFE-----------RRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHY 352 (506)
T ss_pred hhHhhhc---cCCEEecCCchhCC-----------HHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCccceec
Confidence 1122333 23599999987642 345566666664321 134689999999752
Q ss_pred -----------------CCChhhhccCCcceEEEecCCChH
Q 004267 356 -----------------SIDPALRRFGRFDREIDIGVPDEV 379 (764)
Q Consensus 356 -----------------~ld~al~r~~rf~~~i~i~~p~~~ 379 (764)
.++..+.. ||+-.+.++.|+.+
T Consensus 353 ~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~ 391 (506)
T PRK09862 353 QGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPG 391 (506)
T ss_pred CCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHH
Confidence 24445554 89999999988765
No 468
>PF05729 NACHT: NACHT domain
Probab=98.12 E-value=2.4e-05 Score=75.41 Aligned_cols=140 Identities=21% Similarity=0.326 Sum_probs=73.9
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCC---------eEEEEechhhhhhc------------cchhHHHHHHHHH-HHHhcC
Q 004267 244 GILLYGPPGSGKTLIARAVANETGA---------FFFCINGPEIMSKL------------AGESESNLRKAFE-EAEKNA 301 (764)
Q Consensus 244 ~vLL~GppGtGKTtLar~la~~l~~---------~~i~v~~~~l~~~~------------~g~~~~~l~~vf~-~a~~~~ 301 (764)
-++|+|+||+|||++++.++..+.. .++.+...+..... ...........+. ......
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 4899999999999999999877521 12333333222110 0111111122222 223455
Q ss_pred CeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhc-ccCCCeEEEEEecCCCCCCChhhhccCCcceEEEecCCChHH
Q 004267 302 PSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDG-LKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVG 380 (764)
Q Consensus 302 p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~-~~~~~~v~vI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~ 380 (764)
..+++||.+|.+...... .........+..++.. ...+..++| ++. +..... +.+...-...+.+...+.++
T Consensus 82 ~~llilDglDE~~~~~~~---~~~~~~~~~l~~l~~~~~~~~~~lii--t~r-~~~~~~-~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS---QERQRLLDLLSQLLPQALPPGVKLII--TSR-PRAFPD-LRRRLKQAQILELEPFSEED 154 (166)
T ss_pred ceEEEEechHhcccchhh---hHHHHHHHHHHHHhhhccCCCCeEEE--EEc-CChHHH-HHHhcCCCcEEEECCCCHHH
Confidence 678899999998764332 1122333444455544 222333333 333 222222 33211222567888888888
Q ss_pred HHHHHHHHhc
Q 004267 381 RLEVLRIHTK 390 (764)
Q Consensus 381 R~~il~~~~~ 390 (764)
..++++.+.+
T Consensus 155 ~~~~~~~~f~ 164 (166)
T PF05729_consen 155 IKQYLRKYFS 164 (166)
T ss_pred HHHHHHHHhh
Confidence 8888877654
No 469
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.11 E-value=2.1e-05 Score=85.05 Aligned_cols=149 Identities=21% Similarity=0.278 Sum_probs=88.4
Q ss_pred cccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCeEEEEechhhhhh--
Q 004267 207 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSK-- 281 (764)
Q Consensus 207 ~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~-- 281 (764)
++++.|-+..++++++.+..-. ..+..|+|+|++||||+++|++|-... +.+|+.++|..+...
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a-----------~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~ 73 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLA-----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLL 73 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHH
Confidence 4567788888888877665421 335689999999999999999997654 367999999765321
Q ss_pred ---ccchhH-------HHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhccc--C-------C
Q 004267 282 ---LAGESE-------SNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK--S-------R 342 (764)
Q Consensus 282 ---~~g~~~-------~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~--~-------~ 342 (764)
..|... ......|+. .....|||||++.+... +...|+..++.-. . .
T Consensus 74 ~~~lfg~~~~~~~g~~~~~~g~l~~---a~gGtL~l~~i~~L~~~-----------~Q~~L~~~l~~~~~~~~g~~~~~~ 139 (326)
T PRK11608 74 DSELFGHEAGAFTGAQKRHPGRFER---ADGGTLFLDELATAPML-----------VQEKLLRVIEYGELERVGGSQPLQ 139 (326)
T ss_pred HHHHccccccccCCcccccCCchhc---cCCCeEEeCChhhCCHH-----------HHHHHHHHHhcCcEEeCCCCceee
Confidence 111000 000112222 23468999999987532 3355666664321 0 1
Q ss_pred CeEEEEEecCCC-------CCCChhhhccCCcceEEEecCCChHHHHH
Q 004267 343 AHVIVIGATNRP-------NSIDPALRRFGRFDREIDIGVPDEVGRLE 383 (764)
Q Consensus 343 ~~v~vI~atn~~-------~~ld~al~r~~rf~~~i~i~~p~~~~R~~ 383 (764)
.++-+|++|+.. ..+.+.|.. ||. .+.+.+|...+|.+
T Consensus 140 ~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~-~~~i~lPpLReR~e 184 (326)
T PRK11608 140 VNVRLVCATNADLPAMVAEGKFRADLLD--RLA-FDVVQLPPLRERQS 184 (326)
T ss_pred ccEEEEEeCchhHHHHHHcCCchHHHHH--hcC-CCEEECCChhhhhh
Confidence 246777777653 233344443 452 24556666666654
No 470
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.11 E-value=8e-06 Score=87.04 Aligned_cols=71 Identities=25% Similarity=0.483 Sum_probs=49.1
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHh---CCeEEEEechhhhhhccchhH-HHHHHHHHHHHhcCCeEEEEcccccc
Q 004267 241 PPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGESE-SNLRKAFEEAEKNAPSIIFIDEIDSI 313 (764)
Q Consensus 241 ~~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~~~g~~~-~~l~~vf~~a~~~~p~il~iDEid~l 313 (764)
.+++++|+||+|||||+|+.++|+++ +..+..+..++++........ ..+...++.. ....+|+|||+..-
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l--~~~dlLiIDDiG~e 229 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAV--KEAPVLMLDDIGAE 229 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHh--cCCCEEEEecCCCc
Confidence 46799999999999999999999987 566777777776554322111 1123334433 34579999998643
No 471
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=98.11 E-value=9.4e-06 Score=78.86 Aligned_cols=106 Identities=25% Similarity=0.404 Sum_probs=64.7
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCe--EEEEec----------hhhh-----hh----ccc--hhHHHHHH
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCING----------PEIM-----SK----LAG--ESESNLRK 292 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~--~i~v~~----------~~l~-----~~----~~g--~~~~~l~~ 292 (764)
++.+.+++.+.|.||+|+|||||++.|++.+... -+.+++ +.+. .. ... ...++-+-
T Consensus 21 ~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS~G~~~rv 100 (166)
T cd03223 21 SFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRL 100 (166)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhccCCCCCCHHHHHHH
Confidence 3567889999999999999999999999986321 011111 0000 00 000 12234455
Q ss_pred HHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCC
Q 004267 293 AFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPN 355 (764)
Q Consensus 293 vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~ 355 (764)
.+..+....|.++++||.. ..++......+.+.+..+ ...+|.+|++++
T Consensus 101 ~laral~~~p~~lllDEPt----------~~LD~~~~~~l~~~l~~~----~~tiiivsh~~~ 149 (166)
T cd03223 101 AFARLLLHKPKFVFLDEAT----------SALDEESEDRLYQLLKEL----GITVISVGHRPS 149 (166)
T ss_pred HHHHHHHcCCCEEEEECCc----------cccCHHHHHHHHHHHHHh----CCEEEEEeCChh
Confidence 6777778899999999943 333344445555555544 135556777754
No 472
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.10 E-value=8.7e-06 Score=92.83 Aligned_cols=151 Identities=28% Similarity=0.417 Sum_probs=91.5
Q ss_pred CCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHH-----------hCCeEEEE
Q 004267 205 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANE-----------TGAFFFCI 273 (764)
Q Consensus 205 ~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~-----------l~~~~i~v 273 (764)
-+|+++.|....++++++.+... ......|||+|++||||+++|++|-.. .+.+|+.+
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~-----------A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~i 284 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLY-----------ARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAV 284 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEe
Confidence 35788999999999888877531 123568999999999999999999776 35689999
Q ss_pred echhhhhh-----ccchhHH--------HHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhccc
Q 004267 274 NGPEIMSK-----LAGESES--------NLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK 340 (764)
Q Consensus 274 ~~~~l~~~-----~~g~~~~--------~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~ 340 (764)
||..+... ..|.... .-.-.|+.| ....||||||+.+.+. +...|+..++.-.
T Consensus 285 nCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A---~gGTLfLdeI~~Lp~~-----------~Q~kLl~~L~e~~ 350 (538)
T PRK15424 285 NCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIA---HGGTLFLDEIGEMPLP-----------LQTRLLRVLEEKE 350 (538)
T ss_pred ecccCChhhHHHHhcCCccccccCccccccCCchhcc---CCCEEEEcChHhCCHH-----------HHHHHHhhhhcCe
Confidence 99765321 1111000 001133333 2358999999987532 3345666554311
Q ss_pred -----C----CCeEEEEEecCCCCCCChhhhccCCcc-------eEEEecCCChHHHHH
Q 004267 341 -----S----RAHVIVIGATNRPNSIDPALRRFGRFD-------REIDIGVPDEVGRLE 383 (764)
Q Consensus 341 -----~----~~~v~vI~atn~~~~ld~al~r~~rf~-------~~i~i~~p~~~~R~~ 383 (764)
. ..++-+|++|+.. +.... ..|+|. ..+.+..|...+|.+
T Consensus 351 ~~r~G~~~~~~~dvRiIaat~~~--L~~~v-~~g~Fr~dL~yrL~~~~I~lPPLReR~e 406 (538)
T PRK15424 351 VTRVGGHQPVPVDVRVISATHCD--LEEDV-RQGRFRRDLFYRLSILRLQLPPLRERVA 406 (538)
T ss_pred EEecCCCceeccceEEEEecCCC--HHHHH-hcccchHHHHHHhcCCeecCCChhhchh
Confidence 1 1245788888753 22211 112222 235666777766654
No 473
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.10 E-value=1.8e-05 Score=85.16 Aligned_cols=129 Identities=21% Similarity=0.317 Sum_probs=85.4
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCC-------------------------eEEEEechhhhhhccc-----hhHHHH
Q 004267 241 PPKGILLYGPPGSGKTLIARAVANETGA-------------------------FFFCINGPEIMSKLAG-----ESESNL 290 (764)
Q Consensus 241 ~~~~vLL~GppGtGKTtLar~la~~l~~-------------------------~~i~v~~~~l~~~~~g-----~~~~~l 290 (764)
-+..+||+||+|+|||++|+.+|+.+.+ .++.+....- ....| -.-..+
T Consensus 20 ~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~-~~~~g~~~~~I~id~i 98 (325)
T PRK08699 20 RPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSD-EPENGRKLLQIKIDAV 98 (325)
T ss_pred cceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccc-cccccccCCCcCHHHH
Confidence 3557999999999999999999998632 1233322100 00001 123456
Q ss_pred HHHHHHHHh----cCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCChhhhccCC
Q 004267 291 RKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGR 366 (764)
Q Consensus 291 ~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~r 366 (764)
|.+.+.+.. ....|+++|+++.+- ....+.|+..++.... .+.+|.+|+.++.+.+.+++ |
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~Ld-----------~~a~naLLk~LEep~~--~~~~Ilvth~~~~ll~ti~S--R 163 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESMN-----------LQAANSLLKVLEEPPP--QVVFLLVSHAADKVLPTIKS--R 163 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhCC-----------HHHHHHHHHHHHhCcC--CCEEEEEeCChHhChHHHHH--H
Confidence 776665543 334588888887663 2345677788877643 35566689999999999887 5
Q ss_pred cceEEEecCCChHHHHHHHH
Q 004267 367 FDREIDIGVPDEVGRLEVLR 386 (764)
Q Consensus 367 f~~~i~i~~p~~~~R~~il~ 386 (764)
. ..+.++.|+.++-.+.|.
T Consensus 164 c-~~~~~~~~~~~~~~~~L~ 182 (325)
T PRK08699 164 C-RKMVLPAPSHEEALAYLR 182 (325)
T ss_pred h-hhhcCCCCCHHHHHHHHH
Confidence 5 557888888887776665
No 474
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.09 E-value=6e-06 Score=82.07 Aligned_cols=31 Identities=23% Similarity=0.333 Sum_probs=27.1
Q ss_pred hCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Q 004267 237 IGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (764)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 267 (764)
+.+.+++.+.+.||+|||||||+|.|.+.+.
T Consensus 29 l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~ 59 (263)
T COG1127 29 LDVPRGEILAILGGSGSGKSTLLRLILGLLR 59 (263)
T ss_pred eeecCCcEEEEECCCCcCHHHHHHHHhccCC
Confidence 4567788899999999999999999998763
No 475
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.09 E-value=4.8e-06 Score=89.39 Aligned_cols=69 Identities=29% Similarity=0.495 Sum_probs=48.1
Q ss_pred cceeeeCCCCCChhHHHHHHHHHh---CCeeEEEecccchhcccC---cchHHHHHHHHHHhhCCCeEEEEecccch
Q 004267 516 KGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFG---ESEANVREIFDKARQSAPCVLFFDELDSI 586 (764)
Q Consensus 516 ~gill~GppGtGKT~lak~lA~~~---~~~~i~v~~~~l~~~~~g---~se~~i~~~f~~a~~~~p~iifiDEid~l 586 (764)
.+++|+||+|||||+||.++|.++ +..++.+..++++..... .........++.... ..+|+|||+...
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~~--~DLLIIDDlG~e 258 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLIN--CDLLIIDDLGTE 258 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhcc--CCEEEEeccCCC
Confidence 679999999999999999999975 667888888887654311 011111222344333 369999999774
No 476
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=98.09 E-value=8.7e-06 Score=81.29 Aligned_cols=109 Identities=22% Similarity=0.309 Sum_probs=66.4
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHh--CCe--EEEEechhhh---------------hhccc------------
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANET--GAF--FFCINGPEIM---------------SKLAG------------ 284 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l--~~~--~i~v~~~~l~---------------~~~~g------------ 284 (764)
++.+.+++.++|.||+|+|||||++.|++.. ... -+.+++.++. ..+.+
T Consensus 29 ~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~ 108 (194)
T cd03213 29 SGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAK 108 (194)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHH
Confidence 3456889999999999999999999999987 321 1222221110 00000
Q ss_pred ----hhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCC
Q 004267 285 ----ESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPN 355 (764)
Q Consensus 285 ----~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~ 355 (764)
...++-+-.+..+....|.++++||.. ..++......+.+++..+... ...+|.+|++++
T Consensus 109 ~~~LS~G~~qrv~laral~~~p~illlDEP~----------~~LD~~~~~~l~~~l~~~~~~-~~tiii~sh~~~ 172 (194)
T cd03213 109 LRGLSGGERKRVSIALELVSNPSLLFLDEPT----------SGLDSSSALQVMSLLRRLADT-GRTIICSIHQPS 172 (194)
T ss_pred hccCCHHHHHHHHHHHHHHcCCCEEEEeCCC----------cCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCch
Confidence 012233445666777889999999943 334444556666666665443 345556677653
No 477
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.08 E-value=1.1e-05 Score=81.53 Aligned_cols=31 Identities=35% Similarity=0.545 Sum_probs=27.6
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANET 266 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l 266 (764)
++.+.+++.+.|.||+|+|||||++.|++..
T Consensus 22 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 22 SFTLAAGEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3456789999999999999999999999875
No 478
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.08 E-value=7.2e-06 Score=87.79 Aligned_cols=81 Identities=15% Similarity=0.243 Sum_probs=59.9
Q ss_pred cccChHHHHHHHHHHHHccccChhhhhhhCC-CCCceEEEECCCCCCHHHHHHHHHHHhCC-------eEEEEec----h
Q 004267 209 DVGGVRKQMAQIRELVELPLRHPQLFKSIGV-KPPKGILLYGPPGSGKTLIARAVANETGA-------FFFCING----P 276 (764)
Q Consensus 209 ~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i-~~~~~vLL~GppGtGKTtLar~la~~l~~-------~~i~v~~----~ 276 (764)
++.|+++.++++.+.+.... .|. ...+.++|+|||||||||||++|++.++. +++.+.+ +
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a--------~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~~s 123 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAA--------QGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGEES 123 (361)
T ss_pred hccCcHHHHHHHHHHHHHHH--------hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCCCC
Confidence 79999999988877665322 122 23567899999999999999999999976 7888887 5
Q ss_pred hhhhhccchhHHHHHHHHHHH
Q 004267 277 EIMSKLAGESESNLRKAFEEA 297 (764)
Q Consensus 277 ~l~~~~~g~~~~~l~~vf~~a 297 (764)
.+.....+-.....+..|.+.
T Consensus 124 p~~e~Pl~l~p~~~r~~~~~~ 144 (361)
T smart00763 124 PMHEDPLHLFPDELREDLEDE 144 (361)
T ss_pred CCccCCcccCCHHHHHHHHHH
Confidence 555555555566677776544
No 479
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.07 E-value=1e-05 Score=89.27 Aligned_cols=153 Identities=29% Similarity=0.427 Sum_probs=94.2
Q ss_pred CCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCeEEEEechhhhh
Q 004267 204 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMS 280 (764)
Q Consensus 204 ~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~ 280 (764)
..+|++|.|-..++.++.+.... .......|||+|.+||||..+|++|=+.. +.+|+.+||..+-.
T Consensus 241 ~y~f~~Iig~S~~m~~~~~~akr-----------~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe 309 (560)
T COG3829 241 KYTFDDIIGESPAMLRVLELAKR-----------IAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPE 309 (560)
T ss_pred ccchhhhccCCHHHHHHHHHHHh-----------hcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCH
Confidence 45788999988888777766653 22446689999999999999999997765 57899999965422
Q ss_pred h-----ccc----hhHHH----HHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhc-----cc--
Q 004267 281 K-----LAG----ESESN----LRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDG-----LK-- 340 (764)
Q Consensus 281 ~-----~~g----~~~~~----l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~-----~~-- 340 (764)
. ..| ..... -.-.|+.|.. .-||+|||..+.. .+...|+..+.. +.
T Consensus 310 ~LlESELFGye~GAFTGA~~~GK~GlfE~A~g---GTLFLDEIgempl-----------~LQaKLLRVLQEkei~rvG~t 375 (560)
T COG3829 310 TLLESELFGYEKGAFTGASKGGKPGLFELANG---GTLFLDEIGEMPL-----------PLQAKLLRVLQEKEIERVGGT 375 (560)
T ss_pred HHHHHHHhCcCCccccccccCCCCcceeeccC---CeEEehhhccCCH-----------HHHHHHHHHHhhceEEecCCC
Confidence 1 111 10000 1123444433 4799999987642 233445544432 11
Q ss_pred --CCCeEEEEEecCCCCCCChhhhccCCcc-------eEEEecCCChHHHHHH
Q 004267 341 --SRAHVIVIGATNRPNSIDPALRRFGRFD-------REIDIGVPDEVGRLEV 384 (764)
Q Consensus 341 --~~~~v~vI~atn~~~~ld~al~r~~rf~-------~~i~i~~p~~~~R~~i 384 (764)
....|-||+|||+. +..++.. |+|- ..+.+.+|...+|.+-
T Consensus 376 ~~~~vDVRIIAATN~n--L~~~i~~-G~FReDLYYRLNV~~i~iPPLReR~eD 425 (560)
T COG3829 376 KPIPVDVRIIAATNRN--LEKMIAE-GTFREDLYYRLNVIPITIPPLRERKED 425 (560)
T ss_pred CceeeEEEEEeccCcC--HHHHHhc-CcchhhheeeeceeeecCCCcccCcch
Confidence 12478999999974 3222221 2321 2356677777777653
No 480
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=98.07 E-value=6.6e-06 Score=83.75 Aligned_cols=32 Identities=22% Similarity=0.423 Sum_probs=28.1
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 267 (764)
++.+.+++.+.|.||+|+|||||+++|++.+.
T Consensus 24 s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~ 55 (218)
T cd03255 24 SLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR 55 (218)
T ss_pred EEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC
Confidence 34568899999999999999999999998763
No 481
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.06 E-value=9.3e-05 Score=84.16 Aligned_cols=66 Identities=26% Similarity=0.410 Sum_probs=50.7
Q ss_pred ccCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEE
Q 004267 200 DRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCI 273 (764)
Q Consensus 200 ~~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v 273 (764)
+...+.+.+|+.-..+-+++++..+.-.+. +-.+.+-+||+|||||||||++++||++++..+..-
T Consensus 11 ~ky~P~~~~eLavhkkKv~eV~~wl~~~~~--------~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew 76 (519)
T PF03215_consen 11 EKYAPKTLDELAVHKKKVEEVRSWLEEMFS--------GSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEW 76 (519)
T ss_pred hhcCCCCHHHhhccHHHHHHHHHHHHHHhc--------cCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEe
Confidence 345667788888888888888888864221 223455789999999999999999999999876553
No 482
>PRK06921 hypothetical protein; Provisional
Probab=98.06 E-value=5.9e-06 Score=86.38 Aligned_cols=68 Identities=25% Similarity=0.264 Sum_probs=44.5
Q ss_pred CcceeeeCCCCCChhHHHHHHHHHh----CCeeEEEecccchhcccCcchHHHHHHHHHHhhCCCeEEEEecccc
Q 004267 515 SKGVLFYGPPGCGKTLLAKAIANEC----QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDS 585 (764)
Q Consensus 515 ~~gill~GppGtGKT~lak~lA~~~----~~~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~~p~iifiDEid~ 585 (764)
..+++|+||||+|||+|+.++|+++ +...+.+...+++..... ........++... ...+|+|||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~-~~~~~~~~~~~~~--~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKD-DFDLLEAKLNRMK--KVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHH-HHHHHHHHHHHhc--CCCEEEEecccc
Confidence 4679999999999999999999975 456667776665442211 1111222233332 346999999954
No 483
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.06 E-value=1.3e-05 Score=77.03 Aligned_cols=31 Identities=26% Similarity=0.473 Sum_probs=28.1
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANET 266 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l 266 (764)
++++.++..|.+.||+|||||||++.+|+..
T Consensus 25 sL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~ 55 (259)
T COG4525 25 SLTIASGELVVVLGPSGCGKTTLLNLIAGFV 55 (259)
T ss_pred ceeecCCCEEEEEcCCCccHHHHHHHHhcCc
Confidence 4567889999999999999999999999875
No 484
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.06 E-value=3.5e-06 Score=82.42 Aligned_cols=48 Identities=29% Similarity=0.538 Sum_probs=36.5
Q ss_pred hhhhhhccCCCCcc--eeeeCCCCCChhHHHHHHHHH--hCCeeEEEecccc
Q 004267 504 PEKFEKFGMSPSKG--VLFYGPPGCGKTLLAKAIANE--CQANFISVKGPEL 551 (764)
Q Consensus 504 ~~~~~~~~~~~~~g--ill~GppGtGKT~lak~lA~~--~~~~~i~v~~~~l 551 (764)
.+.++..++...+| +.+.||+|||||||.|++... .....|.++|.++
T Consensus 15 ~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~ 66 (240)
T COG1126 15 KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDV 66 (240)
T ss_pred eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEec
Confidence 34556666666666 999999999999999999873 4667777877433
No 485
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.06 E-value=3.4e-06 Score=83.53 Aligned_cols=32 Identities=19% Similarity=0.476 Sum_probs=28.4
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 267 (764)
++.+++++.|.|+||+|+|||||+|+|++...
T Consensus 24 nl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d 55 (258)
T COG3638 24 NLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD 55 (258)
T ss_pred eEEeCCCcEEEEECCCCCcHHHHHHHHhcccC
Confidence 45678999999999999999999999998553
No 486
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=2.1e-06 Score=93.39 Aligned_cols=48 Identities=27% Similarity=0.477 Sum_probs=40.1
Q ss_pred CCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Q 004267 205 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (764)
Q Consensus 205 ~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 267 (764)
..|.||.|++..+..+..... -+.++|++||||||||+|++.+.+.++
T Consensus 176 ~D~~DV~GQ~~AKrAleiAAA---------------GgHnLl~~GpPGtGKTmla~Rl~~lLP 223 (490)
T COG0606 176 PDFKDVKGQEQAKRALEIAAA---------------GGHNLLLVGPPGTGKTMLASRLPGLLP 223 (490)
T ss_pred cchhhhcCcHHHHHHHHHHHh---------------cCCcEEEecCCCCchHHhhhhhcccCC
Confidence 467899999999888855543 267899999999999999999988765
No 487
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.06 E-value=1.1e-05 Score=80.81 Aligned_cols=77 Identities=27% Similarity=0.393 Sum_probs=48.1
Q ss_pred hhhhCCCCCceEEEECCCCCCHHHHHHHHHHHh-----CCeE-------------EEEechhhhh----hccchhHHHHH
Q 004267 234 FKSIGVKPPKGILLYGPPGSGKTLIARAVANET-----GAFF-------------FCINGPEIMS----KLAGESESNLR 291 (764)
Q Consensus 234 ~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l-----~~~~-------------i~v~~~~l~~----~~~g~~~~~l~ 291 (764)
..++.+..++.++|.||+|+|||||+|.|++.. |.++ ......+-.. .+..+ ..++.
T Consensus 17 ~n~i~l~~g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e-~~~~~ 95 (199)
T cd03283 17 ANDIDMEKKNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAE-LRRLK 95 (199)
T ss_pred cceEEEcCCcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHH-HHHHH
Confidence 345566677889999999999999999998654 3221 1111111110 11111 14466
Q ss_pred HHHHHHHhcCCeEEEEcccc
Q 004267 292 KAFEEAEKNAPSIIFIDEID 311 (764)
Q Consensus 292 ~vf~~a~~~~p~il~iDEid 311 (764)
.+++.+....|.++++||.-
T Consensus 96 ~iL~~~~~~~p~llllDEp~ 115 (199)
T cd03283 96 EIVEKAKKGEPVLFLLDEIF 115 (199)
T ss_pred HHHHhccCCCCeEEEEeccc
Confidence 66666655578999999964
No 488
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=98.06 E-value=6.6e-06 Score=89.88 Aligned_cols=31 Identities=35% Similarity=0.528 Sum_probs=27.5
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANET 266 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l 266 (764)
++.+.+++.+.|.||+|||||||+++||+..
T Consensus 24 sl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~ 54 (356)
T PRK11650 24 DLDVADGEFIVLVGPSGCGKSTLLRMVAGLE 54 (356)
T ss_pred eEEEcCCCEEEEECCCCCcHHHHHHHHHCCC
Confidence 3456788899999999999999999999975
No 489
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.05 E-value=0.00013 Score=77.96 Aligned_cols=151 Identities=18% Similarity=0.279 Sum_probs=93.7
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCe---------------------EEEEe-chhhhhh-c-cchhHHHHHHHHHHH
Q 004267 242 PKGILLYGPPGSGKTLIARAVANETGAF---------------------FFCIN-GPEIMSK-L-AGESESNLRKAFEEA 297 (764)
Q Consensus 242 ~~~vLL~GppGtGKTtLar~la~~l~~~---------------------~i~v~-~~~l~~~-~-~g~~~~~l~~vf~~a 297 (764)
+..+||+||+|+||+++|.++|..+-+. ++.+. .++-.+. . ..-.-..+|.+.+.+
T Consensus 26 ~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~~~ 105 (319)
T PRK08769 26 GHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQKL 105 (319)
T ss_pred ceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHHHH
Confidence 4479999999999999999999876321 12221 0100000 0 001234556665544
Q ss_pred Hh----cCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCChhhhccCCcceEEEe
Q 004267 298 EK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDI 373 (764)
Q Consensus 298 ~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~rf~~~i~i 373 (764)
.. ..-.|++||++|.+.. ...+.|+..|+.-.. ++++|.+|+.++.+-|.+++ |. ..+.+
T Consensus 106 ~~~p~~g~~kV~iI~~ae~m~~-----------~AaNaLLKtLEEPp~--~~~fiL~~~~~~~lLpTIrS--RC-q~i~~ 169 (319)
T PRK08769 106 ALTPQYGIAQVVIVDPADAINR-----------AACNALLKTLEEPSP--GRYLWLISAQPARLPATIRS--RC-QRLEF 169 (319)
T ss_pred hhCcccCCcEEEEeccHhhhCH-----------HHHHHHHHHhhCCCC--CCeEEEEECChhhCchHHHh--hh-eEeeC
Confidence 33 2336999999998742 344778888877543 56666678889999999998 77 56789
Q ss_pred cCCChHHHHHHHHHHhcCCCCCCchhhhHHhhhcCCCchH
Q 004267 374 GVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGA 413 (764)
Q Consensus 374 ~~p~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~ 413 (764)
+.|+.++-.+.|... .. +..+...++..+.|-.+.
T Consensus 170 ~~~~~~~~~~~L~~~----~~-~~~~a~~~~~l~~G~p~~ 204 (319)
T PRK08769 170 KLPPAHEALAWLLAQ----GV-SERAAQEALDAARGHPGL 204 (319)
T ss_pred CCcCHHHHHHHHHHc----CC-ChHHHHHHHHHcCCCHHH
Confidence 999888777666532 11 122233455556655443
No 490
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.05 E-value=1.5e-05 Score=71.31 Aligned_cols=23 Identities=48% Similarity=0.923 Sum_probs=20.5
Q ss_pred eeeeCCCCCChhHHHHHHHHHhC
Q 004267 518 VLFYGPPGCGKTLLAKAIANECQ 540 (764)
Q Consensus 518 ill~GppGtGKT~lak~lA~~~~ 540 (764)
|.|+||||+|||++|+.||..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999998754
No 491
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.04 E-value=0.00011 Score=81.72 Aligned_cols=32 Identities=25% Similarity=0.411 Sum_probs=28.1
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 267 (764)
+|.+.+++...|.|.+|+|||||+|.|++...
T Consensus 28 ~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~ 59 (500)
T COG1129 28 SLTVRPGEVHALLGENGAGKSTLMKILSGVYP 59 (500)
T ss_pred eeEEeCceEEEEecCCCCCHHHHHHHHhCccc
Confidence 45678899999999999999999999998763
No 492
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.04 E-value=8.4e-06 Score=90.00 Aligned_cols=200 Identities=24% Similarity=0.351 Sum_probs=113.9
Q ss_pred ccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHh---CCeeEEEecccchh---
Q 004267 480 WEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLT--- 553 (764)
Q Consensus 480 ~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~---~~~~i~v~~~~l~~--- 553 (764)
+.++.|.....+++.+.+.. +. .....+|++|++||||-++|+++-..+ +.||+.++|..+-.
T Consensus 140 ~~~liG~S~am~~l~~~i~k-------vA----~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ 208 (464)
T COG2204 140 GGELVGESPAMQQLRRLIAK-------VA----PSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLL 208 (464)
T ss_pred cCCceecCHHHHHHHHHHHH-------Hh----CCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHH
Confidence 45566776666666554331 11 123459999999999999999998876 56999999975531
Q ss_pred --cccCcch----HH---HHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcC-----CCC--
Q 004267 554 --MWFGESE----AN---VREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDG-----MSA-- 617 (764)
Q Consensus 554 --~~~g~se----~~---i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~-----~~~-- 617 (764)
..+|... .. -.-.|+.|... .||+|||..+.- .+-..||..|.. +.+
T Consensus 209 ESELFGhekGAFTGA~~~r~G~fE~A~GG---TLfLDEI~~mpl--------------~~Q~kLLRvLqe~~~~rvG~~~ 271 (464)
T COG2204 209 ESELFGHEKGAFTGAITRRIGRFEQANGG---TLFLDEIGEMPL--------------ELQVKLLRVLQEREFERVGGNK 271 (464)
T ss_pred HHHhhcccccCcCCcccccCcceeEcCCc---eEEeeccccCCH--------------HHHHHHHHHHHcCeeEecCCCc
Confidence 1223211 11 12356666555 999999988642 333445544432 211
Q ss_pred --CCcEEEEecCCCC--CCCCccCCCCC---ccceEEeecCCCH----HHHHHHHHHHhcc----CCC-CCcccHHHHH-
Q 004267 618 --KKTVFIIGATNRP--DIIDPALLRPG---RLDQLIYIPLPDE----DSRHQIFKACLRK----SPV-SKDVDLRALA- 680 (764)
Q Consensus 618 --~~~v~vi~aTn~~--~~ld~allrpg---Rf~~~i~~~~p~~----~~r~~Il~~~~~~----~~~-~~~~~l~~la- 680 (764)
.-+|=||+|||+. +.+...-+|.. |+. ++.+..|.. +..--++++++++ .+. ...++-+.++
T Consensus 272 ~i~vdvRiIaaT~~dL~~~v~~G~FReDLyyRLn-V~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~ 350 (464)
T COG2204 272 PIKVDVRIIAATNRDLEEEVAAGRFREDLYYRLN-VVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAA 350 (464)
T ss_pred ccceeeEEEeecCcCHHHHHHcCCcHHHHHhhhc-cceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHH
Confidence 2267899999963 22222222211 443 444444433 3344455555543 221 1233333333
Q ss_pred --HHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 004267 681 --KYTQGFSGADITEICQRACKYAIRENIE 708 (764)
Q Consensus 681 --~~~~g~sg~di~~~~~~a~~~a~~~~~~ 708 (764)
.+.---+-++|+|++..|+..+-...+.
T Consensus 351 L~~y~WPGNVREL~N~ver~~il~~~~~i~ 380 (464)
T COG2204 351 LLAYDWPGNVRELENVVERAVILSEGPEIE 380 (464)
T ss_pred HHhCCCChHHHHHHHHHHHHHhcCCccccc
Confidence 3332235689999999999887665443
No 493
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.04 E-value=6.9e-06 Score=83.29 Aligned_cols=31 Identities=39% Similarity=0.608 Sum_probs=27.6
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANET 266 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l 266 (764)
++.+.+++.+.|.||+|+|||||++.|++.+
T Consensus 20 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 20 SLTVEPGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3556788999999999999999999999875
No 494
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=98.03 E-value=6.8e-06 Score=83.32 Aligned_cols=31 Identities=29% Similarity=0.502 Sum_probs=27.8
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANET 266 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l 266 (764)
++.+.+++.++|.||+|+|||||++.|++.+
T Consensus 20 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 20 NLDIADGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3456889999999999999999999999875
No 495
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.03 E-value=6.7e-05 Score=81.02 Aligned_cols=148 Identities=15% Similarity=0.194 Sum_probs=94.0
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCe------------------------EEEEechhhhhhccchhHHHHHHHHHHH
Q 004267 242 PKGILLYGPPGSGKTLIARAVANETGAF------------------------FFCINGPEIMSKLAGESESNLRKAFEEA 297 (764)
Q Consensus 242 ~~~vLL~GppGtGKTtLar~la~~l~~~------------------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a 297 (764)
+..+||+||+|+||+++|+++|..+-+. ++.+.... .+. .-.-..+|.+.+.+
T Consensus 24 ~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~~--~I~idqiR~l~~~~ 100 (334)
T PRK07993 24 HHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEK-GKS--SLGVDAVREVTEKL 100 (334)
T ss_pred ceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEeccc-ccc--cCCHHHHHHHHHHH
Confidence 4579999999999999999999887321 22221100 000 01233455555443
Q ss_pred ----HhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCChhhhccCCcceEEEe
Q 004267 298 ----EKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDI 373 (764)
Q Consensus 298 ----~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~rf~~~i~i 373 (764)
....-.|++||++|.+.. ...+.|+..|+.- ..+.++|.+|+.++.+-|.+++ |.. .+.+
T Consensus 101 ~~~~~~g~~kV~iI~~ae~m~~-----------~AaNaLLKtLEEP--p~~t~fiL~t~~~~~lLpTIrS--RCq-~~~~ 164 (334)
T PRK07993 101 YEHARLGGAKVVWLPDAALLTD-----------AAANALLKTLEEP--PENTWFFLACREPARLLATLRS--RCR-LHYL 164 (334)
T ss_pred hhccccCCceEEEEcchHhhCH-----------HHHHHHHHHhcCC--CCCeEEEEEECChhhChHHHHh--ccc-cccC
Confidence 334456999999998743 3457788888874 3467778888999999999998 663 5788
Q ss_pred cCCChHHHHHHHHHHhcCCCCCCchhhhHHhhhcCCCch
Q 004267 374 GVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVG 412 (764)
Q Consensus 374 ~~p~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~ 412 (764)
+.|+.++-.+.|... .... ......++..+.|-.+
T Consensus 165 ~~~~~~~~~~~L~~~---~~~~-~~~a~~~~~la~G~~~ 199 (334)
T PRK07993 165 APPPEQYALTWLSRE---VTMS-QDALLAALRLSAGAPG 199 (334)
T ss_pred CCCCHHHHHHHHHHc---cCCC-HHHHHHHHHHcCCCHH
Confidence 888887776666432 1221 2223445555555433
No 496
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.03 E-value=1.5e-05 Score=86.84 Aligned_cols=195 Identities=23% Similarity=0.331 Sum_probs=110.6
Q ss_pred CccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHh---CCeeEEEecccchh
Q 004267 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLT 553 (764)
Q Consensus 477 ~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~---~~~~i~v~~~~l~~ 553 (764)
......|+|......++.+.+.... .....|||.|.+||||-.+|++|-..+ +.||+.+||+.+-.
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~VA-----------~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPe 287 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEVVA-----------KSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPE 287 (550)
T ss_pred hcccccceecCHHHHHHHHHHHHHh-----------cCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccch
Confidence 4455678888877777666554311 223459999999999999999998875 67999999975531
Q ss_pred -----cccCc----chH---HHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHh-----hcCCC
Q 004267 554 -----MWFGE----SEA---NVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTE-----MDGMS 616 (764)
Q Consensus 554 -----~~~g~----se~---~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~-----ld~~~ 616 (764)
..+|. .-. .-+--|+.|... -+|+|||..+.- .+-..||.. ++.+.
T Consensus 288 sLlESELFGHeKGAFTGA~~~r~GrFElAdGG---TLFLDEIGelPL--------------~lQaKLLRvLQegEieRvG 350 (550)
T COG3604 288 SLLESELFGHEKGAFTGAINTRRGRFELADGG---TLFLDEIGELPL--------------ALQAKLLRVLQEGEIERVG 350 (550)
T ss_pred HHHHHHHhcccccccccchhccCcceeecCCC---eEechhhccCCH--------------HHHHHHHHHHhhcceeecC
Confidence 11221 111 112345555444 899999977632 233334433 33332
Q ss_pred CCC----cEEEEecCCCCCCCCccCCCCCccce-------E--EeecCCCH--HHHHHHHHHHh----ccCCCC-Ccc--
Q 004267 617 AKK----TVFIIGATNRPDIIDPALLRPGRLDQ-------L--IYIPLPDE--DSRHQIFKACL----RKSPVS-KDV-- 674 (764)
Q Consensus 617 ~~~----~v~vi~aTn~~~~ld~allrpgRf~~-------~--i~~~~p~~--~~r~~Il~~~~----~~~~~~-~~~-- 674 (764)
+.+ .|=||+|||+- |..+.. -|+|-. + |++||.-+ +..--+.+.++ ++.+.. ...
T Consensus 351 ~~r~ikVDVRiIAATNRD--L~~~V~-~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~ 427 (550)
T COG3604 351 GDRTIKVDVRVIAATNRD--LEEMVR-DGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSA 427 (550)
T ss_pred CCceeEEEEEEEeccchh--HHHHHH-cCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCH
Confidence 222 58899999973 222222 244332 2 22333211 11122223333 333331 112
Q ss_pred -cHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q 004267 675 -DLRALAKYTQGFSGADITEICQRACKYA 702 (764)
Q Consensus 675 -~l~~la~~~~g~sg~di~~~~~~a~~~a 702 (764)
-++.|.++.---+-++++++++.|+..|
T Consensus 428 ~Al~~L~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 428 EALELLSSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred HHHHHHHcCCCCCcHHHHHHHHHHHHHHh
Confidence 2444555443447799999999999988
No 497
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=98.02 E-value=8.3e-06 Score=88.84 Aligned_cols=31 Identities=35% Similarity=0.544 Sum_probs=27.7
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANET 266 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l 266 (764)
++.+.+++.+.|.||+|||||||+++||+..
T Consensus 26 sl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~ 56 (351)
T PRK11432 26 NLTIKQGTMVTLLGPSGCGKTTVLRLVAGLE 56 (351)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHHCCC
Confidence 3456788999999999999999999999876
No 498
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=98.02 E-value=1.1e-05 Score=83.28 Aligned_cols=31 Identities=29% Similarity=0.476 Sum_probs=27.7
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANET 266 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l 266 (764)
++.+.+++.+.|.||+|+|||||+++|++..
T Consensus 21 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 21 SFTVRPGEFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3457889999999999999999999999875
No 499
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.02 E-value=1.2e-05 Score=81.43 Aligned_cols=31 Identities=32% Similarity=0.398 Sum_probs=27.7
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANET 266 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l 266 (764)
++.+.+++.+.|.||+|||||||++.|++.+
T Consensus 20 ~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 20 SFSVEKGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4567889999999999999999999999875
No 500
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.02 E-value=3e-05 Score=81.15 Aligned_cols=121 Identities=17% Similarity=0.197 Sum_probs=79.6
Q ss_pred CCCcceeeeCCCCCChhHHHHHHHHHhCCee--------EEEecccchhcc-cCc----chHHHHHHHHHHh----hCCC
Q 004267 513 SPSKGVLFYGPPGCGKTLLAKAIANECQANF--------ISVKGPELLTMW-FGE----SEANVREIFDKAR----QSAP 575 (764)
Q Consensus 513 ~~~~gill~GppGtGKT~lak~lA~~~~~~~--------i~v~~~~l~~~~-~g~----se~~i~~~f~~a~----~~~p 575 (764)
+.+..+||+||.|+||+++|.++|..+-+.- -.-.-||+.--+ .|. +-..+|++-+.+. ....
T Consensus 17 rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~ 96 (290)
T PRK05917 17 KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPY 96 (290)
T ss_pred CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCc
Confidence 3445699999999999999999998642210 000112221000 011 2345566555543 3445
Q ss_pred eEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCCCCCccCCCCCccceEEeecCC
Q 004267 576 CVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLP 652 (764)
Q Consensus 576 ~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p 652 (764)
.|++||++|.+- ...-|.||..|+. +..++++|..|+.++.|-|.+++ |+. .+.|+++
T Consensus 97 kv~ii~~ad~mt--------------~~AaNaLLK~LEE--Pp~~~~fiL~~~~~~~ll~TI~S--Rcq-~~~~~~~ 154 (290)
T PRK05917 97 KIYIIHEADRMT--------------LDAISAFLKVLED--PPQHGVIILTSAKPQRLPPTIRS--RSL-SIHIPME 154 (290)
T ss_pred eEEEEechhhcC--------------HHHHHHHHHHhhc--CCCCeEEEEEeCChhhCcHHHHh--cce-EEEccch
Confidence 799999999973 3456889999986 45577778888888999888887 875 6777755
Done!