Query 004267
Match_columns 764
No_of_seqs 709 out of 5094
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 19:41:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004267.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004267hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cf2_A TER ATPase, transitiona 100.0 2E-132 5E-137 1166.5 51.6 752 11-763 6-758 (806)
2 1ypw_A Transitional endoplasmi 100.0 7E-105 2E-109 952.0 38.3 754 9-763 4-758 (806)
3 3hu3_A Transitional endoplasmi 100.0 1.9E-65 6.4E-70 577.4 44.6 481 9-489 4-485 (489)
4 4b4t_J 26S protease regulatory 100.0 4.7E-58 1.6E-62 495.9 21.6 264 463-752 130-393 (405)
5 4b4t_I 26S protease regulatory 100.0 3.8E-56 1.3E-60 481.3 23.1 261 470-757 171-431 (437)
6 4b4t_M 26S protease regulatory 100.0 1.1E-54 3.8E-59 477.2 24.3 264 465-755 165-428 (434)
7 4b4t_L 26S protease subunit RP 100.0 1.6E-54 5.6E-59 476.3 23.8 262 465-752 165-426 (437)
8 4b4t_H 26S protease regulatory 100.0 1.2E-54 4E-59 474.2 21.8 255 472-752 200-454 (467)
9 4b4t_K 26S protease regulatory 100.0 4E-53 1.4E-57 464.7 23.9 259 471-756 162-422 (428)
10 4b4t_J 26S protease regulatory 100.0 3.2E-46 1.1E-50 403.6 27.3 249 200-465 140-391 (405)
11 4b4t_I 26S protease regulatory 100.0 4.1E-45 1.4E-49 395.2 25.6 249 201-466 175-426 (437)
12 3cf2_A TER ATPase, transitiona 100.0 5.6E-46 1.9E-50 435.4 20.3 267 474-752 197-463 (806)
13 4b4t_L 26S protease subunit RP 100.0 2.1E-44 7.3E-49 395.9 26.0 249 201-466 174-425 (437)
14 4b4t_M 26S protease regulatory 100.0 2.7E-44 9.1E-49 394.9 25.1 251 201-468 174-427 (434)
15 3cf0_A Transitional endoplasmi 100.0 7.9E-45 2.7E-49 387.5 19.6 294 468-763 2-296 (301)
16 4b4t_H 26S protease regulatory 100.0 5.3E-44 1.8E-48 390.3 26.0 246 201-463 202-450 (467)
17 2x8a_A Nuclear valosin-contain 100.0 7.1E-45 2.4E-49 381.6 17.7 266 474-758 3-273 (274)
18 4b4t_K 26S protease regulatory 100.0 3.8E-43 1.3E-47 385.6 25.8 245 201-462 165-413 (428)
19 1xwi_A SKD1 protein; VPS4B, AA 100.0 3.4E-42 1.2E-46 370.1 20.8 285 472-763 3-314 (322)
20 3eie_A Vacuolar protein sortin 100.0 1.4E-40 4.7E-45 358.2 18.4 288 470-763 7-313 (322)
21 2qp9_X Vacuolar protein sortin 100.0 1E-39 3.5E-44 355.6 18.2 285 472-763 42-346 (355)
22 2zan_A Vacuolar protein sortin 100.0 3.1E-39 1.1E-43 361.9 16.0 285 472-763 125-436 (444)
23 2ce7_A Cell division protein F 100.0 2.6E-38 8.8E-43 353.2 21.2 250 475-751 10-259 (476)
24 1lv7_A FTSH; alpha/beta domain 100.0 6.5E-37 2.2E-41 318.9 24.1 251 475-752 6-256 (257)
25 3qwz_A Transitional endoplasmi 100.0 3.5E-37 1.2E-41 303.5 20.5 209 2-212 2-211 (211)
26 2x8a_A Nuclear valosin-contain 100.0 2.7E-36 9.2E-41 316.4 22.7 262 202-469 4-270 (274)
27 3h4m_A Proteasome-activating n 100.0 1.9E-36 6.7E-41 320.2 21.2 252 473-750 9-260 (285)
28 2dhr_A FTSH; AAA+ protein, hex 100.0 1.1E-36 3.7E-41 342.0 19.1 250 476-752 26-275 (499)
29 3hu3_A Transitional endoplasmi 100.0 7E-37 2.4E-41 344.7 16.4 264 477-752 200-463 (489)
30 1ixz_A ATP-dependent metallopr 100.0 1.2E-35 4E-40 308.9 19.7 247 472-745 7-253 (254)
31 1xwi_A SKD1 protein; VPS4B, AA 100.0 1.9E-34 6.6E-39 309.7 24.4 227 202-431 6-235 (322)
32 3d8b_A Fidgetin-like protein 1 100.0 2.2E-35 7.4E-40 322.0 16.4 270 474-763 77-349 (357)
33 2qz4_A Paraplegin; AAA+, SPG7, 100.0 2.2E-35 7.6E-40 307.9 14.7 250 476-752 1-253 (262)
34 3b9p_A CG5977-PA, isoform A; A 100.0 2.3E-35 7.9E-40 313.9 14.0 269 474-763 14-287 (297)
35 3tiw_A Transitional endoplasmi 100.0 4E-34 1.4E-38 276.7 20.8 183 10-192 5-187 (187)
36 1r6b_X CLPA protein; AAA+, N-t 100.0 3.5E-34 1.2E-38 343.3 24.6 435 205-708 183-721 (758)
37 3cf0_A Transitional endoplasmi 100.0 3.6E-34 1.2E-38 305.2 21.0 267 201-467 8-285 (301)
38 3pxi_A Negative regulator of g 100.0 1.4E-33 4.7E-38 337.6 26.7 442 204-707 176-729 (758)
39 1iy2_A ATP-dependent metallopr 100.0 6E-34 2.1E-38 300.1 19.5 245 474-745 33-277 (278)
40 2r62_A Cell division protease 100.0 1.2E-35 4.1E-40 311.3 2.4 256 474-756 4-261 (268)
41 3eie_A Vacuolar protein sortin 100.0 5.8E-33 2E-37 298.7 21.1 265 201-468 11-303 (322)
42 3vfd_A Spastin; ATPase, microt 100.0 1.8E-33 6.1E-38 310.8 15.8 264 471-755 105-371 (389)
43 2qp9_X Vacuolar protein sortin 100.0 1.5E-32 5E-37 299.2 22.7 264 202-468 45-336 (355)
44 2ce7_A Cell division protein F 100.0 5.2E-32 1.8E-36 302.3 21.0 227 202-429 10-239 (476)
45 1qvr_A CLPB protein; coiled co 100.0 3E-32 1E-36 329.4 18.8 455 204-708 166-825 (854)
46 2zan_A Vacuolar protein sortin 100.0 7.1E-32 2.4E-36 302.2 17.8 228 201-431 127-357 (444)
47 1ypw_A Transitional endoplasmi 100.0 1.2E-30 4E-35 311.8 21.2 266 475-752 198-463 (806)
48 3h4m_A Proteasome-activating n 100.0 7E-30 2.4E-34 269.8 23.6 230 201-430 10-242 (285)
49 1lv7_A FTSH; alpha/beta domain 100.0 9.5E-30 3.2E-34 264.7 24.2 228 202-430 6-236 (257)
50 2dhr_A FTSH; AAA+ protein, hex 100.0 1.7E-30 5.9E-35 291.6 18.2 246 203-466 26-274 (499)
51 1ixz_A ATP-dependent metallopr 100.0 1.5E-28 5.2E-33 255.2 25.0 228 201-429 9-239 (254)
52 2qz4_A Paraplegin; AAA+, SPG7, 100.0 2.2E-28 7.6E-33 254.8 20.9 225 204-429 2-232 (262)
53 3b9p_A CG5977-PA, isoform A; A 100.0 1.5E-28 5.2E-33 261.2 19.0 261 201-469 14-278 (297)
54 3d8b_A Fidgetin-like protein 1 100.0 6.1E-28 2.1E-32 263.1 22.3 260 201-468 77-339 (357)
55 1iy2_A ATP-dependent metallopr 100.0 2.9E-27 9.9E-32 248.9 26.0 226 203-429 35-263 (278)
56 2c9o_A RUVB-like 1; hexameric 99.9 1E-28 3.4E-33 278.1 8.4 360 204-748 33-437 (456)
57 3t15_A Ribulose bisphosphate c 99.9 5.9E-28 2E-32 255.8 11.7 176 511-693 32-222 (293)
58 2r62_A Cell division protease 99.9 8E-29 2.8E-33 259.3 4.5 249 202-468 5-258 (268)
59 3vfd_A Spastin; ATPase, microt 99.9 1.2E-26 4.1E-31 256.1 21.8 258 201-466 108-368 (389)
60 1g41_A Heat shock protein HSLU 99.9 5.5E-25 1.9E-29 242.0 19.0 170 208-386 15-189 (444)
61 3cmw_A Protein RECA, recombina 99.9 1.2E-26 4.1E-31 288.4 2.4 203 409-629 965-1217(1706)
62 2c9o_A RUVB-like 1; hexameric 99.9 4.1E-27 1.4E-31 264.9 -5.5 216 476-709 32-281 (456)
63 1cz4_A VCP-like ATPase; double 99.9 3.7E-23 1.3E-27 200.8 18.0 160 29-195 7-178 (185)
64 3t15_A Ribulose bisphosphate c 99.9 8.6E-23 2.9E-27 216.1 14.3 175 237-417 31-222 (293)
65 3syl_A Protein CBBX; photosynt 99.9 1.2E-22 4.1E-27 216.8 9.8 216 480-708 30-268 (309)
66 1g41_A Heat shock protein HSLU 99.8 2.5E-22 8.6E-27 220.9 2.1 169 481-661 15-188 (444)
67 3m6a_A ATP-dependent protease 99.8 3.6E-21 1.2E-25 220.3 5.7 234 477-752 77-345 (543)
68 3uk6_A RUVB-like 2; hexameric 99.8 2.2E-19 7.7E-24 196.3 15.0 220 476-748 39-330 (368)
69 1d2n_A N-ethylmaleimide-sensit 99.8 4.4E-19 1.5E-23 185.7 15.7 177 511-699 60-246 (272)
70 1ofh_A ATP-dependent HSL prote 99.8 1.1E-19 3.6E-24 193.7 11.2 246 481-750 15-301 (310)
71 3hws_A ATP-dependent CLP prote 99.8 1.9E-19 6.6E-24 196.6 9.3 223 482-706 16-326 (363)
72 3syl_A Protein CBBX; photosynt 99.8 4.7E-18 1.6E-22 181.1 16.2 211 209-429 32-265 (309)
73 3pfi_A Holliday junction ATP-d 99.8 5.9E-18 2E-22 182.9 16.9 193 478-703 26-235 (338)
74 1wlf_A PEX1, peroxisome biogen 99.7 1.9E-17 6.7E-22 159.7 15.2 160 29-191 13-177 (179)
75 3cmw_A Protein RECA, recombina 99.7 8.9E-18 3E-22 209.3 12.0 150 204-354 1016-1218(1706)
76 1um8_A ATP-dependent CLP prote 99.7 1.6E-17 5.4E-22 182.3 9.9 246 481-748 21-365 (376)
77 1hqc_A RUVB; extended AAA-ATPa 99.7 1.2E-16 4E-21 171.4 14.3 193 478-702 9-218 (324)
78 2v1u_A Cell division control p 99.7 3.7E-16 1.3E-20 171.4 18.1 223 481-749 19-277 (387)
79 1d2n_A N-ethylmaleimide-sensit 99.7 6.5E-16 2.2E-20 161.5 15.7 195 207-410 32-229 (272)
80 1l8q_A Chromosomal replication 99.7 3.2E-16 1.1E-20 168.2 13.7 170 514-701 36-214 (324)
81 3m6a_A ATP-dependent protease 99.7 2E-16 6.9E-21 181.0 12.0 167 205-389 78-266 (543)
82 4fcw_A Chaperone protein CLPB; 99.7 9.8E-17 3.4E-21 171.0 8.7 208 481-708 17-284 (311)
83 3te6_A Regulatory protein SIR3 99.7 2.2E-16 7.4E-21 167.0 11.2 201 513-747 43-314 (318)
84 2z4s_A Chromosomal replication 99.7 2E-16 6.9E-21 176.5 11.4 174 515-703 130-314 (440)
85 1g8p_A Magnesium-chelatase 38 99.6 4.5E-16 1.5E-20 168.7 12.9 219 475-749 18-323 (350)
86 3pvs_A Replication-associated 99.6 2.4E-16 8.1E-21 175.7 10.8 209 478-752 23-248 (447)
87 3cmu_A Protein RECA, recombina 99.6 1.3E-16 4.6E-21 200.5 9.1 387 226-628 364-867 (2050)
88 1r6b_X CLPA protein; AAA+, N-t 99.6 8.4E-16 2.9E-20 183.9 15.6 225 478-749 183-434 (758)
89 3pxg_A Negative regulator of g 99.6 3.4E-16 1.2E-20 176.2 10.1 184 478-702 177-385 (468)
90 1ofh_A ATP-dependent HSL prote 99.6 2.8E-15 9.6E-20 159.4 16.7 215 208-424 15-271 (310)
91 1sxj_A Activator 1 95 kDa subu 99.6 4E-16 1.4E-20 178.0 10.0 200 477-698 35-252 (516)
92 4akg_A Glutathione S-transfera 99.6 9.5E-15 3.2E-19 189.9 23.2 408 241-671 1266-1795(2695)
93 3uk6_A RUVB-like 2; hexameric 99.6 8.1E-15 2.8E-19 160.0 19.1 201 206-430 42-314 (368)
94 2chg_A Replication factor C sm 99.6 3.8E-15 1.3E-19 149.7 15.2 200 477-746 13-224 (226)
95 3pfi_A Holliday junction ATP-d 99.6 1.8E-14 6.3E-19 155.4 21.0 194 201-424 22-232 (338)
96 3bos_A Putative DNA replicatio 99.6 1.8E-15 6.2E-20 154.4 12.3 181 514-746 51-241 (242)
97 1jbk_A CLPB protein; beta barr 99.6 3.8E-16 1.3E-20 153.2 6.4 158 478-661 19-194 (195)
98 2r44_A Uncharacterized protein 99.6 1.1E-15 3.8E-20 164.5 10.4 155 480-668 26-201 (331)
99 3hws_A ATP-dependent CLP prote 99.6 9.4E-15 3.2E-19 159.3 17.6 220 209-430 16-326 (363)
100 2qby_B CDC6 homolog 3, cell di 99.6 3.6E-15 1.2E-19 163.6 14.4 212 481-749 20-271 (384)
101 3pxi_A Negative regulator of g 99.6 1.3E-15 4.3E-20 182.2 11.1 185 478-703 177-386 (758)
102 1njg_A DNA polymerase III subu 99.6 8.5E-15 2.9E-19 149.0 15.8 184 478-699 20-232 (250)
103 2qby_A CDC6 homolog 1, cell di 99.6 9.9E-15 3.4E-19 159.8 17.1 202 480-704 19-254 (386)
104 4akg_A Glutathione S-transfera 99.6 1.5E-13 5E-18 178.9 29.1 174 512-700 1264-1487(2695)
105 1qvr_A CLPB protein; coiled co 99.6 2.1E-15 7.1E-20 182.3 11.2 201 477-703 166-393 (854)
106 1jbk_A CLPB protein; beta barr 99.6 3.4E-15 1.2E-19 146.3 9.9 160 203-385 17-194 (195)
107 1in4_A RUVB, holliday junction 99.6 6.9E-14 2.4E-18 150.6 18.6 194 479-705 23-233 (334)
108 1hqc_A RUVB; extended AAA-ATPa 99.5 7.3E-14 2.5E-18 149.6 18.0 193 201-422 5-214 (324)
109 3pxg_A Negative regulator of g 99.5 3.6E-14 1.2E-18 159.7 15.2 186 203-426 175-385 (468)
110 3cmu_A Protein RECA, recombina 99.5 3.9E-14 1.3E-18 178.4 16.9 117 511-627 1423-1561(2050)
111 1fnn_A CDC6P, cell division co 99.5 4.6E-14 1.6E-18 154.9 15.5 222 480-752 16-278 (389)
112 1l8q_A Chromosomal replication 99.5 2E-13 6.9E-18 146.3 19.9 195 204-424 7-213 (324)
113 3u61_B DNA polymerase accessor 99.5 1.5E-14 5.1E-19 155.1 10.9 184 478-699 23-220 (324)
114 1sxj_D Activator 1 41 kDa subu 99.5 6.1E-14 2.1E-18 152.0 14.0 187 477-702 33-242 (353)
115 2p65_A Hypothetical protein PF 99.5 7.8E-15 2.7E-19 143.2 5.9 151 478-653 19-187 (187)
116 2z4s_A Chromosomal replication 99.5 2.6E-13 8.9E-18 151.4 18.9 198 204-426 101-313 (440)
117 3nbx_X ATPase RAVA; AAA+ ATPas 99.5 1E-14 3.6E-19 163.9 7.2 173 516-706 42-270 (500)
118 2p65_A Hypothetical protein PF 99.5 3.6E-14 1.2E-18 138.5 9.8 152 204-377 18-187 (187)
119 3vlf_B 26S protease regulatory 99.5 4.8E-14 1.6E-18 120.1 8.1 83 653-762 2-84 (88)
120 3u61_B DNA polymerase accessor 99.5 6.2E-13 2.1E-17 142.5 17.5 179 201-413 19-211 (324)
121 2chq_A Replication factor C sm 99.5 2.5E-13 8.6E-18 144.7 14.2 187 478-699 14-208 (319)
122 3f9v_A Minichromosome maintena 99.5 1.4E-14 4.8E-19 167.1 4.6 223 481-752 295-591 (595)
123 2krk_A 26S protease regulatory 99.5 6.6E-14 2.3E-18 118.4 7.3 77 649-751 8-84 (86)
124 1um8_A ATP-dependent CLP prote 99.5 1.2E-12 4.2E-17 143.2 19.6 219 209-429 22-342 (376)
125 2chg_A Replication factor C sm 99.5 3E-12 1E-16 128.3 20.8 175 202-411 11-197 (226)
126 2v1u_A Cell division control p 99.5 1.2E-12 4.1E-17 143.3 18.7 202 206-426 17-256 (387)
127 4fcw_A Chaperone protein CLPB; 99.5 9.8E-13 3.4E-17 139.9 17.3 202 208-429 17-281 (311)
128 3kw6_A 26S protease regulatory 99.5 1.1E-13 3.9E-18 115.1 7.8 76 650-751 1-76 (78)
129 1sxj_A Activator 1 95 kDa subu 99.5 2.4E-13 8.2E-18 155.0 13.0 196 201-411 32-245 (516)
130 1sxj_B Activator 1 37 kDa subu 99.4 2.4E-13 8.4E-18 145.1 12.2 183 478-699 18-213 (323)
131 3pvs_A Replication-associated 99.4 1.7E-12 5.8E-17 144.6 18.3 185 201-424 19-220 (447)
132 1jr3_A DNA polymerase III subu 99.4 4.5E-13 1.6E-17 146.2 13.0 185 478-700 13-226 (373)
133 3te6_A Regulatory protein SIR3 99.4 6E-13 2E-17 140.6 13.4 159 210-391 22-213 (318)
134 3aji_B S6C, proteasome (prosom 99.4 1.6E-13 5.4E-18 115.8 6.3 75 653-754 2-76 (83)
135 3bos_A Putative DNA replicatio 99.4 5.3E-12 1.8E-16 128.5 18.9 187 205-426 25-224 (242)
136 2qby_B CDC6 homolog 3, cell di 99.4 8.2E-12 2.8E-16 136.8 21.1 192 208-424 20-250 (384)
137 1njg_A DNA polymerase III subu 99.4 1.1E-11 3.7E-16 125.9 19.8 187 202-423 17-232 (250)
138 1iqp_A RFCS; clamp loader, ext 99.4 8.5E-13 2.9E-17 141.1 11.6 184 477-699 21-216 (327)
139 1in4_A RUVB, holliday junction 99.4 2E-11 6.8E-16 131.3 21.4 195 202-426 19-230 (334)
140 2qby_A CDC6 homolog 1, cell di 99.4 1.4E-11 4.8E-16 134.6 20.4 201 206-426 18-252 (386)
141 2bjv_A PSP operon transcriptio 99.4 4.4E-13 1.5E-17 139.3 7.3 194 479-702 4-240 (265)
142 1sxj_E Activator 1 40 kDa subu 99.4 3.2E-12 1.1E-16 138.6 14.3 186 478-701 11-243 (354)
143 2r44_A Uncharacterized protein 99.3 7.9E-12 2.7E-16 134.3 15.5 152 207-391 26-200 (331)
144 1g8p_A Magnesium-chelatase 38 99.3 1.7E-11 5.9E-16 132.4 18.0 159 203-387 19-230 (350)
145 1sxj_D Activator 1 41 kDa subu 99.3 9.8E-12 3.4E-16 134.5 16.1 178 201-413 30-230 (353)
146 1fnn_A CDC6P, cell division co 99.3 3.4E-11 1.2E-15 131.9 20.6 199 206-427 15-255 (389)
147 2chq_A Replication factor C sm 99.3 7.9E-12 2.7E-16 133.1 14.4 180 201-411 10-197 (319)
148 1ojl_A Transcriptional regulat 99.3 1E-12 3.5E-17 139.3 6.8 169 515-702 25-235 (304)
149 1sxj_B Activator 1 37 kDa subu 99.3 2.6E-11 9E-16 129.3 17.6 179 202-415 15-206 (323)
150 1iqp_A RFCS; clamp loader, ext 99.3 5.4E-11 1.8E-15 127.0 19.7 176 201-411 18-205 (327)
151 1sxj_E Activator 1 40 kDa subu 99.3 6.6E-11 2.3E-15 128.1 17.6 178 201-411 7-230 (354)
152 1a5t_A Delta prime, HOLB; zinc 99.3 4.7E-11 1.6E-15 128.4 16.2 159 514-699 23-209 (334)
153 1sxj_C Activator 1 40 kDa subu 99.3 2.4E-12 8.2E-17 138.9 6.1 170 478-685 22-203 (340)
154 3nbx_X ATPase RAVA; AAA+ ATPas 99.3 3.4E-11 1.2E-15 135.3 14.4 151 209-389 23-196 (500)
155 1jr3_A DNA polymerase III subu 99.2 1.6E-10 5.6E-15 125.8 17.9 186 202-422 10-224 (373)
156 2dzn_B 26S protease regulatory 99.2 3.2E-12 1.1E-16 107.3 2.8 75 655-756 1-76 (82)
157 3k1j_A LON protease, ATP-depen 99.2 2.3E-11 7.9E-16 141.2 10.2 132 574-747 201-374 (604)
158 1w5s_A Origin recognition comp 99.2 1.5E-10 5.1E-15 127.9 15.2 179 515-704 50-275 (412)
159 2bjv_A PSP operon transcriptio 99.2 8.2E-11 2.8E-15 122.1 12.2 148 206-381 4-182 (265)
160 3co5_A Putative two-component 99.1 5.9E-12 2E-16 118.0 0.9 112 482-630 5-116 (143)
161 2gno_A DNA polymerase III, gam 99.1 7.4E-11 2.5E-15 124.7 9.2 124 516-665 19-152 (305)
162 1sxj_C Activator 1 40 kDa subu 99.1 1.5E-09 5.3E-14 116.8 19.8 173 201-409 18-203 (340)
163 3n70_A Transport activator; si 99.1 4.2E-11 1.5E-15 112.3 5.9 90 515-630 24-116 (145)
164 3vkg_A Dynein heavy chain, cyt 99.1 1.3E-09 4.5E-14 142.8 20.8 407 241-670 1303-1831(3245)
165 3n70_A Transport activator; si 99.1 1.4E-10 4.9E-15 108.7 7.7 112 209-354 2-116 (145)
166 3co5_A Putative two-component 99.1 1E-10 3.5E-15 109.5 6.2 112 209-354 5-116 (143)
167 1ojl_A Transcriptional regulat 99.1 3.9E-10 1.3E-14 119.4 11.2 145 209-381 3-178 (304)
168 1a5t_A Delta prime, HOLB; zinc 99.0 9.9E-09 3.4E-13 110.1 19.9 165 213-412 7-199 (334)
169 3ec2_A DNA replication protein 99.0 1.7E-09 5.8E-14 105.2 10.3 77 235-313 31-112 (180)
170 3j16_B RLI1P; ribosome recycli 98.9 3.8E-09 1.3E-13 121.4 12.8 28 239-266 100-127 (608)
171 1tf7_A KAIC; homohexamer, hexa 98.9 5.3E-08 1.8E-12 111.0 21.5 116 236-357 32-188 (525)
172 2vhj_A Ntpase P4, P4; non- hyd 98.9 8.3E-10 2.8E-14 115.5 5.6 122 511-637 119-242 (331)
173 3f9v_A Minichromosome maintena 98.9 9.8E-10 3.3E-14 126.7 6.8 163 208-390 295-491 (595)
174 2gno_A DNA polymerase III, gam 98.9 1.2E-08 4.3E-13 107.6 14.3 142 212-389 1-152 (305)
175 1w5s_A Origin recognition comp 98.9 4.1E-08 1.4E-12 108.2 19.0 205 207-426 21-273 (412)
176 2krk_A 26S protease regulatory 98.8 2.8E-09 9.7E-14 89.8 5.2 77 373-466 8-84 (86)
177 3ozx_A RNAse L inhibitor; ATP 98.8 8.4E-09 2.9E-13 117.2 10.6 54 291-356 146-199 (538)
178 2kjq_A DNAA-related protein; s 98.8 3.7E-09 1.3E-13 99.4 5.7 97 241-363 35-137 (149)
179 1svm_A Large T antigen; AAA+ f 98.8 2E-09 6.7E-14 116.6 3.7 119 511-651 165-284 (377)
180 3ec2_A DNA replication protein 98.8 3.6E-09 1.2E-13 102.8 5.0 106 511-631 34-144 (180)
181 3k1j_A LON protease, ATP-depen 98.8 2.2E-08 7.4E-13 116.2 12.2 53 201-268 34-86 (604)
182 3vkg_A Dynein heavy chain, cyt 98.7 7.4E-08 2.5E-12 126.6 17.1 128 242-386 604-750 (3245)
183 3kw6_A 26S protease regulatory 98.7 9.7E-09 3.3E-13 85.1 5.5 73 374-463 1-73 (78)
184 2vhj_A Ntpase P4, P4; non- hyd 98.7 7E-09 2.4E-13 108.5 4.7 120 238-361 119-242 (331)
185 2kjq_A DNAA-related protein; s 98.7 7.7E-09 2.6E-13 97.3 4.5 58 515-587 36-96 (149)
186 3vlf_B 26S protease regulatory 98.7 2.1E-08 7.1E-13 85.1 5.5 74 377-467 2-75 (88)
187 1yqt_A RNAse L inhibitor; ATP- 98.6 5.3E-08 1.8E-12 110.9 9.7 29 238-266 43-71 (538)
188 2iw3_A Elongation factor 3A; a 98.6 1.7E-08 5.7E-13 120.7 5.1 29 236-264 455-483 (986)
189 3bk7_A ABC transporter ATP-bin 98.6 6.1E-08 2.1E-12 111.6 8.9 29 238-266 113-141 (607)
190 3aji_B S6C, proteasome (prosom 98.6 3.6E-08 1.2E-12 82.7 4.7 74 377-467 2-75 (83)
191 2fna_A Conserved hypothetical 98.6 1.3E-06 4.5E-11 93.7 18.0 166 516-696 31-251 (357)
192 2w58_A DNAI, primosome compone 98.5 4.6E-08 1.6E-12 96.8 4.9 69 516-586 55-127 (202)
193 2r2a_A Uncharacterized protein 98.5 1E-07 3.5E-12 93.9 6.8 125 517-654 7-155 (199)
194 3f8t_A Predicted ATPase involv 98.5 8.2E-08 2.8E-12 104.8 6.4 213 483-752 215-487 (506)
195 1svm_A Large T antigen; AAA+ f 98.5 4.5E-08 1.5E-12 105.9 3.9 120 236-375 163-284 (377)
196 2qen_A Walker-type ATPase; unk 98.5 7.4E-06 2.5E-10 87.6 20.5 182 207-412 11-240 (350)
197 2w58_A DNAI, primosome compone 98.4 1.8E-07 6.1E-12 92.4 6.6 71 242-314 54-128 (202)
198 2fna_A Conserved hypothetical 98.4 5.9E-06 2E-10 88.6 18.3 179 206-412 11-244 (357)
199 1ny5_A Transcriptional regulat 98.4 2.8E-07 9.6E-12 100.8 7.7 166 516-701 161-369 (387)
200 3ux8_A Excinuclease ABC, A sub 98.4 1.1E-07 3.8E-12 111.7 4.5 23 237-259 39-61 (670)
201 1ye8_A Protein THEP1, hypothet 98.4 2.2E-06 7.4E-11 82.9 12.1 26 244-269 2-27 (178)
202 2qgz_A Helicase loader, putati 98.4 1.2E-07 4.2E-12 100.2 3.0 70 515-586 152-226 (308)
203 2qen_A Walker-type ATPase; unk 98.3 4.6E-06 1.6E-10 89.3 15.0 166 516-696 32-247 (350)
204 2r2a_A Uncharacterized protein 98.3 6E-07 2.1E-11 88.4 6.6 126 243-378 6-155 (199)
205 3dzd_A Transcriptional regulat 98.3 1.1E-06 3.7E-11 95.4 9.2 167 516-701 153-360 (368)
206 2jv2_A Putative uncharacterize 98.3 3.1E-06 1.1E-10 69.8 9.6 71 115-191 11-81 (83)
207 2dzn_B 26S protease regulatory 98.2 3.2E-07 1.1E-11 76.6 2.4 69 379-464 1-69 (82)
208 4g1u_C Hemin import ATP-bindin 98.2 9.5E-07 3.2E-11 91.2 6.4 32 236-267 31-62 (266)
209 3rlf_A Maltose/maltodextrin im 98.2 1.1E-06 3.8E-11 94.8 6.3 109 236-354 23-194 (381)
210 3gfo_A Cobalt import ATP-bindi 98.2 9.1E-07 3.1E-11 91.7 5.5 32 236-267 28-59 (275)
211 1qcs_A N-ethylmaleimide sensit 98.2 1.5E-05 5.2E-10 78.7 13.7 152 31-190 10-190 (211)
212 1cr5_A SEC18P (residues 22 - 2 98.2 3.4E-05 1.2E-09 74.8 15.9 150 30-190 7-186 (189)
213 2qgz_A Helicase loader, putati 98.2 7.4E-07 2.5E-11 94.2 4.1 71 241-313 151-226 (308)
214 4gp7_A Metallophosphoesterase; 98.2 2E-06 6.9E-11 82.6 6.5 25 237-261 4-28 (171)
215 3fvq_A Fe(3+) IONS import ATP- 98.2 1.7E-06 5.9E-11 92.6 6.4 32 236-267 24-55 (359)
216 3tif_A Uncharacterized ABC tra 98.2 1.6E-06 5.5E-11 87.8 5.9 32 236-267 25-56 (235)
217 1ye8_A Protein THEP1, hypothet 98.1 8.3E-06 2.8E-10 78.8 10.5 24 518-541 3-26 (178)
218 3tui_C Methionine import ATP-b 98.1 1.8E-06 6.2E-11 92.5 6.0 32 236-267 48-79 (366)
219 1n0w_A DNA repair protein RAD5 98.1 4.1E-06 1.4E-10 84.9 8.2 118 238-355 20-175 (243)
220 1tue_A Replication protein E1; 98.1 4.2E-06 1.4E-10 81.6 7.6 34 238-271 54-87 (212)
221 1tue_A Replication protein E1; 98.1 1.6E-06 5.4E-11 84.6 4.6 110 512-652 55-179 (212)
222 2yyz_A Sugar ABC transporter, 98.1 2.2E-06 7.6E-11 92.0 6.2 32 236-267 23-54 (359)
223 2it1_A 362AA long hypothetical 98.1 2.3E-06 8E-11 91.9 6.3 32 236-267 23-54 (362)
224 1z47_A CYSA, putative ABC-tran 98.1 1.9E-06 6.6E-11 92.2 5.5 32 236-267 35-66 (355)
225 4a74_A DNA repair and recombin 98.1 5E-06 1.7E-10 83.4 7.7 29 238-266 21-49 (231)
226 2w0m_A SSO2452; RECA, SSPF, un 98.1 8.3E-06 2.8E-10 81.9 9.2 109 238-354 19-168 (235)
227 1g6h_A High-affinity branched- 98.1 4.7E-06 1.6E-10 85.6 7.4 31 237-267 28-58 (257)
228 1vpl_A ABC transporter, ATP-bi 98.1 4.6E-06 1.6E-10 85.5 6.8 32 236-267 35-66 (256)
229 2ehv_A Hypothetical protein PH 98.0 1.2E-05 4E-10 81.8 9.9 26 238-263 26-51 (251)
230 1v43_A Sugar-binding transport 98.0 2.4E-06 8.1E-11 92.2 4.7 32 236-267 31-62 (372)
231 2pcj_A ABC transporter, lipopr 98.0 2.8E-06 9.6E-11 85.4 4.9 32 236-267 24-55 (224)
232 1ny5_A Transcriptional regulat 98.0 2E-05 6.7E-10 86.1 11.7 120 209-354 138-282 (387)
233 3d31_A Sulfate/molybdate ABC t 98.0 3.1E-06 1.1E-10 90.5 4.9 32 236-267 20-51 (348)
234 2cvh_A DNA repair and recombin 98.0 1.2E-05 4.2E-10 79.9 8.7 39 238-276 16-54 (220)
235 2olj_A Amino acid ABC transpor 98.0 6.9E-06 2.4E-10 84.5 6.6 32 236-267 44-75 (263)
236 1g29_1 MALK, maltose transport 98.0 4.4E-06 1.5E-10 90.2 5.4 32 236-267 23-54 (372)
237 2onk_A Molybdate/tungstate ABC 98.0 3.2E-06 1.1E-10 85.9 3.8 31 236-267 19-49 (240)
238 3hr8_A Protein RECA; alpha and 97.9 2.8E-05 9.7E-10 83.2 10.7 113 238-350 57-194 (356)
239 2ff7_A Alpha-hemolysin translo 97.9 8.1E-06 2.8E-10 83.3 5.9 32 236-267 29-60 (247)
240 2ixe_A Antigen peptide transpo 97.9 1.5E-05 5E-10 82.5 7.7 32 236-267 39-70 (271)
241 3gd7_A Fusion complex of cysti 97.9 1E-05 3.5E-10 87.8 6.6 31 236-266 41-71 (390)
242 2nq2_C Hypothetical ABC transp 97.9 7.4E-06 2.5E-10 83.9 5.1 32 236-267 25-56 (253)
243 1oxx_K GLCV, glucose, ABC tran 97.9 3.8E-06 1.3E-10 90.1 3.0 32 236-267 25-56 (353)
244 2yz2_A Putative ABC transporte 97.9 1.3E-05 4.5E-10 82.7 6.9 32 236-267 27-58 (266)
245 1sgw_A Putative ABC transporte 97.9 5.2E-06 1.8E-10 82.7 3.6 31 237-267 30-60 (214)
246 1pzn_A RAD51, DNA repair and r 97.9 1.7E-05 5.8E-10 85.2 7.5 41 237-277 126-175 (349)
247 2qi9_C Vitamin B12 import ATP- 97.9 1.2E-05 4.2E-10 81.9 5.8 32 236-267 20-51 (249)
248 2ehv_A Hypothetical protein PH 97.8 8.4E-05 2.9E-09 75.4 12.0 129 511-650 26-206 (251)
249 1ji0_A ABC transporter; ATP bi 97.8 1E-05 3.5E-10 82.2 4.9 32 236-267 26-57 (240)
250 2ghi_A Transport protein; mult 97.8 2E-05 6.8E-10 81.0 6.9 32 236-267 40-71 (260)
251 2cbz_A Multidrug resistance-as 97.8 2E-05 6.7E-10 79.9 6.7 31 236-266 25-55 (237)
252 2d2e_A SUFC protein; ABC-ATPas 97.8 1.7E-05 5.8E-10 81.1 6.3 30 236-265 23-52 (250)
253 1b0u_A Histidine permease; ABC 97.8 1.5E-05 5.2E-10 82.0 5.9 32 236-267 26-57 (262)
254 3lda_A DNA repair protein RAD5 97.8 2.5E-05 8.6E-10 85.2 7.9 116 238-353 174-327 (400)
255 2zr9_A Protein RECA, recombina 97.8 1.8E-05 6.3E-10 84.8 6.7 78 238-315 57-153 (349)
256 1v5w_A DMC1, meiotic recombina 97.8 5.1E-05 1.7E-09 81.4 10.1 116 238-353 118-273 (343)
257 2cvh_A DNA repair and recombin 97.8 3.6E-05 1.2E-09 76.5 8.4 40 511-550 16-55 (220)
258 3hr8_A Protein RECA; alpha and 97.8 4.4E-05 1.5E-09 81.7 9.5 116 511-626 57-194 (356)
259 3jvv_A Twitching mobility prot 97.8 2.2E-05 7.5E-10 84.3 7.1 72 240-311 121-206 (356)
260 3nh6_A ATP-binding cassette SU 97.8 1.7E-05 5.8E-10 83.3 6.0 32 236-267 74-105 (306)
261 1zc1_A Ubiquitin fusion degrad 97.8 0.00047 1.6E-08 66.6 15.4 142 41-189 45-196 (208)
262 2pjz_A Hypothetical protein ST 97.8 3E-05 1E-09 79.8 7.5 30 236-266 25-54 (263)
263 2eyu_A Twitching motility prot 97.8 1.4E-05 4.6E-10 82.3 4.8 79 233-311 16-108 (261)
264 2ihy_A ABC transporter, ATP-bi 97.8 8.3E-06 2.8E-10 84.7 3.1 31 237-267 42-72 (279)
265 1xp8_A RECA protein, recombina 97.8 6.5E-05 2.2E-09 81.0 10.0 115 238-352 70-209 (366)
266 2yuj_A Ubiquitin fusion degrad 97.8 0.00051 1.7E-08 65.5 14.8 143 40-187 39-186 (190)
267 1n0w_A DNA repair protein RAD5 97.8 4.2E-05 1.4E-09 77.3 7.9 78 511-588 20-133 (243)
268 2zu0_C Probable ATP-dependent 97.7 3.7E-05 1.3E-09 79.3 7.4 30 236-265 40-69 (267)
269 2z43_A DNA repair and recombin 97.7 3.7E-05 1.3E-09 81.7 7.6 115 238-352 103-256 (324)
270 1u0j_A DNA replication protein 97.7 2.8E-05 9.6E-10 79.3 6.3 27 515-541 104-130 (267)
271 3dzd_A Transcriptional regulat 97.7 0.00027 9.3E-09 76.4 14.1 120 209-353 130-272 (368)
272 2zr9_A Protein RECA, recombina 97.7 2.3E-05 8E-10 84.0 5.6 78 511-588 57-153 (349)
273 1jr3_D DNA polymerase III, del 97.7 0.00024 8.1E-09 76.0 13.2 159 514-700 17-190 (343)
274 1mv5_A LMRA, multidrug resista 97.7 1.5E-05 5.1E-10 81.1 2.8 31 236-266 22-52 (243)
275 2pze_A Cystic fibrosis transme 97.7 7.5E-05 2.6E-09 75.1 7.9 32 236-267 28-59 (229)
276 1xp8_A RECA protein, recombina 97.7 8.9E-05 3E-09 79.9 8.9 117 511-627 70-208 (366)
277 1u94_A RECA protein, recombina 97.7 9.2E-05 3.2E-09 79.5 9.0 78 238-315 59-155 (356)
278 2w0m_A SSO2452; RECA, SSPF, un 97.6 4.7E-05 1.6E-09 76.2 5.7 37 511-547 19-58 (235)
279 1qhx_A CPT, protein (chloramph 97.6 0.00018 6.3E-09 68.8 9.3 37 242-278 3-39 (178)
280 4a74_A DNA repair and recombin 97.6 3.8E-05 1.3E-09 76.9 4.5 79 511-589 21-140 (231)
281 3io5_A Recombination and repai 97.6 0.00014 4.8E-09 75.7 8.7 78 238-316 25-126 (333)
282 3ozx_A RNAse L inhibitor; ATP 97.5 4.7E-05 1.6E-09 86.4 5.0 109 237-355 289-447 (538)
283 3qf4_B Uncharacterized ABC tra 97.5 9.6E-05 3.3E-09 85.3 7.6 32 236-267 375-406 (598)
284 4a82_A Cystic fibrosis transme 97.5 8.8E-05 3E-09 85.3 7.1 32 236-267 361-392 (578)
285 1cr0_A DNA primase/helicase; R 97.5 0.00017 5.8E-09 75.5 8.5 30 237-266 30-59 (296)
286 3b5x_A Lipid A export ATP-bind 97.5 3.8E-05 1.3E-09 88.5 3.6 32 236-267 363-394 (582)
287 3vaa_A Shikimate kinase, SK; s 97.5 7.3E-05 2.5E-09 73.4 5.1 37 237-273 20-56 (199)
288 1nlf_A Regulatory protein REPA 97.5 0.00018 6E-09 74.7 8.2 29 238-266 26-54 (279)
289 3b60_A Lipid A export ATP-bind 97.5 0.00015 5.2E-09 83.4 8.0 32 236-267 363-394 (582)
290 3fvq_A Fe(3+) IONS import ATP- 97.5 1.6E-05 5.6E-10 85.0 -0.2 45 506-550 19-67 (359)
291 2pt7_A CAG-ALFA; ATPase, prote 97.5 3.1E-05 1.1E-09 82.5 1.9 74 239-312 168-251 (330)
292 1zp6_A Hypothetical protein AT 97.4 6.7E-05 2.3E-09 72.8 4.1 41 238-278 5-45 (191)
293 1u94_A RECA protein, recombina 97.4 0.00011 3.7E-09 78.9 6.0 117 511-627 59-197 (356)
294 3thx_B DNA mismatch repair pro 97.4 0.00018 6.3E-09 86.0 8.0 29 237-265 668-696 (918)
295 2ewv_A Twitching motility prot 97.4 0.0001 3.4E-09 79.9 5.3 81 231-311 125-219 (372)
296 4g1u_C Hemin import ATP-bindin 97.4 6.9E-05 2.4E-09 77.2 3.7 44 506-549 26-73 (266)
297 3f8t_A Predicted ATPase involv 97.4 7.7E-05 2.6E-09 81.6 4.2 118 244-380 241-385 (506)
298 3qf4_A ABC transporter, ATP-bi 97.4 0.00019 6.6E-09 82.6 7.8 32 236-267 363-394 (587)
299 2eyu_A Twitching motility prot 97.4 0.00017 5.7E-09 74.1 6.4 79 506-584 16-108 (261)
300 1pzn_A RAD51, DNA repair and r 97.4 0.00016 5.6E-09 77.5 6.3 41 510-550 126-175 (349)
301 1v5w_A DMC1, meiotic recombina 97.4 0.00025 8.7E-09 75.9 7.6 115 511-628 118-272 (343)
302 2bbs_A Cystic fibrosis transme 97.4 0.0002 6.9E-09 74.6 6.5 32 236-267 58-89 (290)
303 2z43_A DNA repair and recombin 97.3 0.00013 4.6E-09 77.4 5.0 114 511-627 103-255 (324)
304 1z6t_A APAF-1, apoptotic prote 97.3 0.0025 8.5E-08 73.4 16.1 46 208-264 124-169 (591)
305 2i1q_A DNA repair and recombin 97.3 0.00023 7.9E-09 75.5 6.7 28 238-265 94-121 (322)
306 2dr3_A UPF0273 protein PH0284; 97.3 0.0016 5.5E-08 65.6 12.4 38 238-275 19-59 (247)
307 1qhx_A CPT, protein (chloramph 97.3 0.00037 1.3E-08 66.6 7.2 34 516-549 4-37 (178)
308 3io5_A Recombination and repai 97.3 0.00049 1.7E-08 71.7 8.2 115 511-626 25-168 (333)
309 3rlf_A Maltose/maltodextrin im 97.3 0.00017 5.9E-09 77.6 5.0 45 506-550 18-66 (381)
310 3lda_A DNA repair protein RAD5 97.3 0.00018 6.3E-09 78.3 5.2 116 511-629 174-327 (400)
311 2p5t_B PEZT; postsegregational 97.2 0.00055 1.9E-08 69.9 8.2 40 239-278 29-68 (253)
312 1zp6_A Hypothetical protein AT 97.2 0.00014 4.9E-09 70.5 3.5 39 513-551 7-45 (191)
313 1kag_A SKI, shikimate kinase I 97.2 0.00021 7.3E-09 68.0 4.7 30 242-271 4-33 (173)
314 3gfo_A Cobalt import ATP-bindi 97.2 0.00016 5.4E-09 74.8 3.9 45 506-550 23-71 (275)
315 3vaa_A Shikimate kinase, SK; s 97.2 0.00018 6.1E-09 70.6 3.8 33 514-546 24-56 (199)
316 3trf_A Shikimate kinase, SK; a 97.2 0.00027 9.2E-09 68.1 4.9 32 242-273 5-36 (185)
317 2rhm_A Putative kinase; P-loop 97.2 0.00029 9.8E-09 68.3 5.1 34 239-272 2-35 (193)
318 1htw_A HI0065; nucleotide-bind 97.2 0.00025 8.4E-09 66.9 4.5 31 236-266 27-57 (158)
319 3bk7_A ABC transporter ATP-bin 97.2 0.00012 4E-09 84.3 2.7 28 239-266 379-406 (607)
320 3uie_A Adenylyl-sulfate kinase 97.2 0.00079 2.7E-08 65.9 8.3 39 240-278 23-64 (200)
321 1yqt_A RNAse L inhibitor; ATP- 97.2 0.00014 4.9E-09 82.5 3.3 107 239-355 309-463 (538)
322 3thx_A DNA mismatch repair pro 97.2 0.00052 1.8E-08 82.4 8.0 26 239-264 659-684 (934)
323 2yl4_A ATP-binding cassette SU 97.2 0.00033 1.1E-08 80.8 6.1 32 236-267 364-395 (595)
324 3jvv_A Twitching mobility prot 97.1 0.0005 1.7E-08 73.7 7.0 72 513-584 121-206 (356)
325 1y63_A LMAJ004144AAA protein; 97.1 0.00024 8.1E-09 68.7 4.0 33 239-271 7-40 (184)
326 2r6a_A DNAB helicase, replicat 97.1 0.00084 2.9E-08 74.7 8.9 37 238-274 199-239 (454)
327 3j16_B RLI1P; ribosome recycli 97.1 0.00049 1.7E-08 79.0 7.2 25 242-266 378-402 (608)
328 4eun_A Thermoresistant glucoki 97.1 0.00037 1.3E-08 68.3 5.3 37 240-278 27-63 (200)
329 4f4c_A Multidrug resistance pr 97.1 0.00052 1.8E-08 86.3 7.8 32 236-267 1099-1130(1321)
330 2orw_A Thymidine kinase; TMTK, 97.1 0.00017 5.9E-09 69.9 2.6 67 518-586 6-88 (184)
331 1z47_A CYSA, putative ABC-tran 97.1 0.00048 1.6E-08 73.6 6.3 43 507-549 31-77 (355)
332 4f4c_A Multidrug resistance pr 97.1 0.00032 1.1E-08 88.1 5.7 46 506-551 1094-1143(1321)
333 1gvn_B Zeta; postsegregational 97.1 0.0016 5.6E-08 67.7 10.1 39 240-278 31-69 (287)
334 2b8t_A Thymidine kinase; deoxy 97.1 0.00092 3.2E-08 66.6 7.8 73 241-314 11-102 (223)
335 2orw_A Thymidine kinase; TMTK, 97.1 0.00074 2.5E-08 65.3 6.9 24 242-265 3-26 (184)
336 3tui_C Methionine import ATP-b 97.1 0.00048 1.7E-08 73.7 5.8 45 506-550 43-91 (366)
337 1knq_A Gluconate kinase; ALFA/ 97.1 0.00046 1.6E-08 65.9 5.2 36 241-278 7-42 (175)
338 3iij_A Coilin-interacting nucl 97.1 0.00051 1.7E-08 65.9 5.4 33 240-272 9-41 (180)
339 3trf_A Shikimate kinase, SK; a 97.0 0.00038 1.3E-08 67.1 4.3 32 515-546 5-36 (185)
340 3a4m_A L-seryl-tRNA(SEC) kinas 97.0 0.0015 5.2E-08 66.9 9.1 38 242-279 4-44 (260)
341 2i3b_A HCR-ntpase, human cance 97.0 0.0007 2.4E-08 65.8 5.9 135 518-668 4-187 (189)
342 1via_A Shikimate kinase; struc 97.0 0.00045 1.5E-08 66.0 4.5 29 244-272 6-34 (175)
343 3kb2_A SPBC2 prophage-derived 97.0 0.00046 1.6E-08 65.4 4.5 31 244-274 3-33 (173)
344 1nlf_A Regulatory protein REPA 97.0 0.00057 2E-08 70.8 5.5 29 511-539 26-54 (279)
345 3sfz_A APAF-1, apoptotic pepti 97.0 0.0053 1.8E-07 76.9 15.4 168 207-411 123-321 (1249)
346 1z6t_A APAF-1, apoptotic prote 97.0 0.003 1E-07 72.7 12.0 145 516-692 148-325 (591)
347 2ewv_A Twitching motility prot 97.0 0.00062 2.1E-08 73.6 5.7 79 506-584 127-219 (372)
348 1kag_A SKI, shikimate kinase I 97.0 0.0005 1.7E-08 65.4 4.4 29 516-544 5-33 (173)
349 4gp7_A Metallophosphoesterase; 97.0 0.0002 6.7E-09 68.5 1.5 20 515-534 9-28 (171)
350 1vma_A Cell division protein F 97.0 0.0019 6.6E-08 67.6 9.3 73 239-311 101-196 (306)
351 3cm0_A Adenylate kinase; ATP-b 96.9 0.00052 1.8E-08 66.1 4.4 30 242-271 4-33 (186)
352 2p5t_B PEZT; postsegregational 96.9 0.0011 3.9E-08 67.5 7.2 37 515-551 32-68 (253)
353 2pez_A Bifunctional 3'-phospho 96.9 0.00078 2.7E-08 64.6 5.5 38 241-278 4-44 (179)
354 3tr0_A Guanylate kinase, GMP k 96.9 0.0005 1.7E-08 67.3 4.3 29 239-267 4-32 (205)
355 2rhm_A Putative kinase; P-loop 96.9 0.00052 1.8E-08 66.5 4.3 32 514-545 4-35 (193)
356 2iut_A DNA translocase FTSK; n 96.9 0.0026 9E-08 71.6 10.4 75 575-662 344-420 (574)
357 3nwj_A ATSK2; P loop, shikimat 96.9 0.00044 1.5E-08 70.4 3.8 31 242-272 48-78 (250)
358 2dr3_A UPF0273 protein PH0284; 96.9 0.0037 1.3E-07 62.8 10.7 38 511-548 19-59 (247)
359 2a5y_B CED-4; apoptosis; HET: 96.9 0.0071 2.4E-07 69.0 14.1 144 211-389 131-306 (549)
360 1zuh_A Shikimate kinase; alpha 96.9 0.00066 2.3E-08 64.3 4.6 31 242-272 7-37 (168)
361 1z6g_A Guanylate kinase; struc 96.9 0.00049 1.7E-08 68.5 3.8 32 236-267 17-48 (218)
362 2iyv_A Shikimate kinase, SK; t 96.9 0.00069 2.4E-08 65.2 4.7 30 243-272 3-32 (184)
363 1u0j_A DNA replication protein 96.9 0.00063 2.2E-08 69.4 4.5 29 240-268 102-130 (267)
364 3dm5_A SRP54, signal recogniti 96.9 0.0071 2.4E-07 66.3 13.1 71 241-311 99-192 (443)
365 3umf_A Adenylate kinase; rossm 96.9 0.00089 3.1E-08 66.4 5.4 39 239-279 26-64 (217)
366 2cdn_A Adenylate kinase; phosp 96.9 0.00088 3E-08 65.6 5.2 33 241-273 19-51 (201)
367 3t61_A Gluconokinase; PSI-biol 96.9 0.00081 2.8E-08 65.9 5.0 31 242-272 18-48 (202)
368 1tev_A UMP-CMP kinase; ploop, 96.9 0.00085 2.9E-08 64.9 5.1 30 242-271 3-32 (196)
369 1via_A Shikimate kinase; struc 96.8 0.00067 2.3E-08 64.8 4.2 29 517-545 6-34 (175)
370 1aky_A Adenylate kinase; ATP:A 96.8 0.00088 3E-08 66.6 5.3 32 241-272 3-34 (220)
371 2c95_A Adenylate kinase 1; tra 96.8 0.00081 2.8E-08 65.2 4.8 33 241-273 8-40 (196)
372 3iij_A Coilin-interacting nucl 96.8 0.00069 2.4E-08 65.0 4.2 32 515-546 11-42 (180)
373 3kb2_A SPBC2 prophage-derived 96.8 0.00066 2.3E-08 64.3 4.1 31 517-547 3-33 (173)
374 2ius_A DNA translocase FTSK; n 96.8 0.0033 1.1E-07 70.3 10.2 77 574-663 296-375 (512)
375 1wb9_A DNA mismatch repair pro 96.8 0.0022 7.6E-08 75.9 9.2 26 240-265 605-630 (800)
376 3sfz_A APAF-1, apoptotic pepti 96.8 0.0066 2.3E-07 76.0 14.2 165 482-686 125-320 (1249)
377 2ze6_A Isopentenyl transferase 96.8 0.00068 2.3E-08 69.2 4.3 32 244-275 3-34 (253)
378 1znw_A Guanylate kinase, GMP k 96.8 0.00066 2.2E-08 66.9 4.0 30 238-267 16-45 (207)
379 2v9p_A Replication protein E1; 96.8 0.00073 2.5E-08 70.6 4.5 34 236-269 120-153 (305)
380 2pt7_A CAG-ALFA; ATPase, prote 96.8 0.00076 2.6E-08 71.7 4.6 73 513-585 169-251 (330)
381 3g5u_A MCG1178, multidrug resi 96.8 0.0011 3.8E-08 83.0 6.8 32 236-267 410-441 (1284)
382 2i1q_A DNA repair and recombin 96.8 0.00078 2.7E-08 71.3 4.6 113 511-626 94-255 (322)
383 2ius_A DNA translocase FTSK; n 96.8 0.0044 1.5E-07 69.3 10.8 76 301-386 296-374 (512)
384 3g5u_A MCG1178, multidrug resi 96.8 0.00081 2.8E-08 84.2 5.4 30 237-266 1054-1083(1284)
385 3crm_A TRNA delta(2)-isopenten 96.8 0.0027 9.2E-08 66.7 8.5 100 242-351 5-104 (323)
386 2bbw_A Adenylate kinase 4, AK4 96.8 0.00096 3.3E-08 67.6 4.8 31 241-271 26-56 (246)
387 1y63_A LMAJ004144AAA protein; 96.8 0.00073 2.5E-08 65.2 3.7 30 516-545 11-41 (184)
388 1e6c_A Shikimate kinase; phosp 96.8 0.0011 3.6E-08 63.0 4.8 30 243-272 3-32 (173)
389 1kht_A Adenylate kinase; phosp 96.7 0.00091 3.1E-08 64.5 4.4 26 242-267 3-28 (192)
390 3upu_A ATP-dependent DNA helic 96.7 0.0031 1.1E-07 70.2 9.3 23 244-266 47-69 (459)
391 1zd8_A GTP:AMP phosphotransfer 96.7 0.00097 3.3E-08 66.7 4.7 33 240-272 5-37 (227)
392 1ly1_A Polynucleotide kinase; 96.7 0.00074 2.5E-08 64.5 3.6 27 242-268 2-29 (181)
393 3lw7_A Adenylate kinase relate 96.7 0.001 3.5E-08 63.0 4.5 29 244-273 3-31 (179)
394 1tf7_A KAIC; homohexamer, hexa 96.7 0.0027 9.2E-08 72.0 8.7 110 238-354 277-417 (525)
395 2jeo_A Uridine-cytidine kinase 96.7 0.00088 3E-08 67.9 4.3 32 237-268 20-51 (245)
396 2zts_A Putative uncharacterize 96.7 0.0023 7.7E-08 64.6 7.3 37 238-274 26-66 (251)
397 3bh0_A DNAB-like replicative h 96.7 0.0054 1.8E-07 64.6 10.5 37 238-274 64-103 (315)
398 2vli_A Antibiotic resistance p 96.7 0.00071 2.4E-08 64.9 3.4 30 242-271 5-34 (183)
399 1qf9_A UMP/CMP kinase, protein 96.7 0.0014 4.7E-08 63.3 5.3 31 242-272 6-36 (194)
400 2ze6_A Isopentenyl transferase 96.7 0.00088 3E-08 68.3 4.0 31 518-548 4-34 (253)
401 3e1s_A Exodeoxyribonuclease V, 96.7 0.0017 5.9E-08 74.2 6.9 32 242-273 204-238 (574)
402 3tlx_A Adenylate kinase 2; str 96.7 0.0014 4.7E-08 66.5 5.3 33 240-272 27-59 (243)
403 2bwj_A Adenylate kinase 5; pho 96.7 0.0012 4.1E-08 64.2 4.8 31 242-272 12-42 (199)
404 1cke_A CK, MSSA, protein (cyti 96.7 0.0013 4.4E-08 65.6 5.1 30 242-271 5-34 (227)
405 2ga8_A Hypothetical 39.9 kDa p 96.7 0.00063 2.1E-08 72.2 2.8 30 243-272 25-54 (359)
406 2q6t_A DNAB replication FORK h 96.7 0.003 1E-07 70.0 8.5 38 238-275 196-237 (444)
407 1p9r_A General secretion pathw 96.7 0.0029 9.9E-08 69.2 8.2 70 241-311 166-246 (418)
408 3kl4_A SRP54, signal recogniti 96.7 0.0054 1.9E-07 67.2 10.4 72 241-312 96-190 (433)
409 2iyv_A Shikimate kinase, SK; t 96.7 0.0011 3.8E-08 63.7 4.4 29 517-545 4-32 (184)
410 1kgd_A CASK, peripheral plasma 96.7 0.0011 3.8E-08 63.7 4.3 27 241-267 4-30 (180)
411 3uie_A Adenylyl-sulfate kinase 96.7 0.0017 5.8E-08 63.5 5.7 38 514-551 24-64 (200)
412 4aby_A DNA repair protein RECN 96.7 0.0019 6.4E-08 70.9 6.7 30 237-267 56-85 (415)
413 1ak2_A Adenylate kinase isoenz 96.7 0.0015 5.2E-08 65.6 5.4 32 241-272 15-46 (233)
414 2j41_A Guanylate kinase; GMP, 96.7 0.00099 3.4E-08 65.2 4.0 28 239-266 3-30 (207)
415 2px0_A Flagellar biosynthesis 96.7 0.0034 1.1E-07 65.5 8.1 36 240-275 103-142 (296)
416 4eun_A Thermoresistant glucoki 96.6 0.0013 4.3E-08 64.5 4.6 35 515-551 29-63 (200)
417 1zak_A Adenylate kinase; ATP:A 96.6 0.0011 3.7E-08 66.0 4.0 31 241-271 4-34 (222)
418 1ukz_A Uridylate kinase; trans 96.6 0.0016 5.4E-08 63.7 5.1 33 241-273 14-46 (203)
419 3a4m_A L-seryl-tRNA(SEC) kinas 96.6 0.0029 9.9E-08 64.7 7.3 36 517-552 6-44 (260)
420 2oap_1 GSPE-2, type II secreti 96.6 0.00082 2.8E-08 75.6 3.4 91 220-310 236-342 (511)
421 1zuh_A Shikimate kinase; alpha 96.6 0.0012 4E-08 62.6 4.0 31 516-546 8-38 (168)
422 3umf_A Adenylate kinase; rossm 96.6 0.0012 4E-08 65.6 4.1 39 513-553 27-65 (217)
423 2pt5_A Shikimate kinase, SK; a 96.6 0.0016 5.4E-08 61.5 4.8 29 244-272 2-30 (168)
424 3c8u_A Fructokinase; YP_612366 96.6 0.0012 4.1E-08 65.1 4.1 28 240-267 20-47 (208)
425 2iw3_A Elongation factor 3A; a 96.6 0.0023 7.8E-08 76.8 7.2 31 236-266 693-723 (986)
426 3sr0_A Adenylate kinase; phosp 96.6 0.0015 5E-08 64.4 4.7 34 244-279 2-35 (206)
427 3dl0_A Adenylate kinase; phosp 96.6 0.0014 4.7E-08 64.9 4.6 30 244-273 2-31 (216)
428 3thx_B DNA mismatch repair pro 96.6 0.0032 1.1E-07 75.4 8.4 107 516-634 674-800 (918)
429 3fb4_A Adenylate kinase; psych 96.6 0.0015 5E-08 64.6 4.7 30 244-273 2-31 (216)
430 4e22_A Cytidylate kinase; P-lo 96.6 0.0016 5.5E-08 66.3 5.1 32 240-271 25-56 (252)
431 3lw7_A Adenylate kinase relate 96.6 0.0013 4.6E-08 62.1 4.1 29 517-546 3-31 (179)
432 3cm0_A Adenylate kinase; ATP-b 96.6 0.0013 4.4E-08 63.3 4.0 29 517-545 6-34 (186)
433 3be4_A Adenylate kinase; malar 96.6 0.0014 4.9E-08 65.0 4.4 32 242-273 5-36 (217)
434 3e70_C DPA, signal recognition 96.6 0.0074 2.5E-07 63.8 10.1 28 239-266 126-153 (328)
435 1lvg_A Guanylate kinase, GMP k 96.6 0.0012 4E-08 64.7 3.7 27 241-267 3-29 (198)
436 1knq_A Gluconate kinase; ALFA/ 96.6 0.0016 5.4E-08 62.1 4.5 34 516-551 9-42 (175)
437 1aky_A Adenylate kinase; ATP:A 96.5 0.0016 5.4E-08 64.7 4.6 31 516-546 5-35 (220)
438 2iut_A DNA translocase FTSK; n 96.5 0.018 6.2E-07 64.9 13.6 73 303-385 345-419 (574)
439 3t61_A Gluconokinase; PSI-biol 96.5 0.0017 5.7E-08 63.6 4.6 30 516-545 19-48 (202)
440 1e6c_A Shikimate kinase; phosp 96.5 0.0015 5.3E-08 61.9 4.3 29 517-545 4-32 (173)
441 2px0_A Flagellar biosynthesis 96.5 0.0091 3.1E-07 62.2 10.5 25 515-539 105-129 (296)
442 3ux8_A Excinuclease ABC, A sub 96.5 0.00075 2.6E-08 79.0 2.4 27 236-262 342-368 (670)
443 2o8b_B DNA mismatch repair pro 96.5 0.0053 1.8E-07 74.6 9.8 23 242-265 789-811 (1022)
444 2yhs_A FTSY, cell division pro 96.5 0.0058 2E-07 67.7 9.2 30 237-266 288-317 (503)
445 3sr0_A Adenylate kinase; phosp 96.5 0.0015 5.2E-08 64.3 4.2 33 518-552 3-35 (206)
446 2c95_A Adenylate kinase 1; tra 96.5 0.0015 5.1E-08 63.3 4.1 32 515-546 9-40 (196)
447 2cdn_A Adenylate kinase; phosp 96.5 0.0018 6.1E-08 63.3 4.7 30 517-546 22-51 (201)
448 1g5t_A COB(I)alamin adenosyltr 96.5 0.0099 3.4E-07 57.6 9.7 101 517-630 30-163 (196)
449 2b8t_A Thymidine kinase; deoxy 96.5 0.0028 9.4E-08 63.2 5.9 68 518-586 15-101 (223)
450 3asz_A Uridine kinase; cytidin 96.5 0.0015 5.2E-08 64.3 4.0 28 240-267 4-31 (211)
451 1jr3_D DNA polymerase III, del 96.5 0.027 9.3E-07 59.8 14.2 142 242-409 18-176 (343)
452 1tev_A UMP-CMP kinase; ploop, 96.5 0.0017 5.8E-08 62.8 4.3 30 516-545 4-33 (196)
453 1qf9_A UMP/CMP kinase, protein 96.5 0.0018 6.2E-08 62.4 4.4 31 516-546 7-37 (194)
454 1gvn_B Zeta; postsegregational 96.5 0.0017 5.8E-08 67.6 4.4 37 515-551 33-69 (287)
455 2jaq_A Deoxyguanosine kinase; 96.5 0.002 6.9E-08 62.7 4.7 28 244-271 2-29 (205)
456 3be4_A Adenylate kinase; malar 96.5 0.0017 5.7E-08 64.5 4.2 30 517-546 7-36 (217)
457 1zd8_A GTP:AMP phosphotransfer 96.4 0.0017 5.8E-08 64.9 4.1 32 515-546 7-38 (227)
458 3r20_A Cytidylate kinase; stru 96.4 0.0024 8.2E-08 64.0 5.1 30 242-271 9-38 (233)
459 1kht_A Adenylate kinase; phosp 96.4 0.0016 5.3E-08 62.8 3.7 24 517-540 5-28 (192)
460 2if2_A Dephospho-COA kinase; a 96.4 0.0019 6.4E-08 63.2 4.3 28 244-272 3-30 (204)
461 3lnc_A Guanylate kinase, GMP k 96.4 0.00087 3E-08 67.2 1.8 32 236-267 21-53 (231)
462 1ewq_A DNA mismatch repair pro 96.4 0.0092 3.2E-07 70.2 10.8 25 242-266 576-600 (765)
463 3a00_A Guanylate kinase, GMP k 96.4 0.0016 5.5E-08 62.9 3.6 25 243-267 2-26 (186)
464 1s96_A Guanylate kinase, GMP k 96.4 0.0019 6.5E-08 64.3 4.2 29 239-267 13-41 (219)
465 2gza_A Type IV secretion syste 96.4 0.0012 4.1E-08 71.1 3.0 76 236-311 169-262 (361)
466 2yvu_A Probable adenylyl-sulfa 96.4 0.0039 1.3E-07 60.0 6.3 38 240-277 11-51 (186)
467 3tau_A Guanylate kinase, GMP k 96.4 0.0017 5.7E-08 64.1 3.7 29 240-268 6-34 (208)
468 1nks_A Adenylate kinase; therm 96.4 0.002 6.7E-08 62.2 4.1 24 244-267 3-26 (194)
469 2bdt_A BH3686; alpha-beta prot 96.4 0.0021 7.2E-08 62.1 4.3 35 243-278 3-37 (189)
470 1ly1_A Polynucleotide kinase; 96.4 0.0015 5.1E-08 62.3 3.2 25 517-541 4-29 (181)
471 2fz4_A DNA repair protein RAD2 96.4 0.012 4.2E-07 59.1 10.1 33 243-275 109-141 (237)
472 2vli_A Antibiotic resistance p 96.4 0.0016 5.4E-08 62.4 3.3 29 516-544 6-34 (183)
473 3dl0_A Adenylate kinase; phosp 96.4 0.002 6.7E-08 63.7 4.1 29 518-546 3-31 (216)
474 2v54_A DTMP kinase, thymidylat 96.4 0.0023 7.8E-08 62.5 4.5 34 241-274 3-37 (204)
475 2pt5_A Shikimate kinase, SK; a 96.4 0.0021 7.3E-08 60.6 4.2 28 518-545 3-30 (168)
476 1jjv_A Dephospho-COA kinase; P 96.4 0.0017 5.8E-08 63.7 3.6 32 244-278 4-35 (206)
477 2pbr_A DTMP kinase, thymidylat 96.4 0.0027 9.3E-08 61.3 4.9 31 244-274 2-35 (195)
478 1e4v_A Adenylate kinase; trans 96.4 0.0023 7.8E-08 63.3 4.5 30 244-273 2-31 (214)
479 1ak2_A Adenylate kinase isoenz 96.4 0.0025 8.4E-08 64.0 4.7 31 516-546 17-47 (233)
480 2pez_A Bifunctional 3'-phospho 96.4 0.0021 7.3E-08 61.5 4.1 36 516-551 6-44 (179)
481 1m7g_A Adenylylsulfate kinase; 96.4 0.0023 7.8E-08 63.2 4.4 40 239-278 22-65 (211)
482 4a82_A Cystic fibrosis transme 96.4 0.0044 1.5E-07 71.1 7.3 46 505-550 355-404 (578)
483 3dm5_A SRP54, signal recogniti 96.4 0.011 3.9E-07 64.6 10.3 71 515-585 100-193 (443)
484 3fb4_A Adenylate kinase; psych 96.3 0.0021 7.2E-08 63.5 4.1 29 518-546 3-31 (216)
485 1ls1_A Signal recognition part 96.3 0.012 4.1E-07 61.3 10.1 35 240-274 96-133 (295)
486 3ney_A 55 kDa erythrocyte memb 96.3 0.0024 8.2E-08 62.2 4.4 32 236-267 13-44 (197)
487 3nwj_A ATSK2; P loop, shikimat 96.3 0.0014 5E-08 66.5 2.9 31 516-546 49-79 (250)
488 2r8r_A Sensor protein; KDPD, P 96.3 0.045 1.5E-06 54.1 13.5 159 518-702 9-208 (228)
489 2bwj_A Adenylate kinase 5; pho 96.3 0.0021 7.2E-08 62.4 4.0 31 516-546 13-43 (199)
490 1cke_A CK, MSSA, protein (cyti 96.3 0.0026 9E-08 63.2 4.8 28 517-544 7-34 (227)
491 3b9q_A Chloroplast SRP recepto 96.3 0.003 1E-07 66.1 5.3 30 237-266 95-124 (302)
492 2xb4_A Adenylate kinase; ATP-b 96.3 0.0027 9.2E-08 63.3 4.7 28 244-271 2-29 (223)
493 2qor_A Guanylate kinase; phosp 96.3 0.0024 8.1E-08 62.7 4.2 30 239-268 9-38 (204)
494 2plr_A DTMP kinase, probable t 96.3 0.0025 8.4E-08 62.6 4.3 28 242-269 4-31 (213)
495 3e1s_A Exodeoxyribonuclease V, 96.3 0.004 1.4E-07 71.2 6.6 97 516-629 205-317 (574)
496 1zak_A Adenylate kinase; ATP:A 96.3 0.002 6.9E-08 64.0 3.6 30 516-545 6-35 (222)
497 2qm8_A GTPase/ATPase; G protei 96.3 0.0083 2.8E-07 63.8 8.5 30 237-266 50-79 (337)
498 2z0h_A DTMP kinase, thymidylat 96.3 0.0033 1.1E-07 60.9 5.0 31 244-274 2-35 (197)
499 3tlx_A Adenylate kinase 2; str 96.3 0.0023 7.8E-08 64.8 3.9 33 514-546 28-60 (243)
500 2a5y_B CED-4; apoptosis; HET: 96.3 0.024 8.2E-07 64.5 12.8 141 516-685 153-328 (549)
No 1
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=1.6e-132 Score=1166.53 Aligned_cols=752 Identities=78% Similarity=1.258 Sum_probs=626.8
Q ss_pred CCCCCCcchHHhhcCCCCCeEEEecccCCCCcEEEECHHHHhhcCCCCCCEEEEEeCCCceEEEEEEcCCCCCCCeEEEc
Q 004267 11 NSGKKDYSTAILERKKSPNRLVVDEAINDDNSVVGLHPDTMDKLQIFRGDTILIKGKKRKDTICIALADDTCEQPKIRMN 90 (764)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~l~~~~gd~v~i~~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (764)
...+.|++|||++.|+.||+|+|+++.++++++|+|+|++|++|||.+||+|.|+|++++.+++|++++++++.+.|+||
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~~~~l~~~~gd~v~i~g~~~~~~~~~~~~~~~~~~~~i~~~ 85 (806)
T 3cf2_A 6 DSKGDDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMN 85 (806)
T ss_dssp ---------------CCTTEEECBCCSSCCTTEEEECHHHHHHTTCCSSCEEEEECGGGCBCCEEEEECTTSBTTBCEEC
T ss_pred CCCCCCchhhhhhccCCCceEEEccCCCCCCCEEEECHHHHHHcCCCCCCEEEEEcCCCceEEEEEcCCCCCCCCEEEeC
Confidence 33456999999999999999999999988999999999999999999999999999988889999999999999999999
Q ss_pred HhHHhhcCcCCCCeEEEEecCCCCCCcEEEeccccCcccCcchhhHHHHHHHhhhhcCccccCCcEEEEecCceeEEEEE
Q 004267 91 KVVRSNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTIEGVTGNLFDAFLRPYFTEAYRPVRKGDLFLVRGGMRSVEFKV 170 (764)
Q Consensus 91 ~~~r~~~~~~~g~~v~v~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~f~v 170 (764)
+.+|+|+|+++||.|+|+++..++.+++|++.|+..+...+.+..+..+++.||....+||..||.|.+.+.+..+.|+|
T Consensus 86 ~~~r~n~~v~~gd~V~v~~~~~~~~a~~v~l~p~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~gd~~~v~~~~~~~~f~V 165 (806)
T 3cf2_A 86 RVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKV 165 (806)
T ss_dssp HHHHHTTTCCTTCEEEEEECCCCCBCSBEEEEEBTTTSTTCCSCHHHHTHHHHHTTTCCEEETTCEEEECCTTSCEEEEE
T ss_pred HHHHHhcCCCCCCEEEEEECCCCCcCCEEEEeccccchhccchhHHHHHHHHHHHhcCCcccCCCEEEEecCCcEEEEEE
Confidence 99999999999999999998788999999999998877777777888899999988889999999999998888899999
Q ss_pred EEecCCceEeeCCCceEEecCCCCcccc-cccCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEEC
Q 004267 171 IETDPGEYCVVAPDTEIFCEGEPIKRED-EDRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYG 249 (764)
Q Consensus 171 ~~~~p~~~~~~~~~t~i~~~~~~~~~~~-~~~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~G 249 (764)
++++|.++++|+++|.|.+.+.+..... ....++++|+||||+++++++|++++.+|++||++|+++|+.+++||||||
T Consensus 166 ~~~~P~~~~~v~~~T~i~~~~~~~~~~~~~~~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~G 245 (806)
T 3cf2_A 166 VETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYG 245 (806)
T ss_dssp EEESSSSEEECCTTSBCCBCSCCBCCCTTSCCSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEEC
T ss_pred EEEeCCCCeEECCCcEEEEeccccCcccccccCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEEC
Confidence 9999999999999999998877765432 335788999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHhCCeEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHH
Q 004267 250 PPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIV 329 (764)
Q Consensus 250 ppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~ 329 (764)
|||||||+||+++|++++.+++.++++++.+++.|+++..++.+|+.|..+.||||||||+|.++++++...++.+++++
T Consensus 246 PPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv 325 (806)
T 3cf2_A 246 PPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIV 325 (806)
T ss_dssp CTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHH
T ss_pred CCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888888899999
Q ss_pred HHHHHHhhcccCCCeEEEEEecCCCCCCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCCCchhhhHHhhhcCC
Q 004267 330 SQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHG 409 (764)
Q Consensus 330 ~~Ll~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g 409 (764)
.+|+.+|+++..+.+|+||++||+++.+|++++|+|||+++|+++.|+..+|.+||+.|++++++..++++..+|..|+|
T Consensus 326 ~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~G 405 (806)
T 3cf2_A 326 SQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHG 405 (806)
T ss_dssp HHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCS
T ss_pred HHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCC
Confidence 99999999999989999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHHHhhccccccccchhhHHHhhhhcccchhhhccccccCCCCcceeeeeccCccccccccchhh
Q 004267 410 YVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVSNEHFQTALGTSNPSALRETVVEVPNVSWEDIGGLENV 489 (764)
Q Consensus 410 ~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~ps~~~~~~~~~~~v~~~~i~g~~~~ 489 (764)
|+|+||..+|++|++.++++..+.++........+......++.+||..|+....|+.+++...+.|+++|++|+|++++
T Consensus 406 fsgaDL~~Lv~eA~~~A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~v~w~diggl~~~ 485 (806)
T 3cf2_A 406 HVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDV 485 (806)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHHHSSSSCCCCCCCCCBCCCCCSTTCCSCHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhccccccccccccchhhhccceeeHHHHHHHHHhCCCcccccccccCCCCCHHHhCCHHHH
Confidence 99999999999999999998877666665555666667788999999999999999999999999999999999999999
Q ss_pred hhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccchhcccCcchHHHHHHHHH
Q 004267 490 KRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDK 569 (764)
Q Consensus 490 k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~~~~~g~se~~i~~~f~~ 569 (764)
|+.|.+.+.||+++++.|.++|+++++|+|||||||||||++|+++|++++.+|+.+++++++++|+|+++++++.+|+.
T Consensus 486 k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~ 565 (806)
T 3cf2_A 486 KRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDK 565 (806)
T ss_dssp HHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCCCCCccCCCCCccceEEee
Q 004267 570 ARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYI 649 (764)
Q Consensus 570 a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~ 649 (764)
|++..||||||||||++++.|+...++.++..++++++||++|||+....+|+||+|||+|+.||||++||||||++|||
T Consensus 566 Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v 645 (806)
T 3cf2_A 566 ARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYI 645 (806)
T ss_dssp HHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC
T ss_pred HHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEE
Confidence 99999999999999999999986655556778999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCCCcccccccc
Q 004267 650 PLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRRDNPEAMDEDAA 729 (764)
Q Consensus 650 ~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 729 (764)
|+||.++|.+||+.++++.++..++|++.||+.|+||||+||.++|++|++.|+++.++...............+. ...
T Consensus 646 ~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~-~~~ 724 (806)
T 3cf2_A 646 PLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAME-VEE 724 (806)
T ss_dssp -----CHHHHTTTTTSSCC--CCC----------------CHHHHHHHHHHHHHHHHHC---------------------
T ss_pred CCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccc-ccc
Confidence 9999999999999999999999999999999999999999999999999999999988765432222111111111 112
Q ss_pred ccccccccHHHHHHHHHhcCCCCCCccccccccc
Q 004267 730 EDEVSEIKAAHFEESMKFARRSICSDAAAVPRYW 763 (764)
Q Consensus 730 ~~~~~~i~~~~f~~a~~~~~~s~~~~~~~~~~~~ 763 (764)
.+..+.|+++||++|+++++||||.++...|..|
T Consensus 725 ~~~~~~i~~~df~~al~~~~pSvs~~~l~~y~~~ 758 (806)
T 3cf2_A 725 DDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMF 758 (806)
T ss_dssp ---CCC----CCTTTC---------------CCC
T ss_pred ccccCccCHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 2345689999999999999999955555566667
No 2
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=100.00 E-value=7e-105 Score=952.01 Aligned_cols=754 Identities=78% Similarity=1.256 Sum_probs=642.8
Q ss_pred CCCCCCCCcchHHhhcCCCCCeEEEecccCCCCcEEEECHHHHhhcCCCCCCEEEEEeCCCceEEEEEEcCCCCCCCeEE
Q 004267 9 DANSGKKDYSTAILERKKSPNRLVVDEAINDDNSVVGLHPDTMDKLQIFRGDTILIKGKKRKDTICIALADDTCEQPKIR 88 (764)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~l~~~~gd~v~i~~~~~~~~~~~~~~~~~~~~~~i~ 88 (764)
++..++++++|||++.+|.|++|+|+++.+++.++|||+|++|++|||.+||+|.|+|++++.++|.+|++.+++.+.|+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (806)
T 1ypw_A 4 GADSKGDDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIR 83 (806)
T ss_dssp -------------CCCCCCTTEEEEECCSSCCSSCEEECHHHHHHHTCCTTCEEEEEETTTEECCEEEEECSSSCTTEEE
T ss_pred cccccccccchhHHhccCCCceEEEccCcCCcCCEEEECHHHHHHcCCCCCCEEEEecCccCcEEEEEecCCCCCCCeEE
Confidence 34456789999999999999999999999988899999999999999999999999999877889999999889999999
Q ss_pred EcHhHHhhcCcCCCCeEEEEecCCCCCCcEEEeccccCcccCcchhhHHHHHHHhhhhcCccccCCcEEEEecCceeEEE
Q 004267 89 MNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTIEGVTGNLFDAFLRPYFTEAYRPVRKGDLFLVRGGMRSVEF 168 (764)
Q Consensus 89 ~~~~~r~~~~~~~g~~v~v~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~f 168 (764)
||+.+|.|+|+++||.|+|+++..++++++|++.|...++.++.+.++..+++++|....+||.+|++|.+...+..+.|
T Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 163 (806)
T 1ypw_A 84 MNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEF 163 (806)
T ss_dssp CCHHHHTTTTCCTTCEEEEEECTTCCBCSEEEEEECTTTSSSCCSCCTTTTTGGGTTTTCCBCCTTCEEEECCSSSCEEE
T ss_pred ecHHHHhhcCCCCCCEEEEEECCCCCcCcEEEEeCCccchhhcccchHHHHHHHHhccCCccccCCCEEEecCCCcceEE
Confidence 99999999999999999999986788999999999987776666666777999999877899999999999888888999
Q ss_pred EEEEecCCceEeeCCCceEEecCCCCcccc-cccCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEE
Q 004267 169 KVIETDPGEYCVVAPDTEIFCEGEPIKRED-EDRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILL 247 (764)
Q Consensus 169 ~v~~~~p~~~~~~~~~t~i~~~~~~~~~~~-~~~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL 247 (764)
+|++++|.++++++++|.+.+.+.+..+.. ....+.++|+||+|+++++++|++++.+|+.+|++|+++++.++++|||
T Consensus 164 ~v~~~~p~~~~~v~~~t~~~~~~~~~~~~~~~~~~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL 243 (806)
T 1ypw_A 164 KVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILL 243 (806)
T ss_dssp EEEEETTTTCCBCCSSSEEEECSCCCCCCTTSCCSSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEE
T ss_pred EEEeccCCCCceecCCeEEEecCccccchhhhcccCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEE
Confidence 999999999999999999988877765432 2346789999999999999999999999999999999999999999999
Q ss_pred ECCCCCCHHHHHHHHHHHhCCeEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHH
Q 004267 248 YGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERR 327 (764)
Q Consensus 248 ~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~ 327 (764)
+||||||||||+++||++++.+++.+++.++.+.+.++.+..++.+|+.+..+.|+++|+||+|+++++++...++...+
T Consensus 244 ~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~ 323 (806)
T 1ypw_A 244 YGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERR 323 (806)
T ss_dssp CSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHH
T ss_pred ECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988878888999
Q ss_pred HHHHHHHHhhcccCCCeEEEEEecCCCCCCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCCCchhhhHHhhhc
Q 004267 328 IVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDT 407 (764)
Q Consensus 328 v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~~~~l~~la~~t 407 (764)
+..+|+.+++++..+..+++|++||+++.+++++++++||++.+.++.|+.++|.+|++.+++++.+..+.++..++..+
T Consensus 324 ~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t 403 (806)
T 1ypw_A 324 IVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANET 403 (806)
T ss_dssp HHHHHHHHHHSSCTTSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSC
T ss_pred HHHHHHHHhhhhcccccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhh
Confidence 99999999999998889999999999999999999999999999999999999999999999999998888999999999
Q ss_pred CCCchHHHHHHHHHHHHHHHHhhccccccccchhhHHHhhhhcccchhhhccccccCCCCcceeeeeccCccccccccch
Q 004267 408 HGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVSNEHFQTALGTSNPSALRETVVEVPNVSWEDIGGLE 487 (764)
Q Consensus 408 ~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~ps~~~~~~~~~~~v~~~~i~g~~ 487 (764)
+||+++++..+|.+++..++++....+......+.........++..++..++....|+..++...+.+.+.|++++|++
T Consensus 404 ~g~~g~dl~~l~~ea~~~a~r~~~~~i~~~~~~~~~~~~~~~~v~~~d~~~al~~~~~s~~~~~~~~~~~v~~~di~gl~ 483 (806)
T 1ypw_A 404 HGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLE 483 (806)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHTTTTTSCHHHHCCHHHHTTCCCCTTHHHHHHHHSCCCCCCCCCCCCCCCSSCSSSCCC
T ss_pred cCcchHHHHHHHHHHHHHHHhhhccccchhhhccchhhhhhhhhhhhhhhccccccCchhhhhhcccCccccccccccch
Confidence 99999999999999999988877665555444444445556778888999999888898888888899999999999999
Q ss_pred hhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccchhcccCcchHHHHHHH
Q 004267 488 NVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIF 567 (764)
Q Consensus 488 ~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~~~~~g~se~~i~~~f 567 (764)
.+|+.|.+.+.++..+++.+..+++.++.++||+||||||||+||+++|++++.+|+.++++++.++|+|++++.++.+|
T Consensus 484 ~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f 563 (806)
T 1ypw_A 484 DVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIF 563 (806)
T ss_dssp CHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTSSHHHHHHH
T ss_pred hhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhhcCccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCCCCCccCCCCCccceEE
Q 004267 568 DKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLI 647 (764)
Q Consensus 568 ~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i 647 (764)
+.|+...|||+||||||+++..|+...++..+...+++++||++||++....+++||+|||+|+.||||++|||||+..|
T Consensus 564 ~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~ld~allrpgRf~~~i 643 (806)
T 1ypw_A 564 DKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLI 643 (806)
T ss_dssp HHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCBSCGGGSCTTSSGGGTTSCC
T ss_pred HHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEecCCcccCCHHHhCccccCcee
Confidence 99999999999999999999888654333345678999999999999988889999999999999999999999999999
Q ss_pred eecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCCCcccccc
Q 004267 648 YIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRRDNPEAMDED 727 (764)
Q Consensus 648 ~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 727 (764)
+||+|+.++|.+||+.++++.++..++++..+++.++||||+||.++|++|++.|+++.++...............+. .
T Consensus 644 ~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~-~ 722 (806)
T 1ypw_A 644 YIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAME-V 722 (806)
T ss_dssp CCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHHSCC---------------------
T ss_pred ecCCCCHHHHHHHHHHHhccCCCCcccCHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccc-c
Confidence 999999999999999999999999999999999999999999999999999999999987654432221111111111 1
Q ss_pred ccccccccccHHHHHHHHHhcCCCCCCccccccccc
Q 004267 728 AAEDEVSEIKAAHFEESMKFARRSICSDAAAVPRYW 763 (764)
Q Consensus 728 ~~~~~~~~i~~~~f~~a~~~~~~s~~~~~~~~~~~~ 763 (764)
...+..+.|+++||++|++.++||++.+....+..|
T Consensus 723 ~~~~~~~~i~~~~f~~a~~~~~~svs~~~~~~ye~~ 758 (806)
T 1ypw_A 723 EEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMF 758 (806)
T ss_dssp ----CCTTTTTTSSCCCCCC----------------
T ss_pred ccccccCccCHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 112335679999999999999999944444445555
No 3
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=1.9e-65 Score=577.39 Aligned_cols=481 Identities=78% Similarity=1.257 Sum_probs=417.9
Q ss_pred CCCCCCCCcchHHhhcCCCCCeEEEecccCCCCcEEEECHHHHhhcCCCCCCEEEEEeCCCceEEEEEEcCCCCCCCeEE
Q 004267 9 DANSGKKDYSTAILERKKSPNRLVVDEAINDDNSVVGLHPDTMDKLQIFRGDTILIKGKKRKDTICIALADDTCEQPKIR 88 (764)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~l~~~~gd~v~i~~~~~~~~~~~~~~~~~~~~~~i~ 88 (764)
+...++++++|||++.+|.||+|+|+++.+++.++|||+|++|++||+.+||+|.|+|++++.++|++||..+++++.|+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~~~~l~~~~gd~v~~~g~~~~~~~~~~~~~~~~~~~~i~ 83 (489)
T 3hu3_A 4 GADSKGDDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIR 83 (489)
T ss_dssp -------------CCCCCCTTEEEEECCTTCCTTEEEECHHHHHHHTCCTTCEEEEECSTTCEEEEEEEECTTSCTTEEE
T ss_pred cccccccccchhhhhcccCCCeeEEccCCCCcCCEEEECHHHHHHcCCCCCCEEEEecCccCcEEEEEeeCCCCCCCEEE
Confidence 34467899999999999999999999999988999999999999999999999999999888999999999889999999
Q ss_pred EcHhHHhhcCcCCCCeEEEEecCCCCCCcEEEeccccCcccCcchhhHHHHHHHhhhhcCccccCCcEEEEecCceeEEE
Q 004267 89 MNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTIEGVTGNLFDAFLRPYFTEAYRPVRKGDLFLVRGGMRSVEF 168 (764)
Q Consensus 89 ~~~~~r~~~~~~~g~~v~v~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~f 168 (764)
||+.+|+|+|+++||+|+|+++..++++++|++.|+...+..+....++.+.+++.....+++..|+.+.+.+.++.+.|
T Consensus 84 ~~~~~r~n~~~~~gd~v~v~~~~~~~~a~~v~~~~~~~av~a~~~ga~d~~~Kp~~~~~l~~~~~~~~~~~~~~~~~~~~ 163 (489)
T 3hu3_A 84 MNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVHGGMRAVEF 163 (489)
T ss_dssp CCHHHHHHTTCCTTCEEEEEECTTCCBCSEEEEEEBGGGSSSCCSCHHHHTHHHHHTTTCEEEETTCEEEEEETTEEEEE
T ss_pred ecHHHHhhcCCCCCCEEEEEECCCCCccCEEEEcCCCcccccccchhHHHHhHHHHhhcCcccccCCEEEecCCCceEEE
Confidence 99999999999999999999987899999999999987776665567787888988777788999999999888888999
Q ss_pred EEEEecCCceEeeCCCceEEecCCCCcccc-cccCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEE
Q 004267 169 KVIETDPGEYCVVAPDTEIFCEGEPIKRED-EDRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILL 247 (764)
Q Consensus 169 ~v~~~~p~~~~~~~~~t~i~~~~~~~~~~~-~~~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL 247 (764)
+++..+|..++.++++|.+.+.+.+..... ......++|++|+|++.++++|++++..++.+|++|..+++.++.++||
T Consensus 164 ~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL 243 (489)
T 3hu3_A 164 KVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILL 243 (489)
T ss_dssp EEEEEESSSEEEECTTCEEECCSSCBCHHHHHHHHTCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEE
T ss_pred EEEeecCCCceEEcCCeEEEEccCcccccccccccCCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEE
Confidence 999999999999999999988877664322 1234678999999999999999999999999999999999999999999
Q ss_pred ECCCCCCHHHHHHHHHHHhCCeEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHH
Q 004267 248 YGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERR 327 (764)
Q Consensus 248 ~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~ 327 (764)
+||||||||++|++++++++.+|+.++++++.+.+.|+.+..++.+|+.+....|++|||||+|.++++++...++...+
T Consensus 244 ~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~ 323 (489)
T 3hu3_A 244 YGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERR 323 (489)
T ss_dssp ECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHH
T ss_pred ECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhcchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988777888899
Q ss_pred HHHHHHHHhhcccCCCeEEEEEecCCCCCCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCCCchhhhHHhhhc
Q 004267 328 IVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDT 407 (764)
Q Consensus 328 v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~~~~l~~la~~t 407 (764)
+..+|+..|++.....+++||++||+++.+++++++++||+..++++.|+.++|.+||+.+++.+.+..+.++..++..+
T Consensus 324 ~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t 403 (489)
T 3hu3_A 324 IVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANET 403 (489)
T ss_dssp HHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTC
T ss_pred HHHHHHHHhhccccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHc
Confidence 99999999999888889999999999999999999999999999999999999999999999999988888999999999
Q ss_pred CCCchHHHHHHHHHHHHHHHHhhccccccccchhhHHHhhhhcccchhhhccccccCCCCcceeeeeccCccccccccch
Q 004267 408 HGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVSNEHFQTALGTSNPSALRETVVEVPNVSWEDIGGLE 487 (764)
Q Consensus 408 ~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~ps~~~~~~~~~~~v~~~~i~g~~ 487 (764)
+||+++|+..+|++|++.++++....++........+......++.+||..++..+.|+.+++..++.|+++|+||||..
T Consensus 404 ~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~~~~~~~~~~~~~vt~edf~~Al~~~~ps~~re~~~e~p~v~W~dig~~~ 483 (489)
T 3hu3_A 404 HGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGRS 483 (489)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTTTTCCTTCSSCCHHHHHHCCBCHHHHHHHHTSHHHHHHHGGGC--------------
T ss_pred cCCcHHHHHHHHHHHHHHHHHhccccccccccccchhhcccCcCCHHHHHHHHHhCCchhhhcccccCCCCCHHHcCCCc
Confidence 99999999999999999999988776666655555556667789999999999999999999999999999999999986
Q ss_pred hh
Q 004267 488 NV 489 (764)
Q Consensus 488 ~~ 489 (764)
+.
T Consensus 484 ~~ 485 (489)
T 3hu3_A 484 HH 485 (489)
T ss_dssp --
T ss_pred cc
Confidence 53
No 4
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.7e-58 Score=495.86 Aligned_cols=264 Identities=39% Similarity=0.704 Sum_probs=249.4
Q ss_pred cCCCCcceeeeeccCccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCe
Q 004267 463 SNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN 542 (764)
Q Consensus 463 ~~ps~~~~~~~~~~~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~ 542 (764)
..|........+.|+++|+||||++++|+.|++.+.+|+.+|+.|.++|+++++|+|||||||||||++|+++|++++.+
T Consensus 130 ~~~~~~~~~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~ 209 (405)
T 4b4t_J 130 ADPLVSLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCK 209 (405)
T ss_dssp CSCCTTSCEEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCE
T ss_pred cCchhhhccccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCC
Confidence 45666677788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecccchhcccCcchHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEE
Q 004267 543 FISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVF 622 (764)
Q Consensus 543 ~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~ 622 (764)
|+.++++++.++|+|+++++++.+|+.|+..+||||||||||++++.|+.+.++.+....+++++||++|||+....+|+
T Consensus 210 f~~v~~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~ 289 (405)
T 4b4t_J 210 FIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIK 289 (405)
T ss_dssp EEEEEGGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEE
T ss_pred ceEEEhHHhhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeE
Confidence 99999999999999999999999999999999999999999999999877655555567889999999999999999999
Q ss_pred EEecCCCCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q 004267 623 IIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYA 702 (764)
Q Consensus 623 vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~sg~di~~~~~~a~~~a 702 (764)
||+|||+|+.||||++||||||+.|+||+||.++|.+||+.++++.++..++|++.+|+.|+|||||||.++|++|++.|
T Consensus 290 vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~A 369 (405)
T 4b4t_J 290 IIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYA 369 (405)
T ss_dssp EEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHH
T ss_pred EEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHhhhcCCCccccccccccccccccHHHHHHHHHhcCCCC
Q 004267 703 IRENIEKDIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRSI 752 (764)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~s~ 752 (764)
+++. ...|+++||++|++++.++.
T Consensus 370 ir~~--------------------------~~~vt~~Df~~Al~~v~~~~ 393 (405)
T 4b4t_J 370 LRER--------------------------RIHVTQEDFELAVGKVMNKN 393 (405)
T ss_dssp HHTT--------------------------CSBCCHHHHHHHHHHHHHHH
T ss_pred HHcC--------------------------CCCcCHHHHHHHHHHHhCcc
Confidence 9864 23699999999999987765
No 5
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-56 Score=481.27 Aligned_cols=261 Identities=37% Similarity=0.657 Sum_probs=247.1
Q ss_pred eeeeeccCccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecc
Q 004267 470 ETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGP 549 (764)
Q Consensus 470 ~~~~~~~~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~ 549 (764)
....+.|+++|+||||++++|+.|++.+.+|+.+++.|.++|+++++|+|||||||||||+||+++|++++.+|+.++++
T Consensus 171 ~~~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s 250 (437)
T 4b4t_I 171 MKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGS 250 (437)
T ss_dssp CEEESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESG
T ss_pred eeeccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhcccCcchHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCC
Q 004267 550 ELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNR 629 (764)
Q Consensus 550 ~l~~~~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~ 629 (764)
++.++|+|++++.++.+|+.|+..+||||||||||++++.|+.+.+..+....+++++||++||++....+|+||+|||+
T Consensus 251 ~l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNr 330 (437)
T 4b4t_I 251 ELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNK 330 (437)
T ss_dssp GGCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESC
T ss_pred HhhhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCC
Confidence 99999999999999999999999999999999999999999776655566778999999999999999999999999999
Q ss_pred CCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 004267 630 PDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEK 709 (764)
Q Consensus 630 ~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~ 709 (764)
|+.||||++||||||+.|+||+||.++|.+||+.++++.++..++|++.||+.|+|||||||+++|++|++.|+++.
T Consensus 331 pd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~--- 407 (437)
T 4b4t_I 331 IETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRER--- 407 (437)
T ss_dssp STTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTT---
T ss_pred hhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred hHHHHhhhcCCCccccccccccccccccHHHHHHHHHhcCCCCCCccc
Q 004267 710 DIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRSICSDAA 757 (764)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~s~~~~~~ 757 (764)
...|+++||++|++++.|+. +++.
T Consensus 408 -----------------------~~~It~eDf~~Al~rv~~~~-~~e~ 431 (437)
T 4b4t_I 408 -----------------------RMQVTAEDFKQAKERVMKNK-VEEN 431 (437)
T ss_dssp -----------------------CSCBCHHHHHHHHHHHHHHH-CCCS
T ss_pred -----------------------CCccCHHHHHHHHHHHhCCC-Chhh
Confidence 23699999999999999998 5543
No 6
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-54 Score=477.16 Aligned_cols=264 Identities=38% Similarity=0.650 Sum_probs=247.1
Q ss_pred CCCcceeeeeccCccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeE
Q 004267 465 PSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFI 544 (764)
Q Consensus 465 ps~~~~~~~~~~~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i 544 (764)
|........+.|+++|+||||++++|+.|++.+.+|+.+|+.|.++|+++++|+|||||||||||++|+++|++++.+|+
T Consensus 165 ~~~~~~~~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~ 244 (434)
T 4b4t_M 165 SRVKAMEVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFL 244 (434)
T ss_dssp CSCSCCEEESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEE
T ss_pred chhhhcccCCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEE
Confidence 33333445678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecccchhcccCcchHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEE
Q 004267 545 SVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFII 624 (764)
Q Consensus 545 ~v~~~~l~~~~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi 624 (764)
.++++++.++|+|++++.++.+|..|+..+||||||||+|++++.|..+.++......+++++||++||++....+|+||
T Consensus 245 ~v~~s~l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVI 324 (434)
T 4b4t_M 245 KLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVL 324 (434)
T ss_dssp EEEGGGGCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEE
T ss_pred EEehhhhhhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEE
Confidence 99999999999999999999999999999999999999999999997765554556778999999999999998999999
Q ss_pred ecCCCCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q 004267 625 GATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIR 704 (764)
Q Consensus 625 ~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~sg~di~~~~~~a~~~a~~ 704 (764)
||||+|+.||||++||||||+.|+||+||.++|.+||+.++++.++..++|++.||+.|+|||||||.++|++|++.|++
T Consensus 325 aaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r 404 (434)
T 4b4t_M 325 AATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALR 404 (434)
T ss_dssp EECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHH
T ss_pred EeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHhHHHHhhhcCCCccccccccccccccccHHHHHHHHHhcCCCCCCc
Q 004267 705 ENIEKDIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRSICSD 755 (764)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~s~~~~ 755 (764)
+. ...|+++||++|+++++|+. ++
T Consensus 405 ~~--------------------------~~~i~~~Df~~Al~~v~~~~-~~ 428 (434)
T 4b4t_M 405 NG--------------------------QSSVKHEDFVEGISEVQARK-SK 428 (434)
T ss_dssp HT--------------------------CSSBCHHHHHHHHHSCSSSC-CC
T ss_pred cC--------------------------CCCcCHHHHHHHHHHHhCCC-Cc
Confidence 64 23699999999999999998 43
No 7
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-54 Score=476.28 Aligned_cols=262 Identities=41% Similarity=0.685 Sum_probs=247.4
Q ss_pred CCCcceeeeeccCccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeE
Q 004267 465 PSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFI 544 (764)
Q Consensus 465 ps~~~~~~~~~~~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i 544 (764)
|........+.|+++|+||||++++|+.|++.+.+|+.+|+.|.++|+++++|+|||||||||||++|+++|++++.+|+
T Consensus 165 ~~~~~~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~ 244 (437)
T 4b4t_L 165 PLVYNMTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFI 244 (437)
T ss_dssp CCCSSCEEEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEE
T ss_pred chhheeeeccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence 44445566788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecccchhcccCcchHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEE
Q 004267 545 SVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFII 624 (764)
Q Consensus 545 ~v~~~~l~~~~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi 624 (764)
.++++++.++|+|++++.++.+|..|+...||||||||||++++.|+......+....+++++||++|||+....+|+||
T Consensus 245 ~v~~s~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI 324 (437)
T 4b4t_L 245 FSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKII 324 (437)
T ss_dssp EEEGGGTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEE
T ss_pred EEehhhhccccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEE
Confidence 99999999999999999999999999999999999999999999997765555666788999999999999998999999
Q ss_pred ecCCCCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q 004267 625 GATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIR 704 (764)
Q Consensus 625 ~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~sg~di~~~~~~a~~~a~~ 704 (764)
+|||+|+.||||++||||||+.|+||+||.++|.+||+.++++.++..++|+..+|+.|+|||||||.++|++|++.|++
T Consensus 325 ~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air 404 (437)
T 4b4t_L 325 MATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIR 404 (437)
T ss_dssp EEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHH
T ss_pred EecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHhHHHHhhhcCCCccccccccccccccccHHHHHHHHHhcCCCC
Q 004267 705 ENIEKDIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRSI 752 (764)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~s~ 752 (764)
+. ...|+++||++|++++.|+.
T Consensus 405 ~~--------------------------~~~i~~~d~~~Al~~v~~~~ 426 (437)
T 4b4t_L 405 DD--------------------------RDHINPDDLMKAVRKVAEVK 426 (437)
T ss_dssp TT--------------------------CSSBCHHHHHHHHHHHHHTC
T ss_pred cC--------------------------CCCCCHHHHHHHHHHHHhcc
Confidence 64 23699999999999999887
No 8
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-54 Score=474.23 Aligned_cols=255 Identities=35% Similarity=0.678 Sum_probs=241.8
Q ss_pred eeeccCccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccc
Q 004267 472 VVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 551 (764)
Q Consensus 472 ~~~~~~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l 551 (764)
..+.|+++|+||||++++|+.|++.+.+|+.+++.|.++|+++++|+|||||||||||+||+++|++++.+|+.++++++
T Consensus 200 v~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L 279 (467)
T 4b4t_H 200 VEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSEL 279 (467)
T ss_dssp EESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGG
T ss_pred ecCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHh
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccCcchHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCC
Q 004267 552 LTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPD 631 (764)
Q Consensus 552 ~~~~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~ 631 (764)
.++|+|++++.++.+|..|+..+||||||||+|+++..|+...++......++++++|++||++....+|+||+|||+|+
T Consensus 280 ~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd 359 (467)
T 4b4t_H 280 VQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPN 359 (467)
T ss_dssp CCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTT
T ss_pred hcccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcc
Confidence 99999999999999999999999999999999999999977655445567789999999999999999999999999999
Q ss_pred CCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHhH
Q 004267 632 IIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDI 711 (764)
Q Consensus 632 ~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~ 711 (764)
.||||++||||||+.|+||+||.++|.+||+.++++.++..++|++.||+.|+|||||||+++|++|++.|+++.
T Consensus 360 ~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~----- 434 (467)
T 4b4t_H 360 TLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRAR----- 434 (467)
T ss_dssp SBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHT-----
T ss_pred cCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcC-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999874
Q ss_pred HHHhhhcCCCccccccccccccccccHHHHHHHHHhcCCCC
Q 004267 712 ERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRSI 752 (764)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~s~ 752 (764)
...|+++||++|++++.++.
T Consensus 435 ---------------------~~~it~~Df~~Al~kV~~g~ 454 (467)
T 4b4t_H 435 ---------------------RKVATEKDFLKAVDKVISGY 454 (467)
T ss_dssp ---------------------CSSBCHHHHHHHHHHHHHHH
T ss_pred ---------------------CCccCHHHHHHHHHHHhcCc
Confidence 23699999999999987655
No 9
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4e-53 Score=464.71 Aligned_cols=259 Identities=41% Similarity=0.664 Sum_probs=243.6
Q ss_pred eeeeccCccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEeccc
Q 004267 471 TVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPE 550 (764)
Q Consensus 471 ~~~~~~~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~ 550 (764)
...+.|+++|+||||++++|+.|.+.+.+|+.+++.|.++|+++++|+|||||||||||++|+++|++++.+|+.+++++
T Consensus 162 ~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~ 241 (428)
T 4b4t_K 162 GENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSE 241 (428)
T ss_dssp EEESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGG
T ss_pred cCCCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecch
Confidence 45578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhcccCcchHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCC
Q 004267 551 LLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRP 630 (764)
Q Consensus 551 l~~~~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~ 630 (764)
+.++|+|++++.++.+|..|+..+|||+||||+|++++.|+......+....+++++||++|||+....+|+||||||+|
T Consensus 242 l~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~ 321 (428)
T 4b4t_K 242 FVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRA 321 (428)
T ss_dssp TCCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCS
T ss_pred hhccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCCh
Confidence 99999999999999999999999999999999999999997766666667889999999999999999999999999999
Q ss_pred CCCCccCCCCCccceEEeec-CCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 004267 631 DIIDPALLRPGRLDQLIYIP-LPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEK 709 (764)
Q Consensus 631 ~~ld~allrpgRf~~~i~~~-~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~ 709 (764)
+.||||++||||||+.|+|| +||.++|..||+.++++.++..++|++.+|..|+|||||||.++|++|++.|+++.
T Consensus 322 ~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~--- 398 (428)
T 4b4t_K 322 DTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN--- 398 (428)
T ss_dssp SSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTT---
T ss_pred hhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC---
Confidence 99999999999999999997 89999999999999999999999999999999999999999999999999999864
Q ss_pred hHHHHhhhcCCCccccccccccccccccHHHHHHHHHh-cCCCCCCcc
Q 004267 710 DIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKF-ARRSICSDA 756 (764)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~-~~~s~~~~~ 756 (764)
...|+++||++|+.. ++++. +.+
T Consensus 399 -----------------------~~~i~~~d~~~A~~~~~~~~~-~~~ 422 (428)
T 4b4t_K 399 -----------------------RYVILQSDLEEAYATQVKTDN-TVD 422 (428)
T ss_dssp -----------------------CSSBCHHHHHHHHHHHSCSCC-CSS
T ss_pred -----------------------CCCCCHHHHHHHHHHhhCccC-Ccc
Confidence 236999999999976 56666 443
No 10
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-46 Score=403.60 Aligned_cols=249 Identities=43% Similarity=0.779 Sum_probs=231.1
Q ss_pred ccCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhh
Q 004267 200 DRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIM 279 (764)
Q Consensus 200 ~~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~ 279 (764)
...|+++|+||||+++++++|++++.+|++||++|+++|+.+++|||||||||||||+||+++|++++.+|+.++++++.
T Consensus 140 ~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~ 219 (405)
T 4b4t_J 140 EKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELV 219 (405)
T ss_dssp ECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGS
T ss_pred cCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhh
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCch---HHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCC
Q 004267 280 SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHG---EVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNS 356 (764)
Q Consensus 280 ~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~---~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ 356 (764)
++|.|+++..++.+|+.|+...||||||||+|++++++....+ ....+++.+|++.||++....+|+||+|||+|+.
T Consensus 220 sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~ 299 (405)
T 4b4t_J 220 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDI 299 (405)
T ss_dssp CSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSS
T ss_pred ccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhh
Confidence 9999999999999999999999999999999999998764332 2346788999999999999999999999999999
Q ss_pred CChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCCCchhhhHHhhhcCCCchHHHHHHHHHHHHHHHHhhcccccc
Q 004267 357 IDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDL 436 (764)
Q Consensus 357 ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~ 436 (764)
+||+++|+|||++.|+++.|+.++|.+||+.|++++++..++++..+|..|+||+|+||.++|++|++.++++..
T Consensus 300 LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~~~----- 374 (405)
T 4b4t_J 300 LDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERR----- 374 (405)
T ss_dssp SCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTC-----
T ss_pred CCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCC-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987642
Q ss_pred ccchhhHHHhhhhcccchhhhccccccCC
Q 004267 437 EDETIDAEILNSMAVSNEHFQTALGTSNP 465 (764)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~al~~~~p 465 (764)
..++.+||..|+..+.+
T Consensus 375 ------------~~vt~~Df~~Al~~v~~ 391 (405)
T 4b4t_J 375 ------------IHVTQEDFELAVGKVMN 391 (405)
T ss_dssp ------------SBCCHHHHHHHHHHHHH
T ss_pred ------------CCcCHHHHHHHHHHHhC
Confidence 34677888888776543
No 11
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.1e-45 Score=395.22 Aligned_cols=249 Identities=45% Similarity=0.739 Sum_probs=230.5
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhhh
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~ 280 (764)
..++++|+||||++++++.|++.+.+|++||++|+.+|+.+++|||||||||||||+||+++|++++.+|+.++++++.+
T Consensus 175 ~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~s 254 (437)
T 4b4t_I 175 KSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQ 254 (437)
T ss_dssp SSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCC
T ss_pred cCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhh
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCc---hHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCC
Q 004267 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTH---GEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 357 (764)
Q Consensus 281 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~---~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~l 357 (764)
+|.|+++..++.+|+.|....||||||||+|.+++++.... +....+.+.+|++.||++....+|+||+|||+|+.|
T Consensus 255 k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~L 334 (437)
T 4b4t_I 255 KYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETL 334 (437)
T ss_dssp SSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTC
T ss_pred ccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhc
Confidence 99999999999999999999999999999999999885432 223457788999999999988999999999999999
Q ss_pred ChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCCCchhhhHHhhhcCCCchHHHHHHHHHHHHHHHHhhccccccc
Q 004267 358 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE 437 (764)
Q Consensus 358 d~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 437 (764)
|||++|+|||++.|+++.|+.++|.+||+.|++++++..+++++.+|..|+||+|+||.++|++|++.++++..
T Consensus 335 DpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~~------ 408 (437)
T 4b4t_I 335 DPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERR------ 408 (437)
T ss_dssp CTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTC------
T ss_pred CHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987642
Q ss_pred cchhhHHHhhhhcccchhhhccccccCCC
Q 004267 438 DETIDAEILNSMAVSNEHFQTALGTSNPS 466 (764)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~al~~~~ps 466 (764)
..++.+||..|+..+.++
T Consensus 409 -----------~~It~eDf~~Al~rv~~~ 426 (437)
T 4b4t_I 409 -----------MQVTAEDFKQAKERVMKN 426 (437)
T ss_dssp -----------SCBCHHHHHHHHHHHHHH
T ss_pred -----------CccCHHHHHHHHHHHhCC
Confidence 246778888887766543
No 12
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=5.6e-46 Score=435.35 Aligned_cols=267 Identities=37% Similarity=0.663 Sum_probs=242.4
Q ss_pred eccCccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccchh
Q 004267 474 EVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 553 (764)
Q Consensus 474 ~~~~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~~ 553 (764)
..|.++|+||||++++++.|++.+.+|+.+|+.|..+|+++++|+|||||||||||+||+++|++++.+|+.++++++.+
T Consensus 197 ~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~s 276 (806)
T 3cf2_A 197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHS
T ss_pred cCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhc
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcchHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCCCC
Q 004267 554 MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDII 633 (764)
Q Consensus 554 ~~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~l 633 (764)
+|+|++++.++.+|+.|+...||||||||||++++.|+... +....+++++||++||++....+|+||+|||+|+.|
T Consensus 277 k~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~---~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~L 353 (806)
T 3cf2_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH---GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSI 353 (806)
T ss_dssp SCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCC---CTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTS
T ss_pred ccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCC---ChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhc
Confidence 99999999999999999999999999999999999887643 346789999999999999888899999999999999
Q ss_pred CccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 004267 634 DPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIER 713 (764)
Q Consensus 634 d~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~ 713 (764)
|||++||||||+.|++++||.++|.+||+.++++.++..++|+..+|..|+||+|+||.++|++|++.|+++..+....
T Consensus 354 D~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~- 432 (806)
T 3cf2_A 354 DPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDL- 432 (806)
T ss_dssp CTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGG-
T ss_pred CHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccccc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999997653210
Q ss_pred HhhhcCCCccccccccccccccccHHHHHHHHHhcCCCC
Q 004267 714 ERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRSI 752 (764)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~s~ 752 (764)
. . ............|+++||+.|++.++||.
T Consensus 433 ----~-~---~~~~~e~~~~~~v~~~Df~~Al~~~~ps~ 463 (806)
T 3cf2_A 433 ----E-D---ETIDAEVMNSLAVTMDDFRWALSQSNPSA 463 (806)
T ss_dssp ----T-C---CCCSHHHHHHCEECTTHHHHHHSSSSCCC
T ss_pred ----c-c---cccchhhhccceeeHHHHHHHHHhCCCcc
Confidence 0 0 00000011234699999999999999986
No 13
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-44 Score=395.95 Aligned_cols=249 Identities=40% Similarity=0.729 Sum_probs=230.6
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhhh
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~ 280 (764)
..++++|+||||++++++.|++.+.+|++||++|..+|+.+++|||||||||||||+||+++|++++.+|+.++++++.+
T Consensus 174 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~s 253 (437)
T 4b4t_L 174 EQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVD 253 (437)
T ss_dssp ESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred cCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhcc
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCc---hHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCC
Q 004267 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTH---GEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 357 (764)
Q Consensus 281 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~---~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~l 357 (764)
+|.|+++..++.+|..|....||||||||+|.+++++.... +....+++.+|+..||++....+++||+|||+|+.+
T Consensus 254 k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~L 333 (437)
T 4b4t_L 254 KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTL 333 (437)
T ss_dssp SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSS
T ss_pred ccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhh
Confidence 99999999999999999999999999999999999875432 233456788999999999988899999999999999
Q ss_pred ChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCCCchhhhHHhhhcCCCchHHHHHHHHHHHHHHHHhhccccccc
Q 004267 358 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE 437 (764)
Q Consensus 358 d~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 437 (764)
||+++|+|||++.|+++.|+.++|.+||+.|++++++..++++..+|..|+||+|+||.++|++|++.++++..
T Consensus 334 DpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~~~------ 407 (437)
T 4b4t_L 334 DPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDR------ 407 (437)
T ss_dssp CTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTC------
T ss_pred CHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887642
Q ss_pred cchhhHHHhhhhcccchhhhccccccCCC
Q 004267 438 DETIDAEILNSMAVSNEHFQTALGTSNPS 466 (764)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~al~~~~ps 466 (764)
..++.+||..|+..+.|+
T Consensus 408 -----------~~i~~~d~~~Al~~v~~~ 425 (437)
T 4b4t_L 408 -----------DHINPDDLMKAVRKVAEV 425 (437)
T ss_dssp -----------SSBCHHHHHHHHHHHHHT
T ss_pred -----------CCCCHHHHHHHHHHHHhc
Confidence 236778888888776554
No 14
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-44 Score=394.86 Aligned_cols=251 Identities=38% Similarity=0.670 Sum_probs=233.6
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhhh
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~ 280 (764)
..++++|+||||++++++.|++.+.+|++||++|.++|+.+++|||||||||||||++|+++|++++.+|+.++++++.+
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~ 253 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQ 253 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCS
T ss_pred CCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhh
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchH---HHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCC
Q 004267 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGE---VERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 357 (764)
Q Consensus 281 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~---~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~l 357 (764)
+|.|+++..++.+|..|....||||||||+|++++++....+. ...+.+.+|++.|+++....+|+||+|||+|+.+
T Consensus 254 ~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~L 333 (434)
T 4b4t_M 254 MYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVL 333 (434)
T ss_dssp SCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCC
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhc
Confidence 9999999999999999999999999999999999988654332 3356778999999999998999999999999999
Q ss_pred ChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCCCchhhhHHhhhcCCCchHHHHHHHHHHHHHHHHhhccccccc
Q 004267 358 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE 437 (764)
Q Consensus 358 d~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 437 (764)
||++.|+|||++.|+++.|+.++|.+||+.|++++++..++++..+|..|+||+|+||.++|++|++.++++..
T Consensus 334 D~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~------ 407 (434)
T 4b4t_M 334 DPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQ------ 407 (434)
T ss_dssp CTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTC------
T ss_pred CHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887642
Q ss_pred cchhhHHHhhhhcccchhhhccccccCCCCc
Q 004267 438 DETIDAEILNSMAVSNEHFQTALGTSNPSAL 468 (764)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~al~~~~ps~~ 468 (764)
..++.+||..|+..+.|+..
T Consensus 408 -----------~~i~~~Df~~Al~~v~~~~~ 427 (434)
T 4b4t_M 408 -----------SSVKHEDFVEGISEVQARKS 427 (434)
T ss_dssp -----------SSBCHHHHHHHHHSCSSSCC
T ss_pred -----------CCcCHHHHHHHHHHHhCCCC
Confidence 24778899999998887643
No 15
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=7.9e-45 Score=387.47 Aligned_cols=294 Identities=79% Similarity=1.255 Sum_probs=251.7
Q ss_pred cceeeeeccCccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEe
Q 004267 468 LRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVK 547 (764)
Q Consensus 468 ~~~~~~~~~~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~ 547 (764)
+++...+.|.++|++|+|++.+++.|.+.+.+|+.+++.|..+++.+++++||+||||||||++|+++|++++.+|+.++
T Consensus 2 ~~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~ 81 (301)
T 3cf0_A 2 LRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIK 81 (301)
T ss_dssp CCCCCEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEEC
T ss_pred CccccccCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEE
Confidence 46677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhcccCcchHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecC
Q 004267 548 GPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGAT 627 (764)
Q Consensus 548 ~~~l~~~~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aT 627 (764)
++++.++|+|++++.++.+|+.|+...|+++||||||.+...|+...++..+...+++++||+.|+++....+++||+||
T Consensus 82 ~~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~at 161 (301)
T 3cf0_A 82 GPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGAT 161 (301)
T ss_dssp HHHHHHHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEE
T ss_pred hHHHHhhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEec
Confidence 99999999999999999999999999999999999999999887654444556788999999999998888899999999
Q ss_pred CCCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q 004267 628 NRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENI 707 (764)
Q Consensus 628 n~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~sg~di~~~~~~a~~~a~~~~~ 707 (764)
|+++.||++++|||||+..+++++|+.++|.+||+.++++.++..++++..++..+.||+|+||.++|++|++.|+++.+
T Consensus 162 n~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~ 241 (301)
T 3cf0_A 162 NRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESI 241 (301)
T ss_dssp SCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999888899999999999999999999999999999999886
Q ss_pred HHhHHHHhhhcCCCccccccccccccccccHHHHHHHHHhcCCCCCCccc-cccccc
Q 004267 708 EKDIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRSICSDAA-AVPRYW 763 (764)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~s~~~~~~-~~~~~~ 763 (764)
................+.. ........|+++||++|++.++||+ +.++ ..+..|
T Consensus 242 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~al~~~~~s~-~~~~~~~~~~~ 296 (301)
T 3cf0_A 242 ESEIRRERERQTNPSAMEV-EEDDPVPEIRRDHFEEAMRFARRSV-SDNDIRKYEMF 296 (301)
T ss_dssp HHHC---------------------CCCBCHHHHHHHHTTCCCSS-CHHHHHHHHHH
T ss_pred Hhhhhhhhhcccccccccc-cccccCCccCHHHHHHHHHHcCCCC-CHHHHHHHHHH
Confidence 5432110000000000000 0012245799999999999999999 6554 334446
No 16
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.3e-44 Score=390.28 Aligned_cols=246 Identities=42% Similarity=0.723 Sum_probs=227.8
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhhh
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~ 280 (764)
..|+++|+||||++++++.|++.+.+|+.+|++|+.+|+.+++|||||||||||||+||+++|++++.+|+.++++++.+
T Consensus 202 e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~s 281 (467)
T 4b4t_H 202 EKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQ 281 (467)
T ss_dssp SSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhc
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCch---HHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCC
Q 004267 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHG---EVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 357 (764)
Q Consensus 281 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~---~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~l 357 (764)
+|.|+++..++.+|..|+...||||||||+|.++.+|....+ ....+.+.+++..|++.....+|+||+|||+|+.+
T Consensus 282 k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~L 361 (467)
T 4b4t_H 282 KYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTL 361 (467)
T ss_dssp CSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSB
T ss_pred ccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccC
Confidence 999999999999999999999999999999999998865432 23456778899999999988999999999999999
Q ss_pred ChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCCCchhhhHHhhhcCCCchHHHHHHHHHHHHHHHHhhccccccc
Q 004267 358 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE 437 (764)
Q Consensus 358 d~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 437 (764)
|++++|+|||++.|+++.|+.++|.+||+.|++++++..+++++.+|+.|+||+|+||.++|++|++.++++..
T Consensus 362 DpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~~------ 435 (467)
T 4b4t_H 362 DPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARR------ 435 (467)
T ss_dssp CHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHTC------
T ss_pred ChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCC------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987642
Q ss_pred cchhhHHHhhhhcccchhhhcccccc
Q 004267 438 DETIDAEILNSMAVSNEHFQTALGTS 463 (764)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~al~~~ 463 (764)
..++.+||..|+..+
T Consensus 436 -----------~~it~~Df~~Al~kV 450 (467)
T 4b4t_H 436 -----------KVATEKDFLKAVDKV 450 (467)
T ss_dssp -----------SSBCHHHHHHHHHHH
T ss_pred -----------CccCHHHHHHHHHHH
Confidence 236677787776654
No 17
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=7.1e-45 Score=381.58 Aligned_cols=266 Identities=48% Similarity=0.862 Sum_probs=220.1
Q ss_pred eccCccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccchh
Q 004267 474 EVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 553 (764)
Q Consensus 474 ~~~~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~~ 553 (764)
+.|+++|+||||++++|+.|.+.+.+|+.+++.++.+++.+++|++|+||||||||||++++|++++.+++.++++++.+
T Consensus 3 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~ 82 (274)
T 2x8a_A 3 TVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLN 82 (274)
T ss_dssp ---------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCS
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHh
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcchHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCCCC
Q 004267 554 MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDII 633 (764)
Q Consensus 554 ~~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~l 633 (764)
+|+|++++.++.+|+.++...||++|+||+|.++..|+... .....+++++++.+|++....+.++++++||+|+.|
T Consensus 83 ~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~---~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L 159 (274)
T 2x8a_A 83 MYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRE---TGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII 159 (274)
T ss_dssp STTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS
T ss_pred hhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCc---chHHHHHHHHHHHhhhcccccCCEEEEeecCChhhC
Confidence 99999999999999999999999999999999987664321 123457889999999999888899999999999999
Q ss_pred CccCCCCCccceEEeecCCCHHHHHHHHHHHhcc---CCCCCcccHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHHHHH
Q 004267 634 DPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRK---SPVSKDVDLRALAKYT--QGFSGADITEICQRACKYAIRENIE 708 (764)
Q Consensus 634 d~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~---~~~~~~~~l~~la~~~--~g~sg~di~~~~~~a~~~a~~~~~~ 708 (764)
||+++||||||+.|+|++|+.++|.+||+.++++ .++..++|+..+|..+ +||||+||.++|++|++.|+++.+.
T Consensus 160 D~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~ 239 (274)
T 2x8a_A 160 DPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMA 239 (274)
T ss_dssp CHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC-
T ss_pred CHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999954 4567889999999875 5999999999999999999998754
Q ss_pred HhHHHHhhhcCCCccccccccccccccccHHHHHHHHHhcCCCCCCcccc
Q 004267 709 KDIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRSICSDAAA 758 (764)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~s~~~~~~~ 758 (764)
.... ........|+++||++|+++++||+ +.++.
T Consensus 240 ~~~~---------------~~~~~~~~i~~~df~~al~~~~ps~-~~~~~ 273 (274)
T 2x8a_A 240 RQKS---------------GNEKGELKVSHKHFEEAFKKVRSSI-SKKDQ 273 (274)
T ss_dssp -------------------------CCBCHHHHHHHHTTCCCCC------
T ss_pred hccc---------------cccccCCeecHHHHHHHHHHhcCCC-Chhhc
Confidence 3211 0011234799999999999999999 66543
No 18
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-43 Score=385.58 Aligned_cols=245 Identities=42% Similarity=0.686 Sum_probs=227.7
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhhh
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~ 280 (764)
..++++|+||||++++++.|++.+.+|+.+|++|..+|+.+++|+|||||||||||++|+++|++++.+|+.++++++.+
T Consensus 165 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~ 244 (428)
T 4b4t_K 165 EKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVH 244 (428)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhc
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCc---hHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCC
Q 004267 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTH---GEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 357 (764)
Q Consensus 281 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~---~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~l 357 (764)
+|.|+++..++.+|..|+...|||+||||+|.++..+.... +....+++.+|++.||++....+++||+|||+|+.+
T Consensus 245 ~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~L 324 (428)
T 4b4t_K 245 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTL 324 (428)
T ss_dssp SSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSC
T ss_pred cccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhc
Confidence 99999999999999999999999999999999998874432 234568899999999999998999999999999999
Q ss_pred ChhhhccCCcceEEEec-CCChHHHHHHHHHHhcCCCCCCchhhhHHhhhcCCCchHHHHHHHHHHHHHHHHhhcccccc
Q 004267 358 DPALRRFGRFDREIDIG-VPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDL 436 (764)
Q Consensus 358 d~al~r~~rf~~~i~i~-~p~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~ 436 (764)
||+++|+|||++.|++| .|+.++|.+||+.|++++++..+++++.+|..|+||+|+||.++|++|++.++++..
T Consensus 325 D~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~~----- 399 (428)
T 4b4t_K 325 DPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNR----- 399 (428)
T ss_dssp CHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTC-----
T ss_pred ChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC-----
Confidence 99999999999999996 899999999999999999999999999999999999999999999999999987642
Q ss_pred ccchhhHHHhhhhcccchhhhccccc
Q 004267 437 EDETIDAEILNSMAVSNEHFQTALGT 462 (764)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~al~~ 462 (764)
..++.+||..|+..
T Consensus 400 ------------~~i~~~d~~~A~~~ 413 (428)
T 4b4t_K 400 ------------YVILQSDLEEAYAT 413 (428)
T ss_dssp ------------SSBCHHHHHHHHHH
T ss_pred ------------CCCCHHHHHHHHHH
Confidence 23667788877654
No 19
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=3.4e-42 Score=370.09 Aligned_cols=285 Identities=34% Similarity=0.626 Sum_probs=238.4
Q ss_pred eeeccCccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHh-CCeeEEEeccc
Q 004267 472 VVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC-QANFISVKGPE 550 (764)
Q Consensus 472 ~~~~~~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~-~~~~i~v~~~~ 550 (764)
..+.|.++|+||+|++.+|+.|.+.+.+|+.+++.|.. +..+++|+|||||||||||++|+++|+++ +.+|+.+++++
T Consensus 3 ~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~ 81 (322)
T 1xwi_A 3 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSD 81 (322)
T ss_dssp EEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCS
T ss_pred eecCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHH
Confidence 35678999999999999999999999999999998875 46778999999999999999999999999 89999999999
Q ss_pred chhcccCcchHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCC-CCCcEEEEecCCC
Q 004267 551 LLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-AKKTVFIIGATNR 629 (764)
Q Consensus 551 l~~~~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~-~~~~v~vi~aTn~ 629 (764)
+.++|+|++++.++.+|+.++...|+||||||||.+.+.|+.. ......+++++||++|+++. ...+++||+|||+
T Consensus 82 l~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~ 158 (322)
T 1xwi_A 82 LVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN---ESEAARRIKTEFLVQMQGVGVDNDGILVLGATNI 158 (322)
T ss_dssp SCCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSC---CTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESC
T ss_pred HHhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccc---cchHHHHHHHHHHHHHhcccccCCCEEEEEecCC
Confidence 9999999999999999999999999999999999999887653 24567899999999999986 4678999999999
Q ss_pred CCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 004267 630 PDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRACKYAIRENIE 708 (764)
Q Consensus 630 ~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~ 708 (764)
|+.+|++++| ||+..+++++|+.++|.+||+.++++.+.. .+.++..+|+.|+||||+||.++|++|++.|+++.+.
T Consensus 159 ~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~~~~ 236 (322)
T 1xwi_A 159 PWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQS 236 (322)
T ss_dssp TTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHHHHH
T ss_pred cccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999 999999999999999999999999887654 6788999999999999999999999999999998754
Q ss_pred HhHHHHhhh---------------cCCC---cc--cc-ccc--cccccccccHHHHHHHHHhcCCCCCCcc-ccccccc
Q 004267 709 KDIERERRR---------------RDNP---EA--MD-EDA--AEDEVSEIKAAHFEESMKFARRSICSDA-AAVPRYW 763 (764)
Q Consensus 709 ~~~~~~~~~---------------~~~~---~~--~~-~~~--~~~~~~~i~~~~f~~a~~~~~~s~~~~~-~~~~~~~ 763 (764)
...-..... .+.. +. +. .+. .....+.|+++||++|+++++||+ +.+ ...+..|
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~al~~~~ps~-~~~~~~~~~~~ 314 (322)
T 1xwi_A 237 ATHFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSNTKPTV-NEHDLLKLKKF 314 (322)
T ss_dssp CSEEEEEEEECSSCTTSEEEEEEEECCSSSTTEEECCGGGSCGGGBCCCCBCHHHHHHHHHTCCCSC-CHHHHHHHHHH
T ss_pred hhhhhhhccccccccccccccccccccccccchhhccccccccccccCCCcCHHHHHHHHHhCCCCC-CHHHHHHHHHH
Confidence 210000000 0000 00 00 000 011235799999999999999999 554 3445555
No 20
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=1.4e-40 Score=358.25 Aligned_cols=288 Identities=34% Similarity=0.629 Sum_probs=237.6
Q ss_pred eeeeeccCccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecc
Q 004267 470 ETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGP 549 (764)
Q Consensus 470 ~~~~~~~~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~ 549 (764)
....+.|+++|++|+|++.+++.|.+.+.+|..+++.+.. +..+++++||+||||||||++|+++|++++.+|+.++++
T Consensus 7 ~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~ 85 (322)
T 3eie_A 7 AILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSS 85 (322)
T ss_dssp CSEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHH
T ss_pred ceeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchH
Confidence 3456788999999999999999999999999999988877 557788999999999999999999999999999999999
Q ss_pred cchhcccCcchHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCC-CCCcEEEEecCC
Q 004267 550 ELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-AKKTVFIIGATN 628 (764)
Q Consensus 550 ~l~~~~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~-~~~~v~vi~aTn 628 (764)
++.++|+|++++.++.+|+.++...|+||||||||.+.+.|+.. ......++.++||..|+++. ...+++||+|||
T Consensus 86 ~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn 162 (322)
T 3eie_A 86 DLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG---ESEASRRIKTELLVQMNGVGNDSQGVLVLGATN 162 (322)
T ss_dssp HHHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC---------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEES
T ss_pred HHhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCC---cchHHHHHHHHHHHHhccccccCCceEEEEecC
Confidence 99999999999999999999999999999999999999877543 23467899999999999884 567899999999
Q ss_pred CCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q 004267 629 RPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRACKYAIRENI 707 (764)
Q Consensus 629 ~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~~g~sg~di~~~~~~a~~~a~~~~~ 707 (764)
+|+.||++++| ||+..+++++|+.++|.+||+.++++.+.. .+.++..+++.++||+|+||.++|++|++.|+++..
T Consensus 163 ~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~~ 240 (322)
T 3eie_A 163 IPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQ 240 (322)
T ss_dssp CGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHHH
T ss_pred ChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999 999999999999999999999999887754 677899999999999999999999999999999975
Q ss_pred HHhHH------HHhh---hcCCCcccc------cc--ccccccccccHHHHHHHHHhcCCCCCCccccccccc
Q 004267 708 EKDIE------RERR---RRDNPEAMD------ED--AAEDEVSEIKAAHFEESMKFARRSICSDAAAVPRYW 763 (764)
Q Consensus 708 ~~~~~------~~~~---~~~~~~~~~------~~--~~~~~~~~i~~~~f~~a~~~~~~s~~~~~~~~~~~~ 763 (764)
+.... .... ..+...... .+ ........||++||++|++.++||++.++...+..|
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~~~~~~~~~~~~ 313 (322)
T 3eie_A 241 SATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQF 313 (322)
T ss_dssp HCEEEEECC----CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHHHHHHHHHHSCCSSCTTHHHHHHHH
T ss_pred hhhhhhhhccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 43100 0000 000000000 00 011123579999999999999999944444445556
No 21
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=1e-39 Score=355.56 Aligned_cols=285 Identities=35% Similarity=0.667 Sum_probs=227.4
Q ss_pred eeeccCccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccc
Q 004267 472 VVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 551 (764)
Q Consensus 472 ~~~~~~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l 551 (764)
....+.+.|++|+|++.+++.|.+.+.+|+.+++.|.. +..+++++||+||||||||++|+++|.+++.+|+.++++++
T Consensus 42 ~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l 120 (355)
T 2qp9_X 42 LSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 120 (355)
T ss_dssp -----CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHH
T ss_pred cccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHH
Confidence 34567899999999999999999999999999998887 56778899999999999999999999999999999999999
Q ss_pred hhcccCcchHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCC-CCcEEEEecCCCC
Q 004267 552 LTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSA-KKTVFIIGATNRP 630 (764)
Q Consensus 552 ~~~~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~-~~~v~vi~aTn~~ 630 (764)
.++|+|++++.++.+|..++...|+||||||||.+.+.|+.. ......+++++||..|+++.. ..+++||+|||+|
T Consensus 121 ~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~---~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~ 197 (355)
T 2qp9_X 121 VSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG---ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIP 197 (355)
T ss_dssp HSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC---------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCG
T ss_pred hhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCC---cchHHHHHHHHHHHHhhcccccCCCeEEEeecCCc
Confidence 999999999999999999999999999999999999877543 245678899999999998854 5689999999999
Q ss_pred CCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 004267 631 DIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEK 709 (764)
Q Consensus 631 ~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~ 709 (764)
+.||++++| ||+..+++++|+.++|.+||+.++++.+.. .+.++..||+.++||+|+||.++|++|++.|+++....
T Consensus 198 ~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~~~~~ 275 (355)
T 2qp9_X 198 WQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSA 275 (355)
T ss_dssp GGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999 999999999999999999999999887653 67889999999999999999999999999999986432
Q ss_pred hH-------HHHhhh--cCCCc-----ccc-cc--ccccccccccHHHHHHHHHhcCCCCCCcc-ccccccc
Q 004267 710 DI-------ERERRR--RDNPE-----AMD-ED--AAEDEVSEIKAAHFEESMKFARRSICSDA-AAVPRYW 763 (764)
Q Consensus 710 ~~-------~~~~~~--~~~~~-----~~~-~~--~~~~~~~~i~~~~f~~a~~~~~~s~~~~~-~~~~~~~ 763 (764)
.. ...... .+... .+. .+ ........|+++||++|++.++||+ +.+ ...+..|
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~Al~~~~ps~-~~~~~~~~~~~ 346 (355)
T 2qp9_X 276 THFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTV-NEDDLLKQEQF 346 (355)
T ss_dssp SEEEECCC-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHHHHHHHSCCSS-CHHHHHHHHHH
T ss_pred hhhhhhccccccccccCcCCccccchhhcccccccccccccCCccHHHHHHHHHHcCCCC-CHHHHHHHHHH
Confidence 10 000000 00000 000 00 0111245799999999999999999 554 3445555
No 22
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=100.00 E-value=3.1e-39 Score=361.94 Aligned_cols=285 Identities=33% Similarity=0.619 Sum_probs=228.3
Q ss_pred eeeccCccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHh-CCeeEEEeccc
Q 004267 472 VVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC-QANFISVKGPE 550 (764)
Q Consensus 472 ~~~~~~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~-~~~~i~v~~~~ 550 (764)
....|.++|++|+|++.+++.|.+.+.+|+.+++.|.. +..+++++||+||||||||++|+++|.++ +.+|+.+++++
T Consensus 125 ~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~ 203 (444)
T 2zan_A 125 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSD 203 (444)
T ss_dssp BCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC-
T ss_pred eccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHH
Confidence 34567899999999999999999999999999988875 45677899999999999999999999999 89999999999
Q ss_pred chhcccCcchHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCC-CCCcEEEEecCCC
Q 004267 551 LLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-AKKTVFIIGATNR 629 (764)
Q Consensus 551 l~~~~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~-~~~~v~vi~aTn~ 629 (764)
+.++|+|++++.++.+|+.++...|+||||||||.+.+.|+.. ......+++++||+.|+++. ...+++||+|||+
T Consensus 204 l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~ 280 (444)
T 2zan_A 204 LVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN---ESEAARRIKTEFLVQMQGVGVDNDGILVLGATNI 280 (444)
T ss_dssp --------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCC---CCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESC
T ss_pred HHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCc---cccHHHHHHHHHHHHHhCcccCCCCEEEEecCCC
Confidence 9999999999999999999999999999999999998877653 24567899999999999986 3678999999999
Q ss_pred CCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 004267 630 PDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRACKYAIRENIE 708 (764)
Q Consensus 630 ~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~ 708 (764)
|+.||++++| ||+..+++|+|+.++|..||+.++++.+.. .+.++..||+.++||||+||.++|++|++.|+++.+.
T Consensus 281 ~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~~~~ 358 (444)
T 2zan_A 281 PWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRKVQS 358 (444)
T ss_dssp GGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHHHH
T ss_pred ccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999 999999999999999999999999887653 6788999999999999999999999999999998754
Q ss_pred HhHHHHhhhcC---------------CCcc-----cc-ccc--cccccccccHHHHHHHHHhcCCCCCCcc-ccccccc
Q 004267 709 KDIERERRRRD---------------NPEA-----MD-EDA--AEDEVSEIKAAHFEESMKFARRSICSDA-AAVPRYW 763 (764)
Q Consensus 709 ~~~~~~~~~~~---------------~~~~-----~~-~~~--~~~~~~~i~~~~f~~a~~~~~~s~~~~~-~~~~~~~ 763 (764)
...-....... ..+. +. .+. .....+.||++||++|++.++||+ +.+ ...+..|
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~a~~~~~ps~-~~~~~~~~~~~ 436 (444)
T 2zan_A 359 ATHFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMWDMLRSLSSTKPTV-NEQDLLKLKKF 436 (444)
T ss_dssp CSEEEEECCBCSSCTTSBCSCEEEEECTTSTTEEECCTTTSCTTCBCCCCEEHHHHHHHHHTCCCSC-CHHHHHHHHHH
T ss_pred hhhhhhhccccccccccccccccccCCCCcccchhcccccCchhhccCCccCHHHHHHHHHhCCCCC-CHHHHHHHHHH
Confidence 21000000000 0000 00 000 011235799999999999999999 554 3445556
No 23
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=100.00 E-value=2.6e-38 Score=353.17 Aligned_cols=250 Identities=40% Similarity=0.762 Sum_probs=222.3
Q ss_pred ccCccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccchhc
Q 004267 475 VPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM 554 (764)
Q Consensus 475 ~~~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~~~ 554 (764)
.+.++|+||+|++.+++.+.+.+.+ +.++..+.++|.++++|+||+||||||||+||+++|++.+.+|+.++++++...
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~ 88 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL 88 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHH
Confidence 3568899999999999999988765 567788999999999999999999999999999999999999999999999999
Q ss_pred ccCcchHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCCCCC
Q 004267 555 WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIID 634 (764)
Q Consensus 555 ~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld 634 (764)
|+|.++..++.+|..|+...||||||||||.+...|+.+.+.......+++++||.+||++....+++||+|||+|+.+|
T Consensus 89 ~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 89 FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhc
Confidence 99999999999999999999999999999999988765433334456789999999999987778999999999999999
Q ss_pred ccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 004267 635 PALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERE 714 (764)
Q Consensus 635 ~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~ 714 (764)
|+++||||||+.|+|++|+.++|.+|++.++++.++..++++..+|..+.||+|+||.++|++|+..|.++.
T Consensus 169 ~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~-------- 240 (476)
T 2ce7_A 169 PALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREG-------- 240 (476)
T ss_dssp GGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT--------
T ss_pred hhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcC--------
Confidence 999999999999999999999999999999999999889999999999999999999999999999887643
Q ss_pred hhhcCCCccccccccccccccccHHHHHHHHHhcCCC
Q 004267 715 RRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRS 751 (764)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~s 751 (764)
...|+.+||+.|+..+.++
T Consensus 241 ------------------~~~I~~~dl~~al~~v~~~ 259 (476)
T 2ce7_A 241 ------------------RDKITMKDFEEAIDRVIAG 259 (476)
T ss_dssp ------------------CSSBCHHHHHHHHHHHC--
T ss_pred ------------------CCeecHHHHHHHHHHHhcC
Confidence 2369999999999988654
No 24
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=100.00 E-value=6.5e-37 Score=318.93 Aligned_cols=251 Identities=39% Similarity=0.765 Sum_probs=222.2
Q ss_pred ccCccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccchhc
Q 004267 475 VPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM 554 (764)
Q Consensus 475 ~~~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~~~ 554 (764)
.+...|++++|++.+++.+.+.+.+ +.+++.+..++...++|++|+||||||||++|+++|+.++.+++.++++++.+.
T Consensus 6 ~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~ 84 (257)
T 1lv7_A 6 QIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM 84 (257)
T ss_dssp SSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTS
T ss_pred CCCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHH
Confidence 4578899999999999999987765 667778888898999999999999999999999999999999999999999999
Q ss_pred ccCcchHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCCCCC
Q 004267 555 WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIID 634 (764)
Q Consensus 555 ~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld 634 (764)
|.|.+++.++.+|+.++...|+++|+||+|.+...++...+.......++++++|+.|+++....+++||+|||+++.+|
T Consensus 85 ~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~ 164 (257)
T 1lv7_A 85 FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 164 (257)
T ss_dssp CCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSC
T ss_pred hhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCC
Confidence 99999999999999999999999999999999887765433333345678999999999988888999999999999999
Q ss_pred ccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 004267 635 PALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERE 714 (764)
Q Consensus 635 ~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~ 714 (764)
++++|||||++.+++++|+.++|.+|++.++++.++..+.++..++..+.|||++||.++|++|+..|.++.
T Consensus 165 ~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~-------- 236 (257)
T 1lv7_A 165 PALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGN-------- 236 (257)
T ss_dssp GGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT--------
T ss_pred HHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC--------
Confidence 999999999999999999999999999999999999889999999999999999999999999999887653
Q ss_pred hhhcCCCccccccccccccccccHHHHHHHHHhcCCCC
Q 004267 715 RRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRSI 752 (764)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~s~ 752 (764)
...|+.+||++|++.+....
T Consensus 237 ------------------~~~i~~~~~~~a~~~~~~~~ 256 (257)
T 1lv7_A 237 ------------------KRVVSMVEFEKAKDKIMMGL 256 (257)
T ss_dssp ------------------CSSBCHHHHHHHHHHHTTCC
T ss_pred ------------------CCcccHHHHHHHHHHHhcCC
Confidence 23699999999999887543
No 25
>3qwz_A Transitional endoplasmic reticulum ATPase; UBX, P97 binding, transport protein; HET: MLY; 2.00A {Homo sapiens} PDB: 2pjh_B
Probab=100.00 E-value=3.5e-37 Score=303.47 Aligned_cols=209 Identities=70% Similarity=1.238 Sum_probs=162.7
Q ss_pred CCCCCCCCCCCCCCCcchHHhhcCCCCCeEEEecccCCCCcEEEECHHHHhhcCCCCCCEEEEEeCCCceEEEEEEcCCC
Q 004267 2 SHPAESSDANSGKKDYSTAILERKKSPNRLVVDEAINDDNSVVGLHPDTMDKLQIFRGDTILIKGKKRKDTICIALADDT 81 (764)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~l~~~~gd~v~i~~~~~~~~~~~~~~~~~ 81 (764)
||-|..++ .++++++||||+.||.||+|+|+++.++++++|+|+|++|++|||++||+|+|+|++++.++|.||+..+
T Consensus 2 ~~~~~~~~--~~~~~~~~~~~~~~~~p~~l~V~ea~~~Drgivrl~p~~m~~Lgl~~GD~V~I~Gkr~k~Tva~v~~~~~ 79 (211)
T 3qwz_A 2 SHMASGAD--SKGDDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGXKRREAVCIVLSDDT 79 (211)
T ss_dssp --------------------------CEEEEEEECSCCCTTEEEECHHHHHHHTCCBTCEEEEECSTTCEEEEEEEECTT
T ss_pred cccccccc--ccccccchhhhhcccCCCeeEEcccccCCCcEEEECHHHHHHcCCCCCCEEEEeCCCCCcEEEEEEeCCC
Confidence 56665444 5679999999999999999999999998899999999999999999999999999988899999999989
Q ss_pred CCCCeEEEcHhHHhhcCcCCCCeEEEEecCCCCCCcEEEeccccCcccCcchhhHHHHHHHhhhhcCccccCCcEEEEec
Q 004267 82 CEQPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTIEGVTGNLFDAFLRPYFTEAYRPVRKGDLFLVRG 161 (764)
Q Consensus 82 ~~~~~i~~~~~~r~~~~~~~g~~v~v~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~ 161 (764)
++.+.|+||+.+|+|+|+++||.|+|+++..++.|++|+|+|...++.++.++++..||++||...++||.+||.|.+.+
T Consensus 80 ~~~g~Irid~~~R~N~gV~iGD~V~V~~~~~v~~A~~V~LaP~~~~i~~i~~~~~~~~lk~~l~~~~rPV~~GD~i~v~~ 159 (211)
T 3qwz_A 80 CSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRG 159 (211)
T ss_dssp SCTTEEEECHHHHHHTTCCTTCEEEEEECTTCCBCSEEEEEEBGGGCTTCCSCHHHHTTHHHHTTCCEEEETTCEEECCC
T ss_pred CCCCEEEeCHHHHhhcCCCCCCEEEEEECCCCCCceEEEEeccCcchhccCchhHHHHHHHHHhhCCceeecCCEEEEcc
Confidence 99999999999999999999999999997678999999999998776667777788999999976789999999999988
Q ss_pred CceeEEEEEEEecCCceEeeCCCceEEecCCCCccccc-ccCCCCCcccccC
Q 004267 162 GMRSVEFKVIETDPGEYCVVAPDTEIFCEGEPIKREDE-DRLDEVGYDDVGG 212 (764)
Q Consensus 162 ~~~~~~f~v~~~~p~~~~~~~~~t~i~~~~~~~~~~~~-~~~~~~~~~~i~G 212 (764)
.++.+.|+|++++|.++|+|+++|.|.+.++|+.++.. ..++.++|+||||
T Consensus 160 ~~~~v~f~Vv~t~P~g~viV~~~T~I~~~~~pv~~~~~e~~~~~VtYeDIGG 211 (211)
T 3qwz_A 160 GMRAVEFXVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDIGG 211 (211)
T ss_dssp TTSCCEEEEEEEESSSEEEECTTCEEECCSCCBCCCGGGSCCC---------
T ss_pred CCcEEEEEEEeecCCCCEEECCCcEEEEcCcccccccccccCCCcceeCCCC
Confidence 77889999999999999999999999999999876532 3678899999998
No 26
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=2.7e-36 Score=316.39 Aligned_cols=262 Identities=40% Similarity=0.710 Sum_probs=215.2
Q ss_pred CCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhhhh
Q 004267 202 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSK 281 (764)
Q Consensus 202 ~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~ 281 (764)
.+.++|+||||++++++.|++.+.+|+.++++++++++..++|++|+||||||||||+++||++++..++.+++.++.+.
T Consensus 4 ~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 4 VPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNM 83 (274)
T ss_dssp --------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSS
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhh
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCChhh
Q 004267 282 LAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPAL 361 (764)
Q Consensus 282 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld~al 361 (764)
+.++.+..++.+|+.+....|+++|+||+|.++..++........++..+++..|++...+..++++++||+|+.+|+++
T Consensus 84 ~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al 163 (274)
T 2x8a_A 84 YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAI 163 (274)
T ss_dssp TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHH
T ss_pred hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhh
Confidence 89999999999999999999999999999998876543222223467788999999988888899999999999999999
Q ss_pred hccCCcceEEEecCCChHHHHHHHHHHhcC---CCCCCchhhhHHhhhc--CCCchHHHHHHHHHHHHHHHHhhcccccc
Q 004267 362 RRFGRFDREIDIGVPDEVGRLEVLRIHTKN---MKLSDDVDLERIAKDT--HGYVGADLAALCTEAALQCIREKMDVIDL 436 (764)
Q Consensus 362 ~r~~rf~~~i~i~~p~~~~R~~il~~~~~~---~~l~~~~~l~~la~~t--~g~~~~dl~~l~~~a~~~~~~~~~~~~~~ 436 (764)
+|+|||++.|+++.|+.++|.+||+.++++ .++..++++..++..+ +||+|+||..+|++|++.++++.......
T Consensus 164 ~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~~~~~ 243 (274)
T 2x8a_A 164 LRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMARQKS 243 (274)
T ss_dssp HSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC-----
T ss_pred cCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 999999999999999999999999999854 4566788999999875 59999999999999999988765322110
Q ss_pred ccchhhHHHhhhhcccchhhhccccccCCCCcc
Q 004267 437 EDETIDAEILNSMAVSNEHFQTALGTSNPSALR 469 (764)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~al~~~~ps~~~ 469 (764)
........++.+||..|+..++|+..+
T Consensus 244 ------~~~~~~~~i~~~df~~al~~~~ps~~~ 270 (274)
T 2x8a_A 244 ------GNEKGELKVSHKHFEEAFKKVRSSISK 270 (274)
T ss_dssp ------------CCBCHHHHHHHHTTCCCCC--
T ss_pred ------cccccCCeecHHHHHHHHHHhcCCCCh
Confidence 011124578999999999999997654
No 27
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=1.9e-36 Score=320.20 Aligned_cols=252 Identities=48% Similarity=0.810 Sum_probs=232.1
Q ss_pred eeccCccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccch
Q 004267 473 VEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 552 (764)
Q Consensus 473 ~~~~~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~ 552 (764)
...|.+.|++++|++.+++.|.+.+.+++.+++.+..+|..++.++||+||||||||++|+++|..++.+++.++++++.
T Consensus 9 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~ 88 (285)
T 3h4m_A 9 DERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELV 88 (285)
T ss_dssp ESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGC
T ss_pred cCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCcchHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCCC
Q 004267 553 TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDI 632 (764)
Q Consensus 553 ~~~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ 632 (764)
+.|.|..+..++.+|..++...|+||||||+|.+.+++.....+......+.+..++.++++.....+++||+|||.++.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~ 168 (285)
T 3h4m_A 89 KKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDI 168 (285)
T ss_dssp CCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGG
T ss_pred HhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchh
Confidence 99999999999999999999999999999999999877654333344567888999999998888889999999999999
Q ss_pred CCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHhHH
Q 004267 633 IDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIE 712 (764)
Q Consensus 633 ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~ 712 (764)
+|++++|++||+..+++++|+.++|.+||+.++++..+..++++..++..+.||+|+||.++|+.|...|+++.
T Consensus 169 l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~------ 242 (285)
T 3h4m_A 169 LDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIREL------ 242 (285)
T ss_dssp BCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTT------
T ss_pred cCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc------
Confidence 99999999999999999999999999999999999988888999999999999999999999999999998764
Q ss_pred HHhhhcCCCccccccccccccccccHHHHHHHHHhcCC
Q 004267 713 RERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARR 750 (764)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~ 750 (764)
...|+.+||.+|++.+.+
T Consensus 243 --------------------~~~I~~~d~~~al~~~~~ 260 (285)
T 3h4m_A 243 --------------------RDYVTMDDFRKAVEKIME 260 (285)
T ss_dssp --------------------CSSBCHHHHHHHHHHHHH
T ss_pred --------------------cCcCCHHHHHHHHHHHHh
Confidence 236999999999998754
No 28
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=100.00 E-value=1.1e-36 Score=342.01 Aligned_cols=250 Identities=42% Similarity=0.766 Sum_probs=225.3
Q ss_pred cCccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccchhcc
Q 004267 476 PNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW 555 (764)
Q Consensus 476 ~~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~~~~ 555 (764)
+.++|+|++|+++++..+.+.+.+ +.++..+..+++..++|++|+||||||||+||+++|++++.+|+.++++++...|
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~ 104 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 104 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSC
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhh
Confidence 678999999999999999988765 5667888999999999999999999999999999999999999999999999999
Q ss_pred cCcchHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCCCCCc
Q 004267 556 FGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDP 635 (764)
Q Consensus 556 ~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~ 635 (764)
+|.....++.+|+.++...||++|+||||.+...++...+.......+.++++|.+|++......++++++||+|+.||+
T Consensus 105 ~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~ 184 (499)
T 2dhr_A 105 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDP 184 (499)
T ss_dssp TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCT
T ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCc
Confidence 99999999999999998899999999999998876543222233456789999999999988888999999999999999
Q ss_pred cCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 004267 636 ALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERER 715 (764)
Q Consensus 636 allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~ 715 (764)
+++||||||+.|+|++|+.++|.+||+.++++.++..++++..+|..+.||+|+||+++|++|+..|.++.
T Consensus 185 aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~~--------- 255 (499)
T 2dhr_A 185 ALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREG--------- 255 (499)
T ss_dssp TTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTTC---------
T ss_pred ccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC---------
Confidence 99999999999999999999999999999999899999999999999999999999999999998876542
Q ss_pred hhcCCCccccccccccccccccHHHHHHHHHhcCCCC
Q 004267 716 RRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRSI 752 (764)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~s~ 752 (764)
...|+++||++|++.+.++.
T Consensus 256 -----------------~~~It~~dl~~al~~v~~~~ 275 (499)
T 2dhr_A 256 -----------------RRKITMKDLEEAADRVMMLP 275 (499)
T ss_dssp -----------------CSSCCSHHHHHHHHHHTTCS
T ss_pred -----------------CCccCHHHHHHHHHHHhccc
Confidence 23699999999999887654
No 29
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=7e-37 Score=344.65 Aligned_cols=264 Identities=38% Similarity=0.681 Sum_probs=235.6
Q ss_pred CccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccchhccc
Q 004267 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWF 556 (764)
Q Consensus 477 ~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~~~~~ 556 (764)
.+.|++|+|++..++.|.+.+.+++.+++.|..+|..++.++||+||||||||++|+++|.+++.+|+.++++++.+.|+
T Consensus 200 ~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~ 279 (489)
T 3hu3_A 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLA 279 (489)
T ss_dssp CCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCT
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhc
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCCCCCcc
Q 004267 557 GESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPA 636 (764)
Q Consensus 557 g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~a 636 (764)
|+++..++.+|+.|+...|++|||||||.+.+.++.. ......+++++||..|++.....+++||+|||+++.||++
T Consensus 280 g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~---~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~a 356 (489)
T 3hu3_A 280 GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT---HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356 (489)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSC---CCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGG
T ss_pred chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccc---cchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHH
Confidence 9999999999999999999999999999999877543 2346678999999999998888899999999999999999
Q ss_pred CCCCCccceEEeecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHhh
Q 004267 637 LLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERR 716 (764)
Q Consensus 637 llrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~ 716 (764)
++|+|||+..+++++|+.++|.+||+.+++..++..++++..++..+.||+|+||.++|++|++.|+++..+..
T Consensus 357 l~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i------ 430 (489)
T 3hu3_A 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLI------ 430 (489)
T ss_dssp GGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTC------
T ss_pred HhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhccccc------
Confidence 99999999999999999999999999999999999999999999999999999999999999999998764321
Q ss_pred hcCCCccccccccccccccccHHHHHHHHHhcCCCC
Q 004267 717 RRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRSI 752 (764)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~s~ 752 (764)
....... .........|+++||++|++.++||.
T Consensus 431 --~~~~~~~-~~~~~~~~~vt~edf~~Al~~~~ps~ 463 (489)
T 3hu3_A 431 --DLEDETI-DAEVMNSLAVTMDDFRWALSQSNPSA 463 (489)
T ss_dssp --CTTCSSC-CHHHHHHCCBCHHHHHHHHTSHHHHH
T ss_pred --ccccccc-chhhcccCcCCHHHHHHHHHhCCchh
Confidence 0000000 00011234699999999999999986
No 30
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=100.00 E-value=1.2e-35 Score=308.89 Aligned_cols=247 Identities=43% Similarity=0.798 Sum_probs=215.7
Q ss_pred eeeccCccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccc
Q 004267 472 VVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 551 (764)
Q Consensus 472 ~~~~~~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l 551 (764)
..+.|.++|++++|++.++..+++.+.+ ..++..+..+++..++|++|+||||||||||++++|+..+.+++.+++.++
T Consensus 7 ~~~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~ 85 (254)
T 1ixz_A 7 LTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDF 85 (254)
T ss_dssp -CCCCSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred ccCCCCCCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHH
Confidence 3456789999999999999999887654 456678888999999999999999999999999999999999999999999
Q ss_pred hhcccCcchHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCC
Q 004267 552 LTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPD 631 (764)
Q Consensus 552 ~~~~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~ 631 (764)
...+.|...+.++.+|+.++...|+++|+||+|.+...++...+.......+.+++++.+|++......++++++||+|+
T Consensus 86 ~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~ 165 (254)
T 1ixz_A 86 VEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPD 165 (254)
T ss_dssp HHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGG
T ss_pred HHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCch
Confidence 98899998999999999998888999999999999877653211223345678999999999998888899999999999
Q ss_pred CCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHhH
Q 004267 632 IIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDI 711 (764)
Q Consensus 632 ~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~ 711 (764)
.||++++|+|||++.+++++|+.++|.+||+.++++.++..++++..+|..++||+|+||.++|++|+..|.++.
T Consensus 166 ~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~----- 240 (254)
T 1ixz_A 166 ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREG----- 240 (254)
T ss_dssp GSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT-----
T ss_pred hCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc-----
Confidence 999999999999999999999999999999999998888889999999999999999999999999998887643
Q ss_pred HHHhhhcCCCccccccccccccccccHHHHHHHH
Q 004267 712 ERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESM 745 (764)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~ 745 (764)
...|+.+||++|+
T Consensus 241 ---------------------~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 241 ---------------------RRKITMKDLEEAA 253 (254)
T ss_dssp ---------------------CSSBCHHHHHHHT
T ss_pred ---------------------CCCcCHHHHHHHh
Confidence 2369999999986
No 31
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.9e-34 Score=309.72 Aligned_cols=227 Identities=38% Similarity=0.687 Sum_probs=209.3
Q ss_pred CCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHh-CCeEEEEechhhhh
Q 004267 202 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET-GAFFFCINGPEIMS 280 (764)
Q Consensus 202 ~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l-~~~~i~v~~~~l~~ 280 (764)
.++++|+||+|++++++.|++.+.+|+++|++|.. +..+++++||+||||||||+||+++|+++ +.+++.++++++.+
T Consensus 6 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~ 84 (322)
T 1xwi_A 6 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS 84 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCC
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHh
Confidence 56789999999999999999999999999999985 36778999999999999999999999999 88999999999999
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccC-CCeEEEEEecCCCCCCCh
Q 004267 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKS-RAHVIVIGATNRPNSIDP 359 (764)
Q Consensus 281 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~-~~~v~vI~atn~~~~ld~ 359 (764)
.+.|+++..++.+|+.+....|++|||||+|.+++++.........++..+++..|+++.. ..+++||++||+++.+|+
T Consensus 85 ~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~ 164 (322)
T 1xwi_A 85 KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDS 164 (322)
T ss_dssp SSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCH
T ss_pred hhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCH
Confidence 9999999999999999999999999999999999988766666778899999999998863 578999999999999999
Q ss_pred hhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCC-CchhhhHHhhhcCCCchHHHHHHHHHHHHHHHHhhc
Q 004267 360 ALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTEAALQCIREKM 431 (764)
Q Consensus 360 al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~ 431 (764)
+++| ||+..+.++.|+.++|.+|++.+++..+.. .+.++..+++.++||+|+|+..+|++|++.++++..
T Consensus 165 al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~~~ 235 (322)
T 1xwi_A 165 AIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQ 235 (322)
T ss_dssp HHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999 999999999999999999999999887654 677899999999999999999999999998887754
No 32
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.2e-35 Score=322.00 Aligned_cols=270 Identities=36% Similarity=0.678 Sum_probs=225.4
Q ss_pred eccCccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccchh
Q 004267 474 EVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 553 (764)
Q Consensus 474 ~~~~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~~ 553 (764)
..+.+.|++++|++.+++.|.+.+.+++.+++.+...+ .+++++||+||||||||++|+++|.+++.+|+.++++++.+
T Consensus 77 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~ 155 (357)
T 3d8b_A 77 HGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS 155 (357)
T ss_dssp CSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhc
Confidence 44678999999999999999999999988888877654 56788999999999999999999999999999999999999
Q ss_pred cccCcchHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCC--CCCcEEEEecCCCCC
Q 004267 554 MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS--AKKTVFIIGATNRPD 631 (764)
Q Consensus 554 ~~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~--~~~~v~vi~aTn~~~ 631 (764)
+|+|+.++.++.+|..++...|+||||||||.+...|+.. ......+++++||..|++.. ...+++||+|||+++
T Consensus 156 ~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~ 232 (357)
T 3d8b_A 156 KWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDG---EHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQ 232 (357)
T ss_dssp SSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC---------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGG
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCC---cchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChh
Confidence 9999999999999999999999999999999998876543 23467789999999999875 346899999999999
Q ss_pred CCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 004267 632 IIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKD 710 (764)
Q Consensus 632 ~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~ 710 (764)
.+|++++| ||+..+++++|+.++|.+|++.++++.+.. .+.++..+++.+.||+|+||.++|++|...++++..+..
T Consensus 233 ~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~ 310 (357)
T 3d8b_A 233 EIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTAD 310 (357)
T ss_dssp GBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC--
T ss_pred hCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999 999999999999999999999999776543 456789999999999999999999999999998642211
Q ss_pred HHHHhhhcCCCccccccccccccccccHHHHHHHHHhcCCCCCCccccccccc
Q 004267 711 IERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRSICSDAAAVPRYW 763 (764)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~s~~~~~~~~~~~~ 763 (764)
.. .........|+++||++|++.++||++.++...+..|
T Consensus 311 ~~--------------~~~~~~~~~i~~~d~~~al~~~~ps~~~~~~~~~~~~ 349 (357)
T 3d8b_A 311 IA--------------TITPDQVRPIAYIDFENAFRTVRPSVSPKDLELYENW 349 (357)
T ss_dssp ----------------------CCCBCHHHHHHHHHHHGGGCCCCCHHHHHHH
T ss_pred hc--------------cccccccCCcCHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 10 0011234579999999999999999944444445666
No 33
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=100.00 E-value=2.2e-35 Score=307.88 Aligned_cols=250 Identities=40% Similarity=0.728 Sum_probs=202.0
Q ss_pred cCccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccchhcc
Q 004267 476 PNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW 555 (764)
Q Consensus 476 ~~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~~~~ 555 (764)
|.+.|++++|++.+++.+.+.+.+ +.+++.+..+|...++++||+||||||||++|+++|.+++.+++.++++++.+.|
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 79 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVI 79 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSS
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhc
Confidence 467899999999999999988765 6677888888999999999999999999999999999999999999999999999
Q ss_pred cCcchHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCC-CCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCCCCC
Q 004267 556 FGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGD-AGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIID 634 (764)
Q Consensus 556 ~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~-~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld 634 (764)
.|.++..++.+|+.++...|+||||||+|.+...++..... ......+.++++|.++++.....+++||+|||.++.+|
T Consensus 80 ~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld 159 (262)
T 2qz4_A 80 GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILD 159 (262)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGG
T ss_pred cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcC
Confidence 99999999999999999999999999999998776432111 11234567899999999987778999999999999999
Q ss_pred ccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCCCccc--HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHhHH
Q 004267 635 PALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVD--LRALAKYTQGFSGADITEICQRACKYAIRENIEKDIE 712 (764)
Q Consensus 635 ~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~--l~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~ 712 (764)
++++|||||+..+++++|+.++|.+||+.++++.++..+.+ +..++..+.||+|+||.++|++|+..|.++.
T Consensus 160 ~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~------ 233 (262)
T 2qz4_A 160 GALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREG------ 233 (262)
T ss_dssp SGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC-----------
T ss_pred HHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcC------
Confidence 99999999999999999999999999999998887765544 4789999999999999999999999887653
Q ss_pred HHhhhcCCCccccccccccccccccHHHHHHHHHhcCCCC
Q 004267 713 RERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRSI 752 (764)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~s~ 752 (764)
...|+.+||++|++.+.++.
T Consensus 234 --------------------~~~i~~~d~~~a~~~~~~~~ 253 (262)
T 2qz4_A 234 --------------------HTSVHTLNFEYAVERVLAGT 253 (262)
T ss_dssp -----------------------CCBCCHHHHHHHHHHHH
T ss_pred --------------------CCCCCHHHHHHHHHHhccCh
Confidence 13699999999999988775
No 34
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=100.00 E-value=2.3e-35 Score=313.92 Aligned_cols=269 Identities=36% Similarity=0.641 Sum_probs=224.0
Q ss_pred eccCccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccchh
Q 004267 474 EVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 553 (764)
Q Consensus 474 ~~~~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~~ 553 (764)
..+.+.|++++|++.+++.+.+.+.++..+++.+..++ .++.++||+||||||||++|+++|++++.+|+.++++++.+
T Consensus 14 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~ 92 (297)
T 3b9p_A 14 GGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTS 92 (297)
T ss_dssp CSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSS
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhh
Confidence 45678999999999999999999999888888887665 45788999999999999999999999999999999999999
Q ss_pred cccCcchHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCC---CcEEEEecCCCC
Q 004267 554 MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAK---KTVFIIGATNRP 630 (764)
Q Consensus 554 ~~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~---~~v~vi~aTn~~ 630 (764)
.|+|+++..++.+|..++...|++|||||+|.+...+.... .....++.++||..+++.... .+++||+|||+|
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~ 169 (297)
T 3b9p_A 93 KYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSE---HEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRP 169 (297)
T ss_dssp SSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC--------CCSHHHHHHHHHHHHHCC------CEEEEEEESCG
T ss_pred cccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCc---chHHHHHHHHHHHHHhcccccCCCCcEEEEeecCCh
Confidence 99999999999999999999999999999999998765432 235578889999999987543 579999999999
Q ss_pred CCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 004267 631 DIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEK 709 (764)
Q Consensus 631 ~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~ 709 (764)
+.+|++++| ||+..+++++|+.++|..|++.++++.+.. .+.++..+++.+.||+|+||.++|++|+..|+++....
T Consensus 170 ~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~ 247 (297)
T 3b9p_A 170 QELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVE 247 (297)
T ss_dssp GGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC--
T ss_pred hhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999 999999999999999999999999876543 45678999999999999999999999999999875322
Q ss_pred hHHHHhhhcCCCccccccccccccccccHHHHHHHHHhcCCCCCCcc-ccccccc
Q 004267 710 DIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRSICSDA-AAVPRYW 763 (764)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~s~~~~~-~~~~~~~ 763 (764)
... .........|+.+||..|++.++||+ +.+ ...+..|
T Consensus 248 ~~~--------------~~~~~~~~~i~~~d~~~a~~~~~~s~-~~~~~~~~~~~ 287 (297)
T 3b9p_A 248 QVK--------------CLDISAMRAITEQDFHSSLKRIRRSV-APQSLNSYEKW 287 (297)
T ss_dssp --------------------CCCCCCCCHHHHHHHTTSCCCSS-CHHHHHHHHHH
T ss_pred hcc--------------cccccccCCcCHHHHHHHHHHcCCCC-CHHHHHHHHHH
Confidence 110 00011235799999999999999999 443 3344555
No 35
>3tiw_A Transitional endoplasmic reticulum ATPase; beta-barrel alpha-helix, transport protein ATPase ubiquitin ubiquitin, phosphorylation; 1.80A {Homo sapiens} PDB: 3qq8_A 3qq7_A 3qc8_A
Probab=100.00 E-value=4e-34 Score=276.73 Aligned_cols=183 Identities=70% Similarity=1.249 Sum_probs=151.9
Q ss_pred CCCCCCCcchHHhhcCCCCCeEEEecccCCCCcEEEECHHHHhhcCCCCCCEEEEEeCCCceEEEEEEcCCCCCCCeEEE
Q 004267 10 ANSGKKDYSTAILERKKSPNRLVVDEAINDDNSVVGLHPDTMDKLQIFRGDTILIKGKKRKDTICIALADDTCEQPKIRM 89 (764)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~l~~~~gd~v~i~~~~~~~~~~~~~~~~~~~~~~i~~ 89 (764)
+..++++++||||+.||.||+|+|+++.++++++|||+|++|++|||++||+|+|+|++++.++|.+||..+++.+.|+|
T Consensus 5 ~~~~~~~~~~~~~~~~~~p~~l~V~ea~~~D~givrl~p~~m~~Lgl~~GD~V~I~Gkr~k~Tva~v~~~~~~~~g~Iri 84 (187)
T 3tiw_A 5 SDTKSDDLSTAILKQKSRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRM 84 (187)
T ss_dssp -----------------CCCEEEEEECSSCCTTEEEECHHHHHHHTCCTTCEEEEECSTTCEEEEEEEECTTSCTTEEEE
T ss_pred ccccccccchhhhhcccCCCeEEEcccccCCCcEEEECHHHHHHcCCCCCCEEEEECCCCCeEEEEEEECCCCCCCEEEe
Confidence 33567999999999999999999999999889999999999999999999999999998889999999998999999999
Q ss_pred cHhHHhhcCcCCCCeEEEEecCCCCCCcEEEeccccCcccCcchhhHHHHHHHhhhhcCccccCCcEEEEecCceeEEEE
Q 004267 90 NKVVRSNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTIEGVTGNLFDAFLRPYFTEAYRPVRKGDLFLVRGGMRSVEFK 169 (764)
Q Consensus 90 ~~~~r~~~~~~~g~~v~v~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~f~ 169 (764)
|+.+|+|+|+++||.|+|+++..+++|++|+++|..+++.++.++++..||++||...++||.+||.|.+.+.++.+.|+
T Consensus 85 d~~~R~N~gV~iGD~V~V~~~~~v~~A~~V~LaP~~~~i~~i~~~~~~~~lk~~l~~~~rpV~~GD~i~v~~~~~~v~f~ 164 (187)
T 3tiw_A 85 NRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFK 164 (187)
T ss_dssp CHHHHHHTTCCTTCEEEEEECTTCEECSEEEEEECCCC-----CCHHHHTHHHHHTTTCCEEETTCEEEEECSSSEEEEE
T ss_pred CHHHHhhcCCCCCCEEEEEECCCCCCceEEEEeccccchhhccchhHHHHHHHHhccCCceeeCCCEEEEccCCCEEEEE
Confidence 99999999999999999999767899999999999877666666778899999998778999999999998888899999
Q ss_pred EEEecCCceEeeCCCceEEecCC
Q 004267 170 VIETDPGEYCVVAPDTEIFCEGE 192 (764)
Q Consensus 170 v~~~~p~~~~~~~~~t~i~~~~~ 192 (764)
|++++|.++|+|+++|.|.++|+
T Consensus 165 Vv~t~P~~~v~V~~~T~I~~eg~ 187 (187)
T 3tiw_A 165 VVETDPSPYCIVAPDTVIHCEGE 187 (187)
T ss_dssp EEEEESSSEEECCTTCEEECCC-
T ss_pred EEEecCCCCEEECCCcEEEecCC
Confidence 99999999999999999998763
No 36
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=100.00 E-value=3.5e-34 Score=343.27 Aligned_cols=435 Identities=22% Similarity=0.322 Sum_probs=298.3
Q ss_pred CCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCeEEEEe
Q 004267 205 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFCIN 274 (764)
Q Consensus 205 ~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l----------~~~~i~v~ 274 (764)
-.++++.|.+++++.+.+.+.. ..+.+++|+||||||||+++++++..+ +..++.++
T Consensus 183 ~~~d~~iGr~~~i~~l~~~l~~-------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~ 249 (758)
T 1r6b_X 183 GGIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 249 (758)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECC
T ss_pred CCCCCccCCHHHHHHHHHHHhc-------------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEc
Confidence 3678899999999988777653 246789999999999999999999987 56677777
Q ss_pred chhhh--hhccchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecC
Q 004267 275 GPEIM--SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATN 352 (764)
Q Consensus 275 ~~~l~--~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn 352 (764)
...+. ..+.|+.+..++.+|+.+....+++|||||++.+.+.+....+.. ...+.+..+..+..+.+|++|+
T Consensus 250 ~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~------~~~~~L~~~l~~~~~~~I~at~ 323 (758)
T 1r6b_X 250 IGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQV------DAANLIKPLLSSGKIRVIGSTT 323 (758)
T ss_dssp CC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHH------HHHHHHSSCSSSCCCEEEEEEC
T ss_pred HHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchH------HHHHHHHHHHhCCCeEEEEEeC
Confidence 66665 467788999999999999888889999999999987765432221 2234444555567788899888
Q ss_pred CC-----CCCChhhhccCCcceEEEecCCChHHHHHHHHHHhcC------CCCCCchhhhHHhhhcCCC-----chHHHH
Q 004267 353 RP-----NSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKN------MKLSDDVDLERIAKDTHGY-----VGADLA 416 (764)
Q Consensus 353 ~~-----~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~------~~l~~~~~l~~la~~t~g~-----~~~dl~ 416 (764)
.+ ..+|+++.+ ||. .+.++.|+.++|.+|++.+... ..+ .+..+..++..+.+| .+..+.
T Consensus 324 ~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~-~~~al~~~~~~s~~~i~~~~lp~~~i 399 (758)
T 1r6b_X 324 YQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRY-TAKAVRAAVELAVKYINDRHLPDKAI 399 (758)
T ss_dssp HHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHCTTSCTTHHHH
T ss_pred chHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHhhhhcccccCchHHH
Confidence 64 356888988 896 6999999999999999876543 222 233456666666554 344666
Q ss_pred HHHHHHHHHHHHhhccccccccchhhHHHhhhhcccchhhhccccccCCCCcceeeeeccCcccc--------------c
Q 004267 417 ALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVSNEHFQTALGTSNPSALRETVVEVPNVSWE--------------D 482 (764)
Q Consensus 417 ~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~ps~~~~~~~~~~~v~~~--------------~ 482 (764)
.++.+++......... . ....++.+++..++..... .....+.|+ +
T Consensus 400 ~lld~a~~~~~~~~~~--~-----------~~~~v~~~di~~~~~~~~~-------ip~~~~~~~~~~~l~~l~~~l~~~ 459 (758)
T 1r6b_X 400 DVIDEAGARARLMPVS--K-----------RKKTVNVADIESVVARIAR-------IPEKSVSQSDRDTLKNLGDRLKML 459 (758)
T ss_dssp HHHHHHHHHHHHSSSC--C-----------CCCSCCHHHHHHHHHHHSC-------CCCCCSSSSHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhccccc--c-----------cCCccCHHHHHHHHHHhcC-------CCccccchhHHHHHHHHHHHHHhh
Confidence 7777765433211000 0 0112333344333322110 001122333 3
Q ss_pred cccchhhhhcccceeeccCCChhhhhhccC----CCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccchhc----
Q 004267 483 IGGLENVKRELQETVQYPVEHPEKFEKFGM----SPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM---- 554 (764)
Q Consensus 483 i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~----~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~~~---- 554 (764)
+.|++.+++.+...+.. ...|+ ++..++||+||||||||++|+++|..++.+|+.++++++..+
T Consensus 460 v~g~~~~~~~l~~~i~~--------~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~ 531 (758)
T 1r6b_X 460 VFGQDKAIEALTEAIKM--------ARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVS 531 (758)
T ss_dssp SCSCHHHHHHHHHHHHH--------HHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCS
T ss_pred ccCHHHHHHHHHHHHHH--------HhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHh
Confidence 55666555555443321 11233 233469999999999999999999999999999999987643
Q ss_pred --------ccCcchHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCC---------C
Q 004267 555 --------WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS---------A 617 (764)
Q Consensus 555 --------~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~---------~ 617 (764)
|+|..+. +.++...+..+++|+|||||+.+ ...+++.|++.|+... .
T Consensus 532 ~l~g~~~g~~g~~~~--~~l~~~~~~~~~~vl~lDEi~~~--------------~~~~~~~Ll~~le~~~~~~~~g~~~~ 595 (758)
T 1r6b_X 532 RLIGAPPGYVGFDQG--GLLTDAVIKHPHAVLLLDEIEKA--------------HPDVFNILLQVMDNGTLTDNNGRKAD 595 (758)
T ss_dssp SSCCCCSCSHHHHHT--THHHHHHHHCSSEEEEEETGGGS--------------CHHHHHHHHHHHHHSEEEETTTEEEE
T ss_pred hhcCCCCCCcCcccc--chHHHHHHhCCCcEEEEeCcccc--------------CHHHHHHHHHHhcCcEEEcCCCCEEe
Confidence 4443222 23455556677899999999985 2468888888888431 1
Q ss_pred CCcEEEEecCCCCC-------------------------CCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccC----
Q 004267 618 KKTVFIIGATNRPD-------------------------IIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKS---- 668 (764)
Q Consensus 618 ~~~v~vi~aTn~~~-------------------------~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~---- 668 (764)
..+++||+|||.+. .++|++++ |||.+|.|++|+.+++..|++.++++.
T Consensus 596 ~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~ 673 (758)
T 1r6b_X 596 FRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQVQL 673 (758)
T ss_dssp CTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHHHHHHHH
Confidence 25788999999854 57788887 999999999999999999999988632
Q ss_pred ---CCC---CcccHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHHHHH
Q 004267 669 ---PVS---KDVDLRALAKYT--QGFSGADITEICQRACKYAIRENIE 708 (764)
Q Consensus 669 ---~~~---~~~~l~~la~~~--~g~sg~di~~~~~~a~~~a~~~~~~ 708 (764)
.+. ++.-++.|++.. ..++.+++.++++.+...++.+.+-
T Consensus 674 ~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~~l~~~~l 721 (758)
T 1r6b_X 674 DQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELL 721 (758)
T ss_dssp HHTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTHHHHHHHH
T ss_pred HHCCcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHHHHHHHHHH
Confidence 111 122355666543 4567899999999999887776643
No 37
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=3.6e-34 Score=305.15 Aligned_cols=267 Identities=40% Similarity=0.729 Sum_probs=228.0
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhhh
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~ 280 (764)
..+.++|+||+|++++++.|++++.+|+.+|+.|.++++.++.++||+||||||||++|+++|++++.+++.++++++.+
T Consensus 8 ~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~ 87 (301)
T 3cf0_A 8 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 87 (301)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHH
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHh
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCC---chHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCC
Q 004267 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT---HGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 357 (764)
Q Consensus 281 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~l 357 (764)
.+.|+.+..++.+|+.+....|++|||||+|.+.+.++.. .+....++..+|+..|+++....+++||++||+++.+
T Consensus 88 ~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~l 167 (301)
T 3cf0_A 88 MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDII 167 (301)
T ss_dssp HHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGS
T ss_pred hhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCcccc
Confidence 9999999999999999999999999999999998765321 1223346778899999988777899999999999999
Q ss_pred ChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCCCchhhhHHhhhcCCCchHHHHHHHHHHHHHHHHhhccccccc
Q 004267 358 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE 437 (764)
Q Consensus 358 d~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 437 (764)
|+++.|+|||+..++++.|+.++|.+|++.+++..++..++++..++..++||+|+|+..+|++|++.++++........
T Consensus 168 d~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~~~~~~~ 247 (301)
T 3cf0_A 168 DPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRR 247 (301)
T ss_dssp CGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred ChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999999999999999999988887888899999999999999999999999988877653211100
Q ss_pred cch-------hhH-HHhhhhcccchhhhccccccCCCC
Q 004267 438 DET-------IDA-EILNSMAVSNEHFQTALGTSNPSA 467 (764)
Q Consensus 438 ~~~-------~~~-~~~~~~~~~~~~~~~al~~~~ps~ 467 (764)
... ... .......++.+||..|+...+|+.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s~ 285 (301)
T 3cf0_A 248 ERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSV 285 (301)
T ss_dssp ------------------CCCBCHHHHHHHHTTCCCSS
T ss_pred hhhcccccccccccccccCCccCHHHHHHHHHHcCCCC
Confidence 000 000 001124578899999999887753
No 38
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=100.00 E-value=1.4e-33 Score=337.63 Aligned_cols=442 Identities=20% Similarity=0.311 Sum_probs=280.2
Q ss_pred CCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCeEEEE
Q 004267 204 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFCI 273 (764)
Q Consensus 204 ~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l----------~~~~i~v 273 (764)
+-.++++.|.+++++++.+++.. ....++||+||||||||++|+++|..+ +..++.+
T Consensus 176 ~~~ld~iiG~~~~i~~l~~~l~~-------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~ 242 (758)
T 3pxi_A 176 EDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTL 242 (758)
T ss_dssp SSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC
T ss_pred hCCCCCccCchHHHHHHHHHHhC-------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEe
Confidence 34678899999999999887754 235679999999999999999999997 6677777
Q ss_pred echhhhhhccchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCC
Q 004267 274 NGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNR 353 (764)
Q Consensus 274 ~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~ 353 (764)
++ ..++.|+.+..++.+|+.+....++||||| + . .. ..+.+.....++.+.+|++||.
T Consensus 243 ~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD---------~-~-----~~----~~~~L~~~l~~~~v~~I~at~~ 300 (758)
T 3pxi_A 243 DM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID---------A-A-----ID----ASNILKPSLARGELQCIGATTL 300 (758)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC---------C------------------CCCTTSSSCEEEEECCT
T ss_pred cc---cccccchHHHHHHHHHHHHHhcCCEEEEEc---------C-c-----hh----HHHHHHHHHhcCCEEEEeCCCh
Confidence 76 456788888899999999999999999999 0 0 01 1122233334668899999998
Q ss_pred CC-----CCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCC-----CchhhhHHhhhcC-----CCchHHHHHH
Q 004267 354 PN-----SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-----DDVDLERIAKDTH-----GYVGADLAAL 418 (764)
Q Consensus 354 ~~-----~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-----~~~~l~~la~~t~-----g~~~~dl~~l 418 (764)
.+ .+++++++ || ..+.++.|+.+++.+||+.+...+... .+..+..++..++ +|.+.....+
T Consensus 301 ~~~~~~~~~d~al~r--Rf-~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~l 377 (758)
T 3pxi_A 301 DEYRKYIEKDAALER--RF-QPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDL 377 (758)
T ss_dssp TTTHHHHTTCSHHHH--SE-EEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHH
T ss_pred HHHHHHhhccHHHHh--hC-cEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHHH
Confidence 88 79999999 99 569999999999999999776654321 2333555555444 4555666677
Q ss_pred HHHHHHHHHHhhccc-ccccc--ch---hhHH-------------------------H-------------hhhhcccch
Q 004267 419 CTEAALQCIREKMDV-IDLED--ET---IDAE-------------------------I-------------LNSMAVSNE 454 (764)
Q Consensus 419 ~~~a~~~~~~~~~~~-~~~~~--~~---~~~~-------------------------~-------------~~~~~~~~~ 454 (764)
+.+|+.......... ..+.. .. ...+ . .....++.+
T Consensus 378 l~~a~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~ 457 (758)
T 3pxi_A 378 IDEAGSKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENSEVTVD 457 (758)
T ss_dssp HHHHHHHHHHHTTC--CCTHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHSGGGHHHHCC---CCTH
T ss_pred HHHHHHHHHhhccCCCcchhhHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcccCHH
Confidence 776654332211100 00000 00 0000 0 000111222
Q ss_pred hhhccccccC--C-CCcc----eeeeeccCccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCC
Q 004267 455 HFQTALGTSN--P-SALR----ETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCG 527 (764)
Q Consensus 455 ~~~~al~~~~--p-s~~~----~~~~~~~~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtG 527 (764)
++...+.... | ..+. +........-..++.|++.+++.+.+.+....... ....++..++||+||||||
T Consensus 458 ~i~~~v~~~~~ip~~~~~~~~~~~l~~l~~~l~~~viGq~~a~~~l~~~i~~~~~~~----~~~~~p~~~~Ll~Gp~GtG 533 (758)
T 3pxi_A 458 DIAMVVSSWTGVPVSKIAQTETDKLLNMENILHSRVIGQDEAVVAVAKAVRRARAGL----KDPKRPIGSFIFLGPTGVG 533 (758)
T ss_dssp HHHHHHHTTC-------CHHHHSCC-CHHHHHHTTSCSCHHHHHHHHHHHHHHTTTC----SCTTSCSEEEEEESCTTSS
T ss_pred HHHHHHHHHhCCChHHhhHHHHHHHHHHHHHHhCcCcChHHHHHHHHHHHHHHHccc----CCCCCCceEEEEECCCCCC
Confidence 2221111110 0 0000 00001111123457788887777766554321100 0011222359999999999
Q ss_pred hhHHHHHHHHHh---CCeeEEEecccchhcccCcchHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHH
Q 004267 528 KTLLAKAIANEC---QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRV 604 (764)
Q Consensus 528 KT~lak~lA~~~---~~~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~ 604 (764)
||++|+++|..+ +.+|+.++++++...+... .+.++...+..+++|+|||||+.+ ...+
T Consensus 534 KT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~----~~~l~~~~~~~~~~vl~lDEi~~~--------------~~~~ 595 (758)
T 3pxi_A 534 KTELARALAESIFGDEESMIRIDMSEYMEKHSTS----GGQLTEKVRRKPYSVVLLDAIEKA--------------HPDV 595 (758)
T ss_dssp HHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC-------CHHHHHHCSSSEEEEECGGGS--------------CHHH
T ss_pred HHHHHHHHHHHhcCCCcceEEEechhcccccccc----cchhhHHHHhCCCeEEEEeCcccc--------------CHHH
Confidence 999999999987 6889999999998776654 334455566677899999999875 2467
Q ss_pred HHHHHHhhcCCC---------CCCcEEEEecCCCCCC------------CCccCCCCCccceEEeecCCCHHHHHHHHHH
Q 004267 605 LNQLLTEMDGMS---------AKKTVFIIGATNRPDI------------IDPALLRPGRLDQLIYIPLPDEDSRHQIFKA 663 (764)
Q Consensus 605 ~~~lL~~ld~~~---------~~~~v~vi~aTn~~~~------------ld~allrpgRf~~~i~~~~p~~~~r~~Il~~ 663 (764)
.+.||+.|+... ...+++||+|||.+.. +.|+++. |||.+|.|++|+.+++..|++.
T Consensus 596 ~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~ 673 (758)
T 3pxi_A 596 FNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSL 673 (758)
T ss_dssp HHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHH
T ss_pred HHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHH
Confidence 788888887532 2357899999997654 6788876 9999999999999999999988
Q ss_pred HhccC-------CCC---CcccHHHHHHH--CCCCCHHHHHHHHHHHHHHHHHHHH
Q 004267 664 CLRKS-------PVS---KDVDLRALAKY--TQGFSGADITEICQRACKYAIRENI 707 (764)
Q Consensus 664 ~~~~~-------~~~---~~~~l~~la~~--~~g~sg~di~~~~~~a~~~a~~~~~ 707 (764)
++... ... ++.-++.|++. ...++.++|+++++.+...++.+.+
T Consensus 674 ~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~i~~~v~~~l~~~~ 729 (758)
T 3pxi_A 674 MSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVEDRLSEEL 729 (758)
T ss_dssp HHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTTTTTHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 87542 121 12235566653 3457789999999998888877664
No 39
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=100.00 E-value=6e-34 Score=300.06 Aligned_cols=245 Identities=44% Similarity=0.802 Sum_probs=214.2
Q ss_pred eccCccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccchh
Q 004267 474 EVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 553 (764)
Q Consensus 474 ~~~~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~~ 553 (764)
..+.++|++++|++++++.+.+.+.+ ...+..+..+++..++|++|+||||||||||++++++.++.+++.+++.++..
T Consensus 33 ~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~ 111 (278)
T 1iy2_A 33 EAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE 111 (278)
T ss_dssp CCCCCCGGGSSSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHH
Confidence 34788999999999999999877654 45667888899999999999999999999999999999999999999999988
Q ss_pred cccCcchHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCCCC
Q 004267 554 MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDII 633 (764)
Q Consensus 554 ~~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~l 633 (764)
.+.+...+.++.+|+.++...|+++|+||+|.+...++...+.......+.+++++.+|++......++++++||+|+.|
T Consensus 112 ~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~l 191 (278)
T 1iy2_A 112 MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDIL 191 (278)
T ss_dssp STTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSS
T ss_pred HHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhC
Confidence 88898889999999999988899999999999887654321112234567889999999998877889999999999999
Q ss_pred CccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 004267 634 DPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIER 713 (764)
Q Consensus 634 d~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~ 713 (764)
|++++|+|||++.++|++|+.++|.+||+.++++.++..++++..+|..++||+|+||+++|++|+..|.++.
T Consensus 192 d~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~------- 264 (278)
T 1iy2_A 192 DPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREG------- 264 (278)
T ss_dssp CHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT-------
T ss_pred CHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC-------
Confidence 9999999999999999999999999999999998888889999999999999999999999999998877542
Q ss_pred HhhhcCCCccccccccccccccccHHHHHHHH
Q 004267 714 ERRRRDNPEAMDEDAAEDEVSEIKAAHFEESM 745 (764)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~ 745 (764)
...|+.+||++|+
T Consensus 265 -------------------~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 265 -------------------RRKITMKDLEEAA 277 (278)
T ss_dssp -------------------CCSBCHHHHHHHT
T ss_pred -------------------CCCcCHHHHHHHh
Confidence 2369999999986
No 40
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=100.00 E-value=1.2e-35 Score=311.32 Aligned_cols=256 Identities=38% Similarity=0.700 Sum_probs=218.7
Q ss_pred eccCccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccchh
Q 004267 474 EVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 553 (764)
Q Consensus 474 ~~~~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~~ 553 (764)
+.+.+.|++++|++.+++.+.+.+.+ +.+++.+..++...++++||+||||||||++|+++|.+++.+|+.++++++.+
T Consensus 4 ~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~ 82 (268)
T 2r62_A 4 EKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIE 82 (268)
T ss_dssp CCCCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTT
T ss_pred cCCCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHH
Confidence 34678899999999999999987765 67788899999999999999999999999999999999999999999999999
Q ss_pred cccCcchHHHHHHHHHHhhCCCeEEEEecccchhhccCCCC-CCCCcchHHHHHHHHHhhcCCCC-CCcEEEEecCCCCC
Q 004267 554 MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSV-GDAGGAADRVLNQLLTEMDGMSA-KKTVFIIGATNRPD 631 (764)
Q Consensus 554 ~~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~-~~~~~~~~~~~~~lL~~ld~~~~-~~~v~vi~aTn~~~ 631 (764)
.|.|.++..++.+|+.+....|+||||||+|.+...+..+. ........+++++||..|++... ..+++||+|||+++
T Consensus 83 ~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~ 162 (268)
T 2r62_A 83 MFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPE 162 (268)
T ss_dssp SCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCT
T ss_pred hhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCch
Confidence 99999999999999999999999999999999987653211 01112234567889999988754 34699999999999
Q ss_pred CCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHhH
Q 004267 632 IIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDI 711 (764)
Q Consensus 632 ~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~ 711 (764)
.+|++++|+|||+..++|++|+.++|.+||+.++++.++..++++..++..+.||+|+||.++|++|++.|.++.
T Consensus 163 ~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~~----- 237 (268)
T 2r62_A 163 ILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNN----- 237 (268)
T ss_dssp TSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSSC-----
T ss_pred hcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc-----
Confidence 999999999999999999999999999999999999888888899999999999999999999999998765421
Q ss_pred HHHhhhcCCCccccccccccccccccHHHHHHHHHhcCCCCCCcc
Q 004267 712 ERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRSICSDA 756 (764)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~s~~~~~ 756 (764)
...|+.+||.+|++.+.|+...+.
T Consensus 238 ---------------------~~~i~~~~~~~a~~~~~~~~~~~~ 261 (268)
T 2r62_A 238 ---------------------QKEVRQQHLKEAVERGIAGLEKKL 261 (268)
T ss_dssp ---------------------CCSCCHHHHHTSCTTCCCCCC---
T ss_pred ---------------------cCCcCHHHHHHHHHHHhhcchhhh
Confidence 236999999999999999984443
No 41
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=5.8e-33 Score=298.75 Aligned_cols=265 Identities=36% Similarity=0.637 Sum_probs=223.6
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhhh
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~ 280 (764)
..++++|++|+|++.+++.|++++.+|+.+|+++.. +..++.++||+||||||||++|+++|++++.+++.++++++.+
T Consensus 11 ~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~ 89 (322)
T 3eie_A 11 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS 89 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHT
T ss_pred cCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhh
Confidence 457889999999999999999999999999999887 5577899999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhccc-CCCeEEEEEecCCCCCCCh
Q 004267 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK-SRAHVIVIGATNRPNSIDP 359 (764)
Q Consensus 281 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-~~~~v~vI~atn~~~~ld~ 359 (764)
.+.|+.+..++.+|+.+....|++|||||+|.+.++++........++..+++..++++. ...+++||++||+++.+|+
T Consensus 90 ~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~ 169 (322)
T 3eie_A 90 KWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDS 169 (322)
T ss_dssp TTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCH
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCH
Confidence 999999999999999999999999999999999988765555556788899999999885 4568999999999999999
Q ss_pred hhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCC-CchhhhHHhhhcCCCchHHHHHHHHHHHHHHHHhhcccccccc
Q 004267 360 ALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLED 438 (764)
Q Consensus 360 al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~ 438 (764)
++++ ||+..++++.|+.++|.+|++.+++..+.. .+.++..++..++||+++|+..+|++|++.++++.........
T Consensus 170 al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~~~~~~~~~ 247 (322)
T 3eie_A 170 AIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKD 247 (322)
T ss_dssp HHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHHHHCEEEEE
T ss_pred HHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 9999 999999999999999999999999887654 6778999999999999999999999999988887543211100
Q ss_pred --------------------------chhhHHHhhhhcccchhhhccccccCCCCc
Q 004267 439 --------------------------ETIDAEILNSMAVSNEHFQTALGTSNPSAL 468 (764)
Q Consensus 439 --------------------------~~~~~~~~~~~~~~~~~~~~al~~~~ps~~ 468 (764)
..+..+......++.+||..|+..++|+..
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~~ 303 (322)
T 3eie_A 248 VSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVN 303 (322)
T ss_dssp CC----CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHHHHHHHHHHSCCSSC
T ss_pred hccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhcCCCCC
Confidence 000011112245888888888888887754
No 42
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=100.00 E-value=1.8e-33 Score=310.80 Aligned_cols=264 Identities=36% Similarity=0.632 Sum_probs=213.8
Q ss_pred eeeeccCccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEeccc
Q 004267 471 TVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPE 550 (764)
Q Consensus 471 ~~~~~~~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~ 550 (764)
.....+.+.|++|+|++.+++.|.+.+.++..+++.+..++ .++.++||+||||||||++|+++|.+++.+|+.+++++
T Consensus 105 ~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~ 183 (389)
T 3vfd_A 105 IVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAAS 183 (389)
T ss_dssp TBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCC
T ss_pred hhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHH
Confidence 34455678999999999999999999999888888887766 45688999999999999999999999999999999999
Q ss_pred chhcccCcchHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCC--CCcEEEEecCC
Q 004267 551 LLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSA--KKTVFIIGATN 628 (764)
Q Consensus 551 l~~~~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~--~~~v~vi~aTn 628 (764)
+.+.|+|+.+..++.+|..++...|+||||||||.++..+... ......+++++||..|++... ..+++||+|||
T Consensus 184 l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn 260 (389)
T 3vfd_A 184 LTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREG---EHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATN 260 (389)
T ss_dssp C-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC-----------CTHHHHHHHHHHHHHHHC-----CEEEEEEES
T ss_pred hhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCc---cchHHHHHHHHHHHHhhcccccCCCCEEEEEecC
Confidence 9999999999999999999999999999999999998876543 234578899999999998754 46799999999
Q ss_pred CCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q 004267 629 RPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRACKYAIRENI 707 (764)
Q Consensus 629 ~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~~g~sg~di~~~~~~a~~~a~~~~~ 707 (764)
+++.||++++| ||+..++|++|+.++|.+||+.++.+.+.. .+.++..++..+.||++++|..+|+.|...++++..
T Consensus 261 ~~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~ 338 (389)
T 3vfd_A 261 RPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELK 338 (389)
T ss_dssp CGGGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSC
T ss_pred CchhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999 999999999999999999999999775443 445788999999999999999999999999988742
Q ss_pred HHhHHHHhhhcCCCccccccccccccccccHHHHHHHHHhcCCCCCCc
Q 004267 708 EKDIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRSICSD 755 (764)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~s~~~~ 755 (764)
+.... .........|+.+||..|++.++|++ +.
T Consensus 339 ~~~~~--------------~~~~~~~~~i~~~d~~~al~~~~~s~-~~ 371 (389)
T 3vfd_A 339 PEQVK--------------NMSASEMRNIRLSDFTESLKKIKRSV-SP 371 (389)
T ss_dssp CC-----------------CCSSSCCCCCCHHHHHHHHHHCCCSS-CH
T ss_pred hhhhh--------------ccchhhcCCcCHHHHHHHHHHcCCCC-CH
Confidence 21110 00112245799999999999999999 44
No 43
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=1.5e-32 Score=299.15 Aligned_cols=264 Identities=36% Similarity=0.625 Sum_probs=218.3
Q ss_pred CCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhhhh
Q 004267 202 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSK 281 (764)
Q Consensus 202 ~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~ 281 (764)
.+.++|++|+|++.+++.|++.+.+|+.+|++|.. +..++.+|||+||||||||+||+++|++++.+++.++++++.+.
T Consensus 45 ~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~ 123 (355)
T 2qp9_X 45 KPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK 123 (355)
T ss_dssp --CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSC
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhh
Confidence 46789999999999999999999999999999987 56788999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccC-CCeEEEEEecCCCCCCChh
Q 004267 282 LAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKS-RAHVIVIGATNRPNSIDPA 360 (764)
Q Consensus 282 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~-~~~v~vI~atn~~~~ld~a 360 (764)
+.|+.+..++.+|..+....|+||||||+|.+.+.++........++..+|+..|+++.. ..+++||++||+++.++++
T Consensus 124 ~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~a 203 (355)
T 2qp9_X 124 WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSA 203 (355)
T ss_dssp C---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHH
T ss_pred hcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHH
Confidence 999999999999999999999999999999999887665566678888999999998754 4689999999999999999
Q ss_pred hhccCCcceEEEecCCChHHHHHHHHHHhcCCCCC-CchhhhHHhhhcCCCchHHHHHHHHHHHHHHHHhhcccccc---
Q 004267 361 LRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDL--- 436 (764)
Q Consensus 361 l~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~--- 436 (764)
++| ||+..+.++.|+.++|.+|++.+++..+.. .+.++..++..++||+|+|+..+|++|++.++++.......
T Consensus 204 l~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~ 281 (355)
T 2qp9_X 204 IRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDV 281 (355)
T ss_dssp HHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHCSEEEEC
T ss_pred HHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 999 999999999999999999999999887653 67789999999999999999999999999988764321100
Q ss_pred -----------------------ccchhhHHHhhhhcccchhhhccccccCCCCc
Q 004267 437 -----------------------EDETIDAEILNSMAVSNEHFQTALGTSNPSAL 468 (764)
Q Consensus 437 -----------------------~~~~~~~~~~~~~~~~~~~~~~al~~~~ps~~ 468 (764)
....+..+......++.+||..|+..++|+..
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~Al~~~~ps~~ 336 (355)
T 2qp9_X 282 STEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVN 336 (355)
T ss_dssp CC-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHHHHHHHSCCSSC
T ss_pred ccccccccccCcCCccccchhhcccccccccccccCCccHHHHHHHHHHcCCCCC
Confidence 00011111122345888999999998888743
No 44
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.98 E-value=5.2e-32 Score=302.27 Aligned_cols=227 Identities=47% Similarity=0.791 Sum_probs=205.4
Q ss_pred CCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhhhh
Q 004267 202 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSK 281 (764)
Q Consensus 202 ~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~ 281 (764)
.+.++|+||+|++++++++++++.. +.+|..|.++++..++++||+||||||||+|++++|++++.+|+.++++++...
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~ 88 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL 88 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHH
Confidence 3567999999999999999999886 788999999999999999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCC---chHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCC
Q 004267 282 LAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT---HGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSID 358 (764)
Q Consensus 282 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld 358 (764)
+.|....+++.+|+.+....|+||||||+|.+.++++.. ......+.+.+|+..|+++....+++||++||+++.+|
T Consensus 89 ~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 89 FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhc
Confidence 999999999999999999999999999999999877532 12233567789999999887777899999999999999
Q ss_pred hhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCCCchhhhHHhhhcCCCchHHHHHHHHHHHHHHHHh
Q 004267 359 PALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIRE 429 (764)
Q Consensus 359 ~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~ 429 (764)
+++.|++||++.+.++.|+.++|.+|++.++++.++..++++..++..++||+|+|+.++|.+|+..+.++
T Consensus 169 ~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~ 239 (476)
T 2ce7_A 169 PALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAARE 239 (476)
T ss_dssp GGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred hhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999998888888999999999999999999999999877654
No 45
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.98 E-value=3e-32 Score=329.40 Aligned_cols=455 Identities=23% Similarity=0.344 Sum_probs=277.8
Q ss_pred CCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCeEEEE
Q 004267 204 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFCI 273 (764)
Q Consensus 204 ~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l----------~~~~i~v 273 (764)
+-.++++.|.++.++++.+++.. ..+.+++|+||||||||++++++|+.+ +..++.+
T Consensus 166 ~~~ld~viGr~~~i~~l~~~l~~-------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 232 (854)
T 1qvr_A 166 EGKLDPVIGRDEEIRRVIQILLR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSL 232 (854)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHHC-------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEE
T ss_pred cCCCcccCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEe
Confidence 44678899999998888777643 235679999999999999999999987 7889999
Q ss_pred echhhh--hhccchhHHHHHHHHHHHHhc-CCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEe
Q 004267 274 NGPEIM--SKLAGESESNLRKAFEEAEKN-APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGA 350 (764)
Q Consensus 274 ~~~~l~--~~~~g~~~~~l~~vf~~a~~~-~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~a 350 (764)
++..+. ..+.|+.+..++.+|..+... .|+||||||+|.+.+....... ..+.+.|...+ .+..+.+|++
T Consensus 233 ~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~---~~~~~~L~~~l----~~~~i~~I~a 305 (854)
T 1qvr_A 233 QMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGA---VDAGNMLKPAL----ARGELRLIGA 305 (854)
T ss_dssp CC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC----------------------HHHH----HTTCCCEEEE
T ss_pred ehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccch---HHHHHHHHHHH----hCCCeEEEEe
Confidence 988876 467788999999999999875 6899999999999866432211 12223333344 3456778888
Q ss_pred cCCCC----CCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCC------CCCCchhhhHHhhhcC-----CCchHHH
Q 004267 351 TNRPN----SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNM------KLSDDVDLERIAKDTH-----GYVGADL 415 (764)
Q Consensus 351 tn~~~----~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~------~l~~~~~l~~la~~t~-----g~~~~dl 415 (764)
|+.++ .+++++.+ ||.. +.++.|+.+++.+|++.+...+ .+ .+..+..++..++ .|.....
T Consensus 306 t~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i-~~~al~~~~~ls~r~i~~~~lp~ka 381 (854)
T 1qvr_A 306 TTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRI-SDSAIIAAATLSHRYITERRLPDKA 381 (854)
T ss_dssp ECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEE-CHHHHHHHHHHHHHHCCSSCTHHHH
T ss_pred cCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCC-CHHHHHHHHHHHhhhcccccChHHH
Confidence 88764 47899998 8976 9999999999999998665432 22 2334555555544 4455566
Q ss_pred HHHHHHHHHHHHHhhcc-------------c-------ccccc-------------c--h-----------hhHHH--hh
Q 004267 416 AALCTEAALQCIREKMD-------------V-------IDLED-------------E--T-----------IDAEI--LN 447 (764)
Q Consensus 416 ~~l~~~a~~~~~~~~~~-------------~-------~~~~~-------------~--~-----------~~~~~--~~ 447 (764)
..++.+++......... . ...+. + . +..+. ..
T Consensus 382 i~lldea~a~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (854)
T 1qvr_A 382 IDLIDEAAARLRMALESAPEEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILR 461 (854)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHSSCSSHHHHSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666655332211000 0 00000 0 0 00000 00
Q ss_pred --------------------------------------------------------hhcccchhhhccccccCCC---Cc
Q 004267 448 --------------------------------------------------------SMAVSNEHFQTALGTSNPS---AL 468 (764)
Q Consensus 448 --------------------------------------------------------~~~~~~~~~~~al~~~~ps---~~ 468 (764)
...+..+++...+...... .+
T Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~v~~~~~ip~~~~ 541 (854)
T 1qvr_A 462 KLREAQHRLDEVRREIELAERQYDLNRAAELRYGELPKLEAEVEALSEKLRGARFVRLEVTEEDIAEIVSRWTGIPVSKL 541 (854)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHTTHHHHHHHHHHHHHHHSSSCSSCCSEECHHHHHHHHHTTSSCHHHHT
T ss_pred HHHHHHHHHHHHhhhHHHHHhcccHHHHHHHhhhhhHHHHHHHHHHHhhhcccccccCCcCHHHHHHHHHHHhCCChHhh
Confidence 0000011111110000000 00
Q ss_pred ----ceeeeeccCccccccccchhhhhcccceeeccCCChhhhhhccC----CCCcceeeeCCCCCChhHHHHHHHHHh-
Q 004267 469 ----RETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGM----SPSKGVLFYGPPGCGKTLLAKAIANEC- 539 (764)
Q Consensus 469 ----~~~~~~~~~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~----~~~~gill~GppGtGKT~lak~lA~~~- 539 (764)
.+.....+...|.++.|++.+++.+...+... ..|+ ++..++||+||||||||++|++++..+
T Consensus 542 ~~~~~~~l~~l~~~l~~~viG~~~a~~~l~~~i~~~--------~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 542 LEGEREKLLRLEEELHKRVVGQDEAIRAVADAIRRA--------RAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp TCCHHHHHHSHHHHHHHHSCSCHHHHHHHHHHHHHH--------GGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHH--------hcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 00000011112455677777777666554321 1121 223469999999999999999999988
Q ss_pred --CCeeEEEecccchhc------------ccCcchHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHH
Q 004267 540 --QANFISVKGPELLTM------------WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVL 605 (764)
Q Consensus 540 --~~~~i~v~~~~l~~~------------~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~ 605 (764)
+.+|+.++++++... |+|..+ .+.+....+..++++||||||+.+ ...+.
T Consensus 614 ~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~--~g~l~~~~~~~~~~vl~lDEi~~l--------------~~~~~ 677 (854)
T 1qvr_A 614 DTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILFDEIEKA--------------HPDVF 677 (854)
T ss_dssp SSGGGEEEECTTTCCSSGGGGGC----------------CHHHHHHHCSSEEEEESSGGGS--------------CHHHH
T ss_pred CCCCcEEEEechhccchhHHHHHcCCCCCCcCccc--cchHHHHHHhCCCeEEEEeccccc--------------CHHHH
Confidence 789999999877543 333322 234445555667799999999875 25678
Q ss_pred HHHHHhhcCCC---------CCCcEEEEecCCCC--------------------------CCCCccCCCCCccceEEeec
Q 004267 606 NQLLTEMDGMS---------AKKTVFIIGATNRP--------------------------DIIDPALLRPGRLDQLIYIP 650 (764)
Q Consensus 606 ~~lL~~ld~~~---------~~~~v~vi~aTn~~--------------------------~~ld~allrpgRf~~~i~~~ 650 (764)
+.||+.|+... +.++++||+|||.. ..+.|+|+. ||+.++.|+
T Consensus 678 ~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i~~~ 755 (854)
T 1qvr_A 678 NILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFR 755 (854)
T ss_dssp HHHHHHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCC
T ss_pred HHHHHHhccCceECCCCCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH--hcCeEEeCC
Confidence 88999888542 23578999999972 245666665 999999999
Q ss_pred CCCHHHHHHHHHHHhccC-------CCC---CcccHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHHHHH
Q 004267 651 LPDEDSRHQIFKACLRKS-------PVS---KDVDLRALAKYTQ--GFSGADITEICQRACKYAIRENIE 708 (764)
Q Consensus 651 ~p~~~~r~~Il~~~~~~~-------~~~---~~~~l~~la~~~~--g~sg~di~~~~~~a~~~a~~~~~~ 708 (764)
+|+.+++..|++.++++. .+. ++.-++.|++... .++.++|+++++.+...++.+.+-
T Consensus 756 pl~~edi~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i~ 825 (854)
T 1qvr_A 756 PLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKIL 825 (854)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999887531 111 2223566777654 678899999999999988887654
No 46
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.97 E-value=7.1e-32 Score=302.24 Aligned_cols=228 Identities=38% Similarity=0.684 Sum_probs=198.8
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHh-CCeEEEEechhhh
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET-GAFFFCINGPEIM 279 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l-~~~~i~v~~~~l~ 279 (764)
..++++|+||+|++.+++.|++.+.+|+.+|++|.. +..+++++||+||||||||+||+++|+++ +.+|+.++++++.
T Consensus 127 ~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~ 205 (444)
T 2zan_A 127 ERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 205 (444)
T ss_dssp CCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHH
Confidence 456789999999999999999999999999999875 35678999999999999999999999999 8899999999999
Q ss_pred hhccchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccC-CCeEEEEEecCCCCCCC
Q 004267 280 SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKS-RAHVIVIGATNRPNSID 358 (764)
Q Consensus 280 ~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~-~~~v~vI~atn~~~~ld 358 (764)
+.+.|+++..++.+|+.+....|+||||||+|.+++.+.........++..+|+..|+++.. ..+++||++||+++.++
T Consensus 206 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld 285 (444)
T 2zan_A 206 SKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLD 285 (444)
T ss_dssp ------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSC
T ss_pred hhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccC
Confidence 99999999999999999999999999999999999887766566667888999999998753 56899999999999999
Q ss_pred hhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCC-CCchhhhHHhhhcCCCchHHHHHHHHHHHHHHHHhhc
Q 004267 359 PALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKM 431 (764)
Q Consensus 359 ~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l-~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~ 431 (764)
++++| ||+..+.++.|+.++|.+|++.++...+. ..+.++..++..+.||+|+|+..+|++|++.++++..
T Consensus 286 ~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~~~ 357 (444)
T 2zan_A 286 SAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRKVQ 357 (444)
T ss_dssp HHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999 99999999999999999999999987765 3677899999999999999999999999998887753
No 47
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.97 E-value=1.2e-30 Score=311.76 Aligned_cols=266 Identities=37% Similarity=0.677 Sum_probs=235.5
Q ss_pred ccCccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccchhc
Q 004267 475 VPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM 554 (764)
Q Consensus 475 ~~~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~~~ 554 (764)
.+.+.|++|+|++.+++.|.+.+.+|+.+++.|..+++.++.++||+||||||||+||+++|++++.+|+.++++++.++
T Consensus 198 ~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~ 277 (806)
T 1ypw_A 198 LNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (806)
T ss_dssp SSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSS
T ss_pred cCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhh
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcchHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCCCCC
Q 004267 555 WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIID 634 (764)
Q Consensus 555 ~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld 634 (764)
|.|+++..++.+|+.+....|+++|+||+|.++..++.. ......+++++|++.|++......+++|+|||+++.+|
T Consensus 278 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld 354 (806)
T 1ypw_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT---HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSID 354 (806)
T ss_dssp STTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCC---CSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSC
T ss_pred hhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccc---cchHHHHHHHHHHHHhhhhcccccEEEecccCCchhcC
Confidence 999999999999999999999999999999999887543 23456789999999999998888999999999999999
Q ss_pred ccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 004267 635 PALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERE 714 (764)
Q Consensus 635 ~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~ 714 (764)
+++.|+|||++.++++.|+.++|.+||+.++++..+..+.++..++..+.||+|+++..+|++|++.++++.........
T Consensus 355 ~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~~~ 434 (806)
T 1ypw_A 355 PALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED 434 (806)
T ss_dssp TTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTTSCHH
T ss_pred HHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhccccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887532110000
Q ss_pred hhhcCCCccccccccccccccccHHHHHHHHHhcCCCC
Q 004267 715 RRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRSI 752 (764)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~s~ 752 (764)
. .. .........++.+||..++....|+.
T Consensus 435 ~-------~~--~~~~~~~~~v~~~d~~~al~~~~~s~ 463 (806)
T 1ypw_A 435 E-------TI--DAEVMNSLAVTMDDFRWALSQSNPSA 463 (806)
T ss_dssp H-------HC--CHHHHTTCCCCTTHHHHHHHHSCCCC
T ss_pred h-------cc--chhhhhhhhhhhhhhhccccccCchh
Confidence 0 00 00011234689999999999999875
No 48
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.97 E-value=7e-30 Score=269.84 Aligned_cols=230 Identities=56% Similarity=0.934 Sum_probs=209.0
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhhh
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~ 280 (764)
..++++|++++|+++++++|++++..++.++++++.+++.++.++||+||||||||++|+++|+.++.+++.+++.++..
T Consensus 10 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~ 89 (285)
T 3h4m_A 10 ERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVK 89 (285)
T ss_dssp SSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCc---hHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCC
Q 004267 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTH---GEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 357 (764)
Q Consensus 281 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~---~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~l 357 (764)
.+.|.....++.+|..+....|++|||||+|.+++++.... .....+.+..++..++++....+++||++||.++.+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l 169 (285)
T 3h4m_A 90 KFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDIL 169 (285)
T ss_dssp CSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGB
T ss_pred hccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhc
Confidence 99999999999999999999999999999999988765432 222344556677777777777789999999999999
Q ss_pred ChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCCCchhhhHHhhhcCCCchHHHHHHHHHHHHHHHHhh
Q 004267 358 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREK 430 (764)
Q Consensus 358 d~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~ 430 (764)
++++.+++||+..+.++.|+.++|.+|++.+++...+..+.++..++..+.||+++++..+|.+|...++.+.
T Consensus 170 ~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~ 242 (285)
T 3h4m_A 170 DPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIREL 242 (285)
T ss_dssp CHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999998888888889999999999999999999999998887664
No 49
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.97 E-value=9.5e-30 Score=264.75 Aligned_cols=228 Identities=43% Similarity=0.744 Sum_probs=201.0
Q ss_pred CCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhhhh
Q 004267 202 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSK 281 (764)
Q Consensus 202 ~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~ 281 (764)
.+..+|++++|+++.++++++++.. +.+++.+..++...+.+++|+|||||||||+++++++.++.+++.+++.++...
T Consensus 6 ~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~ 84 (257)
T 1lv7_A 6 QIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM 84 (257)
T ss_dssp SSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTS
T ss_pred CCCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHH
Confidence 4567899999999999999998876 788889999999999999999999999999999999999999999999999988
Q ss_pred ccchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCC---chHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCC
Q 004267 282 LAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT---HGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSID 358 (764)
Q Consensus 282 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld 358 (764)
+.+.....++.+|+.+....|+++|+||+|.+...+... ......+.+.+++..++++....+++||++||+++.++
T Consensus 85 ~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~ 164 (257)
T 1lv7_A 85 FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 164 (257)
T ss_dssp CCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSC
T ss_pred hhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCC
Confidence 889999999999999999899999999999998876532 12223467788999999887778899999999999999
Q ss_pred hhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCCCchhhhHHhhhcCCCchHHHHHHHHHHHHHHHHhh
Q 004267 359 PALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREK 430 (764)
Q Consensus 359 ~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~ 430 (764)
+++.|++||++.+.++.|+.++|.+|++.++++.++..+.++..++..++||+++++..+|.+|+..+.++.
T Consensus 165 ~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~ 236 (257)
T 1lv7_A 165 PALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGN 236 (257)
T ss_dssp GGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999998888888889999999999999999999999998877543
No 50
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.97 E-value=1.7e-30 Score=291.63 Aligned_cols=246 Identities=41% Similarity=0.695 Sum_probs=215.3
Q ss_pred CCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhhhhc
Q 004267 203 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKL 282 (764)
Q Consensus 203 ~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~ 282 (764)
+.++|+|++|+++++..+++++.. +.+|..+.++++..+++++|+||||||||+|+++||++++.+++.+++.++...+
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~ 104 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 104 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSC
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhh
Confidence 578999999999999999999876 7788999999999999999999999999999999999999999999999999888
Q ss_pred cchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCC---chHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCCh
Q 004267 283 AGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT---HGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDP 359 (764)
Q Consensus 283 ~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld~ 359 (764)
.+.....++.+|+.+....|+++||||+|.+...++.. ......+.+.+++..|++...+..++++++||+|+.+|+
T Consensus 105 ~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~ 184 (499)
T 2dhr_A 105 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDP 184 (499)
T ss_dssp TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCT
T ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCc
Confidence 89888999999999988889999999999998776531 123334667889999998887778999999999999999
Q ss_pred hhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCCCchhhhHHhhhcCCCchHHHHHHHHHHHHHHHHhhccccccccc
Q 004267 360 ALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDE 439 (764)
Q Consensus 360 al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~ 439 (764)
++.|++||++.+.++.|+.++|.+||+.++++.++..++++..++..++||+|+||.++|.+|+..+.++..
T Consensus 185 aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~~~-------- 256 (499)
T 2dhr_A 185 ALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGR-------- 256 (499)
T ss_dssp TTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTTCC--------
T ss_pred ccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC--------
Confidence 999999999999999999999999999999988888889999999999999999999999999987765421
Q ss_pred hhhHHHhhhhcccchhhhccccccCCC
Q 004267 440 TIDAEILNSMAVSNEHFQTALGTSNPS 466 (764)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~al~~~~ps 466 (764)
..++.+++..++..+.+.
T Consensus 257 ---------~~It~~dl~~al~~v~~~ 274 (499)
T 2dhr_A 257 ---------RKITMKDLEEAADRVMML 274 (499)
T ss_dssp ---------SSCCSHHHHHHHHHHTTC
T ss_pred ---------CccCHHHHHHHHHHHhcc
Confidence 235566666666655443
No 51
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.96 E-value=1.5e-28 Score=255.19 Aligned_cols=228 Identities=44% Similarity=0.755 Sum_probs=200.3
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhhh
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~ 280 (764)
..+.++|++++|+++.+.+++++... +.++..+.++++..+++++|+||||||||||++++++.++..++.+++.++..
T Consensus 9 ~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~ 87 (254)
T 1ixz_A 9 EAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE 87 (254)
T ss_dssp CCCSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHH
Confidence 34678999999999999999988775 67788999999999999999999999999999999999999999999999988
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCC---chHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCC
Q 004267 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT---HGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 357 (764)
Q Consensus 281 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~l 357 (764)
.+.+.....++.+|+.+....|+++|+||+|.+...+... ......+.+.+++..+++......++++++||+|+.+
T Consensus 88 ~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~l 167 (254)
T 1ixz_A 88 MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDIL 167 (254)
T ss_dssp SCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGS
T ss_pred HHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhC
Confidence 8888888889999999988889999999999987665421 1223356678888889888777788999999999999
Q ss_pred ChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCCCchhhhHHhhhcCCCchHHHHHHHHHHHHHHHHh
Q 004267 358 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIRE 429 (764)
Q Consensus 358 d~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~ 429 (764)
|+++.|++||++.++++.|+.++|.+|++.+.+..++..+.++..++..++||+++|+..+|.+|+..+.++
T Consensus 168 d~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~ 239 (254)
T 1ixz_A 168 DPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE 239 (254)
T ss_dssp CGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999998888888888999999999999999999999998877654
No 52
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.96 E-value=2.2e-28 Score=254.81 Aligned_cols=225 Identities=42% Similarity=0.708 Sum_probs=181.7
Q ss_pred CCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhhhhcc
Q 004267 204 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLA 283 (764)
Q Consensus 204 ~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~~ 283 (764)
+++|++++|+++.++.+++++.. +.+|+.|..+|+..+.++||+||||||||++|+++|++++.+++.+++.++...+.
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~ 80 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIG 80 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSST
T ss_pred CCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhcc
Confidence 57899999999999999999887 78889999999999999999999999999999999999999999999999988888
Q ss_pred chhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCc----hHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCCh
Q 004267 284 GESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTH----GEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDP 359 (764)
Q Consensus 284 g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~----~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld~ 359 (764)
+.....++.+|+.+....|++|||||+|.+..++.... .......+.+++..+++.....++++|++||.++.+|+
T Consensus 81 ~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~ 160 (262)
T 2qz4_A 81 GLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDG 160 (262)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGS
T ss_pred ChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCH
Confidence 88889999999999999999999999999987664321 11223456777888887766778999999999999999
Q ss_pred hhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCCCch--hhhHHhhhcCCCchHHHHHHHHHHHHHHHHh
Q 004267 360 ALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDV--DLERIAKDTHGYVGADLAALCTEAALQCIRE 429 (764)
Q Consensus 360 al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~~~--~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~ 429 (764)
++.+++||+..++++.|+.++|.+|++.+++...+..+. .+..++..+.||+++++..+|++|+..+.++
T Consensus 161 ~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~ 232 (262)
T 2qz4_A 161 ALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAARE 232 (262)
T ss_dssp GGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC----
T ss_pred HHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999988777665443 3478999999999999999999998776644
No 53
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.96 E-value=1.5e-28 Score=261.23 Aligned_cols=261 Identities=37% Similarity=0.571 Sum_probs=213.8
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhhh
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~ 280 (764)
..++++|++++|++.+++.+++.+..|+.+|+++..++ .++.++||+||||||||++|+++++.++.+++.++++++.+
T Consensus 14 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~ 92 (297)
T 3b9p_A 14 GGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTS 92 (297)
T ss_dssp CSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSS
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhh
Confidence 34678999999999999999999999999999988765 56789999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCC---CeEEEEEecCCCCCC
Q 004267 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSR---AHVIVIGATNRPNSI 357 (764)
Q Consensus 281 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~---~~v~vI~atn~~~~l 357 (764)
.+.++.+..++.+|..+....|++|||||+|.++..+.....+...++..+|+..+++.... ..++||++||+++.+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l 172 (297)
T 3b9p_A 93 KYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQEL 172 (297)
T ss_dssp SSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGB
T ss_pred cccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhC
Confidence 99999999999999999999999999999999998765433334456777888888877543 579999999999999
Q ss_pred ChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCC-CCchhhhHHhhhcCCCchHHHHHHHHHHHHHHHHhhcccccc
Q 004267 358 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDL 436 (764)
Q Consensus 358 d~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l-~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~ 436 (764)
++++.+ ||+..+.++.|+.++|..|++.+++.... ..+..+..++..+.||+++++..+|++|+..++++.......
T Consensus 173 ~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~~~~ 250 (297)
T 3b9p_A 173 DEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVK 250 (297)
T ss_dssp CHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC-----
T ss_pred CHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 999998 99999999999999999999988876543 245678999999999999999999999998887764221100
Q ss_pred ccchhhHHHhhhhcccchhhhccccccCCCCcc
Q 004267 437 EDETIDAEILNSMAVSNEHFQTALGTSNPSALR 469 (764)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~al~~~~ps~~~ 469 (764)
. ........++.+||..++....|+...
T Consensus 251 ~-----~~~~~~~~i~~~d~~~a~~~~~~s~~~ 278 (297)
T 3b9p_A 251 C-----LDISAMRAITEQDFHSSLKRIRRSVAP 278 (297)
T ss_dssp --------CCCCCCCCHHHHHHHTTSCCCSSCH
T ss_pred c-----ccccccCCcCHHHHHHHHHHcCCCCCH
Confidence 0 000112357889999999988887543
No 54
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.96 E-value=6.1e-28 Score=263.09 Aligned_cols=260 Identities=36% Similarity=0.615 Sum_probs=213.8
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhhh
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~ 280 (764)
..++++|++|+|++.+++.|++.+.+|+.+|++|..++ .++.++||+||||||||++|+++|+.++.+++.++++++.+
T Consensus 77 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~ 155 (357)
T 3d8b_A 77 HGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS 155 (357)
T ss_dssp CSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhc
Confidence 45678999999999999999999999999999887764 67889999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccC--CCeEEEEEecCCCCCCC
Q 004267 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKS--RAHVIVIGATNRPNSID 358 (764)
Q Consensus 281 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~--~~~v~vI~atn~~~~ld 358 (764)
.+.|+.+..++.+|..+....|++|||||+|.+.+.+.........++..+++..+++... ..+++||++||.++.++
T Consensus 156 ~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~ 235 (357)
T 3d8b_A 156 KWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEID 235 (357)
T ss_dssp SSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBC
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCC
Confidence 9999999999999999999999999999999999877654455567788889998887653 45899999999999999
Q ss_pred hhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCC-CchhhhHHhhhcCCCchHHHHHHHHHHHHHHHHhhccccccc
Q 004267 359 PALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE 437 (764)
Q Consensus 359 ~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 437 (764)
+++++ ||+..+.++.|+.++|.++++.+++..... .+.++..++..+.||+++++..+|.+|...++++......
T Consensus 236 ~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~~-- 311 (357)
T 3d8b_A 236 EAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADI-- 311 (357)
T ss_dssp HHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC-----
T ss_pred HHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhhh--
Confidence 99999 999999999999999999999888765432 4567899999999999999999999999888775421110
Q ss_pred cchhhHHHhhhhcccchhhhccccccCCCCc
Q 004267 438 DETIDAEILNSMAVSNEHFQTALGTSNPSAL 468 (764)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~al~~~~ps~~ 468 (764)
... .......++.+||..++..+.|+..
T Consensus 312 -~~~--~~~~~~~i~~~d~~~al~~~~ps~~ 339 (357)
T 3d8b_A 312 -ATI--TPDQVRPIAYIDFENAFRTVRPSVS 339 (357)
T ss_dssp ----------CCCBCHHHHHHHHHHHGGGCC
T ss_pred -ccc--cccccCCcCHHHHHHHHHhcCCCCC
Confidence 000 0012345788899999888877643
No 55
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.96 E-value=2.9e-27 Score=248.95 Aligned_cols=226 Identities=44% Similarity=0.762 Sum_probs=198.3
Q ss_pred CCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhhhhc
Q 004267 203 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKL 282 (764)
Q Consensus 203 ~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~ 282 (764)
++++|++++|+++.+++++++... +.++..+.++++..+++++|+||||||||||+++|++.++..++.+++.++...+
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~ 113 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 113 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHST
T ss_pred CCCCHHHhCChHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHH
Confidence 678999999999999999988765 6778889999999999999999999999999999999999999999999988888
Q ss_pred cchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCC---chHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCCh
Q 004267 283 AGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT---HGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDP 359 (764)
Q Consensus 283 ~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld~ 359 (764)
.+.....++.+|+.+....|+++|+||+|.+...+... ......+.+.+++..+++......++++++||+|+.+|+
T Consensus 114 ~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~ 193 (278)
T 1iy2_A 114 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDP 193 (278)
T ss_dssp TTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCH
T ss_pred hhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCH
Confidence 88888889999999988889999999999887655321 112234566778888888777677899999999999999
Q ss_pred hhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCCCchhhhHHhhhcCCCchHHHHHHHHHHHHHHHHh
Q 004267 360 ALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIRE 429 (764)
Q Consensus 360 al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~ 429 (764)
++.|++||++.++++.|+.++|.+||+.+.+..++..+.++..++..++||+++|+..+|.+|+..+.++
T Consensus 194 ~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~ 263 (278)
T 1iy2_A 194 ALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE 263 (278)
T ss_dssp HHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred hHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999998888888888999999999999999999999998877654
No 56
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.95 E-value=1e-28 Score=278.07 Aligned_cols=360 Identities=19% Similarity=0.241 Sum_probs=237.4
Q ss_pred CCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhC--CeEEEEechhhhhh
Q 004267 204 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG--AFFFCINGPEIMSK 281 (764)
Q Consensus 204 ~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~--~~~i~v~~~~l~~~ 281 (764)
...|++++|+++.++.+.+++..- ..+..++.++||+||||||||++|+++|++++ .+|+.++++++.++
T Consensus 33 ~~~~~~iiG~~~~~~~l~~~~~~~--------~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~ 104 (456)
T 2c9o_A 33 KQAASGLVGQENAREACGVIVELI--------KSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYST 104 (456)
T ss_dssp CSEETTEESCHHHHHHHHHHHHHH--------HTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCS
T ss_pred hhchhhccCHHHHHHHHHHHHHHH--------HhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHH
Confidence 446899999999999988877541 12556788999999999999999999999999 89999999999999
Q ss_pred ccchhHHHHHHHHHHH---HhcCCeEEEEccccccCCCCCCCchH----HHHH---------------HHHHHHHHhh--
Q 004267 282 LAGESESNLRKAFEEA---EKNAPSIIFIDEIDSIAPKREKTHGE----VERR---------------IVSQLLTLMD-- 337 (764)
Q Consensus 282 ~~g~~~~~l~~vf~~a---~~~~p~il~iDEid~l~~~~~~~~~~----~~~~---------------v~~~Ll~~ld-- 337 (764)
+.|+++. ++.+|+.+ ....|++|||||+|.+++++...... ...+ +..+++..++
T Consensus 105 ~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~ 183 (456)
T 2c9o_A 105 EIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQKE 183 (456)
T ss_dssp SSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHHT
T ss_pred hhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhhc
Confidence 9999887 99999999 77889999999999999887643211 1111 1123444443
Q ss_pred cccCCCeEEEEEecCCCCCCChhhhccCCcce--EEEecCCC--hHHHHHHHHHHhcCCCCCCchhhhHHhhhcCCCchH
Q 004267 338 GLKSRAHVIVIGATNRPNSIDPALRRFGRFDR--EIDIGVPD--EVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGA 413 (764)
Q Consensus 338 ~~~~~~~v~vI~atn~~~~ld~al~r~~rf~~--~i~i~~p~--~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~ 413 (764)
+......++|+++||+++.+|+++.|++||++ .+.++.|+ .+.|.+|++.++. .+++.++..++| |+
T Consensus 184 ~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~-------~dl~~~a~~t~g--ga 254 (456)
T 2c9o_A 184 RVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL-------HDLDVANARPQG--GQ 254 (456)
T ss_dssp TCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH-------HHHHHTC---------
T ss_pred cCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH-------HHHHHHHHhCCC--hh
Confidence 23334456666999999999999999999998 55666664 4678777764432 378899999999 99
Q ss_pred HHHHHHHHHHHHHHHhhccccccccchhhHHHhhhhcccchhhhccccccCCCCcceeeeeccCccccccccchhhhhcc
Q 004267 414 DLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVSNEHFQTALGTSNPSALRETVVEVPNVSWEDIGGLENVKREL 493 (764)
Q Consensus 414 dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~ps~~~~~~~~~~~v~~~~i~g~~~~k~~l 493 (764)
|+.++|....... . ... ...+
T Consensus 255 dl~~l~~~i~~p~--~------------------------~~I---------------------------------~~~l 275 (456)
T 2c9o_A 255 DILSMMGQLMKPK--K------------------------TEI---------------------------------TDKL 275 (456)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhhhcccc--h------------------------hhH---------------------------------HHHH
Confidence 9988875311000 0 000 0000
Q ss_pred cceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccchhcccCcchHHHHHHHHHHhh-
Q 004267 494 QETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQ- 572 (764)
Q Consensus 494 ~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~- 572 (764)
.+ .+. +.+...++.+..
T Consensus 276 r~----------------------------------~I~----------------------------~~l~~~~~~g~~~ 293 (456)
T 2c9o_A 276 RG----------------------------------EIN----------------------------KVVNKYIDQGIAE 293 (456)
T ss_dssp -C----------------------------------HHH----------------------------HHHHHHHHTTSEE
T ss_pred HH----------------------------------HHH----------------------------HHHHHHHHhcccc
Confidence 00 000 001111111111
Q ss_pred CCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEec---------CC---CCCCCCccCCCC
Q 004267 573 SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGA---------TN---RPDIIDPALLRP 640 (764)
Q Consensus 573 ~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~a---------Tn---~~~~ld~allrp 640 (764)
..|.|+|+||++.+. ....+.||..|+.... .++|++| |+ .|+.|+|.+++
T Consensus 294 v~~~VliIDEa~~l~--------------~~a~~aLlk~lEe~~~--~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~s- 356 (456)
T 2c9o_A 294 LVPGVLFVDEVHMLD--------------IECFTYLHRALESSIA--PIVIFASNRGNCVIRGTEDITSPHGIPLDLLD- 356 (456)
T ss_dssp EEECEEEEESGGGCB--------------HHHHHHHHHHTTSTTC--CEEEEEECCSEEECBTTSSCEEETTCCHHHHT-
T ss_pred ccceEEEEechhhcC--------------HHHHHHHHHHhhccCC--CEEEEecCCccccccccccccccccCChhHHh-
Confidence 113599999999973 4578889999886543 3655565 33 27788888988
Q ss_pred CccceEEeecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhc
Q 004267 641 GRLDQLIYIPLPDEDSRHQIFKACLRKSPVS-KDVDLRALAKYT-QGFSGADITEICQRACKYAIRENIEKDIERERRRR 718 (764)
Q Consensus 641 gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~-~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~ 718 (764)
||.. +.|++|+.++..+|++..+....+. ++..+..++..+ .| +.+...++++.|...|..+.
T Consensus 357 -R~~~-~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g-~~r~a~~ll~~a~~~A~~~~------------ 421 (456)
T 2c9o_A 357 -RVMI-IRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKT-TLRYSVQLLTPANLLAKING------------ 421 (456)
T ss_dssp -TEEE-EECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHS-CHHHHHHTHHHHHHHHHHTT------------
T ss_pred -hcce-eeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhhcC------------
Confidence 9986 6999999999999999887544332 223356677766 44 88888888888877776543
Q ss_pred CCCccccccccccccccccHHHHHHHHHhc
Q 004267 719 DNPEAMDEDAAEDEVSEIKAAHFEESMKFA 748 (764)
Q Consensus 719 ~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~ 748 (764)
...|+.+|+.+|+.-+
T Consensus 422 --------------~~~v~~~~v~~~~~~~ 437 (456)
T 2c9o_A 422 --------------KDSIEKEHVEEISELF 437 (456)
T ss_dssp --------------CSSBCHHHHHHHHHHS
T ss_pred --------------CCccCHHHHHHHHHHh
Confidence 2369999999998765
No 57
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.95 E-value=5.9e-28 Score=255.80 Aligned_cols=176 Identities=22% Similarity=0.328 Sum_probs=141.4
Q ss_pred cCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccchhcccCcchHHHHHHHHHH----hhCCCeEEEEecccch
Q 004267 511 GMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKA----RQSAPCVLFFDELDSI 586 (764)
Q Consensus 511 ~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~~~~~g~se~~i~~~f~~a----~~~~p~iifiDEid~l 586 (764)
+.+++.++|||||||||||++|+++|++++.+|+.++++++.++|+|+++..++.+|+.| +...||||||||||.+
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~ 111 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAG 111 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC--
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhh
Confidence 567788999999999999999999999999999999999999999999999999999999 5778999999999999
Q ss_pred hhccCCCCCCCCcchHHHHHHHHHhhcCCC-----------CCCcEEEEecCCCCCCCCccCCCCCccceEEeecCCCHH
Q 004267 587 ATQRGSSVGDAGGAADRVLNQLLTEMDGMS-----------AKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDED 655 (764)
Q Consensus 587 ~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~-----------~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~ 655 (764)
.+.++... .......++.+.|++.||+.. ...+++||+|||+++.||++++||||||..+++ |+.+
T Consensus 112 ~~~~~~~~-~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~~--P~~~ 188 (293)
T 3t15_A 112 AGRMGGTT-QYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTRE 188 (293)
T ss_dssp -------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEEC--CCHH
T ss_pred cCCCCCCc-cccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEeC--cCHH
Confidence 88654321 222345678899999998543 456899999999999999999999999999974 6999
Q ss_pred HHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHH
Q 004267 656 SRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITE 693 (764)
Q Consensus 656 ~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~sg~di~~ 693 (764)
+|.+|++.++... ++++..+++.+++|+|++|..
T Consensus 189 ~r~~Il~~~~~~~----~~~~~~l~~~~~~~~~~~l~~ 222 (293)
T 3t15_A 189 DRIGVCTGIFRTD----NVPAEDVVKIVDNFPGQSIDF 222 (293)
T ss_dssp HHHHHHHHHHGGG----CCCHHHHHHHHHHSCSCCHHH
T ss_pred HHHHHHHHhccCC----CCCHHHHHHHhCCCCcccHHH
Confidence 9999999888643 567889999999999999864
No 58
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.95 E-value=8e-29 Score=259.32 Aligned_cols=249 Identities=43% Similarity=0.693 Sum_probs=206.3
Q ss_pred CCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhhhh
Q 004267 202 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSK 281 (764)
Q Consensus 202 ~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~ 281 (764)
.++++|++++|++++++.+++++.. +.+|+.|.+++...+.++||+||||||||++|+++|++++.+++.+++.++...
T Consensus 5 ~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~ 83 (268)
T 2r62_A 5 KPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM 83 (268)
T ss_dssp CCCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTS
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHh
Confidence 4567899999999999999998886 889999999999999999999999999999999999999999999999998888
Q ss_pred ccchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCc----hHHHHHHHHHHHHHhhcccC-CCeEEEEEecCCCCC
Q 004267 282 LAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTH----GEVERRIVSQLLTLMDGLKS-RAHVIVIGATNRPNS 356 (764)
Q Consensus 282 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~----~~~~~~v~~~Ll~~ld~~~~-~~~v~vI~atn~~~~ 356 (764)
+.|.....++.+|+.+....|++|||||+|.+...+.... .....+...+|+..+++... ...++||++||.++.
T Consensus 84 ~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ 163 (268)
T 2r62_A 84 FVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEI 163 (268)
T ss_dssp CSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTT
T ss_pred hcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchh
Confidence 8887777788899999998999999999999987652211 00111234556666766543 345899999999999
Q ss_pred CChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCCCchhhhHHhhhcCCCchHHHHHHHHHHHHHHHHhhcccccc
Q 004267 357 IDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDL 436 (764)
Q Consensus 357 ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~ 436 (764)
+++++.+++||+..+.++.|+.++|.++++.+++.+.+..+.++..++..+.||+++++..+|.+|+..+..+.
T Consensus 164 ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~~------ 237 (268)
T 2r62_A 164 LDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNN------ 237 (268)
T ss_dssp SCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSSC------
T ss_pred cCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc------
Confidence 99999999999999999999999999999999998888778889999999999999999999999987654321
Q ss_pred ccchhhHHHhhhhcccchhhhccccccCCCCc
Q 004267 437 EDETIDAEILNSMAVSNEHFQTALGTSNPSAL 468 (764)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~al~~~~ps~~ 468 (764)
...++.+++..++....|+..
T Consensus 238 -----------~~~i~~~~~~~a~~~~~~~~~ 258 (268)
T 2r62_A 238 -----------QKEVRQQHLKEAVERGIAGLE 258 (268)
T ss_dssp -----------CCSCCHHHHHTSCTTCCCCCC
T ss_pred -----------cCCcCHHHHHHHHHHHhhcch
Confidence 123666777777777766544
No 59
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.95 E-value=1.2e-26 Score=256.13 Aligned_cols=258 Identities=36% Similarity=0.566 Sum_probs=202.4
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhhh
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~ 280 (764)
..++++|++|+|++.+++.|.+++.+|+.++++|..++ .++.++||+||||||||++|+++|.+++.+|+.+++.++.+
T Consensus 108 ~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~ 186 (389)
T 3vfd_A 108 NGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTS 186 (389)
T ss_dssp CSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC--
T ss_pred cCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhc
Confidence 45678899999999999999999999999999988776 45789999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccC--CCeEEEEEecCCCCCCC
Q 004267 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKS--RAHVIVIGATNRPNSID 358 (764)
Q Consensus 281 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~--~~~v~vI~atn~~~~ld 358 (764)
.+.|+.+..++.+|..+....|++|||||+|.++..+.........++...|+..+++... ...++||++||+++.++
T Consensus 187 ~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~ 266 (389)
T 3vfd_A 187 KYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELD 266 (389)
T ss_dssp -----CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCC
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcC
Confidence 9999999999999999999999999999999998877655455567788889999987765 45799999999999999
Q ss_pred hhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCC-CCchhhhHHhhhcCCCchHHHHHHHHHHHHHHHHhhccccccc
Q 004267 359 PALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE 437 (764)
Q Consensus 359 ~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l-~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 437 (764)
+++++ ||...+.++.|+.++|.+|++.++..... ..+..+..++..+.||+++++..+|..|...++++........
T Consensus 267 ~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~~~~~~ 344 (389)
T 3vfd_A 267 EAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVKN 344 (389)
T ss_dssp HHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCCC---C
T ss_pred HHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhhhhhc
Confidence 99999 99999999999999999999988876443 2445789999999999999999999999888877643211100
Q ss_pred cchhhHHHhhhhcccchhhhccccccCCC
Q 004267 438 DETIDAEILNSMAVSNEHFQTALGTSNPS 466 (764)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~al~~~~ps 466 (764)
. .......++.+||..++....|+
T Consensus 345 ~-----~~~~~~~i~~~d~~~al~~~~~s 368 (389)
T 3vfd_A 345 M-----SASEMRNIRLSDFTESLKKIKRS 368 (389)
T ss_dssp C-----SSSCCCCCCHHHHHHHHHHCCCS
T ss_pred c-----chhhcCCcCHHHHHHHHHHcCCC
Confidence 0 00012346667777777766554
No 60
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.92 E-value=5.5e-25 Score=241.96 Aligned_cols=170 Identities=24% Similarity=0.298 Sum_probs=85.9
Q ss_pred ccccChHHHHHHHHHHHHccccChhhhhhhCCC-CCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhhh-hccch
Q 004267 208 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVK-PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS-KLAGE 285 (764)
Q Consensus 208 ~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~-~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~-~~~g~ 285 (764)
++|+|+++.++.+..++..+++++.++..+... ++.++||+||||||||++++++|+.++.+|+.++++.+.+ .|.|.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 369999999999999998887777776665443 5688999999999999999999999999999999999887 58884
Q ss_pred -hHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEe-cCCCCCCChhhhc
Q 004267 286 -SESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGA-TNRPNSIDPALRR 363 (764)
Q Consensus 286 -~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~a-tn~~~~ld~al~r 363 (764)
.+..++.+|+.+... +++||++.+.. ...+..+++++.+|+..||++.....+ +++ ||+++.+|++|+|
T Consensus 95 d~e~~lr~lf~~a~~~----~~~De~d~~~~---~~~~~~e~rvl~~LL~~~dg~~~~~~v--~a~~TN~~~~ld~aL~r 165 (444)
T 1g41_A 95 EVDSIIRDLTDSAMKL----VRQQEIAKNRA---RAEDVAEERILDALLPPAKNQWGEVEN--HDSHSSTRQAFRKKLRE 165 (444)
T ss_dssp CTHHHHHHHHHHHHHH----HHHHHHHSCC--------------------------------------------------
T ss_pred cHHHHHHHHHHHHHhc----chhhhhhhhhc---cchhhHHHHHHHHHHHHhhcccccccc--ccccccCHHHHHHHHHc
Confidence 789999999998775 35888877643 344567789999999999999776554 444 9999999999999
Q ss_pred cCCcceEEEecCCChH-HHHHHHH
Q 004267 364 FGRFDREIDIGVPDEV-GRLEVLR 386 (764)
Q Consensus 364 ~~rf~~~i~i~~p~~~-~R~~il~ 386 (764)
++|||++|+++.|+.. .|.+|+.
T Consensus 166 ggr~D~~i~i~lP~~~~~~~ei~~ 189 (444)
T 1g41_A 166 GQLDDKEIEIDVSAGVSMGVEIMA 189 (444)
T ss_dssp ------------------------
T ss_pred CCCcceEEEEcCCCCccchhhhhc
Confidence 9999999999999987 6777765
No 61
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.92 E-value=1.2e-26 Score=288.36 Aligned_cols=203 Identities=18% Similarity=0.266 Sum_probs=134.2
Q ss_pred CCchHHHHHHHHHHHHHHHHhhccccccccchhhHHHhhhhcccchhhhccccccCCCCcceeeeeccCccccccccchh
Q 004267 409 GYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVSNEHFQTALGTSNPSALRETVVEVPNVSWEDIGGLEN 488 (764)
Q Consensus 409 g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~ps~~~~~~~~~~~v~~~~i~g~~~ 488 (764)
+|.+.++.+ +++++++.+++.... .+.+.......+ |..+ ....|+..+ .+.+.|++++|+++
T Consensus 965 ~~~g~~l~~-~~e~a~~~L~~~~~~----~~ei~~~i~~~~------~~~~-~~~~~~~~~-----~~~~~~~~~~~~~~ 1027 (1706)
T 3cmw_A 965 SYKGEKIGQ-GKANATAWLKDNPET----AKEIEKKVRELL------LSNP-NSTTGSTGS-----ASGSSTGSMSAIDE 1027 (1706)
T ss_dssp EETTEEEEE-SHHHHHHHHHHCHHH----HHHHHHHHHHHH------CSSC-CC----------------------CTTH
T ss_pred eecccchhh-hHHHHHHHHHhCchH----HHHHHHHHHHHH------hhhc-cCCCccccc-----cCCceeeecCCccH
Confidence 355655543 677777777664211 112222222222 3333 334444443 34589999999999
Q ss_pred hhhcccceeeccCCC----------hhhhhh------ccCC----------CCcc--eeeeCCCCCChhHHHHHHHHHhC
Q 004267 489 VKRELQETVQYPVEH----------PEKFEK------FGMS----------PSKG--VLFYGPPGCGKTLLAKAIANECQ 540 (764)
Q Consensus 489 ~k~~l~~~v~~~~~~----------~~~~~~------~~~~----------~~~g--ill~GppGtGKT~lak~lA~~~~ 540 (764)
+|+.+.+.+.||+++ ++.++. .|.. +|+| +++|||||||||+||++++.+..
T Consensus 1028 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~GKT~la~~~~~~~~ 1107 (1706)
T 3cmw_A 1028 NKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 1107 (1706)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCChHHHHHHHHHHhh
Confidence 999999999998844 556655 3333 4556 99999999999999999999874
Q ss_pred C---e--eEEEec--ccch--------hcccCc----chHHHHHHHHHHhhCCCeEEEEecccchhhcc---CCCCCCCC
Q 004267 541 A---N--FISVKG--PELL--------TMWFGE----SEANVREIFDKARQSAPCVLFFDELDSIATQR---GSSVGDAG 598 (764)
Q Consensus 541 ~---~--~i~v~~--~~l~--------~~~~g~----se~~i~~~f~~a~~~~p~iifiDEid~l~~~r---~~~~~~~~ 598 (764)
. + ||.+.. ++++ ++|+++ +|+.++.+|..|++.+||++|+||+++|++.+ |...+...
T Consensus 1108 ~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~~~~~~~g~~~~~~~ 1187 (1706)
T 3cmw_A 1108 REGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHM 1187 (1706)
T ss_dssp HTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCT
T ss_pred hcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcCcccccccccccccc
Confidence 4 3 555544 3344 788888 89999999999999999999999999999984 33222223
Q ss_pred cchHHHHHHHHHhhcCCCCCCcEEEEecCCC
Q 004267 599 GAADRVLNQLLTEMDGMSAKKTVFIIGATNR 629 (764)
Q Consensus 599 ~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~ 629 (764)
+...|+++++|++|++.....+|+|| +||+
T Consensus 1188 ~~~~r~~~q~l~~~~~~~~~~~v~v~-~~n~ 1217 (1706)
T 3cmw_A 1188 GLAARMMSQAMRKLAGNLKQSNTLLI-FINQ 1217 (1706)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCEEE-EEEC
T ss_pred cHHHHHHHHHHHHHHhhhccCCeEEE-Eecc
Confidence 67889999999999998888888888 7776
No 62
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.91 E-value=4.1e-27 Score=264.94 Aligned_cols=216 Identities=22% Similarity=0.309 Sum_probs=148.9
Q ss_pred cCccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhC--CeeEEEecccchh
Q 004267 476 PNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLT 553 (764)
Q Consensus 476 ~~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~--~~~i~v~~~~l~~ 553 (764)
|...|++++|++++++.+.+.+.+ -..+..+++++||+||||||||++|+++|++++ .+|+.++++++.+
T Consensus 32 ~~~~~~~iiG~~~~~~~l~~~~~~--------~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~ 103 (456)
T 2c9o_A 32 AKQAASGLVGQENAREACGVIVEL--------IKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYS 103 (456)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHH--------HHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCC
T ss_pred hhhchhhccCHHHHHHHHHHHHHH--------HHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHH
Confidence 456799999999999988766532 123556778999999999999999999999998 9999999999999
Q ss_pred cccCcchHHHHHHHHHH---hhCCCeEEEEecccchhhccCCCCCCC-CcchH---------------HHHHHHHHhhc-
Q 004267 554 MWFGESEANVREIFDKA---RQSAPCVLFFDELDSIATQRGSSVGDA-GGAAD---------------RVLNQLLTEMD- 613 (764)
Q Consensus 554 ~~~g~se~~i~~~f~~a---~~~~p~iifiDEid~l~~~r~~~~~~~-~~~~~---------------~~~~~lL~~ld- 613 (764)
+|+|+++. ++.+|+.| +...||||||||+|++++.|+....+. ..... ++.++++..|+
T Consensus 104 ~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~ 182 (456)
T 2c9o_A 104 TEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQK 182 (456)
T ss_dssp SSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHH
T ss_pred HhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhh
Confidence 99999998 99999999 888999999999999999886542111 00111 22234555554
Q ss_pred -CCCCCCcEEEEecCCCCCCCCccCCCCCccce--EEeecCCC--HHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCH
Q 004267 614 -GMSAKKTVFIIGATNRPDIIDPALLRPGRLDQ--LIYIPLPD--EDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSG 688 (764)
Q Consensus 614 -~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~--~i~~~~p~--~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~sg 688 (764)
+....+.++|++|||+++.+|++++||||||+ .+++|.|+ .++|.+|++.+.. .|++.++..++| |
T Consensus 183 ~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~-------~dl~~~a~~t~g--g 253 (456)
T 2c9o_A 183 ERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL-------HDLDVANARPQG--G 253 (456)
T ss_dssp TTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH-------HHHHHTC--------
T ss_pred ccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH-------HHHHHHHHhCCC--h
Confidence 44455667778999999999999999999999 67778774 4778888876653 278999999999 9
Q ss_pred HHHHHHHHH-------HHHHHHHHHHHH
Q 004267 689 ADITEICQR-------ACKYAIRENIEK 709 (764)
Q Consensus 689 ~di~~~~~~-------a~~~a~~~~~~~ 709 (764)
+||.++|.. +...++++.+..
T Consensus 254 adl~~l~~~i~~p~~~~I~~~lr~~I~~ 281 (456)
T 2c9o_A 254 QDILSMMGQLMKPKKTEITDKLRGEINK 281 (456)
T ss_dssp -----------------------CHHHH
T ss_pred hHHHHHHhhhcccchhhHHHHHHHHHHH
Confidence 999999954 444455555443
No 63
>1cz4_A VCP-like ATPase; double-PSI beta-barrel, beta-CLAM, substrate recognition DOM hydrolase; NMR {Thermoplasma acidophilum} SCOP: b.52.2.3 d.31.1.1 PDB: 1cz5_A
Probab=99.90 E-value=3.7e-23 Score=200.83 Aligned_cols=160 Identities=24% Similarity=0.322 Sum_probs=138.0
Q ss_pred CeEEEecccCC--CCcEEEECHHHHhhcCCCCCCEEEEEeCCCceEEEEEEcC--CCCCCCeEEEcHhHHhhcCcCCCCe
Q 004267 29 NRLVVDEAIND--DNSVVGLHPDTMDKLQIFRGDTILIKGKKRKDTICIALAD--DTCEQPKIRMNKVVRSNLRVRLGDV 104 (764)
Q Consensus 29 ~~~~v~~~~~~--~~~~v~~~~~~~~~l~~~~gd~v~i~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~r~~~~~~~g~~ 104 (764)
-+|+|++++++ |+++|||+|++|++||+.+||+|+|+|++ .++|.+||. ++++.+.|+||+.+|+|+|+++||.
T Consensus 7 i~L~V~~a~~~D~gr~ivrl~p~~m~~Lgl~~GD~V~I~G~r--~t~a~v~~~~~ed~~~g~Irid~~~R~N~gv~iGD~ 84 (185)
T 1cz4_A 7 IILRVAEANSTDPGMSRVRLDESSRRLLDAEIGDVVEIEKVR--KTVGRVYRARPEDENKGIVRIDSVMRNNCGASIGDK 84 (185)
T ss_dssp EEEEEECCSSCCCCSSEEEECHHHHHTTCCCTTCEEEEESSS--EEEEEEEECSSTTTTTSEEECCHHHHHHHTCCTTCE
T ss_pred EEEEEecCcccccCCCEEEECHHHHHHcCCCCCCEEEEEcCC--eEEEEEEEcCcCcCCCCEEEeCHHHHhccCCCCCCE
Confidence 47999999886 69999999999999999999999999986 466677764 7899999999999999999999999
Q ss_pred EEEEecCCCCCCcEEEecccc---CcccCcchhhHHHHHHHhhhhcCccccCCcEEEEec---Cce-eEEEEEEEecCCc
Q 004267 105 VSVHQCPDVKYGKRVHILPID---DTIEGVTGNLFDAFLRPYFTEAYRPVRKGDLFLVRG---GMR-SVEFKVIETDPGE 177 (764)
Q Consensus 105 v~v~~~~~~~~~~~v~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~---~~~-~~~f~v~~~~p~~ 177 (764)
|+|++ .++++|++|+++|.. .++. +.+. +..+++++|. .+||.+||.|.+.. .++ .+.|+|++++|.+
T Consensus 85 V~V~~-~~~~~A~~V~l~P~~~~~~~~~-~~~~-~~~~l~~~l~--~rpv~~Gd~v~v~~~~~~g~~~~~f~Vv~t~P~~ 159 (185)
T 1cz4_A 85 VKVRK-VRTEIAKKVTLAPIIRKDQRLK-FGEG-IEEYVQRALI--RRPMLEQDNISVPGLTLAGQTGLLFKVVKTLPSK 159 (185)
T ss_dssp EEEEE-ECCCBCSEEEEEEECSTTCCSC-CCSS-HHHHHHHHHT--TCEECTTCEECCSSCCCSSCCCCEEEEEEESSSS
T ss_pred EEEEE-CCCCCccEEEEecccccccccc-cccc-hHHHHHHHHC--CCcccCCCEEEEeeeccCCCeEEEEEEEEEcCCC
Confidence 99999 568999999999985 4433 3333 3679999996 48999999998863 446 7899999999999
Q ss_pred -eEeeCCCceEEecCCCCc
Q 004267 178 -YCVVAPDTEIFCEGEPIK 195 (764)
Q Consensus 178 -~~~~~~~t~i~~~~~~~~ 195 (764)
+++|+++|.|.+.++|+.
T Consensus 160 ~~v~Vt~~T~I~i~~~p~~ 178 (185)
T 1cz4_A 160 VPVEIGEETKIEIREEPAS 178 (185)
T ss_dssp SCEECCTTCEEEECSCCST
T ss_pred ceEEEcCCeEEEECCccch
Confidence 999999999999887764
No 64
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.88 E-value=8.6e-23 Score=216.13 Aligned_cols=175 Identities=23% Similarity=0.300 Sum_probs=138.5
Q ss_pred hCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhhhhccchhHHHHHHHHHHH----HhcCCeEEEEccccc
Q 004267 237 IGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEA----EKNAPSIIFIDEIDS 312 (764)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a----~~~~p~il~iDEid~ 312 (764)
.+..++.++||+||||||||+||+++|++++.+++.++++++.+.+.|+.+..++.+|+.+ +...|+||||||+|.
T Consensus 31 ~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~ 110 (293)
T 3t15_A 31 PNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDA 110 (293)
T ss_dssp TTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC-
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhh
Confidence 3567889999999999999999999999999999999999999999999999999999998 467899999999999
Q ss_pred cCCCCCCCc--hHHHHHHHHHHHHHhhccc-----------CCCeEEEEEecCCCCCCChhhhccCCcceEEEecCCChH
Q 004267 313 IAPKREKTH--GEVERRIVSQLLTLMDGLK-----------SRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEV 379 (764)
Q Consensus 313 l~~~~~~~~--~~~~~~v~~~Ll~~ld~~~-----------~~~~v~vI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~ 379 (764)
+++..+... ....+++...|+++|++.. ...+++||+|||+++.+|++++|++||+..+. .|+.+
T Consensus 111 ~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~~ 188 (293)
T 3t15_A 111 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRE 188 (293)
T ss_dssp -------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCHH
T ss_pred hcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCHH
Confidence 998554221 1234567788999988443 45679999999999999999999999999887 57999
Q ss_pred HHHHHHHHHhcCCCCCCchhhhHHhhhcCCCchHHHHH
Q 004267 380 GRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAA 417 (764)
Q Consensus 380 ~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~ 417 (764)
+|.+|++.+... .+.+...++..+.+|+++++..
T Consensus 189 ~r~~Il~~~~~~----~~~~~~~l~~~~~~~~~~~l~~ 222 (293)
T 3t15_A 189 DRIGVCTGIFRT----DNVPAEDVVKIVDNFPGQSIDF 222 (293)
T ss_dssp HHHHHHHHHHGG----GCCCHHHHHHHHHHSCSCCHHH
T ss_pred HHHHHHHHhccC----CCCCHHHHHHHhCCCCcccHHH
Confidence 999999977653 2456888999999999999864
No 65
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.87 E-value=1.2e-22 Score=216.79 Aligned_cols=216 Identities=21% Similarity=0.274 Sum_probs=170.8
Q ss_pred ccccccchhhhhcccceeeccCCChhhhhhccCCCC---cceeeeCCCCCChhHHHHHHHHHh-------CCeeEEEecc
Q 004267 480 WEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPS---KGVLFYGPPGCGKTLLAKAIANEC-------QANFISVKGP 549 (764)
Q Consensus 480 ~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~---~gill~GppGtGKT~lak~lA~~~-------~~~~i~v~~~ 549 (764)
+.+++|++.+++.+.+.+.+.. .+..+..+|+... .++||+||||||||++|+++|..+ ..+++.++++
T Consensus 30 ~~~i~G~~~~~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 108 (309)
T 3syl_A 30 DRELIGLKPVKDRIRETAALLL-VERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD 108 (309)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHH-HHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG
T ss_pred HHHccChHHHHHHHHHHHHHHH-hHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH
Confidence 4479999999999998877643 3445555565443 359999999999999999999987 3489999999
Q ss_pred cchhcccCcchHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCC
Q 004267 550 ELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNR 629 (764)
Q Consensus 550 ~l~~~~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~ 629 (764)
++.+.|+|.+...+..+|+.+. ++||||||+|.+...++. ......+++.|+..|+.. ..+++||++||.
T Consensus 109 ~l~~~~~g~~~~~~~~~~~~~~---~~vl~iDEid~l~~~~~~-----~~~~~~~~~~Ll~~l~~~--~~~~~~i~~~~~ 178 (309)
T 3syl_A 109 DLVGQYIGHTAPKTKEVLKRAM---GGVLFIDEAYYLYRPDNE-----RDYGQEAIEILLQVMENN--RDDLVVILAGYA 178 (309)
T ss_dssp GTCCSSTTCHHHHHHHHHHHHT---TSEEEEETGGGSCCCC--------CCTHHHHHHHHHHHHHC--TTTCEEEEEECH
T ss_pred HhhhhcccccHHHHHHHHHhcC---CCEEEEEChhhhccCCCc-----ccccHHHHHHHHHHHhcC--CCCEEEEEeCCh
Confidence 9999999999999999999873 579999999999865432 234578889999999863 356788899987
Q ss_pred CC-----CCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCCCcc-cHHHHHHH-------CCCCCHHHHHHHHH
Q 004267 630 PD-----IIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDV-DLRALAKY-------TQGFSGADITEICQ 696 (764)
Q Consensus 630 ~~-----~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~-~l~~la~~-------~~g~sg~di~~~~~ 696 (764)
++ .++|++++ ||+..++|++|+.+++.+|++.++++..+.-+. .+..++.. ....+++++.++++
T Consensus 179 ~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~ 256 (309)
T 3syl_A 179 DRMENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALD 256 (309)
T ss_dssp HHHHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHH
T ss_pred HHHHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHH
Confidence 54 35799998 999999999999999999999999876554222 34555554 23345899999999
Q ss_pred HHHHHHHHHHHH
Q 004267 697 RACKYAIRENIE 708 (764)
Q Consensus 697 ~a~~~a~~~~~~ 708 (764)
.|...+..+.+.
T Consensus 257 ~a~~~~~~r~~~ 268 (309)
T 3syl_A 257 RARLRQANRLFT 268 (309)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999988877654
No 66
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.84 E-value=2.5e-22 Score=220.86 Aligned_cols=169 Identities=20% Similarity=0.262 Sum_probs=83.1
Q ss_pred cccccchhhhhcccceeeccCCChhhhhhccCC-CCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccchh-cccCc
Q 004267 481 EDIGGLENVKRELQETVQYPVEHPEKFEKFGMS-PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT-MWFGE 558 (764)
Q Consensus 481 ~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~-~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~~-~~~g~ 558 (764)
.+|+|++++|+.+...+.++..++..+..+... +++++||+||||||||++|+++|..++.+|+.++++.+.+ +|+|+
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 579999999999988877665555444443332 4678999999999999999999999999999999999988 59995
Q ss_pred -chHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEec-CCCCCCCCcc
Q 004267 559 -SEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGA-TNRPDIIDPA 636 (764)
Q Consensus 559 -se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~a-Tn~~~~ld~a 636 (764)
.+..++.+|+.|... +++||++.+.... .+...++++++||++||++.....+ +++ ||+|+.||+|
T Consensus 95 d~e~~lr~lf~~a~~~----~~~De~d~~~~~~------~~~~e~rvl~~LL~~~dg~~~~~~v--~a~~TN~~~~ld~a 162 (444)
T 1g41_A 95 EVDSIIRDLTDSAMKL----VRQQEIAKNRARA------EDVAEERILDALLPPAKNQWGEVEN--HDSHSSTRQAFRKK 162 (444)
T ss_dssp CTHHHHHHHHHHHHHH----HHHHHHHSCC--------------------------------------------------
T ss_pred cHHHHHHHHHHHHHhc----chhhhhhhhhccc------hhhHHHHHHHHHHHHhhcccccccc--ccccccCHHHHHHH
Confidence 799999999999775 3589988765322 2345689999999999999766554 455 9999999999
Q ss_pred CCCCCccceEEeecCCCHH-HHHHHH
Q 004267 637 LLRPGRLDQLIYIPLPDED-SRHQIF 661 (764)
Q Consensus 637 llrpgRf~~~i~~~~p~~~-~r~~Il 661 (764)
|+||||||+.|++++|+.. .|.+||
T Consensus 163 L~rggr~D~~i~i~lP~~~~~~~ei~ 188 (444)
T 1g41_A 163 LREGQLDDKEIEIDVSAGVSMGVEIM 188 (444)
T ss_dssp --------------------------
T ss_pred HHcCCCcceEEEEcCCCCccchhhhh
Confidence 9999999999999999987 788876
No 67
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.82 E-value=3.6e-21 Score=220.34 Aligned_cols=234 Identities=21% Similarity=0.301 Sum_probs=159.3
Q ss_pred CccccccccchhhhhcccceeeccCCChhhhhhccCC-CCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccchh--
Q 004267 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMS-PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT-- 553 (764)
Q Consensus 477 ~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~-~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~~-- 553 (764)
..-++++.|++++++.+.+.+... .+... ++..++|+||||||||+||+++|+.++.+|+.+++..+..
T Consensus 77 ~~l~~di~G~~~vk~~i~~~~~l~--------~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~ 148 (543)
T 3m6a_A 77 RLLDEEHHGLEKVKERILEYLAVQ--------KLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDES 148 (543)
T ss_dssp GTHHHHCSSCHHHHHHHHHHHHHH--------HHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-----
T ss_pred HHHHHHhccHHHHHHHHHHHHHHH--------HhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhh
Confidence 445688999999998886654321 11111 3456999999999999999999999999999998776543
Q ss_pred -------cccCcchHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCC---------
Q 004267 554 -------MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSA--------- 617 (764)
Q Consensus 554 -------~~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~--------- 617 (764)
.|+|.....+...|..+....| ++||||||.+...+. ....+.||..||....
T Consensus 149 ~~~g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~----------~~~~~~LL~~ld~~~~~~~~~~~~~ 217 (543)
T 3m6a_A 149 EIRGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFR----------GDPSSAMLEVLDPEQNSSFSDHYIE 217 (543)
T ss_dssp ---------------CHHHHHHTTCSSSE-EEEEEESSSCC-------------------CCGGGTCTTTTTBCCCSSSC
T ss_pred hhhhHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhc----------cCHHHHHHHHHhhhhcceeecccCC
Confidence 6788888889999999877766 999999999876432 1245667888875321
Q ss_pred ----CCcEEEEecCCCCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHh-----ccCCCC------CcccHHHHHH-
Q 004267 618 ----KKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACL-----RKSPVS------KDVDLRALAK- 681 (764)
Q Consensus 618 ----~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~-----~~~~~~------~~~~l~~la~- 681 (764)
..+++||+|||+++.|+|+|++ ||+ +|+|++|+.+++..|++.++ +...+. ++..+..++.
T Consensus 218 ~~~~~~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~ 294 (543)
T 3m6a_A 218 ETFDLSKVLFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRY 294 (543)
T ss_dssp CCCBCSSCEEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHH
T ss_pred eeecccceEEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHh
Confidence 2578999999999999999999 996 79999999999999999887 222332 1223455555
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCCCccccccccccccccccHHHHHHHHHhcCCCC
Q 004267 682 YTQGFSGADITEICQRACKYAIRENIEKDIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRSI 752 (764)
Q Consensus 682 ~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~s~ 752 (764)
.+...+.+++++.+..++..|..+.+.. +.....|+.+|+++++...+...
T Consensus 295 ~~~~~~vR~L~~~i~~~~~~aa~~~~~~--------------------~~~~~~It~~~l~~~Lg~~~~~~ 345 (543)
T 3m6a_A 295 YTREAGVRSLERQLAAICRKAAKAIVAE--------------------ERKRITVTEKNLQDFIGKRIFRY 345 (543)
T ss_dssp HCCCSSSHHHHHHHHHHHHHHHHHHHTT--------------------CCSCCEECTTTTHHHHCSCCSCC
T ss_pred CChhhchhHHHHHHHHHHHHHHHHHHhc--------------------CCcceecCHHHHHHHhCCcccCc
Confidence 3333556777777666665555544321 12235799999999998766554
No 68
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.80 E-value=2.2e-19 Score=196.31 Aligned_cols=220 Identities=20% Similarity=0.277 Sum_probs=161.4
Q ss_pred cCccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCC--eeEEEecccchh
Q 004267 476 PNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLT 553 (764)
Q Consensus 476 ~~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~--~~i~v~~~~l~~ 553 (764)
|...|+++.|.+.+++.+...... + ..+..++.++||+||||||||++|+++|..++. +|+.+++.++.+
T Consensus 39 p~~~~~~ivG~~~~~~~l~~l~~~-------~-~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 110 (368)
T 3uk6_A 39 PRQASQGMVGQLAARRAAGVVLEM-------I-REGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFS 110 (368)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHH-------H-HTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSC
T ss_pred cCcchhhccChHHHHHHHHHHHHH-------H-HcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhh
Confidence 445699999999998876543221 1 113345678999999999999999999999864 888888877554
Q ss_pred cccC-------------------------------------------------cchHHHHHHHHHHhh---------CCC
Q 004267 554 MWFG-------------------------------------------------ESEANVREIFDKARQ---------SAP 575 (764)
Q Consensus 554 ~~~g-------------------------------------------------~se~~i~~~f~~a~~---------~~p 575 (764)
.+++ +....++..|..+.. ..|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~ 190 (368)
T 3uk6_A 111 LEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIP 190 (368)
T ss_dssp SSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CB
T ss_pred cccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccC
Confidence 4433 234456666655433 126
Q ss_pred eEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecC-----------CCCCCCCccCCCCCccc
Q 004267 576 CVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGAT-----------NRPDIIDPALLRPGRLD 644 (764)
Q Consensus 576 ~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aT-----------n~~~~ld~allrpgRf~ 644 (764)
+|+||||+|.+. ....+.|+..++... ..+++++++ |.++.+++++++ ||.
T Consensus 191 ~vl~IDEi~~l~--------------~~~~~~L~~~le~~~--~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~ 252 (368)
T 3uk6_A 191 GVLFIDEVHMLD--------------IESFSFLNRALESDM--APVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLL 252 (368)
T ss_dssp CEEEEESGGGSB--------------HHHHHHHHHHTTCTT--CCEEEEEESCSEEECBTSSCEEETTCCHHHHT--TEE
T ss_pred ceEEEhhccccC--------------hHHHHHHHHHhhCcC--CCeeeeecccceeeeeccCCCCcccCCHHHHh--hcc
Confidence 899999999873 345677777776533 235554443 458889999998 997
Q ss_pred eEEeecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCCCcc
Q 004267 645 QLIYIPLPDEDSRHQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRRDNPEA 723 (764)
Q Consensus 645 ~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~ 723 (764)
. ++|++|+.+++.+|++..+...++. ++..+..+++.+.+.+++++.++|+.|+..|..+.
T Consensus 253 ~-i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~----------------- 314 (368)
T 3uk6_A 253 I-VSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRK----------------- 314 (368)
T ss_dssp E-EEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTT-----------------
T ss_pred E-EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC-----------------
Confidence 6 8999999999999999988765443 23347788888876799999999999998886543
Q ss_pred ccccccccccccccHHHHHHHHHhc
Q 004267 724 MDEDAAEDEVSEIKAAHFEESMKFA 748 (764)
Q Consensus 724 ~~~~~~~~~~~~i~~~~f~~a~~~~ 748 (764)
...|+.+|+++|+...
T Consensus 315 ---------~~~It~~~v~~a~~~~ 330 (368)
T 3uk6_A 315 ---------GTEVQVDDIKRVYSLF 330 (368)
T ss_dssp ---------CSSBCHHHHHHHHHHS
T ss_pred ---------CCCCCHHHHHHHHHHh
Confidence 2369999999999874
No 69
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.80 E-value=4.4e-19 Score=185.72 Aligned_cols=177 Identities=24% Similarity=0.350 Sum_probs=135.4
Q ss_pred cCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccchhcccCcch----HHHHHHHHHHhhCCCeEEEEecccch
Q 004267 511 GMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESE----ANVREIFDKARQSAPCVLFFDELDSI 586 (764)
Q Consensus 511 ~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~~~~~g~se----~~i~~~f~~a~~~~p~iifiDEid~l 586 (764)
+..++.++||+||||||||++|+++|...+.+|+.+++++. ++|.++ ..++.+|+.+....+++|||||||.+
T Consensus 60 ~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l 136 (272)
T 1d2n_A 60 DRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDK---MIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERL 136 (272)
T ss_dssp SSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGG---CTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHH
T ss_pred CCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHH---hcCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhh
Confidence 45667789999999999999999999999999999988763 445443 57889999998888999999999999
Q ss_pred hhccCCCCCCCCcchHHHHHHHHHhhcCCC-CCCcEEEEecCCCCCCCCccCCCCCccceEEeecCCCH-HHHHHHHHHH
Q 004267 587 ATQRGSSVGDAGGAADRVLNQLLTEMDGMS-AKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDE-DSRHQIFKAC 664 (764)
Q Consensus 587 ~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~-~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~-~~r~~Il~~~ 664 (764)
++.+..+ ......+++.|+..+++.. ...+++||+|||.++.+|+..++ +||+..|++|+++. ++...++..
T Consensus 137 ~~~~~~~----~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~-~rf~~~i~~p~l~~r~~i~~i~~~- 210 (272)
T 1d2n_A 137 LDYVPIG----PRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEML-NAFSTTIHVPNIATGEQLLEALEL- 210 (272)
T ss_dssp TTCBTTT----TBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCT-TTSSEEEECCCEEEHHHHHHHHHH-
T ss_pred hccCCCC----hhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhh-cccceEEcCCCccHHHHHHHHHHh-
Confidence 8765432 2345677888888888764 34578899999999999984333 39999999987765 444444443
Q ss_pred hccCCCCCcccHHHHHHHCCCC----CHHHHHHHHHHHH
Q 004267 665 LRKSPVSKDVDLRALAKYTQGF----SGADITEICQRAC 699 (764)
Q Consensus 665 ~~~~~~~~~~~l~~la~~~~g~----sg~di~~~~~~a~ 699 (764)
...+ .+.++..+++.+.|| +-+++.++++.|.
T Consensus 211 --~~~~-~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~ 246 (272)
T 1d2n_A 211 --LGNF-KDKERTTIAQQVKGKKVWIGIKKLLMLIEMSL 246 (272)
T ss_dssp --HTCS-CHHHHHHHHHHHTTSEEEECHHHHHHHHHHHT
T ss_pred --cCCC-CHHHHHHHHHHhcCCCccccHHHHHHHHHHHh
Confidence 3333 455688888888887 5667777766554
No 70
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.80 E-value=1.1e-19 Score=193.73 Aligned_cols=246 Identities=20% Similarity=0.302 Sum_probs=168.8
Q ss_pred cccccchhhhhcccceeeccCCChhhhhhc-cCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccchh-cccCc
Q 004267 481 EDIGGLENVKRELQETVQYPVEHPEKFEKF-GMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT-MWFGE 558 (764)
Q Consensus 481 ~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~-~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~~-~~~g~ 558 (764)
+++.|++.+++.+...+..+.........+ +-..+.+++|+||||||||++|+++|..++.+++.++++++.. .|+|.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 458899999888876654322111111100 1134568999999999999999999999999999999998876 67765
Q ss_pred c-hHHHHHHHHHHh-----hCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCC--------CCCcEEEE
Q 004267 559 S-EANVREIFDKAR-----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS--------AKKTVFII 624 (764)
Q Consensus 559 s-e~~i~~~f~~a~-----~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~--------~~~~v~vi 624 (764)
. +..++.+|..+. ...++|+||||+|.+...+... ........+.+.|+..|++.. ...++++|
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~--~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i 172 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYS--GADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFI 172 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCC--SSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEE
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCcccccc--ccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEE
Confidence 4 456777776431 1235799999999998764321 111222345788888888642 23467888
Q ss_pred ec----CCCCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHH-----------hccCCCC---CcccHHHHHHHC---
Q 004267 625 GA----TNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKAC-----------LRKSPVS---KDVDLRALAKYT--- 683 (764)
Q Consensus 625 ~a----Tn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~-----------~~~~~~~---~~~~l~~la~~~--- 683 (764)
++ ++.+..++|++++ ||+..++|++|+.+++.+|++.. ++..... ++..++.+++.+
T Consensus 173 ~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~ 250 (310)
T 1ofh_A 173 ASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRV 250 (310)
T ss_dssp EEECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHH
T ss_pred EcCCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhh
Confidence 88 5678899999997 99999999999999999999831 1112211 223466666665
Q ss_pred ----CCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCCCccccccccccccccccHHHHHHHHHhcCC
Q 004267 684 ----QGFSGADITEICQRACKYAIRENIEKDIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARR 750 (764)
Q Consensus 684 ----~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~ 750 (764)
.+.+.+++.++|+.+...+..+... .+.....|+.+|+++|++....
T Consensus 251 ~~~~~~g~~R~l~~~l~~~~~~~~~~~~~--------------------~~~~~~~i~~~~v~~~l~~~~~ 301 (310)
T 1ofh_A 251 NEKTENIGARRLHTVMERLMDKISFSASD--------------------MNGQTVNIDAAYVADALGEVVE 301 (310)
T ss_dssp HHHSCCCTTHHHHHHHHHHSHHHHHHGGG--------------------CTTCEEEECHHHHHHHTCSSSS
T ss_pred cccccccCcHHHHHHHHHHHHhhhcCCcc--------------------ccCCEEEEeeHHHHHHHHhhhh
Confidence 2578899999999887665433211 0112235999999999987644
No 71
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.78 E-value=1.9e-19 Score=196.56 Aligned_cols=223 Identities=20% Similarity=0.309 Sum_probs=154.1
Q ss_pred ccccchhhhhcccceeeccCCChhhh-hhccC-CCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccchhc-ccCc
Q 004267 482 DIGGLENVKRELQETVQYPVEHPEKF-EKFGM-SPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM-WFGE 558 (764)
Q Consensus 482 ~i~g~~~~k~~l~~~v~~~~~~~~~~-~~~~~-~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~~~-~~g~ 558 (764)
.|.|++.+++.+...+.......... ..... .++.++||+||||||||++|+++|..++.+|+.++++++... |+|.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~ 95 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence 36899999988877664221111100 00011 245679999999999999999999999999999999998744 8887
Q ss_pred c-hHHHHHHHHHH----hhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCC-----------CCCcEE
Q 004267 559 S-EANVREIFDKA----RQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-----------AKKTVF 622 (764)
Q Consensus 559 s-e~~i~~~f~~a----~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~-----------~~~~v~ 622 (764)
. +..++.+|+.+ ....++||||||||.+...+............++.+.||+.|++.. ...+++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~ 175 (363)
T 3hws_A 96 DVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 175 (363)
T ss_dssp HHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CC
T ss_pred cHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceE
Confidence 6 66788888876 4456789999999999887655433333334558999999999531 112344
Q ss_pred EEecCCC--------C----------CC-----------------------------------CCccCCCCCccceEEee
Q 004267 623 IIGATNR--------P----------DI-----------------------------------IDPALLRPGRLDQLIYI 649 (764)
Q Consensus 623 vi~aTn~--------~----------~~-----------------------------------ld~allrpgRf~~~i~~ 649 (764)
+|+|||. . .. ++|+|+. ||+.++.|
T Consensus 176 ~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~~ 253 (363)
T 3hws_A 176 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVATL 253 (363)
T ss_dssp CCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEEC
T ss_pred EEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeeec
Confidence 5555554 1 11 6777776 99999999
Q ss_pred cCCCHHHHHHHHHH----Hh-------ccCCCC---CcccHHHHHH--HCCCCCHHHHHHHHHHHHHHHHHHH
Q 004267 650 PLPDEDSRHQIFKA----CL-------RKSPVS---KDVDLRALAK--YTQGFSGADITEICQRACKYAIREN 706 (764)
Q Consensus 650 ~~p~~~~r~~Il~~----~~-------~~~~~~---~~~~l~~la~--~~~g~sg~di~~~~~~a~~~a~~~~ 706 (764)
++|+.+++.+|++. ++ ...... .+.-++.|++ ....+.+++|+++++.+...++.+.
T Consensus 254 ~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~~ 326 (363)
T 3hws_A 254 NELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDL 326 (363)
T ss_dssp CCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHST
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHhc
Confidence 99999999999986 22 111222 1223566665 4456778999999999998877654
No 72
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.76 E-value=4.7e-18 Score=181.15 Aligned_cols=211 Identities=16% Similarity=0.243 Sum_probs=160.7
Q ss_pred cccChHHHHHHHHHHHHccccChhhhhhhCCCC---CceEEEECCCCCCHHHHHHHHHHHhC-------CeEEEEechhh
Q 004267 209 DVGGVRKQMAQIRELVELPLRHPQLFKSIGVKP---PKGILLYGPPGSGKTLIARAVANETG-------AFFFCINGPEI 278 (764)
Q Consensus 209 ~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~---~~~vLL~GppGtGKTtLar~la~~l~-------~~~i~v~~~~l 278 (764)
+++|+++.++.+.+++..+. .+..++.+|+.. +.++||+||||||||++|+++|+.++ .+++.+++.++
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLL-VERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHH-HHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred HccChHHHHHHHHHHHHHHH-hHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence 79999999999999998754 466777777654 34699999999999999999999883 37899999999
Q ss_pred hhhccchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCC---
Q 004267 279 MSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPN--- 355 (764)
Q Consensus 279 ~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~--- 355 (764)
.+.+.|.....+..+|..+ .+++|||||+|.++..+.. ......+...|+..++... .++++|++++.+.
T Consensus 111 ~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~--~~~~~~~~~~Ll~~l~~~~--~~~~~i~~~~~~~~~~ 183 (309)
T 3syl_A 111 VGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNE--RDYGQEAIEILLQVMENNR--DDLVVILAGYADRMEN 183 (309)
T ss_dssp CCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC-----CCTHHHHHHHHHHHHHCT--TTCEEEEEECHHHHHH
T ss_pred hhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCc--ccccHHHHHHHHHHHhcCC--CCEEEEEeCChHHHHH
Confidence 9999998888888888887 4679999999999866532 1223556778888888643 4667788887543
Q ss_pred --CCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCC-CchhhhHHhhhc------CC-CchHHHHHHHHHHHHH
Q 004267 356 --SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDT------HG-YVGADLAALCTEAALQ 425 (764)
Q Consensus 356 --~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t------~g-~~~~dl~~l~~~a~~~ 425 (764)
.++|++++ ||+..+.++.|+.+++.+|++.++...... ++..+..++... .. -.++++..++..+...
T Consensus 184 ~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~~ 261 (309)
T 3syl_A 184 FFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRARLR 261 (309)
T ss_dssp HHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHH
T ss_pred HHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHH
Confidence 24688888 899999999999999999999887654432 223345555542 22 3377888888888776
Q ss_pred HHHh
Q 004267 426 CIRE 429 (764)
Q Consensus 426 ~~~~ 429 (764)
+..+
T Consensus 262 ~~~r 265 (309)
T 3syl_A 262 QANR 265 (309)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 73
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.76 E-value=5.9e-18 Score=182.86 Aligned_cols=193 Identities=21% Similarity=0.295 Sum_probs=146.4
Q ss_pred ccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccchhcccC
Q 004267 478 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFG 557 (764)
Q Consensus 478 v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~~~~~g 557 (764)
..|++++|.+.+++.+...+..... .-.+..++||+||||||||++|+++|..++.+|+.++++.+.
T Consensus 26 ~~~~~iiG~~~~~~~l~~~l~~~~~--------~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~----- 92 (338)
T 3pfi_A 26 SNFDGYIGQESIKKNLNVFIAAAKK--------RNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE----- 92 (338)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHHHH--------TTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC-----
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHh--------cCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc-----
Confidence 4689999999999888776543211 113456799999999999999999999999999999987652
Q ss_pred cchHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCC----------------CCCcE
Q 004267 558 ESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS----------------AKKTV 621 (764)
Q Consensus 558 ~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~----------------~~~~v 621 (764)
....+..++.. ...++++|||||+.+.. ...+.|+..|+... ...++
T Consensus 93 -~~~~~~~~~~~--~~~~~vl~lDEi~~l~~--------------~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (338)
T 3pfi_A 93 -KSGDLAAILTN--LSEGDILFIDEIHRLSP--------------AIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKF 155 (338)
T ss_dssp -SHHHHHHHHHT--CCTTCEEEEETGGGCCH--------------HHHHHHHHHHHTSCC---------CCCCCCCCCCC
T ss_pred -chhHHHHHHHh--ccCCCEEEEechhhcCH--------------HHHHHHHHHHHhccchhhcccCccccceecCCCCe
Confidence 23445555543 34568999999998742 34555666665432 01148
Q ss_pred EEEecCCCCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCCCCHHHHHHHHHHHHH
Q 004267 622 FIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRACK 700 (764)
Q Consensus 622 ~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~~g~sg~di~~~~~~a~~ 700 (764)
++|+|||+...+++++++ ||+..++|++|+.+++..|++.+++..++. .+..+..++..+. .+.+++.++++.|..
T Consensus 156 ~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~-G~~r~l~~~l~~~~~ 232 (338)
T 3pfi_A 156 TLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSR-STPRIALRLLKRVRD 232 (338)
T ss_dssp EEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTT-TCHHHHHHHHHHHHH
T ss_pred EEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHC-cCHHHHHHHHHHHHH
Confidence 999999999999999998 999999999999999999999998776644 2334667777554 578899999988876
Q ss_pred HHH
Q 004267 701 YAI 703 (764)
Q Consensus 701 ~a~ 703 (764)
.|.
T Consensus 233 ~a~ 235 (338)
T 3pfi_A 233 FAD 235 (338)
T ss_dssp HHH
T ss_pred HHH
Confidence 664
No 74
>1wlf_A PEX1, peroxisome biogenesis factor 1; N-terminal domain, protein transport; 2.05A {Mus musculus} SCOP: b.52.2.3 d.31.1.1
Probab=99.74 E-value=1.9e-17 Score=159.75 Aligned_cols=160 Identities=14% Similarity=0.203 Sum_probs=126.9
Q ss_pred CeEEEecccCCCCcEEEECHHHHhhcCCCCCCEEEEEeCCCceEEEEEEcCC--CCCCCeEEEcHhHHhhcCcCCCCeEE
Q 004267 29 NRLVVDEAINDDNSVVGLHPDTMDKLQIFRGDTILIKGKKRKDTICIALADD--TCEQPKIRMNKVVRSNLRVRLGDVVS 106 (764)
Q Consensus 29 ~~~~v~~~~~~~~~~v~~~~~~~~~l~~~~gd~v~i~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~r~~~~~~~g~~v~ 106 (764)
..+.|.=... .++.|+|+++.|+.|++.+||+|+|+|+++..+++|....+ +.+.+.|+||+.+|+|+|++.||.|+
T Consensus 13 ~~~~v~~~~~-~~~~vrL~~~~~~~L~~~~gd~VeI~g~~~t~~~~w~~~~~~~d~~~~~I~Id~~~r~n~gv~~Gd~V~ 91 (179)
T 1wlf_A 13 AVVTVAFTNA-RDCFLHLPRRLVAQLHLLQNQAIEVASDHQPTYLSWVEGRHFNDQSENVAEINRQVGQKLGLSSGDQVF 91 (179)
T ss_dssp EEEEEEEECC-SSSCEEECHHHHHHTTCCTTCCEEEESSSCCEEECEEECSSCC---CCEEEEEHHHHHHTTCCTTCEEE
T ss_pred EEEEEEEECC-CCcEEECCHHHHHHcCCCCCcEEEEEeCCeeEEEEEECCCCcccCCCCEEEECHHHHhHCCCCCCCEEE
Confidence 4566653333 68899999999999999999999999987544444444344 67899999999999999999999999
Q ss_pred EEecCCCCCCcEEEeccccCc-ccCcchhhHHHHHHHhhhhcCccccCCcEEEEecCc-eeEEEEEEEecC-CceEeeCC
Q 004267 107 VHQCPDVKYGKRVHILPIDDT-IEGVTGNLFDAFLRPYFTEAYRPVRKGDLFLVRGGM-RSVEFKVIETDP-GEYCVVAP 183 (764)
Q Consensus 107 v~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~-~~~~f~v~~~~p-~~~~~~~~ 183 (764)
|+++.+++.|++|+++|.+.. ++ + .+....+|+.+|..+.|+|.+||.|.+...+ ..+.|+|+++.| .+++.+++
T Consensus 92 V~~~~~~~~A~~V~laP~~~dD~e-i-~e~~a~~le~~Ll~QiR~v~~G~~i~v~~~g~~~i~f~V~~~~P~~~~v~It~ 169 (179)
T 1wlf_A 92 LRPCSHVVSCQQVEVEPLSADDWE-I-LELHAISLEQHLLDQIRIVFPKAVVPIWVDQQTYIFIQIVTLMPAAPYGRLET 169 (179)
T ss_dssp EEECSCCEECSEEEEEESSHHHHH-H-HHHSCSSHHHHHHHHCCEECTTCEEEEESSSSCEEEEEEEEEESCCSSEECCT
T ss_pred EEECCCCccceEEEEEcCCcCCeE-E-ehhHHHHHHHHHhcCceeccCCCEEEEEecCCeEEEEEEEEeeCCCCeEEECC
Confidence 999778999999999998521 11 1 1223457888888888999999999985433 678999999999 88999999
Q ss_pred CceEEecC
Q 004267 184 DTEIFCEG 191 (764)
Q Consensus 184 ~t~i~~~~ 191 (764)
+|+|.+..
T Consensus 170 ~TeI~v~p 177 (179)
T 1wlf_A 170 NTKLLIQP 177 (179)
T ss_dssp TCEEEECC
T ss_pred CcEEEEec
Confidence 99998753
No 75
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.72 E-value=8.9e-18 Score=209.29 Aligned_cols=150 Identities=19% Similarity=0.263 Sum_probs=111.2
Q ss_pred CCCcccccChHHHHHHHHHHHHccccC----------hhhhhh------hC------------CCCCceEEEECCCCCCH
Q 004267 204 EVGYDDVGGVRKQMAQIRELVELPLRH----------PQLFKS------IG------------VKPPKGILLYGPPGSGK 255 (764)
Q Consensus 204 ~~~~~~i~Gl~~~~~~l~e~i~~~l~~----------~~~~~~------l~------------i~~~~~vLL~GppGtGK 255 (764)
.++|++++|+++.++.+.+.+.+|+.+ ++.|+. .| ++.++.+||||||||||
T Consensus 1016 ~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~GK 1095 (1706)
T 3cmw_A 1016 GSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGK 1095 (1706)
T ss_dssp --------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSH
T ss_pred CceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCCh
Confidence 468999999999999999999998844 556655 22 34555599999999999
Q ss_pred HHHHHHHHHHh---CCeEEEEechh----hh--------hhccch----hHHHHHHHHHHHHhcCCeEEEEccccccCCC
Q 004267 256 TLIARAVANET---GAFFFCINGPE----IM--------SKLAGE----SESNLRKAFEEAEKNAPSIIFIDEIDSIAPK 316 (764)
Q Consensus 256 TtLar~la~~l---~~~~i~v~~~~----l~--------~~~~g~----~~~~l~~vf~~a~~~~p~il~iDEid~l~~~ 316 (764)
|+||++++.+. +.+.+.|+..+ +. +++.++ +++.++.+|..|+...|+++|+|++++|+|.
T Consensus 1096 T~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~~~ 1175 (1706)
T 3cmw_A 1096 TTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPK 1175 (1706)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCCH
T ss_pred HHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcCcc
Confidence 99999998765 44445555443 33 566677 8999999999999999999999999999998
Q ss_pred CC---CC---chHHHHHHHHHHHHHhhcccCCCeEEEEEecCCC
Q 004267 317 RE---KT---HGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRP 354 (764)
Q Consensus 317 ~~---~~---~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~ 354 (764)
++ .. ...+..|+++|++..|+++....+|+|| +||+.
T Consensus 1176 ~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1176 AEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQI 1218 (1706)
T ss_dssp HHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEE-EEECE
T ss_pred cccccccccccccHHHHHHHHHHHHHHhhhccCCeEEE-Eeccc
Confidence 32 11 1256778999999999998877788888 55543
No 76
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.70 E-value=1.6e-17 Score=182.27 Aligned_cols=246 Identities=17% Similarity=0.211 Sum_probs=152.3
Q ss_pred cccccchhhhhcccceeeccCCChhhhh-----------------hccCCCCcceeeeCCCCCChhHHHHHHHHHhCCee
Q 004267 481 EDIGGLENVKRELQETVQYPVEHPEKFE-----------------KFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANF 543 (764)
Q Consensus 481 ~~i~g~~~~k~~l~~~v~~~~~~~~~~~-----------------~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~ 543 (764)
+.|+|++.+++.|...+........... .-...++.+++|+||||||||++|+++|..++.+|
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~ 100 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPI 100 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 4588999999998876632221111000 00123456799999999999999999999999999
Q ss_pred EEEecccch-hcccCcc-hHHHHHHHHHHh----hCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCC-
Q 004267 544 ISVKGPELL-TMWFGES-EANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS- 616 (764)
Q Consensus 544 i~v~~~~l~-~~~~g~s-e~~i~~~f~~a~----~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~- 616 (764)
+.+++..+. ..|+|.. +..+..+|..+. ...++|+||||+|.+...++......+.....+.+.||..|++..
T Consensus 101 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~ 180 (376)
T 1um8_A 101 AISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLV 180 (376)
T ss_dssp EEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEE
T ss_pred EEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhccce
Confidence 999998875 4677765 455677776543 235689999999999876543322222223458889999998641
Q ss_pred ------------------CCCcEEEEecCCCC-----------------------------------------CCCCccC
Q 004267 617 ------------------AKKTVFIIGATNRP-----------------------------------------DIIDPAL 637 (764)
Q Consensus 617 ------------------~~~~v~vi~aTn~~-----------------------------------------~~ld~al 637 (764)
...++++|+|||.. ..+.|++
T Consensus 181 ~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l 260 (376)
T 1um8_A 181 NIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPEL 260 (376)
T ss_dssp C---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHH
T ss_pred ecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHH
Confidence 12456777777621 1234555
Q ss_pred CCCCccceEEeecCCCHHHHHHHHHH----Hhc-------cCCCC---CcccHHHHHHHCC--CCCHHHHHHHHHHHHHH
Q 004267 638 LRPGRLDQLIYIPLPDEDSRHQIFKA----CLR-------KSPVS---KDVDLRALAKYTQ--GFSGADITEICQRACKY 701 (764)
Q Consensus 638 lrpgRf~~~i~~~~p~~~~r~~Il~~----~~~-------~~~~~---~~~~l~~la~~~~--g~sg~di~~~~~~a~~~ 701 (764)
+. ||+.++.|++++.++...|++. +++ ..... ++.-+..|++... ..+.+++.+++..+...
T Consensus 261 ~~--R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~~~~ 338 (376)
T 1um8_A 261 IG--RLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCLD 338 (376)
T ss_dssp HT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHH
T ss_pred hc--CCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHHHHHH
Confidence 55 9999999999999999999962 111 11111 1223556666532 46789999999999888
Q ss_pred HHHHHHHHhHHHHhhhcCCCccccccccccccccccHHHHHHHHHhc
Q 004267 702 AIRENIEKDIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFA 748 (764)
Q Consensus 702 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~ 748 (764)
++.+.... ......|+.++++++.+.+
T Consensus 339 ~~~~~~~~--------------------~~~~~~i~~~~v~~~~~~~ 365 (376)
T 1um8_A 339 IMFDLPKL--------------------KGSEVRITKDCVLKQAEPL 365 (376)
T ss_dssp HHHTGGGG--------------------TTSEEEECHHHHTTSSCCE
T ss_pred HHhhccCC--------------------CCCEEEEeHHHhcCCCCce
Confidence 77765321 0123468888887755443
No 77
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.69 E-value=1.2e-16 Score=171.40 Aligned_cols=193 Identities=23% Similarity=0.358 Sum_probs=140.6
Q ss_pred ccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccchhcccC
Q 004267 478 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFG 557 (764)
Q Consensus 478 v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~~~~~g 557 (764)
.+|+++.|.+.+++.+.+.+.... . .-..+.+++|+||||||||++|++++..++.+|+.++++.+.
T Consensus 9 ~~~~~~ig~~~~~~~l~~~l~~~~-------~-~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~----- 75 (324)
T 1hqc_A 9 KTLDEYIGQERLKQKLRVYLEAAK-------A-RKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIE----- 75 (324)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHHHH-------H-HCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCC-----
T ss_pred ccHHHhhCHHHHHHHHHHHHHHHH-------c-cCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccC-----
Confidence 468899999988888776554211 1 112446799999999999999999999999999999987652
Q ss_pred cchHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCC----------------CCCcE
Q 004267 558 ESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS----------------AKKTV 621 (764)
Q Consensus 558 ~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~----------------~~~~v 621 (764)
....+...|..+ ...++++||||++.+.. ...+.|+..|+... ...++
T Consensus 76 -~~~~l~~~l~~~-~~~~~~l~lDEi~~l~~--------------~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (324)
T 1hqc_A 76 -KPGDLAAILANS-LEEGDILFIDEIHRLSR--------------QAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRF 139 (324)
T ss_dssp -SHHHHHHHHTTT-CCTTCEEEETTTTSCCH--------------HHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCC
T ss_pred -ChHHHHHHHHHh-ccCCCEEEEECCccccc--------------chHHHHHHHHHhhhhHHhccccccccccccCCCCE
Confidence 223333333331 24568999999998743 22334444443221 11257
Q ss_pred EEEecCCCCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCCCCHHHHHHHHHHHHH
Q 004267 622 FIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRACK 700 (764)
Q Consensus 622 ~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~~g~sg~di~~~~~~a~~ 700 (764)
.+|++||+++.+++++.+ ||+.++.+++|+.+++..+++.++.+.++. ++..+..++..+.| +.+++.++++.+..
T Consensus 140 ~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~~~ 216 (324)
T 1hqc_A 140 TLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRG-TMRVAKRLFRRVRD 216 (324)
T ss_dssp EEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCS-CHHHHHHHHHHHTT
T ss_pred EEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHH
Confidence 899999999999999998 999999999999999999999998765543 23346788888754 67889888887765
Q ss_pred HH
Q 004267 701 YA 702 (764)
Q Consensus 701 ~a 702 (764)
.|
T Consensus 217 ~a 218 (324)
T 1hqc_A 217 FA 218 (324)
T ss_dssp TS
T ss_pred HH
Confidence 54
No 78
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.69 E-value=3.7e-16 Score=171.43 Aligned_cols=223 Identities=16% Similarity=0.192 Sum_probs=154.0
Q ss_pred cccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHh---------CCeeEEEecccc
Q 004267 481 EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---------QANFISVKGPEL 551 (764)
Q Consensus 481 ~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~---------~~~~i~v~~~~l 551 (764)
+++.|.+...+.+...+..... ...+.+++|+||||||||++|++++..+ +..++.+++...
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 89 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALR---------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHR 89 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTS---------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTS
T ss_pred CCCCCHHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcC
Confidence 6678888777777655432111 1335679999999999999999999987 788999997653
Q ss_pred hhc----------------ccCcchHH-HHHHHHHHhh-CCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhc
Q 004267 552 LTM----------------WFGESEAN-VREIFDKARQ-SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMD 613 (764)
Q Consensus 552 ~~~----------------~~g~se~~-i~~~f~~a~~-~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld 613 (764)
.+. +.|.+... ...+++.... ..|++|||||++.+...+ ....++..++..++
T Consensus 90 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~---------~~~~~l~~l~~~~~ 160 (387)
T 2v1u_A 90 ETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP---------GGQDLLYRITRINQ 160 (387)
T ss_dssp CSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST---------THHHHHHHHHHGGG
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC---------CCChHHHhHhhchh
Confidence 221 12322333 4555555543 347899999999986531 13567788887776
Q ss_pred CCCCCCcEEEEecCCCC---CCCCccCCCCCccce-EEeecCCCHHHHHHHHHHHhcc--CCC-CCcccHHHHHHHCC--
Q 004267 614 GMSAKKTVFIIGATNRP---DIIDPALLRPGRLDQ-LIYIPLPDEDSRHQIFKACLRK--SPV-SKDVDLRALAKYTQ-- 684 (764)
Q Consensus 614 ~~~~~~~v~vi~aTn~~---~~ld~allrpgRf~~-~i~~~~p~~~~r~~Il~~~~~~--~~~-~~~~~l~~la~~~~-- 684 (764)
......++.+|++||.+ +.+++++.+ ||.. .++|++|+.+++.+|++..++. .+. -.+..++.+++.+.
T Consensus 161 ~~~~~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 238 (387)
T 2v1u_A 161 ELGDRVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAARE 238 (387)
T ss_dssp CC-----CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSS
T ss_pred hcCCCceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHh
Confidence 55324578899999987 678889988 8875 9999999999999999988764 221 12334667777765
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCCCccccccccccccccccHHHHHHHHHhcC
Q 004267 685 GFSGADITEICQRACKYAIRENIEKDIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFAR 749 (764)
Q Consensus 685 g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~ 749 (764)
.-+.+.+.++|+.|+..|..+. ...|+.+|+.+|+..+.
T Consensus 239 ~G~~r~~~~~l~~a~~~a~~~~--------------------------~~~i~~~~v~~a~~~~~ 277 (387)
T 2v1u_A 239 HGDARRALDLLRVAGEIAERRR--------------------------EERVRREHVYSARAEIE 277 (387)
T ss_dssp SCCHHHHHHHHHHHHHHHHHTT--------------------------CSCBCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHcC--------------------------CCCcCHHHHHHHHHHHh
Confidence 1367888899998876664321 23588888888877654
No 79
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.66 E-value=6.5e-16 Score=161.52 Aligned_cols=195 Identities=22% Similarity=0.287 Sum_probs=132.7
Q ss_pred cccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhhh-hccch
Q 004267 207 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS-KLAGE 285 (764)
Q Consensus 207 ~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~-~~~g~ 285 (764)
...+.|.++.++.+...... ....+...+..++.++||+||||||||++|+++|..++.+++.+++++... ...+.
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~---l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~ 108 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGEL---LVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETA 108 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHH---HHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHH
T ss_pred hcCCCCccHHHHHHHHHHHH---HHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHH
Confidence 34566777766666543111 012233334567789999999999999999999999999999998875322 11122
Q ss_pred hHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhccc-CCCeEEEEEecCCCCCCCh-hhhc
Q 004267 286 SESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK-SRAHVIVIGATNRPNSIDP-ALRR 363 (764)
Q Consensus 286 ~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-~~~~v~vI~atn~~~~ld~-al~r 363 (764)
....++.+|..+....+++|||||+|.++..+..+. .....+...|...++... ....+++|++||.++.+++ .+++
T Consensus 109 ~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~ 187 (272)
T 1d2n_A 109 KCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGP-RFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLN 187 (272)
T ss_dssp HHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTT-BCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCCh-hHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhc
Confidence 335678899998888899999999999976654221 223456667777777654 2457889999999887776 4444
Q ss_pred cCCcceEEEecCCChHHHHHHHHHHhcCCCCCCchhhhHHhhhcCCC
Q 004267 364 FGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGY 410 (764)
Q Consensus 364 ~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~ 410 (764)
||...+.+|.+.. |.++.........+ .+..+..++..+.||
T Consensus 188 --rf~~~i~~p~l~~--r~~i~~i~~~~~~~-~~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 188 --AFSTTIHVPNIAT--GEQLLEALELLGNF-KDKERTTIAQQVKGK 229 (272)
T ss_dssp --TSSEEEECCCEEE--HHHHHHHHHHHTCS-CHHHHHHHHHHHTTS
T ss_pred --ccceEEcCCCccH--HHHHHHHHHhcCCC-CHHHHHHHHHHhcCC
Confidence 8988887765554 44444433332223 455688899999887
No 80
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.66 E-value=3.2e-16 Score=168.22 Aligned_cols=170 Identities=18% Similarity=0.248 Sum_probs=123.7
Q ss_pred CCcceeeeCCCCCChhHHHHHHHHHh---CCeeEEEecccchhcccCcchHHHHHHHHHHhhCCCeEEEEecccchhhcc
Q 004267 514 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQR 590 (764)
Q Consensus 514 ~~~gill~GppGtGKT~lak~lA~~~---~~~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r 590 (764)
.+.+++|+||||||||+||+++++.+ +.+++.+++.++...+.+.........|..... .+++|||||++.+...+
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~vL~iDEi~~l~~~~ 114 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMYK-SVDLLLLDDVQFLSGKE 114 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHHH-TCSEEEEECGGGGTTCH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHhc-CCCEEEEcCcccccCCh
Confidence 34679999999999999999999988 889999999888766555443333334444433 36899999999986421
Q ss_pred CCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCC---CCCccCCCCCccc--eEEeecCCCHHHHHHHHHHHh
Q 004267 591 GSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPD---IIDPALLRPGRLD--QLIYIPLPDEDSRHQIFKACL 665 (764)
Q Consensus 591 ~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~---~ld~allrpgRf~--~~i~~~~p~~~~r~~Il~~~~ 665 (764)
.....++..++.....+..+|+++++.++ .+++++.+ ||+ ..+.+++ +.+++.+|++.++
T Consensus 115 ------------~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~ 179 (324)
T 1l8q_A 115 ------------RTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKL 179 (324)
T ss_dssp ------------HHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHH
Confidence 11222333333222334567788888776 68899988 997 7899999 9999999999998
Q ss_pred ccCCCC-CcccHHHHHHHCCCCCHHHHHHHHHHHHHH
Q 004267 666 RKSPVS-KDVDLRALAKYTQGFSGADITEICQRACKY 701 (764)
Q Consensus 666 ~~~~~~-~~~~l~~la~~~~g~sg~di~~~~~~a~~~ 701 (764)
+..++. ++..++.++..+ .+.+++.+++..+...
T Consensus 180 ~~~~~~l~~~~l~~l~~~~--g~~r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 180 KEFNLELRKEVIDYLLENT--KNVREIEGKIKLIKLK 214 (324)
T ss_dssp HHTTCCCCHHHHHHHHHHC--SSHHHHHHHHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHhC--CCHHHHHHHHHHHHHc
Confidence 755443 223477888888 5889999998887765
No 81
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.66 E-value=2e-16 Score=181.03 Aligned_cols=167 Identities=25% Similarity=0.378 Sum_probs=118.8
Q ss_pred CCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhhh----
Q 004267 205 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS---- 280 (764)
Q Consensus 205 ~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~---- 280 (764)
.-.+++.|+++.+..+.+.+.+.... +.+ ++..++|+||||||||||+++|++.++.++..+++..+..
T Consensus 78 ~l~~di~G~~~vk~~i~~~~~l~~~~------~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~ 150 (543)
T 3m6a_A 78 LLDEEHHGLEKVKERILEYLAVQKLT------KSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEI 150 (543)
T ss_dssp THHHHCSSCHHHHHHHHHHHHHHHHS------SSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-------
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhc------ccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhh
Confidence 34567999999999998776543211 122 5778999999999999999999999999999888765432
Q ss_pred -----hccchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCC-------------
Q 004267 281 -----KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSR------------- 342 (764)
Q Consensus 281 -----~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~------------- 342 (764)
.+.|.....+...|..+....| ++||||+|.+.+.... ...+.|+..|+.....
T Consensus 151 ~g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~~-------~~~~~LL~~ld~~~~~~~~~~~~~~~~~~ 222 (543)
T 3m6a_A 151 RGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFRG-------DPSSAMLEVLDPEQNSSFSDHYIEETFDL 222 (543)
T ss_dssp -------------CHHHHHHTTCSSSE-EEEEEESSSCC----------------CCGGGTCTTTTTBCCCSSSCCCCBC
T ss_pred hhHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhcc-------CHHHHHHHHHhhhhcceeecccCCeeecc
Confidence 4556666667777777765665 9999999999865421 1335566666543211
Q ss_pred CeEEEEEecCCCCCCChhhhccCCcceEEEecCCChHHHHHHHHHHh
Q 004267 343 AHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHT 389 (764)
Q Consensus 343 ~~v~vI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~ 389 (764)
.++++|+|||+++.++++|++ ||. .|.++.|+.+++.+|++.++
T Consensus 223 ~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 223 SKVLFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp SSCEEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTH
T ss_pred cceEEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHH
Confidence 468999999999999999998 894 68999999999999998765
No 82
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.66 E-value=9.8e-17 Score=170.98 Aligned_cols=208 Identities=21% Similarity=0.333 Sum_probs=143.2
Q ss_pred cccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHh---CCeeEEEecccchh----
Q 004267 481 EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLT---- 553 (764)
Q Consensus 481 ~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~---~~~~i~v~~~~l~~---- 553 (764)
.++.|++.+++.+...+...... +.. ..++...++|+||||||||++|+++|..+ +.+++.++++.+..
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~---~~~-~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~ 92 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAG---LKD-PNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 92 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHT---CSC-TTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcC---CCC-CCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccH
Confidence 45678888877776655421100 000 11233469999999999999999999987 55699998876532
Q ss_pred -cccCcchH-----HHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCC---------CC
Q 004267 554 -MWFGESEA-----NVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS---------AK 618 (764)
Q Consensus 554 -~~~g~se~-----~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~---------~~ 618 (764)
.++|.... ....+.........+++||||+|.+. ..+.+.|++.|+... ..
T Consensus 93 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~--------------~~~~~~Ll~~le~~~~~~~~~~~~~~ 158 (311)
T 4fcw_A 93 SRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAH--------------PDVFNILLQMLDDGRLTDSHGRTVDF 158 (311)
T ss_dssp HHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSC--------------HHHHHHHHHHHHHSEEECTTSCEEEC
T ss_pred HHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcC--------------HHHHHHHHHHHhcCEEEcCCCCEEEC
Confidence 22221110 00233344445566899999999863 346677777776432 12
Q ss_pred CcEEEEecCCC--------------------------CCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccC----
Q 004267 619 KTVFIIGATNR--------------------------PDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKS---- 668 (764)
Q Consensus 619 ~~v~vi~aTn~--------------------------~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~---- 668 (764)
.++++|+|||. ...++|+++. ||+..+.|++|+.+++..|++.++++.
T Consensus 159 ~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~ 236 (311)
T 4fcw_A 159 RNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSYLRARL 236 (311)
T ss_dssp TTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHHHHHHH
T ss_pred CCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHH
Confidence 47889999998 4568888887 999999999999999999999987552
Q ss_pred ---CCC---CcccHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHHHHH
Q 004267 669 ---PVS---KDVDLRALAKYTQ--GFSGADITEICQRACKYAIRENIE 708 (764)
Q Consensus 669 ---~~~---~~~~l~~la~~~~--g~sg~di~~~~~~a~~~a~~~~~~ 708 (764)
... .+..+..|++... .++.++|+++++.+...++.+.+.
T Consensus 237 ~~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i~ 284 (311)
T 4fcw_A 237 AEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKIL 284 (311)
T ss_dssp HTTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHHHHHH
T ss_pred HhCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHHHHHHH
Confidence 111 2233566777654 678999999999999988877654
No 83
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.65 E-value=2.2e-16 Score=166.96 Aligned_cols=201 Identities=13% Similarity=0.099 Sum_probs=139.9
Q ss_pred CCCcceeeeCCCCCChhHHHHHHHHHh----------CCeeEEEecccchhc----------c------cCcchHHHHHH
Q 004267 513 SPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISVKGPELLTM----------W------FGESEANVREI 566 (764)
Q Consensus 513 ~~~~gill~GppGtGKT~lak~lA~~~----------~~~~i~v~~~~l~~~----------~------~g~se~~i~~~ 566 (764)
..+.+++|+||||||||+++++++.++ ...++.++|..+.+. . .|.+...++.+
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~ 122 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFY 122 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Confidence 356779999999999999999999987 457889998765432 1 23456778899
Q ss_pred HHHH--hhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCCC----CCccCCCC
Q 004267 567 FDKA--RQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDI----IDPALLRP 640 (764)
Q Consensus 567 f~~a--~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~----ld~allrp 640 (764)
|+.. ....++|+|+||+|.+.. .+++..|+.... ....+++||+++|..+. |++++.+
T Consensus 123 f~~~~~~~~~~~ii~lDE~d~l~~-------------q~~L~~l~~~~~--~~~s~~~vI~i~n~~d~~~~~L~~~v~S- 186 (318)
T 3te6_A 123 ITNVPKAKKRKTLILIQNPENLLS-------------EKILQYFEKWIS--SKNSKLSIICVGGHNVTIREQINIMPSL- 186 (318)
T ss_dssp HHHSCGGGSCEEEEEEECCSSSCC-------------THHHHHHHHHHH--CSSCCEEEEEECCSSCCCHHHHHTCHHH-
T ss_pred HHHhhhccCCceEEEEecHHHhhc-------------chHHHHHHhccc--ccCCcEEEEEEecCcccchhhcchhhhc-
Confidence 9875 456689999999999861 245666665432 14567899999998875 4556665
Q ss_pred Cccc-eEEeecCCCHHHHHHHHHHHhccCCC------------------------------------CCcccHHHHHHHC
Q 004267 641 GRLD-QLIYIPLPDEDSRHQIFKACLRKSPV------------------------------------SKDVDLRALAKYT 683 (764)
Q Consensus 641 gRf~-~~i~~~~p~~~~r~~Il~~~~~~~~~------------------------------------~~~~~l~~la~~~ 683 (764)
||. ..|.|++++.++..+|++..++...- -.+.-++.+|+..
T Consensus 187 -R~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ai~~~A~~v 265 (318)
T 3te6_A 187 -KAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKINNKITQLIAKNV 265 (318)
T ss_dssp -HTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECEECCHHHHHHHHHHH
T ss_pred -cCCceEEEeCCCCHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccCHHHHHHHHHHH
Confidence 887 68999999999999999988865311 0122255555531
Q ss_pred --CCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCCCccccccccccccccccHHHHHHHHHh
Q 004267 684 --QGFSGADITEICQRACKYAIRENIEKDIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKF 747 (764)
Q Consensus 684 --~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~ 747 (764)
..-..+-.-++|+.|+..|-++.+.+... .+....||.+++++++.+
T Consensus 266 A~~~GD~R~Al~ilr~A~~~ae~e~~~k~~~-----------------~~~~~~i~~~~~~~~~~~ 314 (318)
T 3te6_A 266 ANVSGSTEKAFKICEAAVEISKKDFVRKGGL-----------------QKGKLVVSQEMVPRYFSE 314 (318)
T ss_dssp HHHHCSHHHHHHHHHHHHHHHHHHHHHHTTE-----------------ETTEECCSEECCTHHHHH
T ss_pred HhhCChHHHHHHHHHHHHHHHHHHHHhccCC-----------------CCCcEEeeHHHHHHHHHH
Confidence 12245555678999999998887654210 122346777776666654
No 84
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.65 E-value=2e-16 Score=176.54 Aligned_cols=174 Identities=16% Similarity=0.239 Sum_probs=125.8
Q ss_pred CcceeeeCCCCCChhHHHHHHHHHh-----CCeeEEEecccchhcccCcchHHHHHHHHHHhhCCCeEEEEecccchhhc
Q 004267 515 SKGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQ 589 (764)
Q Consensus 515 ~~gill~GppGtGKT~lak~lA~~~-----~~~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~ 589 (764)
+.+++|+||||||||+||+++++.+ +.+++.+++.++...+.+.........|.......+++|||||++.+.+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~ 209 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGK 209 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCC
Confidence 4579999999999999999999987 78899999988766554433332233455444446789999999998642
Q ss_pred cCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCCC---CCccCCCCCccc--eEEeecCCCHHHHHHHHHHH
Q 004267 590 RGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDI---IDPALLRPGRLD--QLIYIPLPDEDSRHQIFKAC 664 (764)
Q Consensus 590 r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~---ld~allrpgRf~--~~i~~~~p~~~~r~~Il~~~ 664 (764)
+ .....|+..|+.+...+..+||++.+.+.. +++++++ ||. .++.+++|+.++|.+|++..
T Consensus 210 ~------------~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~ 275 (440)
T 2z4s_A 210 T------------GVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKM 275 (440)
T ss_dssp H------------HHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHH
T ss_pred h------------HHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHH
Confidence 1 122333333333223445666666666665 7889988 887 88999999999999999998
Q ss_pred hccCCCC-CcccHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q 004267 665 LRKSPVS-KDVDLRALAKYTQGFSGADITEICQRACKYAI 703 (764)
Q Consensus 665 ~~~~~~~-~~~~l~~la~~~~g~sg~di~~~~~~a~~~a~ 703 (764)
++..++. ++..+..++..+. .+.+++.++++.+...|.
T Consensus 276 ~~~~~~~i~~e~l~~la~~~~-gn~R~l~~~L~~~~~~a~ 314 (440)
T 2z4s_A 276 LEIEHGELPEEVLNFVAENVD-DNLRRLRGAIIKLLVYKE 314 (440)
T ss_dssp HHHHTCCCCTTHHHHHHHHCC-SCHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCCHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHH
Confidence 8654432 2223778888886 499999999999887765
No 85
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.65 E-value=4.5e-16 Score=168.69 Aligned_cols=219 Identities=20% Similarity=0.267 Sum_probs=133.6
Q ss_pred ccCccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEE----Eeccc
Q 004267 475 VPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFIS----VKGPE 550 (764)
Q Consensus 475 ~~~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~----v~~~~ 550 (764)
.+...|+++.|.+.+++.+...... ....++||+||||||||++|++++..++..... +++..
T Consensus 18 ~~~~~f~~i~G~~~~~~~l~~~~~~-------------~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~ 84 (350)
T 1g8p_A 18 RPVFPFSAIVGQEDMKLALLLTAVD-------------PGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPN 84 (350)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHC-------------GGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSS
T ss_pred CCCCCchhccChHHHHHHHHHHhhC-------------CCCceEEEECCCCccHHHHHHHHHHhCccccccccccccccc
Confidence 3567899999999877654322111 123459999999999999999999987631100 01100
Q ss_pred ---------------------chhcccCcchHH------HHHHHHHHh---------hCCCeEEEEecccchhhccCCCC
Q 004267 551 ---------------------LLTMWFGESEAN------VREIFDKAR---------QSAPCVLFFDELDSIATQRGSSV 594 (764)
Q Consensus 551 ---------------------l~~~~~g~se~~------i~~~f~~a~---------~~~p~iifiDEid~l~~~r~~~~ 594 (764)
++....|.++.. +...|..+. ...++++|||||+.+..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~------ 158 (350)
T 1g8p_A 85 VEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLED------ 158 (350)
T ss_dssp GGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCH------
T ss_pred cccccchhhhhccccccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCH------
Confidence 000001111111 122232221 11257999999998743
Q ss_pred CCCCcchHHHHHHHHHhhcCC----C-------CCCcEEEEecCCCCC-CCCccCCCCCccceEEeecCC-CHHHHHHHH
Q 004267 595 GDAGGAADRVLNQLLTEMDGM----S-------AKKTVFIIGATNRPD-IIDPALLRPGRLDQLIYIPLP-DEDSRHQIF 661 (764)
Q Consensus 595 ~~~~~~~~~~~~~lL~~ld~~----~-------~~~~v~vi~aTn~~~-~ld~allrpgRf~~~i~~~~p-~~~~r~~Il 661 (764)
...+.|+..|+.. . ...++++|+|||..+ .+++++++ ||+..+++++| +.+++.+|+
T Consensus 159 --------~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~il 228 (350)
T 1g8p_A 159 --------HIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEVI 228 (350)
T ss_dssp --------HHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHHH
T ss_pred --------HHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHHHH
Confidence 3445555555431 0 013789999999755 89999999 99999999998 678888888
Q ss_pred HHHhc-------------------------------cCCCCCcccHHHHHHHCCC---CCHHHHHHHHHHHHHHHHHHHH
Q 004267 662 KACLR-------------------------------KSPVSKDVDLRALAKYTQG---FSGADITEICQRACKYAIRENI 707 (764)
Q Consensus 662 ~~~~~-------------------------------~~~~~~~~~l~~la~~~~g---~sg~di~~~~~~a~~~a~~~~~ 707 (764)
+..++ ...++ +.-+..+++...+ -+.+.+.++++.|...|..+.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls-~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~- 306 (350)
T 1g8p_A 229 RRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAP-NTALYDCAALCIALGSDGLRGELTLLRSARALAALEG- 306 (350)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCC-HHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcC-
Confidence 76321 11222 2224444444322 256888888887776665432
Q ss_pred HHhHHHHhhhcCCCccccccccccccccccHHHHHHHHHhcC
Q 004267 708 EKDIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFAR 749 (764)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~ 749 (764)
...|+.+|+.+|+..+-
T Consensus 307 -------------------------~~~v~~~~v~~a~~~~l 323 (350)
T 1g8p_A 307 -------------------------ATAVGRDHLKRVATMAL 323 (350)
T ss_dssp -------------------------CSBCCHHHHHHHHHHHH
T ss_pred -------------------------CCcCCHHHHHHHHHHHH
Confidence 23589999999888653
No 86
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.65 E-value=2.4e-16 Score=175.74 Aligned_cols=209 Identities=21% Similarity=0.332 Sum_probs=145.5
Q ss_pred ccccccccchhhh---hcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccchhc
Q 004267 478 VSWEDIGGLENVK---RELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM 554 (764)
Q Consensus 478 v~~~~i~g~~~~k---~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~~~ 554 (764)
.+|+++.|++++. +.|...+.. + ...+++|+||||||||++|+++|+.++.+|+.+++..
T Consensus 23 ~~l~~ivGq~~~~~~~~~L~~~i~~-----------~--~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~---- 85 (447)
T 3pvs_A 23 ENLAQYIGQQHLLAAGKPLPRAIEA-----------G--HLHSMILWGPPGTGKTTLAEVIARYANADVERISAVT---- 85 (447)
T ss_dssp CSTTTCCSCHHHHSTTSHHHHHHHH-----------T--CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTT----
T ss_pred CCHHHhCCcHHHHhchHHHHHHHHc-----------C--CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEecc----
Confidence 4678999999887 344333321 1 1256999999999999999999999999999998643
Q ss_pred ccCcchHHHHHHHHHHhh----CCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecC--C
Q 004267 555 WFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGAT--N 628 (764)
Q Consensus 555 ~~g~se~~i~~~f~~a~~----~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aT--n 628 (764)
.....++.+|..+.. ..+++||||||+.+... ..+.||..|+. ..+++|++| |
T Consensus 86 ---~~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~--------------~q~~LL~~le~----~~v~lI~att~n 144 (447)
T 3pvs_A 86 ---SGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKS--------------QQDAFLPHIED----GTITFIGATTEN 144 (447)
T ss_dssp ---CCHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC--------------------CCHHHHHT----TSCEEEEEESSC
T ss_pred ---CCHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHH--------------HHHHHHHHHhc----CceEEEecCCCC
Confidence 345567777777653 46789999999997432 23446666664 345666655 5
Q ss_pred CCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccC-------CC-CCcccHHHHHHHCCCCCHHHHHHHHHHHHH
Q 004267 629 RPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKS-------PV-SKDVDLRALAKYTQGFSGADITEICQRACK 700 (764)
Q Consensus 629 ~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~-------~~-~~~~~l~~la~~~~g~sg~di~~~~~~a~~ 700 (764)
....+++++++ |+. ++.|++|+.+++..+++..+.+. .+ -++..++.+++.+.| +.+++.++++.|+.
T Consensus 145 ~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G-d~R~lln~Le~a~~ 220 (447)
T 3pvs_A 145 PSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG-DARRALNTLEMMAD 220 (447)
T ss_dssp GGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS-CHHHHHHHHHHHHH
T ss_pred cccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC-CHHHHHHHHHHHHH
Confidence 55689999998 887 78899999999999999998752 11 123346778888654 78888888887765
Q ss_pred HHHHHHHHHhHHHHhhhcCCCccccccccccccccccHHHHHHHHHhcCCCC
Q 004267 701 YAIRENIEKDIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRSI 752 (764)
Q Consensus 701 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~s~ 752 (764)
.+..+ ......||.+|+++++.......
T Consensus 221 ~a~~~------------------------~~~~~~It~e~v~~~l~~~~~~~ 248 (447)
T 3pvs_A 221 MAEVD------------------------DSGKRVLKPELLTEIAGERSARF 248 (447)
T ss_dssp HSCBC------------------------TTSCEECCHHHHHHHHTCCCCC-
T ss_pred hcccc------------------------cCCCCccCHHHHHHHHhhhhhcc
Confidence 43210 00123688888888887765544
No 87
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=99.64 E-value=1.3e-16 Score=200.50 Aligned_cols=387 Identities=16% Similarity=0.250 Sum_probs=198.8
Q ss_pred ccccChhhhhhhC---CCCCceEEEECCCCCCHHHHHHHHHHHh---CCeEEEEechhhhh----hccch--------hH
Q 004267 226 LPLRHPQLFKSIG---VKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMS----KLAGE--------SE 287 (764)
Q Consensus 226 ~~l~~~~~~~~l~---i~~~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~----~~~g~--------~~ 287 (764)
+|...+++..-++ +.++..++|+||||+|||+|+..+|... +..++.++...-.. ...|. ..
T Consensus 364 I~TG~~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~s~~~~~a~~lGvd~~~L~I~~~ 443 (2050)
T 3cmu_A 364 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQP 443 (2050)
T ss_dssp ECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECC
T ss_pred eeCCCHHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCCCHHHHHHHHcCCCHHHeEEeCC
Confidence 3445566776665 8999999999999999999999998765 35667776543221 11110 00
Q ss_pred HHHHHHHHHH----HhcCCeEEEEccccccCCCCC------CCchHHHHHHHHHHHHHhhcccCCCeEEEEEecC---CC
Q 004267 288 SNLRKAFEEA----EKNAPSIIFIDEIDSIAPKRE------KTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATN---RP 354 (764)
Q Consensus 288 ~~l~~vf~~a----~~~~p~il~iDEid~l~~~~~------~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn---~~ 354 (764)
..+..+++.+ ....|.++|||.+..+.++.. ........+.+.+.+..|..+....++.||.+.+ .+
T Consensus 444 ~~~e~il~~~~~lv~~~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i~VIlinQl~~~v 523 (2050)
T 3cmu_A 444 DTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKI 523 (2050)
T ss_dssp SSHHHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECT
T ss_pred CCHHHHHHHHHHHHHhcCCcEEEECCHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCeEEEEeeccccc
Confidence 1122233333 357899999999999986221 1101122333333333333222233344443322 22
Q ss_pred CCC--Ch-------hhhccCCcceEEE--------------------------ecCCChHHHHHHHHHHhcCCCCCCchh
Q 004267 355 NSI--DP-------ALRRFGRFDREID--------------------------IGVPDEVGRLEVLRIHTKNMKLSDDVD 399 (764)
Q Consensus 355 ~~l--d~-------al~r~~rf~~~i~--------------------------i~~p~~~~R~~il~~~~~~~~l~~~~~ 399 (764)
+.. +| ++.. -.+..+. +.+|......+|+ +.. .+....+
T Consensus 524 g~~~g~p~~psGg~ale~--~ADv~l~L~R~~~~~~g~~~~g~~~~v~V~KnR~gp~g~~~~f~I~--~~~--Gi~~~~~ 597 (2050)
T 3cmu_A 524 GVMFGNPETTTGGNALKF--YASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQIL--YGE--GINFYGE 597 (2050)
T ss_dssp TCCSSCCEECSSHHHHHH--HEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESSSCSCCEEEEEEE--TTT--EECHHHH
T ss_pred ccccCCCcCCCCcchhhh--hCCEEEEEEecccccCCccccCcEEEEEEEecCCCCCCceEEEEEE--eCC--Ccccccc
Confidence 222 11 0100 0001111 1111111111100 000 0000001
Q ss_pred hhHHh---------hhcCCCchHHHHHHHHHHHHHHHHhhccccccccchhhHHHhhhhcccchhhhccccccCCCCcce
Q 004267 400 LERIA---------KDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVSNEHFQTALGTSNPSALRE 470 (764)
Q Consensus 400 l~~la---------~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~ps~~~~ 470 (764)
+-.++ ...++|.+.++.+ +++++...+++..+. .+.+.......+.++ .++....|+.+++
T Consensus 598 ~ldla~~~~ii~k~g~w~~~~~~~l~q-g~e~~~~~l~~~p~~----~~ei~~~i~~~~~Vt-----~a~~~~~ps~L~e 667 (2050)
T 3cmu_A 598 LVDLGVKEKLIEKAGAWYSYKGEKIGQ-GKANATAWLKDNPET----AKEIEKKVRELLLSN-----PNSTTGSTGSMGH 667 (2050)
T ss_dssp HHHHHHHTTSSEEETTEEEETTEEEEE-SHHHHHHHHTTCHHH----HHHHHHHHHHHHCSS-----CCC----------
T ss_pred chhhhhhcChhhhcCceecccCCchHh-hHHHHHHHHHhChHH----HHHHHHHHHHhcccc-----hhcccCCHHHHHh
Confidence 11111 1234566666654 677777777654221 123333333444444 5677788999999
Q ss_pred eeeeccCccccccccchhhhhcc-----------------cceeeccCCChhhhhhc---cCCCCcceeeeCCCCCChhH
Q 004267 471 TVVEVPNVSWEDIGGLENVKREL-----------------QETVQYPVEHPEKFEKF---GMSPSKGVLFYGPPGCGKTL 530 (764)
Q Consensus 471 ~~~~~~~v~~~~i~g~~~~k~~l-----------------~~~v~~~~~~~~~~~~~---~~~~~~gill~GppGtGKT~ 530 (764)
...+.|+++|++-..+..+.+.+ .+...++...++.-+-+ |+.+...++|+|+||+|||+
T Consensus 668 ~~~~~~~v~~~~~~~i~~a~~~i~~~f~~~~~~~l~~~~~~~~~~i~TG~~eLD~llggGGl~~G~lilIaG~PG~GKTt 747 (2050)
T 3cmu_A 668 TTGAMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTT 747 (2050)
T ss_dssp ------CCSTTHHHHHHHHHHHHHHHHCTTSEEEGGGCTTTSCCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHH
T ss_pred hhccccCCcHHHHHHHHHHHHHHHHhhccccccchhhhhhcccceeecCChHHHHHhccCCcCCCcEEEEEcCCCCCHHH
Confidence 99999999997522222111111 23334455555544444 57888889999999999999
Q ss_pred HHHHHHHHh---CCeeEEEecccchhcc----cC--------cchHHHHHHHHHHhh----CCCeEEEEecccchhh-cc
Q 004267 531 LAKAIANEC---QANFISVKGPELLTMW----FG--------ESEANVREIFDKARQ----SAPCVLFFDELDSIAT-QR 590 (764)
Q Consensus 531 lak~lA~~~---~~~~i~v~~~~l~~~~----~g--------~se~~i~~~f~~a~~----~~p~iifiDEid~l~~-~r 590 (764)
||..+|..+ +.+++.+++.+....+ +| .++.++..+++.+++ ..|+++|+|.+..+.. .+
T Consensus 748 LalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~~r~l~~~~~~~LVIIDsLq~i~~~~~ 827 (2050)
T 3cmu_A 748 LTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAE 827 (2050)
T ss_dssp HHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCCHHH
T ss_pred HHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHHHHHHhhccCCCEEEEcchhhhccccc
Confidence 999999875 3468888887655443 33 234456777777665 7899999999999875 22
Q ss_pred --CCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCC
Q 004267 591 --GSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATN 628 (764)
Q Consensus 591 --~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn 628 (764)
+...+-..+...|.+++++..|..+....++.||++..
T Consensus 828 ~~~~~Gs~~q~La~Reis~ilr~Lk~lAke~~v~VI~l~Q 867 (2050)
T 3cmu_A 828 IEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 867 (2050)
T ss_dssp HHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred ccCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCEEEEecc
Confidence 11111111344677899999988877667777777664
No 88
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.64 E-value=8.4e-16 Score=183.90 Aligned_cols=225 Identities=20% Similarity=0.235 Sum_probs=158.6
Q ss_pred ccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHh----------CCeeEEEe
Q 004267 478 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISVK 547 (764)
Q Consensus 478 v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~----------~~~~i~v~ 547 (764)
-.|+++.|.+...+.+.+.+. .....+++|+||||||||++|+++|..+ +..++.++
T Consensus 183 ~~~d~~iGr~~~i~~l~~~l~-------------~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~ 249 (758)
T 1r6b_X 183 GGIDPLIGREKELERAIQVLC-------------RRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 249 (758)
T ss_dssp TCSCCCCSCHHHHHHHHHHHT-------------SSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECC
T ss_pred CCCCCccCCHHHHHHHHHHHh-------------ccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEc
Confidence 357788888877666554332 1345679999999999999999999976 66788888
Q ss_pred cccch--hcccCcchHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEe
Q 004267 548 GPELL--TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIG 625 (764)
Q Consensus 548 ~~~l~--~~~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~ 625 (764)
...+. .+|.|+.+..++.+|+.+....++|+||||++.+.+.++.. .....+.+.|...+ ....+.+|+
T Consensus 250 ~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~-----~~~~~~~~~L~~~l----~~~~~~~I~ 320 (758)
T 1r6b_X 250 IGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAAS-----GGQVDAANLIKPLL----SSGKIRVIG 320 (758)
T ss_dssp CC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSS-----SCHHHHHHHHSSCS----SSCCCEEEE
T ss_pred HHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCC-----cchHHHHHHHHHHH----hCCCeEEEE
Confidence 77776 57889999999999999998888999999999998764321 12233444443333 345778899
Q ss_pred cCCCCC-----CCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccC----CCC-CcccHHHHHHHCC-----CCCHHH
Q 004267 626 ATNRPD-----IIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKS----PVS-KDVDLRALAKYTQ-----GFSGAD 690 (764)
Q Consensus 626 aTn~~~-----~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~----~~~-~~~~l~~la~~~~-----g~sg~d 690 (764)
+||.++ .+|+++.| ||+ .+.|+.|+.+++.+|++.+.... .+. .+..+..++..+. .+.+..
T Consensus 321 at~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~ 397 (758)
T 1r6b_X 321 STTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDK 397 (758)
T ss_dssp EECHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHH
T ss_pred EeCchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchH
Confidence 998753 57899999 998 79999999999999999877542 221 2233555555543 356667
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhhhcCCCccccccccccccccccHHHHHHHHHhcC
Q 004267 691 ITEICQRACKYAIRENIEKDIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFAR 749 (764)
Q Consensus 691 i~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~ 749 (764)
+..++.+|+..+.... . ......|+.+||.+++..+.
T Consensus 398 ~i~lld~a~~~~~~~~-------------~---------~~~~~~v~~~di~~~~~~~~ 434 (758)
T 1r6b_X 398 AIDVIDEAGARARLMP-------------V---------SKRKKTVNVADIESVVARIA 434 (758)
T ss_dssp HHHHHHHHHHHHHHSS-------------S---------CCCCCSCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhccc-------------c---------cccCCccCHHHHHHHHHHhc
Confidence 8888888765432210 0 01134689999999988764
No 89
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.63 E-value=3.4e-16 Score=176.22 Aligned_cols=184 Identities=24% Similarity=0.333 Sum_probs=129.2
Q ss_pred ccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHh----------CCeeEEEe
Q 004267 478 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISVK 547 (764)
Q Consensus 478 v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~----------~~~~i~v~ 547 (764)
-.++++.|.+...+.+.+.+.. ....++||+||||||||++|+++|..+ +.+|+.++
T Consensus 177 ~~ld~iiGr~~~i~~l~~~l~r-------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 243 (468)
T 3pxg_A 177 DSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLD 243 (468)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-
T ss_pred CCCCCccCcHHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 3567888888877766554321 234579999999999999999999986 77888888
Q ss_pred cccchhcccCcchHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecC
Q 004267 548 GPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGAT 627 (764)
Q Consensus 548 ~~~l~~~~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aT 627 (764)
++ ++|.|+.+..++.+|..+....++|+|+| +. ....+.|+..|+ .+.+.+|+||
T Consensus 244 ~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD---------~~---------~~a~~~L~~~L~----~g~v~vI~at 298 (468)
T 3pxg_A 244 MG---TKYRGEFEDRLKKVMDEIRQAGNIILFID---------AA---------IDASNILKPSLA----RGELQCIGAT 298 (468)
T ss_dssp ------------CTTHHHHHHHHHTCCCCEEEEC---------C-----------------CCCTT----SSSCEEEEEC
T ss_pred CC---ccccchHHHHHHHHHHHHHhcCCeEEEEe---------Cc---------hhHHHHHHHhhc----CCCEEEEecC
Confidence 77 77899999999999999999889999999 10 112344555554 4578999999
Q ss_pred CCCC-----CCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccC----CCC-CcccHHHHHHHCCC-----CCHHHHH
Q 004267 628 NRPD-----IIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKS----PVS-KDVDLRALAKYTQG-----FSGADIT 692 (764)
Q Consensus 628 n~~~-----~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~----~~~-~~~~l~~la~~~~g-----~sg~di~ 692 (764)
|.++ .+|++++| ||. .|.|++|+.+++..|++.++.+. .+. .+..+..++..+.+ +.+....
T Consensus 299 ~~~e~~~~~~~~~al~~--Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai 375 (468)
T 3pxg_A 299 TLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAI 375 (468)
T ss_dssp CTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHH
T ss_pred CHHHHHHHhhcCHHHHH--hCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHH
Confidence 9988 69999999 998 59999999999999999888663 222 23345666665443 3455777
Q ss_pred HHHHHHHHHH
Q 004267 693 EICQRACKYA 702 (764)
Q Consensus 693 ~~~~~a~~~a 702 (764)
.++.+|+..+
T Consensus 376 ~ll~~a~~~~ 385 (468)
T 3pxg_A 376 DLIDEAGSKV 385 (468)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888887654
No 90
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.63 E-value=2.8e-15 Score=159.38 Aligned_cols=215 Identities=23% Similarity=0.341 Sum_probs=145.9
Q ss_pred ccccChHHHHHHHHHHHHccccChhhhhhhC-CCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhhh-hccch
Q 004267 208 DDVGGVRKQMAQIRELVELPLRHPQLFKSIG-VKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS-KLAGE 285 (764)
Q Consensus 208 ~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~-i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~-~~~g~ 285 (764)
+++.|.+++++.+...+..++.++.+...+. -..+.+++|+||||||||++|++++..++.+++.+++.++.. .+.|.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 3589999999999888865443332221111 134678999999999999999999999999999999988765 44443
Q ss_pred -hHHHHHHHHHHH-----HhcCCeEEEEccccccCCCCCCCchH-HHHHHHHHHHHHhhccc--------CCCeEEEEEe
Q 004267 286 -SESNLRKAFEEA-----EKNAPSIIFIDEIDSIAPKREKTHGE-VERRIVSQLLTLMDGLK--------SRAHVIVIGA 350 (764)
Q Consensus 286 -~~~~l~~vf~~a-----~~~~p~il~iDEid~l~~~~~~~~~~-~~~~v~~~Ll~~ld~~~--------~~~~v~vI~a 350 (764)
....++.++..+ ....+++|||||+|.+.+.......+ ....+...|+..+++.. ....+++|++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~ 174 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIAS 174 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEE
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEc
Confidence 234466665532 11236799999999998776433222 33345677888887632 2235677777
Q ss_pred ----cCCCCCCChhhhccCCcceEEEecCCChHHHHHHHHHHh-------------cCCC-CCCchhhhHHhhhcC----
Q 004267 351 ----TNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHT-------------KNMK-LSDDVDLERIAKDTH---- 408 (764)
Q Consensus 351 ----tn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~-------------~~~~-l~~~~~l~~la~~t~---- 408 (764)
++.+..+++++.+ ||+..+.++.|+.+++.+|++... .... ..++..++.++..+.
T Consensus 175 ~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~ 252 (310)
T 1ofh_A 175 GAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNE 252 (310)
T ss_dssp ECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHH
T ss_pred CCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhcc
Confidence 5577889999997 999889999999999999987311 1111 112334566666552
Q ss_pred ---CCchHHHHHHHHHHHH
Q 004267 409 ---GYVGADLAALCTEAAL 424 (764)
Q Consensus 409 ---g~~~~dl~~l~~~a~~ 424 (764)
+...+.+..++..+..
T Consensus 253 ~~~~g~~R~l~~~l~~~~~ 271 (310)
T 1ofh_A 253 KTENIGARRLHTVMERLMD 271 (310)
T ss_dssp HSCCCTTHHHHHHHHHHSH
T ss_pred cccccCcHHHHHHHHHHHH
Confidence 4556667666666543
No 91
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.63 E-value=4e-16 Score=177.98 Aligned_cols=200 Identities=18% Similarity=0.247 Sum_probs=130.4
Q ss_pred Cccccccccchhhhhcccceeec-cCCChhhhhhccCC---CCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccch
Q 004267 477 NVSWEDIGGLENVKRELQETVQY-PVEHPEKFEKFGMS---PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 552 (764)
Q Consensus 477 ~v~~~~i~g~~~~k~~l~~~v~~-~~~~~~~~~~~~~~---~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~ 552 (764)
..+|++++|.+.+++.|.+.+.. ....+..+...|.. +++++||+||||||||++|+++|.+++.+++.++++++.
T Consensus 35 P~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~ 114 (516)
T 1sxj_A 35 PTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVR 114 (516)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCC
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 34689999999999888877653 21122233333332 557899999999999999999999999999999998876
Q ss_pred hcccCcch-------HHHHHHHHHH-----hhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCc
Q 004267 553 TMWFGESE-------ANVREIFDKA-----RQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKT 620 (764)
Q Consensus 553 ~~~~g~se-------~~i~~~f~~a-----~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~ 620 (764)
+.++.... ..++.+|..+ ....++||||||+|.+.... ...++.|+..++. ....
T Consensus 115 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~-----------~~~l~~L~~~l~~--~~~~ 181 (516)
T 1sxj_A 115 SKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGD-----------RGGVGQLAQFCRK--TSTP 181 (516)
T ss_dssp CHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTS-----------TTHHHHHHHHHHH--CSSC
T ss_pred hHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhh-----------HHHHHHHHHHHHh--cCCC
Confidence 54332211 0133444443 23567899999999986521 1124445554443 2234
Q ss_pred EEEEecCCCCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccC--CCCCcccHHHHHHHCCCCCHHHHHHHHHHH
Q 004267 621 VFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKS--PVSKDVDLRALAKYTQGFSGADITEICQRA 698 (764)
Q Consensus 621 v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~--~~~~~~~l~~la~~~~g~sg~di~~~~~~a 698 (764)
+++++++.....+.+ +. |+...+.|++|+.+++.++++..+.+. .+.+ ..+..+++.+.| |++.+++..
T Consensus 182 iIli~~~~~~~~l~~-l~---~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~-~~l~~la~~s~G----diR~~i~~L 252 (516)
T 1sxj_A 182 LILICNERNLPKMRP-FD---RVCLDIQFRRPDANSIKSRLMTIAIREKFKLDP-NVIDRLIQTTRG----DIRQVINLL 252 (516)
T ss_dssp EEEEESCTTSSTTGG-GT---TTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCT-THHHHHHHHTTT----CHHHHHHHH
T ss_pred EEEEEcCCCCccchh-hH---hceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHcCC----cHHHHHHHH
Confidence 555555544444543 43 555699999999999999998877543 3433 347888888754 444444433
No 92
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.62 E-value=9.5e-15 Score=189.92 Aligned_cols=408 Identities=17% Similarity=0.221 Sum_probs=214.2
Q ss_pred CCceEEEECCCCCCHHHHHH-HHHHHhCCeEEEEechhhhhhccchhHHHHHHHHHHHH---------------hcCCeE
Q 004267 241 PPKGILLYGPPGSGKTLIAR-AVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAE---------------KNAPSI 304 (764)
Q Consensus 241 ~~~~vLL~GppGtGKTtLar-~la~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~---------------~~~p~i 304 (764)
.++++||+||||||||++|+ +++...+..++.++.+...+ ...+...++... ...++|
T Consensus 1266 ~~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts------~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~V 1339 (2695)
T 4akg_A 1266 SKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTT------TEHILSALHRHTNYVTTSKGLTLLPKSDIKNLV 1339 (2695)
T ss_dssp HTCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCC------HHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCC------HHHHHHHHHHHhhhccccCCccccCCCCCceEE
Confidence 46799999999999999995 45554466777787655432 233444444331 123479
Q ss_pred EEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCC-------CeEEEEEecCCC-----CCCChhhhccCCcceEEE
Q 004267 305 IFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSR-------AHVIVIGATNRP-----NSIDPALRRFGRFDREID 372 (764)
Q Consensus 305 l~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~-------~~v~vI~atn~~-----~~ld~al~r~~rf~~~i~ 372 (764)
+||||++.....+.... ....++.|+++.-.-+..+ .++.+|||||+| ..+++++.| || ..+.
T Consensus 1340 lFiDEinmp~~d~yg~q--~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR--rf-~vi~ 1414 (2695)
T 4akg_A 1340 LFCDEINLPKLDKYGSQ--NVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR--HA-AILY 1414 (2695)
T ss_dssp EEEETTTCSCCCSSSCC--HHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--TE-EEEE
T ss_pred EEecccccccccccCch--hHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh--ee-eEEE
Confidence 99999997544433222 2233445554321111111 258999999999 489999998 78 7799
Q ss_pred ecCCChHHHHHHHHHHhcCCC-CCCchh--hh-----------HH-------hhhcCCCchHHHHHHHHHHHHH------
Q 004267 373 IGVPDEVGRLEVLRIHTKNMK-LSDDVD--LE-----------RI-------AKDTHGYVGADLAALCTEAALQ------ 425 (764)
Q Consensus 373 i~~p~~~~R~~il~~~~~~~~-l~~~~~--l~-----------~l-------a~~t~g~~~~dl~~l~~~a~~~------ 425 (764)
++.|+.+.+..|+..+++... ...++. .. .+ ++...-|+.+|+..+++-....
T Consensus 1415 i~~P~~~~l~~I~~~il~~~l~~~~~v~~~~~~lv~ati~~y~~v~~~~~~~~k~HY~FnlRDLsrv~qGll~~~~~~~~ 1494 (2695)
T 4akg_A 1415 LGYPSGKSLSQIYEIYYKAIFKLVPEFRSYTEPFARASVHLYNECKARYSTGLQSHYLFSPRELTRLVRGVYTAINTGPR 1494 (2695)
T ss_dssp CCCCTTTHHHHHHHHHHHHHTTSSGGGGGGHHHHHHHHHHHHHHHHHHSCTTTCTTCCCCHHHHHHHHHHHHHHHHTSSC
T ss_pred eCCCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccCHHHHHHHHHHHHhcCchhhh
Confidence 999999999999987764321 111110 00 00 0112346777777666533221
Q ss_pred -------------HHHhhccc-cccccchhhHHHhhhhcccchhhhcccc---ccCCCCcceeeeeccCccccccccchh
Q 004267 426 -------------CIREKMDV-IDLEDETIDAEILNSMAVSNEHFQTALG---TSNPSALRETVVEVPNVSWEDIGGLEN 488 (764)
Q Consensus 426 -------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~al~---~~~ps~~~~~~~~~~~v~~~~i~g~~~ 488 (764)
+.|-..+. ++.++...-.+.... +...+|..... ...|-- +.+.-...+.++.. +.
T Consensus 1495 ~~~~~l~rLw~HE~~Rvf~DRLv~~~D~~~f~~~l~~--~~~~~f~~~~~~~~~~~~~~----f~df~~~~Y~~v~~-~~ 1567 (2695)
T 4akg_A 1495 QTLRSLIRLWAYEAWRIFADRLVGVKEKNSFEQLLYE--TVDKYLPNQDLGNISSTSLL----FSGLLSLDFKEVNK-TD 1567 (2695)
T ss_dssp CCHHHHHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHH--HHHHHSCCSCCCCCSTTTCC----EESSSSSSCEECCH-HH
T ss_pred ccHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HHHHHhcccchhhhccCCce----eeecCCCcceecCH-HH
Confidence 11100010 000000000000000 11112211000 001100 01111112344432 33
Q ss_pred hhhcccceee---------------ccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccchh
Q 004267 489 VKRELQETVQ---------------YPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 553 (764)
Q Consensus 489 ~k~~l~~~v~---------------~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~~ 553 (764)
+++.+.+.+. ..+.|.-.+.+.-.+|..++||+|++||||++|+|..|..++..++.+..+.-++
T Consensus 1568 l~~~l~~~l~~yn~~~~~m~LVlF~dai~Hi~RI~Ril~~p~G~~LLvGvgGsGkqSltrLaa~i~~~~~fqi~~~~~Y~ 1647 (2695)
T 4akg_A 1568 LVNFIEERFKTFCDEELEVPMVIHESMVDHILRIDRALKQVQGHMMLIGASRTGKTILTRFVAWLNGLKIVQPKIHRHSN 1647 (2695)
T ss_dssp HHHHHHHHHHHHHHHSCCCCCCCCHHHHHHHHHHHHHHHSSSEEEEEECTTTSCHHHHHHHHHHHTTCEEECCCCCTTCC
T ss_pred HHHHHHHHHHHHHhhcCCceeeeHHHHHHHHHHHHHHHcCCCCCEEEECCCCCcHHHHHHHHHHHhCCeeEEEEeeCCCC
Confidence 3333332221 1122333444445567778999999999999999999999999999888654221
Q ss_pred cccCcchHHHHHHHHHHh-hCCCeEEEEecccc-----------hhhccCCCCCCCCcchHHHHHHHHHhh--cCCC-C-
Q 004267 554 MWFGESEANVREIFDKAR-QSAPCVLFFDELDS-----------IATQRGSSVGDAGGAADRVLNQLLTEM--DGMS-A- 617 (764)
Q Consensus 554 ~~~g~se~~i~~~f~~a~-~~~p~iifiDEid~-----------l~~~r~~~~~~~~~~~~~~~~~lL~~l--d~~~-~- 617 (764)
..+-...++.++.+|. +..|.+++|+|..- ++....-..-=.....+.+++.+-... .|.. +
T Consensus 1648 --~~~f~eDLk~l~~~aG~~~~~~vFL~tD~qi~~e~FLE~IN~lL~sGEVP~LF~~dE~~~i~~~~r~~~~~~g~~~~t 1725 (2695)
T 4akg_A 1648 --LSDFDMILKKAISDCSLKESRTCLIIDESNILETAFLERMNTLLANADIPDLFQGEEYDKLLNNLRNKTRSLGLLLDT 1725 (2695)
T ss_dssp --HHHHHHHHHHHHHHHHHSCCCEEEEEETTTCCSHHHHHHHHHHHHSSSCTTTSCTHHHHHHHHHHHHHHHHHTCCCCS
T ss_pred --HHHHHHHHHHHHHHcCCCCCceEEEEeccccccHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHhHHHHHhcCCCCCC
Confidence 1233567999999985 45677888887532 222110000000111233444333221 1221 1
Q ss_pred ------------CCcEEEEecCCCCC-------CCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCC
Q 004267 618 ------------KKTVFIIGATNRPD-------IIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS 671 (764)
Q Consensus 618 ------------~~~v~vi~aTn~~~-------~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~ 671 (764)
.+++-|+.+-+... ..-|||.. ++. +-.|..-..++...+-+.+++..++.
T Consensus 1726 ~~~l~~~Fi~rvr~NLHvVL~mSP~g~~fr~R~r~fPaLvn--~ct-IdWf~~Wp~eAL~~Va~~fl~~~~~~ 1795 (2695)
T 4akg_A 1726 EQELYDWFVGEIAKNLHVVFTICDPTNNKSSAMISSPALFN--RCI-INWMGDWDTKTMSQVANNMVDVIPME 1795 (2695)
T ss_dssp HHHHHHHHHHHHHHHCEEEEEESCTTSHHHHHHHHSHHHHH--HSE-EEECCSCCHHHHHHHHHHHSCSCCCC
T ss_pred HHHHHHHHHHHHHHcCEEEEEECCCChHHHHHHHhChHhhc--cee-EeecCCCCHHHHHHHHHHHhhccCcc
Confidence 12334444433321 11366765 544 55677777888999999999876543
No 93
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.62 E-value=8.1e-15 Score=160.02 Aligned_cols=201 Identities=22% Similarity=0.297 Sum_probs=141.4
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCC--eEEEEechhhhhhcc
Q 004267 206 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA--FFFCINGPEIMSKLA 283 (764)
Q Consensus 206 ~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~--~~i~v~~~~l~~~~~ 283 (764)
+|+++.|.+..++.+..+...- . -+..++.++||+||||||||++|+++++.++. +++.+++..+.+.+.
T Consensus 42 ~~~~ivG~~~~~~~l~~l~~~~-------~-~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~ 113 (368)
T 3uk6_A 42 ASQGMVGQLAARRAAGVVLEMI-------R-EGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEM 113 (368)
T ss_dssp EETTEESCHHHHHHHHHHHHHH-------H-TTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSSS
T ss_pred chhhccChHHHHHHHHHHHHHH-------H-cCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhccc
Confidence 4899999999988876555431 1 13345689999999999999999999999975 678888766433222
Q ss_pred c-------------------------------------------------hhHHHHHHHHHHHHh-----c----CCeEE
Q 004267 284 G-------------------------------------------------ESESNLRKAFEEAEK-----N----APSII 305 (764)
Q Consensus 284 g-------------------------------------------------~~~~~l~~vf~~a~~-----~----~p~il 305 (764)
+ +....++..+..+.. . .|++|
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl 193 (368)
T 3uk6_A 114 SKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVL 193 (368)
T ss_dssp CHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEE
T ss_pred chhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceE
Confidence 2 223345555554433 1 16799
Q ss_pred EEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEec-----------CCCCCCChhhhccCCcceEEEec
Q 004267 306 FIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGAT-----------NRPNSIDPALRRFGRFDREIDIG 374 (764)
Q Consensus 306 ~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~at-----------n~~~~ld~al~r~~rf~~~i~i~ 374 (764)
||||+|.+.+ .....|+..++.... .++++++. |.+..+++++++ ||.. +.++
T Consensus 194 ~IDEi~~l~~-----------~~~~~L~~~le~~~~--~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~~-i~~~ 257 (368)
T 3uk6_A 194 FIDEVHMLDI-----------ESFSFLNRALESDMA--PVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLLI-VSTT 257 (368)
T ss_dssp EEESGGGSBH-----------HHHHHHHHHTTCTTC--CEEEEEESCSEEECBTSSCEEETTCCHHHHT--TEEE-EEEC
T ss_pred EEhhccccCh-----------HHHHHHHHHhhCcCC--CeeeeecccceeeeeccCCCCcccCCHHHHh--hccE-EEec
Confidence 9999998742 244566666665332 45555543 346789999998 8866 8999
Q ss_pred CCChHHHHHHHHHHhcCCCC-CCchhhhHHhhhcCCCchHHHHHHHHHHHHHHHHhh
Q 004267 375 VPDEVGRLEVLRIHTKNMKL-SDDVDLERIAKDTHGYVGADLAALCTEAALQCIREK 430 (764)
Q Consensus 375 ~p~~~~R~~il~~~~~~~~l-~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~ 430 (764)
.|+.+++.++++..+..... .++..++.++..+.+...+++..++..+...+..+.
T Consensus 258 ~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~ 314 (368)
T 3uk6_A 258 PYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRK 314 (368)
T ss_dssp CCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC
Confidence 99999999999977654332 234457888888886678889999999887765443
No 94
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.62 E-value=3.8e-15 Score=149.67 Aligned_cols=200 Identities=21% Similarity=0.233 Sum_probs=139.8
Q ss_pred CccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHh-----CCeeEEEecccc
Q 004267 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPEL 551 (764)
Q Consensus 477 ~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~-----~~~~i~v~~~~l 551 (764)
...|+++.|.+...+.+.+.+.. ....+++|+||||||||++|++++..+ ...++.+++++.
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~ 79 (226)
T 2chg_A 13 PRTLDEVVGQDEVIQRLKGYVER-------------KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDE 79 (226)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHT-------------TCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCT
T ss_pred CCCHHHHcCcHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccc
Confidence 34578888888888877665432 122349999999999999999999875 456777777553
Q ss_pred hhcccCcchHHHHHHHHHHh------hCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEe
Q 004267 552 LTMWFGESEANVREIFDKAR------QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIG 625 (764)
Q Consensus 552 ~~~~~g~se~~i~~~f~~a~------~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~ 625 (764)
.+ ...++..+.... ...+.+|||||++.+.. ...+.|+..++.. ..++.+|+
T Consensus 80 ~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~--------------~~~~~l~~~l~~~--~~~~~~i~ 137 (226)
T 2chg_A 80 RG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA--------------DAQAALRRTMEMY--SKSCRFIL 137 (226)
T ss_dssp TC------HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCH--------------HHHHHHHHHHHHT--TTTEEEEE
T ss_pred cC------hHHHHHHHHHHhcccCCCccCceEEEEeChhhcCH--------------HHHHHHHHHHHhc--CCCCeEEE
Confidence 21 122333222221 25678999999999743 2244455555542 34678888
Q ss_pred cCCCCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q 004267 626 ATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRACKYAIR 704 (764)
Q Consensus 626 aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~~g~sg~di~~~~~~a~~~a~~ 704 (764)
+||.++.+++++.+ ||. .+.+++|+.++..++++..+.+.+.. ++..+..+++.+.| +.+.+.++++.++..+
T Consensus 138 ~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~~-- 211 (226)
T 2chg_A 138 SCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAAAIG-- 211 (226)
T ss_dssp EESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHHHTC--
T ss_pred EeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhcC--
Confidence 99999999999998 898 99999999999999999888654433 23346677777654 6666666666554321
Q ss_pred HHHHHhHHHHhhhcCCCccccccccccccccccHHHHHHHHH
Q 004267 705 ENIEKDIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMK 746 (764)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~ 746 (764)
..|+.+|+++++.
T Consensus 212 -----------------------------~~I~~~~v~~~~~ 224 (226)
T 2chg_A 212 -----------------------------EVVDADTIYQITA 224 (226)
T ss_dssp -----------------------------SCBCHHHHHHHHH
T ss_pred -----------------------------ceecHHHHHHHhc
Confidence 2699999999886
No 95
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.61 E-value=1.8e-14 Score=155.35 Aligned_cols=194 Identities=21% Similarity=0.284 Sum_probs=142.0
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhhh
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~ 280 (764)
.+.+.+|+++.|.+..++.+.+++...... -.+..++||+||||||||++|++++..++.+++.+++..+.
T Consensus 22 ~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~--------~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~- 92 (338)
T 3pfi_A 22 SLRPSNFDGYIGQESIKKNLNVFIAAAKKR--------NECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE- 92 (338)
T ss_dssp -CCCCSGGGCCSCHHHHHHHHHHHHHHHHT--------TSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC-
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHHhc--------CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc-
Confidence 355668999999999999998888753211 13456899999999999999999999999999999987652
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccC----------------CCe
Q 004267 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKS----------------RAH 344 (764)
Q Consensus 281 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~----------------~~~ 344 (764)
....+...+.. ...+++|||||++.+.+ .....|+..++...- .++
T Consensus 93 -----~~~~~~~~~~~--~~~~~vl~lDEi~~l~~-----------~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~ 154 (338)
T 3pfi_A 93 -----KSGDLAAILTN--LSEGDILFIDEIHRLSP-----------AIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPK 154 (338)
T ss_dssp -----SHHHHHHHHHT--CCTTCEEEEETGGGCCH-----------HHHHHHHHHHHTSCC---------CCCCCCCCCC
T ss_pred -----chhHHHHHHHh--ccCCCEEEEechhhcCH-----------HHHHHHHHHHHhccchhhcccCccccceecCCCC
Confidence 12233333333 24678999999998852 233556666654321 124
Q ss_pred EEEEEecCCCCCCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCC-CchhhhHHhhhcCCCchHHHHHHHHHHH
Q 004267 345 VIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTEAA 423 (764)
Q Consensus 345 v~vI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~a~ 423 (764)
+.+|++||+...+++++++ ||+..+.++.|+.+++.++++.++...... ++..+..++..+.|.. ..+..++..+.
T Consensus 155 ~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~~-r~l~~~l~~~~ 231 (338)
T 3pfi_A 155 FTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTP-RIALRLLKRVR 231 (338)
T ss_dssp CEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTCH-HHHHHHHHHHH
T ss_pred eEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCH-HHHHHHHHHHH
Confidence 8899999999999999998 899999999999999999999877654432 3345677777666654 55556666554
Q ss_pred H
Q 004267 424 L 424 (764)
Q Consensus 424 ~ 424 (764)
.
T Consensus 232 ~ 232 (338)
T 3pfi_A 232 D 232 (338)
T ss_dssp H
T ss_pred H
Confidence 3
No 96
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.61 E-value=1.8e-15 Score=154.37 Aligned_cols=181 Identities=12% Similarity=0.169 Sum_probs=125.4
Q ss_pred CCcceeeeCCCCCChhHHHHHHHHHhC---CeeEEEecccchhcccCcchHHHHHHHHHHhhCCCeEEEEecccchhhcc
Q 004267 514 PSKGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQR 590 (764)
Q Consensus 514 ~~~gill~GppGtGKT~lak~lA~~~~---~~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r 590 (764)
.+.+++|+||||||||++|++++..+. .+++.+++.++...+.. .++.. ..+.++||||++.+...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~--~~~~vliiDe~~~~~~~- 119 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASISTA--------LLEGL--EQFDLICIDDVDAVAGH- 119 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSCGG--------GGTTG--GGSSEEEEETGGGGTTC-
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHH--------HHHhc--cCCCEEEEeccccccCC-
Confidence 346799999999999999999999764 67888888876543211 11111 34679999999997532
Q ss_pred CCCCCCCCcchHHHHHHHHHhhcCCCCCCcE-EEEecCCCCC---CCCccCCCCCccc--eEEeecCCCHHHHHHHHHHH
Q 004267 591 GSSVGDAGGAADRVLNQLLTEMDGMSAKKTV-FIIGATNRPD---IIDPALLRPGRLD--QLIYIPLPDEDSRHQIFKAC 664 (764)
Q Consensus 591 ~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v-~vi~aTn~~~---~ld~allrpgRf~--~~i~~~~p~~~~r~~Il~~~ 664 (764)
....+.|+..++.......+ +|+++++.++ .+++++.+ ||. ..+++++|+.+++.++++.+
T Consensus 120 -----------~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~ 186 (242)
T 3bos_A 120 -----------PLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRR 186 (242)
T ss_dssp -----------HHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHH
Confidence 11122333333322222333 5555555554 45577877 886 89999999999999999999
Q ss_pred hccCCCC-CcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCCCccccccccccccccccHHHHHH
Q 004267 665 LRKSPVS-KDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEE 743 (764)
Q Consensus 665 ~~~~~~~-~~~~l~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~ 743 (764)
++..++. ++..++.+++.+.| +.+++.++++.|...|..+. ..||.+|+++
T Consensus 187 ~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~a~~~~---------------------------~~It~~~v~~ 238 (242)
T 3bos_A 187 AAMRGLQLPEDVGRFLLNRMAR-DLRTLFDVLDRLDKASMVHQ---------------------------RKLTIPFVKE 238 (242)
T ss_dssp HHHTTCCCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHHT---------------------------CCCCHHHHHH
T ss_pred HHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHhC---------------------------CCCcHHHHHH
Confidence 8765443 23346778888765 88999999998887764332 2599999999
Q ss_pred HHH
Q 004267 744 SMK 746 (764)
Q Consensus 744 a~~ 746 (764)
+++
T Consensus 239 ~l~ 241 (242)
T 3bos_A 239 MLR 241 (242)
T ss_dssp HHT
T ss_pred Hhh
Confidence 875
No 97
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.61 E-value=3.8e-16 Score=153.15 Aligned_cols=158 Identities=21% Similarity=0.362 Sum_probs=114.2
Q ss_pred ccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHh----------CCeeEEEe
Q 004267 478 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISVK 547 (764)
Q Consensus 478 v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~----------~~~~i~v~ 547 (764)
..|+++.|.+...+.+.+.+.. ..+.+++|+||||||||++|++++..+ +.+++.++
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (195)
T 1jbk_A 19 GKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 85 (195)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEEC
T ss_pred ccccccccchHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEee
Confidence 3467777887766665544221 234679999999999999999999985 68888998
Q ss_pred cccch--hcccCcchHHHHHHHHHHh-hCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEE
Q 004267 548 GPELL--TMWFGESEANVREIFDKAR-QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFII 624 (764)
Q Consensus 548 ~~~l~--~~~~g~se~~i~~~f~~a~-~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi 624 (764)
+.++. ..+.|.....+..+|+.+. ...++++||||+|.+...+... . .......+..++ + ..++.+|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~--~-~~~~~~~l~~~~---~----~~~~~~i 155 (195)
T 1jbk_A 86 MGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKAD--G-AMDAGNMLKPAL---A----RGELHCV 155 (195)
T ss_dssp HHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT---------CCCCHHHHHHHH---H----TTSCCEE
T ss_pred HHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCccc--c-hHHHHHHHHHhh---c----cCCeEEE
Confidence 88776 4556677778888888664 4558899999999997654321 1 112233333333 2 2456788
Q ss_pred ecCCCCC-----CCCccCCCCCccceEEeecCCCHHHHHHHH
Q 004267 625 GATNRPD-----IIDPALLRPGRLDQLIYIPLPDEDSRHQIF 661 (764)
Q Consensus 625 ~aTn~~~-----~ld~allrpgRf~~~i~~~~p~~~~r~~Il 661 (764)
++||.++ .+|+++++ ||+ .+++++|+.+++.+|+
T Consensus 156 ~~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 156 GATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp EEECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred EeCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 8888876 78999998 998 6999999999998876
No 98
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.61 E-value=1.1e-15 Score=164.48 Aligned_cols=155 Identities=17% Similarity=0.226 Sum_probs=105.2
Q ss_pred ccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecc------cchh
Q 004267 480 WEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGP------ELLT 553 (764)
Q Consensus 480 ~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~------~l~~ 553 (764)
++++.|++.+++.+...+.. ..++||+||||||||++|+++|..++.+++.+++. ++.+
T Consensus 26 ~~~i~g~~~~~~~l~~~l~~---------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g 90 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGICT---------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIG 90 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHHH---------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHE
T ss_pred ccceeCcHHHHHHHHHHHHc---------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCC
Confidence 35677888877666543221 24799999999999999999999999999988863 2222
Q ss_pred cccCc-chHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCC---------CCCCcEEE
Q 004267 554 MWFGE-SEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGM---------SAKKTVFI 623 (764)
Q Consensus 554 ~~~g~-se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~---------~~~~~v~v 623 (764)
...-. ..... .|.. .....+|+|+||++.+.+ ...+.|+..|+.. ....+++|
T Consensus 91 ~~~~~~~~~~~--~~~~-g~l~~~vl~iDEi~~~~~--------------~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~v 153 (331)
T 2r44_A 91 TMIYNQHKGNF--EVKK-GPVFSNFILADEVNRSPA--------------KVQSALLECMQEKQVTIGDTTYPLDNPFLV 153 (331)
T ss_dssp EEEEETTTTEE--EEEE-CTTCSSEEEEETGGGSCH--------------HHHHHHHHHHHHSEEEETTEEEECCSSCEE
T ss_pred ceeecCCCCce--Eecc-CcccccEEEEEccccCCH--------------HHHHHHHHHHhcCceeeCCEEEECCCCEEE
Confidence 11100 00000 0000 000137999999998632 3455566555532 12346788
Q ss_pred EecCCCCC-----CCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccC
Q 004267 624 IGATNRPD-----IIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKS 668 (764)
Q Consensus 624 i~aTn~~~-----~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~ 668 (764)
|+|+|..+ .+++++++ ||+..+++++|+.+++.+|++.++...
T Consensus 154 iat~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~~ 201 (331)
T 2r44_A 154 LATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNMN 201 (331)
T ss_dssp EEEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCTT
T ss_pred EEecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhccccC
Confidence 88888554 38999998 999999999999999999999988653
No 99
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.60 E-value=9.4e-15 Score=159.32 Aligned_cols=220 Identities=23% Similarity=0.305 Sum_probs=147.1
Q ss_pred cccChHHHHHHHHHHHHccccChhhhhh-hCC-CCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhhhh-ccch
Q 004267 209 DVGGVRKQMAQIRELVELPLRHPQLFKS-IGV-KPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSK-LAGE 285 (764)
Q Consensus 209 ~i~Gl~~~~~~l~e~i~~~l~~~~~~~~-l~i-~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~-~~g~ 285 (764)
.|.|++..++.+...+...+........ ... .++.++||+||||||||++|++||..++.+|+.+++.++... +.|.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~ 95 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence 3799999999998888533221110000 111 356789999999999999999999999999999999988743 6665
Q ss_pred h-HHHHHHHHHHH----HhcCCeEEEEccccccCCCCCCCc---hHHHHHHHHHHHHHhhccc-----------------
Q 004267 286 S-ESNLRKAFEEA----EKNAPSIIFIDEIDSIAPKREKTH---GEVERRIVSQLLTLMDGLK----------------- 340 (764)
Q Consensus 286 ~-~~~l~~vf~~a----~~~~p~il~iDEid~l~~~~~~~~---~~~~~~v~~~Ll~~ld~~~----------------- 340 (764)
. ...+..+|..+ ....+++|||||+|.+.+.+.... .....++...|+..|++..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~ 175 (363)
T 3hws_A 96 DVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 175 (363)
T ss_dssp HHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CC
T ss_pred cHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceE
Confidence 4 45667777765 445578999999999988765432 2233457888999998421
Q ss_pred --CCCeEEEEEecCCC----------CC-----------------------------------CChhhhccCCcceEEEe
Q 004267 341 --SRAHVIVIGATNRP----------NS-----------------------------------IDPALRRFGRFDREIDI 373 (764)
Q Consensus 341 --~~~~v~vI~atn~~----------~~-----------------------------------ld~al~r~~rf~~~i~i 373 (764)
...++++|++++.. .. +.|+|.. ||+..+.+
T Consensus 176 ~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~~ 253 (363)
T 3hws_A 176 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVATL 253 (363)
T ss_dssp CCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEEC
T ss_pred EEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeeec
Confidence 11233444444321 11 5677765 99999999
Q ss_pred cCCChHHHHHHHHH----Hh-------c--CCCC-CCchhhhHHhh--hcCCCchHHHHHHHHHHHHHHHHhh
Q 004267 374 GVPDEVGRLEVLRI----HT-------K--NMKL-SDDVDLERIAK--DTHGYVGADLAALCTEAALQCIREK 430 (764)
Q Consensus 374 ~~p~~~~R~~il~~----~~-------~--~~~l-~~~~~l~~la~--~t~g~~~~dl~~l~~~a~~~~~~~~ 430 (764)
..|+.+++.+|+.. +. . +..+ ..+..++.++. ....+..+.+.+++..+....+.+.
T Consensus 254 ~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~~ 326 (363)
T 3hws_A 254 NELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDL 326 (363)
T ss_dssp CCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHST
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHhc
Confidence 99999999988874 11 1 1111 12334566665 3345566788888888777666543
No 100
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.60 E-value=3.6e-15 Score=163.61 Aligned_cols=212 Identities=22% Similarity=0.277 Sum_probs=146.5
Q ss_pred cccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHh-----------CCeeEEEecc
Q 004267 481 EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC-----------QANFISVKGP 549 (764)
Q Consensus 481 ~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~-----------~~~~i~v~~~ 549 (764)
+++.|.+...+.+.+.+..... -..+.+++|+||||||||++|++++..+ +.+++.+++.
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK---------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT---------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CCCCChHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 6678888777777655432111 1234579999999999999999999987 8899999876
Q ss_pred cch-h----------c-------ccCcc-hHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHH-HHHHH
Q 004267 550 ELL-T----------M-------WFGES-EANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRV-LNQLL 609 (764)
Q Consensus 550 ~l~-~----------~-------~~g~s-e~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~-~~~lL 609 (764)
+.. + . +.|.+ ...+..+++.+....+ +|||||+|.+...+. ..+ +..|+
T Consensus 91 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-vlilDEi~~l~~~~~----------~~~~l~~l~ 159 (384)
T 2qby_B 91 EVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRA-IIYLDEVDTLVKRRG----------GDIVLYQLL 159 (384)
T ss_dssp HHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCE-EEEEETTHHHHHSTT----------SHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCC-EEEEECHHHhccCCC----------CceeHHHHh
Confidence 532 1 1 11222 2335555655555444 999999999865321 233 55555
Q ss_pred HhhcCCCCCCcEEEEecCCCC---CCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhcc----CCCCCcccHHHHHHH
Q 004267 610 TEMDGMSAKKTVFIIGATNRP---DIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRK----SPVSKDVDLRALAKY 682 (764)
Q Consensus 610 ~~ld~~~~~~~v~vi~aTn~~---~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~----~~~~~~~~l~~la~~ 682 (764)
... .++.+|+|||.+ +.+++++++ ||...++|++|+.++..+|++..++. ..+. +..++.+++.
T Consensus 160 ~~~------~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~-~~~~~~i~~~ 230 (384)
T 2qby_B 160 RSD------ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD-DEILSYIAAI 230 (384)
T ss_dssp TSS------SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC-SHHHHHHHHH
T ss_pred cCC------cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC-HHHHHHHHHH
Confidence 443 578899999987 678899887 88889999999999999999998763 2232 3346677777
Q ss_pred CCC--CCHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCCCccccccccccccccccHHHHHHHHHhcC
Q 004267 683 TQG--FSGADITEICQRACKYAIRENIEKDIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFAR 749 (764)
Q Consensus 683 ~~g--~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~ 749 (764)
+.+ -+.+.+.++|+.|+..|. ....|+.+|+.+|+..+.
T Consensus 231 ~~~~~G~~r~a~~~l~~a~~~a~----------------------------~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 231 SAKEHGDARKAVNLLFRAAQLAS----------------------------GGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHTT----------------------------SSSCCCHHHHHHHHHHHH
T ss_pred HHhccCCHHHHHHHHHHHHHHhc----------------------------CCCccCHHHHHHHHHHHh
Confidence 652 345677778888765543 023578888888777664
No 101
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.60 E-value=1.3e-15 Score=182.17 Aligned_cols=185 Identities=23% Similarity=0.317 Sum_probs=131.1
Q ss_pred ccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHh----------CCeeEEEe
Q 004267 478 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISVK 547 (764)
Q Consensus 478 v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~----------~~~~i~v~ 547 (764)
-.++++.|.+...+.+.+.+.. ....++||+||||||||++|+++|..+ +..++.++
T Consensus 177 ~~ld~iiG~~~~i~~l~~~l~~-------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~ 243 (758)
T 3pxi_A 177 DSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLD 243 (758)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-
T ss_pred CCCCCccCchHHHHHHHHHHhC-------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEec
Confidence 3567888988888776654321 334579999999999999999999986 77788777
Q ss_pred cccchhcccCcchHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecC
Q 004267 548 GPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGAT 627 (764)
Q Consensus 548 ~~~l~~~~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aT 627 (764)
+ ..+|.|+.+..++.+|..+....++||||| +. ....+.|+..|+ .+.+.+|+||
T Consensus 244 ~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD---------~~---------~~~~~~L~~~l~----~~~v~~I~at 298 (758)
T 3pxi_A 244 M---GTKYRGEFEDRLKKVMDEIRQAGNIILFID---------AA---------IDASNILKPSLA----RGELQCIGAT 298 (758)
T ss_dssp ------------CTTHHHHHHHHHTCCCCEEEEC---------C-----------------CCCTT----SSSCEEEEEC
T ss_pred c---cccccchHHHHHHHHHHHHHhcCCEEEEEc---------Cc---------hhHHHHHHHHHh----cCCEEEEeCC
Confidence 7 567899999999999999999999999999 10 113344555554 5578999999
Q ss_pred CCCC-----CCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCC----C-CcccHHHHHHH-----CCCCCHHHHH
Q 004267 628 NRPD-----IIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPV----S-KDVDLRALAKY-----TQGFSGADIT 692 (764)
Q Consensus 628 n~~~-----~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~----~-~~~~l~~la~~-----~~g~sg~di~ 692 (764)
|..+ .+|+++.| ||. .|+|+.|+.+++.+||+.+..+... . .+..+..++.. ++++.+....
T Consensus 299 ~~~~~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai 375 (758)
T 3pxi_A 299 TLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAI 375 (758)
T ss_dssp CTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHH
T ss_pred ChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHH
Confidence 9988 79999999 995 6999999999999999988766322 1 22234455543 3467778888
Q ss_pred HHHHHHHHHHH
Q 004267 693 EICQRACKYAI 703 (764)
Q Consensus 693 ~~~~~a~~~a~ 703 (764)
.++.+|+..+.
T Consensus 376 ~ll~~a~~~~~ 386 (758)
T 3pxi_A 376 DLIDEAGSKVR 386 (758)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888876554
No 102
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.60 E-value=8.5e-15 Score=149.03 Aligned_cols=184 Identities=21% Similarity=0.337 Sum_probs=131.8
Q ss_pred ccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCe---------------
Q 004267 478 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN--------------- 542 (764)
Q Consensus 478 v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~--------------- 542 (764)
..|+++.|.+...+.+.+.+.. + ..+..++|+||||+|||+++++++......
T Consensus 20 ~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (250)
T 1njg_A 20 QTFADVVGQEHVLTALANGLSL-----------G-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 87 (250)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHH-----------T-CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHH
T ss_pred ccHHHHhCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHH
Confidence 3467888888888777665432 1 123469999999999999999999976432
Q ss_pred ---------eEEEecccchhcccCcchHHHHHHHHHHh----hCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHH
Q 004267 543 ---------FISVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLL 609 (764)
Q Consensus 543 ---------~i~v~~~~l~~~~~g~se~~i~~~f~~a~----~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL 609 (764)
++.+.... ......++.+++.+. ...+.+|||||++.+. ....+.|+
T Consensus 88 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~--------------~~~~~~l~ 147 (250)
T 1njg_A 88 EIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS--------------RHSFNALL 147 (250)
T ss_dssp HHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSC--------------HHHHHHHH
T ss_pred HHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECccccc--------------HHHHHHHH
Confidence 12222111 112344666666553 2347899999999863 23556677
Q ss_pred HhhcCCCCCCcEEEEecCCCCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCCCCH
Q 004267 610 TEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS-KDVDLRALAKYTQGFSG 688 (764)
Q Consensus 610 ~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~~g~sg 688 (764)
..++.. ..++.+|++||.++.+++++.+ |+ ..+++++|+.++..++++.++.+.+.. ++..+..+++.+.| +.
T Consensus 148 ~~l~~~--~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~ 221 (250)
T 1njg_A 148 KTLEEP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SL 221 (250)
T ss_dssp HHHHSC--CTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTT-CH
T ss_pred HHHhcC--CCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC-CH
Confidence 777653 4468888899999999999887 76 689999999999999999988665433 23347788888876 88
Q ss_pred HHHHHHHHHHH
Q 004267 689 ADITEICQRAC 699 (764)
Q Consensus 689 ~di~~~~~~a~ 699 (764)
+.+.++|+.|.
T Consensus 222 ~~~~~~~~~~~ 232 (250)
T 1njg_A 222 RDALSLTDQAI 232 (250)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988774
No 103
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.60 E-value=9.9e-15 Score=159.81 Aligned_cols=202 Identities=19% Similarity=0.263 Sum_probs=136.4
Q ss_pred ccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHh------CCeeEEEecccchh
Q 004267 480 WEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC------QANFISVKGPELLT 553 (764)
Q Consensus 480 ~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~------~~~~i~v~~~~l~~ 553 (764)
.+++.|.+...+.+.+.+..... -..+..++|+||||||||+|++++++.+ +.+++.+++....+
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~---------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~ 89 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYR---------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDT 89 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGG---------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCS
T ss_pred CCCCCChHHHHHHHHHHHHHHHc---------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCC
Confidence 36678888777777665432111 1334579999999999999999999987 88899998754321
Q ss_pred ------c----------ccCcchH-HHHHHHHHHhhCC-CeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCC
Q 004267 554 ------M----------WFGESEA-NVREIFDKARQSA-PCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGM 615 (764)
Q Consensus 554 ------~----------~~g~se~-~i~~~f~~a~~~~-p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~ 615 (764)
. ..|.+.. ....+++...... |++|||||++.+....+ ..++..++..++..
T Consensus 90 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~----------~~~l~~l~~~~~~~ 159 (386)
T 2qby_A 90 PYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN----------DDILYKLSRINSEV 159 (386)
T ss_dssp HHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC----------STHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCc----------CHHHHHHhhchhhc
Confidence 1 1122222 3445555554443 89999999999875421 23566777777654
Q ss_pred CCCCcEEEEecCCCC---CCCCccCCCCCccc-eEEeecCCCHHHHHHHHHHHhcc----CCCCCcccHHHHHHHCCC--
Q 004267 616 SAKKTVFIIGATNRP---DIIDPALLRPGRLD-QLIYIPLPDEDSRHQIFKACLRK----SPVSKDVDLRALAKYTQG-- 685 (764)
Q Consensus 616 ~~~~~v~vi~aTn~~---~~ld~allrpgRf~-~~i~~~~p~~~~r~~Il~~~~~~----~~~~~~~~l~~la~~~~g-- 685 (764)
...++.+|++||.+ +.+++.+.+ ||. +.+++++++.++..+|++..+.. ..+ .+..+..++..+..
T Consensus 160 -~~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 235 (386)
T 2qby_A 160 -NKSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVL-PDNVIKLCAALAAREH 235 (386)
T ss_dssp -CC--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCS-CHHHHHHHHHHHHHTT
T ss_pred -CCCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCC-CHHHHHHHHHHHHHhc
Confidence 34578888889877 467888877 775 59999999999999999987753 222 22335566666541
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 004267 686 FSGADITEICQRACKYAIR 704 (764)
Q Consensus 686 ~sg~di~~~~~~a~~~a~~ 704 (764)
.+.+.+.++|+.|+..|..
T Consensus 236 G~~r~~~~ll~~a~~~a~~ 254 (386)
T 2qby_A 236 GDARRALDLLRVSGEIAER 254 (386)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 4667777888888766553
No 104
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.59 E-value=1.5e-13 Score=178.92 Aligned_cols=174 Identities=20% Similarity=0.374 Sum_probs=115.0
Q ss_pred CCCCcceeeeCCCCCChhHHH-HHHHHHhCCeeEEEecccchhcccCcchHHHHHHHHHHh---------------hCCC
Q 004267 512 MSPSKGVLFYGPPGCGKTLLA-KAIANECQANFISVKGPELLTMWFGESEANVREIFDKAR---------------QSAP 575 (764)
Q Consensus 512 ~~~~~gill~GppGtGKT~la-k~lA~~~~~~~i~v~~~~l~~~~~g~se~~i~~~f~~a~---------------~~~p 575 (764)
+...+++||+||||||||++| ++++...+..++.++.+... +...+...++..- ...+
T Consensus 1264 l~~~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~t------s~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~ 1337 (2695)
T 4akg_A 1264 LNSKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDT------TTEHILSALHRHTNYVTTSKGLTLLPKSDIKN 1337 (2695)
T ss_dssp HHHTCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTC------CHHHHHHHHHHHBCCEEETTTEEEEEBSSSSC
T ss_pred HHCCCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCC------CHHHHHHHHHHHhhhccccCCccccCCCCCce
Confidence 345678999999999999999 55555567788888876542 2234444444320 2235
Q ss_pred eEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCC--------CCcEEEEecCCCCC-----CCCccCCCCCc
Q 004267 576 CVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSA--------KKTVFIIGATNRPD-----IIDPALLRPGR 642 (764)
Q Consensus 576 ~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~--------~~~v~vi~aTn~~~-----~ld~allrpgR 642 (764)
+|+|+||++.-...+. +.....+++.+++ +..++.. ..++.+|||||+|. .|+|+++| |
T Consensus 1338 ~VlFiDEinmp~~d~y-----g~q~~lelLRq~l-e~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR--r 1409 (2695)
T 4akg_A 1338 LVLFCDEINLPKLDKY-----GSQNVVLFLRQLM-EKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR--H 1409 (2695)
T ss_dssp EEEEEETTTCSCCCSS-----SCCHHHHHHHHHH-HTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--T
T ss_pred EEEEeccccccccccc-----CchhHHHHHHHHH-hcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh--e
Confidence 7999999987433321 1233456666665 3333211 13589999999994 89999999 9
Q ss_pred cceEEeecCCCHHHHHHHHHHHhccC-CCCCccc--HHHHH-----------HH-------CCCCCHHHHHHHHHHHHH
Q 004267 643 LDQLIYIPLPDEDSRHQIFKACLRKS-PVSKDVD--LRALA-----------KY-------TQGFSGADITEICQRACK 700 (764)
Q Consensus 643 f~~~i~~~~p~~~~r~~Il~~~~~~~-~~~~~~~--l~~la-----------~~-------~~g~sg~di~~~~~~a~~ 700 (764)
| .+++++.|+.+++..|++.+++.. ....++. ...++ +. -.-|+-+||..+++-...
T Consensus 1410 f-~vi~i~~P~~~~l~~I~~~il~~~l~~~~~v~~~~~~lv~ati~~y~~v~~~~~~~~k~HY~FnlRDLsrv~qGll~ 1487 (2695)
T 4akg_A 1410 A-AILYLGYPSGKSLSQIYEIYYKAIFKLVPEFRSYTEPFARASVHLYNECKARYSTGLQSHYLFSPRELTRLVRGVYT 1487 (2695)
T ss_dssp E-EEEECCCCTTTHHHHHHHHHHHHHTTSSGGGGGGHHHHHHHHHHHHHHHHHHSCTTTCTTCCCCHHHHHHHHHHHHH
T ss_pred e-eEEEeCCCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccCHHHHHHHHHHHHh
Confidence 9 799999999999999999888543 1222211 11111 11 124899999999876554
No 105
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.59 E-value=2.1e-15 Score=182.29 Aligned_cols=201 Identities=22% Similarity=0.321 Sum_probs=132.4
Q ss_pred CccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHh----------CCeeEEE
Q 004267 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISV 546 (764)
Q Consensus 477 ~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~----------~~~~i~v 546 (764)
.-.++++.|.+...+.+.+.+. .....+++|+||||||||++|+++|..+ +.+++.+
T Consensus 166 ~~~ld~viGr~~~i~~l~~~l~-------------~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 232 (854)
T 1qvr_A 166 EGKLDPVIGRDEEIRRVIQILL-------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSL 232 (854)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHH-------------CSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEE
T ss_pred cCCCcccCCcHHHHHHHHHHHh-------------cCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEe
Confidence 3457788888776665554331 1234579999999999999999999987 7889999
Q ss_pred ecccch--hcccCcchHHHHHHHHHHhhC-CCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEE
Q 004267 547 KGPELL--TMWFGESEANVREIFDKARQS-APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFI 623 (764)
Q Consensus 547 ~~~~l~--~~~~g~se~~i~~~f~~a~~~-~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~v 623 (764)
+++.+. .+|.|+.+..++.+|+.+... .|+|+||||++.+.+.++.. ....+.+.|...++ ...+.+
T Consensus 233 ~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~------g~~~~~~~L~~~l~----~~~i~~ 302 (854)
T 1qvr_A 233 QMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAE------GAVDAGNMLKPALA----RGELRL 302 (854)
T ss_dssp CC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------------HHHHH----TTCCCE
T ss_pred ehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCcc------chHHHHHHHHHHHh----CCCeEE
Confidence 998887 578899999999999999875 68999999999998654321 11223334444443 345778
Q ss_pred EecCCCCC----CCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccC----CCC-CcccHHHHHHH-----CCCCCHH
Q 004267 624 IGATNRPD----IIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKS----PVS-KDVDLRALAKY-----TQGFSGA 689 (764)
Q Consensus 624 i~aTn~~~----~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~----~~~-~~~~l~~la~~-----~~g~sg~ 689 (764)
|++||.++ .+|+++.| ||+. |+|++|+.+++.+|++.++.+. .+. .+..+..++.. ++.|.+.
T Consensus 303 I~at~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~ 379 (854)
T 1qvr_A 303 IGATTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPD 379 (854)
T ss_dssp EEEECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHH
T ss_pred EEecCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChH
Confidence 89998775 48999999 9995 9999999999999998777532 221 22334555554 3467788
Q ss_pred HHHHHHHHHHHHHH
Q 004267 690 DITEICQRACKYAI 703 (764)
Q Consensus 690 di~~~~~~a~~~a~ 703 (764)
....++.+|+..+.
T Consensus 380 kai~lldea~a~~~ 393 (854)
T 1qvr_A 380 KAIDLIDEAAARLR 393 (854)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888876654
No 106
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.58 E-value=3.4e-15 Score=146.28 Aligned_cols=160 Identities=23% Similarity=0.392 Sum_probs=116.5
Q ss_pred CCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCeEEE
Q 004267 203 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFC 272 (764)
Q Consensus 203 ~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l----------~~~~i~ 272 (764)
.+..++++.|.+++++.+.+.+.. ..+.+++|+||||||||+++++++..+ +..++.
T Consensus 17 ~~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~ 83 (195)
T 1jbk_A 17 EQGKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLA 83 (195)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEE
T ss_pred hhccccccccchHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEE
Confidence 345678899999998888777643 335789999999999999999999986 677888
Q ss_pred Eechhhh--hhccchhHHHHHHHHHHHHh-cCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEE
Q 004267 273 INGPEIM--SKLAGESESNLRKAFEEAEK-NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIG 349 (764)
Q Consensus 273 v~~~~l~--~~~~g~~~~~l~~vf~~a~~-~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~ 349 (764)
+++..+. ..+.+.....+..+++.+.. ..+.+|||||++.+.+.+..... ..+...+...++ ..++.+|+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~---~~~~~~l~~~~~----~~~~~~i~ 156 (195)
T 1jbk_A 84 LDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGA---MDAGNMLKPALA----RGELHCVG 156 (195)
T ss_dssp ECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------C---CCCHHHHHHHHH----TTSCCEEE
T ss_pred eeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccch---HHHHHHHHHhhc----cCCeEEEE
Confidence 8888776 34556666778888886654 55889999999999765421110 111223333332 34677888
Q ss_pred ecCCCC-----CCChhhhccCCcceEEEecCCChHHHHHHH
Q 004267 350 ATNRPN-----SIDPALRRFGRFDREIDIGVPDEVGRLEVL 385 (764)
Q Consensus 350 atn~~~-----~ld~al~r~~rf~~~i~i~~p~~~~R~~il 385 (764)
+|+.+. .+++++.+ ||. .+.++.|+.+++.+|+
T Consensus 157 ~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 157 ATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp EECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred eCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 888765 78999998 897 6899999999998765
No 107
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.56 E-value=6.9e-14 Score=150.57 Aligned_cols=194 Identities=24% Similarity=0.354 Sum_probs=134.4
Q ss_pred cccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccchhcccCc
Q 004267 479 SWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGE 558 (764)
Q Consensus 479 ~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~~~~~g~ 558 (764)
.++++.|.+.+++.+...+.... . .-.++..++|+|||||||||||+++|++++.++...+++.+.
T Consensus 23 ~l~~~~g~~~~~~~l~~~i~~~~-------~-~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~------ 88 (334)
T 1in4_A 23 SLDEFIGQENVKKKLSLALEAAK-------M-RGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLV------ 88 (334)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHH-------H-HTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCC------
T ss_pred cHHHccCcHHHHHHHHHHHHHHH-------h-cCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhc------
Confidence 46677777777766654432110 0 012346699999999999999999999999988877776542
Q ss_pred chHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCC----------------CCCcEE
Q 004267 559 SEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS----------------AKKTVF 622 (764)
Q Consensus 559 se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~----------------~~~~v~ 622 (764)
....+..++... ...+|+|+||++.+... .. +.|+..|+... ....+.
T Consensus 89 ~~~~l~~~~~~~--~~~~v~~iDE~~~l~~~-----------~~---e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~ 152 (334)
T 1in4_A 89 KQGDMAAILTSL--ERGDVLFIDEIHRLNKA-----------VE---ELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFT 152 (334)
T ss_dssp SHHHHHHHHHHC--CTTCEEEEETGGGCCHH-----------HH---HHHHHHHHTSCCCC---------------CCCE
T ss_pred CHHHHHHHHHHc--cCCCEEEEcchhhcCHH-----------HH---HHHHHHHHhcccceeeccCcccccccccCCCeE
Confidence 123344444432 34579999999987531 12 22232232110 012467
Q ss_pred EEecCCCCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCCC-cccHHHHHHHCCCCCHHHHHHHHHHHHHH
Q 004267 623 IIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSK-DVDLRALAKYTQGFSGADITEICQRACKY 701 (764)
Q Consensus 623 vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~-~~~l~~la~~~~g~sg~di~~~~~~a~~~ 701 (764)
++++||++..|++++.+ ||...+.+++|+.+++.+|++...+..++.- +..+..+|+.+.| +.+.+.++++.+...
T Consensus 153 li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G-~~R~a~~ll~~~~~~ 229 (334)
T 1in4_A 153 LVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRG-TPRIAIRLTKRVRDM 229 (334)
T ss_dssp EEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT-CHHHHHHHHHHHHHH
T ss_pred EEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHHHHH
Confidence 77899999999999998 9998999999999999999998886655442 2336778888776 678888999888776
Q ss_pred HHHH
Q 004267 702 AIRE 705 (764)
Q Consensus 702 a~~~ 705 (764)
|..+
T Consensus 230 a~~~ 233 (334)
T 1in4_A 230 LTVV 233 (334)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 6543
No 108
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.55 E-value=7.3e-14 Score=149.58 Aligned_cols=193 Identities=23% Similarity=0.337 Sum_probs=137.3
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhhh
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~ 280 (764)
.+.+.+|+++.|.+..++.+.+.+..... . -..+.+++|+||||||||++|++++..++.+++.++++.+..
T Consensus 5 ~~~p~~~~~~ig~~~~~~~l~~~l~~~~~-------~-~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~ 76 (324)
T 1hqc_A 5 ALRPKTLDEYIGQERLKQKLRVYLEAAKA-------R-KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK 76 (324)
T ss_dssp CCCCCSTTTCCSCHHHHHHHHHHHHHHHH-------H-CSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS
T ss_pred ccCcccHHHhhCHHHHHHHHHHHHHHHHc-------c-CCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC
Confidence 34556889999999999999888764210 0 124568999999999999999999999999999998876522
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhccc----------------CCCe
Q 004267 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK----------------SRAH 344 (764)
Q Consensus 281 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~----------------~~~~ 344 (764)
...+...|..+ ...+++|||||++.+.+. ....|+..++... ...+
T Consensus 77 ------~~~l~~~l~~~-~~~~~~l~lDEi~~l~~~-----------~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~ 138 (324)
T 1hqc_A 77 ------PGDLAAILANS-LEEGDILFIDEIHRLSRQ-----------AEEHLYPAMEDFVMDIVIGQGPAARTIRLELPR 138 (324)
T ss_dssp ------HHHHHHHHTTT-CCTTCEEEETTTTSCCHH-----------HHHHHHHHHHHSEEEECCSSSSSCCCEEEECCC
T ss_pred ------hHHHHHHHHHh-ccCCCEEEEECCcccccc-----------hHHHHHHHHHhhhhHHhccccccccccccCCCC
Confidence 22222233221 145789999999987521 2244555554422 1135
Q ss_pred EEEEEecCCCCCCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCC-CchhhhHHhhhcCCCchHHHHHHHHHH
Q 004267 345 VIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTEA 422 (764)
Q Consensus 345 v~vI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~a 422 (764)
+.+|++||.+..+++++.+ ||+..+.++.|+.+++.++++.++...... ++..+..++..+.|+. ..+..++..+
T Consensus 139 ~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~-r~l~~~l~~~ 214 (324)
T 1hqc_A 139 FTLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTM-RVAKRLFRRV 214 (324)
T ss_dssp CEEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCH-HHHHHHHHHH
T ss_pred EEEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCH-HHHHHHHHHH
Confidence 7899999999999999887 898899999999999999998887654432 3345778888887765 4555555544
No 109
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.54 E-value=3.6e-14 Score=159.67 Aligned_cols=186 Identities=26% Similarity=0.373 Sum_probs=131.2
Q ss_pred CCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCeEEE
Q 004267 203 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFC 272 (764)
Q Consensus 203 ~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l----------~~~~i~ 272 (764)
.+-.++++.|.++.++.+.+.+.. ....++||+||||||||++++++|..+ +..++.
T Consensus 175 r~~~ld~iiGr~~~i~~l~~~l~r-------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~ 241 (468)
T 3pxg_A 175 KEDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMT 241 (468)
T ss_dssp TSSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEEC
T ss_pred hcCCCCCccCcHHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE
Confidence 344678899999999998887754 234589999999999999999999997 667887
Q ss_pred EechhhhhhccchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecC
Q 004267 273 INGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATN 352 (764)
Q Consensus 273 v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn 352 (764)
+++. ..+.|+.+..++.+|..+....+.||||| + .. . ..+.+.....++.+.+|++||
T Consensus 242 l~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD---------~-~~-----~----a~~~L~~~L~~g~v~vI~at~ 299 (468)
T 3pxg_A 242 LDMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID---------A-AI-----D----ASNILKPSLARGELQCIGATT 299 (468)
T ss_dssp C-------------CTTHHHHHHHHHTCCCCEEEEC---------C------------------CCCTTSSSCEEEEECC
T ss_pred eeCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe---------C-ch-----h----HHHHHHHhhcCCCEEEEecCC
Confidence 7776 66778888889999999998889999999 0 00 0 112223333456889999999
Q ss_pred CCC-----CCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCC-----CCchhhhHHhhhcCCCchH-----HHHH
Q 004267 353 RPN-----SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-----SDDVDLERIAKDTHGYVGA-----DLAA 417 (764)
Q Consensus 353 ~~~-----~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l-----~~~~~l~~la~~t~g~~~~-----dl~~ 417 (764)
.++ .+++++++ ||. .+.++.|+.+++.+|++.+...+.. ..+..+..++..+++|... ....
T Consensus 300 ~~e~~~~~~~~~al~~--Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ 376 (468)
T 3pxg_A 300 LDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAID 376 (468)
T ss_dssp TTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHH
T ss_pred HHHHHHHhhcCHHHHH--hCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHH
Confidence 887 68999999 996 4999999999999999977655321 1334566777776666543 6667
Q ss_pred HHHHHHHHH
Q 004267 418 LCTEAALQC 426 (764)
Q Consensus 418 l~~~a~~~~ 426 (764)
++.+++...
T Consensus 377 ll~~a~~~~ 385 (468)
T 3pxg_A 377 LIDEAGSKV 385 (468)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777666433
No 110
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=99.54 E-value=3.9e-14 Score=178.40 Aligned_cols=117 Identities=20% Similarity=0.275 Sum_probs=85.3
Q ss_pred cCCCCcceeeeCCCCCChhHHHHHHHHHh---CCeeEEEecccc----hhcccC------------cchHHHHHHHHHHh
Q 004267 511 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPEL----LTMWFG------------ESEANVREIFDKAR 571 (764)
Q Consensus 511 ~~~~~~gill~GppGtGKT~lak~lA~~~---~~~~i~v~~~~l----~~~~~g------------~se~~i~~~f~~a~ 571 (764)
|+.++++++|+||||||||+||.+++.+. +.....++..+. ..+..| .+++.++.+++.++
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr 1502 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1502 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHh
Confidence 57888899999999999999999998875 333444443322 122223 55788899999999
Q ss_pred hCCCeEEEEecccchhhcc---CCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecC
Q 004267 572 QSAPCVLFFDELDSIATQR---GSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGAT 627 (764)
Q Consensus 572 ~~~p~iifiDEid~l~~~r---~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aT 627 (764)
...|++|||||++.+.+.+ +...++..+...|+++++|.+|.+.....+++||++-
T Consensus 1503 ~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~tN 1561 (2050)
T 3cmu_A 1503 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 1561 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred cCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEEEEc
Confidence 9999999999999888753 3221112222578999999999998777777776654
No 111
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.54 E-value=4.6e-14 Score=154.93 Aligned_cols=222 Identities=15% Similarity=0.131 Sum_probs=149.0
Q ss_pred ccccccchhhhhcccceeeccCCChhhhhhccCCCCc--ceeeeCCCCCChhHHHHHHHHHh----CCeeEEEecccchh
Q 004267 480 WEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSK--GVLFYGPPGCGKTLLAKAIANEC----QANFISVKGPELLT 553 (764)
Q Consensus 480 ~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~--gill~GppGtGKT~lak~lA~~~----~~~~i~v~~~~l~~ 553 (764)
.+++.|.+...+.+.+.+..... + ..+. .++|+||||||||++++++++.+ +..++.+++....+
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~--------~-~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~ 86 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLR--------N-PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRN 86 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHH--------S-TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCS
T ss_pred CCCCCChHHHHHHHHHHHHHHHc--------C-CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCC
Confidence 36678888777776655432110 1 2223 79999999999999999999987 57888888655331
Q ss_pred c---------c-------cCcchHH-HHHHHHHHh-hCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCC
Q 004267 554 M---------W-------FGESEAN-VREIFDKAR-QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGM 615 (764)
Q Consensus 554 ~---------~-------~g~se~~-i~~~f~~a~-~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~ 615 (764)
. . .|.+... ...+..... ...|.+||+||++.+. ...+..|+..++..
T Consensus 87 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~--------------~~~~~~L~~~~~~~ 152 (389)
T 1fnn_A 87 FTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLA--------------PDILSTFIRLGQEA 152 (389)
T ss_dssp HHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSC--------------HHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccc--------------hHHHHHHHHHHHhC
Confidence 0 0 1112222 222222222 2458899999999871 34566777766544
Q ss_pred CC--CCcEEEEecCCCC---CCCCccCCCCCccce-EEeecCCCHHHHHHHHHHHhcc---CCCCCcccHHHHHHHCC--
Q 004267 616 SA--KKTVFIIGATNRP---DIIDPALLRPGRLDQ-LIYIPLPDEDSRHQIFKACLRK---SPVSKDVDLRALAKYTQ-- 684 (764)
Q Consensus 616 ~~--~~~v~vi~aTn~~---~~ld~allrpgRf~~-~i~~~~p~~~~r~~Il~~~~~~---~~~~~~~~l~~la~~~~-- 684 (764)
.. ..++.+|++||.+ +.+++.+.+ ||.. .+.|++++.++..++++..+.. ...-++..+..+++.+.
T Consensus 153 ~~~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 230 (389)
T 1fnn_A 153 DKLGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQ 230 (389)
T ss_dssp HHHSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBS
T ss_pred CCCCcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhc
Confidence 32 1478888999888 678888877 8875 8999999999999999988754 12223345777888884
Q ss_pred ------CCCHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCCCccccccccccccccccHHHHHHHHHhcCCCC
Q 004267 685 ------GFSGADITEICQRACKYAIRENIEKDIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRSI 752 (764)
Q Consensus 685 ------g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~s~ 752 (764)
+-+.+.+.++|+.|+..|..+. ...|+.+|+.+|+..+..+.
T Consensus 231 ~~~~~~~G~~r~~~~~l~~a~~~a~~~~--------------------------~~~i~~~~v~~~~~~~~~~~ 278 (389)
T 1fnn_A 231 TPLDTNRGDARLAIDILYRSAYAAQQNG--------------------------RKHIAPEDVRKSSKEVLFGI 278 (389)
T ss_dssp STTCTTSCCHHHHHHHHHHHHHHHHHTT--------------------------CSSCCHHHHHHHHHHHSCCC
T ss_pred ccCCCCCCcHHHHHHHHHHHHHHHHHhC--------------------------CCCcCHHHHHHHHHHHhhhh
Confidence 2367888999998887775432 23577777777777665543
No 112
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.53 E-value=2e-13 Score=146.32 Aligned_cols=195 Identities=17% Similarity=0.302 Sum_probs=129.8
Q ss_pred CCCccccc-C--hHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCeEEEEechh
Q 004267 204 EVGYDDVG-G--VRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPE 277 (764)
Q Consensus 204 ~~~~~~i~-G--l~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~ 277 (764)
..+|+++. | .......++.++..|- ..+.+++|+||||||||||++++++.+ +..++.+++.+
T Consensus 7 ~~~f~~fv~g~~~~~a~~~~~~~~~~~~-----------~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~ 75 (324)
T 1l8q_A 7 KYTLENFIVGEGNRLAYEVVKEALENLG-----------SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADD 75 (324)
T ss_dssp TCCSSSCCCCTTTHHHHHHHHHHHHTTT-----------TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCCcccCCCCCcHHHHHHHHHHHHhCcC-----------CCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHH
Confidence 44666664 3 4444555666655431 245689999999999999999999998 88899999988
Q ss_pred hhhhccchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCC--
Q 004267 278 IMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPN-- 355 (764)
Q Consensus 278 l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~-- 355 (764)
+...+.+.........|..... .+++|||||++.+..+. .....++..++........+|+++++.+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~-~~~vL~iDEi~~l~~~~---------~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l 145 (324)
T 1l8q_A 76 FAQAMVEHLKKGTINEFRNMYK-SVDLLLLDDVQFLSGKE---------RTQIEFFHIFNTLYLLEKQIILASDRHPQKL 145 (324)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHH-TCSEEEEECGGGGTTCH---------HHHHHHHHHHHHHHHTTCEEEEEESSCGGGC
T ss_pred HHHHHHHHHHcCcHHHHHHHhc-CCCEEEEcCcccccCCh---------HHHHHHHHHHHHHHHCCCeEEEEecCChHHH
Confidence 7655444333222223333332 47899999999986431 12234555555444445567777777766
Q ss_pred -CCChhhhccCCcc--eEEEecCCChHHHHHHHHHHhcCCCCC-CchhhhHHhhhcCCCchHHHHHHHHHHHH
Q 004267 356 -SIDPALRRFGRFD--REIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTEAAL 424 (764)
Q Consensus 356 -~ld~al~r~~rf~--~~i~i~~p~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~a~~ 424 (764)
.+++.+.+ ||. ..++++. +.+++.++++.++....+. ++..++.++..+ |. .+.+..++..+..
T Consensus 146 ~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g~-~r~l~~~l~~~~~ 213 (324)
T 1l8q_A 146 DGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-KN-VREIEGKIKLIKL 213 (324)
T ss_dssp TTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-SS-HHHHHHHHHHHHH
T ss_pred HHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-CC-HHHHHHHHHHHHH
Confidence 68899987 775 6788999 9999999999887643322 234578888888 54 4556555555443
No 113
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.53 E-value=1.5e-14 Score=155.12 Aligned_cols=184 Identities=20% Similarity=0.198 Sum_probs=129.6
Q ss_pred ccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccchhcccC
Q 004267 478 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFG 557 (764)
Q Consensus 478 v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~~~~~g 557 (764)
.+|+++.|.+.+++.+.+.+.. + ..+..+|++||||||||++|+++|+.++.+++.+++++. +
T Consensus 23 ~~~~~ivg~~~~~~~l~~~l~~-----------~-~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~-----~ 85 (324)
T 3u61_B 23 STIDECILPAFDKETFKSITSK-----------G-KIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDC-----K 85 (324)
T ss_dssp CSTTTSCCCHHHHHHHHHHHHT-----------T-CCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTC-----C
T ss_pred CCHHHHhCcHHHHHHHHHHHHc-----------C-CCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEccccc-----C
Confidence 4678999999998888766541 1 234558889999999999999999999999999998763 2
Q ss_pred cchHHHHHHHHHHhhC-----CCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCCC
Q 004267 558 ESEANVREIFDKARQS-----APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDI 632 (764)
Q Consensus 558 ~se~~i~~~f~~a~~~-----~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ 632 (764)
...++..+...... .+.++|+||+|.+.+ ....+.|+..|+.. ..++.+|++||.++.
T Consensus 86 --~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~-------------~~~~~~L~~~le~~--~~~~~iI~~~n~~~~ 148 (324)
T 3u61_B 86 --IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL-------------AESQRHLRSFMEAY--SSNCSIIITANNIDG 148 (324)
T ss_dssp --HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG-------------HHHHHHHHHHHHHH--GGGCEEEEEESSGGG
T ss_pred --HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc-------------HHHHHHHHHHHHhC--CCCcEEEEEeCCccc
Confidence 44555554443322 568999999999851 22345566655542 246788889999999
Q ss_pred CCccCCCCCccceEEeecCCCHHHHHHHHHHHh-------ccCCCCC-c-ccHHHHHHHCCCCCHHHHHHHHHHHH
Q 004267 633 IDPALLRPGRLDQLIYIPLPDEDSRHQIFKACL-------RKSPVSK-D-VDLRALAKYTQGFSGADITEICQRAC 699 (764)
Q Consensus 633 ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~-------~~~~~~~-~-~~l~~la~~~~g~sg~di~~~~~~a~ 699 (764)
+++++.+ ||. .+.|++|+.++|.+|++.++ .+.++.- + ..+..+++.+.| +.+++.+.++.++
T Consensus 149 l~~~l~s--R~~-~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g-d~R~a~~~L~~~~ 220 (324)
T 3u61_B 149 IIKPLQS--RCR-VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFP-DFRKTIGELDSYS 220 (324)
T ss_dssp SCTTHHH--HSE-EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCS-CTTHHHHHHHHHG
T ss_pred cCHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCC-CHHHHHHHHHHHh
Confidence 9999998 995 79999999999877765543 2223322 2 446777877654 3444444554443
No 114
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.52 E-value=6.1e-14 Score=151.98 Aligned_cols=187 Identities=19% Similarity=0.195 Sum_probs=129.7
Q ss_pred CccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhC------CeeEEEeccc
Q 004267 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ------ANFISVKGPE 550 (764)
Q Consensus 477 ~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~------~~~i~v~~~~ 550 (764)
...|+++.|.+.+++.+...+.. + ...+++|+||||||||++|+++|+.++ ..++.+++++
T Consensus 33 p~~~~~i~g~~~~~~~l~~~l~~-----------~--~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~ 99 (353)
T 1sxj_D 33 PKNLDEVTAQDHAVTVLKKTLKS-----------A--NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASD 99 (353)
T ss_dssp CSSTTTCCSCCTTHHHHHHHTTC-----------T--TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSS
T ss_pred CCCHHHhhCCHHHHHHHHHHHhc-----------C--CCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcccc
Confidence 34688999999988877665432 1 123499999999999999999999853 4577787766
Q ss_pred chhcccCcchHHHHHHHHHHh----------------hCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcC
Q 004267 551 LLTMWFGESEANVREIFDKAR----------------QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDG 614 (764)
Q Consensus 551 l~~~~~g~se~~i~~~f~~a~----------------~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~ 614 (764)
..+ ...++..+.... ...+.|+|+||++.+.. ...+.|+..|+.
T Consensus 100 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~--------------~~~~~Ll~~le~ 159 (353)
T 1sxj_D 100 ERG------ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTA--------------DAQSALRRTMET 159 (353)
T ss_dssp CCC------HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCH--------------HHHHHHHHHHHH
T ss_pred ccc------hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCH--------------HHHHHHHHHHHh
Confidence 421 122222221111 13457999999998743 234556666665
Q ss_pred CCCCCcEEEEecCCCCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCCCCHHHHHH
Q 004267 615 MSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITE 693 (764)
Q Consensus 615 ~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~~g~sg~di~~ 693 (764)
.. .+..+|++||.++.+++++.+ |+. .+.|++|+.++...+++..+++.++. ++..+..+++.+.| +.+.+.+
T Consensus 160 ~~--~~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~~~~ 233 (353)
T 1sxj_D 160 YS--GVTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAG-DLRRGIT 233 (353)
T ss_dssp TT--TTEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSS-CHHHHHH
T ss_pred cC--CCceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHHHHHH
Confidence 43 345566688999999999998 887 89999999999999999888665443 23457788888875 5666667
Q ss_pred HHHHHHHHH
Q 004267 694 ICQRACKYA 702 (764)
Q Consensus 694 ~~~~a~~~a 702 (764)
+++.++..+
T Consensus 234 ~l~~~~~~~ 242 (353)
T 1sxj_D 234 LLQSASKGA 242 (353)
T ss_dssp HHHHTHHHH
T ss_pred HHHHHHHhc
Confidence 776666543
No 115
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.51 E-value=7.8e-15 Score=143.22 Aligned_cols=151 Identities=21% Similarity=0.343 Sum_probs=107.8
Q ss_pred ccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHh----------CCeeEEEe
Q 004267 478 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISVK 547 (764)
Q Consensus 478 v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~----------~~~~i~v~ 547 (764)
..|+++.|.+...+.+.+.+.. ....+++|+||||||||++|++++..+ +.+++.++
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (187)
T 2p65_A 19 GKLDPVIGRDTEIRRAIQILSR-------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLD 85 (187)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEEC
T ss_pred cccchhhcchHHHHHHHHHHhC-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEe
Confidence 3467777877766655543321 234579999999999999999999986 77888888
Q ss_pred cccch--hcccCcchHHHHHHHHHHhhC-CCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEE
Q 004267 548 GPELL--TMWFGESEANVREIFDKARQS-APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFII 624 (764)
Q Consensus 548 ~~~l~--~~~~g~se~~i~~~f~~a~~~-~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi 624 (764)
...+. ..+.|.....+..++..+... .++++||||++.+.+.+.... . ... +.+.|+..++ ..++++|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~-~-~~~---~~~~l~~~~~----~~~~~ii 156 (187)
T 2p65_A 86 LSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAE-G-ALD---AGNILKPMLA----RGELRCI 156 (187)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCT-T-SCC---THHHHHHHHH----TTCSCEE
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccc-c-chH---HHHHHHHHHh----cCCeeEE
Confidence 77765 335566677788888887665 678999999999976543111 1 112 2333333343 2457889
Q ss_pred ecCCCCC-----CCCccCCCCCccceEEeecCCC
Q 004267 625 GATNRPD-----IIDPALLRPGRLDQLIYIPLPD 653 (764)
Q Consensus 625 ~aTn~~~-----~ld~allrpgRf~~~i~~~~p~ 653 (764)
++||.++ .+|+++++ ||+. +++++|+
T Consensus 157 ~~~~~~~~~~~~~~~~~l~~--R~~~-i~i~~p~ 187 (187)
T 2p65_A 157 GATTVSEYRQFIEKDKALER--RFQQ-ILVEQPS 187 (187)
T ss_dssp EEECHHHHHHHTTTCHHHHH--HEEE-EECCSCC
T ss_pred EecCHHHHHHHHhccHHHHH--hcCc-ccCCCCC
Confidence 9998875 68999999 9994 9999986
No 116
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.51 E-value=2.6e-13 Score=151.38 Aligned_cols=198 Identities=19% Similarity=0.303 Sum_probs=131.9
Q ss_pred CCCccccc-Ch--HHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHh-----CCeEEEEec
Q 004267 204 EVGYDDVG-GV--RKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET-----GAFFFCING 275 (764)
Q Consensus 204 ~~~~~~i~-Gl--~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l-----~~~~i~v~~ 275 (764)
..+|+++. |- ......+..+...| + . +.+++|+||||||||||++++++.+ +..++.+++
T Consensus 101 ~~tfd~fv~g~~n~~a~~~~~~~a~~~----------~-~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~ 168 (440)
T 2z4s_A 101 DYTFENFVVGPGNSFAYHAALEVAKHP----------G-R-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_dssp TCSGGGCCCCTTTHHHHHHHHHHHHST----------T-S-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEH
T ss_pred CCChhhcCCCCchHHHHHHHHHHHhCC----------C-C-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH
Confidence 44777765 43 33344444444432 1 1 5689999999999999999999988 778899998
Q ss_pred hhhhhhccchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCC
Q 004267 276 PEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPN 355 (764)
Q Consensus 276 ~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~ 355 (764)
.++...+.+.........|.......+++|||||++.+..+. .....|+..++.+...+..+|+++.+.+.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~---------~~q~~l~~~l~~l~~~~~~iIitt~~~~~ 239 (440)
T 2z4s_A 169 EKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKT---------GVQTELFHTFNELHDSGKQIVICSDREPQ 239 (440)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSCH---------HHHHHHHHHHHHHHTTTCEEEEEESSCGG
T ss_pred HHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCCh---------HHHHHHHHHHHHHHHCCCeEEEEECCCHH
Confidence 877554433222211223333333368899999999987531 12244555555554555667776666555
Q ss_pred C---CChhhhccCCcc--eEEEecCCChHHHHHHHHHHhc--CCCCCCchhhhHHhhhcCCCchHHHHHHHHHHHHHH
Q 004267 356 S---IDPALRRFGRFD--REIDIGVPDEVGRLEVLRIHTK--NMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQC 426 (764)
Q Consensus 356 ~---ld~al~r~~rf~--~~i~i~~p~~~~R~~il~~~~~--~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~ 426 (764)
. +++.+++ ||. ..+.++.|+.++|.+|++..+. ++.+.++ .+..++..+.| ..+++..++..+...+
T Consensus 240 ~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e-~l~~la~~~~g-n~R~l~~~L~~~~~~a 313 (440)
T 2z4s_A 240 KLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEE-VLNFVAENVDD-NLRRLRGAIIKLLVYK 313 (440)
T ss_dssp GCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTT-HHHHHHHHCCS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 4 7888887 665 6789999999999999987765 3444444 47888888876 4566777776665543
No 117
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.51 E-value=1e-14 Score=163.85 Aligned_cols=173 Identities=15% Similarity=0.201 Sum_probs=106.8
Q ss_pred cceeeeCCCCCChhHHHHHHHHHhCC--eeEEEec-----ccchhcccCcchHHHHHHHHHHhhC---CCeEEEEecccc
Q 004267 516 KGVLFYGPPGCGKTLLAKAIANECQA--NFISVKG-----PELLTMWFGESEANVREIFDKARQS---APCVLFFDELDS 585 (764)
Q Consensus 516 ~gill~GppGtGKT~lak~lA~~~~~--~~i~v~~-----~~l~~~~~g~se~~i~~~f~~a~~~---~p~iifiDEid~ 585 (764)
.++||+||||||||++|+++|..++. +|..+.+ +++++.+.+..... ...|..+... .++|+|+|||+.
T Consensus 42 ~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~~~~~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~r 120 (500)
T 3nbx_X 42 ESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKD-EGRYERLTSGYLPEAEIVFLDEIWK 120 (500)
T ss_dssp CEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCCBC-----------CBCCTTSGGGCSEEEEESGGG
T ss_pred CeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCcccHHHHhh-chhHHhhhccCCCcceeeeHHhHhh
Confidence 46999999999999999999998743 4555443 34444333322211 2233323222 467999999976
Q ss_pred hhhccCCCCCCCCcchHHHHHHHHHhhcCCC--------CCCcEEEEecCCCCCC---CCccCCCCCccceEEeecCCCH
Q 004267 586 IATQRGSSVGDAGGAADRVLNQLLTEMDGMS--------AKKTVFIIGATNRPDI---IDPALLRPGRLDQLIYIPLPDE 654 (764)
Q Consensus 586 l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~--------~~~~v~vi~aTn~~~~---ld~allrpgRf~~~i~~~~p~~ 654 (764)
+ ...+.+.|+..|+... .....++|+|||.+.. +.+++++ ||...+++|+|+.
T Consensus 121 ~--------------~~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~lpe~~~~~~aLld--RF~~~i~v~~p~~ 184 (500)
T 3nbx_X 121 A--------------GPAILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELPEADSSLEALYD--RMLIRLWLDKVQD 184 (500)
T ss_dssp C--------------CHHHHHHHHHHHHSSEEECSSSEEECCCCEEEEEESSCCCTTCTTHHHHT--TCCEEEECCSCCC
T ss_pred h--------------cHHHHHHHHHHHHHHhccCCCCcCCcchhhhhhccccCCCccccHHHHHH--HHHHHHHHHHhhh
Confidence 4 2456777887775321 1122256777775322 3458888 9999999999986
Q ss_pred -HHHHHHHHHHhccC-------------------------CCCCcccHHHHHHH---------CCCCCHHHHHHHHHHHH
Q 004267 655 -DSRHQIFKACLRKS-------------------------PVSKDVDLRALAKY---------TQGFSGADITEICQRAC 699 (764)
Q Consensus 655 -~~r~~Il~~~~~~~-------------------------~~~~~~~l~~la~~---------~~g~sg~di~~~~~~a~ 699 (764)
+++..|++.+.... .++++ -++.++.. ..|.|.+.+..+++.|.
T Consensus 185 ~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~-v~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~ 263 (500)
T 3nbx_X 185 KANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDH-VFELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQ 263 (500)
T ss_dssp HHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHH-HHHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHH
T ss_pred hhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchH-HHHHHHHHHHHhhcCCCCCccchhHHHHHHHHHH
Confidence 78899998765321 11111 12333332 24788999888888877
Q ss_pred HHHHHHH
Q 004267 700 KYAIREN 706 (764)
Q Consensus 700 ~~a~~~~ 706 (764)
..|..+.
T Consensus 264 A~A~l~g 270 (500)
T 3nbx_X 264 ASAFFSG 270 (500)
T ss_dssp HHHHHTT
T ss_pred HHHhhcC
Confidence 7766543
No 118
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.50 E-value=3.6e-14 Score=138.46 Aligned_cols=152 Identities=25% Similarity=0.412 Sum_probs=110.3
Q ss_pred CCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCeEEEE
Q 004267 204 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFCI 273 (764)
Q Consensus 204 ~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l----------~~~~i~v 273 (764)
+-.++++.|.+++++.+.+.+.. ..+.+++|+||||||||+++++++..+ +..++.+
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~ 84 (187)
T 2p65_A 18 AGKLDPVIGRDTEIRRAIQILSR-------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSL 84 (187)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEE
T ss_pred ccccchhhcchHHHHHHHHHHhC-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEE
Confidence 44678899999998888777643 335689999999999999999999987 6778888
Q ss_pred echhhhh--hccchhHHHHHHHHHHHHhc-CCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEe
Q 004267 274 NGPEIMS--KLAGESESNLRKAFEEAEKN-APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGA 350 (764)
Q Consensus 274 ~~~~l~~--~~~g~~~~~l~~vf~~a~~~-~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~a 350 (764)
++..+.. .+.+.....+..++..+... .|.+|||||++.+.+.+...... ..+...|...++ ...+.+|++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~--~~~~~~l~~~~~----~~~~~ii~~ 158 (187)
T 2p65_A 85 DLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGA--LDAGNILKPMLA----RGELRCIGA 158 (187)
T ss_dssp CHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTS--CCTHHHHHHHHH----TTCSCEEEE
T ss_pred eHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccc--hHHHHHHHHHHh----cCCeeEEEe
Confidence 8777653 34455666778888877665 68899999999998554311100 112233333333 356778888
Q ss_pred cCCCC-----CCChhhhccCCcceEEEecCCC
Q 004267 351 TNRPN-----SIDPALRRFGRFDREIDIGVPD 377 (764)
Q Consensus 351 tn~~~-----~ld~al~r~~rf~~~i~i~~p~ 377 (764)
++.+. .+++++++ ||.. +.++.|+
T Consensus 159 ~~~~~~~~~~~~~~~l~~--R~~~-i~i~~p~ 187 (187)
T 2p65_A 159 TTVSEYRQFIEKDKALER--RFQQ-ILVEQPS 187 (187)
T ss_dssp ECHHHHHHHTTTCHHHHH--HEEE-EECCSCC
T ss_pred cCHHHHHHHHhccHHHHH--hcCc-ccCCCCC
Confidence 88764 68999998 8975 8888875
No 119
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=99.49 E-value=4.8e-14 Score=120.07 Aligned_cols=83 Identities=18% Similarity=0.363 Sum_probs=67.6
Q ss_pred CHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCCCccccccccccc
Q 004267 653 DEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRRDNPEAMDEDAAEDE 732 (764)
Q Consensus 653 ~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (764)
|.++|.+||+.++++.++..++|+..||+.|+|||||||.++|++|++.|+++.
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~-------------------------- 55 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRAR-------------------------- 55 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHS--------------------------
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhc--------------------------
Confidence 567999999999999999999999999999999999999999999999999875
Q ss_pred cccccHHHHHHHHHhcCCCCCCcccccccc
Q 004267 733 VSEIKAAHFEESMKFARRSICSDAAAVPRY 762 (764)
Q Consensus 733 ~~~i~~~~f~~a~~~~~~s~~~~~~~~~~~ 762 (764)
...|+++||+.|++++.++. +.......|
T Consensus 56 ~~~i~~~df~~Al~~v~~~~-~~~~~~~~y 84 (88)
T 3vlf_B 56 RKVATEKDFLKAVDKVISGY-KKFSSTSRY 84 (88)
T ss_dssp CSSBCHHHHHHHHHHHTC------------
T ss_pred cccCCHHHHHHHHHHHhcCc-ccccchhHH
Confidence 23699999999999999998 444333433
No 120
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.47 E-value=6.2e-13 Score=142.48 Aligned_cols=179 Identities=20% Similarity=0.281 Sum_probs=129.6
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhhh
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~ 280 (764)
+..+-+|+++.|.++.++.+++++.. -..+..+|++||||||||++++++++.++..++.+++++..
T Consensus 19 k~rP~~~~~ivg~~~~~~~l~~~l~~------------~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~- 85 (324)
T 3u61_B 19 KYRPSTIDECILPAFDKETFKSITSK------------GKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK- 85 (324)
T ss_dssp HSCCCSTTTSCCCHHHHHHHHHHHHT------------TCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC-
T ss_pred hhCCCCHHHHhCcHHHHHHHHHHHHc------------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC-
Confidence 45667899999999999999988873 13345688899999999999999999999999999976531
Q ss_pred hccchhHHHHHHHHHHHHhc-----CCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCC
Q 004267 281 KLAGESESNLRKAFEEAEKN-----APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPN 355 (764)
Q Consensus 281 ~~~g~~~~~l~~vf~~a~~~-----~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~ 355 (764)
...++..+...... .+.++||||+|.+.. ......|+..++... .++.+|++||.+.
T Consensus 86 ------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~----------~~~~~~L~~~le~~~--~~~~iI~~~n~~~ 147 (324)
T 3u61_B 86 ------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL----------AESQRHLRSFMEAYS--SNCSIIITANNID 147 (324)
T ss_dssp ------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG----------HHHHHHHHHHHHHHG--GGCEEEEEESSGG
T ss_pred ------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc----------HHHHHHHHHHHHhCC--CCcEEEEEeCCcc
Confidence 34455555554333 568999999998841 113355666666543 3567788999999
Q ss_pred CCChhhhccCCcceEEEecCCChHHHHHHHHHHhc---------CCCCCCchhhhHHhhhcCCCchH
Q 004267 356 SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTK---------NMKLSDDVDLERIAKDTHGYVGA 413 (764)
Q Consensus 356 ~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~---------~~~l~~~~~l~~la~~t~g~~~~ 413 (764)
.+++++++ || ..+.++.|+.++|.+|++.... +..+.+...+..++..+.|....
T Consensus 148 ~l~~~l~s--R~-~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~ 211 (324)
T 3u61_B 148 GIIKPLQS--RC-RVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRK 211 (324)
T ss_dssp GSCTTHHH--HS-EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTTH
T ss_pred ccCHHHHh--hC-cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHHH
Confidence 99999998 77 4699999999988776554321 22333314577777777765544
No 121
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.47 E-value=2.5e-13 Score=144.74 Aligned_cols=187 Identities=21% Similarity=0.261 Sum_probs=130.7
Q ss_pred ccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHh-----CCeeEEEecccch
Q 004267 478 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELL 552 (764)
Q Consensus 478 v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~-----~~~~i~v~~~~l~ 552 (764)
..|+++.|.+.+++.+...+.. + . ..+++|+||||||||++|++++..+ +.+++.+++++..
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~-----------~-~-~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~ 80 (319)
T 2chq_A 14 RTLDEVVGQDEVIQRLKGYVER-----------K-N-IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDER 80 (319)
T ss_dssp SSGGGSCSCHHHHHHHHTTTTT-----------T-C-CCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTT
T ss_pred CCHHHHhCCHHHHHHHHHHHhC-----------C-C-CCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCcccc
Confidence 4578899999998888765432 1 1 2249999999999999999999985 3467888887643
Q ss_pred hcccCcchHHHHHHHHHH-h-hCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCC
Q 004267 553 TMWFGESEANVREIFDKA-R-QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRP 630 (764)
Q Consensus 553 ~~~~g~se~~i~~~f~~a-~-~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~ 630 (764)
+ .......+....... . ...+.++|+||+|.+.. ...+.|+..|+.. ..++.+|++||.+
T Consensus 81 ~--~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~--------------~~~~~L~~~le~~--~~~~~~i~~~~~~ 142 (319)
T 2chq_A 81 G--IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA--------------DAQAALRRTMEMY--SKSCRFILSCNYV 142 (319)
T ss_dssp C--TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH--------------HHHHTTGGGTSSS--SSSEEEEEEESCG
T ss_pred C--hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH--------------HHHHHHHHHHHhc--CCCCeEEEEeCCh
Confidence 2 111112222222111 1 24578999999998742 3456677777753 3467888889999
Q ss_pred CCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCCCCHHHHHHHHHHHH
Q 004267 631 DIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRAC 699 (764)
Q Consensus 631 ~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~~g~sg~di~~~~~~a~ 699 (764)
+.+++++.+ |+. .+.|++|+.+++.++++..+++.++. ++..+..++..+.| +.+.+.++++.++
T Consensus 143 ~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~~~~~l~~~~ 208 (319)
T 2chq_A 143 SRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAA 208 (319)
T ss_dssp GGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTT-CHHHHHHHHHHHH
T ss_pred hhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 999999988 886 89999999999999999998776554 22346677766654 5556666665554
No 122
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.47 E-value=1.4e-14 Score=167.14 Aligned_cols=223 Identities=16% Similarity=0.181 Sum_probs=136.1
Q ss_pred cccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEE----ecccchhccc
Q 004267 481 EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISV----KGPELLTMWF 556 (764)
Q Consensus 481 ~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v----~~~~l~~~~~ 556 (764)
..|.|++.+|+.+.-.+... ....+....++...++||+||||||||+||+++|..+...++.. ++.++....+
T Consensus 295 ~~I~G~e~vk~al~~~l~~g--~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~ 372 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGG--VPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVV 372 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCC--CCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECS
T ss_pred chhcChHHHHHHHHHHHhCC--CcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceee
Confidence 45778888887775433211 11111112233344799999999999999999999987665442 2222222111
Q ss_pred -----CcchHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCC-----------CCCc
Q 004267 557 -----GESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-----------AKKT 620 (764)
Q Consensus 557 -----g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~-----------~~~~ 620 (764)
|..... ...+..|. .+|+||||||.+.. ...+.|+..|+... -..+
T Consensus 373 ~~~~~g~~~~~-~G~l~~A~---~gil~IDEid~l~~--------------~~q~~Ll~~le~~~i~i~~~g~~~~~~~~ 434 (595)
T 3f9v_A 373 REKGTGEYYLE-AGALVLAD---GGIAVIDEIDKMRD--------------EDRVAIHEAMEQQTVSIAKAGIVAKLNAR 434 (595)
T ss_dssp SGGGTSSCSEE-ECHHHHHS---SSEECCTTTTCCCS--------------HHHHHHHHHHHSSSEEEESSSSEEEECCC
T ss_pred ecccccccccc-CCeeEecC---CCcEEeehhhhCCH--------------hHhhhhHHHHhCCEEEEecCCcEEEecCc
Confidence 111000 11222332 35999999998632 34566777776422 1246
Q ss_pred EEEEecCCCCC-------------CCCccCCCCCccce-EEeecCCCHHHHHHHHHHHhccCCC----------------
Q 004267 621 VFIIGATNRPD-------------IIDPALLRPGRLDQ-LIYIPLPDEDSRHQIFKACLRKSPV---------------- 670 (764)
Q Consensus 621 v~vi~aTn~~~-------------~ld~allrpgRf~~-~i~~~~p~~~~r~~Il~~~~~~~~~---------------- 670 (764)
+.||+|||+++ .|++++++ |||. .+..+.|+.+ ...|.+..++....
T Consensus 435 ~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l~~~~l~~~i 511 (595)
T 3f9v_A 435 AAVIAAGNPKFGRYISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DRELANYILDVHSGKSTKNIIDIDTLRKYI 511 (595)
T ss_dssp CEEEEEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHTTTCCCSSSSTTCCTTTHHHH
T ss_pred eEEEEEcCCcCCccCcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHHHhhccccccCCCHHHHHHHH
Confidence 78999999986 89999999 9985 5555677777 88888877754321
Q ss_pred ----------CCcccHHHHHHH--------------CCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCCCccccc
Q 004267 671 ----------SKDVDLRALAKY--------------TQGFSGADITEICQRACKYAIRENIEKDIERERRRRDNPEAMDE 726 (764)
Q Consensus 671 ----------~~~~~l~~la~~--------------~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 726 (764)
-++...+.+++. ..+.|.+.+.++++.|...|..+.
T Consensus 512 ~~ar~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~-------------------- 571 (595)
T 3f9v_A 512 AYARKYVTPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMAL-------------------- 571 (595)
T ss_dssp HHHHHHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTS--------------------
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhC--------------------
Confidence 111112233332 235667777777776665554322
Q ss_pred cccccccccccHHHHHHHHHhcCCCC
Q 004267 727 DAAEDEVSEIKAAHFEESMKFARRSI 752 (764)
Q Consensus 727 ~~~~~~~~~i~~~~f~~a~~~~~~s~ 752 (764)
...|+.+|+.+|+.-++.|+
T Consensus 572 ------~~~V~~~dv~~Ai~l~~~sl 591 (595)
T 3f9v_A 572 ------KAEVTREDAERAINIMRLFL 591 (595)
T ss_dssp ------SCCSSHHHHHHHHHHHHHHH
T ss_pred ------cCCCCHHHHHHHHHHHHHHH
Confidence 34699999999998877665
No 123
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=99.47 E-value=6.6e-14 Score=118.36 Aligned_cols=77 Identities=29% Similarity=0.510 Sum_probs=71.7
Q ss_pred ecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCCCccccccc
Q 004267 649 IPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRRDNPEAMDEDA 728 (764)
Q Consensus 649 ~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (764)
-.+||.++|.+||+.++++.++..++|++.||+.|+|||||||.++|++|++.|+++.
T Consensus 8 ~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~---------------------- 65 (86)
T 2krk_A 8 HSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER---------------------- 65 (86)
T ss_dssp CCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTT----------------------
T ss_pred CCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHc----------------------
Confidence 4689999999999999999999999999999999999999999999999999999875
Q ss_pred cccccccccHHHHHHHHHhcCCC
Q 004267 729 AEDEVSEIKAAHFEESMKFARRS 751 (764)
Q Consensus 729 ~~~~~~~i~~~~f~~a~~~~~~s 751 (764)
...|+++||++|+++++|.
T Consensus 66 ----~~~I~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 66 ----RVHVTQEDFEMAVAKVMQK 84 (86)
T ss_dssp ----CSEECHHHHHHHHHHHHCC
T ss_pred ----CCCCCHHHHHHHHHHHccC
Confidence 2379999999999999885
No 124
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.46 E-value=1.2e-12 Score=143.22 Aligned_cols=219 Identities=21% Similarity=0.249 Sum_probs=131.7
Q ss_pred cccChHHHHHHHHHHHHccccChhhhh-----------------hhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEE
Q 004267 209 DVGGVRKQMAQIRELVELPLRHPQLFK-----------------SIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFF 271 (764)
Q Consensus 209 ~i~Gl~~~~~~l~e~i~~~l~~~~~~~-----------------~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i 271 (764)
+|.|+++.++.|..++..++....... .-...++.++||+||||||||++|+++|..++.+++
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 589999999999888753332222100 011235678999999999999999999999999999
Q ss_pred EEechhhh-hhccchh-HHHHHHHHHHH----HhcCCeEEEEccccccCCCCCCCchHHH---HHHHHHHHHHhhccc--
Q 004267 272 CINGPEIM-SKLAGES-ESNLRKAFEEA----EKNAPSIIFIDEIDSIAPKREKTHGEVE---RRIVSQLLTLMDGLK-- 340 (764)
Q Consensus 272 ~v~~~~l~-~~~~g~~-~~~l~~vf~~a----~~~~p~il~iDEid~l~~~~~~~~~~~~---~~v~~~Ll~~ld~~~-- 340 (764)
.+++..+. ..+.|.. +..+...+..+ ....++++||||++.+...+.......+ ..+...|+..|++..
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~ 181 (376)
T 1um8_A 102 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVN 181 (376)
T ss_dssp EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC
T ss_pred EecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhcccee
Confidence 99988764 2344432 33455555432 2346789999999999876433211111 236678888887531
Q ss_pred -----------------CCCeEEEEEecCCC-----------------------------------------CCCChhhh
Q 004267 341 -----------------SRAHVIVIGATNRP-----------------------------------------NSIDPALR 362 (764)
Q Consensus 341 -----------------~~~~v~vI~atn~~-----------------------------------------~~ld~al~ 362 (764)
...++++|+++|.. ..+.|.+.
T Consensus 182 ~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~ 261 (376)
T 1um8_A 182 IPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELI 261 (376)
T ss_dssp ---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHH
T ss_pred cccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHHh
Confidence 11345667666520 12445555
Q ss_pred ccCCcceEEEecCCChHHHHHHHHH----H-------h--cCCCC-CCchhhhHHhhhcC--CCchHHHHHHHHHHHHHH
Q 004267 363 RFGRFDREIDIGVPDEVGRLEVLRI----H-------T--KNMKL-SDDVDLERIAKDTH--GYVGADLAALCTEAALQC 426 (764)
Q Consensus 363 r~~rf~~~i~i~~p~~~~R~~il~~----~-------~--~~~~l-~~~~~l~~la~~t~--g~~~~dl~~l~~~a~~~~ 426 (764)
. |++..+.++.++.++..+|+.. + . .+..+ .++..+..++.... ....+.+..++..+....
T Consensus 262 ~--R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~~~~~ 339 (376)
T 1um8_A 262 G--RLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCLDI 339 (376)
T ss_dssp T--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHHH
T ss_pred c--CCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHHHHHHH
Confidence 5 8888899999999888888752 1 1 11111 12334566666533 355677887777776655
Q ss_pred HHh
Q 004267 427 IRE 429 (764)
Q Consensus 427 ~~~ 429 (764)
+.+
T Consensus 340 ~~~ 342 (376)
T 1um8_A 340 MFD 342 (376)
T ss_dssp HHT
T ss_pred Hhh
Confidence 543
No 125
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.46 E-value=3e-12 Score=128.32 Aligned_cols=175 Identities=21% Similarity=0.219 Sum_probs=122.6
Q ss_pred CCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHh-----CCeEEEEech
Q 004267 202 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET-----GAFFFCINGP 276 (764)
Q Consensus 202 ~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l-----~~~~i~v~~~ 276 (764)
..+..|+++.|.++.++.+.+.+... ...+++|+||||||||++++.++..+ ...++.+++.
T Consensus 11 ~~p~~~~~~~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~ 77 (226)
T 2chg_A 11 YRPRTLDEVVGQDEVIQRLKGYVERK-------------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNAS 77 (226)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHTT-------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETT
T ss_pred cCCCCHHHHcCcHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccc
Confidence 45567889999999999998887641 23359999999999999999999886 3446777765
Q ss_pred hhhhhccchhHHHHHHHHHHHH------hcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEe
Q 004267 277 EIMSKLAGESESNLRKAFEEAE------KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGA 350 (764)
Q Consensus 277 ~l~~~~~g~~~~~l~~vf~~a~------~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~a 350 (764)
.... ...+...+.... ...+.+|||||++.+.+. ....|+..++... .++.+|++
T Consensus 78 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~-----------~~~~l~~~l~~~~--~~~~~i~~ 138 (226)
T 2chg_A 78 DERG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTAD-----------AQAALRRTMEMYS--KSCRFILS 138 (226)
T ss_dssp CTTC------HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHH-----------HHHHHHHHHHHTT--TTEEEEEE
T ss_pred cccC------hHHHHHHHHHHhcccCCCccCceEEEEeChhhcCHH-----------HHHHHHHHHHhcC--CCCeEEEE
Confidence 4321 122233333322 246789999999987431 2345666666533 35677788
Q ss_pred cCCCCCCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCC-CCchhhhHHhhhcCCCc
Q 004267 351 TNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDDVDLERIAKDTHGYV 411 (764)
Q Consensus 351 tn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l-~~~~~l~~la~~t~g~~ 411 (764)
|+.+..+++.+.+ |+. .+.++.|+.++..+++...+..... .++..+..++..+.|..
T Consensus 139 ~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~ 197 (226)
T 2chg_A 139 CNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDF 197 (226)
T ss_dssp ESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCH
T ss_pred eCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 8988889999987 776 7899999999999998877643222 13345677777776643
No 126
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.46 E-value=1.2e-12 Score=143.32 Aligned_cols=202 Identities=19% Similarity=0.227 Sum_probs=133.2
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHh---------CCeEEEEech
Q 004267 206 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---------GAFFFCINGP 276 (764)
Q Consensus 206 ~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l---------~~~~i~v~~~ 276 (764)
..+++.|.+++++.+...+...+. -..+.+++|+||||||||++++.+++.+ +..++.+++.
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 87 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPALR---------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNAR 87 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGTS---------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECC
Confidence 347899999999999887653221 2456789999999999999999999988 7788899976
Q ss_pred hhhhh----------------ccchhH-HHHHHHHHHHHh-cCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhc
Q 004267 277 EIMSK----------------LAGESE-SNLRKAFEEAEK-NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDG 338 (764)
Q Consensus 277 ~l~~~----------------~~g~~~-~~l~~vf~~a~~-~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~ 338 (764)
...+. ..+... ..+..+++.... ..|.+|||||++.+.... ........++..+..
T Consensus 88 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~------~~~~~l~~l~~~~~~ 161 (387)
T 2v1u_A 88 HRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP------GGQDLLYRITRINQE 161 (387)
T ss_dssp TSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST------THHHHHHHHHHGGGC
T ss_pred cCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC------CCChHHHhHhhchhh
Confidence 53211 112112 224444444433 347899999999885432 012334444554443
Q ss_pred ccCCCeEEEEEecCCC---CCCChhhhccCCcce-EEEecCCChHHHHHHHHHHhcC----CCCCCchhhhHHhhhcC--
Q 004267 339 LKSRAHVIVIGATNRP---NSIDPALRRFGRFDR-EIDIGVPDEVGRLEVLRIHTKN----MKLSDDVDLERIAKDTH-- 408 (764)
Q Consensus 339 ~~~~~~v~vI~atn~~---~~ld~al~r~~rf~~-~i~i~~p~~~~R~~il~~~~~~----~~l~~~~~l~~la~~t~-- 408 (764)
.....++.+|++||.+ +.+++.+.+ ||.. .+.++.|+.++..++++..+.. ..+. +..++.++..+.
T Consensus 162 ~~~~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 238 (387)
T 2v1u_A 162 LGDRVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLD-PDVVPLCAALAARE 238 (387)
T ss_dssp C-----CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC-SSHHHHHHHHHHSS
T ss_pred cCCCceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC-HHHHHHHHHHHHHh
Confidence 3214578888899887 678888887 7764 8899999999999999877542 2233 334677777776
Q ss_pred -CCchHHHHHHHHHHHHHH
Q 004267 409 -GYVGADLAALCTEAALQC 426 (764)
Q Consensus 409 -g~~~~dl~~l~~~a~~~~ 426 (764)
|. ...+..++..+...+
T Consensus 239 ~G~-~r~~~~~l~~a~~~a 256 (387)
T 2v1u_A 239 HGD-ARRALDLLRVAGEIA 256 (387)
T ss_dssp SCC-HHHHHHHHHHHHHHH
T ss_pred ccC-HHHHHHHHHHHHHHH
Confidence 64 344556666665444
No 127
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.45 E-value=9.8e-13 Score=139.87 Aligned_cols=202 Identities=18% Similarity=0.279 Sum_probs=134.2
Q ss_pred ccccChHHHHHHHHHHHHcc---ccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCeEEEEechhhhhh
Q 004267 208 DDVGGVRKQMAQIRELVELP---LRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSK 281 (764)
Q Consensus 208 ~~i~Gl~~~~~~l~e~i~~~---l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~ 281 (764)
.++.|.+..++.+...+... +.+| -.+..+++|+||||||||++|+++++.+ +.+++.+++..+...
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~-------~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~ 89 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDP-------NRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEK 89 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCT-------TSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCST
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCC-------CCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeeccccccc
Confidence 45889999999998877642 1111 1234579999999999999999999998 455888888765321
Q ss_pred c-----cchh----HHH-HHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccC---------C
Q 004267 282 L-----AGES----ESN-LRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKS---------R 342 (764)
Q Consensus 282 ~-----~g~~----~~~-l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~---------~ 342 (764)
. .|.. ... .+.+.........+++||||+|.+.+ .+...|+..++...- -
T Consensus 90 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~-----------~~~~~Ll~~le~~~~~~~~~~~~~~ 158 (311)
T 4fcw_A 90 HAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHP-----------DVFNILLQMLDDGRLTDSHGRTVDF 158 (311)
T ss_dssp THHHHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCH-----------HHHHHHHHHHHHSEEECTTSCEEEC
T ss_pred ccHHHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCH-----------HHHHHHHHHHhcCEEEcCCCCEEEC
Confidence 1 1100 000 01233333444558999999998742 345667777764321 1
Q ss_pred CeEEEEEecCC--------------------------CCCCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCC----
Q 004267 343 AHVIVIGATNR--------------------------PNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNM---- 392 (764)
Q Consensus 343 ~~v~vI~atn~--------------------------~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~---- 392 (764)
.++++|++||. ...+++.+.. ||+..+.+++|+.+++.+|++.++...
T Consensus 159 ~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~ 236 (311)
T 4fcw_A 159 RNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSYLRARL 236 (311)
T ss_dssp TTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHHHHHHH
T ss_pred CCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHH
Confidence 25678889998 3457777775 999999999999999999988765432
Q ss_pred -----CC-CCchhhhHHhhhcC--CCchHHHHHHHHHHHHHHHHh
Q 004267 393 -----KL-SDDVDLERIAKDTH--GYVGADLAALCTEAALQCIRE 429 (764)
Q Consensus 393 -----~l-~~~~~l~~la~~t~--g~~~~dl~~l~~~a~~~~~~~ 429 (764)
.+ ..+..++.++.... .+..+++..++..+...++.+
T Consensus 237 ~~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~~ 281 (311)
T 4fcw_A 237 AEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQ 281 (311)
T ss_dssp HTTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHHH
T ss_pred HhCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHHHH
Confidence 11 12334666666554 567788888888777655443
No 128
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=99.45 E-value=1.1e-13 Score=115.15 Aligned_cols=76 Identities=30% Similarity=0.556 Sum_probs=70.1
Q ss_pred cCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCCCcccccccc
Q 004267 650 PLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRRDNPEAMDEDAA 729 (764)
Q Consensus 650 ~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 729 (764)
|+||.++|.+||+.++++.++..++|+..||+.|+||||+||.++|++|++.|+++.
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~----------------------- 57 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER----------------------- 57 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT-----------------------
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC-----------------------
Confidence 789999999999999999999899999999999999999999999999999999874
Q ss_pred ccccccccHHHHHHHHHhcCCC
Q 004267 730 EDEVSEIKAAHFEESMKFARRS 751 (764)
Q Consensus 730 ~~~~~~i~~~~f~~a~~~~~~s 751 (764)
...|+++||++|++++..+
T Consensus 58 ---~~~i~~~d~~~Al~~v~~~ 76 (78)
T 3kw6_A 58 ---RVHVTQEDFEMAVAKVMQK 76 (78)
T ss_dssp ---CSEECHHHHHHHHHHHHC-
T ss_pred ---CCCCCHHHHHHHHHHHHhc
Confidence 2369999999999998764
No 129
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.45 E-value=2.4e-13 Score=155.01 Aligned_cols=196 Identities=22% Similarity=0.306 Sum_probs=129.7
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHc-cccChhhhhhhCCC---CCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEech
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVEL-PLRHPQLFKSIGVK---PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGP 276 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~-~l~~~~~~~~l~i~---~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~ 276 (764)
+..+.+|++++|.++.++.+++++.. ...++..++..+.. ++.++||+||||||||++|+++|++++..++.++++
T Consensus 32 kyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s 111 (516)
T 1sxj_A 32 KYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNAS 111 (516)
T ss_dssp HTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTT
T ss_pred ccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 45667899999999999999998874 22222333333432 567999999999999999999999999999999988
Q ss_pred hhhhhccchhH-------HHHHHHHHHH-----HhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCe
Q 004267 277 EIMSKLAGESE-------SNLRKAFEEA-----EKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAH 344 (764)
Q Consensus 277 ~l~~~~~g~~~-------~~l~~vf~~a-----~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~ 344 (764)
+..+....... ..+..+|..+ ....+.+|||||+|.+..... ..+..|..+++.. ...
T Consensus 112 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~--------~~l~~L~~~l~~~--~~~ 181 (516)
T 1sxj_A 112 DVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDR--------GGVGQLAQFCRKT--STP 181 (516)
T ss_dssp SCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTST--------THHHHHHHHHHHC--SSC
T ss_pred CcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhH--------HHHHHHHHHHHhc--CCC
Confidence 76443211100 0012233333 235678999999999876432 1235566666542 335
Q ss_pred EEEEEecCCCCCCChhhhccCCcceEEEecCCChHHHHHHHHHHhc--CCCCCCchhhhHHhhhcCCCc
Q 004267 345 VIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTK--NMKLSDDVDLERIAKDTHGYV 411 (764)
Q Consensus 345 v~vI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~--~~~l~~~~~l~~la~~t~g~~ 411 (764)
+++++++.....+.+ ++ |+...+.++.|+.+++.+++...+. ++.+.++ .+..++..+.|-.
T Consensus 182 iIli~~~~~~~~l~~-l~---~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~-~l~~la~~s~Gdi 245 (516)
T 1sxj_A 182 LILICNERNLPKMRP-FD---RVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPN-VIDRLIQTTRGDI 245 (516)
T ss_dssp EEEEESCTTSSTTGG-GT---TTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTT-HHHHHHHHTTTCH
T ss_pred EEEEEcCCCCccchh-hH---hceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCCcH
Confidence 666655444334433 33 4557899999999999998876553 3444443 4788888876643
No 130
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.45 E-value=2.4e-13 Score=145.11 Aligned_cols=183 Identities=17% Similarity=0.186 Sum_probs=129.6
Q ss_pred ccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHh-----CCeeEEEecccch
Q 004267 478 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELL 552 (764)
Q Consensus 478 v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~-----~~~~i~v~~~~l~ 552 (764)
..|+++.|.+.+.+.+.+.+.. + ..+ +++|+||||+|||++|++++..+ +.+++.+++++..
T Consensus 18 ~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~ 84 (323)
T 1sxj_B 18 QVLSDIVGNKETIDRLQQIAKD-----------G-NMP-HMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDR 84 (323)
T ss_dssp SSGGGCCSCTHHHHHHHHHHHS-----------C-CCC-CEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCC
T ss_pred CCHHHHHCCHHHHHHHHHHHHc-----------C-CCC-eEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCcccc
Confidence 4578888999888877765431 1 222 39999999999999999999985 3457778776532
Q ss_pred hcccCcchHHHHHHHHHHh-------hCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEe
Q 004267 553 TMWFGESEANVREIFDKAR-------QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIG 625 (764)
Q Consensus 553 ~~~~g~se~~i~~~f~~a~-------~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~ 625 (764)
+...++.+++... ...+.++|+||+|.+.. ...+.|+..++.. ..++.+|+
T Consensus 85 ------~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~--------------~~~~~L~~~le~~--~~~~~~il 142 (323)
T 1sxj_B 85 ------GIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA--------------GAQQALRRTMELY--SNSTRFAF 142 (323)
T ss_dssp ------SHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH--------------HHHHTTHHHHHHT--TTTEEEEE
T ss_pred ------ChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH--------------HHHHHHHHHHhcc--CCCceEEE
Confidence 2345566665544 33478999999998743 2244555555542 34567778
Q ss_pred cCCCCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCCCCHHHHHHHHHHHH
Q 004267 626 ATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRAC 699 (764)
Q Consensus 626 aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~~g~sg~di~~~~~~a~ 699 (764)
+||.++.+++++.+ |+. .+.|++|+.++..++++..+++.++. ++..+..+++.+.| +.+.+.++++.++
T Consensus 143 ~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~a~~~l~~~~ 213 (323)
T 1sxj_B 143 ACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEG-DMRQAINNLQSTV 213 (323)
T ss_dssp EESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred EeCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 88989999999987 776 89999999999999999888654433 23346778887765 5555556665554
No 131
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.44 E-value=1.7e-12 Score=144.63 Aligned_cols=185 Identities=21% Similarity=0.266 Sum_probs=127.8
Q ss_pred cCCCCCcccccChHHHH---HHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechh
Q 004267 201 RLDEVGYDDVGGVRKQM---AQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPE 277 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~---~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~ 277 (764)
.+.+-+++++.|.++.+ ..++..+... ...+++|+|||||||||+|++|++.++..++.+++..
T Consensus 19 r~rP~~l~~ivGq~~~~~~~~~L~~~i~~~-------------~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~ 85 (447)
T 3pvs_A 19 RMRPENLAQYIGQQHLLAAGKPLPRAIEAG-------------HLHSMILWGPPGTGKTTLAEVIARYANADVERISAVT 85 (447)
T ss_dssp HTCCCSTTTCCSCHHHHSTTSHHHHHHHHT-------------CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTT
T ss_pred HhCCCCHHHhCCcHHHHhchHHHHHHHHcC-------------CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEecc
Confidence 34566889999999998 6677776541 2257999999999999999999999999999998643
Q ss_pred hhhhccchhHHHHHHHHHHHH----hcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEec--
Q 004267 278 IMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGAT-- 351 (764)
Q Consensus 278 l~~~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~at-- 351 (764)
. ....++.++..+. ...+.+|||||+|.+.... ...|+..++. ..+++|++|
T Consensus 86 ~-------~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~-----------q~~LL~~le~----~~v~lI~att~ 143 (447)
T 3pvs_A 86 S-------GVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQ-----------QDAFLPHIED----GTITFIGATTE 143 (447)
T ss_dssp C-------CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC-----------------CCHHHHHT----TSCEEEEEESS
T ss_pred C-------CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHH-----------HHHHHHHHhc----CceEEEecCCC
Confidence 2 2334555665554 3467999999999885432 2335555553 345666655
Q ss_pred CCCCCCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCC-------C-CCchhhhHHhhhcCCCchHHHHHHHHHHH
Q 004267 352 NRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMK-------L-SDDVDLERIAKDTHGYVGADLAALCTEAA 423 (764)
Q Consensus 352 n~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~-------l-~~~~~l~~la~~t~g~~~~dl~~l~~~a~ 423 (764)
|....+++++.+ |+. .+.+..|+.++...+++..+.... + .++..++.++..+.|.. +.+..++..+.
T Consensus 144 n~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~-R~lln~Le~a~ 219 (447)
T 3pvs_A 144 NPSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDA-RRALNTLEMMA 219 (447)
T ss_dssp CGGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCH-HHHHHHHHHHH
T ss_pred CcccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCH-HHHHHHHHHHH
Confidence 334578999988 774 678999999999999988765421 1 23345777888876643 44455555554
Q ss_pred H
Q 004267 424 L 424 (764)
Q Consensus 424 ~ 424 (764)
.
T Consensus 220 ~ 220 (447)
T 3pvs_A 220 D 220 (447)
T ss_dssp H
T ss_pred H
Confidence 3
No 132
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.43 E-value=4.5e-13 Score=146.21 Aligned_cols=185 Identities=21% Similarity=0.327 Sum_probs=133.7
Q ss_pred ccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCe---------------
Q 004267 478 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN--------------- 542 (764)
Q Consensus 478 v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~--------------- 542 (764)
..|+++.|.+.+.+.|...+.. + ..+..++|+||+|||||++|+++|+.+...
T Consensus 13 ~~~~~~vg~~~~~~~L~~~l~~-----------~-~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 80 (373)
T 1jr3_A 13 QTFADVVGQEHVLTALANGLSL-----------G-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 (373)
T ss_dssp CSTTTSCSCHHHHHHHHHHHHH-----------T-CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHH
T ss_pred CchhhccCcHHHHHHHHHHHHh-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHH
Confidence 3578899999888877765431 1 223458999999999999999999987531
Q ss_pred ---------eEEEecccchhcccCcchHHHHHHHHHHhh----CCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHH
Q 004267 543 ---------FISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLL 609 (764)
Q Consensus 543 ---------~i~v~~~~l~~~~~g~se~~i~~~f~~a~~----~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL 609 (764)
++.+++.. ......++.+++.+.. ..+.|+||||+|.+. ....+.|+
T Consensus 81 ~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~--------------~~~~~~Ll 140 (373)
T 1jr3_A 81 EIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS--------------RHSFNALL 140 (373)
T ss_dssp HHHTSCCSSCEEEETTC------SCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSC--------------HHHHHHHH
T ss_pred HHhccCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCeEEEEEECcchhc--------------HHHHHHHH
Confidence 23333221 0123356777777653 346899999999873 23456777
Q ss_pred HhhcCCCCCCcEEEEecCCCCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCCC-cccHHHHHHHCCCCCH
Q 004267 610 TEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSK-DVDLRALAKYTQGFSG 688 (764)
Q Consensus 610 ~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~-~~~l~~la~~~~g~sg 688 (764)
..++.. ..++++|++||.++.+.+++.+ |+ ..+.|++|+.++..++++..+++.++.- +..+..+++.+.| +.
T Consensus 141 ~~le~~--~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G-~~ 214 (373)
T 1jr3_A 141 KTLEEP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SL 214 (373)
T ss_dssp HHHHSC--CSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSS-CH
T ss_pred HHHhcC--CCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCC-CH
Confidence 777753 4467888888888889999887 77 6899999999999999999887655442 2336778888865 78
Q ss_pred HHHHHHHHHHHH
Q 004267 689 ADITEICQRACK 700 (764)
Q Consensus 689 ~di~~~~~~a~~ 700 (764)
+++.++++.+..
T Consensus 215 r~~~~~l~~~~~ 226 (373)
T 1jr3_A 215 RDALSLTDQAIA 226 (373)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888877754
No 133
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.43 E-value=6e-13 Score=140.63 Aligned_cols=159 Identities=13% Similarity=0.124 Sum_probs=112.4
Q ss_pred ccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCeEEEEechhhh
Q 004267 210 VGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFCINGPEIM 279 (764)
Q Consensus 210 i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l----------~~~~i~v~~~~l~ 279 (764)
+.|-++++++|..++.-.+ .-..+.+++|+||||||||++++.++.++ ...++.+||..+.
T Consensus 22 L~~Re~E~~~i~~~L~~~i---------~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~ 92 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSL---------MSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELA 92 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHH---------HTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC
T ss_pred cCCHHHHHHHHHHHHHHHh---------cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccC
Confidence 5566677777766654322 23568899999999999999999999998 3467889986543
Q ss_pred h----------hc------cchhHHHHHHHHHHH--HhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccC
Q 004267 280 S----------KL------AGESESNLRKAFEEA--EKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKS 341 (764)
Q Consensus 280 ~----------~~------~g~~~~~l~~vf~~a--~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~ 341 (764)
+ .. .+.....++..|... ....+.|+++||+|.+. . +.++..|+.+.. ..
T Consensus 93 t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~-~---------q~~L~~l~~~~~--~~ 160 (318)
T 3te6_A 93 GMDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL-S---------EKILQYFEKWIS--SK 160 (318)
T ss_dssp --HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC-C---------THHHHHHHHHHH--CS
T ss_pred CHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh-c---------chHHHHHHhccc--cc
Confidence 2 22 133456778888864 34567899999999997 1 234444554433 23
Q ss_pred CCeEEEEEecCCCCCCCh----hhhccCCcc-eEEEecCCChHHHHHHHHHHhcC
Q 004267 342 RAHVIVIGATNRPNSIDP----ALRRFGRFD-REIDIGVPDEVGRLEVLRIHTKN 391 (764)
Q Consensus 342 ~~~v~vI~atn~~~~ld~----al~r~~rf~-~~i~i~~p~~~~R~~il~~~~~~ 391 (764)
..++++|+++|..+..+. ++++ ||. ..|.++.++.++..+|++..+..
T Consensus 161 ~s~~~vI~i~n~~d~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 161 NSKLSIICVGGHNVTIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp SCCEEEEEECCSSCCCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred CCcEEEEEEecCcccchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHHh
Confidence 457899999998865443 3344 675 67999999999999999876554
No 134
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=99.42 E-value=1.6e-13 Score=115.82 Aligned_cols=75 Identities=32% Similarity=0.434 Sum_probs=67.5
Q ss_pred CHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCCCccccccccccc
Q 004267 653 DEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRRDNPEAMDEDAAEDE 732 (764)
Q Consensus 653 ~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (764)
|.++|.+||+.++++.++..++|+..||+.|+|||||||.++|++|++.|+++.
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~-------------------------- 55 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVREN-------------------------- 55 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSC--------------------------
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc--------------------------
Confidence 789999999999999999999999999999999999999999999999998764
Q ss_pred cccccHHHHHHHHHhcCCCCCC
Q 004267 733 VSEIKAAHFEESMKFARRSICS 754 (764)
Q Consensus 733 ~~~i~~~~f~~a~~~~~~s~~~ 754 (764)
...|+++||+.|+++++||+ +
T Consensus 56 ~~~i~~~df~~Al~~~~ps~-~ 76 (83)
T 3aji_B 56 RYIVLAKDFEKAYKTVIKKD-E 76 (83)
T ss_dssp CSSBCHHHHHHHHHHHCC----
T ss_pred cCCcCHHHHHHHHHHHccCc-h
Confidence 24799999999999999999 5
No 135
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.41 E-value=5.3e-12 Score=128.46 Aligned_cols=187 Identities=14% Similarity=0.127 Sum_probs=122.3
Q ss_pred CCcccccC---hHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhC---CeEEEEechhh
Q 004267 205 VGYDDVGG---VRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG---AFFFCINGPEI 278 (764)
Q Consensus 205 ~~~~~i~G---l~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~---~~~i~v~~~~l 278 (764)
.+|+++.| ....++.+..++.. ..+.+++|+||||||||+++++++..+. ..++.+++.++
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~ 91 (242)
T 3bos_A 25 ETFTSYYPAAGNDELIGALKSAASG-------------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH 91 (242)
T ss_dssp CSTTTSCC--CCHHHHHHHHHHHHT-------------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred CChhhccCCCCCHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 46677665 34556666665543 2467899999999999999999998874 66788888776
Q ss_pred hhhccchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeE-EEEEecCCCC--
Q 004267 279 MSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHV-IVIGATNRPN-- 355 (764)
Q Consensus 279 ~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v-~vI~atn~~~-- 355 (764)
....... ++. ...+.+|||||++.+.... .....|+..++.......+ +|++++..+.
T Consensus 92 ~~~~~~~--------~~~--~~~~~vliiDe~~~~~~~~---------~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~ 152 (242)
T 3bos_A 92 ASISTAL--------LEG--LEQFDLICIDDVDAVAGHP---------LWEEAIFDLYNRVAEQKRGSLIVSASASPMEA 152 (242)
T ss_dssp GGSCGGG--------GTT--GGGSSEEEEETGGGGTTCH---------HHHHHHHHHHHHHHHHCSCEEEEEESSCTTTT
T ss_pred HHHHHHH--------HHh--ccCCCEEEEeccccccCCH---------HHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHH
Confidence 5433211 111 1446899999999885431 1123455555544333333 5555555554
Q ss_pred -CCChhhhccCCcc--eEEEecCCChHHHHHHHHHHhcCCCCC-CchhhhHHhhhcCCCchHHHHHHHHHHHHHH
Q 004267 356 -SIDPALRRFGRFD--REIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTEAALQC 426 (764)
Q Consensus 356 -~ld~al~r~~rf~--~~i~i~~p~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~ 426 (764)
.+++.+.+ ||. ..++++.|+.+++.+++..++...... ++..++.++..+.| ..+.+..++..+...+
T Consensus 153 ~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~a 224 (242)
T 3bos_A 153 GFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DLRTLFDVLDRLDKAS 224 (242)
T ss_dssp TCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHHH
T ss_pred HHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHH
Confidence 44577776 665 889999999999999999877543322 33456778877765 4566666666665544
No 136
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.41 E-value=8.2e-12 Score=136.75 Aligned_cols=192 Identities=21% Similarity=0.213 Sum_probs=127.7
Q ss_pred ccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHh-----------CCeEEEEech
Q 004267 208 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET-----------GAFFFCINGP 276 (764)
Q Consensus 208 ~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l-----------~~~~i~v~~~ 276 (764)
+++.|.+++++.+.+.+...+. -..+.+++|+||||||||++++++++.+ +..++.+++.
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK---------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT---------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CCCCChHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 6799999999999887754221 1346689999999999999999999987 8889999976
Q ss_pred hhh-h----------hc-------cchh-HHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHH-HHHHHHHh
Q 004267 277 EIM-S----------KL-------AGES-ESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRI-VSQLLTLM 336 (764)
Q Consensus 277 ~l~-~----------~~-------~g~~-~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v-~~~Ll~~l 336 (764)
... + .. .+.. ...+..++..+... +.+|||||+|.+...... .. ...|+
T Consensus 91 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~-~~vlilDEi~~l~~~~~~-------~~~l~~l~--- 159 (384)
T 2qby_B 91 EVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNI-RAIIYLDEVDTLVKRRGG-------DIVLYQLL--- 159 (384)
T ss_dssp HHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSS-CEEEEEETTHHHHHSTTS-------HHHHHHHH---
T ss_pred cCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccC-CCEEEEECHHHhccCCCC-------ceeHHHHh---
Confidence 543 1 00 0111 22334444444333 349999999988643211 11 22233
Q ss_pred hcccCCCeEEEEEecCCC---CCCChhhhccCCcceEEEecCCChHHHHHHHHHHhcC-C--CCCCchhhhHHhhhcCCC
Q 004267 337 DGLKSRAHVIVIGATNRP---NSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKN-M--KLSDDVDLERIAKDTHGY 410 (764)
Q Consensus 337 d~~~~~~~v~vI~atn~~---~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~-~--~l~~~~~l~~la~~t~g~ 410 (764)
... .++.+|++||.+ +.+++.+.+ ||...+.++.|+.++..++++.++.. + ...++..++.+++.+.+.
T Consensus 160 ~~~---~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 234 (384)
T 2qby_B 160 RSD---ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKE 234 (384)
T ss_dssp TSS---SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTT
T ss_pred cCC---cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhc
Confidence 222 578888899887 678898887 77779999999999999999887652 2 122334567777777622
Q ss_pred ch--HHHHHHHHHHHH
Q 004267 411 VG--ADLAALCTEAAL 424 (764)
Q Consensus 411 ~~--~dl~~l~~~a~~ 424 (764)
.| ..+..++..+..
T Consensus 235 ~G~~r~a~~~l~~a~~ 250 (384)
T 2qby_B 235 HGDARKAVNLLFRAAQ 250 (384)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 22 233445555543
No 137
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.40 E-value=1.1e-11 Score=125.88 Aligned_cols=187 Identities=19% Similarity=0.253 Sum_probs=128.9
Q ss_pred CCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCe------------
Q 004267 202 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF------------ 269 (764)
Q Consensus 202 ~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~------------ 269 (764)
..+-.++++.|.+..++.+.+.+... ..+..++|+||||||||++++.+++.++..
T Consensus 17 ~~p~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~ 84 (250)
T 1njg_A 17 WRPQTFADVVGQEHVLTALANGLSLG------------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 84 (250)
T ss_dssp TCCCSGGGCCSCHHHHHHHHHHHHHT------------CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSH
T ss_pred cCCccHHHHhCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccH
Confidence 44557888999999999998887531 223579999999999999999999887432
Q ss_pred ------------EEEEechhhhhhccchhHHHHHHHHHHHH----hcCCeEEEEccccccCCCCCCCchHHHHHHHHHHH
Q 004267 270 ------------FFCINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLL 333 (764)
Q Consensus 270 ------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll 333 (764)
++.++... ......++.+++.+. ...+.+|||||++.+.+ .....|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~-----------~~~~~l~ 147 (250)
T 1njg_A 85 NCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR-----------HSFNALL 147 (250)
T ss_dssp HHHHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCH-----------HHHHHHH
T ss_pred HHHHHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECcccccH-----------HHHHHHH
Confidence 12222211 112334555555432 23578999999998631 2345566
Q ss_pred HHhhcccCCCeEEEEEecCCCCCCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCC-CchhhhHHhhhcCCCch
Q 004267 334 TLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVG 412 (764)
Q Consensus 334 ~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~~~ 412 (764)
..++.. ...+.+|.+|+.+..+++.+.+ |+ ..+.++.++.++..+++..++...... ++..+..+++.+.| ..
T Consensus 148 ~~l~~~--~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~ 221 (250)
T 1njg_A 148 KTLEEP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SL 221 (250)
T ss_dssp HHHHSC--CTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTT-CH
T ss_pred HHHhcC--CCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC-CH
Confidence 666653 3467788888888888888877 55 678999999999999998776543322 33457788888877 45
Q ss_pred HHHHHHHHHHH
Q 004267 413 ADLAALCTEAA 423 (764)
Q Consensus 413 ~dl~~l~~~a~ 423 (764)
..+..++..+.
T Consensus 222 ~~~~~~~~~~~ 232 (250)
T 1njg_A 222 RDALSLTDQAI 232 (250)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666553
No 138
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.39 E-value=8.5e-13 Score=141.14 Aligned_cols=184 Identities=23% Similarity=0.311 Sum_probs=128.7
Q ss_pred CccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhC-----CeeEEEecccc
Q 004267 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ-----ANFISVKGPEL 551 (764)
Q Consensus 477 ~v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~-----~~~i~v~~~~l 551 (764)
...|+++.|.+.+++.+...+.. + ...+++|+||||||||++|++++..+. ..++.+++++.
T Consensus 21 p~~~~~~~g~~~~~~~l~~~l~~-----------~--~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~ 87 (327)
T 1iqp_A 21 PQRLDDIVGQEHIVKRLKHYVKT-----------G--SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDE 87 (327)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHH-----------T--CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCH
T ss_pred CCCHHHhhCCHHHHHHHHHHHHc-----------C--CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeecccc
Confidence 34578899999998887765432 1 123499999999999999999999853 34777777654
Q ss_pred hhcccCcchHHHHHHHHH-Hh-----hCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEe
Q 004267 552 LTMWFGESEANVREIFDK-AR-----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIG 625 (764)
Q Consensus 552 ~~~~~g~se~~i~~~f~~-a~-----~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~ 625 (764)
.+ ...++..+.. +. ...+.++|+||+|.+.. ...+.|+..|+.. ..++.+|+
T Consensus 88 ~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~--------------~~~~~L~~~le~~--~~~~~~i~ 145 (327)
T 1iqp_A 88 RG------INVIREKVKEFARTKPIGGASFKIIFLDEADALTQ--------------DAQQALRRTMEMF--SSNVRFIL 145 (327)
T ss_dssp HH------HHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCH--------------HHHHHHHHHHHHT--TTTEEEEE
T ss_pred Cc------hHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCH--------------HHHHHHHHHHHhc--CCCCeEEE
Confidence 22 1122222221 11 14578999999998732 2345666666643 34577888
Q ss_pred cCCCCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCCCCHHHHHHHHHHHH
Q 004267 626 ATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRAC 699 (764)
Q Consensus 626 aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~~g~sg~di~~~~~~a~ 699 (764)
+||.++.+++++.+ |+. .+.|++|+.++..++++..+++.++. ++..++.+++.+.| +.+.+.++++.+.
T Consensus 146 ~~~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~~~~ 216 (327)
T 1iqp_A 146 SCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQAAA 216 (327)
T ss_dssp EESCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred EeCCccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence 89999999999887 887 89999999999999999988766543 23346677777754 6666666766555
No 139
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.38 E-value=2e-11 Score=131.32 Aligned_cols=195 Identities=22% Similarity=0.326 Sum_probs=132.3
Q ss_pred CCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhhhh
Q 004267 202 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSK 281 (764)
Q Consensus 202 ~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~ 281 (764)
+..-+++++.|.+..++.+...+..... -+ .++.+++|+||||||||||++++|+.++..+...+++.+..
T Consensus 19 lr~~~l~~~~g~~~~~~~l~~~i~~~~~-------~~-~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~- 89 (334)
T 1in4_A 19 LRPKSLDEFIGQENVKKKLSLALEAAKM-------RG-EVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK- 89 (334)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHHHHH-------HT-CCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS-
T ss_pred cCCccHHHccCcHHHHHHHHHHHHHHHh-------cC-CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC-
Confidence 4444778888888888887766543110 01 34578999999999999999999999998887777754421
Q ss_pred ccchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhccc-------C---------CCeE
Q 004267 282 LAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK-------S---------RAHV 345 (764)
Q Consensus 282 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-------~---------~~~v 345 (764)
...+..++.. .....|+|+||++.+.+. +.+.|+..+.... . -..+
T Consensus 90 -----~~~l~~~~~~--~~~~~v~~iDE~~~l~~~-----------~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~ 151 (334)
T 1in4_A 90 -----QGDMAAILTS--LERGDVLFIDEIHRLNKA-----------VEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPF 151 (334)
T ss_dssp -----HHHHHHHHHH--CCTTCEEEEETGGGCCHH-----------HHHHHHHHHHTSCCCC---------------CCC
T ss_pred -----HHHHHHHHHH--ccCCCEEEEcchhhcCHH-----------HHHHHHHHHHhcccceeeccCcccccccccCCCe
Confidence 1223333322 234679999999988531 1222333332211 0 1246
Q ss_pred EEEEecCCCCCCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCC-CchhhhHHhhhcCCCchHHHHHHHHHHHH
Q 004267 346 IVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTEAAL 424 (764)
Q Consensus 346 ~vI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~a~~ 424 (764)
.++++|+++..+++.+++ ||...+.++.|+.++..++++...+..... ++..+..++.++.|.. +.+..++..+..
T Consensus 152 ~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~-R~a~~ll~~~~~ 228 (334)
T 1in4_A 152 TLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTP-RIAIRLTKRVRD 228 (334)
T ss_dssp EEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCH-HHHHHHHHHHHH
T ss_pred EEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCCh-HHHHHHHHHHHH
Confidence 677899999999999998 898889999999999999998776543332 3345788888888865 566666666544
Q ss_pred HH
Q 004267 425 QC 426 (764)
Q Consensus 425 ~~ 426 (764)
.+
T Consensus 229 ~a 230 (334)
T 1in4_A 229 ML 230 (334)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 140
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.38 E-value=1.4e-11 Score=134.61 Aligned_cols=201 Identities=19% Similarity=0.260 Sum_probs=132.2
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHh------CCeEEEEechhhh
Q 004267 206 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET------GAFFFCINGPEIM 279 (764)
Q Consensus 206 ~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l------~~~~i~v~~~~l~ 279 (764)
..+++.|.+++++.+.+.+...+. -..+..++|+||||||||+|++.+++.+ +..++.+++....
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~~~---------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~ 88 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPLYR---------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQID 88 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGGGG---------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHC
T ss_pred CCCCCCChHHHHHHHHHHHHHHHc---------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCC
Confidence 347899999999998877653221 1456789999999999999999999988 7888999876432
Q ss_pred h------h----------ccch-hHHHHHHHHHHHHhcC-CeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccC
Q 004267 280 S------K----------LAGE-SESNLRKAFEEAEKNA-PSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKS 341 (764)
Q Consensus 280 ~------~----------~~g~-~~~~l~~vf~~a~~~~-p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~ 341 (764)
. . ..+. ....+..+++...... |.+|+|||++.+..... ..+...|+..++.+ .
T Consensus 89 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~-------~~~l~~l~~~~~~~-~ 160 (386)
T 2qby_A 89 TPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN-------DDILYKLSRINSEV-N 160 (386)
T ss_dssp SHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC-------STHHHHHHHHHHSC-C
T ss_pred CHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCc-------CHHHHHHhhchhhc-C
Confidence 1 1 0111 2223444444444433 89999999998865431 12345566666544 3
Q ss_pred CCeEEEEEecCCC---CCCChhhhccCCcc-eEEEecCCChHHHHHHHHHHhcC-C--CCCCchhhhHHhhhcC---CCc
Q 004267 342 RAHVIVIGATNRP---NSIDPALRRFGRFD-REIDIGVPDEVGRLEVLRIHTKN-M--KLSDDVDLERIAKDTH---GYV 411 (764)
Q Consensus 342 ~~~v~vI~atn~~---~~ld~al~r~~rf~-~~i~i~~p~~~~R~~il~~~~~~-~--~l~~~~~l~~la~~t~---g~~ 411 (764)
..++.+|++++.+ ..+++.+.+ ||. +.+.++.++.++..+++...+.. . ....+..+..++..+. |..
T Consensus 161 ~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~ 238 (386)
T 2qby_A 161 KSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDA 238 (386)
T ss_dssp C--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCH
T ss_pred CCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCH
Confidence 4578888888876 456777776 554 58999999999999999876542 1 1223334666776665 654
Q ss_pred hHHHHHHHHHHHHHH
Q 004267 412 GADLAALCTEAALQC 426 (764)
Q Consensus 412 ~~dl~~l~~~a~~~~ 426 (764)
. .+..++..+...+
T Consensus 239 r-~~~~ll~~a~~~a 252 (386)
T 2qby_A 239 R-RALDLLRVSGEIA 252 (386)
T ss_dssp H-HHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHH
Confidence 3 3445666665443
No 141
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.37 E-value=4.4e-13 Score=139.33 Aligned_cols=194 Identities=22% Similarity=0.239 Sum_probs=113.7
Q ss_pred cccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhC---CeeEEEecccchhc-
Q 004267 479 SWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPELLTM- 554 (764)
Q Consensus 479 ~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~---~~~i~v~~~~l~~~- 554 (764)
+|+++.|.+...+.+.+.+.... ..+.+++|+||||||||++|++++..+. .+|+.++++.+...
T Consensus 4 ~f~~~ig~~~~~~~~~~~~~~~~-----------~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~ 72 (265)
T 2bjv_A 4 YKDNLLGEANSFLEVLEQVSHLA-----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL 72 (265)
T ss_dssp ------CCCHHHHHHHHHHHHHT-----------TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHH
T ss_pred ccccceeCCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhH
Confidence 56777888777666554433211 1235699999999999999999999864 68999998876321
Q ss_pred ----ccCcchH-------HHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCC-------
Q 004267 555 ----WFGESEA-------NVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS------- 616 (764)
Q Consensus 555 ----~~g~se~-------~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~------- 616 (764)
.+|.... .....|..+ ...++|||||+.+.. .+...|+..|+...
T Consensus 73 ~~~~l~g~~~~~~~g~~~~~~~~l~~a---~~~~l~lDEi~~l~~--------------~~q~~Ll~~l~~~~~~~~g~~ 135 (265)
T 2bjv_A 73 LDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAPM--------------MVQEKLLRVIEYGELERVGGS 135 (265)
T ss_dssp HHHHHHCCC---------CCCCHHHHT---TTSEEEEESGGGSCH--------------HHHHHHHHHHHHCEECCCCC-
T ss_pred HHHHhcCCcccccccccccccchhhhc---CCcEEEEechHhcCH--------------HHHHHHHHHHHhCCeecCCCc
Confidence 1121100 011233333 346999999998743 23455555555320
Q ss_pred --CCCcEEEEecCCCC-------CCCCccCCCCCccc-eEEeecCCCH--HHHHHHHHHHhcc----CCCCC--ccc---
Q 004267 617 --AKKTVFIIGATNRP-------DIIDPALLRPGRLD-QLIYIPLPDE--DSRHQIFKACLRK----SPVSK--DVD--- 675 (764)
Q Consensus 617 --~~~~v~vi~aTn~~-------~~ld~allrpgRf~-~~i~~~~p~~--~~r~~Il~~~~~~----~~~~~--~~~--- 675 (764)
...++.+|+|||.+ ..+++++.. ||+ ..+.+|+.+. ++...+++.++++ .+... .++
T Consensus 136 ~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a 213 (265)
T 2bjv_A 136 QPLQVNVRLVCATNADLPAMVNEGTFRADLLD--ALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERA 213 (265)
T ss_dssp -CEECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHH
T ss_pred ccccCCeEEEEecCcCHHHHHHcCCccHHHHH--hhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHH
Confidence 12357889999974 246778877 886 4567776654 5556665555432 22211 222
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHH
Q 004267 676 LRALAKYTQGFSGADITEICQRACKYA 702 (764)
Q Consensus 676 l~~la~~~~g~sg~di~~~~~~a~~~a 702 (764)
+..|....-..+.+++.++++.++..+
T Consensus 214 ~~~L~~~~~~gn~reL~~~l~~~~~~~ 240 (265)
T 2bjv_A 214 RETLLNYRWPGNIRELKNVVERSVYRH 240 (265)
T ss_dssp HHHHHHSCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHhC
Confidence 344444433346679999998877543
No 142
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.37 E-value=3.2e-12 Score=138.61 Aligned_cols=186 Identities=16% Similarity=0.230 Sum_probs=125.0
Q ss_pred ccccccccchhhhhccccee-eccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHh-C--C------------
Q 004267 478 VSWEDIGGLENVKRELQETV-QYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC-Q--A------------ 541 (764)
Q Consensus 478 v~~~~i~g~~~~k~~l~~~v-~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~-~--~------------ 541 (764)
.+|+++.|.+.+.+.+...+ .. + ..+. ++|+|||||||||+++++|+.+ + .
T Consensus 11 ~~~~~~vg~~~~~~~l~~~~~~~-----------~-~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~ 77 (354)
T 1sxj_E 11 KSLNALSHNEELTNFLKSLSDQP-----------R-DLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVT 77 (354)
T ss_dssp CSGGGCCSCHHHHHHHHTTTTCT-----------T-CCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC----------
T ss_pred CCHHHhcCCHHHHHHHHHHHhhC-----------C-CCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecc
Confidence 45788999999888877654 21 1 2223 9999999999999999999953 1 1
Q ss_pred --------------eeEEEecccchhcccCc-chHHHHHHHHHHh--------------hCCCeEEEEecccchhhccCC
Q 004267 542 --------------NFISVKGPELLTMWFGE-SEANVREIFDKAR--------------QSAPCVLFFDELDSIATQRGS 592 (764)
Q Consensus 542 --------------~~i~v~~~~l~~~~~g~-se~~i~~~f~~a~--------------~~~p~iifiDEid~l~~~r~~ 592 (764)
.++.+++++. +. ....+++.++.+. ...|.++++||++.+-.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~---- 148 (354)
T 1sxj_E 78 ASNRKLELNVVSSPYHLEITPSDM-----GNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTK---- 148 (354)
T ss_dssp --------CCEECSSEEEECCC---------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCH----
T ss_pred cccccceeeeecccceEEecHhhc-----CCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCH----
Confidence 1222222211 11 1113555555442 22577999999998522
Q ss_pred CCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCC-
Q 004267 593 SVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS- 671 (764)
Q Consensus 593 ~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~- 671 (764)
...+.|+..|+... .+..+|.+||.++.+.+++.+ |+ ..+.|++|+.+++.++++..+++.++.
T Consensus 149 ----------~~~~~L~~~le~~~--~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 213 (354)
T 1sxj_E 149 ----------DAQAALRRTMEKYS--KNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVVTNERIQL 213 (354)
T ss_dssp ----------HHHHHHHHHHHHST--TTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCEE
T ss_pred ----------HHHHHHHHHHHhhc--CCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHHHHcCCCC
Confidence 23455566565432 357788888999999999887 88 789999999999999999988665543
Q ss_pred C-cccHHHHHHHCCCCCHHHHHHHHHHHHHH
Q 004267 672 K-DVDLRALAKYTQGFSGADITEICQRACKY 701 (764)
Q Consensus 672 ~-~~~l~~la~~~~g~sg~di~~~~~~a~~~ 701 (764)
+ +..+..+++.+.| +.+++.++++.+...
T Consensus 214 ~~~~~l~~i~~~~~G-~~r~a~~~l~~~~~~ 243 (354)
T 1sxj_E 214 ETKDILKRIAQASNG-NLRVSLLMLESMALN 243 (354)
T ss_dssp CCSHHHHHHHHHHTT-CHHHHHHHHTHHHHT
T ss_pred CcHHHHHHHHHHcCC-CHHHHHHHHHHHHHh
Confidence 2 3457788887754 667777777666543
No 143
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.34 E-value=7.9e-12 Score=134.28 Aligned_cols=152 Identities=23% Similarity=0.269 Sum_probs=105.2
Q ss_pred cccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEech------hhhh
Q 004267 207 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGP------EIMS 280 (764)
Q Consensus 207 ~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~------~l~~ 280 (764)
++++.|.++.++.+...+.. +.++||+||||||||++++++++.++..++.+++. ++.+
T Consensus 26 ~~~i~g~~~~~~~l~~~l~~---------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g 90 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGICT---------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIG 90 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHHH---------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHE
T ss_pred ccceeCcHHHHHHHHHHHHc---------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCC
Confidence 45788888888777655532 35899999999999999999999999999888863 2222
Q ss_pred hccchhHHHHHHHHHHHHhcC---CeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcc---------cCCCeEEEE
Q 004267 281 KLAGESESNLRKAFEEAEKNA---PSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGL---------KSRAHVIVI 348 (764)
Q Consensus 281 ~~~g~~~~~l~~vf~~a~~~~---p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~---------~~~~~v~vI 348 (764)
........ ..|. .... .+++||||++.+.+ .....|+..|+.. .....+++|
T Consensus 91 ~~~~~~~~---~~~~--~~~g~l~~~vl~iDEi~~~~~-----------~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~vi 154 (331)
T 2r44_A 91 TMIYNQHK---GNFE--VKKGPVFSNFILADEVNRSPA-----------KVQSALLECMQEKQVTIGDTTYPLDNPFLVL 154 (331)
T ss_dssp EEEEETTT---TEEE--EEECTTCSSEEEEETGGGSCH-----------HHHHHHHHHHHHSEEEETTEEEECCSSCEEE
T ss_pred ceeecCCC---CceE--eccCcccccEEEEEccccCCH-----------HHHHHHHHHHhcCceeeCCEEEECCCCEEEE
Confidence 11100000 0000 0011 26999999998632 2345566666532 123467788
Q ss_pred EecCCCC-----CCChhhhccCCcceEEEecCCChHHHHHHHHHHhcC
Q 004267 349 GATNRPN-----SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKN 391 (764)
Q Consensus 349 ~atn~~~-----~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~ 391 (764)
+++|..+ .+++++.+ ||...+.++.|+.+++.+|++.+...
T Consensus 155 at~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 155 ATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp EEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred EecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhcccc
Confidence 8888543 38999998 99888999999999999999987654
No 144
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.34 E-value=1.7e-11 Score=132.44 Aligned_cols=159 Identities=22% Similarity=0.351 Sum_probs=98.0
Q ss_pred CCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEE----Eechhh
Q 004267 203 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFC----INGPEI 278 (764)
Q Consensus 203 ~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~----v~~~~l 278 (764)
++.+|+++.|.+..++.+...... ....++||+||||||||++|++++..++...+. +++...
T Consensus 19 ~~~~f~~i~G~~~~~~~l~~~~~~-------------~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 85 (350)
T 1g8p_A 19 PVFPFSAIVGQEDMKLALLLTAVD-------------PGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNV 85 (350)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHC-------------GGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSG
T ss_pred CCCCchhccChHHHHHHHHHHhhC-------------CCCceEEEECCCCccHHHHHHHHHHhCcccccccccccccccc
Confidence 456899999999876654333221 123469999999999999999999998642110 011000
Q ss_pred hh---------------------hccchhHHHH------HHHHHHH---------HhcCCeEEEEccccccCCCCCCCch
Q 004267 279 MS---------------------KLAGESESNL------RKAFEEA---------EKNAPSIIFIDEIDSIAPKREKTHG 322 (764)
Q Consensus 279 ~~---------------------~~~g~~~~~l------~~vf~~a---------~~~~p~il~iDEid~l~~~~~~~~~ 322 (764)
.. ...+.+...+ ...+... ....++++||||++.+.+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~------ 159 (350)
T 1g8p_A 86 EMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDH------ 159 (350)
T ss_dssp GGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHH------
T ss_pred ccccchhhhhccccccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCHH------
Confidence 00 0001111110 1112111 1123689999999987432
Q ss_pred HHHHHHHHHHHHHhhcc----cC-------CCeEEEEEecCCCC-CCChhhhccCCcceEEEecCC-ChHHHHHHHHH
Q 004267 323 EVERRIVSQLLTLMDGL----KS-------RAHVIVIGATNRPN-SIDPALRRFGRFDREIDIGVP-DEVGRLEVLRI 387 (764)
Q Consensus 323 ~~~~~v~~~Ll~~ld~~----~~-------~~~v~vI~atn~~~-~ld~al~r~~rf~~~i~i~~p-~~~~R~~il~~ 387 (764)
....|+..++.- .. ..++++|+++|..+ .+++++.+ ||+..+.++.| +.+.+.+|++.
T Consensus 160 -----~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~il~~ 230 (350)
T 1g8p_A 160 -----IVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEVIRR 230 (350)
T ss_dssp -----HHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHHHHH
T ss_pred -----HHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHH
Confidence 334566655531 11 13688999999744 89999998 99988999999 56777777765
No 145
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.34 E-value=9.8e-12 Score=134.49 Aligned_cols=178 Identities=21% Similarity=0.269 Sum_probs=122.5
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhC------CeEEEEe
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG------AFFFCIN 274 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~------~~~i~v~ 274 (764)
...+.+|+++.|.++.++.+...+.. ....+++|+||||||||++++++++.++ ..++.++
T Consensus 30 k~~p~~~~~i~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~ 96 (353)
T 1sxj_D 30 KYRPKNLDEVTAQDHAVTVLKKTLKS-------------ANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELN 96 (353)
T ss_dssp HTCCSSTTTCCSCCTTHHHHHHHTTC-------------TTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEEC
T ss_pred hcCCCCHHHhhCCHHHHHHHHHHHhc-------------CCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEc
Confidence 45667889999999999888877643 1123499999999999999999999864 3467777
Q ss_pred chhhhhhccchhHHHHHHHHHHHHh----------------cCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhc
Q 004267 275 GPEIMSKLAGESESNLRKAFEEAEK----------------NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDG 338 (764)
Q Consensus 275 ~~~l~~~~~g~~~~~l~~vf~~a~~----------------~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~ 338 (764)
+.+..+ ...++..+..... ..+.++||||++.+.+. ....|+..++.
T Consensus 97 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~-----------~~~~Ll~~le~ 159 (353)
T 1sxj_D 97 ASDERG------ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTAD-----------AQSALRRTMET 159 (353)
T ss_dssp SSSCCC------HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHH-----------HHHHHHHHHHH
T ss_pred cccccc------hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHH-----------HHHHHHHHHHh
Confidence 654311 1122222222111 24569999999987532 23557777776
Q ss_pred ccCCCeEEEEEecCCCCCCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCC-CCchhhhHHhhhcCCCchH
Q 004267 339 LKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDDVDLERIAKDTHGYVGA 413 (764)
Q Consensus 339 ~~~~~~v~vI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l-~~~~~l~~la~~t~g~~~~ 413 (764)
... ...+|.++|.+..+.+.+++ |+. .+.++.|+.++...++...+....+ .++..++.++..+.|....
T Consensus 160 ~~~--~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~ 230 (353)
T 1sxj_D 160 YSG--VTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRR 230 (353)
T ss_dssp TTT--TEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHH
T ss_pred cCC--CceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHH
Confidence 543 34555577888889999988 774 7899999999999988877654332 2344578888888876443
No 146
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.34 E-value=3.4e-11 Score=131.88 Aligned_cols=199 Identities=20% Similarity=0.187 Sum_probs=131.7
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCc--eEEEECCCCCCHHHHHHHHHHHh----CCeEEEEechhhh
Q 004267 206 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPK--GILLYGPPGSGKTLIARAVANET----GAFFFCINGPEIM 279 (764)
Q Consensus 206 ~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~--~vLL~GppGtGKTtLar~la~~l----~~~~i~v~~~~l~ 279 (764)
..+++.|.+++++.+.+.+...+.. ..+. .++|+||||||||++++++++.+ +..++.+++....
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~~~---------~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~ 85 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWLRN---------PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYR 85 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHHS---------TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCC
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcC---------CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCC
Confidence 3377999999999998887642211 2334 89999999999999999999998 5678888865432
Q ss_pred h------hc----------cchhH-HHHHHHHHHHHh-cCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccC
Q 004267 280 S------KL----------AGESE-SNLRKAFEEAEK-NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKS 341 (764)
Q Consensus 280 ~------~~----------~g~~~-~~l~~vf~~a~~-~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~ 341 (764)
+ .. .+... .....+...... ..|.+|+|||++.+- ......|+.++.....
T Consensus 86 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~-----------~~~~~~L~~~~~~~~~ 154 (389)
T 1fnn_A 86 NFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLA-----------PDILSTFIRLGQEADK 154 (389)
T ss_dssp SHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSC-----------HHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccc-----------hHHHHHHHHHHHhCCC
Confidence 1 00 11111 222222222222 458899999999871 2345666666655432
Q ss_pred --CCeEEEEEecCCC---CCCChhhhccCCcce-EEEecCCChHHHHHHHHHHhcC---CCCCCchhhhHHhhhc-----
Q 004267 342 --RAHVIVIGATNRP---NSIDPALRRFGRFDR-EIDIGVPDEVGRLEVLRIHTKN---MKLSDDVDLERIAKDT----- 407 (764)
Q Consensus 342 --~~~v~vI~atn~~---~~ld~al~r~~rf~~-~i~i~~p~~~~R~~il~~~~~~---~~l~~~~~l~~la~~t----- 407 (764)
..++.+|+++|.+ +.+++.+.+ ||.. .+.++.++.++..+++...+.. ....++..++.++..+
T Consensus 155 ~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 232 (389)
T 1fnn_A 155 LGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTP 232 (389)
T ss_dssp HSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSST
T ss_pred CCcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhccc
Confidence 1477888888887 567887766 6654 7999999999999998876543 1123444577888888
Q ss_pred ----CCCchHHHHHHHHHHHHHHH
Q 004267 408 ----HGYVGADLAALCTEAALQCI 427 (764)
Q Consensus 408 ----~g~~~~dl~~l~~~a~~~~~ 427 (764)
.|. ...+..++..+...+.
T Consensus 233 ~~~~~G~-~r~~~~~l~~a~~~a~ 255 (389)
T 1fnn_A 233 LDTNRGD-ARLAIDILYRSAYAAQ 255 (389)
T ss_dssp TCTTSCC-HHHHHHHHHHHHHHHH
T ss_pred CCCCCCc-HHHHHHHHHHHHHHHH
Confidence 343 3455666666665443
No 147
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.33 E-value=7.9e-12 Score=133.09 Aligned_cols=180 Identities=19% Similarity=0.209 Sum_probs=121.7
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHh-----CCeEEEEec
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET-----GAFFFCING 275 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l-----~~~~i~v~~ 275 (764)
+..+.+|+++.|.+..++.+++.+.. ....+++|+||||||||++++++++.+ +..++.+++
T Consensus 10 k~~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 76 (319)
T 2chq_A 10 KYRPRTLDEVVGQDEVIQRLKGYVER-------------KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNA 76 (319)
T ss_dssp TTSCSSGGGSCSCHHHHHHHHTTTTT-------------TCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEET
T ss_pred hcCCCCHHHHhCCHHHHHHHHHHHhC-------------CCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeC
Confidence 35566889999999999888776543 122349999999999999999999986 234677887
Q ss_pred hhhhhhccchhHHHHHHHHHH-HH-hcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCC
Q 004267 276 PEIMSKLAGESESNLRKAFEE-AE-KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNR 353 (764)
Q Consensus 276 ~~l~~~~~g~~~~~l~~vf~~-a~-~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~ 353 (764)
++..+. ......+...... +. ...+.+++|||+|.+.. .....|+..++.. ...+.+|++||.
T Consensus 77 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-----------~~~~~L~~~le~~--~~~~~~i~~~~~ 141 (319)
T 2chq_A 77 SDERGI--DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA-----------DAQAALRRTMEMY--SKSCRFILSCNY 141 (319)
T ss_dssp TSTTCT--TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH-----------HHHHTTGGGTSSS--SSSEEEEEEESC
T ss_pred ccccCh--HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH-----------HHHHHHHHHHHhc--CCCCeEEEEeCC
Confidence 654221 1111122221100 01 14478999999998742 1224455555543 246778888899
Q ss_pred CCCCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCC-CchhhhHHhhhcCCCc
Q 004267 354 PNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYV 411 (764)
Q Consensus 354 ~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~~ 411 (764)
+..+.+.+++ |+. .+.++.|+.++..+++...+....+. ++..+..++..+.|..
T Consensus 142 ~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~ 197 (319)
T 2chq_A 142 VSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDF 197 (319)
T ss_dssp GGGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTTCH
T ss_pred hhhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 8899999987 774 79999999999999998777654432 3345677777666543
No 148
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.32 E-value=1e-12 Score=139.28 Aligned_cols=169 Identities=22% Similarity=0.279 Sum_probs=107.3
Q ss_pred CcceeeeCCCCCChhHHHHHHHHHh---CCeeEEEecccchh-----cccCcch-------HHHHHHHHHHhhCCCeEEE
Q 004267 515 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLT-----MWFGESE-------ANVREIFDKARQSAPCVLF 579 (764)
Q Consensus 515 ~~gill~GppGtGKT~lak~lA~~~---~~~~i~v~~~~l~~-----~~~g~se-------~~i~~~f~~a~~~~p~iif 579 (764)
..++||+||||||||++|++++..+ +.+|+.++++.+.. ..+|... ......|..|.. +++|
T Consensus 25 ~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~lfg~~~g~~tg~~~~~~g~~~~a~~---g~L~ 101 (304)
T 1ojl_A 25 DATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADG---GTLF 101 (304)
T ss_dssp TSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHHTCCCSSCCC---CCCCCHHHHHTT---SEEE
T ss_pred CCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHHhcCccccccCchhhhhcCHHHhcCC---CEEE
Confidence 4569999999999999999999975 57899999876532 1122110 112345555543 5999
Q ss_pred EecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCC---------CCCcEEEEecCCCC-------CCCCccCCCCCcc
Q 004267 580 FDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS---------AKKTVFIIGATNRP-------DIIDPALLRPGRL 643 (764)
Q Consensus 580 iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~---------~~~~v~vi~aTn~~-------~~ld~allrpgRf 643 (764)
||||+.+.. .+...|+..|+... ...++.||+|||++ ..+++.|.. ||
T Consensus 102 LDEi~~l~~--------------~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v~~g~fr~~L~~--Rl 165 (304)
T 1ojl_A 102 LDEIGDISP--------------LMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYY--RL 165 (304)
T ss_dssp EESCTTCCH--------------HHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHHHHTSSCHHHHH--HH
T ss_pred EeccccCCH--------------HHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHHHHHhCCcHHHHHh--hc
Confidence 999999743 23455666665432 12357899999975 234555655 77
Q ss_pred c-eEEeecCCC--HHHHHHHHHHHhcc----CC---CC-CcccHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q 004267 644 D-QLIYIPLPD--EDSRHQIFKACLRK----SP---VS-KDVDLRALAKYTQGFSGADITEICQRACKYA 702 (764)
Q Consensus 644 ~-~~i~~~~p~--~~~r~~Il~~~~~~----~~---~~-~~~~l~~la~~~~g~sg~di~~~~~~a~~~a 702 (764)
. ..|.+|+.. .++...+++.++++ .+ .. .+.-+..|..+.-..+.+++.++++.|+..+
T Consensus 166 ~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~~wpGnvReL~~~l~~~~~~~ 235 (304)
T 1ojl_A 166 NVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHYDWPGNIRELENAIERAVVLL 235 (304)
T ss_dssp SSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHCCCSSHHHHHHHHHHHHHHHC
T ss_pred CeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhC
Confidence 4 346666665 35555666665532 11 11 1223555666553446789999999888765
No 149
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.32 E-value=2.6e-11 Score=129.26 Aligned_cols=179 Identities=17% Similarity=0.186 Sum_probs=125.3
Q ss_pred CCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHh-----CCeEEEEech
Q 004267 202 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET-----GAFFFCINGP 276 (764)
Q Consensus 202 ~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l-----~~~~i~v~~~ 276 (764)
..+..++++.|.+..++.+.+.+.. ....+++|+||||+|||+++++++..+ +..++.+++.
T Consensus 15 ~~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 81 (323)
T 1sxj_B 15 YRPQVLSDIVGNKETIDRLQQIAKD-------------GNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNAS 81 (323)
T ss_dssp TCCSSGGGCCSCTHHHHHHHHHHHS-------------CCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTT
T ss_pred cCCCCHHHHHCCHHHHHHHHHHHHc-------------CCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCc
Confidence 4556788999999999999888753 112249999999999999999999986 2346777765
Q ss_pred hhhhhccchhHHHHHHHHHHHH-------hcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEE
Q 004267 277 EIMSKLAGESESNLRKAFEEAE-------KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIG 349 (764)
Q Consensus 277 ~l~~~~~g~~~~~l~~vf~~a~-------~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~ 349 (764)
+.. ....++..++... ...+.+++|||+|.+... ....|+..++... ..+.+|.
T Consensus 82 ~~~------~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~-----------~~~~L~~~le~~~--~~~~~il 142 (323)
T 1sxj_B 82 DDR------GIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAG-----------AQQALRRTMELYS--NSTRFAF 142 (323)
T ss_dssp SCC------SHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHH-----------HHHTTHHHHHHTT--TTEEEEE
T ss_pred ccc------ChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHH-----------HHHHHHHHHhccC--CCceEEE
Confidence 421 1344555555554 234789999999987431 2344566665533 3566677
Q ss_pred ecCCCCCCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCC-CchhhhHHhhhcCCCchHHH
Q 004267 350 ATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADL 415 (764)
Q Consensus 350 atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl 415 (764)
+|+.+..+.+.+++ |+. .+.++.|+.++..+++...+....+. ++..+..++..+.|....-+
T Consensus 143 ~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~a~ 206 (323)
T 1sxj_B 143 ACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAI 206 (323)
T ss_dssp EESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHH
T ss_pred EeCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 88888889999987 664 79999999999999998765432221 23456778888877554433
No 150
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.31 E-value=5.4e-11 Score=127.05 Aligned_cols=176 Identities=23% Similarity=0.276 Sum_probs=121.8
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhC-----CeEEEEec
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG-----AFFFCING 275 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~-----~~~i~v~~ 275 (764)
...+.+|+++.|.++.++.+..++... ...+++|+||||||||++++++++.+. ..++.+++
T Consensus 18 k~~p~~~~~~~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~ 84 (327)
T 1iqp_A 18 KYRPQRLDDIVGQEHIVKRLKHYVKTG-------------SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNA 84 (327)
T ss_dssp HTCCCSTTTCCSCHHHHHHHHHHHHHT-------------CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEET
T ss_pred ccCCCCHHHhhCCHHHHHHHHHHHHcC-------------CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeec
Confidence 355668899999999999998877531 223599999999999999999999863 23677776
Q ss_pred hhhhhhccchhHHHHHHHHHHHHh------cCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEE
Q 004267 276 PEIMSKLAGESESNLRKAFEEAEK------NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIG 349 (764)
Q Consensus 276 ~~l~~~~~g~~~~~l~~vf~~a~~------~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~ 349 (764)
.+..+. ..++..+..... ..+.+++|||+|.+.+ .....|+..++... ..+.+|.
T Consensus 85 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-----------~~~~~L~~~le~~~--~~~~~i~ 145 (327)
T 1iqp_A 85 SDERGI------NVIREKVKEFARTKPIGGASFKIIFLDEADALTQ-----------DAQQALRRTMEMFS--SNVRFIL 145 (327)
T ss_dssp TCHHHH------HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCH-----------HHHHHHHHHHHHTT--TTEEEEE
T ss_pred cccCch------HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCH-----------HHHHHHHHHHHhcC--CCCeEEE
Confidence 553221 112222222211 4578999999998742 12355666666543 3566777
Q ss_pred ecCCCCCCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCC-CCchhhhHHhhhcCCCc
Q 004267 350 ATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDDVDLERIAKDTHGYV 411 (764)
Q Consensus 350 atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l-~~~~~l~~la~~t~g~~ 411 (764)
+++.+..+.+.+.+ |+. .+.++.|+.++..+++...+....+ .++..++.++..+.|..
T Consensus 146 ~~~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~ 205 (327)
T 1iqp_A 146 SCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDM 205 (327)
T ss_dssp EESCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTTCH
T ss_pred EeCCccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCCCH
Confidence 88888889999887 774 7899999999998888877654432 23345677777776643
No 151
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.27 E-value=6.6e-11 Score=128.13 Aligned_cols=178 Identities=16% Similarity=0.257 Sum_probs=117.3
Q ss_pred cCCCCCcccccChHHHHHHHHHHH-HccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCC-----------
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELV-ELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA----------- 268 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i-~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~----------- 268 (764)
+..+.+|+++.|.+..++.++..+ .. ....+++|+|||||||||+++++++.+..
T Consensus 7 kyrP~~~~~~vg~~~~~~~l~~~~~~~-------------~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~ 73 (354)
T 1sxj_E 7 KYRPKSLNALSHNEELTNFLKSLSDQP-------------RDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVR 73 (354)
T ss_dssp TTCCCSGGGCCSCHHHHHHHHTTTTCT-------------TCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------
T ss_pred ccCCCCHHHhcCCHHHHHHHHHHHhhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecce
Confidence 455678899999999988887665 21 11223999999999999999999996421
Q ss_pred ------------------eEEEEechhhhhhccchhHHHHHHHHHHHH--------------hcCCeEEEEccccccCCC
Q 004267 269 ------------------FFFCINGPEIMSKLAGESESNLRKAFEEAE--------------KNAPSIIFIDEIDSIAPK 316 (764)
Q Consensus 269 ------------------~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~--------------~~~p~il~iDEid~l~~~ 316 (764)
.++.+++.+.. ......++..+..+. ...|.+++|||++.+-
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~-- 147 (354)
T 1sxj_E 74 QFVTASNRKLELNVVSSPYHLEITPSDMG----NNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLT-- 147 (354)
T ss_dssp ------------CCEECSSEEEECCC--------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSC--
T ss_pred eecccccccceeeeecccceEEecHhhcC----CcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccC--
Confidence 11222221110 001112444444432 2357799999998852
Q ss_pred CCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCChhhhccCCcceEEEecCCChHHHHHHHHHHhcC--CCC
Q 004267 317 REKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKN--MKL 394 (764)
Q Consensus 317 ~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~--~~l 394 (764)
....+.|+..++.... +..+|.+||.++.+.+.+++ |+ ..+.++.|+.++..++++..+.. ..+
T Consensus 148 ---------~~~~~~L~~~le~~~~--~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 213 (354)
T 1sxj_E 148 ---------KDAQAALRRTMEKYSK--NIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVVTNERIQL 213 (354)
T ss_dssp ---------HHHHHHHHHHHHHSTT--TEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCEE
T ss_pred ---------HHHHHHHHHHHHhhcC--CCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHHHHcCCCC
Confidence 1233566777766543 46777788999999999987 77 77999999999999999876643 333
Q ss_pred CCchhhhHHhhhcCCCc
Q 004267 395 SDDVDLERIAKDTHGYV 411 (764)
Q Consensus 395 ~~~~~l~~la~~t~g~~ 411 (764)
..+..+..++..+.|-.
T Consensus 214 ~~~~~l~~i~~~~~G~~ 230 (354)
T 1sxj_E 214 ETKDILKRIAQASNGNL 230 (354)
T ss_dssp CCSHHHHHHHHHHTTCH
T ss_pred CcHHHHHHHHHHcCCCH
Confidence 31445777887776643
No 152
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.27 E-value=4.7e-11 Score=128.39 Aligned_cols=159 Identities=18% Similarity=0.229 Sum_probs=113.2
Q ss_pred CCcceeeeCCCCCChhHHHHHHHHHhCC------------------------eeEEEecccchhcccCcchHHHHHHHHH
Q 004267 514 PSKGVLFYGPPGCGKTLLAKAIANECQA------------------------NFISVKGPELLTMWFGESEANVREIFDK 569 (764)
Q Consensus 514 ~~~gill~GppGtGKT~lak~lA~~~~~------------------------~~i~v~~~~l~~~~~g~se~~i~~~f~~ 569 (764)
.+..+||+||||+|||++|+++|..+.. .++.+.+.+- + -..+...++.+++.
T Consensus 23 ~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~-~--~~~~i~~ir~l~~~ 99 (334)
T 1a5t_A 23 GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG-K--NTLGVDAVREVTEK 99 (334)
T ss_dssp CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT-C--SSBCHHHHHHHHHH
T ss_pred cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc-C--CCCCHHHHHHHHHH
Confidence 4456999999999999999999997643 2333333210 0 01234568888888
Q ss_pred HhhC----CCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCCCCCccCCCCCccce
Q 004267 570 ARQS----APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQ 645 (764)
Q Consensus 570 a~~~----~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~ 645 (764)
+... .+.|+++||+|.+.. ...+.||..|+. +..++++|.+||.++.+.|++++ |+.
T Consensus 100 ~~~~~~~~~~kvviIdead~l~~--------------~a~naLLk~lEe--p~~~~~~Il~t~~~~~l~~ti~S--Rc~- 160 (334)
T 1a5t_A 100 LNEHARLGGAKVVWVTDAALLTD--------------AAANALLKTLEE--PPAETWFFLATREPERLLATLRS--RCR- 160 (334)
T ss_dssp TTSCCTTSSCEEEEESCGGGBCH--------------HHHHHHHHHHTS--CCTTEEEEEEESCGGGSCHHHHT--TSE-
T ss_pred HhhccccCCcEEEEECchhhcCH--------------HHHHHHHHHhcC--CCCCeEEEEEeCChHhCcHHHhh--cce-
Confidence 7643 368999999999732 346778888885 34567788888889999999998 885
Q ss_pred EEeecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHH
Q 004267 646 LIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRAC 699 (764)
Q Consensus 646 ~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~sg~di~~~~~~a~ 699 (764)
.+.|++|+.++..++++... .+ ++..+..+++.+.| +.+.+.++++.+.
T Consensus 161 ~~~~~~~~~~~~~~~L~~~~---~~-~~~~~~~l~~~s~G-~~r~a~~~l~~~~ 209 (334)
T 1a5t_A 161 LHYLAPPPEQYAVTWLSREV---TM-SQDALLAALRLSAG-SPGAALALFQGDN 209 (334)
T ss_dssp EEECCCCCHHHHHHHHHHHC---CC-CHHHHHHHHHHTTT-CHHHHHHTTSSHH
T ss_pred eeeCCCCCHHHHHHHHHHhc---CC-CHHHHHHHHHHcCC-CHHHHHHHhccch
Confidence 79999999999999988775 22 33456677777765 5566655555443
No 153
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.27 E-value=2.4e-12 Score=138.92 Aligned_cols=170 Identities=21% Similarity=0.283 Sum_probs=114.4
Q ss_pred ccccccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCC-----eeEEEecccch
Q 004267 478 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA-----NFISVKGPELL 552 (764)
Q Consensus 478 v~~~~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~-----~~i~v~~~~l~ 552 (764)
..|+++.|++.+.+.|...+.. | ..+ +++|+||||||||++|+++|+.+.. .++.++.++..
T Consensus 22 ~~~~~~~g~~~~~~~L~~~i~~-----------g-~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~ 88 (340)
T 1sxj_C 22 ETLDEVYGQNEVITTVRKFVDE-----------G-KLP-HLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDR 88 (340)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHT-----------T-CCC-CEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCC
T ss_pred CcHHHhcCcHHHHHHHHHHHhc-----------C-CCc-eEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccc
Confidence 4578888888888877655431 1 122 3999999999999999999998532 35666665421
Q ss_pred hcccCcchHHHHHHHHHHh------hCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEec
Q 004267 553 TMWFGESEANVREIFDKAR------QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGA 626 (764)
Q Consensus 553 ~~~~g~se~~i~~~f~~a~------~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~a 626 (764)
| ...++....... ...+.|+++||+|.+.. ...+.|+..|+... ..+.+|++
T Consensus 89 ----~--~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~--------------~~~~~L~~~le~~~--~~~~~il~ 146 (340)
T 1sxj_C 89 ----G--IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTN--------------AAQNALRRVIERYT--KNTRFCVL 146 (340)
T ss_dssp ----S--HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCH--------------HHHHHHHHHHHHTT--TTEEEEEE
T ss_pred ----c--HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCH--------------HHHHHHHHHHhcCC--CCeEEEEE
Confidence 1 233444333222 12368999999998742 23456666666543 34566777
Q ss_pred CCCCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCCC-cccHHHHHHHCCC
Q 004267 627 TNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSK-DVDLRALAKYTQG 685 (764)
Q Consensus 627 Tn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~-~~~l~~la~~~~g 685 (764)
||.++.+.+++.+ |+. .+.|++++.++..+++...++...+.- +..+..++..+.|
T Consensus 147 ~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G 203 (340)
T 1sxj_C 147 ANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNG 203 (340)
T ss_dssp ESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTT
T ss_pred ecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 8999999999998 886 789999999999999988885443321 2235556665543
No 154
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.25 E-value=3.4e-11 Score=135.32 Aligned_cols=151 Identities=20% Similarity=0.237 Sum_probs=91.6
Q ss_pred cccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCC--eEEEEec-----hhhhhh
Q 004267 209 DVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA--FFFCING-----PEIMSK 281 (764)
Q Consensus 209 ~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~--~~i~v~~-----~~l~~~ 281 (764)
.+.|.++.++.+...+. .+.+|||+||||||||+||+++|..++. +|..+++ .++.+.
T Consensus 23 ~ivGq~~~i~~l~~al~---------------~~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~ 87 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAAL---------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP 87 (500)
T ss_dssp TCSSCHHHHHHHHHHHH---------------HTCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCC
T ss_pred hhHHHHHHHHHHHHHHh---------------cCCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCc
Confidence 36777777766654432 2468999999999999999999998843 4555444 233332
Q ss_pred ccchhHHHHHHHHHHHHhc---CCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcc---------cCCCeEEEEE
Q 004267 282 LAGESESNLRKAFEEAEKN---APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGL---------KSRAHVIVIG 349 (764)
Q Consensus 282 ~~g~~~~~l~~vf~~a~~~---~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~---------~~~~~v~vI~ 349 (764)
+.+..... ...|..+... .++|+|||||+.+. ..+...|+..|+.- ..... ++|+
T Consensus 88 ~~~~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~r~~-----------~~~q~~LL~~lee~~v~i~G~~~~~~~~-~iI~ 154 (500)
T 3nbx_X 88 LSIQALKD-EGRYERLTSGYLPEAEIVFLDEIWKAG-----------PAILNTLLTAINERQFRNGAHVEKIPMR-LLVA 154 (500)
T ss_dssp BC-----------CBCCTTSGGGCSEEEEESGGGCC-----------HHHHHHHHHHHHSSEEECSSSEEECCCC-EEEE
T ss_pred ccHHHHhh-chhHHhhhccCCCcceeeeHHhHhhhc-----------HHHHHHHHHHHHHHhccCCCCcCCcchh-hhhh
Confidence 22211111 1122222221 46799999997653 23456677777531 11223 4566
Q ss_pred ecCCCCC---CChhhhccCCcceEEEecCCCh-HHHHHHHHHHh
Q 004267 350 ATNRPNS---IDPALRRFGRFDREIDIGVPDE-VGRLEVLRIHT 389 (764)
Q Consensus 350 atn~~~~---ld~al~r~~rf~~~i~i~~p~~-~~R~~il~~~~ 389 (764)
+||++.. ..+++.+ ||...+.++.|+. +++.+|++.+.
T Consensus 155 ATN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~ 196 (500)
T 3nbx_X 155 ASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQ 196 (500)
T ss_dssp EESSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCC
T ss_pred ccccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhccc
Confidence 7775322 3357776 8989999999997 67888887543
No 155
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.22 E-value=1.6e-10 Score=125.85 Aligned_cols=186 Identities=19% Similarity=0.244 Sum_probs=126.6
Q ss_pred CCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCe------------
Q 004267 202 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF------------ 269 (764)
Q Consensus 202 ~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~------------ 269 (764)
..+..|+++.|.++.++.+...+... ..+..++|+||+|||||++++++++.++..
T Consensus 10 ~rp~~~~~~vg~~~~~~~L~~~l~~~------------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~ 77 (373)
T 1jr3_A 10 WRPQTFADVVGQEHVLTALANGLSLG------------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 77 (373)
T ss_dssp TCCCSTTTSCSCHHHHHHHHHHHHHT------------CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSH
T ss_pred hCCCchhhccCcHHHHHHHHHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccH
Confidence 44557889999999999998887531 224478999999999999999999988542
Q ss_pred ------------EEEEechhhhhhccchhHHHHHHHHHHHHh----cCCeEEEEccccccCCCCCCCchHHHHHHHHHHH
Q 004267 270 ------------FFCINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLL 333 (764)
Q Consensus 270 ------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll 333 (764)
++.+++..- .....++.+++.+.. ..+.+++|||+|.+.. ...+.|+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~-----------~~~~~Ll 140 (373)
T 1jr3_A 78 NCREIEQGRFVDLIEIDAASR------TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR-----------HSFNALL 140 (373)
T ss_dssp HHHHHHTSCCSSCEEEETTCS------CCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCH-----------HHHHHHH
T ss_pred HHHHHhccCCCceEEeccccc------CCHHHHHHHHHHHhhccccCCeEEEEEECcchhcH-----------HHHHHHH
Confidence 233332110 111234555555442 3468999999998732 2335666
Q ss_pred HHhhcccCCCeEEEEEecCCCCCCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCC-CchhhhHHhhhcCCCch
Q 004267 334 TLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVG 412 (764)
Q Consensus 334 ~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~-~~~~l~~la~~t~g~~~ 412 (764)
..++.. ...+++|.+|+.+..+.+.+++ |+ ..+.++.|+.++..++++..++...+. ++..+..++..+.|. .
T Consensus 141 ~~le~~--~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G~-~ 214 (373)
T 1jr3_A 141 KTLEEP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGS-L 214 (373)
T ss_dssp HHHHSC--CSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSSC-H
T ss_pred HHHhcC--CCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCCC-H
Confidence 777653 3467777788888888898887 66 678999999999999998776543322 233467788888774 3
Q ss_pred HHHHHHHHHH
Q 004267 413 ADLAALCTEA 422 (764)
Q Consensus 413 ~dl~~l~~~a 422 (764)
..+..++..+
T Consensus 215 r~~~~~l~~~ 224 (373)
T 1jr3_A 215 RDALSLTDQA 224 (373)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4455555444
No 156
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=99.22 E-value=3.2e-12 Score=107.34 Aligned_cols=75 Identities=27% Similarity=0.281 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCCCccccccccccccc
Q 004267 655 DSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRRDNPEAMDEDAAEDEVS 734 (764)
Q Consensus 655 ~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 734 (764)
++|.+||+.++++.++..++|+..||+.|+|||||||.++|++|++.|+++. ..
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~--------------------------~~ 54 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN--------------------------RY 54 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTT--------------------------CS
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc--------------------------cC
Confidence 4789999999999999899999999999999999999999999999999874 23
Q ss_pred cccHHHHHHHHHhc-CCCCCCcc
Q 004267 735 EIKAAHFEESMKFA-RRSICSDA 756 (764)
Q Consensus 735 ~i~~~~f~~a~~~~-~~s~~~~~ 756 (764)
.|+++||+.|++++ +++. +.+
T Consensus 55 ~i~~~df~~Al~~v~~~~~-~~~ 76 (82)
T 2dzn_B 55 VILQSDLEEAYATQVKTDN-TVD 76 (82)
T ss_dssp EECHHHHHHHHHTTCC-------
T ss_pred CcCHHHHHHHHHHHHcCcC-ChH
Confidence 69999999999999 4667 444
No 157
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.20 E-value=2.3e-11 Score=141.21 Aligned_cols=132 Identities=20% Similarity=0.315 Sum_probs=83.2
Q ss_pred CCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCC-------------------CCCCcEEEEecCCCC--CC
Q 004267 574 APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGM-------------------SAKKTVFIIGATNRP--DI 632 (764)
Q Consensus 574 ~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~-------------------~~~~~v~vi~aTn~~--~~ 632 (764)
.+.++||||++.+.+ .+.+.|+..|+.. .-..++.||+|||+. +.
T Consensus 201 ~~gvL~LDEi~~l~~--------------~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~~~ 266 (604)
T 3k1j_A 201 HKGVLFIDEIATLSL--------------KMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTVDK 266 (604)
T ss_dssp TTSEEEETTGGGSCH--------------HHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHHHHH
T ss_pred CCCEEEEechhhCCH--------------HHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHHHHhh
Confidence 346999999999632 3444555555421 112367899999986 68
Q ss_pred CCccCCCCCccc---eEEeecCC---CHHHHHHHHHHHhcc------CCCCCcccHHHHHHHC---CCC------CHHHH
Q 004267 633 IDPALLRPGRLD---QLIYIPLP---DEDSRHQIFKACLRK------SPVSKDVDLRALAKYT---QGF------SGADI 691 (764)
Q Consensus 633 ld~allrpgRf~---~~i~~~~p---~~~~r~~Il~~~~~~------~~~~~~~~l~~la~~~---~g~------sg~di 691 (764)
++|+|++ ||+ ..++|+.. +.+....+++.+.+. .+.-.+.-+..|++.. .|- +.+++
T Consensus 267 l~~~l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l 344 (604)
T 3k1j_A 267 MHPALRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDL 344 (604)
T ss_dssp SCHHHHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHH
T ss_pred cCHHHHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhccccccccCHHHH
Confidence 9999999 997 56676532 345566666544322 1111222345555432 442 78999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHhhhcCCCccccccccccccccccHHHHHHHHHh
Q 004267 692 TEICQRACKYAIRENIEKDIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKF 747 (764)
Q Consensus 692 ~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~ 747 (764)
.++++.|...|..+. ...|+.+|+++|++.
T Consensus 345 ~~llr~A~~~A~~~~--------------------------~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 345 GGIVRAAGDIAVKKG--------------------------KKYVEREDVIEAVKM 374 (604)
T ss_dssp HHHHHHHHHHHHHTT--------------------------CSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC--------------------------cccccHHHHHHHHHh
Confidence 999999877664322 236888888888854
No 158
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.18 E-value=1.5e-10 Score=127.90 Aligned_cols=179 Identities=16% Similarity=0.198 Sum_probs=115.4
Q ss_pred Ccceee--eCCCCCChhHHHHHHHHHh---------CCeeEEEecccch------hc---cc-------CcchHH-HHHH
Q 004267 515 SKGVLF--YGPPGCGKTLLAKAIANEC---------QANFISVKGPELL------TM---WF-------GESEAN-VREI 566 (764)
Q Consensus 515 ~~gill--~GppGtGKT~lak~lA~~~---------~~~~i~v~~~~l~------~~---~~-------g~se~~-i~~~ 566 (764)
+..++| +||+|+|||+|++.++... +..++.+++.... .. .+ |.+... ...+
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l 129 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKAL 129 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHH
Confidence 346888 9999999999999999875 4567777753321 11 01 111111 2222
Q ss_pred HHHHh-hCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCC-CC--CcEEEEecCCCCC---CCC---cc
Q 004267 567 FDKAR-QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-AK--KTVFIIGATNRPD---IID---PA 636 (764)
Q Consensus 567 f~~a~-~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~-~~--~~v~vi~aTn~~~---~ld---~a 636 (764)
.+... ...|.+|||||++.+...+. ....++..++..++... .. .++.+|++||.++ .++ +.
T Consensus 130 ~~~l~~~~~~~llvlDe~~~l~~~~~--------~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~ 201 (412)
T 1w5s_A 130 VDNLYVENHYLLVILDEFQSMLSSPR--------IAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQ 201 (412)
T ss_dssp HHHHHHHTCEEEEEEESTHHHHSCTT--------SCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHH
T ss_pred HHHHHhcCCeEEEEEeCHHHHhhccC--------cchHHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcch
Confidence 22222 34578999999999864311 12455666666555432 12 5788888888765 344 55
Q ss_pred CCCCCccceEEeecCCCHHHHHHHHHHHhccC---CCCCcccHHHHHHHCC------CCCHHHHHHHHHHHHHHHHH
Q 004267 637 LLRPGRLDQLIYIPLPDEDSRHQIFKACLRKS---PVSKDVDLRALAKYTQ------GFSGADITEICQRACKYAIR 704 (764)
Q Consensus 637 llrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~---~~~~~~~l~~la~~~~------g~sg~di~~~~~~a~~~a~~ 704 (764)
+.+ ||...+.+++++.++..++++..+... ....+..+..+++.+. | .++.+..+|+.|...|..
T Consensus 202 ~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G-~p~~~~~l~~~a~~~a~~ 275 (412)
T 1w5s_A 202 VES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDG-SARRAIVALKMACEMAEA 275 (412)
T ss_dssp HHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCC-CHHHHHHHHHHHHHHHHH
T ss_pred hhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHHHHHH
Confidence 555 566669999999999999998776431 1122334677778877 4 677888899888776654
No 159
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.18 E-value=8.2e-11 Score=122.10 Aligned_cols=148 Identities=21% Similarity=0.267 Sum_probs=88.7
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhC---CeEEEEechhhhhhc
Q 004267 206 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG---AFFFCINGPEIMSKL 282 (764)
Q Consensus 206 ~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~---~~~i~v~~~~l~~~~ 282 (764)
+|+++.|.+..+..+.+.+.... ..+.+++|+||||||||++|++++..+. .+++.+++..+....
T Consensus 4 ~f~~~ig~~~~~~~~~~~~~~~~-----------~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~ 72 (265)
T 2bjv_A 4 YKDNLLGEANSFLEVLEQVSHLA-----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL 72 (265)
T ss_dssp ------CCCHHHHHHHHHHHHHT-----------TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHH
T ss_pred ccccceeCCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhH
Confidence 57788899998888877665421 2346899999999999999999999875 578999987653211
Q ss_pred -----cchhHHH-------HHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhccc---------C
Q 004267 283 -----AGESESN-------LRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK---------S 341 (764)
Q Consensus 283 -----~g~~~~~-------l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~---------~ 341 (764)
.|..... ....|.. ...++|||||++.+.+ .....|+..++... .
T Consensus 73 ~~~~l~g~~~~~~~g~~~~~~~~l~~---a~~~~l~lDEi~~l~~-----------~~q~~Ll~~l~~~~~~~~g~~~~~ 138 (265)
T 2bjv_A 73 LDSELFGHEAGAFTGAQKRHPGRFER---ADGGTLFLDELATAPM-----------MVQEKLLRVIEYGELERVGGSQPL 138 (265)
T ss_dssp HHHHHHCCC---------CCCCHHHH---TTTSEEEEESGGGSCH-----------HHHHHHHHHHHHCEECCCCC--CE
T ss_pred HHHHhcCCcccccccccccccchhhh---cCCcEEEEechHhcCH-----------HHHHHHHHHHHhCCeecCCCcccc
Confidence 1110000 0011222 2357999999998743 23345666665321 1
Q ss_pred CCeEEEEEecCCC-------CCCChhhhccCCcceEEEecCCChHHH
Q 004267 342 RAHVIVIGATNRP-------NSIDPALRRFGRFDREIDIGVPDEVGR 381 (764)
Q Consensus 342 ~~~v~vI~atn~~-------~~ld~al~r~~rf~~~i~i~~p~~~~R 381 (764)
...+.+|++||.+ ..+++.|.. ||.. +.+..|...+|
T Consensus 139 ~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~-~~i~lp~L~~R 182 (265)
T 2bjv_A 139 QVNVRLVCATNADLPAMVNEGTFRADLLD--ALAF-DVVQLPPLRER 182 (265)
T ss_dssp ECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCS-EEEECCCGGGC
T ss_pred cCCeEEEEecCcCHHHHHHcCCccHHHHH--hhcC-cEEeCCChhhh
Confidence 2356788888874 246677766 6743 34455555444
No 160
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.14 E-value=5.9e-12 Score=117.96 Aligned_cols=112 Identities=16% Similarity=0.199 Sum_probs=75.0
Q ss_pred ccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccchhcccCcchH
Q 004267 482 DIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEA 561 (764)
Q Consensus 482 ~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~~~~~g~se~ 561 (764)
++.|.+...+.+.+.+... .....+++|+||||||||++|++++..+. +|+.++++++...+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~-----------~~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------ 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAA-----------AKRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------ 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHH-----------HTCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC------
T ss_pred CceeCCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh------
Confidence 3456665555555443321 12345699999999999999999999888 99999998875433
Q ss_pred HHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCC
Q 004267 562 NVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRP 630 (764)
Q Consensus 562 ~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~ 630 (764)
...+|+.+. .+++||||||.+.. .....|+..|+... ..++.+|+|||++
T Consensus 67 -~~~~~~~a~---~~~l~lDei~~l~~--------------~~q~~Ll~~l~~~~-~~~~~iI~~tn~~ 116 (143)
T 3co5_A 67 -PMELLQKAE---GGVLYVGDIAQYSR--------------NIQTGITFIIGKAE-RCRVRVIASCSYA 116 (143)
T ss_dssp -HHHHHHHTT---TSEEEEEECTTCCH--------------HHHHHHHHHHHHHT-TTTCEEEEEEEEC
T ss_pred -hhhHHHhCC---CCeEEEeChHHCCH--------------HHHHHHHHHHHhCC-CCCEEEEEecCCC
Confidence 566777665 35999999999743 22334444444322 3457788888864
No 161
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.13 E-value=7.4e-11 Score=124.72 Aligned_cols=124 Identities=11% Similarity=0.136 Sum_probs=96.3
Q ss_pred cceeeeCCCCCChhHHHHHHHHHh------CCeeEEEecccchhcccCcchHHHHHHHHHHhhCC----CeEEEEecccc
Q 004267 516 KGVLFYGPPGCGKTLLAKAIANEC------QANFISVKGPELLTMWFGESEANVREIFDKARQSA----PCVLFFDELDS 585 (764)
Q Consensus 516 ~gill~GppGtGKT~lak~lA~~~------~~~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~~----p~iifiDEid~ 585 (764)
..+|||||||+|||++|+++|..+ ..+++.+++++- ..+-..+|++.+.+...+ ..|+|+||+|.
T Consensus 19 ~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~-----~~~id~ir~li~~~~~~p~~~~~kvviIdead~ 93 (305)
T 2gno_A 19 ISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE-----NIGIDDIRTIKDFLNYSPELYTRKYVIVHDCER 93 (305)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS-----CBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGG
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC-----CCCHHHHHHHHHHHhhccccCCceEEEeccHHH
Confidence 469999999999999999999864 456777765420 123456888998887544 47999999999
Q ss_pred hhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCCCCCccCCCCCccceEEeecCCCHHHHHHHHHHHh
Q 004267 586 IATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACL 665 (764)
Q Consensus 586 l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~ 665 (764)
+.. ...+.||..|+.. ..++++|.+||.|+.|.|++.+ | ++.|++|+.++..+.++..+
T Consensus 94 lt~--------------~a~naLLk~LEep--~~~t~fIl~t~~~~kl~~tI~S--R---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 94 MTQ--------------QAANAFLKALEEP--PEYAVIVLNTRRWHYLLPTIKS--R---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp BCH--------------HHHHHTHHHHHSC--CTTEEEEEEESCGGGSCHHHHT--T---SEEEECCCCHHHHHHHHHHH
T ss_pred hCH--------------HHHHHHHHHHhCC--CCCeEEEEEECChHhChHHHHc--e---eEeCCCCCHHHHHHHHHHHh
Confidence 732 3467889988853 3456666677778899999998 8 89999999999888888776
No 162
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.13 E-value=1.5e-09 Score=116.81 Aligned_cols=173 Identities=20% Similarity=0.289 Sum_probs=115.1
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCC-----eEEEEec
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA-----FFFCING 275 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~-----~~i~v~~ 275 (764)
+..+-.++++.|.+..++.+...+.. | ...+++|+|||||||||+++++|+.+.. .+..++.
T Consensus 18 k~rp~~~~~~~g~~~~~~~L~~~i~~-----------g--~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~ 84 (340)
T 1sxj_C 18 KYRPETLDEVYGQNEVITTVRKFVDE-----------G--KLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNA 84 (340)
T ss_dssp HTCCSSGGGCCSCHHHHHHHHHHHHT-----------T--CCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECT
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHhc-----------C--CCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcC
Confidence 45566889999999999988877753 1 1124999999999999999999998742 3566665
Q ss_pred hhhhhhccchhHHHHHHHHHHHHh------cCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEE
Q 004267 276 PEIMSKLAGESESNLRKAFEEAEK------NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIG 349 (764)
Q Consensus 276 ~~l~~~~~g~~~~~l~~vf~~a~~------~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~ 349 (764)
++.. + ...++..+..... ..+.+++|||+|.+.. ...+.|+..++.... ...+|.
T Consensus 85 ~~~~----~--~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~-----------~~~~~L~~~le~~~~--~~~~il 145 (340)
T 1sxj_C 85 SDDR----G--IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTN-----------AAQNALRRVIERYTK--NTRFCV 145 (340)
T ss_dssp TSCC----S--HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCH-----------HHHHHHHHHHHHTTT--TEEEEE
T ss_pred cccc----c--HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCH-----------HHHHHHHHHHhcCCC--CeEEEE
Confidence 4421 1 2234444433321 2368999999998742 123556677766543 445666
Q ss_pred ecCCCCCCChhhhccCCcceEEEecCCChHHHHHHHHHHhc--CCCCCCchhhhHHhhhcCC
Q 004267 350 ATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTK--NMKLSDDVDLERIAKDTHG 409 (764)
Q Consensus 350 atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~--~~~l~~~~~l~~la~~t~g 409 (764)
+||.+..+.+.+++ |+. .+.+..++.++..+++...+. ++.+. +..+..++..+.|
T Consensus 146 ~~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~~~~~~i~-~~~~~~i~~~s~G 203 (340)
T 1sxj_C 146 LANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLVHEKLKLS-PNAEKALIELSNG 203 (340)
T ss_dssp EESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHTTTCCBC-HHHHHHHHHHHTT
T ss_pred EecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCC
Confidence 78888899999988 774 688888888888777776653 33332 2234555555544
No 163
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.12 E-value=4.2e-11 Score=112.34 Aligned_cols=90 Identities=16% Similarity=0.255 Sum_probs=66.0
Q ss_pred CcceeeeCCCCCChhHHHHHHHHHh---CCeeEEEecccchhcccCcchHHHHHHHHHHhhCCCeEEEEecccchhhccC
Q 004267 515 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRG 591 (764)
Q Consensus 515 ~~gill~GppGtGKT~lak~lA~~~---~~~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~ 591 (764)
...++|+||||||||++|++++..+ +.+|+ ++++.+... ......|..+.. +++||||||.+..
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~------~~~~~~~~~a~~---g~l~ldei~~l~~--- 90 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA------PQLNDFIALAQG---GTLVLSHPEHLTR--- 90 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS------SCHHHHHHHHTT---SCEEEECGGGSCH---
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc------hhhhcHHHHcCC---cEEEEcChHHCCH---
Confidence 3569999999999999999999986 77899 999876543 345566776644 5999999999743
Q ss_pred CCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCC
Q 004267 592 SSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRP 630 (764)
Q Consensus 592 ~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~ 630 (764)
.....|+..|... ..++.+|+|||++
T Consensus 91 -----------~~q~~Ll~~l~~~--~~~~~~I~~t~~~ 116 (145)
T 3n70_A 91 -----------EQQYHLVQLQSQE--HRPFRLIGIGDTS 116 (145)
T ss_dssp -----------HHHHHHHHHHHSS--SCSSCEEEEESSC
T ss_pred -----------HHHHHHHHHHhhc--CCCEEEEEECCcC
Confidence 2344555555432 3356788888864
No 164
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=99.11 E-value=1.3e-09 Score=142.79 Aligned_cols=407 Identities=15% Similarity=0.215 Sum_probs=196.5
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHH-hCCeEEEEechhhhhhccchhHHHHHHHHHHHH----------------hcCCe
Q 004267 241 PPKGILLYGPPGSGKTLIARAVANE-TGAFFFCINGPEIMSKLAGESESNLRKAFEEAE----------------KNAPS 303 (764)
Q Consensus 241 ~~~~vLL~GppGtGKTtLar~la~~-l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~----------------~~~p~ 303 (764)
.+++|||+||||||||++++..... .+..++.++.+.-.+ ...+...++... .....
T Consensus 1303 ~~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tt------a~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~ 1376 (3245)
T 3vkg_A 1303 EHRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATT------PELLLKTFDHHCEYKRTPSGETVLRPTQLGKWL 1376 (3245)
T ss_dssp TTCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCC------HHHHHHHHHHHEEEEECTTSCEEEEESSTTCEE
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCC------HHHHHHHHhhcceEEeccCCCcccCCCcCCceE
Confidence 4678999999999999877554443 355567777654332 233333333210 12236
Q ss_pred EEEEccccccCCCCCCCchHHHHHHHHHHHHHhhccc-------CCCeEEEEEecCCC-----CCCChhhhccCCcceEE
Q 004267 304 IIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK-------SRAHVIVIGATNRP-----NSIDPALRRFGRFDREI 371 (764)
Q Consensus 304 il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-------~~~~v~vI~atn~~-----~~ld~al~r~~rf~~~i 371 (764)
|+||||++.-.+...... ..-.++.++++.-.-+. .-.++.+|||+|+| ..+++++.| || ..+
T Consensus 1377 VlFiDDiNmp~~D~yGtQ--~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r--~F-~vi 1451 (3245)
T 3vkg_A 1377 VVFCDEINLPSTDKYGTQ--RVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLR--HA-PIL 1451 (3245)
T ss_dssp EEEETTTTCCCCCTTSCC--HHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHT--TC-CEE
T ss_pred EEEecccCCCCccccccc--cHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHh--hc-eEE
Confidence 899999986444332221 11233344443211111 12467899999987 468999988 77 448
Q ss_pred EecCCChHHHHHHHHHHhcCCC-CCCchh--hhHHh------------------hhcCCCchHHHHHHHHHHHHH-----
Q 004267 372 DIGVPDEVGRLEVLRIHTKNMK-LSDDVD--LERIA------------------KDTHGYVGADLAALCTEAALQ----- 425 (764)
Q Consensus 372 ~i~~p~~~~R~~il~~~~~~~~-l~~~~~--l~~la------------------~~t~g~~~~dl~~l~~~a~~~----- 425 (764)
.++.|+.+....|+..+...+. ...+.. ...++ +...-|+.+|+..+++-....
T Consensus 1452 ~i~~ps~esL~~If~til~~~l~~~p~l~~~~~~lv~ati~ly~~v~~~~lp~~k~HY~FnLRDLsrv~qGll~~~~~~~ 1531 (3245)
T 3vkg_A 1452 LVDFPSTSSLTQIYGTFNRALMKLLPNLRSFADNLTDAMVEFYSESQKRFTPDIQAHYIYSPRELSRWDRALLEAIQTMD 1531 (3245)
T ss_dssp ECCCCCHHHHHHHHHHHHHHHTTSCGGGTTSHHHHHHHHHHHHHHHHHHSCTTTSTTCCCCHHHHHHHHHHHHHHHHTSS
T ss_pred EeCCCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCccccHHHHHHHHHHHHHhcCccc
Confidence 9999999998888764432211 111100 00110 112346778887766533221
Q ss_pred --------------HHHhhccc-cccccchhhHHHhhhhcccchhhhccccc--cCCCCcceeeeeccCccccccccchh
Q 004267 426 --------------CIREKMDV-IDLEDETIDAEILNSMAVSNEHFQTALGT--SNPSALRETVVEVPNVSWEDIGGLEN 488 (764)
Q Consensus 426 --------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~al~~--~~ps~~~~~~~~~~~v~~~~i~g~~~ 488 (764)
+.|-..+. ++..+...-...... +...+|...-.. .+|--+.... .-.+..+ ..++
T Consensus 1532 ~~~~~~lvrLW~HE~~RVF~DRLv~~~Dr~~f~~~l~~--~~~~~F~~~~~~~~~~pllf~~f~----~~~Y~~v-~~~~ 1604 (3245)
T 3vkg_A 1532 GCTLEGLVRLWAHEALRLFQDRLVETEEKEWTDKKIDE--VALKHFPSVNLDALKRPILYSNWL----TKDYQPV-NRSD 1604 (3245)
T ss_dssp CCCTTHHHHHHHHHHHHHHTTTCSSHHHHHHHHHHHHH--HHHHHCTTSCGGGGCSSCCCCSSC----C----CC-CHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HHHHhcCcchhhhcccCcchhhhc----cccCccC-CHHH
Confidence 00000000 000000000000000 111111110000 0011000000 0011111 1122
Q ss_pred hhhcccceee---------------ccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccchh
Q 004267 489 VKRELQETVQ---------------YPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 553 (764)
Q Consensus 489 ~k~~l~~~v~---------------~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~~ 553 (764)
+++.+.+.+. ..+.|.-.+.+.-..|..++||+|..||||++|+|..|..++..++.+..+.-++
T Consensus 1605 l~~~l~~~L~~yn~~~~~m~LVlF~daleHv~RI~RIL~qp~GhaLLVGvgGSGkqSLtrLAa~i~~~~vfqi~i~k~Y~ 1684 (3245)
T 3vkg_A 1605 LREYVKARLKVFYEEELDVPLVLFNEVLDHILRIDRVFRQPQGHALLIGVSGGGKSVLSRFVAWMNGLSIYTIKVNNNYK 1684 (3245)
T ss_dssp HHHHHHHHHHTTC------CCCCCHHHHHHHHHHHHHHTSTTCCEEEEESTTSSHHHHHHHHHHHTTCEEECCC----CC
T ss_pred HHHHHHHHHHHHHhcccCceEEeHHHHHHHHHHHHHHHccCCCCeEEecCCCCcHHHHHHHHHHHhCCeeEEEeeeCCCC
Confidence 2222221111 0111222223333456667999999999999999999999999998887543211
Q ss_pred cccCcchHHHHHHHHHHh-hCCCeEEEEecccc-----------hhhccCCCCCCCCcchHHHHHHHHHhh--cCCC-C-
Q 004267 554 MWFGESEANVREIFDKAR-QSAPCVLFFDELDS-----------IATQRGSSVGDAGGAADRVLNQLLTEM--DGMS-A- 617 (764)
Q Consensus 554 ~~~g~se~~i~~~f~~a~-~~~p~iifiDEid~-----------l~~~r~~~~~~~~~~~~~~~~~lL~~l--d~~~-~- 617 (764)
..+-...++.++.+|- +..|.+++|+|-.- ++....-..-=.....+.+++.+-.+. .|+. +
T Consensus 1685 --~~~f~eDLk~l~~~aG~~~~~~vFL~tD~qi~~e~FLE~IN~lL~sGEVP~LF~~dE~~~i~~~~r~~a~~~g~~~dt 1762 (3245)
T 3vkg_A 1685 --SSDFDDDLRMLLKRAGCKEEKICFIFDESNVLESSFLERMNTLLAGGEVPGLFEGEEFTALMHACKETAQRNGLILDS 1762 (3245)
T ss_dssp --HHHHHHHHHHHHHHHHTSCCCEEEEEEGGGCSSTHHHHHHHHHHHHSCCTTSSCTTTHHHHHHHHHHHHHHTTCCCCC
T ss_pred --HHHHHHHHHHHHHHHhcCCCCEEEEEeccccccHHHHHHHHHHhccCCccccCCHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 2234567899999885 46678888887532 222111000000112334444433222 1221 0
Q ss_pred ------------CCcEEEEecCCCC-C------CCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCC
Q 004267 618 ------------KKTVFIIGATNRP-D------IIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPV 670 (764)
Q Consensus 618 ------------~~~v~vi~aTn~~-~------~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~ 670 (764)
.+++-|+.+-+.. + ..-|||.. |+. +-.|..-..++...+-+.+++...+
T Consensus 1763 ~~~l~~~Fi~rvr~NLHvVL~mSPvg~~fR~R~r~fPaLvn--cct-IDWf~~Wp~eAL~~Va~~fl~~~~l 1831 (3245)
T 3vkg_A 1763 EEELYKYFTSQVRRNLHVVFTMNPASPDFHNRSATSPALFN--RCV-LDWFGEWSPEALFQVGSEFTRNLDL 1831 (3245)
T ss_dssp HHHHHHHHHHHHTTTCCEEEEECTTSTTTTC----CTHHHH--HSE-EEEEESCCHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHHHHHHcCEEEEEECCCCHHHHHHHHHChHHhh--Cce-eeecCCCCHHHHHHHHHHHHhhccc
Confidence 1233333333322 1 22366664 544 5567777788888888888877654
No 165
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.08 E-value=1.4e-10 Score=108.69 Aligned_cols=112 Identities=16% Similarity=0.197 Sum_probs=76.6
Q ss_pred cccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCeEEEEechhhhhhccch
Q 004267 209 DVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGE 285 (764)
Q Consensus 209 ~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~~~g~ 285 (764)
++.|.+..++++++.+... ...+.+|+|+||||||||++|++++... +.+|+ +++..+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~-----------a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~---- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQL-----------SETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA---- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHH-----------TTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS----
T ss_pred CceeCCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc----
Confidence 4677788888887776532 1345679999999999999999999886 66788 998776543
Q ss_pred hHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCC
Q 004267 286 SESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRP 354 (764)
Q Consensus 286 ~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~ 354 (764)
......|..+ ..++|||||+|.+.+ .....|+..|.... ..+.+|++||.+
T Consensus 66 --~~~~~~~~~a---~~g~l~ldei~~l~~-----------~~q~~Ll~~l~~~~--~~~~~I~~t~~~ 116 (145)
T 3n70_A 66 --PQLNDFIALA---QGGTLVLSHPEHLTR-----------EQQYHLVQLQSQEH--RPFRLIGIGDTS 116 (145)
T ss_dssp --SCHHHHHHHH---TTSCEEEECGGGSCH-----------HHHHHHHHHHHSSS--CSSCEEEEESSC
T ss_pred --hhhhcHHHHc---CCcEEEEcChHHCCH-----------HHHHHHHHHHhhcC--CCEEEEEECCcC
Confidence 1233445554 346899999998743 23345666664433 355677788864
No 166
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.07 E-value=1e-10 Score=109.46 Aligned_cols=112 Identities=18% Similarity=0.254 Sum_probs=77.2
Q ss_pred cccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhhhhccchhHH
Q 004267 209 DVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESES 288 (764)
Q Consensus 209 ~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~~g~~~~ 288 (764)
++.|.++.++++++.+.... ..+.+|+|+||||||||++|++++...+ +++.+++.++...+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~-----------~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------ 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA-----------KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------ 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH-----------TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC------
T ss_pred CceeCCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh------
Confidence 46788888888888776421 2356799999999999999999999887 88999988765433
Q ss_pred HHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCC
Q 004267 289 NLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRP 354 (764)
Q Consensus 289 ~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~ 354 (764)
....|+.+. .+++||||++.+.+. ....|+..++... ..++.+|++||.+
T Consensus 67 -~~~~~~~a~---~~~l~lDei~~l~~~-----------~q~~Ll~~l~~~~-~~~~~iI~~tn~~ 116 (143)
T 3co5_A 67 -PMELLQKAE---GGVLYVGDIAQYSRN-----------IQTGITFIIGKAE-RCRVRVIASCSYA 116 (143)
T ss_dssp -HHHHHHHTT---TSEEEEEECTTCCHH-----------HHHHHHHHHHHHT-TTTCEEEEEEEEC
T ss_pred -hhhHHHhCC---CCeEEEeChHHCCHH-----------HHHHHHHHHHhCC-CCCEEEEEecCCC
Confidence 344555443 469999999988432 2344555565432 3456677777754
No 167
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.07 E-value=3.9e-10 Score=119.39 Aligned_cols=145 Identities=24% Similarity=0.361 Sum_probs=89.7
Q ss_pred cccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCeEEEEechhhhhhc---
Q 004267 209 DVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKL--- 282 (764)
Q Consensus 209 ~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~~--- 282 (764)
++.|.+..++.+.+.+.... ..+.+|||+||||||||++|++|+... +.+|+.+++..+....
T Consensus 3 ~iig~s~~~~~~~~~~~~~a-----------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~ 71 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVA-----------PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLES 71 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHC-----------STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHH
T ss_pred CcEECCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHH
Confidence 47788888888877765421 345689999999999999999999976 4678999987653211
Q ss_pred --cchh----HH---HHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhccc---------CCCe
Q 004267 283 --AGES----ES---NLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK---------SRAH 344 (764)
Q Consensus 283 --~g~~----~~---~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~---------~~~~ 344 (764)
.|.. .. .....|+.+ ..++|||||++.+.. .....|+..++... ....
T Consensus 72 ~lfg~~~g~~tg~~~~~~g~~~~a---~~g~L~LDEi~~l~~-----------~~q~~Ll~~l~~~~~~~~g~~~~~~~~ 137 (304)
T 1ojl_A 72 ELFGHEKGAFTGADKRREGRFVEA---DGGTLFLDEIGDISP-----------LMQVRLLRAIQEREVQRVGSNQTISVD 137 (304)
T ss_dssp HHTCCCSSCCC---CCCCCHHHHH---TTSEEEEESCTTCCH-----------HHHHHHHHHHHSSBCCBTTBCCCCBCC
T ss_pred HhcCccccccCchhhhhcCHHHhc---CCCEEEEeccccCCH-----------HHHHHHHHHHhcCEeeecCCcccccCC
Confidence 1100 00 111234443 246999999998843 13345666665432 1235
Q ss_pred EEEEEecCCC-------CCCChhhhccCCcceEEEecCCChHHH
Q 004267 345 VIVIGATNRP-------NSIDPALRRFGRFDREIDIGVPDEVGR 381 (764)
Q Consensus 345 v~vI~atn~~-------~~ld~al~r~~rf~~~i~i~~p~~~~R 381 (764)
+.+|++||.. ..+++.|.. ||. .+.+..|...+|
T Consensus 138 ~riI~atn~~l~~~v~~g~fr~~L~~--Rl~-~~~i~lPpL~eR 178 (304)
T 1ojl_A 138 VRLIAATHRDLAEEVSAGRFRQDLYY--RLN-VVAIEMPSLRQR 178 (304)
T ss_dssp CEEEEEESSCHHHHHHHTSSCHHHHH--HHS-SEEEECCCSGGG
T ss_pred eEEEEecCccHHHHHHhCCcHHHHHh--hcC-eeEEeccCHHHh
Confidence 7888889875 234455544 553 344444554443
No 168
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.02 E-value=9.9e-09 Score=110.14 Aligned_cols=165 Identities=15% Similarity=0.192 Sum_probs=110.3
Q ss_pred hHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCe-----------------------
Q 004267 213 VRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------------------- 269 (764)
Q Consensus 213 l~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~----------------------- 269 (764)
+++..+.+...+... ..+..+||+||+|+|||++|+++|+.+...
T Consensus 7 ~~~~~~~l~~~i~~~------------~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~ 74 (334)
T 1a5t_A 7 LRPDFEKLVASYQAG------------RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHP 74 (334)
T ss_dssp GHHHHHHHHHHHHTT------------CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCT
T ss_pred hHHHHHHHHHHHHcC------------CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 455556666555421 234579999999999999999999987532
Q ss_pred -EEEEechhhhhhccchhHHHHHHHHHHHHh----cCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCe
Q 004267 270 -FFCINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAH 344 (764)
Q Consensus 270 -~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~ 344 (764)
++.+++.+- ........++.+++.+.. ....|++|||+|.+.. ...+.|+..++.. ..+
T Consensus 75 d~~~~~~~~~---~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~-----------~a~naLLk~lEep--~~~ 138 (334)
T 1a5t_A 75 DYYTLAPEKG---KNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTD-----------AAANALLKTLEEP--PAE 138 (334)
T ss_dssp TEEEECCCTT---CSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCH-----------HHHHHHHHHHTSC--CTT
T ss_pred CEEEEecccc---CCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCH-----------HHHHHHHHHhcCC--CCC
Confidence 233332100 011123456777766543 3468999999998842 2335677777653 236
Q ss_pred EEEEEecCCCCCCChhhhccCCcceEEEecCCChHHHHHHHHHHhcCCCCCCchhhhHHhhhcCCCch
Q 004267 345 VIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVG 412 (764)
Q Consensus 345 v~vI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~ 412 (764)
+++|.+|+.++.+.+.+++ |+ ..+.++.|+.++..+++.... . .++..+..++..+.|-.+
T Consensus 139 ~~~Il~t~~~~~l~~ti~S--Rc-~~~~~~~~~~~~~~~~L~~~~---~-~~~~~~~~l~~~s~G~~r 199 (334)
T 1a5t_A 139 TWFFLATREPERLLATLRS--RC-RLHYLAPPPEQYAVTWLSREV---T-MSQDALLAALRLSAGSPG 199 (334)
T ss_dssp EEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHC---C-CCHHHHHHHHHHTTTCHH
T ss_pred eEEEEEeCChHhCcHHHhh--cc-eeeeCCCCCHHHHHHHHHHhc---C-CCHHHHHHHHHHcCCCHH
Confidence 7777788889999999998 76 468999999999888887664 2 233445667777766543
No 169
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.97 E-value=1.7e-09 Score=105.16 Aligned_cols=77 Identities=19% Similarity=0.330 Sum_probs=50.8
Q ss_pred hhhCCCCCceEEEECCCCCCHHHHHHHHHHHh----CCeEEEEechhhhhhccchhHHH-HHHHHHHHHhcCCeEEEEcc
Q 004267 235 KSIGVKPPKGILLYGPPGSGKTLIARAVANET----GAFFFCINGPEIMSKLAGESESN-LRKAFEEAEKNAPSIIFIDE 309 (764)
Q Consensus 235 ~~l~i~~~~~vLL~GppGtGKTtLar~la~~l----~~~~i~v~~~~l~~~~~g~~~~~-l~~vf~~a~~~~p~il~iDE 309 (764)
+++.+..+.+++|+||||||||||++++++.+ +..++.++..++........... ....++.. ..|.+|+|||
T Consensus 31 ~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~llilDE 108 (180)
T 3ec2_A 31 HNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLMDEGKDTKFLKTV--LNSPVLVLDD 108 (180)
T ss_dssp HSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHHHHHHTCCSHHHHHH--HTCSEEEEET
T ss_pred HhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHhcCchHHHHHHHh--cCCCEEEEeC
Confidence 34455668899999999999999999999987 55666777776654332111100 01122222 3578999999
Q ss_pred cccc
Q 004267 310 IDSI 313 (764)
Q Consensus 310 id~l 313 (764)
++..
T Consensus 109 ~~~~ 112 (180)
T 3ec2_A 109 LGSE 112 (180)
T ss_dssp CSSS
T ss_pred CCCC
Confidence 8743
No 170
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.92 E-value=3.8e-09 Score=121.45 Aligned_cols=28 Identities=25% Similarity=0.390 Sum_probs=25.5
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHh
Q 004267 239 VKPPKGILLYGPPGSGKTLIARAVANET 266 (764)
Q Consensus 239 i~~~~~vLL~GppGtGKTtLar~la~~l 266 (764)
+.+++.+.|.||+|+|||||++.|++.+
T Consensus 100 ~~~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 100 PRPGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 4678899999999999999999999865
No 171
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.91 E-value=5.3e-08 Score=110.99 Aligned_cols=116 Identities=18% Similarity=0.192 Sum_probs=68.7
Q ss_pred hh-CCCCCceEEEECCCCCCHHHHHHH--HHHHh--CCeEEEEechhhhh------hccc--------------------
Q 004267 236 SI-GVKPPKGILLYGPPGSGKTLIARA--VANET--GAFFFCINGPEIMS------KLAG-------------------- 284 (764)
Q Consensus 236 ~l-~i~~~~~vLL~GppGtGKTtLar~--la~~l--~~~~i~v~~~~l~~------~~~g-------------------- 284 (764)
++ ++.+++.++|.||||||||||++. +++.. +...+.+++.+... ...|
T Consensus 32 ~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~l~~~~~~~~ 111 (525)
T 1tf7_A 32 SHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPD 111 (525)
T ss_dssp TTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSEEEEECCCC
T ss_pred cCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCcEEEEecCcc
Confidence 34 567899999999999999999999 56665 33345565533100 0000
Q ss_pred ----------hhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCC
Q 004267 285 ----------ESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRP 354 (764)
Q Consensus 285 ----------~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~ 354 (764)
.....+...........|.+++|||+-.+.+.. ..+.....++..++..+... ++.+|.++++.
T Consensus 112 ~~~~~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~~-----~lD~~~~~~l~~ll~~l~~~-g~tvl~itH~~ 185 (525)
T 1tf7_A 112 PEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQY-----DASSVVRRELFRLVARLKQI-GATTVMTTERI 185 (525)
T ss_dssp SSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTT-----CCHHHHHHHHHHHHHHHHHH-TCEEEEEEECS
T ss_pred cchhhhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHhc-----CCHHHHHHHHHHHHHHHHHC-CCEEEEEecCC
Confidence 011223334444445678899999987765542 12233344555555555432 45666678877
Q ss_pred CCC
Q 004267 355 NSI 357 (764)
Q Consensus 355 ~~l 357 (764)
+.+
T Consensus 186 ~~~ 188 (525)
T 1tf7_A 186 EEY 188 (525)
T ss_dssp SSS
T ss_pred CCc
Confidence 665
No 172
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.90 E-value=8.3e-10 Score=115.47 Aligned_cols=122 Identities=23% Similarity=0.306 Sum_probs=81.2
Q ss_pred cCCCCcceeeeCCCCCChhHHHHHHHHHhCC--eeEEEecccchhcccCcchHHHHHHHHHHhhCCCeEEEEecccchhh
Q 004267 511 GMSPSKGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIAT 588 (764)
Q Consensus 511 ~~~~~~gill~GppGtGKT~lak~lA~~~~~--~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~ 588 (764)
|+.+...++|+||||||||+||.++|...+. .|+.....+.++.|....+..+..+++...... ++||||++.+..
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~ 196 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIG 196 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC-
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEeccccccc
Confidence 5555556899999999999999999987543 466664455555555555666777777776655 999999999865
Q ss_pred ccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCCCCCccC
Q 004267 589 QRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPAL 637 (764)
Q Consensus 589 ~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~al 637 (764)
..... ...+...+.+.++|..|.++....++.+|++|| +...|+++
T Consensus 197 ~~~~~--s~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 197 AAGGN--TTSGGISRGAFDLLSDIGAMAASRGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp ------------CCHHHHHHHHHHHHHHHHHTCEEEEECC-CSSCSSSH
T ss_pred ccccc--cccchHHHHHHHHHHHHHHHHhhCCCEEEEEeC-CcccchhH
Confidence 43221 011122456677777777665555678888998 66677765
No 173
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=98.90 E-value=9.8e-10 Score=126.73 Aligned_cols=163 Identities=20% Similarity=0.222 Sum_probs=96.1
Q ss_pred ccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEE----echhhhhhc-
Q 004267 208 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCI----NGPEIMSKL- 282 (764)
Q Consensus 208 ~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v----~~~~l~~~~- 282 (764)
..|.|.+..++.+..++.. .++.......+....+|||+||||||||+||+++|+.++..++.. ++..+....
T Consensus 295 ~~I~G~e~vk~al~~~l~~--g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~ 372 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFG--GVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVV 372 (595)
T ss_dssp STTSCCHHHHHHHTTTTTC--CCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECS
T ss_pred chhcChHHHHHHHHHHHhC--CCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceee
Confidence 3588888876655322211 000000011223344899999999999999999999987655432 112221111
Q ss_pred ----cchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhccc-----------CCCeEEE
Q 004267 283 ----AGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK-----------SRAHVIV 347 (764)
Q Consensus 283 ----~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-----------~~~~v~v 347 (764)
.|.....-+ .+..| ..+++||||+|.+.+. ....|+..|+.-. ...++.|
T Consensus 373 ~~~~~g~~~~~~G-~l~~A---~~gil~IDEid~l~~~-----------~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~v 437 (595)
T 3f9v_A 373 REKGTGEYYLEAG-ALVLA---DGGIAVIDEIDKMRDE-----------DRVAIHEAMEQQTVSIAKAGIVAKLNARAAV 437 (595)
T ss_dssp SGGGTSSCSEEEC-HHHHH---SSSEECCTTTTCCCSH-----------HHHHHHHHHHSSSEEEESSSSEEEECCCCEE
T ss_pred eccccccccccCC-eeEec---CCCcEEeehhhhCCHh-----------HhhhhHHHHhCCEEEEecCCcEEEecCceEE
Confidence 111000001 11222 3469999999987432 3356777776321 1246789
Q ss_pred EEecCCCC-------------CCChhhhccCCcc-eEEEecCCChHHHHHHHHHHhc
Q 004267 348 IGATNRPN-------------SIDPALRRFGRFD-REIDIGVPDEVGRLEVLRIHTK 390 (764)
Q Consensus 348 I~atn~~~-------------~ld~al~r~~rf~-~~i~i~~p~~~~R~~il~~~~~ 390 (764)
|+|||++. .+++++.+ ||+ ..+..+.|+.+ ...|.+....
T Consensus 438 IaatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~ 491 (595)
T 3f9v_A 438 IAAGNPKFGRYISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DRELANYILD 491 (595)
T ss_dssp EEEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHT
T ss_pred EEEcCCcCCccCcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHH
Confidence 99999886 78899988 997 45566777777 7777665543
No 174
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.89 E-value=1.2e-08 Score=107.58 Aligned_cols=142 Identities=11% Similarity=0.170 Sum_probs=99.5
Q ss_pred ChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHh------CCeEEEEechhhhhhccch
Q 004267 212 GVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET------GAFFFCINGPEIMSKLAGE 285 (764)
Q Consensus 212 Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l------~~~~i~v~~~~l~~~~~g~ 285 (764)
|.++.++.++..+... ....+||+||||+|||++++++|..+ ...++.+++.. . ..
T Consensus 1 g~~~~~~~L~~~i~~~-------------~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~---~--~~ 62 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS-------------EGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG---E--NI 62 (305)
T ss_dssp ---CHHHHHHHHHHTC-------------SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS---S--CB
T ss_pred ChHHHHHHHHHHHHCC-------------CCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc---C--CC
Confidence 4566677777776541 14579999999999999999999864 33566676532 0 12
Q ss_pred hHHHHHHHHHHHHhc----CCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCChhh
Q 004267 286 SESNLRKAFEEAEKN----APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPAL 361 (764)
Q Consensus 286 ~~~~l~~vf~~a~~~----~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld~al 361 (764)
.-..++.+++.+... ...|+||||+|.+.. ...+.|+..|+... ..+++|.+|+.+..+.+.+
T Consensus 63 ~id~ir~li~~~~~~p~~~~~kvviIdead~lt~-----------~a~naLLk~LEep~--~~t~fIl~t~~~~kl~~tI 129 (305)
T 2gno_A 63 GIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQ-----------QAANAFLKALEEPP--EYAVIVLNTRRWHYLLPTI 129 (305)
T ss_dssp CHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCH-----------HHHHHTHHHHHSCC--TTEEEEEEESCGGGSCHHH
T ss_pred CHHHHHHHHHHHhhccccCCceEEEeccHHHhCH-----------HHHHHHHHHHhCCC--CCeEEEEEECChHhChHHH
Confidence 234577887777542 246999999998842 22456777777543 3566666778888999999
Q ss_pred hccCCcceEEEecCCChHHHHHHHHHHh
Q 004267 362 RRFGRFDREIDIGVPDEVGRLEVLRIHT 389 (764)
Q Consensus 362 ~r~~rf~~~i~i~~p~~~~R~~il~~~~ 389 (764)
++ | .+.++.|+.++-.+.++..+
T Consensus 130 ~S--R---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 130 KS--R---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp HT--T---SEEEECCCCHHHHHHHHHHH
T ss_pred Hc--e---eEeCCCCCHHHHHHHHHHHh
Confidence 98 6 67888999888888887655
No 175
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.88 E-value=4.1e-08 Score=108.19 Aligned_cols=205 Identities=13% Similarity=0.125 Sum_probs=122.3
Q ss_pred cccccChHHHHHHHHHHH-HccccChhhhhhhCCCCCceEEE--ECCCCCCHHHHHHHHHHHh---------CCeEEEEe
Q 004267 207 YDDVGGVRKQMAQIRELV-ELPLRHPQLFKSIGVKPPKGILL--YGPPGSGKTLIARAVANET---------GAFFFCIN 274 (764)
Q Consensus 207 ~~~i~Gl~~~~~~l~e~i-~~~l~~~~~~~~l~i~~~~~vLL--~GppGtGKTtLar~la~~l---------~~~~i~v~ 274 (764)
.+++.|-+++++++.+.+ ......+ -..+..++| +||+|+|||+|++.+++.+ +..++.++
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~-------~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGA-------GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN 93 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSS-------CBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCC-------CCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE
Confidence 367899999999998887 4311110 023567999 9999999999999999876 44567777
Q ss_pred chhh------hhhc----------cchhHHH-HHHHHHHHH-hcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHh
Q 004267 275 GPEI------MSKL----------AGESESN-LRKAFEEAE-KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLM 336 (764)
Q Consensus 275 ~~~l------~~~~----------~g~~~~~-l~~vf~~a~-~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~l 336 (764)
+... .... .+..... +..+.+... ...|.+|+|||++.+....... ......++..+
T Consensus 94 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~-----~~~l~~l~~~~ 168 (412)
T 1w5s_A 94 AFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIA-----AEDLYTLLRVH 168 (412)
T ss_dssp GGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSC-----HHHHHHHHTHH
T ss_pred CCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcc-----hHHHHHHHHHH
Confidence 6321 1110 0111111 222222222 2458899999999886432111 12334445555
Q ss_pred hcccC-C--CeEEEEEecCCCC---CCC---hhhhccCCcceEEEecCCChHHHHHHHHHHhcCC---CCCCchhhhHHh
Q 004267 337 DGLKS-R--AHVIVIGATNRPN---SID---PALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNM---KLSDDVDLERIA 404 (764)
Q Consensus 337 d~~~~-~--~~v~vI~atn~~~---~ld---~al~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~---~l~~~~~l~~la 404 (764)
..... . .++.+|++++.++ .++ +.+.+ ++...+.++.++.++..+++...+... ...++..+..++
T Consensus 169 ~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~ 246 (412)
T 1w5s_A 169 EEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELIS 246 (412)
T ss_dssp HHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHH
T ss_pred HhcccCCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHH
Confidence 44321 2 5788888887654 223 44444 455559999999999999987654321 122334567777
Q ss_pred hhcC------CCchHHHHHHHHHHHHHH
Q 004267 405 KDTH------GYVGADLAALCTEAALQC 426 (764)
Q Consensus 405 ~~t~------g~~~~dl~~l~~~a~~~~ 426 (764)
..+. |.. ..+..++..+...+
T Consensus 247 ~~~~~~~~~~G~p-~~~~~l~~~a~~~a 273 (412)
T 1w5s_A 247 DVYGEDKGGDGSA-RRAIVALKMACEMA 273 (412)
T ss_dssp HHHCGGGTSCCCH-HHHHHHHHHHHHHH
T ss_pred HHHHHhccCCCcH-HHHHHHHHHHHHHH
Confidence 7777 653 34555666555433
No 176
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=98.82 E-value=2.8e-09 Score=89.81 Aligned_cols=77 Identities=32% Similarity=0.622 Sum_probs=67.7
Q ss_pred ecCCChHHHHHHHHHHhcCCCCCCchhhhHHhhhcCCCchHHHHHHHHHHHHHHHHhhccccccccchhhHHHhhhhccc
Q 004267 373 IGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVS 452 (764)
Q Consensus 373 i~~p~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (764)
-.+|+.++|.+||+.+++++++..++++..+|+.|.||+|+||.++|++|++.++++. ...++
T Consensus 8 ~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~-----------------~~~I~ 70 (86)
T 2krk_A 8 HSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER-----------------RVHVT 70 (86)
T ss_dssp CCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTT-----------------CSEEC
T ss_pred CCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHc-----------------CCCCC
Confidence 4689999999999999999999889999999999999999999999999999998764 23478
Q ss_pred chhhhccccccCCC
Q 004267 453 NEHFQTALGTSNPS 466 (764)
Q Consensus 453 ~~~~~~al~~~~ps 466 (764)
.+||..++..+.|.
T Consensus 71 ~~df~~Al~~v~p~ 84 (86)
T 2krk_A 71 QEDFEMAVAKVMQK 84 (86)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHccC
Confidence 88888888776553
No 177
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.82 E-value=8.4e-09 Score=117.24 Aligned_cols=54 Identities=11% Similarity=0.068 Sum_probs=36.3
Q ss_pred HHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCC
Q 004267 291 RKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNS 356 (764)
Q Consensus 291 ~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ 356 (764)
+-.+..|....|.+|++|| +.+.++.....++..++..+.. +..||.+||+.+.
T Consensus 146 rv~iA~aL~~~p~illlDE----------Pts~LD~~~~~~l~~~l~~l~~--g~tii~vsHdl~~ 199 (538)
T 3ozx_A 146 RLLVAASLLREADVYIFDQ----------PSSYLDVRERMNMAKAIRELLK--NKYVIVVDHDLIV 199 (538)
T ss_dssp HHHHHHHHHSCCSEEEEES----------TTTTCCHHHHHHHHHHHHHHCT--TSEEEEECSCHHH
T ss_pred HHHHHHHHHcCCCEEEEEC----------CcccCCHHHHHHHHHHHHHHhC--CCEEEEEEeChHH
Confidence 4456677788999999999 4444455555667777776654 3456667887543
No 178
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.80 E-value=3.7e-09 Score=99.43 Aligned_cols=97 Identities=14% Similarity=0.337 Sum_probs=63.8
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHh---CCeEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEEccccccCCCC
Q 004267 241 PPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKR 317 (764)
Q Consensus 241 ~~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~ 317 (764)
+++.++|+||+|+|||||++++++.+ +...+.+++.++... +....|.+|+|||++.+....
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~~~~ 99 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLGNEE 99 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCCSHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccChHH
Confidence 57789999999999999999999987 666778887766543 112357899999998754221
Q ss_pred CCCchHHHHHHHHHHHHHhhcccCCCe-EEEEEecCCCCCCC--hhhhc
Q 004267 318 EKTHGEVERRIVSQLLTLMDGLKSRAH-VIVIGATNRPNSID--PALRR 363 (764)
Q Consensus 318 ~~~~~~~~~~v~~~Ll~~ld~~~~~~~-v~vI~atn~~~~ld--~al~r 363 (764)
...|..+++.....+. ++++.+...|..+. +.+++
T Consensus 100 -----------~~~l~~li~~~~~~g~~~iiits~~~p~~l~~~~~L~S 137 (149)
T 2kjq_A 100 -----------QALLFSIFNRFRNSGKGFLLLGSEYTPQQLVIREDLRT 137 (149)
T ss_dssp -----------HHHHHHHHHHHHHHTCCEEEEEESSCTTTSSCCHHHHH
T ss_pred -----------HHHHHHHHHHHHHcCCcEEEEECCCCHHHccccHHHHH
Confidence 2345555554433333 35554443555443 56655
No 179
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.78 E-value=2e-09 Score=116.64 Aligned_cols=119 Identities=20% Similarity=0.267 Sum_probs=80.4
Q ss_pred cCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccchhcccCcchHHHHHHHHHHhhCCCeEEEEecccchhh-c
Q 004267 511 GMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIAT-Q 589 (764)
Q Consensus 511 ~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~-~ 589 (764)
+++++..++|+||||||||||++++++..+..++.+..++-. ....+..+| ...++|+||++.+.. .
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~~------~~~~lg~~~------q~~~~l~dd~~~~~~~~ 232 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDR------LNFELGVAI------DQFLVVFEDVKGTGGES 232 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTTT------HHHHHGGGT------TCSCEEETTCCCSTTTT
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccchh------HHHHHHHhc------chhHHHHHHHHHHHHHH
Confidence 566667799999999999999999999887766654443210 011233333 235789999999875 3
Q ss_pred cCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCCCCCccCCCCCccceEEeecC
Q 004267 590 RGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPL 651 (764)
Q Consensus 590 r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~ 651 (764)
|+...+ .... ....+...+||. +.|+++||+++.+ +++++|||++..++..+
T Consensus 233 r~l~~~---~~~~-~~~~l~~~ldG~-----v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 233 RDLPSG---QGIN-NLDNLRDYLDGS-----VKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp TTCCCC---SHHH-HHHTTHHHHHCS-----SCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred hhcccc---Ccch-HHHHHHHHhcCC-----CeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 332111 1111 224455556653 4578889999999 89999999998888765
No 180
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.77 E-value=3.6e-09 Score=102.79 Aligned_cols=106 Identities=21% Similarity=0.162 Sum_probs=63.8
Q ss_pred cCCCCcceeeeCCCCCChhHHHHHHHHHh----CCeeEEEecccchhcccCcchH-HHHHHHHHHhhCCCeEEEEecccc
Q 004267 511 GMSPSKGVLFYGPPGCGKTLLAKAIANEC----QANFISVKGPELLTMWFGESEA-NVREIFDKARQSAPCVLFFDELDS 585 (764)
Q Consensus 511 ~~~~~~gill~GppGtGKT~lak~lA~~~----~~~~i~v~~~~l~~~~~g~se~-~i~~~f~~a~~~~p~iifiDEid~ 585 (764)
....+.+++|+||||||||||++++++.+ +...+.++..++...+...... ....+++.. ..|.++++||++.
T Consensus 34 ~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~llilDE~~~ 111 (180)
T 3ec2_A 34 NPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLMDEGKDTKFLKTV--LNSPVLVLDDLGS 111 (180)
T ss_dssp CGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHHHHHHTCCSHHHHHH--HTCSEEEEETCSS
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHhcCchHHHHHHHh--cCCCEEEEeCCCC
Confidence 33446779999999999999999999976 5566677777765433211000 001222222 2467999999985
Q ss_pred hhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCC
Q 004267 586 IATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPD 631 (764)
Q Consensus 586 l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~ 631 (764)
... +......+..++.... . .+..+|.|||.+.
T Consensus 112 ~~~---------~~~~~~~l~~ll~~~~---~-~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 112 ERL---------SDWQRELISYIITYRY---N-NLKSTIITTNYSL 144 (180)
T ss_dssp SCC---------CHHHHHHHHHHHHHHH---H-TTCEEEEECCCCS
T ss_pred CcC---------CHHHHHHHHHHHHHHH---H-cCCCEEEEcCCCh
Confidence 311 2344555666655542 1 2345677787653
No 181
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.77 E-value=2.2e-08 Score=116.22 Aligned_cols=53 Identities=26% Similarity=0.426 Sum_probs=44.3
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCC
Q 004267 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA 268 (764)
Q Consensus 201 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~ 268 (764)
.+++-.++++.|.+..++.+...+.. +..++|+||||||||||+++|++.++.
T Consensus 34 ~~rp~~l~~i~G~~~~l~~l~~~i~~---------------g~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 34 EVPEKLIDQVIGQEHAVEVIKTAANQ---------------KRHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp CCCSSHHHHCCSCHHHHHHHHHHHHT---------------TCCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred cccccccceEECchhhHhhccccccC---------------CCEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 45666789999999998888766643 468999999999999999999998753
No 182
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.74 E-value=7.4e-08 Score=126.59 Aligned_cols=128 Identities=19% Similarity=0.279 Sum_probs=89.4
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCc
Q 004267 242 PKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTH 321 (764)
Q Consensus 242 ~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~ 321 (764)
..+..+.||+|||||.+++.+|+.+|..++.++|.+-+. ...++.+|.-+... .+..++||++.+-+
T Consensus 604 ~~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d------~~~~g~i~~G~~~~-GaW~cfDEfNrl~~------ 670 (3245)
T 3vkg_A 604 RMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFD------LQAMSRIFVGLCQC-GAWGCFDEFNRLEE------ 670 (3245)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCC------HHHHHHHHHHHHHH-TCEEEEETTTSSCH------
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCC------HHHHHHHHhhHhhc-CcEEEehhhhcCCH------
Confidence 446789999999999999999999999999999976432 34567777776654 46889999987632
Q ss_pred hHHHHHHHHHHHHHhh-------------c--ccCCCeEEEEEecCC----CCCCChhhhccCCcceEEEecCCChHHHH
Q 004267 322 GEVERRIVSQLLTLMD-------------G--LKSRAHVIVIGATNR----PNSIDPALRRFGRFDREIDIGVPDEVGRL 382 (764)
Q Consensus 322 ~~~~~~v~~~Ll~~ld-------------~--~~~~~~v~vI~atn~----~~~ld~al~r~~rf~~~i~i~~p~~~~R~ 382 (764)
++-..+..++..+.. + +.-+..+.++.|.|+ ...+++.|+. || +.+.+..||.+.-.
T Consensus 671 -~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lF-r~v~m~~Pd~~~i~ 746 (3245)
T 3vkg_A 671 -RILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LF-RSMAMIKPDREMIA 746 (3245)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TE-EEEECCSCCHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hc-EEEEEeCCCHHHHH
Confidence 222222222322111 1 222345667778773 3578999997 66 77999999998877
Q ss_pred HHHH
Q 004267 383 EVLR 386 (764)
Q Consensus 383 ~il~ 386 (764)
+|+-
T Consensus 747 ei~L 750 (3245)
T 3vkg_A 747 QVML 750 (3245)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7753
No 183
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=98.73 E-value=9.7e-09 Score=85.10 Aligned_cols=73 Identities=34% Similarity=0.661 Sum_probs=64.3
Q ss_pred cCCChHHHHHHHHHHhcCCCCCCchhhhHHhhhcCCCchHHHHHHHHHHHHHHHHhhccccccccchhhHHHhhhhcccc
Q 004267 374 GVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVSN 453 (764)
Q Consensus 374 ~~p~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (764)
|.|+.++|.+||+.+++++++..++++..++..|+||+|+||.++|++|++.++++.. ..++.
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~-----------------~~i~~ 63 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERR-----------------VHVTQ 63 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTC-----------------SEECH
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCC-----------------CCCCH
Confidence 6899999999999999999998899999999999999999999999999999987642 34677
Q ss_pred hhhhcccccc
Q 004267 454 EHFQTALGTS 463 (764)
Q Consensus 454 ~~~~~al~~~ 463 (764)
+||..++..+
T Consensus 64 ~d~~~Al~~v 73 (78)
T 3kw6_A 64 EDFEMAVAKV 73 (78)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7888777654
No 184
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.70 E-value=7e-09 Score=108.48 Aligned_cols=120 Identities=18% Similarity=0.240 Sum_probs=72.0
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHhCCe--EEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEEccccccCC
Q 004267 238 GVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAP 315 (764)
Q Consensus 238 ~i~~~~~vLL~GppGtGKTtLar~la~~l~~~--~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~ 315 (764)
|+.++..++|+||||||||+|+..++...+.. |+.....+..+.+..+.+..+..+++...... ++|||+++.+..
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~ 196 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIG 196 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC-
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEeccccccc
Confidence 55667789999999999999999999865433 55552233333333455666666666666554 999999999865
Q ss_pred CCCCC--chHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCChhh
Q 004267 316 KREKT--HGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPAL 361 (764)
Q Consensus 316 ~~~~~--~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld~al 361 (764)
..... .+.. .+...+++..|..+....++.+|.++| +...++++
T Consensus 197 ~~~~~s~~G~v-~~~lrqlL~~L~~~~k~~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 197 AAGGNTTSGGI-SRGAFDLLSDIGAMAASRGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp ----------C-CHHHHHHHHHHHHHHHHHTCEEEEECC-CSSCSSSH
T ss_pred ccccccccchH-HHHHHHHHHHHHHHHhhCCCEEEEEeC-CcccchhH
Confidence 44321 1111 123344555554444444567777777 45555544
No 185
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.70 E-value=7.7e-09 Score=97.25 Aligned_cols=58 Identities=16% Similarity=0.243 Sum_probs=45.6
Q ss_pred CcceeeeCCCCCChhHHHHHHHHHh---CCeeEEEecccchhcccCcchHHHHHHHHHHhhCCCeEEEEecccchh
Q 004267 515 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIA 587 (764)
Q Consensus 515 ~~gill~GppGtGKT~lak~lA~~~---~~~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~ 587 (764)
...++|+||||+|||+|++++++.. +...+.+++.++... +....|.++++||++.+.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~ 96 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLG 96 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccC
Confidence 4569999999999999999999976 566888888876543 112346899999998853
No 186
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=98.66 E-value=2.1e-08 Score=85.06 Aligned_cols=74 Identities=28% Similarity=0.466 Sum_probs=64.4
Q ss_pred ChHHHHHHHHHHhcCCCCCCchhhhHHhhhcCCCchHHHHHHHHHHHHHHHHhhccccccccchhhHHHhhhhcccchhh
Q 004267 377 DEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVSNEHF 456 (764)
Q Consensus 377 ~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (764)
|.++|.+||+.|++++++..++++..+|..|+||+|+||.++|++|++.++++.. ..++.+||
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~-----------------~~i~~~df 64 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARR-----------------KVATEKDF 64 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSC-----------------SSBCHHHH
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhcc-----------------ccCCHHHH
Confidence 5678999999999999999999999999999999999999999999999998742 23788899
Q ss_pred hccccccCCCC
Q 004267 457 QTALGTSNPSA 467 (764)
Q Consensus 457 ~~al~~~~ps~ 467 (764)
..|+..+.++.
T Consensus 65 ~~Al~~v~~~~ 75 (88)
T 3vlf_B 65 LKAVDKVISGY 75 (88)
T ss_dssp HHHHHHHTC--
T ss_pred HHHHHHHhcCc
Confidence 99988876654
No 187
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.63 E-value=5.3e-08 Score=110.87 Aligned_cols=29 Identities=28% Similarity=0.398 Sum_probs=26.2
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 004267 238 GVKPPKGILLYGPPGSGKTLIARAVANET 266 (764)
Q Consensus 238 ~i~~~~~vLL~GppGtGKTtLar~la~~l 266 (764)
.+.+++.+.|+||+|||||||+++|++.+
T Consensus 43 ~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 43 VVKEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 36788999999999999999999999865
No 188
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.62 E-value=1.7e-08 Score=120.67 Aligned_cols=29 Identities=34% Similarity=0.619 Sum_probs=25.9
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHH
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVAN 264 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~ 264 (764)
++.+.+++.+.|+||+|+|||||+++|++
T Consensus 455 sl~I~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 455 QLRLKRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 44567889999999999999999999985
No 189
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.60 E-value=6.1e-08 Score=111.63 Aligned_cols=29 Identities=31% Similarity=0.393 Sum_probs=26.0
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 004267 238 GVKPPKGILLYGPPGSGKTLIARAVANET 266 (764)
Q Consensus 238 ~i~~~~~vLL~GppGtGKTtLar~la~~l 266 (764)
.+.+++.+.|.||+|+|||||+++|++.+
T Consensus 113 ~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 113 IVKDGMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 35788899999999999999999999865
No 190
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=98.58 E-value=3.6e-08 Score=82.71 Aligned_cols=74 Identities=27% Similarity=0.424 Sum_probs=64.6
Q ss_pred ChHHHHHHHHHHhcCCCCCCchhhhHHhhhcCCCchHHHHHHHHHHHHHHHHhhccccccccchhhHHHhhhhcccchhh
Q 004267 377 DEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVSNEHF 456 (764)
Q Consensus 377 ~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (764)
+.++|.+||+.+++++++..++++..++..|+||+|+||.++|++|++.++++. ...++.+||
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~-----------------~~~i~~~df 64 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVREN-----------------RYIVLAKDF 64 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSC-----------------CSSBCHHHH
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc-----------------cCCcCHHHH
Confidence 678999999999999999889999999999999999999999999999888654 134788899
Q ss_pred hccccccCCCC
Q 004267 457 QTALGTSNPSA 467 (764)
Q Consensus 457 ~~al~~~~ps~ 467 (764)
..++..+.|+.
T Consensus 65 ~~Al~~~~ps~ 75 (83)
T 3aji_B 65 EKAYKTVIKKD 75 (83)
T ss_dssp HHHHHHHCC--
T ss_pred HHHHHHHccCc
Confidence 99998888764
No 191
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.56 E-value=1.3e-06 Score=93.74 Aligned_cols=166 Identities=14% Similarity=0.156 Sum_probs=99.4
Q ss_pred cceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccch--------------------------------hcccC------
Q 004267 516 KGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL--------------------------------TMWFG------ 557 (764)
Q Consensus 516 ~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~--------------------------------~~~~g------ 557 (764)
..++++||+|+|||+|++.++...+..++.+++...- ....|
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ 110 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGN 110 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSS
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecce
Confidence 3699999999999999999999887777777765320 00000
Q ss_pred -c-------chHHHHHHHHHHhhC--CCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecC
Q 004267 558 -E-------SEANVREIFDKARQS--APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGAT 627 (764)
Q Consensus 558 -~-------se~~i~~~f~~a~~~--~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aT 627 (764)
. ....+..+++..... .|.+|||||++.+.... +......+..+.... .++.+|+|+
T Consensus 111 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~-------~~~~~~~l~~~~~~~------~~~~~i~~g 177 (357)
T 2fna_A 111 EIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLR-------GVNLLPALAYAYDNL------KRIKFIMSG 177 (357)
T ss_dssp SEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCT-------TCCCHHHHHHHHHHC------TTEEEEEEE
T ss_pred EEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccC-------chhHHHHHHHHHHcC------CCeEEEEEc
Confidence 0 012344555544432 38999999999986420 011233444444332 245555555
Q ss_pred CCCCCC-------CccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHH
Q 004267 628 NRPDII-------DPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQ 696 (764)
Q Consensus 628 n~~~~l-------d~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~sg~di~~~~~ 696 (764)
+....+ +..-.-.||+...+.+++.+.++..++++..+...+...+ +...+...+.|+- .-+..++.
T Consensus 178 ~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~-~~~~i~~~t~G~P-~~l~~~~~ 251 (357)
T 2fna_A 178 SEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFK-DYEVVYEKIGGIP-GWLTYFGF 251 (357)
T ss_dssp SSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCC-CHHHHHHHHCSCH-HHHHHHHH
T ss_pred CchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCC-cHHHHHHHhCCCH-HHHHHHHH
Confidence 432211 1111112577789999999999999999887754333332 2377888888754 34555544
No 192
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.53 E-value=4.6e-08 Score=96.75 Aligned_cols=69 Identities=33% Similarity=0.423 Sum_probs=48.0
Q ss_pred cceeeeCCCCCChhHHHHHHHHHh---CCeeEEEecccchhcccCcc-hHHHHHHHHHHhhCCCeEEEEecccch
Q 004267 516 KGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGES-EANVREIFDKARQSAPCVLFFDELDSI 586 (764)
Q Consensus 516 ~gill~GppGtGKT~lak~lA~~~---~~~~i~v~~~~l~~~~~g~s-e~~i~~~f~~a~~~~p~iifiDEid~l 586 (764)
.+++|+||||||||+||++++..+ +.+++.++++++...+.... ...+..++...... .+|||||++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~lilDei~~~ 127 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTMNEKLDYIKKV--PVLMLDDLGAE 127 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC---CCCHHHHHHHHHS--SEEEEEEECCC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHHHhccchHHHHHHHhcCC--CEEEEcCCCCC
Confidence 679999999999999999999976 56788888877654332110 11123334444333 59999999764
No 193
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.51 E-value=1e-07 Score=93.88 Aligned_cols=125 Identities=14% Similarity=0.172 Sum_probs=77.0
Q ss_pred ceeeeCCCCCChhHHHHHHHHHh--------C-CeeEEEecccchhccc----------CcchH--HHHHHHHH---Hhh
Q 004267 517 GVLFYGPPGCGKTLLAKAIANEC--------Q-ANFISVKGPELLTMWF----------GESEA--NVREIFDK---ARQ 572 (764)
Q Consensus 517 gill~GppGtGKT~lak~lA~~~--------~-~~~i~v~~~~l~~~~~----------g~se~--~i~~~f~~---a~~ 572 (764)
-.+++|+||||||++|..++... + .+.+..+..++...+. ..... .....++. +.
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~- 85 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPE- 85 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGG-
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhccc-
Confidence 47899999999999998865442 3 4444455554532221 11111 11233333 33
Q ss_pred CCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCCCCCccCCCCCccceEEeecCC
Q 004267 573 SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLP 652 (764)
Q Consensus 573 ~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p 652 (764)
...++|+|||++.+.+.+.... +. .+ +|..|.... ...+-||.+|+.++.||.++.. |++..+++++|
T Consensus 86 ~~~~vliIDEAq~l~~~~~~~~----e~-~r----ll~~l~~~r-~~~~~iil~tq~~~~l~~~lr~--ri~~~~~l~~~ 153 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVWPARSAGS----KI-PE----NVQWLNTHR-HQGIDIFVLTQGPKLLDQNLRT--LVRKHYHIASN 153 (199)
T ss_dssp GTTCEEEETTGGGTSBCCCTTC----CC-CH----HHHGGGGTT-TTTCEEEEEESCGGGBCHHHHT--TEEEEEEEEEC
T ss_pred cCceEEEEEChhhhccCccccc----hh-HH----HHHHHHhcC-cCCeEEEEECCCHHHHhHHHHH--HhheEEEEcCc
Confidence 3457999999999987653221 11 12 444444322 3345567777779999999876 99999999876
Q ss_pred CH
Q 004267 653 DE 654 (764)
Q Consensus 653 ~~ 654 (764)
..
T Consensus 154 ~~ 155 (199)
T 2r2a_A 154 KM 155 (199)
T ss_dssp SS
T ss_pred cc
Confidence 44
No 194
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.51 E-value=8.2e-08 Score=104.83 Aligned_cols=213 Identities=14% Similarity=0.145 Sum_probs=115.7
Q ss_pred cccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHH-HHHhCCeeE-EEecc---cchhcc--
Q 004267 483 IGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAI-ANECQANFI-SVKGP---ELLTMW-- 555 (764)
Q Consensus 483 i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~l-A~~~~~~~i-~v~~~---~l~~~~-- 555 (764)
|.|++.+|+.|.-.+..... . .+..-++||.|+||| ||++|+++ +..+....+ ...++ .+....
T Consensus 215 I~G~e~vK~aLll~L~GG~~--k------~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~ss~~gLt~s~r~ 285 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCVG--K------NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRRTELTDLTAVLKE 285 (506)
T ss_dssp STTCHHHHHHHHHHHTTCCS--S------GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGGCCHHHHSEEEEE
T ss_pred cCCCHHHHHHHHHHHcCCcc--c------cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCCCCccCceEEEEc
Confidence 66888887766433221110 0 122236999999999 99999999 776533222 11111 111100
Q ss_pred -cCcchHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCC-------CCCCcEEEEecC
Q 004267 556 -FGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGM-------SAKKTVFIIGAT 627 (764)
Q Consensus 556 -~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~-------~~~~~v~vi~aT 627 (764)
-| ..-. .-.+..|.. .++|+|||+.+- ......|+..|+.. .-..++.||||+
T Consensus 286 ~tG-~~~~-~G~l~LAdg---Gvl~lDEIn~~~--------------~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~ 346 (506)
T 3f8t_A 286 DRG-WALR-AGAAVLADG---GILAVDHLEGAP--------------EPHRWALMEAMDKGTVTVDGIALNARCAVLAAI 346 (506)
T ss_dssp SSS-EEEE-ECHHHHTTT---SEEEEECCTTCC--------------HHHHHHHHHHHHHSEEEETTEEEECCCEEEEEE
T ss_pred CCC-cccC-CCeeEEcCC---CeeehHhhhhCC--------------HHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEe
Confidence 01 0000 112233433 399999998853 34566666666532 113468899999
Q ss_pred CCCC-----------CCCccCCCCCccceEEee-cCCCHHHH---------HHHHH---HHhc----cCCCCCcccHHHH
Q 004267 628 NRPD-----------IIDPALLRPGRLDQLIYI-PLPDEDSR---------HQIFK---ACLR----KSPVSKDVDLRAL 679 (764)
Q Consensus 628 n~~~-----------~ld~allrpgRf~~~i~~-~~p~~~~r---------~~Il~---~~~~----~~~~~~~~~l~~l 679 (764)
|..+ .|.++++. |||..+.+ ..|+.+.- .+.++ .+.+ ...++++ ..+.+
T Consensus 347 NP~~~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~e-a~~yI 423 (506)
T 3f8t_A 347 NPGEQWPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEE-ARKRL 423 (506)
T ss_dssp CCCC--CCSCGGGGCCSCHHHHT--TCSEEEETTC--------------CCHHHHHHHHHHHHHHCSCCEECHH-HHHHH
T ss_pred CcccccCCCCCccccCCChHHhh--heeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHH-HHHHH
Confidence 9865 67788888 99975543 45554321 11121 1222 1112211 11111
Q ss_pred HH-----------------HCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCCCccccccccccccccccHHHHH
Q 004267 680 AK-----------------YTQGFSGADITEICQRACKYAIRENIEKDIERERRRRDNPEAMDEDAAEDEVSEIKAAHFE 742 (764)
Q Consensus 680 a~-----------------~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~ 742 (764)
.+ ..-|.|.+.+..+++-|-..|.-+. ...|+.+|+.
T Consensus 424 ~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~g--------------------------R~~V~~eDV~ 477 (506)
T 3f8t_A 424 EHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRL--------------------------SDDVEPEDVD 477 (506)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTT--------------------------CSEECHHHHH
T ss_pred HHHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcC--------------------------cCCCCHHHHH
Confidence 10 1336777888888777776665543 2369999999
Q ss_pred HHHHhcCCCC
Q 004267 743 ESMKFARRSI 752 (764)
Q Consensus 743 ~a~~~~~~s~ 752 (764)
.|+.-++.|+
T Consensus 478 ~Ai~L~~~Sl 487 (506)
T 3f8t_A 478 IAAELVDWYL 487 (506)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998877665
No 195
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.49 E-value=4.5e-08 Score=105.95 Aligned_cols=120 Identities=18% Similarity=0.160 Sum_probs=78.2
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEEccccccCC
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAP 315 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~ 315 (764)
++++.+++.++|+||||||||||+++|++..+..++.++.++- .....++.+| +..++|+||++.+..
T Consensus 163 ~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~------~~~~~lg~~~------q~~~~l~dd~~~~~~ 230 (377)
T 1svm_A 163 VYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLD------RLNFELGVAI------DQFLVVFEDVKGTGG 230 (377)
T ss_dssp HHCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTT------THHHHHGGGT------TCSCEEETTCCCSTT
T ss_pred ccccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccch------hHHHHHHHhc------chhHHHHHHHHHHHH
Confidence 3588999999999999999999999999998877655443321 0111233333 235679999999876
Q ss_pred -CCCCCc-hHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCChhhhccCCcceEEEecC
Q 004267 316 -KREKTH-GEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGV 375 (764)
Q Consensus 316 -~~~~~~-~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~rf~~~i~i~~ 375 (764)
.++... .... ....+.+.+++ .+.|+.++|+++.+ +++.++++++..+....
T Consensus 231 ~~r~l~~~~~~~--~~~~l~~~ldG-----~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 231 ESRDLPSGQGIN--NLDNLRDYLDG-----SVKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp TTTTCCCCSHHH--HHHTTHHHHHC-----SSCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred HHhhccccCcch--HHHHHHHHhcC-----CCeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 332211 1111 12334445554 34567789999999 78888888877655543
No 196
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.47 E-value=7.4e-06 Score=87.61 Aligned_cols=182 Identities=18% Similarity=0.180 Sum_probs=104.7
Q ss_pred cccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhh-------
Q 004267 207 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIM------- 279 (764)
Q Consensus 207 ~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~------- 279 (764)
-..+.|-+++++.|.+.+.. +..++|+||+|+|||+|++.+++..+ .+.+++....
T Consensus 11 ~~~~~gR~~el~~L~~~l~~---------------~~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~~~~ 73 (350)
T 2qen_A 11 REDIFDREEESRKLEESLEN---------------YPLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERGHIT 73 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHH---------------CSEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTTCBC
T ss_pred hHhcCChHHHHHHHHHHHhc---------------CCeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccccCCC
Confidence 34588999999998877652 25899999999999999999999876 5556654321
Q ss_pred -----h---hcc-------------------------chhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHH
Q 004267 280 -----S---KLA-------------------------GESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVER 326 (764)
Q Consensus 280 -----~---~~~-------------------------g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~ 326 (764)
. ... ......+..+.+.+....|.+|+|||++.+........ .
T Consensus 74 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~----~ 149 (350)
T 2qen_A 74 REELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGG----K 149 (350)
T ss_dssp HHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTT----H
T ss_pred HHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccch----h
Confidence 0 000 00111122222222223489999999998764110001 1
Q ss_pred HHHHHHHHHhhcccCCCeEEEEEecCCCCCCChh-------hhccCCcceEEEecCCChHHHHHHHHHHhcCCCC-CCch
Q 004267 327 RIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPA-------LRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDDV 398 (764)
Q Consensus 327 ~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld~a-------l~r~~rf~~~i~i~~p~~~~R~~il~~~~~~~~l-~~~~ 398 (764)
.+...|..+++.. .++.+|.+++....+... -.-.+|+...+.++..+.++-.+++......... ....
T Consensus 150 ~~~~~L~~~~~~~---~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~ 226 (350)
T 2qen_A 150 ELLALFAYAYDSL---PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPEN 226 (350)
T ss_dssp HHHHHHHHHHHHC---TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHH
T ss_pred hHHHHHHHHHHhc---CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 2333344444432 234444443321101110 0012366678999999999988888766543322 2334
Q ss_pred hhhHHhhhcCCCch
Q 004267 399 DLERIAKDTHGYVG 412 (764)
Q Consensus 399 ~l~~la~~t~g~~~ 412 (764)
.+..+...+.|+..
T Consensus 227 ~~~~i~~~tgG~P~ 240 (350)
T 2qen_A 227 EIEEAVELLDGIPG 240 (350)
T ss_dssp HHHHHHHHHTTCHH
T ss_pred HHHHHHHHhCCCHH
Confidence 56777888888764
No 197
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.45 E-value=1.8e-07 Score=92.41 Aligned_cols=71 Identities=25% Similarity=0.433 Sum_probs=47.4
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHh---CCeEEEEechhhhhhccchh-HHHHHHHHHHHHhcCCeEEEEccccccC
Q 004267 242 PKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGES-ESNLRKAFEEAEKNAPSIIFIDEIDSIA 314 (764)
Q Consensus 242 ~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~~~g~~-~~~l~~vf~~a~~~~p~il~iDEid~l~ 314 (764)
+.+++|+||||||||+|++++++.+ +..++.++++++........ ...+...+..... +.+|+|||++...
T Consensus 54 ~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~lilDei~~~~ 128 (202)
T 2w58_A 54 MKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTMNEKLDYIKK--VPVLMLDDLGAEA 128 (202)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC---CCCHHHHHHHHH--SSEEEEEEECCC-
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHHHhccchHHHHHHHhcC--CCEEEEcCCCCCc
Confidence 3789999999999999999999987 56677888877654322110 0011223333332 3599999997643
No 198
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.42 E-value=5.9e-06 Score=88.60 Aligned_cols=179 Identities=17% Similarity=0.195 Sum_probs=104.5
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhh------
Q 004267 206 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIM------ 279 (764)
Q Consensus 206 ~~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~------ 279 (764)
....+.|-+++++.|.+ +.. ..++|+||+|+|||+|++.+++..+..++.+++....
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~----------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA----------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYIS 73 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS----------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCCC
T ss_pred CHHHhcChHHHHHHHHH-hcC----------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCCC
Confidence 34567888888888876 421 3799999999999999999999987767777765320
Q ss_pred -hhccc---------------------------------h------hHHHHHHHHHHHHhc--CCeEEEEccccccCCCC
Q 004267 280 -SKLAG---------------------------------E------SESNLRKAFEEAEKN--APSIIFIDEIDSIAPKR 317 (764)
Q Consensus 280 -~~~~g---------------------------------~------~~~~l~~vf~~a~~~--~p~il~iDEid~l~~~~ 317 (764)
..... . ....+..+++..... .|.+|+|||++.+....
T Consensus 74 ~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~ 153 (357)
T 2fna_A 74 YKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLR 153 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCT
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccC
Confidence 00000 0 011234444444432 38899999999886421
Q ss_pred CCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCChh-------hhccCCcceEEEecCCChHHHHHHHHHHhc
Q 004267 318 EKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPA-------LRRFGRFDREIDIGVPDEVGRLEVLRIHTK 390 (764)
Q Consensus 318 ~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld~a-------l~r~~rf~~~i~i~~p~~~~R~~il~~~~~ 390 (764)
... +...|..+.+.. .++.+|.+++....+... -.-.+|+...+.++..+.++..+++...+.
T Consensus 154 ~~~-------~~~~l~~~~~~~---~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~ 223 (357)
T 2fna_A 154 GVN-------LLPALAYAYDNL---KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQ 223 (357)
T ss_dssp TCC-------CHHHHHHHHHHC---TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHH
T ss_pred chh-------HHHHHHHHHHcC---CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHH
Confidence 111 112222233322 234444444432111111 001236667899999999998888876553
Q ss_pred CCCCCCchhhhHHhhhcCCCch
Q 004267 391 NMKLSDDVDLERIAKDTHGYVG 412 (764)
Q Consensus 391 ~~~l~~~~~l~~la~~t~g~~~ 412 (764)
......+ +...+...+.|+..
T Consensus 224 ~~~~~~~-~~~~i~~~t~G~P~ 244 (357)
T 2fna_A 224 EADIDFK-DYEVVYEKIGGIPG 244 (357)
T ss_dssp HHTCCCC-CHHHHHHHHCSCHH
T ss_pred HcCCCCC-cHHHHHHHhCCCHH
Confidence 2222222 13778888888754
No 199
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.41 E-value=2.8e-07 Score=100.78 Aligned_cols=166 Identities=22% Similarity=0.291 Sum_probs=98.4
Q ss_pred cceeeeCCCCCChhHHHHHHHHHh---CCeeEEEecccchhc-------------ccCcchHHHHHHHHHHhhCCCeEEE
Q 004267 516 KGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTM-------------WFGESEANVREIFDKARQSAPCVLF 579 (764)
Q Consensus 516 ~gill~GppGtGKT~lak~lA~~~---~~~~i~v~~~~l~~~-------------~~g~se~~i~~~f~~a~~~~p~iif 579 (764)
..++++|++|||||++|+++...+ +.+|+.++++.+... |.|... .....|+.|.. .++|
T Consensus 161 ~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~~g~~tga~~-~~~g~~~~a~~---gtlf 236 (387)
T 1ny5_A 161 CPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVS-SKEGFFELADG---GTLF 236 (387)
T ss_dssp SCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCTTSSTTCCS-CBCCHHHHTTT---SEEE
T ss_pred CCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCCCCCCCCccc-ccCCceeeCCC---cEEE
Confidence 448999999999999999999876 368999998765321 112111 12245666655 4999
Q ss_pred EecccchhhccCCCCCCCCcchHHHHHHHHHhhcCC-----CC----CCcEEEEecCCCCC-------CCCccCCCCCcc
Q 004267 580 FDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGM-----SA----KKTVFIIGATNRPD-------IIDPALLRPGRL 643 (764)
Q Consensus 580 iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~-----~~----~~~v~vi~aTn~~~-------~ld~allrpgRf 643 (764)
+|||+.+.. .+...||..|+.. .. ..++-||+|||+.- .+.+.|.- |+
T Consensus 237 ldei~~l~~--------------~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~~~~g~fr~dl~~--rl 300 (387)
T 1ny5_A 237 LDEIGELSL--------------EAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYY--RL 300 (387)
T ss_dssp EESGGGCCH--------------HHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHHHTTSSCHHHHH--HH
T ss_pred EcChhhCCH--------------HHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCHHHHHHcCCccHHHHH--hh
Confidence 999999743 3344455544421 11 12577999999631 22223222 33
Q ss_pred c-eEEeecCCCH--HHHHHHHHHHhcc----CCCC-Cccc---HHHHHHHCCCCCHHHHHHHHHHHHHH
Q 004267 644 D-QLIYIPLPDE--DSRHQIFKACLRK----SPVS-KDVD---LRALAKYTQGFSGADITEICQRACKY 701 (764)
Q Consensus 644 ~-~~i~~~~p~~--~~r~~Il~~~~~~----~~~~-~~~~---l~~la~~~~g~sg~di~~~~~~a~~~ 701 (764)
. ..|++|+... ++...+++.++++ .... ..++ +..|..+.--.+-++|+++++.|+..
T Consensus 301 ~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~~wpGNvreL~~~i~~~~~~ 369 (387)
T 1ny5_A 301 GVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLF 369 (387)
T ss_dssp TTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHSCCTTHHHHHHHHHHHHHHH
T ss_pred cCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 2 4566666542 5566666665532 2221 1233 33444443233456999999988864
No 200
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.40 E-value=1.1e-07 Score=111.67 Aligned_cols=23 Identities=35% Similarity=0.522 Sum_probs=20.4
Q ss_pred hCCCCCceEEEECCCCCCHHHHH
Q 004267 237 IGVKPPKGILLYGPPGSGKTLIA 259 (764)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtLa 259 (764)
+.+.+++.+.|+||+|||||||+
T Consensus 39 l~i~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 39 VEIPRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp EEEETTSEEEEECSTTSSHHHHH
T ss_pred EEECCCCEEEEECCCCCCHHHHh
Confidence 45677899999999999999997
No 201
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.37 E-value=2.2e-06 Score=82.93 Aligned_cols=26 Identities=31% Similarity=0.620 Sum_probs=23.3
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCe
Q 004267 244 GILLYGPPGSGKTLIARAVANETGAF 269 (764)
Q Consensus 244 ~vLL~GppGtGKTtLar~la~~l~~~ 269 (764)
.++|+||||||||||++.|++.++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~ 27 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKR 27 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 58899999999999999999998643
No 202
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.36 E-value=1.2e-07 Score=100.22 Aligned_cols=70 Identities=26% Similarity=0.375 Sum_probs=46.5
Q ss_pred CcceeeeCCCCCChhHHHHHHHHHhC----CeeEEEecccchhcccCcc-hHHHHHHHHHHhhCCCeEEEEecccch
Q 004267 515 SKGVLFYGPPGCGKTLLAKAIANECQ----ANFISVKGPELLTMWFGES-EANVREIFDKARQSAPCVLFFDELDSI 586 (764)
Q Consensus 515 ~~gill~GppGtGKT~lak~lA~~~~----~~~i~v~~~~l~~~~~g~s-e~~i~~~f~~a~~~~p~iifiDEid~l 586 (764)
..+++|+||||||||+||+++|..+. .+++.+..++++..+.+.. ...+...+..... +.+|||||++..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~--~~lLiiDdig~~ 226 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVKN--VPVLILDDIGAE 226 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHHHHT--SSEEEEETCCC-
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHHhcC--CCEEEEcCCCCC
Confidence 56799999999999999999998654 6778888887765433211 1112222333322 359999999664
No 203
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.34 E-value=4.6e-06 Score=89.27 Aligned_cols=166 Identities=17% Similarity=0.223 Sum_probs=95.4
Q ss_pred cceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccch------------h---cccCc---------------------c
Q 004267 516 KGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL------------T---MWFGE---------------------S 559 (764)
Q Consensus 516 ~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~------------~---~~~g~---------------------s 559 (764)
..++++||+|+|||+|++.++...+ .+.+++.... . ..++. .
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 109 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPR 109 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGG
T ss_pred CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccc
Confidence 4699999999999999999999875 5555543221 0 00110 0
Q ss_pred hHHHHHHHH----HHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCC----
Q 004267 560 EANVREIFD----KARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPD---- 631 (764)
Q Consensus 560 e~~i~~~f~----~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~---- 631 (764)
...+..+++ .+....|.+|||||++.+..... .....++..|-..++.. .++.+|.|++...
T Consensus 110 ~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~-------~~~~~~~~~L~~~~~~~---~~~~~il~g~~~~~l~~ 179 (350)
T 2qen_A 110 KLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGS-------RGGKELLALFAYAYDSL---PNLKIILTGSEVGLLHD 179 (350)
T ss_dssp GCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTT-------TTTHHHHHHHHHHHHHC---TTEEEEEEESSHHHHHH
T ss_pred cchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCc-------cchhhHHHHHHHHHHhc---CCeEEEEECCcHHHHHH
Confidence 112233332 23222389999999999864210 01123333333333322 2455555544321
Q ss_pred -----CCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCCCCHHHHHHHHH
Q 004267 632 -----IIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQ 696 (764)
Q Consensus 632 -----~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~~g~sg~di~~~~~ 696 (764)
.....+ .||+...+.+++.+.++..++++..+...+.. .+..+..+...+.|+- .-+..++.
T Consensus 180 ~l~~~~~~~~l--~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~tgG~P-~~l~~~~~ 247 (350)
T 2qen_A 180 FLKITDYESPL--YGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLDGIP-GWLVVFGV 247 (350)
T ss_dssp HHCTTCTTSTT--TTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHTTCH-HHHHHHHH
T ss_pred HHhhcCCCCcc--ccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCH-HHHHHHHH
Confidence 111222 25777899999999999999998877554433 2335667778887754 44555544
No 204
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.31 E-value=6e-07 Score=88.37 Aligned_cols=126 Identities=20% Similarity=0.255 Sum_probs=75.7
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh--------C-CeEEEEechhhhhhcc----------ch-----hHHHHHHHHHHHH
Q 004267 243 KGILLYGPPGSGKTLIARAVANET--------G-AFFFCINGPEIMSKLA----------GE-----SESNLRKAFEEAE 298 (764)
Q Consensus 243 ~~vLL~GppGtGKTtLar~la~~l--------~-~~~i~v~~~~l~~~~~----------g~-----~~~~l~~vf~~a~ 298 (764)
..+|++|+||||||+++..++... | .+++..+..++..... .. ....+...+.. .
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~-~ 84 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKK-P 84 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTS-G
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhc-c
Confidence 468999999999999988865442 3 4444555444422111 00 11222222211 2
Q ss_pred hcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCChhhhccCCcceEEEecCCCh
Q 004267 299 KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDE 378 (764)
Q Consensus 299 ~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~rf~~~i~i~~p~~ 378 (764)
....++|+|||++.+.+.+...... ..++..+.... ...+-+|.+++.+..++..++. |++..+++..|..
T Consensus 85 ~~~~~vliIDEAq~l~~~~~~~~e~------~rll~~l~~~r-~~~~~iil~tq~~~~l~~~lr~--ri~~~~~l~~~~~ 155 (199)
T 2r2a_A 85 ENIGSIVIVDEAQDVWPARSAGSKI------PENVQWLNTHR-HQGIDIFVLTQGPKLLDQNLRT--LVRKHYHIASNKM 155 (199)
T ss_dssp GGTTCEEEETTGGGTSBCCCTTCCC------CHHHHGGGGTT-TTTCEEEEEESCGGGBCHHHHT--TEEEEEEEEECSS
T ss_pred ccCceEEEEEChhhhccCccccchh------HHHHHHHHhcC-cCCeEEEEECCCHHHHhHHHHH--HhheEEEEcCccc
Confidence 3446899999999997665322111 12444554433 2345556677779999999987 9998888876543
No 205
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.31 E-value=1.1e-06 Score=95.37 Aligned_cols=167 Identities=23% Similarity=0.305 Sum_probs=98.5
Q ss_pred cceeeeCCCCCChhHHHHHHHHHhCC--eeEEEecccchhc-----ccCcc-------hHHHHHHHHHHhhCCCeEEEEe
Q 004267 516 KGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTM-----WFGES-------EANVREIFDKARQSAPCVLFFD 581 (764)
Q Consensus 516 ~gill~GppGtGKT~lak~lA~~~~~--~~i~v~~~~l~~~-----~~g~s-------e~~i~~~f~~a~~~~p~iifiD 581 (764)
..++++|++||||+++|+++...++. +|+.+++..+-.. .+|.. .+.-...|+.|... .||+|
T Consensus 153 ~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~~~g~~tga~~~~~g~~~~a~~g---tlfld 229 (368)
T 3dzd_A 153 APVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHEKGAFTGALTRKKGKLELADQG---TLFLD 229 (368)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEECSCSSSSCCCCEECHHHHTTTS---EEEEE
T ss_pred hhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCccccccCCcccccCChHhhcCCC---eEEec
Confidence 34999999999999999999987654 3999999865211 11110 01112356666544 89999
Q ss_pred cccchhhccCCCCCCCCcchHHHHHHHHHhhcCC-----CC----CCcEEEEecCCCC-------CCCCccCCCCCccce
Q 004267 582 ELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGM-----SA----KKTVFIIGATNRP-------DIIDPALLRPGRLDQ 645 (764)
Q Consensus 582 Eid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~-----~~----~~~v~vi~aTn~~-------~~ld~allrpgRf~~ 645 (764)
||+.+.. .+...||..|+.. .. .-++-+|+|||+. ..+.+.|.. |+..
T Consensus 230 ei~~l~~--------------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~v~~g~fr~dL~~--rl~~ 293 (368)
T 3dzd_A 230 EVGELDQ--------------RVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEEEIKKGNFREDLYY--RLSV 293 (368)
T ss_dssp TGGGSCH--------------HHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHHHHHHTTSSCHHHHH--HHTS
T ss_pred ChhhCCH--------------HHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHH--HhCC
Confidence 9999743 3445555555421 11 1246688999853 122223332 4432
Q ss_pred -EEeecCCCH--HHHHHHHHHHhccC----CCC-Cccc---HHHHHHHCCCCCHHHHHHHHHHHHHH
Q 004267 646 -LIYIPLPDE--DSRHQIFKACLRKS----PVS-KDVD---LRALAKYTQGFSGADITEICQRACKY 701 (764)
Q Consensus 646 -~i~~~~p~~--~~r~~Il~~~~~~~----~~~-~~~~---l~~la~~~~g~sg~di~~~~~~a~~~ 701 (764)
.|++|+..+ ++...+++.++++. +.. ..++ +..|..+.-.-+-++++++++.|+..
T Consensus 294 ~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpGNvreL~n~i~~~~~~ 360 (368)
T 3dzd_A 294 FQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQEWKGNVRELKNLIERAVIL 360 (368)
T ss_dssp EEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTCCCTTHHHHHHHHHHHHHHT
T ss_pred eEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 577887755 56666666665332 111 1122 44444444234568899998888754
No 206
>2jv2_A Putative uncharacterized protein PH1500; AAA ATPase NC-domain-like, unknown function; NMR {Pyrococcus horikoshii}
Probab=98.31 E-value=3.1e-06 Score=69.77 Aligned_cols=71 Identities=23% Similarity=0.296 Sum_probs=58.2
Q ss_pred CCcEEEeccccCcccCcchhhHHHHHHHhhhhcCccccCCcEEEEecCceeEEEEEEEecCCceEeeCCCceEEecC
Q 004267 115 YGKRVHILPIDDTIEGVTGNLFDAFLRPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIFCEG 191 (764)
Q Consensus 115 ~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~f~v~~~~p~~~~~~~~~t~i~~~~ 191 (764)
.|++|+++|.. ++. +.++ +..|++++|. .|||.+||.|.+...++.+.|+|++++|. +++|+++|.|.+.+
T Consensus 11 ~A~kVvLAP~~-~i~-~~~~-~~~~lk~~L~--grPV~~GD~I~i~~~G~~i~F~Vv~t~P~-~V~Vt~~T~I~i~~ 81 (83)
T 2jv2_A 11 IMSELKLKPLP-KVE-LPPD-FVDVIRIKLQ--GKTVRTGDVIGISILGKEVKFKVVQAYPS-PLRVEDRTKITLVT 81 (83)
T ss_dssp CCCEEEEEESS-SCC-CCHH-HHHHHHHHHT--TSEECTTCEEEEEETTEEEEEEEEEEESS-SEECCTTSEEEECC
T ss_pred EEEEEEEcCCC-cee-cCcc-HHHHHHHHHC--CCCccCCCEEEEeeCCCEEEEEEEEecCc-cEEECCCcEEEEEe
Confidence 57899999984 333 4443 4789999996 59999999999865557899999999999 99999999998864
No 207
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=98.24 E-value=3.2e-07 Score=76.63 Aligned_cols=69 Identities=22% Similarity=0.346 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhcCCCCCCchhhhHHhhhcCCCchHHHHHHHHHHHHHHHHhhccccccccchhhHHHhhhhcccchhhhc
Q 004267 379 VGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVSNEHFQT 458 (764)
Q Consensus 379 ~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (764)
++|.+||+.|++++++..++++..++..|+||+|+||.++|++|++.++++.. ..++.+||..
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~-----------------~~i~~~df~~ 63 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNR-----------------YVILQSDLEE 63 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTTC-----------------SEECHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc-----------------CCcCHHHHHH
Confidence 36899999999999998899999999999999999999999999999987642 2477888888
Q ss_pred cccccC
Q 004267 459 ALGTSN 464 (764)
Q Consensus 459 al~~~~ 464 (764)
++..+.
T Consensus 64 Al~~v~ 69 (82)
T 2dzn_B 64 AYATQV 69 (82)
T ss_dssp HHHTTC
T ss_pred HHHHHH
Confidence 887763
No 208
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=98.24 E-value=9.5e-07 Score=91.22 Aligned_cols=32 Identities=22% Similarity=0.440 Sum_probs=27.8
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 267 (764)
++.+.+++.+.|.||+|||||||+++|++.+.
T Consensus 31 sl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 31 SLHIASGEMVAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp EEEEETTCEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 34567889999999999999999999998763
No 209
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=98.21 E-value=1.1e-06 Score=94.79 Aligned_cols=109 Identities=21% Similarity=0.305 Sum_probs=68.8
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCe--EEEEechhhhh-------------------------------hc
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGPEIMS-------------------------------KL 282 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~--~i~v~~~~l~~-------------------------------~~ 282 (764)
++.+.+++.+.|.||+|||||||+++|++..... -+.+++.++.. ..
T Consensus 23 sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~ 102 (381)
T 3rlf_A 23 NLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKL 102 (381)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHH
T ss_pred EEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHH
Confidence 3456788999999999999999999999976422 12333211100 00
Q ss_pred cc----h--------------------------hHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHH
Q 004267 283 AG----E--------------------------SESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 332 (764)
Q Consensus 283 ~g----~--------------------------~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L 332 (764)
.+ + ..++-+-.+..|....|.+|++|| +.+.++.....++
T Consensus 103 ~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDE----------Pts~LD~~~~~~l 172 (381)
T 3rlf_A 103 AGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDE----------PLSNLDAALRVQM 172 (381)
T ss_dssp TTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEES----------TTTTSCHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEEC----------CCcCCCHHHHHHH
Confidence 00 0 011123344566677899999999 5555556666777
Q ss_pred HHHhhcccCCCeEEEEEecCCC
Q 004267 333 LTLMDGLKSRAHVIVIGATNRP 354 (764)
Q Consensus 333 l~~ld~~~~~~~v~vI~atn~~ 354 (764)
...+..+....+..+|.+|++.
T Consensus 173 ~~~l~~l~~~~g~tii~vTHd~ 194 (381)
T 3rlf_A 173 RIEISRLHKRLGRTMIYVTHDQ 194 (381)
T ss_dssp HHHHHHHHHHHCCEEEEECSCH
T ss_pred HHHHHHHHHhCCCEEEEEECCH
Confidence 7777766544455667778874
No 210
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=98.21 E-value=9.1e-07 Score=91.70 Aligned_cols=32 Identities=16% Similarity=0.241 Sum_probs=27.9
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 267 (764)
++.+.+++.+.|.||+|||||||+++|++.+.
T Consensus 28 sl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 28 NMNIKRGEVTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp EEEEETTSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 34567889999999999999999999998764
No 211
>1qcs_A N-ethylmaleimide sensitive factor (NSF-N); double-PSI beta barrel alpha beta roll, fusion protein; 1.90A {Cricetulus griseus} SCOP: b.52.2.3 d.31.1.1 PDB: 1qdn_A
Probab=98.19 E-value=1.5e-05 Score=78.74 Aligned_cols=152 Identities=9% Similarity=0.074 Sum_probs=100.4
Q ss_pred EEEecccCC---CCcEEEECHHHHhhcCCCCCCEEEE-EeCCCceEEEEEEcCCCCCCCeEEEcHhHHhhcCcCCCCeEE
Q 004267 31 LVVDEAIND---DNSVVGLHPDTMDKLQIFRGDTILI-KGKKRKDTICIALADDTCEQPKIRMNKVVRSNLRVRLGDVVS 106 (764)
Q Consensus 31 ~~v~~~~~~---~~~~v~~~~~~~~~l~~~~gd~v~i-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~g~~v~ 106 (764)
++|..+..+ -.++|++||++.. .+.+|.+ .|. ....|+.+.+++.+++|.|.++..+|+|+++++||.|.
T Consensus 10 l~v~~~P~~~la~TN~~~vsp~Df~-----~~~~v~v~~~~-~~~fVft~~~~~~i~~G~Igls~~QR~wa~lsl~~~v~ 83 (211)
T 1qcs_A 10 MQAARCPTDELSLSNCAVVSEKDYQ-----SGQHVIVRTSP-NHKYIFTLRTHPSVVPGSVAFSLPQRKWAGLSIGQEIE 83 (211)
T ss_dssp EEEEECSCHHHHHHTCEEECTTTCC-----TTCEEEEEEET-TEEEEEEEEECTTSCTTEEEECHHHHHHHTCCTTCEEE
T ss_pred EEEecCCChhhhhcceEEECHHHcC-----CCceEEEEecC-CCeEEEEEecCCCCCCCEeecCHHHHhhhcccCCCcEE
Confidence 666555432 4567999999985 4556888 443 24688899999999999999999999999999999999
Q ss_pred EEecCCC---CCCcEEEe--cccc--Cc-ccCcchhhHHHHHHHhhhhcCccccCCcEEEEecCceeEEEEEEEec----
Q 004267 107 VHQCPDV---KYGKRVHI--LPID--DT-IEGVTGNLFDAFLRPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETD---- 174 (764)
Q Consensus 107 v~~~~~~---~~~~~v~~--~~~~--~~-~~~~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~f~v~~~~---- 174 (764)
|+++... .+...+.+ .... .. ...+..+.+...+++.|. ..++.+|+.+.+...+..+.+.|.+++
T Consensus 84 V~~y~~~~~~~~l~si~lEidf~~k~~~~~~~~D~dela~~f~~~F~--~Qift~gQ~l~f~~~g~~l~l~V~~v~~~d~ 161 (211)
T 1qcs_A 84 VALYSFDKAKQCIGTMTIEIDFLQKKNIDSNPYDTDKMAAEFIQQFN--NQAFSVGQQLVFSFNDKLFGLLVKDIEAMDP 161 (211)
T ss_dssp EEEECCCHHHHBEEEEEEEEEESCGGGCCCCEEEHHHHHHHHHHHHT--TCEEETTCEEEEEETTEEEEEEEEEEEECCC
T ss_pred EEEecCCCCCceEEEEEEEEEehhcCCCCCcccCHHHHHHHHHHHHc--CCCCCCCCEEEEEECCcEEEEEEeEEEEecc
Confidence 9998421 11222333 2221 11 122443433444444443 356899999877555545556776631
Q ss_pred -------------CCceEeeCCCceEEec
Q 004267 175 -------------PGEYCVVAPDTEIFCE 190 (764)
Q Consensus 175 -------------p~~~~~~~~~t~i~~~ 190 (764)
+...++++++|.|.+.
T Consensus 162 ~~~~~~~~~~~~~~~~~GiL~~~T~i~F~ 190 (211)
T 1qcs_A 162 SILKGEPASGKRQKIEVGLVVGNSQVAFE 190 (211)
T ss_dssp CTTC-------CCBCSEEECCTTCEEEEE
T ss_pred cccccCcccccCCCcceeEEcCCcEEEEE
Confidence 1246889999987654
No 212
>1cr5_A SEC18P (residues 22 - 210); double-PSI beta barrel, vesicle fusion, endocytosis/exocytosis complex; 2.30A {Saccharomyces cerevisiae} SCOP: b.52.2.3 d.31.1.1
Probab=98.19 E-value=3.4e-05 Score=74.80 Aligned_cols=150 Identities=11% Similarity=0.044 Sum_probs=98.1
Q ss_pred eEEEecccCC---CCcEEEECHHHHhhcCCCCCCEEEEEeCCCceEEEEEEcCCCCCCCeEEEcHhHHhhcCcCCCCeEE
Q 004267 30 RLVVDEAIND---DNSVVGLHPDTMDKLQIFRGDTILIKGKKRKDTICIALADDTCEQPKIRMNKVVRSNLRVRLGDVVS 106 (764)
Q Consensus 30 ~~~v~~~~~~---~~~~v~~~~~~~~~l~~~~gd~v~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~g~~v~ 106 (764)
.++|..+..+ -.++|++||++.. .+-+|+|.+ ..|+.+.+++.+++|.|.++..+|+|+++++||.|.
T Consensus 7 ~l~v~~~P~~~la~TN~~~vsp~Df~-----~~~~v~v~~----~fVft~~~~~~i~~G~I~ls~~QR~wa~lsl~~~v~ 77 (189)
T 1cr5_A 7 HLKVSNCPNNSYALANVAAVSPNDFP-----NNIYIIIDN----LFVFTTRHSNDIPPGTIGFNGNQRTWGGWSLNQDVQ 77 (189)
T ss_dssp EEEEEECCCHHHHTTTEEEECTTTSC-----SSCEEEETT----TEEEEEEECTTSCTTEEEECHHHHHHHTCCTTCEEE
T ss_pred EEEEEeCCChhhhhcceEEECHHHcC-----CCceEEEcC----cEEEEEecCCCCCCCEEecCHHHHHhhcccCCCeEE
Confidence 3677655442 5678999999986 234788832 478899999999999999999999999999999999
Q ss_pred EEecCCC------CCCcEEEec--ccc--Cc-ccCcchhhHHHHHHHhhhhcCccccCCcEEEEecCceeEEEEEEEec-
Q 004267 107 VHQCPDV------KYGKRVHIL--PID--DT-IEGVTGNLFDAFLRPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETD- 174 (764)
Q Consensus 107 v~~~~~~------~~~~~v~~~--~~~--~~-~~~~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~f~v~~~~- 174 (764)
|+++... .+...+.+. -.. .. ...+..+.+...+++.|. ..++.+|+.+.+...+..+.+.|.++.
T Consensus 78 V~~y~p~~~~~~~~~l~si~lEidf~~k~~~~~~~~D~dela~~f~~~F~--~Qift~gQ~l~f~~~g~~l~l~V~~i~~ 155 (189)
T 1cr5_A 78 AKAFDLFKYSGKQSYLGSIDIDISFRARGKAVSTVFDQDELAKQFVRCYE--SQIFSPTQYLIMEFQGHFFDLKIRNVQA 155 (189)
T ss_dssp EEECCHHHHHTTCCEEEEEEEEEEECC-------CCCHHHHHHHHHHHHT--TCEECTTCEEEEEETTEEEEEEEEEEEE
T ss_pred EEEeCCccCCCCcceEEEEEEEEEehhcCCCCCCccCHHHHHHHHHHHHc--CCCCCCCCEEEEEECCcEEEEEEEEEEE
Confidence 9998311 112223331 121 11 223444434444444443 356899999877555445556666542
Q ss_pred ---------------CCceEeeCCCceEEec
Q 004267 175 ---------------PGEYCVVAPDTEIFCE 190 (764)
Q Consensus 175 ---------------p~~~~~~~~~t~i~~~ 190 (764)
+...++++++|.|.+.
T Consensus 156 ~d~~~~~~~~~~~~~~~~~GiL~~~T~i~F~ 186 (189)
T 1cr5_A 156 IDLGDIEPTSAVATGIETKGILTKQTQINFF 186 (189)
T ss_dssp ECTTSSSCSSCCBCSTTCCEECCTTCEEEEE
T ss_pred eccccccccCcCCCCccceEEEcCCcEEEEE
Confidence 1236888888877543
No 213
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.17 E-value=7.4e-07 Score=94.21 Aligned_cols=71 Identities=20% Similarity=0.388 Sum_probs=46.6
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC----CeEEEEechhhhhhccchh-HHHHHHHHHHHHhcCCeEEEEcccccc
Q 004267 241 PPKGILLYGPPGSGKTLIARAVANETG----AFFFCINGPEIMSKLAGES-ESNLRKAFEEAEKNAPSIIFIDEIDSI 313 (764)
Q Consensus 241 ~~~~vLL~GppGtGKTtLar~la~~l~----~~~i~v~~~~l~~~~~g~~-~~~l~~vf~~a~~~~p~il~iDEid~l 313 (764)
.+.+++|+||||||||+|+++++..+. ..++.++.+++........ ...+...+.... .+.+|||||++..
T Consensus 151 ~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~ 226 (308)
T 2qgz_A 151 EQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVK--NVPVLILDDIGAE 226 (308)
T ss_dssp SCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHHHH--TSSEEEEETCCC-
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 367899999999999999999998654 6677788877655332211 111222222222 3469999999654
No 214
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.16 E-value=2e-06 Score=82.56 Aligned_cols=25 Identities=28% Similarity=0.497 Sum_probs=21.9
Q ss_pred hCCCCCceEEEECCCCCCHHHHHHH
Q 004267 237 IGVKPPKGILLYGPPGSGKTLIARA 261 (764)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtLar~ 261 (764)
+.+.+++.++|+||||||||||+++
T Consensus 4 l~i~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 4 LTIPELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEESSEEEEEECCTTSCHHHHHHH
T ss_pred ccCCCCEEEEEECCCCCCHHHHHHH
Confidence 4557788999999999999999993
No 215
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=98.16 E-value=1.7e-06 Score=92.61 Aligned_cols=32 Identities=28% Similarity=0.508 Sum_probs=28.1
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 267 (764)
++.+.+++.+.|.||+|||||||+|+|++...
T Consensus 24 sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 24 SLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp EEEECTTCEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred EEEEcCCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 34567889999999999999999999999764
No 216
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=98.15 E-value=1.6e-06 Score=87.84 Aligned_cols=32 Identities=22% Similarity=0.418 Sum_probs=28.0
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 267 (764)
++.+.+++.+.|.||+|||||||+++|++.+.
T Consensus 25 sl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 25 NLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred eEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 34568899999999999999999999998764
No 217
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.15 E-value=8.3e-06 Score=78.81 Aligned_cols=24 Identities=38% Similarity=0.635 Sum_probs=21.8
Q ss_pred eeeeCCCCCChhHHHHHHHHHhCC
Q 004267 518 VLFYGPPGCGKTLLAKAIANECQA 541 (764)
Q Consensus 518 ill~GppGtGKT~lak~lA~~~~~ 541 (764)
+.|.||||||||||++.+++..+.
T Consensus 3 i~l~G~nGsGKTTLl~~l~g~l~i 26 (178)
T 1ye8_A 3 IIITGEPGVGKTTLVKKIVERLGK 26 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHGG
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 789999999999999999998753
No 218
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=98.13 E-value=1.8e-06 Score=92.52 Aligned_cols=32 Identities=25% Similarity=0.278 Sum_probs=28.0
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 267 (764)
++.+.+++.+.|.||+|||||||+++|++...
T Consensus 48 sl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~ 79 (366)
T 3tui_C 48 SLHVPAGQIYGVIGASGAGKSTLIRCVNLLER 79 (366)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEcCCCEEEEEcCCCchHHHHHHHHhcCCC
Confidence 34567889999999999999999999998764
No 219
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.12 E-value=4.1e-06 Score=84.86 Aligned_cols=118 Identities=15% Similarity=0.201 Sum_probs=63.0
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHH--h-------CCeEEEEechhh------hh--hccc----------------
Q 004267 238 GVKPPKGILLYGPPGSGKTLIARAVANE--T-------GAFFFCINGPEI------MS--KLAG---------------- 284 (764)
Q Consensus 238 ~i~~~~~vLL~GppGtGKTtLar~la~~--l-------~~~~i~v~~~~l------~~--~~~g---------------- 284 (764)
|+.++..++|+||||+|||||++.++.. + +...+.+++... .. ...+
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 99 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAF 99 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecC
Confidence 5788899999999999999999999995 3 345667765441 00 0000
Q ss_pred hhH---HHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHH--HHHHHHHHHHhhcccCCCeEEEEEecCCCC
Q 004267 285 ESE---SNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVE--RRIVSQLLTLMDGLKSRAHVIVIGATNRPN 355 (764)
Q Consensus 285 ~~~---~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~--~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~ 355 (764)
... ..+..+.+......|.+++|||+..+....-...++.. .+....++..+..+....++.||.+++...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~ 175 (243)
T 1n0w_A 100 NTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVA 175 (243)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC----
T ss_pred CHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeee
Confidence 011 11222334445568999999999987653211101111 112333333333333333456666666543
No 220
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.12 E-value=4.2e-06 Score=81.65 Aligned_cols=34 Identities=15% Similarity=0.321 Sum_probs=28.4
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEE
Q 004267 238 GVKPPKGILLYGPPGSGKTLIARAVANETGAFFF 271 (764)
Q Consensus 238 ~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i 271 (764)
+++..++++|+||||||||++|.++|+.+...++
T Consensus 54 ~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~ 87 (212)
T 1tue_A 54 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVI 87 (212)
T ss_dssp TCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEEC
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence 3555678999999999999999999999876543
No 221
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.11 E-value=1.6e-06 Score=84.61 Aligned_cols=110 Identities=19% Similarity=0.252 Sum_probs=61.8
Q ss_pred CCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccchhcccCcchHHHHHHHHHHhhCCCeEEEEecccchhhccC
Q 004267 512 MSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRG 591 (764)
Q Consensus 512 ~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~ 591 (764)
++...+++||||||||||++|.++|+.+....+.+..+. +.+ .++.+.. ..++++||++.-
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~--s~f----------~l~~l~~--~kIiiLDEad~~----- 115 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNST--SHF----------WLEPLTD--TKVAMLDDATTT----- 115 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSS--SCG----------GGGGGTT--CSSEEEEEECHH-----
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEecc--chh----------hhcccCC--CCEEEEECCCch-----
Confidence 334457999999999999999999999865433221110 000 0111112 349999999842
Q ss_pred CCCCCCCcchHHHH-HHHHHhhcCCC------CC-----CcEEEEecCCCCCCCCc---cCCCCCccceEEeecCC
Q 004267 592 SSVGDAGGAADRVL-NQLLTEMDGMS------AK-----KTVFIIGATNRPDIIDP---ALLRPGRLDQLIYIPLP 652 (764)
Q Consensus 592 ~~~~~~~~~~~~~~-~~lL~~ld~~~------~~-----~~v~vi~aTn~~~~ld~---allrpgRf~~~i~~~~p 652 (764)
..+.+ ..+-+.|||.. .. ..--+|.|||.+=.-+. .|.+ |+. .+.||.|
T Consensus 116 ---------~~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~S--Ri~-~f~F~~~ 179 (212)
T 1tue_A 116 ---------CWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLES--RIT-VFEFPNA 179 (212)
T ss_dssp ---------HHHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHT--SCE-EEECCSC
T ss_pred ---------hHHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhh--hEE-EEEcCCC
Confidence 12222 23445566641 00 12357788886433233 3434 775 6777633
No 222
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=98.11 E-value=2.2e-06 Score=91.99 Aligned_cols=32 Identities=34% Similarity=0.367 Sum_probs=28.0
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 267 (764)
++.+.+++.+.|.||+|||||||+++|++...
T Consensus 23 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 23 SFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC
Confidence 34567889999999999999999999999764
No 223
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=98.11 E-value=2.3e-06 Score=91.92 Aligned_cols=32 Identities=28% Similarity=0.437 Sum_probs=28.0
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 267 (764)
++.+.+++.+.|.||+|||||||+++|++...
T Consensus 23 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 23 NLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 34567888999999999999999999999764
No 224
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=98.10 E-value=1.9e-06 Score=92.23 Aligned_cols=32 Identities=38% Similarity=0.511 Sum_probs=27.9
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 267 (764)
++.+.+++.+.|.||+|||||||+++|++...
T Consensus 35 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 35 SFQIREGEMVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 34567888999999999999999999999764
No 225
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.07 E-value=5e-06 Score=83.43 Aligned_cols=29 Identities=31% Similarity=0.433 Sum_probs=26.7
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 004267 238 GVKPPKGILLYGPPGSGKTLIARAVANET 266 (764)
Q Consensus 238 ~i~~~~~vLL~GppGtGKTtLar~la~~l 266 (764)
|+.++..+.|+||||||||||++.|++..
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 67889999999999999999999999854
No 226
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.07 E-value=8.3e-06 Score=81.85 Aligned_cols=109 Identities=19% Similarity=0.293 Sum_probs=61.8
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh---CCeEEEEechh----hhhh----------c------------------
Q 004267 238 GVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPE----IMSK----------L------------------ 282 (764)
Q Consensus 238 ~i~~~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~----l~~~----------~------------------ 282 (764)
|+.++..++|+||||+|||||++.+++.. +..++.++... +... +
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEKKLIIIDALMKEKEDQ 98 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTTTEEEEECCC----CT
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhCCEEEEeccccccCce
Confidence 56788899999999999999999999664 34444444221 1000 0
Q ss_pred ----cchhHHHHHHHHHHHHhcCCe--EEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCC
Q 004267 283 ----AGESESNLRKAFEEAEKNAPS--IIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRP 354 (764)
Q Consensus 283 ----~g~~~~~l~~vf~~a~~~~p~--il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~ 354 (764)
..........+.+.+....|. ++++||+..+.... + .....+...|..+. ...++.||.+++..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d--~--~~~~~~~~~l~~~~----~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 99 WSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDK--P--AMARKISYYLKRVL----NKWNFTIYATSQYA 168 (235)
T ss_dssp TBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSC--G--GGHHHHHHHHHHHH----HHTTEEEEEEEC--
T ss_pred eeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCC--H--HHHHHHHHHHHHHH----HhCCCeEEEEeccC
Confidence 001122333444455556888 99999999875321 1 11123333333332 22345666677754
No 227
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=98.07 E-value=4.7e-06 Score=85.63 Aligned_cols=31 Identities=29% Similarity=0.446 Sum_probs=27.1
Q ss_pred hCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Q 004267 237 IGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (764)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 267 (764)
+.+.+++.+.|.||+|||||||+++|++.+.
T Consensus 28 l~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 28 ISVNKGDVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp CEEETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3457788999999999999999999998764
No 228
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.05 E-value=4.6e-06 Score=85.54 Aligned_cols=32 Identities=28% Similarity=0.371 Sum_probs=28.0
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 267 (764)
++.+.+++.+.|.||+|+|||||+++|++.+.
T Consensus 35 sl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 35 SFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34567889999999999999999999998764
No 229
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.05 E-value=1.2e-05 Score=81.82 Aligned_cols=26 Identities=35% Similarity=0.492 Sum_probs=24.6
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHH
Q 004267 238 GVKPPKGILLYGPPGSGKTLIARAVA 263 (764)
Q Consensus 238 ~i~~~~~vLL~GppGtGKTtLar~la 263 (764)
|+.++..++|+||||+|||||++.++
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 67889999999999999999999998
No 230
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=98.04 E-value=2.4e-06 Score=92.22 Aligned_cols=32 Identities=31% Similarity=0.500 Sum_probs=27.9
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 267 (764)
++.+.+++.+.|.||+|||||||+++|++...
T Consensus 31 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 62 (372)
T 1v43_A 31 NLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE 62 (372)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 34567889999999999999999999998763
No 231
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=98.04 E-value=2.8e-06 Score=85.41 Aligned_cols=32 Identities=25% Similarity=0.324 Sum_probs=27.8
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 267 (764)
++.+.+++.+.|.||+|||||||+++|++.+.
T Consensus 24 sl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 24 SLSVKKGEFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp EEEEETTCEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34567888999999999999999999998764
No 232
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.02 E-value=2e-05 Score=86.08 Aligned_cols=120 Identities=26% Similarity=0.359 Sum_probs=72.7
Q ss_pred cccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhC---CeEEEEechhhhhhc---
Q 004267 209 DVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG---AFFFCINGPEIMSKL--- 282 (764)
Q Consensus 209 ~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~---~~~i~v~~~~l~~~~--- 282 (764)
.+.|-...++++.+.+.. + ......|+|+|++|||||++|+++....+ .+|+.++|..+....
T Consensus 138 ~~ig~s~~m~~l~~~i~~----------~-a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~ 206 (387)
T 1ny5_A 138 EYVFESPKMKEILEKIKK----------I-SCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEA 206 (387)
T ss_dssp CCCCCSHHHHHHHHHHHH----------H-TTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHH
T ss_pred hhhhccHHhhHHHHHHHH----------h-cCCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHH
Confidence 455555555555555442 1 12345699999999999999999988764 679999987653211
Q ss_pred --cc--------hhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhccc-----C----CC
Q 004267 283 --AG--------ESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK-----S----RA 343 (764)
Q Consensus 283 --~g--------~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-----~----~~ 343 (764)
.| .... ....|+.|. ..+||+|||+.+.+ .+...|+..++.-. . ..
T Consensus 207 elfg~~~g~~tga~~~-~~g~~~~a~---~gtlfldei~~l~~-----------~~q~~Ll~~l~~~~~~~~g~~~~~~~ 271 (387)
T 1ny5_A 207 ELFGYEKGAFTGAVSS-KEGFFELAD---GGTLFLDEIGELSL-----------EAQAKLLRVIESGKFYRLGGRKEIEV 271 (387)
T ss_dssp HHHCBCTTSSTTCCSC-BCCHHHHTT---TSEEEEESGGGCCH-----------HHHHHHHHHHHHSEECCBTCCSBEEC
T ss_pred HhcCCCCCCCCCcccc-cCCceeeCC---CcEEEEcChhhCCH-----------HHHHHHHHHHhcCcEEeCCCCceeec
Confidence 11 0000 112334433 36999999998742 23345666554311 1 12
Q ss_pred eEEEEEecCCC
Q 004267 344 HVIVIGATNRP 354 (764)
Q Consensus 344 ~v~vI~atn~~ 354 (764)
.+.+|++||..
T Consensus 272 ~~rii~at~~~ 282 (387)
T 1ny5_A 272 NVRILAATNRN 282 (387)
T ss_dssp CCEEEEEESSC
T ss_pred cEEEEEeCCCC
Confidence 56788888863
No 233
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=98.01 E-value=3.1e-06 Score=90.50 Aligned_cols=32 Identities=31% Similarity=0.478 Sum_probs=28.1
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 267 (764)
++.+.+++.+.|.||+|||||||+++|++...
T Consensus 20 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 20 SLKVESGEYFVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp EEEECTTCEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred EEEEcCCCEEEEECCCCccHHHHHHHHHcCCC
Confidence 34567889999999999999999999999764
No 234
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.00 E-value=1.2e-05 Score=79.94 Aligned_cols=39 Identities=28% Similarity=0.354 Sum_probs=33.1
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEech
Q 004267 238 GVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGP 276 (764)
Q Consensus 238 ~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~ 276 (764)
|+.++..++|+||||+|||||++.++...+...+.++..
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~ 54 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTE 54 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESS
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECC
Confidence 578889999999999999999999998656667777654
No 235
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.98 E-value=6.9e-06 Score=84.51 Aligned_cols=32 Identities=22% Similarity=0.462 Sum_probs=28.0
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 267 (764)
++.+.+++.+.|.||+|||||||+++|++.+.
T Consensus 44 sl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 44 NVHIREGEVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 34567889999999999999999999998764
No 236
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.98 E-value=4.4e-06 Score=90.25 Aligned_cols=32 Identities=38% Similarity=0.527 Sum_probs=27.9
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 267 (764)
++.+.+++.+.|.||+|||||||+++|++...
T Consensus 23 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 23 SLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC
Confidence 34567888999999999999999999999764
No 237
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.97 E-value=3.2e-06 Score=85.85 Aligned_cols=31 Identities=23% Similarity=0.407 Sum_probs=27.2
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 267 (764)
++.+.+ +.+.|.||+|||||||+++|++.+.
T Consensus 19 sl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 19 DFEMGR-DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp EEEECS-SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEECC-EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 345678 8999999999999999999999764
No 238
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.94 E-value=2.8e-05 Score=83.19 Aligned_cols=113 Identities=20% Similarity=0.317 Sum_probs=68.1
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh---CCeEEEEechhhhhh----------------ccchhHHHHHHHHHHHH
Q 004267 238 GVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSK----------------LAGESESNLRKAFEEAE 298 (764)
Q Consensus 238 ~i~~~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~----------------~~g~~~~~l~~vf~~a~ 298 (764)
|+.++.-++|+||||||||||+..++..+ +..++.+++...... .....+..+..+-....
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 56788899999999999999999998774 455666766432110 00112222222222333
Q ss_pred hcCCeEEEEccccccCCCC---C---CCchHHHHHHHHHHHHHhhcccCCCeEEEEEe
Q 004267 299 KNAPSIIFIDEIDSIAPKR---E---KTHGEVERRIVSQLLTLMDGLKSRAHVIVIGA 350 (764)
Q Consensus 299 ~~~p~il~iDEid~l~~~~---~---~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~a 350 (764)
...+.+++||.+..+.+.. + ...-....+.+.+++..|..+....++.||.+
T Consensus 137 ~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~i 194 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFT 194 (356)
T ss_dssp TSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEE
T ss_pred hcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 4678999999999887621 1 11111234556666666666655545555544
No 239
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.92 E-value=8.1e-06 Score=83.27 Aligned_cols=32 Identities=22% Similarity=0.319 Sum_probs=27.9
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 267 (764)
++.+.+++.+.|.||+|||||||+++|++.+.
T Consensus 29 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 29 NLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34567889999999999999999999998764
No 240
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.91 E-value=1.5e-05 Score=82.51 Aligned_cols=32 Identities=34% Similarity=0.455 Sum_probs=28.2
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 267 (764)
++.+.+++.+.|.||+|||||||+++|++.+.
T Consensus 39 sl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 39 TFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45678899999999999999999999998764
No 241
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.90 E-value=1e-05 Score=87.80 Aligned_cols=31 Identities=29% Similarity=0.426 Sum_probs=27.6
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANET 266 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l 266 (764)
++.+.+++.+.|.||+|||||||+++|++..
T Consensus 41 sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 41 SFSISPGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EEEECTTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred eEEEcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 3467889999999999999999999999865
No 242
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.90 E-value=7.4e-06 Score=83.86 Aligned_cols=32 Identities=13% Similarity=0.222 Sum_probs=27.9
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 267 (764)
++.+.+++.+.|.||+|+|||||+++|++.+.
T Consensus 25 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 25 NFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp EEEEETTCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34567888999999999999999999998764
No 243
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.90 E-value=3.8e-06 Score=90.14 Aligned_cols=32 Identities=28% Similarity=0.459 Sum_probs=28.1
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 267 (764)
++.+.+++.+.|.||+|||||||+++|++...
T Consensus 25 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 56 (353)
T 1oxx_K 25 NINIENGERFGILGPSGAGKTTFMRIIAGLDV 56 (353)
T ss_dssp EEEECTTCEEEEECSCHHHHHHHHHHHHTSSC
T ss_pred EEEECCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 44567889999999999999999999999763
No 244
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.89 E-value=1.3e-05 Score=82.70 Aligned_cols=32 Identities=28% Similarity=0.397 Sum_probs=28.0
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 267 (764)
++.+.+++.+.|.||+|||||||+++|++.+.
T Consensus 27 sl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 27 SLVINEGECLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 34568889999999999999999999998763
No 245
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.89 E-value=5.2e-06 Score=82.69 Aligned_cols=31 Identities=19% Similarity=0.372 Sum_probs=27.3
Q ss_pred hCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Q 004267 237 IGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (764)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 267 (764)
+.+.+++.+.|.||+|||||||+++|++.+.
T Consensus 30 l~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 30 MTIEKGNVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp EEEETTCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4567788999999999999999999998764
No 246
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.87 E-value=1.7e-05 Score=85.22 Aligned_cols=41 Identities=24% Similarity=0.301 Sum_probs=33.6
Q ss_pred hCCCCCceEEEECCCCCCHHHHHHHHHHHh---------CCeEEEEechh
Q 004267 237 IGVKPPKGILLYGPPGSGKTLIARAVANET---------GAFFFCINGPE 277 (764)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtLar~la~~l---------~~~~i~v~~~~ 277 (764)
.+++++..+.|+||||||||||++.++... +...+.+++.+
T Consensus 126 ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 126 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 478889999999999999999999999987 23556676643
No 247
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.85 E-value=1.2e-05 Score=81.92 Aligned_cols=32 Identities=31% Similarity=0.406 Sum_probs=28.0
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 267 (764)
++.+.+++.+.|.||+|+|||||+++|++.+.
T Consensus 20 sl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 20 SGEVRAGEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp EEEEETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 34567888999999999999999999998764
No 248
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.85 E-value=8.4e-05 Score=75.36 Aligned_cols=129 Identities=23% Similarity=0.197 Sum_probs=73.1
Q ss_pred cCCCCcceeeeCCCCCChhHHHHHHH--HH--hCCeeEEEecccchh------cccCc----------------------
Q 004267 511 GMSPSKGVLFYGPPGCGKTLLAKAIA--NE--CQANFISVKGPELLT------MWFGE---------------------- 558 (764)
Q Consensus 511 ~~~~~~gill~GppGtGKT~lak~lA--~~--~~~~~i~v~~~~l~~------~~~g~---------------------- 558 (764)
|+.+..-++|.||||+|||||+++++ .. .+...+.+.+.+... ..+|-
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 105 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVG 105 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC-------
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEccccccc
Confidence 55666669999999999999999998 43 344445554432110 00110
Q ss_pred --------------chHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEE
Q 004267 559 --------------SEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFII 624 (764)
Q Consensus 559 --------------se~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi 624 (764)
.+.....+........|.++++||.-++...... .....+.+..++..+.. .+..||
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d-----~~~~~~~l~~l~~~l~~----~g~tii 176 (251)
T 2ehv_A 106 LPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEE-----ERKIREVLLKLNTILLE----MGVTTI 176 (251)
T ss_dssp ------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSS-----GGGHHHHHHHHHHHHHH----HCCEEE
T ss_pred cccccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCC-----HHHHHHHHHHHHHHHHH----CCCeEE
Confidence 1112233344445578999999999887753211 12345556677766642 245677
Q ss_pred ecCCCCCCCC-----ccCCCCCcc-ceEEeec
Q 004267 625 GATNRPDIID-----PALLRPGRL-DQLIYIP 650 (764)
Q Consensus 625 ~aTn~~~~ld-----~allrpgRf-~~~i~~~ 650 (764)
.+|+..+... +.+.. -+ |+++.+.
T Consensus 177 ~vtH~~~~~~~~~~~~~i~~--~~aD~vi~l~ 206 (251)
T 2ehv_A 177 LTTEAPDPQHGKLSRYGIEE--FIARGVIVLD 206 (251)
T ss_dssp EEECCC----CCSSSSSCGG--GGCSEEEEEE
T ss_pred EEECCCCCCcccccccChhh--EeeeEEEEEe
Confidence 7777665542 22222 45 7777774
No 249
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.84 E-value=1e-05 Score=82.22 Aligned_cols=32 Identities=28% Similarity=0.333 Sum_probs=27.7
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 267 (764)
++.+.+++.+.|.||+|+|||||+++|++.+.
T Consensus 26 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 26 DLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34567888999999999999999999998763
No 250
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.83 E-value=2e-05 Score=81.00 Aligned_cols=32 Identities=25% Similarity=0.253 Sum_probs=28.0
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 267 (764)
++.+.+++.+.|.||+|||||||+++|++.+.
T Consensus 40 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 40 NFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 34568899999999999999999999998763
No 251
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.83 E-value=2e-05 Score=79.91 Aligned_cols=31 Identities=19% Similarity=0.310 Sum_probs=27.8
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANET 266 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l 266 (764)
++.+.+++.+.|.||+|||||||+++|++.+
T Consensus 25 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 25 TFSIPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4567889999999999999999999999875
No 252
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.83 E-value=1.7e-05 Score=81.07 Aligned_cols=30 Identities=27% Similarity=0.477 Sum_probs=26.8
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHH
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANE 265 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~ 265 (764)
++.+.+++.+.|.||+|+|||||+++|++.
T Consensus 23 sl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 23 NLVVPKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 345678899999999999999999999996
No 253
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.82 E-value=1.5e-05 Score=82.00 Aligned_cols=32 Identities=25% Similarity=0.351 Sum_probs=28.0
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 267 (764)
++.+.+++.+.|.||+|||||||+++|++.+.
T Consensus 26 sl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 26 SLQARAGDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34567889999999999999999999998764
No 254
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.82 E-value=2.5e-05 Score=85.16 Aligned_cols=116 Identities=16% Similarity=0.206 Sum_probs=67.3
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh---------CCeEEEEechhhhh--------hccc----------------
Q 004267 238 GVKPPKGILLYGPPGSGKTLIARAVANET---------GAFFFCINGPEIMS--------KLAG---------------- 284 (764)
Q Consensus 238 ~i~~~~~vLL~GppGtGKTtLar~la~~l---------~~~~i~v~~~~l~~--------~~~g---------------- 284 (764)
|+.++..++|+||||||||||++.++-.. +...+.+++.+... ...|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~ 253 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY 253 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccC
Confidence 78899999999999999999999776332 23466666543210 0001
Q ss_pred ---hhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHH--HHHHHHHHHHhhcccCCCeEEEEEecCC
Q 004267 285 ---ESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVE--RRIVSQLLTLMDGLKSRAHVIVIGATNR 353 (764)
Q Consensus 285 ---~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~--~~v~~~Ll~~ld~~~~~~~v~vI~atn~ 353 (764)
.....+..+........|.+++||++..+....-...+++. .+...+++..|..+....++.||.+++.
T Consensus 254 ~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv 327 (400)
T 3lda_A 254 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQV 327 (400)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred ChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 00112233334444567999999999888764322112222 2334566666666554445666666664
No 255
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.82 E-value=1.8e-05 Score=84.83 Aligned_cols=78 Identities=29% Similarity=0.421 Sum_probs=50.4
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh---CCeEEEEechhhhh----hccc------------hhHHHHHHHHHHHH
Q 004267 238 GVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMS----KLAG------------ESESNLRKAFEEAE 298 (764)
Q Consensus 238 ~i~~~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~----~~~g------------~~~~~l~~vf~~a~ 298 (764)
|+.++..++|+||||+|||||+..++... +..++.++...... ...| ..+..+..+...+.
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 56788899999999999999999998654 44555565432111 0111 11222222222333
Q ss_pred hcCCeEEEEccccccCC
Q 004267 299 KNAPSIIFIDEIDSIAP 315 (764)
Q Consensus 299 ~~~p~il~iDEid~l~~ 315 (764)
...|.+++||++..+.+
T Consensus 137 ~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 137 SGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTCCSEEEEECGGGCCC
T ss_pred cCCCCEEEEcChHhhcc
Confidence 56799999999999885
No 256
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.81 E-value=5.1e-05 Score=81.36 Aligned_cols=116 Identities=16% Similarity=0.224 Sum_probs=66.2
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh---------CCeEEEEechhh---------hhhc-----------------
Q 004267 238 GVKPPKGILLYGPPGSGKTLIARAVANET---------GAFFFCINGPEI---------MSKL----------------- 282 (764)
Q Consensus 238 ~i~~~~~vLL~GppGtGKTtLar~la~~l---------~~~~i~v~~~~l---------~~~~----------------- 282 (764)
|++++.-++|+||||+|||+|+..++... +...+.++.... ...+
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~ 197 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAY 197 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecC
Confidence 68888999999999999999999999872 445666665431 0000
Q ss_pred cch-hHHHHHHHHHHHHh--cCCeEEEEccccccCCCCCCCchHHHH--HHHHHHHHHhhcccCCCeEEEEEecCC
Q 004267 283 AGE-SESNLRKAFEEAEK--NAPSIIFIDEIDSIAPKREKTHGEVER--RIVSQLLTLMDGLKSRAHVIVIGATNR 353 (764)
Q Consensus 283 ~g~-~~~~l~~vf~~a~~--~~p~il~iDEid~l~~~~~~~~~~~~~--~v~~~Ll~~ld~~~~~~~v~vI~atn~ 353 (764)
..+ ....+..+...... ..+.+|+||.+..+....-...+++.. ..+.+++..|..+....++.||.+.+.
T Consensus 198 ~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~ 273 (343)
T 1v5w_A 198 TSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQM 273 (343)
T ss_dssp STTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred CHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeec
Confidence 000 01112223334444 678999999999887432111122221 123444444444444445556655443
No 257
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.81 E-value=3.6e-05 Score=76.49 Aligned_cols=40 Identities=28% Similarity=0.308 Sum_probs=32.3
Q ss_pred cCCCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEeccc
Q 004267 511 GMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPE 550 (764)
Q Consensus 511 ~~~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~ 550 (764)
|+.+..-++|+||||+|||||++.+|...+.+.+.++..+
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 4566566999999999999999999986667777776554
No 258
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.81 E-value=4.4e-05 Score=81.69 Aligned_cols=116 Identities=20% Similarity=0.284 Sum_probs=69.0
Q ss_pred cCCCCcceeeeCCCCCChhHHHHHHHHHh---CCeeEEEecccchhc----ccC------------cchHHHHHHHHHHh
Q 004267 511 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTM----WFG------------ESEANVREIFDKAR 571 (764)
Q Consensus 511 ~~~~~~gill~GppGtGKT~lak~lA~~~---~~~~i~v~~~~l~~~----~~g------------~se~~i~~~f~~a~ 571 (764)
|+.+..-++|+||||||||||+..++... +...+.+++.+.... .+| ..+..+..+....+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 45555669999999999999999999864 556667776553221 001 11223333333344
Q ss_pred hCCCeEEEEecccchhhcc--CCCCCC-CCcchHHHHHHHHHhhcCCCCCCcEEEEec
Q 004267 572 QSAPCVLFFDELDSIATQR--GSSVGD-AGGAADRVLNQLLTEMDGMSAKKTVFIIGA 626 (764)
Q Consensus 572 ~~~p~iifiDEid~l~~~r--~~~~~~-~~~~~~~~~~~lL~~ld~~~~~~~v~vi~a 626 (764)
...+.++++|.+..+.+.. ....++ ......+.+.++|..|..+....++.||.+
T Consensus 137 ~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~i 194 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFT 194 (356)
T ss_dssp TSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEE
T ss_pred hcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 5778999999999887521 111111 111335677777776666544444555544
No 259
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.81 E-value=2.2e-05 Score=84.33 Aligned_cols=72 Identities=25% Similarity=0.440 Sum_probs=47.5
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhC----CeEEEEech-hhh---------hhccchhHHHHHHHHHHHHhcCCeEE
Q 004267 240 KPPKGILLYGPPGSGKTLIARAVANETG----AFFFCINGP-EIM---------SKLAGESESNLRKAFEEAEKNAPSII 305 (764)
Q Consensus 240 ~~~~~vLL~GppGtGKTtLar~la~~l~----~~~i~v~~~-~l~---------~~~~g~~~~~l~~vf~~a~~~~p~il 305 (764)
.++..++|.||+||||||+++++++.++ ..++.+..+ ++. ....+.....+...+..+..+.|.+|
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~Pdvi 200 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDII 200 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEE
Confidence 4556799999999999999999998763 333333221 110 00111111234557888888999999
Q ss_pred EEcccc
Q 004267 306 FIDEID 311 (764)
Q Consensus 306 ~iDEid 311 (764)
++||+-
T Consensus 201 llDEp~ 206 (356)
T 3jvv_A 201 LVGEMR 206 (356)
T ss_dssp EESCCC
T ss_pred ecCCCC
Confidence 999964
No 260
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.80 E-value=1.7e-05 Score=83.27 Aligned_cols=32 Identities=34% Similarity=0.498 Sum_probs=28.1
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 267 (764)
++.+.+++.+.|+||+|||||||+++|++.+.
T Consensus 74 sl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 74 SFTVMPGQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp EEEECTTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred eEEEcCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 34568899999999999999999999998764
No 261
>1zc1_A Ubiquitin fusion degradation protein 1; UFD1, double-PSI-beta-barrel, protein turnover; NMR {Saccharomyces cerevisiae}
Probab=97.80 E-value=0.00047 Score=66.58 Aligned_cols=142 Identities=17% Similarity=0.277 Sum_probs=102.0
Q ss_pred CcEEEECHHHHhhcC---CCCCCEEEEEeCC-CceEEEEEEcCCCCCCCeEEEcHhHHhhcCcCCCCeEEEEecCCCCCC
Q 004267 41 NSVVGLHPDTMDKLQ---IFRGDTILIKGKK-RKDTICIALADDTCEQPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYG 116 (764)
Q Consensus 41 ~~~v~~~~~~~~~l~---~~~gd~v~i~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~g~~v~v~~~~~~~~~ 116 (764)
-++|.|.|++|++|. +.-.=.-+|+... .+.+.|-|.- -.-+.|.|.++.-+++++++..||.|+|+.+ .+|.+
T Consensus 45 GdKIiLP~SaL~~L~~~~i~~Pm~F~l~n~~~~~~th~GVlE-F~A~EG~v~lP~wmm~~L~l~~gd~V~i~~~-~LPkg 122 (208)
T 1zc1_A 45 GGKIFLPPSALSKLSMLNIRYPMLFKLTANETGRVTHGGVLE-FIAEEGRVYLPQWMMETLGIQPGSLLQISST-DVPLG 122 (208)
T ss_dssp SSEEEECHHHHHHHHHTTCCSSCCEEEECTTTCCEEEEEEEE-ECCSSCEEEECHHHHHHHTCCTTCEEEEEEE-ECCCC
T ss_pred CCeEECCHHHHHHHHHCCCCcCEEEEEEeCCCCCEEEEEEEE-EEcCCCeEEcCHHHHHhcCCCCCCEEEEEEe-EcCCC
Confidence 348999999998775 3333355666543 3456666653 2346799999999999999999999999974 68999
Q ss_pred cEEEeccccCcccCcc--hhhHHHHHHHhhhhcCccccCCcEEEEecCceeEEEEEEEecCCc----eEeeCCCceEEe
Q 004267 117 KRVHILPIDDTIEGVT--GNLFDAFLRPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPGE----YCVVAPDTEIFC 189 (764)
Q Consensus 117 ~~v~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~f~v~~~~p~~----~~~~~~~t~i~~ 189 (764)
+.|.+.|.+..--.++ ..+++..|+. +..++.||+|.+..+.....|.|.+++|.. .+++..+-++.+
T Consensus 123 t~vklqP~~~~Fldi~npKavLE~~LRn-----fstLT~Gd~I~i~~~~~~y~l~V~e~kP~~~~~aV~IidTDleVDf 196 (208)
T 1zc1_A 123 QFVKLEPQSVDFLDISDPKAVLENVLRN-----FSTLTVDDVIEISYNGKTFKIKILEVKPESSSKSICVIETDLVTDF 196 (208)
T ss_dssp SEEEEECCHHHHHTSSCHHHHHHHHHHH-----CSCEESSSEEEEEETTEEEEEEEEEEECSSTTCEECCSSSCSEEEE
T ss_pred CEEEEeECccccccccCHHHHHHHHhhc-----CccccCCCEEEEEeCCEEEEEEEEEEcCCCCCceEEEEeCceEEEe
Confidence 9999999653211121 2344444443 456999999999888888899999999984 566665555544
No 262
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.79 E-value=3e-05 Score=79.75 Aligned_cols=30 Identities=33% Similarity=0.629 Sum_probs=26.8
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANET 266 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l 266 (764)
++.+. ++.+.|.||+|||||||+++|++.+
T Consensus 25 sl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 25 NLEVN-GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEC-SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eEEEC-CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 34567 8899999999999999999999976
No 263
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.79 E-value=1.4e-05 Score=82.30 Aligned_cols=79 Identities=22% Similarity=0.340 Sum_probs=51.3
Q ss_pred hhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCC---eEEEEechhhh--h---------hccchhHHHHHHHHHHHH
Q 004267 233 LFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA---FFFCINGPEIM--S---------KLAGESESNLRKAFEEAE 298 (764)
Q Consensus 233 ~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~---~~i~v~~~~l~--~---------~~~g~~~~~l~~vf~~a~ 298 (764)
.++++.+.++..++|+||+||||||+++++++.+.. --+.+.+..+. . ...+.....++..+..+.
T Consensus 16 vl~~i~i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL 95 (261)
T 2eyu_A 16 KVLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAAL 95 (261)
T ss_dssp HHHHGGGCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHH
T ss_pred HHHHHhhCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHH
Confidence 344444677888999999999999999999987632 12333332110 0 000101123467777888
Q ss_pred hcCCeEEEEcccc
Q 004267 299 KNAPSIIFIDEID 311 (764)
Q Consensus 299 ~~~p~il~iDEid 311 (764)
.+.|.++++||..
T Consensus 96 ~~~p~illlDEp~ 108 (261)
T 2eyu_A 96 REDPDVIFVGEMR 108 (261)
T ss_dssp HHCCSEEEESCCC
T ss_pred hhCCCEEEeCCCC
Confidence 8899999999963
No 264
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.78 E-value=8.3e-06 Score=84.70 Aligned_cols=31 Identities=23% Similarity=0.323 Sum_probs=27.3
Q ss_pred hCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Q 004267 237 IGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (764)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 267 (764)
+.+.+++.+.|.||+|||||||+++|++.+.
T Consensus 42 l~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 42 WQIAKGDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 4567788999999999999999999998764
No 265
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.77 E-value=6.5e-05 Score=80.95 Aligned_cols=115 Identities=21% Similarity=0.377 Sum_probs=66.0
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh---CCeEEEEechhhhhh----ccc-----------hhHHHHHHHHHHH-H
Q 004267 238 GVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSK----LAG-----------ESESNLRKAFEEA-E 298 (764)
Q Consensus 238 ~i~~~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~----~~g-----------~~~~~l~~vf~~a-~ 298 (764)
|++++..++|+||||+|||+|+..++... +..++.++....... ..| .....+...+... .
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 56778899999999999999999887664 456666664321111 000 1122233333332 3
Q ss_pred hcCCeEEEEccccccCCCCCCCc--hH----HHHHHHHHHHHHhhcccCCCeEEEEEecC
Q 004267 299 KNAPSIIFIDEIDSIAPKREKTH--GE----VERRIVSQLLTLMDGLKSRAHVIVIGATN 352 (764)
Q Consensus 299 ~~~p~il~iDEid~l~~~~~~~~--~~----~~~~v~~~Ll~~ld~~~~~~~v~vI~atn 352 (764)
...+.+||||.+..+.+...... ++ ...+.+.+++..|..+....++.||.+.+
T Consensus 150 ~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq 209 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQ 209 (366)
T ss_dssp TTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEE
T ss_pred cCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEe
Confidence 45689999999999985332110 11 22244455555555444455566665443
No 266
>2yuj_A Ubiquitin fusion degradation 1-like; ubiquitin-dependent proteolytic, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.76 E-value=0.00051 Score=65.45 Aligned_cols=143 Identities=17% Similarity=0.258 Sum_probs=101.3
Q ss_pred CCcEEEECHHHHhhcC---CCCCCEEEEEeCC-CceEEEEEEcCCCCCCCeEEEcHhHHhhcCcCCCCeEEEEecCCCCC
Q 004267 40 DNSVVGLHPDTMDKLQ---IFRGDTILIKGKK-RKDTICIALADDTCEQPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKY 115 (764)
Q Consensus 40 ~~~~v~~~~~~~~~l~---~~~gd~v~i~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~g~~v~v~~~~~~~~ 115 (764)
.-++|.|.|+.|++|. +.-.=.-+|+..+ .+.+.|-|.- -.-+.|.|.|+.-++++++++.||.|+|+.+ .+|.
T Consensus 39 ~GdKI~LP~SaL~~L~~~~i~~Pm~F~l~n~~~~r~th~GVlE-FsA~EG~i~lP~wmm~~L~l~~gd~V~v~~~-~LPk 116 (190)
T 2yuj_A 39 KGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMTHCGVLE-FVADEGICYLPHWMMQNLLLEEGGLVQVESV-NLQV 116 (190)
T ss_dssp TTTEEECCHHHHHHHHHTTCCSSCEEEEEETTTTEEEEEEEEE-CCCBTTBEECCSHHHHHHTCCTTEEEEEEEE-CCCC
T ss_pred CCCeEECcHHHHHHHHHCCCCcCeEEEEecCCCCceEEEEEEE-EecCCCeEEeCHHHHHhcCCCCCCEEEEEEe-ecCC
Confidence 4558999999988764 3323355666653 3346665553 3456799999999999999999999999985 7899
Q ss_pred CcEEEeccccCcccCcchhhHHHHHHHhhhhcCccccCCcEEEEecCceeEEEEEEEecCCc-eEeeCCCceE
Q 004267 116 GKRVHILPIDDTIEGVTGNLFDAFLRPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPGE-YCVVAPDTEI 187 (764)
Q Consensus 116 ~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~f~v~~~~p~~-~~~~~~~t~i 187 (764)
++.|.+.|.+..--.+ ....+.|...+. .+-.++.||+|.+..+.....|.|.+++|.. .+++..+-.+
T Consensus 117 gt~vklqP~~~~Fl~i--~npKavLE~~Lr-nfstLT~Gd~I~I~~~~~~y~l~V~e~kP~~aV~IidTDl~v 186 (190)
T 2yuj_A 117 ATYSKFQPQSPDFLDI--TNPKAVLENALR-NFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNV 186 (190)
T ss_dssp CSEEEEEESSHHHHHS--SCHHHHHHHHHT-TCCEECTTCEEEEESSSCEEEEEEEEESSSSSEECSSCCCEE
T ss_pred CcEEEEEECCcccccc--ccHHHHHHHHHh-cCcccccCCEEEEEeCCEEEEEEEEEEcCCCeEEEEeCCEEE
Confidence 9999999975421111 123334444443 2446999999999888788899999999984 4555444444
No 267
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.75 E-value=4.2e-05 Score=77.28 Aligned_cols=78 Identities=13% Similarity=0.169 Sum_probs=51.7
Q ss_pred cCCCCcceeeeCCCCCChhHHHHHHHHH--h-------CCeeEEEecccchh--------cccCc---------------
Q 004267 511 GMSPSKGVLFYGPPGCGKTLLAKAIANE--C-------QANFISVKGPELLT--------MWFGE--------------- 558 (764)
Q Consensus 511 ~~~~~~gill~GppGtGKT~lak~lA~~--~-------~~~~i~v~~~~l~~--------~~~g~--------------- 558 (764)
|+++..-++|+||||+|||+|++.+|.. . +.+.+.+++.+... ..+|.
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 99 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAF 99 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecC
Confidence 4555666999999999999999999984 2 45677777655210 00111
Q ss_pred chH----HHHHHHHHHhhCCCeEEEEecccchhh
Q 004267 559 SEA----NVREIFDKARQSAPCVLFFDELDSIAT 588 (764)
Q Consensus 559 se~----~i~~~f~~a~~~~p~iifiDEid~l~~ 588 (764)
+.. .+..+.+......|.++++||+..+..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~ 133 (243)
T 1n0w_A 100 NTDHQTQLLYQASAMMVESRYALLIVDSATALYR 133 (243)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC
T ss_pred CHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHH
Confidence 111 123344445556789999999998765
No 268
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.75 E-value=3.7e-05 Score=79.29 Aligned_cols=30 Identities=33% Similarity=0.592 Sum_probs=26.9
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHH
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANE 265 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~ 265 (764)
++.+.+++.+.|.||+|||||||++.|++.
T Consensus 40 sl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 40 SLDVHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 345678899999999999999999999996
No 269
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.74 E-value=3.7e-05 Score=81.75 Aligned_cols=115 Identities=16% Similarity=0.183 Sum_probs=65.5
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh---------CCeEEEEechhh---------hhhc------------c---c
Q 004267 238 GVKPPKGILLYGPPGSGKTLIARAVANET---------GAFFFCINGPEI---------MSKL------------A---G 284 (764)
Q Consensus 238 ~i~~~~~vLL~GppGtGKTtLar~la~~l---------~~~~i~v~~~~l---------~~~~------------~---g 284 (764)
|++++..++|+||||+|||+|+..++... +...+.++.... ...+ . .
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~ 182 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAI 182 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCC
Confidence 67888999999999999999999999875 445666665431 0000 0 0
Q ss_pred hhH---HHHHHHHHHHHh-cCCeEEEEccccccCCCCCCCchHHH--HHHHHHHHHHhhcccCCCeEEEEEecC
Q 004267 285 ESE---SNLRKAFEEAEK-NAPSIIFIDEIDSIAPKREKTHGEVE--RRIVSQLLTLMDGLKSRAHVIVIGATN 352 (764)
Q Consensus 285 ~~~---~~l~~vf~~a~~-~~p~il~iDEid~l~~~~~~~~~~~~--~~v~~~Ll~~ld~~~~~~~v~vI~atn 352 (764)
..+ ..+..+...... ..+.+++||.+..+........++.. ...+.+++..+..+....++.||.+.+
T Consensus 183 ~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq 256 (324)
T 2z43_A 183 NTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQ 256 (324)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcc
Confidence 011 122333334444 67899999999988643211111121 123344444444443333445554433
No 270
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.74 E-value=2.8e-05 Score=79.33 Aligned_cols=27 Identities=33% Similarity=0.556 Sum_probs=24.1
Q ss_pred CcceeeeCCCCCChhHHHHHHHHHhCC
Q 004267 515 SKGVLFYGPPGCGKTLLAKAIANECQA 541 (764)
Q Consensus 515 ~~gill~GppGtGKT~lak~lA~~~~~ 541 (764)
..+++||||||||||++|+++|..+..
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 457999999999999999999997654
No 271
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=97.72 E-value=0.00027 Score=76.38 Aligned_cols=120 Identities=26% Similarity=0.462 Sum_probs=71.5
Q ss_pred cccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCe--EEEEechhhhhhcc---
Q 004267 209 DVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGPEIMSKLA--- 283 (764)
Q Consensus 209 ~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~--~i~v~~~~l~~~~~--- 283 (764)
.+.|......++.+.+...- .....++++|++||||+++++++....+.. |+.++|..+.....
T Consensus 130 ~~ig~s~~~~~~~~~~~~~a-----------~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~ 198 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPKIA-----------KSKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESE 198 (368)
T ss_dssp CCCCCSHHHHHHHHHHHHHH-----------TSCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHH
T ss_pred cccccchHHHHHHhhhhhhh-----------ccchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHH
Confidence 35566666666655543210 224569999999999999999998877543 99999976532110
Q ss_pred --chh----H---HHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhccc-----C----CCeE
Q 004267 284 --GES----E---SNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK-----S----RAHV 345 (764)
Q Consensus 284 --g~~----~---~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-----~----~~~v 345 (764)
|.. . ..-...|+.|. ...||+|||+.+.+ .....|+..++.-. . ...+
T Consensus 199 lfg~~~g~~tga~~~~~g~~~~a~---~gtlfldei~~l~~-----------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~ 264 (368)
T 3dzd_A 199 LFGHEKGAFTGALTRKKGKLELAD---QGTLFLDEVGELDQ-----------RVQAKLLRVLETGSFTRLGGNQKIEVDI 264 (368)
T ss_dssp HHEECSCSSSSCCCCEECHHHHTT---TSEEEEETGGGSCH-----------HHHHHHHHHHHHSEECCBTCCCBEECCC
T ss_pred hcCccccccCCcccccCChHhhcC---CCeEEecChhhCCH-----------HHHHHHHHHHHhCCcccCCCCcceeeee
Confidence 000 0 00012344442 35899999998842 23355666664311 1 1246
Q ss_pred EEEEecCC
Q 004267 346 IVIGATNR 353 (764)
Q Consensus 346 ~vI~atn~ 353 (764)
-+|++||.
T Consensus 265 rii~at~~ 272 (368)
T 3dzd_A 265 RVISATNK 272 (368)
T ss_dssp EEEEEESS
T ss_pred EEEEecCC
Confidence 68888885
No 272
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.72 E-value=2.3e-05 Score=84.04 Aligned_cols=78 Identities=18% Similarity=0.247 Sum_probs=51.1
Q ss_pred cCCCCcceeeeCCCCCChhHHHHHHHHHh---CCeeEEEecccchhc----ccC------------cchHHHHHHHHHHh
Q 004267 511 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTM----WFG------------ESEANVREIFDKAR 571 (764)
Q Consensus 511 ~~~~~~gill~GppGtGKT~lak~lA~~~---~~~~i~v~~~~l~~~----~~g------------~se~~i~~~f~~a~ 571 (764)
|+++..-++|+||||+|||+||..++... +...+.++...-... ..| ..+..+..+...++
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 55666669999999999999999998753 455666665432211 112 11222333333444
Q ss_pred hCCCeEEEEecccchhh
Q 004267 572 QSAPCVLFFDELDSIAT 588 (764)
Q Consensus 572 ~~~p~iifiDEid~l~~ 588 (764)
...|.+||+|++..+..
T Consensus 137 ~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 137 SGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTCCSEEEEECGGGCCC
T ss_pred cCCCCEEEEcChHhhcc
Confidence 66789999999999874
No 273
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.70 E-value=0.00024 Score=76.04 Aligned_cols=159 Identities=13% Similarity=0.069 Sum_probs=100.6
Q ss_pred CCcceeeeCCCCCChhHHHHHHHHHh---CC-eeEEEecccchhcccCcchHHHHHHHHHHhh----CCCeEEEEecccc
Q 004267 514 PSKGVLFYGPPGCGKTLLAKAIANEC---QA-NFISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDS 585 (764)
Q Consensus 514 ~~~gill~GppGtGKT~lak~lA~~~---~~-~~i~v~~~~l~~~~~g~se~~i~~~f~~a~~----~~p~iifiDEid~ 585 (764)
....+|||||+|.||++.++.++... +. ++..+. +-+ +..++++++.+.. ....|+++||++.
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~-------~~~--~~~~~~l~~~~~~~plf~~~kvvii~~~~~ 87 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFS-------IDP--NTDWNAIFSLCQAMSLFASRQTLLLLLPEN 87 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEE-------CCT--TCCHHHHHHHHHHHHHCCSCEEEEEECCSS
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEE-------ecC--CCCHHHHHHHhcCcCCccCCeEEEEECCCC
Confidence 34569999999999999999998864 22 221111 111 2345666655543 4467999999987
Q ss_pred -hhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCC-----CCCCCccCCCCCccceEEeecCCCHHHHHH
Q 004267 586 -IATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNR-----PDIIDPALLRPGRLDQLIYIPLPDEDSRHQ 659 (764)
Q Consensus 586 -l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~-----~~~ld~allrpgRf~~~i~~~~p~~~~r~~ 659 (764)
+.. ...+.|+..++..+ .+.++|+++|+. ...+-+++.+ |. .++.|.+++..+...
T Consensus 88 kl~~--------------~~~~aLl~~le~p~-~~~~~il~~~~~~~~~~~~k~~~~i~s--r~-~~~~~~~l~~~~l~~ 149 (343)
T 1jr3_D 88 GPNA--------------AINEQLLTLTGLLH-DDLLLIVRGNKLSKAQENAAWFTALAN--RS-VQVTCQTPEQAQLPR 149 (343)
T ss_dssp CCCT--------------THHHHHHHHHTTCB-TTEEEEEEESCCCTTTTTSHHHHHHTT--TC-EEEEECCCCTTHHHH
T ss_pred CCCh--------------HHHHHHHHHHhcCC-CCeEEEEEcCCCChhhHhhHHHHHHHh--Cc-eEEEeeCCCHHHHHH
Confidence 521 23466777777543 345556565542 2345566665 66 488999999999998
Q ss_pred HHHHHhccCCCCCc-ccHHHHHHHCCCCCHHHHHHHHHHHHH
Q 004267 660 IFKACLRKSPVSKD-VDLRALAKYTQGFSGADITEICQRACK 700 (764)
Q Consensus 660 Il~~~~~~~~~~~~-~~l~~la~~~~g~sg~di~~~~~~a~~ 700 (764)
.++..+++.++.-+ ..+..+++.++| +-+++.+.+...+.
T Consensus 150 ~l~~~~~~~g~~i~~~a~~~l~~~~~g-dl~~~~~elekl~l 190 (343)
T 1jr3_D 150 WVAARAKQLNLELDDAANQVLCYCYEG-NLLALAQALERLSL 190 (343)
T ss_dssp HHHHHHHHTTCEECHHHHHHHHHSSTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhch-HHHHHHHHHHHHHH
Confidence 88888877765422 235566666654 55555555555443
No 274
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.66 E-value=1.5e-05 Score=81.11 Aligned_cols=31 Identities=29% Similarity=0.400 Sum_probs=27.7
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANET 266 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l 266 (764)
++.+.+++.+.|.||+|||||||+++|++.+
T Consensus 22 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 22 SFEAQPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4557889999999999999999999999875
No 275
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.66 E-value=7.5e-05 Score=75.14 Aligned_cols=32 Identities=19% Similarity=0.308 Sum_probs=28.1
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 267 (764)
++.+.+++.+.|.||+|||||||+++|++.+.
T Consensus 28 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 28 NFKIERGQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp EEEEETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 34567889999999999999999999999764
No 276
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.66 E-value=8.9e-05 Score=79.88 Aligned_cols=117 Identities=22% Similarity=0.286 Sum_probs=67.6
Q ss_pred cCCCCcceeeeCCCCCChhHHHHHHHHHh---CCeeEEEecccchhcc----cC------------cchHHHHHHHHHHh
Q 004267 511 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMW----FG------------ESEANVREIFDKAR 571 (764)
Q Consensus 511 ~~~~~~gill~GppGtGKT~lak~lA~~~---~~~~i~v~~~~l~~~~----~g------------~se~~i~~~f~~a~ 571 (764)
|+++..-++|+||||+|||+||..+|... +.+.+.++...-...+ .| ..+..+..+....+
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 56666669999999999999999888753 5566666654322111 11 11222223333344
Q ss_pred hCCCeEEEEecccchhhccCCCC--CCC-CcchHHHHHHHHHhhcCCCCCCcEEEEecC
Q 004267 572 QSAPCVLFFDELDSIATQRGSSV--GDA-GGAADRVLNQLLTEMDGMSAKKTVFIIGAT 627 (764)
Q Consensus 572 ~~~p~iifiDEid~l~~~r~~~~--~~~-~~~~~~~~~~lL~~ld~~~~~~~v~vi~aT 627 (764)
...+.+||+|.+..+.+...... ++. .+...+.+.+++..|..+....++.||++.
T Consensus 150 ~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~n 208 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFIN 208 (366)
T ss_dssp TTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred cCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEE
Confidence 56789999999999875321110 010 012235667777777554444455555553
No 277
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.65 E-value=9.2e-05 Score=79.47 Aligned_cols=78 Identities=22% Similarity=0.416 Sum_probs=51.8
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh---CCeEEEEechhhhh----hccc-----------hhHHHHHHHHHH-HH
Q 004267 238 GVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMS----KLAG-----------ESESNLRKAFEE-AE 298 (764)
Q Consensus 238 ~i~~~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~----~~~g-----------~~~~~l~~vf~~-a~ 298 (764)
|++++..++|+||||+||||||..++... +..++.++...... ...| .....+..++.. ..
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 47788899999999999999999988764 45666676532111 0001 112233334433 23
Q ss_pred hcCCeEEEEccccccCC
Q 004267 299 KNAPSIIFIDEIDSIAP 315 (764)
Q Consensus 299 ~~~p~il~iDEid~l~~ 315 (764)
...+.+++||.+..+.+
T Consensus 139 ~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 139 SGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HTCCSEEEEECGGGCCC
T ss_pred ccCCCEEEEcCHHHhcc
Confidence 56789999999999875
No 278
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.61 E-value=4.7e-05 Score=76.22 Aligned_cols=37 Identities=24% Similarity=0.362 Sum_probs=27.4
Q ss_pred cCCCCcceeeeCCCCCChhHHHHHHHHHh---CCeeEEEe
Q 004267 511 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVK 547 (764)
Q Consensus 511 ~~~~~~gill~GppGtGKT~lak~lA~~~---~~~~i~v~ 547 (764)
|+.+..-++|+||||+|||||++.++... +.+.+.+.
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 45555569999999999999999999653 34444443
No 279
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.59 E-value=0.00018 Score=68.84 Aligned_cols=37 Identities=19% Similarity=0.292 Sum_probs=31.4
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhh
Q 004267 242 PKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEI 278 (764)
Q Consensus 242 ~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l 278 (764)
+..|+|+|+|||||||+++.|+..++..++.++...+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~ 39 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSL 39 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchH
Confidence 4579999999999999999999999988877665433
No 280
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.59 E-value=3.8e-05 Score=76.94 Aligned_cols=79 Identities=23% Similarity=0.230 Sum_probs=49.6
Q ss_pred cCCCCcceeeeCCCCCChhHHHHHHHHHh---------CCeeEEEecccchh--------cccCc---------------
Q 004267 511 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---------QANFISVKGPELLT--------MWFGE--------------- 558 (764)
Q Consensus 511 ~~~~~~gill~GppGtGKT~lak~lA~~~---------~~~~i~v~~~~l~~--------~~~g~--------------- 558 (764)
|+.+..-+.|.||||||||||++.++... +...+.+++.+... ...+-
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 100 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAF 100 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTSCHHHHHHTEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHHHHcCCCHHHHhhcEEEEecC
Confidence 45555569999999999999999999853 33466666644211 00000
Q ss_pred c----hHHHHHHHHHHh-----hCCCeEEEEecccchhhc
Q 004267 559 S----EANVREIFDKAR-----QSAPCVLFFDELDSIATQ 589 (764)
Q Consensus 559 s----e~~i~~~f~~a~-----~~~p~iifiDEid~l~~~ 589 (764)
. ...+..+..... ...|.++++||.......
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~ 140 (231)
T 4a74_A 101 NSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRS 140 (231)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhcc
Confidence 0 011233333344 567899999999887654
No 281
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.58 E-value=0.00014 Score=75.72 Aligned_cols=78 Identities=21% Similarity=0.327 Sum_probs=49.6
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh-----CCeEEEEechhhhh----hccc-----------hhHHHH-HHHHHH
Q 004267 238 GVKPPKGILLYGPPGSGKTLIARAVANET-----GAFFFCINGPEIMS----KLAG-----------ESESNL-RKAFEE 296 (764)
Q Consensus 238 ~i~~~~~vLL~GppGtGKTtLar~la~~l-----~~~~i~v~~~~l~~----~~~g-----------~~~~~l-~~vf~~ 296 (764)
|+.++ .++|+||||||||||+..++... +...+.+++.+-.. ...| .....+ -.+.+.
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 56777 79999999999999987765443 56677777643211 0001 111222 222222
Q ss_pred ---HHhcCCeEEEEccccccCCC
Q 004267 297 ---AEKNAPSIIFIDEIDSIAPK 316 (764)
Q Consensus 297 ---a~~~~p~il~iDEid~l~~~ 316 (764)
.....|.+++||-+..+.+.
T Consensus 104 l~~i~~~~~~lvVIDSI~aL~~~ 126 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNLASK 126 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTCBCC
T ss_pred HHHhhccCceEEEEecccccccc
Confidence 24567999999999999864
No 282
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.55 E-value=4.7e-05 Score=86.40 Aligned_cols=109 Identities=12% Similarity=0.090 Sum_probs=66.8
Q ss_pred hCCCCCceEEEECCCCCCHHHHHHHHHHHhCCe----------EEEEec----------hhhhh----------------
Q 004267 237 IGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------FFCING----------PEIMS---------------- 280 (764)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~----------~i~v~~----------~~l~~---------------- 280 (764)
+.+.+++.+.|.||+|||||||+++|++.+... +-.+.. .+...
T Consensus 289 ~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~ 368 (538)
T 3ozx_A 289 GEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEE 368 (538)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHH
T ss_pred ceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHHHHHH
Confidence 345788999999999999999999999875311 000000 00000
Q ss_pred ------------hccc--hhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEE
Q 004267 281 ------------KLAG--ESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVI 346 (764)
Q Consensus 281 ------------~~~g--~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~ 346 (764)
...+ ...++-+-.+..+....|.+|++|| +.+.++......+++++..+....+..
T Consensus 369 ~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDE----------PT~gLD~~~~~~i~~~l~~l~~~~g~t 438 (538)
T 3ozx_A 369 VTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQ----------PSSYLDVEERYIVAKAIKRVTRERKAV 438 (538)
T ss_dssp TTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEES----------TTTTCCHHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC----------CccCCCHHHHHHHHHHHHHHHHhCCCE
Confidence 0000 0123446677788889999999999 444445555566666666654333445
Q ss_pred EEEecCCCC
Q 004267 347 VIGATNRPN 355 (764)
Q Consensus 347 vI~atn~~~ 355 (764)
||.+|++.+
T Consensus 439 vi~vsHdl~ 447 (538)
T 3ozx_A 439 TFIIDHDLS 447 (538)
T ss_dssp EEEECSCHH
T ss_pred EEEEeCCHH
Confidence 556777643
No 283
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.54 E-value=9.6e-05 Score=85.32 Aligned_cols=32 Identities=34% Similarity=0.538 Sum_probs=28.6
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 267 (764)
++.+++++.+.|+||+|||||||+++|++...
T Consensus 375 sl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~ 406 (598)
T 3qf4_B 375 TFHIKPGQKVALVGPTGSGKTTIVNLLMRFYD 406 (598)
T ss_dssp EEECCTTCEEEEECCTTSSTTHHHHHHTTSSC
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhcCcC
Confidence 45678999999999999999999999998764
No 284
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=97.53 E-value=8.8e-05 Score=85.32 Aligned_cols=32 Identities=13% Similarity=0.312 Sum_probs=28.5
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 267 (764)
++.+++++.+.|+||+|+|||||+++|++...
T Consensus 361 sl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~ 392 (578)
T 4a82_A 361 NLSIEKGETVAFVGMSGGGKSTLINLIPRFYD 392 (578)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred EEEECCCCEEEEECCCCChHHHHHHHHhcCCC
Confidence 45678899999999999999999999998764
No 285
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.51 E-value=0.00017 Score=75.48 Aligned_cols=30 Identities=23% Similarity=0.332 Sum_probs=27.6
Q ss_pred hCCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 004267 237 IGVKPPKGILLYGPPGSGKTLIARAVANET 266 (764)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtLar~la~~l 266 (764)
+++.++..++|.||||+|||||++.+++.+
T Consensus 30 ~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 30 LGARGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp CSBCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 578899999999999999999999999875
No 286
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=97.50 E-value=3.8e-05 Score=88.49 Aligned_cols=32 Identities=31% Similarity=0.386 Sum_probs=28.2
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 267 (764)
++.+++++.+.|+||+|||||||++.|++...
T Consensus 363 ~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~ 394 (582)
T 3b5x_A 363 SFSIPQGKTVALVGRSGSGKSTIANLFTRFYD 394 (582)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45678899999999999999999999998753
No 287
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.50 E-value=7.3e-05 Score=73.38 Aligned_cols=37 Identities=27% Similarity=0.346 Sum_probs=29.7
Q ss_pred hCCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEE
Q 004267 237 IGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCI 273 (764)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v 273 (764)
+.+.+++.|+|+|||||||||+++.|++.++..++..
T Consensus 20 ~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~ 56 (199)
T 3vaa_A 20 FQSNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDL 56 (199)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred EecCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 3456678899999999999999999999999877543
No 288
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.49 E-value=0.00018 Score=74.70 Aligned_cols=29 Identities=24% Similarity=0.335 Sum_probs=26.0
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 004267 238 GVKPPKGILLYGPPGSGKTLIARAVANET 266 (764)
Q Consensus 238 ~i~~~~~vLL~GppGtGKTtLar~la~~l 266 (764)
|+.++..++|+||||||||||++.++..+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 67788899999999999999999998754
No 289
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=97.46 E-value=0.00015 Score=83.40 Aligned_cols=32 Identities=28% Similarity=0.406 Sum_probs=28.5
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 267 (764)
++.+++++.+.|+||+|||||||++.|++...
T Consensus 363 ~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~ 394 (582)
T 3b60_A 363 NLKIPAGKTVALVGRSGSGKSTIASLITRFYD 394 (582)
T ss_dssp EEEECTTCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhhccC
Confidence 45678899999999999999999999998764
No 290
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.46 E-value=1.6e-05 Score=84.98 Aligned_cols=45 Identities=31% Similarity=0.533 Sum_probs=31.8
Q ss_pred hhhhccCCCCcc--eeeeCCCCCChhHHHHHHHHHhC--CeeEEEeccc
Q 004267 506 KFEKFGMSPSKG--VLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPE 550 (764)
Q Consensus 506 ~~~~~~~~~~~g--ill~GppGtGKT~lak~lA~~~~--~~~i~v~~~~ 550 (764)
.++.+++....| +.|.||+|||||||.+++|+... ..-|.+++.+
T Consensus 19 ~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~ 67 (359)
T 3fvq_A 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKT 67 (359)
T ss_dssp EEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEE
T ss_pred EEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEE
Confidence 344445555555 88999999999999999999643 3455555543
No 291
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.45 E-value=3.1e-05 Score=82.49 Aligned_cols=74 Identities=19% Similarity=0.260 Sum_probs=52.1
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhCC--eEEEEechhhhh-----h---ccchhHHHHHHHHHHHHhcCCeEEEEc
Q 004267 239 VKPPKGILLYGPPGSGKTLIARAVANETGA--FFFCINGPEIMS-----K---LAGESESNLRKAFEEAEKNAPSIIFID 308 (764)
Q Consensus 239 i~~~~~vLL~GppGtGKTtLar~la~~l~~--~~i~v~~~~l~~-----~---~~g~~~~~l~~vf~~a~~~~p~il~iD 308 (764)
+.+++.++|.||+|||||||+++|++.+.. ..+.+++..... . +........+..+..+....|.++++|
T Consensus 168 i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilild 247 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILG 247 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEEC
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEc
Confidence 355788999999999999999999998753 345666543211 0 110022355677778888999999999
Q ss_pred cccc
Q 004267 309 EIDS 312 (764)
Q Consensus 309 Eid~ 312 (764)
|...
T Consensus 248 E~~~ 251 (330)
T 2pt7_A 248 ELRS 251 (330)
T ss_dssp CCCS
T ss_pred CCCh
Confidence 9653
No 292
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.45 E-value=6.7e-05 Score=72.85 Aligned_cols=41 Identities=34% Similarity=0.402 Sum_probs=33.8
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhh
Q 004267 238 GVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEI 278 (764)
Q Consensus 238 ~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l 278 (764)
++.++..++|.|||||||||+++.|++..+...+.+++.++
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 35678889999999999999999999987666677776554
No 293
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.44 E-value=0.00011 Score=78.92 Aligned_cols=117 Identities=23% Similarity=0.351 Sum_probs=65.7
Q ss_pred cCCCCcceeeeCCCCCChhHHHHHHHHHh---CCeeEEEecccchh----cccCc-----------chHHHHHHHH-HHh
Q 004267 511 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLT----MWFGE-----------SEANVREIFD-KAR 571 (764)
Q Consensus 511 ~~~~~~gill~GppGtGKT~lak~lA~~~---~~~~i~v~~~~l~~----~~~g~-----------se~~i~~~f~-~a~ 571 (764)
|+++..-++|+||||+|||+||..+|... +.+.+.++..+... ...|. +...+..+.+ ..+
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 56666679999999999999999988753 55677777643221 01111 1222333333 234
Q ss_pred hCCCeEEEEecccchhhccCCC--CCCC-CcchHHHHHHHHHhhcCCCCCCcEEEEecC
Q 004267 572 QSAPCVLFFDELDSIATQRGSS--VGDA-GGAADRVLNQLLTEMDGMSAKKTVFIIGAT 627 (764)
Q Consensus 572 ~~~p~iifiDEid~l~~~r~~~--~~~~-~~~~~~~~~~lL~~ld~~~~~~~v~vi~aT 627 (764)
...+.+|++|.+..+....... .++. .+...+.+.+++..|..+....++.||++.
T Consensus 139 ~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~n 197 (356)
T 1u94_A 139 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 197 (356)
T ss_dssp HTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred ccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 5678999999999987522100 0010 012224556666665544333345555543
No 294
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=97.41 E-value=0.00018 Score=85.99 Aligned_cols=29 Identities=21% Similarity=0.321 Sum_probs=24.6
Q ss_pred hCCCCCceEEEECCCCCCHHHHHHHHHHH
Q 004267 237 IGVKPPKGILLYGPPGSGKTLIARAVANE 265 (764)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtLar~la~~ 265 (764)
+.+.+++.++|+||+|+||||++|.++..
T Consensus 668 l~~~~g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 668 LSEDSERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp ECTTSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred ccCCCCeEEEEECCCCCchHHHHHHHHHH
Confidence 34566788999999999999999998754
No 295
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.41 E-value=0.0001 Score=79.85 Aligned_cols=81 Identities=25% Similarity=0.438 Sum_probs=52.5
Q ss_pred hhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHhC----CeEEEEech-hh--------hhh-ccchhHHHHHHHHHH
Q 004267 231 PQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG----AFFFCINGP-EI--------MSK-LAGESESNLRKAFEE 296 (764)
Q Consensus 231 ~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~----~~~i~v~~~-~l--------~~~-~~g~~~~~l~~vf~~ 296 (764)
|..++++.+.++..++|+||+||||||++++|++.+. ..++.+..+ +. +.. ..|.....+...+..
T Consensus 125 ~~~l~~l~~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~ 204 (372)
T 2ewv_A 125 PDKVLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRA 204 (372)
T ss_dssp CSSHHHHTTSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHH
T ss_pred CHHHHHHhhcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHH
Confidence 3455566677888899999999999999999998763 333333321 10 000 001011233556677
Q ss_pred HHhcCCeEEEEcccc
Q 004267 297 AEKNAPSIIFIDEID 311 (764)
Q Consensus 297 a~~~~p~il~iDEid 311 (764)
+....|.+|++||+-
T Consensus 205 ~L~~~pd~illdE~~ 219 (372)
T 2ewv_A 205 ALREDPDVIFVGEMR 219 (372)
T ss_dssp HTTSCCSEEEESCCC
T ss_pred HhhhCcCEEEECCCC
Confidence 777899999999964
No 296
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.41 E-value=6.9e-05 Score=77.19 Aligned_cols=44 Identities=20% Similarity=0.351 Sum_probs=30.7
Q ss_pred hhhhccCCCCcc--eeeeCCCCCChhHHHHHHHHHhC--CeeEEEecc
Q 004267 506 KFEKFGMSPSKG--VLFYGPPGCGKTLLAKAIANECQ--ANFISVKGP 549 (764)
Q Consensus 506 ~~~~~~~~~~~g--ill~GppGtGKT~lak~lA~~~~--~~~i~v~~~ 549 (764)
.++.+++....| +.|.||||+|||||++++++... ..-+.+++.
T Consensus 26 vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~ 73 (266)
T 4g1u_C 26 LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQ 73 (266)
T ss_dssp EEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTE
T ss_pred EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCE
Confidence 344444444444 89999999999999999999642 344555443
No 297
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=97.40 E-value=7.7e-05 Score=81.58 Aligned_cols=118 Identities=19% Similarity=0.124 Sum_probs=66.4
Q ss_pred eEEEECCCCCCHHHHHHHH-HHHhCCeEEEEech-----hhhhhccch--hHHHHHHHHHHHHhcCCeEEEEccccccCC
Q 004267 244 GILLYGPPGSGKTLIARAV-ANETGAFFFCINGP-----EIMSKLAGE--SESNLRKAFEEAEKNAPSIIFIDEIDSIAP 315 (764)
Q Consensus 244 ~vLL~GppGtGKTtLar~l-a~~l~~~~i~v~~~-----~l~~~~~g~--~~~~l~~vf~~a~~~~p~il~iDEid~l~~ 315 (764)
+|||.|+||| ||+|++++ ++.++...+ +.+. .+.....+. ..-.-+.+ ..| ...++|+||++.+-+
T Consensus 241 hVLL~G~PGt-KS~Lar~i~~~i~pR~~f-t~g~~ss~~gLt~s~r~~tG~~~~~G~l-~LA---dgGvl~lDEIn~~~~ 314 (506)
T 3f8t_A 241 HVLLAGYPVV-CSEILHHVLDHLAPRGVY-VDLRRTELTDLTAVLKEDRGWALRAGAA-VLA---DGGILAVDHLEGAPE 314 (506)
T ss_dssp CEEEESCHHH-HHHHHHHHHHHTCSSEEE-EEGGGCCHHHHSEEEEESSSEEEEECHH-HHT---TTSEEEEECCTTCCH
T ss_pred eEEEECCCCh-HHHHHHHHHHHhCCCeEE-ecCCCCCccCceEEEEcCCCcccCCCee-EEc---CCCeeehHhhhhCCH
Confidence 7999999999 99999999 776654433 2221 111110000 00000111 112 235999999987642
Q ss_pred CCCCCchHHHHHHHHHHHHHhhcc-------cCCCeEEEEEecCCCC-----------CCChhhhccCCcceEEE-ecCC
Q 004267 316 KREKTHGEVERRIVSQLLTLMDGL-------KSRAHVIVIGATNRPN-----------SIDPALRRFGRFDREID-IGVP 376 (764)
Q Consensus 316 ~~~~~~~~~~~~v~~~Ll~~ld~~-------~~~~~v~vI~atn~~~-----------~ld~al~r~~rf~~~i~-i~~p 376 (764)
.....|++.|+.- .-..++.||||+|+.. .+++++.. |||-.+. ++.|
T Consensus 315 -----------~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~p 381 (506)
T 3f8t_A 315 -----------PHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGEQWPSDPPIARIDLDQDFLS--HFDLIAFLGVDP 381 (506)
T ss_dssp -----------HHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC--CCSCGGGGCCSCHHHHT--TCSEEEETTC--
T ss_pred -----------HHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcccccCCCCCccccCCChHHhh--heeeEEEecCCC
Confidence 3445666666531 1234688999999865 67777776 8976543 4556
Q ss_pred ChHH
Q 004267 377 DEVG 380 (764)
Q Consensus 377 ~~~~ 380 (764)
+.+.
T Consensus 382 d~e~ 385 (506)
T 3f8t_A 382 RPGE 385 (506)
T ss_dssp ----
T ss_pred ChhH
Confidence 5543
No 298
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.40 E-value=0.00019 Score=82.55 Aligned_cols=32 Identities=25% Similarity=0.427 Sum_probs=28.5
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 267 (764)
++.+++++.+.|+||+|||||||+++|++.+.
T Consensus 363 sl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~ 394 (587)
T 3qf4_A 363 NFSVKPGSLVAVLGETGSGKSTLMNLIPRLID 394 (587)
T ss_dssp EEEECTTCEEEEECSSSSSHHHHHHTTTTSSC
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 45678899999999999999999999998764
No 299
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.39 E-value=0.00017 Score=74.07 Aligned_cols=79 Identities=19% Similarity=0.253 Sum_probs=49.6
Q ss_pred hhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhC---CeeEEEecccch-----------hcccCcchHHHHHHHHHHh
Q 004267 506 KFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPELL-----------TMWFGESEANVREIFDKAR 571 (764)
Q Consensus 506 ~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~---~~~i~v~~~~l~-----------~~~~g~se~~i~~~f~~a~ 571 (764)
.++.+.+.+..-++|.||+|+||||+++++++... ..-+.+.+.++- ...+|......+..+..+-
T Consensus 16 vl~~i~i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL 95 (261)
T 2eyu_A 16 KVLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAAL 95 (261)
T ss_dssp HHHHGGGCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHH
T ss_pred HHHHHhhCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHH
Confidence 44444544444599999999999999999999652 334444432220 0011212234566666666
Q ss_pred hCCCeEEEEeccc
Q 004267 572 QSAPCVLFFDELD 584 (764)
Q Consensus 572 ~~~p~iifiDEid 584 (764)
...|.++++||.-
T Consensus 96 ~~~p~illlDEp~ 108 (261)
T 2eyu_A 96 REDPDVIFVGEMR 108 (261)
T ss_dssp HHCCSEEEESCCC
T ss_pred hhCCCEEEeCCCC
Confidence 6689999999973
No 300
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.37 E-value=0.00016 Score=77.49 Aligned_cols=41 Identities=27% Similarity=0.310 Sum_probs=31.7
Q ss_pred ccCCCCcceeeeCCCCCChhHHHHHHHHHhC---------CeeEEEeccc
Q 004267 510 FGMSPSKGVLFYGPPGCGKTLLAKAIANECQ---------ANFISVKGPE 550 (764)
Q Consensus 510 ~~~~~~~gill~GppGtGKT~lak~lA~~~~---------~~~i~v~~~~ 550 (764)
.|+++..-+.|+||||+|||||++.++.... ...+.+++.+
T Consensus 126 ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 126 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 3555556699999999999999999999762 3447777654
No 301
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.36 E-value=0.00025 Score=75.85 Aligned_cols=115 Identities=18% Similarity=0.206 Sum_probs=66.0
Q ss_pred cCCCCcceeeeCCCCCChhHHHHHHHHHh---------CCeeEEEecccchh--------cccCc---------------
Q 004267 511 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---------QANFISVKGPELLT--------MWFGE--------------- 558 (764)
Q Consensus 511 ~~~~~~gill~GppGtGKT~lak~lA~~~---------~~~~i~v~~~~l~~--------~~~g~--------------- 558 (764)
|+++..-++|+||||+|||+||..+|... +.+.+.++....+. ...|.
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~ 197 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAY 197 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecC
Confidence 56655569999999999999999999863 44666676544211 00111
Q ss_pred -ch---HHHHHHHHHHhh--CCCeEEEEecccchhhccCCCCCCCCcchH--HHHHHHHHhhcCCCCCCcEEEEecCC
Q 004267 559 -SE---ANVREIFDKARQ--SAPCVLFFDELDSIATQRGSSVGDAGGAAD--RVLNQLLTEMDGMSAKKTVFIIGATN 628 (764)
Q Consensus 559 -se---~~i~~~f~~a~~--~~p~iifiDEid~l~~~r~~~~~~~~~~~~--~~~~~lL~~ld~~~~~~~v~vi~aTn 628 (764)
.+ ..+..+....+. ..+.+|++|.+..+....-.+. +...+ ..+.+++..|..+....++.||.++.
T Consensus 198 ~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~---g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq 272 (343)
T 1v5w_A 198 TSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGR---GELAERQQKLAQMLSRLQKISEEYNVAVFVTNQ 272 (343)
T ss_dssp STTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGG---GCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred CHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhccc---ccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEee
Confidence 11 112233344555 6789999999999875321110 11222 23566665555443334455555543
No 302
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.35 E-value=0.0002 Score=74.57 Aligned_cols=32 Identities=19% Similarity=0.308 Sum_probs=28.2
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 267 (764)
++.+.+++.+.|.||+|||||||+++|++.+.
T Consensus 58 sl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~ 89 (290)
T 2bbs_A 58 NFKIERGQLLAVAGSTGAGKTSLLMMIMGELE 89 (290)
T ss_dssp EEEECTTCEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 45578889999999999999999999998763
No 303
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.34 E-value=0.00013 Score=77.43 Aligned_cols=114 Identities=16% Similarity=0.218 Sum_probs=67.3
Q ss_pred cCCCCcceeeeCCCCCChhHHHHHHHHHh---------CCeeEEEecccchh--------cccCc---------------
Q 004267 511 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---------QANFISVKGPELLT--------MWFGE--------------- 558 (764)
Q Consensus 511 ~~~~~~gill~GppGtGKT~lak~lA~~~---------~~~~i~v~~~~l~~--------~~~g~--------------- 558 (764)
|+++..-++|+||||+|||++|..+|... +.+.+.++....++ ...|.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~ 182 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAI 182 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCC
Confidence 56666669999999999999999999864 45667776654210 00111
Q ss_pred -ch---HHHHHHHHHHhh-CCCeEEEEecccchhhccCCCCCCCCcchH--HHHHHHHHhhcCCCCCCcEEEEecC
Q 004267 559 -SE---ANVREIFDKARQ-SAPCVLFFDELDSIATQRGSSVGDAGGAAD--RVLNQLLTEMDGMSAKKTVFIIGAT 627 (764)
Q Consensus 559 -se---~~i~~~f~~a~~-~~p~iifiDEid~l~~~r~~~~~~~~~~~~--~~~~~lL~~ld~~~~~~~v~vi~aT 627 (764)
.+ ..+..+....+. ..+.+|++|.+..+......+. +...+ ..+.+++..|..+....++.||++.
T Consensus 183 ~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~---g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~n 255 (324)
T 2z43_A 183 NTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGR---ENLAVRQQKLNKHLHQLTRLAEVYDIAVIITN 255 (324)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTT---TSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCc---ccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEc
Confidence 11 123344444555 6789999999999875321110 11222 2466666666554333345555543
No 304
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.33 E-value=0.0025 Score=73.38 Aligned_cols=46 Identities=17% Similarity=0.198 Sum_probs=36.7
Q ss_pred ccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHH
Q 004267 208 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVAN 264 (764)
Q Consensus 208 ~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~ 264 (764)
..+.|-+..+++|.+.+... -...+.|+|+||+|+||||||+.++.
T Consensus 124 ~~~vGR~~~l~~L~~~L~~~-----------~~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 124 VVFVTRKKLVNAIQQKLSKL-----------KGEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp SSCCCCHHHHHHHHHHHTTS-----------TTSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CeecccHHHHHHHHHHHhcc-----------cCCCceEEEEcCCCCCHHHHHHHHHh
Confidence 45889999999998887531 12356799999999999999998863
No 305
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.32 E-value=0.00023 Score=75.49 Aligned_cols=28 Identities=29% Similarity=0.304 Sum_probs=25.7
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHH
Q 004267 238 GVKPPKGILLYGPPGSGKTLIARAVANE 265 (764)
Q Consensus 238 ~i~~~~~vLL~GppGtGKTtLar~la~~ 265 (764)
|++++.-++|+||||+|||+|+..++..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 6788889999999999999999999875
No 306
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.30 E-value=0.0016 Score=65.56 Aligned_cols=38 Identities=26% Similarity=0.398 Sum_probs=29.3
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh---CCeEEEEec
Q 004267 238 GVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCING 275 (764)
Q Consensus 238 ~i~~~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~ 275 (764)
|+.++..++|+||||+|||||+..++... +...+.++.
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 67888999999999999999988776543 444555543
No 307
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.29 E-value=0.00037 Score=66.62 Aligned_cols=34 Identities=9% Similarity=0.261 Sum_probs=29.8
Q ss_pred cceeeeCCCCCChhHHHHHHHHHhCCeeEEEecc
Q 004267 516 KGVLFYGPPGCGKTLLAKAIANECQANFISVKGP 549 (764)
Q Consensus 516 ~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~ 549 (764)
.-++|.|+||+||||++++|+..++.+|+.++..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D 37 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVD 37 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccc
Confidence 3489999999999999999999999888876653
No 308
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.27 E-value=0.00049 Score=71.68 Aligned_cols=115 Identities=14% Similarity=0.246 Sum_probs=64.6
Q ss_pred cCCCCcceeeeCCCCCChhHHHHHHHHHh-----CCeeEEEecccchh----cccCcc--------hHHHHHH----HHH
Q 004267 511 GMSPSKGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLT----MWFGES--------EANVREI----FDK 569 (764)
Q Consensus 511 ~~~~~~gill~GppGtGKT~lak~lA~~~-----~~~~i~v~~~~l~~----~~~g~s--------e~~i~~~----f~~ 569 (764)
|+.+. -++++||||+|||+|+-.++... +...+.+++.+-+. .-.|-. +....++ .+.
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 45555 58999999999999988776543 56677787654321 111110 1112222 222
Q ss_pred ---HhhCCCeEEEEecccchhhccCCC--CCCC-Cc--chHHHHHHHHHhhcCCCCCCcEEEEec
Q 004267 570 ---ARQSAPCVLFFDELDSIATQRGSS--VGDA-GG--AADRVLNQLLTEMDGMSAKKTVFIIGA 626 (764)
Q Consensus 570 ---a~~~~p~iifiDEid~l~~~r~~~--~~~~-~~--~~~~~~~~lL~~ld~~~~~~~v~vi~a 626 (764)
.+...|.++++|-|..+.+..... .++. .+ ...|.++++|..|-++....++.+|.+
T Consensus 104 l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~t 168 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAI 168 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEE
Confidence 356689999999999997532111 0110 01 345677777776654444444455443
No 309
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.27 E-value=0.00017 Score=77.63 Aligned_cols=45 Identities=27% Similarity=0.479 Sum_probs=31.5
Q ss_pred hhhhccCCCCcc--eeeeCCCCCChhHHHHHHHHHhC--CeeEEEeccc
Q 004267 506 KFEKFGMSPSKG--VLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPE 550 (764)
Q Consensus 506 ~~~~~~~~~~~g--ill~GppGtGKT~lak~lA~~~~--~~~i~v~~~~ 550 (764)
.++.+++....| +.|.||||||||||.+++|+... ..-|.+++.+
T Consensus 18 ~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~ 66 (381)
T 3rlf_A 18 VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKR 66 (381)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEE
T ss_pred EEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEE
Confidence 344445555555 88999999999999999999653 3445555443
No 310
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.27 E-value=0.00018 Score=78.32 Aligned_cols=116 Identities=13% Similarity=0.198 Sum_probs=64.5
Q ss_pred cCCCCcceeeeCCCCCChhHHHHHHHHHh---------CCeeEEEecccchh--------cccCcc--------------
Q 004267 511 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---------QANFISVKGPELLT--------MWFGES-------------- 559 (764)
Q Consensus 511 ~~~~~~gill~GppGtGKT~lak~lA~~~---------~~~~i~v~~~~l~~--------~~~g~s-------------- 559 (764)
|+.+..-++|+||||||||||++.++-.. +...+.+++.+.+. .-+|-.
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~ 253 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY 253 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccC
Confidence 56666669999999999999999776432 34477777654211 001110
Q ss_pred -----hHHHHHHHHHHhhCCCeEEEEecccchhhccCCCCCCCCcch--HHHHHHHHHhhcCCCCCCcEEEEecCCC
Q 004267 560 -----EANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAA--DRVLNQLLTEMDGMSAKKTVFIIGATNR 629 (764)
Q Consensus 560 -----e~~i~~~f~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~--~~~~~~lL~~ld~~~~~~~v~vi~aTn~ 629 (764)
...+..+........|.++++|++-.+....-.+. ++.. .+.+.+++..|..+....++.||+++..
T Consensus 254 ~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~---g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv 327 (400)
T 3lda_A 254 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGR---GELSARQMHLAKFMRALQRLADQFGVAVVVTNQV 327 (400)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC---------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred ChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCc---cchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 11222333444456789999999988765321110 1112 2344555555554433335566666654
No 311
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.24 E-value=0.00055 Score=69.86 Aligned_cols=40 Identities=38% Similarity=0.489 Sum_probs=33.9
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhh
Q 004267 239 VKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEI 278 (764)
Q Consensus 239 i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l 278 (764)
...+..|+|.|+|||||||+++.|+..++..++.+++..+
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 4557789999999999999999999999866677777655
No 312
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.23 E-value=0.00014 Score=70.50 Aligned_cols=39 Identities=28% Similarity=0.390 Sum_probs=32.6
Q ss_pred CCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccc
Q 004267 513 SPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 551 (764)
Q Consensus 513 ~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l 551 (764)
..+.-++|.||||+||||+++++++..+.+.+.+++.++
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 334458999999999999999999988888888887654
No 313
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.23 E-value=0.00021 Score=68.00 Aligned_cols=30 Identities=37% Similarity=0.701 Sum_probs=26.5
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCeEE
Q 004267 242 PKGILLYGPPGSGKTLIARAVANETGAFFF 271 (764)
Q Consensus 242 ~~~vLL~GppGtGKTtLar~la~~l~~~~i 271 (764)
+..|+|+|||||||||+++.|++.++..++
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~i 33 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFY 33 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 457999999999999999999999987544
No 314
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.22 E-value=0.00016 Score=74.78 Aligned_cols=45 Identities=18% Similarity=0.276 Sum_probs=31.4
Q ss_pred hhhhccCCCCcc--eeeeCCCCCChhHHHHHHHHHhC--CeeEEEeccc
Q 004267 506 KFEKFGMSPSKG--VLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPE 550 (764)
Q Consensus 506 ~~~~~~~~~~~g--ill~GppGtGKT~lak~lA~~~~--~~~i~v~~~~ 550 (764)
.++.+++...+| +.|.||||+|||||++++++... ..-+.+++.+
T Consensus 23 ~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~ 71 (275)
T 3gfo_A 23 ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKP 71 (275)
T ss_dssp EEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEE
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEE
Confidence 344445555455 89999999999999999999653 3345555543
No 315
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.19 E-value=0.00018 Score=70.59 Aligned_cols=33 Identities=33% Similarity=0.479 Sum_probs=28.7
Q ss_pred CCcceeeeCCCCCChhHHHHHHHHHhCCeeEEE
Q 004267 514 PSKGVLFYGPPGCGKTLLAKAIANECQANFISV 546 (764)
Q Consensus 514 ~~~gill~GppGtGKT~lak~lA~~~~~~~i~v 546 (764)
+...++|.|||||||||+++++|..++.+++..
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~ 56 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDL 56 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 345699999999999999999999999888644
No 316
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.18 E-value=0.00027 Score=68.15 Aligned_cols=32 Identities=28% Similarity=0.362 Sum_probs=28.4
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCeEEEE
Q 004267 242 PKGILLYGPPGSGKTLIARAVANETGAFFFCI 273 (764)
Q Consensus 242 ~~~vLL~GppGtGKTtLar~la~~l~~~~i~v 273 (764)
+..|+|+|||||||||+++.||..++..++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~ 36 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDS 36 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 56799999999999999999999999877643
No 317
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.18 E-value=0.00029 Score=68.33 Aligned_cols=34 Identities=26% Similarity=0.465 Sum_probs=29.3
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEE
Q 004267 239 VKPPKGILLYGPPGSGKTLIARAVANETGAFFFC 272 (764)
Q Consensus 239 i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~ 272 (764)
...+..|+|.|+|||||||+++.|+..++..++.
T Consensus 2 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 2 MQTPALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp CSCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 3456789999999999999999999999876654
No 318
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.18 E-value=0.00025 Score=66.88 Aligned_cols=31 Identities=23% Similarity=0.357 Sum_probs=28.5
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANET 266 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l 266 (764)
++.+.++..+.|.||+|+|||||++.|++.+
T Consensus 27 sl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 27 KLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HHCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ccccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4567888999999999999999999999987
No 319
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.18 E-value=0.00012 Score=84.29 Aligned_cols=28 Identities=29% Similarity=0.449 Sum_probs=25.7
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHh
Q 004267 239 VKPPKGILLYGPPGSGKTLIARAVANET 266 (764)
Q Consensus 239 i~~~~~vLL~GppGtGKTtLar~la~~l 266 (764)
+.+++.+.|.||+|+|||||+++|++.+
T Consensus 379 v~~Gei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 379 IRKGEVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4678899999999999999999999975
No 320
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.18 E-value=0.00079 Score=65.94 Aligned_cols=39 Identities=26% Similarity=0.433 Sum_probs=32.5
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh---CCeEEEEechhh
Q 004267 240 KPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEI 278 (764)
Q Consensus 240 ~~~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l 278 (764)
.++..|.|.||+||||||+++.|++.+ |...+.+++.++
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 567889999999999999999999988 554457777665
No 321
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.18 E-value=0.00014 Score=82.53 Aligned_cols=107 Identities=17% Similarity=0.159 Sum_probs=64.2
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhCCe---------EEEEec----------hhhhhhc-----c-----------
Q 004267 239 VKPPKGILLYGPPGSGKTLIARAVANETGAF---------FFCING----------PEIMSKL-----A----------- 283 (764)
Q Consensus 239 i~~~~~vLL~GppGtGKTtLar~la~~l~~~---------~i~v~~----------~~l~~~~-----~----------- 283 (764)
+.+++.+.|.||+|||||||+++|++.+... +-.+.- .+..... .
T Consensus 309 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~ 388 (538)
T 1yqt_A 309 IKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKP 388 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHH
Confidence 4678999999999999999999999975311 111100 0000000 0
Q ss_pred -----------c--hhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEe
Q 004267 284 -----------G--ESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGA 350 (764)
Q Consensus 284 -----------g--~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~a 350 (764)
+ ...++-+-.+..+....|.+|++|| +.+.++......+.+++..+....+..||.+
T Consensus 389 ~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDE----------Pt~~LD~~~~~~i~~~l~~l~~~~g~tvi~v 458 (538)
T 1yqt_A 389 LGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDE----------PSAYLDVEQRLAVSRAIRHLMEKNEKTALVV 458 (538)
T ss_dssp TTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEEC----------TTTTCCHHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred cCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeC----------CcccCCHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 0 0112334456677778899999999 4445555555666666666532223355566
Q ss_pred cCCCC
Q 004267 351 TNRPN 355 (764)
Q Consensus 351 tn~~~ 355 (764)
|++.+
T Consensus 459 sHd~~ 463 (538)
T 1yqt_A 459 EHDVL 463 (538)
T ss_dssp CSCHH
T ss_pred eCCHH
Confidence 77643
No 322
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=97.16 E-value=0.00052 Score=82.36 Aligned_cols=26 Identities=19% Similarity=0.186 Sum_probs=22.4
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHH
Q 004267 239 VKPPKGILLYGPPGSGKTLIARAVAN 264 (764)
Q Consensus 239 i~~~~~vLL~GppGtGKTtLar~la~ 264 (764)
+..++.++|+||+|+||||++|.++.
T Consensus 659 ~~~g~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 659 KDKQMFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp TTTBCEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45567799999999999999999954
No 323
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=97.15 E-value=0.00033 Score=80.83 Aligned_cols=32 Identities=25% Similarity=0.364 Sum_probs=28.5
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 267 (764)
++.+++++.+.|+||+|||||||++.|++...
T Consensus 364 sl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~ 395 (595)
T 2yl4_A 364 SLSIPSGSVTALVGPSGSGKSTVLSLLLRLYD 395 (595)
T ss_dssp EEEECTTCEEEEECCTTSSSTHHHHHHTTSSC
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 45678899999999999999999999998764
No 324
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.14 E-value=0.0005 Score=73.71 Aligned_cols=72 Identities=21% Similarity=0.368 Sum_probs=47.1
Q ss_pred CCCcceeeeCCCCCChhHHHHHHHHHhC----CeeEEEecc-cchh---------cccCcchHHHHHHHHHHhhCCCeEE
Q 004267 513 SPSKGVLFYGPPGCGKTLLAKAIANECQ----ANFISVKGP-ELLT---------MWFGESEANVREIFDKARQSAPCVL 578 (764)
Q Consensus 513 ~~~~gill~GppGtGKT~lak~lA~~~~----~~~i~v~~~-~l~~---------~~~g~se~~i~~~f~~a~~~~p~ii 578 (764)
.+..-+++.||+||||||+.+++++... ...+.+..+ ++.. ..++.........+..|-...|.+|
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~Pdvi 200 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDII 200 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEE
Confidence 3333489999999999999999998652 334433221 1110 1122222345667778888899999
Q ss_pred EEeccc
Q 004267 579 FFDELD 584 (764)
Q Consensus 579 fiDEid 584 (764)
++||+-
T Consensus 201 llDEp~ 206 (356)
T 3jvv_A 201 LVGEMR 206 (356)
T ss_dssp EESCCC
T ss_pred ecCCCC
Confidence 999973
No 325
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.14 E-value=0.00024 Score=68.74 Aligned_cols=33 Identities=36% Similarity=0.531 Sum_probs=27.9
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHH-hCCeEE
Q 004267 239 VKPPKGILLYGPPGSGKTLIARAVANE-TGAFFF 271 (764)
Q Consensus 239 i~~~~~vLL~GppGtGKTtLar~la~~-l~~~~i 271 (764)
...+..|+|+|+|||||||+++.|+.. ++.+++
T Consensus 7 ~~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~i 40 (184)
T 1y63_A 7 QPKGINILITGTPGTGKTSMAEMIAAELDGFQHL 40 (184)
T ss_dssp CCSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEe
Confidence 345667999999999999999999998 676554
No 326
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.13 E-value=0.00084 Score=74.74 Aligned_cols=37 Identities=22% Similarity=0.288 Sum_probs=30.6
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh----CCeEEEEe
Q 004267 238 GVKPPKGILLYGPPGSGKTLIARAVANET----GAFFFCIN 274 (764)
Q Consensus 238 ~i~~~~~vLL~GppGtGKTtLar~la~~l----~~~~i~v~ 274 (764)
|+.++.-++|.|+||+|||||+..++... +.++..++
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 78999999999999999999999988754 44555555
No 327
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.13 E-value=0.00049 Score=78.99 Aligned_cols=25 Identities=24% Similarity=0.473 Sum_probs=22.6
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Q 004267 242 PKGILLYGPPGSGKTLIARAVANET 266 (764)
Q Consensus 242 ~~~vLL~GppGtGKTtLar~la~~l 266 (764)
++.+.|.||+|+|||||+++|++.+
T Consensus 378 GEiv~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 378 SEILVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp TCEEEEESCTTSSHHHHHHHHHTSS
T ss_pred ceEEEEECCCCCcHHHHHHHHhcCC
Confidence 3569999999999999999999875
No 328
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.12 E-value=0.00037 Score=68.29 Aligned_cols=37 Identities=38% Similarity=0.585 Sum_probs=29.8
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhh
Q 004267 240 KPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEI 278 (764)
Q Consensus 240 ~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l 278 (764)
.++..++|.|||||||||+++.|++.+|.. .+++.++
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~--~i~~d~~ 63 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADETGLE--FAEADAF 63 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHCCE--EEEGGGG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhCCe--EEccccc
Confidence 457789999999999999999999999754 4555444
No 329
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.12 E-value=0.00052 Score=86.26 Aligned_cols=32 Identities=28% Similarity=0.503 Sum_probs=28.1
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 267 (764)
++.+++++.|.|+||+|||||||+++|.+.+.
T Consensus 1099 sl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~ 1130 (1321)
T 4f4c_A 1099 SFSVEPGQTLALVGPSGCGKSTVVALLERFYD 1130 (1321)
T ss_dssp EEEECTTCEEEEECSTTSSTTSHHHHHTTSSC
T ss_pred eEEECCCCEEEEECCCCChHHHHHHHHhcCcc
Confidence 35678999999999999999999999988653
No 330
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.10 E-value=0.00017 Score=69.86 Aligned_cols=67 Identities=16% Similarity=0.160 Sum_probs=37.0
Q ss_pred eeeeCCCCCChhHHHHHHHHH---hCCeeEEEecccchhcc--------cCcc-----hHHHHHHHHHHhhCCCeEEEEe
Q 004267 518 VLFYGPPGCGKTLLAKAIANE---CQANFISVKGPELLTMW--------FGES-----EANVREIFDKARQSAPCVLFFD 581 (764)
Q Consensus 518 ill~GppGtGKT~lak~lA~~---~~~~~i~v~~~~l~~~~--------~g~s-----e~~i~~~f~~a~~~~p~iifiD 581 (764)
.+++||+|+||||++..++.. .+.+.+.++.. +-..| .|.. ......+++.+. ..+.+||+|
T Consensus 6 ~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~-~d~r~~~~~i~s~~g~~~~~~~~~~~~~~~~~~~-~~~dvviID 83 (184)
T 2orw_A 6 TVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPK-IDSRYHSTMIVSHSGNGVEAHVIERPEEMRKYIE-EDTRGVFID 83 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC------CCCEECC----CEECEEESSGGGGGGGCC-TTEEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeec-cccccCcccEEecCCCceeeEEECCHHHHHHHhc-CCCCEEEEE
Confidence 789999999999998666654 34554444321 00011 1100 011223343332 246799999
Q ss_pred cccch
Q 004267 582 ELDSI 586 (764)
Q Consensus 582 Eid~l 586 (764)
|+..+
T Consensus 84 E~Q~~ 88 (184)
T 2orw_A 84 EVQFF 88 (184)
T ss_dssp CGGGS
T ss_pred CcccC
Confidence 99885
No 331
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.10 E-value=0.00048 Score=73.61 Aligned_cols=43 Identities=26% Similarity=0.380 Sum_probs=30.4
Q ss_pred hhhccCCCCcc--eeeeCCCCCChhHHHHHHHHHhC--CeeEEEecc
Q 004267 507 FEKFGMSPSKG--VLFYGPPGCGKTLLAKAIANECQ--ANFISVKGP 549 (764)
Q Consensus 507 ~~~~~~~~~~g--ill~GppGtGKT~lak~lA~~~~--~~~i~v~~~ 549 (764)
++.+++....| +.|.||||||||||.+++|+... ..-+.+++.
T Consensus 31 l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~ 77 (355)
T 1z47_A 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGK 77 (355)
T ss_dssp EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTE
T ss_pred EeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCE
Confidence 44444444444 88999999999999999999653 344555543
No 332
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.10 E-value=0.00032 Score=88.13 Aligned_cols=46 Identities=24% Similarity=0.507 Sum_probs=34.5
Q ss_pred hhhhccCCCCcc--eeeeCCCCCChhHHHHHHHHHhC--CeeEEEecccc
Q 004267 506 KFEKFGMSPSKG--VLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPEL 551 (764)
Q Consensus 506 ~~~~~~~~~~~g--ill~GppGtGKT~lak~lA~~~~--~~~i~v~~~~l 551 (764)
.++++++..++| +.|+||+|||||||++++.+... .+-|.++|-++
T Consensus 1094 VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di 1143 (1321)
T 4f4c_A 1094 ILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEI 1143 (1321)
T ss_dssp SEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEET
T ss_pred cccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEh
Confidence 466666555555 99999999999999999998653 45677766544
No 333
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.09 E-value=0.0016 Score=67.66 Aligned_cols=39 Identities=36% Similarity=0.550 Sum_probs=32.0
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhh
Q 004267 240 KPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEI 278 (764)
Q Consensus 240 ~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l 278 (764)
..+..|+|.|||||||||+++.|+..++..++.+++..+
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 456779999999999999999999998655677776444
No 334
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.09 E-value=0.00092 Score=66.61 Aligned_cols=73 Identities=18% Similarity=0.139 Sum_probs=43.9
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHh---CCeEEEEechh-------hhhhccchh-H----HHHHHHHHHHHh----cC
Q 004267 241 PPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPE-------IMSKLAGES-E----SNLRKAFEEAEK----NA 301 (764)
Q Consensus 241 ~~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~-------l~~~~~g~~-~----~~l~~vf~~a~~----~~ 301 (764)
++.-++++||+|+||||++..++..+ +..++.++... +.+. .|.. . .....+++.+.. ..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~ 89 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDE 89 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTT
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCC
Confidence 45668999999999999888877665 44454443211 1111 1100 0 012345555544 35
Q ss_pred CeEEEEccccccC
Q 004267 302 PSIIFIDEIDSIA 314 (764)
Q Consensus 302 p~il~iDEid~l~ 314 (764)
+.+|+|||+.++.
T Consensus 90 ~dvViIDEaQ~l~ 102 (223)
T 2b8t_A 90 TKVIGIDEVQFFD 102 (223)
T ss_dssp CCEEEECSGGGSC
T ss_pred CCEEEEecCccCc
Confidence 8899999998753
No 335
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.09 E-value=0.00074 Score=65.35 Aligned_cols=24 Identities=29% Similarity=0.192 Sum_probs=19.6
Q ss_pred CceEEEECCCCCCHHHHHHHHHHH
Q 004267 242 PKGILLYGPPGSGKTLIARAVANE 265 (764)
Q Consensus 242 ~~~vLL~GppGtGKTtLar~la~~ 265 (764)
+.-++++||+|+||||++..++..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999998666544
No 336
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.06 E-value=0.00048 Score=73.68 Aligned_cols=45 Identities=20% Similarity=0.327 Sum_probs=32.0
Q ss_pred hhhhccCCCCcc--eeeeCCCCCChhHHHHHHHHHhC--CeeEEEeccc
Q 004267 506 KFEKFGMSPSKG--VLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPE 550 (764)
Q Consensus 506 ~~~~~~~~~~~g--ill~GppGtGKT~lak~lA~~~~--~~~i~v~~~~ 550 (764)
.++.+++....| +.|.||||||||||.+++++... ..-+.+++.+
T Consensus 43 aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~ 91 (366)
T 3tui_C 43 ALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQE 91 (366)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEE
T ss_pred EEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEE
Confidence 344445555555 89999999999999999999653 3455555543
No 337
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.06 E-value=0.00046 Score=65.85 Aligned_cols=36 Identities=33% Similarity=0.478 Sum_probs=29.1
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhh
Q 004267 241 PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEI 278 (764)
Q Consensus 241 ~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l 278 (764)
++..++|.|||||||||+++.|++.++..+ +++.++
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~--i~~d~~ 42 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQLHAAF--LDGDFL 42 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHHTCEE--EEGGGG
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhhCcEE--EeCccc
Confidence 466799999999999999999999987654 454443
No 338
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.05 E-value=0.00051 Score=65.94 Aligned_cols=33 Identities=33% Similarity=0.556 Sum_probs=28.8
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCeEEE
Q 004267 240 KPPKGILLYGPPGSGKTLIARAVANETGAFFFC 272 (764)
Q Consensus 240 ~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~ 272 (764)
..+..|+|+|+|||||||+++.|+..++..++.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~ 41 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKSGLKYIN 41 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEE
Confidence 446679999999999999999999999877654
No 339
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.03 E-value=0.00038 Score=67.06 Aligned_cols=32 Identities=19% Similarity=0.270 Sum_probs=28.3
Q ss_pred CcceeeeCCCCCChhHHHHHHHHHhCCeeEEE
Q 004267 515 SKGVLFYGPPGCGKTLLAKAIANECQANFISV 546 (764)
Q Consensus 515 ~~gill~GppGtGKT~lak~lA~~~~~~~i~v 546 (764)
++.++|.|||||||||+++.+|..++.+|+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~ 36 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDS 36 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 34699999999999999999999999888754
No 340
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.03 E-value=0.0015 Score=66.85 Aligned_cols=38 Identities=24% Similarity=0.299 Sum_probs=31.2
Q ss_pred CceEEEECCCCCCHHHHHHHHHHH---hCCeEEEEechhhh
Q 004267 242 PKGILLYGPPGSGKTLIARAVANE---TGAFFFCINGPEIM 279 (764)
Q Consensus 242 ~~~vLL~GppGtGKTtLar~la~~---l~~~~i~v~~~~l~ 279 (764)
+..|+|.|+|||||||+++.|+.. .+..++.++...+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~ 44 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR 44 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHH
Confidence 457999999999999999999998 67777766665544
No 341
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.00 E-value=0.0007 Score=65.79 Aligned_cols=135 Identities=15% Similarity=0.219 Sum_probs=0.0
Q ss_pred eeeeCCCCCChhHHHHHHHHHh--------------------CCeeEEEeccc-------------------chhcccCc
Q 004267 518 VLFYGPPGCGKTLLAKAIANEC--------------------QANFISVKGPE-------------------LLTMWFGE 558 (764)
Q Consensus 518 ill~GppGtGKT~lak~lA~~~--------------------~~~~i~v~~~~-------------------l~~~~~g~ 558 (764)
+.|.||||+|||||++.+++.. ...++..+... ...+|...
T Consensus 4 i~i~G~nG~GKTTll~~l~g~~~~~Gi~~~g~~~~~~~~~~~~ig~~~~~~~g~~~~l~~~~~~~~~~~~~~~v~~~~~~ 83 (189)
T 2i3b_A 4 VFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRVGLEPPPGKRECRVGQYVVD 83 (189)
T ss_dssp EEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECCEEETTSSEEEEEEEETTSCEEEEEECCCCCCSSSCCEESSSSEEC
T ss_pred EEEECCCCChHHHHHHHHHhhcccCCEEEcCEecchhHhhhceEEEEEEecccceehhhcccccCCccccccccceEEEc
Q ss_pred chHHHHHHHHHHhh------CCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEE--EecCCCC
Q 004267 559 SEANVREIFDKARQ------SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFI--IGATNRP 630 (764)
Q Consensus 559 se~~i~~~f~~a~~------~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~v--i~aTn~~ 630 (764)
...--+..+..... ..|.++++||++.+ +......+..+...++ ....+++ +.-+.+.
T Consensus 84 ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~-----------~~~~~~~~~~l~~~l~---~~~~~ilgti~vsh~~ 149 (189)
T 2i3b_A 84 LTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKM-----------ELFSQLFIQAVRQTLS---TPGTIILGTIPVPKGK 149 (189)
T ss_dssp HHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTT-----------TTTCSHHHHHHHHHHH---CSSCCEEEECCCCCSS
T ss_pred chHHHHHHHHHHhhhhHhhccCCCEEEEeCCCcc-----------ccccHHHHHHHHHHHh---CCCcEEEEEeecCCCC
Q ss_pred --CCCCccCCCCCccceEEeecCCCHHHHHHHHHHHhccC
Q 004267 631 --DIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKS 668 (764)
Q Consensus 631 --~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~ 668 (764)
..+|.-..+ .--+++.+..-+.+...+-+-..+++.
T Consensus 150 ~~~~vd~i~~~--~~~~i~~~~~~nr~~~~~~i~~~~~~~ 187 (189)
T 2i3b_A 150 PLALVEEIRNR--KDVKVFNVTKENRNHLLPDIVTCVQSS 187 (189)
T ss_dssp CCTTHHHHHTT--CCSEEEECCSSSGGGHHHHHHHHHTTS
T ss_pred chHHHHHHeec--CCcEEEEeChHhHHHHHHHHHHHHHHh
No 342
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.00 E-value=0.00045 Score=66.00 Aligned_cols=29 Identities=38% Similarity=0.577 Sum_probs=26.3
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCeEEE
Q 004267 244 GILLYGPPGSGKTLIARAVANETGAFFFC 272 (764)
Q Consensus 244 ~vLL~GppGtGKTtLar~la~~l~~~~i~ 272 (764)
.|+|.|||||||||+++.||..++..++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 59999999999999999999999977653
No 343
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.00 E-value=0.00046 Score=65.42 Aligned_cols=31 Identities=23% Similarity=0.136 Sum_probs=27.1
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCeEEEEe
Q 004267 244 GILLYGPPGSGKTLIARAVANETGAFFFCIN 274 (764)
Q Consensus 244 ~vLL~GppGtGKTtLar~la~~l~~~~i~v~ 274 (764)
.|+|.|||||||||+++.|+..++..++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 5899999999999999999999997765443
No 344
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.99 E-value=0.00057 Score=70.78 Aligned_cols=29 Identities=28% Similarity=0.401 Sum_probs=23.8
Q ss_pred cCCCCcceeeeCCCCCChhHHHHHHHHHh
Q 004267 511 GMSPSKGVLFYGPPGCGKTLLAKAIANEC 539 (764)
Q Consensus 511 ~~~~~~gill~GppGtGKT~lak~lA~~~ 539 (764)
|+....-++|+||||+|||||++.++...
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45555559999999999999999998743
No 345
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=96.99 E-value=0.0053 Score=76.90 Aligned_cols=168 Identities=13% Similarity=0.123 Sum_probs=94.7
Q ss_pred cccccChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHHHh---C----CeEEEEechh--
Q 004267 207 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---G----AFFFCINGPE-- 277 (764)
Q Consensus 207 ~~~i~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l---~----~~~i~v~~~~-- 277 (764)
...+.|.++.+++|.+.+... -...+.|.|+|+.|+||||||+.++... . ..++.++...
T Consensus 123 ~~~~vgR~~~~~~l~~~l~~~-----------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~ 191 (1249)
T 3sfz_A 123 PVIFVTRKKLVHAIQQKLWKL-----------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQD 191 (1249)
T ss_dssp CSSCCCCHHHHHHHHHHHHTT-----------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCC
T ss_pred CceeccHHHHHHHHHHHHhhc-----------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcC
Confidence 345899999999998887531 0234679999999999999999887642 2 1233444221
Q ss_pred ---hh-------hhc---------cchhHHHHHHHHHHHHhcC--CeEEEEccccccCCCCCCCchHHHHHHHHHHHHHh
Q 004267 278 ---IM-------SKL---------AGESESNLRKAFEEAEKNA--PSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLM 336 (764)
Q Consensus 278 ---l~-------~~~---------~g~~~~~l~~vf~~a~~~~--p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~l 336 (764)
+. ... .......+...+....... +.+|+||+++.. .+ +
T Consensus 192 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~----------------~~----~ 251 (1249)
T 3sfz_A 192 KSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP----------------WV----L 251 (1249)
T ss_dssp HHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH----------------HH----H
T ss_pred chHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH----------------HH----H
Confidence 10 000 0111223333344333333 789999998732 11 2
Q ss_pred hcccCCCeEEEEEecCCCCCCChhhhccCCcceEEEecC-CChHHHHHHHHHHhcCCCCCCchhhhHHhhhcCCCc
Q 004267 337 DGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGV-PDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYV 411 (764)
Q Consensus 337 d~~~~~~~v~vI~atn~~~~ld~al~r~~rf~~~i~i~~-p~~~~R~~il~~~~~~~~l~~~~~l~~la~~t~g~~ 411 (764)
..+.. +..||.||..+...... ......+.++. .+.++-.+++..+.....-.......++++.+.|..
T Consensus 252 ~~~~~--~~~ilvTtR~~~~~~~~----~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~glP 321 (1249)
T 3sfz_A 252 KAFDN--QCQILLTTRDKSVTDSV----MGPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSP 321 (1249)
T ss_dssp TTTCS--SCEEEEEESSTTTTTTC----CSCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTCH
T ss_pred HhhcC--CCEEEEEcCCHHHHHhh----cCCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCCH
Confidence 22222 33555577655332111 12234566765 778888888877664332222234567777777764
No 346
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=96.97 E-value=0.003 Score=72.65 Aligned_cols=145 Identities=15% Similarity=0.219 Sum_probs=75.9
Q ss_pred cceeeeCCCCCChhHHHHHHHHHh---------CCeeEEEeccc---chhcc------cC----------cchHHHHHHH
Q 004267 516 KGVLFYGPPGCGKTLLAKAIANEC---------QANFISVKGPE---LLTMW------FG----------ESEANVREIF 567 (764)
Q Consensus 516 ~gill~GppGtGKT~lak~lA~~~---------~~~~i~v~~~~---l~~~~------~g----------~se~~i~~~f 567 (764)
+-++++||+|+|||+||+.++... +.-++.+...+ +...+ .+ .....+...+
T Consensus 148 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l 227 (591)
T 1z6t_A 148 GWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRL 227 (591)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHH
T ss_pred ceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCchHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHH
Confidence 348999999999999999987521 12233343321 11100 11 1111222222
Q ss_pred H-HHhh-CCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCCCCCccCCCCCccce
Q 004267 568 D-KARQ-SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQ 645 (764)
Q Consensus 568 ~-~a~~-~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~ 645 (764)
. .... ..|.+|++|+++... .+..+ . .+..||.||..+..... .. | .
T Consensus 228 ~~~l~~~~~~~LLVLDdv~~~~--------------------~l~~l---~--~~~~ilvTsR~~~~~~~--~~-~---~ 276 (591)
T 1z6t_A 228 RILMLRKHPRSLLILDDVWDSW--------------------VLKAF---D--SQCQILLTTRDKSVTDS--VM-G---P 276 (591)
T ss_dssp HHHHHHTCTTCEEEEEEECCHH--------------------HHHTT---C--SSCEEEEEESCGGGGTT--CC-S---C
T ss_pred HHHHccCCCCeEEEEeCCCCHH--------------------HHHHh---c--CCCeEEEECCCcHHHHh--cC-C---C
Confidence 2 2222 257899999986421 12222 1 23456667764432211 11 1 2
Q ss_pred EEee---cCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHH
Q 004267 646 LIYI---PLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADIT 692 (764)
Q Consensus 646 ~i~~---~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~sg~di~ 692 (764)
...+ .+.+.++-.++|........-........+++.+.|. +--|+
T Consensus 277 ~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~-PLal~ 325 (591)
T 1z6t_A 277 KYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGS-PLVVS 325 (591)
T ss_dssp EEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTC-HHHHH
T ss_pred ceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCC-cHHHH
Confidence 3334 3678889999998887542211233467788888764 33343
No 347
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.97 E-value=0.00062 Score=73.62 Aligned_cols=79 Identities=19% Similarity=0.336 Sum_probs=48.1
Q ss_pred hhhhccCCCCcceeeeCCCCCChhHHHHHHHHHhC---CeeE-EEecc-cc-hh---cccCc-----chHHHHHHHHHHh
Q 004267 506 KFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ---ANFI-SVKGP-EL-LT---MWFGE-----SEANVREIFDKAR 571 (764)
Q Consensus 506 ~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~~---~~~i-~v~~~-~l-~~---~~~g~-----se~~i~~~f~~a~ 571 (764)
.+..+.+.+...++|.||+|+||||+++++++... ..-+ .+..+ ++ .. .|+.+ .....+.....+-
T Consensus 127 ~l~~l~~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L 206 (372)
T 2ewv_A 127 KVLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAAL 206 (372)
T ss_dssp SHHHHTTSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHT
T ss_pred HHHHHhhcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHh
Confidence 44444455555599999999999999999999653 2233 33221 11 00 01111 2223455556666
Q ss_pred hCCCeEEEEeccc
Q 004267 572 QSAPCVLFFDELD 584 (764)
Q Consensus 572 ~~~p~iifiDEid 584 (764)
...|.+|++||+-
T Consensus 207 ~~~pd~illdE~~ 219 (372)
T 2ewv_A 207 REDPDVIFVGEMR 219 (372)
T ss_dssp TSCCSEEEESCCC
T ss_pred hhCcCEEEECCCC
Confidence 6789999999984
No 348
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.97 E-value=0.0005 Score=65.39 Aligned_cols=29 Identities=24% Similarity=0.657 Sum_probs=25.7
Q ss_pred cceeeeCCCCCChhHHHHHHHHHhCCeeE
Q 004267 516 KGVLFYGPPGCGKTLLAKAIANECQANFI 544 (764)
Q Consensus 516 ~gill~GppGtGKT~lak~lA~~~~~~~i 544 (764)
..++|.|||||||||+++.+|+.++..++
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~i 33 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFY 33 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 35899999999999999999999987654
No 349
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.97 E-value=0.0002 Score=68.51 Aligned_cols=20 Identities=35% Similarity=0.524 Sum_probs=17.3
Q ss_pred CcceeeeCCCCCChhHHHHH
Q 004267 515 SKGVLFYGPPGCGKTLLAKA 534 (764)
Q Consensus 515 ~~gill~GppGtGKT~lak~ 534 (764)
+.-++|.||||||||||+++
T Consensus 9 gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHH
Confidence 33489999999999999994
No 350
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.97 E-value=0.0019 Score=67.63 Aligned_cols=73 Identities=19% Similarity=0.233 Sum_probs=46.0
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHh---CCeEEEEechhhhh-------hc------------c-chhHHHHHHHHH
Q 004267 239 VKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMS-------KL------------A-GESESNLRKAFE 295 (764)
Q Consensus 239 i~~~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~-------~~------------~-g~~~~~l~~vf~ 295 (764)
..+++.++|+||+|+||||++..||+.+ +..+..+++..... .+ . ++....+...+.
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~ 180 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVA 180 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHH
T ss_pred CCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 4567889999999999999999999876 44444444321100 00 0 111112233455
Q ss_pred HHHhcCCeEEEEcccc
Q 004267 296 EAEKNAPSIIFIDEID 311 (764)
Q Consensus 296 ~a~~~~p~il~iDEid 311 (764)
.+....+.++++|+.-
T Consensus 181 ~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 181 HALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHHTTCSEEEEEECC
T ss_pred HHHhcCCCEEEEECCC
Confidence 6667788999999864
No 351
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.95 E-value=0.00052 Score=66.12 Aligned_cols=30 Identities=33% Similarity=0.576 Sum_probs=26.5
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCeEE
Q 004267 242 PKGILLYGPPGSGKTLIARAVANETGAFFF 271 (764)
Q Consensus 242 ~~~vLL~GppGtGKTtLar~la~~l~~~~i 271 (764)
+..|+|.|+|||||||+++.|+..++..++
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~~~~i 33 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELGFKKL 33 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 557999999999999999999999986544
No 352
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.94 E-value=0.0011 Score=67.48 Aligned_cols=37 Identities=27% Similarity=0.496 Sum_probs=31.7
Q ss_pred CcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccc
Q 004267 515 SKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 551 (764)
Q Consensus 515 ~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l 551 (764)
+..++|.|+|||||||+|+.++..++.+++.+++..+
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 4459999999999999999999998877777777665
No 353
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.93 E-value=0.00078 Score=64.58 Aligned_cols=38 Identities=26% Similarity=0.411 Sum_probs=32.3
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHh---CCeEEEEechhh
Q 004267 241 PPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEI 278 (764)
Q Consensus 241 ~~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l 278 (764)
++..|.|.|++||||||+++.|++.+ +.+++.+++..+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~ 44 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 44 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHH
Confidence 46789999999999999999999987 878887775443
No 354
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.93 E-value=0.0005 Score=67.32 Aligned_cols=29 Identities=24% Similarity=0.478 Sum_probs=25.5
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhC
Q 004267 239 VKPPKGILLYGPPGSGKTLIARAVANETG 267 (764)
Q Consensus 239 i~~~~~vLL~GppGtGKTtLar~la~~l~ 267 (764)
+.++..+.|.||+|||||||++.|++..+
T Consensus 4 m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 45678899999999999999999999865
No 355
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.93 E-value=0.00052 Score=66.46 Aligned_cols=32 Identities=28% Similarity=0.446 Sum_probs=27.5
Q ss_pred CCcceeeeCCCCCChhHHHHHHHHHhCCeeEE
Q 004267 514 PSKGVLFYGPPGCGKTLLAKAIANECQANFIS 545 (764)
Q Consensus 514 ~~~gill~GppGtGKT~lak~lA~~~~~~~i~ 545 (764)
.+.-++|.|+|||||||+++.++..++..++.
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 34558999999999999999999999877654
No 356
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.93 E-value=0.0026 Score=71.64 Aligned_cols=75 Identities=16% Similarity=0.296 Sum_probs=52.6
Q ss_pred CeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCC--CCCccCCCCCccceEEeecCC
Q 004267 575 PCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPD--IIDPALLRPGRLDQLIYIPLP 652 (764)
Q Consensus 575 p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~--~ld~allrpgRf~~~i~~~~p 652 (764)
+-+|++||+..+...- .......+..+.++ -..-++.+|.+|.+|. .|+..++. -|...|.+...
T Consensus 344 ~ivvVIDE~~~L~~~~-------~~~~~~~L~~Iar~----GRa~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~ 410 (574)
T 2iut_A 344 TIVVVVDEFADMMMIV-------GKKVEELIARIAQK----ARAAGIHLILATQRPSVDVITGLIKA--NIPTRIAFQVS 410 (574)
T ss_dssp EEEEEESCCTTHHHHT-------CHHHHHHHHHHHHH----CTTTTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCS
T ss_pred cEEEEEeCHHHHhhhh-------hHHHHHHHHHHHHH----HhhCCeEEEEEecCcccccccHHHHh--hhccEEEEEcC
Confidence 3689999999887531 11223334444433 2345789999999987 78777665 78889999999
Q ss_pred CHHHHHHHHH
Q 004267 653 DEDSRHQIFK 662 (764)
Q Consensus 653 ~~~~r~~Il~ 662 (764)
+..+...|+.
T Consensus 411 s~~Dsr~ILd 420 (574)
T 2iut_A 411 SKIDSRTILD 420 (574)
T ss_dssp CHHHHHHHHS
T ss_pred CHHHHHHhcC
Confidence 9888877874
No 357
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.92 E-value=0.00044 Score=70.36 Aligned_cols=31 Identities=35% Similarity=0.540 Sum_probs=28.4
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCeEEE
Q 004267 242 PKGILLYGPPGSGKTLIARAVANETGAFFFC 272 (764)
Q Consensus 242 ~~~vLL~GppGtGKTtLar~la~~l~~~~i~ 272 (764)
+..|.|+|++||||||+++.||+.++..++.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d 78 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFD 78 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEe
Confidence 7789999999999999999999999987654
No 358
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.91 E-value=0.0037 Score=62.81 Aligned_cols=38 Identities=29% Similarity=0.368 Sum_probs=28.2
Q ss_pred cCCCCcceeeeCCCCCChhHHHHHHHHH---hCCeeEEEec
Q 004267 511 GMSPSKGVLFYGPPGCGKTLLAKAIANE---CQANFISVKG 548 (764)
Q Consensus 511 ~~~~~~gill~GppGtGKT~lak~lA~~---~~~~~i~v~~ 548 (764)
|+.+..-++|+||||+|||+++..+|.. .+.+.+.++.
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 5666666999999999999998877764 2445555544
No 359
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=96.90 E-value=0.0071 Score=68.96 Aligned_cols=144 Identities=12% Similarity=0.091 Sum_probs=82.0
Q ss_pred cChHHHHHHHHHHHHccccChhhhhhhCCCCCceEEEECCCCCCHHHHHHHHHH----HhCCeE---EEEechh-----h
Q 004267 211 GGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVAN----ETGAFF---FCINGPE-----I 278 (764)
Q Consensus 211 ~Gl~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~----~l~~~~---i~v~~~~-----l 278 (764)
.|.+..+++|.+.+... +-.....|.|+|+.|+||||||+.+++ .....| +.++.+. .
T Consensus 131 ~GR~~~~~~l~~~L~~~----------~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~ 200 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM----------CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKST 200 (549)
T ss_dssp CCCHHHHHHHHHHHHHH----------TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHH
T ss_pred CCchHHHHHHHHHHhcc----------cCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCH
Confidence 39999999998887421 112356799999999999999999997 333222 3333222 1
Q ss_pred -------hhhccc------------hhHHHHHHHHHHHHhcC-CeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhc
Q 004267 279 -------MSKLAG------------ESESNLRKAFEEAEKNA-PSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDG 338 (764)
Q Consensus 279 -------~~~~~g------------~~~~~l~~vf~~a~~~~-p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~ 338 (764)
...... .....+...+....... +.+|++|+++.. .++ .+...
T Consensus 201 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~----------------~~~-~~~~~ 263 (549)
T 2a5y_B 201 FDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQE----------------ETI-RWAQE 263 (549)
T ss_dssp HHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCH----------------HHH-HHHHH
T ss_pred HHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCc----------------hhh-ccccc
Confidence 110000 01122344455555554 899999998742 111 11111
Q ss_pred ccCCCeEEEEEecCCCCCCChhhhccCCcceEEEecCCChHHHHHHHHHHh
Q 004267 339 LKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHT 389 (764)
Q Consensus 339 ~~~~~~v~vI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il~~~~ 389 (764)
.+..||.||.... +. ...+.....+.++..+.++-.+++..+.
T Consensus 264 ----~gs~ilvTTR~~~-v~---~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 306 (549)
T 2a5y_B 264 ----LRLRCLVTTRDVE-IS---NAASQTCEFIEVTSLEIDECYDFLEAYG 306 (549)
T ss_dssp ----TTCEEEEEESBGG-GG---GGCCSCEEEEECCCCCHHHHHHHHHHTS
T ss_pred ----CCCEEEEEcCCHH-HH---HHcCCCCeEEECCCCCHHHHHHHHHHHh
Confidence 2234444665432 11 1111233568888889988888888764
No 360
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.90 E-value=0.00066 Score=64.33 Aligned_cols=31 Identities=23% Similarity=0.232 Sum_probs=27.5
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCeEEE
Q 004267 242 PKGILLYGPPGSGKTLIARAVANETGAFFFC 272 (764)
Q Consensus 242 ~~~vLL~GppGtGKTtLar~la~~l~~~~i~ 272 (764)
-..|+|.|++||||||+++.||..++.+++.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg~~~id 37 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALKLEVLD 37 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 3579999999999999999999999987764
No 361
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.89 E-value=0.00049 Score=68.53 Aligned_cols=32 Identities=22% Similarity=0.354 Sum_probs=25.2
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 267 (764)
++.+.+++.+.|+||+|+|||||++.|++...
T Consensus 17 sl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~p 48 (218)
T 1z6g_A 17 RGSMNNIYPLVICGPSGVGKGTLIKKLLNEFP 48 (218)
T ss_dssp -----CCCCEEEECSTTSSHHHHHHHHHHHST
T ss_pred ceecCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 34567888899999999999999999999873
No 362
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.88 E-value=0.00069 Score=65.20 Aligned_cols=30 Identities=37% Similarity=0.528 Sum_probs=26.8
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCeEEE
Q 004267 243 KGILLYGPPGSGKTLIARAVANETGAFFFC 272 (764)
Q Consensus 243 ~~vLL~GppGtGKTtLar~la~~l~~~~i~ 272 (764)
..|+|.|+|||||||+++.|+..++.+++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLD 32 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEe
Confidence 359999999999999999999999987654
No 363
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=96.88 E-value=0.00063 Score=69.35 Aligned_cols=29 Identities=38% Similarity=0.525 Sum_probs=25.4
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCC
Q 004267 240 KPPKGILLYGPPGSGKTLIARAVANETGA 268 (764)
Q Consensus 240 ~~~~~vLL~GppGtGKTtLar~la~~l~~ 268 (764)
++..+++|+||||||||+++++||+.++.
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 34568999999999999999999998654
No 364
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.88 E-value=0.0071 Score=66.27 Aligned_cols=71 Identities=18% Similarity=0.184 Sum_probs=48.4
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHh---CCeEEEEechhhh----------h---------h-ccchhHHHHHHHHHHH
Q 004267 241 PPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIM----------S---------K-LAGESESNLRKAFEEA 297 (764)
Q Consensus 241 ~~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~----------~---------~-~~g~~~~~l~~vf~~a 297 (764)
++..|+++|++|+||||++..||..+ +..+..+.+.... . . ........+...++.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999998765 4555555542110 0 0 0112334456677788
Q ss_pred HhcCCeEEEEcccc
Q 004267 298 EKNAPSIIFIDEID 311 (764)
Q Consensus 298 ~~~~p~il~iDEid 311 (764)
....++++++|..-
T Consensus 179 ~~~~~DvVIIDTaG 192 (443)
T 3dm5_A 179 KSKGVDIIIVDTAG 192 (443)
T ss_dssp HHTTCSEEEEECCC
T ss_pred HhCCCCEEEEECCC
Confidence 77778999999864
No 365
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.86 E-value=0.00089 Score=66.45 Aligned_cols=39 Identities=21% Similarity=0.358 Sum_probs=31.4
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhh
Q 004267 239 VKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIM 279 (764)
Q Consensus 239 i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~ 279 (764)
+..++-|+|.|||||||+|.|+.|+..++... ++..+++
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~h--IstGdll 64 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNH--LSSGDLL 64 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHCCEE--ECHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHCCce--EcHHHHH
Confidence 45677899999999999999999999998654 4444544
No 366
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.85 E-value=0.00088 Score=65.56 Aligned_cols=33 Identities=33% Similarity=0.485 Sum_probs=28.1
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCeEEEE
Q 004267 241 PPKGILLYGPPGSGKTLIARAVANETGAFFFCI 273 (764)
Q Consensus 241 ~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v 273 (764)
.+..|+|.|+|||||||+++.|+..++..++..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 345799999999999999999999998775543
No 367
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.85 E-value=0.00081 Score=65.87 Aligned_cols=31 Identities=35% Similarity=0.596 Sum_probs=27.0
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCeEEE
Q 004267 242 PKGILLYGPPGSGKTLIARAVANETGAFFFC 272 (764)
Q Consensus 242 ~~~vLL~GppGtGKTtLar~la~~l~~~~i~ 272 (764)
+..|+|.|+|||||||+++.|++.++..++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 4579999999999999999999999866543
No 368
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.85 E-value=0.00085 Score=64.92 Aligned_cols=30 Identities=23% Similarity=0.464 Sum_probs=26.8
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCeEE
Q 004267 242 PKGILLYGPPGSGKTLIARAVANETGAFFF 271 (764)
Q Consensus 242 ~~~vLL~GppGtGKTtLar~la~~l~~~~i 271 (764)
+..|+|.|+|||||||+++.|+..++..++
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i 32 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHL 32 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 567999999999999999999999987654
No 369
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.85 E-value=0.00067 Score=64.79 Aligned_cols=29 Identities=34% Similarity=0.635 Sum_probs=26.4
Q ss_pred ceeeeCCCCCChhHHHHHHHHHhCCeeEE
Q 004267 517 GVLFYGPPGCGKTLLAKAIANECQANFIS 545 (764)
Q Consensus 517 gill~GppGtGKT~lak~lA~~~~~~~i~ 545 (764)
.++|.|||||||||+|+.||..++.+|+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 48999999999999999999999987764
No 370
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.85 E-value=0.00088 Score=66.59 Aligned_cols=32 Identities=28% Similarity=0.443 Sum_probs=27.8
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCeEEE
Q 004267 241 PPKGILLYGPPGSGKTLIARAVANETGAFFFC 272 (764)
Q Consensus 241 ~~~~vLL~GppGtGKTtLar~la~~l~~~~i~ 272 (764)
++..|+|.|+|||||||+++.|+..++..++.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 34 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLA 34 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEe
Confidence 35679999999999999999999999876544
No 371
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.84 E-value=0.00081 Score=65.25 Aligned_cols=33 Identities=24% Similarity=0.372 Sum_probs=28.4
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCeEEEE
Q 004267 241 PPKGILLYGPPGSGKTLIARAVANETGAFFFCI 273 (764)
Q Consensus 241 ~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v 273 (764)
.+..|+|.|+|||||||+++.|+..++..++..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 456799999999999999999999998765543
No 372
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.84 E-value=0.00069 Score=64.99 Aligned_cols=32 Identities=38% Similarity=0.666 Sum_probs=27.7
Q ss_pred CcceeeeCCCCCChhHHHHHHHHHhCCeeEEE
Q 004267 515 SKGVLFYGPPGCGKTLLAKAIANECQANFISV 546 (764)
Q Consensus 515 ~~gill~GppGtGKT~lak~lA~~~~~~~i~v 546 (764)
+..++|.|+|||||||+++.++..++..++..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 34599999999999999999999998877643
No 373
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.84 E-value=0.00066 Score=64.31 Aligned_cols=31 Identities=23% Similarity=0.351 Sum_probs=26.8
Q ss_pred ceeeeCCCCCChhHHHHHHHHHhCCeeEEEe
Q 004267 517 GVLFYGPPGCGKTLLAKAIANECQANFISVK 547 (764)
Q Consensus 517 gill~GppGtGKT~lak~lA~~~~~~~i~v~ 547 (764)
-++|.|||||||||+++.|+..++..++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 3789999999999999999999998775443
No 374
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.83 E-value=0.0033 Score=70.30 Aligned_cols=77 Identities=17% Similarity=0.342 Sum_probs=51.2
Q ss_pred CCe-EEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCC--CCCccCCCCCccceEEeec
Q 004267 574 APC-VLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPD--IIDPALLRPGRLDQLIYIP 650 (764)
Q Consensus 574 ~p~-iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~--~ld~allrpgRf~~~i~~~ 650 (764)
.|. ++++||...+.... ......++..+.+. ...-++.+|.+|.+|. .++..+.. .|...|.|.
T Consensus 296 lP~ivlvIDE~~~ll~~~-------~~~~~~~l~~Lar~----gRa~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lr 362 (512)
T 2ius_A 296 EPYIVVLVDEFADLMMTV-------GKKVEELIARLAQK----ARAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFT 362 (512)
T ss_dssp CCEEEEEEETHHHHHHHH-------HHHHHHHHHHHHHH----CGGGTEEEEEEESCCCTTTSCHHHHH--HCCEEEEEC
T ss_pred CCcEEEEEeCHHHHHhhh-------hHHHHHHHHHHHHH----hhhCCcEEEEEecCCccccccHHHHh--hcCCeEEEE
Confidence 354 89999998876521 01223333333332 1233678889999987 57766665 788899999
Q ss_pred CCCHHHHHHHHHH
Q 004267 651 LPDEDSRHQIFKA 663 (764)
Q Consensus 651 ~p~~~~r~~Il~~ 663 (764)
..+..+...|+..
T Consensus 363 v~s~~dsr~ilg~ 375 (512)
T 2ius_A 363 VSSKIDSRTILDQ 375 (512)
T ss_dssp CSSHHHHHHHHSS
T ss_pred cCCHHHHHHhcCC
Confidence 9999888888753
No 375
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=96.82 E-value=0.0022 Score=75.90 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=23.2
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Q 004267 240 KPPKGILLYGPPGSGKTLIARAVANE 265 (764)
Q Consensus 240 ~~~~~vLL~GppGtGKTtLar~la~~ 265 (764)
.+++.++|+||+|+||||++|.+++.
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHHHHHHH
Confidence 45677999999999999999999876
No 376
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=96.82 E-value=0.0066 Score=76.04 Aligned_cols=165 Identities=12% Similarity=0.132 Sum_probs=89.8
Q ss_pred ccccchhhhhcccceeeccCCChhhhhhccCCCCcceeeeCCCCCChhHHHHHHHHHh---C--C--eeEEEecccc---
Q 004267 482 DIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---Q--A--NFISVKGPEL--- 551 (764)
Q Consensus 482 ~i~g~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lak~lA~~~---~--~--~~i~v~~~~l--- 551 (764)
.+.|-+...+.|.+.+... -...+-+.|+|+.|+|||+||+.++... . + ..+.+..+..
T Consensus 125 ~~vgR~~~~~~l~~~l~~~-----------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 193 (1249)
T 3sfz_A 125 IFVTRKKLVHAIQQKLWKL-----------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKS 193 (1249)
T ss_dssp SCCCCHHHHHHHHHHHHTT-----------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHH
T ss_pred eeccHHHHHHHHHHHHhhc-----------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCch
Confidence 3556666666555543211 0122348899999999999999988752 1 1 2223332220
Q ss_pred --h-------hc---------ccCcchHHHHHHHHHHhhC--CCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHh
Q 004267 552 --L-------TM---------WFGESEANVREIFDKARQS--APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTE 611 (764)
Q Consensus 552 --~-------~~---------~~g~se~~i~~~f~~a~~~--~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ 611 (764)
. .. ........+...+...-.. .+.+|+||+++... .
T Consensus 194 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~-----------------------~ 250 (1249)
T 3sfz_A 194 GLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW-----------------------V 250 (1249)
T ss_dssp HHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH-----------------------H
T ss_pred HHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH-----------------------H
Confidence 0 00 0011122233333333233 37899999987531 1
Q ss_pred hcCCCCCCcEEEEecCCCCCCCCccCCCCCccceEEeecC-CCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCC
Q 004267 612 MDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPL-PDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGF 686 (764)
Q Consensus 612 ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~-p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~ 686 (764)
++.+. .+.-||.||..+....... .....+.+++ .+.++-.++|..+.....-.......++++.+.|.
T Consensus 251 ~~~~~--~~~~ilvTtR~~~~~~~~~----~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~gl 320 (1249)
T 3sfz_A 251 LKAFD--NQCQILLTTRDKSVTDSVM----GPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGS 320 (1249)
T ss_dssp HTTTC--SSCEEEEEESSTTTTTTCC----SCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTC
T ss_pred HHhhc--CCCEEEEEcCCHHHHHhhc----CCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCC
Confidence 12222 2335777777654432211 2345677775 88999999998877544332233466788888764
No 377
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.82 E-value=0.00068 Score=69.18 Aligned_cols=32 Identities=41% Similarity=0.514 Sum_probs=28.4
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCeEEEEec
Q 004267 244 GILLYGPPGSGKTLIARAVANETGAFFFCING 275 (764)
Q Consensus 244 ~vLL~GppGtGKTtLar~la~~l~~~~i~v~~ 275 (764)
.++|.||||||||||++.||+.++..++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 58999999999999999999999988776654
No 378
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.82 E-value=0.00066 Score=66.94 Aligned_cols=30 Identities=20% Similarity=0.378 Sum_probs=25.6
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHhC
Q 004267 238 GVKPPKGILLYGPPGSGKTLIARAVANETG 267 (764)
Q Consensus 238 ~i~~~~~vLL~GppGtGKTtLar~la~~l~ 267 (764)
.+.+++.+.|.||+|||||||+++|++.+.
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 567888999999999999999999999875
No 379
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.82 E-value=0.00073 Score=70.65 Aligned_cols=34 Identities=21% Similarity=0.483 Sum_probs=30.2
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHhCCe
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF 269 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~ 269 (764)
++.+++++.+.|+||+|||||||+++|++.+...
T Consensus 120 sl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~ 153 (305)
T 2v9p_A 120 LKGIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGS 153 (305)
T ss_dssp HHTCTTCSEEEEECSSSSSHHHHHHHHHHHHTCE
T ss_pred eEEecCCCEEEEECCCCCcHHHHHHHHhhhcCce
Confidence 5678999999999999999999999999988433
No 380
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.80 E-value=0.00076 Score=71.65 Aligned_cols=73 Identities=23% Similarity=0.305 Sum_probs=51.4
Q ss_pred CCCcceeeeCCCCCChhHHHHHHHHHhC--CeeEEEecccchh-----c---ccCcchHHHHHHHHHHhhCCCeEEEEec
Q 004267 513 SPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLT-----M---WFGESEANVREIFDKARQSAPCVLFFDE 582 (764)
Q Consensus 513 ~~~~gill~GppGtGKT~lak~lA~~~~--~~~i~v~~~~l~~-----~---~~g~se~~i~~~f~~a~~~~p~iifiDE 582 (764)
.+...+++.||+|+|||||++++++... ...+.+.+...+. . ++.......+..+..|-...|.++++||
T Consensus 169 ~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE 248 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGE 248 (330)
T ss_dssp HHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcC
Confidence 3445599999999999999999999753 4567776653211 1 2211234556677777788899999999
Q ss_pred ccc
Q 004267 583 LDS 585 (764)
Q Consensus 583 id~ 585 (764)
.-.
T Consensus 249 ~~~ 251 (330)
T 2pt7_A 249 LRS 251 (330)
T ss_dssp CCS
T ss_pred CCh
Confidence 754
No 381
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.80 E-value=0.0011 Score=83.02 Aligned_cols=32 Identities=22% Similarity=0.344 Sum_probs=28.6
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 267 (764)
++.+++++.+.|+||+|||||||+++|++...
T Consensus 410 sl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~ 441 (1284)
T 3g5u_A 410 NLKVKSGQTVALVGNSGCGKSTTVQLMQRLYD 441 (1284)
T ss_dssp EEEECTTCEEEEECCSSSSHHHHHHHTTTSSC
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45678999999999999999999999998764
No 382
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.79 E-value=0.00078 Score=71.34 Aligned_cols=113 Identities=15% Similarity=0.176 Sum_probs=64.4
Q ss_pred cCCCCcceeeeCCCCCChhHHHHHHHHHh---------------C----CeeEEEecccch--h---cc---cCc-----
Q 004267 511 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---------------Q----ANFISVKGPELL--T---MW---FGE----- 558 (764)
Q Consensus 511 ~~~~~~gill~GppGtGKT~lak~lA~~~---------------~----~~~i~v~~~~l~--~---~~---~g~----- 558 (764)
|+++..-++|+||||+|||++|..+|... + .+.+.++..+-+ . .+ .|.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~ 173 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTV 173 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHH
Confidence 55655669999999999999999998752 2 456666654421 0 00 010
Q ss_pred -----------ch---HHHHHHHHHHhh-CCCeEEEEecccchhhccCCCCCCCCcch--HHHHHHHHHhhcCCCCCCcE
Q 004267 559 -----------SE---ANVREIFDKARQ-SAPCVLFFDELDSIATQRGSSVGDAGGAA--DRVLNQLLTEMDGMSAKKTV 621 (764)
Q Consensus 559 -----------se---~~i~~~f~~a~~-~~p~iifiDEid~l~~~r~~~~~~~~~~~--~~~~~~lL~~ld~~~~~~~v 621 (764)
.+ ..+..+....+. ..+.+|++|.+..+......+. +... ...+.+++..|..+....++
T Consensus 174 ~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~---~~~~~r~~~~~~~~~~L~~la~~~~~ 250 (322)
T 2i1q_A 174 LDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGR---GKLAERQQKLGRHMATLNKLADLFNC 250 (322)
T ss_dssp HHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCT---TSHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHhcCC---ccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 11 112234444455 6788999999999875321110 1122 23456666666554433445
Q ss_pred EEEec
Q 004267 622 FIIGA 626 (764)
Q Consensus 622 ~vi~a 626 (764)
.||++
T Consensus 251 ~vi~~ 255 (322)
T 2i1q_A 251 VVLVT 255 (322)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 55554
No 383
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.79 E-value=0.0044 Score=69.31 Aligned_cols=76 Identities=17% Similarity=0.329 Sum_probs=48.2
Q ss_pred CCe-EEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCC--CCChhhhccCCcceEEEecCCC
Q 004267 301 APS-IIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPN--SIDPALRRFGRFDREIDIGVPD 377 (764)
Q Consensus 301 ~p~-il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~--~ld~al~r~~rf~~~i~i~~p~ 377 (764)
.|. +++|||+..++... ...+...+..+.. .....++.+|.+|++|. .++..++. .+...|.+...+
T Consensus 296 lP~ivlvIDE~~~ll~~~-------~~~~~~~l~~Lar-~gRa~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lrv~s 365 (512)
T 2ius_A 296 EPYIVVLVDEFADLMMTV-------GKKVEELIARLAQ-KARAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFTVSS 365 (512)
T ss_dssp CCEEEEEEETHHHHHHHH-------HHHHHHHHHHHHH-HCGGGTEEEEEEESCCCTTTSCHHHHH--HCCEEEEECCSS
T ss_pred CCcEEEEEeCHHHHHhhh-------hHHHHHHHHHHHH-HhhhCCcEEEEEecCCccccccHHHHh--hcCCeEEEEcCC
Confidence 454 78999997765311 1222222222222 22234677778888886 57887776 688888998888
Q ss_pred hHHHHHHHH
Q 004267 378 EVGRLEVLR 386 (764)
Q Consensus 378 ~~~R~~il~ 386 (764)
..+...++.
T Consensus 366 ~~dsr~ilg 374 (512)
T 2ius_A 366 KIDSRTILD 374 (512)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHhcC
Confidence 887776663
No 384
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.78 E-value=0.00081 Score=84.25 Aligned_cols=30 Identities=23% Similarity=0.392 Sum_probs=26.9
Q ss_pred hCCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 004267 237 IGVKPPKGILLYGPPGSGKTLIARAVANET 266 (764)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtLar~la~~l 266 (764)
+.+.+++.+.|+||+|||||||+++|++..
T Consensus 1054 l~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~ 1083 (1284)
T 3g5u_A 1054 LEVKKGQTLALVGSSGCGKSTVVQLLERFY 1083 (1284)
T ss_dssp EEECSSSEEEEECSSSTTHHHHHHHHTTSS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 456888999999999999999999999865
No 385
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.78 E-value=0.0027 Score=66.71 Aligned_cols=100 Identities=21% Similarity=0.272 Sum_probs=55.7
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCc
Q 004267 242 PKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTH 321 (764)
Q Consensus 242 ~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~ 321 (764)
+..|+|+||+|||||||++.||..++..++..+...+.....-.+.+.. .......|. .|+|..+... ....
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~qvy~~~~igTakp~----~~e~~gvph-~lid~~~~~~---~~~~ 76 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDSALIYRGMDIGTAKPS----RELLARYPH-RLIDIRDPAE---SYSA 76 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTTTBTTCCTTTTCCC----HHHHHHSCE-ETSSCBCTTS---CCCH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchhhhcCCCcccCCCC----HHHHcCCCE-EEeeccCccc---ccCH
Confidence 3579999999999999999999999988877765433221110000000 001123343 5666655432 1223
Q ss_pred hHHHHHHHHHHHHHhhcccCCCeEEEEEec
Q 004267 322 GEVERRIVSQLLTLMDGLKSRAHVIVIGAT 351 (764)
Q Consensus 322 ~~~~~~v~~~Ll~~ld~~~~~~~v~vI~at 351 (764)
..+.......+..+... ....+++=|+.
T Consensus 77 ~~F~~~a~~~i~~i~~~--g~~~IlvGGt~ 104 (323)
T 3crm_A 77 AEFRADALAAMAKATAR--GRIPLLVGGTM 104 (323)
T ss_dssp HHHHHHHHHHHHHHHHT--TCEEEEEESCH
T ss_pred HHHHHHHHHHHHHHHHc--CCeEEEECCch
Confidence 34444444444444433 34577777755
No 386
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.76 E-value=0.00096 Score=67.65 Aligned_cols=31 Identities=29% Similarity=0.537 Sum_probs=27.0
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCeEE
Q 004267 241 PPKGILLYGPPGSGKTLIARAVANETGAFFF 271 (764)
Q Consensus 241 ~~~~vLL~GppGtGKTtLar~la~~l~~~~i 271 (764)
.+..++|.|||||||||+++.|+..++...+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 3678999999999999999999998886543
No 387
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.76 E-value=0.00073 Score=65.23 Aligned_cols=30 Identities=37% Similarity=0.530 Sum_probs=26.0
Q ss_pred cceeeeCCCCCChhHHHHHHHHH-hCCeeEE
Q 004267 516 KGVLFYGPPGCGKTLLAKAIANE-CQANFIS 545 (764)
Q Consensus 516 ~gill~GppGtGKT~lak~lA~~-~~~~~i~ 545 (764)
..++|+|+|||||||+++.+|.. ++.+++.
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~l~g~~~id 41 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAELDGFQHLE 41 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSTTEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCEEee
Confidence 34999999999999999999998 6766654
No 388
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.75 E-value=0.0011 Score=63.01 Aligned_cols=30 Identities=30% Similarity=0.471 Sum_probs=26.6
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCeEEE
Q 004267 243 KGILLYGPPGSGKTLIARAVANETGAFFFC 272 (764)
Q Consensus 243 ~~vLL~GppGtGKTtLar~la~~l~~~~i~ 272 (764)
..|+|.|+|||||||+++.|+..++.+++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 369999999999999999999999977553
No 389
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.75 E-value=0.00091 Score=64.53 Aligned_cols=26 Identities=23% Similarity=0.380 Sum_probs=24.0
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhC
Q 004267 242 PKGILLYGPPGSGKTLIARAVANETG 267 (764)
Q Consensus 242 ~~~vLL~GppGtGKTtLar~la~~l~ 267 (764)
+..|+|.|+|||||||+++.|+..++
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45799999999999999999999887
No 390
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.75 E-value=0.0031 Score=70.18 Aligned_cols=23 Identities=22% Similarity=0.544 Sum_probs=21.5
Q ss_pred eEEEECCCCCCHHHHHHHHHHHh
Q 004267 244 GILLYGPPGSGKTLIARAVANET 266 (764)
Q Consensus 244 ~vLL~GppGtGKTtLar~la~~l 266 (764)
.++|.|+||||||+++.+++..+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998776
No 391
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.74 E-value=0.00097 Score=66.69 Aligned_cols=33 Identities=18% Similarity=0.305 Sum_probs=27.5
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCeEEE
Q 004267 240 KPPKGILLYGPPGSGKTLIARAVANETGAFFFC 272 (764)
Q Consensus 240 ~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~ 272 (764)
..+..|+|.|+|||||||+++.|+..++..++.
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 37 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFELKHLS 37 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSSSEEEE
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEe
Confidence 345679999999999999999999999876554
No 392
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.74 E-value=0.00074 Score=64.50 Aligned_cols=27 Identities=44% Similarity=0.539 Sum_probs=23.0
Q ss_pred CceEEEECCCCCCHHHHHHHHHH-HhCC
Q 004267 242 PKGILLYGPPGSGKTLIARAVAN-ETGA 268 (764)
Q Consensus 242 ~~~vLL~GppGtGKTtLar~la~-~l~~ 268 (764)
+..|+|.|+|||||||+++.|+. .++.
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~ 29 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGF 29 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTE
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCCc
Confidence 35699999999999999999998 4553
No 393
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.74 E-value=0.001 Score=62.99 Aligned_cols=29 Identities=41% Similarity=0.631 Sum_probs=25.3
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCeEEEE
Q 004267 244 GILLYGPPGSGKTLIARAVANETGAFFFCI 273 (764)
Q Consensus 244 ~vLL~GppGtGKTtLar~la~~l~~~~i~v 273 (764)
.|+|.|||||||||+++.| ..++..++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 5899999999999999999 8888876543
No 394
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.73 E-value=0.0027 Score=72.03 Aligned_cols=110 Identities=18% Similarity=0.200 Sum_probs=66.0
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh---CCeEEEEechh----hhhh---------------cc---------chh
Q 004267 238 GVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPE----IMSK---------------LA---------GES 286 (764)
Q Consensus 238 ~i~~~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~----l~~~---------------~~---------g~~ 286 (764)
++.++..++|.||||||||||++.+++.. +...+.+...+ +... .. -..
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~ 356 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGL 356 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCH
Confidence 67889999999999999999999999875 33333443221 1000 00 023
Q ss_pred HHHHHHHHHHHHhcCCeEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCC
Q 004267 287 ESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRP 354 (764)
Q Consensus 287 ~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~ 354 (764)
.+..+.++..+....|.++++|=+..+-... + + ......+..++..+... ++.+|.+++..
T Consensus 357 g~~q~~~~a~~l~~~p~llilDp~~~Ld~~~--~-~---~~~~~~i~~ll~~l~~~-g~tvilvsh~~ 417 (525)
T 1tf7_A 357 EDHLQIIKSEINDFKPARIAIDSLSALARGV--S-N---NAFRQFVIGVTGYAKQE-EITGLFTNTSD 417 (525)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEECHHHHTSSS--C-H---HHHHHHHHHHHHHHHHT-TCEEEEEEECS
T ss_pred HHHHHHHHHHHHhhCCCEEEEcChHHHHhhC--C-h---HHHHHHHHHHHHHHHhC-CCEEEEEECcc
Confidence 4566777888888999999999444443321 1 1 11344445555544433 34445555554
No 395
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.73 E-value=0.00088 Score=67.94 Aligned_cols=32 Identities=22% Similarity=0.242 Sum_probs=26.4
Q ss_pred hCCCCCceEEEECCCCCCHHHHHHHHHHHhCC
Q 004267 237 IGVKPPKGILLYGPPGSGKTLIARAVANETGA 268 (764)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtLar~la~~l~~ 268 (764)
+.+.++..|.|.||+|||||||++.|++.+|.
T Consensus 20 l~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~ 51 (245)
T 2jeo_A 20 FQSMRPFLIGVSGGTASGKSTVCEKIMELLGQ 51 (245)
T ss_dssp ---CCSEEEEEECSTTSSHHHHHHHHHHHHTG
T ss_pred ccCCCCEEEEEECCCCCCHHHHHHHHHHHhch
Confidence 45567778999999999999999999998864
No 396
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.73 E-value=0.0023 Score=64.57 Aligned_cols=37 Identities=27% Similarity=0.332 Sum_probs=28.3
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHH----hCCeEEEEe
Q 004267 238 GVKPPKGILLYGPPGSGKTLIARAVANE----TGAFFFCIN 274 (764)
Q Consensus 238 ~i~~~~~vLL~GppGtGKTtLar~la~~----l~~~~i~v~ 274 (764)
|++++.-++|+|+||+|||+|+..+|.. .+..++.++
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s 66 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeec
Confidence 5788899999999999999999876533 244554444
No 397
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.73 E-value=0.0054 Score=64.64 Aligned_cols=37 Identities=24% Similarity=0.222 Sum_probs=30.3
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh---CCeEEEEe
Q 004267 238 GVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCIN 274 (764)
Q Consensus 238 ~i~~~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~ 274 (764)
|+.++.-++|.|+||+|||+|+..+|... +.+++.++
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s 103 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 103 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 68899999999999999999999988654 34555554
No 398
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.73 E-value=0.00071 Score=64.93 Aligned_cols=30 Identities=30% Similarity=0.375 Sum_probs=23.3
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCeEE
Q 004267 242 PKGILLYGPPGSGKTLIARAVANETGAFFF 271 (764)
Q Consensus 242 ~~~vLL~GppGtGKTtLar~la~~l~~~~i 271 (764)
+..|+|.|+|||||||+++.|+..++..++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 457999999999999999999999998766
No 399
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.70 E-value=0.0014 Score=63.28 Aligned_cols=31 Identities=26% Similarity=0.513 Sum_probs=27.1
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCeEEE
Q 004267 242 PKGILLYGPPGSGKTLIARAVANETGAFFFC 272 (764)
Q Consensus 242 ~~~vLL~GppGtGKTtLar~la~~l~~~~i~ 272 (764)
+..|+|.|+|||||||+++.|+..++..++.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~ 36 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLS 36 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEee
Confidence 4679999999999999999999999866543
No 400
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.70 E-value=0.00088 Score=68.34 Aligned_cols=31 Identities=35% Similarity=0.482 Sum_probs=28.0
Q ss_pred eeeeCCCCCChhHHHHHHHHHhCCeeEEEec
Q 004267 518 VLFYGPPGCGKTLLAKAIANECQANFISVKG 548 (764)
Q Consensus 518 ill~GppGtGKT~lak~lA~~~~~~~i~v~~ 548 (764)
++|.|||||||||+|+.||..++..++..+.
T Consensus 4 i~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 7899999999999999999999988876654
No 401
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.70 E-value=0.0017 Score=74.19 Aligned_cols=32 Identities=31% Similarity=0.414 Sum_probs=25.0
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHh---CCeEEEE
Q 004267 242 PKGILLYGPPGSGKTLIARAVANET---GAFFFCI 273 (764)
Q Consensus 242 ~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v 273 (764)
...++|.|||||||||++.+++..+ +..+...
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ 238 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLC 238 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 4579999999999999999998754 4444433
No 402
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.69 E-value=0.0014 Score=66.47 Aligned_cols=33 Identities=24% Similarity=0.391 Sum_probs=28.5
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCeEEE
Q 004267 240 KPPKGILLYGPPGSGKTLIARAVANETGAFFFC 272 (764)
Q Consensus 240 ~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~ 272 (764)
.++..|+|.|||||||||+++.|+..++..++.
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is 59 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLS 59 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 356789999999999999999999999876553
No 403
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.69 E-value=0.0012 Score=64.18 Aligned_cols=31 Identities=29% Similarity=0.402 Sum_probs=27.1
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCeEEE
Q 004267 242 PKGILLYGPPGSGKTLIARAVANETGAFFFC 272 (764)
Q Consensus 242 ~~~vLL~GppGtGKTtLar~la~~l~~~~i~ 272 (764)
+..|+|.|+|||||||+++.|+..++..++.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 42 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLS 42 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 4679999999999999999999999865543
No 404
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.69 E-value=0.0013 Score=65.57 Aligned_cols=30 Identities=27% Similarity=0.447 Sum_probs=26.4
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCeEE
Q 004267 242 PKGILLYGPPGSGKTLIARAVANETGAFFF 271 (764)
Q Consensus 242 ~~~vLL~GppGtGKTtLar~la~~l~~~~i 271 (764)
+..|.|.||+||||||+++.|++.++.+++
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~ 34 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLL 34 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 357999999999999999999999987654
No 405
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.69 E-value=0.00063 Score=72.19 Aligned_cols=30 Identities=30% Similarity=0.519 Sum_probs=26.2
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCeEEE
Q 004267 243 KGILLYGPPGSGKTLIARAVANETGAFFFC 272 (764)
Q Consensus 243 ~~vLL~GppGtGKTtLar~la~~l~~~~i~ 272 (764)
..++|+|||||||||++++||+.++..|+.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 359999999999999999999998876643
No 406
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.68 E-value=0.003 Score=70.02 Aligned_cols=38 Identities=21% Similarity=0.176 Sum_probs=30.6
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh----CCeEEEEec
Q 004267 238 GVKPPKGILLYGPPGSGKTLIARAVANET----GAFFFCING 275 (764)
Q Consensus 238 ~i~~~~~vLL~GppGtGKTtLar~la~~l----~~~~i~v~~ 275 (764)
|+.++.-++|.|+||+|||+|+..+|... +.+++.++.
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 68899999999999999999999887653 445555553
No 407
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.68 E-value=0.0029 Score=69.25 Aligned_cols=70 Identities=21% Similarity=0.366 Sum_probs=44.0
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCC---eEEEEechhhhhh--------ccchhHHHHHHHHHHHHhcCCeEEEEcc
Q 004267 241 PPKGILLYGPPGSGKTLIARAVANETGA---FFFCINGPEIMSK--------LAGESESNLRKAFEEAEKNAPSIIFIDE 309 (764)
Q Consensus 241 ~~~~vLL~GppGtGKTtLar~la~~l~~---~~i~v~~~~l~~~--------~~g~~~~~l~~vf~~a~~~~p~il~iDE 309 (764)
++..++|.||+||||||+++++++.++. .++.+. ..+... ......-.....+..+..+.|.++++.|
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~e-d~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgE 244 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVE-DPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGE 244 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEE-SSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESC
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEec-ccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcC
Confidence 4566999999999999999999998853 233332 221100 0001111233445566668899999998
Q ss_pred cc
Q 004267 310 ID 311 (764)
Q Consensus 310 id 311 (764)
+.
T Consensus 245 iR 246 (418)
T 1p9r_A 245 IR 246 (418)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 408
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.68 E-value=0.0054 Score=67.15 Aligned_cols=72 Identities=25% Similarity=0.204 Sum_probs=45.3
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHh---CCeEEEEechhh----------hhhc---------cc-hhHHHHHHHHHHH
Q 004267 241 PPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEI----------MSKL---------AG-ESESNLRKAFEEA 297 (764)
Q Consensus 241 ~~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l----------~~~~---------~g-~~~~~l~~vf~~a 297 (764)
++..+++.||+|+||||++..||..+ +..+..+++... .... .+ .........++.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 46789999999999999999998766 555555543211 0000 00 1122234455555
Q ss_pred HhcCCeEEEEccccc
Q 004267 298 EKNAPSIIFIDEIDS 312 (764)
Q Consensus 298 ~~~~p~il~iDEid~ 312 (764)
....+.++++|....
T Consensus 176 ~~~~~DvvIIDTaGr 190 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGR 190 (433)
T ss_dssp TTTTCSEEEEEECCC
T ss_pred HhcCCCEEEEECCCC
Confidence 556789999998643
No 409
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.68 E-value=0.0011 Score=63.70 Aligned_cols=29 Identities=21% Similarity=0.518 Sum_probs=26.5
Q ss_pred ceeeeCCCCCChhHHHHHHHHHhCCeeEE
Q 004267 517 GVLFYGPPGCGKTLLAKAIANECQANFIS 545 (764)
Q Consensus 517 gill~GppGtGKT~lak~lA~~~~~~~i~ 545 (764)
-++|.|+|||||||+|+.||..++.+++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLD 32 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEe
Confidence 48999999999999999999999988764
No 410
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.67 E-value=0.0011 Score=63.75 Aligned_cols=27 Identities=22% Similarity=0.388 Sum_probs=24.3
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC
Q 004267 241 PPKGILLYGPPGSGKTLIARAVANETG 267 (764)
Q Consensus 241 ~~~~vLL~GppGtGKTtLar~la~~l~ 267 (764)
+++.+.|+||+|+|||||++.|++...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 467799999999999999999999865
No 411
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.67 E-value=0.0017 Score=63.52 Aligned_cols=38 Identities=21% Similarity=0.218 Sum_probs=29.0
Q ss_pred CCcceeeeCCCCCChhHHHHHHHHHh---CCeeEEEecccc
Q 004267 514 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPEL 551 (764)
Q Consensus 514 ~~~gill~GppGtGKT~lak~lA~~~---~~~~i~v~~~~l 551 (764)
++.-+.|.||+||||||+++++|+.+ +...+.+++.++
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 34458899999999999999999987 443346666554
No 412
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=96.66 E-value=0.0019 Score=70.88 Aligned_cols=30 Identities=23% Similarity=0.314 Sum_probs=25.5
Q ss_pred hCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Q 004267 237 IGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (764)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 267 (764)
+.+.++ .++|+||+|+|||||+++|+..++
T Consensus 56 l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~ 85 (415)
T 4aby_A 56 LELGGG-FCAFTGETGAGKSIIVDALGLLLG 85 (415)
T ss_dssp EECCSS-EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred EecCCC-cEEEECCCCCCHHHHHHHHHHHhC
Confidence 456677 899999999999999999976664
No 413
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.66 E-value=0.0015 Score=65.60 Aligned_cols=32 Identities=28% Similarity=0.414 Sum_probs=27.8
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCeEEE
Q 004267 241 PPKGILLYGPPGSGKTLIARAVANETGAFFFC 272 (764)
Q Consensus 241 ~~~~vLL~GppGtGKTtLar~la~~l~~~~i~ 272 (764)
.+..|+|.|+|||||||+++.|+..++..++.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 46 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLA 46 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 34679999999999999999999999976554
No 414
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.66 E-value=0.00099 Score=65.23 Aligned_cols=28 Identities=25% Similarity=0.417 Sum_probs=25.1
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHh
Q 004267 239 VKPPKGILLYGPPGSGKTLIARAVANET 266 (764)
Q Consensus 239 i~~~~~vLL~GppGtGKTtLar~la~~l 266 (764)
+.++..++|.|||||||||+++.|++.+
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4667889999999999999999999977
No 415
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.65 E-value=0.0034 Score=65.55 Aligned_cols=36 Identities=28% Similarity=0.309 Sum_probs=28.0
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh----CCeEEEEec
Q 004267 240 KPPKGILLYGPPGSGKTLIARAVANET----GAFFFCING 275 (764)
Q Consensus 240 ~~~~~vLL~GppGtGKTtLar~la~~l----~~~~i~v~~ 275 (764)
.++..++|+||+|+||||++..||+.+ |..+..+++
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~ 142 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITT 142 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEEC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 356789999999999999999999765 334555543
No 416
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.65 E-value=0.0013 Score=64.47 Aligned_cols=35 Identities=26% Similarity=0.414 Sum_probs=28.2
Q ss_pred CcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccc
Q 004267 515 SKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 551 (764)
Q Consensus 515 ~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l 551 (764)
+.-++|.|||||||||+++++++.++. +.+++.++
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~g~--~~i~~d~~ 63 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADETGL--EFAEADAF 63 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHCC--EEEEGGGG
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCC--eEEccccc
Confidence 345899999999999999999999864 45566554
No 417
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.63 E-value=0.0011 Score=66.04 Aligned_cols=31 Identities=19% Similarity=0.343 Sum_probs=27.1
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCeEE
Q 004267 241 PPKGILLYGPPGSGKTLIARAVANETGAFFF 271 (764)
Q Consensus 241 ~~~~vLL~GppGtGKTtLar~la~~l~~~~i 271 (764)
.+..|+|.|||||||||+++.|+..++..++
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i 34 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHI 34 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 3567999999999999999999999987544
No 418
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.63 E-value=0.0016 Score=63.74 Aligned_cols=33 Identities=18% Similarity=0.323 Sum_probs=27.9
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCeEEEE
Q 004267 241 PPKGILLYGPPGSGKTLIARAVANETGAFFFCI 273 (764)
Q Consensus 241 ~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v 273 (764)
.+..|+|.|+|||||||+++.|+..++..++..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~ 46 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSA 46 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence 345799999999999999999999998755543
No 419
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.62 E-value=0.0029 Score=64.72 Aligned_cols=36 Identities=22% Similarity=0.381 Sum_probs=29.7
Q ss_pred ceeeeCCCCCChhHHHHHHHHH---hCCeeEEEecccch
Q 004267 517 GVLFYGPPGCGKTLLAKAIANE---CQANFISVKGPELL 552 (764)
Q Consensus 517 gill~GppGtGKT~lak~lA~~---~~~~~i~v~~~~l~ 552 (764)
-++|.|+|||||||+|+.++.. .+..++.++...+.
T Consensus 6 lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~ 44 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR 44 (260)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHH
Confidence 4899999999999999999997 67777766665443
No 420
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.62 E-value=0.00082 Score=75.62 Aligned_cols=91 Identities=19% Similarity=0.245 Sum_probs=0.0
Q ss_pred HHHHHHccccChhhhh--hhCCCCCceEEEECCCCCCHHHHHHHHHHHh--CCeEEEEechh------------hhhhcc
Q 004267 220 IRELVELPLRHPQLFK--SIGVKPPKGILLYGPPGSGKTLIARAVANET--GAFFFCINGPE------------IMSKLA 283 (764)
Q Consensus 220 l~e~i~~~l~~~~~~~--~l~i~~~~~vLL~GppGtGKTtLar~la~~l--~~~~i~v~~~~------------l~~~~~ 283 (764)
+.+++.+-...++..+ ++.+..+.+++|.||+||||||+++++++.+ ....+.+.++. ......
T Consensus 236 ~~~l~~~G~~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~ 315 (511)
T 2oap_1 236 PIDLIEKGTVPSGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGM 315 (511)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCS
T ss_pred hhhHHhcCCCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeeccc
Q ss_pred chhHHHHHHHHHHHHhcCCeEEEEccc
Q 004267 284 GESESNLRKAFEEAEKNAPSIIFIDEI 310 (764)
Q Consensus 284 g~~~~~l~~vf~~a~~~~p~il~iDEi 310 (764)
+...-.+...+..+..+.|.++++.|+
T Consensus 316 ~~~~~~~~~~l~~~LR~~PD~iivgEi 342 (511)
T 2oap_1 316 GEGEIDMYDLLRAALRQRPDYIIVGEV 342 (511)
T ss_dssp SSCCBCHHHHHHTTGGGCCSEEEESCC
T ss_pred ccCCcCHHHHHHHhhccCCCeEEeCCc
No 421
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.61 E-value=0.0012 Score=62.59 Aligned_cols=31 Identities=19% Similarity=0.352 Sum_probs=27.7
Q ss_pred cceeeeCCCCCChhHHHHHHHHHhCCeeEEE
Q 004267 516 KGVLFYGPPGCGKTLLAKAIANECQANFISV 546 (764)
Q Consensus 516 ~gill~GppGtGKT~lak~lA~~~~~~~i~v 546 (764)
..++|.|+|||||||+++.||..++.+++..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 3589999999999999999999999888653
No 422
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.61 E-value=0.0012 Score=65.57 Aligned_cols=39 Identities=23% Similarity=0.436 Sum_probs=30.5
Q ss_pred CCCcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccchh
Q 004267 513 SPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 553 (764)
Q Consensus 513 ~~~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~~ 553 (764)
+.++-++|.||||+||+|.|+.||..++.+. ++..+++.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~~h--IstGdllR 65 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHFNH--LSSGDLLR 65 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHCCEE--ECHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHCCce--EcHHHHHH
Confidence 3445688999999999999999999987554 55555553
No 423
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.61 E-value=0.0016 Score=61.52 Aligned_cols=29 Identities=24% Similarity=0.299 Sum_probs=26.0
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCeEEE
Q 004267 244 GILLYGPPGSGKTLIARAVANETGAFFFC 272 (764)
Q Consensus 244 ~vLL~GppGtGKTtLar~la~~l~~~~i~ 272 (764)
.|+|.|+|||||||+++.|+..++..++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 30 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYD 30 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 58999999999999999999999977653
No 424
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.60 E-value=0.0012 Score=65.11 Aligned_cols=28 Identities=29% Similarity=0.463 Sum_probs=25.7
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhC
Q 004267 240 KPPKGILLYGPPGSGKTLIARAVANETG 267 (764)
Q Consensus 240 ~~~~~vLL~GppGtGKTtLar~la~~l~ 267 (764)
.++..+.|.||||||||||++.|++.+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5678899999999999999999999875
No 425
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.60 E-value=0.0023 Score=76.76 Aligned_cols=31 Identities=23% Similarity=0.438 Sum_probs=27.8
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANET 266 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l 266 (764)
++.+.++..+.|+||+|+|||||++.|++.+
T Consensus 693 Sl~I~~GeivaIiGpNGSGKSTLLklLaGll 723 (986)
T 2iw3_A 693 NFQCSLSSRIAVIGPNGAGKSTLINVLTGEL 723 (986)
T ss_dssp EEEEETTCEEEECSCCCHHHHHHHHHHTTSS
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4567889999999999999999999999865
No 426
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.60 E-value=0.0015 Score=64.42 Aligned_cols=34 Identities=35% Similarity=0.650 Sum_probs=27.8
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhhh
Q 004267 244 GILLYGPPGSGKTLIARAVANETGAFFFCINGPEIM 279 (764)
Q Consensus 244 ~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~ 279 (764)
.|+|.|||||||+|.|+.|+..++... ++..+++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~--istGdll 35 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVH--ISTGDIL 35 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEE--EEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeE--EcHHHHH
Confidence 488999999999999999999998765 4444444
No 427
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.60 E-value=0.0014 Score=64.87 Aligned_cols=30 Identities=23% Similarity=0.445 Sum_probs=26.0
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCeEEEE
Q 004267 244 GILLYGPPGSGKTLIARAVANETGAFFFCI 273 (764)
Q Consensus 244 ~vLL~GppGtGKTtLar~la~~l~~~~i~v 273 (764)
.|+|.|||||||||+++.|+..++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 489999999999999999999998765543
No 428
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=96.60 E-value=0.0032 Score=75.41 Aligned_cols=107 Identities=12% Similarity=0.103 Sum_probs=54.8
Q ss_pred cceeeeCCCCCChhHHHHHHHHH-----hCCe----eEE----------EecccchhcccCcchHHHHHHHHHHh-hCCC
Q 004267 516 KGVLFYGPPGCGKTLLAKAIANE-----CQAN----FIS----------VKGPELLTMWFGESEANVREIFDKAR-QSAP 575 (764)
Q Consensus 516 ~gill~GppGtGKT~lak~lA~~-----~~~~----~i~----------v~~~~l~~~~~g~se~~i~~~f~~a~-~~~p 575 (764)
.-++|.||||+||||+.|.++.. .+.. ... +...+.+....+......+++-.-++ ...|
T Consensus 674 ~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d~i~~~ig~~d~l~~~~stfs~em~~~~~il~~a~~p 753 (918)
T 3thx_B 674 RVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRKATSQ 753 (918)
T ss_dssp CEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCSEEEEEC----------CCHHHHHHHHHHHHHHCCTT
T ss_pred eEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHHHHHHhCChHHHHHHhHHHhhHHHHHHHHHHHhccCC
Confidence 44899999999999999998753 1210 011 11111111111111111222222221 4678
Q ss_pred eEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCCCCC
Q 004267 576 CVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIID 634 (764)
Q Consensus 576 ~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld 634 (764)
+++++||.-+.... .....+...++..+.. ..+..+|++|+..+..+
T Consensus 754 ~LlLLDEP~~GlD~---------~~~~~i~~~il~~L~~---~~g~tvl~vTH~~el~~ 800 (918)
T 3thx_B 754 SLVILDELGRGTST---------HDGIAIAYATLEYFIR---DVKSLTLFVTHYPPVCE 800 (918)
T ss_dssp CEEEEESTTTTSCH---------HHHHHHHHHHHHHHHH---TTCCEEEEECSCGGGGG
T ss_pred CEEEEeCCCCCCCH---------HHHHHHHHHHHHHHHH---hcCCeEEEEeCcHHHHH
Confidence 99999998663321 1233444466665521 12457788888766543
No 429
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.60 E-value=0.0015 Score=64.64 Aligned_cols=30 Identities=27% Similarity=0.392 Sum_probs=26.1
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCeEEEE
Q 004267 244 GILLYGPPGSGKTLIARAVANETGAFFFCI 273 (764)
Q Consensus 244 ~vLL~GppGtGKTtLar~la~~l~~~~i~v 273 (764)
.|+|.|||||||||+++.|+..++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 489999999999999999999998765543
No 430
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.59 E-value=0.0016 Score=66.33 Aligned_cols=32 Identities=25% Similarity=0.364 Sum_probs=27.9
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCeEE
Q 004267 240 KPPKGILLYGPPGSGKTLIARAVANETGAFFF 271 (764)
Q Consensus 240 ~~~~~vLL~GppGtGKTtLar~la~~l~~~~i 271 (764)
.++..|.|.||+||||||+++.|+..++..++
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 34567999999999999999999999987654
No 431
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.57 E-value=0.0013 Score=62.12 Aligned_cols=29 Identities=38% Similarity=0.555 Sum_probs=25.0
Q ss_pred ceeeeCCCCCChhHHHHHHHHHhCCeeEEE
Q 004267 517 GVLFYGPPGCGKTLLAKAIANECQANFISV 546 (764)
Q Consensus 517 gill~GppGtGKT~lak~lA~~~~~~~i~v 546 (764)
-++|.|||||||||+|+.+ ...+.+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 3789999999999999999 8888777653
No 432
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.57 E-value=0.0013 Score=63.33 Aligned_cols=29 Identities=41% Similarity=0.661 Sum_probs=25.4
Q ss_pred ceeeeCCCCCChhHHHHHHHHHhCCeeEE
Q 004267 517 GVLFYGPPGCGKTLLAKAIANECQANFIS 545 (764)
Q Consensus 517 gill~GppGtGKT~lak~lA~~~~~~~i~ 545 (764)
-++|.|+|||||||+++.+|..++.+++.
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l~~~~i~ 34 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQELGFKKLS 34 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 48999999999999999999998866543
No 433
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.56 E-value=0.0014 Score=64.95 Aligned_cols=32 Identities=28% Similarity=0.484 Sum_probs=27.6
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCeEEEE
Q 004267 242 PKGILLYGPPGSGKTLIARAVANETGAFFFCI 273 (764)
Q Consensus 242 ~~~vLL~GppGtGKTtLar~la~~l~~~~i~v 273 (764)
+..|+|.|+|||||||+++.|+..++..++..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 35699999999999999999999998766543
No 434
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.56 E-value=0.0074 Score=63.80 Aligned_cols=28 Identities=36% Similarity=0.386 Sum_probs=25.4
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHh
Q 004267 239 VKPPKGILLYGPPGSGKTLIARAVANET 266 (764)
Q Consensus 239 i~~~~~vLL~GppGtGKTtLar~la~~l 266 (764)
..++..++|+||+|+||||+++.||+.+
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3568889999999999999999999876
No 435
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.56 E-value=0.0012 Score=64.68 Aligned_cols=27 Identities=30% Similarity=0.669 Sum_probs=23.3
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC
Q 004267 241 PPKGILLYGPPGSGKTLIARAVANETG 267 (764)
Q Consensus 241 ~~~~vLL~GppGtGKTtLar~la~~l~ 267 (764)
+++.+.|+||+|+|||||++.|++...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 567899999999999999999999874
No 436
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.55 E-value=0.0016 Score=62.09 Aligned_cols=34 Identities=29% Similarity=0.495 Sum_probs=27.2
Q ss_pred cceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccc
Q 004267 516 KGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 551 (764)
Q Consensus 516 ~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l 551 (764)
.-++|.||||+||||+++.+++.++..+ +++.++
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~g~~~--i~~d~~ 42 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQLHAAF--LDGDFL 42 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHTCEE--EEGGGG
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhhCcEE--EeCccc
Confidence 3489999999999999999999887544 455444
No 437
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.54 E-value=0.0016 Score=64.71 Aligned_cols=31 Identities=26% Similarity=0.517 Sum_probs=27.0
Q ss_pred cceeeeCCCCCChhHHHHHHHHHhCCeeEEE
Q 004267 516 KGVLFYGPPGCGKTLLAKAIANECQANFISV 546 (764)
Q Consensus 516 ~gill~GppGtGKT~lak~lA~~~~~~~i~v 546 (764)
.-++|.|+|||||||+++.||..++.+++..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 3489999999999999999999998776543
No 438
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.54 E-value=0.018 Score=64.85 Aligned_cols=73 Identities=16% Similarity=0.290 Sum_probs=49.3
Q ss_pred eEEEEccccccCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCC--CCChhhhccCCcceEEEecCCChHH
Q 004267 303 SIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPN--SIDPALRRFGRFDREIDIGVPDEVG 380 (764)
Q Consensus 303 ~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~--~ld~al~r~~rf~~~i~i~~p~~~~ 380 (764)
-+++|||++.++.... +.+...|..++..- ...++.+|.+|.+|. .++..++. .|...|.+...+..+
T Consensus 345 ivvVIDE~~~L~~~~~-------~~~~~~L~~Iar~G-Ra~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~s~~D 414 (574)
T 2iut_A 345 IVVVVDEFADMMMIVG-------KKVEELIARIAQKA-RAAGIHLILATQRPSVDVITGLIKA--NIPTRIAFQVSSKID 414 (574)
T ss_dssp EEEEESCCTTHHHHTC-------HHHHHHHHHHHHHC-TTTTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCSCHHH
T ss_pred EEEEEeCHHHHhhhhh-------HHHHHHHHHHHHHH-hhCCeEEEEEecCcccccccHHHHh--hhccEEEEEcCCHHH
Confidence 4789999998764321 12223333333322 345788888899887 78888877 688888898888777
Q ss_pred HHHHH
Q 004267 381 RLEVL 385 (764)
Q Consensus 381 R~~il 385 (764)
...++
T Consensus 415 sr~IL 419 (574)
T 2iut_A 415 SRTIL 419 (574)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 66665
No 439
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.54 E-value=0.0017 Score=63.59 Aligned_cols=30 Identities=33% Similarity=0.634 Sum_probs=26.3
Q ss_pred cceeeeCCCCCChhHHHHHHHHHhCCeeEE
Q 004267 516 KGVLFYGPPGCGKTLLAKAIANECQANFIS 545 (764)
Q Consensus 516 ~gill~GppGtGKT~lak~lA~~~~~~~i~ 545 (764)
.-++|.|+||+||||+|+.|+..++..++.
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 459999999999999999999999866654
No 440
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.54 E-value=0.0015 Score=61.86 Aligned_cols=29 Identities=24% Similarity=0.596 Sum_probs=26.3
Q ss_pred ceeeeCCCCCChhHHHHHHHHHhCCeeEE
Q 004267 517 GVLFYGPPGCGKTLLAKAIANECQANFIS 545 (764)
Q Consensus 517 gill~GppGtGKT~lak~lA~~~~~~~i~ 545 (764)
-++|.|+|||||||+|+.+|..++.+++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 48999999999999999999999987764
No 441
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.54 E-value=0.0091 Score=62.21 Aligned_cols=25 Identities=32% Similarity=0.502 Sum_probs=21.8
Q ss_pred CcceeeeCCCCCChhHHHHHHHHHh
Q 004267 515 SKGVLFYGPPGCGKTLLAKAIANEC 539 (764)
Q Consensus 515 ~~gill~GppGtGKT~lak~lA~~~ 539 (764)
+.-++|.||+|+||||++..+|..+
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4458999999999999999999864
No 442
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=96.53 E-value=0.00075 Score=79.02 Aligned_cols=27 Identities=26% Similarity=0.373 Sum_probs=23.4
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHH
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAV 262 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~l 262 (764)
++.+.+++.+.|+||+|||||||++++
T Consensus 342 sl~I~~Ge~vaIiGpnGsGKSTLl~~i 368 (670)
T 3ux8_A 342 SVKIPLGTFVAVTGVSGSGKSTLVNEV 368 (670)
T ss_dssp EEEEETTSEEEEECSTTSSHHHHHTTT
T ss_pred eeEecCCCEEEEEeeCCCCHHHHHHHH
Confidence 456778899999999999999999764
No 443
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=96.53 E-value=0.0053 Score=74.63 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=20.8
Q ss_pred CceEEEECCCCCCHHHHHHHHHHH
Q 004267 242 PKGILLYGPPGSGKTLIARAVANE 265 (764)
Q Consensus 242 ~~~vLL~GppGtGKTtLar~la~~ 265 (764)
++.++|+||+|+||||++|.+ +.
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i-Gl 811 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA-GL 811 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH-HH
T ss_pred CcEEEEECCCCCChHHHHHHH-HH
Confidence 578999999999999999999 54
No 444
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.52 E-value=0.0058 Score=67.69 Aligned_cols=30 Identities=33% Similarity=0.389 Sum_probs=26.6
Q ss_pred hCCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 004267 237 IGVKPPKGILLYGPPGSGKTLIARAVANET 266 (764)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtLar~la~~l 266 (764)
+.+..+..++|+||+|||||||++.|++.+
T Consensus 288 l~i~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 288 VEGKAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp CCSCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eeccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 445678889999999999999999999976
No 445
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.52 E-value=0.0015 Score=64.29 Aligned_cols=33 Identities=36% Similarity=0.622 Sum_probs=27.5
Q ss_pred eeeeCCCCCChhHHHHHHHHHhCCeeEEEecccch
Q 004267 518 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 552 (764)
Q Consensus 518 ill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l~ 552 (764)
++|.||||+||+|.|+.||...+.+. ++..+++
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~~~--istGdll 35 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGFVH--ISTGDIL 35 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEE--EEHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeE--EcHHHHH
Confidence 78999999999999999999998665 4555554
No 446
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.52 E-value=0.0015 Score=63.32 Aligned_cols=32 Identities=22% Similarity=0.376 Sum_probs=27.5
Q ss_pred CcceeeeCCCCCChhHHHHHHHHHhCCeeEEE
Q 004267 515 SKGVLFYGPPGCGKTLLAKAIANECQANFISV 546 (764)
Q Consensus 515 ~~gill~GppGtGKT~lak~lA~~~~~~~i~v 546 (764)
+.-++|.|+|||||||+++.||..++.+++..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 34599999999999999999999998776644
No 447
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.51 E-value=0.0018 Score=63.34 Aligned_cols=30 Identities=40% Similarity=0.557 Sum_probs=26.7
Q ss_pred ceeeeCCCCCChhHHHHHHHHHhCCeeEEE
Q 004267 517 GVLFYGPPGCGKTLLAKAIANECQANFISV 546 (764)
Q Consensus 517 gill~GppGtGKT~lak~lA~~~~~~~i~v 546 (764)
-++|.|+|||||||+|+.|+..++.+++..
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 489999999999999999999998876554
No 448
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.51 E-value=0.0099 Score=57.56 Aligned_cols=101 Identities=18% Similarity=0.183 Sum_probs=60.0
Q ss_pred ceeeeCCCCCChhHHHHHHHHHh---CCeeEEE---ecc------cchhcc-----------cCc------chHHHHHHH
Q 004267 517 GVLFYGPPGCGKTLLAKAIANEC---QANFISV---KGP------ELLTMW-----------FGE------SEANVREIF 567 (764)
Q Consensus 517 gill~GppGtGKT~lak~lA~~~---~~~~i~v---~~~------~l~~~~-----------~g~------se~~i~~~f 567 (764)
.+++|+++|.||||+|-.+|-.. |.....+ ++. +++... .-. .+......+
T Consensus 30 ~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~l 109 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAVW 109 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHHH
Confidence 39999999999999999998753 5555555 431 233322 101 123455666
Q ss_pred HHHhh----CCCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCC
Q 004267 568 DKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRP 630 (764)
Q Consensus 568 ~~a~~----~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~ 630 (764)
+.++. ....+|++||+-.....+-- ..+. ++..+..- ..++-||.|+|.+
T Consensus 110 ~~a~~~l~~~~yDlvILDEi~~al~~g~l-------~~~e----v~~~l~~R--p~~~~vIlTGr~a 163 (196)
T 1g5t_A 110 QHGKRMLADPLLDMVVLDELTYMVAYDYL-------PLEE----VISALNAR--PGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHTTCTTCSEEEEETHHHHHHTTSS-------CHHH----HHHHHHTS--CTTCEEEEECSSC
T ss_pred HHHHHHHhcCCCCEEEEeCCCccccCCCC-------CHHH----HHHHHHhC--cCCCEEEEECCCC
Confidence 66654 44789999999765443211 1223 34444432 3345677788764
No 449
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.49 E-value=0.0028 Score=63.16 Aligned_cols=68 Identities=19% Similarity=0.180 Sum_probs=42.9
Q ss_pred eeeeCCCCCChhHHHHHHHHHh---CCeeEEEeccc-------chhcccCcc-----hHHHHHHHHHHhh----CCCeEE
Q 004267 518 VLFYGPPGCGKTLLAKAIANEC---QANFISVKGPE-------LLTMWFGES-----EANVREIFDKARQ----SAPCVL 578 (764)
Q Consensus 518 ill~GppGtGKT~lak~lA~~~---~~~~i~v~~~~-------l~~~~~g~s-----e~~i~~~f~~a~~----~~p~ii 578 (764)
++++||+|+||||++..++... +...+.+++.. +.+. .|.. ......+++.++. ..+.+|
T Consensus 15 ~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~~dvV 93 (223)
T 2b8t_A 15 EFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDETKVI 93 (223)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTTCCEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCCCCEE
Confidence 7889999999999998887754 44555553221 1111 1211 0122456666654 357899
Q ss_pred EEecccch
Q 004267 579 FFDELDSI 586 (764)
Q Consensus 579 fiDEid~l 586 (764)
++||+..+
T Consensus 94 iIDEaQ~l 101 (223)
T 2b8t_A 94 GIDEVQFF 101 (223)
T ss_dssp EECSGGGS
T ss_pred EEecCccC
Confidence 99999875
No 450
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.49 E-value=0.0015 Score=64.26 Aligned_cols=28 Identities=39% Similarity=0.449 Sum_probs=25.1
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhC
Q 004267 240 KPPKGILLYGPPGSGKTLIARAVANETG 267 (764)
Q Consensus 240 ~~~~~vLL~GppGtGKTtLar~la~~l~ 267 (764)
.++..+.|.||+|||||||++.|++.++
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4567899999999999999999999887
No 451
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.49 E-value=0.027 Score=59.80 Aligned_cols=142 Identities=18% Similarity=0.173 Sum_probs=84.9
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHh---CC-e--EEEEechhhhhhccchhHHHHHHHHHHHH----hcCCeEEEEcccc
Q 004267 242 PKGILLYGPPGSGKTLIARAVANET---GA-F--FFCINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEID 311 (764)
Q Consensus 242 ~~~vLL~GppGtGKTtLar~la~~l---~~-~--~i~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid 311 (764)
...+||+||+|.||++.++.++..+ +. . .+.+++ ...++.+++.+. .....+++|||++
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~plf~~~kvvii~~~~ 86 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDP-----------NTDWNAIFSLCQAMSLFASRQTLLLLLPE 86 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCT-----------TCCHHHHHHHHHHHHHCCSCEEEEEECCS
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecC-----------CCCHHHHHHHhcCcCCccCCeEEEEECCC
Confidence 4579999999999999999998865 21 2 122221 122344444433 3456799999998
Q ss_pred c-cCCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecC-C----CCCCChhhhccCCcceEEEecCCChHHHHHHH
Q 004267 312 S-IAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATN-R----PNSIDPALRRFGRFDREIDIGVPDEVGRLEVL 385 (764)
Q Consensus 312 ~-l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn-~----~~~ld~al~r~~rf~~~i~i~~p~~~~R~~il 385 (764)
. +... ..+.|+..++.... ..++|+.+++ . ...+-+.+.+ |. ..+++..++..+....+
T Consensus 87 ~kl~~~-----------~~~aLl~~le~p~~-~~~~il~~~~~~~~~~~~k~~~~i~s--r~-~~~~~~~l~~~~l~~~l 151 (343)
T 1jr3_D 87 NGPNAA-----------INEQLLTLTGLLHD-DLLLIVRGNKLSKAQENAAWFTALAN--RS-VQVTCQTPEQAQLPRWV 151 (343)
T ss_dssp SCCCTT-----------HHHHHHHHHTTCBT-TEEEEEEESCCCTTTTTSHHHHHHTT--TC-EEEEECCCCTTHHHHHH
T ss_pred CCCChH-----------HHHHHHHHHhcCCC-CeEEEEEcCCCChhhHhhHHHHHHHh--Cc-eEEEeeCCCHHHHHHHH
Confidence 7 5321 23557777765443 3444444443 1 1234456655 44 56888888888877777
Q ss_pred HHHhcCCCCC-CchhhhHHhhhcCC
Q 004267 386 RIHTKNMKLS-DDVDLERIAKDTHG 409 (764)
Q Consensus 386 ~~~~~~~~l~-~~~~l~~la~~t~g 409 (764)
+..++...+. ++..+..++..+.|
T Consensus 152 ~~~~~~~g~~i~~~a~~~l~~~~~g 176 (343)
T 1jr3_D 152 AARAKQLNLELDDAANQVLCYCYEG 176 (343)
T ss_dssp HHHHHHTTCEECHHHHHHHHHSSTT
T ss_pred HHHHHHcCCCCCHHHHHHHHHHhch
Confidence 7665544322 23345666666544
No 452
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.48 E-value=0.0017 Score=62.75 Aligned_cols=30 Identities=27% Similarity=0.368 Sum_probs=26.2
Q ss_pred cceeeeCCCCCChhHHHHHHHHHhCCeeEE
Q 004267 516 KGVLFYGPPGCGKTLLAKAIANECQANFIS 545 (764)
Q Consensus 516 ~gill~GppGtGKT~lak~lA~~~~~~~i~ 545 (764)
.-++|.|+|||||||+|+.++..++.+++.
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 33 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYGYTHLS 33 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 348999999999999999999999876654
No 453
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.48 E-value=0.0018 Score=62.43 Aligned_cols=31 Identities=26% Similarity=0.350 Sum_probs=26.8
Q ss_pred cceeeeCCCCCChhHHHHHHHHHhCCeeEEE
Q 004267 516 KGVLFYGPPGCGKTLLAKAIANECQANFISV 546 (764)
Q Consensus 516 ~gill~GppGtGKT~lak~lA~~~~~~~i~v 546 (764)
.-++|.|+|||||||+++.++..++..++..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 4589999999999999999999998766543
No 454
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.47 E-value=0.0017 Score=67.56 Aligned_cols=37 Identities=38% Similarity=0.549 Sum_probs=30.1
Q ss_pred CcceeeeCCCCCChhHHHHHHHHHhCCeeEEEecccc
Q 004267 515 SKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 551 (764)
Q Consensus 515 ~~gill~GppGtGKT~lak~lA~~~~~~~i~v~~~~l 551 (764)
+.-++|.||||+||||+++.++......++.|++..+
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 3458999999999999999999988656777776444
No 455
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.46 E-value=0.002 Score=62.75 Aligned_cols=28 Identities=29% Similarity=0.597 Sum_probs=25.5
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCeEE
Q 004267 244 GILLYGPPGSGKTLIARAVANETGAFFF 271 (764)
Q Consensus 244 ~vLL~GppGtGKTtLar~la~~l~~~~i 271 (764)
.|+|.|++||||||+++.|++.++..++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~ 29 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIF 29 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEE
Confidence 5899999999999999999999998654
No 456
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.46 E-value=0.0017 Score=64.47 Aligned_cols=30 Identities=27% Similarity=0.474 Sum_probs=26.7
Q ss_pred ceeeeCCCCCChhHHHHHHHHHhCCeeEEE
Q 004267 517 GVLFYGPPGCGKTLLAKAIANECQANFISV 546 (764)
Q Consensus 517 gill~GppGtGKT~lak~lA~~~~~~~i~v 546 (764)
.++|.|+|||||||+|+.||..++.+++..
T Consensus 7 ~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 7 NLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 489999999999999999999998777654
No 457
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.45 E-value=0.0017 Score=64.85 Aligned_cols=32 Identities=22% Similarity=0.401 Sum_probs=27.4
Q ss_pred CcceeeeCCCCCChhHHHHHHHHHhCCeeEEE
Q 004267 515 SKGVLFYGPPGCGKTLLAKAIANECQANFISV 546 (764)
Q Consensus 515 ~~gill~GppGtGKT~lak~lA~~~~~~~i~v 546 (764)
+.-++|.|+|||||||+++.||..++..++..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 34599999999999999999999998776643
No 458
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.44 E-value=0.0024 Score=64.02 Aligned_cols=30 Identities=30% Similarity=0.592 Sum_probs=26.7
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCeEE
Q 004267 242 PKGILLYGPPGSGKTLIARAVANETGAFFF 271 (764)
Q Consensus 242 ~~~vLL~GppGtGKTtLar~la~~l~~~~i 271 (764)
+..|.|.|||||||||+++.|++.++..++
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~ 38 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYL 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 457999999999999999999999987654
No 459
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.44 E-value=0.0016 Score=62.84 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=22.4
Q ss_pred ceeeeCCCCCChhHHHHHHHHHhC
Q 004267 517 GVLFYGPPGCGKTLLAKAIANECQ 540 (764)
Q Consensus 517 gill~GppGtGKT~lak~lA~~~~ 540 (764)
-++|.|+|||||||+++.|+..++
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 489999999999999999999877
No 460
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.43 E-value=0.0019 Score=63.24 Aligned_cols=28 Identities=32% Similarity=0.464 Sum_probs=24.4
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCeEEE
Q 004267 244 GILLYGPPGSGKTLIARAVANETGAFFFC 272 (764)
Q Consensus 244 ~vLL~GppGtGKTtLar~la~~l~~~~i~ 272 (764)
.|.|.|++||||||+++.|++ ++..++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~ 30 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLD 30 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEE
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEE
Confidence 589999999999999999999 8765543
No 461
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.43 E-value=0.00087 Score=67.24 Aligned_cols=32 Identities=25% Similarity=0.323 Sum_probs=20.5
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHH-HHhC
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVA-NETG 267 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la-~~l~ 267 (764)
++.+.++..+.|.||+|||||||++.|+ +.+.
T Consensus 21 sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 21 SMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp -CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred CcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 3456778889999999999999999999 8764
No 462
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=96.43 E-value=0.0092 Score=70.21 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=22.7
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Q 004267 242 PKGILLYGPPGSGKTLIARAVANET 266 (764)
Q Consensus 242 ~~~vLL~GppGtGKTtLar~la~~l 266 (764)
++.++|+||+|+||||++|.+++..
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhhh
Confidence 6789999999999999999999763
No 463
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.42 E-value=0.0016 Score=62.93 Aligned_cols=25 Identities=28% Similarity=0.583 Sum_probs=22.8
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Q 004267 243 KGILLYGPPGSGKTLIARAVANETG 267 (764)
Q Consensus 243 ~~vLL~GppGtGKTtLar~la~~l~ 267 (764)
+.+.|.||+|+|||||++.|++.+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4689999999999999999999875
No 464
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.41 E-value=0.0019 Score=64.30 Aligned_cols=29 Identities=17% Similarity=0.324 Sum_probs=25.4
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhC
Q 004267 239 VKPPKGILLYGPPGSGKTLIARAVANETG 267 (764)
Q Consensus 239 i~~~~~vLL~GppGtGKTtLar~la~~l~ 267 (764)
.++++.+.|.||+|+|||||+++|++...
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 46788899999999999999999999876
No 465
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.41 E-value=0.0012 Score=71.06 Aligned_cols=76 Identities=20% Similarity=0.246 Sum_probs=50.1
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHhCC--eEEEEechhhhh-----h---ccc-h-------hHHHHHHHHHHH
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETGA--FFFCINGPEIMS-----K---LAG-E-------SESNLRKAFEEA 297 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~--~~i~v~~~~l~~-----~---~~g-~-------~~~~l~~vf~~a 297 (764)
++.+.++..++|.||+|||||||+++|++.+.. ..+.+.+..-.. . +.. + ....++..+..+
T Consensus 169 ~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~ 248 (361)
T 2gza_A 169 RRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSC 248 (361)
T ss_dssp HHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHH
T ss_pred HHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHH
Confidence 345577889999999999999999999998753 345555432110 0 111 0 111345666677
Q ss_pred HhcCCeEEEEcccc
Q 004267 298 EKNAPSIIFIDEID 311 (764)
Q Consensus 298 ~~~~p~il~iDEid 311 (764)
....|..++++|+.
T Consensus 249 l~~~pd~~l~~e~r 262 (361)
T 2gza_A 249 LRMKPTRILLAELR 262 (361)
T ss_dssp TTSCCSEEEESCCC
T ss_pred HhcCCCEEEEcCch
Confidence 77789999999964
No 466
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.40 E-value=0.0039 Score=59.97 Aligned_cols=38 Identities=32% Similarity=0.301 Sum_probs=29.7
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhC---CeEEEEechh
Q 004267 240 KPPKGILLYGPPGSGKTLIARAVANETG---AFFFCINGPE 277 (764)
Q Consensus 240 ~~~~~vLL~GppGtGKTtLar~la~~l~---~~~i~v~~~~ 277 (764)
.++..|+|.|+|||||||+++.|+..++ ..+..+++..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~ 51 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDW 51 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHH
Confidence 4577899999999999999999998874 3345555443
No 467
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.40 E-value=0.0017 Score=64.08 Aligned_cols=29 Identities=31% Similarity=0.432 Sum_probs=25.4
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCC
Q 004267 240 KPPKGILLYGPPGSGKTLIARAVANETGA 268 (764)
Q Consensus 240 ~~~~~vLL~GppGtGKTtLar~la~~l~~ 268 (764)
.++.-++|+||+|+||||+++.|++.++.
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 35677999999999999999999998753
No 468
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.40 E-value=0.002 Score=62.19 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=22.5
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Q 004267 244 GILLYGPPGSGKTLIARAVANETG 267 (764)
Q Consensus 244 ~vLL~GppGtGKTtLar~la~~l~ 267 (764)
.|+|.|+|||||||+++.|+..++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999999886
No 469
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.40 E-value=0.0021 Score=62.09 Aligned_cols=35 Identities=29% Similarity=0.425 Sum_probs=27.3
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhh
Q 004267 243 KGILLYGPPGSGKTLIARAVANETGAFFFCINGPEI 278 (764)
Q Consensus 243 ~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l 278 (764)
..++|.||||+||||+++.|++..+. .+.+++.++
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~~g-~~~i~~d~~ 37 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQLDN-SAYIEGDII 37 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSS-EEEEEHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCC-eEEEcccch
Confidence 46899999999999999999986654 245665554
No 470
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.40 E-value=0.0015 Score=62.34 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=21.6
Q ss_pred ceeeeCCCCCChhHHHHHHHH-HhCC
Q 004267 517 GVLFYGPPGCGKTLLAKAIAN-ECQA 541 (764)
Q Consensus 517 gill~GppGtGKT~lak~lA~-~~~~ 541 (764)
-++|.|+|||||||+|+.++. ..+.
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~~~~~~ 29 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIAKNPGF 29 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSTTE
T ss_pred EEEEecCCCCCHHHHHHHHHhhcCCc
Confidence 489999999999999999998 4443
No 471
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.39 E-value=0.012 Score=59.10 Aligned_cols=33 Identities=33% Similarity=0.276 Sum_probs=26.7
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCeEEEEec
Q 004267 243 KGILLYGPPGSGKTLIARAVANETGAFFFCING 275 (764)
Q Consensus 243 ~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~ 275 (764)
..++++||+|+|||.++.+++...+...+.+..
T Consensus 109 ~~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P 141 (237)
T 2fz4_A 109 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVP 141 (237)
T ss_dssp SEEEEEESSSTTHHHHHHHHHHHSCSCEEEEES
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeC
Confidence 359999999999999999998888666555543
No 472
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.39 E-value=0.0016 Score=62.44 Aligned_cols=29 Identities=28% Similarity=0.457 Sum_probs=22.3
Q ss_pred cceeeeCCCCCChhHHHHHHHHHhCCeeE
Q 004267 516 KGVLFYGPPGCGKTLLAKAIANECQANFI 544 (764)
Q Consensus 516 ~gill~GppGtGKT~lak~lA~~~~~~~i 544 (764)
.-++|.|+|||||||+|+.++..++.+++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 34899999999999999999999998876
No 473
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.38 E-value=0.002 Score=63.75 Aligned_cols=29 Identities=28% Similarity=0.465 Sum_probs=25.5
Q ss_pred eeeeCCCCCChhHHHHHHHHHhCCeeEEE
Q 004267 518 VLFYGPPGCGKTLLAKAIANECQANFISV 546 (764)
Q Consensus 518 ill~GppGtGKT~lak~lA~~~~~~~i~v 546 (764)
++|.|||||||||+|+.++..++..++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 78999999999999999999988766544
No 474
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.38 E-value=0.0023 Score=62.46 Aligned_cols=34 Identities=21% Similarity=0.147 Sum_probs=28.2
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHh-CCeEEEEe
Q 004267 241 PPKGILLYGPPGSGKTLIARAVANET-GAFFFCIN 274 (764)
Q Consensus 241 ~~~~vLL~GppGtGKTtLar~la~~l-~~~~i~v~ 274 (764)
.+..|.|.|++||||||+++.|+..+ +.+++.+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 45679999999999999999999988 45565554
No 475
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.38 E-value=0.0021 Score=60.56 Aligned_cols=28 Identities=14% Similarity=0.273 Sum_probs=25.7
Q ss_pred eeeeCCCCCChhHHHHHHHHHhCCeeEE
Q 004267 518 VLFYGPPGCGKTLLAKAIANECQANFIS 545 (764)
Q Consensus 518 ill~GppGtGKT~lak~lA~~~~~~~i~ 545 (764)
++|.|+|||||||+|+.++..++.+++.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 30 (168)
T 2pt5_A 3 IYLIGFMCSGKSTVGSLLSRSLNIPFYD 30 (168)
T ss_dssp EEEESCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 7899999999999999999999987764
No 476
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.38 E-value=0.0017 Score=63.68 Aligned_cols=32 Identities=31% Similarity=0.353 Sum_probs=26.0
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCeEEEEechhh
Q 004267 244 GILLYGPPGSGKTLIARAVANETGAFFFCINGPEI 278 (764)
Q Consensus 244 ~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l 278 (764)
.|.|.||+||||||+++.|++ +|..++ ++.++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~i--d~d~~ 35 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLV--DADVV 35 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEE--EHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCccc--chHHH
Confidence 589999999999999999998 776654 44443
No 477
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.37 E-value=0.0027 Score=61.28 Aligned_cols=31 Identities=32% Similarity=0.291 Sum_probs=27.1
Q ss_pred eEEEECCCCCCHHHHHHHHHHHh---CCeEEEEe
Q 004267 244 GILLYGPPGSGKTLIARAVANET---GAFFFCIN 274 (764)
Q Consensus 244 ~vLL~GppGtGKTtLar~la~~l---~~~~i~v~ 274 (764)
.|+|.|++||||||+++.|+..+ +..++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 48999999999999999999988 77777654
No 478
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.36 E-value=0.0023 Score=63.27 Aligned_cols=30 Identities=27% Similarity=0.354 Sum_probs=26.0
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCeEEEE
Q 004267 244 GILLYGPPGSGKTLIARAVANETGAFFFCI 273 (764)
Q Consensus 244 ~vLL~GppGtGKTtLar~la~~l~~~~i~v 273 (764)
.|+|.|+|||||||+++.|+..++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 489999999999999999999998765443
No 479
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.36 E-value=0.0025 Score=64.02 Aligned_cols=31 Identities=26% Similarity=0.464 Sum_probs=27.1
Q ss_pred cceeeeCCCCCChhHHHHHHHHHhCCeeEEE
Q 004267 516 KGVLFYGPPGCGKTLLAKAIANECQANFISV 546 (764)
Q Consensus 516 ~gill~GppGtGKT~lak~lA~~~~~~~i~v 546 (764)
..++|.|+|||||||+|+.||..++..++..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 3499999999999999999999999776654
No 480
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.35 E-value=0.0021 Score=61.46 Aligned_cols=36 Identities=22% Similarity=0.319 Sum_probs=30.3
Q ss_pred cceeeeCCCCCChhHHHHHHHHHh---CCeeEEEecccc
Q 004267 516 KGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPEL 551 (764)
Q Consensus 516 ~gill~GppGtGKT~lak~lA~~~---~~~~i~v~~~~l 551 (764)
.-+.|.|++||||||+++.++..+ +.+++.+++..+
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~ 44 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 44 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHH
Confidence 348899999999999999999987 888888775443
No 481
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.35 E-value=0.0023 Score=63.15 Aligned_cols=40 Identities=23% Similarity=0.302 Sum_probs=31.8
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhC----CeEEEEechhh
Q 004267 239 VKPPKGILLYGPPGSGKTLIARAVANETG----AFFFCINGPEI 278 (764)
Q Consensus 239 i~~~~~vLL~GppGtGKTtLar~la~~l~----~~~i~v~~~~l 278 (764)
+.++..|+|.|++||||||+++.|++.++ ..++.+++..+
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 45677899999999999999999998775 44666765444
No 482
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.35 E-value=0.0044 Score=71.11 Aligned_cols=46 Identities=28% Similarity=0.413 Sum_probs=33.5
Q ss_pred hhhhhccCCCCcc--eeeeCCCCCChhHHHHHHHHHhC--CeeEEEeccc
Q 004267 505 EKFEKFGMSPSKG--VLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPE 550 (764)
Q Consensus 505 ~~~~~~~~~~~~g--ill~GppGtGKT~lak~lA~~~~--~~~i~v~~~~ 550 (764)
..+++.++..++| +.+.||+|+|||||++++++... .+-+.++|.+
T Consensus 355 ~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~ 404 (578)
T 4a82_A 355 PILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHN 404 (578)
T ss_dssp CSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEE
T ss_pred cceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEE
Confidence 3556655555555 99999999999999999999753 3456666543
No 483
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.35 E-value=0.011 Score=64.64 Aligned_cols=71 Identities=15% Similarity=0.071 Sum_probs=47.0
Q ss_pred CcceeeeCCCCCChhHHHHHHHHHh---CCeeEEEecccc-------------------hhcccC-cchHHHHHHHHHHh
Q 004267 515 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPEL-------------------LTMWFG-ESEANVREIFDKAR 571 (764)
Q Consensus 515 ~~gill~GppGtGKT~lak~lA~~~---~~~~i~v~~~~l-------------------~~~~~g-~se~~i~~~f~~a~ 571 (764)
+.-+++.|+||+||||++..+|..+ +.....+.+.-+ ...+.+ .....++..++.++
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~ 179 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFK 179 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHH
Confidence 4559999999999999999999754 445555543211 000111 22334567778888
Q ss_pred hCCCeEEEEecccc
Q 004267 572 QSAPCVLFFDELDS 585 (764)
Q Consensus 572 ~~~p~iifiDEid~ 585 (764)
...+.++++|..-.
T Consensus 180 ~~~~DvVIIDTaGr 193 (443)
T 3dm5_A 180 SKGVDIIIVDTAGR 193 (443)
T ss_dssp HTTCSEEEEECCCC
T ss_pred hCCCCEEEEECCCc
Confidence 77778999998743
No 484
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.35 E-value=0.0021 Score=63.49 Aligned_cols=29 Identities=31% Similarity=0.527 Sum_probs=25.6
Q ss_pred eeeeCCCCCChhHHHHHHHHHhCCeeEEE
Q 004267 518 VLFYGPPGCGKTLLAKAIANECQANFISV 546 (764)
Q Consensus 518 ill~GppGtGKT~lak~lA~~~~~~~i~v 546 (764)
++|.|||||||||+|+.++..++..++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 78999999999999999999998766543
No 485
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.35 E-value=0.012 Score=61.29 Aligned_cols=35 Identities=31% Similarity=0.237 Sum_probs=27.5
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh---CCeEEEEe
Q 004267 240 KPPKGILLYGPPGSGKTLIARAVANET---GAFFFCIN 274 (764)
Q Consensus 240 ~~~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~ 274 (764)
.+++.+.++|++|+||||++..+|+.+ +..+..++
T Consensus 96 ~~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~ 133 (295)
T 1ls1_A 96 KDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA 133 (295)
T ss_dssp CSSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 367789999999999999999999876 34444444
No 486
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.35 E-value=0.0024 Score=62.23 Aligned_cols=32 Identities=22% Similarity=0.407 Sum_probs=26.0
Q ss_pred hhCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Q 004267 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (764)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 267 (764)
++....++.+.|.||+|+|||||++.|++...
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34445678899999999999999999999875
No 487
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.35 E-value=0.0014 Score=66.50 Aligned_cols=31 Identities=26% Similarity=0.426 Sum_probs=27.6
Q ss_pred cceeeeCCCCCChhHHHHHHHHHhCCeeEEE
Q 004267 516 KGVLFYGPPGCGKTLLAKAIANECQANFISV 546 (764)
Q Consensus 516 ~gill~GppGtGKT~lak~lA~~~~~~~i~v 546 (764)
..+.|.|++||||||+++.+|..++.+|+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 4599999999999999999999999877653
No 488
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.34 E-value=0.045 Score=54.15 Aligned_cols=159 Identities=18% Similarity=0.253 Sum_probs=0.0
Q ss_pred eeeeCCCCCChhHHHHHHHHHh---CCeeEEEec--------ccchhcccCc------------chHHHHHHHHHHhhCC
Q 004267 518 VLFYGPPGCGKTLLAKAIANEC---QANFISVKG--------PELLTMWFGE------------SEANVREIFDKARQSA 574 (764)
Q Consensus 518 ill~GppGtGKT~lak~lA~~~---~~~~i~v~~--------~~l~~~~~g~------------se~~i~~~f~~a~~~~ 574 (764)
+++.|+||+||||++-.+|..+ |...+.+.. ..+....-.. .+..+..+.. ..
T Consensus 9 I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L~----~~ 84 (228)
T 2r8r_A 9 VFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMDLDALLK----AA 84 (228)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECCHHHHHH----HC
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHHHhcCccccCcceeecCCcccccccHHHHHh----cC
Q ss_pred CeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCC------------------CCCCCCcc
Q 004267 575 PCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATN------------------RPDIIDPA 636 (764)
Q Consensus 575 p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn------------------~~~~ld~a 636 (764)
|.++++||+-......... ......+...+-..+| |++|+| ..+.+...
T Consensus 85 pdlvIVDElG~~~~~~~r~----~~~~qDV~~~l~sgid---------VitT~Nlqh~esl~d~v~~itg~~v~e~vpd~ 151 (228)
T 2r8r_A 85 PSLVLVDELAHTNAPGSRH----TKRWQDIQELLAAGID---------VYTTVNVQHLESLNDQVRGITGVQVRETLPDW 151 (228)
T ss_dssp CSEEEESCTTCBCCTTCSS----SBHHHHHHHHHHTTCE---------EEEEEEGGGBGGGHHHHHHHHSCCCCSCBCHH
T ss_pred CCEEEEeCCCCCCcccchh----HHHHHHHHHHHcCCCC---------EEEEccccccccHHHHHHHHcCCCcCCcCccH
Q ss_pred CCCCCccceEEeecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q 004267 637 LLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYA 702 (764)
Q Consensus 637 llrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~~g~sg~di~~~~~~a~~~a 702 (764)
++. +.|.+..+..|-.+ +++.+-...-...+.--.++... |+-..|.++-.-|...+
T Consensus 152 ~~~--~a~~v~lvD~~p~~----l~~rl~~g~vy~~~~~~~a~~~~---f~~~nl~~lrelal~~~ 208 (228)
T 2r8r_A 152 VLQ--EAFDLVLIDLPPRE----LLERLRDGKVYVPEQARAAIDAF---FTQTNLTALREMAMQTA 208 (228)
T ss_dssp HHH--TCSEEEEBCCCHHH----HHHHHHTTCCCCTTCCHHHHHHH---CCHHHHHHHHHHHHHHH
T ss_pred HHh--hCCeEEEecCCHHH----HHHHHHCCCccChhHHHHHHHhh---hchhhHHHHHHHHHHHH
No 489
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.34 E-value=0.0021 Score=62.39 Aligned_cols=31 Identities=23% Similarity=0.400 Sum_probs=26.7
Q ss_pred cceeeeCCCCCChhHHHHHHHHHhCCeeEEE
Q 004267 516 KGVLFYGPPGCGKTLLAKAIANECQANFISV 546 (764)
Q Consensus 516 ~gill~GppGtGKT~lak~lA~~~~~~~i~v 546 (764)
.-++|.|+|||||||+|+.++..++..++..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 4599999999999999999999998666543
No 490
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.33 E-value=0.0026 Score=63.25 Aligned_cols=28 Identities=36% Similarity=0.540 Sum_probs=25.4
Q ss_pred ceeeeCCCCCChhHHHHHHHHHhCCeeE
Q 004267 517 GVLFYGPPGCGKTLLAKAIANECQANFI 544 (764)
Q Consensus 517 gill~GppGtGKT~lak~lA~~~~~~~i 544 (764)
-+.|.||+||||||+++.+++.++.+++
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~g~~~~ 34 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEALQWHLL 34 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 4899999999999999999999987665
No 491
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.33 E-value=0.003 Score=66.13 Aligned_cols=30 Identities=30% Similarity=0.512 Sum_probs=26.8
Q ss_pred hCCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 004267 237 IGVKPPKGILLYGPPGSGKTLIARAVANET 266 (764)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtLar~la~~l 266 (764)
+.+.++..++|+||+|+||||+++.||+.+
T Consensus 95 ~~~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 95 LGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp CCSSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 345778889999999999999999999986
No 492
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.32 E-value=0.0027 Score=63.30 Aligned_cols=28 Identities=32% Similarity=0.546 Sum_probs=24.9
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCeEE
Q 004267 244 GILLYGPPGSGKTLIARAVANETGAFFF 271 (764)
Q Consensus 244 ~vLL~GppGtGKTtLar~la~~l~~~~i 271 (764)
.|+|.|+|||||||+++.|+..++..++
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i 29 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHI 29 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 4899999999999999999999986544
No 493
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.32 E-value=0.0024 Score=62.67 Aligned_cols=30 Identities=23% Similarity=0.416 Sum_probs=26.4
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhCC
Q 004267 239 VKPPKGILLYGPPGSGKTLIARAVANETGA 268 (764)
Q Consensus 239 i~~~~~vLL~GppGtGKTtLar~la~~l~~ 268 (764)
..++..|+|.|||||||||+++.|+..++.
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~ 38 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFPS 38 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCTT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCcc
Confidence 456778999999999999999999998853
No 494
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.31 E-value=0.0025 Score=62.56 Aligned_cols=28 Identities=25% Similarity=0.100 Sum_probs=25.2
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCe
Q 004267 242 PKGILLYGPPGSGKTLIARAVANETGAF 269 (764)
Q Consensus 242 ~~~vLL~GppGtGKTtLar~la~~l~~~ 269 (764)
+..|+|.|+|||||||+++.|+..++..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 4679999999999999999999998763
No 495
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.30 E-value=0.004 Score=71.19 Aligned_cols=97 Identities=22% Similarity=0.331 Sum_probs=54.8
Q ss_pred cceeeeCCCCCChhHHHHHHHHHh---CCeeEEEeccc----chhcccCcchHHHHHHHHHH---------hhCCCeEEE
Q 004267 516 KGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPE----LLTMWFGESEANVREIFDKA---------RQSAPCVLF 579 (764)
Q Consensus 516 ~gill~GppGtGKT~lak~lA~~~---~~~~i~v~~~~----l~~~~~g~se~~i~~~f~~a---------~~~~p~iif 579 (764)
..+++.||||||||+++++++..+ +...+.+.... .+....|.....+..++... ......+++
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~~~~~~~~~~dvlI 284 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQGFRHNHLEPAPYDLLI 284 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETTEESCSSSSCCSCSEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcchhhhhhcccccCCEEE
Confidence 458999999999999999998754 44444332211 11111122222233333111 112357999
Q ss_pred EecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCC
Q 004267 580 FDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNR 629 (764)
Q Consensus 580 iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~ 629 (764)
+||+..+- ...+..|+..+. ...++++++-.+.
T Consensus 285 IDEasml~--------------~~~~~~Ll~~~~---~~~~lilvGD~~Q 317 (574)
T 3e1s_A 285 VDEVSMMG--------------DALMLSLLAAVP---PGARVLLVGDTDQ 317 (574)
T ss_dssp ECCGGGCC--------------HHHHHHHHTTSC---TTCEEEEEECTTS
T ss_pred EcCccCCC--------------HHHHHHHHHhCc---CCCEEEEEecccc
Confidence 99987642 335566655443 4567888886554
No 496
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.29 E-value=0.002 Score=64.03 Aligned_cols=30 Identities=30% Similarity=0.397 Sum_probs=26.2
Q ss_pred cceeeeCCCCCChhHHHHHHHHHhCCeeEE
Q 004267 516 KGVLFYGPPGCGKTLLAKAIANECQANFIS 545 (764)
Q Consensus 516 ~gill~GppGtGKT~lak~lA~~~~~~~i~ 545 (764)
.-++|.|||||||||+++.||..++..++.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQLAHIS 35 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 458999999999999999999999876543
No 497
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.28 E-value=0.0083 Score=63.80 Aligned_cols=30 Identities=20% Similarity=0.213 Sum_probs=26.5
Q ss_pred hCCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 004267 237 IGVKPPKGILLYGPPGSGKTLIARAVANET 266 (764)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtLar~la~~l 266 (764)
+.+..+..+.|.||||+|||||++.|++.+
T Consensus 50 ~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 50 PQTGRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp GGCCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cccCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 346778889999999999999999999875
No 498
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.27 E-value=0.0033 Score=60.87 Aligned_cols=31 Identities=26% Similarity=0.196 Sum_probs=26.3
Q ss_pred eEEEECCCCCCHHHHHHHHHHHh---CCeEEEEe
Q 004267 244 GILLYGPPGSGKTLIARAVANET---GAFFFCIN 274 (764)
Q Consensus 244 ~vLL~GppGtGKTtLar~la~~l---~~~~i~v~ 274 (764)
-|.|.|++||||||+++.|+..+ +..++...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 48999999999999999999998 87776554
No 499
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.27 E-value=0.0023 Score=64.81 Aligned_cols=33 Identities=24% Similarity=0.415 Sum_probs=27.5
Q ss_pred CCcceeeeCCCCCChhHHHHHHHHHhCCeeEEE
Q 004267 514 PSKGVLFYGPPGCGKTLLAKAIANECQANFISV 546 (764)
Q Consensus 514 ~~~gill~GppGtGKT~lak~lA~~~~~~~i~v 546 (764)
.+.-++|.||||+||||+|+.|+..++..++..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 345599999999999999999999987665543
No 500
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=96.26 E-value=0.024 Score=64.52 Aligned_cols=141 Identities=15% Similarity=0.202 Sum_probs=75.5
Q ss_pred cceeeeCCCCCChhHHHHHHHH----HhCCe-----eEEEeccc---c-------hhcccCc-------------chHHH
Q 004267 516 KGVLFYGPPGCGKTLLAKAIAN----ECQAN-----FISVKGPE---L-------LTMWFGE-------------SEANV 563 (764)
Q Consensus 516 ~gill~GppGtGKT~lak~lA~----~~~~~-----~i~v~~~~---l-------~~~~~g~-------------se~~i 563 (764)
+.+.++|+.|+||||||+.+++ ..... ++.+.... + +.. +|. ....+
T Consensus 153 ~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~-l~~~~~~~~~~~~~~~~~~~l 231 (549)
T 2a5y_B 153 FFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM-LKSEDDLLNFPSVEHVTSVVL 231 (549)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH-HTTTSCCTTCCCCTTCCHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH-HhcCcccccccccccccHHHH
Confidence 4589999999999999999996 22221 23333320 1 000 111 01122
Q ss_pred HHHHHHHhhC-CCeEEEEecccchhhccCCCCCCCCcchHHHHHHHHHhhcCCCCCCcEEEEecCCCCCCCCccCCCCCc
Q 004267 564 REIFDKARQS-APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGR 642 (764)
Q Consensus 564 ~~~f~~a~~~-~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgR 642 (764)
...+...-.. ...+|++|+++... .+ .+ ... .+.-||.||........ . +.
T Consensus 232 ~~~l~~~L~~~kr~LlVLDdv~~~~---------------~~--~~-~~~------~gs~ilvTTR~~~v~~~--~--~~ 283 (549)
T 2a5y_B 232 KRMICNALIDRPNTLFVFDDVVQEE---------------TI--RW-AQE------LRLRCLVTTRDVEISNA--A--SQ 283 (549)
T ss_dssp HHHHHHHHTTSTTEEEEEEEECCHH---------------HH--HH-HHH------TTCEEEEEESBGGGGGG--C--CS
T ss_pred HHHHHHHHcCCCcEEEEEECCCCch---------------hh--cc-ccc------CCCEEEEEcCCHHHHHH--c--CC
Confidence 2333333334 37899999987631 11 11 111 23456677765432211 1 12
Q ss_pred cceEEeecCCCHHHHHHHHHHHhccCCCCCcc--cHHHHHHHCCC
Q 004267 643 LDQLIYIPLPDEDSRHQIFKACLRKSPVSKDV--DLRALAKYTQG 685 (764)
Q Consensus 643 f~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~--~l~~la~~~~g 685 (764)
.+..+.+++.+.++-.++|..+....+...+. ....+++.+.|
T Consensus 284 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~G 328 (549)
T 2a5y_B 284 TCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSG 328 (549)
T ss_dssp CEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTT
T ss_pred CCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCC
Confidence 34678899999999999999885433321111 13455555554
Done!