BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 004269
         (764 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|302141664|emb|CBI18867.3| unnamed protein product [Vitis vinifera]
          Length = 804

 Score = 1003 bits (2594), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/785 (63%), Positives = 610/785 (77%), Gaps = 45/785 (5%)

Query: 1   MYRPLLRTRFQLIADSFCKSKFHKHERRNVANKLELSRTLTTT-----MGLNEESISKAT 55
           M+R + R   + I+DS   SK   ++++N+  KLE  RT TT+      G   +SI++  
Sbjct: 1   MHRYVSRVPLRSISDSLYLSKSSVYDQKNLVRKLESLRTFTTSRDHDCFGYGRKSITRLL 60

Query: 56  QMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEE 115
           Q+QIVDAL   ERSRAS LL  LG  ++SL ADDF +IL +C++SPDPLFVME WR+M+E
Sbjct: 61  QVQIVDALRSNERSRASSLLSELGRGNYSLRADDFIYILEHCSKSPDPLFVMEIWRIMDE 120

Query: 116 KEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMV 175
           KE+ +NN+CY+L +QALCKGGYLEEA NL+ F+GE + I+PILP+YN+FL  C +  S++
Sbjct: 121 KEVHVNNRCYMLSIQALCKGGYLEEAFNLLNFVGENHDIHPILPMYNNFLRGCVQTRSLL 180

Query: 176 HANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVW 235
           HAN CLDLM+ +++GKNEVTY++ LKLAV Q+NLSA H+IW++Y+ +YS+SI SLRKF+W
Sbjct: 181 HANQCLDLMEHQVLGKNEVTYSQFLKLAVLQQNLSAAHKIWKEYMTYYSMSIISLRKFIW 240

Query: 236 SFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLN----------- 284
           SFTRLRDL+SAY  LQHMV L   G ++IN+++EGRL SSRLDIPIP N           
Sbjct: 241 SFTRLRDLESAYAALQHMVDLVFKGSIFINKSAEGRLCSSRLDIPIPKNGDMGLKRCMEE 300

Query: 285 -------------------ALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQ 325
                              ++PVMKVLRWSFSDVI+AC +TQN GLAEQL+LQMQ+LGL+
Sbjct: 301 NEHSLPSVSDNSKKIDSHASMPVMKVLRWSFSDVIYACAQTQNCGLAEQLILQMQNLGLE 360

Query: 326 PSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEAL 385
           PS HTYDG I+AIVSDRG  +GMEVLK MQ  NLKP DST+A LS+  SKAL+LDLAE+L
Sbjct: 361 PSCHTYDGLIKAIVSDRGFSDGMEVLKTMQLRNLKPYDSTLAALSIGSSKALQLDLAESL 420

Query: 386 LDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNA 444
           LDQISR +   PF+AFLAACDT+D+PERA+ I +KM+Q KL+P++ TYELLFSLFGNVNA
Sbjct: 421 LDQISRISYVHPFNAFLAACDTLDQPERAVPILSKMKQLKLQPNVGTYELLFSLFGNVNA 480

Query: 445 PYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQY----- 499
           PYEEGNM SQVD A+RI AIEMDM  N IQHSH+SMKNLLKALGAEGMIREL+QY     
Sbjct: 481 PYEEGNMLSQVDVARRIKAIEMDMMNNGIQHSHLSMKNLLKALGAEGMIRELMQYLHVAE 540

Query: 500 --FCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSII 557
             F  + T LGTP YNTVLHSLVEA+ESH A+EIFK M +  +P +AATYNIMIDCCS I
Sbjct: 541 NQFFRTNTYLGTPIYNTVLHSLVEAKESHIAIEIFKNMISRSLPRDAATYNIMIDCCSTI 600

Query: 558 RCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLY 617
           +C+KSA ALVSMM+RDGF P T+TYTALIKILL+  DFDEALNLLD   LE IP DVLLY
Sbjct: 601 KCYKSACALVSMMMRDGFLPWTLTYTALIKILLEREDFDEALNLLDQARLEEIPSDVLLY 660

Query: 618 NTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSM 677
           NTIL+KAC KGRID+IE + EQMHQ K+QPDPSTC++VFS YV+ GF ++A+E+LQVLSM
Sbjct: 661 NTILQKACLKGRIDLIELVAEQMHQEKIQPDPSTCYYVFSSYVDGGFFSTALESLQVLSM 720

Query: 678 RMLCEEVSTLEEKRSDFEDLILAEDSEAESRILQFCEDSNENLAFTAALLQLRWCTIVGF 737
           RM+ E+ STLEEKR++ ED I +ED +AES+ILQF + S+ENLA   ALL LRWC I G 
Sbjct: 721 RMISEDNSTLEEKRTELEDFIHSEDKDAESQILQFFKGSDENLAI--ALLNLRWCAISGS 778

Query: 738 PISWS 742
           PISW+
Sbjct: 779 PISWT 783


>gi|225459866|ref|XP_002284840.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g76280-like [Vitis vinifera]
          Length = 728

 Score =  916 bits (2368), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/728 (62%), Positives = 556/728 (76%), Gaps = 64/728 (8%)

Query: 45  GLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPL 104
           G   +SI++  Q+QIVDAL   ERSRAS LL  LG  ++SL ADDF +IL +C++SPDPL
Sbjct: 14  GYGRKSITRLLQVQIVDALRSNERSRASSLLSELGRGNYSLRADDFIYILEHCSKSPDPL 73

Query: 105 FVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSF 164
           FVME WR+M+EKE+ +NN+CY+L +QALCKGGYLEEA NL+ F+GE + I+PILP+YN+F
Sbjct: 74  FVMEIWRIMDEKEVHVNNRCYMLSIQALCKGGYLEEAFNLLNFVGENHDIHPILPMYNNF 133

Query: 165 LGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYS 224
           L  C +  S++HAN CLDLM+ +++GKNEVTY++ LKLAV Q+NLSA H+IW++Y+ +YS
Sbjct: 134 LRGCVQTRSLLHANQCLDLMEHQVLGKNEVTYSQFLKLAVLQQNLSAAHKIWKEYMTYYS 193

Query: 225 LSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLN 284
           +SI SLRKF+WSFTRLRDL+SAY  LQHMV L   G ++IN+++EGRL SSRLDIPIP N
Sbjct: 194 MSIISLRKFIWSFTRLRDLESAYAALQHMVDLVFKGSIFINKSAEGRLCSSRLDIPIPKN 253

Query: 285 ----------------------ALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSL 322
                                 ++PVMKVLRWSFSDVI+AC +TQN GLAEQL+LQ    
Sbjct: 254 GDMGLKRCMEENEHSLPSVSDNSMPVMKVLRWSFSDVIYACAQTQNCGLAEQLILQ---- 309

Query: 323 GLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLA 382
                                       LK MQ  NLKP DST+A LS+  SKAL+LDLA
Sbjct: 310 ----------------------------LKTMQLRNLKPYDSTLAALSIGSSKALQLDLA 341

Query: 383 EALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGN 441
           E+LLDQISR +   PF+AFLAACDT+D+PERA+ I +KM+Q KL+P++ TYELLFSLFGN
Sbjct: 342 ESLLDQISRISYVHPFNAFLAACDTLDQPERAVPILSKMKQLKLQPNVGTYELLFSLFGN 401

Query: 442 VNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQY-- 499
           VNAPYEEGNM SQVD A+RI AIEMDM  N IQHSH+SMKNLLKALGAEGMIREL+QY  
Sbjct: 402 VNAPYEEGNMLSQVDVARRIKAIEMDMMNNGIQHSHLSMKNLLKALGAEGMIRELMQYLH 461

Query: 500 -----FCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCC 554
                F  + T LGTP YNTVLHSLVEA+ESH A+EIFK M +  +P +AATYNIMIDCC
Sbjct: 462 VAENQFFRTNTYLGTPIYNTVLHSLVEAKESHIAIEIFKNMISRSLPRDAATYNIMIDCC 521

Query: 555 SIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDV 614
           S I+C+KSA ALVSMM+RDGF P T+TYTALIKILL+  DFDEALNLLD   LE IP DV
Sbjct: 522 STIKCYKSACALVSMMMRDGFLPWTLTYTALIKILLEREDFDEALNLLDQARLEEIPSDV 581

Query: 615 LLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQV 674
           LLYNTIL+KAC KGRID+IE + EQMHQ K+QPDPSTC++VFS YV+ GF ++A+E+LQV
Sbjct: 582 LLYNTILQKACLKGRIDLIELVAEQMHQEKIQPDPSTCYYVFSSYVDGGFFSTALESLQV 641

Query: 675 LSMRMLCEEVSTLEEKRSDFEDLILAEDSEAESRILQFCEDSNENLAFTAALLQLRWCTI 734
           LSMRM+ E+ STLEEKR++ ED I +ED +AES+ILQF + S+ENLA   ALL LRWC I
Sbjct: 642 LSMRMISEDNSTLEEKRTELEDFIHSEDKDAESQILQFFKGSDENLAI--ALLNLRWCAI 699

Query: 735 VGFPISWS 742
            G PISW+
Sbjct: 700 SGSPISWT 707


>gi|298111984|gb|ADI58371.1| pentatricopeptide repeat-containing protein [Capsicum annuum]
          Length = 805

 Score =  864 bits (2232), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/750 (58%), Positives = 544/750 (72%), Gaps = 48/750 (6%)

Query: 38  RTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYC 97
           R+ T+++G   E +S++ Q +IVDAL  GE+SRA  LL      ++ L A+DF  IL  C
Sbjct: 38  RSFTSSIGHVGEPVSRSGQKKIVDALVSGEKSRAVRLLYEFSLGNNKLSANDFASILQSC 97

Query: 98  ARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPI 157
           AR PDPLFVME WR+MEEKEI +++KCY L ++ALCKGGYL+EA +L+  +GE    Y +
Sbjct: 98  ARLPDPLFVMEIWRIMEEKEINISDKCYSLAVRALCKGGYLKEALSLMNIMGENLNCYSM 157

Query: 158 LPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWE 217
           LP+YN+FL AC +  S+ +A+ C+DLM+ +MVGKNE+TY +LLKLAV Q+NLSAVHEIW+
Sbjct: 158 LPIYNNFLAACYETQSVDYASKCMDLMEHQMVGKNEITYAQLLKLAVLQQNLSAVHEIWK 217

Query: 218 DYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRL 277
           + IK YSLSI SLRKF+WSFT L DL+SAY  LQHMV LA      I+RT+EGR    RL
Sbjct: 218 ECIKFYSLSIISLRKFIWSFTELGDLESAYTALQHMVRLAFR-DCDISRTAEGRFCDVRL 276

Query: 278 DIPIPLN-------------------------------------ALPVMKVLRWSFSDVI 300
           DIP P                                       +  VMK+LRWSF+DV+
Sbjct: 277 DIPAPSTGSWSFIDVSLDIEGSSNFDIESQSLGNMEISTVRKKLSASVMKLLRWSFNDVM 336

Query: 301 HACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLK 360
           HAC + QN  LAEQL+LQMQ+LGLQPS  TYDGFIRAI + RG   G+EVLK+M++ N+K
Sbjct: 337 HACAKVQNCDLAEQLILQMQTLGLQPSGSTYDGFIRAIATTRGFSEGVEVLKVMREENIK 396

Query: 361 PQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAK 420
           P+DST+A L++ CS+ LELDLAE+ LD+I    +P P +AFL ACD +D+PERA++IFAK
Sbjct: 397 PRDSTLAVLAIICSRELELDLAESFLDEIYEIRSPHPCNAFLEACDVLDRPERAVQIFAK 456

Query: 421 MRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHIS 479
           M++  L+P+IRTYELLFSLFGNVNAPYEEGNM SQVD AKRINAIEMDM  N +QHSH+S
Sbjct: 457 MKKLNLQPNIRTYELLFSLFGNVNAPYEEGNMLSQVDVAKRINAIEMDMMINGLQHSHLS 516

Query: 480 MKNLLKALGAEGMIRELIQY-------FCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIF 532
           +KN LKALG EGMI+ELIQY       F    T + TP YNTVLHSLVEA+ES  A ++F
Sbjct: 517 LKNELKALGTEGMIKELIQYLHAAENRFSRYDTYMITPVYNTVLHSLVEAKESQMATKMF 576

Query: 533 KQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDY 592
           K M + G+PP+AATYNIMIDCCSII CF+SA AL+SMM R+GF P+ +T T L+KILL  
Sbjct: 577 KSMVSSGVPPDAATYNIMIDCCSIIGCFRSALALISMMFRNGFNPEAVTLTGLLKILLRS 636

Query: 593 GDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTC 652
            DFD  L LL+    EGI  DVLLY+T+L+ A EKGRIDVIE I+EQMH   V PDPSTC
Sbjct: 637 EDFDGTLKLLNQGISEGIQLDVLLYDTVLQVASEKGRIDVIELIVEQMHLQGVLPDPSTC 696

Query: 653 HFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDFEDLILAEDSEAESRILQF 712
             VF+ YV+ GF+N+AMEALQVLS+RM+       +EK+++ E+LIL EDSE ESRIL+ 
Sbjct: 697 SHVFAAYVDHGFYNTAMEALQVLSVRMIAGGFKDNDEKQTELENLILGEDSEDESRILKP 756

Query: 713 CEDSNENLAFTAALLQLRWCTIVGFPISWS 742
            +DS E L  T ALLQLRWC I+G+P+SWS
Sbjct: 757 FKDSKEYL--TVALLQLRWCAILGYPVSWS 784


>gi|297842383|ref|XP_002889073.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297334914|gb|EFH65332.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 800

 Score =  854 bits (2207), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/756 (57%), Positives = 555/756 (73%), Gaps = 55/756 (7%)

Query: 37  SRTLTTTMGLNE----ESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFH 92
           SR++TT +G NE    +  SK  Q+QIVDAL  GER  AS LL      ++SL A DF  
Sbjct: 43  SRSVTTLIG-NEFIRCQDESKILQVQIVDALRSGERPGASALLFQFIQGNYSLSAHDFHD 101

Query: 93  ILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERY 152
           IL+YCARSPDP+FVMET+ +M +KEI L+++  L ++Q+LC GG+L++AS  I+ +GE  
Sbjct: 102 ILHYCARSPDPVFVMETYSVMCKKEISLDSRSLLFIVQSLCNGGHLDKASEFIHAVGEDD 161

Query: 153 GIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAV 212
            I PILPVYN FLGACAK  S+ HA+ CL+LMD R VGKNE+TY  LLK     +NLSAV
Sbjct: 162 SISPILPVYNYFLGACAKTRSVYHASKCLELMDQRRVGKNEITYAALLK-----RNLSAV 216

Query: 213 HEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRL 272
           ++IW+ Y+ HYSL I  LRKF+WSFTRL DLKSAYE LQHMV LA  G+L++ +++ G+L
Sbjct: 217 NDIWKHYVNHYSLDILPLRKFIWSFTRLGDLKSAYELLQHMVDLASRGELFV-KSNRGKL 275

Query: 273 RSSRLDIPIPL--------------------------------NALPVMKVLRWSFSDVI 300
            S+ LDIP+P                                 N +P  +VLRWSF+DVI
Sbjct: 276 HSTTLDIPVPAKGETGSEKVAFGVNDHNVEYNSSSKVALPKGHNKIPATRVLRWSFNDVI 335

Query: 301 HACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLK 360
           HACG+++NS LAEQLMLQMQ++GL PSSHTYDGFIRA+    G   GM +LK+MQQ NLK
Sbjct: 336 HACGQSKNSELAEQLMLQMQNIGLLPSSHTYDGFIRAVAFPGGYEYGMTLLKVMQQQNLK 395

Query: 361 PQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAK 420
           P DST+AT+S  CSKA ++DLAE LLDQIS C+   PF+  LAA D++D+PERA+++ A+
Sbjct: 396 PYDSTLATVSAYCSKAFQVDLAEHLLDQISECSYAYPFNNLLAAYDSLDQPERAVRVLAR 455

Query: 421 MRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHIS 479
           M+Q KLRPD+RTYELLFSLFGNVNAPYEEGNM SQVD  KRINAIEMDM RN  QHS IS
Sbjct: 456 MKQLKLRPDMRTYELLFSLFGNVNAPYEEGNMLSQVDCCKRINAIEMDMVRNGFQHSPIS 515

Query: 480 MKNLLKALGAEGMIRELIQYF-------CDSKTPLGTPTYNTVLHSLVEAQESHRAMEIF 532
            +N+L+ALGAEGM+ E+I++          S   LGTPTYN VLHSL+EA E+   + IF
Sbjct: 516 RRNVLRALGAEGMVNEMIRHLQKAENLNVHSNMYLGTPTYNIVLHSLLEANETDMVINIF 575

Query: 533 KQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDY 592
           K+MK+CG P + ATYNIMIDCCSII  +KSA ALVSMM+RDGF P+ +T+TAL+KILL+ 
Sbjct: 576 KRMKSCGCPADVATYNIMIDCCSIIHSYKSACALVSMMIRDGFSPKAVTFTALMKILLND 635

Query: 593 GDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTC 652
           G+F+EALNLLD  +LE I  DVL YNTIL+KA EKG IDVIE+I+EQMH+ KV PDP+TC
Sbjct: 636 GNFEEALNLLDQAALEEIHLDVLSYNTILRKAFEKGMIDVIEYIVEQMHREKVNPDPTTC 695

Query: 653 HFVFSGYVNCGFHNSAMEALQVLSMRMLCEE-VSTLEEKRSDFED-LILAEDSEAESRIL 710
           H+VF+ YV  G+H +A+EAL VLS+RML EE   +L+EK+ + E+  +++ED EAE++I+
Sbjct: 696 HYVFTCYVEKGYHATAIEALNVLSLRMLNEEDKESLQEKKIELEENFVMSEDPEAETKII 755

Query: 711 QFCEDSNENLAFTAALLQLRWCTIVGFPISWSLDRA 746
           +   +S E+LA  AALL LRWC ++G  I WS D++
Sbjct: 756 ELFRNSEEHLA--AALLNLRWCAMLGARIIWSEDQS 789


>gi|255572759|ref|XP_002527312.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533312|gb|EEF35064.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 802

 Score =  853 bits (2205), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/827 (56%), Positives = 569/827 (68%), Gaps = 98/827 (11%)

Query: 1   MYRPLLRTRFQLIADSFCKSKFHKHERRNVANKLELSRTLTTT-----MGLNEESISKAT 55
           M RP  R     IADSF +S   K+ +RNVA      R++ T+     +G  EES  K+ 
Sbjct: 1   MQRPPGRVPLWSIADSFLRSNSIKYGQRNVAGDAGFCRSIATSTGDIILGYGEESTVKSI 60

Query: 56  QMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEE 115
           Q QI+DAL  GER RAS++L +LGHA++ L  +DF  IL YCARSPDPLF METWR+MEE
Sbjct: 61  QKQILDALNLGERGRASNMLSDLGHANNLLRPNDFVDILRYCARSPDPLFAMETWRIMEE 120

Query: 116 KEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMV 175
           KEIG NN   LLM++ALCKGGYLEEA NLI F+GE++G+ P L VYNSFLGAC+K+ +++
Sbjct: 121 KEIGFNNISCLLMVRALCKGGYLEEAYNLINFIGEKHGMNPSLAVYNSFLGACSKMRNLI 180

Query: 176 HANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVW 235
            AN CLDLM  RM GKNE+TY +LLKLAVWQ+NLSAVHEI +DY K YS SI SL+ F+ 
Sbjct: 181 LANKCLDLMAHRMSGKNEITYMQLLKLAVWQQNLSAVHEILKDYTKLYSPSILSLQNFIE 240

Query: 236 SFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLN----------- 284
           SFTRL DL SAYETLQHMV+LA+ G   I  T EG L SSRLDIPIP N           
Sbjct: 241 SFTRLGDLNSAYETLQHMVSLALRGNTSIGSTVEGWLYSSRLDIPIPSNVELGLQRFGLK 300

Query: 285 ---------------------------------------ALPVMKVLRWSFSDVIHACGR 305
                                                  +L  MKVL+ SF DVIHAC +
Sbjct: 301 EKNQQFVPLKADDATNSIEQSMISNLGKEAERAGVDETRSLATMKVLKSSFGDVIHACSQ 360

Query: 306 TQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDST 365
           T+N+ LAEQLMLQ                                LKIMQQ +LKP +ST
Sbjct: 361 TRNARLAEQLMLQ--------------------------------LKIMQQRDLKPYNST 388

Query: 366 IATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-K 424
           +ATLSV CSK LELDLAEALLDQ+S   +P PF+AFL AC+  D+PERAI+I+AKM+Q  
Sbjct: 389 LATLSVVCSKNLELDLAEALLDQLSNYQDPYPFNAFLRACNVTDRPERAIRIWAKMKQLY 448

Query: 425 LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLL 484
           ++PDIRTYELLFSLFGNVNAPYE G MFSQVD AKRINAIEMDM +N ++H+H+SMKNLL
Sbjct: 449 VQPDIRTYELLFSLFGNVNAPYEYGTMFSQVDCAKRINAIEMDMVKNGVRHNHLSMKNLL 508

Query: 485 KALGAEGMIRELIQY-------FCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKT 537
           KALGAEGMIRELI Y       FC +    GTP  NTVLHSLVEA ES+ A+++FK MK+
Sbjct: 509 KALGAEGMIRELIHYLHKEEDLFCHNNIYFGTPICNTVLHSLVEAGESYLALQMFKNMKS 568

Query: 538 CGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDE 597
            G   NAATY +MID CS I+C+K+A ALVSMM+RDGFYPQT TYTALIK+L++ G+F+ 
Sbjct: 569 SGFRLNAATYTMMIDWCSSIQCYKTACALVSMMLRDGFYPQTETYTALIKVLMEDGNFEA 628

Query: 598 ALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFS 657
           ALNLLD  S EGI  DVLLYNTI++KA  + RIDVIE I+EQMH+  ++PD  TC++VFS
Sbjct: 629 ALNLLDQGSSEGIQPDVLLYNTIIRKAMLERRIDVIELIVEQMHRENIKPDSVTCNYVFS 688

Query: 658 GYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDF-EDLILAEDSEAESRILQFCEDS 716
            YV CGFHN+AMEALQVLS+ M+ EE  +L++KR++  ED I +ED EAESRIL++    
Sbjct: 689 TYVECGFHNTAMEALQVLSLWMIEEEEDSLQQKRAELEEDFIYSEDQEAESRILEYFVGC 748

Query: 717 NENLAFTAALLQLRWCTIVGFPISWSLDRASGLEDSQTNSNSRKQEI 763
            EN+A   +LL LRWC I+G+PISWS +         TN  +RK+E+
Sbjct: 749 RENIA--VSLLNLRWCAILGYPISWSPNETLWARRLSTNYCTRKEEL 793


>gi|224057555|ref|XP_002299265.1| predicted protein [Populus trichocarpa]
 gi|222846523|gb|EEE84070.1| predicted protein [Populus trichocarpa]
          Length = 705

 Score =  850 bits (2196), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/730 (59%), Positives = 527/730 (72%), Gaps = 74/730 (10%)

Query: 58  QIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKE 117
           QIV AL  GERSRAS LLL LG    SL   +F  IL YCARSPDPL V+ETW++MEEKE
Sbjct: 1   QIVSALHMGERSRASALLLELGQEKMSLKPHNFVPILQYCARSPDPLLVLETWQIMEEKE 60

Query: 118 IGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHA 177
           +GL++KCYLLM++ALCKGGYLEEASN+I F+GE +GIYP LPVYN+FLGAC+ +    +A
Sbjct: 61  VGLDSKCYLLMIRALCKGGYLEEASNMIDFIGESHGIYPTLPVYNTFLGACSDMSRADYA 120

Query: 178 NLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSF 237
           + CL LM+ RM+GK+EVTY  LLKLAV Q+NLSAV+EIWEDYIKH+S SI +L+KF+WSF
Sbjct: 121 DQCLQLMERRMMGKDEVTYIMLLKLAVSQQNLSAVYEIWEDYIKHFSPSILTLQKFIWSF 180

Query: 238 TRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPI---------------- 281
           TRLRDLKSAYE LQHMV LA+ G  ++  +S G+L  SR+++PI                
Sbjct: 181 TRLRDLKSAYEKLQHMVVLAIRGNTFVQTSSRGQLYPSRVNVPIHPNCELGLQKFDLKDN 240

Query: 282 ----PLNA------------LPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQ 325
               PL+A            +P  ++LRWSF+DVIHAC + +  GLA+QLMLQ       
Sbjct: 241 EQSVPLSANASAFGLDKRKIMPFSRILRWSFNDVIHACAQAKKPGLAKQLMLQ------- 293

Query: 326 PSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEAL 385
                                    LK MQQ NLKP D T+AT+SV CSKALELDLAE L
Sbjct: 294 -------------------------LKTMQQKNLKPCDPTLATISVACSKALELDLAEVL 328

Query: 386 LDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNA 444
           LDQI+ C  P P+++FL ACD MD+PERA+++ AKM++ K++PDIRTY+ LFSL GN NA
Sbjct: 329 LDQITNCPYPYPYNSFLEACDAMDQPERAVRMLAKMKKLKIQPDIRTYQQLFSLVGNTNA 388

Query: 445 PYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQY----- 499
           PYE+G+M S+VDSAKRI AIE DMA+N +QHS  SMKNLLKALG EGM+REL+QY     
Sbjct: 389 PYEDGDMLSRVDSAKRIKAIEKDMAKNGVQHSRESMKNLLKALGKEGMMRELMQYLGVAE 448

Query: 500 --FCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSII 557
             F  S T LG P YNTVLHSLVEA+E   A+ +FK MK  G  PNAATY IMIDCC  I
Sbjct: 449 DLFYHSNTHLGIPIYNTVLHSLVEAEECRMAIALFKHMKASGFEPNAATYCIMIDCCRTI 508

Query: 558 RCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLY 617
           RC+KSA ALVSMM+R GFY QT+ YTALIKILL   +FDEALNLLD    E I  DVLLY
Sbjct: 509 RCYKSACALVSMMLRSGFYLQTVGYTALIKILLQDENFDEALNLLDQGHSEEIKLDVLLY 568

Query: 618 NTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSM 677
           N +L  A +KGRID+IE I+EQMH+ K+QPD +TC+ VF+ YV CGFHN AMEALQVLSM
Sbjct: 569 NPVLHVAKDKGRIDIIELIVEQMHREKIQPDTTTCNNVFTAYVYCGFHNMAMEALQVLSM 628

Query: 678 RMLCEEVSTLEEKRSDFEDLILAEDSEAESRILQFCEDSNENLAFTAALLQLRWCTIVGF 737
           RM+ +E   LEEK+++ EDLIL+ED EAESRIL+  +D  EN+A   ALL LR C I+GF
Sbjct: 629 RMISQEDCVLEEKKAELEDLILSEDKEAESRILEHFKDFEENIA--VALLNLRNCAILGF 686

Query: 738 PISWSLDRAS 747
           PISWS ++++
Sbjct: 687 PISWSPNKSA 696


>gi|334183937|ref|NP_001185409.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332197699|gb|AEE35820.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 801

 Score =  833 bits (2152), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/756 (56%), Positives = 554/756 (73%), Gaps = 54/756 (7%)

Query: 37  SRTLTTTMGLNE----ESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFH 92
           SR++TT +G NE    +  SK  Q+QIVDAL  GER  AS LL  L   ++SL ADDF  
Sbjct: 43  SRSVTTMIG-NEFIRCQDESKILQLQIVDALRSGERQGASALLFKLIQGNYSLSADDFHD 101

Query: 93  ILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERY 152
           IL YCARSPDP+    T+ +M +KEI L+++  L ++++LC GG+L++AS  I+ + E  
Sbjct: 102 ILYYCARSPDPV----TYSVMCKKEISLDSRSLLFIVKSLCNGGHLDKASEFIHAVREDD 157

Query: 153 GIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAV 212
            I P+LP+YN FLGACA+  S+ HA+ CL+LMD R VGKN +TY  LLKLAV+Q+NLS V
Sbjct: 158 RISPLLPIYNFFLGACARTRSVYHASKCLELMDQRRVGKNGITYVALLKLAVFQRNLSTV 217

Query: 213 HEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRL 272
           ++IW+ Y+ HY+L I SLR+F+WSFTRL DLKSAYE LQHMV LA+ G+ ++ +++ G+L
Sbjct: 218 NDIWKHYVNHYNLDILSLRRFIWSFTRLGDLKSAYELLQHMVYLALRGEFFV-KSNRGKL 276

Query: 273 RSSRLDIPIPLN-------------------------ALP-------VMKVLRWSFSDVI 300
            S+RL IP+P                           ALP        ++VLRWSF+DVI
Sbjct: 277 HSTRLYIPVPSKDETGSEKFAFGVTDRIVDCNSSSKVALPKGHNKILAIRVLRWSFNDVI 336

Query: 301 HACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLK 360
           HACG+++NS LAEQLMLQMQ+LGL PSSHTYDGFIRA+    G   GM +LK+MQQ NLK
Sbjct: 337 HACGQSKNSELAEQLMLQMQNLGLLPSSHTYDGFIRAVAFPEGYEYGMTLLKVMQQQNLK 396

Query: 361 PQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAK 420
           P DST+AT++  CSKAL++DLAE LLDQIS C+   PF+  LAA D++D+PERA+++ A+
Sbjct: 397 PYDSTLATVAAYCSKALQVDLAEHLLDQISECSYSYPFNNLLAAYDSLDQPERAVRVLAR 456

Query: 421 MRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHIS 479
           M++ KLRPD+RTYELLFSLFGNVNAPYEEGNM SQVD  KRINAIEMDM RN  QHS IS
Sbjct: 457 MKELKLRPDMRTYELLFSLFGNVNAPYEEGNMLSQVDCCKRINAIEMDMMRNGFQHSPIS 516

Query: 480 MKNLLKALGAEGMIRELIQYF-------CDSKTPLGTPTYNTVLHSLVEAQESHRAMEIF 532
             N+L+ALGAEGM+ E+I++          S   LGTPTYN VLHSL+EA E+   + IF
Sbjct: 517 RLNVLRALGAEGMVNEMIRHLQKAENLSAHSNMYLGTPTYNIVLHSLLEANETDMVINIF 576

Query: 533 KQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDY 592
           K+MK+CG P + ATYNIMIDCCS+I  +KSA ALVSMM+RDGF P+ +T+TAL+KILL+ 
Sbjct: 577 KRMKSCGCPADVATYNIMIDCCSLIHSYKSACALVSMMIRDGFSPKAVTFTALMKILLND 636

Query: 593 GDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTC 652
            +F+EALNLLD  +LE I  DVL YNTIL+KA EKG IDVIE+I+EQMH+ KV PDP+TC
Sbjct: 637 ANFEEALNLLDQAALEEIHLDVLSYNTILRKAFEKGMIDVIEYIVEQMHREKVNPDPTTC 696

Query: 653 HFVFSGYVNCGFHNSAMEALQVLSMRMLCEE-VSTLEEKRSDFED-LILAEDSEAESRIL 710
           H+VFS YV  G+H +A+EAL VLS+RML EE   +L++K+ + E+  +++ED EAE++I+
Sbjct: 697 HYVFSCYVEKGYHATAIEALNVLSLRMLNEEDKESLQDKKIELEENFVMSEDPEAETKII 756

Query: 711 QFCEDSNENLAFTAALLQLRWCTIVGFPISWSLDRA 746
           +    S E+LA  AALL LRWC ++G  I WS D++
Sbjct: 757 ELFRKSEEHLA--AALLNLRWCAMLGGRIIWSEDQS 790


>gi|449503243|ref|XP_004161905.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g76280-like [Cucumis sativus]
          Length = 806

 Score =  830 bits (2143), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/788 (55%), Positives = 561/788 (71%), Gaps = 61/788 (7%)

Query: 5   LLRTRFQL--IADSFCKSKFHKHERRNVANKLELSRTLTTTMGL----NEESISKATQMQ 58
            LR  F+L  IADS  + K H+H R+  A+KL   R L  + G     N    +   QMQ
Sbjct: 16  FLRASFRLGSIADSIYRFKPHEHVRKQDASKLVFHRALLISSGSEIWGNGAESTAFMQMQ 75

Query: 59  IVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEI 118
           IV+AL  G+RSRAS+LL+ LG    SL AD+F  IL+YCA+SPDPLFVMETW++MEE+ I
Sbjct: 76  IVNALRLGDRSRASNLLMVLGQEKFSLTADNFVRILSYCAKSPDPLFVMETWKIMEERGI 135

Query: 119 GLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHAN 178
            LNN C LLM++ALCKGGYL+EA  LI FL E + ++P LP YN FL ACA   SMVHA+
Sbjct: 136 FLNNTCSLLMIEALCKGGYLDEAFGLINFLAESHVMFPALPAYNCFLRACAIRQSMVHAS 195

Query: 179 LCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFT 238
            CLDLMD +MVGKNE TY+ELLKLAV QKNLS+VHEIW D++K+YS S+ SLRKF+WS+ 
Sbjct: 196 QCLDLMDHKMVGKNEATYSELLKLAVCQKNLSSVHEIWRDFVKNYSPSVSSLRKFIWSYA 255

Query: 239 RLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNA------------- 285
           R+ D+KSAY  LQ MV L        N  + GR   S LDIPIP                
Sbjct: 256 RMGDVKSAYTALQKMVTL--------NNGAAGRKLQS-LDIPIPSRTELYRGISVSGIKC 306

Query: 286 ---------LP-------VMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSH 329
                    +P       V KVLRWS +DV+ AC    N GLAEQLM QM  LGLQPSSH
Sbjct: 307 GEVETGPLTVPNNHKSSFVRKVLRWSSNDVMRACSLAGNCGLAEQLMQQMHKLGLQPSSH 366

Query: 330 TYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI 389
           T+DGF+R++VS+RG   GME+LK+MQQ  L+P DST+A +SV CSKALELDLAEALL+++
Sbjct: 367 TFDGFVRSVVSERGFSAGMEILKVMQQRGLEPYDSTLAAVSVSCSKALELDLAEALLERL 426

Query: 390 SRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEE 448
           S C  P PF+AF +ACD MD+PERA+++  KM+Q K+ PD+RTYELL+SLFGNVNAPYEE
Sbjct: 427 SACPYPYPFNAFFSACDMMDQPERAMRMLVKMKQMKVAPDVRTYELLYSLFGNVNAPYEE 486

Query: 449 GNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQY-------FC 501
           G+  SQVD+AKR+  IEMDM ++ IQ+SH SM NLLKALG EGM +E++QY       F 
Sbjct: 487 GDNLSQVDAAKRVRMIEMDMGKHGIQYSHFSMMNLLKALGTEGMKKEVLQYLNLAENLFY 546

Query: 502 DSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFK 561
            + T LG P YNTVLH LV+++E+H A+E+F  MK  G  P+AAT+ +M+DCCS+I C K
Sbjct: 547 YNNTSLGMPVYNTVLHFLVDSKETHMAIELFNNMKRSGFFPDAATFEMMLDCCSVIGCLK 606

Query: 562 SASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTIL 621
           SA AL+S+M+R GF PQ +TYT+L+KI+L +  FD+ALNLLD  S EGI  DV++ NTI+
Sbjct: 607 SAFALLSLMIRSGFCPQILTYTSLVKIVLGFERFDDALNLLDQASSEGIELDVIIMNTIM 666

Query: 622 KKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRM-L 680
           +KACEK RIDVIEF++E+M++ K+ PDPSTC  VFS YVN G+H++AMEALQVLSMRM L
Sbjct: 667 RKACEKARIDVIEFLVEKMNREKIPPDPSTCQNVFSTYVNLGYHSTAMEALQVLSMRMLL 726

Query: 681 CEE--VSTLEEKRSDFEDLILAEDSEAESRILQFCEDSNENLAFTAALLQLRWCTIVGFP 738
           CEE   S  E      E+ +LAED+ A+SRI +F + S E L+F  AL  LRWC ++G+P
Sbjct: 727 CEEDDASVTEY----MENFVLAEDTGADSRIAEFFKCSREYLSF--ALFNLRWCAMLGYP 780

Query: 739 ISWSLDRA 746
           + ++ +++
Sbjct: 781 VCYAPNQS 788


>gi|6573717|gb|AAF17637.1|AC009978_13 T23E18.21 [Arabidopsis thaliana]
          Length = 800

 Score =  818 bits (2114), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/780 (54%), Positives = 547/780 (70%), Gaps = 88/780 (11%)

Query: 52  SKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWR 111
           SK  Q+QIVDAL  GER  AS LL  L   ++SL ADDF  IL YCARSPDP+FVMET+ 
Sbjct: 13  SKILQLQIVDALRSGERQGASALLFKLIQGNYSLSADDFHDILYYCARSPDPVFVMETYS 72

Query: 112 MMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKL 171
           +M +KEI L+++  L ++++LC GG+L++AS  I+ + E   I P+LP+YN FLGACA+ 
Sbjct: 73  VMCKKEISLDSRSLLFIVKSLCNGGHLDKASEFIHAVREDDRISPLLPIYNFFLGACART 132

Query: 172 HSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLR 231
            S+ HA+ CL+LMD R VGKN +TY  LLKLAV+Q+NLS V++IW+ Y+ HY+L I SLR
Sbjct: 133 RSVYHASKCLELMDQRRVGKNGITYVALLKLAVFQRNLSTVNDIWKHYVNHYNLDILSLR 192

Query: 232 KFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLN------- 284
           +F+WSFTRL DLKSAYE LQHMV LA+ G+ ++ +++ G+L S+RL IP+P         
Sbjct: 193 RFIWSFTRLGDLKSAYELLQHMVYLALRGEFFV-KSNRGKLHSTRLYIPVPSKDETGSEK 251

Query: 285 ------------------ALP-------VMKVLRWSFSDVIHACGRTQNSGLAEQLMLQM 319
                             ALP        ++VLRWSF+DVIHACG+++NS LAEQLMLQM
Sbjct: 252 FAFGVTDRIVDCNSSSKVALPKGHNKILAIRVLRWSFNDVIHACGQSKNSELAEQLMLQM 311

Query: 320 QSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALEL 379
           Q+LGL PSSHTYDGFIRA+    G   GM +LK+MQQ NLKP DST+AT++  CSKAL++
Sbjct: 312 QNLGLLPSSHTYDGFIRAVAFPEGYEYGMTLLKVMQQQNLKPYDSTLATVAAYCSKALQV 371

Query: 380 DLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSL 438
           DLAE LLDQIS C+   PF+  LAA D++D+PERA+++ A+M++ KLRPD+RTYELLFSL
Sbjct: 372 DLAEHLLDQISECSYSYPFNNLLAAYDSLDQPERAVRVLARMKELKLRPDMRTYELLFSL 431

Query: 439 FGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNL--------------L 484
           FGNVNAPYEEGNM SQVD  KRINAIEMDM RN  QHS IS  N+              L
Sbjct: 432 FGNVNAPYEEGNMLSQVDCCKRINAIEMDMMRNGFQHSPISRLNVNNGLIVYTFLFLSQL 491

Query: 485 KALGAEGMIRELIQYF-------CDSKTPLGTPTYNTVLHSLVEAQE------------- 524
           +ALGAEGM+ E+I++          S   LGTPTYN VLHSL+EA E             
Sbjct: 492 RALGAEGMVNEMIRHLQKAENLSAHSNMYLGTPTYNIVLHSLLEANEVSFHGLIALSNFH 551

Query: 525 ----------------SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVS 568
                           +   + IFK+MK+CG P + ATYNIMIDCCS+I  +KSA ALVS
Sbjct: 552 WTSIYSNIDRYLNYMQTDMVINIFKRMKSCGCPADVATYNIMIDCCSLIHSYKSACALVS 611

Query: 569 MMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
           MM+RDGF P+ +T+TAL+KILL+  +F+EALNLLD  +LE I  DVL YNTIL+KA EKG
Sbjct: 612 MMIRDGFSPKAVTFTALMKILLNDANFEEALNLLDQAALEEIHLDVLSYNTILRKAFEKG 671

Query: 629 RIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEE-VSTL 687
            IDVIE+I+EQMH+ KV PDP+TCH+VFS YV  G+H +A+EAL VLS+RML EE   +L
Sbjct: 672 MIDVIEYIVEQMHREKVNPDPTTCHYVFSCYVEKGYHATAIEALNVLSLRMLNEEDKESL 731

Query: 688 EEKRSDFED-LILAEDSEAESRILQFCEDSNENLAFTAALLQLRWCTIVGFPISWSLDRA 746
           ++K+ + E+  +++ED EAE++I++    S E+LA  AALL LRWC ++G  I WS D++
Sbjct: 732 QDKKIELEENFVMSEDPEAETKIIELFRKSEEHLA--AALLNLRWCAMLGGRIIWSEDQS 789


>gi|449443982|ref|XP_004139754.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g76280-like [Cucumis sativus]
          Length = 834

 Score =  816 bits (2109), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/807 (53%), Positives = 559/807 (69%), Gaps = 71/807 (8%)

Query: 5   LLRTRFQL--IADSFCKSKFHKHERRNVANKLELSRTLTTTMGL----NEESISKATQMQ 58
            LR  F+L  IADS  + K H+H R+  A+KL   R L  + G     N    +   QMQ
Sbjct: 16  FLRASFRLGSIADSIYRFKPHEHVRKQDASKLVFHRALLISSGSEIWGNGAESTAFMQMQ 75

Query: 59  IVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEI 118
           IV+AL  G+RSRAS+LL+ LG    SL AD+F  IL+YCA+SPDPLFVMETW++MEE+ I
Sbjct: 76  IVNALRLGDRSRASNLLMVLGQEKFSLTADNFVRILSYCAKSPDPLFVMETWKIMEERGI 135

Query: 119 GLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHAN 178
            LNN C LLM++ALCKGGYL+EA  LI FL E + ++P LP YN FL ACA   SMVHA+
Sbjct: 136 FLNNTCSLLMIEALCKGGYLDEAFGLINFLAESHVMFPALPAYNCFLRACAIRQSMVHAS 195

Query: 179 LCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFT 238
            CLDLMD +MVGKNE TY+ELLKLAV QKNLS+VHEIW D++K+YS S+ SLRKF+WS+ 
Sbjct: 196 QCLDLMDHKMVGKNEATYSELLKLAVCQKNLSSVHEIWRDFVKNYSPSVSSLRKFIWSYA 255

Query: 239 RLRDLKSAYETLQHMVAL------------------------------------------ 256
           R+ D+KSAY  LQ MV L                                          
Sbjct: 256 RMGDVKSAYTALQKMVTLNNGAAGRKLQSLDIPIPSRTELYRYNFNFEEKEPSIDEFFYK 315

Query: 257 ------AMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSG 310
                   +G + ++    G + +  L +P    +  V KVLRWS +DV+ AC    N G
Sbjct: 316 KMVPWNGDVGGISVSGIKCGEVETGPLTVPNNHKSSFVRKVLRWSSNDVMRACSLAGNCG 375

Query: 311 LAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLS 370
           LAEQLM QM  LGLQPSSHT+DGF+R++VS+RG   GME+LK+MQQ  L+P DST+A +S
Sbjct: 376 LAEQLMQQMHKLGLQPSSHTFDGFVRSVVSERGFSAGMEILKVMQQRGLEPYDSTLAAVS 435

Query: 371 VECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDI 429
           V CSKALELDLAEALL+++S C  P PF+AF +ACD MD+PERA+++  KM+Q K+ PD+
Sbjct: 436 VSCSKALELDLAEALLERLSACPYPYPFNAFFSACDMMDQPERAMRMLVKMKQMKVAPDV 495

Query: 430 RTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGA 489
           RTYELL+SLFGNVNAPYEEG+  SQVD+AKR+  IEMDM ++ IQ+SH SM NLLKALG 
Sbjct: 496 RTYELLYSLFGNVNAPYEEGDNLSQVDAAKRVRMIEMDMGKHGIQYSHFSMMNLLKALGT 555

Query: 490 EGMIRELIQY-------FCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPP 542
           EGM +E++QY       F  + T LG P YNTVLH LV+++E+H A+E+F  MK  G  P
Sbjct: 556 EGMKKEVLQYLNLAENLFYYNNTSLGMPVYNTVLHFLVDSKETHMAIELFNNMKRSGFFP 615

Query: 543 NAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL 602
           +AAT+ +M+DCCS+I C KSA AL+S+M+R GF PQ +TYT+L+KI+L +  FD+ALNLL
Sbjct: 616 DAATFEMMLDCCSVIGCLKSAFALLSLMIRSGFCPQILTYTSLVKIVLGFERFDDALNLL 675

Query: 603 DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNC 662
           D  S EGI  DV++ NTI++KACEK RIDVIEF++E+M++ K+ PDPSTC  VFS YVN 
Sbjct: 676 DQASSEGIELDVIIMNTIMRKACEKARIDVIEFLVEKMNREKIPPDPSTCQNVFSTYVNL 735

Query: 663 GFHNSAMEALQVLSMRM-LCEE--VSTLEEKRSDFEDLILAEDSEAESRILQFCEDSNEN 719
           G+H++AMEALQVLSMRM LCEE   S  E      E+ +LAED+ A+SRI +F + S E 
Sbjct: 736 GYHSTAMEALQVLSMRMLLCEEDDASVTEY----MENFVLAEDTGADSRIAEFFKCSREY 791

Query: 720 LAFTAALLQLRWCTIVGFPISWSLDRA 746
           L+F  AL  LRWC ++G+ + +S +++
Sbjct: 792 LSF--ALFNLRWCAMLGYSVCYSPNQS 816


>gi|357499079|ref|XP_003619828.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494843|gb|AES76046.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 895

 Score =  807 bits (2085), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/811 (52%), Positives = 538/811 (66%), Gaps = 115/811 (14%)

Query: 48  EESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPL--- 104
           E     + Q+QIV AL  GER +ASHLLL+ GH  HSL ADDF +I  YCA SPDPL   
Sbjct: 13  ESVAGSSVQLQIVKALHSGERKKASHLLLDFGHRSHSLSADDFVNIFKYCAESPDPLLLR 72

Query: 105 ----------FVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGI 154
                     FVME WR+ME K+I +NN C  LM +ALCKG  + +  +++ FL E    
Sbjct: 73  FIPSPFELMKFVMEIWRLMESKDISINNTCSSLMTRALCKGVCINKDFSIMDFLAESRHF 132

Query: 155 YPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLK------------- 201
           YP+LP+YNS L +  ++ ++V A  CLDLM+ +M+GK+EVTYT LLK             
Sbjct: 133 YPVLPLYNSILRSYTEIQNLVQARKCLDLMEKQMIGKSEVTYTALLKVVIKSERTFNVKL 192

Query: 202 -------------------LAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRD 242
                              LAV QKNL AVH IW++YIK YS+SI  LRKFVWSFTRL D
Sbjct: 193 LITWSGPRLKDHLYCPVSQLAVVQKNLPAVHIIWQEYIKLYSMSIVPLRKFVWSFTRLGD 252

Query: 243 LKSAYETLQHMVALAMMGKLYINRT---------------SEGRLRSSRLDI-------- 279
           LKSAY TLQ MV+L M G + I +T               S GRL S+ LDI        
Sbjct: 253 LKSAYRTLQQMVSLVMRGNISIAKTVYGKLYSTRLDIPVPSNGRLGSTILDIRKSKQHDS 312

Query: 280 ----PIPL--------------------------------NALPVMKVLRWSFSDVIHAC 303
               P+ L                                ++LP MKVLRWSF+D+IH C
Sbjct: 313 CILSPMYLPNIVSASKEQQIICMDDKKAKSGEINGLNGKKHSLP-MKVLRWSFNDIIHGC 371

Query: 304 GRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQD 363
              +N  LA +L+LQMQSLGLQPSSHTY+G IRAIVS R   + M +LK MQQ NLK  D
Sbjct: 372 ANEKNYMLAWKLILQMQSLGLQPSSHTYNGLIRAIVSQRRFGDAMRMLKKMQQENLKLVD 431

Query: 364 STIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ 423
           ST+ATLSV  S+ L+LDLAE+LL+QIS C  P P++A LA+CD +++PERA+++FAKMR+
Sbjct: 432 STLATLSVAFSRELQLDLAESLLNQISECLYPHPYNALLASCDALNQPERAVRVFAKMRK 491

Query: 424 -KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKN 482
            KL PD+RTYELLFSLFG VNAPYE+ NM SQVD+AKRINAIE DMA N  QHS++S+KN
Sbjct: 492 IKLLPDMRTYELLFSLFGIVNAPYEDSNMLSQVDAAKRINAIERDMANNGFQHSYLSLKN 551

Query: 483 LLKALGAEGMIRELIQY-------FCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQM 535
           L+K+LG EGMIRELIQY       F  S   LGT  +N VLH LVEAQE H A+EIFK+M
Sbjct: 552 LMKSLGEEGMIRELIQYLHVAENLFLFSNPSLGTDMFNIVLHYLVEAQEGHMAIEIFKKM 611

Query: 536 KTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDF 595
           K CG  P++ TYNIMIDCCSIIR ++SAS L+SMM+R+GF P   TYTAL+KILL+  +F
Sbjct: 612 KLCGCHPDSTTYNIMIDCCSIIRSYRSASLLISMMIREGFCPVACTYTALVKILLEDENF 671

Query: 596 DEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFV 655
           +EA+++L+ + L+GI  DVLL+NT L++AC +GRIDVIEFI+E MHQ KVQPDP+TC +V
Sbjct: 672 NEAVDVLERIKLDGIKLDVLLFNTFLRQACYRGRIDVIEFIVEFMHQEKVQPDPATCGYV 731

Query: 656 FSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDFEDLILAEDSEAESRILQFCED 715
           FS YVN  FHN+A+EALQVLS+RM+ E+ + L+E++   ++ IL ED  +ES I +  ED
Sbjct: 732 FSAYVNSSFHNTAIEALQVLSLRMMSEDGNILKERKDLVDEFILNEDLASESHIFKLFED 791

Query: 716 SNENLAFTAALLQLRWCTIVGFPISWSLDRA 746
           S + +A    LL LRWC I+GFP+  S DR+
Sbjct: 792 SEDEVA--TGLLNLRWCAIIGFPLCESADRS 820


>gi|42563256|ref|NP_177755.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806405|sp|Q9SGQ6.2|PP126_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g76280
 gi|332197697|gb|AEE35818.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 773

 Score =  790 bits (2039), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/756 (54%), Positives = 535/756 (70%), Gaps = 82/756 (10%)

Query: 37  SRTLTTTMGLNE----ESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFH 92
           SR++TT +G NE    +  SK  Q+QIVDAL  GER  AS LL  L   ++SL ADDF  
Sbjct: 43  SRSVTTMIG-NEFIRCQDESKILQLQIVDALRSGERQGASALLFKLIQGNYSLSADDFHD 101

Query: 93  ILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERY 152
           IL YCARSPDP+FVMET+ +M +KEI L+++  L ++++LC GG+L++AS  I+ + E  
Sbjct: 102 ILYYCARSPDPVFVMETYSVMCKKEISLDSRSLLFIVKSLCNGGHLDKASEFIHAVREDD 161

Query: 153 GIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAV 212
            I P+LP+YN FLGACA+  S+ HA+ CL+LMD R VGKN +TY  LLKLAV+Q+NLS V
Sbjct: 162 RISPLLPIYNFFLGACARTRSVYHASKCLELMDQRRVGKNGITYVALLKLAVFQRNLSTV 221

Query: 213 HEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRL 272
           ++IW+ Y+ HY+L I SLR+F+WSFTRL DLKSAYE LQHMV LA+ G+ ++ +++ G+L
Sbjct: 222 NDIWKHYVNHYNLDILSLRRFIWSFTRLGDLKSAYELLQHMVYLALRGEFFV-KSNRGKL 280

Query: 273 RSSRLDIPIPLN-------------------------ALP-------VMKVLRWSFSDVI 300
            S+RL IP+P                           ALP        ++VLRWSF+DVI
Sbjct: 281 HSTRLYIPVPSKDETGSEKFAFGVTDRIVDCNSSSKVALPKGHNKILAIRVLRWSFNDVI 340

Query: 301 HACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLK 360
           HACG+++NS LAEQLMLQ                                LK+MQQ NLK
Sbjct: 341 HACGQSKNSELAEQLMLQ--------------------------------LKVMQQQNLK 368

Query: 361 PQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAK 420
           P DST+AT++  CSKAL++DLAE LLDQIS C+   PF+  LAA D++D+PERA+++ A+
Sbjct: 369 PYDSTLATVAAYCSKALQVDLAEHLLDQISECSYSYPFNNLLAAYDSLDQPERAVRVLAR 428

Query: 421 MRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHIS 479
           M++ KLRPD+RTYELLFSLFGNVNAPYEEGNM SQVD  KRINAIEMDM RN  QHS IS
Sbjct: 429 MKELKLRPDMRTYELLFSLFGNVNAPYEEGNMLSQVDCCKRINAIEMDMMRNGFQHSPIS 488

Query: 480 MKNLLKALGAEGMIRELIQYF-------CDSKTPLGTPTYNTVLHSLVEAQESHRAMEIF 532
             N+L+ALGAEGM+ E+I++          S   LGTPTYN VLHSL+EA E+   + IF
Sbjct: 489 RLNVLRALGAEGMVNEMIRHLQKAENLSAHSNMYLGTPTYNIVLHSLLEANETDMVINIF 548

Query: 533 KQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDY 592
           K+MK+CG P + ATYNIMIDCCS+I  +KSA ALVSMM+RDGF P+ +T+TAL+KILL+ 
Sbjct: 549 KRMKSCGCPADVATYNIMIDCCSLIHSYKSACALVSMMIRDGFSPKAVTFTALMKILLND 608

Query: 593 GDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTC 652
            +F+EALNLLD  +LE I  DVL YNTIL+KA EKG IDVIE+I+EQMH+ KV PDP+TC
Sbjct: 609 ANFEEALNLLDQAALEEIHLDVLSYNTILRKAFEKGMIDVIEYIVEQMHREKVNPDPTTC 668

Query: 653 HFVFSGYVNCGFHNSAMEALQVLSMRMLCEE-VSTLEEKRSDFED-LILAEDSEAESRIL 710
           H+VFS YV  G+H +A+EAL VLS+RML EE   +L++K+ + E+  +++ED EAE++I+
Sbjct: 669 HYVFSCYVEKGYHATAIEALNVLSLRMLNEEDKESLQDKKIELEENFVMSEDPEAETKII 728

Query: 711 QFCEDSNENLAFTAALLQLRWCTIVGFPISWSLDRA 746
           +    S E+LA  AALL LRWC ++G  I WS D++
Sbjct: 729 ELFRKSEEHLA--AALLNLRWCAMLGGRIIWSEDQS 762


>gi|240254375|ref|NP_001031285.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332197698|gb|AEE35819.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 693

 Score =  726 bits (1875), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/653 (56%), Positives = 478/653 (73%), Gaps = 47/653 (7%)

Query: 37  SRTLTTTMGLNE----ESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFH 92
           SR++TT +G NE    +  SK  Q+QIVDAL  GER  AS LL  L   ++SL ADDF  
Sbjct: 43  SRSVTTMIG-NEFIRCQDESKILQLQIVDALRSGERQGASALLFKLIQGNYSLSADDFHD 101

Query: 93  ILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERY 152
           IL YCARSPDP+FVMET+ +M +KEI L+++  L ++++LC GG+L++AS  I+ + E  
Sbjct: 102 ILYYCARSPDPVFVMETYSVMCKKEISLDSRSLLFIVKSLCNGGHLDKASEFIHAVREDD 161

Query: 153 GIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAV 212
            I P+LP+YN FLGACA+  S+ HA+ CL+LMD R VGKN +TY  LLKLAV+Q+NLS V
Sbjct: 162 RISPLLPIYNFFLGACARTRSVYHASKCLELMDQRRVGKNGITYVALLKLAVFQRNLSTV 221

Query: 213 HEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRL 272
           ++IW+ Y+ HY+L I SLR+F+WSFTRL DLKSAYE LQHMV LA+ G+ ++ +++ G+L
Sbjct: 222 NDIWKHYVNHYNLDILSLRRFIWSFTRLGDLKSAYELLQHMVYLALRGEFFV-KSNRGKL 280

Query: 273 RSSRLDIPIPLN-------------------------ALP-------VMKVLRWSFSDVI 300
            S+RL IP+P                           ALP        ++VLRWSF+DVI
Sbjct: 281 HSTRLYIPVPSKDETGSEKFAFGVTDRIVDCNSSSKVALPKGHNKILAIRVLRWSFNDVI 340

Query: 301 HACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLK 360
           HACG+++NS LAEQLMLQMQ+LGL PSSHTYDGFIRA+    G   GM +LK+MQQ NLK
Sbjct: 341 HACGQSKNSELAEQLMLQMQNLGLLPSSHTYDGFIRAVAFPEGYEYGMTLLKVMQQQNLK 400

Query: 361 PQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAK 420
           P DST+AT++  CSKAL++DLAE LLDQIS C+   PF+  LAA D++D+PERA+++ A+
Sbjct: 401 PYDSTLATVAAYCSKALQVDLAEHLLDQISECSYSYPFNNLLAAYDSLDQPERAVRVLAR 460

Query: 421 MRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHIS 479
           M++ KLRPD+RTYELLFSLFGNVNAPYEEGNM SQVD  KRINAIEMDM RN  QHS IS
Sbjct: 461 MKELKLRPDMRTYELLFSLFGNVNAPYEEGNMLSQVDCCKRINAIEMDMMRNGFQHSPIS 520

Query: 480 MKNLLKALGAEGMIRELIQYF-------CDSKTPLGTPTYNTVLHSLVEAQESHRAMEIF 532
             N+L+ALGAEGM+ E+I++          S   LGTPTYN VLHSL+EA E+   + IF
Sbjct: 521 RLNVLRALGAEGMVNEMIRHLQKAENLSAHSNMYLGTPTYNIVLHSLLEANETDMVINIF 580

Query: 533 KQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDY 592
           K+MK+CG P + ATYNIMIDCCS+I  +KSA ALVSMM+RDGF P+ +T+TAL+KILL+ 
Sbjct: 581 KRMKSCGCPADVATYNIMIDCCSLIHSYKSACALVSMMIRDGFSPKAVTFTALMKILLND 640

Query: 593 GDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
            +F+EALNLLD  +LE I  DVL YNTIL+KA EK +I V++  ++ M  NK+
Sbjct: 641 ANFEEALNLLDQAALEEIHLDVLSYNTILRKAFEKVKIFVVK-TLKVMKVNKL 692



 Score = 44.3 bits (103), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 38/178 (21%), Positives = 80/178 (44%), Gaps = 6/178 (3%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           ++N V+H+  +++ S  A ++  QM+  G+ P++ TY+  I   +    ++    L+ +M
Sbjct: 335 SFNDVIHACGQSKNSELAEQLMLQMQNLGLLPSSHTYDGFIRAVAFPEGYEYGMTLLKVM 394

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
            +    P   T   +          D A +LLD +S     +    +N +L       + 
Sbjct: 395 QQQNLKPYDSTLATVAAYCSKALQVDLAEHLLDQISECSYSYP---FNNLLAAYDSLDQP 451

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLE 688
           +    ++ +M + K++PD  T   +FS + N    N+  E   +LS    C+ ++ +E
Sbjct: 452 ERAVRVLARMKELKLRPDMRTYELLFSLFGNV---NAPYEEGNMLSQVDCCKRINAIE 506


>gi|356552042|ref|XP_003544380.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g76280-like [Glycine max]
          Length = 738

 Score =  721 bits (1861), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/728 (52%), Positives = 490/728 (67%), Gaps = 39/728 (5%)

Query: 56  QMQIVDALCRGERSRASHLLLNLG-HAHHSLGADDFFHILNYCARSPDPLFVMETWRMME 114
           Q Q+V+AL  G+R +AS LL + G  + HSL AD F HI  YCARSPDPLFVME  R ME
Sbjct: 2   QRQVVEALHSGDRKKASDLLSDFGSRSRHSLTADHFVHIFEYCARSPDPLFVMEILRFME 61

Query: 115 EKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSM 174
            K + +NN C  LMMQALC GGYLEEA +++ +LG    +YP+LP+YNS L +C  + ++
Sbjct: 62  LKGVSMNNICSSLMMQALCNGGYLEEAFDIVDYLGGSQRLYPVLPLYNSLLRSCTTMQNI 121

Query: 175 VHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFV 234
           + A+ CLDLM+ +MVGKNEVTY ELLKLAV QKNL A H IW++YIK+YS+SI +L +F+
Sbjct: 122 IQASRCLDLMEKKMVGKNEVTYIELLKLAVLQKNLPAAHLIWQEYIKNYSMSIMALDRFI 181

Query: 235 WSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRW 294
           WSFTRL DL+SAY+ L  M++LA  G + I RT  G++ ++RLDIP+P N  P   +L  
Sbjct: 182 WSFTRLGDLESAYKILLEMISLATRGNIPIARTVHGKVYTNRLDIPVPSNKGPGSTMLDL 241

Query: 295 S---------------FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSH---------T 330
                             D I A    Q   +  +     +  GL    H         +
Sbjct: 242 KENKKLDYCMHPPLMYIPDSISASIEQQIICMGNKKAKSTELAGLNGQKHPLLKKALSRS 301

Query: 331 YDGFIRAIVSDRG---LRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLD 387
           +D  I      +     R  M  LK MQQ NLKP DST+A+LS+ CSKAL+LDLAEA L+
Sbjct: 302 FDDIIHGCAKQKNHMLARKLMLQLKKMQQKNLKPYDSTLASLSITCSKALQLDLAEAFLN 361

Query: 388 QISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPY 446
           QIS C  P P++A LA+CD +++ ERAI++FAKM Q K+ P+IRT ELLFSLFG VN  Y
Sbjct: 362 QISECLYPNPYNALLASCDQLNQLERAIRVFAKMEQKKVLPNIRTCELLFSLFGVVNGHY 421

Query: 447 EEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQY------- 499
           E+ +  S+VD AKRINAI+  MA N IQHSH+SM  L++ALG EGMI+ELIQY       
Sbjct: 422 EDSDALSKVDVAKRINAIQKHMANNGIQHSHLSMNKLMRALGEEGMIKELIQYLHVAENL 481

Query: 500 FCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRC 559
           F      LGT  YNTVLH LVEA+ES   + IFK+MK CG  P++ TYNIMIDCC+I++ 
Sbjct: 482 FIYRNPSLGTHMYNTVLHYLVEAKESDTVIAIFKKMKLCGCHPDSETYNIMIDCCTILKS 541

Query: 560 FKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNT 619
           ++SA  L+SMM+R GF+P   TY A+I+ILL+  +F+EALNLL  V L+GI  DVLL+NT
Sbjct: 542 YRSACLLLSMMIRKGFHPVICTYNAIIEILLEDENFNEALNLLKQVILDGIQPDVLLFNT 601

Query: 620 ILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRM 679
           +LK+AC KGRIDVIEFI+E M + KV PD  TC +VFS YV+ GFHN+A+EALQVLS+RM
Sbjct: 602 VLKEACYKGRIDVIEFIVECMRREKVPPDTRTCGYVFSAYVDSGFHNTAIEALQVLSLRM 661

Query: 680 LCEEVSTLEEKRSDFEDLILAED-SEAESRILQFCEDSNENLAFTAALLQLRWCTIVGFP 738
           + E+ + L E  +   + IL+ED +  ES+IL+  EDS + LA    LL LRWC I GFP
Sbjct: 662 MSEDGNILRENTNFVNEFILSEDVAVVESQILKLFEDSEDELAI--GLLNLRWCAIAGFP 719

Query: 739 ISWSLDRA 746
           I  S D++
Sbjct: 720 ICKSADQS 727


>gi|242049564|ref|XP_002462526.1| hypothetical protein SORBIDRAFT_02g027390 [Sorghum bicolor]
 gi|241925903|gb|EER99047.1| hypothetical protein SORBIDRAFT_02g027390 [Sorghum bicolor]
          Length = 769

 Score =  631 bits (1628), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 326/727 (44%), Positives = 467/727 (64%), Gaps = 61/727 (8%)

Query: 74  LLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALC 133
           LL N  H   +L  +DF +IL YCA +PDPLFVMET  +MEEK IG++   Y  +++AL 
Sbjct: 2   LLSNFHHTKEALTKEDFSYILEYCAEAPDPLFVMETLELMEEKAIGMSKSIYRYVIRALS 61

Query: 134 KGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNE 193
           +GGY  EA + +  LGE+   +  +P++N FL A      +  A  CL++++S  +GK+E
Sbjct: 62  RGGYAREALHWLAVLGEKESTHATIPIFNIFLNAFGSRADLKDAECCLEILESLFLGKSE 121

Query: 194 VTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHM 253
           +TY ELLKLAV Q NL A ++IW+D  ++YS SI + R+F+ + T L DL+SAY  LQHM
Sbjct: 122 ITYCELLKLAVLQGNLPAAYDIWKDCSRYYSPSIITQRRFIRALTALGDLQSAYHILQHM 181

Query: 254 VALAMMGKLYINRTSEGRLRSSRLDIPIP-----------------------LNALP--- 287
           V LA     Y+  +S+ R +SSRLDIP+P                       ++A P   
Sbjct: 182 VVLAARSSDYLRVSSKRRYQSSRLDIPVPALNEFEDLTLPSCQGKLATGEHLVDAQPELF 241

Query: 288 ---------------------VMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQP 326
                                V ++LRW+F+DV+HAC +  N  LAE L  +MQ +GLQP
Sbjct: 242 EEKTQSGVDGAANTLKSAPNAVKQILRWAFNDVLHACVQFNNCQLAEHLFTEMQKIGLQP 301

Query: 327 SSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALL 386
           SS TYDGF++ +++ +G+    +V+K M++  +     T+A LSV  S + +LDLAE LL
Sbjct: 302 SSFTYDGFVKIVIAGKGIAYANKVIKAMERRGIGLYSDTLAALSVGHSNSSQLDLAEELL 361

Query: 387 DQISRCTNPK---PFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNV 442
           ++IS    PK     +A L+ C  M++PERA++I AKM+   ++P +RTYELLFSLFG V
Sbjct: 362 ERISE-IKPKHIHAINALLSGCAIMNEPERAVRILAKMKHVNMKPTLRTYELLFSLFGYV 420

Query: 443 NAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCD 502
           N PYEEGN+ S VD +KRI+ IEMDM  N IQHS +SMKNL++A G+EGMI E+++Y   
Sbjct: 421 NVPYEEGNVLSHVDVSKRISIIEMDMFNNGIQHSFVSMKNLIRAFGSEGMIEEMLRYLNI 480

Query: 503 SKTPL-------GTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCS 555
           ++  L        +  Y+  LH+LV+A+E+HRA+ IFK M++C +P N   YN MI+CC 
Sbjct: 481 AENILWNINPYQKSDLYSIALHALVDAKETHRAVMIFKIMRSCSLPTNILIYNTMIECCK 540

Query: 556 IIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVL 615
            + CFKSASAL+S+M+RDGF P  +T+T+L+K++L   DF+ AL+LLD+  +EG+  D+ 
Sbjct: 541 WLPCFKSASALLSLMLRDGFNPTVVTFTSLLKVVLANDDFEWALDLLDICKIEGLQPDIQ 600

Query: 616 LYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
           ++NT+L  A  +G+I V+E+I+E +H+ K+QPDPST  + F  Y     +N+A+EAL VL
Sbjct: 601 IFNTVLSHAYARGKIHVLEYIVECIHRAKIQPDPSTLWYTFCAYEEHELYNTAIEALLVL 660

Query: 676 SMRMLCEEVSTLEEKRSDFEDLILAEDSEAESRILQFCEDSNENLAFTAALLQLRWCTIV 735
           SMRM+ E+VS L EKR  FEDLIL+E+ +AE RI++  +   E   F  ALL LRWC  +
Sbjct: 661 SMRMISEDVSILSEKRIVFEDLILSEEPDAELRIIRAFQAGEE--FFATALLNLRWCATM 718

Query: 736 GFPISWS 742
           G  ISWS
Sbjct: 719 GATISWS 725


>gi|6554490|gb|AAF16672.1|AC012394_21 hypothetical protein; 84465-87513 [Arabidopsis thaliana]
          Length = 558

 Score =  592 bits (1525), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 306/550 (55%), Positives = 394/550 (71%), Gaps = 59/550 (10%)

Query: 253 MVALAMMGKLYINRTSEGRLRSSRLDIPIPLN-------------------------ALP 287
           MV LA+ G+ ++ +++ G+L S+RL IP+P                           ALP
Sbjct: 1   MVYLALRGEFFV-KSNRGKLHSTRLYIPVPSKDETGSEKFAFGVTDRIVDCNSSSKVALP 59

Query: 288 -------VMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVS 340
                   ++VLRWSF+DVIHACG+++NS LAEQLMLQMQ+LGL PSSHTYDGFIRA+  
Sbjct: 60  KGHNKILAIRVLRWSFNDVIHACGQSKNSELAEQLMLQMQNLGLLPSSHTYDGFIRAVAF 119

Query: 341 DRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSA 400
             G   GM +LK+MQQ NLKP DST+AT++  CSKAL++DLAE LLDQIS C+   PF+ 
Sbjct: 120 PEGYEYGMTLLKVMQQQNLKPYDSTLATVAAYCSKALQVDLAEHLLDQISECSYSYPFNN 179

Query: 401 FLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAK 459
            LAA D++D+PERA+++ A+M++ KLRPD+RTYELLFSLFGNVNAPYEEGNM SQVD  K
Sbjct: 180 LLAAYDSLDQPERAVRVLARMKELKLRPDMRTYELLFSLFGNVNAPYEEGNMLSQVDCCK 239

Query: 460 RINAIEMDMARNNIQHSHISMKNL--------------LKALGAEGMIRELIQYF----- 500
           RINAIEMDM RN  QHS IS  N+              L+ALGAEGM+ E+I++      
Sbjct: 240 RINAIEMDMMRNGFQHSPISRLNVNNGLIVYTFLFLSQLRALGAEGMVNEMIRHLQKAEN 299

Query: 501 --CDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIR 558
               S   LGTPTYN VLHSL+EA E+   + IFK+MK+CG P + ATYNIMIDCCS+I 
Sbjct: 300 LSAHSNMYLGTPTYNIVLHSLLEANETDMVINIFKRMKSCGCPADVATYNIMIDCCSLIH 359

Query: 559 CFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYN 618
            +KSA ALVSMM+RDGF P+ +T+TAL+KILL+  +F+EALNLLD  +LE I  DVL YN
Sbjct: 360 SYKSACALVSMMIRDGFSPKAVTFTALMKILLNDANFEEALNLLDQAALEEIHLDVLSYN 419

Query: 619 TILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678
           TIL+KA EKG IDVIE+I+EQMH+ KV PDP+TCH+VFS YV  G+H +A+EAL VLS+R
Sbjct: 420 TILRKAFEKGMIDVIEYIVEQMHREKVNPDPTTCHYVFSCYVEKGYHATAIEALNVLSLR 479

Query: 679 MLCEE-VSTLEEKRSDFED-LILAEDSEAESRILQFCEDSNENLAFTAALLQLRWCTIVG 736
           ML EE   +L++K+ + E+  +++ED EAE++I++    S E+LA  AALL LRWC ++G
Sbjct: 480 MLNEEDKESLQDKKIELEENFVMSEDPEAETKIIELFRKSEEHLA--AALLNLRWCAMLG 537

Query: 737 FPISWSLDRA 746
             I WS D++
Sbjct: 538 GRIIWSEDQS 547


>gi|357167056|ref|XP_003580982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g76280-like [Brachypodium distachyon]
          Length = 799

 Score =  473 bits (1217), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 242/509 (47%), Positives = 346/509 (67%), Gaps = 17/509 (3%)

Query: 245 SAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACG 304
           S +E L+  VA    G    N      + S R+   +    L V K+LRWSF+D+IHAC 
Sbjct: 274 SKHEQLEGYVAFLSAGD---NHVDNSEIDSGRMTKTLRFAPLAVRKILRWSFNDIIHACM 330

Query: 305 RTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDS 364
           R  N  L+EQL L+M  +GL+PS  TYDGFI+++V+ +G+ + ++V+++M +  ++P + 
Sbjct: 331 RLDNCELSEQLFLEMCKIGLRPSRFTYDGFIKSVVAGKGVAHAIKVIEVMDRRGIEPYND 390

Query: 365 TIATLSVECSKALELDLAEALLDQISRCTNPK---PFSAFLAACDTMDKPERAIKIFAKM 421
           T+A LSV  SK L+LDLAE  L++IS    PK    F+A L+ CD  ++PERAI++ AKM
Sbjct: 391 TLAALSVGYSKRLQLDLAEDFLERISE-IQPKYIHAFNALLSGCDIENEPERAIRVLAKM 449

Query: 422 RQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISM 480
           +   L+P++RTYE LFS+FGNVNAPYEEGNM S  +  KRI+ IEMDM  + I+HS +SM
Sbjct: 450 KHLDLKPNLRTYEHLFSVFGNVNAPYEEGNMLSHAEVLKRISIIEMDMLNHEIKHSFLSM 509

Query: 481 KNLLKALGAEGMIRELIQYFCDSKTPLGTPTYN-------TVLHSLVEAQESHRAMEIFK 533
            NL++A GAEGMI E+++YF  ++  L   TY+        VLH+LV+A+E+H+A+  FK
Sbjct: 510 SNLIRAFGAEGMIDEMLRYFNVAENVLWKMTYSQKSDLYGIVLHALVKAKETHKAIRAFK 569

Query: 534 QMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYG 593
            M++CG+P N A YNIMI+CC ++ CFKSASAL+S+M+RDGF P   T+T L+K++L   
Sbjct: 570 VMRSCGLPANIAIYNIMIECCELLPCFKSASALLSLMLRDGFCPTIFTFTYLVKVVLVKE 629

Query: 594 DFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCH 653
           DF  AL+LLD+    GI  D+ ++NTIL +A  KG+I V+E+I+E +H+ K QPD ST  
Sbjct: 630 DFKGALDLLDICVTGGIQPDIQIFNTILSEANAKGQIHVVEYIVECIHRAKTQPDQSTLW 689

Query: 654 FVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDFEDLILAEDSEAESRILQFC 713
           + F  YV+   +N+A+EALQVLSMRM+  + S L+EK +  EDLIL E+ +AE RI++  
Sbjct: 690 YTFCAYVDKELYNTAIEALQVLSMRMISLDASILKEKGAVLEDLILDEEPDAELRIMKAF 749

Query: 714 EDSNENLAFTAALLQLRWCTIVGFPISWS 742
           + + E++    ALL LRWC   G  ISWS
Sbjct: 750 KPTEEHI--VTALLNLRWCLTTGSTISWS 776



 Score =  222 bits (566), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 167/505 (33%), Positives = 265/505 (52%), Gaps = 57/505 (11%)

Query: 55  TQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMME 114
            QM IV+AL +G+R RAS +L NL     +L ++D   IL YCA +PDPLFVMET  +ME
Sbjct: 2   AQMDIVNALRKGDRQRASVMLSNLRRTKEALTSEDISDILEYCAEAPDPLFVMETLELME 61

Query: 115 EKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSM 174
           E  IGL+   Y  + +AL KGG+++EA N +  LG +   +  LP++N FL ACA + ++
Sbjct: 62  ENAIGLSKNNYRSVTRALSKGGHMKEALNWLNSLGGKESTHSPLPIFNIFLSACASIRNL 121

Query: 175 VHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFV 234
             A  CL+ M   +VGK+E+TY ELLKLAV+Q+NLSAV+++W+D  K+YS SI   RKF+
Sbjct: 122 NDAESCLETMGIHLVGKSEITYCELLKLAVFQRNLSAVNDLWKDCNKYYSPSIIIQRKFL 181

Query: 235 WSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIP-LNALPVMKV-- 291
           W+F+ L DL+SAY+ LQ MV LA     ++  + + R +S+RLDIP+P LN +  +K+  
Sbjct: 182 WAFSTLGDLQSAYQILQRMVVLAGESPDHLRVSCKRRYQSTRLDIPVPALNEVEDLKLVL 241

Query: 292 ---LRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSH-TYDGFIRAIVSDRGLRNG 347
              L  SF   +   G   +   A+  +LQ+++   Q S H   +G++  + +     + 
Sbjct: 242 DSDLPSSFEGKVATRGDPID---AQPELLQVET---QSSKHEQLEGYVAFLSAGDNHVDN 295

Query: 348 MEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDT 407
            E+            DS   T +        L  A   + +I R +    F+  + AC  
Sbjct: 296 SEI------------DSGRMTKT--------LRFAPLAVRKILRWS----FNDIIHACMR 331

Query: 408 MDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM 466
           +D  E + ++F +M +  LRP   TY+                ++ +    A  I  IE+
Sbjct: 332 LDNCELSEQLFLEMCKIGLRPSRFTYDGFIK------------SVVAGKGVAHAIKVIEV 379

Query: 467 DMARNNIQHSHISMKNLLKALGAEGMIR-ELIQYFCDSKT---PLGTPTYNTVLHSLVEA 522
            M R  I+  + ++  L  ++G    ++ +L + F +  +   P     +N +L      
Sbjct: 380 -MDRRGIEPYNDTLAAL--SVGYSKRLQLDLAEDFLERISEIQPKYIHAFNALLSGCDIE 436

Query: 523 QESHRAMEIFKQMKTCGIPPNAATY 547
            E  RA+ +  +MK   + PN  TY
Sbjct: 437 NEPERAIRVLAKMKHLDLKPNLRTY 461


>gi|125606055|gb|EAZ45091.1| hypothetical protein OsJ_29730 [Oryza sativa Japonica Group]
          Length = 874

 Score =  466 bits (1198), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 230/491 (46%), Positives = 345/491 (70%), Gaps = 19/491 (3%)

Query: 265 NRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGL 324
           N + +  L + R+  P+ L    V K L WSF+D++HAC +  N  +AEQL+L+MQ +GL
Sbjct: 357 NLSDKSVLDNGRMARPLRLVPATVKKFLLWSFNDIVHACVQLNNCQIAEQLLLEMQRIGL 416

Query: 325 QPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEA 384
           QPS  TYDGFI+A++  +G+   ++V++ M++  ++P + T+A LSV  S++L+L+LAE 
Sbjct: 417 QPSKFTYDGFIKAVMVGKGVAYAIKVIEAMERRGIEPYNDTLAALSVGSSRSLQLNLAED 476

Query: 385 LLDQISRCTNPKP-----FSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSL 438
            L +IS+   P+P     F+A LA CD M++PERA+++ A+MR   L+P++RTYELLFSL
Sbjct: 477 FLARISK---PQPKYIHAFNALLAGCDMMNEPERAVRVLAEMRHLNLKPNLRTYELLFSL 533

Query: 439 FGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQ 498
           FGNVN PYEEGN+ S  D +KRI+ IE DM  N IQHS + MKNL++A GAEGM  E+++
Sbjct: 534 FGNVNVPYEEGNVLSHADVSKRISIIETDMLNNEIQHSFVCMKNLIRAFGAEGMTEEMLK 593

Query: 499 YFCDSKTPL-------GTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI 551
           Y   ++  L        +  Y   LH+LV+A+++H+A++ F  +++ G+P N A YNIMI
Sbjct: 594 YLNVAENVLWNMDPYQKSDLYCIALHALVKAKDTHKAIKTFMTIRSYGLPANVAIYNIMI 653

Query: 552 DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIP 611
           +CC ++ C KSASA++S+M+RDGFYP  +T+T+L+K++L   DF+ AL+LLD   +EGI 
Sbjct: 654 ECCKLLPCVKSASAVLSLMLRDGFYPTILTFTSLVKVVLAREDFEGALDLLDACIIEGIQ 713

Query: 612 HDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEA 671
            D+ ++NT+L +A EKG+I V+E+I+E +H+ K++PD ST  + F  YV+   +N+A+EA
Sbjct: 714 PDIEIFNTVLLEAFEKGQIHVVEYIVECIHRAKIRPDQSTLWYTFCAYVDQELYNTAIEA 773

Query: 672 LQVLSMRMLCEEVSTLEEKRSDFEDLILAEDSEAESRILQFCEDSNENLAFTAALLQLRW 731
           LQVLS+RM+ EE   L+EK    EDLIL+E+ +AE +I++  E + E+LA   ALL LRW
Sbjct: 774 LQVLSVRMISEEADVLKEKGVIVEDLILSEEPDAELKIMKTFE-ATEHLA--TALLNLRW 830

Query: 732 CTIVGFPISWS 742
           C  +G  ISWS
Sbjct: 831 CATMGSTISWS 841



 Score =  204 bits (520), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 109/242 (45%), Positives = 155/242 (64%), Gaps = 3/242 (1%)

Query: 52  SKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWR 111
           +++ Q  IV AL RG+R +AS LL NL   + +L ++DF HIL YCA +PDPLFV E   
Sbjct: 66  TRSIQADIVGALRRGDRQQASLLLSNLQQTNRALTSEDFSHILEYCATAPDPLFVTEALE 125

Query: 112 MMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKL 171
           +MEE  + ++ + Y  + +AL KGGY +EA + +  L E+   +  LP++N FL  C   
Sbjct: 126 LMEENAVHMSQRVYRSVTRALSKGGYSKEAIHWLTLLVEKESSHNYLPIFNIFLSGCGST 185

Query: 172 HSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLR 231
                   CL+ M++  +GK+E+TY ELLKLAV Q+NLSAVH+IW+D  ++Y+ SI   R
Sbjct: 186 TKQSDIEGCLEKMETYFLGKSEITYCELLKLAVSQRNLSAVHDIWKDCTRNYNPSIILQR 245

Query: 232 KFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIP-LNALPVMK 290
           KFV + T L DL+SAY  +QHMV LA  G+   +   +GR + SRLDIP+P L  L  +K
Sbjct: 246 KFVRALTTLGDLRSAYRIMQHMVVLA--GRNTDHLRGKGRYQRSRLDIPVPALTELEDLK 303

Query: 291 VL 292
           +L
Sbjct: 304 IL 305


>gi|218202315|gb|EEC84742.1| hypothetical protein OsI_31738 [Oryza sativa Indica Group]
          Length = 910

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 230/491 (46%), Positives = 345/491 (70%), Gaps = 19/491 (3%)

Query: 265 NRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGL 324
           N + +  L + R+  P+ L    V K L WSF+D++HAC +  N  +AEQL+L+MQ +GL
Sbjct: 393 NLSDKSVLDNGRMARPLRLVPATVKKFLLWSFNDIVHACVQLNNCQIAEQLLLEMQRIGL 452

Query: 325 QPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEA 384
           QPS  TYDGFI+A++  +G+   ++V++ M++  ++P + T+A LSV  S++L+L+LAE 
Sbjct: 453 QPSKFTYDGFIKAVMVGKGVAYAIKVIEAMERRGIEPYNDTLAALSVGSSRSLQLNLAED 512

Query: 385 LLDQISRCTNPKP-----FSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSL 438
            L +IS+   P+P     F+A LA CD M++PERA+++ A+MR   L+P++RTYELLFSL
Sbjct: 513 FLARISK---PQPKYIHAFNALLAGCDMMNEPERAVRVLAEMRHLNLKPNLRTYELLFSL 569

Query: 439 FGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQ 498
           FGNVN PYEEGN+ S  D +KRI+ IE DM  N IQHS + MKNL++A GAEGM  E+++
Sbjct: 570 FGNVNVPYEEGNVLSHADVSKRISIIETDMLNNEIQHSFVCMKNLIRAFGAEGMTEEMLK 629

Query: 499 YFCDSKTPL-------GTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI 551
           Y   ++  L        +  Y   LH+LV+A+++H+A++ F  +++ G+P N A YNIMI
Sbjct: 630 YLNVAENVLWNMDPYQKSDLYCIALHALVKAKDTHKAIKTFMTIRSYGLPANVAIYNIMI 689

Query: 552 DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIP 611
           +CC ++ C KSASA++S+M+RDGFYP  +T+T+L+K++L   DF+ AL+LLD   +EGI 
Sbjct: 690 ECCKLLPCVKSASAVLSLMLRDGFYPTILTFTSLVKVVLAREDFEGALDLLDACIIEGIQ 749

Query: 612 HDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEA 671
            D+ ++NT+L +A EKG+I V+E+I+E +H+ K++PD ST  + F  YV+   +N+A+EA
Sbjct: 750 PDIEIFNTVLLEAFEKGQIHVVEYIVECIHRAKIRPDQSTLWYTFCAYVDQELYNTAIEA 809

Query: 672 LQVLSMRMLCEEVSTLEEKRSDFEDLILAEDSEAESRILQFCEDSNENLAFTAALLQLRW 731
           LQVLS+RM+ EE   L+EK    EDLIL+E+ +AE +I++  E + E+LA   ALL LRW
Sbjct: 810 LQVLSVRMISEEADVLKEKGVIVEDLILSEEPDAELKIMKTFE-ATEHLA--TALLNLRW 866

Query: 732 CTIVGFPISWS 742
           C  +G  ISWS
Sbjct: 867 CATMGSTISWS 877



 Score =  205 bits (521), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 109/242 (45%), Positives = 155/242 (64%), Gaps = 3/242 (1%)

Query: 52  SKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWR 111
           +++ Q  IV AL RG+R +AS LL NL   + +L ++DF HIL YCA +PDPLFV E   
Sbjct: 102 TRSIQADIVGALRRGDRQQASLLLSNLQQTNRALTSEDFSHILEYCATAPDPLFVTEALE 161

Query: 112 MMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKL 171
           +MEE  + ++ + Y  + +AL KGGY +EA + +  L E+   +  LP++N FL  C   
Sbjct: 162 LMEENAVHMSQRVYRSVTRALSKGGYSKEAIHWLTLLVEKESSHNYLPIFNIFLSGCGST 221

Query: 172 HSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLR 231
                   CL+ M++  +GK+E+TY ELLKLAV Q+NLSAVH+IW+D  ++Y+ SI   R
Sbjct: 222 TKQSDIEGCLEKMETYFLGKSEITYCELLKLAVSQRNLSAVHDIWKDCTRNYNPSIILQR 281

Query: 232 KFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIP-LNALPVMK 290
           KFV + T L DL+SAY  +QHMV LA  G+   +   +GR + SRLDIP+P L  L  +K
Sbjct: 282 KFVRALTTLGDLRSAYRIMQHMVVLA--GRNTDHLRGKGRYQRSRLDIPVPALTELEDLK 339

Query: 291 VL 292
           +L
Sbjct: 340 IL 341


>gi|414885888|tpg|DAA61902.1| TPA: hypothetical protein ZEAMMB73_242754 [Zea mays]
          Length = 442

 Score =  384 bits (985), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 190/400 (47%), Positives = 281/400 (70%), Gaps = 14/400 (3%)

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPK---PFSAFLAACDTMDK 410
           M++  ++P   T+A LS   S +L+LDLAE  L++IS    PK    F+A L+ C  M++
Sbjct: 1   MERRGIEPYSDTLAALSEGHSNSLQLDLAEEFLERISE-IKPKHIGSFNALLSGCAIMNE 59

Query: 411 PERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
           PERA++I AKM+   ++P +RTYELLFSLFGNVN PYE+G++ S VD +KRI+ IEMDM 
Sbjct: 60  PERAVRILAKMKHVNMKPTLRTYELLFSLFGNVNVPYEQGDVLSHVDVSKRISIIEMDMF 119

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPL-------GTPTYNTVLHSLVEA 522
            N IQHS +SMKNL++A GAEGMI E+++Y   ++  L        +  Y+T LH+LV+ 
Sbjct: 120 NNGIQHSFVSMKNLIRAFGAEGMIEEMLRYLNIAENTLWNINPHQKSDLYSTALHALVDV 179

Query: 523 QESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTY 582
           +E+HRA+++FK M++C +P N + YN MI+CC  + CFKSASAL+S+M+RDGF P  +T+
Sbjct: 180 KETHRAVKMFKIMRSCSLPTNISIYNTMIECCKWLPCFKSASALLSLMLRDGFNPTVVTF 239

Query: 583 TALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642
           T+L+K++L+  +F+ AL+LLD+  +EG+   +  +NT+L +A  +G+I V+E+I+E +H+
Sbjct: 240 TSLLKVVLENDNFEGALDLLDICKIEGLQPGIQTFNTVLLRAYARGQIHVLEYILECIHR 299

Query: 643 NKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDFEDLILAED 702
           +K+QPDPST  + F  Y     +N+A+E+L VLSMRM+ E+     EKR  FEDLIL+E+
Sbjct: 300 SKIQPDPSTLWYTFCAYEEHELYNTAIESLLVLSMRMISEDAGIPSEKRIVFEDLILSEE 359

Query: 703 SEAESRILQFCEDSNENLAFTAALLQLRWCTIVGFPISWS 742
            +AE RI++  +   E LA   ALL LRWC  +G  +SWS
Sbjct: 360 PDAEFRIIRAFQAGEEFLA--TALLNLRWCATMGATVSWS 397


>gi|302803225|ref|XP_002983366.1| hypothetical protein SELMODRAFT_445481 [Selaginella moellendorffii]
 gi|300149051|gb|EFJ15708.1| hypothetical protein SELMODRAFT_445481 [Selaginella moellendorffii]
          Length = 758

 Score =  285 bits (728), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 201/669 (30%), Positives = 336/669 (50%), Gaps = 39/669 (5%)

Query: 58  QIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKE 117
           ++V+A+  G+  +A  LL +L   +  L A      L  C+ + +     +  R M+E  
Sbjct: 75  RLVEAIRAGQNDKAMELLPDLSK-YEMLTATSCNEFLYQCSLAGNFQLARQIIRFMKELG 133

Query: 118 IGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHA 177
           +  N +C   ++ A+ + G L+EA  ++       G+  +  ++NS L  CA   S +HA
Sbjct: 134 METNERCDTHLLGAMSRAGNLDEAMEMLESATGGDGVDYVF-MFNSVLNGCASAGSSIHA 192

Query: 178 NLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSF 237
           + CL LM SR V KN+ TY ELL+LA  +++LS    +W +    YS S  S R ++ S 
Sbjct: 193 DKCLKLMTSRKVEKNQQTYIELLRLAGKKQDLSLTKSLWIELKSIYSPSFNSYRTYIISL 252

Query: 238 TRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFS 297
            R  DL  A   LQ M          ++  +E      +L   IP     V       F+
Sbjct: 253 CRGSDLGEALIILQEM----------LDHIAE----EMKLSESIPPAVTEV-------FN 291

Query: 298 DVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQN 357
            +I   G+T    LAE +  +M  + +  +  TYD  IRA+V  RG+  G+++++ M+  
Sbjct: 292 AIISTAGKTGQYQLAEMMFSEMNRMEIPVTIVTYDAVIRAVVKGRGVEYGLKLVQNMESR 351

Query: 358 NLKPQDSTIATLSVEC-SKALELDLAEALLDQI-----SRCTNPKPFSAFLAACDTMDKP 411
            ++P DS I    VEC  +  ELD AE LL+Q+     S+      F+    AC   ++ 
Sbjct: 352 GIEP-DSAIYGAIVECYCRNSELDKAENLLEQMLKAKPSQRPTAHAFNFIFQACSLTNEQ 410

Query: 412 ERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           +RA+++   M+  ++ PDI TY  LF  FG+V+ PY  G+  S  D   R+ A+E DM  
Sbjct: 411 DRALRVLRTMKTARVPPDICTYTALFCNFGSVSVPYAGGDQSSHEDLTSRLGALEADMLA 470

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKT---PLGTP-----TYNTVLHSLVEA 522
           + IQHS  S+  L++ LG+EGM+   ++   +++      G P      YNT ++S +  
Sbjct: 471 SGIQHSRQSLTALMRGLGSEGMLGPALKRLLNAEAFSAEDGAPFLDAFAYNTAMYSCIMF 530

Query: 523 QESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTY 582
            +   A E+F +M    + PN  +YNIMI  C   +    A+ L+  +  +G  P ++TY
Sbjct: 531 DQFSEAKELFTRMSAKNLKPNLHSYNIMIYGCLRSKDVTYANELLKRLQDNGLSPDSVTY 590

Query: 583 TALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642
            +LIK+L    + + AL ++  +   GI  D+  +NTI+  A  +GRID+IEF+I+ M  
Sbjct: 591 NSLIKVLCAANELESALEVIQTMDRTGIEADIYSFNTIIGAAAVRGRIDMIEFLIDDMKD 650

Query: 643 NKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDFEDLILAED 702
             + P+  T   V   Y+     + A+EA++ LS RML    S+ +       ++++ ++
Sbjct: 651 RNIPPNSYTILKVMITYIYLKRLDDAIEAVRTLSSRMLEGASSSGKSTIQSAVEVLMQDN 710

Query: 703 SEAESRILQ 711
           SE  S + +
Sbjct: 711 SELVSEMTE 719


>gi|168014765|ref|XP_001759922.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162689052|gb|EDQ75426.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 804

 Score =  228 bits (582), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 135/406 (33%), Positives = 229/406 (56%), Gaps = 14/406 (3%)

Query: 288 VMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNG 347
           V K L+ +F+ +I+A G+     LAE L  +M++LGL+ S +T++  +RA+V  RG+ + 
Sbjct: 263 VRKELQDAFNALINAAGQAGQHKLAESLFSEMRNLGLRLSIYTFNALLRAVVEGRGVSHA 322

Query: 348 MEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT-NPKP----FSAFL 402
           + V++ M+   ++P   T  TL    S++ +LD AEALL ++     N +P    ++  +
Sbjct: 323 LRVVRSMEAVGVRPDTHTFTTLLDGYSRSGKLDKAEALLAKMEDSKPNQRPSIYTYNILI 382

Query: 403 AACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI 461
            AC + + PERA+++FAKM++    PD  TY  L S  G V+   +  + +S+ + A+R+
Sbjct: 383 KACASKNDPERALRVFAKMKESGTAPDSHTYCALLSACGAVSGRPDLSDAWSRKEVAQRV 442

Query: 462 NAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYF--CDS------KTPLGTPTYN 513
            AIE DMA++ + H+  S+  L+  LG+EG++  ++Q    C        K  L T  YN
Sbjct: 443 IAIEKDMAQSGVHHTAASVSALMSVLGSEGIVDAMLQNLRACQETDLTTRKKLLDTTAYN 502

Query: 514 TVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRD 573
           T +++ V++++   A +IF +M++  + P+  TYNI+I+ CS  +   +A  L+ +M + 
Sbjct: 503 TAMNAFVQSKKFDEAWDIFTEMRSLDVRPDIYTYNILINACSHKQSVSTALELMDIMRKA 562

Query: 574 GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVI 633
              P  +TY +LIK++   G+ D  L +L  +   G+  DV  +NT+L  A    R  + 
Sbjct: 563 KIAPDLITYNSLIKVMCHCGELDSGLRVLGEMQDAGVQPDVTTFNTLLASASYHKRKGLA 622

Query: 634 EFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRM 679
           E+++E+M    V PD  TC  V S Y+  G    A EAL VLS RM
Sbjct: 623 EYLVEEMRLCNVAPDTHTCSQVISLYMRSGNLAEASEALSVLSSRM 668



 Score = 87.4 bits (215), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 76/146 (52%)

Query: 108 ETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGA 167
           E +R ME   + +N   Y   ++ LC+ G L+EA  L+  L    G+   L +YN+ L  
Sbjct: 7   EVYRFMERNGLRMNEISYGCFLRTLCRTGQLDEALELLSVLSRSKGVKANLVMYNTVLNG 66

Query: 168 CAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSI 227
           C+   S VHA+ CL LMD + V K+E++Y EL+KL+   ++ S+V   WE+ +    LS 
Sbjct: 67  CSLAKSKVHADKCLALMDRQGVAKDEMSYVELIKLSGLLQDTSSVKRWWEELVTKGELSP 126

Query: 228 FSLRKFVWSFTRLRDLKSAYETLQHM 253
            S    + +  R R L  A   L  M
Sbjct: 127 SSRCTAIVALCRSRALPEALTALTEM 152



 Score = 40.4 bits (93), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 23/100 (23%), Positives = 48/100 (48%), Gaps = 1/100 (1%)

Query: 490 EGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQM-KTCGIPPNAATYN 548
           E M +E+ ++   +   +   +Y   L +L    +   A+E+   + ++ G+  N   YN
Sbjct: 2   EQMAKEVYRFMERNGLRMNEISYGCFLRTLCRTGQLDEALELLSVLSRSKGVKANLVMYN 61

Query: 549 IMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
            +++ CS+ +    A   +++M R G     M+Y  LIK+
Sbjct: 62  TVLNGCSLAKSKVHADKCLALMDRQGVAKDEMSYVELIKL 101


>gi|299471045|emb|CBN78905.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 755

 Score =  125 bits (314), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 124/567 (21%), Positives = 228/567 (40%), Gaps = 71/567 (12%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y   +    + G  E+A  L+  + E+ G+ P +  YNS + AC        A   L  M
Sbjct: 147 YTTAITTCGRQGQWEKALELLREIPEQEGVSPNVFCYNSAIEACGSGDQWEIAVSLLREM 206

Query: 185 DSRMVGKNEVTYTELLKL----AVWQKNLSAVHE-----IWEDYIKHYSLSIFSLRKFVW 235
             R V  +E++Y   +K       W++ +  + E     +  D I + S+     ++  W
Sbjct: 207 ADREVVPDEISYNSAIKACGRGGQWERVIGLLREMPSVGLTPDAITYNSVITGCGKEGQW 266

Query: 236 SFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWS 295
                   K A   L  M A  +  +                                 S
Sbjct: 267 --------KEALSVLTEMSAKGLTPETI-------------------------------S 287

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           ++  I ACGR+     A +++ QM+S G+ P   +YD  I+A          +++L  M 
Sbjct: 288 YNMAIRACGRSGRWKEAVEVLRQMESQGVTPDVISYDAAIKACGGGGQWETSVDLLDEMA 347

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKPE 412
              + P      +  V C K  + + A  LL +++      +   F++ +AAC    + +
Sbjct: 348 GRGVAPNTIHFNSAIVACGKGGQWEKAVELLREVTALGLTPDATSFNSAIAACTKSGRWK 407

Query: 413 RAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471
            A+++  +M  K L+PD  +Y       G       +G  +      +R       M   
Sbjct: 408 EALELLKEMPAKRLKPDAISYNSAIEACG-------KGGQWEMALELRR------QMPTK 454

Query: 472 NIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRA 528
            +  + IS    ++A G  G  +E ++          TP   TYN+ + +  +  +  +A
Sbjct: 455 GLTPNVISSNIAIRACGERGRWQEGLELLRQMPAQGLTPNVITYNSAIKTCGKGGQWEKA 514

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
           +++  +MK   + P++ TYN  I  CS    +K A AL+  M   G  P  ++YTA I  
Sbjct: 515 LDLLAKMKELAMTPDSITYNSAIAACSKRGRWKEAVALLREMPGQGLTPDVISYTAAIDA 574

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
               G ++ A+ LL  +  +G+  +V+ YN+++K     G  +    +++++ +  V PD
Sbjct: 575 YGKNGQWERAVELLRQMPTKGLTPNVITYNSVIKACGRGGEWEKALDLLKELKETAVAPD 634

Query: 649 PSTCHFVFSGYVNCGFHNSAMEALQVL 675
             + +   S    CG      EAL +L
Sbjct: 635 LMSYNLAISA---CGKRGRWEEALDLL 658



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 132/613 (21%), Positives = 251/613 (40%), Gaps = 39/613 (6%)

Query: 87  ADDFFHILNYCARSPDPLFVMETWRMMEEKE-IGLNNKCYLLMMQALCKGGYLEEASNLI 145
           A  +   +  C R       +E  R + E+E +  N  CY   ++A   G   E A +L+
Sbjct: 144 AHSYTTAITTCGRQGQWEKALELLREIPEQEGVSPNVFCYNSAIEACGSGDQWEIAVSLL 203

Query: 146 YFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELL----K 201
             + +R  + P    YNS + AC +          L  M S  +  + +TY  ++    K
Sbjct: 204 REMADRE-VVPDEISYNSAIKACGRGGQWERVIGLLREMPSVGLTPDAITYNSVITGCGK 262

Query: 202 LAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGK 261
              W++ LS + E+     K  +    S    + +  R    K A E L+ M +  +   
Sbjct: 263 EGQWKEALSVLTEM---SAKGLTPETISYNMAIRACGRSGRWKEAVEVLRQMESQGVTPD 319

Query: 262 LY-----INRTSEGRLRSSRLDIPIPLNALPVMKVLRWS--FSDVIHACGRTQNSGLAEQ 314
           +      I     G    + +D+   L+ +    V   +  F+  I ACG+      A +
Sbjct: 320 VISYDAAIKACGGGGQWETSVDL---LDEMAGRGVAPNTIHFNSAIVACGKGGQWEKAVE 376

Query: 315 LMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECS 374
           L+ ++ +LGL P + +++  I A       +  +E+LK M    LKP   +  +    C 
Sbjct: 377 LLREVTALGLTPDATSFNSAIAACTKSGRWKEALELLKEMPAKRLKPDAISYNSAIEACG 436

Query: 375 KALELDLAEALLDQI-SRCTNPKPFSAFLA--ACDTMDKPERAIKIFAKM-RQKLRPDIR 430
           K  + ++A  L  Q+ ++   P   S+ +A  AC    + +  +++  +M  Q L P++ 
Sbjct: 437 KGGQWEMALELRRQMPTKGLTPNVISSNIAIRACGERGRWQEGLELLRQMPAQGLTPNVI 496

Query: 431 TYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAE 490
           TY       G      + G     +D   ++   E+ M  ++I ++     + + A    
Sbjct: 497 TYNSAIKTCG------KGGQWEKALDLLAKMK--ELAMTPDSITYN-----SAIAACSKR 543

Query: 491 GMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATY 547
           G  +E +    +      TP   +Y   + +  +  +  RA+E+ +QM T G+ PN  TY
Sbjct: 544 GRWKEAVALLREMPGQGLTPDVISYTAAIDAYGKNGQWERAVELLRQMPTKGLTPNVITY 603

Query: 548 NIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSL 607
           N +I  C     ++ A  L+  +      P  M+Y   I      G ++EAL+LL  +  
Sbjct: 604 NSVIKACGRGGEWEKALDLLKELKETAVAPDLMSYNLAISACGKRGRWEEALDLLREMPA 663

Query: 608 EGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNS 667
           EG+  DV+ Y + ++    +G  +    ++  M  + V P  ++           G    
Sbjct: 664 EGLTPDVISYTSAIRACNAEGEWEKALGLLNLMGAHGVSPTATSYSLAIEACGKGGRREE 723

Query: 668 AMEALQVLSMRML 680
           A+  ++ ++ R L
Sbjct: 724 AVCLVREMAQRGL 736



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 84/399 (21%), Positives = 160/399 (40%), Gaps = 20/399 (5%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           S++  I ACGR         L+ +M S+GL P + TY+  I     +   +  + VL  M
Sbjct: 217 SYNSAIKACGRGGQWERVIGLLREMPSVGLTPDAITYNSVITGCGKEGQWKEALSVLTEM 276

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQI-SRCTNPK--PFSAFLAACDTMDKP 411
               L P+  +       C ++     A  +L Q+ S+   P    + A + AC    + 
Sbjct: 277 SAKGLTPETISYNMAIRACGRSGRWKEAVEVLRQMESQGVTPDVISYDAAIKACGGGGQW 336

Query: 412 ERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           E ++ +  +M  + + P+   +       G      + G     V+  + + A+      
Sbjct: 337 ETSVDLLDEMAGRGVAPNTIHFNSAIVACG------KGGQWEKAVELLREVTAL------ 384

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHR 527
             +     S  + + A    G  +E ++   +       P   +YN+ + +  +  +   
Sbjct: 385 -GLTPDATSFNSAIAACTKSGRWKEALELLKEMPAKRLKPDAISYNSAIEACGKGGQWEM 443

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A+E+ +QM T G+ PN  + NI I  C     ++    L+  M   G  P  +TY + IK
Sbjct: 444 ALELRRQMPTKGLTPNVISSNIAIRACGERGRWQEGLELLRQMPAQGLTPNVITYNSAIK 503

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
                G +++AL+LL  +    +  D + YN+ +    ++GR      ++ +M    + P
Sbjct: 504 TCGKGGQWEKALDLLAKMKELAMTPDSITYNSAIAACSKRGRWKEAVALLREMPGQGLTP 563

Query: 648 DPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           D  +       Y   G    A+E L+ +  + L   V T
Sbjct: 564 DVISYTAAIDAYGKNGQWERAVELLRQMPTKGLTPNVIT 602



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 112/548 (20%), Positives = 213/548 (38%), Gaps = 46/548 (8%)

Query: 66  GERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCY 125
           G+  R   LL  +     +  A  +  ++  C +       +     M  K +      Y
Sbjct: 229 GQWERVIGLLREMPSVGLTPDAITYNSVITGCGKEGQWKEALSVLTEMSAKGLTPETISY 288

Query: 126 LLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMD 185
            + ++A  + G  +EA  ++  + E  G+ P +  Y++ + AC        +   LD M 
Sbjct: 289 NMAIRACGRSGRWKEAVEVLRQM-ESQGVTPDVISYDAAIKACGGGGQWETSVDLLDEMA 347

Query: 186 SRMVGKNEVTYTELL----KLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLR 241
            R V  N + +   +    K   W+K +  + E+        +    S    + + T+  
Sbjct: 348 GRGVAPNTIHFNSAIVACGKGGQWEKAVELLREV---TALGLTPDATSFNSAIAACTKSG 404

Query: 242 DLKSAYETLQHMVALAMM-GKLYINRTSEGRLRSSRLDIPIPLN-ALPVMKVLRWSFSD- 298
             K A E L+ M A  +    +  N   E   +  + ++ + L   +P   +     S  
Sbjct: 405 RWKEALELLKEMPAKRLKPDAISYNSAIEACGKGGQWEMALELRRQMPTKGLTPNVISSN 464

Query: 299 -VIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQN 357
             I ACG         +L+ QM + GL P+  TY+  I+           +++L  M++ 
Sbjct: 465 IAIRACGERGRWQEGLELLRQMPAQGLTPNVITYNSAIKTCGKGGQWEKALDLLAKMKEL 524

Query: 358 NLKPQDSTIATLSVECSKALELDLAEALLDQI-SRCTNPKPFSAFLAACDTMDKP---ER 413
            + P   T  +    CSK      A ALL ++  +   P   S + AA D   K    ER
Sbjct: 525 AMTPDSITYNSAIAACSKRGRWKEAVALLREMPGQGLTPDVIS-YTAAIDAYGKNGQWER 583

Query: 414 AIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI--NAIEMDMAR 470
           A+++  +M  K L P++ TY  +    G        G     +D  K +   A+  D+  
Sbjct: 584 AVELLRQMPTKGLTPNVITYNSVIKACGR------GGEWEKALDLLKELKETAVAPDLMS 637

Query: 471 NNIQHSHISMK-------NLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQ 523
            N+  S    +       +LL+ + AEG+  ++I             +Y + + +     
Sbjct: 638 YNLAISACGKRGRWEEALDLLREMPAEGLTPDVI-------------SYTSAIRACNAEG 684

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
           E  +A+ +   M   G+ P A +Y++ I+ C      + A  LV  M + G   + ++ +
Sbjct: 685 EWEKALGLLNLMGAHGVSPTATSYSLAIEACGKGGRREEAVCLVREMAQRGLSHRNISNS 744

Query: 584 ALIKILLD 591
            +++ L D
Sbjct: 745 LIVEALGD 752


>gi|293330959|ref|NP_001169662.1| uncharacterized protein LOC100383543 [Zea mays]
 gi|224030695|gb|ACN34423.1| unknown [Zea mays]
 gi|414870691|tpg|DAA49248.1| TPA: hypothetical protein ZEAMMB73_502001 [Zea mays]
          Length = 756

 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 88/332 (26%), Positives = 160/332 (48%), Gaps = 16/332 (4%)

Query: 323 GLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLA 382
           G +P   TY+ F+  +  +  + + ++V+ +M Q    P   T  T+    SK  ELD A
Sbjct: 295 GFEPDQVTYNTFVHCLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEA 354

Query: 383 EALLDQ-ISRCTNPKP--FSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSL 438
           + +++Q + R   P    F+  + A  + ++ E A+ +  ++  K L PD+ T+ +L + 
Sbjct: 355 KGIVNQMVDRGCLPDTTTFNTLIVALCSQNRLEEALDLARELTVKGLSPDVYTFNILINA 414

Query: 439 FGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHI-SMKNLLKALGAEGMIRELI 497
              V  P+    +F ++ S+        D    NI   H+ SM  L+ AL    +++E+ 
Sbjct: 415 LCKVGDPHLGIRLFEEMKSS----GCAPDEVTYNILIDHLCSMGKLVNALD---LLKEME 467

Query: 498 QYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSII 557
              C    P  T TYNT++ +L +      A E+F QM   GI  +A T+N +ID     
Sbjct: 468 SNGC----PRSTVTYNTIIDALCKQMRIEEAEEVFDQMDAHGISRSAVTFNTLIDGLCKA 523

Query: 558 RCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLY 617
           +    A+ L+  MV++G  P  +TY +++      GD  +A ++L+ ++  G   DV+ Y
Sbjct: 524 KRIDDATELIEQMVKEGLQPSNITYNSILTHYCKQGDLKKAADILETMTANGFEIDVVTY 583

Query: 618 NTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649
            T++   C+ GR  V   ++  M    ++P P
Sbjct: 584 GTLINGLCKAGRTQVALKLLRGMRIKGIRPTP 615



 Score = 86.3 bits (212), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 102/464 (21%), Positives = 193/464 (41%), Gaps = 35/464 (7%)

Query: 230 LRKFVWSFTRLRDLKSAYETLQHMV------ALAMMGKLYINRTSEG---RLRSSRLDIP 280
           +R FV S+ RLR    A + +++ +      A   +    +N  +EG   +L  S  +  
Sbjct: 127 VRSFVESYARLRRFDDAVDLVRNQLNTFGVQADTAVYNHLLNVLAEGSRMKLLESVYNEM 186

Query: 281 IPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVS 340
                 P +  L    + +I A  R      A  ++ +M S  + P   T+   ++  + 
Sbjct: 187 TDRGIQPDVVTL----NTLIKALCRAHQVRTAVLMLEEMSSHAVAPDETTFTTLMQGFIE 242

Query: 341 DRGLRNGMEVLKIMQQNNLKPQDSTIATL-SVECSKALELDLAEALLDQISRCTNPK--P 397
           +  +   + V   M +    P   T+  L +  C      D    +  +I+    P    
Sbjct: 243 EGSIEAALRVKTKMMETGCSPTRVTVNVLINGYCKMGRVEDALGYIQKEIADGFEPDQVT 302

Query: 398 FSAFLAACDTMDKPERAIKIFAKMRQKLR-PDIRTYELLFSLFGNVNAPYEEGNMFSQVD 456
           ++ F+           A+K+   M Q+   PD+ TY  +      +N   + G    ++D
Sbjct: 303 YNTFVHCLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTV------INCLSKNG----ELD 352

Query: 457 SAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYN 513
            AK    I   M          +   L+ AL ++  + E +    +      +P   T+N
Sbjct: 353 EAK---GIVNQMVDRGCLPDTTTFNTLIVALCSQNRLEEALDLARELTVKGLSPDVYTFN 409

Query: 514 TVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID-CCSIIRCFKSASALVSMMVR 572
            ++++L +  + H  + +F++MK+ G  P+  TYNI+ID  CS+ +   +A  L+  M  
Sbjct: 410 ILINALCKVGDPHLGIRLFEEMKSSGCAPDEVTYNILIDHLCSMGK-LVNALDLLKEMES 468

Query: 573 DGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDV 632
           +G    T+TY  +I  L      +EA  + D +   GI    + +NT++   C+  RID 
Sbjct: 469 NGCPRSTVTYNTIIDALCKQMRIEEAEEVFDQMDAHGISRSAVTFNTLIDGLCKAKRIDD 528

Query: 633 IEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
              +IEQM +  +QP   T + + + Y   G    A + L+ ++
Sbjct: 529 ATELIEQMVKEGLQPSNITYNSILTHYCKQGDLKKAADILETMT 572



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 54/241 (22%), Positives = 105/241 (43%), Gaps = 3/241 (1%)

Query: 450 NMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGT 509
           N+ ++    K + ++  +M    IQ   +++  L+KAL     +R  +    +  +    
Sbjct: 168 NVLAEGSRMKLLESVYNEMTDRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHAVA 227

Query: 510 P---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASAL 566
           P   T+ T++   +E      A+ +  +M   G  P   T N++I+    +   + A   
Sbjct: 228 PDETTFTTLMQGFIEEGSIEAALRVKTKMMETGCSPTRVTVNVLINGYCKMGRVEDALGY 287

Query: 567 VSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE 626
           +   + DGF P  +TY   +  L   G    AL ++DL+  EG   DV  YNT++    +
Sbjct: 288 IQKEIADGFEPDQVTYNTFVHCLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSK 347

Query: 627 KGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
            G +D  + I+ QM      PD +T + +     +      A++  + L+++ L  +V T
Sbjct: 348 NGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALCSQNRLEEALDLARELTVKGLSPDVYT 407

Query: 687 L 687
            
Sbjct: 408 F 408



 Score = 49.3 bits (116), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 66/292 (22%), Positives = 117/292 (40%), Gaps = 18/292 (6%)

Query: 91  FHIL-NYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLG 149
           F+IL N   +  DP   +  +  M+      +   Y +++  LC  G L  A +L+  + 
Sbjct: 408 FNILINALCKVGDPHLGIRLFEEMKSSGCAPDEVTYNILIDHLCSMGKLVNALDLLKEM- 466

Query: 150 ERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNL 209
           E  G       YN+ + A  K   +  A    D MD+  + ++ VT+  L+      K +
Sbjct: 467 ESNGCPRSTVTYNTIIDALCKQMRIEEAEEVFDQMDAHGISRSAVTFNTLIDGLCKAKRI 526

Query: 210 SAVHEIWEDYIKH-YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA------LAMMGKL 262
               E+ E  +K     S  +    +  + +  DLK A + L+ M A      +   G L
Sbjct: 527 DDATELIEQMVKEGLQPSNITYNSILTHYCKQGDLKKAADILETMTANGFEIDVVTYGTL 586

Query: 263 YINRTSEGRLRSSRLDIPIPLNALPVMKVLR---WSFSDVIHACGRTQNSGLAEQLMLQM 319
            IN    G  ++ R  + + L     +K +R    +++ VI +  R  N   A  L  +M
Sbjct: 587 -IN----GLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALSLFREM 641

Query: 320 QSLGLQPSSHTYDGFIRAIVSDRG-LRNGMEVLKIMQQNNLKPQDSTIATLS 370
             +G  P + TY    R +    G ++   + L  M      P+ S+   L+
Sbjct: 642 TEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFLVEMVNKGFMPEFSSFRMLA 693



 Score = 40.8 bits (94), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 34/146 (23%), Positives = 63/146 (43%), Gaps = 10/146 (6%)

Query: 542 PNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNL 601
           P+ A Y  +I        F     LV  M R+G         + ++       FD+A++L
Sbjct: 87  PSRAVYEEIIQKLGTAGAFDLMEGLVREMRREGHEAGAGVVRSFVESYARLRRFDDAVDL 146

Query: 602 L-DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYV 660
           + + ++  G+  D  +YN +L    E  R+ ++E +  +M    +QPD  T + +     
Sbjct: 147 VRNQLNTFGVQADTAVYNHLLNVLAEGSRMKLLESVYNEMTDRGIQPDVVTLNTLIKAL- 205

Query: 661 NCGFHNSAMEALQVLSMRMLCEEVST 686
            C  H       QV +  ++ EE+S+
Sbjct: 206 -CRAH-------QVRTAVLMLEEMSS 223


>gi|242033891|ref|XP_002464340.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
 gi|241918194|gb|EER91338.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
          Length = 758

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 157/332 (47%), Gaps = 16/332 (4%)

Query: 323 GLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLA 382
           G +P   TY+ F+  +  +  + + ++V+ +M Q    P   T  T+    SK  ELD A
Sbjct: 297 GFEPDQVTYNTFVHGLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEA 356

Query: 383 EALLDQ-ISRCTNPKP--FSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSL 438
           + +++Q + R   P    F+  + A  + ++ E A+ +  ++  K L PD+ T+ +L + 
Sbjct: 357 KGIVNQMVDRGCLPDTTTFNTLIVALSSQNRLEEALDLARELTVKGLSPDVYTFNILINA 416

Query: 439 FGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHI-SMKNLLKALGAEGMIRELI 497
              V  P+    +F ++ S+        D    NI   H+ SM  L  AL       +L+
Sbjct: 417 LCKVGDPHLGIRLFEEMKSS----GCTPDEVTYNILIDHLCSMGKLGNAL-------DLL 465

Query: 498 QYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSII 557
                +  P  T TYNT++ +L +      A E+F QM   GI  +A T+N +ID     
Sbjct: 466 NEMESNGCPRSTVTYNTIIDALCKKMRIEEAEEVFDQMDAQGISRSAVTFNTLIDGLCKA 525

Query: 558 RCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLY 617
           +    A+ L+  MV++G  P  +TY +++      G+  +A ++L+ ++  G   DV+ Y
Sbjct: 526 KRIDDATELIEQMVKEGLQPNNITYNSILTHYCKQGNIKKAADILETMTANGFEIDVVTY 585

Query: 618 NTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649
            T++   C+ GR  V   ++  M    ++P P
Sbjct: 586 GTLINGLCKAGRTQVALKLLRGMRIKGIRPTP 617



 Score = 90.9 bits (224), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 87/390 (22%), Positives = 169/390 (43%), Gaps = 22/390 (5%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           + + +I A  R      A  ++ +M S G+ P   T+   ++  + +  +   + V   M
Sbjct: 199 TLNTLIKALCRAHQVRTAVLMLEEMSSHGVAPDETTFTTLMQGFIEEGSIEAALRVKAKM 258

Query: 355 QQNNLKPQDSTIATL-SVECSKALELDLAEALLDQISRCTNPK--PFSAFLAACDTMDKP 411
            +    P   T+  L +  C      D    +  +I+    P    ++ F+         
Sbjct: 259 MEAGCSPTGVTVNVLINGYCKMGRVEDALGYIQQEIADGFEPDQVTYNTFVHGLCQNGHV 318

Query: 412 ERAIKIFAKMRQKLR-PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
             A+K+   M Q+   PD+ TY  +      +N   + G    ++D AK    I   M  
Sbjct: 319 SHALKVMDLMLQEGHDPDVFTYNTV------INCLSKNG----ELDEAK---GIVNQMVD 365

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHR 527
                   +   L+ AL ++  + E +    +      +P   T+N ++++L +  + H 
Sbjct: 366 RGCLPDTTTFNTLIVALSSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHL 425

Query: 528 AMEIFKQMKTCGIPPNAATYNIMID-CCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
            + +F++MK+ G  P+  TYNI+ID  CS+ +   +A  L++ M  +G    T+TY  +I
Sbjct: 426 GIRLFEEMKSSGCTPDEVTYNILIDHLCSMGK-LGNALDLLNEMESNGCPRSTVTYNTII 484

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
             L      +EA  + D +  +GI    + +NT++   C+  RID    +IEQM +  +Q
Sbjct: 485 DALCKKMRIEEAEEVFDQMDAQGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQ 544

Query: 647 PDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
           P+  T + + + Y   G    A + L+ ++
Sbjct: 545 PNNITYNSILTHYCKQGNIKKAADILETMT 574



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/241 (22%), Positives = 104/241 (43%), Gaps = 3/241 (1%)

Query: 450 NMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGT 509
           N+  +    K + ++  +M    IQ   +++  L+KAL     +R  +    +  +    
Sbjct: 170 NVLVEGSKLKLLESVYNEMTGRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHGVA 229

Query: 510 P---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASAL 566
           P   T+ T++   +E      A+ +  +M   G  P   T N++I+    +   + A   
Sbjct: 230 PDETTFTTLMQGFIEEGSIEAALRVKAKMMEAGCSPTGVTVNVLINGYCKMGRVEDALGY 289

Query: 567 VSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE 626
           +   + DGF P  +TY   +  L   G    AL ++DL+  EG   DV  YNT++    +
Sbjct: 290 IQQEIADGFEPDQVTYNTFVHGLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSK 349

Query: 627 KGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
            G +D  + I+ QM      PD +T + +     +      A++  + L+++ L  +V T
Sbjct: 350 NGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALSSQNRLEEALDLARELTVKGLSPDVYT 409

Query: 687 L 687
            
Sbjct: 410 F 410



 Score = 69.7 bits (169), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 105/564 (18%), Positives = 227/564 (40%), Gaps = 82/564 (14%)

Query: 153 GIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAV 212
           GI P +   N+ + A  + H +  A L L+ M S  V  +E T+T L++  + + ++ A 
Sbjct: 192 GIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHGVAPDETTFTTLMQGFIEEGSIEAA 251

Query: 213 HEIWEDYIKHY-SLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMM-GKLYINRTSEG 270
             +    ++   S +  ++   +  + ++  ++ A   +Q  +A      ++  N    G
Sbjct: 252 LRVKAKMMEAGCSPTGVTVNVLINGYCKMGRVEDALGYIQQEIADGFEPDQVTYNTFVHG 311

Query: 271 RLRSSRLDIPIPLNALPVMKVL--------RWSFSDVIHACGRTQNSGLAEQLMLQMQSL 322
             ++  +      +AL VM ++         ++++ VI+   +      A+ ++ QM   
Sbjct: 312 LCQNGHVS-----HALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDR 366

Query: 323 GLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLA 382
           G  P + T++  I A+ S   L   +++ + +    L P   T   L     K  +  L 
Sbjct: 367 GCLPDTTTFNTLIVALSSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLG 426

Query: 383 EALLDQI--SRCT-NPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRP-DIRTYELLFSL 438
             L +++  S CT +   ++  +    +M K   A+ +  +M     P    TY  +   
Sbjct: 427 IRLFEEMKSSGCTPDEVTYNILIDHLCSMGKLGNALDLLNEMESNGCPRSTVTYNTIIDA 486

Query: 439 FGNVNAPYEEGNMFSQVDS-------------------AKRIN-AIEM--DMARNNIQHS 476
                   E   +F Q+D+                   AKRI+ A E+   M +  +Q +
Sbjct: 487 LCKKMRIEEAEEVFDQMDAQGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPN 546

Query: 477 HISMKNLLKALGAEGMIR---ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFK 533
           +I+  ++L     +G I+   ++++    +   +   TY T+++ L +A  +  A+++ +
Sbjct: 547 NITYNSILTHYCKQGNIKKAADILETMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLR 606

Query: 534 QMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYG 593
            M+  GI P    YN                                    +I+ L    
Sbjct: 607 GMRIKGIRPTPKAYN-----------------------------------PVIQSLFRRN 631

Query: 594 DFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI--DVIEFIIEQMHQNKVQPDPST 651
           +  +ALNL   ++  G P D L Y  + +  C  G    +  +F++E +++    P+ S+
Sbjct: 632 NLRDALNLFREMTEVGEPPDALTYKIVFRSLCRGGGPIKEAFDFLVEMVNKG-FMPEFSS 690

Query: 652 CHFVFSGYVNCGFHNSAMEALQVL 675
              +  G +N G  +  + A++++
Sbjct: 691 FRMLAEGLLNLGMDDYLISAIELI 714



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/167 (21%), Positives = 73/167 (43%)

Query: 509 TPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVS 568
           T  +N +L+ LVE  +      ++ +M   GI P+  T N +I         ++A  ++ 
Sbjct: 162 TVVFNHLLNVLVEGSKLKLLESVYNEMTGRGIQPDVVTLNTLIKALCRAHQVRTAVLMLE 221

Query: 569 MMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
            M   G  P   T+T L++  ++ G  + AL +   +   G     +  N ++   C+ G
Sbjct: 222 EMSSHGVAPDETTFTTLMQGFIEEGSIEAALRVKAKMMEAGCSPTGVTVNVLINGYCKMG 281

Query: 629 RIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
           R++     I+Q   +  +PD  T +    G    G  + A++ + ++
Sbjct: 282 RVEDALGYIQQEIADGFEPDQVTYNTFVHGLCQNGHVSHALKVMDLM 328



 Score = 45.1 bits (105), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 53/273 (19%), Positives = 107/273 (39%), Gaps = 34/273 (12%)

Query: 91  FHIL-NYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLG 149
           F+IL N   +  DP   +  +  M+      +   Y +++  LC  G L  A +L+  + 
Sbjct: 410 FNILINALCKVGDPHLGIRLFEEMKSSGCTPDEVTYNILIDHLCSMGKLGNALDLLNEM- 468

Query: 150 ERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNL 209
           E  G       YN+ + A  K   +  A    D MD++ + ++ VT+  L+      K +
Sbjct: 469 ESNGCPRSTVTYNTIIDALCKKMRIEEAEEVFDQMDAQGISRSAVTFNTLIDGLCKAKRI 528

Query: 210 SAVHEIWEDYIKH-YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTS 268
               E+ E  +K     +  +    +  + +  ++K A + L+ M A             
Sbjct: 529 DDATELIEQMVKEGLQPNNITYNSILTHYCKQGNIKKAADILETMTA------------- 575

Query: 269 EGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSS 328
                          N   +  V   +  + +   GRTQ   +A +L+  M+  G++P+ 
Sbjct: 576 ---------------NGFEIDVVTYGTLINGLCKAGRTQ---VALKLLRGMRIKGIRPTP 617

Query: 329 HTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKP 361
             Y+  I+++     LR+ + + + M +    P
Sbjct: 618 KAYNPVIQSLFRRNNLRDALNLFREMTEVGEPP 650


>gi|403366299|gb|EJY82949.1| hypothetical protein OXYTRI_19434 [Oxytricha trifallax]
          Length = 1420

 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 145/620 (23%), Positives = 260/620 (41%), Gaps = 91/620 (14%)

Query: 128 MMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSR 187
           M++  C+   L +A N++  + ER GI P   +YNS +  C+K + +  A L  D M   
Sbjct: 372 MIKGYCRAQRLPQALNVLSIMKER-GIKPDEVLYNSIIDGCSKNNQIAKAFLLYDEMLGE 430

Query: 188 MVGKNEVTYTELLKLAVWQKNLS----AVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDL 243
            V    +T+  L+   V   N       + ++ E  +K  + +  +L K + S  + +DL
Sbjct: 431 GVTPTTITFNSLIDCCVRSGNQDQAWRVLEQMKEKQVKPDNYTYSTLFKGIKSENQRQDL 490

Query: 244 KSA---YETLQH--------------------------------MVALAMMGKLYINRTS 268
           + A   Y  LQ+                                 +      ++ ++ T 
Sbjct: 491 EKAFVLYNQLQNSNDFTPDEILFNVLLDACINCKQLDRAVELFKQLKPQSQPQIQVSNTD 550

Query: 269 EGRLRSSRLDIPIPLNALPV---------MKVLRWSFSDVIHACGRTQNSGLAEQLMLQM 319
           +     S  D P      P          M+    SF+ +I  C + +   LA ++   M
Sbjct: 551 DADNSLSLEDSPDSAKNAPAVVNSSNHHFMRPDEISFNTIIKGCAQEKKLQLAFEMFNLM 610

Query: 320 QSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL---------- 369
           +   L+P+  TY+  I A V    L +  ++L  MQQNN+ P + T +TL          
Sbjct: 611 KMQCLKPNDVTYNSLIDACVRCNRLNSAWQLLSEMQQNNIVPDNFTYSTLIKGIRAENQS 670

Query: 370 SVECSKALELDLAEALLDQISRCTNP-KP----FSAFLAACDTMDKPERAIKIFAKMR-Q 423
               S  ++L+ A ALL+Q+ +     KP    ++  + AC       RA+ +F +M+  
Sbjct: 671 QNGISNPMDLEKAFALLEQMKQSNGGVKPDEILYNCLIDACVRFHDVNRAVAVFQEMQFS 730

Query: 424 KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNL 483
            ++P   TY +L   +G+ N          Q+D+A     +   M  N +  + ++   L
Sbjct: 731 NIKPSSVTYGILIKAYGSAN----------QLDNAF---FVFKKMKDNCLIPNSVTYGCL 777

Query: 484 LKALGAEGMIRELIQYFCDSK---TPLGTPTYNTVLHSLVEAQESHRAMEIFKQMK-TCG 539
           + A      I   ++ F   K     L T  + T++    ++ +  +A+E+++ MK    
Sbjct: 778 IDACVKNNQIERAMEVFETMKRDGVQLNTIIFTTLIKGFAKSFKLDQALEVYQIMKMDDK 837

Query: 540 IPPNAATYNIMIDCCSIIRC--FKSASALVSMMVRDGFY--PQTMTYTALIKILLDYGDF 595
           I PN  T+N +IDCC  IRC   K A  +   M +   +  P  +TY+ +IK      + 
Sbjct: 838 IKPNNVTFNSLIDCC--IRCNSIKKAMEIFEEMKQPISHTKPDLITYSTMIKGFCREKNI 895

Query: 596 DEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFV 655
            +AL +L+ +    I  D +LYN++L   C+   I++   + + M   K++P   T   +
Sbjct: 896 QQALIMLNDMEKNNIMADEVLYNSLLDGCCKANEIEMALKVYKNMEILKIKPSNVTYSIL 955

Query: 656 FSGYVNCGFHNSAMEALQVL 675
              Y   G   +  +AL VL
Sbjct: 956 IKIY---GKQRNLPKALGVL 972



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 112/513 (21%), Positives = 206/513 (40%), Gaps = 75/513 (14%)

Query: 161  YNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI 220
            +N+ +  CA+   +  A    +LM  + +  N+VTY  L+   V    L++  ++  +  
Sbjct: 587  FNTIIKGCAQEKKLQLAFEMFNLMKMQCLKPNDVTYNSLIDACVRCNRLNSAWQLLSEMQ 646

Query: 221  KH--------YSLSIFSLRKFVWS---FTRLRDLKSAYETLQHMVALAMMGKLYINRTSE 269
            ++        YS  I  +R    S    +   DL+ A+  L+ M            + S 
Sbjct: 647  QNNIVPDNFTYSTLIKGIRAENQSQNGISNPMDLEKAFALLEQM------------KQSN 694

Query: 270  GRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSH 329
            G ++   +                  ++ +I AC R  +   A  +  +MQ   ++PSS 
Sbjct: 695  GGVKPDEI-----------------LYNCLIDACVRFHDVNRAVAVFQEMQFSNIKPSSV 737

Query: 330  TYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI 389
            TY   I+A  S   L N   V K M+ N L P   T   L   C K  +++ A  + + +
Sbjct: 738  TYGILIKAYGSANQLDNAFFVFKKMKDNCLIPNSVTYGCLIDACVKNNQIERAMEVFETM 797

Query: 390  SRCT---NPKPFSAFLAACDTMDKPERAIKIFA--KMRQKLRPDIRTYELLFSLFGNVNA 444
             R     N   F+  +       K ++A++++   KM  K++P+  T+  L         
Sbjct: 798  KRDGVQLNTIIFTTLIKGFAKSFKLDQALEVYQIMKMDDKIKPNNVTFNSL--------- 848

Query: 445  PYEEGNMFSQVDSAKRINAIEMDMA-----RNNIQHSH---ISMKNLLKALGAEGMIREL 496
                      +D   R N+I+  M      +  I H+    I+   ++K    E  I++ 
Sbjct: 849  ----------IDCCIRCNSIKKAMEIFEEMKQPISHTKPDLITYSTMIKGFCREKNIQQA 898

Query: 497  IQYFCD---SKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC 553
            +    D   +        YN++L    +A E   A++++K M+   I P+  TY+I+I  
Sbjct: 899  LIMLNDMEKNNIMADEVLYNSLLDGCCKANEIEMALKVYKNMEILKIKPSNVTYSILIKI 958

Query: 554  CSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHD 613
                R    A  ++  M +DG  P  + YT L++  +       A  L   + ++GI  D
Sbjct: 959  YGKQRNLPKALGVLEEMKKDGIRPGLIVYTCLLQTCIKSRQLKTAEQLFHDMRIQGIRGD 1018

Query: 614  VLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
             L Y T++       + D I  +++    +KVQ
Sbjct: 1019 QLTYQTMINGCLYSQKFDSILILLKDASDSKVQ 1051



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 79/169 (46%), Gaps = 4/169 (2%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           T++ ++     AQ   +A+ +   MK  GI P+   YN +ID CS       A  L   M
Sbjct: 368 TFSCMIKGYCRAQRLPQALNVLSIMKERGIKPDEVLYNSIIDGCSKNNQIAKAFLLYDEM 427

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKK-ACEKGR 629
           + +G  P T+T+ +LI   +  G+ D+A  +L+ +  + +  D   Y+T+ K    E  R
Sbjct: 428 LGEGVTPTTITFNSLIDCCVRSGNQDQAWRVLEQMKEKQVKPDNYTYSTLFKGIKSENQR 487

Query: 630 IDVIE-FIIEQMHQNK--VQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
            D+ + F++    QN     PD    + +    +NC   + A+E  + L
Sbjct: 488 QDLEKAFVLYNQLQNSNDFTPDEILFNVLLDACINCKQLDRAVELFKQL 536



 Score = 45.1 bits (105), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 61/330 (18%), Positives = 137/330 (41%), Gaps = 17/330 (5%)

Query: 70   RASHLLLNLGHAHHSLGADDFFH--ILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLL 127
            +A  LL  +  ++  +  D+  +  +++ C R  D    +  ++ M+   I  ++  Y +
Sbjct: 682  KAFALLEQMKQSNGGVKPDEILYNCLIDACVRFHDVNRAVAVFQEMQFSNIKPSSVTYGI 741

Query: 128  MMQALCKGGYLEEASNLIYFLGERYGIYPILP---VYNSFLGACAKLHSMVHANLCLDLM 184
            +++A      L+ A    +F+ ++     ++P    Y   + AC K + +  A    + M
Sbjct: 742  LIKAYGSANQLDNA----FFVFKKMKDNCLIPNSVTYGCLIDACVKNNQIERAMEVFETM 797

Query: 185  DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWE-----DYIKHYSLSIFSLRKFVWSFTR 239
                V  N + +T L+K       L    E+++     D IK  +++  SL         
Sbjct: 798  KRDGVQLNTIIFTTLIKGFAKSFKLDQALEVYQIMKMDDKIKPNNVTFNSLIDCCIRCNS 857

Query: 240  LRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIP-IPLNALPVMKVLRWS--F 296
            ++     +E ++  ++      +  +   +G  R   +    I LN +    ++     +
Sbjct: 858  IKKAMEIFEEMKQPISHTKPDLITYSTMIKGFCREKNIQQALIMLNDMEKNNIMADEVLY 917

Query: 297  SDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQ 356
            + ++  C +     +A ++   M+ L ++PS+ TY   I+     R L   + VL+ M++
Sbjct: 918  NSLLDGCCKANEIEMALKVYKNMEILKIKPSNVTYSILIKIYGKQRNLPKALGVLEEMKK 977

Query: 357  NNLKPQDSTIATLSVECSKALELDLAEALL 386
            + ++P       L   C K+ +L  AE L 
Sbjct: 978  DGIRPGLIVYTCLLQTCIKSRQLKTAEQLF 1007


>gi|226229856|gb|ACO38966.1| hypothetical protein [Populus balsamifera]
 gi|226229858|gb|ACO38967.1| hypothetical protein [Populus balsamifera]
 gi|226229860|gb|ACO38968.1| hypothetical protein [Populus balsamifera]
 gi|226229862|gb|ACO38969.1| hypothetical protein [Populus balsamifera]
 gi|226229864|gb|ACO38970.1| hypothetical protein [Populus balsamifera]
 gi|226229866|gb|ACO38971.1| hypothetical protein [Populus balsamifera]
 gi|226229868|gb|ACO38972.1| hypothetical protein [Populus balsamifera]
 gi|226229870|gb|ACO38973.1| hypothetical protein [Populus balsamifera]
 gi|226229872|gb|ACO38974.1| hypothetical protein [Populus balsamifera]
 gi|226229874|gb|ACO38975.1| hypothetical protein [Populus balsamifera]
 gi|226229876|gb|ACO38976.1| hypothetical protein [Populus balsamifera]
 gi|226229878|gb|ACO38977.1| hypothetical protein [Populus balsamifera]
 gi|226229880|gb|ACO38978.1| hypothetical protein [Populus balsamifera]
 gi|226229882|gb|ACO38979.1| hypothetical protein [Populus balsamifera]
 gi|226229884|gb|ACO38980.1| hypothetical protein [Populus balsamifera]
 gi|226229888|gb|ACO38982.1| hypothetical protein [Populus balsamifera]
 gi|226229890|gb|ACO38983.1| hypothetical protein [Populus balsamifera]
 gi|226229892|gb|ACO38984.1| hypothetical protein [Populus balsamifera]
 gi|226229894|gb|ACO38985.1| hypothetical protein [Populus balsamifera]
 gi|226229896|gb|ACO38986.1| hypothetical protein [Populus balsamifera]
 gi|226229898|gb|ACO38987.1| hypothetical protein [Populus balsamifera]
 gi|226229900|gb|ACO38988.1| hypothetical protein [Populus balsamifera]
 gi|226229902|gb|ACO38989.1| hypothetical protein [Populus balsamifera]
 gi|226229904|gb|ACO38990.1| hypothetical protein [Populus balsamifera]
 gi|226229906|gb|ACO38991.1| hypothetical protein [Populus balsamifera]
 gi|226229908|gb|ACO38992.1| hypothetical protein [Populus balsamifera]
 gi|226229910|gb|ACO38993.1| hypothetical protein [Populus balsamifera]
 gi|226229912|gb|ACO38994.1| hypothetical protein [Populus balsamifera]
 gi|226229914|gb|ACO38995.1| hypothetical protein [Populus balsamifera]
 gi|226229916|gb|ACO38996.1| hypothetical protein [Populus balsamifera]
 gi|226229918|gb|ACO38997.1| hypothetical protein [Populus balsamifera]
 gi|226229920|gb|ACO38998.1| hypothetical protein [Populus balsamifera]
 gi|226229922|gb|ACO38999.1| hypothetical protein [Populus balsamifera]
 gi|226229924|gb|ACO39000.1| hypothetical protein [Populus balsamifera]
 gi|226229926|gb|ACO39001.1| hypothetical protein [Populus balsamifera]
 gi|226229928|gb|ACO39002.1| hypothetical protein [Populus balsamifera]
 gi|226229930|gb|ACO39003.1| hypothetical protein [Populus balsamifera]
 gi|226229932|gb|ACO39004.1| hypothetical protein [Populus balsamifera]
 gi|226229934|gb|ACO39005.1| hypothetical protein [Populus balsamifera]
 gi|226229936|gb|ACO39006.1| hypothetical protein [Populus balsamifera]
 gi|226229938|gb|ACO39007.1| hypothetical protein [Populus balsamifera]
 gi|226229940|gb|ACO39008.1| hypothetical protein [Populus balsamifera]
 gi|226229942|gb|ACO39009.1| hypothetical protein [Populus balsamifera]
 gi|226229944|gb|ACO39010.1| hypothetical protein [Populus balsamifera]
 gi|226229946|gb|ACO39011.1| hypothetical protein [Populus balsamifera]
 gi|226229948|gb|ACO39012.1| hypothetical protein [Populus balsamifera]
 gi|226229950|gb|ACO39013.1| hypothetical protein [Populus balsamifera]
 gi|226229952|gb|ACO39014.1| hypothetical protein [Populus balsamifera]
 gi|226229954|gb|ACO39015.1| hypothetical protein [Populus balsamifera]
 gi|226229956|gb|ACO39016.1| hypothetical protein [Populus balsamifera]
 gi|226229958|gb|ACO39017.1| hypothetical protein [Populus balsamifera]
 gi|226229960|gb|ACO39018.1| hypothetical protein [Populus balsamifera]
 gi|226229962|gb|ACO39019.1| hypothetical protein [Populus balsamifera]
 gi|226229964|gb|ACO39020.1| hypothetical protein [Populus balsamifera]
 gi|226229966|gb|ACO39021.1| hypothetical protein [Populus balsamifera]
 gi|226229968|gb|ACO39022.1| hypothetical protein [Populus balsamifera]
 gi|226229970|gb|ACO39023.1| hypothetical protein [Populus balsamifera]
 gi|226229972|gb|ACO39024.1| hypothetical protein [Populus balsamifera]
 gi|226229974|gb|ACO39025.1| hypothetical protein [Populus balsamifera]
 gi|226229976|gb|ACO39026.1| hypothetical protein [Populus balsamifera]
 gi|226229978|gb|ACO39027.1| hypothetical protein [Populus balsamifera]
 gi|226229980|gb|ACO39028.1| hypothetical protein [Populus balsamifera]
 gi|226229982|gb|ACO39029.1| hypothetical protein [Populus balsamifera]
 gi|226229984|gb|ACO39030.1| hypothetical protein [Populus balsamifera]
 gi|226229986|gb|ACO39031.1| hypothetical protein [Populus balsamifera]
 gi|226229988|gb|ACO39032.1| hypothetical protein [Populus balsamifera]
 gi|226229990|gb|ACO39033.1| hypothetical protein [Populus balsamifera]
 gi|226229992|gb|ACO39034.1| hypothetical protein [Populus balsamifera]
 gi|226229994|gb|ACO39035.1| hypothetical protein [Populus balsamifera]
 gi|226229996|gb|ACO39036.1| hypothetical protein [Populus balsamifera]
 gi|226229998|gb|ACO39037.1| hypothetical protein [Populus balsamifera]
 gi|226230000|gb|ACO39038.1| hypothetical protein [Populus balsamifera]
 gi|226230002|gb|ACO39039.1| hypothetical protein [Populus balsamifera]
 gi|226230004|gb|ACO39040.1| hypothetical protein [Populus balsamifera]
 gi|226230006|gb|ACO39041.1| hypothetical protein [Populus balsamifera]
 gi|226230008|gb|ACO39042.1| hypothetical protein [Populus balsamifera]
 gi|226230010|gb|ACO39043.1| hypothetical protein [Populus balsamifera]
 gi|226230012|gb|ACO39044.1| hypothetical protein [Populus balsamifera]
 gi|226230014|gb|ACO39045.1| hypothetical protein [Populus balsamifera]
 gi|226230016|gb|ACO39046.1| hypothetical protein [Populus balsamifera]
 gi|226230018|gb|ACO39047.1| hypothetical protein [Populus balsamifera]
 gi|226230020|gb|ACO39048.1| hypothetical protein [Populus balsamifera]
 gi|226230022|gb|ACO39049.1| hypothetical protein [Populus balsamifera]
 gi|226230024|gb|ACO39050.1| hypothetical protein [Populus balsamifera]
 gi|226230026|gb|ACO39051.1| hypothetical protein [Populus balsamifera]
 gi|226230028|gb|ACO39052.1| hypothetical protein [Populus balsamifera]
 gi|226230030|gb|ACO39053.1| hypothetical protein [Populus balsamifera]
 gi|226230032|gb|ACO39054.1| hypothetical protein [Populus balsamifera]
 gi|226230034|gb|ACO39055.1| hypothetical protein [Populus balsamifera]
 gi|226230036|gb|ACO39056.1| hypothetical protein [Populus balsamifera]
 gi|226230038|gb|ACO39057.1| hypothetical protein [Populus balsamifera]
          Length = 81

 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 52/81 (64%), Positives = 68/81 (83%), Gaps = 1/81 (1%)

Query: 380 DLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSL 438
           DLAE LLDQI+ C  P P+++FL ACD MD+PERA+++ AKM++ K++PDIRTY+ LFSL
Sbjct: 1   DLAEVLLDQITNCPYPYPYNSFLEACDAMDQPERAVRMLAKMKKLKIQPDIRTYQQLFSL 60

Query: 439 FGNVNAPYEEGNMFSQVDSAK 459
            GN NAPYE+G+M S+VDSAK
Sbjct: 61  VGNTNAPYEDGDMLSRVDSAK 81


>gi|226229886|gb|ACO38981.1| hypothetical protein [Populus balsamifera]
          Length = 81

 Score =  117 bits (293), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 52/81 (64%), Positives = 68/81 (83%), Gaps = 1/81 (1%)

Query: 380 DLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSL 438
           DLAE LLDQI+ C  P P+++FL ACD MD+PERA+++ AKM++ K++PDIRTY+ LFSL
Sbjct: 1   DLAEVLLDQITNCPYPYPYNSFLEACDAMDQPERAVQMLAKMKKLKIQPDIRTYQQLFSL 60

Query: 439 FGNVNAPYEEGNMFSQVDSAK 459
            GN NAPYE+G+M S+VDSAK
Sbjct: 61  VGNTNAPYEDGDMLSRVDSAK 81


>gi|380875521|gb|AFF27500.1| PPR domain-containing protein [Oryza sativa Indica Group]
          Length = 742

 Score =  115 bits (289), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 85/339 (25%), Positives = 159/339 (46%), Gaps = 16/339 (4%)

Query: 323 GLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVEC-SKALELDL 381
           G +P   TY+ F+  +  +  + + ++V+ +M Q    P D     + V C  K  +L+ 
Sbjct: 281 GFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDP-DVFTYNIVVNCLCKNGQLEE 339

Query: 382 AEALLDQ-ISRCTNPK--PFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFS 437
           A+ +L+Q + R   P    F+  +AA  T ++ E A+ +  ++  K + PD+ T+ +L +
Sbjct: 340 AKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILIN 399

Query: 438 LFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELI 497
               V  P+    +F ++   K       ++  N +  +  S+  L KAL       +L+
Sbjct: 400 ALCKVGDPHLALRLFEEM---KNSGCTPDEVTYNTLIDNLCSLGKLGKAL-------DLL 449

Query: 498 QYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSII 557
           +    +  P  T TYNT++  L +      A E+F QM   GI  NA T+N +ID     
Sbjct: 450 KDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKD 509

Query: 558 RCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLY 617
           +    A  L++ M+ +G  P  +TY +++      GD  +A ++L+ ++  G   DV+ Y
Sbjct: 510 KKIDDAFGLINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTY 569

Query: 618 NTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVF 656
            T++   C+ GR  V   ++  M    ++P P   + V 
Sbjct: 570 GTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVL 608



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 90/390 (23%), Positives = 166/390 (42%), Gaps = 22/390 (5%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +F+ ++ A  R      A  ++ +M S G+ P   T+   ++  V +  +   + V   M
Sbjct: 183 TFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARM 242

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPK--PFSAFLAACDTMDKP 411
            +        T+  L     K   ++ A   + Q I+    P    ++ F+      D  
Sbjct: 243 LEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHV 302

Query: 412 ERAIKIFAKMRQKLR-PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
             A+K+   M Q+   PD+ TY ++      VN   + G    Q++ AK    I   M  
Sbjct: 303 GHALKVMDVMVQEGHDPDVFTYNIV------VNCLCKNG----QLEEAK---GILNQMVD 349

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHR 527
                   +   L+ AL     + E +           +P   T+N ++++L +  + H 
Sbjct: 350 RGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHL 409

Query: 528 AMEIFKQMKTCGIPPNAATYNIMID-CCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
           A+ +F++MK  G  P+  TYN +ID  CS+ +  K A  L+  M   G    T+TY  +I
Sbjct: 410 ALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGK-ALDLLKDMESTGCPRSTITYNTII 468

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
             L      +EA  + D + L+GI  + + +NT++   C+  +ID    +I QM    +Q
Sbjct: 469 DGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFGLINQMISEGLQ 528

Query: 647 PDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
           P+  T + + + Y   G    A + L+ ++
Sbjct: 529 PNNITYNSILTHYCKQGDIKKAADILETMT 558



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/241 (19%), Positives = 102/241 (42%), Gaps = 3/241 (1%)

Query: 450 NMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGT 509
           N+  +    K + ++  +M    I+   ++   L+KAL     +R  +    +  +    
Sbjct: 154 NVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVA 213

Query: 510 P---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASAL 566
           P   T+ T++   VE      A+ +  +M   G      T N++I+    +   + A   
Sbjct: 214 PDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGY 273

Query: 567 VSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE 626
           +   + DGF P  +TY   +  L        AL ++D++  EG   DV  YN ++   C+
Sbjct: 274 IQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCK 333

Query: 627 KGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
            G+++  + I+ QM      PD +T + + +          A++  + ++++ +  +V T
Sbjct: 334 NGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYT 393

Query: 687 L 687
            
Sbjct: 394 F 394



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 57/282 (20%), Positives = 110/282 (39%), Gaps = 20/282 (7%)

Query: 401 FLAACDTMDKPERAIKIF--AKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSA 458
            L A      P+ A+++   A  R    P    YE +    G V A          +D  
Sbjct: 44  LLTALREQPDPDAALRMLNAALARDDFAPGPEVYEEIIRKLGAVGA----------LDLM 93

Query: 459 KRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPL-----GTPTYN 513
           K + A   +M R   Q     + + L +   + +  + +    +   PL      T  YN
Sbjct: 94  KVLVA---EMRREGHQVKLGVVHSFLDSYEGQQLFDDAVDLILNQLQPLFGIQADTVVYN 150

Query: 514 TVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRD 573
            +L+ LVE  +      ++ +M   GI P+  T+N ++         ++A  ++  M   
Sbjct: 151 HLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSR 210

Query: 574 GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVI 633
           G  P   T+T L++  ++ G  + AL +   +   G     +  N ++   C+ GR++  
Sbjct: 211 GVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDA 270

Query: 634 EFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
              I+Q   +  +PD  T +   +G         A++ + V+
Sbjct: 271 LGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVM 312



 Score = 39.3 bits (90), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 63/324 (19%), Positives = 122/324 (37%), Gaps = 18/324 (5%)

Query: 59  IVDALCRGER-SRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKE 117
           ++ ALC G R   A  L   +     S     F  ++N   +  DP   +  +  M+   
Sbjct: 362 LIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSG 421

Query: 118 IGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHA 177
              +   Y  ++  LC  G L +A +L+  + E  G       YN+ +    K   +  A
Sbjct: 422 CTPDEVTYNTLIDNLCSLGKLGKALDLLKDM-ESTGCPRSTITYNTIIDGLCKKMRIEEA 480

Query: 178 NLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYSLSIFSLRKFVWS 236
               D MD + + +N +T+  L+      K +     +    I +    +  +    +  
Sbjct: 481 EEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFGLINQMISEGLQPNNITYNSILTH 540

Query: 237 FTRLRDLKSAYETLQHMVALAMMGKLYINRT-SEGRLRSSRLDIPIPLNALPVMKVLRW- 294
           + +  D+K A + L+ M A      +    T   G  ++ R  +     AL V++ +R  
Sbjct: 541 YCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQV-----ALKVLRGMRIK 595

Query: 295 -------SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRG-LRN 346
                  +++ V+ +  R  N   A  L  +M  +G  P + TY    R +    G ++ 
Sbjct: 596 GMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKE 655

Query: 347 GMEVLKIMQQNNLKPQDSTIATLS 370
             + +  M      P+ S+   L+
Sbjct: 656 AFDFMLEMVDKGFIPEFSSFRMLA 679


>gi|125587025|gb|EAZ27689.1| hypothetical protein OsJ_11637 [Oryza sativa Japonica Group]
          Length = 650

 Score =  115 bits (288), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 84/332 (25%), Positives = 157/332 (47%), Gaps = 16/332 (4%)

Query: 323 GLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVEC-SKALELDL 381
           G +P   TY+ F+  +  +  + + ++V+ +M Q    P D     + V C  K  +L+ 
Sbjct: 189 GFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDP-DVFTYNIVVNCLCKNGQLEE 247

Query: 382 AEALLDQ-ISRCTNPK--PFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFS 437
           A+ +L+Q + R   P    F+  +AA  T ++ E A+ +  ++  K + PD+ T+ +L +
Sbjct: 248 AKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILIN 307

Query: 438 LFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELI 497
               V  P+    +F ++   K       ++  N +  +  S+  L KAL       +L+
Sbjct: 308 ALCKVGDPHLALRLFEEM---KNSGCTPDEVTYNTLIDNLCSLGKLGKAL-------DLL 357

Query: 498 QYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSII 557
           +    +  P  T TYNT++  L +      A E+F QM   GI  NA T+N +ID     
Sbjct: 358 KDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKD 417

Query: 558 RCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLY 617
           +    A  L++ M+ +G  P  +TY +++      GD  +A ++L+ ++  G   DV+ Y
Sbjct: 418 KKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTY 477

Query: 618 NTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649
            T++   C+ GR  V   ++  M    ++P P
Sbjct: 478 GTLINGLCKAGRTQVALKVLRGMRIKGMRPTP 509



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 90/390 (23%), Positives = 166/390 (42%), Gaps = 22/390 (5%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +F+ ++ A  R      A  ++ +M S G+ P   T+   ++  V +  +   + V   M
Sbjct: 91  TFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARM 150

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPK--PFSAFLAACDTMDKP 411
            +        T+  L     K   ++ A   + Q I+    P    ++ F+      D  
Sbjct: 151 LEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHV 210

Query: 412 ERAIKIFAKMRQKLR-PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
             A+K+   M Q+   PD+ TY ++      VN   + G    Q++ AK    I   M  
Sbjct: 211 GHALKVMDVMVQEGHDPDVFTYNIV------VNCLCKNG----QLEEAK---GILNQMVD 257

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHR 527
                   +   L+ AL     + E +           +P   T+N ++++L +  + H 
Sbjct: 258 RGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHL 317

Query: 528 AMEIFKQMKTCGIPPNAATYNIMID-CCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
           A+ +F++MK  G  P+  TYN +ID  CS+ +  K A  L+  M   G    T+TY  +I
Sbjct: 318 ALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGK-ALDLLKDMESTGCPRSTITYNTII 376

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
             L      +EA  + D + L+GI  + + +NT++   C+  +ID    +I QM    +Q
Sbjct: 377 DGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQ 436

Query: 647 PDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
           P+  T + + + Y   G    A + L+ ++
Sbjct: 437 PNNITYNSILTHYCKQGDIKKAADILETMT 466



 Score = 66.6 bits (161), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/241 (19%), Positives = 102/241 (42%), Gaps = 3/241 (1%)

Query: 450 NMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGT 509
           N+  +    K + ++  +M    I+   ++   L+KAL     +R  +    +  +    
Sbjct: 62  NVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVA 121

Query: 510 P---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASAL 566
           P   T+ T++   VE      A+ +  +M   G      T N++I+    +   + A   
Sbjct: 122 PDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGY 181

Query: 567 VSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE 626
           +   + DGF P  +TY   +  L        AL ++D++  EG   DV  YN ++   C+
Sbjct: 182 IQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCK 241

Query: 627 KGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
            G+++  + I+ QM      PD +T + + +          A++  + ++++ +  +V T
Sbjct: 242 NGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYT 301

Query: 687 L 687
            
Sbjct: 302 F 302



 Score = 52.8 bits (125), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 36/167 (21%), Positives = 73/167 (43%)

Query: 509 TPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVS 568
           T  YN +L+ LVE  +      ++ +M   GI P+  T+N ++         ++A  ++ 
Sbjct: 54  TVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLE 113

Query: 569 MMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
            M   G  P   T+T L++  ++ G  + AL +   +   G     +  N ++   C+ G
Sbjct: 114 EMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLG 173

Query: 629 RIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
           R++     I+Q   +  +PD  T +   +G         A++ + V+
Sbjct: 174 RVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVM 220



 Score = 43.1 bits (100), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 4/107 (3%)

Query: 574 GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVI 633
           G    T+ Y  L+ +L++        ++   +   GI  DV+ +NT++K  C   ++   
Sbjct: 49  GIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTA 108

Query: 634 EFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRML 680
             ++E+M    V PD +T   +  G+V  G    ++EA   +  RML
Sbjct: 109 VLMLEEMSSRGVAPDETTFTTLMQGFVEEG----SIEAALRVKARML 151



 Score = 42.4 bits (98), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 64/324 (19%), Positives = 122/324 (37%), Gaps = 18/324 (5%)

Query: 59  IVDALCRGER-SRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKE 117
           ++ ALC G R   A  L   +     S     F  ++N   +  DP   +  +  M+   
Sbjct: 270 LIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSG 329

Query: 118 IGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHA 177
              +   Y  ++  LC  G L +A +L+  + E  G       YN+ +    K   +  A
Sbjct: 330 CTPDEVTYNTLIDNLCSLGKLGKALDLLKDM-ESTGCPRSTITYNTIIDGLCKKMRIEEA 388

Query: 178 NLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH-YSLSIFSLRKFVWS 236
               D MD + + +N +T+  L+      K +    E+    I      +  +    +  
Sbjct: 389 EEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTH 448

Query: 237 FTRLRDLKSAYETLQHMVALAMMGKLYINRT-SEGRLRSSRLDIPIPLNALPVMKVLRW- 294
           + +  D+K A + L+ M A      +    T   G  ++ R  +     AL V++ +R  
Sbjct: 449 YCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQV-----ALKVLRGMRIK 503

Query: 295 -------SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRG-LRN 346
                  +++ V+ +  R  N   A  L  +M  +G  P + TY    R +    G ++ 
Sbjct: 504 GMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKE 563

Query: 347 GMEVLKIMQQNNLKPQDSTIATLS 370
             + +  M      P+ S+   L+
Sbjct: 564 AFDFMLEMVDKGFIPEFSSFRMLA 587



 Score = 40.4 bits (93), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 35/165 (21%), Positives = 71/165 (43%), Gaps = 6/165 (3%)

Query: 515 VLHSLVEAQESHRAME-----IFKQMKTC-GIPPNAATYNIMIDCCSIIRCFKSASALVS 568
           V+HS +++ E  +  +     I  Q++   GI  +   YN +++        K   ++ S
Sbjct: 19  VVHSFLDSYEGQQLFDDAVDLILNQLQPLFGIQADTVVYNHLLNVLVEGSKMKLLESVYS 78

Query: 569 MMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
            M   G  P  +T+  L+K L        A+ +L+ +S  G+  D   + T+++   E+G
Sbjct: 79  EMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEG 138

Query: 629 RIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
            I+    +  +M +        T + + +GY   G    A+  +Q
Sbjct: 139 SIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQ 183


>gi|125544747|gb|EAY90886.1| hypothetical protein OsI_12495 [Oryza sativa Indica Group]
          Length = 742

 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/332 (25%), Positives = 157/332 (47%), Gaps = 16/332 (4%)

Query: 323 GLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVEC-SKALELDL 381
           G +P   TY+ F+  +  +  + + ++V+ +M Q    P D     + V C  K  +L+ 
Sbjct: 281 GFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDP-DVFTYNIVVNCLCKNGQLEE 339

Query: 382 AEALLDQ-ISRCTNPK--PFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFS 437
           A+ +L+Q + R   P    F+  +AA  T ++ E A+ +  ++  K + PD+ T+ +L +
Sbjct: 340 AKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILIN 399

Query: 438 LFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELI 497
               V  P+    +F ++   K       ++  N +  +  S+  L KAL       +L+
Sbjct: 400 ALCKVGDPHLALRLFEEM---KNSGCTPDEVTYNTLIDNLCSLGKLGKAL-------DLL 449

Query: 498 QYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSII 557
           +    +  P  T TYNT++  L +      A E+F QM   GI  NA T+N +ID     
Sbjct: 450 KDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKD 509

Query: 558 RCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLY 617
           +    A  L++ M+ +G  P  +TY +++      GD  +A ++L+ ++  G   DV+ Y
Sbjct: 510 KKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTY 569

Query: 618 NTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649
            T++   C+ GR  V   ++  M    ++P P
Sbjct: 570 GTLINGLCKAGRTQVALKVLRGMRIKGMRPTP 601



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 90/390 (23%), Positives = 166/390 (42%), Gaps = 22/390 (5%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +F+ ++ A  R      A  ++ +M S G+ P   T+   ++  V +  +   + V   M
Sbjct: 183 TFNTLMKALCRAHQVRTAVIMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARM 242

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPK--PFSAFLAACDTMDKP 411
            +        T+  L     K   ++ A   + Q I+    P    ++ F+      D  
Sbjct: 243 LEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHV 302

Query: 412 ERAIKIFAKMRQKLR-PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
             A+K+   M Q+   PD+ TY ++      VN   + G    Q++ AK    I   M  
Sbjct: 303 GHALKVMDVMVQEGHDPDVFTYNIV------VNCLCKNG----QLEEAK---GILNQMVD 349

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHR 527
                   +   L+ AL     + E +           +P   T+N ++++L +  + H 
Sbjct: 350 RGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHL 409

Query: 528 AMEIFKQMKTCGIPPNAATYNIMID-CCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
           A+ +F++MK  G  P+  TYN +ID  CS+ +  K A  L+  M   G    T+TY  +I
Sbjct: 410 ALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGK-ALDLLKDMESTGCPRSTITYNTII 468

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
             L      +EA  + D + L+GI  + + +NT++   C+  +ID    +I QM    +Q
Sbjct: 469 DGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQ 528

Query: 647 PDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
           P+  T + + + Y   G    A + L+ ++
Sbjct: 529 PNNITYNSILTHYCKQGDIKKAADILETMT 558



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/241 (19%), Positives = 102/241 (42%), Gaps = 3/241 (1%)

Query: 450 NMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGT 509
           N+  +    K + ++  +M    I+   ++   L+KAL     +R  +    +  +    
Sbjct: 154 NVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVIMLEEMSSRGVA 213

Query: 510 P---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASAL 566
           P   T+ T++   VE      A+ +  +M   G      T N++I+    +   + A   
Sbjct: 214 PDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGY 273

Query: 567 VSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE 626
           +   + DGF P  +TY   +  L        AL ++D++  EG   DV  YN ++   C+
Sbjct: 274 IQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCK 333

Query: 627 KGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
            G+++  + I+ QM      PD +T + + +          A++  + ++++ +  +V T
Sbjct: 334 NGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYT 393

Query: 687 L 687
            
Sbjct: 394 F 394



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 57/282 (20%), Positives = 110/282 (39%), Gaps = 20/282 (7%)

Query: 401 FLAACDTMDKPERAIKIF--AKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSA 458
            L A      P+ A+++   A  R    P    YE +    G V A          +D  
Sbjct: 44  LLTALREQPDPDAALRMLNAALARDDFAPGPEVYEEIIRKLGAVGA----------LDLM 93

Query: 459 KRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPL-----GTPTYN 513
           K + A   +M R   Q     + + L +   + +  + +    +   PL      T  YN
Sbjct: 94  KVLVA---EMRREGHQVKLGVVHSFLDSYEGQQLFDDAVDLILNQLQPLFGIQADTVVYN 150

Query: 514 TVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRD 573
            +L+ LVE  +      ++ +M   GI P+  T+N ++         ++A  ++  M   
Sbjct: 151 HLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVIMLEEMSSR 210

Query: 574 GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVI 633
           G  P   T+T L++  ++ G  + AL +   +   G     +  N ++   C+ GR++  
Sbjct: 211 GVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDA 270

Query: 634 EFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
              I+Q   +  +PD  T +   +G         A++ + V+
Sbjct: 271 LGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVM 312



 Score = 42.0 bits (97), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 64/324 (19%), Positives = 122/324 (37%), Gaps = 18/324 (5%)

Query: 59  IVDALCRGER-SRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKE 117
           ++ ALC G R   A  L   +     S     F  ++N   +  DP   +  +  M+   
Sbjct: 362 LIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSG 421

Query: 118 IGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHA 177
              +   Y  ++  LC  G L +A +L+  + E  G       YN+ +    K   +  A
Sbjct: 422 CTPDEVTYNTLIDNLCSLGKLGKALDLLKDM-ESTGCPRSTITYNTIIDGLCKKMRIEEA 480

Query: 178 NLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH-YSLSIFSLRKFVWS 236
               D MD + + +N +T+  L+      K +    E+    I      +  +    +  
Sbjct: 481 EEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTH 540

Query: 237 FTRLRDLKSAYETLQHMVALAMMGKLYINRT-SEGRLRSSRLDIPIPLNALPVMKVLRW- 294
           + +  D+K A + L+ M A      +    T   G  ++ R  +     AL V++ +R  
Sbjct: 541 YCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQV-----ALKVLRGMRIK 595

Query: 295 -------SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRG-LRN 346
                  +++ V+ +  R  N   A  L  +M  +G  P + TY    R +    G ++ 
Sbjct: 596 GMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKE 655

Query: 347 GMEVLKIMQQNNLKPQDSTIATLS 370
             + +  M      P+ S+   L+
Sbjct: 656 AFDFMLEMVDKGFIPEFSSFRMLA 679


>gi|115454009|ref|NP_001050605.1| Os03g0597200 [Oryza sativa Japonica Group]
 gi|28875991|gb|AAO60000.1| putative pentatricopeptide repeat protein [Oryza sativa Japonica
           Group]
 gi|108709658|gb|ABF97453.1| DEAD/DEAH box helicase family protein, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113549076|dbj|BAF12519.1| Os03g0597200 [Oryza sativa Japonica Group]
          Length = 742

 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/332 (25%), Positives = 157/332 (47%), Gaps = 16/332 (4%)

Query: 323 GLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVEC-SKALELDL 381
           G +P   TY+ F+  +  +  + + ++V+ +M Q    P D     + V C  K  +L+ 
Sbjct: 281 GFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDP-DVFTYNIVVNCLCKNGQLEE 339

Query: 382 AEALLDQ-ISRCTNPK--PFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFS 437
           A+ +L+Q + R   P    F+  +AA  T ++ E A+ +  ++  K + PD+ T+ +L +
Sbjct: 340 AKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILIN 399

Query: 438 LFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELI 497
               V  P+    +F ++   K       ++  N +  +  S+  L KAL       +L+
Sbjct: 400 ALCKVGDPHLALRLFEEM---KNSGCTPDEVTYNTLIDNLCSLGKLGKAL-------DLL 449

Query: 498 QYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSII 557
           +    +  P  T TYNT++  L +      A E+F QM   GI  NA T+N +ID     
Sbjct: 450 KDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKD 509

Query: 558 RCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLY 617
           +    A  L++ M+ +G  P  +TY +++      GD  +A ++L+ ++  G   DV+ Y
Sbjct: 510 KKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTY 569

Query: 618 NTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649
            T++   C+ GR  V   ++  M    ++P P
Sbjct: 570 GTLINGLCKAGRTQVALKVLRGMRIKGMRPTP 601



 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 90/390 (23%), Positives = 166/390 (42%), Gaps = 22/390 (5%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +F+ ++ A  R      A  ++ +M S G+ P   T+   ++  V +  +   + V   M
Sbjct: 183 TFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARM 242

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPK--PFSAFLAACDTMDKP 411
            +        T+  L     K   ++ A   + Q I+    P    ++ F+      D  
Sbjct: 243 LEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHV 302

Query: 412 ERAIKIFAKMRQKLR-PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
             A+K+   M Q+   PD+ TY ++      VN   + G    Q++ AK    I   M  
Sbjct: 303 GHALKVMDVMVQEGHDPDVFTYNIV------VNCLCKNG----QLEEAK---GILNQMVD 349

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHR 527
                   +   L+ AL     + E +           +P   T+N ++++L +  + H 
Sbjct: 350 RGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHL 409

Query: 528 AMEIFKQMKTCGIPPNAATYNIMID-CCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
           A+ +F++MK  G  P+  TYN +ID  CS+ +  K A  L+  M   G    T+TY  +I
Sbjct: 410 ALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGK-ALDLLKDMESTGCPRSTITYNTII 468

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
             L      +EA  + D + L+GI  + + +NT++   C+  +ID    +I QM    +Q
Sbjct: 469 DGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQ 528

Query: 647 PDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
           P+  T + + + Y   G    A + L+ ++
Sbjct: 529 PNNITYNSILTHYCKQGDIKKAADILETMT 558



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/241 (19%), Positives = 102/241 (42%), Gaps = 3/241 (1%)

Query: 450 NMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGT 509
           N+  +    K + ++  +M    I+   ++   L+KAL     +R  +    +  +    
Sbjct: 154 NVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVA 213

Query: 510 P---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASAL 566
           P   T+ T++   VE      A+ +  +M   G      T N++I+    +   + A   
Sbjct: 214 PDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGY 273

Query: 567 VSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE 626
           +   + DGF P  +TY   +  L        AL ++D++  EG   DV  YN ++   C+
Sbjct: 274 IQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCK 333

Query: 627 KGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
            G+++  + I+ QM      PD +T + + +          A++  + ++++ +  +V T
Sbjct: 334 NGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYT 393

Query: 687 L 687
            
Sbjct: 394 F 394



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 57/282 (20%), Positives = 110/282 (39%), Gaps = 20/282 (7%)

Query: 401 FLAACDTMDKPERAIKIF--AKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSA 458
            L A      P+ A+++   A  R    P    YE +    G V A          +D  
Sbjct: 44  LLTALREQPDPDAALRMLNAALARDDFAPGPEVYEEIIRKLGAVGA----------LDLM 93

Query: 459 KRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPL-----GTPTYN 513
           K + A   +M R   Q     + + L +   + +  + +    +   PL      T  YN
Sbjct: 94  KVLVA---EMRREGHQVKLGVVHSFLDSYEGQQLFDDAVDLILNQLQPLFGIQADTVVYN 150

Query: 514 TVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRD 573
            +L+ LVE  +      ++ +M   GI P+  T+N ++         ++A  ++  M   
Sbjct: 151 HLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSR 210

Query: 574 GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVI 633
           G  P   T+T L++  ++ G  + AL +   +   G     +  N ++   C+ GR++  
Sbjct: 211 GVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDA 270

Query: 634 EFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
              I+Q   +  +PD  T +   +G         A++ + V+
Sbjct: 271 LGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVM 312



 Score = 42.0 bits (97), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 64/324 (19%), Positives = 122/324 (37%), Gaps = 18/324 (5%)

Query: 59  IVDALCRGER-SRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKE 117
           ++ ALC G R   A  L   +     S     F  ++N   +  DP   +  +  M+   
Sbjct: 362 LIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSG 421

Query: 118 IGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHA 177
              +   Y  ++  LC  G L +A +L+  + E  G       YN+ +    K   +  A
Sbjct: 422 CTPDEVTYNTLIDNLCSLGKLGKALDLLKDM-ESTGCPRSTITYNTIIDGLCKKMRIEEA 480

Query: 178 NLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH-YSLSIFSLRKFVWS 236
               D MD + + +N +T+  L+      K +    E+    I      +  +    +  
Sbjct: 481 EEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTH 540

Query: 237 FTRLRDLKSAYETLQHMVALAMMGKLYINRT-SEGRLRSSRLDIPIPLNALPVMKVLRW- 294
           + +  D+K A + L+ M A      +    T   G  ++ R  +     AL V++ +R  
Sbjct: 541 YCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQV-----ALKVLRGMRIK 595

Query: 295 -------SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRG-LRN 346
                  +++ V+ +  R  N   A  L  +M  +G  P + TY    R +    G ++ 
Sbjct: 596 GMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKE 655

Query: 347 GMEVLKIMQQNNLKPQDSTIATLS 370
             + +  M      P+ S+   L+
Sbjct: 656 AFDFMLEMVDKGFIPEFSSFRMLA 679


>gi|225434273|ref|XP_002276453.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560
           [Vitis vinifera]
 gi|296084392|emb|CBI24780.3| unnamed protein product [Vitis vinifera]
          Length = 890

 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 86/372 (23%), Positives = 163/372 (43%), Gaps = 20/372 (5%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           ++F+ +++   +  N   AE    ++   GL P + TY   I     ++G+ N  EV  I
Sbjct: 195 YTFNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLI 254

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDK 410
           M Q   +  + +   L     +A  ++ A  L   ++    C   + ++  + A     +
Sbjct: 255 MPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGR 314

Query: 411 PERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
              A+ +F +M++K   P++ TY +L       N   E   M S+             M+
Sbjct: 315 KVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSE-------------MS 361

Query: 470 RNNIQHSHISMKNLLKALGAEGMIR---ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESH 526
              +  S ++   L+     EGMI    E++     +     T TYN ++  L + ++ H
Sbjct: 362 EKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVH 421

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
           +AM +  +M    + P+  TYN +I     +   +SA  L+S+M  +G  P   TY+  I
Sbjct: 422 KAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFI 481

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
             L   G  +EA  L D V  +G+  + ++Y  ++   C+ G+IDV   ++E+M  +   
Sbjct: 482 DTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACL 541

Query: 647 PDPSTCHFVFSG 658
           P+  T + +  G
Sbjct: 542 PNSYTYNVLIEG 553



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 124/573 (21%), Positives = 244/573 (42%), Gaps = 38/573 (6%)

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
           M+EK    N   Y +++  LCK   ++EA  ++  + E+ G+ P +  YN+ +    K  
Sbjct: 325 MKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEK-GLIPSVVTYNALIDGYCKEG 383

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELL----KLAVWQKNLSAVHEIWEDYIKHYSLSIF 228
            +  A   LDLM+S   G N  TY EL+    K     K ++ ++++ E   +  S S+ 
Sbjct: 384 MIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLE---RKLSPSLI 440

Query: 229 SLRKFVWSFTRLRDLKSAYETLQHMVALAMMG-----KLYINR-TSEGRLR-SSRLDIPI 281
           +    +    ++ DL+SAY  L  M    ++       ++I+    EGR+  +  L   +
Sbjct: 441 TYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSV 500

Query: 282 PLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSD 341
               +   +V+  +  D     G+     +A  L+ +M +    P+S+TY+  I  +  +
Sbjct: 501 KAKGVKANEVIYTALIDGYCKVGKID---VAYSLLERMLNDACLPNSYTYNVLIEGLCKE 557

Query: 342 RGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPK--PF 398
           + ++    ++  M    +KP   T   L  E  K    D A  + +  +S    P    +
Sbjct: 558 KKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTY 617

Query: 399 SAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFS-QVD 456
           +AFL A  +    E    + AKM ++ + PD+ TY +L   +  +   +   +     VD
Sbjct: 618 TAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVD 677

Query: 457 SAKRINAIEMDMARNNIQH--------SHI---SMKNLLKALGAEGMIRELIQYFCDSKT 505
           +  + +   + +   N+ H        S I   S+ N L+   A  +  +++++ C    
Sbjct: 678 TGCKPSLYIVSILIKNLSHENRMKETRSEIGIDSVSNTLEYEIALKLFEKMVEHGC---- 733

Query: 506 PLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASA 565
            +    Y  ++    + +    A  +   MK  G+ P+   YN ++DCC  +  +  A  
Sbjct: 734 TIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLLDCCCKLGVYAEAVR 793

Query: 566 LVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKAC 625
           LV  MV +G  P   +Y  L+  L   G  ++A  +   +   G  +D + +  ++    
Sbjct: 794 LVDAMVENGLLPLLESYKLLVCGLYIEGSNEKAKAVFHGLLSCGYNYDEVAWKVLIDGLL 853

Query: 626 EKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
           ++  +D    +I+ M +   QP+P T   +  G
Sbjct: 854 KRDLVDECSELIDIMEEKGCQPNPLTYSLLIEG 886



 Score =  102 bits (254), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 134/597 (22%), Positives = 242/597 (40%), Gaps = 70/597 (11%)

Query: 97  CARSPDPLFVMETWRMME---EKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYG 153
           C    D LFV+E +R M    E +     +CY  ++ +L K   ++E    +Y       
Sbjct: 131 CCSIEDVLFVLEVFRKMNADGEFKFKPTLRCYNTILMSLSKFLLIDEMKT-VYLELLNNQ 189

Query: 154 IYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVH 213
           I P +  +N+ +    K+ ++V A L    +    +  +  TYT L+      K +   +
Sbjct: 190 ISPNIYTFNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAY 249

Query: 214 EIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMG------KLYINRT 267
           E++                 +      +  + +Y  L H   L   G      KL+ + T
Sbjct: 250 EVF----------------LIMPQKGCQRNEVSYTNLIH--GLCEAGRINEALKLFADMT 291

Query: 268 SEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPS 327
            +              N  P ++    +++ +I+A   +     A  L  +M+  G +P+
Sbjct: 292 ED--------------NCCPTVR----TYTVLIYALSGSGRKVEALNLFNEMKEKGCEPN 333

Query: 328 SHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLD 387
            HTY   I  +  +  +    ++L  M +  L P   T   L     K   +D A  +LD
Sbjct: 334 VHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILD 393

Query: 388 --QISRC-TNPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVN 443
             + + C  N + ++  +       K  +A+ +  KM  +KL P + TY  L      VN
Sbjct: 394 LMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVN 453

Query: 444 APYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDS 503
                      ++SA R+ ++   M  N +     +    +  L  EG + E    F DS
Sbjct: 454 ----------DLESAYRLLSL---MNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLF-DS 499

Query: 504 KTPLGTPTYNTVLHSLVEA----QESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRC 559
               G      +  +L++      +   A  + ++M      PN+ TYN++I+     + 
Sbjct: 500 VKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKK 559

Query: 560 FKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLD-LVSLEGIPHDVLLYN 618
            K AS+LV+ M+  G  P  +TYT LI  +L  G FD AL + + +VSL G   DV  Y 
Sbjct: 560 MKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSL-GYQPDVCTYT 618

Query: 619 TILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
             L     +G ++ ++ +I +M++  + PD  T   +  GY   G  + A + L+ +
Sbjct: 619 AFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCM 675



 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 91/376 (24%), Positives = 155/376 (41%), Gaps = 42/376 (11%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           S+S +++   R +  G+AE++ + M               I++  S   +   +EV + M
Sbjct: 103 SYSSMLNILIRARLLGVAEKIRISM---------------IKSCCSIEDVLFVLEVFRKM 147

Query: 355 QQNN---LKPQDSTIATLSVECSKALELD-----LAEALLDQISRCTNPKPFSAFLAA-C 405
             +     KP      T+ +  SK L +D       E L +QIS   N   F+A +   C
Sbjct: 148 NADGEFKFKPTLRCYNTILMSLSKFLLIDEMKTVYLELLNNQIS--PNIYTFNAMVNGYC 205

Query: 406 DTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIE 465
              +  E  +     ++  L PD  TY  L  + G+             VD+A  +  I 
Sbjct: 206 KIGNVVEAELYASKIVQAGLHPDTFTYTSL--ILGHCRN--------KGVDNAYEVFLI- 254

Query: 466 MDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPT---YNTVLHSLVEA 522
             M +   Q + +S  NL+  L   G I E ++ F D       PT   Y  ++++L  +
Sbjct: 255 --MPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGS 312

Query: 523 QESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTY 582
                A+ +F +MK  G  PN  TY ++ID          A  ++S M   G  P  +TY
Sbjct: 313 GRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTY 372

Query: 583 TALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642
            ALI      G  D+A  +LDL+       +   YN ++   C+K ++     ++ +M +
Sbjct: 373 NALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLE 432

Query: 643 NKVQPDPSTCHFVFSG 658
            K+ P   T + +  G
Sbjct: 433 RKLSPSLITYNSLIHG 448



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 63/285 (22%), Positives = 116/285 (40%), Gaps = 24/285 (8%)

Query: 400 AFLAACDTMDKPERAIKIFAKMRQ----KLRPDIRTYE-LLFSLFGNVNAPYEEGNMFSQ 454
           + + +C +++     +++F KM      K +P +R Y  +L SL           + F  
Sbjct: 126 SMIKSCCSIEDVLFVLEVFRKMNADGEFKFKPTLRCYNTILMSL-----------SKFLL 174

Query: 455 VDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQY---FCDSKTPLGTPT 511
           +D  K    + +++  N I  +  +   ++      G + E   Y      +     T T
Sbjct: 175 IDEMK---TVYLELLNNQISPNIYTFNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFT 231

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATY-NIMIDCCSIIRCFKSASALVSMM 570
           Y +++      +    A E+F  M   G   N  +Y N++   C   R    A  L + M
Sbjct: 232 YTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGR-INEALKLFADM 290

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
             D   P   TYT LI  L   G   EALNL + +  +G   +V  Y  ++   C++ ++
Sbjct: 291 TEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKM 350

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
           D    ++ +M +  + P   T + +  GY   G  + A E L ++
Sbjct: 351 DEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLM 395


>gi|147857775|emb|CAN80799.1| hypothetical protein VITISV_019809 [Vitis vinifera]
          Length = 1099

 Score =  112 bits (280), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 86/372 (23%), Positives = 163/372 (43%), Gaps = 20/372 (5%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           ++F+ +++   +  N   AE    ++   GL P + TY   I     ++G+ N  EV  I
Sbjct: 195 YTFNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLI 254

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDK 410
           M Q   +  + +   L     +A  ++ A  L   ++    C   + ++  + A     +
Sbjct: 255 MPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGR 314

Query: 411 PERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
              A+ +F +M++K   P++ TY +L       N   E   M S+             M+
Sbjct: 315 KVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSE-------------MS 361

Query: 470 RNNIQHSHISMKNLLKALGAEGMIR---ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESH 526
              +  S ++   L+     EGMI    E++     +     T TYN ++  L + ++ H
Sbjct: 362 EKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVH 421

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
           +AM +  +M    + P+  TYN +I     +   +SA  L+S+M  +G  P   TY+  I
Sbjct: 422 KAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFI 481

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
             L   G  +EA  L D V  +G+  + ++Y  ++   C+ G+IDV   ++E+M  +   
Sbjct: 482 DTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACL 541

Query: 647 PDPSTCHFVFSG 658
           P+  T + +  G
Sbjct: 542 PNSYTYNVLIEG 553



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 134/601 (22%), Positives = 244/601 (40%), Gaps = 70/601 (11%)

Query: 93  ILNYCARSPDPLFVMETWRMME---EKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLG 149
           ++  C    D LFV+E +R M    E +     +CY  ++ +L K   ++E    +Y   
Sbjct: 127 MIKSCCSIEDVLFVLEVFRKMNADGEFKFKPTLRCYNTILMSLSKFLLIDEMKT-VYLEL 185

Query: 150 ERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNL 209
               I P +  +N+ +    K+ ++V A L    +    +  +  TYT L+      K +
Sbjct: 186 LNNQISPNIYTFNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGV 245

Query: 210 SAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMG------KLY 263
              +E++                 +      +  + +Y  L H   L   G      KL+
Sbjct: 246 DNAYEVF----------------LIMPQKGCQRNEVSYTNLIH--GLCEAGRINEALKLF 287

Query: 264 INRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLG 323
            + T +              N  P ++    +++ +I+A   +     A  L  +M+  G
Sbjct: 288 ADMTED--------------NCCPTVR----TYTVLIYALSGSGRKVEALNLFNEMKEKG 329

Query: 324 LQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAE 383
            +P+ HTY   I  +  +  +    ++L  M +  L P   T   L     K   +D A 
Sbjct: 330 CEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAF 389

Query: 384 ALLD--QISRC-TNPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLF 439
            +LD  + + C  N + ++  +       K  +A+ +  KM  +KL P + TY  L    
Sbjct: 390 EILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQ 449

Query: 440 GNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQY 499
             VN           ++SA R+ ++   M  N +     +    +  L  EG + E    
Sbjct: 450 CKVN----------DLESAYRLLSL---MNENGLVPDQWTYSVFIDTLCKEGRVEEAGTL 496

Query: 500 FCDSKTPLGTPTYNTVLHSLVEA----QESHRAMEIFKQMKTCGIPPNAATYNIMIDCCS 555
           F DS    G      +  +L++      +   A  + ++M      PN+ TYN++I+   
Sbjct: 497 F-DSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLC 555

Query: 556 IIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLD-LVSLEGIPHDV 614
             +  K AS+LV+ M+  G  P  +TYT LI  +L  G FD AL + + +VSL G   DV
Sbjct: 556 KEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSL-GYQPDV 614

Query: 615 LLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQV 674
             Y   L     +G ++ ++ +I +M++  + PD  T   +  GY   G  + A + L+ 
Sbjct: 615 CTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKC 674

Query: 675 L 675
           +
Sbjct: 675 M 675



 Score = 95.5 bits (236), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 116/565 (20%), Positives = 235/565 (41%), Gaps = 43/565 (7%)

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
           M+EK    N   Y +++  LCK   ++EA  ++  + E+ G+ P +  YN+ +    K  
Sbjct: 325 MKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEK-GLIPSVVTYNALIDGYCKEG 383

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELL----KLAVWQKNLSAVHEIWEDYIKHYSLSIF 228
            +  A   LDLM+S   G N  TY EL+    K     K ++ ++++ E   +  S S+ 
Sbjct: 384 MIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLE---RKLSPSLI 440

Query: 229 SLRKFVWSFTRLRDLKSAYETLQHMVALAMMG-----KLYINR-TSEGRLR-SSRLDIPI 281
           +    +    ++ DL+SAY  L  M    ++       ++I+    EGR+  +  L   +
Sbjct: 441 TYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSV 500

Query: 282 PLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSD 341
               +   +V+  +  D     G+     +A  L+ +M +    P+S+TY+  I  +  +
Sbjct: 501 KAKGVKANEVIYTALIDGYCKVGKID---VAYSLLERMLNDACLPNSYTYNVLIEGLCKE 557

Query: 342 RGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPK--PF 398
           + ++    ++  M    +KP   T   L  E  K    D A  + +  +S    P    +
Sbjct: 558 KKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTY 617

Query: 399 SAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFS-QVD 456
           +AFL A  +    E    + AKM ++ + PD+ TY +L   +  +   +   +     VD
Sbjct: 618 TAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVD 677

Query: 457 SAKRINAIEMDMARNNIQHSH-------------------ISMKNLLKALGAEGMIRELI 497
           +  + +   + +   N+ H +                   + + ++ K L  E  ++ L 
Sbjct: 678 TGCKPSLYIVSILIKNLSHENRMKETRSEIGIDSVSNVNSVDIADVWKTLEYEIALK-LF 736

Query: 498 QYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSII 557
           +   +    +    Y  ++    + +    A  +   MK  G+ P+   YN ++DCC  +
Sbjct: 737 EKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLLDCCCKL 796

Query: 558 RCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLY 617
             +  A  LV  MV +G  P   +Y  L+  L   G  ++A  +   +   G  +D + +
Sbjct: 797 GVYAEAVRLVDAMVENGLLPLLESYKLLVCGLYIEGSNEKAKAVFHGLLSCGYNYDEVAW 856

Query: 618 NTILKKACEKGRIDVIEFIIEQMHQ 642
             ++    ++  +D    +I+ M +
Sbjct: 857 KVLIDGLLKRDLVDECSELIDIMEE 881



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 94/394 (23%), Positives = 161/394 (40%), Gaps = 42/394 (10%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           S+S +++   R +  G+AE++ + M               I++  S   +   +EV + M
Sbjct: 103 SYSSMLNILIRARLLGVAEKIRISM---------------IKSCCSIEDVLFVLEVFRKM 147

Query: 355 QQNN---LKPQDSTIATLSVECSKALELD-----LAEALLDQISRCTNPKPFSAFLAA-C 405
             +     KP      T+ +  SK L +D       E L +QIS   N   F+A +   C
Sbjct: 148 NADGEFKFKPTLRCYNTILMSLSKFLLIDEMKTVYLELLNNQIS--PNIYTFNAMVNGYC 205

Query: 406 DTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIE 465
              +  E  +     ++  L PD  TY  L  + G+             VD+A  +  I 
Sbjct: 206 KIGNVVEAELYASKIVQAGLHPDTFTYTSL--ILGHCRN--------KGVDNAYEVFLI- 254

Query: 466 MDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPT---YNTVLHSLVEA 522
             M +   Q + +S  NL+  L   G I E ++ F D       PT   Y  ++++L  +
Sbjct: 255 --MPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGS 312

Query: 523 QESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTY 582
                A+ +F +MK  G  PN  TY ++ID          A  ++S M   G  P  +TY
Sbjct: 313 GRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTY 372

Query: 583 TALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642
            ALI      G  D+A  +LDL+       +   YN ++   C+K ++     ++ +M +
Sbjct: 373 NALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLE 432

Query: 643 NKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
            K+ P   T + +  G        SA   L +++
Sbjct: 433 RKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMN 466


>gi|125558723|gb|EAZ04259.1| hypothetical protein OsI_26403 [Oryza sativa Indica Group]
          Length = 528

 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 92/364 (25%), Positives = 159/364 (43%), Gaps = 19/364 (5%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLG-LQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           + + +I + G  +    AE L L+    G ++P +  Y+  ++  V    L+N  +VL  
Sbjct: 125 AVTALISSLGSARRVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEQVLDE 184

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMD 409
           M Q  + P ++T + L    ++A   + A  LL ++      KP    FS  LA      
Sbjct: 185 MSQCGVAPDEATYSLLVDAYTRAGRWESARILLKEME-ADGVKPSSYVFSRILAGFRDRG 243

Query: 410 KPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
           + ++A  +  +M    +RPD   Y ++   FG  N      + F ++    R   IE D+
Sbjct: 244 EWQKAFAVLREMHASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRM----REEGIEPDV 299

Query: 469 AR-NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHR 527
              N +  +H       +A+       EL     +S  PLGT TYN +++ L E Q    
Sbjct: 300 VTWNTLIDAHCKGGRHDRAI-------ELFDEMRESNCPLGTTTYNIMINLLGEEQRWEG 352

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
              +  +MK  G+ PN  TY  ++D       FK A   +  M  DG  P +  Y AL+ 
Sbjct: 353 VEAMLAEMKEQGLVPNIITYTTLVDVYGRSGRFKEAVDCIEAMKADGLKPSSTMYHALVN 412

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
                G  D ALN++  +  +G+    ++ N+++    E  RI     +++ M +N ++P
Sbjct: 413 AYAQRGLADHALNVVKAMRADGLEASTVVLNSLINAFGEDRRIAEAFSVLQFMKENGLRP 472

Query: 648 DPST 651
           D  T
Sbjct: 473 DVIT 476



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 81/381 (21%), Positives = 139/381 (36%), Gaps = 77/381 (20%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEV-LKIM 354
           FSD+I A  R +    A +L+   Q++GL P S+     I ++ S R +     + L+  
Sbjct: 91  FSDLISAFARARLPDAALELLASAQAIGLTPRSNAVTALISSLGSARRVAEAEALFLEFF 150

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERA 414
               +KP+      L     K   L  AE +LD++S+C                      
Sbjct: 151 LAGEIKPRTRAYNALLKGYVKIGSLKNAEQVLDEMSQC---------------------- 188

Query: 415 IKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQ 474
                     + PD  TY LL                   VD+  R    E         
Sbjct: 189 ---------GVAPDEATYSLL-------------------VDAYTRAGRWE--------- 211

Query: 475 HSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQ 534
               S + LLK + A+G+             P  +  ++ +L    +  E  +A  + ++
Sbjct: 212 ----SARILLKEMEADGV------------KP-SSYVFSRILAGFRDRGEWQKAFAVLRE 254

Query: 535 MKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGD 594
           M   G+ P+   YN+MID      C   A      M  +G  P  +T+  LI      G 
Sbjct: 255 MHASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGR 314

Query: 595 FDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHF 654
            D A+ L D +     P     YN ++    E+ R + +E ++ +M +  + P+  T   
Sbjct: 315 HDRAIELFDEMRESNCPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTT 374

Query: 655 VFSGYVNCGFHNSAMEALQVL 675
           +   Y   G    A++ ++ +
Sbjct: 375 LVDVYGRSGRFKEAVDCIEAM 395



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/192 (20%), Positives = 81/192 (42%), Gaps = 5/192 (2%)

Query: 487 LGAEGMIR-ELIQYFC---DSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPP 542
           + A G+I  E+   +C   +S+     P ++ ++ +   A+    A+E+    +  G+ P
Sbjct: 62  VAARGVIDCEVPSMYCGGGESRLEPDAPLFSDLISAFARARLPDAALELLASAQAIGLTP 121

Query: 543 NAATYNIMIDCCSIIRCFKSASAL-VSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNL 601
            +     +I      R    A AL +   +     P+T  Y AL+K  +  G    A  +
Sbjct: 122 RSNAVTALISSLGSARRVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEQV 181

Query: 602 LDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVN 661
           LD +S  G+  D   Y+ ++      GR +    ++++M  + V+P       + +G+ +
Sbjct: 182 LDEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRD 241

Query: 662 CGFHNSAMEALQ 673
            G    A   L+
Sbjct: 242 RGEWQKAFAVLR 253


>gi|15221549|ref|NP_176454.1| RNA processing factor 2 [Arabidopsis thaliana]
 gi|193806496|sp|Q9SXD1.2|PPR91_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62670, mitochondrial; Flags: Precursor
 gi|332195871|gb|AEE33992.1| RNA processing factor 2 [Arabidopsis thaliana]
          Length = 630

 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 91/366 (24%), Positives = 170/366 (46%), Gaps = 21/366 (5%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           ++  V++   +  ++ LA  L+ +M+   L+P    Y+  I  +   + + + + + K M
Sbjct: 223 TYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEM 282

Query: 355 QQNNLKPQDSTIATL-SVECSKALELDLAEALLDQISRCTNPK--PFSAFLAACDTMDKP 411
           +   ++P   T ++L S  C+     D +  L D I R  NP    FSA + A     K 
Sbjct: 283 ETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKL 342

Query: 412 ERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
             A K++ +M ++ + P I TY  L + F           M  ++D AK++      M  
Sbjct: 343 VEAEKLYDEMVKRSIDPSIVTYSSLINGFC----------MHDRLDEAKQMFEF---MVS 389

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCD-SKTPL--GTPTYNTVLHSLVEAQESHR 527
            +     ++   L+K       + E ++ F + S+  L   T TYN ++  L +A +   
Sbjct: 390 KHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDM 449

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A EIFK+M + G+PPN  TYN ++D        + A  +   + R    P   TY  +I+
Sbjct: 450 AQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIE 509

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
            +   G  ++  +L   +SL+G+  DV+ YNT++   C KG  +  + + ++M ++   P
Sbjct: 510 GMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLP 569

Query: 648 DPSTCH 653
           + S C+
Sbjct: 570 N-SGCY 574



 Score = 89.0 bits (219), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 94/396 (23%), Positives = 158/396 (39%), Gaps = 51/396 (12%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           FS ++ A  +     +   L  QMQ+LG+  + +TY   I        L   + VL  M 
Sbjct: 84  FSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMM 143

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQI---SRCTNPKPFSAFLAACDTMDKPE 412
           +   +P   T+++L      +  +  A AL+DQ+       N   F+  +      +K  
Sbjct: 144 KLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKAS 203

Query: 413 RAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471
            A+ +  +M  K  +PD+ TY ++      VN   + G               + D+A N
Sbjct: 204 EAMALIDRMVAKGCQPDLVTYGVV------VNGLCKRG---------------DTDLAFN 242

Query: 472 NIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEI 531
                                   L+      K   G   YNT++  L + +    A+ +
Sbjct: 243 ------------------------LLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNL 278

Query: 532 FKQMKTCGIPPNAATYNIMIDC-CSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590
           FK+M+T GI PN  TY+ +I C C+  R +  AS L+S M+     P   T++ALI   +
Sbjct: 279 FKEMETKGIRPNVVTYSSLISCLCNYGR-WSDASRLLSDMIERKINPDVFTFSALIDAFV 337

Query: 591 DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650
             G   EA  L D +    I   ++ Y++++   C   R+D  + + E M      PD  
Sbjct: 338 KEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVV 397

Query: 651 TCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           T + +  G+         ME  + +S R L     T
Sbjct: 398 TYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVT 433



 Score = 86.3 bits (212), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 86/400 (21%), Positives = 166/400 (41%), Gaps = 25/400 (6%)

Query: 276 RLDIPIPLNALPVMKVLRW-----SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHT 330
           R  +P+ L  L  M  L +     + S +++    ++    A  L+ QM   G QP++ T
Sbjct: 129 RSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVT 188

Query: 331 YDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQIS 390
           ++  I  +         M ++  M     +P   T   +     K  + DLA  LL+++ 
Sbjct: 189 FNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKME 248

Query: 391 RCTNPKPFSAFLAACDTMDKPER---AIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPY 446
           +         +    D + K +    A+ +F +M  K +RP++ TY  L S   N     
Sbjct: 249 QGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCN----- 303

Query: 447 EEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTP 506
                + +   A R+ +   DM    I     +   L+ A   EG + E  + + +    
Sbjct: 304 -----YGRWSDASRLLS---DMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKR 355

Query: 507 LGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSA 563
              P   TY+++++          A ++F+ M +    P+  TYN +I      +  +  
Sbjct: 356 SIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEG 415

Query: 564 SALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKK 623
             +   M + G    T+TY  LI+ L   GD D A  +   +  +G+P +++ YNT+L  
Sbjct: 416 MEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDG 475

Query: 624 ACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
            C+ G+++    + E + ++K++P   T + +  G    G
Sbjct: 476 LCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAG 515



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 87/433 (20%), Positives = 172/433 (39%), Gaps = 47/433 (10%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y +++  LCK G  + A NL+  + E+  + P + +YN+ +    K   M  A      M
Sbjct: 224 YGVVVNGLCKRGDTDLAFNLLNKM-EQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEM 282

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYSLSIFSLRKFVWSFTRLRDL 243
           +++ +  N VTY+ L+         S    +  D I +  +  +F+    + +F +   L
Sbjct: 283 ETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKL 342

Query: 244 KSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHAC 303
             A +    MV                  RS  +D  I             ++S +I+  
Sbjct: 343 VEAEKLYDEMVK-----------------RS--IDPSI------------VTYSSLINGF 371

Query: 304 GRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQD 363
                   A+Q+   M S    P   TY+  I+     + +  GMEV + M Q  L    
Sbjct: 372 CMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNT 431

Query: 364 STIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTM---DKPERAIKIFAK 420
            T   L     +A + D+A+ +  ++     P     +    D +    K E+A+ +F  
Sbjct: 432 VTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEY 491

Query: 421 M-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHIS 479
           + R K+ P I TY ++           +  ++F  +     +  ++ D+   N   S   
Sbjct: 492 LQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLS----LKGVKPDVVAYNTMISGFC 547

Query: 480 MKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCG 539
            K   +   A+ + +E+ +   D   P  +  YNT++ + +   +   + E+ K+M++CG
Sbjct: 548 RKGSKEE--ADALFKEMKE---DGTLP-NSGCYNTLIRARLRDGDREASAELIKEMRSCG 601

Query: 540 IPPNAATYNIMID 552
              +A+T  ++ +
Sbjct: 602 FAGDASTIGLVTN 614



 Score = 45.4 bits (106), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 55/292 (18%), Positives = 120/292 (41%), Gaps = 25/292 (8%)

Query: 93  ILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERY 152
           ++N   +  D          ME+ ++      Y  ++  LCK  ++++A NL   + E  
Sbjct: 227 VVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEM-ETK 285

Query: 153 GIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAV 212
           GI P +  Y+S +           A+  L  M  R +  +  T++ L+   V +  L   
Sbjct: 286 GIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEA 345

Query: 213 HEIWEDYIKH-YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYI-NRTSEG 270
            +++++ +K     SI +    +  F     L  A +  + MV+      +   N   +G
Sbjct: 346 EKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKG 405

Query: 271 RLRSSRLDIPIPLNALPVMKVLR-----------WSFSDVIHACGRTQNSGLAEQLMLQM 319
             +  R++          M+V R            +++ +I    +  +  +A+++  +M
Sbjct: 406 FCKYKRVE--------EGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEM 457

Query: 320 QSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
            S G+ P+  TY+  +  +  +  L   M V + +Q++ ++P   TI T ++
Sbjct: 458 VSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEP---TIYTYNI 506



 Score = 45.1 bits (105), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 70/367 (19%), Positives = 147/367 (40%), Gaps = 18/367 (4%)

Query: 10  FQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCR-GER 68
           +  I D  CK K H  +  N+  ++E       T G+    ++ ++   ++  LC  G  
Sbjct: 259 YNTIIDGLCKYK-HMDDALNLFKEME-------TKGIRPNVVTYSS---LISCLCNYGRW 307

Query: 69  SRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLM 128
           S AS LL ++     +     F  +++   +    +   + +  M ++ I  +   Y  +
Sbjct: 308 SDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSL 367

Query: 129 MQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRM 188
           +   C    L+EA  +  F+  ++  +P +  YN+ +    K   +         M  R 
Sbjct: 368 INGFCMHDRLDEAKQMFEFMVSKH-CFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRG 426

Query: 189 VGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH-YSLSIFSLRKFVWSFTRLRDLKSAY 247
           +  N VTY  L++      +     EI+++ +      +I +    +    +   L+ A 
Sbjct: 427 LVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAM 486

Query: 248 ETLQHMVALAMMGKLYI-NRTSEGRLRSSRLDIPIPLN---ALPVMKVLRWSFSDVIHAC 303
              +++    M   +Y  N   EG  ++ +++    L    +L  +K    +++ +I   
Sbjct: 487 VVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGF 546

Query: 304 GRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQD 363
            R  +   A+ L  +M+  G  P+S  Y+  IRA + D       E++K M+        
Sbjct: 547 CRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDA 606

Query: 364 STIATLS 370
           STI  ++
Sbjct: 607 STIGLVT 613


>gi|291622148|emb|CBJ23784.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 92/366 (25%), Positives = 170/366 (46%), Gaps = 21/366 (5%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           ++  V++   +  ++ LA  L+ +M+   L+P    Y   I  +  ++ + + + + K M
Sbjct: 223 TYGVVVNGLCKRGDTDLAFILLNKMEQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEM 282

Query: 355 QQNNLKPQDSTIATL-SVECSKALELDLAEALLDQISRCTNPK--PFSAFLAACDTMDKP 411
           +   ++P   T ++L S  C+     D +  L D I R  NP    FSA + A     K 
Sbjct: 283 ETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKL 342

Query: 412 ERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
             A K++ +M ++ + P I TY  L + F           M  ++D AK++      M  
Sbjct: 343 VEAEKLYDEMVKRSIDPSIVTYSSLINGF----------CMHDRLDEAKQMFEF---MVS 389

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCD-SKTPL--GTPTYNTVLHSLVEAQESHR 527
            +     +S   L+K       + E ++ F + S+  L   T TY T++  L +A +   
Sbjct: 390 KHCFPDVVSYSTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDM 449

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A EIFK+M + G+PPN  TYN ++D        + A  +   + R    P   TY  +I+
Sbjct: 450 AQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIE 509

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
            +   G  ++  +L   +SL+G+  DV+ YNT++   C KG  +  + + ++M ++   P
Sbjct: 510 GMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLP 569

Query: 648 DPSTCH 653
           + S C+
Sbjct: 570 N-SGCY 574



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 85/400 (21%), Positives = 166/400 (41%), Gaps = 25/400 (6%)

Query: 276 RLDIPIPLNALPVMKVLRW-----SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHT 330
           R  +P+ L  L  M  L +     + S +++    ++    A  L+ QM   G QP++ T
Sbjct: 129 RSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVT 188

Query: 331 YDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQIS 390
           ++  I  +         + ++  M     +P   T   +     K  + DLA  LL+++ 
Sbjct: 189 FNTLIHGLFLHNKASEAVALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFILLNKME 248

Query: 391 RCTNPKPFSAFLAACDTMDKPER---AIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPY 446
           +         +    D + K +    A+ +F +M  K +RP++ TY  L S   N     
Sbjct: 249 QGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCN----- 303

Query: 447 EEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTP 506
                + +   A R+ +   DM    I     +   L+ A   EG + E  + + +    
Sbjct: 304 -----YGRWSDASRLLS---DMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKR 355

Query: 507 LGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSA 563
              P   TY+++++          A ++F+ M +    P+  +Y+ +I      +     
Sbjct: 356 SIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVSYSTLIKGFCKAKRVDEG 415

Query: 564 SALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKK 623
             L   M + G    T+TYT LI+ L   GD D A  +   +  +G+P +++ YNT+L  
Sbjct: 416 MELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDG 475

Query: 624 ACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
            C+ G+++    + E + ++K++P   T + +  G    G
Sbjct: 476 LCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAG 515



 Score = 82.4 bits (202), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 91/396 (22%), Positives = 156/396 (39%), Gaps = 51/396 (12%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           FS ++ A  +     +   L  QMQ+LG+  + +TY   I        L   + VL  M 
Sbjct: 84  FSKLLSAIAKMNKFDVVISLGEQMQNLGMPHNHYTYSILINCFCRRSQLPLALAVLGKMM 143

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQI---SRCTNPKPFSAFLAACDTMDKPE 412
           +   +P   T+++L      +  +  A AL+DQ+       N   F+  +      +K  
Sbjct: 144 KLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKAS 203

Query: 413 RAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471
            A+ +  +M  K  +PD+ TY ++      VN   + G               + D+A  
Sbjct: 204 EAVALIDRMVAKGCQPDLVTYGVV------VNGLCKRG---------------DTDLAF- 241

Query: 472 NIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEI 531
                                   L+      K   G   Y T++  L + +    A+ +
Sbjct: 242 -----------------------ILLNKMEQGKLEPGVLIYTTIIDGLCKNKHMDDALNL 278

Query: 532 FKQMKTCGIPPNAATYNIMIDC-CSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590
           FK+M+T GI PN  TY+ +I C C+  R +  AS L+S M+     P   T++ALI   +
Sbjct: 279 FKEMETKGIRPNVVTYSSLISCLCNYGR-WSDASRLLSDMIERKINPDVFTFSALIDAFV 337

Query: 591 DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650
             G   EA  L D +    I   ++ Y++++   C   R+D  + + E M      PD  
Sbjct: 338 KEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVV 397

Query: 651 TCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           +   +  G+      +  ME  + +S R L     T
Sbjct: 398 SYSTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVT 433



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/235 (22%), Positives = 102/235 (43%), Gaps = 13/235 (5%)

Query: 425 LRPDIRTYELLFSLF------GNVNAPYEEGNMFSQVDSAKRINAIEM--DMARNNIQHS 476
           +R ++ T    FS F      G  +  Y E    + +   K  +A+ +  +M ++    S
Sbjct: 21  VRGNVATVSPSFSFFWRRAFSGKTSYDYREKLSRNGLSELKLDDAVALFGEMVKSRPFPS 80

Query: 477 HISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP----TYNTVLHSLVEAQESHRAMEIF 532
            I    LL A+        +I    +    LG P    TY+ +++      +   A+ + 
Sbjct: 81  IIEFSKLLSAIAKMNKFDVVIS-LGEQMQNLGMPHNHYTYSILINCFCRRSQLPLALAVL 139

Query: 533 KQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDY 592
            +M   G  PN  T + +++     +    A ALV  M   G+ P T+T+  LI  L  +
Sbjct: 140 GKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLH 199

Query: 593 GDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
               EA+ L+D +  +G   D++ Y  ++   C++G  D+   ++ +M Q K++P
Sbjct: 200 NKASEAVALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFILLNKMEQGKLEP 254



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 84/433 (19%), Positives = 170/433 (39%), Gaps = 47/433 (10%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y +++  LCK G  + A  L+  + E+  + P + +Y + +    K   M  A      M
Sbjct: 224 YGVVVNGLCKRGDTDLAFILLNKM-EQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEM 282

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYSLSIFSLRKFVWSFTRLRDL 243
           +++ +  N VTY+ L+         S    +  D I +  +  +F+    + +F +   L
Sbjct: 283 ETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKL 342

Query: 244 KSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHAC 303
             A +    MV                  RS  +D  I             ++S +I+  
Sbjct: 343 VEAEKLYDEMVK-----------------RS--IDPSI------------VTYSSLINGF 371

Query: 304 GRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQD 363
                   A+Q+   M S    P   +Y   I+     + +  GME+ + M Q  L    
Sbjct: 372 CMHDRLDEAKQMFEFMVSKHCFPDVVSYSTLIKGFCKAKRVDEGMELFREMSQRGLVGNT 431

Query: 364 STIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTM---DKPERAIKIFAK 420
            T  TL     +A + D+A+ +  ++     P     +    D +    K E+A+ +F  
Sbjct: 432 VTYTTLIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEY 491

Query: 421 M-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHIS 479
           + R K+ P I TY ++           +  ++F  +     +  ++ D+   N   S   
Sbjct: 492 LQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLS----LKGVKPDVVAYNTMISGFC 547

Query: 480 MKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCG 539
            K   +   A+ + +E+ +   D   P  +  YNT++ + +   +   + E+ K+M++CG
Sbjct: 548 RKGSKEE--ADALFKEMKE---DGTLP-NSGCYNTLIRARLRDGDREASAELIKEMRSCG 601

Query: 540 IPPNAATYNIMID 552
              +A+T  ++ +
Sbjct: 602 FAGDASTIGLVTN 614



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 53/264 (20%), Positives = 116/264 (43%), Gaps = 9/264 (3%)

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
           ME+ ++      Y  ++  LCK  ++++A NL   + E  GI P +  Y+S +       
Sbjct: 247 MEQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEM-ETKGIRPNVVTYSSLISCLCNYG 305

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH-YSLSIFSLR 231
               A+  L  M  R +  +  T++ L+   V +  L    +++++ +K     SI +  
Sbjct: 306 RWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYS 365

Query: 232 KFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRT-SEGRLRSSRLDIPIPLNALPVMK 290
             +  F     L  A +  + MV+      +    T  +G  ++ R+D  + L      +
Sbjct: 366 SLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVSYSTLIKGFCKAKRVDEGMELFREMSQR 425

Query: 291 VL---RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNG 347
            L     +++ +I    +  +  +A+++  +M S G+ P+  TY+  +  +  +  L   
Sbjct: 426 GLVGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKA 485

Query: 348 MEVLKIMQQNNLKPQDSTIATLSV 371
           M V + +Q++ ++P   TI T ++
Sbjct: 486 MVVFEYLQRSKMEP---TIYTYNI 506



 Score = 45.1 bits (105), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 70/367 (19%), Positives = 149/367 (40%), Gaps = 18/367 (4%)

Query: 10  FQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCR-GER 68
           +  I D  CK+K H  +  N+  ++E       T G+    ++ ++   ++  LC  G  
Sbjct: 259 YTTIIDGLCKNK-HMDDALNLFKEME-------TKGIRPNVVTYSS---LISCLCNYGRW 307

Query: 69  SRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLM 128
           S AS LL ++     +     F  +++   +    +   + +  M ++ I  +   Y  +
Sbjct: 308 SDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSL 367

Query: 129 MQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRM 188
           +   C    L+EA  +  F+  ++  +P +  Y++ +    K   +         M  R 
Sbjct: 368 INGFCMHDRLDEAKQMFEFMVSKH-CFPDVVSYSTLIKGFCKAKRVDEGMELFREMSQRG 426

Query: 189 VGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH-YSLSIFSLRKFVWSFTRLRDLKSAY 247
           +  N VTYT L++      +     EI+++ +      +I +    +    +   L+ A 
Sbjct: 427 LVGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAM 486

Query: 248 ETLQHMVALAMMGKLYI-NRTSEGRLRSSRLDIPIPLN---ALPVMKVLRWSFSDVIHAC 303
              +++    M   +Y  N   EG  ++ +++    L    +L  +K    +++ +I   
Sbjct: 487 VVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGF 546

Query: 304 GRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQD 363
            R  +   A+ L  +M+  G  P+S  Y+  IRA + D       E++K M+        
Sbjct: 547 CRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDA 606

Query: 364 STIATLS 370
           STI  ++
Sbjct: 607 STIGLVT 613


>gi|5454208|gb|AAD43623.1|AC005698_22 T3P18.22 [Arabidopsis thaliana]
          Length = 425

 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 91/366 (24%), Positives = 170/366 (46%), Gaps = 21/366 (5%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           ++  V++   +  ++ LA  L+ +M+   L+P    Y+  I  +   + + + + + K M
Sbjct: 18  TYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEM 77

Query: 355 QQNNLKPQDSTIATL-SVECSKALELDLAEALLDQISRCTNPK--PFSAFLAACDTMDKP 411
           +   ++P   T ++L S  C+     D +  L D I R  NP    FSA + A     K 
Sbjct: 78  ETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKL 137

Query: 412 ERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
             A K++ +M ++ + P I TY  L + F           M  ++D AK++      M  
Sbjct: 138 VEAEKLYDEMVKRSIDPSIVTYSSLINGF----------CMHDRLDEAKQMFEF---MVS 184

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCD-SKTPL--GTPTYNTVLHSLVEAQESHR 527
            +     ++   L+K       + E ++ F + S+  L   T TYN ++  L +A +   
Sbjct: 185 KHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDM 244

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A EIFK+M + G+PPN  TYN ++D        + A  +   + R    P   TY  +I+
Sbjct: 245 AQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIE 304

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
            +   G  ++  +L   +SL+G+  DV+ YNT++   C KG  +  + + ++M ++   P
Sbjct: 305 GMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLP 364

Query: 648 DPSTCH 653
           + S C+
Sbjct: 365 N-SGCY 369



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 84/180 (46%), Gaps = 2/180 (1%)

Query: 508 GTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC-CSIIRCFKSASAL 566
           G   YNT++  L + +    A+ +FK+M+T GI PN  TY+ +I C C+  R +  AS L
Sbjct: 50  GVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGR-WSDASRL 108

Query: 567 VSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE 626
           +S M+     P   T++ALI   +  G   EA  L D +    I   ++ Y++++   C 
Sbjct: 109 LSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCM 168

Query: 627 KGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
             R+D  + + E M      PD  T + +  G+         ME  + +S R L     T
Sbjct: 169 HDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVT 228



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 58/256 (22%), Positives = 112/256 (43%), Gaps = 17/256 (6%)

Query: 412 ERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           + A+ +F +M  K +RP++ TY  L S   N          + +   A R+ +   DM  
Sbjct: 68  DDALNLFKEMETKGIRPNVVTYSSLISCLCN----------YGRWSDASRLLS---DMIE 114

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHR 527
             I     +   L+ A   EG + E  + + +       P   TY+++++          
Sbjct: 115 RKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDE 174

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A ++F+ M +    P+  TYN +I      +  +    +   M + G    T+TY  LI+
Sbjct: 175 AKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQ 234

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
            L   GD D A  +   +  +G+P +++ YNT+L   C+ G+++    + E + ++K++P
Sbjct: 235 GLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEP 294

Query: 648 DPSTCHFVFSGYVNCG 663
              T + +  G    G
Sbjct: 295 TIYTYNIMIEGMCKAG 310



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 87/433 (20%), Positives = 172/433 (39%), Gaps = 47/433 (10%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y +++  LCK G  + A NL+  + E+  + P + +YN+ +    K   M  A      M
Sbjct: 19  YGVVVNGLCKRGDTDLAFNLLNKM-EQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEM 77

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYSLSIFSLRKFVWSFTRLRDL 243
           +++ +  N VTY+ L+         S    +  D I +  +  +F+    + +F +   L
Sbjct: 78  ETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKL 137

Query: 244 KSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHAC 303
             A +    MV                  RS  +D  I             ++S +I+  
Sbjct: 138 VEAEKLYDEMVK-----------------RS--IDPSI------------VTYSSLINGF 166

Query: 304 GRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQD 363
                   A+Q+   M S    P   TY+  I+     + +  GMEV + M Q  L    
Sbjct: 167 CMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNT 226

Query: 364 STIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTM---DKPERAIKIFAK 420
            T   L     +A + D+A+ +  ++     P     +    D +    K E+A+ +F  
Sbjct: 227 VTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEY 286

Query: 421 M-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHIS 479
           + R K+ P I TY ++           +  ++F  +     +  ++ D+   N   S   
Sbjct: 287 LQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNL----SLKGVKPDVVAYNTMISGFC 342

Query: 480 MKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCG 539
            K   +   A+ + +E+ +   D   P  +  YNT++ + +   +   + E+ K+M++CG
Sbjct: 343 RKGSKEE--ADALFKEMKE---DGTLP-NSGCYNTLIRARLRDGDREASAELIKEMRSCG 396

Query: 540 IPPNAATYNIMID 552
              +A+T  ++ +
Sbjct: 397 FAGDASTIGLVTN 409



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 75/165 (45%), Gaps = 3/165 (1%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TY  V++ L +  ++  A  +  +M+   + P    YN +ID     +    A  L   M
Sbjct: 18  TYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEM 77

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
              G  P  +TY++LI  L +YG + +A  LL  +    I  DV  ++ ++    ++G++
Sbjct: 78  ETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKL 137

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
              E + ++M +  + P   T   + +G+     H+   EA Q+ 
Sbjct: 138 VEAEKLYDEMVKRSIDPSIVTYSSLINGFC---MHDRLDEAKQMF 179



 Score = 55.8 bits (133), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 36/165 (21%), Positives = 75/165 (45%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           T++ ++ + V+  +   A +++ +M    I P+  TY+ +I+   +      A  +   M
Sbjct: 123 TFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFM 182

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           V    +P  +TY  LIK    Y   +E + +   +S  G+  + + YN +++   + G  
Sbjct: 183 VSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDC 242

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
           D+ + I ++M  + V P+  T + +  G    G    AM   + L
Sbjct: 243 DMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYL 287



 Score = 50.4 bits (119), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 57/123 (46%)

Query: 565 ALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKA 624
           AL+  MV  G  P  +TY  ++  L   GD D A NLL+ +    +   VL+YNTI+   
Sbjct: 2   ALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGL 61

Query: 625 CEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEV 684
           C+   +D    + ++M    ++P+  T   + S   N G  + A   L  +  R +  +V
Sbjct: 62  CKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDV 121

Query: 685 STL 687
            T 
Sbjct: 122 FTF 124



 Score = 46.2 bits (108), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 70/367 (19%), Positives = 147/367 (40%), Gaps = 18/367 (4%)

Query: 10  FQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCR-GER 68
           +  I D  CK K H  +  N+  ++E       T G+    ++ ++   ++  LC  G  
Sbjct: 54  YNTIIDGLCKYK-HMDDALNLFKEME-------TKGIRPNVVTYSS---LISCLCNYGRW 102

Query: 69  SRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLM 128
           S AS LL ++     +     F  +++   +    +   + +  M ++ I  +   Y  +
Sbjct: 103 SDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSL 162

Query: 129 MQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRM 188
           +   C    L+EA  +  F+  ++  +P +  YN+ +    K   +         M  R 
Sbjct: 163 INGFCMHDRLDEAKQMFEFMVSKH-CFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRG 221

Query: 189 VGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH-YSLSIFSLRKFVWSFTRLRDLKSAY 247
           +  N VTY  L++      +     EI+++ +      +I +    +    +   L+ A 
Sbjct: 222 LVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAM 281

Query: 248 ETLQHMVALAMMGKLYI-NRTSEGRLRSSRLDIPIPLN---ALPVMKVLRWSFSDVIHAC 303
              +++    M   +Y  N   EG  ++ +++    L    +L  +K    +++ +I   
Sbjct: 282 VVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGF 341

Query: 304 GRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQD 363
            R  +   A+ L  +M+  G  P+S  Y+  IRA + D       E++K M+        
Sbjct: 342 CRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDA 401

Query: 364 STIATLS 370
           STI  ++
Sbjct: 402 STIGLVT 408


>gi|6630464|gb|AAF19552.1|AC007190_20 F23N19.4 [Arabidopsis thaliana]
          Length = 1244

 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 91/366 (24%), Positives = 170/366 (46%), Gaps = 21/366 (5%)

Query: 295  SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
            ++  V++   +  ++ LA  L+ +M+   L+P    Y+  I  +   + + + + + K M
Sbjct: 837  TYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEM 896

Query: 355  QQNNLKPQDSTIATL-SVECSKALELDLAEALLDQISRCTNPK--PFSAFLAACDTMDKP 411
            +   ++P   T ++L S  C+     D +  L D I R  NP    FSA + A     K 
Sbjct: 897  ETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKL 956

Query: 412  ERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
              A K++ +M ++ + P I TY  L + F           M  ++D AK++      M  
Sbjct: 957  VEAEKLYDEMVKRSIDPSIVTYSSLINGFC----------MHDRLDEAKQMFEF---MVS 1003

Query: 471  NNIQHSHISMKNLLKALGAEGMIRELIQYFCD-SKTPL--GTPTYNTVLHSLVEAQESHR 527
             +     ++   L+K       + E ++ F + S+  L   T TYN ++  L +A +   
Sbjct: 1004 KHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDM 1063

Query: 528  AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
            A EIFK+M + G+PPN  TYN ++D        + A  +   + R    P   TY  +I+
Sbjct: 1064 AQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIE 1123

Query: 588  ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
             +   G  ++  +L   +SL+G+  DV+ YNT++   C KG  +  + + ++M ++   P
Sbjct: 1124 GMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLP 1183

Query: 648  DPSTCH 653
            + S C+
Sbjct: 1184 N-SGCY 1188



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 142/638 (22%), Positives = 251/638 (39%), Gaps = 115/638 (18%)

Query: 87   ADDFFHILNYCARSPD-------------------PLFVMETWRMMEEKEIGLNNKCYLL 127
            A +FF  +++   SPD                    L + E    M+++E+ L+   Y  
Sbjct: 487  AQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFED---MQKREMDLDIVTYTT 543

Query: 128  MMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFL-GACAK--LHSMVHANLCLDLM 184
            +++ +CK G +EEA +L   L  + G+ P +  Y + + G C K  LH +          
Sbjct: 544  VIRGMCKTGKVEEAWSLFCSLSLK-GLKPDIVTYTTMMSGLCTKGLLHEV---------- 592

Query: 185  DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFV---WSFTRLR 241
                    E  YT++ +  + + + +             +LS   ++K +   ++ + L+
Sbjct: 593  --------EALYTKMKQEGLMKNDCTLSD-------GDITLSAELIKKMLSCGYAPSLLK 637

Query: 242  DLKSAYETLQHMVALAMMGKL---YINRTSEGRLRSSRLDIPIPL-----NALPVMKVLR 293
            D+KS        +  A  GK    Y  + S   L   +LD  + L      + P   ++ 
Sbjct: 638  DIKSGVCKKALSLLRAFSGKTSYDYREKLSRNGLSELKLDDAVALFGEMVKSRPFPSIIE 697

Query: 294  WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
              FS ++ A  +     +   L  QMQ+LG+  + +TY   I        L   + VL  
Sbjct: 698  --FSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGK 755

Query: 354  MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI---SRCTNPKPFSAFLAACDTMDK 410
            M +   +P   T+++L      +  +  A AL+DQ+       N   F+  +      +K
Sbjct: 756  MMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNK 815

Query: 411  PERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
               A+ +  +M  K  +PD+ TY ++      VN   + G               + D+A
Sbjct: 816  ASEAMALIDRMVAKGCQPDLVTYGVV------VNGLCKRG---------------DTDLA 854

Query: 470  RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAM 529
             N                        L+      K   G   YNT++  L + +    A+
Sbjct: 855  FN------------------------LLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDAL 890

Query: 530  EIFKQMKTCGIPPNAATYNIMIDC-CSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
             +FK+M+T GI PN  TY+ +I C C+  R +  AS L+S M+     P   T++ALI  
Sbjct: 891  NLFKEMETKGIRPNVVTYSSLISCLCNYGR-WSDASRLLSDMIERKINPDVFTFSALIDA 949

Query: 589  LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
             +  G   EA  L D +    I   ++ Y++++   C   R+D  + + E M      PD
Sbjct: 950  FVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPD 1009

Query: 649  PSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
              T + +  G+         ME  + +S R L     T
Sbjct: 1010 VVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVT 1047



 Score = 86.7 bits (213), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 94/433 (21%), Positives = 176/433 (40%), Gaps = 27/433 (6%)

Query: 266 RTSEGRLRSSRLDIPIPL-----NALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQ 320
           R S+ RLR  +L+  I L      + P   ++   F+ ++ A  + +   +   L  +M+
Sbjct: 158 RLSKTRLRDIKLNDAIDLFSDMVKSRPFPSIV--DFNRLLSAIVKLKKYDVVISLGKKME 215

Query: 321 SLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELD 380
            LG++   +T++  I        +   + +L  M +   +P   TI +L     +   + 
Sbjct: 216 VLGIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVS 275

Query: 381 LAEALLDQISRCTNPKPFSAFLAACDTMDKPER---AIKIFAKM-RQKLRPDIRTYELLF 436
            A +L+D++          A+ A  D++ K +R   A   F ++ R+ +RP++ TY  L 
Sbjct: 276 DAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALV 335

Query: 437 SLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMI--- 493
           +   N +   +   + S             DM +  I  + I+   LL A    G +   
Sbjct: 336 NGLCNSSRWSDAARLLS-------------DMIKKKITPNVITYSALLDAFVKNGKVLEA 382

Query: 494 RELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC 553
           +EL +            TY+++++ L        A ++F  M + G   +  +YN +I+ 
Sbjct: 383 KELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLING 442

Query: 554 CSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHD 613
               +  +    L   M + G    T+TY  LI+     GD D+A      +   GI  D
Sbjct: 443 FCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPD 502

Query: 614 VLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           +  YN +L   C+ G ++    I E M + ++  D  T   V  G    G    A     
Sbjct: 503 IWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFC 562

Query: 674 VLSMRMLCEEVST 686
            LS++ L  ++ T
Sbjct: 563 SLSLKGLKPDIVT 575



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 158/734 (21%), Positives = 266/734 (36%), Gaps = 127/734 (17%)

Query: 2   YRPLLRTRFQLIADSFCKSK--------FHKHERRNVANKLELSRTLTTTMGLNEESISK 53
           Y+P +   +  I DS CK+K        F + ER+ +   +                   
Sbjct: 289 YKPDI-VAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNV------------------- 328

Query: 54  ATQMQIVDALCRGER-SRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRM 112
            T   +V+ LC   R S A+ LL ++     +     +  +L+   ++   L   E +  
Sbjct: 329 VTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEE 388

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
           M    I  +   Y  ++  LC    ++EA+ +   +  + G    +  YN+ +    K  
Sbjct: 389 MVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSK-GCLADVVSYNTLINGFCKAK 447

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRK 232
            +         M  R +  N VTY  L++      ++    E +        +  F +  
Sbjct: 448 RVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFS------QMDFFGISP 501

Query: 233 FVWSFT-RLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKV 291
            +W++   L  L    E  + +V    M K           R   LDI            
Sbjct: 502 DIWTYNILLGGLCDNGELEKALVIFEDMQK-----------REMDLDIV----------- 539

Query: 292 LRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVL 351
              +++ VI    +T     A  L   +   GL+P   TY   +  + + +GL + +E L
Sbjct: 540 ---TYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCT-KGLLHEVEAL 595

Query: 352 KI-MQQNNLKPQDSTIA----TLSVE-CSKALELDLAEALLDQISRCTNPKPFSAFLA-- 403
              M+Q  L   D T++    TLS E   K L    A +LL  I      K  S   A  
Sbjct: 596 YTKMKQEGLMKNDCTLSDGDITLSAELIKKMLSCGYAPSLLKDIKSGVCKKALSLLRAFS 655

Query: 404 ---ACDTMDKPER----------AIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEG 449
              + D  +K  R          A+ +F +M + +  P I  +  L S    +N      
Sbjct: 656 GKTSYDYREKLSRNGLSELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNK----- 710

Query: 450 NMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCD-SKTPLG 508
             F  V S      +   M    I H+H +                LI  FC  S+ PL 
Sbjct: 711 --FDVVIS------LGEQMQNLGIPHNHYTYS-------------ILINCFCRRSQLPLA 749

Query: 509 TP---------------TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC 553
                            T +++L+    ++    A+ +  QM   G  PN  T+N +I  
Sbjct: 750 LAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHG 809

Query: 554 CSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHD 613
             +      A AL+  MV  G  P  +TY  ++  L   GD D A NLL+ +    +   
Sbjct: 810 LFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPG 869

Query: 614 VLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           VL+YNTI+   C+   +D    + ++M    ++P+  T   + S   N G  + A   L 
Sbjct: 870 VLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLS 929

Query: 674 VLSMRMLCEEVSTL 687
            +  R +  +V T 
Sbjct: 930 DMIERKINPDVFTF 943



 Score = 72.8 bits (177), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 115/585 (19%), Positives = 236/585 (40%), Gaps = 55/585 (9%)

Query: 107 METWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLG 166
           M+ +R M ++ +  N   Y  ++Q   + G +++A      + + +GI P +  YN  LG
Sbjct: 453 MKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQM-DFFGISPDIWTYNILLG 511

Query: 167 ACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLS 226
                  +  A +  + M  R +  + VTYT +++          V E W  +    SLS
Sbjct: 512 GLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIR---GMCKTGKVEEAWSLFC---SLS 565

Query: 227 IFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRS--SRLDIPIPLN 284
           +  L+  + ++T +         L  + AL      Y     EG +++  +  D  I L+
Sbjct: 566 LKGLKPDIVTYTTMMSGLCTKGLLHEVEAL------YTKMKQEGLMKNDCTLSDGDITLS 619

Query: 285 ALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGL 344
           A  + K+L   ++  +    +   SG+ ++ +  +++   + S    +   R  +S+  L
Sbjct: 620 AELIKKMLSCGYAPSLL---KDIKSGVCKKALSLLRAFSGKTSYDYREKLSRNGLSELKL 676

Query: 345 RNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPK---PFSAF 401
            + + +   M ++   P     + L    +K  + D+  +L +Q+     P     +S  
Sbjct: 677 DDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSIL 736

Query: 402 LAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKR 460
           +       +   A+ +  KM +    P+I T   L + + +                +KR
Sbjct: 737 INCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCH----------------SKR 780

Query: 461 IN---AIEMDMARNNIQHSHISMKNLL-------KALGAEGMIRELIQYFCDSKTPLGTP 510
           I+   A+   M     Q + ++   L+       KA  A  +I  ++   C         
Sbjct: 781 ISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLV---- 836

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TY  V++ L +  ++  A  +  +M+   + P    YN +ID     +    A  L   M
Sbjct: 837 TYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEM 896

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
              G  P  +TY++LI  L +YG + +A  LL  +    I  DV  ++ ++    ++G++
Sbjct: 897 ETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKL 956

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
              E + ++M +  + P   T   + +G+     H+   EA Q+ 
Sbjct: 957 VEAEKLYDEMVKRSIDPSIVTYSSLINGFC---MHDRLDEAKQMF 998



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 85/433 (19%), Positives = 171/433 (39%), Gaps = 47/433 (10%)

Query: 125  YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
            Y +++  LCK G  + A NL+  + E+  + P + +YN+ +    K   M  A      M
Sbjct: 838  YGVVVNGLCKRGDTDLAFNLLNKM-EQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEM 896

Query: 185  DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYSLSIFSLRKFVWSFTRLRDL 243
            +++ +  N VTY+ L+         S    +  D I +  +  +F+    + +F +   L
Sbjct: 897  ETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKL 956

Query: 244  KSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHAC 303
              A +    MV  +                   +D  I             ++S +I+  
Sbjct: 957  VEAEKLYDEMVKRS-------------------IDPSIV------------TYSSLINGF 985

Query: 304  GRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQD 363
                    A+Q+   M S    P   TY+  I+     + +  GMEV + M Q  L    
Sbjct: 986  CMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNT 1045

Query: 364  STIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTM---DKPERAIKIFAK 420
             T   L     +A + D+A+ +  ++     P     +    D +    K E+A+ +F  
Sbjct: 1046 VTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEY 1105

Query: 421  M-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHIS 479
            + R K+ P I TY ++           +  ++F  +     +  ++ D+   N   S   
Sbjct: 1106 LQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLS----LKGVKPDVVAYNTMISGFC 1161

Query: 480  MKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCG 539
             K   +   A+ + +E+ +   D   P  +  YNT++ + +   +   + E+ K+M++CG
Sbjct: 1162 RKGSKEE--ADALFKEMKE---DGTLP-NSGCYNTLIRARLRDGDREASAELIKEMRSCG 1215

Query: 540  IPPNAATYNIMID 552
               +A+T  ++ +
Sbjct: 1216 FAGDASTIGLVTN 1228



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 117/615 (19%), Positives = 227/615 (36%), Gaps = 105/615 (17%)

Query: 128 MMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSR 187
           ++   C+   + +A +L+  + E  G  P +  YN+ + +  K   +  A      ++ +
Sbjct: 264 LVNGFCRRNRVSDAVSLVDKMVE-IGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERK 322

Query: 188 MVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYSLSIFSLRKFVWSFTRLRDLKSA 246
            +  N VTYT L+         S    +  D I K  + ++ +    + +F +   +  A
Sbjct: 323 GIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEA 382

Query: 247 YETLQHMVALAMMGKLYINRT-SEGRLRSSRLDIPIPLNALPVMK---VLRWSFSDVIHA 302
            E  + MV +++   +    +   G     R+D    +  L V K       S++ +I+ 
Sbjct: 383 KELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLING 442

Query: 303 CGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQ 362
             + +      +L  +M   GL  ++ TY+  I+       +    E    M    + P 
Sbjct: 443 FCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPD 502

Query: 363 DSTIATL------SVECSKAL----ELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPE 412
             T   L      + E  KAL    ++   E  LD ++  T           C T  K E
Sbjct: 503 IWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTT------VIRGMCKT-GKVE 555

Query: 413 RAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471
            A  +F  +  K L+PDI TY  + S        +E   +++++     +   +  ++  
Sbjct: 556 EAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKN-DCTLSDG 614

Query: 472 NIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPL-----GTPTYN------------- 513
           +I  S   +K +L    A  +++++    C     L     G  +Y+             
Sbjct: 615 DITLSAELIKKMLSCGYAPSLLKDIKSGVCKKALSLLRAFSGKTSYDYREKLSRNGLSEL 674

Query: 514 -------------------------TVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYN 548
                                     +L ++ +  +    + + +QM+  GIP N  TY+
Sbjct: 675 KLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYS 734

Query: 549 IMIDC------------------------------------CSIIRCFKSASALVSMMVR 572
           I+I+C                                    C   R    A ALV  M  
Sbjct: 735 ILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKR-ISEAVALVDQMFV 793

Query: 573 DGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDV 632
            G+ P T+T+  LI  L  +    EA+ L+D +  +G   D++ Y  ++   C++G  D+
Sbjct: 794 TGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDL 853

Query: 633 IEFIIEQMHQNKVQP 647
              ++ +M Q K++P
Sbjct: 854 AFNLLNKMEQGKLEP 868



 Score = 45.4 bits (106), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 70/367 (19%), Positives = 147/367 (40%), Gaps = 18/367 (4%)

Query: 10   FQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCR-GER 68
            +  I D  CK K H  +  N+  ++E       T G+    ++ ++   ++  LC  G  
Sbjct: 873  YNTIIDGLCKYK-HMDDALNLFKEME-------TKGIRPNVVTYSS---LISCLCNYGRW 921

Query: 69   SRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLM 128
            S AS LL ++     +     F  +++   +    +   + +  M ++ I  +   Y  +
Sbjct: 922  SDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSL 981

Query: 129  MQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRM 188
            +   C    L+EA  +  F+  ++  +P +  YN+ +    K   +         M  R 
Sbjct: 982  INGFCMHDRLDEAKQMFEFMVSKH-CFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRG 1040

Query: 189  VGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH-YSLSIFSLRKFVWSFTRLRDLKSAY 247
            +  N VTY  L++      +     EI+++ +      +I +    +    +   L+ A 
Sbjct: 1041 LVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAM 1100

Query: 248  ETLQHMVALAMMGKLYI-NRTSEGRLRSSRLDIPIPLN---ALPVMKVLRWSFSDVIHAC 303
               +++    M   +Y  N   EG  ++ +++    L    +L  +K    +++ +I   
Sbjct: 1101 VVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGF 1160

Query: 304  GRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQD 363
             R  +   A+ L  +M+  G  P+S  Y+  IRA + D       E++K M+        
Sbjct: 1161 CRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDA 1220

Query: 364  STIATLS 370
            STI  ++
Sbjct: 1221 STIGLVT 1227


>gi|346703131|emb|CBX25230.1| hypothetical_protein [Oryza brachyantha]
          Length = 746

 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 83/332 (25%), Positives = 155/332 (46%), Gaps = 16/332 (4%)

Query: 323 GLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVEC-SKALELDL 381
           G +P   TY+ F+  +  +  + + ++V+ +M Q    P D     + V C  K  +L+ 
Sbjct: 285 GFEPDQITYNTFVNGLCQNGHVGHALKVMDVMVQEGHDP-DVFTYNIVVNCLCKNGQLEE 343

Query: 382 AEALLDQ-ISRCTNPK--PFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFS 437
           A+ +L+Q + R   P    F+  + A  + ++ E A+ +  ++  K L PD+ T+ +L +
Sbjct: 344 AKGILNQMVERGCLPDITTFNTLIVALCSGNRLEEALDLARQVTLKGLSPDVYTFNILIN 403

Query: 438 LFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELI 497
               V  P     +F ++ S+        ++  N +  +  S+  L KAL       +L+
Sbjct: 404 ALCKVGDPQLALRLFEEMKSS---GCTPDEVTYNTLIDNLCSLGKLGKAL-------DLL 453

Query: 498 QYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSII 557
           +    +  P  T TYNT++  L +      A E+F QM   GI  NA T+N +ID     
Sbjct: 454 KEMESAGCPRSTVTYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKD 513

Query: 558 RCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLY 617
           +    A+ L+S M+ +G  P  +TY +++      GD  +A ++L  ++  G   DV+ Y
Sbjct: 514 KRIDDANQLISQMISEGLQPNNITYNSILTHYCKQGDIKKAADILQTMTANGFEVDVVTY 573

Query: 618 NTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649
            T++   C+ GR  V   ++  M    ++  P
Sbjct: 574 GTLINGLCKAGRTQVALKLLRGMRIKGMRATP 605



 Score = 87.0 bits (214), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 92/391 (23%), Positives = 169/391 (43%), Gaps = 24/391 (6%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +F+ ++ A  R      A  ++ +M S G+ P   T+   ++  V +  ++  + V   M
Sbjct: 187 TFNTLMKALCRAHQVRTAVLMLEEMSSSGVAPDETTFTTLMQGFVEEGSIKAALRVKARM 246

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPK--PFSAFLAACDTMDKP 411
            +    P   T+  L     K   ++ A   + Q I+    P    ++ F+         
Sbjct: 247 LEMGCSPTKVTVNVLINGYCKLGRVEDALGYIQQEIANGFEPDQITYNTFVNGLCQNGHV 306

Query: 412 ERAIKIFAKMRQKLR-PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
             A+K+   M Q+   PD+ TY ++      VN   + G    Q++ AK    I   M  
Sbjct: 307 GHALKVMDVMVQEGHDPDVFTYNIV------VNCLCKNG----QLEEAK---GILNQMVE 353

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELI----QYFCDSKTPLGTPTYNTVLHSLVEAQESH 526
                   +   L+ AL +   + E +    Q      +P    T+N ++++L +  +  
Sbjct: 354 RGCLPDITTFNTLIVALCSGNRLEEALDLARQVTLKGLSP-DVYTFNILINALCKVGDPQ 412

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMID-CCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
            A+ +F++MK+ G  P+  TYN +ID  CS+ +  K A  L+  M   G    T+TY  +
Sbjct: 413 LALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGKLGK-ALDLLKEMESAGCPRSTVTYNTI 471

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           I  L      +EA  + D + L+GI  + + +NT++   C+  RID    +I QM    +
Sbjct: 472 IDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKRIDDANQLISQMISEGL 531

Query: 646 QPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
           QP+  T + + + Y   G    A + LQ ++
Sbjct: 532 QPNNITYNSILTHYCKQGDIKKAADILQTMT 562



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/241 (20%), Positives = 104/241 (43%), Gaps = 3/241 (1%)

Query: 450 NMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTP 506
           N+  +    K +  +  +M    I+   ++   L+KAL     +R    +++    S   
Sbjct: 158 NVLVEGSKMKLLETVYSEMGERGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSSGVA 217

Query: 507 LGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASAL 566
               T+ T++   VE      A+ +  +M   G  P   T N++I+    +   + A   
Sbjct: 218 PDETTFTTLMQGFVEEGSIKAALRVKARMLEMGCSPTKVTVNVLINGYCKLGRVEDALGY 277

Query: 567 VSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE 626
           +   + +GF P  +TY   +  L   G    AL ++D++  EG   DV  YN ++   C+
Sbjct: 278 IQQEIANGFEPDQITYNTFVNGLCQNGHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCK 337

Query: 627 KGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
            G+++  + I+ QM +    PD +T + +     +      A++  + ++++ L  +V T
Sbjct: 338 NGQLEEAKGILNQMVERGCLPDITTFNTLIVALCSGNRLEEALDLARQVTLKGLSPDVYT 397

Query: 687 L 687
            
Sbjct: 398 F 398



 Score = 68.9 bits (167), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 75/322 (23%), Positives = 141/322 (43%), Gaps = 25/322 (7%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           ++F+ +I+A  +  +  LA +L  +M+S G  P   TY+  I  + S   L   +++LK 
Sbjct: 396 YTFNILINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKE 455

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-----ISRCTNPKPFSAFLAACDTM 408
           M+         T  T+     K + ++ AE + DQ     ISR  N   F+  +      
Sbjct: 456 MESAGCPRSTVTYNTIIDGLCKKMRIEEAEEVFDQMDLQGISR--NAITFNTLIDGLCKD 513

Query: 409 DKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMD 467
            + + A ++ ++M  + L+P+  TY  + + +       ++G++       K+   I   
Sbjct: 514 KRIDDANQLISQMISEGLQPNNITYNSILTHY------CKQGDI-------KKAADILQT 560

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRELIQYF--CDSKTPLGTP-TYNTVLHSLVEAQE 524
           M  N  +   ++   L+  L   G  +  ++       K    TP  YN V+ SL     
Sbjct: 561 MTANGFEVDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGMRATPKAYNPVIQSLFRRNN 620

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMI-DCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
           +  AM +F++M   G PP+A TY I+    C      + A   +  MV  GF P+  ++ 
Sbjct: 621 TRDAMNLFREMTEVGEPPDAFTYKIVFRGLCRGGGSIREAFDFLLEMVDKGFIPEFSSFR 680

Query: 584 ALIKILLDYGDFDEALNLLDLV 605
            L + LL+ G  D  +  ++++
Sbjct: 681 MLAEGLLNLGMDDYFIRAIEII 702



 Score = 57.0 bits (136), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 73/167 (43%)

Query: 509 TPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVS 568
           T  YN +L+ LVE  +      ++ +M   GI P+  T+N ++         ++A  ++ 
Sbjct: 150 TVVYNHLLNVLVEGSKMKLLETVYSEMGERGIKPDVVTFNTLMKALCRAHQVRTAVLMLE 209

Query: 569 MMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
            M   G  P   T+T L++  ++ G    AL +   +   G     +  N ++   C+ G
Sbjct: 210 EMSSSGVAPDETTFTTLMQGFVEEGSIKAALRVKARMLEMGCSPTKVTVNVLINGYCKLG 269

Query: 629 RIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
           R++     I+Q   N  +PD  T +   +G    G    A++ + V+
Sbjct: 270 RVEDALGYIQQEIANGFEPDQITYNTFVNGLCQNGHVGHALKVMDVM 316



 Score = 49.7 bits (117), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 65/319 (20%), Positives = 122/319 (38%), Gaps = 8/319 (2%)

Query: 59  IVDALCRGER-SRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKE 117
           ++ ALC G R   A  L   +     S     F  ++N   +  DP   +  +  M+   
Sbjct: 366 LIVALCSGNRLEEALDLARQVTLKGLSPDVYTFNILINALCKVGDPQLALRLFEEMKSSG 425

Query: 118 IGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHA 177
              +   Y  ++  LC  G L +A +L+  + E  G       YN+ +    K   +  A
Sbjct: 426 CTPDEVTYNTLIDNLCSLGKLGKALDLLKEM-ESAGCPRSTVTYNTIIDGLCKKMRIEEA 484

Query: 178 NLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH-YSLSIFSLRKFVWS 236
               D MD + + +N +T+  L+      K +   +++    I      +  +    +  
Sbjct: 485 EEVFDQMDLQGISRNAITFNTLIDGLCKDKRIDDANQLISQMISEGLQPNNITYNSILTH 544

Query: 237 FTRLRDLKSAYETLQHMVALAMMGKLYINRT-SEGRLRSSRLDIPIPL---NALPVMKVL 292
           + +  D+K A + LQ M A      +    T   G  ++ R  + + L     +  M+  
Sbjct: 545 YCKQGDIKKAADILQTMTANGFEVDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGMRAT 604

Query: 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRG-LRNGMEVL 351
             +++ VI +  R  N+  A  L  +M  +G  P + TY    R +    G +R   + L
Sbjct: 605 PKAYNPVIQSLFRRNNTRDAMNLFREMTEVGEPPDAFTYKIVFRGLCRGGGSIREAFDFL 664

Query: 352 KIMQQNNLKPQDSTIATLS 370
             M      P+ S+   L+
Sbjct: 665 LEMVDKGFIPEFSSFRMLA 683


>gi|298705285|emb|CBJ48975.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 674

 Score =  110 bits (274), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 87/386 (22%), Positives = 176/386 (45%), Gaps = 25/386 (6%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           ++  +I AC +  N   +   + QM+  GL P++  Y   I A       +  +++L+ M
Sbjct: 147 TYGALISACAKRGNWEDSVNYLEQMRQSGLAPNAVIYSTVISACERSDQWQKAVKLLRTM 206

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR--CT-NPKPFSAFLAACDTMDKP 411
           +++ + P   T  T+   C K+ +  LA +LLD++S   C   P  F++ + AC+   + 
Sbjct: 207 RRDGILPVTVTYNTVISACGKSGQWSLAVSLLDEMSDMGCPPGPVTFASAMLACERARQW 266

Query: 412 ERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471
              ++I  +M++         E+    +    A +  G +       + ++  EMD   N
Sbjct: 267 HHVLRIMDQMQED--------EVWVDKYAYTTAIHAAGQLGKWARCVRYLD--EMD--SN 314

Query: 472 NIQHSHISMKNLLKALGAEGM---IRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRA 528
            +    +++   + A   +G      +L++   D        TY +++  L    +  RA
Sbjct: 315 GVAKDVVTVSVAISACADKGQWAQAEKLLEDMLDDGLTPNVITYTSLMVVLRRGGQHERA 374

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
           ++I   M++ G+ PN  TY++ I  C+  + ++ A AL+  M R+G  P  ++Y   I+ 
Sbjct: 375 IKILDLMRSKGVMPNVRTYSVAIAACADAKEWRRALALLKEMEREGVSPNEISYNTAIRA 434

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEF-IIEQMHQNKVQP 647
             D G   EAL+L+D +   G+   V+ Y T +  AC++     +   ++  M + +++P
Sbjct: 435 CGDAGQLSEALDLMDEMESRGVKASVVTYGTAV-AACQRAADWKMALELLAAMRREQIEP 493

Query: 648 DPSTCHFVFSGYVN-CGFHNSAMEAL 672
           +      V+ G +  C     A +AL
Sbjct: 494 N----EIVYGGIIKACCAAGQASKAL 515



 Score = 68.9 bits (167), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 116/558 (20%), Positives = 210/558 (37%), Gaps = 117/558 (20%)

Query: 153 GIYPILPVYNSFLGACAKLHSMVHA-NLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSA 211
            + P +  YN+ + ACA       A  +  ++   R +  N  TY  L+     + N   
Sbjct: 104 AVEPNVVSYNNVITACANAKKQKRAEGIFREMTKERGIRPNVFTYGALISACAKRGN--- 160

Query: 212 VHEIWED---YIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTS 268
               WED   Y++    S  +    ++S      + +   + Q   A+ +          
Sbjct: 161 ----WEDSVNYLEQMRQSGLAPNAVIYSTV----ISACERSDQWQKAVKL---------- 202

Query: 269 EGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSS 328
              LR+ R D  +P+           +++ VI ACG++    LA  L+ +M  +G  P  
Sbjct: 203 ---LRTMRRDGILPVTV---------TYNTVISACGKSGQWSLAVSLLDEMSDMGCPPGP 250

Query: 329 HTYDGFIRAIVSDRGLRNGMEVLKIMQQNN------------------------------ 358
            T   F  A+++    R    VL+IM Q                                
Sbjct: 251 VT---FASAMLACERARQWHHVLRIMDQMQEDEVWVDKYAYTTAIHAAGQLGKWARCVRY 307

Query: 359 LKPQDST-----IATLSVE---CSKALELDLAEALLDQI---SRCTNPKPFSAFLAACDT 407
           L   DS      + T+SV    C+   +   AE LL+ +       N   +++ +     
Sbjct: 308 LDEMDSNGVAKDVVTVSVAISACADKGQWAQAEKLLEDMLDDGLTPNVITYTSLMVVLRR 367

Query: 408 MDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM 466
             + ERAIKI   MR K + P++RTY +  +   +                 +R  A+  
Sbjct: 368 GGQHERAIKILDLMRSKGVMPNVRTYSVAIAACADAK-------------EWRRALALLK 414

Query: 467 DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKT---PLGTPTYNTVLHSLVEAQ 523
           +M R  +  + IS    ++A G  G + E +    + ++        TY T + +   A 
Sbjct: 415 EMEREGVSPNEISYNTAIRACGDAGQLSEALDLMDEMESRGVKASVVTYGTAVAACQRAA 474

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMID-CCSIIRCFKSASALVS-------------M 569
           +   A+E+   M+   I PN   Y  +I  CC+     +++ ALV              +
Sbjct: 475 DWKMALELLAAMRREQIEPNEIVYGGIIKACCA---AGQASKALVDADQIEEAIQLFNKL 531

Query: 570 MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEK-G 628
             R        +YT L+  L     + EA+ L   +    I   V  Y +++ +ACE+ G
Sbjct: 532 QARRNCSVTIHSYTPLVDALTRELRWQEAIMLFQEMEDRKIMPTVQCYTSVV-RACERSG 590

Query: 629 RIDVIEFIIEQMHQNKVQ 646
           + DV   +++ M + +++
Sbjct: 591 QYDVALRLLDDMRKKRMR 608



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 71/154 (46%), Gaps = 8/154 (5%)

Query: 506 PLGTP-------TYNTVLHSLVEAQESHRAMEIFKQM-KTCGIPPNAATYNIMIDCCSII 557
           PL  P       +YN V+ +   A++  RA  IF++M K  GI PN  TY  +I  C+  
Sbjct: 99  PLAVPAVEPNVVSYNNVITACANAKKQKRAEGIFREMTKERGIRPNVFTYGALISACAKR 158

Query: 558 RCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLY 617
             ++ +   +  M + G  P  + Y+ +I        + +A+ LL  +  +GI    + Y
Sbjct: 159 GNWEDSVNYLEQMRQSGLAPNAVIYSTVISACERSDQWQKAVKLLRTMRRDGILPVTVTY 218

Query: 618 NTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
           NT++    + G+  +   ++++M      P P T
Sbjct: 219 NTVISACGKSGQWSLAVSLLDEMSDMGCPPGPVT 252



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 68/140 (48%), Gaps = 3/140 (2%)

Query: 539 GIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRD-GFYPQTMTYTALIKILLDYGDFDE 597
            + PN  +YN +I  C+  +  K A  +   M ++ G  P   TY ALI      G++++
Sbjct: 104 AVEPNVVSYNNVITACANAKKQKRAEGIFREMTKERGIRPNVFTYGALISACAKRGNWED 163

Query: 598 ALNLLDLVSLEGIPHDVLLYNTILKKACEKG-RIDVIEFIIEQMHQNKVQPDPSTCHFVF 656
           ++N L+ +   G+  + ++Y+T++  ACE+  +      ++  M ++ + P   T + V 
Sbjct: 164 SVNYLEQMRQSGLAPNAVIYSTVI-SACERSDQWQKAVKLLRTMRRDGILPVTVTYNTVI 222

Query: 657 SGYVNCGFHNSAMEALQVLS 676
           S     G  + A+  L  +S
Sbjct: 223 SACGKSGQWSLAVSLLDEMS 242



 Score = 48.9 bits (115), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 63/307 (20%), Positives = 116/307 (37%), Gaps = 47/307 (15%)

Query: 369 LSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK--LR 426
           +SV  + A E +  E  L   +   N   ++  + AC    K +RA  IF +M ++  +R
Sbjct: 83  VSVTSTSAAEEEKEEWPLAVPAVEPNVVSYNNVITACANAKKQKRAEGIFREMTKERGIR 142

Query: 427 PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKA 486
           P++ TY  L S      A  + GN    V                          N L+ 
Sbjct: 143 PNVFTYGALIS------ACAKRGNWEDSV--------------------------NYLEQ 170

Query: 487 LGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAAT 546
           +   G+    +              Y+TV+ +   + +  +A+++ + M+  GI P   T
Sbjct: 171 MRQSGLAPNAV-------------IYSTVISACERSDQWQKAVKLLRTMRRDGILPVTVT 217

Query: 547 YNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVS 606
           YN +I  C     +  A +L+  M   G  P  +T+ + +        +   L ++D + 
Sbjct: 218 YNTVISACGKSGQWSLAVSLLDEMSDMGCPPGPVTFASAMLACERARQWHHVLRIMDQMQ 277

Query: 607 LEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHN 666
            + +  D   Y T +  A + G+       +++M  N V  D  T     S   + G   
Sbjct: 278 EDEVWVDKYAYTTAIHAAGQLGKWARCVRYLDEMDSNGVAKDVVTVSVAISACADKGQWA 337

Query: 667 SAMEALQ 673
            A + L+
Sbjct: 338 QAEKLLE 344


>gi|168049795|ref|XP_001777347.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671323|gb|EDQ57877.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 621

 Score =  110 bits (274), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 116/508 (22%), Positives = 205/508 (40%), Gaps = 60/508 (11%)

Query: 156 PILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELL----KLAVWQKNLSA 211
           P +  YNS L A AK      A L  + + +     + V+Y+ L+    +   W+  L  
Sbjct: 7   PNVVTYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWEAALEV 66

Query: 212 VHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGR 271
           V E+     K            +W++  L D     +  Q   AL ++ ++  N      
Sbjct: 67  VAEMQAKGCKPN----------LWTYNTLVDCLG--KAGQFDEALRLLAEMRDN------ 108

Query: 272 LRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTY 331
                         +P ++    +++ +I   G+      A  L  +M+  G  P + TY
Sbjct: 109 ------------GCVPDVR----TYNCLISTLGKAGRLSEAFTLFAEMRERGCVPDTFTY 152

Query: 332 DGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR 391
           +  I  +      +  ME+L+ M+++   P   T ++L     K  E   A  L  ++ R
Sbjct: 153 NSLIYGLGKVGRSQKAMELLEEMERHGCPPDVMTYSSLITGLGKDGETVKAFKLFQEMKR 212

Query: 392 CTNPKP----FSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPY 446
               KP    F+A + A     + + A+++  +M+++ ++P + TY  L + FG V    
Sbjct: 213 -RGRKPDSITFTALMDALGKAGRVDDALELLDEMKERGVKPGVVTYNALIAGFGKVGDLV 271

Query: 447 EEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKT- 505
           E  N+  +             M RN  +   ++   L+  L     + E  Q     +  
Sbjct: 272 EAYNLLDE-------------MKRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKE 318

Query: 506 --PLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSA 563
             P  T TYNT+++ L +A   + A  +F +MK+ G  P+  TY+ +I         +SA
Sbjct: 319 GCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARVESA 378

Query: 564 SALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKK 623
             L   M   G  P   TY ++I +L   G  D+A  L   +  +G+  DV+ YN  L  
Sbjct: 379 CVLFEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNS 438

Query: 624 ACEKGRIDVIEFIIEQMHQNKVQPDPST 651
               GR      I E M ++ + PD +T
Sbjct: 439 LGRGGRFKEARKIFEDMKESGLLPDVAT 466



 Score =  109 bits (272), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 135/639 (21%), Positives = 248/639 (38%), Gaps = 62/639 (9%)

Query: 55  TQMQIVDALCRGERSRASHLLLN-LGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMM 113
           T   +++AL +  +   + LL   L  A  +     +  ++N   R+      +E    M
Sbjct: 11  TYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWEAALEVVAEM 70

Query: 114 EEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHS 173
           + K    N   Y  ++  L K G  +EA  L+  + +  G  P +  YN  +    K   
Sbjct: 71  QAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDN-GCVPDVRTYNCLISTLGKAGR 129

Query: 174 MVHANLCLDLMDSRMVGKNEVTYTELL----KLAVWQKNLSAVHEIWEDYIKHY-SLSIF 228
           +  A      M  R    +  TY  L+    K+   QK +    E+ E+  +H     + 
Sbjct: 130 LSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAM----ELLEEMERHGCPPDVM 185

Query: 229 SLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPV 288
           +    +    +  +   A++  Q M                   R  R    I   AL  
Sbjct: 186 TYSSLITGLGKDGETVKAFKLFQEMK------------------RRGRKPDSITFTAL-- 225

Query: 289 MKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGM 348
                    D +   GR  +   A +L+ +M+  G++P   TY+  I        L    
Sbjct: 226 --------MDALGKAGRVDD---ALELLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAY 274

Query: 349 EVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTM 408
            +L  M++N  KP   T + L     KA +LD A  +L ++ +   P     +    + +
Sbjct: 275 NLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLINGL 334

Query: 409 DKP---ERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAI 464
            K      A ++F +M+ K   PD+ TY  L +  G          +F +++S       
Sbjct: 335 GKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARVESACVLFEEMESV------ 388

Query: 465 EMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVE 521
                   IQ    +  +++  LG  G + +  + F + +    +P   TYN  L+SL  
Sbjct: 389 -------GIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGR 441

Query: 522 AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMT 581
                 A +IF+ MK  G+ P+ ATY+ ++   S  +    A  L+  ++  G    ++ 
Sbjct: 442 GGRFKEARKIFEDMKESGLLPDVATYDALLLGLSKTKEVDDACGLLKELIEQGCAFDSLK 501

Query: 582 YTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMH 641
           +   ++IL  +G+ DEA  LL   + +G+      YN ++    + GR+      +E + 
Sbjct: 502 FDECLEILTSWGNVDEAHELLQFANSKGLWPGASSYNALIDALAKAGRVSEAFNTLEDLK 561

Query: 642 QNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRML 680
           +   +PD  +   + S     G  ++A E L+ +S R L
Sbjct: 562 EQGGKPDIVSYSSLISALGQTGQIDTAFELLEEMSKRGL 600



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 91/434 (20%), Positives = 177/434 (40%), Gaps = 34/434 (7%)

Query: 289 MKVLRW-----SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRG 343
           +K  +W     S+S +I++ GR      A +++ +MQ+ G +P+  TY+  +  +     
Sbjct: 35  LKAAKWTPDVVSYSCLINSLGRAGKWEAALEVVAEMQAKGCKPNLWTYNTLVDCLGKAGQ 94

Query: 344 LRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI-SRCTNPKPFS--A 400
               + +L  M+ N   P   T   L     KA  L  A  L  ++  R   P  F+  +
Sbjct: 95  FDEALRLLAEMRDNGCVPDVRTYNCLISTLGKAGRLSEAFTLFAEMRERGCVPDTFTYNS 154

Query: 401 FLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQ----- 454
            +     + + ++A+++  +M R    PD+ TY  L +  G      +   +F +     
Sbjct: 155 LIYGLGKVGRSQKAMELLEEMERHGCPPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRG 214

Query: 455 --------------VDSAKRIN-AIEM--DMARNNIQHSHISMKNLLKALGAEGMIRELI 497
                         +  A R++ A+E+  +M    ++   ++   L+   G  G + E  
Sbjct: 215 RKPDSITFTALMDALGKAGRVDDALELLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAY 274

Query: 498 QYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCC 554
               + K     P   TY+ ++  L++A +   A ++ K+M+  G PP+  TYN +I+  
Sbjct: 275 NLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLINGL 334

Query: 555 SIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDV 614
                   A  L   M   G  P  +TY+ LI  L      + A  L + +   GI  D+
Sbjct: 335 GKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARVESACVLFEEMESVGIQPDL 394

Query: 615 LLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQV 674
             Y +I+    + G++D  + +  +M    + PD  T +   +     G    A +  + 
Sbjct: 395 FTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARKIFED 454

Query: 675 LSMRMLCEEVSTLE 688
           +    L  +V+T +
Sbjct: 455 MKESGLLPDVATYD 468



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 89/204 (43%), Gaps = 3/204 (1%)

Query: 478 ISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQ 534
           ++  +LL AL   G   E    F + K    TP   +Y+ +++SL  A +   A+E+  +
Sbjct: 10  VTYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWEAALEVVAE 69

Query: 535 MKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGD 594
           M+  G  PN  TYN ++DC      F  A  L++ M  +G  P   TY  LI  L   G 
Sbjct: 70  MQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLGKAGR 129

Query: 595 FDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHF 654
             EA  L   +   G   D   YN+++    + GR      ++E+M ++   PD  T   
Sbjct: 130 LSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVMTYSS 189

Query: 655 VFSGYVNCGFHNSAMEALQVLSMR 678
           + +G    G    A +  Q +  R
Sbjct: 190 LITGLGKDGETVKAFKLFQEMKRR 213



 Score = 70.9 bits (172), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 60/263 (22%), Positives = 107/263 (40%), Gaps = 16/263 (6%)

Query: 427 PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKA 486
           P++ TY  L +         E   +F ++ +AK    +             +S   L+ +
Sbjct: 7   PNVVTYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDV-------------VSYSCLINS 53

Query: 487 LGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPN 543
           LG  G     ++   + +     P   TYNT++  L +A +   A+ +  +M+  G  P+
Sbjct: 54  LGRAGKWEAALEVVAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPD 113

Query: 544 AATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLD 603
             TYN +I           A  L + M   G  P T TY +LI  L   G   +A+ LL+
Sbjct: 114 VRTYNCLISTLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLE 173

Query: 604 LVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
            +   G P DV+ Y++++    + G       + ++M +   +PD  T   +       G
Sbjct: 174 EMERHGCPPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAG 233

Query: 664 FHNSAMEALQVLSMRMLCEEVST 686
             + A+E L  +  R +   V T
Sbjct: 234 RVDDALELLDEMKERGVKPGVVT 256


>gi|15221691|ref|NP_176501.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169915|sp|Q9CAN0.1|PPR99_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63130, mitochondrial; Flags: Precursor
 gi|12323261|gb|AAG51613.1|AC010795_17 unknown protein; 64081-65973 [Arabidopsis thaliana]
 gi|22136016|gb|AAM91590.1| unknown protein [Arabidopsis thaliana]
 gi|23197834|gb|AAN15444.1| unknown protein [Arabidopsis thaliana]
 gi|332195938|gb|AEE34059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 120/546 (21%), Positives = 232/546 (42%), Gaps = 27/546 (4%)

Query: 155 YPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHE 214
           +P +  ++  L A AK++         + M +  +  N  TY+ L+     +  LS    
Sbjct: 78  FPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILINCFCRRSQLSLALA 137

Query: 215 IWEDYIK-HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLY-INRTSEGRL 272
           +    +K  Y   I +L   +  F     +  A   +  MV +      +  N    G  
Sbjct: 138 VLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLF 197

Query: 273 RSSRLDIPIPLNALPVMKVLR---WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSH 329
           R +R    + L    V+K  +    ++  V++   +  +  LA  L+ +M+   ++P   
Sbjct: 198 RHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVV 257

Query: 330 TYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL-SVECSKALELDLAEALLDQ 388
            Y+  I A+ + + + + + +   M    ++P   T  +L    C+     D +  L D 
Sbjct: 258 IYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDM 317

Query: 389 ISRCTNPK--PFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAP 445
           I R  NP    FSA + A     K   A K++ +M ++ + PDI TY  L + F      
Sbjct: 318 IERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFC----- 372

Query: 446 YEEGNMFSQVDSAKRINAIEMDMARN---NIQHSHISMKNLLKALGA-EGMIRELIQYFC 501
                M  ++D AK +   E+ ++++   N+   +  +K   KA    EGM  EL +   
Sbjct: 373 -----MHDRLDEAKHM--FELMISKDCFPNVVTYNTLIKGFCKAKRVDEGM--ELFREMS 423

Query: 502 DSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFK 561
                  T TY T++H   +A+E   A  +FKQM + G+ P+  TY+I++D        +
Sbjct: 424 QRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVE 483

Query: 562 SASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTIL 621
           +A  +   + R    P   TY  +I+ +   G  ++  +L   +SL+G+  +V+ Y T++
Sbjct: 484 TALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMM 543

Query: 622 KKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLC 681
              C KG  +  + +  +M +    PD  T + +   ++  G   ++ E ++ +      
Sbjct: 544 SGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFV 603

Query: 682 EEVSTL 687
            + ST+
Sbjct: 604 GDASTI 609



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 87/405 (21%), Positives = 164/405 (40%), Gaps = 22/405 (5%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A  L+ QM  +G QP S T++  I  +         + ++  M     +P   T   +  
Sbjct: 170 AVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVN 229

Query: 372 ECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDKPERAIKIFAKMRQK-LR 426
              K  ++DLA +LL ++ +    +P    ++  + A         A+ +F +M  K +R
Sbjct: 230 GLCKRGDIDLALSLLKKMEQ-GKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIR 288

Query: 427 PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKA 486
           P++ TY  L     N          + +   A R+ +   DM    I  + ++   L+ A
Sbjct: 289 PNVVTYNSLIRCLCN----------YGRWSDASRLLS---DMIERKINPNVVTFSALIDA 335

Query: 487 LGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPN 543
              EG + E  + + +       P   TY+++++          A  +F+ M +    PN
Sbjct: 336 FVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPN 395

Query: 544 AATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLD 603
             TYN +I      +       L   M + G    T+TYT LI       + D A  +  
Sbjct: 396 VVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFK 455

Query: 604 LVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
            +  +G+  D++ Y+ +L   C  G+++    + E + ++K++PD  T + +  G    G
Sbjct: 456 QMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAG 515

Query: 664 FHNSAMEALQVLSMRMLCEEVSTLEEKRSDFEDLILAEDSEAESR 708
                 +    LS++ +   V T     S F    L E+++A  R
Sbjct: 516 KVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFR 560



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 102/509 (20%), Positives = 205/509 (40%), Gaps = 56/509 (11%)

Query: 54  ATQMQIVDALCRGER-SRASHL---LLNLGHAHHSLGADDFFHILNYCARSPDPLFVMET 109
            T   +++  C G R S A  L   ++ +G+   S   +   H L    R+ + + +++ 
Sbjct: 152 VTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDR 211

Query: 110 WRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACA 169
              M  K    +   Y +++  LCK G ++ A +L+  + E+  I P + +YN+ + A  
Sbjct: 212 ---MVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKM-EQGKIEPGVVIYNTIIDALC 267

Query: 170 KLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYSLSIF 228
              ++  A      MD++ +  N VTY  L++        S    +  D I +  + ++ 
Sbjct: 268 NYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVV 327

Query: 229 SLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPV 288
           +    + +F +   L  A +    M+                  RS   DI         
Sbjct: 328 TFSALIDAFVKEGKLVEAEKLYDEMIK-----------------RSIDPDI--------- 361

Query: 289 MKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGM 348
                +++S +I+          A+ +   M S    P+  TY+  I+     + +  GM
Sbjct: 362 -----FTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGM 416

Query: 349 EVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPK--PFSAFLAAC 405
           E+ + M Q  L     T  TL     +A E D A+ +  Q +S    P    +S  L   
Sbjct: 417 ELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGL 476

Query: 406 DTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAI 464
               K E A+ +F  + R K+ PDI TY ++           +  ++F  +     +  +
Sbjct: 477 CNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLS----LKGV 532

Query: 465 EMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPL-GTPTYNTVLHSLVEAQ 523
           + ++       S    K L +   A+ + RE+ +     + PL  + TYNT++ + +   
Sbjct: 533 KPNVVTYTTMMSGFCRKGLKEE--ADALFREMKE-----EGPLPDSGTYNTLIRAHLRDG 585

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMID 552
           +   + E+ ++M++C    +A+T  ++ +
Sbjct: 586 DKAASAELIREMRSCRFVGDASTIGLVTN 614


>gi|115472657|ref|NP_001059927.1| Os07g0548300 [Oryza sativa Japonica Group]
 gi|28564790|dbj|BAC57720.1| putative crp1 protein [Oryza sativa Japonica Group]
 gi|113611463|dbj|BAF21841.1| Os07g0548300 [Oryza sativa Japonica Group]
          Length = 661

 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 91/361 (25%), Positives = 157/361 (43%), Gaps = 19/361 (5%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLG-LQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           + + +I + G  +    AE L L+    G ++P +  Y+  ++  V    L+N  +VL  
Sbjct: 258 AVTALISSLGSARRVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEQVLDE 317

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMD 409
           M Q  + P ++T + L    ++A   + A  LL ++      KP    FS  LA      
Sbjct: 318 MSQCGVAPDEATYSLLVDAYTRAGRWESARILLKEME-ADGVKPSSYVFSRILAGFRDRG 376

Query: 410 KPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
           + ++A  +  +M    +RPD   Y ++   FG  N      + F ++    R   IE D+
Sbjct: 377 EWQKAFAVLREMHASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRM----REEGIEPDV 432

Query: 469 AR-NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHR 527
              N +  +H       +A+       EL     +S  PLGT TYN +++ L E Q    
Sbjct: 433 VTWNTLIDAHCKGGRHDRAI-------ELFDEMRESNCPLGTTTYNIMINLLGEEQRWEG 485

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
              +  +MK  G+ PN  TY  ++D       FK A   +  M  DG  P    Y AL+ 
Sbjct: 486 VEAMLAEMKEQGLVPNIITYTTLVDVYGRSGRFKEAVDCIEAMKADGLKPSPTMYHALVN 545

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
                G  D ALN++  +  +G+    ++ N+++    E  RI     +++ M +N ++P
Sbjct: 546 AYAQRGLADHALNVVKAMRADGLEASTVVLNSLINAFGEDRRIAEAFSVLQFMKENGLRP 605

Query: 648 D 648
           D
Sbjct: 606 D 606



 Score = 69.3 bits (168), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 89/398 (22%), Positives = 156/398 (39%), Gaps = 54/398 (13%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEV-LKIM 354
           FSD+I A  R +    A +L+   Q++GL P S+     I ++ S R +     + L+  
Sbjct: 224 FSDLISAFARARLPDAALELLASAQAIGLTPRSNAVTALISSLGSARRVAEAEALFLEFF 283

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERA 414
               +KP+      L     K   L  AE +LD++S+C                      
Sbjct: 284 LAGEIKPRTRAYNALLKGYVKIGSLKNAEQVLDEMSQC---------------------- 321

Query: 415 IKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQ 474
                     + PD  TY LL      V+A    G   S      RI   EM+   + ++
Sbjct: 322 ---------GVAPDEATYSLL------VDAYTRAGRWESA-----RILLKEMEA--DGVK 359

Query: 475 HSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPT---YNTVLHSLVEAQESHRAMEI 531
            S      +L      G  ++      +       P    YN ++ +  +      AM+ 
Sbjct: 360 PSSYVFSRILAGFRDRGEWQKAFAVLREMHASGVRPDRHFYNVMIDTFGKYNCLGHAMDA 419

Query: 532 FKQMKTCGIPPNAATYNIMIDC-CSIIRCFKSASALVSMMVRDGFYP-QTMTYTALIKIL 589
           F +M+  GI P+  T+N +ID  C   R  ++      M  R+   P  T TY  +I +L
Sbjct: 420 FDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIELFDEM--RESNCPLGTTTYNIMINLL 477

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649
            +   ++    +L  +  +G+  +++ Y T++      GR       IE M  + ++P P
Sbjct: 478 GEEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVYGRSGRFKEAVDCIEAMKADGLKPSP 537

Query: 650 STCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTL 687
           +  H + + Y   G  + A+  ++  +MR    E ST+
Sbjct: 538 TMYHALVNAYAQRGLADHALNVVK--AMRADGLEASTV 573



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/173 (20%), Positives = 72/173 (41%), Gaps = 1/173 (0%)

Query: 502 DSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFK 561
           +S+     P ++ ++ +   A+    A+E+    +  G+ P +     +I      R   
Sbjct: 214 ESRLEPDAPLFSDLISAFARARLPDAALELLASAQAIGLTPRSNAVTALISSLGSARRVA 273

Query: 562 SASAL-VSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTI 620
            A AL +   +     P+T  Y AL+K  +  G    A  +LD +S  G+  D   Y+ +
Sbjct: 274 EAEALFLEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEQVLDEMSQCGVAPDEATYSLL 333

Query: 621 LKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           +      GR +    ++++M  + V+P       + +G+ + G    A   L+
Sbjct: 334 VDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGEWQKAFAVLR 386


>gi|125600636|gb|EAZ40212.1| hypothetical protein OsJ_24656 [Oryza sativa Japonica Group]
          Length = 661

 Score =  109 bits (273), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 91/361 (25%), Positives = 157/361 (43%), Gaps = 19/361 (5%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLG-LQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           + + +I + G  +    AE L L+    G ++P +  Y+  ++  V    L+N  +VL  
Sbjct: 258 AVTALISSLGSARRVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEQVLDE 317

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMD 409
           M Q  + P ++T + L    ++A   + A  LL ++      KP    FS  LA      
Sbjct: 318 MSQCGVAPDEATYSLLVDAYTRAGRWESARILLKEME-ADGVKPSSYVFSRILAGFRDRG 376

Query: 410 KPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
           + ++A  +  +M    +RPD   Y ++   FG  N      + F ++    R   IE D+
Sbjct: 377 EWQKAFAVLREMHASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRM----REEGIEPDV 432

Query: 469 AR-NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHR 527
              N +  +H       +A+       EL     +S  PLGT TYN +++ L E Q    
Sbjct: 433 VTWNTLIDAHCKGGRHDRAI-------ELFDEMRESNCPLGTTTYNIMINLLGEEQRWEG 485

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
              +  +MK  G+ PN  TY  ++D       FK A   +  M  DG  P    Y AL+ 
Sbjct: 486 VEAMLAEMKEQGLVPNIITYTTLVDVYGRSGRFKEAVDCIEAMKADGLKPSPTMYHALVN 545

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
                G  D ALN++  +  +G+    ++ N+++    E  RI     +++ M +N ++P
Sbjct: 546 AYAQRGLADHALNVVKAMRADGLEASTVVLNSLINAFGEDRRIAEAFSVLQFMKENGLRP 605

Query: 648 D 648
           D
Sbjct: 606 D 606



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 81/381 (21%), Positives = 139/381 (36%), Gaps = 77/381 (20%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEV-LKIM 354
           FSD+I A  R +    A +L+   Q++GL P S+     I ++ S R +     + L+  
Sbjct: 224 FSDLISAFARARLPDAALELLASAQAIGLTPRSNAVTALISSLGSARRVAEAEALFLEFF 283

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERA 414
               +KP+      L     K   L  AE +LD++S+C                      
Sbjct: 284 LAGEIKPRTRAYNALLKGYVKIGSLKNAEQVLDEMSQC---------------------- 321

Query: 415 IKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQ 474
                     + PD  TY LL                   VD+  R    E         
Sbjct: 322 ---------GVAPDEATYSLL-------------------VDAYTRAGRWE--------- 344

Query: 475 HSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQ 534
               S + LLK + A+G+             P  +  ++ +L    +  E  +A  + ++
Sbjct: 345 ----SARILLKEMEADGV------------KP-SSYVFSRILAGFRDRGEWQKAFAVLRE 387

Query: 535 MKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGD 594
           M   G+ P+   YN+MID      C   A      M  +G  P  +T+  LI      G 
Sbjct: 388 MHASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGR 447

Query: 595 FDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHF 654
            D A+ L D +     P     YN ++    E+ R + +E ++ +M +  + P+  T   
Sbjct: 448 HDRAIELFDEMRESNCPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTT 507

Query: 655 VFSGYVNCGFHNSAMEALQVL 675
           +   Y   G    A++ ++ +
Sbjct: 508 LVDVYGRSGRFKEAVDCIEAM 528



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/173 (20%), Positives = 72/173 (41%), Gaps = 1/173 (0%)

Query: 502 DSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFK 561
           +S+     P ++ ++ +   A+    A+E+    +  G+ P +     +I      R   
Sbjct: 214 ESRLEPDAPLFSDLISAFARARLPDAALELLASAQAIGLTPRSNAVTALISSLGSARRVA 273

Query: 562 SASAL-VSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTI 620
            A AL +   +     P+T  Y AL+K  +  G    A  +LD +S  G+  D   Y+ +
Sbjct: 274 EAEALFLEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEQVLDEMSQCGVAPDEATYSLL 333

Query: 621 LKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           +      GR +    ++++M  + V+P       + +G+ + G    A   L+
Sbjct: 334 VDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGEWQKAFAVLR 386


>gi|359497434|ref|XP_003635514.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Vitis vinifera]
          Length = 347

 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 88/352 (25%), Positives = 155/352 (44%), Gaps = 20/352 (5%)

Query: 319 MQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALE 378
           M S+G  P   TY+  I  +     L +  E++  MQ    +P   T   L     K   
Sbjct: 5   MLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGR 64

Query: 379 LDLAEALLDQISR---CTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYEL 434
           L+ A  +LD++S      N   ++  ++A    +K + A+ +F  M  K  +PDI T+  
Sbjct: 65  LEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNS 124

Query: 435 LFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIR 494
           L  +FG             +V+  +    +  DM    +  + I+   L+ A    G ++
Sbjct: 125 L--IFG-----------LCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQ 171

Query: 495 ELIQYFCD---SKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI 551
           E ++   D      PL   TYN ++ +L  A    + + +F+ M + G+ PN  + NI+I
Sbjct: 172 EALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILI 231

Query: 552 DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIP 611
           +        + A   +  M+  G  P  +TY +LI  L   G   EALNL D + +EGI 
Sbjct: 232 NGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGIC 291

Query: 612 HDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
            D + YNT++   C++G  D    ++ +   +   P+  T + + S ++  G
Sbjct: 292 PDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILVSNFIKEG 343



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 65/263 (24%), Positives = 114/263 (43%), Gaps = 16/263 (6%)

Query: 427 PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKA 486
           PDI TY  L  + G     Y        V + + +N +++     N+    I+   L+  
Sbjct: 12  PDIFTYNTL--ILGLCKKGY-------LVSARELMNEMQIKGCEPNV----ITYTILIDR 58

Query: 487 LGAEGMI---RELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPN 543
              EG +   R ++         L    YN ++ +L + ++   A+ +F  M + G  P+
Sbjct: 59  FCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPD 118

Query: 544 AATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLD 603
             T+N +I     +  F+ A  L   M+ +G    T+TY  LI   L  G   EAL L++
Sbjct: 119 IFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVN 178

Query: 604 LVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
            +   G P D + YN ++K  C  G I+    + E M    + P+  +C+ + +G    G
Sbjct: 179 DMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTG 238

Query: 664 FHNSAMEALQVLSMRMLCEEVST 686
               A+E L+ +  R L  ++ T
Sbjct: 239 NIQHALEFLRDMIHRGLTPDIVT 261



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 67/290 (23%), Positives = 120/290 (41%), Gaps = 20/290 (6%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A  ++ +M   GL  ++  Y+  I A+  D  +++ + +   M     KP   T  +L  
Sbjct: 68  ARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIF 127

Query: 372 ECSKALELDLAEALLDQI---SRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRP- 427
              K  + + A  L   +       N   ++  + A       + A+K+   M  +  P 
Sbjct: 128 GLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPL 187

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL 487
           D  TY       G + A    GN+   +       A+  DM    +  ++IS   L+  L
Sbjct: 188 DDITYN------GLIKALCRAGNIEKGL-------ALFEDMMSKGLNPNNISCNILINGL 234

Query: 488 GAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNA 544
              G I+  +++  D      TP   TYN++++ L +   +  A+ +F +++  GI P+A
Sbjct: 235 CRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDA 294

Query: 545 ATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGD 594
            TYN +I        F  A  L+S  V  GF P  +T+  L+   +  GD
Sbjct: 295 ITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILVSNFIKEGD 344



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/265 (21%), Positives = 112/265 (42%), Gaps = 18/265 (6%)

Query: 426 RPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLK 485
            P++ TY +L   F       E  N+  +             M+   +  + +    L+ 
Sbjct: 46  EPNVITYTILIDRFCKEGRLEEARNVLDE-------------MSGKGLALNAVGYNCLIS 92

Query: 486 ALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPP 542
           AL  +  +++ +  F D  +    P   T+N+++  L +  +   A+ +++ M   G+  
Sbjct: 93  ALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIA 152

Query: 543 NAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL 602
           N  TYN +I         + A  LV+ M+  G     +TY  LIK L   G+ ++ L L 
Sbjct: 153 NTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALF 212

Query: 603 DLVSLEGIPHDVLLYNTILKKACEKGRID-VIEFIIEQMHQNKVQPDPSTCHFVFSGYVN 661
           + +  +G+  + +  N ++   C  G I   +EF+ + +H+  + PD  T + + +G   
Sbjct: 213 EDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRG-LTPDIVTYNSLINGLCK 271

Query: 662 CGFHNSAMEALQVLSMRMLCEEVST 686
            G    A+     L +  +C +  T
Sbjct: 272 TGRAQEALNLFDKLQVEGICPDAIT 296



 Score = 44.7 bits (104), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 66/318 (20%), Positives = 120/318 (37%), Gaps = 37/318 (11%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y  ++  LCK GYL  A  L+  + +  G  P +  Y   +    K   +  A   LD M
Sbjct: 17  YNTLILGLCKKGYLVSARELMNEM-QIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEM 75

Query: 185 DSRMVGKNEVTYTELLK-LAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDL 243
             + +  N V Y  L+  L   +K   A++   +   K     IF+    ++   ++   
Sbjct: 76  SGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKF 135

Query: 244 KSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHAC 303
           + A    Q M+              EG + ++                   +++ +IHA 
Sbjct: 136 EEALGLYQDMLL-------------EGVIANT------------------ITYNTLIHAF 164

Query: 304 GRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQD 363
            R      A +L+  M   G      TY+G I+A+     +  G+ + + M    L P +
Sbjct: 165 LRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNN 224

Query: 364 STIATLSVECSKALELDLA-EALLDQISRCTNPK--PFSAFLAACDTMDKPERAIKIFAK 420
            +   L     +   +  A E L D I R   P    +++ +       + + A+ +F K
Sbjct: 225 ISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDK 284

Query: 421 MR-QKLRPDIRTYELLFS 437
           ++ + + PD  TY  L S
Sbjct: 285 LQVEGICPDAITYNTLIS 302


>gi|255540069|ref|XP_002511099.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550214|gb|EEF51701.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1151

 Score =  108 bits (271), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 131/626 (20%), Positives = 248/626 (39%), Gaps = 83/626 (13%)

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
           MEEK    N   Y +++  LC+ G ++EA  L   +  + G+ P   +Y + +    +  
Sbjct: 258 MEEKGCIPNLVTYSVVIAGLCRAGDVDEALELKRSMANK-GLLPDNYIYATLIDGFCRQK 316

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWED-YIKHYSLSIFSLR 231
                   LD M +  +  + V YT L+   V Q ++    ++ E+ + +   L+ F+  
Sbjct: 317 RSTEGKSMLDEMYTMGLKPDHVAYTALINGFVKQSDIGGAFQVKEEMFARKIKLNTFTYY 376

Query: 232 KFVWSFTRLRDLKSAYETLQHMVALAMMGKLYI-NRTSEGRLRSSRLDIPIPLNALPVMK 290
             +    ++ DL+ A +    M  + +   +   N   EG  +   ++    L    +++
Sbjct: 377 ALIHGLCKIGDLEKAEDLFSEMTMMGIKPDIQTYNCLIEGYYKVQNMEKAYEL----LIE 432

Query: 291 VLRWSFSDVIHACGRTQNSGL--------AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDR 342
           + + + +   + CG   N GL        A +L  +M S GL+P+   Y   ++ +V + 
Sbjct: 433 IKKENLTANAYMCGAIVN-GLCHCGDLTRANELFQEMISWGLKPNIVIYTTIVKGLVKEG 491

Query: 343 GLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEA-LLDQISRCTNPKPFS-- 399
                +++L +M+   L P      T+ +   KA +++  ++ L++ I++   P  ++  
Sbjct: 492 RFEEAIKILGVMKDQGLSPDVFCYNTVIIGFCKAGKMEEGKSYLVEMIAKGLKPNVYTYG 551

Query: 400 -----------------AFLAACDTMDKPERAI---------------KIFAKMR----Q 423
                            +F+   D+   P   I               K FAK R    Q
Sbjct: 552 AFIHGYCRAGEMQAAERSFIEMLDSGIAPNDVICTDLIDGYCKDGNTTKAFAKFRCMLDQ 611

Query: 424 KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI--------------------NA 463
            + PD++T+ +L           E   +FS++     +                     A
Sbjct: 612 GVLPDVQTHSVLIHGLSKNGKLQEAMGVFSELLDKGLVPDVFTYTSLISNLCKEGDLKAA 671

Query: 464 IEM--DMARNNIQHSHISMKNLLKALGAEGMI---RELIQYFCDSKTPLGTPTYNTVLHS 518
            E+  DM +  I  + ++   L+  L   G I   REL     +      + TY+T++  
Sbjct: 672 FELHDDMCKKGINPNIVTYNALINGLCKLGEIAKARELFDGIPEKGLARNSVTYSTIIAG 731

Query: 519 LVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQ 578
             ++     A ++F  MK  G+PP++  Y  +ID C      + A +L   MV +G    
Sbjct: 732 YCKSANLTEAFQLFHGMKLVGVPPDSFVYCALIDGCCKAGNTEKALSLFLGMVEEGI-AS 790

Query: 579 TMTYTALIKILLDYGDFDEALNLL-DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFII 637
           T  + ALI      G   EA  L+ D+V     P+ V  Y  +++  C  G I   E + 
Sbjct: 791 TPAFNALIDGFFKLGKLIEAYQLVEDMVDNHITPNHV-TYTILIEYHCTVGNIKEAEQLF 849

Query: 638 EQMHQNKVQPDPSTCHFVFSGYVNCG 663
            +M +  V P+  T   +  GY   G
Sbjct: 850 MEMQKRNVMPNVLTYTSLLHGYNRIG 875



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 156/724 (21%), Positives = 276/724 (38%), Gaps = 128/724 (17%)

Query: 29  NVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGAD 88
           +V   LEL R++    GL  ++   AT   ++D  CR +RS     +L+     +++G  
Sbjct: 282 DVDEALELKRSMANK-GLLPDNYIYAT---LIDGFCRQKRSTEGKSMLD---EMYTMGLK 334

Query: 89  D----FFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNL 144
                +  ++N   +  D     +    M  ++I LN   Y  ++  LCK G LE+A +L
Sbjct: 335 PDHVAYTALINGFVKQSDIGGAFQVKEEMFARKIKLNTFTYYALIHGLCKIGDLEKAEDL 394

Query: 145 IYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAV 204
              +    GI P +  YN  +    K+ +M  A                    ELL + +
Sbjct: 395 FSEM-TMMGIKPDIQTYNCLIEGYYKVQNMEKA-------------------YELL-IEI 433

Query: 205 WQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYI 264
            ++NL+A              + +     V       DL  A E  Q M++  +   + I
Sbjct: 434 KKENLTA--------------NAYMCGAIVNGLCHCGDLTRANELFQEMISWGLKPNIVI 479

Query: 265 NRT-SEGRLRSSRLDIPIPLNALPVMKVLRWS-----FSDVIHACGRTQNSGLAEQLMLQ 318
             T  +G ++  R +  I +  L VMK    S     ++ VI    +       +  +++
Sbjct: 480 YTTIVKGLVKEGRFEEAIKI--LGVMKDQGLSPDVFCYNTVIIGFCKAGKMEEGKSYLVE 537

Query: 319 MQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALE 378
           M + GL+P+ +TY  FI        ++        M  + + P D     L     K   
Sbjct: 538 MIAKGLKPNVYTYGAFIHGYCRAGEMQAAERSFIEMLDSGIAPNDVICTDLIDGYCKDGN 597

Query: 379 LDLAEA----LLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYE 433
              A A    +LDQ     + +  S  +       K + A+ +F+++  K L PD+ TY 
Sbjct: 598 TTKAFAKFRCMLDQ-GVLPDVQTHSVLIHGLSKNGKLQEAMGVFSELLDKGLVPDVFTYT 656

Query: 434 LLFSLF---GNVNAPYE-------EGNMFSQVDSAKRINAI-----------------EM 466
            L S     G++ A +E       +G   + V     IN +                 E 
Sbjct: 657 SLISNLCKEGDLKAAFELHDDMCKKGINPNIVTYNALINGLCKLGEIAKARELFDGIPEK 716

Query: 467 DMARNNIQHSHI-----SMKNLLKALGA-EGM-----------IRELIQYFCDSKTP--- 506
            +ARN++ +S I        NL +A     GM              LI   C +      
Sbjct: 717 GLARNSVTYSTIIAGYCKSANLTEAFQLFHGMKLVGVPPDSFVYCALIDGCCKAGNTEKA 776

Query: 507 ----LG--------TPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCC 554
               LG        TP +N ++    +  +   A ++ + M    I PN  TY I+I+  
Sbjct: 777 LSLFLGMVEEGIASTPAFNALIDGFFKLGKLIEAYQLVEDMVDNHITPNHVTYTILIEYH 836

Query: 555 SIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDV 614
             +   K A  L   M +    P  +TYT+L+      G   E  +L D +   GI  D 
Sbjct: 837 CTVGNIKEAEQLFMEMQKRNVMPNVLTYTSLLHGYNRIGRRSEMFSLFDEMVARGIKPDD 896

Query: 615 LLYNTILKKACEKGR-IDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVN--CGFHNSAMEA 671
           L ++ ++    ++G  I  ++ + + + +       + C  +++  ++  C  HN+  E 
Sbjct: 897 LAWSVMVDAHLKEGNWIKALKLVDDMLSEG-----VNVCKNLYTILIDALCK-HNNLSEV 950

Query: 672 LQVL 675
           L+VL
Sbjct: 951 LKVL 954



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 104/254 (40%), Gaps = 53/254 (20%)

Query: 504 KTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID----------- 552
           K  L T TY  ++H L +  +  +A ++F +M   GI P+  TYN +I+           
Sbjct: 367 KIKLNTFTYYALIHGLCKIGDLEKAEDLFSEMTMMGIKPDIQTYNCLIEGYYKVQNMEKA 426

Query: 553 ------------------CCSIIR----C--FKSASALVSMMVRDGFYPQTMTYTALIKI 588
                             C +I+     C     A+ L   M+  G  P  + YT ++K 
Sbjct: 427 YELLIEIKKENLTANAYMCGAIVNGLCHCGDLTRANELFQEMISWGLKPNIVIYTTIVKG 486

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
           L+  G F+EA+ +L ++  +G+  DV  YNT++   C+ G+++  +  + +M    ++P+
Sbjct: 487 LVKEGRFEEAIKILGVMKDQGLSPDVFCYNTVIIGFCKAGKMEEGKSYLVEMIAKGLKPN 546

Query: 649 PSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDFEDLILAEDSEAESR 708
             T      GY   G     M+A +   + ML              +  I   D      
Sbjct: 547 VYTYGAFIHGYCRAG----EMQAAERSFIEML--------------DSGIAPNDVICTDL 588

Query: 709 ILQFCEDSNENLAF 722
           I  +C+D N   AF
Sbjct: 589 IDGYCKDGNTTKAF 602



 Score = 62.8 bits (151), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 90/375 (24%), Positives = 146/375 (38%), Gaps = 34/375 (9%)

Query: 297 SDVIHACGRTQNSGLAEQLML--QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           S +IH  G ++N  L E + +  ++   GL P   TY   I  +  +  L+   E+   M
Sbjct: 621 SVLIH--GLSKNGKLQEAMGVFSELLDKGLVPDVFTYTSLISNLCKEGDLKAAFELHDDM 678

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAA-CDTMDK 410
            +  + P   T   L     K  E+  A  L D I       N   +S  +A  C + + 
Sbjct: 679 CKKGINPNIVTYNALINGLCKLGEIAKARELFDGIPEKGLARNSVTYSTIIAGYCKSANL 738

Query: 411 PERAIKIFAKMR-QKLRPDIRTY-------------ELLFSLF------GNVNAPYEEGN 450
            E A ++F  M+   + PD   Y             E   SLF      G  + P     
Sbjct: 739 TE-AFQLFHGMKLVGVPPDSFVYCALIDGCCKAGNTEKALSLFLGMVEEGIASTPAFNAL 797

Query: 451 MFSQVDSAKRINAIEM--DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLG 508
           +       K I A ++  DM  N+I  +H++   L++     G I+E  Q F + +    
Sbjct: 798 IDGFFKLGKLIEAYQLVEDMVDNHITPNHVTYTILIEYHCTVGNIKEAEQLFMEMQKRNV 857

Query: 509 TP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASA 565
            P   TY ++LH             +F +M   GI P+   +++M+D       +  A  
Sbjct: 858 MPNVLTYTSLLHGYNRIGRRSEMFSLFDEMVARGIKPDDLAWSVMVDAHLKEGNWIKALK 917

Query: 566 LVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKAC 625
           LV  M+ +G       YT LI  L  + +  E L +LD V  +G    +    T++    
Sbjct: 918 LVDDMLSEGVNVCKNLYTILIDALCKHNNLSEVLKVLDEVEKQGSKLSLATCGTLVCCFH 977

Query: 626 EKGRIDVIEFIIEQM 640
             GR D    ++E M
Sbjct: 978 RAGRTDEALRVLESM 992



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 83/178 (46%), Gaps = 9/178 (5%)

Query: 490 EGMIRELIQYFCDSKTP---LGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAAT 546
           +G + E +  F  +KT    +G    N++   L++        +++K M    I P+  T
Sbjct: 176 KGFLNEAVSVFLGAKTNEFIVGLACCNSLSKDLLKGNRVELFWKVYKGM-LGAIVPDVYT 234

Query: 547 YNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVS 606
           Y  +I+    +   +    ++  M   G  P  +TY+ +I  L   GD DEAL L   ++
Sbjct: 235 YTNLINAYCRVGKVEEGKHVLFDMEEKGCIPNLVTYSVVIAGLCRAGDVDEALELKRSMA 294

Query: 607 LEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGF 664
            +G+  D  +Y T++   C + R    + ++++M+   ++PD    H  ++  +N GF
Sbjct: 295 NKGLLPDNYIYATLIDGFCRQKRSTEGKSMLDEMYTMGLKPD----HVAYTALIN-GF 347



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 59/287 (20%), Positives = 108/287 (37%), Gaps = 25/287 (8%)

Query: 398 FSAFLAACDTMDKP-------ERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGN 450
           F   LA C+++ K        E   K++  M   + PD+ TY  L              N
Sbjct: 194 FIVGLACCNSLSKDLLKGNRVELFWKVYKGMLGAIVPDVYTYTNLI-------------N 240

Query: 451 MFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP 510
            + +V   +    +  DM       + ++   ++  L   G + E ++           P
Sbjct: 241 AYCRVGKVEEGKHVLFDMEEKGCIPNLVTYSVVIAGLCRAGDVDEALELKRSMANKGLLP 300

Query: 511 ---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALV 567
               Y T++      + S     +  +M T G+ P+   Y  +I+          A  + 
Sbjct: 301 DNYIYATLIDGFCRQKRSTEGKSMLDEMYTMGLKPDHVAYTALINGFVKQSDIGGAFQVK 360

Query: 568 SMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEK 627
             M        T TY ALI  L   GD ++A +L   +++ GI  D+  YN +++   + 
Sbjct: 361 EEMFARKIKLNTFTYYALIHGLCKIGDLEKAEDLFSEMTMMGIKPDIQTYNCLIEGYYKV 420

Query: 628 GRID-VIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
             ++   E +IE   +N +  +   C  + +G  +CG    A E  Q
Sbjct: 421 QNMEKAYELLIEIKKEN-LTANAYMCGAIVNGLCHCGDLTRANELFQ 466


>gi|242065566|ref|XP_002454072.1| hypothetical protein SORBIDRAFT_04g024190 [Sorghum bicolor]
 gi|241933903|gb|EES07048.1| hypothetical protein SORBIDRAFT_04g024190 [Sorghum bicolor]
          Length = 820

 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 94/412 (22%), Positives = 174/412 (42%), Gaps = 41/412 (9%)

Query: 277 LDIPIP-------LNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQ-PSS 328
           LDI +P       L+  P+  +   +F  ++    R   + L  +L   M   G   P+ 
Sbjct: 70  LDISLPVVLRLHALSPPPLRPLFDRTFRSLLTHFSRYALTPLMLRLFAHMYHHGPPAPTG 129

Query: 329 HTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ 388
            TY+  IRA+     LR+    L +M ++  +P   T  +L +   +  +LD+A+ L D+
Sbjct: 130 ATYNALIRALCRRADLRHAQRYLSLMVRSGWRPDAFTFNSLILGYCRTQQLDVAQDLFDK 189

Query: 389 I---SRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAP 445
           +       +   ++A +       + + A+++F ++ Q   PD+ T+  L     +    
Sbjct: 190 MPLRGFSQDAVSYAALIEGFCETGRVDEALELFRELEQ---PDMYTHAALVKGLCDARRG 246

Query: 446 YEEG-----------------------NMFSQVDSAKRINAIEMDMARNNIQHSHISMKN 482
            EEG                       +++ +   A+    +  +M  N +    ++   
Sbjct: 247 -EEGLYMLQKMKELGWRPATRAYAALVDLWCREQKAEEAEKMLNEMFDNGLVPCAVTCTA 305

Query: 483 LLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCG 539
           ++ A   EG +   ++ F   K     P   TYN ++       + ++AM +  QM+ CG
Sbjct: 306 VVNAYCREGRMSGAVRVFESMKLKGCEPNVWTYNAMVQGFCNVGKVYKAMALLDQMRECG 365

Query: 540 IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEAL 599
           + P+  TYN++I    I    +SA  L+ +M  +G      TY  LI  L   G  DEA 
Sbjct: 366 VEPDVVTYNLLIRGQCIDGHIESAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEAC 425

Query: 600 NLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
           +L D +   GI  + + +NT++   C+ G+ DV    +E+M      PD  T
Sbjct: 426 SLFDGLEYRGIRPNSVTFNTVINGLCKGGKFDVACTFLEKMVSAGCAPDTYT 477



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 96/489 (19%), Positives = 188/489 (38%), Gaps = 67/489 (13%)

Query: 233 FVWSFTRLRDLKSAYETLQHMVALAMMGKLY-INRTSEGRLRSSRLDIP------IPLNA 285
            + +  R  DL+ A   L  MV        +  N    G  R+ +LD+       +PL  
Sbjct: 135 LIRALCRRADLRHAQRYLSLMVRSGWRPDAFTFNSLILGYCRTQQLDVAQDLFDKMPLRG 194

Query: 286 LPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLR 345
                V   S++ +I     T     A +L  +++    QP  +T+   ++ +   R   
Sbjct: 195 FSQDAV---SYAALIEGFCETGRVDEALELFRELE----QPDMYTHAALVKGLCDARRGE 247

Query: 346 NGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAAC 405
            G+ +L+ M++   +P     A L     +  + + AE +L+++        F   L  C
Sbjct: 248 EGLYMLQKMKELGWRPATRAYAALVDLWCREQKAEEAEKMLNEM--------FDNGLVPC 299

Query: 406 DTM-----------DKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFS 453
                          +   A+++F  M+ K   P++ TY  +   F NV   Y+   +  
Sbjct: 300 AVTCTAVVNAYCREGRMSGAVRVFESMKLKGCEPNVWTYNAMVQGFCNVGKVYKAMALLD 359

Query: 454 Q-------------------------VDSAKRINAIEMDMARNNIQHSHISMKNLLKALG 488
           Q                         ++SA R+  +   M  N +     +   L+ AL 
Sbjct: 360 QMRECGVEPDVVTYNLLIRGQCIDGHIESAFRLLRL---MEGNGLAADQYTYNVLIDALC 416

Query: 489 AEGMIRELIQYFCDSKTPLG----TPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNA 544
             G + E    F D     G    + T+NTV++ L +  +   A    ++M + G  P+ 
Sbjct: 417 KTGKVDEACSLF-DGLEYRGIRPNSVTFNTVINGLCKGGKFDVACTFLEKMVSAGCAPDT 475

Query: 545 ATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDL 604
            TY+  I+     +  +   + +  M++    P T+ YT +I  L    ++  A  +   
Sbjct: 476 YTYSPFIENLCKTKGSREGLSFIDEMLQKDVKPSTVNYTIVIDRLFKERNYGLATRIWGQ 535

Query: 605 VSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGF 664
           +   G   DV+ Y T ++  C +GR+   E ++ +M +  +  D    + +  G+ + G 
Sbjct: 536 MVSLGCSPDVVTYTTSVRAYCNEGRLHEAENVVMEMKKGGIIVDAMAYNTLIDGHTSIGK 595

Query: 665 HNSAMEALQ 673
            + A+  L+
Sbjct: 596 TDHAVTILK 604



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 105/518 (20%), Positives = 189/518 (36%), Gaps = 43/518 (8%)

Query: 156 PILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEI 215
           P    YN+ + A  +   + HA   L LM       +  T+  L+      + L    ++
Sbjct: 127 PTGATYNALIRALCRRADLRHAQRYLSLMVRSGWRPDAFTFNSLILGYCRTQQLDVAQDL 186

Query: 216 WEDY-IKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMV-------ALAMMGKLYINRT 267
           ++   ++ +S    S    +  F     +  A E  + +        A  + G     R 
Sbjct: 187 FDKMPLRGFSQDAVSYAALIEGFCETGRVDEALELFRELEQPDMYTHAALVKGLCDARRG 246

Query: 268 SEGRLRSSRLDIPIPLNALPVMKVLRW-----SFSDVIHACGRTQNSGLAEQLMLQMQSL 322
            EG            L  L  MK L W     +++ ++    R Q +  AE+++ +M   
Sbjct: 247 EEG------------LYMLQKMKELGWRPATRAYAALVDLWCREQKAEEAEKMLNEMFDN 294

Query: 323 GLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLA 382
           GL P + T    + A   +  +   + V + M+    +P   T   +        ++  A
Sbjct: 295 GLVPCAVTCTAVVNAYCREGRMSGAVRVFESMKLKGCEPNVWTYNAMVQGFCNVGKVYKA 354

Query: 383 EALLDQISRCTNPKPFSAF--LAACDTMDKP-ERAIKIFAKMR-QKLRPDIRTYELLFSL 438
            ALLDQ+  C        +  L     +D   E A ++   M    L  D  TY +L   
Sbjct: 355 MALLDQMRECGVEPDVVTYNLLIRGQCIDGHIESAFRLLRLMEGNGLAADQYTYNVLIDA 414

Query: 439 FGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQ 498
                   E  ++F         + +E    R N    +  +  L K  G   +    ++
Sbjct: 415 LCKTGKVDEACSLF---------DGLEYRGIRPNSVTFNTVINGLCKG-GKFDVACTFLE 464

Query: 499 YFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIR 558
               +     T TY+  + +L + + S   +    +M    + P+   Y I+ID     R
Sbjct: 465 KMVSAGCAPDTYTYSPFIENLCKTKGSREGLSFIDEMLQKDVKPSTVNYTIVIDRLFKER 524

Query: 559 CFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYN 618
            +  A+ +   MV  G  P  +TYT  ++   + G   EA N++  +   GI  D + YN
Sbjct: 525 NYGLATRIWGQMVSLGCSPDVVTYTTSVRAYCNEGRLHEAENVVMEMKKGGIIVDAMAYN 584

Query: 619 TILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVF 656
           T++      G+ D    I++ M      P+    HF F
Sbjct: 585 TLIDGHTSIGKTDHAVTILKHMTGVASMPN----HFTF 618



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/208 (20%), Positives = 92/208 (44%), Gaps = 1/208 (0%)

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHR 527
           M         +S   L++     G + E ++ F + + P    T+  ++  L +A+    
Sbjct: 190 MPLRGFSQDAVSYAALIEGFCETGRVDEALELFRELEQP-DMYTHAALVKGLCDARRGEE 248

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
            + + ++MK  G  P    Y  ++D     +  + A  +++ M  +G  P  +T TA++ 
Sbjct: 249 GLYMLQKMKELGWRPATRAYAALVDLWCREQKAEEAEKMLNEMFDNGLVPCAVTCTAVVN 308

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
                G    A+ + + + L+G   +V  YN +++  C  G++     +++QM +  V+P
Sbjct: 309 AYCREGRMSGAVRVFESMKLKGCEPNVWTYNAMVQGFCNVGKVYKAMALLDQMRECGVEP 368

Query: 648 DPSTCHFVFSGYVNCGFHNSAMEALQVL 675
           D  T + +  G    G   SA   L+++
Sbjct: 369 DVVTYNLLIRGQCIDGHIESAFRLLRLM 396



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 85/417 (20%), Positives = 154/417 (36%), Gaps = 61/417 (14%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +F+ VI+   +     +A   + +M S G  P ++TY  FI  +   +G R G+  +  M
Sbjct: 442 TFNTVINGLCKGGKFDVACTFLEKMVSAGCAPDTYTYSPFIENLCKTKGSREGLSFIDEM 501

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERA 414
            Q ++KP  ST+    V                 I R    + +               A
Sbjct: 502 LQKDVKP--STVNYTIV-----------------IDRLFKERNYGL-------------A 529

Query: 415 IKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNI 473
            +I+ +M      PD+ TY      + N    +E  N+  ++   K+   I   MA N +
Sbjct: 530 TRIWGQMVSLGCSPDVVTYTTSVRAYCNEGRLHEAENVVMEM---KKGGIIVDAMAYNTL 586

Query: 474 QHSHISMK------NLLKALGAEGMIRELIQYFCDSKTPL------GTPTYNTVLHSLVE 521
              H S+        +LK +     +     +F   +  L        P   T +   +E
Sbjct: 587 IDGHTSIGKTDHAVTILKHMTGVASMPNHFTFFILLRHLLQRRLAEDVPLKTTSVWKTIE 646

Query: 522 AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMT 581
             +     E+F+ MK   +P +A  Y  +++  S  R     ++LVS M  D        
Sbjct: 647 LAD---VFELFELMKKNSVPSSARAYLAILEGFSEERRLDEVTSLVSHMKEDDLPLNEDI 703

Query: 582 YTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMH 641
           YT+L+        + +A  LL  +   G   +++ Y  +L     +G+ D  + I   + 
Sbjct: 704 YTSLVNCFCKLRMYPDAWALLCSMIGHGFLPNLISYQYLLSGFTAEGQADRAKEIFRGLR 763

Query: 642 QNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL----------SMRMLCEEVSTLE 688
             +   D      +  G +  G  +   + + +L          +  ML EE+ST E
Sbjct: 764 WKEYNTDEIVWKIIIDGLIRQGHPDMCHDMISILEQMKCKPSDETYAMLTEELSTRE 820


>gi|302780401|ref|XP_002971975.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
 gi|300160274|gb|EFJ26892.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
          Length = 755

 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 122/554 (22%), Positives = 206/554 (37%), Gaps = 85/554 (15%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y +++Q LCK G L++A  L+  + E  G  P   +YN  + A  K  +   A   LD  
Sbjct: 62  YAVVIQGLCKSGDLDKACELLEEMRES-GPVPDAAIYNFVIHALCKARNTAKA---LDYF 117

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSL-SIFSLRKFVWSFTRLRDL 243
            S    KN +T+T ++        L      +    K  ++ + ++    +  F ++  +
Sbjct: 118 RSMECEKNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKV 177

Query: 244 KSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHAC 303
             AY  L+ M    +   +                                ++S VIH  
Sbjct: 178 HRAYLLLKEMKESGLAPNVV-------------------------------TYSTVIHGF 206

Query: 304 GRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQD 363
            R      A +L  QM   G  P+  TY+  +  +  +  +    E+L  M++  L+P  
Sbjct: 207 CRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDK 266

Query: 364 STIATLSVECSKALELDLAEALLDQISRCTNPK---PFSAFLAACDTMDKPERAIKIFAK 420
            +  TL     K  ++D+A  + +  S    P     +S  +A      + + A K+F K
Sbjct: 267 FSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEK 326

Query: 421 MRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHIS 479
           MR+    PD+ T+  L              +   + D  +    +   M   N   + I+
Sbjct: 327 MRENSCEPDVVTFTALM-------------DGLCKGDRLQEAQQVLETMEDRNCTPNVIT 373

Query: 480 MKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCG 539
             +L+  L   G +R+                                A E+FK+M   G
Sbjct: 374 YSSLIDGLCKTGQVRD--------------------------------AQEVFKRMIVRG 401

Query: 540 IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEAL 599
           I PN  TYN +I    +     SA  L+  M   G  P  +TY  LI  L   G   EA 
Sbjct: 402 IEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEAN 461

Query: 600 NLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
            L   +  +    DV+ Y+ ++   C+  RID+   + + M +  V PD  T   +  GY
Sbjct: 462 RLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGY 521

Query: 660 VNCGFHNSAMEALQ 673
            N G  + A   L+
Sbjct: 522 CNAGLVDDAERLLE 535



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 126/631 (19%), Positives = 243/631 (38%), Gaps = 59/631 (9%)

Query: 55  TQMQIVDALCR-GERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMM 113
           T   ++  LC+ G+  +A  LL  +  +     A  +  +++   ++ +    ++ +R M
Sbjct: 61  TYAVVIQGLCKSGDLDKACELLEEMRESGPVPDAAIYNFVIHALCKARNTAKALDYFRSM 120

Query: 114 EEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLG-ERYGIYPILPVYNSFLGACAKLH 172
           E ++   N   + +M+  LCK   L EA+   YF   ++ G  P    YN  +    K+H
Sbjct: 121 ECEK---NVITWTIMIDGLCKANRLPEATT--YFAKMKKKGTVPNEWTYNVLINGFCKVH 175

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSL-SIFSLR 231
            +  A L L  M    +  N VTY+ ++     Q  +   ++++   +++  + ++ +  
Sbjct: 176 KVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYN 235

Query: 232 KFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKV 291
             +    R   +  AYE L  M                 R R  + D             
Sbjct: 236 TLLSGLCRNGLMDEAYELLDEM-----------------RERGLQPD------------- 265

Query: 292 LRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVL 351
            ++S+  ++    +T    +A ++     +    P    Y   I  +     L    ++ 
Sbjct: 266 -KFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKAGRLDEACKLF 324

Query: 352 KIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQIS--RCT-NPKPFSAFLAACDTM 408
           + M++N+ +P   T   L     K   L  A+ +L+ +    CT N   +S+ +      
Sbjct: 325 EKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKT 384

Query: 409 DKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMD 467
            +   A ++F +M  + + P++ TY  L   F   N           VDSA  +     +
Sbjct: 385 GQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNG----------VDSALLLME---E 431

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQE 524
           M         I+   L+  L   G   E  + F D K     P   TY+ ++    + + 
Sbjct: 432 MTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLER 491

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
              A  +F  M    + P+  T++ +++          A  L+  MV     P   TYT+
Sbjct: 492 IDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTS 551

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
           L+      G   EA  +L  ++  G   +V+ Y  ++   C  G+  V   ++E+M  N 
Sbjct: 552 LVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYRLLEEMVGNG 611

Query: 645 VQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
           VQP+  T   +  G+   G    A + L+ L
Sbjct: 612 VQPNVITYRSLIGGFCGTGDLEEARKILERL 642



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 83/364 (22%), Positives = 146/364 (40%), Gaps = 25/364 (6%)

Query: 323 GLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLA 382
           G   + +TY+    A++  R +     +LK      + P   T A +     K+ +LD A
Sbjct: 19  GFDHNVYTYNRLFEALLRARRIDETCHILKNGWPPGITPNVFTYAVVIQGLCKSGDLDKA 78

Query: 383 EALLDQISRCTNPKPFSAFL-----AACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFS 437
             LL+++ R + P P +A       A C   +   +A+  F  M  +   ++ T+ ++  
Sbjct: 79  CELLEEM-RESGPVPDAAIYNFVIHALCKARNTA-KALDYFRSM--ECEKNVITWTIMID 134

Query: 438 LFGNVNAPYEEGNMFSQVDSAKRI-NAIEMDMARNNIQHSHISMKN--LLKALGAEGMIR 494
                N   E    F+++     + N    ++  N     H   +   LLK +   G+  
Sbjct: 135 GLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLAP 194

Query: 495 ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCC 554
            ++             TY+TV+H      +   A ++F+QM   G  PN  TYN ++   
Sbjct: 195 NVV-------------TYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGL 241

Query: 555 SIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDV 614
                   A  L+  M   G  P   +Y  L+  L   G  D AL + +  S    P DV
Sbjct: 242 CRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDV 301

Query: 615 LLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQV 674
           + Y+T++   C+ GR+D    + E+M +N  +PD  T   +  G         A + L+ 
Sbjct: 302 VAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLET 361

Query: 675 LSMR 678
           +  R
Sbjct: 362 MEDR 365



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 80/371 (21%), Positives = 145/371 (39%), Gaps = 23/371 (6%)

Query: 323 GLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLA 382
           G+ P+  TY   I+ +     L    E+L+ M+++   P D+ I    +  +     + A
Sbjct: 54  GITPNVFTYAVVIQGLCKSGDLDKACELLEEMRESGPVP-DAAIYNFVIH-ALCKARNTA 111

Query: 383 EALLDQISRCTNPKPFSAFLAACDTMDKPER---AIKIFAKMRQK-LRPDIRTYELLFSL 438
           +AL D        K    +    D + K  R   A   FAKM++K   P+  TY +L + 
Sbjct: 112 KAL-DYFRSMECEKNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLING 170

Query: 439 FGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHI--SMKNLLKALGAEGMIREL 496
           F  V+  +    +  ++         E  +A N + +S +        K   A  + R++
Sbjct: 171 FCKVHKVHRAYLLLKEMK--------ESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQM 222

Query: 497 IQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYN-IMIDCCS 555
           ++  C         TYNT+L  L        A E+  +M+  G+ P+  +Y+ +M   C 
Sbjct: 223 VENGCMPNLV----TYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCK 278

Query: 556 IIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVL 615
             +    A  +          P  + Y+ LI  L   G  DEA  L + +       DV+
Sbjct: 279 TGK-IDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVV 337

Query: 616 LYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
            +  ++   C+  R+   + ++E M      P+  T   +  G    G    A E  + +
Sbjct: 338 TFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRM 397

Query: 676 SMRMLCEEVST 686
            +R +   V T
Sbjct: 398 IVRGIEPNVVT 408



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 87/440 (19%), Positives = 172/440 (39%), Gaps = 26/440 (5%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y  ++  LCK G L+EA  L   + E     P +  + + +    K   +  A   L+ M
Sbjct: 304 YSTLIAGLCKAGRLDEACKLFEKMREN-SCEPDVVTFTALMDGLCKGDRLQEAQQVLETM 362

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYSLSIFSLRKFVWSFTRLRDL 243
           + R    N +TY+ L+        +    E+++  I +    ++ +    +  F     +
Sbjct: 363 EDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGV 422

Query: 244 KSAYETLQHMVALAMMGKLYI-NRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVI-H 301
            SA   ++ M A   +  +   N   +G  ++ R   P        MK  ++   DVI +
Sbjct: 423 DSALLLMEEMTATGCLPDIITYNTLIDGLCKTGR--APEANRLFGDMKA-KFCNPDVITY 479

Query: 302 AC-----GRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQ 356
           +C      + +   +A  L   M    + P   T+   +    +   + +   +L+ M  
Sbjct: 480 SCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVA 539

Query: 357 NNLKPQDSTIATLSVECSKALELDLAEALLDQISR--C-TNPKPFSAFLAACDTMDKPER 413
           ++  P   T  +L     K   +  A  +L ++++  C  N   ++A + A     KP  
Sbjct: 540 SDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTV 599

Query: 414 AIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNN 472
           A ++  +M    ++P++ TY  L   F       E   +  +++  +   A   DM    
Sbjct: 600 AYRLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKILERLERDENCKA---DM---- 652

Query: 473 IQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIF 532
              ++  M + L   G      EL++    S TP     Y  ++  L + +E  +AME+ 
Sbjct: 653 --FAYRVMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQGKELGKAMEVL 710

Query: 533 KQMK-TCGIPPNAATYNIMI 551
           ++M  +    PNA  Y  +I
Sbjct: 711 EEMTLSRKSRPNAEAYEAVI 730



 Score = 44.3 bits (103), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 79/440 (17%), Positives = 170/440 (38%), Gaps = 24/440 (5%)

Query: 31  ANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGER-SRASHLLLNLGHAHHSLGADD 89
           A +L+ +  L   M  N       T   ++D LC+G+R   A  +L  +   + +     
Sbjct: 314 AGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVIT 373

Query: 90  FFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLG 149
           +  +++   ++       E ++ M  + I  N   Y  ++   C    ++ A  L+  + 
Sbjct: 374 YSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEM- 432

Query: 150 ERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNL 209
              G  P +  YN+ +    K      AN     M ++    + +TY+ L+      + +
Sbjct: 433 TATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERI 492

Query: 210 SAVHEIWEDYIKHYSL-SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRT- 267
                +++D +K   L  + +    V  +     +  A   L+ MVA      +Y   + 
Sbjct: 493 DMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSL 552

Query: 268 SEGRLRSSRLDIPIPLNALPVMKVLR--------WSFSDVIHACGRTQNSGLAEQLMLQM 319
            +G  +  R+     + A  V+K +          +++ +I A  R     +A +L+ +M
Sbjct: 553 VDGFCKVGRM-----VEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYRLLEEM 607

Query: 320 QSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQN-NLKPQDSTIATLSVECSKALE 378
              G+QP+  TY   I        L    ++L+ ++++ N K        +     +   
Sbjct: 608 VGNGVQPNVITYRSLIGGFCGTGDLEEARKILERLERDENCKADMFAYRVMMDGLCRTGR 667

Query: 379 LDLAEALLDQISRCTNPKPFSAFLAACDTMDKPE---RAIKIFAKM--RQKLRPDIRTYE 433
           +  A  LL+ I +   P     ++A    + + +   +A+++  +M   +K RP+   YE
Sbjct: 668 MSAALELLEAIKQSGTPPRHDIYVALIRGLCQGKELGKAMEVLEEMTLSRKSRPNAEAYE 727

Query: 434 LLFSLFGNVNAPYEEGNMFS 453
            +          +EE N  +
Sbjct: 728 AVIQELAR-EGRHEEANALA 746


>gi|359497112|ref|XP_003635427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Vitis vinifera]
          Length = 740

 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 88/352 (25%), Positives = 155/352 (44%), Gaps = 20/352 (5%)

Query: 319 MQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALE 378
           M S+G  P   TY+  I  +     L +  E++  MQ    +P   T   L     K   
Sbjct: 398 MLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGR 457

Query: 379 LDLAEALLDQISR---CTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYEL 434
           L+ A  +LD++S      N   ++  ++A    +K + A+ +F  M  K  +PDI T+  
Sbjct: 458 LEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNS 517

Query: 435 LFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIR 494
           L  +FG             +V+  +    +  DM    +  + I+   L+ A    G ++
Sbjct: 518 L--IFG-----------LCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQ 564

Query: 495 ELIQYFCD---SKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI 551
           E ++   D      PL   TYN ++ +L  A    + + +F+ M + G+ PN  + NI+I
Sbjct: 565 EALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILI 624

Query: 552 DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIP 611
           +        + A   +  M+  G  P  +TY +LI  L   G   EALNL D + +EGI 
Sbjct: 625 NGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGIC 684

Query: 612 HDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
            D + YNT++   C++G  D    ++ +   +   P+  T + + S ++  G
Sbjct: 685 PDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILVSNFIKEG 736



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 86/400 (21%), Positives = 164/400 (41%), Gaps = 27/400 (6%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           +  +IHA  +        +L+ +M  +G  P  +T++  I  +     +    +++  M 
Sbjct: 273 YQTLIHALSKVGRVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRML 332

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDKP 411
                P   T   L     +  ++D A  LL+++     P P    F+  +    +  + 
Sbjct: 333 LRGFTPNSFTYGVLMHGLCRMGKVDEARMLLNKV-----PNPNVVLFNTLINGYVSRGRL 387

Query: 412 ERAIKIF--AKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
           + A  +   + +     PDI TY  L  + G     Y        V + + +N +++   
Sbjct: 388 DEAKAVMHESMLSVGCGPDIFTYNTL--ILGLCKKGY-------LVSARELMNEMQIKGC 438

Query: 470 RNNIQHSHISMKNLLKALGAEGMI---RELIQYFCDSKTPLGTPTYNTVLHSLVEAQESH 526
             N+    I+   L+     EG +   R ++         L    YN ++ +L + ++  
Sbjct: 439 EPNV----ITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQ 494

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
            A+ +F  M + G  P+  T+N +I     +  F+ A  L   M+ +G    T+TY  LI
Sbjct: 495 DALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLI 554

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
              L  G   EAL L++ +   G P D + YN ++K  C  G I+    + E M    + 
Sbjct: 555 HAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLN 614

Query: 647 PDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           P+  +C+ + +G    G    A+E L+ +  R L  ++ T
Sbjct: 615 PNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVT 654



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 67/290 (23%), Positives = 120/290 (41%), Gaps = 20/290 (6%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A  ++ +M   GL  ++  Y+  I A+  D  +++ + +   M     KP   T  +L  
Sbjct: 461 ARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIF 520

Query: 372 ECSKALELDLAEALLDQI---SRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRP- 427
              K  + + A  L   +       N   ++  + A       + A+K+   M  +  P 
Sbjct: 521 GLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPL 580

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL 487
           D  TY       G + A    GN+   +       A+  DM    +  ++IS   L+  L
Sbjct: 581 DDITYN------GLIKALCRAGNIEKGL-------ALFEDMMSKGLNPNNISCNILINGL 627

Query: 488 GAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNA 544
              G I+  +++  D      TP   TYN++++ L +   +  A+ +F +++  GI P+A
Sbjct: 628 CRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDA 687

Query: 545 ATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGD 594
            TYN +I        F  A  L+S  V  GF P  +T+  L+   +  GD
Sbjct: 688 ITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILVSNFIKEGD 737



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 87/403 (21%), Positives = 173/403 (42%), Gaps = 31/403 (7%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNG-MEVLKI 353
           +F+D IH   +      A +L+ +M   G  P+S TY   +  +      R G ++  ++
Sbjct: 307 TFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLC-----RMGKVDEARM 361

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ--ISRCTNPKPFS---AFLAACDTM 408
           +      P      TL         LD A+A++ +  +S    P  F+     L  C   
Sbjct: 362 LLNKVPNPNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKK- 420

Query: 409 DKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMD 467
                A ++  +M+ K   P++ TY +L   F       +EG    +++ A+  N ++ +
Sbjct: 421 GYLVSARELMNEMQIKGCEPNVITYTILIDRF------CKEG----RLEEAR--NVLD-E 467

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQE 524
           M+   +  + +    L+ AL  +  +++ +  F D  +    P   T+N+++  L +  +
Sbjct: 468 MSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNK 527

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
              A+ +++ M   G+  N  TYN +I         + A  LV+ M+  G     +TY  
Sbjct: 528 FEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNG 587

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID-VIEFIIEQMHQN 643
           LIK L   G+ ++ L L + +  +G+  + +  N ++   C  G I   +EF+ + +H+ 
Sbjct: 588 LIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRG 647

Query: 644 KVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
            + PD  T + + +G    G    A+     L +  +C +  T
Sbjct: 648 -LTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAIT 689



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 81/206 (39%), Gaps = 44/206 (21%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC----------------- 553
           T+  V+ +L    E   A  + K M   G  PNA  Y  +I                   
Sbjct: 237 TFGVVMKALCLVNEVDSACALLKDMTRHGCVPNAIVYQTLIHALSKVGRVNEVLKLLEEM 296

Query: 554 -------------------CSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGD 594
                              C ++R    A+ LV  M+  GF P + TY  L+  L   G 
Sbjct: 297 LLMGCIPDVNTFNDAIHGLCKMLR-IHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGK 355

Query: 595 FDEALNLLDLVSLEGIPH-DVLLYNTILKKACEKGRIDVIEFII-EQMHQNKVQPDPSTC 652
            DEA  LL+ V     P+ +V+L+NT++     +GR+D  + ++ E M      PD  T 
Sbjct: 356 VDEARMLLNKV-----PNPNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTY 410

Query: 653 HFVFSGYVNCGFHNSAMEALQVLSMR 678
           + +  G    G+  SA E +  + ++
Sbjct: 411 NTLILGLCKKGYLVSARELMNEMQIK 436



 Score = 42.7 bits (99), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 66/318 (20%), Positives = 120/318 (37%), Gaps = 37/318 (11%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y  ++  LCK GYL  A  L+  + +  G  P +  Y   +    K   +  A   LD M
Sbjct: 410 YNTLILGLCKKGYLVSARELMNEM-QIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEM 468

Query: 185 DSRMVGKNEVTYTELLK-LAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDL 243
             + +  N V Y  L+  L   +K   A++   +   K     IF+    ++   ++   
Sbjct: 469 SGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKF 528

Query: 244 KSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHAC 303
           + A    Q M+              EG + ++                   +++ +IHA 
Sbjct: 529 EEALGLYQDMLL-------------EGVIANT------------------ITYNTLIHAF 557

Query: 304 GRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQD 363
            R      A +L+  M   G      TY+G I+A+     +  G+ + + M    L P +
Sbjct: 558 LRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNN 617

Query: 364 STIATLSVECSKALELDLA-EALLDQISRCTNPK--PFSAFLAACDTMDKPERAIKIFAK 420
            +   L     +   +  A E L D I R   P    +++ +       + + A+ +F K
Sbjct: 618 ISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDK 677

Query: 421 MR-QKLRPDIRTYELLFS 437
           ++ + + PD  TY  L S
Sbjct: 678 LQVEGICPDAITYNTLIS 695


>gi|147798083|emb|CAN67256.1| hypothetical protein VITISV_039434 [Vitis vinifera]
          Length = 722

 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 88/352 (25%), Positives = 155/352 (44%), Gaps = 20/352 (5%)

Query: 319 MQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALE 378
           M S+G  P   TY+  I  +     L +  E++  MQ    +P   T   L     K   
Sbjct: 380 MLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGR 439

Query: 379 LDLAEALLDQISR---CTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYEL 434
           L+ A  +LD++S      N   ++  ++A    +K + A+ +F  M  K  +PDI T+  
Sbjct: 440 LEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNS 499

Query: 435 LFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIR 494
           L  +FG             +V+  +    +  DM    +  + I+   L+ A    G ++
Sbjct: 500 L--IFG-----------LCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQ 546

Query: 495 ELIQYFCD---SKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI 551
           E ++   D      PL   TYN ++ +L  A    + + +F+ M + G+ PN  + NI+I
Sbjct: 547 EALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILI 606

Query: 552 DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIP 611
           +        + A   +  M+  G  P  +TY +LI  L   G   EALNL D + +EGI 
Sbjct: 607 NGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGIC 666

Query: 612 HDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
            D + YNT++   C++G  D    ++ +   +   P+  T + + S ++  G
Sbjct: 667 PDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILVSNFIKEG 718



 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 86/400 (21%), Positives = 164/400 (41%), Gaps = 27/400 (6%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           +  +IHA  +        +L+ +M  +G  P  +T++  I  +     +    +++  M 
Sbjct: 255 YQTLIHALXKVGRVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRML 314

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDKP 411
                P   T   L     +  ++D A  LL+++     P P    F+  +    +  + 
Sbjct: 315 LRGFTPNSFTYGVLMHGLCRMGKVDEARMLLNKV-----PNPNVVLFNTLINGYVSRGRL 369

Query: 412 ERAIKIF--AKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
           + A  +   + +     PDI TY  L  + G     Y        V + + +N +++   
Sbjct: 370 DEAKAVMHESMLSVGCGPDIFTYNTL--ILGLCKKGY-------LVSARELMNEMQIKGC 420

Query: 470 RNNIQHSHISMKNLLKALGAEGMI---RELIQYFCDSKTPLGTPTYNTVLHSLVEAQESH 526
             N+    I+   L+     EG +   R ++         L    YN ++ +L + ++  
Sbjct: 421 EPNV----ITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQ 476

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
            A+ +F  M + G  P+  T+N +I     +  F+ A  L   M+ +G    T+TY  LI
Sbjct: 477 DALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLI 536

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
              L  G   EAL L++ +   G P D + YN ++K  C  G I+    + E M    + 
Sbjct: 537 HAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLN 596

Query: 647 PDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           P+  +C+ + +G    G    A+E L+ +  R L  ++ T
Sbjct: 597 PNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVT 636



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 67/290 (23%), Positives = 121/290 (41%), Gaps = 20/290 (6%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A  ++ +M   GL  ++  Y+  I A+  D  +++ + +   M     KP   T  +L  
Sbjct: 443 ARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIF 502

Query: 372 ECSKALELDLAEALLDQI---SRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRP- 427
              K  + + A  L   +       N   ++  + A       + A+K+   M  +  P 
Sbjct: 503 GLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPL 562

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL 487
           D  TY       G + A    GN+       ++  A+  DM    +  ++IS   L+  L
Sbjct: 563 DDITYN------GLIKALCRAGNI-------EKGLALFEDMMSKGLNPNNISCNILINGL 609

Query: 488 GAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNA 544
              G I+  +++  D      TP   TYN++++ L +   +  A+ +F +++  GI P+A
Sbjct: 610 CRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDA 669

Query: 545 ATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGD 594
            TYN +I        F  A  L+S  V  GF P  +T+  L+   +  GD
Sbjct: 670 ITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILVSNFIKEGD 719



 Score = 64.3 bits (155), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 87/403 (21%), Positives = 173/403 (42%), Gaps = 31/403 (7%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNG-MEVLKI 353
           +F+D IH   +      A +L+ +M   G  P+S TY   +  +      R G ++  ++
Sbjct: 289 TFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLC-----RMGKVDEARM 343

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ--ISRCTNPKPFS---AFLAACDTM 408
           +      P      TL         LD A+A++ +  +S    P  F+     L  C   
Sbjct: 344 LLNKVPNPNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKK- 402

Query: 409 DKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMD 467
                A ++  +M+ K   P++ TY +L   F       +EG    +++ A+  N ++ +
Sbjct: 403 GYLVSARELMNEMQIKGCEPNVITYTILIDRF------CKEG----RLEEAR--NVLD-E 449

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQE 524
           M+   +  + +    L+ AL  +  +++ +  F D  +    P   T+N+++  L +  +
Sbjct: 450 MSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNK 509

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
              A+ +++ M   G+  N  TYN +I         + A  LV+ M+  G     +TY  
Sbjct: 510 FEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNG 569

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID-VIEFIIEQMHQN 643
           LIK L   G+ ++ L L + +  +G+  + +  N ++   C  G I   +EF+ + +H+ 
Sbjct: 570 LIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRG 629

Query: 644 KVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
            + PD  T + + +G    G    A+     L +  +C +  T
Sbjct: 630 -LTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAIT 671



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 81/206 (39%), Gaps = 44/206 (21%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC----------------- 553
           T+  V+ +L    E   A  + K M   G  PNA  Y  +I                   
Sbjct: 219 TFGVVMKALCLVNEVDSACALLKDMTRHGCVPNAIVYQTLIHALXKVGRVNEVLKLLEEM 278

Query: 554 -------------------CSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGD 594
                              C ++R    A+ LV  M+  GF P + TY  L+  L   G 
Sbjct: 279 LLMGCIPDVNTFNDAIHGLCKMLR-IHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGK 337

Query: 595 FDEALNLLDLVSLEGIPH-DVLLYNTILKKACEKGRIDVIEFII-EQMHQNKVQPDPSTC 652
            DEA  LL+ V     P+ +V+L+NT++     +GR+D  + ++ E M      PD  T 
Sbjct: 338 VDEARMLLNKV-----PNPNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTY 392

Query: 653 HFVFSGYVNCGFHNSAMEALQVLSMR 678
           + +  G    G+  SA E +  + ++
Sbjct: 393 NTLILGLCKKGYLVSARELMNEMQIK 418



 Score = 43.1 bits (100), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 66/318 (20%), Positives = 120/318 (37%), Gaps = 37/318 (11%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y  ++  LCK GYL  A  L+  + +  G  P +  Y   +    K   +  A   LD M
Sbjct: 392 YNTLILGLCKKGYLVSARELMNEM-QIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEM 450

Query: 185 DSRMVGKNEVTYTELLK-LAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDL 243
             + +  N V Y  L+  L   +K   A++   +   K     IF+    ++   ++   
Sbjct: 451 SGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKF 510

Query: 244 KSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHAC 303
           + A    Q M+              EG + ++                   +++ +IHA 
Sbjct: 511 EEALGLYQDMLL-------------EGVIANT------------------ITYNTLIHAF 539

Query: 304 GRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQD 363
            R      A +L+  M   G      TY+G I+A+     +  G+ + + M    L P +
Sbjct: 540 LRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNN 599

Query: 364 STIATLSVECSKALELDLA-EALLDQISRCTNPK--PFSAFLAACDTMDKPERAIKIFAK 420
            +   L     +   +  A E L D I R   P    +++ +       + + A+ +F K
Sbjct: 600 ISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDK 659

Query: 421 MR-QKLRPDIRTYELLFS 437
           ++ + + PD  TY  L S
Sbjct: 660 LQVEGICPDAITYNTLIS 677


>gi|147789724|emb|CAN67401.1| hypothetical protein VITISV_025967 [Vitis vinifera]
          Length = 592

 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 115/491 (23%), Positives = 196/491 (39%), Gaps = 55/491 (11%)

Query: 197 TELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVAL 256
           T+L+K     KN+     + E    H    +F+    +  F ++  +++A + L  M A 
Sbjct: 117 TKLIKGFFNFKNIEKASRVMEILESHTEPDVFAYNAVISGFCKVNQIEAATQVLNRMKAR 176

Query: 257 AMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLM 316
             +  +       G L                              C R +  GLA  ++
Sbjct: 177 GFLPDIVTYNIMIGSL------------------------------CNR-RKLGLALTVL 205

Query: 317 LQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTI-ATLSVECSK 375
            Q+      P+  TY   I A + + G+   M++L+ M    L P   T  A +   C +
Sbjct: 206 DQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKE 265

Query: 376 ALELDLAEALLDQISRCTNPK--PFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTY 432
            +    AE +    S+   P    ++  L A     K +   K+ A+M  +   P+  TY
Sbjct: 266 GMVERAAELITSLTSKGCEPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTY 325

Query: 433 ELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGM 492
            +L S              F ++D A  +  +   M    +     S   L+ AL  EG 
Sbjct: 326 SILISSLCR----------FGRIDEAISVLKV---MIEKELTPDTYSYDPLISALCKEGR 372

Query: 493 IR---ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNI 549
           +     ++ Y   +        YNT+L +L +   +++A+EIF +++  G PPN ++YN 
Sbjct: 373 LDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNT 432

Query: 550 MIDCCSIIRCFKSASAL--VSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSL 607
           MI   ++  C   + AL  V  M+  G  P  +TY +LI  L   G  +EA+ LLD +  
Sbjct: 433 MIS--ALWSCGDRSRALGMVPAMISKGIDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQ 490

Query: 608 EGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNS 667
            G    V+ YN +L   C+  RID    +  +M +   +P+ +T   +  G    G+   
Sbjct: 491 SGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNETTYILLIEGIGFAGWRTE 550

Query: 668 AMEALQVLSMR 678
           AME    L  R
Sbjct: 551 AMELANSLFSR 561


>gi|225453062|ref|XP_002266822.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Vitis vinifera]
          Length = 582

 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 115/491 (23%), Positives = 197/491 (40%), Gaps = 55/491 (11%)

Query: 197 TELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVAL 256
           T+L+K     KN+     + E    H    +F+    +  F ++  +++A + L  M A 
Sbjct: 107 TKLIKGFFNFKNIEKASRVMEILESHTEPDVFAYNAVISGFCKVNRIEAATQVLNRMKAR 166

Query: 257 AMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLM 316
             +  +       G L                              C R +  GLA +++
Sbjct: 167 GFLPDIVTYNIMIGSL------------------------------CNR-RKLGLALKVL 195

Query: 317 LQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTI-ATLSVECSK 375
            Q+      P+  TY   I A + + G+   M++L+ M    L P   T  A +   C +
Sbjct: 196 DQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKE 255

Query: 376 ALELDLAEALLDQISRCTNPK--PFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTY 432
            +    AE +    S+   P    ++  L A     K +   K+ A+M  +   P+  TY
Sbjct: 256 GMVERAAELITSLTSKGCKPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTY 315

Query: 433 ELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGM 492
            +L S              F ++D A  +  +   M    +     S   L+ AL  EG 
Sbjct: 316 SILISSLCR----------FGRIDEAISVLKV---MIEKELTPDTYSYDPLISALCKEGR 362

Query: 493 IR---ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNI 549
           +     ++ Y   +        YNT+L +L +   +++A+EIF +++  G PPN ++YN 
Sbjct: 363 LDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNT 422

Query: 550 MIDCCSIIRCFKSASAL--VSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSL 607
           MI   ++  C   + AL  V  M+  G  P  +TY +LI  L   G  +EA+ LLD +  
Sbjct: 423 MIS--ALWSCGDRSRALGMVPAMISKGVDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQ 480

Query: 608 EGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNS 667
            G    V+ YN +L   C+  RID    +  +M +   +P+ +T   +  G    G+   
Sbjct: 481 SGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNETTYILLIEGIGFAGWRTE 540

Query: 668 AMEALQVLSMR 678
           AME    L  R
Sbjct: 541 AMELANSLFSR 551


>gi|298711148|emb|CBJ32373.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 962

 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 83/360 (23%), Positives = 162/360 (45%), Gaps = 23/360 (6%)

Query: 314 QLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ-QNNLKPQDSTIATLSVE 372
           +L   +   GL+P+S TY   IRA           ++L  MQ ++ ++P     + +   
Sbjct: 398 ELFETLAKSGLKPNSITYVSAIRAYGDKGDWERAEQMLVGMQKEHGVEPNRFCYSAVVKA 457

Query: 373 CSKALELDLAEALLDQISRC---TNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDI 429
            +   +   A   LD++  C    +P  ++A + AC+   + E+A+   +K+  + +P +
Sbjct: 458 LANGGQWKRALETLDEMRECGLSADPVVYTAAIGACEKFGQWEKALDTLSKLVSE-KPPM 516

Query: 430 RTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIE---MDMARNNIQHSHISMKNLLKA 486
           R      SL    NA        S +  AK++  I+     M  + ++    +   +++A
Sbjct: 517 R------SLMWGYNAA------ISALGKAKQMEGIKDLVATMKASGLKPDEYTYAAMMRA 564

Query: 487 LGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPN 543
            G +G   E      + +     P    YNT++ S+++ ++  +A +I  +M+  G+PP+
Sbjct: 565 SGIDGSWEESWSMLVEMEQAGVRPNRVVYNTLIASVLKGEQMEKADDILNRMREGGVPPD 624

Query: 544 AATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLD 603
             TY  ++  C     ++ A AL+S M   G  P + T TA++K+  D G+ + AL L +
Sbjct: 625 VTTYTTIMSGCKRESDWRRAEALLSEMESFGVKPNSRTLTAVLKVYGDAGEVERALALFE 684

Query: 604 LVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
                G+  DV+ +NT++    +K   + +  +  +M    V+PD  T   V       G
Sbjct: 685 QYDASGMVMDVICFNTLMGPVLKKDDPETVLELFSRMESRGVEPDSLTMSLVLRAAEQAG 744



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 81/453 (17%), Positives = 173/453 (38%), Gaps = 61/453 (13%)

Query: 150 ERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDS---RMVGKNEVTYTELLKLAVWQ 206
           +R G+ P +  Y S + A +    +  A++ L+L ++     +  N +TY   ++    +
Sbjct: 367 KREGVEPDIITYGSLMSALSP-RGLAGADIVLELFETLAKSGLKPNSITYVSAIRAYGDK 425

Query: 207 KNLSAVHEIWEDYIKHYSL--SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYI 264
            +     ++     K + +  + F     V +       K A ETL  M    +     +
Sbjct: 426 GDWERAEQMLVGMQKEHGVEPNRFCYSAVVKALANGGQWKRALETLDEMRECGLSADPVV 485

Query: 265 NRTSEGRLRS-----SRLDIPIPL-NALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQ 318
              + G           LD    L +  P M+ L W ++  I A G+ +     + L+  
Sbjct: 486 YTAAIGACEKFGQWEKALDTLSKLVSEKPPMRSLMWGYNAAISALGKAKQMEGIKDLVAT 545

Query: 319 MQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALE 378
           M++ GL+P  +TY   +RA   D        +L  M+Q  ++P      TL     K  +
Sbjct: 546 MKASGLKPDEYTYAAMMRASGIDGSWEESWSMLVEMEQAGVRPNRVVYNTLIASVLKGEQ 605

Query: 379 LDLAEALLDQISRCTNP---KPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYEL 434
           ++ A+ +L+++     P     ++  ++ C       RA  + ++M    ++P+ RT   
Sbjct: 606 MEKADDILNRMREGGVPPDVTTYTTIMSGCKRESDWRRAEALLSEMESFGVKPNSRTLTA 665

Query: 435 LFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIR 494
           +  ++G+         +F Q D                                A GM+ 
Sbjct: 666 VLKVYGDAGEVERALALFEQYD--------------------------------ASGMVM 693

Query: 495 ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCC 554
           ++I              +NT++  +++  +    +E+F +M++ G+ P++ T ++++   
Sbjct: 694 DVI-------------CFNTLMGPVLKKDDPETVLELFSRMESRGVEPDSLTMSLVLRAA 740

Query: 555 SIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
                 + A  L+  M  +G       Y   I+
Sbjct: 741 EQAGAAEWAWLLMEKMREEGGVIAMQVYADGIR 773



 Score = 67.0 bits (162), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 75/336 (22%), Positives = 141/336 (41%), Gaps = 46/336 (13%)

Query: 315 LMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECS 374
           L+ QM+  G++P S+TY G ++ I   +  +N M +  +++   L+ +   ++ +     
Sbjct: 183 LLDQMRCDGIKPDSYTYVGVVKGIQGPK--KNAM-MRAVLEDAKLELEGLDLSAVYSAVV 239

Query: 375 KALELDL----AEALLDQISRCTNPK---PFSAFLAACDTMDKPERAIKIFAKMRQK-LR 426
               +D     A AL+D++     P+    + A + AC    K  +A     +MR+  + 
Sbjct: 240 SGYAVDGSWEDASALVDEMFANDVPRDEYTYCAAMNACKEAGKWMQAAAFLPRMREDGVP 299

Query: 427 PDIRTYELLF---SLFGNVNAPY---EEGNMFSQVDSAKRINAIEMDMARNNIQHSHISM 480
           P+   Y  +    + FG  N  +    E + F +  S +      +  A+     +    
Sbjct: 300 PNTIAYNTVIGACAFFGRPNKAWNNNRETSSFLRPTSTRENKGRGLSPAQAEASDAGDFA 359

Query: 481 KNLLKALGAEGMIRELIQY--FCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTC 538
             L++ +  EG+  ++I Y     + +P G    + VL             E+F+ +   
Sbjct: 360 LGLMEEMKREGVEPDIITYGSLMSALSPRGLAGADIVL-------------ELFETLAKS 406

Query: 539 GIPPNAATYNIMIDCCSIIRCF-------KSASALVSMMVRDGFYPQTMTYTALIKILLD 591
           G+ PN+ TY       S IR +       ++   LV M    G  P    Y+A++K L +
Sbjct: 407 GLKPNSITY------VSAIRAYGDKGDWERAEQMLVGMQKEHGVEPNRFCYSAVVKALAN 460

Query: 592 YGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEK 627
            G +  AL  LD +   G+  D ++Y   +  ACEK
Sbjct: 461 GGQWKRALETLDEMRECGLSADPVVYTAAI-GACEK 495


>gi|255583247|ref|XP_002532388.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527912|gb|EEF30000.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 676

 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 98/386 (25%), Positives = 159/386 (41%), Gaps = 20/386 (5%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ ++HA   +     A  L  +M+  G +P+ HTY   I A+  +  L  G  +L  M
Sbjct: 76  TYTVIVHALFESGRRMEAINLFSEMRERGCEPNIHTYTVMINAMCKETKLEEGRRILDEM 135

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQI-SRCTNP--KPFSAFLAACDTMDKP 411
            +  L P   T   L     K   ++ A+ +LD + S   NP  + ++  +         
Sbjct: 136 VEKGLVPSVPTYNALIDGYCKEGMVEAAQEILDLMHSNSCNPNERTYNELICGFCRKKNV 195

Query: 412 ERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
            RA+ + +KM   +L P + TY  L  + G     Y        +DSA R+  +   M  
Sbjct: 196 HRAMALLSKMLESRLTPSVVTYNSL--IHGQCKIGY--------LDSAYRLLNL---MNE 242

Query: 471 NNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHR 527
           N +     +    +  L  +G I E   L     +         Y  ++    +A +   
Sbjct: 243 NGVVPDQWTYSVFIDTLCKKGRIEEANVLFNSLKEKGIKANEVIYTALIDGYCKAGKMDD 302

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A  +  +M T    PN++TYN +ID     R  + A  L+  M++ G      TYT LI 
Sbjct: 303 ANSLLDRMLTEDCLPNSSTYNALIDGLCKERKVQEALLLMESMIQKGLKCTVPTYTILIV 362

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
            +L  GDFD A  +LD +   G   DV +Y   +   C +G I   E ++  M +  V P
Sbjct: 363 AMLKEGDFDYAHRILDQMVSSGYQPDVYIYTAFIHAFCTRGNIKEAEDMMSMMFERGVMP 422

Query: 648 DPSTCHFVFSGYVNCGFHNSAMEALQ 673
           D  T   V   Y   G  N A + L+
Sbjct: 423 DALTYTLVIDAYGGLGLLNPAFDVLK 448



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 133/582 (22%), Positives = 237/582 (40%), Gaps = 40/582 (6%)

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
           M E+    N   Y +M+ A+CK   LEE   ++  + E+ G+ P +P YN+ +    K  
Sbjct: 100 MRERGCEPNIHTYTVMINAMCKETKLEEGRRILDEMVEK-GLVPSVPTYNALIDGYCKEG 158

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK-HYSLSIFSLR 231
            +  A   LDLM S     NE TY EL+     +KN+     +    ++   + S+ +  
Sbjct: 159 MVEAAQEILDLMHSNSCNPNERTYNELICGFCRKKNVHRAMALLSKMLESRLTPSVVTYN 218

Query: 232 KFVWSFTRLRDLKSAYETLQHM-----VALAMMGKLYINR-TSEGRLRSSRLDI-PIPLN 284
             +    ++  L SAY  L  M     V       ++I+    +GR+  + +    +   
Sbjct: 219 SLIHGQCKIGYLDSAYRLLNLMNENGVVPDQWTYSVFIDTLCKKGRIEEANVLFNSLKEK 278

Query: 285 ALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGL 344
            +   +V+  +  D     G+  +   A  L+ +M +    P+S TY+  I  +  +R +
Sbjct: 279 GIKANEVIYTALIDGYCKAGKMDD---ANSLLDRMLTEDCLPNSSTYNALIDGLCKERKV 335

Query: 345 RNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPKP--FSAF 401
           +  + +++ M Q  LK    T   L V   K  + D A  +LDQ +S    P    ++AF
Sbjct: 336 QEALLLMESMIQKGLKCTVPTYTILIVAMLKEGDFDYAHRILDQMVSSGYQPDVYIYTAF 395

Query: 402 LAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKR 460
           + A  T    + A  + + M ++ + PD  TY L+   +G +      G +    D  KR
Sbjct: 396 IHAFCTRGNIKEAEDMMSMMFERGVMPDALTYTLVIDAYGGL------GLLNPAFDVLKR 449

Query: 461 INAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQY-FCDSKTPLGTPTYNTVLHSL 519
                  M       SH +   L+K L  E + ++      CDS   +    +   +  +
Sbjct: 450 -------MFDTGCDPSHHTYSCLIKHLLKEELTKKYKNVALCDSIPNV----FFADVADV 498

Query: 520 VEAQESHRAMEIFKQMKTCGIPPNAATY-NIMIDCCSIIRCFKSASALVSMMVRDGFYPQ 578
            +  +   A+E+F++M   G  PN  TY  ++I  C + R    A  L   M   G  P 
Sbjct: 499 WKMMKFETALELFEKMLEHGCSPNINTYAKLIIGLCKVGR-LGVAQKLFDHMNERGVSPS 557

Query: 579 TMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLL--YNTILKKACEKGRIDVIEFI 636
              Y +L+    + G + +A+ L+  +   G  H  LL   N +     E+G  +  + +
Sbjct: 558 EAIYNSLLNCCCELGIYGDAVRLVGAMMEHG--HLPLLESLNVLFCGLYEEGSKEKAKVV 615

Query: 637 IEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678
              + Q     D      +  G +  G  +   E L V+  R
Sbjct: 616 FSNLLQCGYNDDEVAWKILIDGLLKNGLSDGCSELLGVMEAR 657



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 102/232 (43%), Gaps = 6/232 (2%)

Query: 448 EGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPL 507
           E N+ + V+SA  +  +   M +   + + +S  NL+  L   G + E I  F   +   
Sbjct: 13  EANLNNDVNSAFSVFNM---MPKKGCRRNEVSYTNLIHGLCEVGRVDEGINIFKKMREDD 69

Query: 508 GTPT---YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSAS 564
             PT   Y  ++H+L E+     A+ +F +M+  G  PN  TY +MI+        +   
Sbjct: 70  CYPTVRTYTVIVHALFESGRRMEAINLFSEMRERGCEPNIHTYTVMINAMCKETKLEEGR 129

Query: 565 ALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKA 624
            ++  MV  G  P   TY ALI      G  + A  +LDL+       +   YN ++   
Sbjct: 130 RILDEMVEKGLVPSVPTYNALIDGYCKEGMVEAAQEILDLMHSNSCNPNERTYNELICGF 189

Query: 625 CEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
           C K  +     ++ +M ++++ P   T + +  G    G+ +SA   L +++
Sbjct: 190 CRKKNVHRAMALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDSAYRLLNLMN 241



 Score = 58.9 bits (141), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 110/486 (22%), Positives = 172/486 (35%), Gaps = 59/486 (12%)

Query: 112 MMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKL 171
           +M E  +  +   Y + +  LCK G +EEA+ L   L E+ GI     +Y + +    K 
Sbjct: 239 LMNENGVVPDQWTYSVFIDTLCKKGRIEEANVLFNSLKEK-GIKANEVIYTALIDGYCKA 297

Query: 172 HSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYSLSIFSL 230
             M  AN  LD M +     N  TY  L+     ++ +     + E  I K    ++ + 
Sbjct: 298 GKMDDANSLLDRMLTEDCLPNSSTYNALIDGLCKERKVQEALLLMESMIQKGLKCTVPTY 357

Query: 231 RKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMK 290
              + +  +  D   A+  L  MV+      +YI                          
Sbjct: 358 TILIVAMLKEGDFDYAHRILDQMVSSGYQPDVYI-------------------------- 391

Query: 291 VLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEV 350
                ++  IHA     N   AE +M  M   G+ P + TY   I A      L    +V
Sbjct: 392 -----YTAFIHAFCTRGNIKEAEDMMSMMFERGVMPDALTYTLVIDAYGGLGLLNPAFDV 446

Query: 351 LKIMQQNNLKPQDSTIATLSVECSKALELDLAE-----ALLDQISRCTNPKPFSAFLAAC 405
           LK M      P   T + L       L+ +L +     AL D I     P  F A +A  
Sbjct: 447 LKRMFDTGCDPSHHTYSCL---IKHLLKEELTKKYKNVALCDSI-----PNVFFADVADV 498

Query: 406 DTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAI 464
             M K E A+++F KM      P+I TY  L      V        +F  ++        
Sbjct: 499 WKMMKFETALELFEKMLEHGCSPNINTYAKLIIGLCKVGRLGVAQKLFDHMN-------- 550

Query: 465 EMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCD-SKTPLGTPTYNTVLHSLVEAQ 523
             +   +  +  + S+ N    LG  G    L+    +    PL   + N +   L E  
Sbjct: 551 --ERGVSPSEAIYNSLLNCCCELGIYGDAVRLVGAMMEHGHLPL-LESLNVLFCGLYEEG 607

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
              +A  +F  +  CG   +   + I+ID           S L+ +M   G      TY 
Sbjct: 608 SKEKAKVVFSNLLQCGYNDDEVAWKILIDGLLKNGLSDGCSELLGVMEARGCQIHPQTYR 667

Query: 584 ALIKIL 589
            LI+ L
Sbjct: 668 MLIEGL 673


>gi|357151724|ref|XP_003575883.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Brachypodium distachyon]
          Length = 757

 Score =  107 bits (267), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 81/332 (24%), Positives = 156/332 (46%), Gaps = 16/332 (4%)

Query: 323 GLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIAT-LSVECSKALELDL 381
           G +P   T+  F+  +  +  + + ++VL +M Q   +P   T +T ++  C+   EL+ 
Sbjct: 296 GFEPDRVTFSTFVNGLCQNGHVDHALKVLGLMLQEGCEPDVYTYSTVINCLCNNG-ELEE 354

Query: 382 AEALLDQI--SRC-TNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFS 437
           A+ +++Q+  S C  +   F+  + A  T ++ E A+ +  ++  K L P++ T+ +L +
Sbjct: 355 AKGIVNQMVDSGCLPDTTTFNTLIVALCTENQLEEALDLARELTVKGLSPNVYTFNILIN 414

Query: 438 LFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELI 497
               V  P+    +F ++ S+        ++  N +  +  S   L KAL       +L+
Sbjct: 415 ALCKVGDPHLAVRLFEEMKSS---GCTPDEVTYNILIDNLCSSGKLAKAL-------DLL 464

Query: 498 QYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSII 557
           +    S  P  T TYNT++  L + +    A E+F QM   GI  NA T+N +ID     
Sbjct: 465 KEMEVSGCPQSTVTYNTIIDGLCKRRRIEEAEEVFDQMDVTGIGRNAITFNTLIDGLCNA 524

Query: 558 RCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLY 617
                A+ LV  M+ +G  P  +TY +++      G+  +A ++L  ++  G   DV+ Y
Sbjct: 525 ERIDDAAELVDQMISEGLQPNNVTYNSILTHYCKQGNISKAADILQTMTANGFEVDVVTY 584

Query: 618 NTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649
            T++   C+  R      ++  M    ++P P
Sbjct: 585 ATLINGLCKARRTQAALKLLRGMRMKGMKPTP 616



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 91/390 (23%), Positives = 165/390 (42%), Gaps = 22/390 (5%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +F+ VI A  R + +  A  ++ +M S  + P   T+   +   V +  +   + +   M
Sbjct: 198 TFNTVIDALCRARQARTAVLMLEEMSSCDVAPDETTFTTLMEGFVEEGSIEAALRLKARM 257

Query: 355 QQNNLKPQDSTIATL-SVECSKALELDLAEALLDQISRCTNPK--PFSAFLAACDTMDKP 411
            +    P   T+  L +  C      D    +  +I+    P    FS F+         
Sbjct: 258 SEMGCSPTSVTVNVLINGYCKLGRVGDALGYIQQEIADGFEPDRVTFSTFVNGLCQNGHV 317

Query: 412 ERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           + A+K+   M Q+   PD+ TY  + +   N N   EE               I   M  
Sbjct: 318 DHALKVLGLMLQEGCEPDVYTYSTVINCLCN-NGELEEAK------------GIVNQMVD 364

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHR 527
           +       +   L+ AL  E  + E +    +      +P   T+N ++++L +  + H 
Sbjct: 365 SGCLPDTTTFNTLIVALCTENQLEEALDLARELTVKGLSPNVYTFNILINALCKVGDPHL 424

Query: 528 AMEIFKQMKTCGIPPNAATYNIMID-CCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
           A+ +F++MK+ G  P+  TYNI+ID  CS  +  K+   L  M V  G    T+TY  +I
Sbjct: 425 AVRLFEEMKSSGCTPDEVTYNILIDNLCSSGKLAKALDLLKEMEV-SGCPQSTVTYNTII 483

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
             L      +EA  + D + + GI  + + +NT++   C   RID    +++QM    +Q
Sbjct: 484 DGLCKRRRIEEAEEVFDQMDVTGIGRNAITFNTLIDGLCNAERIDDAAELVDQMISEGLQ 543

Query: 647 PDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
           P+  T + + + Y   G  + A + LQ ++
Sbjct: 544 PNNVTYNSILTHYCKQGNISKAADILQTMT 573



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 107/542 (19%), Positives = 215/542 (39%), Gaps = 38/542 (7%)

Query: 153 GIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAV 212
           GI P +  +N+ + A  +      A L L+ M S  V  +E T+T L++  V + ++ A 
Sbjct: 191 GIEPDVVTFNTVIDALCRARQARTAVLMLEEMSSCDVAPDETTFTTLMEGFVEEGSIEAA 250

Query: 213 HEIWEDYIK-HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMM-GKLYINRTSEG 270
             +     +   S +  ++   +  + +L  +  A   +Q  +A      ++  +    G
Sbjct: 251 LRLKARMSEMGCSPTSVTVNVLINGYCKLGRVGDALGYIQQEIADGFEPDRVTFSTFVNG 310

Query: 271 RLRSSRLDIPIPLNALPVMKVL--------RWSFSDVIHACGRTQNSGLAEQLMLQMQSL 322
             ++  +D     +AL V+ ++         +++S VI+          A+ ++ QM   
Sbjct: 311 LCQNGHVD-----HALKVLGLMLQEGCEPDVYTYSTVINCLCNNGELEEAKGIVNQMVDS 365

Query: 323 GLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLA 382
           G  P + T++  I A+ ++  L   +++ + +    L P   T   L     K  +  LA
Sbjct: 366 GCLPDTTTFNTLIVALCTENQLEEALDLARELTVKGLSPNVYTFNILINALCKVGDPHLA 425

Query: 383 EALLDQI--SRCT-NPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRP-DIRTYELLFSL 438
             L +++  S CT +   ++  +    +  K  +A+ +  +M     P    TY  +   
Sbjct: 426 VRLFEEMKSSGCTPDEVTYNILIDNLCSSGKLAKALDLLKEMEVSGCPQSTVTYNTIIDG 485

Query: 439 FGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL-GAEGM--IRE 495
                   E   +F Q+D                I  + I+   L+  L  AE +    E
Sbjct: 486 LCKRRRIEEAEEVFDQMDV-------------TGIGRNAITFNTLIDGLCNAERIDDAAE 532

Query: 496 LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCS 555
           L+             TYN++L    +     +A +I + M   G   +  TY  +I+   
Sbjct: 533 LVDQMISEGLQPNNVTYNSILTHYCKQGNISKAADILQTMTANGFEVDVVTYATLINGLC 592

Query: 556 IIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVL 615
             R  ++A  L+  M   G  P    Y  +I+ L    +  +AL+L   ++  G P D  
Sbjct: 593 KARRTQAALKLLRGMRMKGMKPTPKAYNPVIQSLFRGNNGRDALSLFREMTEVGGPPDAF 652

Query: 616 LYNTILKKACEKGRI--DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
            Y  + +  C  G    +  +F++E M  N   P+ S+   +  G +N G  +  + A++
Sbjct: 653 TYKIVFRGLCRGGGPIKEAFDFLVE-MADNGFIPEFSSFRMLAEGLLNLGMDDYLIRAIE 711

Query: 674 VL 675
           ++
Sbjct: 712 LI 713



 Score = 58.9 bits (141), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 77/170 (45%), Gaps = 5/170 (2%)

Query: 509 TPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVS 568
           T  YN +L  L E  +       + +M + GI P+  T+N +ID     R  ++A  ++ 
Sbjct: 161 TEVYNHLLTVLAEGSKIKLLESAYTEMSSQGIEPDVVTFNTVIDALCRARQARTAVLMLE 220

Query: 569 MMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
            M      P   T+T L++  ++ G  + AL L   +S  G     +  N ++   C+ G
Sbjct: 221 EMSSCDVAPDETTFTTLMEGFVEEGSIEAALRLKARMSEMGCSPTSVTVNVLINGYCKLG 280

Query: 629 RIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAME-ALQVLSM 677
           R+      I+Q   +  +PD  T    FS +VN    N  ++ AL+VL +
Sbjct: 281 RVGDALGYIQQEIADGFEPDRVT----FSTFVNGLCQNGHVDHALKVLGL 326



 Score = 49.3 bits (116), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 70/353 (19%), Positives = 133/353 (37%), Gaps = 18/353 (5%)

Query: 25  HERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHS 84
            E + + N++  S  L  T   N   ++  T+ Q+ +AL          L   L     S
Sbjct: 353 EEAKGIVNQMVDSGCLPDTTTFNTLIVALCTENQLEEAL---------DLARELTVKGLS 403

Query: 85  LGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNL 144
                F  ++N   +  DP   +  +  M+      +   Y +++  LC  G L +A +L
Sbjct: 404 PNVYTFNILINALCKVGDPHLAVRLFEEMKSSGCTPDEVTYNILIDNLCSSGKLAKALDL 463

Query: 145 IYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAV 204
           +  + E  G       YN+ +    K   +  A    D MD   +G+N +T+  L+    
Sbjct: 464 LKEM-EVSGCPQSTVTYNTIIDGLCKRRRIEEAEEVFDQMDVTGIGRNAITFNTLIDGLC 522

Query: 205 WQKNLSAVHEIWEDYIKH-YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLY 263
             + +    E+ +  I      +  +    +  + +  ++  A + LQ M A      + 
Sbjct: 523 NAERIDDAAELVDQMISEGLQPNNVTYNSILTHYCKQGNISKAADILQTMTANGFEVDVV 582

Query: 264 -----INRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQ 318
                IN   + R   + L +   +  +  MK    +++ VI +  R  N   A  L  +
Sbjct: 583 TYATLINGLCKARRTQAALKLLRGMR-MKGMKPTPKAYNPVIQSLFRGNNGRDALSLFRE 641

Query: 319 MQSLGLQPSSHTYDGFIRAIVSDRG-LRNGMEVLKIMQQNNLKPQDSTIATLS 370
           M  +G  P + TY    R +    G ++   + L  M  N   P+ S+   L+
Sbjct: 642 MTEVGGPPDAFTYKIVFRGLCRGGGPIKEAFDFLVEMADNGFIPEFSSFRMLA 694


>gi|334183590|ref|NP_176479.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75179661|sp|Q9LQ16.1|PPR94_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62910
 gi|8493578|gb|AAF75801.1|AC011000_4 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
           repeats [Arabidopsis thaliana]
 gi|332195899|gb|AEE34020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 632

 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 122/554 (22%), Positives = 234/554 (42%), Gaps = 43/554 (7%)

Query: 155 YPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHE 214
           +P +  +N  L A AK++         + M +  +  +  TY+  +     +  LS    
Sbjct: 80  FPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALA 139

Query: 215 IWEDYIK-HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALA-----------MMGKL 262
           +    +K  Y   I +L   +  +   + +  A   +  MV +            + G  
Sbjct: 140 VLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLF 199

Query: 263 YINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSL 322
             N+ SE     + +D  +     P +     ++  V++   +  +  LA  L+ +M+  
Sbjct: 200 LHNKASEA---VALVDQMVQRGCQPDL----VTYGTVVNGLCKRGDIDLALSLLKKMEKG 252

Query: 323 GLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL-SVECSKALELDL 381
            ++     Y+  I  +   + + + + +   M    ++P   T ++L S  C+     D 
Sbjct: 253 KIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDA 312

Query: 382 AEALLDQISRCTNPK--PFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSL 438
           +  L D I R  NP    FSA + A     K   A K++ +M ++ + PDI TY  L + 
Sbjct: 313 SRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLING 372

Query: 439 FGNVNAPYEEGNMFSQVDSAKRINA--IEMDMARNNIQHSHISMKNLLKALGAE-GMIRE 495
           F           M  ++D AK +    I  D   N + +S + +K   KA   E GM  E
Sbjct: 373 FC----------MHDRLDEAKHMFELMISKDCFPNVVTYSTL-IKGFCKAKRVEEGM--E 419

Query: 496 LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCS 555
           L +          T TY T++H   +A++   A  +FKQM + G+ PN  TYNI++D   
Sbjct: 420 LFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLD--G 477

Query: 556 IIRCFKSASALVSM--MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHD 613
           + +  K A A+V    + R    P   TY  +I+ +   G  ++   L   +SL+G+  +
Sbjct: 478 LCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPN 537

Query: 614 VLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           V+ YNT++   C KG  +  + ++++M ++   P+  T + +    +  G   ++ E ++
Sbjct: 538 VIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREASAELIK 597

Query: 674 VLSMRMLCEEVSTL 687
            +       + ST+
Sbjct: 598 EMRSCGFAGDASTI 611



 Score = 66.6 bits (161), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 53/226 (23%), Positives = 100/226 (44%), Gaps = 7/226 (3%)

Query: 439 FGNVNAPYEEGNMFSQVDSAKRINAIEM--DMARNNIQHSHISMKNLLKALGAEGMIREL 496
           F + +  Y E       D  K  +A+++  DM ++    S +    LL A+       EL
Sbjct: 43  FASASGDYREILRNRLSDIIKVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKF-EL 101

Query: 497 IQYFCDSKTPLGTP----TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID 552
           +    +    LG      TY+  ++      +   A+ +  +M   G  P+  T + +++
Sbjct: 102 VISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLN 161

Query: 553 CCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPH 612
                +    A ALV  MV  G+ P T T+T LI  L  +    EA+ L+D +   G   
Sbjct: 162 GYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQP 221

Query: 613 DVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
           D++ Y T++   C++G ID+   ++++M + K++ D    + +  G
Sbjct: 222 DLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDG 267



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 57/279 (20%), Positives = 122/279 (43%), Gaps = 14/279 (5%)

Query: 93  ILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERY 152
           ++N   +  D    +   + ME+ +I  +   Y  ++  LCK  ++++A NL   +  + 
Sbjct: 229 VVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNK- 287

Query: 153 GIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAV 212
           GI P +  Y+S +           A+  L  M  R +  N VT++ L+   V +  L   
Sbjct: 288 GIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEA 347

Query: 213 HEIWEDYIKH-YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTS--- 268
            +++++ IK      IF+    +  F     L  A    +HM  L +    + N  +   
Sbjct: 348 EKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEA----KHMFELMISKDCFPNVVTYST 403

Query: 269 --EGRLRSSRLDIPIPLNALPVMKVL---RWSFSDVIHACGRTQNSGLAEQLMLQMQSLG 323
             +G  ++ R++  + L      + L     +++ +IH   + ++   A+ +  QM S+G
Sbjct: 404 LIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVG 463

Query: 324 LQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQ 362
           + P+  TY+  +  +  +  L   M V + +Q++ ++P 
Sbjct: 464 VHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPD 502



 Score = 53.5 bits (127), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 82/433 (18%), Positives = 170/433 (39%), Gaps = 47/433 (10%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y  ++  LCK G ++ A +L+  + E+  I   + +YN+ +    K   M  A      M
Sbjct: 226 YGTVVNGLCKRGDIDLALSLLKKM-EKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEM 284

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYSLSIFSLRKFVWSFTRLRDL 243
           D++ +  +  TY+ L+         S    +  D I +  + ++ +    + +F +   L
Sbjct: 285 DNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKL 344

Query: 244 KSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHAC 303
             A +    M+                  RS   DI              +++S +I+  
Sbjct: 345 VEAEKLYDEMIK-----------------RSIDPDI--------------FTYSSLINGF 373

Query: 304 GRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQD 363
                   A+ +   M S    P+  TY   I+     + +  GME+ + M Q  L    
Sbjct: 374 CMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNT 433

Query: 364 STIATLSVECSKALELDLAEALLDQ-ISRCTNPK--PFSAFLAACDTMDKPERAIKIFAK 420
            T  TL     +A + D A+ +  Q +S   +P    ++  L       K  +A+ +F  
Sbjct: 434 VTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEY 493

Query: 421 M-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHIS 479
           + R  + PDI TY ++           +   +F  +     +  +  ++   N   S   
Sbjct: 494 LQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLS----LKGVSPNVIAYNTMISGFC 549

Query: 480 MKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCG 539
            K   +   A+ +++++ +   D   P  + TYNT++ + +   +   + E+ K+M++CG
Sbjct: 550 RKGSKEE--ADSLLKKMKE---DGPLP-NSGTYNTLIRARLRDGDREASAELIKEMRSCG 603

Query: 540 IPPNAATYNIMID 552
              +A+T  ++ +
Sbjct: 604 FAGDASTIGLVTN 616


>gi|414887035|tpg|DAA63049.1| TPA: crs2 associated factor1 [Zea mays]
          Length = 668

 Score =  105 bits (262), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 89/361 (24%), Positives = 156/361 (43%), Gaps = 19/361 (5%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLG-LQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           + + +I A G       AE L L+    G ++P +  Y+  ++  V    L+N  +VL  
Sbjct: 265 AVTALISALGTAGRVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVRIASLKNAEQVLDE 324

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMD 409
           M Q  + P ++T + L    ++A   + A  LL ++      KP    FS  LA      
Sbjct: 325 MSQCGVAPDEATYSLLVDAYTRAGRWESARILLKEME-ADGVKPSSYVFSRILAGFRDRG 383

Query: 410 KPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
             ++A  +  +M+   +RPD   Y ++   FG  N      + F+++    R   IE D+
Sbjct: 384 DWQKAFAVLREMQASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFNKM----REEGIEPDV 439

Query: 469 AR-NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHR 527
              N +  +H          G      EL +   +S  P GT TYN +++ L E +    
Sbjct: 440 VTWNTLIDAHCKG-------GRHDRAAELFEEMRESNCPPGTTTYNIMINLLGEQEHWEG 492

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
              +  +MK  G+ PN  TY  ++D       +K A   +  M  DG  P    Y AL+ 
Sbjct: 493 VEAMLSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVN 552

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
                G  D ALN++  +  +G+   +L+ N+++    E  R+     +++ M +N ++P
Sbjct: 553 AYAQRGLADHALNVVKAMKADGLEVSILVLNSLINAFGEDRRVVEAFSVLQFMRENGLRP 612

Query: 648 D 648
           D
Sbjct: 613 D 613



 Score = 76.3 bits (186), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 95/422 (22%), Positives = 159/422 (37%), Gaps = 62/422 (14%)

Query: 270 GRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSH 329
           G LR SRL+   PL            FSD+I A  R      A +L+   Q++GL P S+
Sbjct: 217 GDLRESRLEPDAPL------------FSDLISAFARAALPDAALELLASAQAIGLTPRSN 264

Query: 330 TYDGFIRAI-VSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ 388
                I A+  + R        L+      +KP+      L     +   L  AE +LD+
Sbjct: 265 AVTALISALGTAGRVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVRIASLKNAEQVLDE 324

Query: 389 ISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEE 448
           +S+C                                + PD  TY LL      V+A    
Sbjct: 325 MSQC-------------------------------GVAPDEATYSLL------VDAYTRA 347

Query: 449 GNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLG 508
           G   S      RI   EM+   + ++ S      +L      G  ++      + +    
Sbjct: 348 GRWES-----ARILLKEMEA--DGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQASGV 400

Query: 509 TPT---YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASA 565
            P    YN ++ +  +      AM+ F +M+  GI P+  T+N +ID          A+ 
Sbjct: 401 RPDRHFYNVMIDTFGKYNCLGHAMDAFNKMREEGIEPDVVTWNTLIDAHCKGGRHDRAAE 460

Query: 566 LVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKAC 625
           L   M      P T TY  +I +L +   ++    +L  +  +G+  +++ Y T++    
Sbjct: 461 LFEEMRESNCPPGTTTYNIMINLLGEQEHWEGVEAMLSEMKEQGLVPNIITYTTLVDVYG 520

Query: 626 EKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVS 685
             GR       IE M  + ++P P+  H + + Y   G  + A+  ++ +    L  EVS
Sbjct: 521 RSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMKADGL--EVS 578

Query: 686 TL 687
            L
Sbjct: 579 IL 580


>gi|162462150|ref|NP_001105879.1| chloroplast RNA processing1 [Zea mays]
 gi|3289002|gb|AAC25599.1| CRP1 [Zea mays]
          Length = 668

 Score =  105 bits (262), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 89/361 (24%), Positives = 156/361 (43%), Gaps = 19/361 (5%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLG-LQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           + + +I A G       AE L L+    G ++P +  Y+  ++  V    L+N  +VL  
Sbjct: 265 AVTALISALGTAGRVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVRIGSLKNAEQVLDE 324

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMD 409
           M Q  + P ++T + L    ++A   + A  LL ++      KP    FS  LA      
Sbjct: 325 MSQCGVAPDEATYSLLVDAYTRAGRWESARILLKEME-ADGVKPSSYVFSRILAGFRDRG 383

Query: 410 KPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
             ++A  +  +M+   +RPD   Y ++   FG  N      + F+++    R   IE D+
Sbjct: 384 DWQKAFAVLREMQASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFNKM----REEGIEPDV 439

Query: 469 AR-NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHR 527
              N +  +H          G      EL +   +S  P GT TYN +++ L E +    
Sbjct: 440 VTWNTLIDAHCKG-------GRHDRAAELFEEMRESNCPPGTTTYNIMINLLGEQEHWEG 492

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
              +  +MK  G+ PN  TY  ++D       +K A   +  M  DG  P    Y AL+ 
Sbjct: 493 VEAMLSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVN 552

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
                G  D ALN++  +  +G+   +L+ N+++    E  R+     +++ M +N ++P
Sbjct: 553 AYAQRGLADHALNVVKAMKADGLEVSILVLNSLINAFGEDRRVVEAFSVLQFMRENGLRP 612

Query: 648 D 648
           D
Sbjct: 613 D 613



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 95/422 (22%), Positives = 159/422 (37%), Gaps = 62/422 (14%)

Query: 270 GRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSH 329
           G LR SRL+   PL            FSD+I A  R      A +L+   Q++GL P S+
Sbjct: 217 GDLRESRLEPDAPL------------FSDLISAFARAALPDAALELLASAQAIGLTPRSN 264

Query: 330 TYDGFIRAI-VSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ 388
                I A+  + R        L+      +KP+      L     +   L  AE +LD+
Sbjct: 265 AVTALISALGTAGRVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVRIGSLKNAEQVLDE 324

Query: 389 ISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEE 448
           +S+C                                + PD  TY LL      V+A    
Sbjct: 325 MSQC-------------------------------GVAPDEATYSLL------VDAYTRA 347

Query: 449 GNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLG 508
           G   S      RI   EM+   + ++ S      +L      G  ++      + +    
Sbjct: 348 GRWES-----ARILLKEMEA--DGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQASGV 400

Query: 509 TPT---YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASA 565
            P    YN ++ +  +      AM+ F +M+  GI P+  T+N +ID          A+ 
Sbjct: 401 RPDRHFYNVMIDTFGKYNCLGHAMDAFNKMREEGIEPDVVTWNTLIDAHCKGGRHDRAAE 460

Query: 566 LVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKAC 625
           L   M      P T TY  +I +L +   ++    +L  +  +G+  +++ Y T++    
Sbjct: 461 LFEEMRESNCPPGTTTYNIMINLLGEQEHWEGVEAMLSEMKEQGLVPNIITYTTLVDVYG 520

Query: 626 EKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVS 685
             GR       IE M  + ++P P+  H + + Y   G  + A+  ++ +    L  EVS
Sbjct: 521 RSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMKADGL--EVS 578

Query: 686 TL 687
            L
Sbjct: 579 IL 580


>gi|302787647|ref|XP_002975593.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
 gi|300156594|gb|EFJ23222.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
          Length = 471

 Score =  105 bits (262), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 93/373 (24%), Positives = 156/373 (41%), Gaps = 21/373 (5%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL-S 370
           A +L  +M S+GL+PS +TY+  + A   +  ++  ME+ K M +   +P   T +T+ S
Sbjct: 62  ANRLYEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIIS 121

Query: 371 VECSKALELDLAEALLDQ-ISR-CT-NPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LR 426
             C      +  E L  + I R C+ N   ++A +      +  ERA K+  +M  K   
Sbjct: 122 GLCKTGKVTEALEMLFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYV 181

Query: 427 PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKA 486
           PD  TY  + S    +    E    F               M         ++   LL A
Sbjct: 182 PDNITYNTILSGLCRMGKVSEAKQFFDS-------------MPSRGYSPDVVAYNGLLDA 228

Query: 487 LGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPN 543
           L  EG   E ++ F D       P   TYN++L  L        A E+FK+M   G  PN
Sbjct: 229 LYKEGKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVASGCAPN 288

Query: 544 AATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLD 603
            ATY+I++      +    A  ++  M + G  P  +TY  L+  L      D+A  L  
Sbjct: 289 GATYSIVLSGHCRAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFS 348

Query: 604 LVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
            +   G   D++ Y+ +L   C+  ++     + ++M + K+ PD  T + +  G    G
Sbjct: 349 TMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAG 408

Query: 664 FHNSAMEALQVLS 676
             + A + L  ++
Sbjct: 409 KLDEAKDLLDQMT 421



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 87/437 (19%), Positives = 162/437 (37%), Gaps = 54/437 (12%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y +++    K G ++EA N +Y      G+ P +  YNS L A  K   M  A      M
Sbjct: 46  YNILIDGYAKKGRVDEA-NRLYEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTM 104

Query: 185 DSRMVGKNEVTYTELLK-LAVWQKNLSAVHEIWEDYI-KHYSLSIFSLRKFVWSFTRLRD 242
             +    + VTY+ ++  L    K   A+  ++   I +  S +  +    +    +  +
Sbjct: 105 AEKGFEPDVVTYSTIISGLCKTGKVTEALEMLFHKMIERGCSANTVAYNALINGLCKDEN 164

Query: 243 LKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHA 302
           ++ AY+ L+ M +     K Y                 +P N          +++ ++  
Sbjct: 165 IERAYKLLEEMAS-----KGY-----------------VPDN---------ITYNTILSG 193

Query: 303 CGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQ 362
             R      A+Q    M S G  P    Y+G + A+  +      M++ K +      P 
Sbjct: 194 LCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVIAKGYMPD 253

Query: 363 DSTIATLSVECSKALELDLAEALLDQI--SRCT-NPKPFSAFLAACDTMDKPERAIKIFA 419
             T  ++ +  ++   +D AE +  ++  S C  N   +S  L+      K + A K+  
Sbjct: 254 TVTYNSILLGLARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVDDAHKVLE 313

Query: 420 KMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHI 478
           +M +    PD+ TY +L       N   +   +FS              M  N      +
Sbjct: 314 EMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFST-------------MVDNGCAPDIV 360

Query: 479 SMKNLLKALGAEGMI---RELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQM 535
           S   +L  L     +   R L     + K      T+N ++  L +A +   A ++  QM
Sbjct: 361 SYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDQM 420

Query: 536 KTCGIPPNAATYNIMID 552
              G  P+   YN +++
Sbjct: 421 TCSGCAPDYVAYNTLMN 437


>gi|302806733|ref|XP_002985098.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
 gi|300147308|gb|EFJ13973.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
          Length = 659

 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 129/619 (20%), Positives = 242/619 (39%), Gaps = 53/619 (8%)

Query: 55  TQMQIVDALCR-GERSRA-SHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRM 112
           T   I+ A C+ G+  RA SH    +  +  +       H L  C R      + E +++
Sbjct: 61  THNTILKAYCQIGDLDRALSHFRGKMWCSPTAFTYCILIHGLCQCQR------IDEAYQL 114

Query: 113 MEE---KEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACA 169
           ++E   K+   +   Y  ++  LCK G ++ A N++  + ER  + P +  Y S +  C 
Sbjct: 115 LDEMIQKDCHPDAAVYNCLIAGLCKMGKIDAARNVLKMMLERSCV-PDVITYTSLIVGCC 173

Query: 170 KLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK-HYSLSIF 228
           + +++  A   ++ M    +  + V Y  LL     Q  L  V ++ E+ ++       F
Sbjct: 174 QTNALDEARKLMEKMKESGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTF 233

Query: 229 SLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYI-NRTSEGRLRSSRLDIP------- 280
           S    V         + A + L+ M+       +   N   +G  + S++D         
Sbjct: 234 SYNTVVACLCESGKYEEAGKILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDM 293

Query: 281 IPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVS 340
           +     P +     +++ +I    R      A ++M  M   G+ P   TY+  +  +  
Sbjct: 294 VGRRCAPTV----ITYTTLIGGFSRADRLADAYRVMEDMFKAGISPDLVTYNCLLDGLCK 349

Query: 341 DRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPK--P 397
              L    E+L++M + +  P   T + L     K  ++D A  LL+  + R   P    
Sbjct: 350 AGKLEEAHELLEVMVEKDCAPDVVTYSILVNGLCKLGKVDDARLLLEMMLERGCQPNLVT 409

Query: 398 FSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVD 456
           F+  +       K +   K+   M++    PD+ TY  L                   +D
Sbjct: 410 FNTMIDGFCKAGKVDEGHKVLELMKEVSCTPDVVTYSTL-------------------ID 450

Query: 457 SAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPT----Y 512
              + N ++   A   I     S  ++L+ L + G + E  Q   D  T  G P     Y
Sbjct: 451 GYCKANRMQDAFAILGISPDKASYSSMLEGLCSTGKVEE-AQEVMDLMTKQGCPPTSSHY 509

Query: 513 NTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVR 572
             ++  L + +    A+++ + M   G  PN  TY+I+I+     +  + A  ++ +M+ 
Sbjct: 510 ALIIGGLCDVERGDEALKMLQVMSERGCEPNLYTYSILINGLCKTKRVEDAINVLDVMLE 569

Query: 573 DGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDV 632
            G  P   TYT+LI         D A      +   G   D L YN ++   C+ G ++ 
Sbjct: 570 KGCVPDVATYTSLIDGFCKINKMDAAYQCFKTMRDSGCEPDKLAYNILISGFCQSGNVEK 629

Query: 633 IEFIIEQMHQNKVQPDPST 651
              +++ M +    PD +T
Sbjct: 630 AIEVMQLMLEKGCNPDAAT 648



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 83/390 (21%), Positives = 161/390 (41%), Gaps = 21/390 (5%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           +++  +IH   + Q    A QL+ +M      P +  Y+  I  +     +     VLK+
Sbjct: 93  FTYCILIHGLCQCQRIDEAYQLLDEMIQKDCHPDAAVYNCLIAGLCKMGKIDAARNVLKM 152

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDK 410
           M + +  P   T  +L V C +   LD A  L++++       +   ++A L      ++
Sbjct: 153 MLERSCVPDVITYTSLIVGCCQTNALDEARKLMEKMKESGLTPDTVAYNALLNGLCKQNQ 212

Query: 411 PERAIKIFAKMRQKLR-PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
            E   K+  +M +  R PD  +Y  + +         E G +  ++        IE    
Sbjct: 213 LEEVSKLLEEMVEAGREPDTFSYNTVVACLCESGKYEEAGKILEKM--------IEKKCG 264

Query: 470 RNNIQHSHI--SMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHR 527
            + + ++ +      + K   AE ++ +++   C         TY T++     A     
Sbjct: 265 PDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVI----TYTTLIGGFSRADRLAD 320

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A  + + M   GI P+  TYN ++D        + A  L+ +MV     P  +TY+ L+ 
Sbjct: 321 AYRVMEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVN 380

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
            L   G  D+A  LL+++   G   +++ +NT++   C+ G++D    ++E M +    P
Sbjct: 381 GLCKLGKVDDARLLLEMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVSCTP 440

Query: 648 DPSTCHFVFSGYVNCGFHNSAMEALQVLSM 677
           D  T   +  GY      N   +A  +L +
Sbjct: 441 DVVTYSTLIDGYCK---ANRMQDAFAILGI 467



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 112/494 (22%), Positives = 202/494 (40%), Gaps = 29/494 (5%)

Query: 108 ETWRMMEE-KEIGL--NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSF 164
           E  ++ME+ KE GL  +   Y  ++  LCK   LEE S L+  + E  G  P    YN+ 
Sbjct: 180 EARKLMEKMKESGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEA-GREPDTFSYNTV 238

Query: 165 LGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHY 223
           +    +      A   L+ M  +  G + VTY  L+        +     + ED + +  
Sbjct: 239 VACLCESGKYEEAGKILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRRC 298

Query: 224 SLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYI-NRTSEGRLRSSRLDIPIP 282
           + ++ +    +  F+R   L  AY  ++ M    +   L   N   +G  ++ +L+    
Sbjct: 299 APTVITYTTLIGGFSRADRLADAYRVMEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHE 358

Query: 283 LNALPVMK-----VLRWS-FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIR 336
           L  + V K     V+ +S   + +   G+  ++ L  ++ML+    G QP+  T++  I 
Sbjct: 359 LLEVMVEKDCAPDVVTYSILVNGLCKLGKVDDARLLLEMMLER---GCQPNLVTFNTMID 415

Query: 337 AIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPK 396
                  +  G +VL++M++ +  P   T +TL     KA  +  A A+L  IS   +  
Sbjct: 416 GFCKAGKVDEGHKVLELMKEVSCTPDVVTYSTLIDGYCKANRMQDAFAILG-IS--PDKA 472

Query: 397 PFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQV 455
            +S+ L    +  K E A ++   M +Q   P    Y L+     +V    E G+     
Sbjct: 473 SYSSMLEGLCSTGKVEEAQEVMDLMTKQGCPPTSSHYALIIGGLCDV----ERGD----- 523

Query: 456 DSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTV 515
           ++ K +  +       N+    I +  L K    E  I  L         P    TY ++
Sbjct: 524 EALKMLQVMSERGCEPNLYTYSILINGLCKTKRVEDAINVLDVMLEKGCVP-DVATYTSL 582

Query: 516 LHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGF 575
           +    +  +   A + FK M+  G  P+   YNI+I         + A  ++ +M+  G 
Sbjct: 583 IDGFCKINKMDAAYQCFKTMRDSGCEPDKLAYNILISGFCQSGNVEKAIEVMQLMLEKGC 642

Query: 576 YPQTMTYTALIKIL 589
            P   TY +L++ L
Sbjct: 643 NPDAATYFSLMRSL 656



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 78/377 (20%), Positives = 155/377 (41%), Gaps = 20/377 (5%)

Query: 314 QLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVEC 373
           +L+ +M   G +P + +Y+  +  +          ++L+ M +    P   T  +L    
Sbjct: 218 KLLEEMVEAGREPDTFSYNTVVACLCESGKYEEAGKILEKMIEKKCGPDVVTYNSLMDGF 277

Query: 374 SKALELDLAEALL-DQISRCTNPK--PFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDI 429
            K  ++D AE LL D + R   P    ++  +      D+   A ++   M +  + PD+
Sbjct: 278 CKVSKMDEAERLLEDMVGRRCAPTVITYTTLIGGFSRADRLADAYRVMEDMFKAGISPDL 337

Query: 430 RTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGA 489
            TY  L           EE +   +V        +E D A + + +S +   N L  LG 
Sbjct: 338 VTYNCLLDGLCKA-GKLEEAHELLEV-------MVEKDCAPDVVTYSILV--NGLCKLGK 387

Query: 490 EGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNI 549
               R L++   +        T+NT++    +A +     ++ + MK     P+  TY+ 
Sbjct: 388 VDDARLLLEMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVSCTPDVVTYST 447

Query: 550 MIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEG 609
           +ID        + A A++      G  P   +Y+++++ L   G  +EA  ++DL++ +G
Sbjct: 448 LIDGYCKANRMQDAFAIL------GISPDKASYSSMLEGLCSTGKVEEAQEVMDLMTKQG 501

Query: 610 IPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAM 669
            P     Y  I+   C+  R D    +++ M +   +P+  T   + +G         A+
Sbjct: 502 CPPTSSHYALIIGGLCDVERGDEALKMLQVMSERGCEPNLYTYSILINGLCKTKRVEDAI 561

Query: 670 EALQVLSMRMLCEEVST 686
             L V+  +    +V+T
Sbjct: 562 NVLDVMLEKGCVPDVAT 578



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 60/260 (23%), Positives = 112/260 (43%), Gaps = 15/260 (5%)

Query: 424 KLRPDIRTYELLFSLFGNVNAPYEEG-----NMFSQVDSAKRINAIEMDMARNNIQHSHI 478
           K+RP +  Y      F + + P           FS+  ++K +  I  +M         I
Sbjct: 2   KVRP-LEGYSFFRERFSDPSKPSNSTYGALITGFSRAGNSKMVLEIANEMLARRFSPDVI 60

Query: 479 SMKNLLKALGAEGMIRELIQYF-----CDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFK 533
           +   +LKA    G +   + +F     C S T     TY  ++H L + Q    A ++  
Sbjct: 61  THNTILKAYCQIGDLDRALSHFRGKMWC-SPTAF---TYCILIHGLCQCQRIDEAYQLLD 116

Query: 534 QMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYG 593
           +M      P+AA YN +I     +    +A  ++ MM+     P  +TYT+LI       
Sbjct: 117 EMIQKDCHPDAAVYNCLIAGLCKMGKIDAARNVLKMMLERSCVPDVITYTSLIVGCCQTN 176

Query: 594 DFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCH 653
             DEA  L++ +   G+  D + YN +L   C++ +++ +  ++E+M +   +PD  + +
Sbjct: 177 ALDEARKLMEKMKESGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYN 236

Query: 654 FVFSGYVNCGFHNSAMEALQ 673
            V +     G +  A + L+
Sbjct: 237 TVVACLCESGKYEEAGKILE 256



 Score = 46.2 bits (108), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 72/179 (40%), Gaps = 8/179 (4%)

Query: 498 QYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC-CSI 556
           + F D   P    TY  ++     A  S   +EI  +M      P+  T+N ++   C I
Sbjct: 14  ERFSDPSKP-SNSTYGALITGFSRAGNSKMVLEIANEMLARRFSPDVITHNTILKAYCQI 72

Query: 557 IRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLL 616
               ++ S     M      P   TY  LI  L      DEA  LLD +  +    D  +
Sbjct: 73  GDLDRALSHFRGKM---WCSPTAFTYCILIHGLCQCQRIDEAYQLLDEMIQKDCHPDAAV 129

Query: 617 YNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
           YN ++   C+ G+ID    +++ M +    PD  T     S  V C   N+  EA +++
Sbjct: 130 YNCLIAGLCKMGKIDAARNVLKMMLERSCVPDVIT---YTSLIVGCCQTNALDEARKLM 185


>gi|242050480|ref|XP_002462984.1| hypothetical protein SORBIDRAFT_02g035800 [Sorghum bicolor]
 gi|241926361|gb|EER99505.1| hypothetical protein SORBIDRAFT_02g035800 [Sorghum bicolor]
          Length = 668

 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 89/361 (24%), Positives = 157/361 (43%), Gaps = 19/361 (5%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLG-LQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           + + +I A G       AE L L+    G ++P +  Y+  ++  V    L+N  +VL  
Sbjct: 265 AVTALISALGSAGRVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVRIGSLKNAEQVLDE 324

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMD 409
           M Q  + P ++T + L    ++A   + A  LL ++      KP    FS  LA      
Sbjct: 325 MSQCGVAPDEATYSLLVDAYTRAGRWESARILLKEME-ADGVKPSSYVFSRILAGFRDRG 383

Query: 410 KPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
             ++A  +  +M+   +RPD   Y ++   FG  N      + F ++    R   IE D+
Sbjct: 384 DWQKAFAVLREMQASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRM----REEEIEPDV 439

Query: 469 AR-NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHR 527
              N +  +H       +A+       EL +   +S  P GT TYN +++ L E +    
Sbjct: 440 VTWNTLIDAHCKGGRHDRAM-------ELFEEMRESNCPPGTTTYNIMINLLGEQERWEG 492

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
              +  +MK  G+ PN  TY  ++D       +K A   +  M  DG  P    Y AL+ 
Sbjct: 493 VEAMLSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVN 552

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
                G  D ALN++  +  +G+   +L+ N+++    E  R+     +++ M +N ++P
Sbjct: 553 AYAQRGLADHALNVVKAMKADGLEVSILVLNSLINAFGEDRRVVEAFSVLQFMKENGLRP 612

Query: 648 D 648
           D
Sbjct: 613 D 613



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 86/407 (21%), Positives = 146/407 (35%), Gaps = 89/407 (21%)

Query: 270 GRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSH 329
           G LR SRL+   PL            FSD+I A  R      A +L+   Q++GL P S+
Sbjct: 217 GDLRESRLEPDAPL------------FSDLISAFARAALPDAALELLASAQAIGLTPRSN 264

Query: 330 TYDGFIRAIVS-DRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ 388
                I A+ S  R        L+      +KP+      L     +   L  AE +LD+
Sbjct: 265 AVTALISALGSAGRVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVRIGSLKNAEQVLDE 324

Query: 389 ISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEE 448
           +S+C                                + PD  TY LL             
Sbjct: 325 MSQC-------------------------------GVAPDEATYSLL------------- 340

Query: 449 GNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLG 508
                 VD+  R    E             S + LLK + A+G+             P  
Sbjct: 341 ------VDAYTRAGRWE-------------SARILLKEMEADGV------------KP-S 368

Query: 509 TPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVS 568
           +  ++ +L    +  +  +A  + ++M+  G+ P+   YN+MID      C   A     
Sbjct: 369 SYVFSRILAGFRDRGDWQKAFAVLREMQASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFD 428

Query: 569 MMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
            M  +   P  +T+  LI      G  D A+ L + +     P     YN ++    E+ 
Sbjct: 429 RMREEEIEPDVVTWNTLIDAHCKGGRHDRAMELFEEMRESNCPPGTTTYNIMINLLGEQE 488

Query: 629 RIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
           R + +E ++ +M +  + P+  T   +   Y   G +  A++ ++ +
Sbjct: 489 RWEGVEAMLSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIEAM 535


>gi|302784708|ref|XP_002974126.1| hypothetical protein SELMODRAFT_100773 [Selaginella moellendorffii]
 gi|300158458|gb|EFJ25081.1| hypothetical protein SELMODRAFT_100773 [Selaginella moellendorffii]
          Length = 538

 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 83/383 (21%), Positives = 178/383 (46%), Gaps = 27/383 (7%)

Query: 303 CGRTQNSGLAEQLMLQMQSLG--LQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLK 360
           CG    +G+A Q +  ++ L     P+   Y+G I  +     + +  +VL+ M + ++ 
Sbjct: 65  CG----AGMANQALELVRELSGVYTPTVFIYNGIITGLCRASRVMDAYKVLEKMVEESIV 120

Query: 361 PQDSTIATLSVECSKALELDLAEALLDQISR--CT-NPKPFSAFLAACDTMDKPERAIKI 417
           P   T   L     ++ +  LA  +  ++ R  C  NP  +   +       + + A+++
Sbjct: 121 PNVFTYTILLNGLCRSNKTKLAREVFQEMKRNGCKPNPITYGTLIQHLSRAGEIDEALRV 180

Query: 418 FAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHS 476
             + R  +L  D+ T     ++ G +          S++D A +      +M +  ++ +
Sbjct: 181 MIEQRSLELPTDVIT---CTTIVGGLCKA-------SRLDDALKFME---EMRQMGVRPN 227

Query: 477 HISMKNLLKALGAEGMIRELIQYFCDSKTPLG----TPTYNTVLHSLVEAQESHRAMEIF 532
            ++  NL+      G +  +I++F + K   G       Y   L +L +A    RA +  
Sbjct: 228 EVTYSNLVHGFRQHGELDRVIRFFEEEKARKGGSLEAAAYPGYLDALCKAGYLDRARKSV 287

Query: 533 KQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDY 592
           ++++  G+ P+  TY+++I+  +    F ++  L+  M R+G  P  +TY+ LI +L   
Sbjct: 288 EELRQSGVVPDVVTYSMLINTFARAGQFDASLELLEDMRRNGVKPDVVTYSTLINVLCKE 347

Query: 593 GDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTC 652
             F +A  LL+L+   G P +V+ YN+++   C+ G++D +  + E M +++  PD  T 
Sbjct: 348 RKFQDAFRLLELMEAAGSPPNVVTYNSVMDGLCKSGKMDEVHRVYEMMLKSRCSPDVVTY 407

Query: 653 HFVFSGYVNCGFHNSAMEALQVL 675
             + +G    G  +SA++  +++
Sbjct: 408 SIIMNGLSKAGMLDSAVKLFELI 430



 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 83/379 (21%), Positives = 155/379 (40%), Gaps = 27/379 (7%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           ++ +I    R      A +++ +M    + P+  TY   +  +      +   EV + M+
Sbjct: 91  YNGIITGLCRASRVMDAYKVLEKMVEESIVPNVFTYTILLNGLCRSNKTKLAREVFQEMK 150

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTM------- 408
           +N  KP   T  TL    S+A E+D  EAL   I + +   P       C T+       
Sbjct: 151 RNGCKPNPITYGTLIQHLSRAGEID--EALRVMIEQRSLELPTDVI--TCTTIVGGLCKA 206

Query: 409 DKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMD 467
            + + A+K   +MRQ  +RP+  TY  L   F              ++D   R    E +
Sbjct: 207 SRLDDALKFMEEMRQMGVRPNEVTYSNLVHGF----------RQHGELDRVIRF--FEEE 254

Query: 468 MARNNIQHSHISMKNLLKALGAEGMI---RELIQYFCDSKTPLGTPTYNTVLHSLVEAQE 524
            AR        +    L AL   G +   R+ ++    S       TY+ ++++   A +
Sbjct: 255 KARKGGSLEAAAYPGYLDALCKAGYLDRARKSVEELRQSGVVPDVVTYSMLINTFARAGQ 314

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
              ++E+ + M+  G+ P+  TY+ +I+     R F+ A  L+ +M   G  P  +TY +
Sbjct: 315 FDASLELLEDMRRNGVKPDVVTYSTLINVLCKERKFQDAFRLLELMEAAGSPPNVVTYNS 374

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
           ++  L   G  DE   + +++       DV+ Y+ I+    + G +D    + E +  ++
Sbjct: 375 VMDGLCKSGKMDEVHRVYEMMLKSRCSPDVVTYSIIMNGLSKAGMLDSAVKLFELIKSSR 434

Query: 645 VQPDPSTCHFVFSGYVNCG 663
             PD +    V +     G
Sbjct: 435 EGPDAAAYSMVITSLCRAG 453



 Score = 62.8 bits (151), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 86/436 (19%), Positives = 179/436 (41%), Gaps = 35/436 (8%)

Query: 183 LMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRD 242
           L+ SR V   E TY  ++         +   E+  +    Y+ ++F     +    R   
Sbjct: 44  LLASRGVVYGETTYKLVVDGLCGAGMANQALELVRELSGVYTPTVFIYNGIITGLCRASR 103

Query: 243 LKSAYETLQHMVALAMMGKLYINRTS-EGRLRSSRLDIPIPLNALPVMKVLR-------- 293
           +  AY+ L+ MV  +++  ++       G  RS++  +     A  V + ++        
Sbjct: 104 VMDAYKVLEKMVEESIVPNVFTYTILLNGLCRSNKTKL-----AREVFQEMKRNGCKPNP 158

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
            ++  +I    R      A ++M++ +SL L     T    +  +     L + ++ ++ 
Sbjct: 159 ITYGTLIQHLSRAGEIDEALRVMIEQRSLELPTDVITCTTIVGGLCKASRLDDALKFMEE 218

Query: 354 MQQNNLKPQDSTIATLSVECSKALELD-LAEALLDQISRCTNPKPFSAFLAACDTMDKP- 411
           M+Q  ++P + T + L     +  ELD +     ++ +R       +A+    D + K  
Sbjct: 219 MRQMGVRPNEVTYSNLVHGFRQHGELDRVIRFFEEEKARKGGSLEAAAYPGYLDALCKAG 278

Query: 412 --ERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
             +RA K   ++RQ  + PD+ TY +L + F              Q D++  +  +E DM
Sbjct: 279 YLDRARKSVEELRQSGVVPDVVTYSMLINTFARAG----------QFDAS--LELLE-DM 325

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQES 525
            RN ++   ++   L+  L  E   ++   L++    + +P    TYN+V+  L ++ + 
Sbjct: 326 RRNGVKPDVVTYSTLINVLCKERKFQDAFRLLELMEAAGSPPNVVTYNSVMDGLCKSGKM 385

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
                +++ M      P+  TY+I+++  S      SA  L  ++      P    Y+ +
Sbjct: 386 DEVHRVYEMMLKSRCSPDVVTYSIIMNGLSKAGMLDSAVKLFELIKSSREGPDAAAYSMV 445

Query: 586 IKILLDYGDFDEALNL 601
           I  L   G  +EA  +
Sbjct: 446 ITSLCRAGKLEEACGM 461


>gi|291622145|emb|CBJ23782.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 111/518 (21%), Positives = 222/518 (42%), Gaps = 40/518 (7%)

Query: 155 YPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHE 214
           +P +  ++  L A AK++         + M +  +  N  TY+ LL     +  L     
Sbjct: 78  FPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILLNCFCRRSQLPLALA 137

Query: 215 IWEDYIK-HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALA-----------MMGKL 262
           +    +K  Y   I +L   +  +   + +  A   +  MV +            + G  
Sbjct: 138 VLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMVEMGYKPDTVTFNTLIHGLF 197

Query: 263 YINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSL 322
             N+ SE     + +D  +     P +    +++  V++   +  +  LA  L+ +M+  
Sbjct: 198 LHNKASEA---VALIDRMVARGCQPDL----FTYGTVVNGLCKRGDIDLALSLLKKMEKG 250

Query: 323 GLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL-SVECSKALELDL 381
            ++ +   Y+  I  +   + + +  ++   M+   +KP   T  +L S  C+     D 
Sbjct: 251 KIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLISCLCNYGRWSDA 310

Query: 382 AEALLDQISRCTNPK--PFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSL 438
           +  L D I R  NP    F++ + A     K   A K+F +M Q+ + P+I TY  L + 
Sbjct: 311 SRLLSDMIERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLING 370

Query: 439 FGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQ 498
           F           M  ++D A++I  +   M   +     ++   L+K       + E ++
Sbjct: 371 F----------CMHDRLDEAQQIFTL---MVSKDCLPDVVTYNTLIKGFCKAKRVEEGME 417

Query: 499 YFCD-SKTPL--GTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCS 555
            F + S+  L   T TYNT++  L +A +   A +IFK+M + G+PP+  TY+I++D   
Sbjct: 418 LFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLC 477

Query: 556 IIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVL 615
                + A  +   + +    P   TY  +I+ +   G  ++  +L   +SL+G+  +V+
Sbjct: 478 KYGKLEKALVVFEYLQKSKMEPNIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVI 537

Query: 616 LYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCH 653
           +Y T++   C KG  +  + +  +M ++   PD S C+
Sbjct: 538 IYTTMISGFCRKGLKEEADALFREMKEDGTLPD-SGCY 574



 Score = 98.2 bits (243), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 98/449 (21%), Positives = 184/449 (40%), Gaps = 33/449 (7%)

Query: 276 RLDIPIPLNALPVMKVLRW-----SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHT 330
           R  +P+ L  L  M  L +     + S +++     +    A  L+ QM  +G +P + T
Sbjct: 129 RSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMVEMGYKPDTVT 188

Query: 331 YDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQIS 390
           ++  I  +         + ++  M     +P   T  T+     K  ++DLA +LL ++ 
Sbjct: 189 FNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKME 248

Query: 391 RC---TNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPY 446
           +     N   ++  +         + A  +F KM  K ++PD+ TY  L S   N     
Sbjct: 249 KGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLISCLCN----- 303

Query: 447 EEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEG-------MIRELIQY 499
                + +   A R+ +   DM    I  + ++  +L+ A   EG       +  E+IQ 
Sbjct: 304 -----YGRWSDASRLLS---DMIERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQR 355

Query: 500 FCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRC 559
             D        TYN++++          A +IF  M +    P+  TYN +I      + 
Sbjct: 356 SIDPNIV----TYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLIKGFCKAKR 411

Query: 560 FKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNT 619
            +    L   M + G    T+TY  LI+ L   GD D A  +   +  +G+P D++ Y+ 
Sbjct: 412 VEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSI 471

Query: 620 ILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRM 679
           +L   C+ G+++    + E + ++K++P+  T + +  G    G      +    LS++ 
Sbjct: 472 LLDGLCKYGKLEKALVVFEYLQKSKMEPNIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKG 531

Query: 680 LCEEVSTLEEKRSDFEDLILAEDSEAESR 708
           +   V       S F    L E+++A  R
Sbjct: 532 VKPNVIIYTTMISGFCRKGLKEEADALFR 560



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 75/156 (48%), Gaps = 4/156 (2%)

Query: 507 LGTP----TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKS 562
           LG P    TY+ +L+      +   A+ +  +M   G  P+  T + +++     +    
Sbjct: 110 LGIPHNHYTYSILLNCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISE 169

Query: 563 ASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILK 622
           A ALV  MV  G+ P T+T+  LI  L  +    EA+ L+D +   G   D+  Y T++ 
Sbjct: 170 AVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVN 229

Query: 623 KACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
             C++G ID+   ++++M + K++ +    + +  G
Sbjct: 230 GLCKRGDIDLALSLLKKMEKGKIEANVVIYNTIIDG 265



 Score = 58.9 bits (141), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 82/434 (18%), Positives = 172/434 (39%), Gaps = 49/434 (11%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y  ++  LCK G ++ A +L+  + E+  I   + +YN+ +    K   M  A    + M
Sbjct: 224 YGTVVNGLCKRGDIDLALSLLKKM-EKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKM 282

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYSLSIFSLRKFVWSFTRLRDL 243
           +++ +  +  TY  L+         S    +  D I +  + ++ +    + +F +   L
Sbjct: 283 ETKGIKPDVFTYNSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKL 342

Query: 244 KSAYETLQHMVALAMMGKLYI-NRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHA 302
             A +    M+  ++   +   N    G     RLD                        
Sbjct: 343 IEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLD------------------------ 378

Query: 303 CGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQ 362
                    A+Q+   M S    P   TY+  I+     + +  GME+ + M Q  L   
Sbjct: 379 --------EAQQIFTLMVSKDCLPDVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGN 430

Query: 363 DSTIATLSVECSKALELDLAEALLDQISRCTNPK---PFSAFLAACDTMDKPERAIKIFA 419
             T  TL     +A + D+A+ +  ++     P     +S  L       K E+A+ +F 
Sbjct: 431 TVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFE 490

Query: 420 KMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHI 478
            +++ K+ P+I TY ++           +  ++F  +     +  ++ ++       S  
Sbjct: 491 YLQKSKMEPNIYTYNIMIEGMCKAGKVEDGWDLFCSLS----LKGVKPNVIIYTTMISGF 546

Query: 479 SMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTC 538
             K L +   A+ + RE+ +   D   P  +  YNT++ + +   +   + E+ K+M++C
Sbjct: 547 CRKGLKEE--ADALFREMKE---DGTLP-DSGCYNTLIRARLRDGDKAASAELIKEMRSC 600

Query: 539 GIPPNAATYNIMID 552
           G   +A+T +++I+
Sbjct: 601 GFVGDASTISMVIN 614



 Score = 47.0 bits (110), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 58/310 (18%), Positives = 115/310 (37%), Gaps = 34/310 (10%)

Query: 55  TQMQIVDALC-RGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMM 113
           T   +V+ LC RG+   A  LL  +           +  I++   +        + +  M
Sbjct: 223 TYGTVVNGLCKRGDIDLALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKM 282

Query: 114 EEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHS 173
           E K I  +   Y  ++  LC  G   +AS L+  + ER  I P +  +NS + A AK   
Sbjct: 283 ETKGIKPDVFTYNSLISCLCNYGRWSDASRLLSDMIER-KINPNVVTFNSLIDAFAKEGK 341

Query: 174 MVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSL-SIFSLRK 232
           ++ A    D M  R +  N VTY  L+        L    +I+   +    L  + +   
Sbjct: 342 LIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNT 401

Query: 233 FVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVL 292
            +  F + + ++   E  + M    ++G                                
Sbjct: 402 LIKGFCKAKRVEEGMELFREMSQRGLVGNTV----------------------------- 432

Query: 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
             +++ +I    +  +  +A+++  +M S G+ P   TY   +  +     L   + V +
Sbjct: 433 --TYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFE 490

Query: 353 IMQQNNLKPQ 362
            +Q++ ++P 
Sbjct: 491 YLQKSKMEPN 500


>gi|299471515|emb|CBN80001.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 687

 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 126/580 (21%), Positives = 239/580 (41%), Gaps = 71/580 (12%)

Query: 125 YLLMMQALCKGGYLEEASNLIY-FLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDL 183
           Y   + A  KGG  +EA +L+   +    GI P +  YNS + AC+       A   L+ 
Sbjct: 148 YNSAIAACSKGGRWKEAMDLLTQMVAPTEGITPDVVTYNSAIAACSNGGRWKEAMDLLEQ 207

Query: 184 MDSRMVGKNEVTYTELL----KLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTR 239
           M ++ V  N +TY   +    K   W++ +  + E+ E      + +   +         
Sbjct: 208 MVAQGVPPNLITYNSAIGACAKGRRWEEAMDLLEEVIEQGFPPSTRTYNPV--------- 258

Query: 240 LRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDV 299
              + +  +  + + A+ ++G++  N            DIP  +           S+S V
Sbjct: 259 ---IDACAKGGRWLEAMDLLGQMLTN------------DIPADVI----------SYSSV 293

Query: 300 IHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNL 359
           I ACGR +    A  L+ QM++ G+ P+  +Y+  I A       +  +++L+ M    L
Sbjct: 294 IAACGRGRRWKEAMDLLEQMRTQGVSPNVISYNSAIDACAKGDRWKEALDLLREMTTVGL 353

Query: 360 KPQDSTIATLSVECS------KALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPER 413
            P   +  + +  C+      +ALEL L E     I+   N   +++ L AC    + E+
Sbjct: 354 VPTVISYNSATAACAVNGRWVEALEL-LKEMPAQGIA--PNTISYNSALDACAKGGQWEK 410

Query: 414 AIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM--DMAR 470
           A+K+   M      PDI ++       G        G  +          A+E+  +M  
Sbjct: 411 AVKLLRGMSTVGSDPDIISFNSAIDACG-------RGQQWE--------TAVELLREMPT 455

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHR 527
             +  + I+  + ++A G     +E +  F +  T   +P   TYN+++ +  + ++   
Sbjct: 456 AGLTPNVITYNSAIEACGRSARWQEAMGLFREMPTRGLSPNVVTYNSMIDACAKGEQWEL 515

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A+++   M   G+ P+  +YN  I+ C     ++ A  L+  M   G  P  ++Y + + 
Sbjct: 516 AVQLLTGMPARGVAPDVISYNSAIEACGKGEQWELALQLLKGMPTRGPKPDIISYNSAVT 575

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG-RIDVIEFIIEQMHQNKVQ 646
                G + EAL LL  ++  G+  + + Y   +  AC KG + DV   I+++M  +   
Sbjct: 576 ACAKSGRWREALGLLKDMATVGLTPNTVSYGAAI-HACGKGEQWDVAVRILKEMQTHGAT 634

Query: 647 PDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           P+  T           G    A++ L  L  + L  +  T
Sbjct: 635 PNLITYSAAIDACAKQGRWKEAVDLLTDLRRQGLTPDAQT 674



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 113/547 (20%), Positives = 219/547 (40%), Gaps = 55/547 (10%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y   + A   GG  +EA +L+  +  + G+ P L  YNS +GACAK      A   L+ +
Sbjct: 185 YNSAIAACSNGGRWKEAMDLLEQMVAQ-GVPPNLITYNSAIGACAKGRRWEEAMDLLEEV 243

Query: 185 DSRMVGKNEVTYTELLKL-AVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDL 243
             +    +  TY  ++   A   + L A+  + +         + S    + +  R R  
Sbjct: 244 IEQGFPPSTRTYNPVIDACAKGGRWLEAMDLLGQMLTNDIPADVISYSSVIAACGRGRRW 303

Query: 244 KSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHAC 303
           K A + L+ M            RT             +  N +        S++  I AC
Sbjct: 304 KEAMDLLEQM------------RTQG-----------VSPNVI--------SYNSAIDAC 332

Query: 304 GRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQD 363
            +      A  L+ +M ++GL P+  +Y+    A   +      +E+LK M    + P  
Sbjct: 333 AKGDRWKEALDLLREMTTVGLVPTVISYNSATAACAVNGRWVEALELLKEMPAQGIAPNT 392

Query: 364 STIATLSVECSKALELDLAEALLDQISRC-TNPK--PFSAFLAACDTMDKPERAIKIFAK 420
            +  +    C+K  + + A  LL  +S   ++P    F++ + AC    + E A+++  +
Sbjct: 393 ISYNSALDACAKGGQWEKAVKLLRGMSTVGSDPDIISFNSAIDACGRGQQWETAVELLRE 452

Query: 421 M-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVD----SAKRINAIEMDMARNNIQH 475
           M    L P++ TY       G      E   +F ++     S   +    M  A    + 
Sbjct: 453 MPTAGLTPNVITYNSAIEACGRSARWQEAMGLFREMPTRGLSPNVVTYNSMIDACAKGEQ 512

Query: 476 SHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQM 535
             ++++ LL  + A G+  ++I             +YN+ + +  + ++   A+++ K M
Sbjct: 513 WELAVQ-LLTGMPARGVAPDVI-------------SYNSAIEACGKGEQWELALQLLKGM 558

Query: 536 KTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDF 595
            T G  P+  +YN  +  C+    ++ A  L+  M   G  P T++Y A I        +
Sbjct: 559 PTRGPKPDIISYNSAVTACAKSGRWREALGLLKDMATVGLTPNTVSYGAAIHACGKGEQW 618

Query: 596 DEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFV 655
           D A+ +L  +   G   +++ Y+  +    ++GR      ++  + +  + PD  T   V
Sbjct: 619 DVAVRILKEMQTHGATPNLITYSAAIDACAKQGRWKEAVDLLTDLRRQGLTPDAQTYLTV 678

Query: 656 FSGYVNC 662
            S +  C
Sbjct: 679 ISAFQRC 685



 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 75/344 (21%), Positives = 148/344 (43%), Gaps = 23/344 (6%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           S++  I AC   +    A +L+ +M + G+ P   TY+  I A       +  M++L  M
Sbjct: 112 SYNIAIAACSNGRQWATAVRLLREMPTEGVTPDVVTYNSAIAACSKGGRWKEAMDLLTQM 171

Query: 355 --QQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPK--PFSAFLAACDTMD 409
                 + P   T  +    CS       A  LL+Q +++   P    +++ + AC    
Sbjct: 172 VAPTEGITPDVVTYNSAIAACSNGGRWKEAMDLLEQMVAQGVPPNLITYNSAIGACAKGR 231

Query: 410 KPERAIKIFAK-MRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
           + E A+ +  + + Q   P  RTY  +      ++A  + G     +D       +   M
Sbjct: 232 RWEEAMDLLEEVIEQGFPPSTRTYNPV------IDACAKGGRWLEAMD-------LLGQM 278

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQES 525
             N+I    IS  +++ A G     +E +      +T   +P   +YN+ + +  +    
Sbjct: 279 LTNDIPADVISYSSVIAACGRGRRWKEAMDLLEQMRTQGVSPNVISYNSAIDACAKGDRW 338

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
             A+++ ++M T G+ P   +YN     C++   +  A  L+  M   G  P T++Y + 
Sbjct: 339 KEALDLLREMTTVGLVPTVISYNSATAACAVNGRWVEALELLKEMPAQGIAPNTISYNSA 398

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
           +      G +++A+ LL  +S  G   D++ +N+ +  AC +G+
Sbjct: 399 LDACAKGGQWEKAVKLLRGMSTVGSDPDIISFNSAI-DACGRGQ 441



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 80/147 (54%), Gaps = 8/147 (5%)

Query: 500 FCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRC 559
           F  S   L T +YN  + +    ++   A+ + ++M T G+ P+  TYN  I  CS    
Sbjct: 101 FKISGGSLDTTSYNIAIAACSNGRQWATAVRLLREMPTEGVTPDVVTYNSAIAACSKGGR 160

Query: 560 FKSASALVSMMV--RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLY 617
           +K A  L++ MV   +G  P  +TY + I    + G + EA++LL+ +  +G+P +++ Y
Sbjct: 161 WKEAMDLLTQMVAPTEGITPDVVTYNSAIAACSNGGRWKEAMDLLEQMVAQGVPPNLITY 220

Query: 618 NTILKKACEKGR-----IDVIEFIIEQ 639
           N+ +  AC KGR     +D++E +IEQ
Sbjct: 221 NSAI-GACAKGRRWEEAMDLLEEVIEQ 246



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 66/146 (45%), Gaps = 5/146 (3%)

Query: 508 GTPTYNTVLHSLV---EAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSAS 564
           G P     L S++   + ++   A+    + K  G   +  +YNI I  CS  R + +A 
Sbjct: 71  GKPKSLVKLKSILLEAKGRDWRTALAALDEFKISGGSLDTTSYNIAIAACSNGRQWATAV 130

Query: 565 ALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLD--LVSLEGIPHDVLLYNTILK 622
            L+  M  +G  P  +TY + I      G + EA++LL   +   EGI  DV+ YN+ + 
Sbjct: 131 RLLREMPTEGVTPDVVTYNSAIAACSKGGRWKEAMDLLTQMVAPTEGITPDVVTYNSAIA 190

Query: 623 KACEKGRIDVIEFIIEQMHQNKVQPD 648
                GR      ++EQM    V P+
Sbjct: 191 ACSNGGRWKEAMDLLEQMVAQGVPPN 216


>gi|302770855|ref|XP_002968846.1| hypothetical protein SELMODRAFT_90583 [Selaginella moellendorffii]
 gi|300163351|gb|EFJ29962.1| hypothetical protein SELMODRAFT_90583 [Selaginella moellendorffii]
          Length = 538

 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 83/383 (21%), Positives = 178/383 (46%), Gaps = 27/383 (7%)

Query: 303 CGRTQNSGLAEQLMLQMQSLG--LQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLK 360
           CG    +G+A Q +  ++ L     P+   Y+G I  +     + +  +VL+ M + ++ 
Sbjct: 65  CG----AGMANQALELVRELSGVYTPTLFIYNGIITGLCRASRVMDAYKVLEKMVEESIV 120

Query: 361 PQDSTIATLSVECSKALELDLAEALLDQISR--CT-NPKPFSAFLAACDTMDKPERAIKI 417
           P   T   L     ++ +  LA  +  ++ R  C  NP  +   +       + + A+++
Sbjct: 121 PNVFTYTILLNGLCRSNKTKLAREVFQEMKRNGCKPNPITYGTLIQHLSRAGEIDEALRV 180

Query: 418 FAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHS 476
             + R  +L  D+ T     ++ G +          S++D A +      +M +  ++ +
Sbjct: 181 MIEQRSLELPTDVIT---CTTIVGGLCKA-------SRLDDALKFME---EMRQMGVRPN 227

Query: 477 HISMKNLLKALGAEGMIRELIQYFCDSKTPLG----TPTYNTVLHSLVEAQESHRAMEIF 532
            ++  NL+      G +  +I++F + K   G       Y   L +L +A    RA +  
Sbjct: 228 EVTYSNLVHGFRQHGELDRVIRFFEEEKARKGGSLEAAAYPGYLDALCKAGYLDRARKSV 287

Query: 533 KQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDY 592
           ++++  G+ P+  TY+++I+  +    F ++  L+  M R+G  P  +TY+ LI +L   
Sbjct: 288 EELRQSGVVPDVVTYSMLINTFARAGQFDASLELLEDMRRNGVKPDVVTYSTLINVLCKE 347

Query: 593 GDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTC 652
             F +A  LL+L+   G P +V+ YN+++   C+ G++D +  + E M +++  PD  T 
Sbjct: 348 RKFQDAFRLLELMEAAGSPPNVVTYNSVMDGLCKSGKMDEVHRVYEMMLKSRCSPDVVTY 407

Query: 653 HFVFSGYVNCGFHNSAMEALQVL 675
             + +G    G  +SA++  +++
Sbjct: 408 SIIMNGLSKAGMLDSAVKLFELI 430



 Score = 79.0 bits (193), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 83/379 (21%), Positives = 155/379 (40%), Gaps = 27/379 (7%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           ++ +I    R      A +++ +M    + P+  TY   +  +      +   EV + M+
Sbjct: 91  YNGIITGLCRASRVMDAYKVLEKMVEESIVPNVFTYTILLNGLCRSNKTKLAREVFQEMK 150

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTM------- 408
           +N  KP   T  TL    S+A E+D  EAL   I + +   P       C T+       
Sbjct: 151 RNGCKPNPITYGTLIQHLSRAGEID--EALRVMIEQRSLELPTDVI--TCTTIVGGLCKA 206

Query: 409 DKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMD 467
            + + A+K   +MRQ  +RP+  TY  L   F              ++D   R    E +
Sbjct: 207 SRLDDALKFMEEMRQMGVRPNEVTYSNLVHGF----------RQHGELDRVIRF--FEEE 254

Query: 468 MARNNIQHSHISMKNLLKALGAEGMI---RELIQYFCDSKTPLGTPTYNTVLHSLVEAQE 524
            AR        +    L AL   G +   R+ ++    S       TY+ ++++   A +
Sbjct: 255 KARKGGSLEAAAYPGYLDALCKAGYLDRARKSVEELRQSGVVPDVVTYSMLINTFARAGQ 314

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
              ++E+ + M+  G+ P+  TY+ +I+     R F+ A  L+ +M   G  P  +TY +
Sbjct: 315 FDASLELLEDMRRNGVKPDVVTYSTLINVLCKERKFQDAFRLLELMEAAGSPPNVVTYNS 374

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
           ++  L   G  DE   + +++       DV+ Y+ I+    + G +D    + E +  ++
Sbjct: 375 VMDGLCKSGKMDEVHRVYEMMLKSRCSPDVVTYSIIMNGLSKAGMLDSAVKLFELIKSSR 434

Query: 645 VQPDPSTCHFVFSGYVNCG 663
             PD +    V +     G
Sbjct: 435 EGPDAAAYSMVITSLCRAG 453



 Score = 62.4 bits (150), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 86/436 (19%), Positives = 179/436 (41%), Gaps = 35/436 (8%)

Query: 183 LMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRD 242
           L+ SR V   E TY  ++         +   E+  +    Y+ ++F     +    R   
Sbjct: 44  LLASRGVVYGETTYKLVVDGLCGAGMANQALELVRELSGVYTPTLFIYNGIITGLCRASR 103

Query: 243 LKSAYETLQHMVALAMMGKLYINRTS-EGRLRSSRLDIPIPLNALPVMKVLR-------- 293
           +  AY+ L+ MV  +++  ++       G  RS++  +     A  V + ++        
Sbjct: 104 VMDAYKVLEKMVEESIVPNVFTYTILLNGLCRSNKTKL-----AREVFQEMKRNGCKPNP 158

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
            ++  +I    R      A ++M++ +SL L     T    +  +     L + ++ ++ 
Sbjct: 159 ITYGTLIQHLSRAGEIDEALRVMIEQRSLELPTDVITCTTIVGGLCKASRLDDALKFMEE 218

Query: 354 MQQNNLKPQDSTIATLSVECSKALELD-LAEALLDQISRCTNPKPFSAFLAACDTMDKP- 411
           M+Q  ++P + T + L     +  ELD +     ++ +R       +A+    D + K  
Sbjct: 219 MRQMGVRPNEVTYSNLVHGFRQHGELDRVIRFFEEEKARKGGSLEAAAYPGYLDALCKAG 278

Query: 412 --ERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
             +RA K   ++RQ  + PD+ TY +L + F              Q D++  +  +E DM
Sbjct: 279 YLDRARKSVEELRQSGVVPDVVTYSMLINTFARAG----------QFDAS--LELLE-DM 325

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQES 525
            RN ++   ++   L+  L  E   ++   L++    + +P    TYN+V+  L ++ + 
Sbjct: 326 RRNGVKPDVVTYSTLINVLCKERKFQDAFRLLELMEAAGSPPNVVTYNSVMDGLCKSGKM 385

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
                +++ M      P+  TY+I+++  S      SA  L  ++      P    Y+ +
Sbjct: 386 DEVHRVYEMMLKSRCSPDVVTYSIIMNGLSKAGMLDSAVKLFELIKSSREGPDAAAYSMV 445

Query: 586 IKILLDYGDFDEALNL 601
           I  L   G  +EA  +
Sbjct: 446 ITSLCRAGKLEEACGM 461


>gi|242043130|ref|XP_002459436.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
 gi|241922813|gb|EER95957.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
          Length = 684

 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 92/374 (24%), Positives = 164/374 (43%), Gaps = 24/374 (6%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
            + VI  C        A +L   M S G  P  HTY+  +  +       + + +L  M+
Sbjct: 319 LNTVIRGCLAEGKLARATELYEMMGSKGCPPDVHTYNILMHGLCKLGRCGSAVRMLDEME 378

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKPE 412
           +    P   T +TL     +    D A A+LDQ+S      N + ++  + A     K +
Sbjct: 379 EKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMSAKGFSMNSQGYNGIIYALGKDGKLD 438

Query: 413 RAIKIFAKMR-QKLRPDIRTYE-LLFSLFGNVNAPYEEGNMFSQVDSAKRI--NAIEMDM 468
            A+++  +M+ Q  +PDI TY  +++ L  N            Q+D A+ I  N +E  +
Sbjct: 439 EAMRLVQEMKSQGCKPDICTYNTIIYHLCNN-----------DQMDEAEHIFGNLLEEGV 487

Query: 469 ARNNIQHSHISMKNLLKALGAEGM--IRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESH 526
             N I ++ +    L      EG+    E++ + C    PL   +YN ++ +L +     
Sbjct: 488 VANGITYNTLIHALLHSGRWQEGLRLANEMVLHGC----PLDVVSYNGLIKALCKEGNVD 543

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
           R+M + ++M T GI PN  +YN++I+        + A  L   M+  G  P  +TY  LI
Sbjct: 544 RSMMLLEEMMTKGIKPNNFSYNMLINELCKAGKVRDALELSKEMLNQGLTPDIVTYNTLI 603

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
             L   G    ALNLL+ +  E +  D++ YN ++   C+   +D    ++++     + 
Sbjct: 604 NGLCKVGWTHAALNLLEKLPNENVHPDIVTYNILISWHCKVRLLDDASMLLDKAVSGGIV 663

Query: 647 PDPSTCHFVFSGYV 660
           P+  T   +   +V
Sbjct: 664 PNERTWGMMVQNFV 677



 Score = 89.7 bits (221), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 82/379 (21%), Positives = 155/379 (40%), Gaps = 18/379 (4%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           +  VIHA         A  L+ +M  +G     +T++  +  +     +R    ++  M 
Sbjct: 218 YQTVIHALVAQGGVAEAATLLDEMLLMGCAADVNTFNDVVLGLCGLGHVREAARLVDRMM 277

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAI 415
            +   P   T   L     +  + D A A+L ++    N    +  +  C    K  RA 
Sbjct: 278 MHGCTPSVVTYGFLLRGLCRTRQADEAYAMLGRVPE-VNVVMLNTVIRGCLAEGKLARAT 336

Query: 416 KIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQ 474
           +++  M  K   PD+ TY +L      +        M  +++        E   A N + 
Sbjct: 337 ELYEMMGSKGCPPDVHTYNILMHGLCKLGRCGSAVRMLDEME--------EKGCAPNIVT 388

Query: 475 HSHISMKNLLKALGAEGM---IRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEI 531
           +S      LL +    GM    R ++         + +  YN ++++L +  +   AM +
Sbjct: 389 YS-----TLLHSFCRNGMWDDARAMLDQMSAKGFSMNSQGYNGIIYALGKDGKLDEAMRL 443

Query: 532 FKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLD 591
            ++MK+ G  P+  TYN +I           A  +   ++ +G     +TY  LI  LL 
Sbjct: 444 VQEMKSQGCKPDICTYNTIIYHLCNNDQMDEAEHIFGNLLEEGVVANGITYNTLIHALLH 503

Query: 592 YGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
            G + E L L + + L G P DV+ YN ++K  C++G +D    ++E+M    ++P+  +
Sbjct: 504 SGRWQEGLRLANEMVLHGCPLDVVSYNGLIKALCKEGNVDRSMMLLEEMMTKGIKPNNFS 563

Query: 652 CHFVFSGYVNCGFHNSAME 670
            + + +     G    A+E
Sbjct: 564 YNMLINELCKAGKVRDALE 582



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 65/300 (21%), Positives = 129/300 (43%), Gaps = 20/300 (6%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           ++S ++H+  R      A  ++ QM + G   +S  Y+G I A+  D  L   M +++ M
Sbjct: 388 TYSTLLHSFCRNGMWDDARAMLDQMSAKGFSMNSQGYNGIIYALGKDGKLDEAMRLVQEM 447

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQI---SRCTNPKPFSAFLAACDTMDKP 411
           +    KP   T  T+        ++D AE +   +       N   ++  + A     + 
Sbjct: 448 KSQGCKPDICTYNTIIYHLCNNDQMDEAEHIFGNLLEEGVVANGITYNTLIHALLHSGRW 507

Query: 412 ERAIKIFAKMRQKLRP-DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           +  +++  +M     P D+ +Y       G + A  +EGN+        R   +  +M  
Sbjct: 508 QEGLRLANEMVLHGCPLDVVSYN------GLIKALCKEGNV-------DRSMMLLEEMMT 554

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHR 527
             I+ ++ S   L+  L   G +R+ ++   +      TP   TYNT+++ L +   +H 
Sbjct: 555 KGIKPNNFSYNMLINELCKAGKVRDALELSKEMLNQGLTPDIVTYNTLINGLCKVGWTHA 614

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A+ + +++    + P+  TYNI+I     +R    AS L+   V  G  P   T+  +++
Sbjct: 615 ALNLLEKLPNENVHPDIVTYNILISWHCKVRLLDDASMLLDKAVSGGIVPNERTWGMMVQ 674



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 66/148 (44%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           +YN VL +L  A     A+ ++++M    +PP   T+ +       +   + A AL+  M
Sbjct: 147 SYNAVLSTLARADCHADALLLYRRMLRDRVPPTTFTFGVAARALCRLGRARDALALLRGM 206

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
            R G  P  + Y  +I  L+  G   EA  LLD + L G   DV  +N ++   C  G +
Sbjct: 207 ARHGCVPDAVLYQTVIHALVAQGGVAEAATLLDEMLLMGCAADVNTFNDVVLGLCGLGHV 266

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
                ++++M  +   P   T  F+  G
Sbjct: 267 REAARLVDRMMMHGCTPSVVTYGFLLRG 294



 Score = 47.4 bits (111), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 66/161 (40%), Gaps = 1/161 (0%)

Query: 527 RAMEIFKQM-KTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
           RA+ +  QM +   + P+  +YN ++   +   C   A  L   M+RD   P T T+   
Sbjct: 127 RALHLLDQMPRRFAVTPSFRSYNAVLSTLARADCHADALLLYRRMLRDRVPPTTFTFGVA 186

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
            + L   G   +AL LL  ++  G   D +LY T++     +G +     ++++M     
Sbjct: 187 ARALCRLGRARDALALLRGMARHGCVPDAVLYQTVIHALVAQGGVAEAATLLDEMLLMGC 246

Query: 646 QPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
             D +T + V  G    G    A   +  + M      V T
Sbjct: 247 AADVNTFNDVVLGLCGLGHVREAARLVDRMMMHGCTPSVVT 287


>gi|224086515|ref|XP_002307901.1| predicted protein [Populus trichocarpa]
 gi|222853877|gb|EEE91424.1| predicted protein [Populus trichocarpa]
          Length = 724

 Score =  103 bits (256), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 119/542 (21%), Positives = 226/542 (41%), Gaps = 31/542 (5%)

Query: 123 KCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLD 182
           + Y +++  L  G     ASN+ Y +  + G+ P    +   + A   ++ + +A L L 
Sbjct: 176 RSYNVVLDVLVVGNCPSVASNVFYDMLSK-GVSPNDYTFGLVMKALCMVNEVDNACLLLR 234

Query: 183 LMDSRMVGKNEVTYTELLK-LAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLR 241
            M       N + Y  L+  L+   +   A+  + E ++      + +    ++ F RL 
Sbjct: 235 DMTKHGCVPNSMIYQTLIDALSKRDRVDEALKLLEEMFLMGCPPDVNTFNTVIYGFCRLN 294

Query: 242 DLKSAYETLQHMVALAMM-GKLYINRTSEGRLRSSRLD-IPIPLNALPVMKVLRWSFSDV 299
            +    + +  M+        +       G  ++ R+D     L+ +P   V+   F+ +
Sbjct: 295 RVLEGAKLVDRMILKGFTPNDMTYGYLMHGLCKTCRIDEAQALLSKVPGPNVVH--FNTL 352

Query: 300 IHACGRTQNSGLAEQLML---QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQ 356
           ++  G  +N  L E       +M + G  P   T+   +  +       + +E++  M  
Sbjct: 353 VN--GFVRNGRLNEATAFVYDKMINNGYVPDVFTFSTLVNGLCKKGLFGSALELVNDMDA 410

Query: 357 NNLKPQDSTIATLSVECSKALELDLAEALLDQI---SRCTNPKPFSAFLAACDTMDKPER 413
              KP  +T   L     K  +L+ A  +L ++       N   ++A ++A     K   
Sbjct: 411 KGCKPNLNTYTILIDGFCKKGQLEEAGLILREMLTKGFSLNTVGYNALISALCKHGKIHE 470

Query: 414 AIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNN 472
           A+ +F +M  K  +PDI T+  L  +FG             +VD  +   A+  DM    
Sbjct: 471 ALDMFGEMSSKGCKPDIFTFNSL--IFG-----------LCRVDEMEDALALYRDMVLEG 517

Query: 473 IQHSHISMKNLLKALGAEGMIRELIQYFCD---SKTPLGTPTYNTVLHSLVEAQESHRAM 529
           +  + ++   L+ A    G I+E ++   D      PL   TYN ++ +L +     + +
Sbjct: 518 VIANSVTFNTLIHAFLRRGEIQEALKLVNDMLFRGCPLDEITYNGLIKALCKTGAVEKGL 577

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
            +F++M   G+ P+  T NI+I+         +A   +  M+  GF P  +TY +LI  L
Sbjct: 578 GLFEEMIRKGLTPSIITCNILINGFCTAGKVHNALEFMRDMIHRGFSPDIVTYNSLINGL 637

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649
              G   EALNL + +  EGI  D + YNT++   C +G  D   F++ +  +N   P+ 
Sbjct: 638 CKRGRIQEALNLFEKLQAEGIQPDSITYNTLICWLCREGAFDDACFLLYRGVENGFVPND 697

Query: 650 ST 651
            T
Sbjct: 698 VT 699



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 92/400 (23%), Positives = 175/400 (43%), Gaps = 27/400 (6%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           +  +I A  +      A +L+ +M  +G  P  +T++  I        +  G +++  M 
Sbjct: 248 YQTLIDALSKRDRVDEALKLLEEMFLMGCPPDVNTFNTVIYGFCRLNRVLEGAKLVDRMI 307

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDKP 411
                P D T   L     K   +D A+ALL ++     P P    F+  +       + 
Sbjct: 308 LKGFTPNDMTYGYLMHGLCKTCRIDEAQALLSKV-----PGPNVVHFNTLVNGFVRNGRL 362

Query: 412 ERAIK-IFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
             A   ++ KM      PD+ T+  L      VN   ++G   S ++    +N ++    
Sbjct: 363 NEATAFVYDKMINNGYVPDVFTFSTL------VNGLCKKGLFGSALE---LVNDMDAKGC 413

Query: 470 RNNIQHSHISMKNLLKA--LGAEGMI-RELIQYFCDSKTPLGTPTYNTVLHSLVEAQESH 526
           + N+    I +    K   L   G+I RE++         L T  YN ++ +L +  + H
Sbjct: 414 KPNLNTYTILIDGFCKKGQLEEAGLILREMLT----KGFSLNTVGYNALISALCKHGKIH 469

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
            A+++F +M + G  P+  T+N +I     +   + A AL   MV +G    ++T+  LI
Sbjct: 470 EALDMFGEMSSKGCKPDIFTFNSLIFGLCRVDEMEDALALYRDMVLEGVIANSVTFNTLI 529

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
              L  G+  EAL L++ +   G P D + YN ++K  C+ G ++    + E+M +  + 
Sbjct: 530 HAFLRRGEIQEALKLVNDMLFRGCPLDEITYNGLIKALCKTGAVEKGLGLFEEMIRKGLT 589

Query: 647 PDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           P   TC+ + +G+   G  ++A+E ++ +  R    ++ T
Sbjct: 590 PSIITCNILINGFCTAGKVHNALEFMRDMIHRGFSPDIVT 629



 Score = 66.6 bits (161), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 69/148 (46%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           +YN VL  LV       A  +F  M + G+ PN  T+ +++    ++    +A  L+  M
Sbjct: 177 SYNVVLDVLVVGNCPSVASNVFYDMLSKGVSPNDYTFGLVMKALCMVNEVDNACLLLRDM 236

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
            + G  P +M Y  LI  L      DEAL LL+ + L G P DV  +NT++   C   R+
Sbjct: 237 TKHGCVPNSMIYQTLIDALSKRDRVDEALKLLEEMFLMGCPPDVNTFNTVIYGFCRLNRV 296

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
                ++++M      P+  T  ++  G
Sbjct: 297 LEGAKLVDRMILKGFTPNDMTYGYLMHG 324



 Score = 56.2 bits (134), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 62/292 (21%), Positives = 120/292 (41%), Gaps = 27/292 (9%)

Query: 304 GRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQD 363
           G+ + +GL   ++ +M + G   ++  Y+  I A+     +   +++   M     KP  
Sbjct: 431 GQLEEAGL---ILREMLTKGFSLNTVGYNALISALCKHGKIHEALDMFGEMSSKGCKPDI 487

Query: 364 STIATLSVECSKALELDLAEALLDQI---SRCTNPKPFSAFLAACDTMDKPERAIKIFAK 420
            T  +L     +  E++ A AL   +       N   F+  + A     + + A+K+   
Sbjct: 488 FTFNSLIFGLCRVDEMEDALALYRDMVLEGVIANSVTFNTLIHAFLRRGEIQEALKLVND 547

Query: 421 MRQKLRP-DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHIS 479
           M  +  P D  TY  L        A  +   +F +             M R  +  S I+
Sbjct: 548 MLFRGCPLDEITYNGLIKALCKTGAVEKGLGLFEE-------------MIRKGLTPSIIT 594

Query: 480 MKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMK 536
              L+      G +   +++  D      +P   TYN++++ L +      A+ +F++++
Sbjct: 595 CNILINGFCTAGKVHNALEFMRDMIHRGFSPDIVTYNSLINGLCKRGRIQEALNLFEKLQ 654

Query: 537 TCGIPPNAATYNIMIDCCSIIR--CFKSASALVSMMVRDGFYPQTMTYTALI 586
             GI P++ TYN +I  C + R   F  A  L+   V +GF P  +T+  L+
Sbjct: 655 AEGIQPDSITYNTLI--CWLCREGAFDDACFLLYRGVENGFVPNDVTWNILV 704



 Score = 47.0 bits (110), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 29/118 (24%), Positives = 57/118 (48%)

Query: 542 PNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNL 601
           P+  +YN+++D   +  C   AS +   M+  G  P   T+  ++K L    + D A  L
Sbjct: 173 PSFRSYNVVLDVLVVGNCPSVASNVFYDMLSKGVSPNDYTFGLVMKALCMVNEVDNACLL 232

Query: 602 LDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
           L  ++  G   + ++Y T++    ++ R+D    ++E+M      PD +T + V  G+
Sbjct: 233 LRDMTKHGCVPNSMIYQTLIDALSKRDRVDEALKLLEEMFLMGCPPDVNTFNTVIYGF 290


>gi|299471535|emb|CBN80021.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 607

 Score =  103 bits (256), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 78/341 (22%), Positives = 154/341 (45%), Gaps = 21/341 (6%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           ++S VI AC +     +A   +++M + G+ P + +Y   I A       +  +++L+ M
Sbjct: 70  AYSAVIDACAKGGQWKMAVFFLMEMPTKGIAPDARSYGAAINACARGGRWKIALDLLREM 129

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKP 411
              ++ P      +    C+KA + ++A +L+ +++      +   +S+ ++AC    + 
Sbjct: 130 LARDVTPNVIIYNSAINSCAKAGQWEIAVSLVKEMATVGLAPDVISYSSAISACGRGGRW 189

Query: 412 ERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           E A+++F  MR   + PD+ TY       G+  A    G  + +  S  R       +  
Sbjct: 190 EEALELFEDMRTSGVAPDVITY-------GSAIAACANGGRWKEAVSLLR------KIPT 236

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHR 527
             +  + IS  +++ A   EG  +  +    + K     P   TYN  + +  +      
Sbjct: 237 VGLTPNVISYSSVITACAKEGQWKIALDLLREMKAMRLAPNIITYNAAIDACAKGGRWKE 296

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A+++ ++M T G+PP+  +Y+ +ID CS    +K A  ++  M   G  P  ++Y + I 
Sbjct: 297 AIDLLREMPTVGLPPDVVSYSSVIDACSKGDRWKEAIDILREMPTVGLSPNAISYNSAID 356

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
                G + EA  LL  +   G+   V+ YN+ +  AC KG
Sbjct: 357 ACAKGGQWKEAKGLLREMPTAGVTQRVIGYNSAI-AACAKG 396



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 116/578 (20%), Positives = 245/578 (42%), Gaps = 46/578 (7%)

Query: 66  GERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPD----PLFVMETWRMMEEKEIGLN 121
           G+  +A  LL  +     +     +  +++ CA+         F+ME    M  K I  +
Sbjct: 47  GQWEQAVRLLREMPTEGAAPDLSAYSAVIDACAKGGQWKMAVFFLME----MPTKGIAPD 102

Query: 122 NKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCL 181
            + Y   + A  +GG  + A +L+  +  R  + P + +YNS + +CAK      A   +
Sbjct: 103 ARSYGAAINACARGGRWKIALDLLREMLAR-DVTPNVIIYNSAINSCAKAGQWEIAVSLV 161

Query: 182 DLMDSRMVGKNEVTYTELL----KLAVWQKNLSAVHEIWEDY-IKHYSLSIFSLRKFVWS 236
             M +  +  + ++Y+  +    +   W++ L    E++ED      +  + +    + +
Sbjct: 162 KEMATVGLAPDVISYSSAISACGRGGRWEEAL----ELFEDMRTSGVAPDVITYGSAIAA 217

Query: 237 FTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRW-- 294
                  K A   L+ +  + +   + I+ +S     +      I L+ L  MK +R   
Sbjct: 218 CANGGRWKEAVSLLRKIPTVGLTPNV-ISYSSVITACAKEGQWKIALDLLREMKAMRLAP 276

Query: 295 ---SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVL 351
              +++  I AC +      A  L+ +M ++GL P   +Y   I A       +  +++L
Sbjct: 277 NIITYNAAIDACAKGGRWKEAIDLLREMPTVGLPPDVVSYSSVIDACSKGDRWKEAIDIL 336

Query: 352 KIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPK---PFSAFLAACDTM 408
           + M    L P   +  +    C+K  +   A+ LL ++      +    +++ +AAC   
Sbjct: 337 REMPTVGLSPNAISYNSAIDACAKGGQWKEAKGLLREMPTAGVTQRVIGYNSAIAACAKG 396

Query: 409 DKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM-- 466
           ++ + A+ +  +M     P +  +  +FS    ++A   +GN++        I A E+  
Sbjct: 397 EQWKEALALLREM-----PTVGLHTTVFSYSSAIDA-CGKGNLW--------IKAKELLR 442

Query: 467 DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQ 523
           +MA   +  + +   + + A G      E +    +  T   +P   +Y++ + +  +  
Sbjct: 443 EMATVGLAPNEVCYNSAIDACGRGDQWEEAVDLLREMPTVGLSPDVFSYSSAIAACAKGD 502

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
           +   A+ + K+M   G+ P+   YN  ID CS    +K A AL+  M   G  P  ++Y+
Sbjct: 503 QWKEALAVLKEMSAAGLAPDLICYNSAIDACSKGGRWKMAVALLGEMRAAGLTPNIISYS 562

Query: 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTIL 621
           + I   +  G + E + LL+ +   G+  DV+ Y+ ++
Sbjct: 563 SAIDACVRGGQWKEGIALLEEMRGSGVVPDVITYHALM 600



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 110/562 (19%), Positives = 216/562 (38%), Gaps = 68/562 (12%)

Query: 120 LNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANL 179
           ++ K Y + + A  +GG  E+A  L+  +    G  P L  Y++ + ACAK      A  
Sbjct: 31  IDQKSYCMAITACGRGGQWEQAVRLLREM-PTEGAAPDLSAYSAVIDACAKGGQWKMAVF 89

Query: 180 CLDLMDSRMVGKNEVTYTELLKLAV----WQKNLSAVHEIWEDYIKHYSLSIFSLRKFVW 235
            L  M ++ +  +  +Y   +        W+  L  + E+     +  + ++      + 
Sbjct: 90  FLMEMPTKGIAPDARSYGAAINACARGGRWKIALDLLREM---LARDVTPNVIIYNSAIN 146

Query: 236 SFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWS 295
           S  +    + A   ++ M  + +   +                                S
Sbjct: 147 SCAKAGQWEIAVSLVKEMATVGLAPDVI-------------------------------S 175

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           +S  I ACGR      A +L   M++ G+ P   TY   I A  +    +  + +L+ + 
Sbjct: 176 YSSAISACGRGGRWEEALELFEDMRTSGVAPDVITYGSAIAACANGGRWKEAVSLLRKIP 235

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKPE 412
              L P   + +++   C+K  +  +A  LL ++       N   ++A + AC    + +
Sbjct: 236 TVGLTPNVISYSSVITACAKEGQWKIALDLLREMKAMRLAPNIITYNAAIDACAKGGRWK 295

Query: 413 RAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAK-RINAIEMDMAR 470
            AI +  +M    L PD+ +Y  +       +   E  ++  ++ +     NAI  + A 
Sbjct: 296 EAIDLLREMPTVGLPPDVVSYSSVIDACSKGDRWKEAIDILREMPTVGLSPNAISYNSAI 355

Query: 471 NNIQHSH--ISMKNLLKALGAEGMIRELIQY-----FCDS----KTPLG----TPT---- 511
           +           K LL+ +   G+ + +I Y      C      K  L      PT    
Sbjct: 356 DACAKGGQWKEAKGLLREMPTAGVTQRVIGYNSAIAACAKGEQWKEALALLREMPTVGLH 415

Query: 512 -----YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASAL 566
                Y++ + +  +     +A E+ ++M T G+ PN   YN  ID C     ++ A  L
Sbjct: 416 TTVFSYSSAIDACGKGNLWIKAKELLREMATVGLAPNEVCYNSAIDACGRGDQWEEAVDL 475

Query: 567 VSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE 626
           +  M   G  P   +Y++ I        + EAL +L  +S  G+  D++ YN+ +    +
Sbjct: 476 LREMPTVGLSPDVFSYSSAIAACAKGDQWKEALAVLKEMSAAGLAPDLICYNSAIDACSK 535

Query: 627 KGRIDVIEFIIEQMHQNKVQPD 648
            GR  +   ++ +M    + P+
Sbjct: 536 GGRWKMAVALLGEMRAAGLTPN 557



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 109/553 (19%), Positives = 215/553 (38%), Gaps = 39/553 (7%)

Query: 59  IVDALCRGERSR-ASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKE 117
           ++DA  +G + + A   L+ +     +  A  +   +N CAR       ++  R M  ++
Sbjct: 74  VIDACAKGGQWKMAVFFLMEMPTKGIAPDARSYGAAINACARGGRWKIALDLLREMLARD 133

Query: 118 IGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHA 177
           +  N   Y   + +  K G  E A +L+  +    G+ P +  Y+S + AC +      A
Sbjct: 134 VTPNVIIYNSAINSCAKAGQWEIAVSLVKEMAT-VGLAPDVISYSSAISACGRGGRWEEA 192

Query: 178 NLCLDLMDSRMVGKNEVTYTELLKLAV----WQKNLSAVHEIWEDYIKHYSLSIFSLRKF 233
               + M +  V  + +TY   +        W++ +S + +I        + ++ S    
Sbjct: 193 LELFEDMRTSGVAPDVITYGSAIAACANGGRWKEAVSLLRKI---PTVGLTPNVISYSSV 249

Query: 234 VWSFTRLRDLKSAYETLQHMVALAMMGKLY-----INRTSEGRLRSSRLDI--PIPLNAL 286
           + +  +    K A + L+ M A+ +   +      I+  ++G      +D+   +P   L
Sbjct: 250 ITACAKEGQWKIALDLLREMKAMRLAPNIITYNAAIDACAKGGRWKEAIDLLREMPTVGL 309

Query: 287 PVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRN 346
           P   V   S+S VI AC +      A  ++ +M ++GL P++ +Y+  I A       + 
Sbjct: 310 PPDVV---SYSSVIDACSKGDRWKEAIDILREMPTVGLSPNAISYNSAIDACAKGGQWKE 366

Query: 347 GMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACD 406
              +L+ M    +  +     +    C+K  +   A ALL ++          ++ +A D
Sbjct: 367 AKGLLREMPTAGVTQRVIGYNSAIAACAKGEQWKEALALLREMPTVGLHTTVFSYSSAID 426

Query: 407 TMDKPERAIKIFAKMRQ----KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQ---VDSAK 459
              K    IK    +R+     L P+   Y       G  +   E  ++  +   V  + 
Sbjct: 427 ACGKGNLWIKAKELLREMATVGLAPNEVCYNSAIDACGRGDQWEEAVDLLREMPTVGLSP 486

Query: 460 RINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSL 519
            + +    +A             +LK + A G+  +LI              YN+ + + 
Sbjct: 487 DVFSYSSAIAACAKGDQWKEALAVLKEMSAAGLAPDLI-------------CYNSAIDAC 533

Query: 520 VEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQT 579
            +      A+ +  +M+  G+ PN  +Y+  ID C     +K   AL+  M   G  P  
Sbjct: 534 SKGGRWKMAVALLGEMRAAGLTPNIISYSSAIDACVRGGQWKEGIALLEEMRGSGVVPDV 593

Query: 580 MTYTALIKILLDY 592
           +TY AL+     Y
Sbjct: 594 ITYHALMVTCAKY 606



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 80/370 (21%), Positives = 146/370 (39%), Gaps = 51/370 (13%)

Query: 262 LYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQS 321
           LY +R+ + R     +D    +  LP   + + S+   I ACGR      A +L+ +M +
Sbjct: 5   LYDSRSGDWRKALRAVD---GMKKLPGWLIDQKSYCMAITACGRGGQWEQAVRLLREMPT 61

Query: 322 LGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDL 381
            G  P    Y   I A       +  +  L  M    + P                    
Sbjct: 62  EGAAPDLSAYSAVIDACAKGGQWKMAVFFLMEMPTKGIAP-------------------- 101

Query: 382 AEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGN 441
                       + + + A + AC    + + A+ +   +R+ L  D+    ++++    
Sbjct: 102 ------------DARSYGAAINACARGGRWKIALDL---LREMLARDVTPNVIIYN--SA 144

Query: 442 VNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFC 501
           +N+  + G     V   K       +MA   +    IS  + + A G  G   E ++ F 
Sbjct: 145 INSCAKAGQWEIAVSLVK-------EMATVGLAPDVISYSSAISACGRGGRWEEALELFE 197

Query: 502 DSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIR 558
           D +T    P   TY + + +         A+ + +++ T G+ PN  +Y+ +I  C+   
Sbjct: 198 DMRTSGVAPDVITYGSAIAACANGGRWKEAVSLLRKIPTVGLTPNVISYSSVITACAKEG 257

Query: 559 CFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYN 618
            +K A  L+  M      P  +TY A I      G + EA++LL  +   G+P DV+ Y+
Sbjct: 258 QWKIALDLLREMKAMRLAPNIITYNAAIDACAKGGRWKEAIDLLREMPTVGLPPDVVSYS 317

Query: 619 TILKKACEKG 628
           +++  AC KG
Sbjct: 318 SVI-DACSKG 326



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/162 (22%), Positives = 78/162 (48%)

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           YN+ ++S  +A +   A+ + K+M T G+ P+  +Y+  I  C     ++ A  L   M 
Sbjct: 141 YNSAINSCAKAGQWEIAVSLVKEMATVGLAPDVISYSSAISACGRGGRWEEALELFEDMR 200

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
             G  P  +TY + I    + G + EA++LL  +   G+  +V+ Y++++    ++G+  
Sbjct: 201 TSGVAPDVITYGSAIAACANGGRWKEAVSLLRKIPTVGLTPNVISYSSVITACAKEGQWK 260

Query: 632 VIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           +   ++ +M   ++ P+  T +         G    A++ L+
Sbjct: 261 IALDLLREMKAMRLAPNIITYNAAIDACAKGGRWKEAIDLLR 302



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/191 (22%), Positives = 85/191 (44%), Gaps = 9/191 (4%)

Query: 485 KALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNA 544
           KAL A   +++L  +  D K+      Y   + +     +  +A+ + ++M T G  P+ 
Sbjct: 15  KALRAVDGMKKLPGWLIDQKS------YCMAITACGRGGQWEQAVRLLREMPTEGAAPDL 68

Query: 545 ATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDL 604
           + Y+ +ID C+    +K A   +  M   G  P   +Y A I      G +  AL+LL  
Sbjct: 69  SAYSAVIDACAKGGQWKMAVFFLMEMPTKGIAPDARSYGAAINACARGGRWKIALDLLRE 128

Query: 605 VSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGF 664
           +    +  +V++YN+ +    + G+ ++   ++++M    + PD  +     S    CG 
Sbjct: 129 MLARDVTPNVIIYNSAINSCAKAGQWEIAVSLVKEMATVGLAPDVISYSSAISA---CGR 185

Query: 665 HNSAMEALQVL 675
                EAL++ 
Sbjct: 186 GGRWEEALELF 196



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/193 (22%), Positives = 82/193 (42%), Gaps = 3/193 (1%)

Query: 484 LKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGI 540
           + A G  G   + ++   +  T    P    Y+ V+ +  +  +   A+    +M T GI
Sbjct: 40  ITACGRGGQWEQAVRLLREMPTEGAAPDLSAYSAVIDACAKGGQWKMAVFFLMEMPTKGI 99

Query: 541 PPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALN 600
            P+A +Y   I+ C+    +K A  L+  M+     P  + Y + I      G ++ A++
Sbjct: 100 APDARSYGAAINACARGGRWKIALDLLREMLARDVTPNVIIYNSAINSCAKAGQWEIAVS 159

Query: 601 LLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYV 660
           L+  ++  G+  DV+ Y++ +      GR +    + E M  + V PD  T     +   
Sbjct: 160 LVKEMATVGLAPDVISYSSAISACGRGGRWEEALELFEDMRTSGVAPDVITYGSAIAACA 219

Query: 661 NCGFHNSAMEALQ 673
           N G    A+  L+
Sbjct: 220 NGGRWKEAVSLLR 232


>gi|115446945|ref|NP_001047252.1| Os02g0582300 [Oryza sativa Japonica Group]
 gi|50253069|dbj|BAD29317.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536783|dbj|BAF09166.1| Os02g0582300 [Oryza sativa Japonica Group]
          Length = 845

 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 90/399 (22%), Positives = 168/399 (42%), Gaps = 34/399 (8%)

Query: 283 LNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQM-QSLGLQPSSHTYDGFIRAIVSD 341
           L+  P+  +    F+ ++    R   + LA +L   M +     P++ TY+  IR++   
Sbjct: 107 LSPPPLRPLFDRPFASLLAHLSRFALAPLALRLFAHMHRHAPPAPTAPTYNAVIRSLCRR 166

Query: 342 RGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI---SRCTNPKPF 398
             L   +  L +M ++  +P   T  +L V   +  ++D+A  L D++       +   +
Sbjct: 167 ADLARALRYLSLMVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSY 226

Query: 399 SAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMF------ 452
           +  +       + + A+++F +M Q   PD+  Y  L     N     EEG +       
Sbjct: 227 ATLIEGLCEAGRIDEAVELFGEMDQ---PDMHMYAALVKGLCNAERG-EEGLLMLRRMKE 282

Query: 453 -----------SQVD------SAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRE 495
                      + VD       AK    +  +M    +    ++   ++ A   EG + +
Sbjct: 283 LGWRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSD 342

Query: 496 LIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID 552
            ++     K     P   TYN ++       + H+AM +  +M+ CG+ P+A TYN++I 
Sbjct: 343 ALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIR 402

Query: 553 CCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPH 612
              I    +SA  L+ +M  DG      TY ALI  L   G  D+A +L D +   GI  
Sbjct: 403 GQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKP 462

Query: 613 DVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
           + + +N+++   C+ G+ D+    +E+M      PD  T
Sbjct: 463 NAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYT 501



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 75/318 (23%), Positives = 128/318 (40%), Gaps = 19/318 (5%)

Query: 363 DSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDKPERAIKIF 418
           D   A+L    S+     LA  L   + R   P P    ++A + +        RA++  
Sbjct: 117 DRPFASLLAHLSRFALAPLALRLFAHMHRHAPPAPTAPTYNAVIRSLCRRADLARALRYL 176

Query: 419 AKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSH 477
           + M R   RPD  T+  L   +   N          QVD A+ +      M         
Sbjct: 177 SLMVRSGWRPDAYTFNSLIVGYCRTN----------QVDVARDLFD---KMPLRGFAQDV 223

Query: 478 ISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKT 537
           +S   L++ L   G I E ++ F +   P     Y  ++  L  A+     + + ++MK 
Sbjct: 224 VSYATLIEGLCEAGRIDEAVELFGEMDQP-DMHMYAALVKGLCNAERGEEGLLMLRRMKE 282

Query: 538 CGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDE 597
            G  P+   Y  ++D     R  K A  ++  M   G  P  +T TA+I      G   +
Sbjct: 283 LGWRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSD 342

Query: 598 ALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFS 657
           AL +L+L+ L G   +V  YN +++  C +G++     ++ +M    V PD  T + +  
Sbjct: 343 ALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIR 402

Query: 658 GYVNCGFHNSAMEALQVL 675
           G    G   SA   L+++
Sbjct: 403 GQCIDGHIESAFRLLRLM 420



 Score = 70.5 bits (171), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 80/371 (21%), Positives = 152/371 (40%), Gaps = 30/371 (8%)

Query: 315 LMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDST-IATLSVEC 373
           ++ +M+ LG +PS+  Y   +     +R  +   E+L+ M +  L P   T  A ++  C
Sbjct: 276 MLRRMKELGWRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYC 335

Query: 374 SKALELDLAEAL-LDQISRC-TNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIR 430
            +    D    L L ++  C  N   ++A +       K  +A+ +  KMR   + PD  
Sbjct: 336 KEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAV 395

Query: 431 TYELLFS---LFGNVNAPYE-------EGNMFSQVDSAKRINAIEMD------------M 468
           TY LL     + G++ + +        +G +  Q      INA+  D            +
Sbjct: 396 TYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSL 455

Query: 469 ARNNIQHSHISMKNLLKAL---GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQES 525
               I+ + ++  +L+  L   G   +  + ++    +     T TY++ +  L + + S
Sbjct: 456 ETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGS 515

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
              +    +M    + P+   Y I+I      R +   +     MV  G  P  +TYT  
Sbjct: 516 QEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTS 575

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           ++     G  +EA N+L  +S  G+  D + YNT++      G+ D    I++QM     
Sbjct: 576 MRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVAS 635

Query: 646 QPDPSTCHFVF 656
            P+  T +F+ 
Sbjct: 636 VPNQFT-YFIL 645



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 101/490 (20%), Positives = 184/490 (37%), Gaps = 66/490 (13%)

Query: 239 RLRDLKSAYETLQHM-----VALAMMGKLYINR-TSEGRLRSSRLDIPIPLNALPVMKVL 292
           R R  K A E LQ M         +     IN    EGR+  +       L  L +MK L
Sbjct: 301 RERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDA-------LRVLELMK-L 352

Query: 293 R------WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRN 346
           R      W+++ ++           A  L+ +M++ G+ P + TY+  IR    D  + +
Sbjct: 353 RGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCIDGHIES 412

Query: 347 GMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI-SRCTNPKP--FSAFLA 403
              +L++M+ + L     T   L     K    D A +L D + +R   P    F++ + 
Sbjct: 413 AFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLIN 472

Query: 404 ACDTMDKPERAIKIFAKM-RQKLRPDIRTY----ELLFSLFGNVNAPYEEGNMFSQVDSA 458
                 K + A K   KM      PD  TY    E L  + G+       G M  +    
Sbjct: 473 GLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKP 532

Query: 459 KRINAIEM------------------DMARNNIQHSHISMKNLLKALGAEGMIRE---LI 497
             +N   +                  +M  +      ++    ++A   EG + E   ++
Sbjct: 533 STVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVL 592

Query: 498 QYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSII 557
                +   + T  YNT++       ++  A+ I KQM +    PN  TY I++     +
Sbjct: 593 MEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRM 652

Query: 558 RCFK-----------------SASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALN 600
           R  +                     L  +M ++ F P + TY+++++   + G  +EA +
Sbjct: 653 RLVEDVLPLTPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATS 712

Query: 601 LLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYV 660
           L+ L+  + I  +  +Y  ++   C+  R      ++  M Q+   P   +   + SG +
Sbjct: 713 LVSLMKEDSISLNEDIYTALVTCFCKSKRYLDAWVLVCSMIQHGFIPQLMSYQHLLSGLI 772

Query: 661 NCGFHNSAME 670
             G  + A E
Sbjct: 773 CEGQTDKAKE 782



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 81/421 (19%), Positives = 156/421 (37%), Gaps = 81/421 (19%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A +L+  M+  GL    +TY+  I A+  D        +   ++   +KP   T  +L  
Sbjct: 413 AFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLIN 472

Query: 372 ECSKALELDLAEALLDQI--SRCT-NPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRP 427
              K+ + D+A   L+++  + CT +   +S+F+     M   +  +    +M QK ++P
Sbjct: 473 GLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKP 532

Query: 428 DI-------------RTYELLFSLFGNVNAPYEEGNMFSQVDSAK------RINAIE--- 465
                          R Y L+   +G + +     ++ +   S +      R+N  E   
Sbjct: 533 STVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVL 592

Query: 466 MDMARNNIQ------------HSHISMKN----LLKALGAEGMIRELIQYFCDSK----- 504
           M+M++N +             H+ I   +    +LK + +   +     YF   +     
Sbjct: 593 MEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRM 652

Query: 505 ---------TPLG-------------------------TPTYNTVLHSLVEAQESHRAME 530
                    TP G                         + TY+++L    E   +  A  
Sbjct: 653 RLVEDVLPLTPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATS 712

Query: 531 IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590
           +   MK   I  N   Y  ++ C    + +  A  LV  M++ GF PQ M+Y  L+  L+
Sbjct: 713 LVSLMKEDSISLNEDIYTALVTCFCKSKRYLDAWVLVCSMIQHGFIPQLMSYQHLLSGLI 772

Query: 591 DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650
             G  D+A  +      +    D +++  I+    +KG  D+   +I  + +   +P   
Sbjct: 773 CEGQTDKAKEIFMNSRWKDYSPDEIVWKVIIDGLIKKGHSDISREMIIMLERMNCRPSHQ 832

Query: 651 T 651
           T
Sbjct: 833 T 833


>gi|125540047|gb|EAY86442.1| hypothetical protein OsI_07823 [Oryza sativa Indica Group]
          Length = 703

 Score =  102 bits (255), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 81/351 (23%), Positives = 150/351 (42%), Gaps = 33/351 (9%)

Query: 330 TYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI 389
           TY+  IR++     L + +  L +M ++  +P   T  +L V   +  ++D+A  L D++
Sbjct: 13  TYNAVIRSLCRRADLASALRYLSLMVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKM 72

Query: 390 ---SRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPY 446
                  +   ++A +       + + A+++F +M Q   PD+  Y  L           
Sbjct: 73  PLRGFAQDVVSYAALIEGFCETGRIDEAVELFGEMDQ---PDMHMYAALVKGLCKAGRG- 128

Query: 447 EEGNMF-----------------SQVD------SAKRINAIEMDMARNNIQHSHISMKNL 483
           EEG +                  + VD       AK    +  +M    +    ++   +
Sbjct: 129 EEGLLMLRRMKELGWRPSTRAYAAVVDFRCWERKAKEAEEMLQEMFEKGLAPCVVTCTAV 188

Query: 484 LKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGI 540
           + A   EG + + ++     K     P   TYN ++       + H+AM +  +M+ CG+
Sbjct: 189 INAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMALLNKMRVCGV 248

Query: 541 PPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALN 600
            P+A TYN++I    I    +SA  L+ +M  DG      TY ALI  L   G  D+A +
Sbjct: 249 NPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACS 308

Query: 601 LLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
           L D +   GI  + + +N+++   C+ G++D+    +E+M      PD  T
Sbjct: 309 LFDSLETRGIKPNAVTFNSLINGLCKSGKVDIAWKFLEKMVSAGCTPDTYT 359



 Score = 75.9 bits (185), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 60/255 (23%), Positives = 104/255 (40%), Gaps = 14/255 (5%)

Query: 421 MRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISM 480
           +R   RPD  T+  L   +   N          QVD A+ +      M         +S 
Sbjct: 38  VRSGWRPDAYTFNSLIVGYCRTN----------QVDVARDLFD---KMPLRGFAQDVVSY 84

Query: 481 KNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGI 540
             L++     G I E ++ F +   P     Y  ++  L +A      + + ++MK  G 
Sbjct: 85  AALIEGFCETGRIDEAVELFGEMDQP-DMHMYAALVKGLCKAGRGEEGLLMLRRMKELGW 143

Query: 541 PPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALN 600
            P+   Y  ++D     R  K A  ++  M   G  P  +T TA+I      G   +AL 
Sbjct: 144 RPSTRAYAAVVDFRCWERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALR 203

Query: 601 LLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYV 660
           +L+L+ L G   +V  YN +++  C +G++     ++ +M    V PD  T + +  G  
Sbjct: 204 VLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMALLNKMRVCGVNPDAVTYNLLIRGQC 263

Query: 661 NCGFHNSAMEALQVL 675
             G   SA   L+++
Sbjct: 264 IDGHIESAFRLLRLM 278



 Score = 72.4 bits (176), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 88/434 (20%), Positives = 173/434 (39%), Gaps = 66/434 (15%)

Query: 252 HMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRW-----SFSDVIHACGRT 306
           HM A  + G     R  EG L   R            MK L W     +++ V+      
Sbjct: 113 HMYAALVKGLCKAGRGEEGLLMLRR------------MKELGWRPSTRAYAAVVDFRCWE 160

Query: 307 QNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTI 366
           + +  AE+++ +M   GL P   T    I A   +  + + + VL++M+    KP     
Sbjct: 161 RKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKP----- 215

Query: 367 ATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KL 425
                                      N   ++A +       K  +A+ +  KMR   +
Sbjct: 216 ---------------------------NVWTYNALVQGFCNEGKVHKAMALLNKMRVCGV 248

Query: 426 RPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLK 485
            PD  TY LL      +     +G+    ++SA R+  +   M  + +     +   L+ 
Sbjct: 249 NPDAVTYNLL------IRGQCIDGH----IESAFRLLRL---MEGDGLIADQYTYNALIN 295

Query: 486 ALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPP 542
           AL  +G   +    F   +T    P   T+N++++ L ++ +   A +  ++M + G  P
Sbjct: 296 ALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKVDIAWKFLEKMVSAGCTP 355

Query: 543 NAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL 602
           +  TY+  I+    ++  +   + +  M++    P T+ YT +I  LL   ++       
Sbjct: 356 DTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTW 415

Query: 603 DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNC 662
             +   G   DV+ Y T ++  C +GR++  E ++ +M +N V  D    + +  G+ + 
Sbjct: 416 GEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASI 475

Query: 663 GFHNSAMEALQVLS 676
           G  + A+  L+ ++
Sbjct: 476 GQTDHAVSILKQMT 489



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 67/372 (18%), Positives = 145/372 (38%), Gaps = 19/372 (5%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +F+ +I+   ++    +A + + +M S G  P ++TY  FI  +   +G + G+  +  M
Sbjct: 324 TFNSLINGLCKSGKVDIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEM 383

Query: 355 QQNNLKPQDSTIATLSVECSKALELDL-AEALLDQISRCTNPK--PFSAFLAACDTMDKP 411
            Q ++KP       +  +  K     L A    + +S   NP    ++  + A     + 
Sbjct: 384 LQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRL 443

Query: 412 ERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI--------- 461
             A  +  +M +  +  D   Y  L     ++       ++  Q+ S   +         
Sbjct: 444 NEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFIL 503

Query: 462 --NAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSL 519
             + + M +  + +  +   +   ++     G+   + +   +   P  + TY+++L   
Sbjct: 504 LRHLVRMRLVEDVLPLTPAGVWKAIELTDVFGLFDVMKK---NEFLP-NSGTYSSILEGF 559

Query: 520 VEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQT 579
            E   +  A  +   MK   I  N   Y  ++ C    + +  A  LV  M++ GF P  
Sbjct: 560 SEDGRTEEATSLVSLMKEDSISLNEDIYTALVTCFCKSKRYLDAWVLVCSMIQHGFIPHL 619

Query: 580 MTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQ 639
           M+Y  L+  L+  G  D+A  +      +    D +++  I+    +KG  D+   +I  
Sbjct: 620 MSYQHLLSGLICEGQTDKAKEIFMNSRWKDYSPDEIVWKVIIDGLIKKGHSDISREMIIM 679

Query: 640 MHQNKVQPDPST 651
           + +   +P   T
Sbjct: 680 LERMNCRPSHQT 691



 Score = 58.9 bits (141), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 85/417 (20%), Positives = 162/417 (38%), Gaps = 49/417 (11%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A +L+  M+  GL    +TY+  I A+  D        +   ++   +KP   T  +L  
Sbjct: 271 AFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLIN 330

Query: 372 ECSKALELDLAEALLDQI--SRCT-NPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRP 427
              K+ ++D+A   L+++  + CT +   +S+F+     M   +  +    +M QK ++P
Sbjct: 331 GLCKSGKVDIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKP 390

Query: 428 DI-------------RTYELLFSLFGNVNAPYEEGNMFSQVDSAK------RINAIE--- 465
                          R Y L+   +G + +     ++ +   S +      R+N  E   
Sbjct: 391 STVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVL 450

Query: 466 MDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLV-- 520
           M+M++N +    ++   L+    + G     +       +    P   TY  +L  LV  
Sbjct: 451 MEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRM 510

Query: 521 ---------------EAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASA 565
                          +A E      +F  MK     PN+ TY+ +++  S     + A++
Sbjct: 511 RLVEDVLPLTPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATS 570

Query: 566 LVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL-DLVSLEGIPHDVLLYNTILKKA 624
           LVS+M  D        YTAL+        + +A  L+  ++    IPH ++ Y  +L   
Sbjct: 571 LVSLMKEDSISLNEDIYTALVTCFCKSKRYLDAWVLVCSMIQHGFIPH-LMSYQHLLSGL 629

Query: 625 CEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLC 681
             +G+ D  + I          PD      +  G +  G  + + E + +L  RM C
Sbjct: 630 ICEGQTDKAKEIFMNSRWKDYSPDEIVWKVIIDGLIKKGHSDISREMIIMLE-RMNC 685



 Score = 40.8 bits (94), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 102/470 (21%), Positives = 183/470 (38%), Gaps = 76/470 (16%)

Query: 111 RMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAK 170
           R+ME   +  +   Y  ++ ALCK G  ++A +L   L  R GI P    +NS +    K
Sbjct: 276 RLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETR-GIKPNAVTFNSLINGLCK 334

Query: 171 LHSMVHANLCLDLMDSRMVGKNEVTYT----ELLKLAVWQKNLSAVHEIWEDYIK----H 222
              +  A   L+ M S     +  TY+     L K+   Q+ LS + E+ +  +K    +
Sbjct: 335 SGKVDIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVN 394

Query: 223 YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTS------EGRL-RSS 275
           Y++ I  L K        R+      T   MV+      +    TS      EGRL  + 
Sbjct: 395 YTIVIHKLLK-------ERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAE 447

Query: 276 RLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFI 335
            + + +  N + V  +   +  D   + G+T +   A  ++ QM S+   P+  TY   +
Sbjct: 448 NVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDH---AVSILKQMTSVASVPNQFTYFILL 504

Query: 336 RAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR---C 392
           R +V  R + + +          L P             KA+EL     L D + +    
Sbjct: 505 RHLVRMRLVEDVLP---------LTPAG---------VWKAIELTDVFGLFDVMKKNEFL 546

Query: 393 TNPKPFSAFLAACDTMDKPERAIKIFAKMRQ---KLRPDIRTYELLFSLFGNVNAPYEEG 449
            N   +S+ L       + E A  + + M++    L  DI  Y  L + F          
Sbjct: 547 PNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDI--YTALVTCF---------- 594

Query: 450 NMFSQVDSAKRINAIEMDMARNNIQHSHI----SMKNLLKALGAEGMIRELIQYFCDSKT 505
                  S + ++A    +  + IQH  I    S ++LL  L  EG   +  + F +S+ 
Sbjct: 595 -----CKSKRYLDA--WVLVCSMIQHGFIPHLMSYQHLLSGLICEGQTDKAKEIFMNSRW 647

Query: 506 PLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID 552
              +P    +  ++  L++   S  + E+   ++     P+  TY ++ +
Sbjct: 648 KDYSPDEIVWKVIIDGLIKKGHSDISREMIIMLERMNCRPSHQTYAMLTE 697


>gi|297605196|ref|NP_001056837.2| Os06g0152500 [Oryza sativa Japonica Group]
 gi|255676726|dbj|BAF18751.2| Os06g0152500 [Oryza sativa Japonica Group]
          Length = 717

 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 84/357 (23%), Positives = 156/357 (43%), Gaps = 15/357 (4%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A + +  M   G+ P+ +TY+  +RA+ +   L   + V+  M+     P   T  TL  
Sbjct: 136 ARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVA 195

Query: 372 ECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDKPERAIKIFAKM-RQKLR 426
              +A ELD AE ++  +    N KP    F++ +       + E A K+F +M R+ L 
Sbjct: 196 AFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLA 255

Query: 427 PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKA 486
           PD+ +Y  L S +  V   +E   +FS++     +  +   +   ++ H+     NL +A
Sbjct: 256 PDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDV---VTFTSLIHATCKAGNLEQA 312

Query: 487 LGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAAT 546
           +     +RE           +   T+  ++    +      A+   ++M+ CGI P+   
Sbjct: 313 VALVAQMRE-------RGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVC 365

Query: 547 YNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVS 606
           YN +I+    +     A  L+  M      P  +TY+ +I      G+ D A  L   + 
Sbjct: 366 YNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKML 425

Query: 607 LEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
            +G+  D + Y+++++  CE+ R++    + E M Q  VQPD  T   +  G+   G
Sbjct: 426 KKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEG 482



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/262 (25%), Positives = 117/262 (44%), Gaps = 14/262 (5%)

Query: 412 ERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAI--EMDM 468
           E A+ +   MR     P+  TY  L + F              ++D A+R+ ++  E   
Sbjct: 169 EEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAG----------ELDGAERVVSLMREEGN 218

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRA 528
           A+ N+   +  +  L KA   EG  +   +   +   P    +YNT+L    +    H +
Sbjct: 219 AKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAP-DVVSYNTLLSGYCKVGCLHES 277

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
           + +F +M   G+ P+  T+  +I         + A ALV+ M   G     +T+TALI  
Sbjct: 278 LAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDG 337

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
               G  D+AL  ++ +   GI   V+ YN ++   C+ GR+D+   +I +M   +V+PD
Sbjct: 338 FCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPD 397

Query: 649 PSTCHFVFSGYVNCGFHNSAME 670
             T   + SGY   G  +SA +
Sbjct: 398 VVTYSTIISGYCKVGNLDSAFQ 419



 Score = 60.5 bits (145), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 92/455 (20%), Positives = 171/455 (37%), Gaps = 62/455 (13%)

Query: 112 MMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKL 171
           M EE     N   +  M+  LCK G +E A  +   +  R G+ P +  YN+ L    K+
Sbjct: 213 MREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEM-VREGLAPDVVSYNTLLSGYCKV 271

Query: 172 HSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNL-SAVHEIWEDYIKHYSLSIFSL 230
             +  +      M  R +  + VT+T L+       NL  AV  + +   +   ++  + 
Sbjct: 272 GCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTF 331

Query: 231 RKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYI-NRTSEGRLRSSRLDIPIPLNALPVM 289
              +  F +   L  A   ++ M    +   +   N    G  +  R+D+   L  +  M
Sbjct: 332 TALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLAREL--IREM 389

Query: 290 KVLR-----WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGL 344
           +  R      ++S +I    +  N   A QL  +M   G+ P + TY   IR +  ++ L
Sbjct: 390 EAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRL 449

Query: 345 RNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAA 404
            +  E+ + M Q  ++P + T  TL     K   ++ A +L D++               
Sbjct: 450 NDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEM--------------- 494

Query: 405 CDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAI 464
                           +R+ + PD+ TY +L +         E   +  ++         
Sbjct: 495 ----------------IRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKL--------Y 530

Query: 465 EMDMARNNIQHSHI----------SMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPT 511
             D   +NI++  +          S+  LLK    +G+++E   + Q   D    L    
Sbjct: 531 HEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSV 590

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAAT 546
           Y+ ++H         +A+   KQM   G  PN+ +
Sbjct: 591 YSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTS 625



 Score = 59.7 bits (143), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 109/603 (18%), Positives = 220/603 (36%), Gaps = 104/603 (17%)

Query: 118 IGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHA 177
           +  N   Y ++++ALC  G LEEA  ++  +    G  P    YN+ + A  +   +  A
Sbjct: 148 VAPNVYTYNILVRALCARGRLEEAVGVVGDM-RGAGCAPNAVTYNTLVAAFCRAGELDGA 206

Query: 178 NLCLDLMDSRMVGK-NEVTYTELLKLAVWQKNLSAVHEIWEDYIKH-YSLSIFSLRKFVW 235
              + LM      K N VT+  ++        +    +++++ ++   +  + S    + 
Sbjct: 207 ERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLS 266

Query: 236 SFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWS 295
            + ++  L  +      M    ++  +                                +
Sbjct: 267 GYCKVGCLHESLAVFSEMTQRGLVPDVV-------------------------------T 295

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           F+ +IHA  +  N   A  L+ QM+  GL+ +  T+   I        L + +  ++ M+
Sbjct: 296 FTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMR 355

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAI 415
           +  ++P       L     K   +DLA  L+ ++                          
Sbjct: 356 KCGIQPSVVCYNALINGYCKLGRMDLARELIREMEA------------------------ 391

Query: 416 KIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQH 475
                  ++++PD+ TY  + S +  V      GN+    DSA ++N     M +  +  
Sbjct: 392 -------KRVKPDVVTYSTIISGYCKV------GNL----DSAFQLN---QKMLKKGVLP 431

Query: 476 SHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP----TYNTVLHSLVEAQESHRAMEI 531
             I+  +L++ L  E  + +  + F ++   LG      TY T++    +     +A+ +
Sbjct: 432 DAITYSSLIRGLCEEKRLNDACELF-ENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSL 490

Query: 532 FKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLD 591
             +M   G+ P+  TY+++I+  S     K A  L+  +  +   P  + Y AL+ +   
Sbjct: 491 HDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALM-LCCS 549

Query: 592 YGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
             +F   + L                   LK  C KG +   + + + M     + D S 
Sbjct: 550 KAEFKSVVAL-------------------LKGFCMKGLMKEADKVYQSMLDRNWKLDGSV 590

Query: 652 CHFVFSGYVNCGFHNSAME-ALQVLSMRMLCEEVSTLEEKRSDFEDLILAEDSEAESRIL 710
              +  G+   G    A+    Q+L         ST+   R  FE+ ++ E   A   +L
Sbjct: 591 YSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMVVEADNAIQDLL 650

Query: 711 QFC 713
             C
Sbjct: 651 TCC 653


>gi|8493580|gb|AAF75803.1|AC011000_6 Contains weak similarity to leaf protein from Ipomea nil gb|D85101
           and contains a RepB PF|01051 protein and multiple PPR
           PF|01535 repeats [Arabidopsis thaliana]
          Length = 613

 Score =  102 bits (254), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 87/366 (23%), Positives = 168/366 (45%), Gaps = 22/366 (6%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           +++  V++   +  +  LA  L+ +M+   ++     Y   I A+ + + + + + +   
Sbjct: 205 FTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTE 264

Query: 354 MQQNNLKPQDSTIATL-SVECSKALELDLAEALLDQISRCTNPK--PFSAFLAACDTMDK 410
           M    ++P   T  +L    C+     D +  L D I R  NP    FSA + A     K
Sbjct: 265 MDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGK 324

Query: 411 PERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
              A K++ +M ++ + PDI TY  L + F           M  ++D AK +   E+ ++
Sbjct: 325 LVEAEKLYDEMIKRSIDPDIFTYSSLINGFC----------MHDRLDEAKHM--FELMIS 372

Query: 470 RN---NIQHSHISMKNLLKALGAE-GMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQES 525
           ++   N+   +  +K   KA   E GM  EL +          T TYNT++  L +A + 
Sbjct: 373 KDCFPNVVTYNTLIKGFCKAKRVEEGM--ELFREMSQRGLVGNTVTYNTLIQGLFQAGDC 430

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
             A +IFK+M + G+PP+  TY+I++D        + A  +   + +    P   TY  +
Sbjct: 431 DMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIM 490

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           I+ +   G  ++  +L   +SL+G+  +V++Y T++   C KG  +  + +  +M ++  
Sbjct: 491 IEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGT 550

Query: 646 QPDPST 651
            P+  T
Sbjct: 551 LPNSGT 556



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 94/445 (21%), Positives = 181/445 (40%), Gaps = 25/445 (5%)

Query: 276 RLDIPIPLNALPVMKVLRW-----SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHT 330
           R  +P+ L  L  M  L +     + S +++     +    A  L+ QM  +  QP++ T
Sbjct: 112 RSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVT 171

Query: 331 YDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQIS 390
           ++  I  +         + ++  M     +P   T  T+     K  ++DLA +LL ++ 
Sbjct: 172 FNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKME 231

Query: 391 RCTNPKPFSAFLAACDTM---DKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPY 446
           +         +    D +        A+ +F +M  K +RP++ TY  L     N     
Sbjct: 232 KGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCN----- 286

Query: 447 EEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTP 506
                + +   A R+ +   DM    I  + ++   L+ A   EG + E  + + +    
Sbjct: 287 -----YGRWSDASRLLS---DMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKR 338

Query: 507 LGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSA 563
              P   TY+++++          A  +F+ M +    PN  TYN +I      +  +  
Sbjct: 339 SIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEG 398

Query: 564 SALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKK 623
             L   M + G    T+TY  LI+ L   GD D A  +   +  +G+P D++ Y+ +L  
Sbjct: 399 MELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDG 458

Query: 624 ACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEE 683
            C+ G+++    + E + ++K++PD  T + +  G    G      +    LS++ +   
Sbjct: 459 LCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPN 518

Query: 684 VSTLEEKRSDFEDLILAEDSEAESR 708
           V       S F    L E+++A  R
Sbjct: 519 VIIYTTMISGFCRKGLKEEADALFR 543



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 105/492 (21%), Positives = 191/492 (38%), Gaps = 27/492 (5%)

Query: 194 VTYTELLKLAVWQKNLS-AVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQH 252
           VT + LL      K +S AV  + + ++  Y  +  +    +           A   +  
Sbjct: 135 VTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDR 194

Query: 253 MVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWS-----FSDVIHACGRTQ 307
           MVA      L+   T    L   R DI + L+ L  M+  +       ++ +I A    +
Sbjct: 195 MVARGCQPDLFTYGTVVNGL-CKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYK 253

Query: 308 NSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIA 367
           N   A  L  +M + G++P+  TY+  IR + +     +   +L  M +  + P   T +
Sbjct: 254 NVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFS 313

Query: 368 TLSVECSKALELDLAEALLDQ-ISRCTNPKPF--SAFLAACDTMDKPERAIKIFAKMRQK 424
            L     K  +L  AE L D+ I R  +P  F  S+ +      D+ + A  +F  M  K
Sbjct: 314 ALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISK 373

Query: 425 -LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNL 483
              P++ TY  L   F       E   +F +             M++  +  + ++   L
Sbjct: 374 DCFPNVVTYNTLIKGFCKAKRVEEGMELFRE-------------MSQRGLVGNTVTYNTL 420

Query: 484 LKALGAEG---MIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGI 540
           ++ L   G   M +++ +       P    TY+ +L  L +  +  +A+ +F+ ++   +
Sbjct: 421 IQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKM 480

Query: 541 PPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALN 600
            P+  TYNIMI+        +    L   +   G  P  + YT +I      G  +EA  
Sbjct: 481 EPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADA 540

Query: 601 LLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYV 660
           L   +  +G   +   YNT+++     G       +I++M       D ST   V +   
Sbjct: 541 LFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTISMVINMLH 600

Query: 661 NCGFHNSAMEAL 672
           +     S +E L
Sbjct: 601 DGRLEKSYLEML 612



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 85/433 (19%), Positives = 177/433 (40%), Gaps = 47/433 (10%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y  ++  LCK G ++ A +L+  + E+  I   + +Y + + A     ++  A      M
Sbjct: 207 YGTVVNGLCKRGDIDLALSLLKKM-EKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEM 265

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYSLSIFSLRKFVWSFTRLRDL 243
           D++ +  N VTY  L++        S    +  D I +  + ++ +    + +F +   L
Sbjct: 266 DNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKL 325

Query: 244 KSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHAC 303
             A +    M+                  RS   DI              +++S +I+  
Sbjct: 326 VEAEKLYDEMIK-----------------RSIDPDI--------------FTYSSLINGF 354

Query: 304 GRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQD 363
                   A+ +   M S    P+  TY+  I+     + +  GME+ + M Q  L    
Sbjct: 355 CMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNT 414

Query: 364 STIATLSVECSKALELDLAEALLDQISRCTNPK---PFSAFLAACDTMDKPERAIKIFAK 420
            T  TL     +A + D+A+ +  ++     P     +S  L       K E+A+ +F  
Sbjct: 415 VTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEY 474

Query: 421 MRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHIS 479
           +++ K+ PDI TY ++           +  ++F  +     +  ++ ++       S   
Sbjct: 475 LQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLS----LKGVKPNVIIYTTMISGFC 530

Query: 480 MKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCG 539
            K L +   A+ + RE+ +   D   P  + TYNT++ + +   +   + E+ K+M++CG
Sbjct: 531 RKGLKEE--ADALFREMKE---DGTLP-NSGTYNTLIRARLRDGDKAASAELIKEMRSCG 584

Query: 540 IPPNAATYNIMID 552
              +A+T +++I+
Sbjct: 585 FVGDASTISMVIN 597



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 67/138 (48%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           +YN +++      +   A+ +  +M   G  P+  T + +++     +    A ALV  M
Sbjct: 101 SYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQM 160

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
               + P T+T+  LI  L  +    EA+ L+D +   G   D+  Y T++   C++G I
Sbjct: 161 FVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDI 220

Query: 631 DVIEFIIEQMHQNKVQPD 648
           D+   ++++M + K++ D
Sbjct: 221 DLALSLLKKMEKGKIEAD 238



 Score = 47.4 bits (111), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 55/279 (19%), Positives = 116/279 (41%), Gaps = 14/279 (5%)

Query: 93  ILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERY 152
           ++N   +  D    +   + ME+ +I  +   Y  ++ ALC    + +A NL   +  + 
Sbjct: 210 VVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNK- 268

Query: 153 GIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAV 212
           GI P +  YNS +           A+  L  M  R +  N VT++ L+   V +  L   
Sbjct: 269 GIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEA 328

Query: 213 HEIWEDYIKH-YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTS--- 268
            +++++ IK      IF+    +  F     L  A    +HM  L +    + N  +   
Sbjct: 329 EKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEA----KHMFELMISKDCFPNVVTYNT 384

Query: 269 --EGRLRSSRLDIPIPLNALPVMKVL---RWSFSDVIHACGRTQNSGLAEQLMLQMQSLG 323
             +G  ++ R++  + L      + L     +++ +I    +  +  +A+++  +M S G
Sbjct: 385 LIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDG 444

Query: 324 LQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQ 362
           + P   TY   +  +     L   + V + +Q++ ++P 
Sbjct: 445 VPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPD 483


>gi|15222409|ref|NP_176529.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75205330|sp|Q9SH26.1|PP102_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63400
 gi|6633845|gb|AAF19704.1|AC008047_11 F2K11.22 [Arabidopsis thaliana]
 gi|332195974|gb|AEE34095.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 577

 Score =  102 bits (254), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 87/364 (23%), Positives = 169/364 (46%), Gaps = 20/364 (5%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           ++  V++   +  +  LA  L+ +M++  ++ +   Y   I ++   R   + + +   M
Sbjct: 227 TYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEM 286

Query: 355 QQNNLKPQDSTIATL-SVECSKALELDLAEALLDQISRCTNPK--PFSAFLAACDTMDKP 411
           +   ++P   T ++L S  C+     D +  L D I R  NP    F+A + A     K 
Sbjct: 287 ENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKL 346

Query: 412 ERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
             A K++ +M ++ + PDI TY  L + F           M  ++D AK +   E+ +++
Sbjct: 347 VEAEKLYDEMIKRSIDPDIFTYSSLINGFC----------MHDRLDEAKHM--FELMISK 394

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCD-SKTPL--GTPTYNTVLHSLVEAQESHR 527
           +   +  ++   L+        I E ++ F + S+  L   T TY T++H   +A++   
Sbjct: 395 DCFPNV-VTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDN 453

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A  +FKQM + G+ PN  TYN ++D        + A  +   + R    P   TY  +I+
Sbjct: 454 AQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIE 513

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
            +   G  ++  +L   +SL+G+  DV++YNT++   C KG  +  + +  +M ++   P
Sbjct: 514 GMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADALFRKMREDGPLP 573

Query: 648 DPST 651
           D  T
Sbjct: 574 DSGT 577



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 114/529 (21%), Positives = 213/529 (40%), Gaps = 33/529 (6%)

Query: 196 YTELLKLAVWQKNLSAVHEIWEDYIKHYSL-SIFSLRKFVWSFTRLRDLKSAYETLQHMV 254
           Y E+L+  +    L     ++   +K   L SIF   K + +  +++         + M 
Sbjct: 53  YREILRNGLHSMKLDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQ 112

Query: 255 ALAMMGKLY-----IN---RTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRT 306
            L +   LY     IN   R S+  L  + L   + L   P +  L    +   H  G+ 
Sbjct: 113 RLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCH--GKR 170

Query: 307 QNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTI 366
            +  +A  L+ QM  +G +P + T+   I  +         + ++  M Q   +P   T 
Sbjct: 171 ISDAVA--LVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTY 228

Query: 367 ATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDK---PERAIKIFAKMRQ 423
             +     K  ++DLA  LL+++           +    D++ K    + A+ +F +M  
Sbjct: 229 GVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMEN 288

Query: 424 K-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKN 482
           K +RP++ TY  L S   N    YE  +  S++ S         DM    I  + ++   
Sbjct: 289 KGVRPNVITYSSLISCLCN----YERWSDASRLLS---------DMIERKINPNVVTFNA 335

Query: 483 LLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCG 539
           L+ A   EG + E  + + +       P   TY+++++          A  +F+ M +  
Sbjct: 336 LIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKD 395

Query: 540 IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEAL 599
             PN  TYN +I+     +       L   M + G    T+TYT LI       D D A 
Sbjct: 396 CFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQ 455

Query: 600 NLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
            +   +  +G+  +++ YNT+L   C+ G+++    + E + ++K++P   T + +  G 
Sbjct: 456 MVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGM 515

Query: 660 VNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDFEDLILAEDSEAESR 708
              G      +    LS++ +  +V       S F    L E+++A  R
Sbjct: 516 CKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADALFR 564



 Score = 56.2 bits (134), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 62/288 (21%), Positives = 121/288 (42%), Gaps = 17/288 (5%)

Query: 93  ILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERY 152
           ++N   +  D          ME  +I  N   Y  ++ +LCK  + ++A NL   + E  
Sbjct: 231 VVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEM-ENK 289

Query: 153 GIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAV 212
           G+ P +  Y+S +           A+  L  M  R +  N VT+  L+   V +  L   
Sbjct: 290 GVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEA 349

Query: 213 HEIWEDYIKH-YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTS--- 268
            +++++ IK      IF+    +  F     L  A    +HM  L +    + N  +   
Sbjct: 350 EKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEA----KHMFELMISKDCFPNVVTYNT 405

Query: 269 --EGRLRSSRLDIPIPLNALPVMKVL---RWSFSDVIHACGRTQNSGLAEQLMLQMQSLG 323
              G  ++ R+D  + L      + L     +++ +IH   + ++   A+ +  QM S G
Sbjct: 406 LINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDG 465

Query: 324 LQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           + P+  TY+  +  +  +  L   M V + +Q++ ++P   TI T ++
Sbjct: 466 VHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEP---TIYTYNI 510



 Score = 39.7 bits (91), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 37/168 (22%), Positives = 68/168 (40%), Gaps = 3/168 (1%)

Query: 508 GTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALV 567
           G+  Y  +L + + + +   A+ +F  M      P+   +N ++   + ++ F    +L 
Sbjct: 49  GSGDYREILRNGLHSMKLDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLG 108

Query: 568 SMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEK 627
             M R G      TY  LI           AL LL  +   G    ++  +++L   C  
Sbjct: 109 EKMQRLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHG 168

Query: 628 GRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
            RI     +++QM +   +PD  T   +  G      HN A EA+ ++
Sbjct: 169 KRISDAVALVDQMVEMGYRPDTITFTTLIHGLF---LHNKASEAVALV 213


>gi|79369396|ref|NP_176481.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806495|sp|Q9LQ14.2|PPR96_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62930, chloroplastic; Flags: Precursor
 gi|332195902|gb|AEE34023.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 629

 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 87/366 (23%), Positives = 168/366 (45%), Gaps = 22/366 (6%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           +++  V++   +  +  LA  L+ +M+   ++     Y   I A+ + + + + + +   
Sbjct: 221 FTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTE 280

Query: 354 MQQNNLKPQDSTIATL-SVECSKALELDLAEALLDQISRCTNPK--PFSAFLAACDTMDK 410
           M    ++P   T  +L    C+     D +  L D I R  NP    FSA + A     K
Sbjct: 281 MDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGK 340

Query: 411 PERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
              A K++ +M ++ + PDI TY  L + F           M  ++D AK +   E+ ++
Sbjct: 341 LVEAEKLYDEMIKRSIDPDIFTYSSLINGFC----------MHDRLDEAKHM--FELMIS 388

Query: 470 RN---NIQHSHISMKNLLKALGAE-GMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQES 525
           ++   N+   +  +K   KA   E GM  EL +          T TYNT++  L +A + 
Sbjct: 389 KDCFPNVVTYNTLIKGFCKAKRVEEGM--ELFREMSQRGLVGNTVTYNTLIQGLFQAGDC 446

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
             A +IFK+M + G+PP+  TY+I++D        + A  +   + +    P   TY  +
Sbjct: 447 DMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIM 506

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           I+ +   G  ++  +L   +SL+G+  +V++Y T++   C KG  +  + +  +M ++  
Sbjct: 507 IEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGT 566

Query: 646 QPDPST 651
            P+  T
Sbjct: 567 LPNSGT 572



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 94/445 (21%), Positives = 181/445 (40%), Gaps = 25/445 (5%)

Query: 276 RLDIPIPLNALPVMKVLRW-----SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHT 330
           R  +P+ L  L  M  L +     + S +++     +    A  L+ QM  +  QP++ T
Sbjct: 128 RSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVT 187

Query: 331 YDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQIS 390
           ++  I  +         + ++  M     +P   T  T+     K  ++DLA +LL ++ 
Sbjct: 188 FNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKME 247

Query: 391 RCTNPKPFSAFLAACDTM---DKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPY 446
           +         +    D +        A+ +F +M  K +RP++ TY  L     N     
Sbjct: 248 KGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCN----- 302

Query: 447 EEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTP 506
                + +   A R+ +   DM    I  + ++   L+ A   EG + E  + + +    
Sbjct: 303 -----YGRWSDASRLLS---DMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKR 354

Query: 507 LGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSA 563
              P   TY+++++          A  +F+ M +    PN  TYN +I      +  +  
Sbjct: 355 SIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEG 414

Query: 564 SALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKK 623
             L   M + G    T+TY  LI+ L   GD D A  +   +  +G+P D++ Y+ +L  
Sbjct: 415 MELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDG 474

Query: 624 ACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEE 683
            C+ G+++    + E + ++K++PD  T + +  G    G      +    LS++ +   
Sbjct: 475 LCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPN 534

Query: 684 VSTLEEKRSDFEDLILAEDSEAESR 708
           V       S F    L E+++A  R
Sbjct: 535 VIIYTTMISGFCRKGLKEEADALFR 559



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 105/492 (21%), Positives = 191/492 (38%), Gaps = 27/492 (5%)

Query: 194 VTYTELLKLAVWQKNLS-AVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQH 252
           VT + LL      K +S AV  + + ++  Y  +  +    +           A   +  
Sbjct: 151 VTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDR 210

Query: 253 MVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWS-----FSDVIHACGRTQ 307
           MVA      L+   T    L   R DI + L+ L  M+  +       ++ +I A    +
Sbjct: 211 MVARGCQPDLFTYGTVVNGL-CKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYK 269

Query: 308 NSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIA 367
           N   A  L  +M + G++P+  TY+  IR + +     +   +L  M +  + P   T +
Sbjct: 270 NVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFS 329

Query: 368 TLSVECSKALELDLAEALLDQ-ISRCTNPKPF--SAFLAACDTMDKPERAIKIFAKMRQK 424
            L     K  +L  AE L D+ I R  +P  F  S+ +      D+ + A  +F  M  K
Sbjct: 330 ALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISK 389

Query: 425 -LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNL 483
              P++ TY  L   F       E   +F +             M++  +  + ++   L
Sbjct: 390 DCFPNVVTYNTLIKGFCKAKRVEEGMELFRE-------------MSQRGLVGNTVTYNTL 436

Query: 484 LKALGAEG---MIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGI 540
           ++ L   G   M +++ +       P    TY+ +L  L +  +  +A+ +F+ ++   +
Sbjct: 437 IQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKM 496

Query: 541 PPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALN 600
            P+  TYNIMI+        +    L   +   G  P  + YT +I      G  +EA  
Sbjct: 497 EPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADA 556

Query: 601 LLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYV 660
           L   +  +G   +   YNT+++     G       +I++M       D ST   V +   
Sbjct: 557 LFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTISMVINMLH 616

Query: 661 NCGFHNSAMEAL 672
           +     S +E L
Sbjct: 617 DGRLEKSYLEML 628



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 85/433 (19%), Positives = 177/433 (40%), Gaps = 47/433 (10%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y  ++  LCK G ++ A +L+  + E+  I   + +Y + + A     ++  A      M
Sbjct: 223 YGTVVNGLCKRGDIDLALSLLKKM-EKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEM 281

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYSLSIFSLRKFVWSFTRLRDL 243
           D++ +  N VTY  L++        S    +  D I +  + ++ +    + +F +   L
Sbjct: 282 DNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKL 341

Query: 244 KSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHAC 303
             A +    M+                  RS   DI              +++S +I+  
Sbjct: 342 VEAEKLYDEMIK-----------------RSIDPDI--------------FTYSSLINGF 370

Query: 304 GRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQD 363
                   A+ +   M S    P+  TY+  I+     + +  GME+ + M Q  L    
Sbjct: 371 CMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNT 430

Query: 364 STIATLSVECSKALELDLAEALLDQISRCTNPK---PFSAFLAACDTMDKPERAIKIFAK 420
            T  TL     +A + D+A+ +  ++     P     +S  L       K E+A+ +F  
Sbjct: 431 VTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEY 490

Query: 421 MRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHIS 479
           +++ K+ PDI TY ++           +  ++F  +     +  ++ ++       S   
Sbjct: 491 LQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLS----LKGVKPNVIIYTTMISGFC 546

Query: 480 MKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCG 539
            K L +   A+ + RE+ +   D   P  + TYNT++ + +   +   + E+ K+M++CG
Sbjct: 547 RKGLKEE--ADALFREMKE---DGTLP-NSGTYNTLIRARLRDGDKAASAELIKEMRSCG 600

Query: 540 IPPNAATYNIMID 552
              +A+T +++I+
Sbjct: 601 FVGDASTISMVIN 613



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 67/138 (48%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           +YN +++      +   A+ +  +M   G  P+  T + +++     +    A ALV  M
Sbjct: 117 SYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQM 176

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
               + P T+T+  LI  L  +    EA+ L+D +   G   D+  Y T++   C++G I
Sbjct: 177 FVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDI 236

Query: 631 DVIEFIIEQMHQNKVQPD 648
           D+   ++++M + K++ D
Sbjct: 237 DLALSLLKKMEKGKIEAD 254



 Score = 47.4 bits (111), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 55/278 (19%), Positives = 116/278 (41%), Gaps = 14/278 (5%)

Query: 93  ILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERY 152
           ++N   +  D    +   + ME+ +I  +   Y  ++ ALC    + +A NL   +  + 
Sbjct: 226 VVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNK- 284

Query: 153 GIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAV 212
           GI P +  YNS +           A+  L  M  R +  N VT++ L+   V +  L   
Sbjct: 285 GIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEA 344

Query: 213 HEIWEDYIKH-YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTS--- 268
            +++++ IK      IF+    +  F     L  A    +HM  L +    + N  +   
Sbjct: 345 EKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEA----KHMFELMISKDCFPNVVTYNT 400

Query: 269 --EGRLRSSRLDIPIPLNALPVMKVL---RWSFSDVIHACGRTQNSGLAEQLMLQMQSLG 323
             +G  ++ R++  + L      + L     +++ +I    +  +  +A+++  +M S G
Sbjct: 401 LIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDG 460

Query: 324 LQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKP 361
           + P   TY   +  +     L   + V + +Q++ ++P
Sbjct: 461 VPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEP 498


>gi|168034142|ref|XP_001769572.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162679114|gb|EDQ65565.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 871

 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 89/376 (23%), Positives = 162/376 (43%), Gaps = 23/376 (6%)

Query: 297 SDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQ 356
           S +I   GR     +A  +  + Q  G   + + Y   + A       R  ++V + M++
Sbjct: 203 SIMISTLGRLGKVEIALDVFNRAQKAGFGNNVYAYSAMVSAYGRSGRCREALKVFQAMKK 262

Query: 357 NNLKPQDSTIATLSVECSKALELDLAEAL--LDQISR-CTNPK--PFSAFLAACDTMDKP 411
              KP   T  T+   C K   +DL +AL   +++ +    P    F++ +A C      
Sbjct: 263 AGCKPNLITYNTIIDACGKG-GVDLKKALDIFEEMQKEGVEPDRITFNSLIAVCSRGSLW 321

Query: 412 ERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           E + ++FA+M R+ +  DI TY  L      ++A  + G M       +   +I   M  
Sbjct: 322 EDSQRVFAEMQRRGIEQDIFTYNTL------IDAVCKGGQM-------ELAASIMSSMRL 368

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHR 527
            NI  + ++   ++   G  G   E I  + D K     P   +YNT++    +      
Sbjct: 369 KNISPNVVTYSTMIDGYGKLGCFEEAIGLYHDMKESGVRPDRVSYNTLIDIYAKLGRFDD 428

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A+   K M+  G+  +  TYN +ID       +K A+ L   M  +G  P  +TY+ALI 
Sbjct: 429 ALTACKDMERVGLKADVVTYNALIDAYGKQGKYKDAAGLFDKMKAEGLVPNVLTYSALID 488

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
                G   +A ++       G+  DV+LY++++   C+ G ++    ++++M Q  +QP
Sbjct: 489 AYSKAGMHQDATSIFVEFKRAGLKPDVVLYSSLIDSCCKCGLVEDAVVLLQEMTQAGIQP 548

Query: 648 DPSTCHFVFSGYVNCG 663
           +  T + +   Y   G
Sbjct: 549 NIVTYNSLIDAYGRNG 564



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 79/327 (24%), Positives = 140/327 (42%), Gaps = 26/327 (7%)

Query: 353 IMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRC------TNPKPFSAFLAACD 406
           ++QQ +L+ + S +A++ +  S    L   E  LD  +R        N   +SA ++A  
Sbjct: 188 MVQQGHLRSEWSKLASIMI--STLGRLGKVEIALDVFNRAQKAGFGNNVYAYSAMVSAYG 245

Query: 407 TMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIE 465
              +   A+K+F  M++   +P++ TY  +    G              VD  K ++  E
Sbjct: 246 RSGRCREALKVFQAMKKAGCKPNLITYNTIIDACGK-----------GGVDLKKALDIFE 294

Query: 466 MDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP----TYNTVLHSLVE 521
            +M +  ++   I+  +L+ A+ + G + E  Q         G      TYNT++ ++ +
Sbjct: 295 -EMQKEGVEPDRITFNSLI-AVCSRGSLWEDSQRVFAEMQRRGIEQDIFTYNTLIDAVCK 352

Query: 522 AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMT 581
             +   A  I   M+   I PN  TY+ MID    + CF+ A  L   M   G  P  ++
Sbjct: 353 GGQMELAASIMSSMRLKNISPNVVTYSTMIDGYGKLGCFEEAIGLYHDMKESGVRPDRVS 412

Query: 582 YTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMH 641
           Y  LI I    G FD+AL     +   G+  DV+ YN ++    ++G+      + ++M 
Sbjct: 413 YNTLIDIYAKLGRFDDALTACKDMERVGLKADVVTYNALIDAYGKQGKYKDAAGLFDKMK 472

Query: 642 QNKVQPDPSTCHFVFSGYVNCGFHNSA 668
              + P+  T   +   Y   G H  A
Sbjct: 473 AEGLVPNVLTYSALIDAYSKAGMHQDA 499



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 75/352 (21%), Positives = 155/352 (44%), Gaps = 27/352 (7%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRG---LRNGMEV 350
           +++S ++ A GR+     A ++   M+  G +P+  TY+  I A    +G   L+  +++
Sbjct: 235 YAYSAMVSAYGRSGRCREALKVFQAMKKAGCKPNLITYNTIIDAC--GKGGVDLKKALDI 292

Query: 351 LKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDK 410
            + MQ+  ++P   T  +L   CS+    + ++ +  ++ R    +    +    D + K
Sbjct: 293 FEEMQKEGVEPDRITFNSLIAVCSRGSLWEDSQRVFAEMQRRGIEQDIFTYNTLIDAVCK 352

Query: 411 P---ERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM 466
               E A  I + MR K + P++ TY  +   +G +    E   ++              
Sbjct: 353 GGQMELAASIMSSMRLKNISPNVVTYSTMIDGYGKLGCFEEAIGLYH------------- 399

Query: 467 DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLG----TPTYNTVLHSLVEA 522
           DM  + ++   +S   L+      G   + +   C     +G      TYN ++ +  + 
Sbjct: 400 DMKESGVRPDRVSYNTLIDIYAKLGRFDDALTA-CKDMERVGLKADVVTYNALIDAYGKQ 458

Query: 523 QESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTY 582
            +   A  +F +MK  G+ PN  TY+ +ID  S     + A+++     R G  P  + Y
Sbjct: 459 GKYKDAAGLFDKMKAEGLVPNVLTYSALIDAYSKAGMHQDATSIFVEFKRAGLKPDVVLY 518

Query: 583 TALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIE 634
           ++LI      G  ++A+ LL  ++  GI  +++ YN+++      G++D +E
Sbjct: 519 SSLIDSCCKCGLVEDAVVLLQEMTQAGIQPNIVTYNSLIDAYGRNGQVDNVE 570



 Score = 68.9 bits (167), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 99/208 (47%), Gaps = 4/208 (1%)

Query: 483 LLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQ-ESHRAMEIFKQMKTC 538
           ++ A G  G  RE ++ F   K     P   TYNT++ +  +   +  +A++IF++M+  
Sbjct: 240 MVSAYGRSGRCREALKVFQAMKKAGCKPNLITYNTIIDACGKGGVDLKKALDIFEEMQKE 299

Query: 539 GIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEA 598
           G+ P+  T+N +I  CS    ++ +  + + M R G      TY  LI  +   G  + A
Sbjct: 300 GVEPDRITFNSLIAVCSRGSLWEDSQRVFAEMQRRGIEQDIFTYNTLIDAVCKGGQMELA 359

Query: 599 LNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
            +++  + L+ I  +V+ Y+T++    + G  +    +   M ++ V+PD  + + +   
Sbjct: 360 ASIMSSMRLKNISPNVVTYSTMIDGYGKLGCFEEAIGLYHDMKESGVRPDRVSYNTLIDI 419

Query: 659 YVNCGFHNSAMEALQVLSMRMLCEEVST 686
           Y   G  + A+ A + +    L  +V T
Sbjct: 420 YAKLGRFDDALTACKDMERVGLKADVVT 447



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 62/308 (20%), Positives = 116/308 (37%), Gaps = 49/308 (15%)

Query: 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
           R +F+ +I  C R      ++++  +MQ  G++    TY+  I A+     +     ++ 
Sbjct: 305 RITFNSLIAVCSRGSLWEDSQRVFAEMQRRGIEQDIFTYNTLIDAVCKGGQMELAASIMS 364

Query: 353 IMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPE 412
            M+  N+ P                                N   +S  +     +   E
Sbjct: 365 SMRLKNISP--------------------------------NVVTYSTMIDGYGKLGCFE 392

Query: 413 RAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471
            AI ++  M++  +RPD  +Y  L  ++  +      G     + + K       DM R 
Sbjct: 393 EAIGLYHDMKESGVRPDRVSYNTLIDIYAKL------GRFDDALTACK-------DMERV 439

Query: 472 NIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRA 528
            ++   ++   L+ A G +G  ++    F   K     P   TY+ ++ +  +A     A
Sbjct: 440 GLKADVVTYNALIDAYGKQGKYKDAAGLFDKMKAEGLVPNVLTYSALIDAYSKAGMHQDA 499

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
             IF + K  G+ P+   Y+ +ID C      + A  L+  M + G  P  +TY +LI  
Sbjct: 500 TSIFVEFKRAGLKPDVVLYSSLIDSCCKCGLVEDAVVLLQEMTQAGIQPNIVTYNSLIDA 559

Query: 589 LLDYGDFD 596
               G  D
Sbjct: 560 YGRNGQVD 567



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 96/494 (19%), Positives = 188/494 (38%), Gaps = 85/494 (17%)

Query: 105 FVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSF 164
             ++ +   ++   G N   Y  M+ A  + G   EA  +   + ++ G  P L  YN+ 
Sbjct: 217 IALDVFNRAQKAGFGNNVYAYSAMVSAYGRSGRCREALKVFQAM-KKAGCKPNLITYNTI 275

Query: 165 LGACAKLHSMVHANLCLDL---MDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK 221
           + AC K    V     LD+   M    V  + +T+  L+ +        +   +WED  +
Sbjct: 276 IDACGK--GGVDLKKALDIFEEMQKEGVEPDRITFNSLIAVC-------SRGSLWEDSQR 326

Query: 222 HYS-LSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIP 280
            ++ +    + + ++++  L D  +  +  Q  +A ++M  +        RL++      
Sbjct: 327 VFAEMQRRGIEQDIFTYNTLID--AVCKGGQMELAASIMSSM--------RLKN------ 370

Query: 281 IPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVS 340
           I  N +        ++S +I   G+      A  L   M+  G++P   +Y+  I     
Sbjct: 371 ISPNVV--------TYSTMIDGYGKLGCFEEAIGLYHDMKESGVRPDRVSYNTLIDIYAK 422

Query: 341 DRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKP 397
                + +   K M++  LK    T   L     K  +   A  L D++       N   
Sbjct: 423 LGRFDDALTACKDMERVGLKADVVTYNALIDAYGKQGKYKDAAGLFDKMKAEGLVPNVLT 482

Query: 398 FSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVD 456
           +SA + A       + A  IF +  R  L+PD+  Y  L                   +D
Sbjct: 483 YSALIDAYSKAGMHQDATSIFVEFKRAGLKPDVVLYSSL-------------------ID 523

Query: 457 SAKRINAIE------MDMARNNIQHSHISMKNLLKALGAEGMIREL--------IQYFCD 502
           S  +   +E       +M +  IQ + ++  +L+ A G  G +  +        I  F  
Sbjct: 524 SCCKCGLVEDAVVLLQEMTQAGIQPNIVTYNSLIDAYGRNGQVDNVEAAKGNMPINVF-- 581

Query: 503 SKTPLGTPTYNTVLHSLVEAQESH------RAMEIFKQMKTCGIPPNAATYNIMIDCCSI 556
               +G  +   +  +L   Q ++       A+ +F +M+  G+ PN  T++ +++ CS 
Sbjct: 582 --NKVGDRSTEIICKTLTSQQNANDHTGVLAAVSVFHEMQQFGLKPNVVTFSAILNACSR 639

Query: 557 IRCFKSASALVSMM 570
               + AS L+  M
Sbjct: 640 CSSLQEASVLLEQM 653


>gi|255557743|ref|XP_002519901.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540947|gb|EEF42505.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 777

 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 135/615 (21%), Positives = 241/615 (39%), Gaps = 79/615 (12%)

Query: 91  FHILNYCARSPDP-LF---------------VMETWRMMEEKEIGLNNKCYLLMMQALCK 134
           F I+ +C  +PD  LF                +E +R ME+  +  N   Y  ++  LCK
Sbjct: 185 FDIMCHCGVTPDVYLFSTMVNAFCTGGRVDDAIELFRKMEKVGVAPNVVTYNNIIHGLCK 244

Query: 135 GGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEV 194
            G L+EA      + E+  + P L  Y   +    KL     AN  L  M  R    N V
Sbjct: 245 NGRLDEAFQFKEKM-EKERVKPSLVTYGVLINGLVKLERFDEANCILKEMSDRGYAPNNV 303

Query: 195 TYTELLKLAVWQKNLSAVHEIWEDYIKH-YSLSIFSLRKFVWSFTRLRDLKSAYETLQHM 253
            Y  L+       N+S   +I +D I +  S +  +    +  + +   ++ A    +H+
Sbjct: 304 VYNTLIDGYCRIGNISTALQIRDDMISNGISPNSVTCNSLIQGYCKSNQMEHA----EHL 359

Query: 254 VALAMMGKLYINRTSEGRLRS--SRLDIPIPLNA--LPVMKVLRWSFSD-----VIHACG 304
           +   + G   IN   +G   S   RL +    ++  L +M++L  +F        +   G
Sbjct: 360 LEEMLTGGGVIN---QGTFTSVIHRLCLKCRFDSALLFIMEMLLRNFKPNDGLLTLLVSG 416

Query: 305 RTQNSGLAEQLMLQMQSL--GLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQ 362
             QN   +E + L  + L  G   ++ T +  I  +          ++LK M +  L   
Sbjct: 417 LCQNGKQSEAIELWYRLLEKGFAANTVTSNALIHGLCEAGSKEEAAKLLKEMLERGL--- 473

Query: 363 DSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKM- 421
                                 +LD IS       ++  + AC    K E   K+  +M 
Sbjct: 474 ----------------------VLDSIS-------YNTLILACCKEGKVEEGFKLKEEMV 504

Query: 422 RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMK 481
           R+ ++PD+ TY +L     N+    E G ++ +     + N    D     I        
Sbjct: 505 RRGIQPDMYTYNMLLHGLCNMGKIEEAGGLWHEC----KKNGNFPDAYTYGIMIDGYCKA 560

Query: 482 NLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIP 541
           N ++    EG   +L Q     K       Y T++ +  E      A  +   M++ GIP
Sbjct: 561 NRVE----EG--EKLFQEMVTMKIEQNAVVYGTLIRAYCENGNMREAFRLRDDMRSRGIP 614

Query: 542 PNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNL 601
             +ATY+ +I   S I    SA+ L+  M ++G  P  + YTALI      G   +  ++
Sbjct: 615 QTSATYSSLIHGLSNIGLVDSANQLLDEMRKEGLSPNVVCYTALIGGYCKLGQMHKVDSI 674

Query: 602 LDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVN 661
           L  +S+  +  + + Y  ++   C+ G +     ++ +M Q  + PD  T + + +G+  
Sbjct: 675 LQEMSINNVHPNKITYTIMINGHCKLGNMKAAAKLLNEMAQKGIVPDAVTYNALTNGFCK 734

Query: 662 CGFHNSAMEALQVLS 676
            G    A++   ++S
Sbjct: 735 EGKMEEALKVCDLMS 749



 Score = 62.4 bits (150), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 91/219 (41%), Gaps = 35/219 (15%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TYN +LH L    +   A  ++ + K  G  P+A TY IMID        +    L   M
Sbjct: 514 TYNMLLHGLCNMGKIEEAGGLWHECKKNGNFPDAYTYGIMIDGYCKANRVEEGEKLFQEM 573

Query: 571 V------------------------RDGF----------YPQT-MTYTALIKILLDYGDF 595
           V                        R+ F           PQT  TY++LI  L + G  
Sbjct: 574 VTMKIEQNAVVYGTLIRAYCENGNMREAFRLRDDMRSRGIPQTSATYSSLIHGLSNIGLV 633

Query: 596 DEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFV 655
           D A  LLD +  EG+  +V+ Y  ++   C+ G++  ++ I+++M  N V P+  T   +
Sbjct: 634 DSANQLLDEMRKEGLSPNVVCYTALIGGYCKLGQMHKVDSILQEMSINNVHPNKITYTIM 693

Query: 656 FSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDF 694
            +G+   G   +A + L  ++ + +  +  T     + F
Sbjct: 694 INGHCKLGNMKAAAKLLNEMAQKGIVPDAVTYNALTNGF 732



 Score = 59.7 bits (143), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 76/180 (42%)

Query: 491 GMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIM 550
           G++ EL     +        T N +L SLV+A E   + ++F  M  CG+ P+   ++ M
Sbjct: 144 GVVFELFSLLANKGLFPSLKTCNFLLSSLVKANEVKMSYQVFDIMCHCGVTPDVYLFSTM 203

Query: 551 IDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGI 610
           ++          A  L   M + G  P  +TY  +I  L   G  DEA    + +  E +
Sbjct: 204 VNAFCTGGRVDDAIELFRKMEKVGVAPNVVTYNNIIHGLCKNGRLDEAFQFKEKMEKERV 263

Query: 611 PHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAME 670
              ++ Y  ++    +  R D    I+++M      P+    + +  GY   G  ++A++
Sbjct: 264 KPSLVTYGVLINGLVKLERFDEANCILKEMSDRGYAPNNVVYNTLIDGYCRIGNISTALQ 323


>gi|15238505|ref|NP_201359.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180383|sp|Q9LSL9.1|PP445_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65560
 gi|8978284|dbj|BAA98175.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737310|dbj|BAF00601.1| hypothetical protein [Arabidopsis thaliana]
 gi|332010688|gb|AED98071.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 915

 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 135/595 (22%), Positives = 240/595 (40%), Gaps = 61/595 (10%)

Query: 93  ILNYCARSPDPLFVMETWRMMEEKE-----IGLNNKCYLLMMQALCKGGYLEEASNLIYF 147
           ++  C    D L+V++  R M + E       L   CY  ++ +L + G ++E    +Y 
Sbjct: 149 MIKSCDSVGDALYVLDLCRKMNKDERFELKYKLIIGCYNTLLNSLARFGLVDEMKQ-VYM 207

Query: 148 LGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQK 207
                 + P +  YN  +    KL ++  AN  +  +    +  +  TYT L+     +K
Sbjct: 208 EMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRK 267

Query: 208 NLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRT 267
           +L +  +++ +                      R  + AY  L H + +A        R 
Sbjct: 268 DLDSAFKVFNE----------------MPLKGCRRNEVAYTHLIHGLCVA-------RRI 304

Query: 268 SEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPS 327
            E       +D+ + +        +R     +   CG  + S  A  L+ +M+  G++P+
Sbjct: 305 DEA------MDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSE-ALNLVKEMEETGIKPN 357

Query: 328 SHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTI-ATLSVECSKALELDLAEA-- 384
            HTY   I ++ S        E+L  M +  L P   T  A ++  C + +  D  +   
Sbjct: 358 IHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVE 417

Query: 385 LLDQISRCTNPKPFSAFLAA-CDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNV 442
           L++      N + ++  +   C +     +A+ +  KM  +K+ PD+ TY  L      +
Sbjct: 418 LMESRKLSPNTRTYNELIKGYCKS--NVHKAMGVLNKMLERKVLPDVVTYNSL------I 469

Query: 443 NAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCD 502
           +     GN     DSA R+ ++  D      Q ++ SM   + +L     + E    F D
Sbjct: 470 DGQCRSGNF----DSAYRLLSLMNDRGLVPDQWTYTSM---IDSLCKSKRVEEACDLF-D 521

Query: 503 SKTPLGT-PT---YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIR 558
           S    G  P    Y  ++    +A +   A  + ++M +    PN+ T+N +I       
Sbjct: 522 SLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADG 581

Query: 559 CFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYN 618
             K A+ L   MV+ G  P   T T LI  LL  GDFD A +    +   G   D   Y 
Sbjct: 582 KLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYT 641

Query: 619 TILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           T ++  C +GR+   E ++ +M +N V PD  T   +  GY + G  N A + L+
Sbjct: 642 TFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLK 696



 Score = 82.8 bits (203), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 124/577 (21%), Positives = 230/577 (39%), Gaps = 46/577 (7%)

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
           MEE  I  N   Y +++ +LC     E+A  L+  + E+ G+ P +  YN+ +    K  
Sbjct: 349 MEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEK-GLMPNVITYNALINGYCKRG 407

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSL-SIFSLR 231
            +  A   ++LM+SR +  N  TY EL+K    + N+     +    ++   L  + +  
Sbjct: 408 MIEDAVDVVELMESRKLSPNTRTYNELIK-GYCKSNVHKAMGVLNKMLERKVLPDVVTYN 466

Query: 232 KFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRL-RSSRLDIPIPL------N 284
             +    R  +  SAY  L  M    ++   +   +    L +S R++    L       
Sbjct: 467 SLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQK 526

Query: 285 ALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGL 344
            +    V+  +  D     G+   + L  + ML    L   P+S T++  I  + +D  L
Sbjct: 527 GVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCL---PNSLTFNALIHGLCADGKL 583

Query: 345 RNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPKP--FSAF 401
           +    + + M +  L+P  ST   L     K  + D A +   Q +S  T P    ++ F
Sbjct: 584 KEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTF 643

Query: 402 LAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKR 460
           +       +   A  + AKMR+  + PD+ TY  L   +G++      G      D  KR
Sbjct: 644 IQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDL------GQTNFAFDVLKR 697

Query: 461 INAIEMDMARNNIQHSHISM-KNLL-----KALGAE------------GMIRELIQYFCD 502
           +     D      QH+ +S+ K+LL     K  G+E              + EL++   +
Sbjct: 698 MR----DTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFDTVVELLEKMVE 753

Query: 503 SKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQM-KTCGIPPNAATYNIMIDCCSIIRCFK 561
                   +Y  ++  + E      A ++F  M +  GI P+   +N ++ CC  ++   
Sbjct: 754 HSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLSCCCKLKKHN 813

Query: 562 SASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTIL 621
            A+ +V  M+  G  PQ  +   LI  L   G+ +   ++   +   G   D L +  I+
Sbjct: 814 EAAKVVDDMICVGHLPQLESCKVLICGLYKKGEKERGTSVFQNLLQCGYYEDELAWKIII 873

Query: 622 KKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
               ++G ++    +   M +N  +    T   +  G
Sbjct: 874 DGVGKQGLVEAFYELFNVMEKNGCKFSSQTYSLLIEG 910



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 79/175 (45%), Gaps = 1/175 (0%)

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           Y  ++H L  A+    AM++F +MK     P   TY ++I           A  LV  M 
Sbjct: 291 YTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEME 350

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
             G  P   TYT LI  L     F++A  LL  +  +G+  +V+ YN ++   C++G I+
Sbjct: 351 ETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIE 410

Query: 632 VIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
               ++E M   K+ P+  T + +  GY     H  AM  L  +  R +  +V T
Sbjct: 411 DAVDVVELMESRKLSPNTRTYNELIKGYCKSNVHK-AMGVLNKMLERKVLPDVVT 464



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 63/291 (21%), Positives = 120/291 (41%), Gaps = 10/291 (3%)

Query: 402 LAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI 461
           + +CD++      + +  KM +  R +++ Y+L+    G  N        F  VD  K++
Sbjct: 150 IKSCDSVGDALYVLDLCRKMNKDERFELK-YKLII---GCYNTLLNSLARFGLVDEMKQV 205

Query: 462 NAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHS 518
               M+M  + +  +  +   ++      G + E  QY          P   TY +++  
Sbjct: 206 Y---MEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMG 262

Query: 519 LVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQ 578
             + ++   A ++F +M   G   N   Y  +I    + R    A  L   M  D  +P 
Sbjct: 263 YCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPT 322

Query: 579 TMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIE 638
             TYT LIK L       EALNL+  +   GI  ++  Y  ++   C + + +    ++ 
Sbjct: 323 VRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLG 382

Query: 639 QMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEE 689
           QM +  + P+  T + + +GY   G    A++ ++++  R L     T  E
Sbjct: 383 QMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNE 433



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 96/455 (21%), Positives = 172/455 (37%), Gaps = 95/455 (20%)

Query: 4   PLLRTRFQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDAL 63
           P  RT  +LI   +CKS  HK     V NK+   + L   +  N           ++D  
Sbjct: 426 PNTRTYNELIK-GYCKSNVHK--AMGVLNKMLERKVLPDVVTYN----------SLIDGQ 472

Query: 64  CRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNK 123
           CR     +++ LL+L +                     D   V + W             
Sbjct: 473 CRSGNFDSAYRLLSLMN---------------------DRGLVPDQWT------------ 499

Query: 124 CYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDL 183
            Y  M+ +LCK   +EEA +L   L E+ G+ P + +Y + +    K   +  A+L L+ 
Sbjct: 500 -YTSMIDSLCKSKRVEEACDLFDSL-EQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEK 557

Query: 184 MDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK-HYSLSIFSLRKFVWSFTRLRD 242
           M S+    N +T+  L+        L     + E  +K     ++ +    +    +  D
Sbjct: 558 MLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGD 617

Query: 243 LKSAYETLQHMVALAMMGKLYINRT------SEGRLRSSRLDIPIPLNALPVMKVLR--- 293
              AY   Q M++       +   T       EGRL          L+A  +M  +R   
Sbjct: 618 FDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRL----------LDAEDMMAKMRENG 667

Query: 294 -----WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDR-GLRNG 347
                +++S +I   G    +  A  ++ +M+  G +PS HT+   I+ ++  + G + G
Sbjct: 668 VSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKG 727

Query: 348 -----------------MEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQIS 390
                            +E+L+ M ++++ P   +   L +   +   L +AE + D + 
Sbjct: 728 SEPELCAMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQ 787

Query: 391 RCTNPKP----FSAFLAACDTMDKPERAIKIFAKM 421
           R     P    F+A L+ C  + K   A K+   M
Sbjct: 788 RNEGISPSELVFNALLSCCCKLKKHNEAAKVVDDM 822


>gi|225445998|ref|XP_002267263.1| PREDICTED: pentatricopeptide repeat-containing protein At2g18940
           [Vitis vinifera]
 gi|297735424|emb|CBI17864.3| unnamed protein product [Vitis vinifera]
          Length = 821

 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 133/292 (45%), Gaps = 19/292 (6%)

Query: 381 LAEALLDQIS---RCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLF 436
           +A  LLD+IS      + + ++  L A   + K ERAI +F KMR+  L P + TY ++ 
Sbjct: 192 VALRLLDEISVEEYSLDVRAWTTILHAYSRIGKYERAITMFEKMRKTGLSPTLVTYNVML 251

Query: 437 SLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIREL 496
            ++G +              S  +I  +  +M  N ++    +   ++ A G EG++ E 
Sbjct: 252 DVYGKMGR------------SWNKILGLLDEMRSNGLEFDEFTCSTVISACGREGLLDEA 299

Query: 497 IQYFCDSKTP---LGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC 553
            ++F   K+     GT TYN++L    +A     A+ I K+M+    PP+  TYN ++  
Sbjct: 300 RKFFARLKSEGYVAGTFTYNSLLQVFGKAGIYSEALSILKEMEKNNCPPDLVTYNELVAA 359

Query: 554 CSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHD 613
                  +  +  +  M+R G  P  +TYT +I      G  D+AL+    +   G   +
Sbjct: 360 YVRAGFHEEGADFIDTMIRKGIMPNAITYTTVINAYGKAGKEDKALSFFRQMKESGCVPN 419

Query: 614 VLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFH 665
           V  YN IL    +K R++ +  ++  M  N   P+  T + + +   N G H
Sbjct: 420 VCTYNAILGMLGKKSRLEEMIDMLCDMRSNGCAPNSVTWNTMLAMCGNKGMH 471



 Score = 87.4 bits (215), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 90/407 (22%), Positives = 163/407 (40%), Gaps = 33/407 (8%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ VI+A G+      A     QM+  G  P+  TY+  +  +     L   +++L  M
Sbjct: 387 TYTTVINAYGKAGKEDKALSFFRQMKESGCVPNVCTYNAILGMLGKKSRLEEMIDMLCDM 446

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRC---TNPKPFSAFLAACDTMDKP 411
           + N   P   T  T+   C           +  ++  C    N   F+A + A       
Sbjct: 447 RSNGCAPNSVTWNTMLAMCGNKGMHKYVNRVFREMKSCGFEPNRDTFNALIGAYGRCGSQ 506

Query: 412 ERAIKIFAKM-RQKLRPDIRTYELLFSLF---GNVNA--------------PYEEG---- 449
              +K++ +M +    P + TY  L +     G+  A              P E      
Sbjct: 507 IDVVKMYEEMIKAGFTPCVTTYNALLNALARRGDWEAAESVILDMKSKGFKPNETSYSLM 566

Query: 450 -NMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLL----KALGAEGMIRELIQYFCDSK 504
            N +++  + + I  IE ++   +I  S I ++ L+    K     GM R   Q FC   
Sbjct: 567 LNCYAKGGNGRGIEKIEEEIYNGHIFPSWILLRTLVLANFKRRALMGMERAF-QEFCKHG 625

Query: 505 TPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCS-IIRCFKSA 563
                  +N++L    + +   RA E+ + ++  G+ P+  TYN ++D  +    C+K  
Sbjct: 626 YKPDLVLFNSMLSIFAKNKMYDRAHEMLRLIRESGLQPDLVTYNSLMDMYARGGECWKGE 685

Query: 564 SALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKK 623
             L  +  + G  P  ++Y  +IK     G   EA+  L  +++ GI   ++ YNT +  
Sbjct: 686 EILKGIQ-KSGGKPDLVSYNTVIKGFCRQGLMQEAIRTLSEMTISGIRPCIVTYNTFVAG 744

Query: 624 ACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAME 670
              KG    +E +I  M Q+  +P+  T   V  GY     +  AM+
Sbjct: 745 YSGKGMFSEVEEVISYMIQHDCRPNELTYKIVVDGYCKGKKYKEAMD 791



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 85/446 (19%), Positives = 174/446 (39%), Gaps = 66/446 (14%)

Query: 297 SDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQ 356
           S VI ACGR      A +   +++S G    + TY+  ++           + +LK M++
Sbjct: 284 STVISACGREGLLDEARKFFARLKSEGYVAGTFTYNSLLQVFGKAGIYSEALSILKEMEK 343

Query: 357 NNLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKPER 413
           NN  P   T   L     +A   +     +D + R     N   ++  + A     K ++
Sbjct: 344 NNCPPDLVTYNELVAAYVRAGFHEEGADFIDTMIRKGIMPNAITYTTVINAYGKAGKEDK 403

Query: 414 AIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSA-------------- 458
           A+  F +M++    P++ TY  +  + G  +   E  +M   + S               
Sbjct: 404 ALSFFRQMKESGCVPNVCTYNAILGMLGKKSRLEEMIDMLCDMRSNGCAPNSVTWNTMLA 463

Query: 459 --------KRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP 510
                   K +N +  +M     + +  +   L+ A G  G   ++++ + +      TP
Sbjct: 464 MCGNKGMHKYVNRVFREMKSCGFEPNRDTFNALIGAYGRCGSQIDVVKMYEEMIKAGFTP 523

Query: 511 ---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCS------------ 555
              TYN +L++L    +   A  +   MK+ G  PN  +Y++M++C +            
Sbjct: 524 CVTTYNALLNALARRGDWEAAESVILDMKSKGFKPNETSYSLMLNCYAKGGNGRGIEKIE 583

Query: 556 ------------------IIRCFKSASALVSM------MVRDGFYPQTMTYTALIKILLD 591
                             ++  FK   AL+ M        + G+ P  + + +++ I   
Sbjct: 584 EEIYNGHIFPSWILLRTLVLANFKR-RALMGMERAFQEFCKHGYKPDLVLFNSMLSIFAK 642

Query: 592 YGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
              +D A  +L L+   G+  D++ YN+++      G     E I++ + ++  +PD  +
Sbjct: 643 NKMYDRAHEMLRLIRESGLQPDLVTYNSLMDMYARGGECWKGEEILKGIQKSGGKPDLVS 702

Query: 652 CHFVFSGYVNCGFHNSAMEALQVLSM 677
            + V  G+   G    A+  L  +++
Sbjct: 703 YNTVIKGFCRQGLMQEAIRTLSEMTI 728



 Score = 77.0 bits (188), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 84/378 (22%), Positives = 150/378 (39%), Gaps = 23/378 (6%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVS-DRGLRNGMEVLKI 353
           +++ ++HA  R      A  +  +M+  GL P+  TY+  +       R     + +L  
Sbjct: 211 AWTTILHAYSRIGKYERAITMFEKMRKTGLSPTLVTYNVMLDVYGKMGRSWNKILGLLDE 270

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAE---ALLDQISRCTNPKPFSAFLAACDTMDK 410
           M+ N L+  + T +T+   C +   LD A    A L           +++ L        
Sbjct: 271 MRSNGLEFDEFTCSTVISACGREGLLDEARKFFARLKSEGYVAGTFTYNSLLQVFGKAGI 330

Query: 411 PERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPY-EEGNMFSQVDSAKRINAIEMDM 468
              A+ I  +M +    PD+ TY  L + +  V A + EEG  F  +D+          M
Sbjct: 331 YSEALSILKEMEKNNCPPDLVTYNELVAAY--VRAGFHEEGADF--IDT----------M 376

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQES 525
            R  I  + I+   ++ A G  G   + + +F   K     P   TYN +L  L +    
Sbjct: 377 IRKGIMPNAITYTTVINAYGKAGKEDKALSFFRQMKESGCVPNVCTYNAILGMLGKKSRL 436

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
              +++   M++ G  PN+ T+N M+  C      K  + +   M   GF P   T+ AL
Sbjct: 437 EEMIDMLCDMRSNGCAPNSVTWNTMLAMCGNKGMHKYVNRVFREMKSCGFEPNRDTFNAL 496

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           I      G   + + + + +   G    V  YN +L     +G  +  E +I  M     
Sbjct: 497 IGAYGRCGSQIDVVKMYEEMIKAGFTPCVTTYNALLNALARRGDWEAAESVILDMKSKGF 556

Query: 646 QPDPSTCHFVFSGYVNCG 663
           +P+ ++   + + Y   G
Sbjct: 557 KPNETSYSLMLNCYAKGG 574



 Score = 60.1 bits (144), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/229 (20%), Positives = 89/229 (38%), Gaps = 42/229 (18%)

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID------------------- 552
           + T+LH+     +  RA+ +F++M+  G+ P   TYN+M+D                   
Sbjct: 212 WTTILHAYSRIGKYERAITMFEKMRKTGLSPTLVTYNVMLDVYGKMGRSWNKILGLLDEM 271

Query: 553 -----------CCSIIRC------FKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDF 595
                      C ++I           A    + +  +G+   T TY +L+++    G +
Sbjct: 272 RSNGLEFDEFTCSTVISACGREGLLDEARKFFARLKSEGYVAGTFTYNSLLQVFGKAGIY 331

Query: 596 DEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFV 655
            EAL++L  +     P D++ YN ++      G  +     I+ M +  + P+  T   V
Sbjct: 332 SEALSILKEMEKNNCPPDLVTYNELVAAYVRAGFHEEGADFIDTMIRKGIMPNAITYTTV 391

Query: 656 FSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEE------KRSDFEDLI 698
            + Y   G  + A+   + +        V T         K+S  E++I
Sbjct: 392 INAYGKAGKEDKALSFFRQMKESGCVPNVCTYNAILGMLGKKSRLEEMI 440


>gi|147825385|emb|CAN75494.1| hypothetical protein VITISV_030525 [Vitis vinifera]
          Length = 821

 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 133/292 (45%), Gaps = 19/292 (6%)

Query: 381 LAEALLDQIS---RCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLF 436
           +A  LLD+IS      + + ++  L A   + K ERAI +F KMR+  L P + TY ++ 
Sbjct: 192 VALRLLDEISVEEYSLDVRAWTTILHAYSRIGKYERAITMFEKMRKTGLSPTLVTYNVML 251

Query: 437 SLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIREL 496
            ++G +              S  +I  +  +M  N ++    +   ++ A G EG++ E 
Sbjct: 252 DVYGKMGR------------SWNKILGLLDEMRSNGLEFDEFTCSTVISACGREGLLDEA 299

Query: 497 IQYFCDSKTP---LGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC 553
            ++F   K+     GT TYN++L    +A     A+ I K+M+    PP+  TYN ++  
Sbjct: 300 RKFFARLKSEGYVAGTFTYNSLLQVFGKAGIYSEALSILKEMEKNNCPPDLVTYNELVAA 359

Query: 554 CSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHD 613
                  +  +  +  M+R G  P  +TYT +I      G  D+AL+    +   G   +
Sbjct: 360 YVRAGFHEEGADFIDTMIRKGIMPNAITYTTVINAYGKAGKEDKALSFFRQMKESGCVPN 419

Query: 614 VLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFH 665
           V  YN IL    +K R++ +  ++  M  N   P+  T + + +   N G H
Sbjct: 420 VCTYNAILGMLGKKSRLEEMIDMLCDMRSNGCAPNSVTWNTMLAMCGNKGMH 471



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 90/407 (22%), Positives = 163/407 (40%), Gaps = 33/407 (8%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ VI+A G+      A     QM+  G  P+  TY+  +  +     L   +++L  M
Sbjct: 387 TYTTVINAYGKAGKEDKALSFFRQMKESGCVPNVCTYNAILGMLGKKSRLEEMIDMLCDM 446

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRC---TNPKPFSAFLAACDTMDKP 411
           + N   P   T  T+   C           +  ++  C    N   F+A + A       
Sbjct: 447 RSNGCAPNSVTWNTMLAMCGNKGMHKYVNRVFREMKSCGFEPNRDTFNALIGAYGRCGSQ 506

Query: 412 ERAIKIFAKM-RQKLRPDIRTYELLFSLF---GNVNA--------------PYEEG---- 449
              +K++ +M +    P + TY  L +     G+  A              P E      
Sbjct: 507 IDVVKMYEEMIKAGFTPCVTTYNALLNALARRGDWEAAESVILDMKSKGFKPNETSYSLM 566

Query: 450 -NMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLL----KALGAEGMIRELIQYFCDSK 504
            N +++  + + I  IE ++   +I  S I ++ L+    K     GM R   Q FC   
Sbjct: 567 LNCYAKGGNGRGIEKIEEEIYNGHIFPSWILLRTLVLANFKRRALMGMERAF-QEFCKHG 625

Query: 505 TPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCS-IIRCFKSA 563
                  +N++L    + +   RA E+ + ++  G+ P+  TYN ++D  +    C+K  
Sbjct: 626 YKPDLVLFNSMLSIFAKNKMYDRAHEMLRLIRESGLQPDLVTYNSLMDMYARGGECWKGE 685

Query: 564 SALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKK 623
             L  +  + G  P  ++Y  +IK     G   EA+  L  +++ GI   ++ YNT +  
Sbjct: 686 EILKGIQ-KSGGKPDLVSYNTVIKGFCRQGLMQEAIRTLSEMTISGIRPCIVTYNTFVAG 744

Query: 624 ACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAME 670
              KG    +E +I  M Q+  +P+  T   V  GY     +  AM+
Sbjct: 745 YSGKGMFSEVEEVISYMIQHDCRPNELTYKIVVDGYCKGKKYKEAMD 791



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 85/446 (19%), Positives = 174/446 (39%), Gaps = 66/446 (14%)

Query: 297 SDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQ 356
           S VI ACGR      A +   +++S G    + TY+  ++           + +LK M++
Sbjct: 284 STVISACGREGLLDEARKFFARLKSEGYVAGTFTYNSLLQVFGKAGIYSEALSILKEMEK 343

Query: 357 NNLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKPER 413
           NN  P   T   L     +A   +     +D + R     N   ++  + A     K ++
Sbjct: 344 NNCPPDLVTYNELVAAYVRAGFHEEGADFIDTMIRKGIMPNAITYTTVINAYGKAGKEDK 403

Query: 414 AIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSA-------------- 458
           A+  F +M++    P++ TY  +  + G  +   E  +M   + S               
Sbjct: 404 ALSFFRQMKESGCVPNVCTYNAILGMLGKKSRLEEMIDMLCDMRSNGCAPNSVTWNTMLA 463

Query: 459 --------KRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP 510
                   K +N +  +M     + +  +   L+ A G  G   ++++ + +      TP
Sbjct: 464 MCGNKGMHKYVNRVFREMKSCGFEPNRDTFNALIGAYGRCGSQIDVVKMYEEMIKAGFTP 523

Query: 511 ---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCS------------ 555
              TYN +L++L    +   A  +   MK+ G  PN  +Y++M++C +            
Sbjct: 524 CVTTYNALLNALARRGDWEAAESVILDMKSKGFKPNETSYSLMLNCYAKGGNGRGIEKIE 583

Query: 556 ------------------IIRCFKSASALVSM------MVRDGFYPQTMTYTALIKILLD 591
                             ++  FK   AL+ M        + G+ P  + + +++ I   
Sbjct: 584 EEIYNGHIFPSWILLRTLVLANFKR-RALMGMERAFQEFCKHGYKPDLVLFNSMLSIFAK 642

Query: 592 YGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
              +D A  +L L+   G+  D++ YN+++      G     E I++ + ++  +PD  +
Sbjct: 643 NKMYDRAHEMLRLIRESGLQPDLVTYNSLMDMYARGGECWKGEEILKGIQKSGGKPDLVS 702

Query: 652 CHFVFSGYVNCGFHNSAMEALQVLSM 677
            + V  G+   G    A+  L  +++
Sbjct: 703 YNTVIKGFCRQGLMQEAIRTLSEMTI 728



 Score = 77.0 bits (188), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 84/378 (22%), Positives = 150/378 (39%), Gaps = 23/378 (6%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVS-DRGLRNGMEVLKI 353
           +++ ++HA  R      A  +  +M+  GL P+  TY+  +       R     + +L  
Sbjct: 211 AWTTILHAYSRIGKYERAITMFEKMRKTGLSPTLVTYNVMLDVYGKMGRSWNKILGLLDE 270

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAE---ALLDQISRCTNPKPFSAFLAACDTMDK 410
           M+ N L+  + T +T+   C +   LD A    A L           +++ L        
Sbjct: 271 MRSNGLEFDEFTCSTVISACGREGLLDEARKFFARLKSEGYVAGTFTYNSLLQVFGKAGI 330

Query: 411 PERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPY-EEGNMFSQVDSAKRINAIEMDM 468
              A+ I  +M +    PD+ TY  L + +  V A + EEG  F  +D+          M
Sbjct: 331 YSEALSILKEMEKNNCPPDLVTYNELVAAY--VRAGFHEEGADF--IDT----------M 376

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQES 525
            R  I  + I+   ++ A G  G   + + +F   K     P   TYN +L  L +    
Sbjct: 377 IRKGIMPNAITYTTVINAYGKAGKEDKALSFFRQMKESGCVPNVCTYNAILGMLGKKSRL 436

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
              +++   M++ G  PN+ T+N M+  C      K  + +   M   GF P   T+ AL
Sbjct: 437 EEMIDMLCDMRSNGCAPNSVTWNTMLAMCGNKGMHKYVNRVFREMKSCGFEPNRDTFNAL 496

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           I      G   + + + + +   G    V  YN +L     +G  +  E +I  M     
Sbjct: 497 IGAYGRCGSQIDVVKMYEEMIKAGFTPCVTTYNALLNALARRGDWEAAESVILDMKSKGF 556

Query: 646 QPDPSTCHFVFSGYVNCG 663
           +P+ ++   + + Y   G
Sbjct: 557 KPNETSYSLMLNCYAKGG 574



 Score = 60.1 bits (144), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/229 (20%), Positives = 89/229 (38%), Gaps = 42/229 (18%)

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID------------------- 552
           + T+LH+     +  RA+ +F++M+  G+ P   TYN+M+D                   
Sbjct: 212 WTTILHAYSRIGKYERAITMFEKMRKTGLSPTLVTYNVMLDVYGKMGRSWNKILGLLDEM 271

Query: 553 -----------CCSIIRC------FKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDF 595
                      C ++I           A    + +  +G+   T TY +L+++    G +
Sbjct: 272 RSNGLEFDEFTCSTVISACGREGLLDEARKFFARLKSEGYVAGTFTYNSLLQVFGKAGIY 331

Query: 596 DEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFV 655
            EAL++L  +     P D++ YN ++      G  +     I+ M +  + P+  T   V
Sbjct: 332 SEALSILKEMEKNNCPPDLVTYNELVAAYVRAGFHEEGADFIDTMIRKGIMPNAITYTTV 391

Query: 656 FSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEE------KRSDFEDLI 698
            + Y   G  + A+   + +        V T         K+S  E++I
Sbjct: 392 INAYGKAGKEDKALSFFRQMKESGCVPNVCTYNAILGMLGKKSRLEEMI 440


>gi|15224671|ref|NP_180698.1| genomes uncoupled 1 protein [Arabidopsis thaliana]
 gi|75206083|sp|Q9SIC9.1|PP178_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g31400, chloroplastic; Flags: Precursor
 gi|4589961|gb|AAD26479.1| unknown protein [Arabidopsis thaliana]
 gi|330253448|gb|AEC08542.1| genomes uncoupled 1 protein [Arabidopsis thaliana]
          Length = 918

 Score =  101 bits (252), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/277 (28%), Positives = 128/277 (46%), Gaps = 16/277 (5%)

Query: 398 FSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVD 456
           FSA ++A       E AI +F  M++  LRP++ TY  +      ++A  + G  F QV 
Sbjct: 271 FSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAV------IDACGKGGMEFKQV- 323

Query: 457 SAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGM---IRELIQYFCDSKTPLGTPTYN 513
            AK  +    +M RN +Q   I+  +LL      G+    R L     + +      +YN
Sbjct: 324 -AKFFD----EMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYN 378

Query: 514 TVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRD 573
           T+L ++ +  +   A EI  QM    I PN  +Y+ +ID  +    F  A  L   M   
Sbjct: 379 TLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYL 438

Query: 574 GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVI 633
           G     ++Y  L+ I    G  +EAL++L  ++  GI  DV+ YN +L    ++G+ D +
Sbjct: 439 GIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEV 498

Query: 634 EFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAME 670
           + +  +M +  V P+  T   +  GY   G +  AME
Sbjct: 499 KKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAME 535



 Score = 89.0 bits (219), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 93/442 (21%), Positives = 180/442 (40%), Gaps = 67/442 (15%)

Query: 294 WSFSDVIHACGRTQNSGLAEQ---LMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEV 350
           ++FS +I A GR   SGL E+   +   M+  GL+P+  TY+  I A       + GME 
Sbjct: 269 YAFSALISAYGR---SGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACG-----KGGMEF 320

Query: 351 LKI------MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQIS-RCTNPKPFS--AF 401
            ++      MQ+N ++P   T  +L   CS+    + A  L D+++ R      FS    
Sbjct: 321 KQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTL 380

Query: 402 LAACDTMDKPERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKR 460
           L A     + + A +I A+M  +++ P++ +Y  +   F       E  N+F ++    R
Sbjct: 381 LDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEM----R 436

Query: 461 INAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLV 520
              I +D                                           +YNT+L    
Sbjct: 437 YLGIALDRV-----------------------------------------SYNTLLSIYT 455

Query: 521 EAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTM 580
           +   S  A++I ++M + GI  +  TYN ++        +     + + M R+   P  +
Sbjct: 456 KVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLL 515

Query: 581 TYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQM 640
           TY+ LI      G + EA+ +       G+  DV+LY+ ++   C+ G +     +I++M
Sbjct: 516 TYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEM 575

Query: 641 HQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDFEDLILA 700
            +  + P+  T + +   +      + + +     S+      +S L E   +    +  
Sbjct: 576 TKEGISPNVVTYNSIIDAFGRSATMDRSADYSNGGSLPFSSSALSALTETEGNRVIQLFG 635

Query: 701 E-DSEAESRILQFCEDSNENLA 721
           +  +E+ +R  + CE+  + L+
Sbjct: 636 QLTTESNNRTTKDCEEGMQELS 657



 Score = 55.8 bits (133), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 102/473 (21%), Positives = 180/473 (38%), Gaps = 61/473 (12%)

Query: 119 GLNNKCYLL--MMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVH 176
           G  N  Y    ++ A  + G  EEA ++   + E YG+ P L  YN+ + AC K   M  
Sbjct: 263 GYGNTVYAFSALISAYGRSGLHEEAISVFNSMKE-YGLRPNLVTYNAVIDACGK-GGMEF 320

Query: 177 ANLC--LDLMDSRMVGKNEVTYTELLKL----AVWQKNLSAVHEIWEDYIKHYSLSIFSL 230
             +    D M    V  + +T+  LL +     +W+   +   E+    I+     +FS 
Sbjct: 321 KQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQ---DVFSY 377

Query: 231 RKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTS-EGRLRSSRLDIPIPLNALPVM 289
              + +  +   +  A+E L  M    +M  +    T  +G  ++ R D    LN    M
Sbjct: 378 NTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFD--EALNLFGEM 435

Query: 290 KVL-----RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGL 344
           + L     R S++ ++    +   S  A  ++ +M S+G++    TY+  +         
Sbjct: 436 RYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKY 495

Query: 345 RNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAA 404
               +V   M++ ++ P   T +TL    SK      A  +  +            + A 
Sbjct: 496 DEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSAL 555

Query: 405 CDTMDKP---ERAIKIFAKM-RQKLRPDIRTYELLFSLFG-----NVNAPYEEGNMFSQV 455
            D + K      A+ +  +M ++ + P++ TY  +   FG     + +A Y  G      
Sbjct: 556 IDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMDRSADYSNGGSLPFS 615

Query: 456 DSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTV 515
            SA                         L AL  E     +IQ F      L T + N  
Sbjct: 616 SSA-------------------------LSAL-TETEGNRVIQLFGQ----LTTESNNRT 645

Query: 516 LHSLVEA-QESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALV 567
                E  QE    +E+F++M    I PN  T++ +++ CS    F+ AS L+
Sbjct: 646 TKDCEEGMQELSCILEVFRKMHQLEIKPNVVTFSAILNACSRCNSFEDASMLL 698


>gi|168059281|ref|XP_001781632.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162666946|gb|EDQ53588.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 871

 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 89/376 (23%), Positives = 161/376 (42%), Gaps = 23/376 (6%)

Query: 297 SDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQ 356
           S +I   GR     +A  +  + Q  G   + + Y   + A       R  ++V + M++
Sbjct: 204 SIMISTLGRLGKVEIALDVFNRAQKAGFGNNVYAYSAMVSAYGRSGRCREALKVFQAMKK 263

Query: 357 NNLKPQDSTIATLSVECSKALELDLAEAL--LDQISR-CTNPK--PFSAFLAACDTMDKP 411
              KP   T  T+   C K   +DL +AL   D++ +    P    F++ +A C      
Sbjct: 264 AGCKPNLITYNTIIDACGKG-GVDLKQALDIFDEMQKEGVEPDRITFNSLIAVCSRGGLW 322

Query: 412 ERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           E + ++FA+M R+ +  DI T+  L      ++A  + G M       +   +I   M  
Sbjct: 323 EDSQRVFAEMQRRGIEQDIFTFNTL------IDAVCKGGQM-------ELAASIMTTMRG 369

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHR 527
            NI  + ++   ++   G  G   E I  + D K     P   +YNT++    +      
Sbjct: 370 KNISPNVVTYSTMIDGYGKLGCFEEAISLYHDMKESGVRPDRVSYNTLIDIYAKLGRFDD 429

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A+   K M+  G+  +  TYN +ID       +K A+ L   M  +G  P  +TY+ALI 
Sbjct: 430 ALIACKDMERVGLKADVVTYNALIDAYGKQGKYKDAACLFDKMKGEGLVPNVLTYSALID 489

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
                G   +  N+       G+  DV+LY++++   C+ G ++    ++++M Q  +QP
Sbjct: 490 SYSKAGMHQDVSNVFTEFKRAGLKPDVVLYSSLIDSCCKCGLVEDAVVLLQEMTQAGIQP 549

Query: 648 DPSTCHFVFSGYVNCG 663
           +  T + +   Y   G
Sbjct: 550 NIVTYNSLIDAYGRYG 565



 Score = 89.0 bits (219), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 72/323 (22%), Positives = 139/323 (43%), Gaps = 24/323 (7%)

Query: 353 IMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRC------TNPKPFSAFLAACD 406
           ++QQ +L+ + S +A++ +  S    L   E  LD  +R        N   +SA ++A  
Sbjct: 189 MVQQVHLRSEWSKLASIMI--STLGRLGKVEIALDVFNRAQKAGFGNNVYAYSAMVSAYG 246

Query: 407 TMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIE 465
              +   A+K+F  M++   +P++ TY  +    G              VD  + ++  +
Sbjct: 247 RSGRCREALKVFQAMKKAGCKPNLITYNTIIDACGK-----------GGVDLKQALDIFD 295

Query: 466 MDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSK---TPLGTPTYNTVLHSLVEA 522
            +M +  ++   I+  +L+      G+  +  + F + +         T+NT++ ++ + 
Sbjct: 296 -EMQKEGVEPDRITFNSLIAVCSRGGLWEDSQRVFAEMQRRGIEQDIFTFNTLIDAVCKG 354

Query: 523 QESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTY 582
            +   A  I   M+   I PN  TY+ MID    + CF+ A +L   M   G  P  ++Y
Sbjct: 355 GQMELAASIMTTMRGKNISPNVVTYSTMIDGYGKLGCFEEAISLYHDMKESGVRPDRVSY 414

Query: 583 TALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642
             LI I    G FD+AL     +   G+  DV+ YN ++    ++G+      + ++M  
Sbjct: 415 NTLIDIYAKLGRFDDALIACKDMERVGLKADVVTYNALIDAYGKQGKYKDAACLFDKMKG 474

Query: 643 NKVQPDPSTCHFVFSGYVNCGFH 665
             + P+  T   +   Y   G H
Sbjct: 475 EGLVPNVLTYSALIDSYSKAGMH 497



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 79/362 (21%), Positives = 155/362 (42%), Gaps = 24/362 (6%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDR-GLRNGMEVLK 352
           +++S ++ A GR+     A ++   M+  G +P+  TY+  I A       L+  +++  
Sbjct: 236 YAYSAMVSAYGRSGRCREALKVFQAMKKAGCKPNLITYNTIIDACGKGGVDLKQALDIFD 295

Query: 353 IMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKP- 411
            MQ+  ++P   T  +L   CS+    + ++ +  ++ R    +    F    D + K  
Sbjct: 296 EMQKEGVEPDRITFNSLIAVCSRGGLWEDSQRVFAEMQRRGIEQDIFTFNTLIDAVCKGG 355

Query: 412 --ERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
             E A  I   MR K + P++ TY  +   +G +    E  +++              DM
Sbjct: 356 QMELAASIMTTMRGKNISPNVVTYSTMIDGYGKLGCFEEAISLYH-------------DM 402

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLG----TPTYNTVLHSLVEAQE 524
             + ++   +S   L+      G   + +   C     +G      TYN ++ +  +  +
Sbjct: 403 KESGVRPDRVSYNTLIDIYAKLGRFDDAL-IACKDMERVGLKADVVTYNALIDAYGKQGK 461

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
              A  +F +MK  G+ PN  TY+ +ID  S     +  S + +   R G  P  + Y++
Sbjct: 462 YKDAACLFDKMKGEGLVPNVLTYSALIDSYSKAGMHQDVSNVFTEFKRAGLKPDVVLYSS 521

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
           LI      G  ++A+ LL  ++  GI  +++ YN+++      G+ D +E +   M  N 
Sbjct: 522 LIDSCCKCGLVEDAVVLLQEMTQAGIQPNIVTYNSLIDAYGRYGQADKLEAVKANM-PNS 580

Query: 645 VQ 646
           VQ
Sbjct: 581 VQ 582



 Score = 62.8 bits (151), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 97/208 (46%), Gaps = 4/208 (1%)

Query: 483 LLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQ-ESHRAMEIFKQMKTC 538
           ++ A G  G  RE ++ F   K     P   TYNT++ +  +   +  +A++IF +M+  
Sbjct: 241 MVSAYGRSGRCREALKVFQAMKKAGCKPNLITYNTIIDACGKGGVDLKQALDIFDEMQKE 300

Query: 539 GIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEA 598
           G+ P+  T+N +I  CS    ++ +  + + M R G      T+  LI  +   G  + A
Sbjct: 301 GVEPDRITFNSLIAVCSRGGLWEDSQRVFAEMQRRGIEQDIFTFNTLIDAVCKGGQMELA 360

Query: 599 LNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
            +++  +  + I  +V+ Y+T++    + G  +    +   M ++ V+PD  + + +   
Sbjct: 361 ASIMTTMRGKNISPNVVTYSTMIDGYGKLGCFEEAISLYHDMKESGVRPDRVSYNTLIDI 420

Query: 659 YVNCGFHNSAMEALQVLSMRMLCEEVST 686
           Y   G  + A+ A + +    L  +V T
Sbjct: 421 YAKLGRFDDALIACKDMERVGLKADVVT 448



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 98/488 (20%), Positives = 190/488 (38%), Gaps = 74/488 (15%)

Query: 105 FVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSF 164
             ++ +   ++   G N   Y  M+ A  + G   EA  +   + ++ G  P L  YN+ 
Sbjct: 218 IALDVFNRAQKAGFGNNVYAYSAMVSAYGRSGRCREALKVFQAM-KKAGCKPNLITYNTI 276

Query: 165 LGACAKLHSMVHANLCLDLMD---SRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK 221
           + AC K    V     LD+ D      V  + +T+  L+ +        +   +WED  +
Sbjct: 277 IDACGK--GGVDLKQALDIFDEMQKEGVEPDRITFNSLIAVC-------SRGGLWEDSQR 327

Query: 222 HYS-LSIFSLRKFVWSFTRLRDL--KSAYETLQHMVALAMMGK------LYINRTSEGRL 272
            ++ +    + + +++F  L D   K     L   +   M GK      +  +   +G  
Sbjct: 328 VFAEMQRRGIEQDIFTFNTLIDAVCKGGQMELAASIMTTMRGKNISPNVVTYSTMIDGYG 387

Query: 273 RSSRLDIPIPL------NALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQP 326
           +    +  I L      + +   +V   +  D+    GR  ++ +A +    M+ +GL+ 
Sbjct: 388 KLGCFEEAISLYHDMKESGVRPDRVSYNTLIDIYAKLGRFDDALIACK---DMERVGLKA 444

Query: 327 SSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKA-LELDLAEAL 385
              TY+  I A       ++   +   M+   L P   T + L    SKA +  D++   
Sbjct: 445 DVVTYNALIDAYGKQGKYKDAACLFDKMKGEGLVPNVLTYSALIDSYSKAGMHQDVSNVF 504

Query: 386 LDQISRCTNPKP--FSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNV 442
            +       P    +S+ + +C      E A+ +  +M Q  ++P+I TY  L   +G  
Sbjct: 505 TEFKRAGLKPDVVLYSSLIDSCCKCGLVEDAVVLLQEMTQAGIQPNIVTYNSLIDAYGR- 563

Query: 443 NAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCD 502
                    + Q D  + + A               +M N ++ +G   M  E+++    
Sbjct: 564 ---------YGQADKLEAVKA---------------NMPNSVQKIGERSM--EVVR---- 593

Query: 503 SKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKS 562
            K P      N   H+ V A     A+ +F +M+  G+ PN  T++ +++ CS     + 
Sbjct: 594 -KPP--PSQQNASDHTGVLA-----AVSVFHEMQQFGLKPNVVTFSAILNACSRCASLQE 645

Query: 563 ASALVSMM 570
           AS L+  M
Sbjct: 646 ASVLLEQM 653


>gi|357475985|ref|XP_003608278.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124359684|gb|ABD32353.2| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355509333|gb|AES90475.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 870

 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 86/365 (23%), Positives = 158/365 (43%), Gaps = 18/365 (4%)

Query: 315 LMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECS 374
           L   M   G+ P ++T++  I+++     L +  E+   M +   +P   T+  L     
Sbjct: 138 LYTDMIQTGVNPETYTFNLLIQSLCESNALDHARELFDKMSEKGCQPNKFTVGILVRGFC 197

Query: 375 KALELDLAEALLD-QISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTY 432
           +A     A   +D ++    N   ++  +++    D  + A K+  +M +K L PD+ T+
Sbjct: 198 RAGRTKQALEFVDGKMGGNVNRVVYNTLVSSFCKQDMNDEAEKLVERMTEKGLLPDVVTF 257

Query: 433 ELLFSLFGNVNAPYEEGNMFS--QVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAE 490
               S        +E   +F   Q+D        E+ + + N+    ++   +LK    E
Sbjct: 258 NSRISALCRAGKVFEASRIFRDMQMDG-------ELGLPKPNV----VTFNLMLKGFCQE 306

Query: 491 GMI---RELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATY 547
           GM+   R L++        +   +YNT L  L+   +      +  +M   GI PN  +Y
Sbjct: 307 GMMEEARSLVETMKKGGNFVSLESYNTWLLGLLRNGKLLEGRSVLDEMVENGIEPNIYSY 366

Query: 548 NIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSL 607
           NI++D          A  L+ +MV +G YP T+TYT L+      G   EA  +L+ +  
Sbjct: 367 NIVMDGLCRNHMMLDARRLMDLMVSNGVYPDTVTYTTLLHGYCSKGKVFEAKAILNEMIR 426

Query: 608 EGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNS 667
           +G   +    NT+L    ++GR    E ++++M++   Q D  TC+ V +G    G    
Sbjct: 427 KGCHPNTYTCNTLLNSLWKEGRKSEAEEMLQKMNEKSYQLDTVTCNIVVNGLCRNGELEK 486

Query: 668 AMEAL 672
           A E +
Sbjct: 487 ASEVV 491



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 81/385 (21%), Positives = 154/385 (40%), Gaps = 44/385 (11%)

Query: 304 GRTQNSGLAE--QLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKP 361
           G  +N  L E   ++ +M   G++P+ ++Y+  +  +  +  + +   ++ +M  N + P
Sbjct: 337 GLLRNGKLLEGRSVLDEMVENGIEPNIYSYNIVMDGLCRNHMMLDARRLMDLMVSNGVYP 396

Query: 362 QDSTIATL-SVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTM-------DKPER 413
              T  TL    CSK    +    L + I +  +P  ++     C+T+        +   
Sbjct: 397 DTVTYTTLLHGYCSKGKVFEAKAILNEMIRKGCHPNTYT-----CNTLLNSLWKEGRKSE 451

Query: 414 AIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNN 472
           A ++  KM +K  + D  T  ++      VN     G               E++ A   
Sbjct: 452 AEEMLQKMNEKSYQLDTVTCNIV------VNGLCRNG---------------ELEKASEV 490

Query: 473 IQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPL-GTPTYNTVLHSLVEAQESHRAMEI 531
           +        N   +LG E  +  L+    +  T +    TY T+++ L +  +   A + 
Sbjct: 491 VSEMWTDGTN---SLGKENPVAGLVNSIHNVSTNVPDVITYTTLINGLCKVGKLEEAKKK 547

Query: 532 FKQMKTCGIPPNAATYNIMI-DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590
           F +M    + P++ TY+  + + C   +   SA  ++  M R+G      TY +LI  L 
Sbjct: 548 FIEMMAKNLHPDSVTYDTFVLNFCKQGK-ISSALRVLKDMERNGCSKTLQTYNSLILGLG 606

Query: 591 DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI-DVIEFIIEQMHQNKVQPDP 649
             G   E   L+D +   GI  D+  YN ++   CE G+  D    + E + +  V P+ 
Sbjct: 607 SKGQIFEMYGLMDEMRERGIHPDICTYNNMINCLCEGGKTKDATSLLHEMLDKGVVSPNV 666

Query: 650 STCHFVFSGYVNCGFHNSAMEALQV 674
           S+   +   +   G    A E   V
Sbjct: 667 SSFKILIKAFCKSGDFKVACELFDV 691



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 124/621 (19%), Positives = 247/621 (39%), Gaps = 78/621 (12%)

Query: 120 LNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANL 179
           +N   Y  ++ + CK    +EA  L+  + E+ G+ P +  +NS + A  +   +  A+ 
Sbjct: 217 VNRVVYNTLVSSFCKQDMNDEAEKLVERMTEK-GLLPDVVTFNSRISALCRAGKVFEASR 275

Query: 180 CLDLMDSRMVGK------NEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYS-LSIFSLRK 232
                D +M G+      N VT+  +LK    +  +     + E   K  + +S+ S   
Sbjct: 276 IF--RDMQMDGELGLPKPNVVTFNLMLKGFCQEGMMEEARSLVETMKKGGNFVSLESYNT 333

Query: 233 FVWSFTRLRDLKSAYETLQHMVALAMMGKLY-INRTSEGRLRSSRLDIPIPLNALPVMKV 291
           ++    R   L      L  MV   +   +Y  N   +G  R+  +     L+A  +M +
Sbjct: 334 WLLGLLRNGKLLEGRSVLDEMVENGIEPNIYSYNIVMDGLCRNHMM-----LDARRLMDL 388

Query: 292 L--------RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRG 343
           +          +++ ++H          A+ ++ +M   G  P+++T +  + ++  +  
Sbjct: 389 MVSNGVYPDTVTYTTLLHGYCSKGKVFEAKAILNEMIRKGCHPNTYTCNTLLNSLWKEGR 448

Query: 344 LRNGMEVLKIMQQNNLKPQDSTIATLSV-------ECSKALEL---------------DL 381
                E+L+ M + + +  D+    + V       E  KA E+               + 
Sbjct: 449 KSEAEEMLQKMNEKSYQ-LDTVTCNIVVNGLCRNGELEKASEVVSEMWTDGTNSLGKENP 507

Query: 382 AEALLDQISRCTNPKP----FSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLF 436
              L++ I   +   P    ++  +     + K E A K F +M  K L PD  TY+   
Sbjct: 508 VAGLVNSIHNVSTNVPDVITYTTLINGLCKVGKLEEAKKKFIEMMAKNLHPDSVTYDTFV 567

Query: 437 SLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIREL 496
             F       ++G    ++ SA R+     DM RN    +  +  +L+  LG++G I E+
Sbjct: 568 LNF------CKQG----KISSALRVLK---DMERNGCSKTLQTYNSLILGLGSKGQIFEM 614

Query: 497 IQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGI-PPNAATYNIMID 552
                + +     P   TYN +++ L E  ++  A  +  +M   G+  PN +++ I+I 
Sbjct: 615 YGLMDEMRERGIHPDICTYNNMINCLCEGGKTKDATSLLHEMLDKGVVSPNVSSFKILIK 674

Query: 553 CCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPH 612
                  FK A  L  + +    + + + Y+ +   LL  G   +A  L +      +  
Sbjct: 675 AFCKSGDFKVACELFDVALSVCGHKEAL-YSLMFNELLAGGKLSDAKELFEASLERSLLS 733

Query: 613 DVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEAL 672
              +Y  ++ K C+ GR+D    +++++       D S+   V  G    G    A E  
Sbjct: 734 KNFMYEDLIDKLCKDGRLDDAHGLLQKLIDKGYCFDHSSFIPVIDGLSKRGNKQQADELG 793

Query: 673 QVLSMRMLCEEVSTLEEKRSD 693
           +++ +         LE+K SD
Sbjct: 794 RIMEL--------ALEDKTSD 806


>gi|218197600|gb|EEC80027.1| hypothetical protein OsI_21710 [Oryza sativa Indica Group]
          Length = 694

 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 86/358 (24%), Positives = 158/358 (44%), Gaps = 17/358 (4%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A + +  M   G+ P+ +TY+  +RA+ +   L   + V+  M+     P   T  TL  
Sbjct: 136 ARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVA 195

Query: 372 ECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDKPERAIKIFAKM-RQKLR 426
              +A ELD AE ++  +    N KP    F++ +       + E A K+F +M R+ L 
Sbjct: 196 AFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLA 255

Query: 427 PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKA 486
           PD+ +Y  L S +  V   +E   +FS++     +  +   +   ++ H+     NL +A
Sbjct: 256 PDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDV---VTFTSLIHATCKAGNLEQA 312

Query: 487 LGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAAT 546
           +     +RE           +   T+  ++    +      A+   ++M+ CGI P+   
Sbjct: 313 VALVAQMRE-------RGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVC 365

Query: 547 YNIMIDC-CSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLV 605
           YN +I+  C + R    A  L+  M      P  +TY+ +I      G+ D A  L   +
Sbjct: 366 YNALINGYCKLGR-MDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKM 424

Query: 606 SLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
             +G+  D + Y+++++  CE+ R++    + E M Q  VQPD  T   +  G+   G
Sbjct: 425 LKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEG 482



 Score = 88.2 bits (217), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/262 (25%), Positives = 117/262 (44%), Gaps = 14/262 (5%)

Query: 412 ERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAI--EMDM 468
           E A+ +   MR     P+  TY  L + F              ++D A+R+ ++  E   
Sbjct: 169 EEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAG----------ELDGAERVVSLMREEGN 218

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRA 528
           A+ N+   +  +  L KA   EG  +   +   +   P    +YNT+L    +    H +
Sbjct: 219 AKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAP-DVVSYNTLLSGYCKVGCLHES 277

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
           + +F +M   G+ P+  T+  +I         + A ALV+ M   G     +T+TALI  
Sbjct: 278 LAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDG 337

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
               G  D+AL  ++ +   GI   V+ YN ++   C+ GR+D+   +I +M   +V+PD
Sbjct: 338 FCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPD 397

Query: 649 PSTCHFVFSGYVNCGFHNSAME 670
             T   + SGY   G  +SA +
Sbjct: 398 VVTYSTIISGYCKVGNLDSAFQ 419



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 92/455 (20%), Positives = 171/455 (37%), Gaps = 62/455 (13%)

Query: 112 MMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKL 171
           M EE     N   +  M+  LCK G +E A  +   +  R G+ P +  YN+ L    K+
Sbjct: 213 MREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEM-VREGLAPDVVSYNTLLSGYCKV 271

Query: 172 HSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNL-SAVHEIWEDYIKHYSLSIFSL 230
             +  +      M  R +  + VT+T L+       NL  AV  + +   +   ++  + 
Sbjct: 272 GCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTF 331

Query: 231 RKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYI-NRTSEGRLRSSRLDIPIPLNALPVM 289
              +  F +   L  A   ++ M    +   +   N    G  +  R+D+   L  +  M
Sbjct: 332 TALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLAREL--IREM 389

Query: 290 KVLR-----WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGL 344
           +  R      ++S +I    +  N   A QL  +M   G+ P + TY   IR +  ++ L
Sbjct: 390 EAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRL 449

Query: 345 RNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAA 404
            +  E+ + M Q  ++P + T  TL     K   ++ A +L D++               
Sbjct: 450 NDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEM--------------- 494

Query: 405 CDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAI 464
                           +R+ + PD+ TY +L +         E   +  ++         
Sbjct: 495 ----------------IRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKL--------Y 530

Query: 465 EMDMARNNIQHSHI----------SMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPT 511
             D   +NI++  +          S+  LLK    +G+++E   + Q   D    L    
Sbjct: 531 HEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSV 590

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAAT 546
           Y+ ++H         +A+   KQM   G  PN+ +
Sbjct: 591 YSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTS 625



 Score = 58.9 bits (141), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 108/596 (18%), Positives = 218/596 (36%), Gaps = 104/596 (17%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y ++++ALC  G LEEA  ++  +    G  P    YN+ + A  +   +  A   + LM
Sbjct: 155 YNILVRALCARGRLEEAVGVVGDM-RGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLM 213

Query: 185 DSRMVGK-NEVTYTELLKLAVWQKNLSAVHEIWEDYIKH-YSLSIFSLRKFVWSFTRLRD 242
                 K N VT+  ++        +    +++++ ++   +  + S    +  + ++  
Sbjct: 214 REEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGC 273

Query: 243 LKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHA 302
           L  +      M    ++  +                                +F+ +IHA
Sbjct: 274 LHESLAVFSEMTQRGLVPDVV-------------------------------TFTSLIHA 302

Query: 303 CGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQ 362
             +  N   A  L+ QM+  GL+ +  T+   I        L + +  ++ M++  ++P 
Sbjct: 303 TCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPS 362

Query: 363 DSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMR 422
                 L     K   +DLA  L+ ++                                 
Sbjct: 363 VVCYNALINGYCKLGRMDLARELIREMEA------------------------------- 391

Query: 423 QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKN 482
           ++++PD+ TY  + S +  V      GN+    DSA ++N     M +  +    I+  +
Sbjct: 392 KRVKPDVVTYSTIISGYCKV------GNL----DSAFQLN---QKMLKKGVLPDAITYSS 438

Query: 483 LLKALGAEGMIRELIQYFCDSKTPLGTP----TYNTVLHSLVEAQESHRAMEIFKQMKTC 538
           L++ L  E  + +  + F ++   LG      TY T++    +     +A+ +  +M   
Sbjct: 439 LIRGLCEEKRLNDACELF-ENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRK 497

Query: 539 GIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEA 598
           G+ P+  TY+++I+  S     K A  L+  +  +   P  + Y AL+ +     +F   
Sbjct: 498 GVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALM-LCCSKAEFKSV 556

Query: 599 LNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
           + L                   LK  C KG +   + + + M     + D S    +  G
Sbjct: 557 VAL-------------------LKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHG 597

Query: 659 YVNCGFHNSAME-ALQVLSMRMLCEEVSTLEEKRSDFEDLILAEDSEAESRILQFC 713
           +   G    A+    Q+L         ST+   R  FE+ ++ E   A   +L  C
Sbjct: 598 HCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMVVEADNAIQDLLTCC 653


>gi|449460383|ref|XP_004147925.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like [Cucumis sativus]
 gi|449516585|ref|XP_004165327.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like [Cucumis sativus]
          Length = 701

 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 119/560 (21%), Positives = 222/560 (39%), Gaps = 87/560 (15%)

Query: 121 NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLC 180
           N + Y ++++  CK    E+   L+ ++ E  G+ P +  Y + + A AK  +++ A   
Sbjct: 148 NLQTYNILIKISCKKRQFEKGKGLLTWMFEN-GLNPDILSYGTLINALAKSGNLLDAVEL 206

Query: 181 LDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRL 240
            D M  R V  + + Y  L+   + + +    +EIW+  +   S+               
Sbjct: 207 FDEMSVRGVNPDVMCYNILIDGFLRKGDFVKANEIWKRLLTESSVY-------------- 252

Query: 241 RDLKSAYETLQHMV-ALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDV 299
                + ET   M+  L  +GKL  +     R++ +     +            ++FS +
Sbjct: 253 ----PSVETYNIMINGLCKLGKLDESMEMWNRMKKNEKSPDL------------FTFSSM 296

Query: 300 IHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNL 359
           IH   +  N   AE++  +M   GL P   TY+  +  +     L    E+  +M +NN 
Sbjct: 297 IHGLSKAGNFNAAEKVFQEMIESGLSPDVRTYNAMLSGLFRTGKLNKCFELWNVMSKNN- 355

Query: 360 KPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFA 419
                                           C N   ++  +       K E+AI  + 
Sbjct: 356 --------------------------------CCNIVSYNMLIQGLLDNKKVEQAICYWQ 383

Query: 420 KMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN-NIQHSH 477
            + ++ L+ D  TY LL      +N   + G     ++ A RI    ++ A N       
Sbjct: 384 LLHERGLKADSTTYGLL------INGLCKNG----YLNKALRI----LEEAENEGADLDT 429

Query: 478 ISMKNLLKALGAEGMIR---ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQ 534
            +  +++  L  +GM+    ELI     ++  L +  +N++++  V A +   A+ + ++
Sbjct: 430 FAYSSMVHGLCKKGMLEQAVELIHQMKKNRRKLNSHVFNSLINGYVRAFKLEEAISVLRE 489

Query: 535 MKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGD 594
           MK+    P   +YN +I+       F  A   +  M+ +G  P  +TY+ LI  L     
Sbjct: 490 MKSKDCAPTVVSYNTIINGLCKAERFSDAYLSLKEMLEEGLKPDMITYSLLIDGLCRGEK 549

Query: 595 FDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHF 654
            D ALNL      + +  D+ ++N I+   C   ++DV   I  QM Q    PD  T + 
Sbjct: 550 VDMALNLWHQCINKRLKPDLQMHNIIIHGLCTAQKVDVALEIFTQMRQVNCVPDLVTHNT 609

Query: 655 VFSGYVNCGFHNSAMEALQV 674
           +  G    G     +EAL++
Sbjct: 610 IMEGLYKAG---DCVEALKI 626



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 81/164 (49%), Gaps = 1/164 (0%)

Query: 508 GTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALV 567
           G  ++N++L++ +E+ +   A   F   +T G+ PN  TYNI+I      R F+    L+
Sbjct: 113 GIRSFNSMLNAFIESNQWREAELFFTYFQTAGMSPNLQTYNILIKISCKKRQFEKGKGLL 172

Query: 568 SMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEK 627
           + M  +G  P  ++Y  LI  L   G+  +A+ L D +S+ G+  DV+ YN ++     K
Sbjct: 173 TWMFENGLNPDILSYGTLINALAKSGNLLDAVELFDEMSVRGVNPDVMCYNILIDGFLRK 232

Query: 628 GR-IDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAME 670
           G  +   E     + ++ V P   T + + +G    G  + +ME
Sbjct: 233 GDFVKANEIWKRLLTESSVYPSVETYNIMINGLCKLGKLDESME 276



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 81/376 (21%), Positives = 152/376 (40%), Gaps = 26/376 (6%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           SF+ +++A   +     AE      Q+ G+ P+  TY+  I+     R    G  +L  M
Sbjct: 116 SFNSMLNAFIESNQWREAELFFTYFQTAGMSPNLQTYNILIKISCKKRQFEKGKGLLTWM 175

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQIS-RCTNPKP------FSAFLAACDT 407
            +N L P   +  TL    +K+  L  A  L D++S R  NP           FL   D 
Sbjct: 176 FENGLNPDILSYGTLINALAKSGNLLDAVELFDEMSVRGVNPDVMCYNILIDGFLRKGDF 235

Query: 408 MDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMD 467
           +   E   ++  +    + P + TY ++      +N   + G +   ++   R       
Sbjct: 236 VKANEIWKRLLTE--SSVYPSVETYNIM------INGLCKLGKLDESMEMWNR------- 280

Query: 468 MARNNIQHSHISMKNLLKALGAEG---MIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQE 524
           M +N       +  +++  L   G      ++ Q   +S       TYN +L  L    +
Sbjct: 281 MKKNEKSPDLFTFSSMIHGLSKAGNFNAAEKVFQEMIESGLSPDVRTYNAMLSGLFRTGK 340

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
            ++  E++  M       N  +YN++I      +  + A     ++   G    + TY  
Sbjct: 341 LNKCFELWNVMSKNNC-CNIVSYNMLIQGLLDNKKVEQAICYWQLLHERGLKADSTTYGL 399

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
           LI  L   G  ++AL +L+    EG   D   Y++++   C+KG ++    +I QM +N+
Sbjct: 400 LINGLCKNGYLNKALRILEEAENEGADLDTFAYSSMVHGLCKKGMLEQAVELIHQMKKNR 459

Query: 645 VQPDPSTCHFVFSGYV 660
            + +    + + +GYV
Sbjct: 460 RKLNSHVFNSLINGYV 475



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 63/280 (22%), Positives = 117/280 (41%), Gaps = 17/280 (6%)

Query: 411 PERAIKIFAKMRQKL--RPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
           P++A+ +F  M       P IR++  + + F   N   E    F+   +A          
Sbjct: 94  PDQALNLFQNMVDIFGCNPGIRSFNSMLNAFIESNQWREAELFFTYFQTAG--------- 144

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRA 528
              N+Q  +I +K   K    E     L   F +   P    +Y T++++L ++     A
Sbjct: 145 MSPNLQTYNILIKISCKKRQFEKGKGLLTWMFENGLNP-DILSYGTLINALAKSGNLLDA 203

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIR---CFKSASALVSMMVRDGFYPQTMTYTAL 585
           +E+F +M   G+ P+   YNI+ID    +R     K+      ++     YP   TY  +
Sbjct: 204 VELFDEMSVRGVNPDVMCYNILID--GFLRKGDFVKANEIWKRLLTESSVYPSVETYNIM 261

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           I  L   G  DE++ + + +       D+  +++++    + G  +  E + ++M ++ +
Sbjct: 262 INGLCKLGKLDESMEMWNRMKKNEKSPDLFTFSSMIHGLSKAGNFNAAEKVFQEMIESGL 321

Query: 646 QPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVS 685
            PD  T + + SG    G  N   E   V+S    C  VS
Sbjct: 322 SPDVRTYNAMLSGLFRTGKLNKCFELWNVMSKNNCCNIVS 361



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 87/511 (17%), Positives = 203/511 (39%), Gaps = 26/511 (5%)

Query: 93  ILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERY 152
           ++N  A+S + L  +E +  M  + +  +  CY +++    + G   +A+ +   L    
Sbjct: 190 LINALAKSGNLLDAVELFDEMSVRGVNPDVMCYNILIDGFLRKGDFVKANEIWKRLLTES 249

Query: 153 GIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAV 212
            +YP +  YN  +    KL  +  +    + M       +  T++ ++       N +A 
Sbjct: 250 SVYPSVETYNIMINGLCKLGKLDESMEMWNRMKKNEKSPDLFTFSSMIHGLSKAGNFNAA 309

Query: 213 HEIWEDYIKH-YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGR 271
            +++++ I+   S  + +    +    R   L   +E    M        +  N   +G 
Sbjct: 310 EKVFQEMIESGLSPDVRTYNAMLSGLFRTGKLNKCFELWNVMSKNNCCNIVSYNMLIQGL 369

Query: 272 LRSSRLDIPIPLNAL---PVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSS 328
           L + +++  I    L     +K    ++  +I+   +      A +++ + ++ G    +
Sbjct: 370 LDNKKVEQAICYWQLLHERGLKADSTTYGLLINGLCKNGYLNKALRILEEAENEGADLDT 429

Query: 329 HTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ 388
             Y   +  +     L   +E++  M++N  K       +L     +A +L+ A ++L +
Sbjct: 430 FAYSSMVHGLCKKGMLEQAVELIHQMKKNRRKLNSHVFNSLINGYVRAFKLEEAISVLRE 489

Query: 389 ISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMR----QKLRPDIRTYELLFSLFGNVNA 444
           +          ++    + + K ER    +  ++    + L+PD+ TY LL         
Sbjct: 490 MKSKDCAPTVVSYNTIINGLCKAERFSDAYLSLKEMLEEGLKPDMITYSLLIDGLCRGEK 549

Query: 445 PYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSK 504
                N++ Q  + +    ++ D+  +NI         ++  L     +   ++ F   +
Sbjct: 550 VDMALNLWHQCINKR----LKPDLQMHNI---------IIHGLCTAQKVDVALEIFTQMR 596

Query: 505 TPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID-CCSIIRCF 560
                P   T+NT++  L +A +   A++I+ ++   G+ P+  +YNI     CS  R  
Sbjct: 597 QVNCVPDLVTHNTIMEGLYKAGDCVEALKIWDRILEAGLQPDIISYNITFKGLCSCARVS 656

Query: 561 KSASALVSMMVRDGFYPQTMTYTALIKILLD 591
            +   L   + R G  P   T+  L++ ++D
Sbjct: 657 DAIEFLYDALDR-GILPNAPTWNVLVRAVVD 686


>gi|357122970|ref|XP_003563186.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Brachypodium distachyon]
          Length = 675

 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 87/361 (24%), Positives = 155/361 (42%), Gaps = 19/361 (5%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLG-LQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           + + +I A G       AE L L+    G ++P +  Y+  ++  V    L+N  +VL  
Sbjct: 272 AVTALISALGGAGRVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEQVLDE 331

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMD 409
           M    + P ++T + L    ++A   + A  LL ++      KP    FS  LA      
Sbjct: 332 MSDCGVAPDEATYSLLVDAYTRAGRWESARILLKEME-ADGVKPSSYVFSRILAGFRDRG 390

Query: 410 KPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
             ++A  +  +M    ++PD   Y ++   FG  N      + F+++    R   IE D+
Sbjct: 391 DWQKAFAVLREMHASGVQPDRHFYNVMIDTFGKYNCLGHAMDAFNRM----REEGIEPDV 446

Query: 469 AR-NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHR 527
              N +  +H       +  G      EL +   +S  P GT TYN +++ L E +    
Sbjct: 447 VTWNTLIDAH-------RKGGRHDRAMELFEEMRESNCPPGTTTYNIMINLLGEQERWVG 499

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
              +  +MK  G+ PN  TY  ++D       FK A   + +M  DG  P    Y AL+ 
Sbjct: 500 VETMLSEMKEQGLVPNIITYTTLVDVYGRSGRFKEAIECIEVMKADGLKPSPTMYHALVN 559

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
                G  D ALN++  +  +G+    ++ N+++    E  R+     +++ M +N ++P
Sbjct: 560 AYAQRGLADHALNVVKAMRADGLEASTVVLNSLMNAFGEDRRVVEAFSVLQFMKENDLRP 619

Query: 648 D 648
           D
Sbjct: 620 D 620



 Score = 72.8 bits (177), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 89/407 (21%), Positives = 144/407 (35%), Gaps = 89/407 (21%)

Query: 270 GRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSH 329
           G LR SRL+   PL            FSD+I A  R      A  L+   Q++GL P S+
Sbjct: 224 GDLRESRLEPDAPL------------FSDLISAFARAALPDAALDLLASAQAIGLTPRSN 271

Query: 330 TYDGFIRAIV-SDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ 388
                I A+  + R        L+      +KP+      L     K   L  AE +LD+
Sbjct: 272 AVTALISALGGAGRVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEQVLDE 331

Query: 389 ISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEE 448
           +S C                                + PD  TY LL             
Sbjct: 332 MSDC-------------------------------GVAPDEATYSLL------------- 347

Query: 449 GNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLG 508
                 VD+  R    E             S + LLK + A+G+             P  
Sbjct: 348 ------VDAYTRAGRWE-------------SARILLKEMEADGV------------KP-S 375

Query: 509 TPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVS 568
           +  ++ +L    +  +  +A  + ++M   G+ P+   YN+MID      C   A    +
Sbjct: 376 SYVFSRILAGFRDRGDWQKAFAVLREMHASGVQPDRHFYNVMIDTFGKYNCLGHAMDAFN 435

Query: 569 MMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
            M  +G  P  +T+  LI      G  D A+ L + +     P     YN ++    E+ 
Sbjct: 436 RMREEGIEPDVVTWNTLIDAHRKGGRHDRAMELFEEMRESNCPPGTTTYNIMINLLGEQE 495

Query: 629 RIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
           R   +E ++ +M +  + P+  T   +   Y   G    A+E ++V+
Sbjct: 496 RWVGVETMLSEMKEQGLVPNIITYTTLVDVYGRSGRFKEAIECIEVM 542


>gi|225454300|ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial [Vitis vinifera]
 gi|297745328|emb|CBI40408.3| unnamed protein product [Vitis vinifera]
          Length = 765

 Score =  100 bits (250), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 91/385 (23%), Positives = 162/385 (42%), Gaps = 32/385 (8%)

Query: 324 LQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ-QNNLKPQDSTIATLSVECSKALELDLA 382
           ++P   TY+  I  +        G+ +++ M+ Q    P   T   L     KA  ++ A
Sbjct: 376 VEPDVITYNTLIDGLCKVGRQEEGLGLVERMRSQPRCMPNTVTYNCLIDGYCKASMIEAA 435

Query: 383 EALLDQISRCTNPKPFSAFLAACDTMDKPER---AIKIFAKMRQK-LRPDIRTYELLFSL 438
             L DQ+++   P          D M K  R   A++ F +M+ K L+ +  TY  L   
Sbjct: 436 RELFDQMNKDGVPPNVVTLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGNAVTYTALIRA 495

Query: 439 FGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQ 498
           F NVN   +   +F +             M         I    L+  L   G +     
Sbjct: 496 FCNVNNIEKAMELFDE-------------MLEAGCSPDAIVYYTLISGLSQAGKLDRASF 542

Query: 499 YFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCS 555
                K    +P   ++N +++      +   A E+ K+M+  GI P+  TYN +I   S
Sbjct: 543 VLSKMKEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISHFS 602

Query: 556 IIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL-DLVSLEGIPHDV 614
               F +A  L+  MV++G  P  +TY ALI      G+ DEA+ +  D+ S   +P + 
Sbjct: 603 KTGDFSTAHRLMKKMVKEGLVPTVVTYGALIHAYCLNGNLDEAMKIFRDMSSTSKVPPNT 662

Query: 615 LLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEAL-- 672
           ++YN ++   C K ++D+   +++ M    V+P+ +T + +F G     + + A E +  
Sbjct: 663 VIYNILINSLCRKNQVDLALSLMDDMKVKGVKPNTNTFNAMFKGLQEKNWLSKAFELMDR 722

Query: 673 --------QVLSMRMLCEEVSTLEE 689
                     ++M +L E +S + E
Sbjct: 723 MTEHACNPDYITMEILTEWLSAVGE 747



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 63/284 (22%), Positives = 114/284 (40%), Gaps = 21/284 (7%)

Query: 412 ERAIKIFAKMRQK------LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIE 465
           + A+++F KM         + PD+ TY  L      V    EEG           +  +E
Sbjct: 357 DEALEVFEKMNGGESNGFLVEPDVITYNTLIDGLCKV-GRQEEG-----------LGLVE 404

Query: 466 MDMARNNIQHSHISMKNLLKALGAEGMI---RELIQYFCDSKTPLGTPTYNTVLHSLVEA 522
              ++     + ++   L+       MI   REL         P    T NT++  + + 
Sbjct: 405 RMRSQPRCMPNTVTYNCLIDGYCKASMIEAARELFDQMNKDGVPPNVVTLNTLVDGMCKH 464

Query: 523 QESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTY 582
              + A+E F +M+  G+  NA TY  +I     +   + A  L   M+  G  P  + Y
Sbjct: 465 GRINGAVEFFNEMQGKGLKGNAVTYTALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVY 524

Query: 583 TALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642
             LI  L   G  D A  +L  +   G   D++ +N ++   C K ++D    ++++M  
Sbjct: 525 YTLISGLSQAGKLDRASFVLSKMKEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMEN 584

Query: 643 NKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
             ++PD  T + + S +   G  ++A   ++ +    L   V T
Sbjct: 585 AGIKPDGVTYNTLISHFSKTGDFSTAHRLMKKMVKEGLVPTVVT 628



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 75/386 (19%), Positives = 147/386 (38%), Gaps = 51/386 (13%)

Query: 299 VIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM---Q 355
           ++ A GR +       L+ +M+ + +QP+  T+   I  +   R +   +EV + M   +
Sbjct: 311 LLTALGRAREFKRMNTLLAEMKEMDIQPNVVTFGILINHLCKFRRVDEALEVFEKMNGGE 370

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAI 415
            N    +   I                  L+D + +                + + E  +
Sbjct: 371 SNGFLVEPDVITY--------------NTLIDGLCK----------------VGRQEEGL 400

Query: 416 KIFAKMRQKLR--PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNI 473
            +  +MR + R  P+  TY  L   +   +       +F Q             M ++ +
Sbjct: 401 GLVERMRSQPRCMPNTVTYNCLIDGYCKASMIEAARELFDQ-------------MNKDGV 447

Query: 474 QHSHISMKNLLKALGAEGMIRELIQYFCD--SKTPLGTP-TYNTVLHSLVEAQESHRAME 530
             + +++  L+  +   G I   +++F +   K   G   TY  ++ +        +AME
Sbjct: 448 PPNVVTLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGNAVTYTALIRAFCNVNNIEKAME 507

Query: 531 IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590
           +F +M   G  P+A  Y  +I   S       AS ++S M   GF P  +++  LI    
Sbjct: 508 LFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAGFSPDIVSFNVLINGFC 567

Query: 591 DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650
                DEA  +L  +   GI  D + YNT++    + G       ++++M +  + P   
Sbjct: 568 RKNKLDEAYEMLKEMENAGIKPDGVTYNTLISHFSKTGDFSTAHRLMKKMVKEGLVPTVV 627

Query: 651 TCHFVFSGYVNCGFHNSAMEALQVLS 676
           T   +   Y   G  + AM+  + +S
Sbjct: 628 TYGALIHAYCLNGNLDEAMKIFRDMS 653



 Score = 67.0 bits (162), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 67/291 (23%), Positives = 115/291 (39%), Gaps = 21/291 (7%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A +   +MQ  GL+ ++ TY   IRA  +   +   ME+   M +    P      TL  
Sbjct: 470 AVEFFNEMQGKGLKGNAVTYTALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVYYTLIS 529

Query: 372 ECSKALELDLAEALLDQISRCT-NPK--PFSAFLAACDTMDKPERAIKIFAKMRQK-LRP 427
             S+A +LD A  +L ++     +P    F+  +      +K + A ++  +M    ++P
Sbjct: 530 GLSQAGKLDRASFVLSKMKEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAGIKP 589

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL 487
           D  TY  L S              FS+       + +   M +  +  + ++   L+ A 
Sbjct: 590 DGVTYNTLIS-------------HFSKTGDFSTAHRLMKKMVKEGLVPTVVTYGALIHAY 636

Query: 488 GAEGMIRELIQYFCD----SKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPN 543
              G + E ++ F D    SK P  T  YN +++SL    +   A+ +   MK  G+ PN
Sbjct: 637 CLNGNLDEAMKIFRDMSSTSKVPPNTVIYNILINSLCRKNQVDLALSLMDDMKVKGVKPN 696

Query: 544 AATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGD 594
             T+N M            A  L+  M      P  +T   L + L   G+
Sbjct: 697 TNTFNAMFKGLQEKNWLSKAFELMDRMTEHACNPDYITMEILTEWLSAVGE 747



 Score = 43.1 bits (100), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 73/363 (20%), Positives = 133/363 (36%), Gaps = 59/363 (16%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y  ++  LCK G  EE   L+  +  +    P    YN  +    K   +  A    D M
Sbjct: 383 YNTLIDGLCKVGRQEEGLGLVERMRSQPRCMPNTVTYNCLIDGYCKASMIEAARELFDQM 442

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYSLSIFSLRKFVWSFTRLRDL 243
           +   V  N VT   L+        ++   E + +   K    +  +    + +F  + ++
Sbjct: 443 NKDGVPPNVVTLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGNAVTYTALIRAFCNVNNI 502

Query: 244 KSAYETLQHMV----------------ALAMMGKL--------------------YINRT 267
           + A E    M+                 L+  GKL                      N  
Sbjct: 503 EKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAGFSPDIVSFNVL 562

Query: 268 SEGRLRSSRLDIPIPLNALPVMKVLR--------WSFSDVIHACGRTQNSGLAEQLMLQM 319
             G  R ++LD      A  ++K +          +++ +I    +T +   A +LM +M
Sbjct: 563 INGFCRKNKLD-----EAYEMLKEMENAGIKPDGVTYNTLISHFSKTGDFSTAHRLMKKM 617

Query: 320 QSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVE--CSKAL 377
              GL P+  TY   I A   +  L   M++ + M   +  P ++ I  + +   C K  
Sbjct: 618 VKEGLVPTVVTYGALIHAYCLNGNLDEAMKIFRDMSSTSKVPPNTVIYNILINSLCRKN- 676

Query: 378 ELDLAEALLDQISRCTNPKP----FSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTY 432
           ++DLA +L+D + +    KP    F+A        +   +A ++  +M +    PD  T 
Sbjct: 677 QVDLALSLMDDM-KVKGVKPNTNTFNAMFKGLQEKNWLSKAFELMDRMTEHACNPDYITM 735

Query: 433 ELL 435
           E+L
Sbjct: 736 EIL 738


>gi|302791141|ref|XP_002977337.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
 gi|300154707|gb|EFJ21341.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
          Length = 636

 Score =  100 bits (250), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 99/388 (25%), Positives = 160/388 (41%), Gaps = 22/388 (5%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           W+++ +I+   +      A  L+ +M+  GL P+  TY   I        +    ++ + 
Sbjct: 43  WTYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQ 102

Query: 354 MQQNNLKPQDSTIATL-SVECSKALELDLAEALLDQI-SRCTNPKPFS--AFLAACDTMD 409
           M +N   P   T  TL S  C   L +D A  LLD++  R   P  FS    +A      
Sbjct: 103 MVENGCMPNLVTYNTLLSGLCRNGL-MDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTG 161

Query: 410 KPERAIKIFA-KMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
           K + A+K+F         PD+  Y  L +         E   +F ++    R N+ E D+
Sbjct: 162 KIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKTGRLDEACKLFEKM----RENSCEPDV 217

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQES 525
                    ++   L+  L     ++E  Q     +    TP   TY++++  L +  + 
Sbjct: 218 ---------VTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQV 268

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
             A E+FK+M   GI PN  TYN +I    +     SA  L+  M   G  P  +TY  L
Sbjct: 269 RDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTL 328

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           I  L   G   EA  L   +  +    DV+ Y+ ++   C+  RID+   + + M +  V
Sbjct: 329 IDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAV 388

Query: 646 QPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
            PD  T   +  GY N G  + A   L+
Sbjct: 389 LPDVVTFSTLVEGYCNAGLVDDAERLLE 416



 Score = 97.4 bits (241), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 120/591 (20%), Positives = 232/591 (39%), Gaps = 42/591 (7%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLG-ERYGIYPILPVYNSFLGACAKLHSMVHANLCLDL 183
           + +M+  LCK   L EA+   YF   ++ G  P    YN  +    K+H +  A L L  
Sbjct: 10  WTIMIDGLCKANRLPEATT--YFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKE 67

Query: 184 MDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSL-SIFSLRKFVWSFTRLRD 242
           M    +  N VTY+ ++     Q  +   ++++   +++  + ++ +    +    R   
Sbjct: 68  MKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGL 127

Query: 243 LKSAYETLQHMVALAMM-GKLYINRTSEGRLRSSRLDIPIPL---NALPVMKVLRWSFSD 298
           +  AYE L  M    +   K   +    G  ++ ++D+ + +   N+         ++S 
Sbjct: 128 MDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYST 187

Query: 299 VIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNN 358
           +I    +T     A +L  +M+    +P   T+   +  +     L+   +VL+ M+  N
Sbjct: 188 LIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRN 247

Query: 359 LKPQDSTIATL-SVECSKALELDLAEALLDQISRCTNPK--PFSAFLAACDTMDKPERAI 415
             P   T ++L    C      D  E     I R   P    +++ +      +  + A+
Sbjct: 248 CTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSAL 307

Query: 416 KIFAKMRQK-LRPDIRTYELLFS-------------LFGNVNAPYEEGNMFSQ---VDSA 458
            +  +M      PDI TY  L               LFG++ A +   ++ +    +   
Sbjct: 308 LLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGF 367

Query: 459 KRINAIEM------DMARNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGT 509
            ++  I+M      DM +  +    ++   L++     G++ +   L++    S      
Sbjct: 368 CKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDV 427

Query: 510 PTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASA--LV 567
            TY +++    +      A  + K+M   G  PN  TY  +ID  +  R  K   A  L+
Sbjct: 428 YTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALID--AFCRAGKPTVAYKLL 485

Query: 568 SMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLD-LVSLEGIPHDVLLYNTILKKACE 626
             MV +G  P  +TY +LI      GD +EA  +L+ L   E    D+  Y  ++   C 
Sbjct: 486 EEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKMLERLERDENCKADMFAYRVMMDGLCR 545

Query: 627 KGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSM 677
            GR+     ++E + Q+   P       +  G         AME L+ +++
Sbjct: 546 TGRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQGKELGKAMEVLEEMTL 596



 Score = 75.5 bits (184), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 74/168 (44%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TY+TV+H      +   A ++F+QM   G  PN  TYN ++           A  L+  M
Sbjct: 79  TYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEM 138

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
              G  P   +Y  L+  L   G  D AL + +  S    P DV+ Y+T++   C+ GR+
Sbjct: 139 RERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKTGRL 198

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678
           D    + E+M +N  +PD  T   +  G         A + L+ +  R
Sbjct: 199 DEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDR 246



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 72/163 (44%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           T+  ++  L +A     A   F +MK  G  PN  TYN++I+    +     A  L+  M
Sbjct: 9   TWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEM 68

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
              G  P  +TY+ +I         D A  L   +   G   +++ YNT+L   C  G +
Sbjct: 69  KESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLM 128

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           D    ++++M +  +QPD  +   + +G    G  + A++  +
Sbjct: 129 DEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFE 171



 Score = 53.5 bits (127), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 60/272 (22%), Positives = 108/272 (39%), Gaps = 18/272 (6%)

Query: 411 PERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
           PE A   FAKM++K   P+  TY +L + F  V+  +    +  ++         E  +A
Sbjct: 24  PE-ATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMK--------ESGLA 74

Query: 470 RNNIQHSHI--SMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHR 527
            N + +S +        K   A  + R++++  C         TYNT+L  L        
Sbjct: 75  PNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLV----TYNTLLSGLCRNGLMDE 130

Query: 528 AMEIFKQMKTCGIPPNAATYN-IMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
           A E+  +M+  G+ P+  +Y+ +M   C   +    A  +          P  + Y+ LI
Sbjct: 131 AYELLDEMRERGLQPDKFSYDTLMAGLCKTGK-IDMALKVFEDNSNGDCPPDVVAYSTLI 189

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
             L   G  DEA  L + +       DV+ +  ++   C+  R+   + ++E M      
Sbjct: 190 AGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCT 249

Query: 647 PDPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678
           P+  T   +  G    G    A E  + + +R
Sbjct: 250 PNVITYSSLIDGLCKTGQVRDAQEVFKRMIVR 281



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 57/138 (41%)

Query: 543 NAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL 602
           N  T+ IMID          A+   + M + G  P   TY  LI           A  LL
Sbjct: 6   NVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLL 65

Query: 603 DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNC 662
             +   G+  +V+ Y+T++   C + ++D    +  QM +N   P+  T + + SG    
Sbjct: 66  KEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRN 125

Query: 663 GFHNSAMEALQVLSMRML 680
           G  + A E L  +  R L
Sbjct: 126 GLMDEAYELLDEMRERGL 143


>gi|15231863|ref|NP_190938.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174107|sp|Q9LFF1.1|PP281_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g53700, chloroplastic; AltName: Full=Protein MATERNAL
           EFFECT EMBRYO ARREST 40; Flags: Precursor
 gi|6729521|emb|CAB67677.1| putative protein [Arabidopsis thaliana]
 gi|15982931|gb|AAL09812.1| AT3g53700/F4P12_400 [Arabidopsis thaliana]
 gi|332645608|gb|AEE79129.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 754

 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 110/516 (21%), Positives = 203/516 (39%), Gaps = 88/516 (17%)

Query: 152 YGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSA 211
           +GI P +  +N  + A  + H +  A L L+ M S  +  +E T+T +++  + + +L  
Sbjct: 183 WGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDG 242

Query: 212 VHEIWEDYIKHY-SLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEG 270
              I E  ++   S S  S+   V  F +   ++ A   +Q M                 
Sbjct: 243 ALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEM----------------- 285

Query: 271 RLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHT 330
               S  D   P          +++F+ +++   +  +   A ++M  M   G  P  +T
Sbjct: 286 ----SNQDGFFPD---------QYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYT 332

Query: 331 YDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQIS 390
           Y+  I  +     ++  +EVL  M   +  P   T  TL     K  +++ A  L   ++
Sbjct: 333 YNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLT 392

Query: 391 R-------CTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNV 442
                   CT    F++ +           A+++F +MR K   PD  TY +L       
Sbjct: 393 SKGILPDVCT----FNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLID----- 443

Query: 443 NAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCD 502
                     S     K   A+                 N+LK +   G  R +I     
Sbjct: 444 ----------SLCSKGKLDEAL-----------------NMLKQMELSGCARSVI----- 471

Query: 503 SKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKS 562
                   TYNT++    +A ++  A EIF +M+  G+  N+ TYN +ID     R  + 
Sbjct: 472 --------TYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVED 523

Query: 563 ASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILK 622
           A+ L+  M+ +G  P   TY +L+      GD  +A +++  ++  G   D++ Y T++ 
Sbjct: 524 AAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLIS 583

Query: 623 KACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
             C+ GR++V   ++  +    +   P   + V  G
Sbjct: 584 GLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQG 619



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 104/501 (20%), Positives = 190/501 (37%), Gaps = 71/501 (14%)

Query: 196 YTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFT-------RLRDLKSAYE 248
           Y  +L L V   +L  V       I H  +S++ ++  V +F        R   L+ A  
Sbjct: 157 YNRMLNLLVDGNSLKLVE------ISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAIL 210

Query: 249 TLQHMVALAMM-GKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWS---FSDVIHA-C 303
            L+ M +  ++  +       +G +    LD  + +    V     WS    + ++H  C
Sbjct: 211 MLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFC 270

Query: 304 --GRTQNSGLAEQLMLQMQSL-GLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLK 360
             GR ++   A   + +M +  G  P  +T++  +  +     +++ +E++ +M Q    
Sbjct: 271 KEGRVED---ALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYD 327

Query: 361 PQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAK 420
           P   T  ++     K  E+  A  +LDQ+                               
Sbjct: 328 PDVYTYNSVISGLCKLGEVKEAVEVLDQM------------------------------- 356

Query: 421 MRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISM 480
           + +   P+  TY  L S     N          QV+ A  +  +   +    I     + 
Sbjct: 357 ITRDCSPNTVTYNTLISTLCKEN----------QVEEATELARV---LTSKGILPDVCTF 403

Query: 481 KNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKT 537
            +L++ L      R  ++ F + ++    P   TYN ++ SL    +   A+ + KQM+ 
Sbjct: 404 NSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMEL 463

Query: 538 CGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDE 597
            G   +  TYN +ID        + A  +   M   G    ++TY  LI  L      ++
Sbjct: 464 SGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVED 523

Query: 598 ALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFS 657
           A  L+D + +EG   D   YN++L   C  G I     I++ M  N  +PD  T   + S
Sbjct: 524 AAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLIS 583

Query: 658 GYVNCGFHNSAMEALQVLSMR 678
           G    G    A + L+ + M+
Sbjct: 584 GLCKAGRVEVASKLLRSIQMK 604



 Score = 69.3 bits (168), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 82/376 (21%), Positives = 148/376 (39%), Gaps = 56/376 (14%)

Query: 319 MQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI----MQQNNLKPQDSTIATLSVECS 374
           +   GL+P +H Y+  +  +V      N +++++I    M    +KP  ST   L     
Sbjct: 145 IDEFGLKPDTHFYNRMLNLLVDG----NSLKLVEISHAKMSVWGIKPDVSTFNVLIKALC 200

Query: 375 KALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYEL 434
           +A +L  A  +L+                     D P             L PD +T+  
Sbjct: 201 RAHQLRPAILMLE---------------------DMPSYG----------LVPDEKTFTT 229

Query: 435 LFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIR 494
           +   +       EEG++    D A RI      M       S++S+  ++     EG + 
Sbjct: 230 VMQGY------IEEGDL----DGALRIRE---QMVEFGCSWSNVSVNVIVHGFCKEGRVE 276

Query: 495 ELIQYFCDSKTPLG----TPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIM 550
           + + +  +     G      T+NT+++ L +A     A+EI   M   G  P+  TYN +
Sbjct: 277 DALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSV 336

Query: 551 IDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGI 610
           I     +   K A  ++  M+     P T+TY  LI  L      +EA  L  +++ +GI
Sbjct: 337 ISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGI 396

Query: 611 PHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAME 670
             DV  +N++++  C      V   + E+M     +PD  T + +     + G  + A+ 
Sbjct: 397 LPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALN 456

Query: 671 ALQVLSMRMLCEEVST 686
            L+ + +      V T
Sbjct: 457 MLKQMELSGCARSVIT 472


>gi|168007580|ref|XP_001756486.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162692525|gb|EDQ78882.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 528

 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 87/363 (23%), Positives = 152/363 (41%), Gaps = 20/363 (5%)

Query: 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
           R++++ +I   GR+     A ++  +M+  G +P  +TY   + A+     ++       
Sbjct: 100 RFAYNVLIRYFGRSGQLDSAMEMFREMKIKGSEPDEYTYGFLVNALGKAGRVQEARSFFD 159

Query: 353 IMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR-CTNPK--PFSAFLAACDTMD 409
            M +  L P   T   L     K  +LD+A  L  ++ R    P    ++  L A  +  
Sbjct: 160 AMLERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAG 219

Query: 410 KPERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
           +   A K+F KM      PD  TY  L +  G      E   +F +             M
Sbjct: 220 RVGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFRE-------------M 266

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQES 525
               +    ++  +LL  L   G +  + +   +       P   ++NT++ +L +A + 
Sbjct: 267 VDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDALGKANKP 326

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
             A E+F +M   G  P+  +YNI+ID  +       A  ++  MV  GF P+T TY +L
Sbjct: 327 DAAREVFARMVESGCKPDLISYNILIDSYARFGDAAQARQMLEEMVEAGFIPETKTYNSL 386

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           I  L   G  DEA  +L+ +   G   DV+ YN ++    ++G       + +QM    V
Sbjct: 387 IHWLATDGQVDEAFAVLEEMETAGCRPDVVTYNRLMDMLGKRGENQRAARLFQQMKDKGV 446

Query: 646 QPD 648
           +PD
Sbjct: 447 EPD 449



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 81/347 (23%), Positives = 141/347 (40%), Gaps = 29/347 (8%)

Query: 311 LAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLS 370
           +A  L  +M+  G QPS  TY+  + A+ S   +    ++   M  +   P   T +TL 
Sbjct: 188 MALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLV 247

Query: 371 VECSKALELDLAEALL-DQISR-----CTNPKPFSAFLAACDTMDKPERAIKIFAKM-RQ 423
               K+  ++ A  +  + + R       N     A LA    MD   R  K+  +M R+
Sbjct: 248 NGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMD---RVWKLMKEMSRK 304

Query: 424 KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNL 483
              PD  ++  +    G  N P          D+A+ + A    M  +  +   IS   L
Sbjct: 305 GFHPDAFSFNTIMDALGKANKP----------DAAREVFA---RMVESGCKPDLISYNIL 351

Query: 484 LKA---LGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGI 540
           + +    G     R++++   ++     T TYN+++H L    +   A  + ++M+T G 
Sbjct: 352 IDSYARFGDAAQARQMLEEMVEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEEMETAGC 411

Query: 541 PPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALN 600
            P+  TYN ++D        + A+ L   M   G  P T++Y   I  L      DEAL 
Sbjct: 412 RPDVVTYNRLMDMLGKRGENQRAARLFQQMKDKGVEPDTLSYAVRIDGLAFDDRLDEALV 471

Query: 601 LLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
           L   +   G P D  +Y  +++ A   G     E   +  H+++  P
Sbjct: 472 LFKDMKAVGCPVDKAMYRILIRAAHRAGD---TELEAQLKHESQFMP 515



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 63/266 (23%), Positives = 108/266 (40%), Gaps = 20/266 (7%)

Query: 402 LAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI 461
           LA+   +D  E  +K      + LRP+  T   L + +G  N   +  ++F+Q +S    
Sbjct: 5   LASWGILDPLETLLKEMVAEGRPLRPN--TLVKLITAYGRGNKSGDAFDLFNQAES---- 58

Query: 462 NAIEMDMARNNIQHSHISMKNLLKALG----AEGMIRELIQYFCDSKTPLGTPTYNTVLH 517
                  A +   H+   + ++L   G    AE + ++L+Q  C     L    YN ++ 
Sbjct: 59  ------FACSPTVHAFTKLIDILVNSGEFERAELVYKKLVQKGCQ----LDRFAYNVLIR 108

Query: 518 SLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYP 577
               + +   AME+F++MK  G  P+  TY  +++        + A +    M+  G  P
Sbjct: 109 YFGRSGQLDSAMEMFREMKIKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAMLERGLTP 168

Query: 578 QTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFII 637
              TY  L+      G  D AL L   +   G    V+ YN +L   C  GR+     + 
Sbjct: 169 NIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLF 228

Query: 638 EQMHQNKVQPDPSTCHFVFSGYVNCG 663
            +M  +   PD  T   + +G    G
Sbjct: 229 HKMTGDGCSPDSYTYSTLVNGLGKSG 254



 Score = 74.3 bits (181), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 81/360 (22%), Positives = 143/360 (39%), Gaps = 20/360 (5%)

Query: 299 VIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNN 358
           +I A GR   SG A  L  Q +S    P+ H +   I  +V+         V K + Q  
Sbjct: 36  LITAYGRGNKSGDAFDLFNQAESFACSPTVHAFTKLIDILVNSGEFERAELVYKKLVQKG 95

Query: 359 LKPQDSTIATLSVECSKALELDLAEALLDQIS-RCTNPKPFS-AFLA-ACDTMDKPERAI 415
            +        L     ++ +LD A  +  ++  + + P  ++  FL  A     + + A 
Sbjct: 96  CQLDRFAYNVLIRYFGRSGQLDSAMEMFREMKIKGSEPDEYTYGFLVNALGKAGRVQEAR 155

Query: 416 KIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQ 474
             F  M ++ L P+I TY LL   F  V           Q+D A  + A   +M R   Q
Sbjct: 156 SFFDAMLERGLTPNIPTYNLLMDAFRKV----------GQLDMALGLFA---EMKRRGFQ 202

Query: 475 HSHISMKNLLKAL---GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEI 531
            S ++   LL AL   G  G  R+L            + TY+T+++ L ++     A ++
Sbjct: 203 PSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKV 262

Query: 532 FKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLD 591
           F++M   G+  +   YN ++   +          L+  M R GF+P   ++  ++  L  
Sbjct: 263 FREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDALGK 322

Query: 592 YGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
               D A  +   +   G   D++ YN ++      G       ++E+M +    P+  T
Sbjct: 323 ANKPDAAREVFARMVESGCKPDLISYNILIDSYARFGDAAQARQMLEEMVEAGFIPETKT 382



 Score = 69.3 bits (168), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 69/304 (22%), Positives = 122/304 (40%), Gaps = 23/304 (7%)

Query: 298 DVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQN 357
           D + + GR    G A +L  +M   G  P S+TY   +  +     +    +V + M   
Sbjct: 213 DALCSAGRV---GAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDR 269

Query: 358 NLKPQDSTIATLSVECSKALELDLAEALLDQISRCT-NPKPFS--AFLAACDTMDKPERA 414
            +        +L    +KA  +D    L+ ++SR   +P  FS    + A    +KP+ A
Sbjct: 270 GVAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAA 329

Query: 415 IKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNI 473
            ++FA+M +   +PD+ +Y +L   +       +   M  ++  A  I   +        
Sbjct: 330 REVFARMVESGCKPDLISYNILIDSYARFGDAAQARQMLEEMVEAGFIPETK-------- 381

Query: 474 QHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAME 530
                +  +L+  L  +G + E      + +T    P   TYN ++  L +  E+ RA  
Sbjct: 382 -----TYNSLIHWLATDGQVDEAFAVLEEMETAGCRPDVVTYNRLMDMLGKRGENQRAAR 436

Query: 531 IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590
           +F+QMK  G+ P+  +Y + ID  +       A  L   M   G       Y  LI+   
Sbjct: 437 LFQQMKDKGVEPDTLSYAVRIDGLAFDDRLDEALVLFKDMKAVGCPVDKAMYRILIRAAH 496

Query: 591 DYGD 594
             GD
Sbjct: 497 RAGD 500


>gi|413922833|gb|AFW62765.1| hypothetical protein ZEAMMB73_408366 [Zea mays]
          Length = 820

 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 81/355 (22%), Positives = 150/355 (42%), Gaps = 33/355 (9%)

Query: 326 PSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEAL 385
           P+  TY+  IRA+     LR+    L +M ++  +P   T  +L +   +  +L++A  L
Sbjct: 127 PTGATYNALIRALCRRADLRHAQRYLSLMVRSGWRPDAFTFNSLILGYCRTQQLEVAHDL 186

Query: 386 LDQI---SRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNV 442
             ++       +   ++A +       + + A+++F +M Q   PD+ T+  L     + 
Sbjct: 187 FCKMPFRGFSQDAVSYAALIEGFCEAGRIDEALELFREMTQ---PDMYTHAALVKGLCDA 243

Query: 443 NAPYEEG-----------------------NMFSQVDSAKRINAIEMDMARNNIQHSHIS 479
               EEG                       +++ +   A+    I  +M  + +    ++
Sbjct: 244 GRG-EEGLCMLQKMKELGWRPTTRAYAALVDLWCREQKAEEAEKILNEMFDSGLMPCVVT 302

Query: 480 MKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMK 536
              ++ A   EG +   ++ F   +     P   TYN ++     A + ++AM +  QM+
Sbjct: 303 CTIVVNAYCREGRMSGAVRVFESMRFKGCEPNVWTYNAIVQGFCNAGKVYKAMALLDQMR 362

Query: 537 TCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFD 596
            CG+ P+  TYN++I    I     SA  L+ +M  +G      TY  LI  L   G  D
Sbjct: 363 ECGVEPDVVTYNLLIRGQCIDGHIGSAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVD 422

Query: 597 EALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
           EA +L D +   GI  + + +NT++   C+ G+ DV    +E M      PD  T
Sbjct: 423 EACSLFDGLEYRGIRPNSVTFNTVINGLCKAGKFDVACTFLENMISAGYAPDTYT 477



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 109/535 (20%), Positives = 201/535 (37%), Gaps = 74/535 (13%)

Query: 156 PILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEI 215
           P    YN+ + A  +   + HA   L LM       +  T+  L+      + L   H++
Sbjct: 127 PTGATYNALIRALCRRADLRHAQRYLSLMVRSGWRPDAFTFNSLILGYCRTQQLEVAHDL 186

Query: 216 W-EDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMV-------ALAMMGKLYINRT 267
           + +   + +S    S    +  F     +  A E  + M        A  + G     R 
Sbjct: 187 FCKMPFRGFSQDAVSYAALIEGFCEAGRIDEALELFREMTQPDMYTHAALVKGLCDAGRG 246

Query: 268 SEGRLRSSRLDIPIPLNALPVMKVLRW-----SFSDVIHACGRTQNSGLAEQLMLQMQSL 322
            EG            L  L  MK L W     +++ ++    R Q +  AE+++ +M   
Sbjct: 247 EEG------------LCMLQKMKELGWRPTTRAYAALVDLWCREQKAEEAEKILNEMFDS 294

Query: 323 GLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLA 382
           GL P   T    + A   +  +   + V + M+    +P   T   +      A ++  A
Sbjct: 295 GLMPCVVTCTIVVNAYCREGRMSGAVRVFESMRFKGCEPNVWTYNAIVQGFCNAGKVYKA 354

Query: 383 EALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNV 442
            ALLDQ+  C                                + PD+ TY LL      +
Sbjct: 355 MALLDQMREC-------------------------------GVEPDVVTYNLL------I 377

Query: 443 NAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCD 502
                +G+    + SA R+  +   M  N +     +   L+ AL   G + E    F D
Sbjct: 378 RGQCIDGH----IGSAFRLLRL---MEGNGLAADQYTYNVLIDALCKTGKVDEACSLF-D 429

Query: 503 SKTPLG----TPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIR 558
                G    + T+NTV++ L +A +   A    + M + G  P+  TY+  I+     +
Sbjct: 430 GLEYRGIRPNSVTFNTVINGLCKAGKFDVACTFLENMISAGYAPDTYTYSPFIENLCKTK 489

Query: 559 CFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYN 618
             +     +  M++    P T+ YT +I  L +  ++  A  +   +  +G   DV+ Y 
Sbjct: 490 GSQEGLFFIDEMLQKDVKPSTVNYTIVINRLFNERNYGLATRIWGQMVSQGCSPDVVTYT 549

Query: 619 TILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           T ++  C +GR+D  E ++ +M + +   D    + +  G+ + G  + A+  L+
Sbjct: 550 TSVRAYCNEGRLDEAENVVTEMKKCRTIVDAMAYNTLIDGHTSIGQTDRAVTILK 604



 Score = 70.9 bits (172), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 83/402 (20%), Positives = 143/402 (35%), Gaps = 80/402 (19%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +F+ VI+   +     +A   +  M S G  P ++TY  FI  +   +G + G+  +  M
Sbjct: 442 TFNTVINGLCKAGKFDVACTFLENMISAGYAPDTYTYSPFIENLCKTKGSQEGLFFIDEM 501

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERA 414
            Q ++KP  ST+    V                 I+R  N + +               A
Sbjct: 502 LQKDVKP--STVNYTIV-----------------INRLFNERNYGL-------------A 529

Query: 415 IKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNI 473
            +I+ +M  Q   PD+ TY      + N     E  N+ +++   K+   I   MA N +
Sbjct: 530 TRIWGQMVSQGCSPDVVTYTTSVRAYCNEGRLDEAENVVTEM---KKCRTIVDAMAYNTL 586

Query: 474 QHSHISMKNLLKAL-------GAEGM---------------------------------- 492
              H S+    +A+       G   M                                  
Sbjct: 587 IDGHTSIGQTDRAVTILKHMTGVASMPNHFTFFILLRHLLQRRLAEHVPLKATSVWKTIE 646

Query: 493 ---IRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNI 549
              + EL +    +  P    TY ++L    E +       +   MK   +P N   YN 
Sbjct: 647 LADVFELFELMKKNSVPSSARTYLSILEGFSEERRLDEVTSLVSLMKEENLPLNEDIYNA 706

Query: 550 MIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEG 609
           +++C   +R +  A AL+  M+  GF P  + Y  L+  L   G  D A  +      + 
Sbjct: 707 LVNCFCKLRMYSDAWALLCSMIGHGFLPNLIFYQYLLSGLTAEGQADRAKEIFRSSRWKE 766

Query: 610 IPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
              D +++  I+     KG  D+   +I  + Q K +P   T
Sbjct: 767 YNTDEIVWKVIIDGFIRKGHADMCHDMISMLEQMKCKPSDET 808



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/208 (20%), Positives = 87/208 (41%), Gaps = 1/208 (0%)

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHR 527
           M         +S   L++     G I E ++ F +   P    T+  ++  L +A     
Sbjct: 190 MPFRGFSQDAVSYAALIEGFCEAGRIDEALELFREMTQP-DMYTHAALVKGLCDAGRGEE 248

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
            + + ++MK  G  P    Y  ++D     +  + A  +++ M   G  P  +T T ++ 
Sbjct: 249 GLCMLQKMKELGWRPTTRAYAALVDLWCREQKAEEAEKILNEMFDSGLMPCVVTCTIVVN 308

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
                G    A+ + + +  +G   +V  YN I++  C  G++     +++QM +  V+P
Sbjct: 309 AYCREGRMSGAVRVFESMRFKGCEPNVWTYNAIVQGFCNAGKVYKAMALLDQMRECGVEP 368

Query: 648 DPSTCHFVFSGYVNCGFHNSAMEALQVL 675
           D  T + +  G    G   SA   L+++
Sbjct: 369 DVVTYNLLIRGQCIDGHIGSAFRLLRLM 396


>gi|302806665|ref|XP_002985064.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
 gi|300147274|gb|EFJ13939.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
          Length = 1636

 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 112/523 (21%), Positives = 220/523 (42%), Gaps = 49/523 (9%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y  M+  L K   L++A  L+  + +  G  P +  YN+ L    K + + +A   L+ M
Sbjct: 233 YNTMINGLSKSDRLDDAIRLLEEMVDN-GFAPNVFSYNTVLHGFCKANRVENALWLLEQM 291

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH-YSLSIFSLRKFVWSFTRLRDL 243
            +R    + V+YT ++        +     + +  I+     ++ +    V  F R+ DL
Sbjct: 292 VTRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDL 351

Query: 244 KSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHAC 303
             A E ++ M                   R  R     P NA+        ++++++H  
Sbjct: 352 DGAVELVRKMTE-----------------RGYR-----P-NAI--------TYNNIMHVF 380

Query: 304 GRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQD 363
            R  +   A Q++  M   G  P +  Y   I        LR   ++L+ M +   +P  
Sbjct: 381 CRRNDMERAHQVLQMMIQTGCPPDAINYSTIISGFCKAGKLREAHDLLEQMIRRGCRPDV 440

Query: 364 STIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFL-AACDTMDKPERAIKIF 418
           + ++TL     KA  +D A+ LL ++S   +  P    +S  + A C     PE    + 
Sbjct: 441 ACLSTLIDALCKAAAIDSAQELL-RMSIGMDCAPDVVAYSILIHALCKAKRLPEAESWLD 499

Query: 419 AKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHI 478
             ++ +  PD+ TY    S+   +       + F   D  +    +   +  + + HS  
Sbjct: 500 VMVKNRCYPDVVTYN---SVVDGLCKSRRINDAFLLFDRMRAAGVMPDVVTYSIVIHSFC 556

Query: 479 SMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTC 538
              NL  A        ++++   ++K      TY+ +++ L +A    +A ++F++M  C
Sbjct: 557 KDNNLDSAF-------KMLERMKEAKCVPDVVTYSALINGLCKAGTVDKAFDVFQEMLGC 609

Query: 539 GIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEA 598
           G  PN  TYN +ID    I   + A+ ++ +M +    P ++TYT LI  L +    +EA
Sbjct: 610 GCAPNLVTYNTLIDGLCKINKVEQAAEMLEIMRKQSCTPDSITYTCLINGLCNASRLEEA 669

Query: 599 LNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMH 641
             +L  +  +G   D + Y T+L+   +   ++++E ++++M 
Sbjct: 670 WRVLREMKDKGCLPDRMTYGTLLRALQKTNNLELVEQLLKEME 712



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/191 (30%), Positives = 96/191 (50%), Gaps = 5/191 (2%)

Query: 488  GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCG-IPPNAAT 546
            G  G   EL++       P     +N V+  L  A++   A+E+FK+M+  G  PP+  T
Sbjct: 891  GDIGTAYELLKEMPRHGVPQNVILHNVVIKGLCSARKLDSALELFKEMEESGSCPPDVFT 950

Query: 547  YNIMIDCCSIIRCFK--SASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDL 604
            Y+ ++D  S+++  K   A  LV  MV  G  P  +TY++L+  L   G  DEA  LL  
Sbjct: 951  YSTIVD--SLVKSGKVDDACRLVEDMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQR 1008

Query: 605  VSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGF 664
            ++  G   +++ YNTI+   C+ GRID    ++E+M     QP+  T   +   +  CG 
Sbjct: 1009 MTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGK 1068

Query: 665  HNSAMEALQVL 675
               A+  ++V+
Sbjct: 1069 AEDAIGLVEVM 1079



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 94/415 (22%), Positives = 184/415 (44%), Gaps = 38/415 (9%)

Query: 295  SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
            ++S ++H   +      A  L+ +M   G  P+  TY+  I        +     +L+ M
Sbjct: 985  TYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEM 1044

Query: 355  QQNNLKPQDSTIATL---SVECSKALE-LDLAEALLDQISRCTNPKPFSAFLAACDTMDK 410
                 +P   T   L     +C KA + + L E ++++     N   +++ L      D+
Sbjct: 1045 VDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEK-GYVPNLFTYNSLLDMFCKKDE 1103

Query: 411  PERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAI----- 464
             ERA ++ + M QK   P++ +Y  + +        +E   +  Q+ S   +  I     
Sbjct: 1104 VERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNT 1163

Query: 465  ---------EMDMAR---NNIQHSH-----ISMKNLLKAL-------GAEGMIRELIQYF 500
                      +D+A    N IQ S      ++  +L+  L        AE ++RE+ +  
Sbjct: 1164 IIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQ 1223

Query: 501  CDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCF 560
              S   +   TYNTV+  L +++   RA ++F QM + G+ P+  TY+I+I      R  
Sbjct: 1224 GCSPDII---TYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFM 1280

Query: 561  KSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTI 620
              A+ ++ +M+++GF P  +TY  LI      G+ D+AL +L L+  +G   DV+ ++  
Sbjct: 1281 DEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIF 1340

Query: 621  LKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
            +    ++GR+     ++E M +  + PD  T + +  G+ +      A++  +V+
Sbjct: 1341 IDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASLTEDAVDLFEVM 1395



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 116/546 (21%), Positives = 215/546 (39%), Gaps = 45/546 (8%)

Query: 224  SLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYI-NRTSEGRLRSSRLDIPIP 282
            S ++F+    +    R  D+ +AYE L+ M    +   + + N   +G   + +LD    
Sbjct: 874  SPNMFTFTILIHGLCRAGDIGTAYELLKEMPRHGVPQNVILHNVVIKGLCSARKLD---- 929

Query: 283  LNALPVMKVLR---------WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDG 333
             +AL + K +          +++S ++ +  ++     A +L+  M S G  P+  TY  
Sbjct: 930  -SALELFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEDMVSKGCSPNVVTYSS 988

Query: 334  FIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI--SR 391
             +  +     L     +L+ M ++   P   T  T+     K   +D A  LL+++    
Sbjct: 989  LLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGG 1048

Query: 392  CT-NPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLF---------- 439
            C  N   ++  L A     K E AI +   M +K   P++ TY  L  +F          
Sbjct: 1049 CQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERAC 1108

Query: 440  ---------GNVNAPYEEGNMFSQVDSAKRINAIEM---DMARNNIQHSHISMKNLLKAL 487
                     G V        + + +  A +++   +    M  NN     ++   ++ A+
Sbjct: 1109 QLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAM 1168

Query: 488  GAE---GMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQM-KTCGIPPN 543
                   +  EL     +S       TYN+++H L +++   +A  + ++M +  G  P+
Sbjct: 1169 CKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPD 1228

Query: 544  AATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLD 603
              TYN +ID     +    A  L   M+ DG  P  +TY+ +I  L  +   DEA N+L+
Sbjct: 1229 IITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLE 1288

Query: 604  LVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
            L+   G     + Y T++   C+ G +D    I++ +      PD  T           G
Sbjct: 1289 LMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRG 1348

Query: 664  FHNSAMEALQVLSMRMLCEEVSTLEEKRSDFEDLILAEDSEAESRILQFCEDSNENLAFT 723
                A E L+ +    L  +  T       F D  L ED+     +++ C    +N  +T
Sbjct: 1349 RLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASLTEDAVDLFEVMRQCGCEPDNATYT 1408

Query: 724  AALLQL 729
              +  L
Sbjct: 1409 TLVGHL 1414



 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 82/355 (23%), Positives = 150/355 (42%), Gaps = 20/355 (5%)

Query: 326 PSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEAL 385
           P S TY+  I  +     L + + +L+ M  N   P   +  T+     KA  ++ A  L
Sbjct: 228 PDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWL 287

Query: 386 LDQ-ISRCTNPK--PFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELL---FSL 438
           L+Q ++R   P    ++  +     +D+ + A ++  KM Q+  +P++ TY  L   F  
Sbjct: 288 LEQMVTRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCR 347

Query: 439 FGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQ 498
            G+++   E   +    +   R NAI      NNI H      ++ +A        +++Q
Sbjct: 348 VGDLDGAVEL--VRKMTERGYRPNAI----TYNNIMHVFCRRNDMERA-------HQVLQ 394

Query: 499 YFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIR 558
               +  P     Y+T++    +A +   A ++ +QM   G  P+ A  + +ID      
Sbjct: 395 MMIQTGCPPDAINYSTIISGFCKAGKLREAHDLLEQMIRRGCRPDVACLSTLIDALCKAA 454

Query: 559 CFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYN 618
              SA  L+ M +     P  + Y+ LI  L       EA + LD++       DV+ YN
Sbjct: 455 AIDSAQELLRMSIGMDCAPDVVAYSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYN 514

Query: 619 TILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           +++   C+  RI+    + ++M    V PD  T   V   +      +SA + L+
Sbjct: 515 SVVDGLCKSRRINDAFLLFDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLE 569



 Score = 82.4 bits (202), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 89/380 (23%), Positives = 165/380 (43%), Gaps = 32/380 (8%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTY----DGFIRAIVSDRGLRNGMEV 350
           S++ VI+   +      A ++M +M   G QP+  TY    DGF R  V D  L   +E+
Sbjct: 302 SYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCR--VGD--LDGAVEL 357

Query: 351 LKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP---FSAFLAACDT 407
           ++ M +   +P   T   +     +  +++ A  +L  + +   P     +S  ++    
Sbjct: 358 VRKMTERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINYSTIISGFCK 417

Query: 408 MDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI--NAI 464
             K   A  +  +M R+  RPD+     L        A          +DSA+ +   +I
Sbjct: 418 AGKLREAHDLLEQMIRRGCRPDVACLSTLIDALCKAAA----------IDSAQELLRMSI 467

Query: 465 EMDMARNNIQHSHISMKNLLKAL---GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVE 521
            MD A + + +S I +  L KA     AE  +  +++  C         TYN+V+  L +
Sbjct: 468 GMDCAPDVVAYS-ILIHALCKAKRLPEAESWLDVMVKNRCYPDVV----TYNSVVDGLCK 522

Query: 522 AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMT 581
           ++  + A  +F +M+  G+ P+  TY+I+I          SA  ++  M      P  +T
Sbjct: 523 SRRINDAFLLFDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVT 582

Query: 582 YTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMH 641
           Y+ALI  L   G  D+A ++   +   G   +++ YNT++   C+  +++    ++E M 
Sbjct: 583 YSALINGLCKAGTVDKAFDVFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQAAEMLEIMR 642

Query: 642 QNKVQPDPSTCHFVFSGYVN 661
           +    PD  T   + +G  N
Sbjct: 643 KQSCTPDSITYTCLINGLCN 662



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 81/177 (45%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           +YNTVLH   +A     A+ + +QM T G PP+  +Y  +I+    +     A  ++  M
Sbjct: 267 SYNTVLHGFCKANRVENALWLLEQMVTRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKM 326

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           ++ G  P  +TY  L+      GD D A+ L+  ++  G   + + YN I+   C +  +
Sbjct: 327 IQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHVFCRRNDM 386

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTL 687
           +    +++ M Q    PD      + SG+   G    A + L+ +  R    +V+ L
Sbjct: 387 ERAHQVLQMMIQTGCPPDAINYSTIISGFCKAGKLREAHDLLEQMIRRGCRPDVACL 443



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 127/596 (21%), Positives = 231/596 (38%), Gaps = 95/596 (15%)

Query: 113  MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
            M  K    N   Y  ++  LCK G L+EA+ L+  +  R G  P +  YN+ +    KL 
Sbjct: 974  MVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRM-TRSGCSPNIVTYNTIIDGHCKLG 1032

Query: 173  SMVHANLCLDLMDSRMVGKNEVTYTELL----KLAVWQKNLSAVHEIWEDYIKHYSLSIF 228
             +  A   L+ M       N VTYT LL    K    +  +  V  + E   K Y  ++F
Sbjct: 1033 RIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVE---KGYVPNLF 1089

Query: 229  SLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLY-INRTSEGRLRSSRLDIPIPL---- 283
            +    +  F +  +++ A + L  M+    +  +   N    G  +++++   + L    
Sbjct: 1090 TYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQM 1149

Query: 284  ---NALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVS 340
               N +P +     +F+ +I A  +T    +A +L   +Q  G  P+  TY+  +  +  
Sbjct: 1150 LSNNCVPDIV----TFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCK 1205

Query: 341  DRGLRNGMEVLKIM-QQNNLKPQDSTIATLSVECSKALELDLAEAL-LDQISRCTNPKPF 398
             R       +L+ M ++    P   T  T+     K+  +D A  L L  +S    P   
Sbjct: 1206 SRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDV 1265

Query: 399  S-----AFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLF---GNVNAPYEEGN 450
            +     + L     MD+    +++   ++    P   TY  L   F   GN++   E   
Sbjct: 1266 TYSIVISSLCKWRFMDEANNVLELM--LKNGFDPGAITYGTLIDGFCKTGNLDKALEILQ 1323

Query: 451  MFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP 510
            +     S         D+   +I    +S +  L+  G      EL++    +     T 
Sbjct: 1324 LLLSKGSYP-------DVVTFSIFIDWLSKRGRLRQAG------ELLETMLRAGLVPDTV 1370

Query: 511  TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSM- 569
            TYNT+L    +A  +  A+++F+ M+ CG  P+ ATY  ++      + +K   A VS  
Sbjct: 1371 TYNTLLKGFCDASLTEDAVDLFEVMRQCGCEPDNATYTTLVGHLVDKKSYKDLLAEVSKS 1430

Query: 570  MVRDGF----------------------------------YPQ-------------TMTY 582
            MV  GF                                   PQ              + +
Sbjct: 1431 MVDTGFKLNHELSSKLEASIEVEADVRLGCAIVDMFGKCGSPQDARKVFEGMDQRNVVLW 1490

Query: 583  TALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID--VIEFI 636
            +A++ + + +   ++A  L  ++ LEG+  D + + ++L   C  G +D  V EF+
Sbjct: 1491 SAMLGVYVFHKQEEQAFGLWRVMGLEGVEPDAVTFLSLLTMCCHAGLLDAAVDEFV 1546



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 59/271 (21%), Positives = 106/271 (39%), Gaps = 17/271 (6%)

Query: 414 AIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNI 473
           A+  F +M +   PD  TY  +              N  S+ D       +  +M  N  
Sbjct: 215 AVLHFREMSKTCPPDSVTYNTMI-------------NGLSKSDRLDDAIRLLEEMVDNGF 261

Query: 474 QHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAME 530
             +  S   +L        +     L++       P    +Y TV++ L +  +   A  
Sbjct: 262 APNVFSYNTVLHGFCKANRVENALWLLEQMVTRGCPPDVVSYTTVINGLCKLDQVDEACR 321

Query: 531 IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590
           +  +M   G  PN  TY  ++D    +     A  LV  M   G+ P  +TY  ++ +  
Sbjct: 322 VMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHVFC 381

Query: 591 DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650
              D + A  +L ++   G P D + Y+TI+   C+ G++     ++EQM +   +PD +
Sbjct: 382 RRNDMERAHQVLQMMIQTGCPPDAINYSTIISGFCKAGKLREAHDLLEQMIRRGCRPDVA 441

Query: 651 TCHFVFSGYVNCGFHNSAMEALQVLSMRMLC 681
               +          +SA E L+ +S+ M C
Sbjct: 442 CLSTLIDALCKAAAIDSAQELLR-MSIGMDC 471



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 111/533 (20%), Positives = 197/533 (36%), Gaps = 40/533 (7%)

Query: 162 NSFLGACAKLHSMVHANLCLDLMDSRMVGK---NEVTYTELLKLAVWQKNLSAVHEIWED 218
           N  L    K H    A+   DL  SR+ G+   + VTY+ L+   +    +   +E++++
Sbjct: 130 NCLLNVLVKAHQYSQAH---DLFRSRIEGQWGGDTVTYSTLISGFIRAGKILPAYELFDE 186

Query: 219 YIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGK------LYINRTSEGRL 272
             +    +   + K +     LR L  A +    ++    M K      +  N    G  
Sbjct: 187 MNRKGLKAHAGVHKSI-----LRGLCDAGQCSDAVLHFREMSKTCPPDSVTYNTMINGLS 241

Query: 273 RSSRLDIPIPLNALPVMKVLR---WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSH 329
           +S RLD  I L    V        +S++ V+H   +      A  L+ QM + G  P   
Sbjct: 242 KSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVTRGCPPDVV 301

Query: 330 TYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI 389
           +Y   I  +     +     V+  M Q   +P   T  TL     +  +LD A  L+ ++
Sbjct: 302 SYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKM 361

Query: 390 S-RCTNPKP--FSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAP 445
           + R   P    ++  +      +  ERA ++   M Q    PD   Y  + S F      
Sbjct: 362 TERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINYSTIISGFCKAGKL 421

Query: 446 YEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMI---RELIQYFCD 502
            E  ++  Q             M R   +     +  L+ AL     I   +EL++    
Sbjct: 422 REAHDLLEQ-------------MIRRGCRPDVACLSTLIDALCKAAAIDSAQELLRMSIG 468

Query: 503 SKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKS 562
                    Y+ ++H+L +A+    A      M      P+  TYN ++D     R    
Sbjct: 469 MDCAPDVVAYSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSRRIND 528

Query: 563 ASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILK 622
           A  L   M   G  P  +TY+ +I       + D A  +L+ +       DV+ Y+ ++ 
Sbjct: 529 AFLLFDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSALIN 588

Query: 623 KACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
             C+ G +D    + ++M      P+  T + +  G         A E L+++
Sbjct: 589 GLCKAGTVDKAFDVFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQAAEMLEIM 641



 Score = 47.4 bits (111), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 91/504 (18%), Positives = 193/504 (38%), Gaps = 74/504 (14%)

Query: 108  ETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGA 167
            E + +++E     N   Y  ++  LCK    ++A  L+  +  + G  P +  YN+ +  
Sbjct: 1179 ELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDG 1238

Query: 168  CAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH-YSLS 226
              K   +  A      M S  +  ++VTY+ ++      + +   + + E  +K+ +   
Sbjct: 1239 LCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPG 1298

Query: 227  IFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNAL 286
              +    +  F +  +L  A E LQ +++                 + S  D+       
Sbjct: 1299 AITYGTLIDGFCKTGNLDKALEILQLLLS-----------------KGSYPDV------- 1334

Query: 287  PVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRN 346
                V    F D +   GR + +G   +L+  M   GL P + TY+  ++         +
Sbjct: 1335 ----VTFSIFIDWLSKRGRLRQAG---ELLETMLRAGLVPDTVTYNTLLKGFCDASLTED 1387

Query: 347  GMEVLKIMQQNNLKPQDSTIATL-----SVECSKALELDLAEALLDQISRCTNPKPFSAF 401
             +++ ++M+Q   +P ++T  TL       +  K L  +++++++D           + F
Sbjct: 1388 AVDLFEVMRQCGCEPDNATYTTLVGHLVDKKSYKDLLAEVSKSMVD-----------TGF 1436

Query: 402  LAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI 461
                +   K E +I++ A        D+R    +  +FG   +P +   +F  +D  +R 
Sbjct: 1437 KLNHELSSKLEASIEVEA--------DVRLGCAIVDMFGKCGSPQDARKVFEGMD--QRN 1486

Query: 462  NAIEMDMARNNIQHSHISMK-NLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLV 520
              +   M    + H        L + +G EG+  + + +     + L    +  +L + V
Sbjct: 1487 VVLWSAMLGVYVFHKQEEQAFGLWRVMGLEGVEPDAVTFL----SLLTMCCHAGLLDAAV 1542

Query: 521  EAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTM 580
            +        E     +  G+ P    ++ +ID    +     A  L+  M      P   
Sbjct: 1543 D--------EFVSISRDYGLEPGVDHFSCVIDLLGRLGLVNEAEDLMLGM---PCKPSAA 1591

Query: 581  TYTALIKILLDYGDFDEALNLLDL 604
            T+  L+      GDF+ AL + +L
Sbjct: 1592 TWNCLLSAYKICGDFERALRVAEL 1615


>gi|222630937|gb|EEE63069.1| hypothetical protein OsJ_17877 [Oryza sativa Japonica Group]
          Length = 702

 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 66/260 (25%), Positives = 119/260 (45%), Gaps = 16/260 (6%)

Query: 396 KPFSAFLAACDTMDKPERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQ 454
           + ++  L A     + ERA+++FA++R Q + P I TY ++  ++G +            
Sbjct: 90  RAYTTVLHALSRAGRYERALQLFAELRRQGVVPTIVTYNVVLDVYGRMG----------- 138

Query: 455 VDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---T 511
             S  RI A+  +M    ++    +   ++ A G +G++ + + +F D K     P   T
Sbjct: 139 -RSWPRIVALLEEMRAAGVEPDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVT 197

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           YN +L    +A     A+ + K+M+  G  P+A TYN +    +    F+ A+  +  M 
Sbjct: 198 YNALLQVFGKAGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMT 257

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
             G  P T TY  ++    + G  DEAL L D +   G   +V  YN I     +K R  
Sbjct: 258 SKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFT 317

Query: 632 VIEFIIEQMHQNKVQPDPST 651
            +  ++E+M ++   P+  T
Sbjct: 318 AMLEMLEEMSRSGCTPNRVT 337



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 83/405 (20%), Positives = 174/405 (42%), Gaps = 30/405 (7%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSL---GLQPSSHTYDGFIRAIVSDRGLRNGMEV 350
           ++ S VI ACGR    GL +Q +   + L   G  P   TY+  ++           + V
Sbjct: 161 FTASTVIAACGR---DGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFGKAGNYTEALRV 217

Query: 351 LKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI-SRCTNPKPFS--AFLAACDT 407
           LK M+ +  +P   T   L+   ++A   + A   LD + S+   P  F+    + A   
Sbjct: 218 LKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYAN 277

Query: 408 MDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM 466
           + + + A+ +F +M++    P++ TY L+F + G                 ++    +EM
Sbjct: 278 VGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGK---------------KSRFTAMLEM 322

Query: 467 --DMARNNIQHSHISMKNLLKALGAEGM---IRELIQYFCDSKTPLGTPTYNTVLHSLVE 521
             +M+R+    + ++   +L   G  GM   +  ++         L   TYNT++ +   
Sbjct: 323 LEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGR 382

Query: 522 AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMT 581
                 A +++ +M + G  P   TYN +++  S    + +A ++VS M+++GF P   +
Sbjct: 383 CGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQS 442

Query: 582 YTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMH 641
           Y+ L++     G+     ++   V +  I    ++  T++    +  R++ +E   +++ 
Sbjct: 443 YSLLLQCYAKGGNAAGIESIEKEVYVGTIFPSWVILRTLVIANFKCRRLEGVEKAFQEVK 502

Query: 642 QNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
               +PD    + + + Y   G ++ A E    +    L  ++ T
Sbjct: 503 AQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPDLIT 547



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 95/207 (45%), Gaps = 5/207 (2%)

Query: 479 SMKNLLKALGAEGMIRELIQYFCDSKTPLGTP----TYNTVLHSLVEAQESHRAMEIFKQ 534
           +++ +++ALG EG    +     +   P G+      Y TVLH+L  A    RA+++F +
Sbjct: 55  ALEMVVRALGREGQHDVVCDLLDEMPLPPGSRLDVRAYTTVLHALSRAGRYERALQLFAE 114

Query: 535 MKTCGIPPNAATYNIMIDCCS-IIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYG 593
           ++  G+ P   TYN+++D    + R +    AL+  M   G  P   T + +I      G
Sbjct: 115 LRRQGVVPTIVTYNVVLDVYGRMGRSWPRIVALLEEMRAAGVEPDDFTASTVIAACGRDG 174

Query: 594 DFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCH 653
             D+A+   + +   G    V+ YN +L+   + G       ++++M  +  QPD  T +
Sbjct: 175 LLDQAVAFFEDLKARGHVPCVVTYNALLQVFGKAGNYTEALRVLKEMEDSGCQPDAVTYN 234

Query: 654 FVFSGYVNCGFHNSAMEALQVLSMRML 680
            +   Y   GF   A + L  ++ + L
Sbjct: 235 ELAGTYARAGFFEEAAKCLDTMTSKGL 261



 Score = 70.1 bits (170), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 116/579 (20%), Positives = 221/579 (38%), Gaps = 47/579 (8%)

Query: 120 LNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKL-HSMVHAN 178
           L+ + Y  ++ AL + G  E A  L   L  R G+ P +  YN  L    ++  S     
Sbjct: 87  LDVRAYTTVLHALSRAGRYERALQLFAEL-RRQGVVPTIVTYNVVLDVYGRMGRSWPRIV 145

Query: 179 LCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDY-IKHYSLSIFSLRKFVWSF 237
             L+ M +  V  ++ T + ++        L      +ED   + +   + +    +  F
Sbjct: 146 ALLEEMRAAGVEPDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQVF 205

Query: 238 TRLRDLKSAYETLQHM---------VALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPV 288
            +  +   A   L+ M         V    +   Y  R       +  LD       LP 
Sbjct: 206 GKAGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYA-RAGFFEEAAKCLDTMTSKGLLPN 264

Query: 289 MKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGM 348
                ++++ V+ A         A  L  +M+  G  P+ +TY+     +         +
Sbjct: 265 T----FTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAML 320

Query: 349 EVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT---NPKPFSAFLAAC 405
           E+L+ M ++   P   T  T+   C K    D    +L+ +  C    +   ++  ++A 
Sbjct: 321 EMLEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAY 380

Query: 406 DTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAI 464
                   A K++ +M      P + TY  L              N+ S+        +I
Sbjct: 381 GRCGSRTYAFKMYDEMISSGFTPCLTTYNALL-------------NVLSRQGDWSTAQSI 427

Query: 465 EMDMARNNIQHSHISMKNLLK--ALGAEGMIRELIQYFCDSKTPLGT--PTYNTVLHSLV 520
              M +N  + +  S   LL+  A G      E I+     +  +GT  P++  +L +LV
Sbjct: 428 VSKMLKNGFKPNDQSYSLLLQCYAKGGNAAGIESIE----KEVYVGTIFPSW-VILRTLV 482

Query: 521 EAQESHRAME----IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFY 576
            A    R +E     F+++K  G  P+   +N M+   +    +  A+ +   + + G  
Sbjct: 483 IANFKCRRLEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLS 542

Query: 577 PQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFI 636
           P  +TY +L+ +     +  EA  +L  +    +  DV+ YNT++   C++G I   + I
Sbjct: 543 PDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRI 602

Query: 637 IEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
           + +M  + + P   T H +  GY +    N A E +  +
Sbjct: 603 LSEMIADGMAPCVVTYHTLVGGYASLEMFNEAREVVNYM 641



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 114/547 (20%), Positives = 212/547 (38%), Gaps = 102/547 (18%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y  ++Q   K G   EA  ++  + E  G  P    YN   G  A+      A  CLD M
Sbjct: 198 YNALLQVFGKAGNYTEALRVLKEM-EDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTM 256

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEI-----------WEDYIKHYSLSIFSL--- 230
            S+ +  N  TY  ++       N+  V E            +   +  Y+L IF +   
Sbjct: 257 TSKGLLPNTFTYNTVMTAYA---NVGRVDEALALFDRMKKNGYVPNVNTYNL-IFGMLGK 312

Query: 231 -RKFVWSFTRLRDLKSAYETLQHMV---ALAMMGKL----YINRTSEGRLRSSRLDIPIP 282
             +F      L ++  +  T   +     LA+ GK     Y+ R   G ++S  +++   
Sbjct: 313 KSRFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNG-MKSCGVELS-- 369

Query: 283 LNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDR 342
                     R +++ +I A GR  +   A ++  +M S G  P   TY+  +  +    
Sbjct: 370 ----------RDTYNTLISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQG 419

Query: 343 GLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFL 402
                  ++  M +N  KP D + + L    +K       E++  ++   T    F +++
Sbjct: 420 DWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNAAGIESIEKEVYVGT---IFPSWV 476

Query: 403 A---------ACDTMDKPERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMF 452
                      C  ++  E+A   F +++ Q  +PD+        +F ++ A Y +  ++
Sbjct: 477 ILRTLVIANFKCRRLEGVEKA---FQEVKAQGYKPDL-------VIFNSMLAMYAKNGLY 526

Query: 453 SQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTY 512
           S+        A EM                   ++   G+  +LI             TY
Sbjct: 527 SK--------ATEM-----------------FDSIKQSGLSPDLI-------------TY 548

Query: 513 NTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVR 572
           N+++    ++ ES  A +I KQ+K+  + P+  +YN +I+        K A  ++S M+ 
Sbjct: 549 NSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIA 608

Query: 573 DGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID- 631
           DG  P  +TY  L+        F+EA  +++ +    +    L Y  ++   C+  R D 
Sbjct: 609 DGMAPCVVTYHTLVGGYASLEMFNEAREVVNYMIHHNLKPMELTYRRVVDSYCKAKRYDE 668

Query: 632 VIEFIIE 638
             EF+ E
Sbjct: 669 AREFLSE 675


>gi|115462947|ref|NP_001055073.1| Os05g0275000 [Oryza sativa Japonica Group]
 gi|50878350|gb|AAT85125.1| unknown protein, contains pentatricopeptide (PPR) repeat, PF01535
           [Oryza sativa Japonica Group]
 gi|113578624|dbj|BAF16987.1| Os05g0275000 [Oryza sativa Japonica Group]
 gi|215695094|dbj|BAG90285.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 793

 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 66/260 (25%), Positives = 119/260 (45%), Gaps = 16/260 (6%)

Query: 396 KPFSAFLAACDTMDKPERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQ 454
           + ++  L A     + ERA+++FA++R Q + P I TY ++  ++G +            
Sbjct: 181 RAYTTVLHALSRAGRYERALQLFAELRRQGVVPTIVTYNVVLDVYGRMG----------- 229

Query: 455 VDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---T 511
             S  RI A+  +M    ++    +   ++ A G +G++ + + +F D K     P   T
Sbjct: 230 -RSWPRIVALLEEMRAAGVEPDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVT 288

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           YN +L    +A     A+ + K+M+  G  P+A TYN +    +    F+ A+  +  M 
Sbjct: 289 YNALLQVFGKAGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMT 348

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
             G  P T TY  ++    + G  DEAL L D +   G   +V  YN I     +K R  
Sbjct: 349 SKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFT 408

Query: 632 VIEFIIEQMHQNKVQPDPST 651
            +  ++E+M ++   P+  T
Sbjct: 409 AMLEMLEEMSRSGCTPNRVT 428



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 83/405 (20%), Positives = 174/405 (42%), Gaps = 30/405 (7%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSL---GLQPSSHTYDGFIRAIVSDRGLRNGMEV 350
           ++ S VI ACGR    GL +Q +   + L   G  P   TY+  ++           + V
Sbjct: 252 FTASTVIAACGR---DGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFGKAGNYTEALRV 308

Query: 351 LKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI-SRCTNPKPFS--AFLAACDT 407
           LK M+ +  +P   T   L+   ++A   + A   LD + S+   P  F+    + A   
Sbjct: 309 LKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYAN 368

Query: 408 MDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM 466
           + + + A+ +F +M++    P++ TY L+F + G                 ++    +EM
Sbjct: 369 VGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGK---------------KSRFTAMLEM 413

Query: 467 --DMARNNIQHSHISMKNLLKALGAEGM---IRELIQYFCDSKTPLGTPTYNTVLHSLVE 521
             +M+R+    + ++   +L   G  GM   +  ++         L   TYNT++ +   
Sbjct: 414 LEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGR 473

Query: 522 AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMT 581
                 A +++ +M + G  P   TYN +++  S    + +A ++VS M+++GF P   +
Sbjct: 474 CGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQS 533

Query: 582 YTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMH 641
           Y+ L++     G+     ++   V +  I    ++  T++    +  R++ +E   +++ 
Sbjct: 534 YSLLLQCYAKGGNAAGIESIEKEVYVGTIFPSWVILRTLVIANFKCRRLEGVEKAFQEVK 593

Query: 642 QNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
               +PD    + + + Y   G ++ A E    +    L  ++ T
Sbjct: 594 AQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPDLIT 638



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 95/207 (45%), Gaps = 5/207 (2%)

Query: 479 SMKNLLKALGAEGMIRELIQYFCDSKTPLGTP----TYNTVLHSLVEAQESHRAMEIFKQ 534
           +++ +++ALG EG    +     +   P G+      Y TVLH+L  A    RA+++F +
Sbjct: 146 ALEMVVRALGREGQHDVVCDLLDEMPLPPGSRLDVRAYTTVLHALSRAGRYERALQLFAE 205

Query: 535 MKTCGIPPNAATYNIMIDCCS-IIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYG 593
           ++  G+ P   TYN+++D    + R +    AL+  M   G  P   T + +I      G
Sbjct: 206 LRRQGVVPTIVTYNVVLDVYGRMGRSWPRIVALLEEMRAAGVEPDDFTASTVIAACGRDG 265

Query: 594 DFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCH 653
             D+A+   + +   G    V+ YN +L+   + G       ++++M  +  QPD  T +
Sbjct: 266 LLDQAVAFFEDLKARGHVPCVVTYNALLQVFGKAGNYTEALRVLKEMEDSGCQPDAVTYN 325

Query: 654 FVFSGYVNCGFHNSAMEALQVLSMRML 680
            +   Y   GF   A + L  ++ + L
Sbjct: 326 ELAGTYARAGFFEEAAKCLDTMTSKGL 352



 Score = 69.7 bits (169), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 116/584 (19%), Positives = 222/584 (38%), Gaps = 57/584 (9%)

Query: 120 LNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKL-HSMVHAN 178
           L+ + Y  ++ AL + G  E A  L   L  R G+ P +  YN  L    ++  S     
Sbjct: 178 LDVRAYTTVLHALSRAGRYERALQLFAEL-RRQGVVPTIVTYNVVLDVYGRMGRSWPRIV 236

Query: 179 LCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDY-IKHYSLSIFSLRKFVWSF 237
             L+ M +  V  ++ T + ++        L      +ED   + +   + +    +  F
Sbjct: 237 ALLEEMRAAGVEPDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQVF 296

Query: 238 TRLRDLKSAYETLQHM---------VALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPV 288
            +  +   A   L+ M         V    +   Y  R       +  LD       LP 
Sbjct: 297 GKAGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYA-RAGFFEEAAKCLDTMTSKGLLPN 355

Query: 289 MKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGM 348
                ++++ V+ A         A  L  +M+  G  P+ +TY+     +         +
Sbjct: 356 T----FTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAML 411

Query: 349 EVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT---NPKPFSAFLAAC 405
           E+L+ M ++   P   T  T+   C K    D    +L+ +  C    +   ++  ++A 
Sbjct: 412 EMLEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAY 471

Query: 406 DTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAI 464
                   A K++ +M      P + TY  L              N+ S+        +I
Sbjct: 472 GRCGSRTYAFKMYDEMISSGFTPCLTTYNALL-------------NVLSRQGDWSTAQSI 518

Query: 465 EMDMARNNIQHSHISMKNLLK-------ALGAEGMIRELIQYFCDSKTPLGT--PTYNTV 515
              M +N  + +  S   LL+       A G E + +E+          +GT  P++  +
Sbjct: 519 VSKMLKNGFKPNDQSYSLLLQCYAKGGNAAGIESIEKEVY---------VGTIFPSW-VI 568

Query: 516 LHSLVEAQESHRAME----IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           L +LV A    R +E     F+++K  G  P+   +N M+   +    +  A+ +   + 
Sbjct: 569 LRTLVIANFKCRRLEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSIK 628

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
           + G  P  +TY +L+ +     +  EA  +L  +    +  DV+ YNT++   C++G I 
Sbjct: 629 QSGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVINGFCKQGLIK 688

Query: 632 VIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
             + I+ +M  + + P   T H +  GY +    N A E +  +
Sbjct: 689 EAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFNEAREVVNYM 732



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 114/547 (20%), Positives = 212/547 (38%), Gaps = 102/547 (18%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y  ++Q   K G   EA  ++  + E  G  P    YN   G  A+      A  CLD M
Sbjct: 289 YNALLQVFGKAGNYTEALRVLKEM-EDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTM 347

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEI-----------WEDYIKHYSLSIFSL--- 230
            S+ +  N  TY  ++       N+  V E            +   +  Y+L IF +   
Sbjct: 348 TSKGLLPNTFTYNTVMTAYA---NVGRVDEALALFDRMKKNGYVPNVNTYNL-IFGMLGK 403

Query: 231 -RKFVWSFTRLRDLKSAYETLQHMV---ALAMMGKL----YINRTSEGRLRSSRLDIPIP 282
             +F      L ++  +  T   +     LA+ GK     Y+ R   G ++S  +++   
Sbjct: 404 KSRFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNG-MKSCGVELS-- 460

Query: 283 LNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDR 342
                     R +++ +I A GR  +   A ++  +M S G  P   TY+  +  +    
Sbjct: 461 ----------RDTYNTLISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQG 510

Query: 343 GLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFL 402
                  ++  M +N  KP D + + L    +K       E++  ++   T    F +++
Sbjct: 511 DWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNAAGIESIEKEVYVGT---IFPSWV 567

Query: 403 A---------ACDTMDKPERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMF 452
                      C  ++  E+A   F +++ Q  +PD+        +F ++ A Y +  ++
Sbjct: 568 ILRTLVIANFKCRRLEGVEKA---FQEVKAQGYKPDL-------VIFNSMLAMYAKNGLY 617

Query: 453 SQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTY 512
           S+        A EM                   ++   G+  +LI             TY
Sbjct: 618 SK--------ATEM-----------------FDSIKQSGLSPDLI-------------TY 639

Query: 513 NTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVR 572
           N+++    ++ ES  A +I KQ+K+  + P+  +YN +I+        K A  ++S M+ 
Sbjct: 640 NSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIA 699

Query: 573 DGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID- 631
           DG  P  +TY  L+        F+EA  +++ +    +    L Y  ++   C+  R D 
Sbjct: 700 DGMAPCVVTYHTLVGGYASLEMFNEAREVVNYMIHHNLKPMELTYRRVVDSYCKAKRYDE 759

Query: 632 VIEFIIE 638
             EF+ E
Sbjct: 760 AREFLSE 766


>gi|222634970|gb|EEE65102.1| hypothetical protein OsJ_20158 [Oryza sativa Japonica Group]
          Length = 552

 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 84/347 (24%), Positives = 154/347 (44%), Gaps = 17/347 (4%)

Query: 323 GLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLA 382
           G+ P+ +TY+  +RA+ +   L   + V+  M+     P   T  TL     +A ELD A
Sbjct: 5   GVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGA 64

Query: 383 EALLDQISRCTNPKP----FSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFS 437
           E ++  +    N KP    F++ +       + E A K+F +M R+ L PD+ +Y  L S
Sbjct: 65  ERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLS 124

Query: 438 LFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELI 497
            +  V   +E   +FS++     +  +   +   ++ H+     NL +A+     +RE  
Sbjct: 125 GYCKVGCLHESLAVFSEMTQRGLVPDV---VTFTSLIHATCKAGNLEQAVALVAQMRE-- 179

Query: 498 QYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC-CSI 556
                    +   T+  ++    +      A+   ++M+ CGI P+   YN +I+  C +
Sbjct: 180 -----RGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKL 234

Query: 557 IRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLL 616
            R    A  L+  M      P  +TY+ +I      G+ D A  L   +  +G+  D + 
Sbjct: 235 GR-MDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAIT 293

Query: 617 YNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
           Y+++++  CE+ R++    + E M Q  VQPD  T   +  G+   G
Sbjct: 294 YSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEG 340



 Score = 88.2 bits (217), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/262 (25%), Positives = 117/262 (44%), Gaps = 14/262 (5%)

Query: 412 ERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAI--EMDM 468
           E A+ +   MR     P+  TY  L + F              ++D A+R+ ++  E   
Sbjct: 27  EEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRA----------GELDGAERVVSLMREEGN 76

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRA 528
           A+ N+   +  +  L KA   EG  +   +   +   P    +YNT+L    +    H +
Sbjct: 77  AKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAP-DVVSYNTLLSGYCKVGCLHES 135

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
           + +F +M   G+ P+  T+  +I         + A ALV+ M   G     +T+TALI  
Sbjct: 136 LAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDG 195

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
               G  D+AL  ++ +   GI   V+ YN ++   C+ GR+D+   +I +M   +V+PD
Sbjct: 196 FCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPD 255

Query: 649 PSTCHFVFSGYVNCGFHNSAME 670
             T   + SGY   G  +SA +
Sbjct: 256 VVTYSTIISGYCKVGNLDSAFQ 277



 Score = 62.8 bits (151), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 71/150 (47%), Gaps = 1/150 (0%)

Query: 539 GIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEA 598
           G+ PN  TYNI++         + A  +V  M   G  P  +TY  L+      G+ D A
Sbjct: 5   GVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGA 64

Query: 599 LNLLDLVSLEG-IPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFS 657
             ++ L+  EG    +++ +N+++   C+ GR++    + ++M +  + PD  + + + S
Sbjct: 65  ERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLS 124

Query: 658 GYVNCGFHNSAMEALQVLSMRMLCEEVSTL 687
           GY   G  + ++     ++ R L  +V T 
Sbjct: 125 GYCKVGCLHESLAVFSEMTQRGLVPDVVTF 154



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 92/455 (20%), Positives = 171/455 (37%), Gaps = 62/455 (13%)

Query: 112 MMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKL 171
           M EE     N   +  M+  LCK G +E A  +   +  R G+ P +  YN+ L    K+
Sbjct: 71  MREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEM-VREGLAPDVVSYNTLLSGYCKV 129

Query: 172 HSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNL-SAVHEIWEDYIKHYSLSIFSL 230
             +  +      M  R +  + VT+T L+       NL  AV  + +   +   ++  + 
Sbjct: 130 GCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTF 189

Query: 231 RKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYI-NRTSEGRLRSSRLDIPIPLNALPVM 289
              +  F +   L  A   ++ M    +   +   N    G  +  R+D+   L  +  M
Sbjct: 190 TALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLAREL--IREM 247

Query: 290 KVLR-----WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGL 344
           +  R      ++S +I    +  N   A QL  +M   G+ P + TY   IR +  ++ L
Sbjct: 248 EAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRL 307

Query: 345 RNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAA 404
            +  E+ + M Q  ++P + T  TL     K   ++ A +L D++               
Sbjct: 308 NDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEM--------------- 352

Query: 405 CDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAI 464
                           +R+ + PD+ TY +L +         E   +  ++         
Sbjct: 353 ----------------IRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKL--------Y 388

Query: 465 EMDMARNNIQHSHI----------SMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPT 511
             D   +NI++  +          S+  LLK    +G+++E   + Q   D    L    
Sbjct: 389 HEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSV 448

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAAT 546
           Y+ ++H         +A+   KQM   G  PN+ +
Sbjct: 449 YSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTS 483



 Score = 58.9 bits (141), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 101/573 (17%), Positives = 213/573 (37%), Gaps = 100/573 (17%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y ++++ALC  G LEEA  ++  +    G  P    YN+ + A  +   +  A   + LM
Sbjct: 13  YNILVRALCARGRLEEAVGVVGDM-RGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLM 71

Query: 185 DSRMVGK-NEVTYTELLKLAVWQKNLSAVHEIWEDYIKH-YSLSIFSLRKFVWSFTRLRD 242
                 K N VT+  ++        +    +++++ ++   +  + S    +  + ++  
Sbjct: 72  REEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGC 131

Query: 243 LKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHA 302
           L  +      M    ++  +                                +F+ +IHA
Sbjct: 132 LHESLAVFSEMTQRGLVPDVV-------------------------------TFTSLIHA 160

Query: 303 CGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQ 362
             +  N   A  L+ QM+  GL+ +  T+   I        L + +  ++ M++  ++P 
Sbjct: 161 TCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPS 220

Query: 363 DSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMR 422
                 L     K   +DLA  L+ ++                                 
Sbjct: 221 VVCYNALINGYCKLGRMDLARELIREMEA------------------------------- 249

Query: 423 QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKN 482
           ++++PD+ TY  + S +  V      GN+    DSA ++N     M +  +    I+  +
Sbjct: 250 KRVKPDVVTYSTIISGYCKV------GNL----DSAFQLN---QKMLKKGVLPDAITYSS 296

Query: 483 LLKALGAEGMIRELIQYFCDSKTPLGTP----TYNTVLHSLVEAQESHRAMEIFKQMKTC 538
           L++ L  E  + +  + F ++   LG      TY T++    +     +A+ +  +M   
Sbjct: 297 LIRGLCEEKRLNDACELF-ENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRK 355

Query: 539 GIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEA 598
           G+ P+  TY+++I+  S     K A  L+  +  +   P  + Y AL+ +     +F   
Sbjct: 356 GVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALM-LCCSKAEFKSV 414

Query: 599 LNLLDLVSLEGIPH----------------DVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642
           + LL    ++G+                  D  +Y+ ++   C  G +       +QM +
Sbjct: 415 VALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLR 474

Query: 643 NKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
           +   P+ ++   +  G    G    A  A+Q L
Sbjct: 475 SGFSPNSTSTISLVRGLFEEGMVVEADNAIQDL 507



 Score = 47.0 bits (110), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 1/95 (1%)

Query: 570 MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
           MVR G  P   TY  L++ L   G  +EA+ ++  +   G   + + YNT++   C  G 
Sbjct: 1   MVRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGE 60

Query: 630 IDVIEFIIEQM-HQNKVQPDPSTCHFVFSGYVNCG 663
           +D  E ++  M  +   +P+  T + + +G    G
Sbjct: 61  LDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAG 95


>gi|125551633|gb|EAY97342.1| hypothetical protein OsI_19265 [Oryza sativa Indica Group]
          Length = 793

 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 66/260 (25%), Positives = 119/260 (45%), Gaps = 16/260 (6%)

Query: 396 KPFSAFLAACDTMDKPERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQ 454
           + ++  L A     + ERA+++FA++R Q + P I TY ++  ++G +            
Sbjct: 181 RAYTTVLHALSRAGRYERALQLFAELRRQGVVPTIVTYNVVLDVYGRMG----------- 229

Query: 455 VDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---T 511
             S  RI A+  +M    ++    +   ++ A G +G++ + + +F D K     P   T
Sbjct: 230 -RSWPRIVALLEEMRAAGVEPDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVT 288

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           YN +L    +A     A+ + K+M+  G  P+A TYN +    +    F+ A+  +  M 
Sbjct: 289 YNALLQVFGKAGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMT 348

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
             G  P T TY  ++    + G  DEAL L D +   G   +V  YN I     +K R  
Sbjct: 349 SKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFT 408

Query: 632 VIEFIIEQMHQNKVQPDPST 651
            +  ++E+M ++   P+  T
Sbjct: 409 AMLEMLEEMSRSGCTPNRVT 428



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 83/405 (20%), Positives = 174/405 (42%), Gaps = 30/405 (7%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSL---GLQPSSHTYDGFIRAIVSDRGLRNGMEV 350
           ++ S VI ACGR    GL +Q +   + L   G  P   TY+  ++           + V
Sbjct: 252 FTASTVIAACGR---DGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFGKAGNYTEALRV 308

Query: 351 LKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI-SRCTNPKPFS--AFLAACDT 407
           LK M+ +  +P   T   L+   ++A   + A   LD + S+   P  F+    + A   
Sbjct: 309 LKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYAN 368

Query: 408 MDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM 466
           + + + A+ +F +M++    P++ TY L+F + G                 ++    +EM
Sbjct: 369 VGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGK---------------KSRFTAMLEM 413

Query: 467 --DMARNNIQHSHISMKNLLKALGAEGM---IRELIQYFCDSKTPLGTPTYNTVLHSLVE 521
             +M+R+    + ++   +L   G  GM   +  ++         L   TYNT++ +   
Sbjct: 414 LEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGR 473

Query: 522 AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMT 581
                 A +++ +M + G  P   TYN +++  S    + +A ++VS M+++GF P   +
Sbjct: 474 CGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQS 533

Query: 582 YTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMH 641
           Y+ L++     G+     ++   V +  I    ++  T++    +  R++ +E   +++ 
Sbjct: 534 YSLLLQCYAKGGNAAGIESIEKEVYVGTIFPSWVILRTLVIANFKCRRLEGVEKAFQEVK 593

Query: 642 QNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
               +PD    + + + Y   G ++ A E    +    L  ++ T
Sbjct: 594 AQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPDLIT 638



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 95/207 (45%), Gaps = 5/207 (2%)

Query: 479 SMKNLLKALGAEGMIRELIQYFCDSKTPLGTP----TYNTVLHSLVEAQESHRAMEIFKQ 534
           +++ +++ALG EG    +     +   P G+      Y TVLH+L  A    RA+++F +
Sbjct: 146 ALEMVVRALGREGQHDVVCDLLDEMPLPPGSRLDVRAYTTVLHALSRAGRYERALQLFAE 205

Query: 535 MKTCGIPPNAATYNIMIDCCS-IIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYG 593
           ++  G+ P   TYN+++D    + R +    AL+  M   G  P   T + +I      G
Sbjct: 206 LRRQGVVPTIVTYNVVLDVYGRMGRSWPRIVALLEEMRAAGVEPDDFTASTVIAACGRDG 265

Query: 594 DFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCH 653
             D+A+   + +   G    V+ YN +L+   + G       ++++M  +  QPD  T +
Sbjct: 266 LLDQAVAFFEDLKARGHVPCVVTYNALLQVFGKAGNYTEALRVLKEMEDSGCQPDAVTYN 325

Query: 654 FVFSGYVNCGFHNSAMEALQVLSMRML 680
            +   Y   GF   A + L  ++ + L
Sbjct: 326 ELAGTYARAGFFEEAAKCLDTMTSKGL 352



 Score = 69.7 bits (169), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 116/584 (19%), Positives = 222/584 (38%), Gaps = 57/584 (9%)

Query: 120 LNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKL-HSMVHAN 178
           L+ + Y  ++ AL + G  E A  L   L  R G+ P +  YN  L    ++  S     
Sbjct: 178 LDVRAYTTVLHALSRAGRYERALQLFAEL-RRQGVVPTIVTYNVVLDVYGRMGRSWPRIV 236

Query: 179 LCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDY-IKHYSLSIFSLRKFVWSF 237
             L+ M +  V  ++ T + ++        L      +ED   + +   + +    +  F
Sbjct: 237 ALLEEMRAAGVEPDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQVF 296

Query: 238 TRLRDLKSAYETLQHM---------VALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPV 288
            +  +   A   L+ M         V    +   Y  R       +  LD       LP 
Sbjct: 297 GKAGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYA-RAGFFEEAAKCLDTMTSKGLLPN 355

Query: 289 MKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGM 348
                ++++ V+ A         A  L  +M+  G  P+ +TY+     +         +
Sbjct: 356 T----FTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAML 411

Query: 349 EVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT---NPKPFSAFLAAC 405
           E+L+ M ++   P   T  T+   C K    D    +L+ +  C    +   ++  ++A 
Sbjct: 412 EMLEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAY 471

Query: 406 DTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAI 464
                   A K++ +M      P + TY  L              N+ S+        +I
Sbjct: 472 GRCGSRTYAFKMYDEMISSGFTPCLTTYNALL-------------NVLSRQGDWSTAQSI 518

Query: 465 EMDMARNNIQHSHISMKNLLK-------ALGAEGMIRELIQYFCDSKTPLGT--PTYNTV 515
              M +N  + +  S   LL+       A G E + +E+          +GT  P++  +
Sbjct: 519 VSKMLKNGFKPNDQSYSLLLQCYAKGGNAAGIESIEKEVY---------VGTIFPSW-VI 568

Query: 516 LHSLVEAQESHRAME----IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           L +LV A    R +E     F+++K  G  P+   +N M+   +    +  A+ +   + 
Sbjct: 569 LRTLVIANFKCRRLEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSIK 628

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
           + G  P  +TY +L+ +     +  EA  +L  +    +  DV+ YNT++   C++G I 
Sbjct: 629 QSGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVINGFCKQGLIK 688

Query: 632 VIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
             + I+ +M  + + P   T H +  GY +    N A E +  +
Sbjct: 689 EAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFNEAREVVNYM 732



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 114/547 (20%), Positives = 212/547 (38%), Gaps = 102/547 (18%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y  ++Q   K G   EA  ++  + E  G  P    YN   G  A+      A  CLD M
Sbjct: 289 YNALLQVFGKAGNYTEALRVLKEM-EDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTM 347

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEI-----------WEDYIKHYSLSIFSL--- 230
            S+ +  N  TY  ++       N+  V E            +   +  Y+L IF +   
Sbjct: 348 TSKGLLPNTFTYNTVMTAYA---NVGRVDEALALFDRMKKNGYVPNVNTYNL-IFGMLGK 403

Query: 231 -RKFVWSFTRLRDLKSAYETLQHMV---ALAMMGKL----YINRTSEGRLRSSRLDIPIP 282
             +F      L ++  +  T   +     LA+ GK     Y+ R   G ++S  +++   
Sbjct: 404 KSRFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNG-MKSCGVELS-- 460

Query: 283 LNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDR 342
                     R +++ +I A GR  +   A ++  +M S G  P   TY+  +  +    
Sbjct: 461 ----------RDTYNTLISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQG 510

Query: 343 GLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFL 402
                  ++  M +N  KP D + + L    +K       E++  ++   T    F +++
Sbjct: 511 DWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNAAGIESIEKEVYVGT---IFPSWV 567

Query: 403 A---------ACDTMDKPERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMF 452
                      C  ++  E+A   F +++ Q  +PD+        +F ++ A Y +  ++
Sbjct: 568 ILRTLVIANFKCRRLEGVEKA---FQEVKAQGYKPDL-------VIFNSMLAMYAKNGLY 617

Query: 453 SQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTY 512
           S+        A EM                   ++   G+  +LI             TY
Sbjct: 618 SK--------ATEM-----------------FDSIKQSGLSPDLI-------------TY 639

Query: 513 NTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVR 572
           N+++    ++ ES  A +I KQ+K+  + P+  +YN +I+        K A  ++S M+ 
Sbjct: 640 NSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIA 699

Query: 573 DGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID- 631
           DG  P  +TY  L+        F+EA  +++ +    +    L Y  ++   C+  R D 
Sbjct: 700 DGMAPCVVTYHTLVGGYASLEMFNEAREVVNYMIHHNLKPMELTYRRVVDSYCKAKRYDE 759

Query: 632 VIEFIIE 638
             EF+ E
Sbjct: 760 AREFLSE 766


>gi|334188438|ref|NP_200395.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332009303|gb|AED96686.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1136

 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 122/577 (21%), Positives = 232/577 (40%), Gaps = 55/577 (9%)

Query: 106 VMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFL 165
           +M T+R+        N   Y ++++   + G ++++  +   +G  YG  P +   N+ L
Sbjct: 152 LMTTYRLCNS-----NPSVYDILIRVYLREGMIQDSLEIFRLMG-LYGFNPSVYTCNAIL 205

Query: 166 GACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH-YS 224
           G+  K    V     L  M  R +  +  T+  L+ +   + +      + +   K  Y+
Sbjct: 206 GSVVKSGEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYA 265

Query: 225 LSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYI-----------NRTSEGRL- 272
            +I +    +  + +    K+A E L HM +  +   +             NR ++G L 
Sbjct: 266 PTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLL 325

Query: 273 -RSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTY 331
            R  R  +  P            +++ +I+         +A QL+ +M S GL P+  T+
Sbjct: 326 LRDMRKRMIHPNEV---------TYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTF 376

Query: 332 DGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR 391
           +  I   +S+   +  +++  +M+   L P + +   L     K  E DLA     ++ R
Sbjct: 377 NALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKR 436

Query: 392 ---CTNPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYE 447
              C     ++  +         + A+ +  +M +  + PDI TY  L            
Sbjct: 437 NGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALI----------- 485

Query: 448 EGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPL 507
             N F +V   K    I   + R  +  + I    L+      G ++E I+ + ++    
Sbjct: 486 --NGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIY-EAMILE 542

Query: 508 GTP----TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSA 563
           G      T+N ++ SL +A +   A E  + M + GI PN  +++ +I+          A
Sbjct: 543 GHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKA 602

Query: 564 SALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPH--DVLLYNTIL 621
            ++   M + G +P   TY +L+K L   G   EA   L   SL  +P   D ++YNT+L
Sbjct: 603 FSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLK--SLHAVPAAVDTVMYNTLL 660

Query: 622 KKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
              C+ G +     +  +M Q  + PD  T   + SG
Sbjct: 661 TAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISG 697



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 88/184 (47%), Gaps = 3/184 (1%)

Query: 483 LLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCG 539
           L++    EGMI++ ++ F         P   T N +L S+V++ E        K+M    
Sbjct: 169 LIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRK 228

Query: 540 IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEAL 599
           I P+ AT+NI+I+       F+ +S L+  M + G+ P  +TY  ++      G F  A+
Sbjct: 229 ICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAI 288

Query: 600 NLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
            LLD +  +G+  DV  YN ++   C   RI     ++  M +  + P+  T + + +G+
Sbjct: 289 ELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGF 348

Query: 660 VNCG 663
            N G
Sbjct: 349 SNEG 352



 Score = 75.9 bits (185), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 79/373 (21%), Positives = 148/373 (39%), Gaps = 49/373 (13%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ V+H   +      A +L+  M+S G+     TY+  I  +     +  G  +L+ M
Sbjct: 270 TYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDM 329

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQI---SRCTNPKPFSAFLAACDTMDKP 411
           ++  + P + T  TL    S   ++ +A  LL+++       N   F+A +    +    
Sbjct: 330 RKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNF 389

Query: 412 ERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           + A+K+F  M  K L P   +Y +L       NA ++    F             M M R
Sbjct: 390 KEALKMFYMMEAKGLTPSEVSYGVLLDGLCK-NAEFDLARGFY------------MRMKR 436

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAME 530
           N +    I+   ++  L   G + E                                A+ 
Sbjct: 437 NGVCVGRITYTGMIDGLCKNGFLDE--------------------------------AVV 464

Query: 531 IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590
           +  +M   GI P+  TY+ +I+    +  FK+A  +V  + R G  P  + Y+ LI    
Sbjct: 465 LLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCC 524

Query: 591 DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650
             G   EA+ + + + LEG   D   +N ++   C+ G++   E  +  M  + + P+  
Sbjct: 525 RMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTV 584

Query: 651 TCHFVFSGYVNCG 663
           +   + +GY N G
Sbjct: 585 SFDCLINGYGNSG 597



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 58/259 (22%), Positives = 111/259 (42%), Gaps = 16/259 (6%)

Query: 421 MRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISM 480
           +++K+ PD+ T+ +L      +N    EG       S ++ + +   M ++    + ++ 
Sbjct: 225 LKRKICPDVATFNIL------INVLCAEG-------SFEKSSYLMQKMEKSGYAPTIVTY 271

Query: 481 KNLLKALGAEGMIR---ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKT 537
             +L     +G  +   EL+ +           TYN ++H L  +    +   + + M+ 
Sbjct: 272 NTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRK 331

Query: 538 CGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDE 597
             I PN  TYN +I+  S       AS L++ M+  G  P  +T+ ALI   +  G+F E
Sbjct: 332 RMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKE 391

Query: 598 ALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFS 657
           AL +  ++  +G+    + Y  +L   C+    D+      +M +N V     T   +  
Sbjct: 392 ALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMID 451

Query: 658 GYVNCGFHNSAMEALQVLS 676
           G    GF + A+  L  +S
Sbjct: 452 GLCKNGFLDEAVVLLNEMS 470



 Score = 65.9 bits (159), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 119/612 (19%), Positives = 236/612 (38%), Gaps = 56/612 (9%)

Query: 93  ILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERY 152
           IL    +S + + V    + M +++I  +   + +++  LC  G  E++S L+  + E+ 
Sbjct: 204 ILGSVVKSGEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKM-EKS 262

Query: 153 GIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAV 212
           G  P +  YN+ L    K      A   LD M S+ V  +  TY  L+        ++  
Sbjct: 263 GYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKG 322

Query: 213 HEIWEDYIKH-YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAM------MGKLYIN 265
           + +  D  K     +  +    +  F+    +  A + L  M++  +         L   
Sbjct: 323 YLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDG 382

Query: 266 RTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHAC---GRTQNS--GLAEQLMLQMQ 320
             SEG  + +       L    +M+    + S+V +     G  +N+   LA    ++M+
Sbjct: 383 HISEGNFKEA-------LKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMK 435

Query: 321 SLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELD 380
             G+     TY G I  +  +  L   + +L  M ++ + P   T + L     K     
Sbjct: 436 RNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFK 495

Query: 381 LAEALLDQISRCT---NPKPFSAFLAACDTMDKPERAIKIF-AKMRQKLRPDIRTYELLF 436
            A+ ++ +I R     N   +S  +  C  M   + AI+I+ A + +    D  T+ +L 
Sbjct: 496 TAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLV 555

Query: 437 SLFGNVNAPYEEGNMFSQVDSAKRI--NAIEMDMARNNIQHSHISMK------------- 481
           +          E   F +  ++  I  N +  D   N   +S   +K             
Sbjct: 556 TSLCKA-GKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGH 614

Query: 482 --------NLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAME 530
                   +LLK L   G +RE    ++        + T  YNT+L ++ ++    +A+ 
Sbjct: 615 HPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVS 674

Query: 531 IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALV---SMMVRDGFYPQTMTYTALIK 587
           +F +M    I P++ TY  +I    + R  K+  A++       R    P  + YT  + 
Sbjct: 675 LFGEMVQRSILPDSYTYTSLIS--GLCRKGKTVIAILFAKEAEARGNVLPNKVMYTCFVD 732

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
            +   G +   +   + +   G   D++  N ++      G+I+    ++ +M      P
Sbjct: 733 GMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGP 792

Query: 648 DPSTCHFVFSGY 659
           + +T + +  GY
Sbjct: 793 NLTTYNILLHGY 804



 Score = 62.8 bits (151), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 112/564 (19%), Positives = 211/564 (37%), Gaps = 62/564 (10%)

Query: 107 METWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLG 166
           ++ + MME K +  +   Y +++  LCK    + A    Y   +R G+      Y   + 
Sbjct: 393 LKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGF-YMRMKRNGVCVGRITYTGMID 451

Query: 167 ACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELL----KLAVWQKNLSAVHEIWEDYIKH 222
              K   +  A + L+ M    +  + VTY+ L+    K+  ++     V  I+   +  
Sbjct: 452 GLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSP 511

Query: 223 YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIP 282
             + I+S    +++  R+  LK A    + M+              EG  R         
Sbjct: 512 NGI-IYS--TLIYNCCRMGCLKEAIRIYEAMIL-------------EGHTRD-------- 547

Query: 283 LNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIV-SD 341
                      ++F+ ++ +  +      AE+ M  M S G+ P++ ++D  I     S 
Sbjct: 548 ----------HFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSG 597

Query: 342 RGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ---ISRCTNPKPF 398
            GL+    V   M +    P   T  +L     K   L  AE  L     +    +   +
Sbjct: 598 EGLK-AFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMY 656

Query: 399 SAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDS 457
           +  L A        +A+ +F +M Q+ + PD  TY  L S          +G     +  
Sbjct: 657 NTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLIS------GLCRKGKTVIAILF 710

Query: 458 AKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLG-TP---TYN 513
           AK   A      R N+  + +     +  +   G  +  I YF +    LG TP   T N
Sbjct: 711 AKEAEA------RGNVLPNKVMYTCFVDGMFKAGQWKAGI-YFREQMDNLGHTPDIVTTN 763

Query: 514 TVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRD 573
            ++       +  +  ++  +M      PN  TYNI++   S  +   ++  L   ++ +
Sbjct: 764 AMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILN 823

Query: 574 GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVI 633
           G  P  +T  +L+  + +    +  L +L      G+  D   +N ++ K C  G I+  
Sbjct: 824 GILPDKLTCHSLVLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWA 883

Query: 634 EFIIEQMHQNKVQPDPSTCHFVFS 657
             +++ M    +  D  TC  + S
Sbjct: 884 FDLVKVMTSLGISLDKDTCDAMVS 907



 Score = 47.4 bits (111), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 109/611 (17%), Positives = 220/611 (36%), Gaps = 86/611 (14%)

Query: 113  MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
            M+   + +    Y  M+  LCK G+L+EA  L+  +  + GI P +  Y++ +    K+ 
Sbjct: 434  MKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEM-SKDGIDPDIVTYSALINGFCKVG 492

Query: 173  SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYSLSIFSLR 231
                A   +  +    +  N + Y+ L+        L     I+E  I + ++   F+  
Sbjct: 493  RFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFN 552

Query: 232  KFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKV 291
              V S  +   +  A E ++ M             TS+G L ++                
Sbjct: 553  VLVTSLCKAGKVAEAEEFMRCM-------------TSDGILPNT---------------- 583

Query: 292  LRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVL 351
               SF  +I+  G +     A  +  +M  +G  P+  TY   ++ +     LR   + L
Sbjct: 584  --VSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFL 641

Query: 352  KIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPKPFSAFLAACDTMDK 410
            K +             TL     K+  L  A +L  + + R   P  ++          K
Sbjct: 642  KSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRK 701

Query: 411  PERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
             +  I I      + R ++   +++++ F  V+  ++ G   + +   ++++        
Sbjct: 702  GKTVIAILFAKEAEARGNVLPNKVMYTCF--VDGMFKAGQWKAGIYFREQMD-------- 751

Query: 471  NNIQHSH--ISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQES 525
             N+ H+   ++   ++      G I +      +     G P   TYN +LH   + ++ 
Sbjct: 752  -NLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDV 810

Query: 526  HRAMEIFKQMKTCGIPPNAAT-----------------------------------YNIM 550
              +  +++ +   GI P+  T                                   +N++
Sbjct: 811  STSFLLYRSIILNGILPDKLTCHSLVLGICESNMLEIGLKILKAFICRGVEVDRYTFNML 870

Query: 551  IDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGI 610
            I  C        A  LV +M   G      T  A++ +L     F E+  +L  +S +GI
Sbjct: 871  ISKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQESRMVLHEMSKQGI 930

Query: 611  PHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAME 670
              +   Y  ++   C  G I     + E+M  +K+ P       +      CG  + A  
Sbjct: 931  SPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRALAKCGKADEATL 990

Query: 671  ALQ-VLSMRML 680
             L+ +L M+++
Sbjct: 991  LLRFMLKMKLV 1001



 Score = 47.4 bits (111), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 90/487 (18%), Positives = 185/487 (37%), Gaps = 43/487 (8%)

Query: 125  YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILP--VYNSFLGACAKLHSMVHANLCLD 182
            Y  +++ LCKGG+L EA     FL   + +   +   +YN+ L A  K  ++  A     
Sbjct: 621  YGSLLKGLCKGGHLREAEK---FLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFG 677

Query: 183  LMDSRMVGKNEVTYTELLK---------LAV-WQKNLSAVHEIWEDYIKHYSLSIFSLRK 232
             M  R +  +  TYT L+          +A+ + K   A   +  + + +        + 
Sbjct: 678  EMVQRSILPDSYTYTSLISGLCRKGKTVIAILFAKEAEARGNVLPNKVMYTCFVDGMFKA 737

Query: 233  FVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIP--IPLNALPVMK 290
              W        +   + L H   +     +    +  G++  +   +P     N  P + 
Sbjct: 738  GQWKAGIY--FREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLT 795

Query: 291  VLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEV 350
                +++ ++H   + ++   +  L   +   G+ P   T    +  I     L  G+++
Sbjct: 796  ----TYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSLVLGICESNMLEIGLKI 851

Query: 351  LKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT---NPKPFSAFLAACDT 407
            LK      ++    T   L  +C    E++ A  L+  ++      +     A ++  + 
Sbjct: 852  LKAFICRGVEVDRYTFNMLISKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNR 911

Query: 408  MDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM 466
              + + +  +  +M +Q + P+ R Y       G +N          +V   K    ++ 
Sbjct: 912  NHRFQESRMVLHEMSKQGISPESRKY------IGLING-------LCRVGDIKTAFVVKE 958

Query: 467  DMARNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQ 523
            +M  + I   +++   +++AL   G   E   L+++    K      ++ T++H   +  
Sbjct: 959  EMIAHKICPPNVAESAMVRALAKCGKADEATLLLRFMLKMKLVPTIASFTTLMHLCCKNG 1018

Query: 524  ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
                A+E+   M  CG+  +  +YN++I           A  L   M  DGF     TY 
Sbjct: 1019 NVIEALELRVVMSNCGLKLDLVSYNVLITGLCAKGDMALAFELYEEMKGDGFLANATTYK 1078

Query: 584  ALIKILL 590
            ALI+ LL
Sbjct: 1079 ALIRGLL 1085



 Score = 41.6 bits (96), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 71/145 (48%), Gaps = 10/145 (6%)

Query: 512  YNTVLHSLVEAQESHRAMEIFKQM---KTCGIPPNAATYNIMIDCCSIIRCFKS--ASAL 566
            Y  +++ L    +   A  + ++M   K C  PPN A  + M+   ++ +C K+  A+ L
Sbjct: 937  YIGLINGLCRVGDIKTAFVVKEEMIAHKIC--PPNVAE-SAMVR--ALAKCGKADEATLL 991

Query: 567  VSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE 626
            +  M++    P   ++T L+ +    G+  EAL L  ++S  G+  D++ YN ++   C 
Sbjct: 992  LRFMLKMKLVPTIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYNVLITGLCA 1051

Query: 627  KGRIDVIEFIIEQMHQNKVQPDPST 651
            KG + +   + E+M  +    + +T
Sbjct: 1052 KGDMALAFELYEEMKGDGFLANATT 1076


>gi|297797589|ref|XP_002866679.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312514|gb|EFH42938.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 915

 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 132/595 (22%), Positives = 245/595 (41%), Gaps = 61/595 (10%)

Query: 93  ILNYCARSPDPLFVMETWRMMEEKE-----IGLNNKCYLLMMQALCKGGYLEEASNLIYF 147
           ++  C    D LFV++  R M + E       L   CY  ++ +L + G ++E    +Y 
Sbjct: 149 MIKSCDSVADTLFVLDLCRKMNKDESFELKYKLIIGCYNTLLNSLARFGLVDEMKQ-VYM 207

Query: 148 LGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQK 207
                 + P +  YN  +    K+ ++  AN  + ++    +  +  TYT L+     +K
Sbjct: 208 EMLEDKVCPNIYTYNKMVNGYCKVGNVEEANQYVSMIVEAGLDPDFFTYTSLIMGYCQRK 267

Query: 208 NLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRT 267
           +L +  +++++                      R  + AY  L H + +           
Sbjct: 268 DLDSAFKVFKE----------------MPLKGCRRNEVAYTHLIHGLCV----------- 300

Query: 268 SEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPS 327
            E R+  + +D+ + +        +R +++ +I A   ++    A  L+ +M+  G++P+
Sbjct: 301 -ERRIDEA-MDLFVKMKDDDCYPTVR-TYTVLIKALCGSERKSEALNLVKEMEEKGIKPN 357

Query: 328 SHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTI-ATLSVECSKAL---ELDLAE 383
            HTY   I ++ S   L    E+L  M +  L P   T  A ++  C + +    LD+ E
Sbjct: 358 IHTYTVLIDSLCSQCKLEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDALDVVE 417

Query: 384 ALLDQISRCTNPKPFSAFLAA-CDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGN 441
            L++  +   N + ++  +   C       +A+ +  KM  +K+ PD+ TY  L      
Sbjct: 418 -LMESRNLRPNTRTYNELIKGYCKR--NVHKAMGVLNKMLERKVLPDVVTYNSL------ 468

Query: 442 VNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFC 501
           ++     GN     DSA R+ ++  D        ++ SM   + +L     + E    F 
Sbjct: 469 IDGQCRSGNF----DSAYRLLSLMNDRGLVPDPWTYTSM---IDSLCKSKRVEEACDLFD 521

Query: 502 DSKTPLGTPT---YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIR 558
             +     P    Y  ++    +A + + A  + ++M +    PN+ T+N +I       
Sbjct: 522 SLEQKDVIPNVVMYTALIDGYCKAGKVNEAHLMLEKMLSKNCLPNSLTFNALIHGLCTDG 581

Query: 559 CFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYN 618
             K A+ L   MV+    P   T T LI  LL  GDFD A      +   G   D   Y 
Sbjct: 582 KLKEATLLEEKMVKIDLQPTVSTDTILIHRLLKDGDFDHAYRRFQQMLSSGTKPDAHTYT 641

Query: 619 TILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           T ++  C +GR+   E ++ +M +N V PD  T   +  GY + G  NSA   L+
Sbjct: 642 TFIQTYCREGRLQDAEDMVAKMKENGVSPDLFTYSSLIKGYGDLGRTNSAFVVLK 696



 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 124/563 (22%), Positives = 233/563 (41%), Gaps = 48/563 (8%)

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
           MEEK I  N   Y +++ +LC    LE+A  L+  + E+ G+ P +  YN+ +    K  
Sbjct: 349 MEEKGIKPNIHTYTVLIDSLCSQCKLEKARELLGQMLEK-GLMPNVITYNALINGYCKRG 407

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSL-SIFSLR 231
            +  A   ++LM+SR +  N  TY EL+K    ++N+     +    ++   L  + +  
Sbjct: 408 MIEDALDVVELMESRNLRPNTRTYNELIK-GYCKRNVHKAMGVLNKMLERKVLPDVVTYN 466

Query: 232 KFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRL-RSSRLDIPIPL------- 283
             +    R  +  SAY  L  M    ++   +   +    L +S R++    L       
Sbjct: 467 SLIDGQCRSGNFDSAYRLLSLMNDRGLVPDPWTYTSMIDSLCKSKRVEEACDLFDSLEQK 526

Query: 284 NALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRG 343
           + +P + V+  +  D     G+   + L  + ML    L   P+S T++  I  + +D  
Sbjct: 527 DVIPNV-VMYTALIDGYCKAGKVNEAHLMLEKMLSKNCL---PNSLTFNALIHGLCTDGK 582

Query: 344 LRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPKP--FSA 400
           L+    + + M + +L+P  ST   L     K  + D A     Q +S  T P    ++ 
Sbjct: 583 LKEATLLEEKMVKIDLQPTVSTDTILIHRLLKDGDFDHAYRRFQQMLSSGTKPDAHTYTT 642

Query: 401 FLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAK 459
           F+       + + A  + AKM++  + PD+ TY  L   +G++      G   S     K
Sbjct: 643 FIQTYCREGRLQDAEDMVAKMKENGVSPDLFTYSSLIKGYGDL------GRTNSAFVVLK 696

Query: 460 RINAIEMDMARNNIQHSHISM-KNLL-----KALGAE------------GMIRELIQYFC 501
           R++    D      QH+ +S+ K+LL     K  G E             ++ EL++   
Sbjct: 697 RMH----DTGCEPSQHTFLSLIKHLLEMKYGKVKGGEPGVCVMSNMMEFDIVVELLEKMV 752

Query: 502 DSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTC-GIPPNAATYNIMIDCCSIIRCF 560
           +        +Y  ++  + E      A ++F  M+   GI P+   +N ++ CC  +   
Sbjct: 753 EHGVTPNAKSYEKLMLGICEIGNLRVAEKVFDHMQQKEGISPSELVFNALLSCCCKLEKH 812

Query: 561 KSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTI 620
             A+ +V  M+  G  PQ  +   LI  L   G+ +   ++   +   G   D L +  I
Sbjct: 813 NEAAKVVDDMICVGHLPQLESCKILICRLYKKGEKERGTSVFQNLLQCGYYDDELAWKII 872

Query: 621 LKKACEKGRIDVIEFIIEQMHQN 643
           +    ++G ++    +   M +N
Sbjct: 873 IDGVGKQGLVEAFYELFNVMEKN 895



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 65/292 (22%), Positives = 121/292 (41%), Gaps = 12/292 (4%)

Query: 402 LAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLF-GNVNAPYEEGNMFSQVDSAKR 460
           + +CD++      + +  KM +       ++EL + L  G  N        F  VD  K+
Sbjct: 150 IKSCDSVADTLFVLDLCRKMNKD-----ESFELKYKLIIGCYNTLLNSLARFGLVDEMKQ 204

Query: 461 INAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLH 517
           +    M+M  + +  +  +   ++      G + E  QY          P   TY +++ 
Sbjct: 205 VY---MEMLEDKVCPNIYTYNKMVNGYCKVGNVEEANQYVSMIVEAGLDPDFFTYTSLIM 261

Query: 518 SLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYP 577
              + ++   A ++FK+M   G   N   Y  +I    + R    A  L   M  D  YP
Sbjct: 262 GYCQRKDLDSAFKVFKEMPLKGCRRNEVAYTHLIHGLCVERRIDEAMDLFVKMKDDDCYP 321

Query: 578 QTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFII 637
              TYT LIK L       EALNL+  +  +GI  ++  Y  ++   C + +++    ++
Sbjct: 322 TVRTYTVLIKALCGSERKSEALNLVKEMEEKGIKPNIHTYTVLIDSLCSQCKLEKARELL 381

Query: 638 EQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEE 689
            QM +  + P+  T + + +GY   G    A++ ++++  R L     T  E
Sbjct: 382 GQMLEKGLMPNVITYNALINGYCKRGMIEDALDVVELMESRNLRPNTRTYNE 433



 Score = 63.9 bits (154), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 77/175 (44%), Gaps = 1/175 (0%)

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           Y  ++H L   +    AM++F +MK     P   TY ++I           A  LV  M 
Sbjct: 291 YTHLIHGLCVERRIDEAMDLFVKMKDDDCYPTVRTYTVLIKALCGSERKSEALNLVKEME 350

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
             G  P   TYT LI  L      ++A  LL  +  +G+  +V+ YN ++   C++G I+
Sbjct: 351 EKGIKPNIHTYTVLIDSLCSQCKLEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIE 410

Query: 632 VIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
               ++E M    ++P+  T + +  GY     H  AM  L  +  R +  +V T
Sbjct: 411 DALDVVELMESRNLRPNTRTYNELIKGYCKRNVHK-AMGVLNKMLERKVLPDVVT 464



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 132/616 (21%), Positives = 240/616 (38%), Gaps = 75/616 (12%)

Query: 108 ETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGA 167
           + +  M E ++  N   Y  M+   CK G +EEA+  +  + E  G+ P    Y S +  
Sbjct: 204 QVYMEMLEDKVCPNIYTYNKMVNGYCKVGNVEEANQYVSMIVEA-GLDPDFFTYTSLIMG 262

Query: 168 CAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLK-LAVWQKNLSAVHEIWEDYIKHYSLS 226
             +   +  A      M  +   +NEV YT L+  L V ++    + E  + ++K     
Sbjct: 263 YCQRKDLDSAFKVFKEMPLKGCRRNEVAYTHLIHGLCVERR----IDEAMDLFVKMKDDD 318

Query: 227 IF-SLRKFVWSFTRLRDLKSAYETLQHMVALAMMG---------KLYINRTSEGRLRSSR 276
            + ++R +      L   +   E L  +  +   G          L  +  S+ +L  +R
Sbjct: 319 CYPTVRTYTVLIKALCGSERKSEALNLVKEMEEKGIKPNIHTYTVLIDSLCSQCKLEKAR 378

Query: 277 LDIPIPLNALPVMKVLRWSFSDVIHA-CGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFI 335
             +   L    +  V+  +++ +I+  C R       + + L M+S  L+P++ TY+  I
Sbjct: 379 ELLGQMLEKGLMPNVI--TYNALINGYCKRGMIEDALDVVEL-MESRNLRPNTRTYNELI 435

Query: 336 RAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQIS-RCTN 394
           +     R +   M VL  M +  + P   T  +L     ++   D A  LL  ++ R   
Sbjct: 436 KGYCK-RNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLV 494

Query: 395 PKPFSAFLAACDTMDKPER---AIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGN 450
           P P++ + +  D++ K +R   A  +F  + QK + P++  Y  L   +       E   
Sbjct: 495 PDPWT-YTSMIDSLCKSKRVEEACDLFDSLEQKDVIPNVVMYTALIDGYCKAGKVNEAHL 553

Query: 451 MFSQVDSA----------------------KRINAIEMDMARNNIQHS----HISMKNLL 484
           M  ++ S                       K    +E  M + ++Q +     I +  LL
Sbjct: 554 MLEKMLSKNCLPNSLTFNALIHGLCTDGKLKEATLLEEKMVKIDLQPTVSTDTILIHRLL 613

Query: 485 KALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNA 544
           K    +   R   Q       P    TY T + +         A ++  +MK  G+ P+ 
Sbjct: 614 KDGDFDHAYRRFQQMLSSGTKP-DAHTYTTFIQTYCREGRLQDAEDMVAKMKENGVSPDL 672

Query: 545 ATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLD--YG--------- 593
            TY+ +I     +    SA  ++  M   G  P   T+ +LIK LL+  YG         
Sbjct: 673 FTYSSLIKGYGDLGRTNSAFVVLKRMHDTGCEPSQHTFLSLIKHLLEMKYGKVKGGEPGV 732

Query: 594 -------DFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
                  +FD  + LL+ +   G+  +   Y  ++   CE G + V E + + M Q K  
Sbjct: 733 CVMSNMMEFDIVVELLEKMVEHGVTPNAKSYEKLMLGICEIGNLRVAEKVFDHMQQ-KEG 791

Query: 647 PDPSTCHFVFSGYVNC 662
             PS    VF+  ++C
Sbjct: 792 ISPS--ELVFNALLSC 805


>gi|449453087|ref|XP_004144290.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
 gi|449522905|ref|XP_004168466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 915

 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 124/586 (21%), Positives = 232/586 (39%), Gaps = 57/586 (9%)

Query: 100 SPDPLFVMETWRMMEEK----EIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIY 155
           S + LFV+E  R M  +    +  L  +CY +++  L +   ++E  + +Y       + 
Sbjct: 143 SENALFVLEMLRSMNRRVDAFKFKLTLRCYNMLLMLLSRFLMIDEMKS-VYLEMLDDMVT 201

Query: 156 PILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEI 215
           P +   N+ +    KL ++V A L +  +    +  +  TYT L+      KN+ A + I
Sbjct: 202 PNIFTLNTMVNGYCKLGNVVEAELYVSKIVQAGLSLDTFTYTSLILGYCRNKNVDAANAI 261

Query: 216 WEDYIKHYSL-SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRS 274
           +        L +  S    +  F   R +  A +    M                     
Sbjct: 262 FLSMPNKGCLRNEVSYTNLIHGFCEARRVDEALKLFSQMHED------------------ 303

Query: 275 SRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGF 334
                    N  P ++    +++ +I A  +      A  +  +M     QP+ HTY   
Sbjct: 304 ---------NCWPTVR----TYTVIIFALCQLGRKTEALNMFKEMTEKHCQPNVHTYTVL 350

Query: 335 IRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTI-ATLSVECSKALELDLAEAL-LDQISRC 392
           I ++  D    +  ++L  M +  L P   T  A +   C K L     E L L + + C
Sbjct: 351 ICSLCEDSNFDDAKKILNGMLEKGLIPSVVTYNALIDGYCKKGLSASALEILSLMESNNC 410

Query: 393 T-NPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGN 450
           + N + ++  +          +A+ +  KM  +KL+P++ TY +L      ++   +EG+
Sbjct: 411 SPNARTYNELILGFCRGKNIHKAMSLLHKMLERKLQPNVVTYNIL------IHGQCKEGD 464

Query: 451 MFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMI---RELIQYFCDSKTPL 507
           +     SA ++ ++   M  + +     +    +  L   G++   R L +   +     
Sbjct: 465 L----GSAYKLLSL---MNESGLVPDEWTYSVFIDTLCKRGLVEEARSLFESLKEKGIKA 517

Query: 508 GTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALV 567
               Y+T++    +  +      +  +M + G  PN+ TYN +ID     + FK A  LV
Sbjct: 518 NEVIYSTLIDGYCKVGKVSDGRFLLDKMLSAGCVPNSITYNSLIDGYCKEKNFKEARLLV 577

Query: 568 SMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEK 627
            +M++    P   TYT LI  LL   +FD+A ++ D +   G   DV +Y   +   C  
Sbjct: 578 DIMIKRDIEPAADTYTILIDNLLKDDEFDQAHDMFDQMLSTGSHPDVFIYTAFIHAYCSH 637

Query: 628 GRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           GR+   E +I +M+   + PD          Y   G  + A   L+
Sbjct: 638 GRLKDAEVLICKMNAKGIMPDTMLYTLFIDAYGRFGSIDGAFGILK 683



 Score = 69.3 bits (168), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 118/598 (19%), Positives = 228/598 (38%), Gaps = 63/598 (10%)

Query: 107 METWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLG 166
           +  ++ M EK    N   Y +++ +LC+    ++A  ++  + E+ G+ P +  YN+ + 
Sbjct: 329 LNMFKEMTEKHCQPNVHTYTVLICSLCEDSNFDDAKKILNGMLEK-GLIPSVVTYNALID 387

Query: 167 ACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKN----LSAVHEIWEDYIKH 222
              K      A   L LM+S     N  TY EL+      KN    +S +H++ E   + 
Sbjct: 388 GYCKKGLSASALEILSLMESNNCSPNARTYNELILGFCRGKNIHKAMSLLHKMLE---RK 444

Query: 223 YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMG-----KLYINR-TSEGRLRSSR 276
              ++ +    +    +  DL SAY+ L  M    ++       ++I+     G +  +R
Sbjct: 445 LQPNVVTYNILIHGQCKEGDLGSAYKLLSLMNESGLVPDEWTYSVFIDTLCKRGLVEEAR 504

Query: 277 -LDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFI 335
            L   +    +   +V+  +  D     G+  +      L+ +M S G  P+S TY+  I
Sbjct: 505 SLFESLKEKGIKANEVIYSTLIDGYCKVGKVSDGRF---LLDKMLSAGCVPNSITYNSLI 561

Query: 336 RAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTN 394
                ++  +    ++ IM + +++P   T   L     K  E D A  + DQ +S  ++
Sbjct: 562 DGYCKEKNFKEARLLVDIMIKRDIEPAADTYTILIDNLLKDDEFDQAHDMFDQMLSTGSH 621

Query: 395 PKPF--SAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNM 451
           P  F  +AF+ A  +  + + A  +  KM  K + PD   Y L    +G           
Sbjct: 622 PDVFIYTAFIHAYCSHGRLKDAEVLICKMNAKGIMPDTMLYTLFIDAYGR---------- 671

Query: 452 FSQVDSA----KRINAIEMDMARNN----IQH----------------------SHISMK 481
           F  +D A    KR++ +  + +       I+H                      +     
Sbjct: 672 FGSIDGAFGILKRMHEVGCEPSYYTYSCLIKHLSNAKPKEVSSSSELSDLSSGVASNDFS 731

Query: 482 NLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIP 541
           N  + +  E  + +L     +        TY   +  L +      A  +F  MK  G  
Sbjct: 732 NCWRRVDYEFTL-DLFGKMAEHGCAPNANTYGKFITGLCKVGCLEVAHRLFDHMKEKGQS 790

Query: 542 PNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNL 601
           PN   YN ++ C   +  +  A   + +M+ +   P   +   L+  L D G+ ++A  +
Sbjct: 791 PNEDIYNSLLGCSCQLGLYGEAIRWLDIMIENRHLPHLDSCKLLLCGLYDEGNDEKAKRV 850

Query: 602 LDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
                     +D +++  ++    +KG  D    +   M     Q  P T   +  G+
Sbjct: 851 FCSFLQCEYNYDEMVWKVLIDGLLKKGLSDKCSDLFGIMETQGCQIHPKTYSMLIEGF 908



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 65/263 (24%), Positives = 108/263 (41%), Gaps = 25/263 (9%)

Query: 454 QVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPT-- 511
            VD+A   NAI + M       + +S  NL+        + E ++ F         PT  
Sbjct: 254 NVDAA---NAIFLSMPNKGCLRNEVSYTNLIHGFCEARRVDEALKLFSQMHEDNCWPTVR 310

Query: 512 -YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIR--CFKSASALVS 568
            Y  ++ +L +      A+ +FK+M      PN  TY ++I  CS+     F  A  +++
Sbjct: 311 TYTVIIFALCQLGRKTEALNMFKEMTEKHCQPNVHTYTVLI--CSLCEDSNFDDAKKILN 368

Query: 569 MMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
            M+  G  P  +TY ALI      G    AL +L L+       +   YN ++   C   
Sbjct: 369 GMLEKGLIPSVVTYNALIDGYCKKGLSASALEILSLMESNNCSPNARTYNELILGFCRGK 428

Query: 629 RIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS------------ 676
            I     ++ +M + K+QP+  T + +  G    G   SA + L +++            
Sbjct: 429 NIHKAMSLLHKMLERKLQPNVVTYNILIHGQCKEGDLGSAYKLLSLMNESGLVPDEWTYS 488

Query: 677 --MRMLCEEVSTLEEKRSDFEDL 697
             +  LC+    +EE RS FE L
Sbjct: 489 VFIDTLCKR-GLVEEARSLFESL 510



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 70/283 (24%), Positives = 111/283 (39%), Gaps = 30/283 (10%)

Query: 407 TMDKPERAIKIFAKMRQ--------KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSA 458
           + D  E A+ +   +R         K +  +R Y +L  L             F  +D  
Sbjct: 139 STDSSENALFVLEMLRSMNRRVDAFKFKLTLRCYNMLLMLLSR----------FLMIDEM 188

Query: 459 KRINAIEM--DMARNNIQHSHISMKNLLKALG----AEGMIRELIQYFCDSKTPLGTPTY 512
           K +  +EM  DM   NI  +  +M N    LG    AE  + +++Q    +   L T TY
Sbjct: 189 KSV-YLEMLDDMVTPNI-FTLNTMVNGYCKLGNVVEAELYVSKIVQ----AGLSLDTFTY 242

Query: 513 NTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVR 572
            +++      +    A  IF  M   G   N  +Y  +I      R    A  L S M  
Sbjct: 243 TSLILGYCRNKNVDAANAIFLSMPNKGCLRNEVSYTNLIHGFCEARRVDEALKLFSQMHE 302

Query: 573 DGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDV 632
           D  +P   TYT +I  L   G   EALN+   ++ +    +V  Y  ++   CE    D 
Sbjct: 303 DNCWPTVRTYTVIIFALCQLGRKTEALNMFKEMTEKHCQPNVHTYTVLICSLCEDSNFDD 362

Query: 633 IEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
            + I+  M +  + P   T + +  GY   G   SA+E L ++
Sbjct: 363 AKKILNGMLEKGLIPSVVTYNALIDGYCKKGLSASALEILSLM 405


>gi|8843735|dbj|BAA97283.1| unnamed protein product [Arabidopsis thaliana]
          Length = 1274

 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 122/577 (21%), Positives = 232/577 (40%), Gaps = 55/577 (9%)

Query: 106 VMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFL 165
           +M T+R+        N   Y ++++   + G ++++  +   +G  YG  P +   N+ L
Sbjct: 112 LMTTYRLCNS-----NPSVYDILIRVYLREGMIQDSLEIFRLMG-LYGFNPSVYTCNAIL 165

Query: 166 GACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH-YS 224
           G+  K    V     L  M  R +  +  T+  L+ +   + +      + +   K  Y+
Sbjct: 166 GSVVKSGEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYA 225

Query: 225 LSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYI-----------NRTSEGRL- 272
            +I +    +  + +    K+A E L HM +  +   +             NR ++G L 
Sbjct: 226 PTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLL 285

Query: 273 -RSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTY 331
            R  R  +  P            +++ +I+         +A QL+ +M S GL P+  T+
Sbjct: 286 LRDMRKRMIHPNEV---------TYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTF 336

Query: 332 DGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR 391
           +  I   +S+   +  +++  +M+   L P + +   L     K  E DLA     ++ R
Sbjct: 337 NALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKR 396

Query: 392 ---CTNPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYE 447
              C     ++  +         + A+ +  +M +  + PDI TY  L            
Sbjct: 397 NGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALI----------- 445

Query: 448 EGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPL 507
             N F +V   K    I   + R  +  + I    L+      G ++E I+ + ++    
Sbjct: 446 --NGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIY-EAMILE 502

Query: 508 GTP----TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSA 563
           G      T+N ++ SL +A +   A E  + M + GI PN  +++ +I+          A
Sbjct: 503 GHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKA 562

Query: 564 SALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPH--DVLLYNTIL 621
            ++   M + G +P   TY +L+K L   G   EA   L   SL  +P   D ++YNT+L
Sbjct: 563 FSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLK--SLHAVPAAVDTVMYNTLL 620

Query: 622 KKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
              C+ G +     +  +M Q  + PD  T   + SG
Sbjct: 621 TAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISG 657



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 88/184 (47%), Gaps = 3/184 (1%)

Query: 483 LLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCG 539
           L++    EGMI++ ++ F         P   T N +L S+V++ E        K+M    
Sbjct: 129 LIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRK 188

Query: 540 IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEAL 599
           I P+ AT+NI+I+       F+ +S L+  M + G+ P  +TY  ++      G F  A+
Sbjct: 189 ICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAI 248

Query: 600 NLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
            LLD +  +G+  DV  YN ++   C   RI     ++  M +  + P+  T + + +G+
Sbjct: 249 ELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGF 308

Query: 660 VNCG 663
            N G
Sbjct: 309 SNEG 312



 Score = 75.9 bits (185), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 79/373 (21%), Positives = 148/373 (39%), Gaps = 49/373 (13%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ V+H   +      A +L+  M+S G+     TY+  I  +     +  G  +L+ M
Sbjct: 230 TYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDM 289

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQI---SRCTNPKPFSAFLAACDTMDKP 411
           ++  + P + T  TL    S   ++ +A  LL+++       N   F+A +    +    
Sbjct: 290 RKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNF 349

Query: 412 ERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           + A+K+F  M  K L P   +Y +L       NA ++    F             M M R
Sbjct: 350 KEALKMFYMMEAKGLTPSEVSYGVLLDGLCK-NAEFDLARGFY------------MRMKR 396

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAME 530
           N +    I+   ++  L   G + E                                A+ 
Sbjct: 397 NGVCVGRITYTGMIDGLCKNGFLDE--------------------------------AVV 424

Query: 531 IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590
           +  +M   GI P+  TY+ +I+    +  FK+A  +V  + R G  P  + Y+ LI    
Sbjct: 425 LLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCC 484

Query: 591 DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650
             G   EA+ + + + LEG   D   +N ++   C+ G++   E  +  M  + + P+  
Sbjct: 485 RMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTV 544

Query: 651 TCHFVFSGYVNCG 663
           +   + +GY N G
Sbjct: 545 SFDCLINGYGNSG 557



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 58/259 (22%), Positives = 111/259 (42%), Gaps = 16/259 (6%)

Query: 421 MRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISM 480
           +++K+ PD+ T+ +L      +N    EG       S ++ + +   M ++    + ++ 
Sbjct: 185 LKRKICPDVATFNIL------INVLCAEG-------SFEKSSYLMQKMEKSGYAPTIVTY 231

Query: 481 KNLLKALGAEGMIR---ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKT 537
             +L     +G  +   EL+ +           TYN ++H L  +    +   + + M+ 
Sbjct: 232 NTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRK 291

Query: 538 CGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDE 597
             I PN  TYN +I+  S       AS L++ M+  G  P  +T+ ALI   +  G+F E
Sbjct: 292 RMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKE 351

Query: 598 ALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFS 657
           AL +  ++  +G+    + Y  +L   C+    D+      +M +N V     T   +  
Sbjct: 352 ALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMID 411

Query: 658 GYVNCGFHNSAMEALQVLS 676
           G    GF + A+  L  +S
Sbjct: 412 GLCKNGFLDEAVVLLNEMS 430



 Score = 66.6 bits (161), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 76/371 (20%), Positives = 155/371 (41%), Gaps = 27/371 (7%)

Query: 319 MQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL-SVECSKAL 377
           M   G  PS +T +  + ++V      +    LK M +  + P  +T   L +V C++  
Sbjct: 149 MGLYGFNPSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEG- 207

Query: 378 ELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPER---AIKIFAKMRQK-LRPDIRTYE 433
             + +  L+ ++ +         +        K  R   AI++   M+ K +  D+ TY 
Sbjct: 208 SFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYN 267

Query: 434 LLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMI 493
           +L       N    +G +  +            DM +  I  + ++   L+     EG +
Sbjct: 268 MLIHDLCRSNR-IAKGYLLLR------------DMRKRMIHPNEVTYNTLINGFSNEGKV 314

Query: 494 RELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIM 550
               Q   +  +   +P   T+N ++   +       A+++F  M+  G+ P+  +Y ++
Sbjct: 315 LIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVL 374

Query: 551 IDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGI 610
           +D       F  A      M R+G     +TYT +I  L   G  DEA+ LL+ +S +GI
Sbjct: 375 LDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGI 434

Query: 611 PHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYV-NCGFHNSAM 669
             D++ Y+ ++   C+ GR    + I+ ++++  + P+      ++S  + NC       
Sbjct: 435 DPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNG----IIYSTLIYNCCRMGCLK 490

Query: 670 EALQVLSMRML 680
           EA+++    +L
Sbjct: 491 EAIRIYEAMIL 501



 Score = 65.9 bits (159), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 119/612 (19%), Positives = 236/612 (38%), Gaps = 56/612 (9%)

Query: 93  ILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERY 152
           IL    +S + + V    + M +++I  +   + +++  LC  G  E++S L+  + E+ 
Sbjct: 164 ILGSVVKSGEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKM-EKS 222

Query: 153 GIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAV 212
           G  P +  YN+ L    K      A   LD M S+ V  +  TY  L+        ++  
Sbjct: 223 GYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKG 282

Query: 213 HEIWEDYIKH-YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAM------MGKLYIN 265
           + +  D  K     +  +    +  F+    +  A + L  M++  +         L   
Sbjct: 283 YLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDG 342

Query: 266 RTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHAC---GRTQNS--GLAEQLMLQMQ 320
             SEG  + +       L    +M+    + S+V +     G  +N+   LA    ++M+
Sbjct: 343 HISEGNFKEA-------LKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMK 395

Query: 321 SLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELD 380
             G+     TY G I  +  +  L   + +L  M ++ + P   T + L     K     
Sbjct: 396 RNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFK 455

Query: 381 LAEALLDQISRCT---NPKPFSAFLAACDTMDKPERAIKIF-AKMRQKLRPDIRTYELLF 436
            A+ ++ +I R     N   +S  +  C  M   + AI+I+ A + +    D  T+ +L 
Sbjct: 456 TAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLV 515

Query: 437 SLFGNVNAPYEEGNMFSQVDSAKRI--NAIEMDMARNNIQHSHISMK------------- 481
           +          E   F +  ++  I  N +  D   N   +S   +K             
Sbjct: 516 TSLCKA-GKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGH 574

Query: 482 --------NLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAME 530
                   +LLK L   G +RE    ++        + T  YNT+L ++ ++    +A+ 
Sbjct: 575 HPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVS 634

Query: 531 IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALV---SMMVRDGFYPQTMTYTALIK 587
           +F +M    I P++ TY  +I    + R  K+  A++       R    P  + YT  + 
Sbjct: 635 LFGEMVQRSILPDSYTYTSLIS--GLCRKGKTVIAILFAKEAEARGNVLPNKVMYTCFVD 692

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
            +   G +   +   + +   G   D++  N ++      G+I+    ++ +M      P
Sbjct: 693 GMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGP 752

Query: 648 DPSTCHFVFSGY 659
           + +T + +  GY
Sbjct: 753 NLTTYNILLHGY 764



 Score = 62.8 bits (151), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 112/564 (19%), Positives = 211/564 (37%), Gaps = 62/564 (10%)

Query: 107 METWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLG 166
           ++ + MME K +  +   Y +++  LCK    + A    Y   +R G+      Y   + 
Sbjct: 353 LKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGF-YMRMKRNGVCVGRITYTGMID 411

Query: 167 ACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELL----KLAVWQKNLSAVHEIWEDYIKH 222
              K   +  A + L+ M    +  + VTY+ L+    K+  ++     V  I+   +  
Sbjct: 412 GLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSP 471

Query: 223 YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIP 282
             + I+S    +++  R+  LK A    + M+              EG  R         
Sbjct: 472 NGI-IYS--TLIYNCCRMGCLKEAIRIYEAMIL-------------EGHTRD-------- 507

Query: 283 LNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIV-SD 341
                      ++F+ ++ +  +      AE+ M  M S G+ P++ ++D  I     S 
Sbjct: 508 ----------HFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSG 557

Query: 342 RGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ---ISRCTNPKPF 398
            GL+    V   M +    P   T  +L     K   L  AE  L     +    +   +
Sbjct: 558 EGLK-AFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMY 616

Query: 399 SAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDS 457
           +  L A        +A+ +F +M Q+ + PD  TY  L S          +G     +  
Sbjct: 617 NTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLIS------GLCRKGKTVIAILF 670

Query: 458 AKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLG-TP---TYN 513
           AK   A      R N+  + +     +  +   G  +  I YF +    LG TP   T N
Sbjct: 671 AKEAEA------RGNVLPNKVMYTCFVDGMFKAGQWKAGI-YFREQMDNLGHTPDIVTTN 723

Query: 514 TVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRD 573
            ++       +  +  ++  +M      PN  TYNI++   S  +   ++  L   ++ +
Sbjct: 724 AMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILN 783

Query: 574 GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVI 633
           G  P  +T  +L+  + +    +  L +L      G+  D   +N ++ K C  G I+  
Sbjct: 784 GILPDKLTCHSLVLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWA 843

Query: 634 EFIIEQMHQNKVQPDPSTCHFVFS 657
             +++ M    +  D  TC  + S
Sbjct: 844 FDLVKVMTSLGISLDKDTCDAMVS 867



 Score = 47.8 bits (112), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 90/487 (18%), Positives = 185/487 (37%), Gaps = 43/487 (8%)

Query: 125  YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILP--VYNSFLGACAKLHSMVHANLCLD 182
            Y  +++ LCKGG+L EA     FL   + +   +   +YN+ L A  K  ++  A     
Sbjct: 581  YGSLLKGLCKGGHLREAEK---FLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFG 637

Query: 183  LMDSRMVGKNEVTYTELLK---------LAV-WQKNLSAVHEIWEDYIKHYSLSIFSLRK 232
             M  R +  +  TYT L+          +A+ + K   A   +  + + +        + 
Sbjct: 638  EMVQRSILPDSYTYTSLISGLCRKGKTVIAILFAKEAEARGNVLPNKVMYTCFVDGMFKA 697

Query: 233  FVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIP--IPLNALPVMK 290
              W        +   + L H   +     +    +  G++  +   +P     N  P + 
Sbjct: 698  GQWKAGIY--FREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLT 755

Query: 291  VLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEV 350
                +++ ++H   + ++   +  L   +   G+ P   T    +  I     L  G+++
Sbjct: 756  ----TYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSLVLGICESNMLEIGLKI 811

Query: 351  LKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT---NPKPFSAFLAACDT 407
            LK      ++    T   L  +C    E++ A  L+  ++      +     A ++  + 
Sbjct: 812  LKAFICRGVEVDRYTFNMLISKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNR 871

Query: 408  MDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM 466
              + + +  +  +M +Q + P+ R Y       G +N          +V   K    ++ 
Sbjct: 872  NHRFQESRMVLHEMSKQGISPESRKY------IGLING-------LCRVGDIKTAFVVKE 918

Query: 467  DMARNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQ 523
            +M  + I   +++   +++AL   G   E   L+++    K      ++ T++H   +  
Sbjct: 919  EMIAHKICPPNVAESAMVRALAKCGKADEATLLLRFMLKMKLVPTIASFTTLMHLCCKNG 978

Query: 524  ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
                A+E+   M  CG+  +  +YN++I           A  L   M  DGF     TY 
Sbjct: 979  NVIEALELRVVMSNCGLKLDLVSYNVLITGLCAKGDMALAFELYEEMKGDGFLANATTYK 1038

Query: 584  ALIKILL 590
            ALI+ LL
Sbjct: 1039 ALIRGLL 1045



 Score = 47.4 bits (111), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 109/611 (17%), Positives = 220/611 (36%), Gaps = 86/611 (14%)

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
           M+   + +    Y  M+  LCK G+L+EA  L+  +  + GI P +  Y++ +    K+ 
Sbjct: 394 MKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEM-SKDGIDPDIVTYSALINGFCKVG 452

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYSLSIFSLR 231
               A   +  +    +  N + Y+ L+        L     I+E  I + ++   F+  
Sbjct: 453 RFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFN 512

Query: 232 KFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKV 291
             V S  +   +  A E ++ M             TS+G L ++                
Sbjct: 513 VLVTSLCKAGKVAEAEEFMRCM-------------TSDGILPNT---------------- 543

Query: 292 LRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVL 351
              SF  +I+  G +     A  +  +M  +G  P+  TY   ++ +     LR   + L
Sbjct: 544 --VSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFL 601

Query: 352 KIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPKPFSAFLAACDTMDK 410
           K +             TL     K+  L  A +L  + + R   P  ++          K
Sbjct: 602 KSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRK 661

Query: 411 PERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
            +  I I      + R ++   +++++ F  V+  ++ G   + +   ++++        
Sbjct: 662 GKTVIAILFAKEAEARGNVLPNKVMYTCF--VDGMFKAGQWKAGIYFREQMD-------- 711

Query: 471 NNIQHSH--ISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQES 525
            N+ H+   ++   ++      G I +      +     G P   TYN +LH   + ++ 
Sbjct: 712 -NLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDV 770

Query: 526 HRAMEIFKQMKTCGIPPNAAT-----------------------------------YNIM 550
             +  +++ +   GI P+  T                                   +N++
Sbjct: 771 STSFLLYRSIILNGILPDKLTCHSLVLGICESNMLEIGLKILKAFICRGVEVDRYTFNML 830

Query: 551 IDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGI 610
           I  C        A  LV +M   G      T  A++ +L     F E+  +L  +S +GI
Sbjct: 831 ISKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQESRMVLHEMSKQGI 890

Query: 611 PHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAME 670
             +   Y  ++   C  G I     + E+M  +K+ P       +      CG  + A  
Sbjct: 891 SPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRALAKCGKADEATL 950

Query: 671 ALQ-VLSMRML 680
            L+ +L M+++
Sbjct: 951 LLRFMLKMKLV 961



 Score = 41.6 bits (96), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 73/152 (48%), Gaps = 10/152 (6%)

Query: 512  YNTVLHSLVEAQESHRAMEIFKQM---KTCGIPPNAATYNIMIDCCSIIRCFKS--ASAL 566
            Y  +++ L    +   A  + ++M   K C  PPN A  + M+   ++ +C K+  A+ L
Sbjct: 897  YIGLINGLCRVGDIKTAFVVKEEMIAHKIC--PPNVAE-SAMVR--ALAKCGKADEATLL 951

Query: 567  VSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE 626
            +  M++    P   ++T L+ +    G+  EAL L  ++S  G+  D++ YN ++   C 
Sbjct: 952  LRFMLKMKLVPTIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYNVLITGLCA 1011

Query: 627  KGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
            KG + +   + E+M  +    + +T   +  G
Sbjct: 1012 KGDMALAFELYEEMKGDGFLANATTYKALIRG 1043


>gi|224130790|ref|XP_002328377.1| predicted protein [Populus trichocarpa]
 gi|222838092|gb|EEE76457.1| predicted protein [Populus trichocarpa]
          Length = 688

 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 88/399 (22%), Positives = 170/399 (42%), Gaps = 20/399 (5%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +F+ +I+         +A +L  +M   G +P   +Y+  I  + +       + V K M
Sbjct: 165 TFTTLINGVCNEGKIKVAVELYNEMVRSGHEPDVISYNTLINGLCNSGNTNMAVHVFKKM 224

Query: 355 QQNNLKPQDSTIATL-SVECSKALELDLAEALLDQISRCTNPKP--FSAFLAACDTMDKP 411
           +QN  KP   T  T+    C   L  D  + L + + R   P    +++ +     + + 
Sbjct: 225 EQNGCKPNVVTYNTIIDSLCKDRLVNDAMDFLSEMVGRGIPPDAITYNSIVHGLCCLGQL 284

Query: 412 ERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
             A ++F +M Q   +PD+ TY ++      +++ Y++  +    D          +M  
Sbjct: 285 NEATRLFKRMEQNGCKPDVVTYNII------IDSLYKDRLVNDAADFLS-------EMVD 331

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHR 527
             I    ++   +L  L   G + E I+ F   +     P    YNT++ SL + +  + 
Sbjct: 332 QGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVND 391

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           AME   +M   GIPPNA TY+ ++     +     A+ L   MV     P T+T++ L+ 
Sbjct: 392 AMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEATQLFKEMVGRNVMPNTLTFSILVD 451

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
            L   G   EA  + + ++ +G+  ++  YN ++   C + +++    + E M      P
Sbjct: 452 GLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMNEARKVFEIMVGKGCAP 511

Query: 648 DPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           D  + + + +GY N    + A   L  +S++ L     T
Sbjct: 512 DLHSYNILINGYCNSRRMDKAKALLTQMSVKKLTPNTVT 550



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 76/317 (23%), Positives = 134/317 (42%), Gaps = 30/317 (9%)

Query: 374 SKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDKPERAIKIFAKMRQKLRPDI 429
           S  + +D A A   +++R  NP+P    F  FL +   M +    + +  +M        
Sbjct: 69  SNTISVDDALASFYRMAR-MNPRPSIVEFGKFLGSIAKMKQYSTVVYLCNQM-------- 119

Query: 430 RTYELLFSLFGNVNAPYEEG---NMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKA 486
                   LFG  +  Y      N   +++      ++   M +  IQ   I+   L+  
Sbjct: 120 -------DLFGVTHTVYSLNILINCLCRLNHVDFAVSVWGKMFKLGIQPDVITFTTLING 172

Query: 487 LGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPN 543
           +  EG I+  ++ + +       P   +YNT+++ L  +  ++ A+ +FK+M+  G  PN
Sbjct: 173 VCNEGKIKVAVELYNEMVRSGHEPDVISYNTLINGLCNSGNTNMAVHVFKKMEQNGCKPN 232

Query: 544 AATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLD 603
             TYN +ID     R    A   +S MV  G  P  +TY +++  L   G  +EA  L  
Sbjct: 233 VVTYNTIIDSLCKDRLVNDAMDFLSEMVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFK 292

Query: 604 LVSLEGIPHDVLLYNTILKKACEKGRI--DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVN 661
            +   G   DV+ YN I+  +  K R+  D  +F+ E + Q  + PD  T   +  G   
Sbjct: 293 RMEQNGCKPDVVTYNIII-DSLYKDRLVNDAADFLSEMVDQG-IPPDVVTYTTILHGLCY 350

Query: 662 CGFHNSAMEALQVLSMR 678
            G  N A+   + +  +
Sbjct: 351 LGQLNEAIRLFKKMEQK 367



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 90/432 (20%), Positives = 160/432 (37%), Gaps = 68/432 (15%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A   + +M   G+ P + TY+  +  +     L     + K M+QN  KP   T   +  
Sbjct: 252 AMDFLSEMVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIID 311

Query: 372 ECSK-ALELDLAEALLDQISRCTNPK--PFSAFLAACDTMDKPERAIKIFAKMRQK-LRP 427
              K  L  D A+ L + + +   P    ++  L     + +   AI++F KM QK  +P
Sbjct: 312 SLYKDRLVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKP 371

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQ-VDSAKRINAIEM-------------------- 466
           D+  Y  +           +     S+ VD     NA+                      
Sbjct: 372 DVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEATQLF 431

Query: 467 -DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP--------------- 510
            +M   N+  + ++   L+  L  EGM+ E    F ++ T  G                 
Sbjct: 432 KEMVGRNVMPNTLTFSILVDGLCQEGMVSEARWVF-ETMTEKGVEPNIYTYNALMNGYCL 490

Query: 511 ------------------------TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAAT 546
                                   +YN +++    ++   +A  +  QM    + PN  T
Sbjct: 491 RCKMNEARKVFEIMVGKGCAPDLHSYNILINGYCNSRRMDKAKALLTQMSVKKLTPNTVT 550

Query: 547 YN-IMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLV 605
           YN IM   C + R    A  L   M   G  P  MTY+ L+  L  +G  DEAL L   +
Sbjct: 551 YNTIMKGLCYVGRLL-DAQELFKKMCSSGMLPTLMTYSILLNGLCKHGHLDEALKLFKSM 609

Query: 606 SLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFH 665
             + +  D++LY  +++     G+++V + +  ++  + +QP   T + +  G +  G  
Sbjct: 610 KEKKLEPDIILYTILIEGMFIGGKLEVAKGLFSKLSADGIQPPGRTYNVMIKGLLKEGLS 669

Query: 666 NSAMEALQVLSM 677
           + A E  +   M
Sbjct: 670 DEAYELFRKWKM 681


>gi|354726093|emb|CCD31439.1| RNA processing factor 3 [Arabidopsis thaliana]
          Length = 629

 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 88/367 (23%), Positives = 169/367 (46%), Gaps = 23/367 (6%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           ++  V++   +  +  LA  L+ +M+   ++     Y+  I  +   + + +   +   M
Sbjct: 222 TYGAVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHIDDAFALFNKM 281

Query: 355 QQNNLKPQDSTIATL-SVECSKALELDLAEALLDQISRCTNPK--PFSAFLAACDTMDKP 411
           +   ++P   T  +L S  C+     D +  L + I R  NP    FSA + A     K 
Sbjct: 282 ETKGIRPDVFTYNSLISCLCNYGRWSDASRLLSNMIERKINPNVVTFSALIDAFVKEGKL 341

Query: 412 ERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
             A K++ +M ++ + PDI TY  L + F           M  ++D AK +   E+ +++
Sbjct: 342 VEAEKLYDEMIKRSIDPDIFTYSSLINGF----------CMHDRLDEAKHM--FELMISK 389

Query: 471 N---NIQHSHISMKNLLKALGAE-GMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESH 526
           +   N+   +  +K   KA   E GM  EL +          T TYNT++  L +A +  
Sbjct: 390 DCFPNVVTYNTLIKGFCKAKRVEEGM--ELFREMSQRGLVGNTVTYNTLIQGLFQAGDCD 447

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
            A +IFK+M + G+PP+  TY+I++D        + A  +   + +    P   TY  +I
Sbjct: 448 MAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMI 507

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
           + +   G  ++  +L   +SL+G+  +V++Y T++   C KG  +  + +  +M ++   
Sbjct: 508 EGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTL 567

Query: 647 PDPSTCH 653
           PD S C+
Sbjct: 568 PD-SGCY 573



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 99/444 (22%), Positives = 183/444 (41%), Gaps = 23/444 (5%)

Query: 276 RLDIPIPLNALPVMKVLRW-----SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHT 330
           R  +P+ L  L  M  L +     + S +++    ++    A  L+ QM  +G +P + T
Sbjct: 128 RSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTVT 187

Query: 331 YDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQIS 390
           ++  I  +         + ++  M Q   +P   T   +     K  ++DLA +LL ++ 
Sbjct: 188 FNTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLALSLLKKME 247

Query: 391 RCTNPKPFSAFLAACDTMDK---PERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPY 446
           +         +    D + K    + A  +F KM  K +RPD+ TY  L S   N     
Sbjct: 248 KGKIEADVVIYNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLISCLCNYGRWS 307

Query: 447 EEGNMFSQVDSAKRINAIEMDMARNNIQHSHI--SMKNLLKALGAEGMIRELIQYFCDSK 504
           +   + S        N IE  +  N +  S +  +     K + AE +  E+I+   D  
Sbjct: 308 DASRLLS--------NMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPD 359

Query: 505 TPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSAS 564
                 TY+++++          A  +F+ M +    PN  TYN +I      +  +   
Sbjct: 360 IF----TYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGM 415

Query: 565 ALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKA 624
            L   M + G    T+TY  LI+ L   GD D A  +   +  +G+P D++ Y+ +L   
Sbjct: 416 ELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGL 475

Query: 625 CEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEV 684
           C+ G+++    + E + ++K++PD  T + +  G    G      +    LS++ +   V
Sbjct: 476 CKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNV 535

Query: 685 STLEEKRSDFEDLILAEDSEAESR 708
                  S F    L E+++A  R
Sbjct: 536 IIYTTMISGFCRKGLKEEADALFR 559



 Score = 62.8 bits (151), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 72/148 (48%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           +YN +++      +   A+ +  +M   G  P+  T + +++     +    A ALV  M
Sbjct: 117 SYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQM 176

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           V  G+ P T+T+  LI  L  +    EA+ L+D +   G   D++ Y  ++   C++G I
Sbjct: 177 VEMGYKPDTVTFNTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDI 236

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
           D+   ++++M + K++ D    + +  G
Sbjct: 237 DLALSLLKKMEKGKIEADVVIYNTIIDG 264



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 81/433 (18%), Positives = 175/433 (40%), Gaps = 47/433 (10%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y  ++  LCK G ++ A +L+  + E+  I   + +YN+ +    K   +  A    + M
Sbjct: 223 YGAVVNGLCKRGDIDLALSLLKKM-EKGKIEADVVIYNTIIDGLCKYKHIDDAFALFNKM 281

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYSLSIFSLRKFVWSFTRLRDL 243
           +++ +  +  TY  L+         S    +  + I +  + ++ +    + +F +   L
Sbjct: 282 ETKGIRPDVFTYNSLISCLCNYGRWSDASRLLSNMIERKINPNVVTFSALIDAFVKEGKL 341

Query: 244 KSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHAC 303
             A +    M+                  RS   DI              +++S +I+  
Sbjct: 342 VEAEKLYDEMIK-----------------RSIDPDI--------------FTYSSLINGF 370

Query: 304 GRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQD 363
                   A+ +   M S    P+  TY+  I+     + +  GME+ + M Q  L    
Sbjct: 371 CMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNT 430

Query: 364 STIATLSVECSKALELDLAEALLDQISRCTNPK---PFSAFLAACDTMDKPERAIKIFAK 420
            T  TL     +A + D+A+ +  ++     P     +S  L       K E+A+ +F  
Sbjct: 431 VTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEY 490

Query: 421 MRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHIS 479
           +++ K+ PDI TY ++           +  ++F  +     +  ++ ++       S   
Sbjct: 491 LQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLS----LKGVKPNVIIYTTMISGFC 546

Query: 480 MKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCG 539
            K L +   A+ + RE+ +   D   P  +  YNT++ + +   +   + E+ K+M++CG
Sbjct: 547 RKGLKEE--ADALFREMKE---DGTLP-DSGCYNTLIRARLRDGDKAASAELIKEMRSCG 600

Query: 540 IPPNAATYNIMID 552
              +A+T +++I+
Sbjct: 601 FVGDASTISMVIN 613



 Score = 47.8 bits (112), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 55/278 (19%), Positives = 117/278 (42%), Gaps = 14/278 (5%)

Query: 93  ILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERY 152
           ++N   +  D    +   + ME+ +I  +   Y  ++  LCK  ++++A  L   + E  
Sbjct: 226 VVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHIDDAFALFNKM-ETK 284

Query: 153 GIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAV 212
           GI P +  YNS +           A+  L  M  R +  N VT++ L+   V +  L   
Sbjct: 285 GIRPDVFTYNSLISCLCNYGRWSDASRLLSNMIERKINPNVVTFSALIDAFVKEGKLVEA 344

Query: 213 HEIWEDYIKH-YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTS--- 268
            +++++ IK      IF+    +  F     L  A    +HM  L +    + N  +   
Sbjct: 345 EKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEA----KHMFELMISKDCFPNVVTYNT 400

Query: 269 --EGRLRSSRLDIPIPLNALPVMKVL---RWSFSDVIHACGRTQNSGLAEQLMLQMQSLG 323
             +G  ++ R++  + L      + L     +++ +I    +  +  +A+++  +M S G
Sbjct: 401 LIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDG 460

Query: 324 LQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKP 361
           + P   TY   +  +     L   + V + +Q++ ++P
Sbjct: 461 VPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEP 498


>gi|302762244|ref|XP_002964544.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
 gi|300168273|gb|EFJ34877.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
          Length = 528

 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 113/496 (22%), Positives = 196/496 (39%), Gaps = 40/496 (8%)

Query: 194 VTYTELL-KLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQH 252
           +TYT+L+  L+  ++   AV  + E     +     +L   V S      +  A E ++ 
Sbjct: 40  LTYTKLVHGLSKARRLRDAVQVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEE 99

Query: 253 MVALAMMGK-LYINRTSEGRLRSSRLDIPIPL-------NALPVMKVLRWSFSDVIHACG 304
           M+   M    +  +   +G  +  RLD  + L          P +     +++ +I    
Sbjct: 100 MLHRGMAANAITYSALVDGLCKCERLDEAVALVETMAERGCAPTV----VTYNSIITGFC 155

Query: 305 RTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDS 364
           R +    A   M QM + G  P   TY   I      R +  G+E+L  + +    P   
Sbjct: 156 RARRVDEAHGFMEQMVAEGCHPDIITYTALIGGFCKSRDVGRGLELLGEVTRRGFTPDIV 215

Query: 365 TIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAA-CDTMDKPERAIKIFAKM-R 422
           T +T+     KA  L  A  + +++S       +++ +   C   D  E AI++  KM  
Sbjct: 216 TYSTVIDGLCKAGRLRDAVDIFEEMSCAPTAITYNSLIGGYCRAGDMDE-AIRLLGKMVD 274

Query: 423 QKLRPDIRTYELLFSLF---GNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHIS 479
            K  PD+ TY  L S F   G ++  YE   +F Q             M  N +    ++
Sbjct: 275 DKCAPDVVTYTTLMSAFCKMGRLDDAYE---LFQQ-------------MVANKLSPDVVT 318

Query: 480 MKNLLKALGAEGMIR---ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMK 536
             +L+  L  EG +    EL++       P    TYN V+    +A +  +A E+    +
Sbjct: 319 FTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKANQVRKAEELVADFR 378

Query: 537 TCGIPPNAATYNIMI-DCCSIIRCFKSASALVSMMVRDGFYPQTMT-YTALIKILLDYGD 594
           + G  PN  TYNI++  CC   R  ++   L  +    G  P ++  Y  ++  L   G 
Sbjct: 379 SRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGR 438

Query: 595 FDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHF 654
            D+A+   + +   G       + T++   C+  +      ++E+M +    P P TC  
Sbjct: 439 TDDAVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQAHELLEEMIKYGHTPGPGTCDA 498

Query: 655 VFSGYVNCGFHNSAME 670
           V S Y   G    A E
Sbjct: 499 VVSAYCRAGMIQKADE 514



 Score = 76.6 bits (187), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 77/358 (21%), Positives = 145/358 (40%), Gaps = 54/358 (15%)

Query: 326 PSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEAL 385
           P   TY   +  +   R LR+ ++VL+ M      P ++T+  +         +D A  L
Sbjct: 37  PDFLTYTKLVHGLSKARRLRDAVQVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDAREL 96

Query: 386 LDQI---SRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGN 441
           ++++       N   +SA +      ++ + A+ +   M ++   P + TY  + + F  
Sbjct: 97  VEEMLHRGMAANAITYSALVDGLCKCERLDEAVALVETMAERGCAPTVVTYNSIITGFCR 156

Query: 442 VNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFC 501
                           A+R++             +H  M+ ++    AEG   ++I    
Sbjct: 157 ----------------ARRVD------------EAHGFMEQMV----AEGCHPDII---- 180

Query: 502 DSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID-CCSIIRCF 560
                    TY  ++    ++++  R +E+  ++   G  P+  TY+ +ID  C   R  
Sbjct: 181 ---------TYTALIGGFCKSRDVGRGLELLGEVTRRGFTPDIVTYSTVIDGLCKAGRLR 231

Query: 561 KSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTI 620
            +      M       P  +TY +LI      GD DEA+ LL  +  +    DV+ Y T+
Sbjct: 232 DAVDIFEEMSCA----PTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTL 287

Query: 621 LKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678
           +   C+ GR+D    + +QM  NK+ PD  T   +  G    G    A+E L+ ++ R
Sbjct: 288 MSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRR 345



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 78/176 (44%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TY  ++H L +A+    A+++ ++M +    P+  T  +++    +      A  LV  M
Sbjct: 41  TYTKLVHGLSKARRLRDAVQVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEM 100

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           +  G     +TY+AL+  L      DEA+ L++ ++  G    V+ YN+I+   C   R+
Sbjct: 101 LHRGMAANAITYSALVDGLCKCERLDEAVALVETMAERGCAPTVVTYNSIITGFCRARRV 160

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           D     +EQM      PD  T   +  G+         +E L  ++ R    ++ T
Sbjct: 161 DEAHGFMEQMVAEGCHPDIITYTALIGGFCKSRDVGRGLELLGEVTRRGFTPDIVT 216



 Score = 59.7 bits (143), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 75/177 (42%), Gaps = 3/177 (1%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TYN+++     A+    A    +QM   G  P+  TY  +I      R       L+  +
Sbjct: 146 TYNSIITGFCRARRVDEAHGFMEQMVAEGCHPDIITYTALIGGFCKSRDVGRGLELLGEV 205

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
            R GF P  +TY+ +I  L   G   +A+++ + +S        + YN+++   C  G +
Sbjct: 206 TRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMS---CAPTAITYNSLIGGYCRAGDM 262

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTL 687
           D    ++ +M  +K  PD  T   + S +   G  + A E  Q +    L  +V T 
Sbjct: 263 DEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTF 319



 Score = 48.9 bits (115), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 85/426 (19%), Positives = 140/426 (32%), Gaps = 96/426 (22%)

Query: 10  FQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERS 69
           +  + D  CK +           +L+ +  L  TM     + +  T   I+   CR  R 
Sbjct: 112 YSALVDGLCKCE-----------RLDEAVALVETMAERGCAPTVVTYNSIITGFCRARRV 160

Query: 70  RASHLLLNLGHAHHSLGADDFFHILNYCA------RSPDPLFVMETWRMMEEKEIGLNNK 123
             +H     G     +       I+ Y A      +S D    +E    +  +    +  
Sbjct: 161 DEAH-----GFMEQMVAEGCHPDIITYTALIGGFCKSRDVGRGLELLGEVTRRGFTPDIV 215

Query: 124 CYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDL 183
            Y  ++  LCK G L +A ++     E     P    YNS +G   +   M  A   L  
Sbjct: 216 TYSTVIDGLCKAGRLRDAVDIF----EEMSCAPTAITYNSLIGGYCRAGDMDEAIRLLGK 271

Query: 184 MDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDL 243
           M       + VTYT L+                                   +F ++  L
Sbjct: 272 MVDDKCAPDVVTYTTLMS----------------------------------AFCKMGRL 297

Query: 244 KSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHAC 303
             AYE  Q MVA                            N L    V   S  D +   
Sbjct: 298 DDAYELFQQMVA----------------------------NKLSPDVVTFTSLVDGLCGE 329

Query: 304 GRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQD 363
           GR ++   A +L+ ++   G  P+ +TY+  +        +R   E++   +     P  
Sbjct: 330 GRMED---ALELLEEITRRGCPPTIYTYNCVVDGYCKANQVRKAEELVADFRSRGFVPNT 386

Query: 364 STIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAAC--DTMDKPER---AIKIF 418
            T   L   C +A   D A   LDQ++    P P S  + A   D + +  R   A++ +
Sbjct: 387 VTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFY 446

Query: 419 AKMRQK 424
            +M Q+
Sbjct: 447 EEMIQR 452


>gi|223635748|sp|Q9LVQ5.2|PP432_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g55840
          Length = 1096

 Score = 99.4 bits (246), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 122/577 (21%), Positives = 232/577 (40%), Gaps = 55/577 (9%)

Query: 106 VMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFL 165
           +M T+R+        N   Y ++++   + G ++++  +   +G  YG  P +   N+ L
Sbjct: 112 LMTTYRLCNS-----NPSVYDILIRVYLREGMIQDSLEIFRLMG-LYGFNPSVYTCNAIL 165

Query: 166 GACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH-YS 224
           G+  K    V     L  M  R +  +  T+  L+ +   + +      + +   K  Y+
Sbjct: 166 GSVVKSGEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYA 225

Query: 225 LSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYI-----------NRTSEGRL- 272
            +I +    +  + +    K+A E L HM +  +   +             NR ++G L 
Sbjct: 226 PTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLL 285

Query: 273 -RSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTY 331
            R  R  +  P            +++ +I+         +A QL+ +M S GL P+  T+
Sbjct: 286 LRDMRKRMIHPNEV---------TYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTF 336

Query: 332 DGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR 391
           +  I   +S+   +  +++  +M+   L P + +   L     K  E DLA     ++ R
Sbjct: 337 NALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKR 396

Query: 392 ---CTNPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYE 447
              C     ++  +         + A+ +  +M +  + PDI TY  L            
Sbjct: 397 NGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALI----------- 445

Query: 448 EGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPL 507
             N F +V   K    I   + R  +  + I    L+      G ++E I+ + ++    
Sbjct: 446 --NGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIY-EAMILE 502

Query: 508 GTP----TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSA 563
           G      T+N ++ SL +A +   A E  + M + GI PN  +++ +I+          A
Sbjct: 503 GHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKA 562

Query: 564 SALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPH--DVLLYNTIL 621
            ++   M + G +P   TY +L+K L   G   EA   L   SL  +P   D ++YNT+L
Sbjct: 563 FSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLK--SLHAVPAAVDTVMYNTLL 620

Query: 622 KKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
              C+ G +     +  +M Q  + PD  T   + SG
Sbjct: 621 TAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISG 657



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 88/184 (47%), Gaps = 3/184 (1%)

Query: 483 LLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCG 539
           L++    EGMI++ ++ F         P   T N +L S+V++ E        K+M    
Sbjct: 129 LIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRK 188

Query: 540 IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEAL 599
           I P+ AT+NI+I+       F+ +S L+  M + G+ P  +TY  ++      G F  A+
Sbjct: 189 ICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAI 248

Query: 600 NLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
            LLD +  +G+  DV  YN ++   C   RI     ++  M +  + P+  T + + +G+
Sbjct: 249 ELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGF 308

Query: 660 VNCG 663
            N G
Sbjct: 309 SNEG 312



 Score = 75.5 bits (184), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 79/373 (21%), Positives = 148/373 (39%), Gaps = 49/373 (13%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ V+H   +      A +L+  M+S G+     TY+  I  +     +  G  +L+ M
Sbjct: 230 TYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDM 289

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQI---SRCTNPKPFSAFLAACDTMDKP 411
           ++  + P + T  TL    S   ++ +A  LL+++       N   F+A +    +    
Sbjct: 290 RKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNF 349

Query: 412 ERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           + A+K+F  M  K L P   +Y +L       NA ++    F             M M R
Sbjct: 350 KEALKMFYMMEAKGLTPSEVSYGVLLDGLCK-NAEFDLARGFY------------MRMKR 396

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAME 530
           N +    I+   ++  L   G + E                                A+ 
Sbjct: 397 NGVCVGRITYTGMIDGLCKNGFLDE--------------------------------AVV 424

Query: 531 IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590
           +  +M   GI P+  TY+ +I+    +  FK+A  +V  + R G  P  + Y+ LI    
Sbjct: 425 LLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCC 484

Query: 591 DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650
             G   EA+ + + + LEG   D   +N ++   C+ G++   E  +  M  + + P+  
Sbjct: 485 RMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTV 544

Query: 651 TCHFVFSGYVNCG 663
           +   + +GY N G
Sbjct: 545 SFDCLINGYGNSG 557



 Score = 67.0 bits (162), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 58/259 (22%), Positives = 111/259 (42%), Gaps = 16/259 (6%)

Query: 421 MRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISM 480
           +++K+ PD+ T+ +L      +N    EG       S ++ + +   M ++    + ++ 
Sbjct: 185 LKRKICPDVATFNIL------INVLCAEG-------SFEKSSYLMQKMEKSGYAPTIVTY 231

Query: 481 KNLLKALGAEGMIR---ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKT 537
             +L     +G  +   EL+ +           TYN ++H L  +    +   + + M+ 
Sbjct: 232 NTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRK 291

Query: 538 CGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDE 597
             I PN  TYN +I+  S       AS L++ M+  G  P  +T+ ALI   +  G+F E
Sbjct: 292 RMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKE 351

Query: 598 ALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFS 657
           AL +  ++  +G+    + Y  +L   C+    D+      +M +N V     T   +  
Sbjct: 352 ALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMID 411

Query: 658 GYVNCGFHNSAMEALQVLS 676
           G    GF + A+  L  +S
Sbjct: 412 GLCKNGFLDEAVVLLNEMS 430



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 119/612 (19%), Positives = 236/612 (38%), Gaps = 56/612 (9%)

Query: 93  ILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERY 152
           IL    +S + + V    + M +++I  +   + +++  LC  G  E++S L+  + E+ 
Sbjct: 164 ILGSVVKSGEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKM-EKS 222

Query: 153 GIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAV 212
           G  P +  YN+ L    K      A   LD M S+ V  +  TY  L+        ++  
Sbjct: 223 GYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKG 282

Query: 213 HEIWEDYIKH-YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAM------MGKLYIN 265
           + +  D  K     +  +    +  F+    +  A + L  M++  +         L   
Sbjct: 283 YLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDG 342

Query: 266 RTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHAC---GRTQNS--GLAEQLMLQMQ 320
             SEG  + +       L    +M+    + S+V +     G  +N+   LA    ++M+
Sbjct: 343 HISEGNFKEA-------LKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMK 395

Query: 321 SLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELD 380
             G+     TY G I  +  +  L   + +L  M ++ + P   T + L     K     
Sbjct: 396 RNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFK 455

Query: 381 LAEALLDQISRCT---NPKPFSAFLAACDTMDKPERAIKIF-AKMRQKLRPDIRTYELLF 436
            A+ ++ +I R     N   +S  +  C  M   + AI+I+ A + +    D  T+ +L 
Sbjct: 456 TAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLV 515

Query: 437 SLFGNVNAPYEEGNMFSQVDSAKRI--NAIEMDMARNNIQHSHISMK------------- 481
           +          E   F +  ++  I  N +  D   N   +S   +K             
Sbjct: 516 TSLCKA-GKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGH 574

Query: 482 --------NLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAME 530
                   +LLK L   G +RE    ++        + T  YNT+L ++ ++    +A+ 
Sbjct: 575 HPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVS 634

Query: 531 IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALV---SMMVRDGFYPQTMTYTALIK 587
           +F +M    I P++ TY  +I    + R  K+  A++       R    P  + YT  + 
Sbjct: 635 LFGEMVQRSILPDSYTYTSLIS--GLCRKGKTVIAILFAKEAEARGNVLPNKVMYTCFVD 692

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
            +   G +   +   + +   G   D++  N ++      G+I+    ++ +M      P
Sbjct: 693 GMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGP 752

Query: 648 DPSTCHFVFSGY 659
           + +T + +  GY
Sbjct: 753 NLTTYNILLHGY 764



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 112/564 (19%), Positives = 211/564 (37%), Gaps = 62/564 (10%)

Query: 107 METWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLG 166
           ++ + MME K +  +   Y +++  LCK    + A    Y   +R G+      Y   + 
Sbjct: 353 LKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGF-YMRMKRNGVCVGRITYTGMID 411

Query: 167 ACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELL----KLAVWQKNLSAVHEIWEDYIKH 222
              K   +  A + L+ M    +  + VTY+ L+    K+  ++     V  I+   +  
Sbjct: 412 GLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSP 471

Query: 223 YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIP 282
             + I+S    +++  R+  LK A    + M+              EG  R         
Sbjct: 472 NGI-IYS--TLIYNCCRMGCLKEAIRIYEAMIL-------------EGHTRD-------- 507

Query: 283 LNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIV-SD 341
                      ++F+ ++ +  +      AE+ M  M S G+ P++ ++D  I     S 
Sbjct: 508 ----------HFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSG 557

Query: 342 RGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ---ISRCTNPKPF 398
            GL+    V   M +    P   T  +L     K   L  AE  L     +    +   +
Sbjct: 558 EGLK-AFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMY 616

Query: 399 SAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDS 457
           +  L A        +A+ +F +M Q+ + PD  TY  L S          +G     +  
Sbjct: 617 NTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLIS------GLCRKGKTVIAILF 670

Query: 458 AKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLG-TP---TYN 513
           AK   A      R N+  + +     +  +   G  +  I YF +    LG TP   T N
Sbjct: 671 AKEAEA------RGNVLPNKVMYTCFVDGMFKAGQWKAGI-YFREQMDNLGHTPDIVTTN 723

Query: 514 TVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRD 573
            ++       +  +  ++  +M      PN  TYNI++   S  +   ++  L   ++ +
Sbjct: 724 AMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILN 783

Query: 574 GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVI 633
           G  P  +T  +L+  + +    +  L +L      G+  D   +N ++ K C  G I+  
Sbjct: 784 GILPDKLTCHSLVLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWA 843

Query: 634 EFIIEQMHQNKVQPDPSTCHFVFS 657
             +++ M    +  D  TC  + S
Sbjct: 844 FDLVKVMTSLGISLDKDTCDAMVS 867



 Score = 47.4 bits (111), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 90/487 (18%), Positives = 185/487 (37%), Gaps = 43/487 (8%)

Query: 125  YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILP--VYNSFLGACAKLHSMVHANLCLD 182
            Y  +++ LCKGG+L EA     FL   + +   +   +YN+ L A  K  ++  A     
Sbjct: 581  YGSLLKGLCKGGHLREAEK---FLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFG 637

Query: 183  LMDSRMVGKNEVTYTELLK---------LAV-WQKNLSAVHEIWEDYIKHYSLSIFSLRK 232
             M  R +  +  TYT L+          +A+ + K   A   +  + + +        + 
Sbjct: 638  EMVQRSILPDSYTYTSLISGLCRKGKTVIAILFAKEAEARGNVLPNKVMYTCFVDGMFKA 697

Query: 233  FVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIP--IPLNALPVMK 290
              W        +   + L H   +     +    +  G++  +   +P     N  P + 
Sbjct: 698  GQWKAGIY--FREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLT 755

Query: 291  VLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEV 350
                +++ ++H   + ++   +  L   +   G+ P   T    +  I     L  G+++
Sbjct: 756  ----TYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSLVLGICESNMLEIGLKI 811

Query: 351  LKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT---NPKPFSAFLAACDT 407
            LK      ++    T   L  +C    E++ A  L+  ++      +     A ++  + 
Sbjct: 812  LKAFICRGVEVDRYTFNMLISKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNR 871

Query: 408  MDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM 466
              + + +  +  +M +Q + P+ R Y       G +N          +V   K    ++ 
Sbjct: 872  NHRFQESRMVLHEMSKQGISPESRKY------IGLING-------LCRVGDIKTAFVVKE 918

Query: 467  DMARNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQ 523
            +M  + I   +++   +++AL   G   E   L+++    K      ++ T++H   +  
Sbjct: 919  EMIAHKICPPNVAESAMVRALAKCGKADEATLLLRFMLKMKLVPTIASFTTLMHLCCKNG 978

Query: 524  ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
                A+E+   M  CG+  +  +YN++I           A  L   M  DGF     TY 
Sbjct: 979  NVIEALELRVVMSNCGLKLDLVSYNVLITGLCAKGDMALAFELYEEMKGDGFLANATTYK 1038

Query: 584  ALIKILL 590
            ALI+ LL
Sbjct: 1039 ALIRGLL 1045



 Score = 47.0 bits (110), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 109/611 (17%), Positives = 220/611 (36%), Gaps = 86/611 (14%)

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
           M+   + +    Y  M+  LCK G+L+EA  L+  +  + GI P +  Y++ +    K+ 
Sbjct: 394 MKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEM-SKDGIDPDIVTYSALINGFCKVG 452

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYSLSIFSLR 231
               A   +  +    +  N + Y+ L+        L     I+E  I + ++   F+  
Sbjct: 453 RFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFN 512

Query: 232 KFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKV 291
             V S  +   +  A E ++ M             TS+G L ++                
Sbjct: 513 VLVTSLCKAGKVAEAEEFMRCM-------------TSDGILPNT---------------- 543

Query: 292 LRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVL 351
              SF  +I+  G +     A  +  +M  +G  P+  TY   ++ +     LR   + L
Sbjct: 544 --VSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFL 601

Query: 352 KIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPKPFSAFLAACDTMDK 410
           K +             TL     K+  L  A +L  + + R   P  ++          K
Sbjct: 602 KSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRK 661

Query: 411 PERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
            +  I I      + R ++   +++++ F  V+  ++ G   + +   ++++        
Sbjct: 662 GKTVIAILFAKEAEARGNVLPNKVMYTCF--VDGMFKAGQWKAGIYFREQMD-------- 711

Query: 471 NNIQHSH--ISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQES 525
            N+ H+   ++   ++      G I +      +     G P   TYN +LH   + ++ 
Sbjct: 712 -NLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDV 770

Query: 526 HRAMEIFKQMKTCGIPPNAAT-----------------------------------YNIM 550
             +  +++ +   GI P+  T                                   +N++
Sbjct: 771 STSFLLYRSIILNGILPDKLTCHSLVLGICESNMLEIGLKILKAFICRGVEVDRYTFNML 830

Query: 551 IDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGI 610
           I  C        A  LV +M   G      T  A++ +L     F E+  +L  +S +GI
Sbjct: 831 ISKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQESRMVLHEMSKQGI 890

Query: 611 PHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAME 670
             +   Y  ++   C  G I     + E+M  +K+ P       +      CG  + A  
Sbjct: 891 SPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRALAKCGKADEATL 950

Query: 671 ALQ-VLSMRML 680
            L+ +L M+++
Sbjct: 951 LLRFMLKMKLV 961



 Score = 41.6 bits (96), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 73/152 (48%), Gaps = 10/152 (6%)

Query: 512  YNTVLHSLVEAQESHRAMEIFKQM---KTCGIPPNAATYNIMIDCCSIIRCFKS--ASAL 566
            Y  +++ L    +   A  + ++M   K C  PPN A  + M+   ++ +C K+  A+ L
Sbjct: 897  YIGLINGLCRVGDIKTAFVVKEEMIAHKIC--PPNVAE-SAMVR--ALAKCGKADEATLL 951

Query: 567  VSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE 626
            +  M++    P   ++T L+ +    G+  EAL L  ++S  G+  D++ YN ++   C 
Sbjct: 952  LRFMLKMKLVPTIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYNVLITGLCA 1011

Query: 627  KGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
            KG + +   + E+M  +    + +T   +  G
Sbjct: 1012 KGDMALAFELYEEMKGDGFLANATTYKALIRG 1043


>gi|30794106|gb|AAP40495.1| unknown protein [Arabidopsis thaliana]
          Length = 974

 Score = 99.0 bits (245), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 124/574 (21%), Positives = 242/574 (42%), Gaps = 45/574 (7%)

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
           M+   + L+N  Y L++  L KG   + A  L++ +   +GI     +Y+  +   +K  
Sbjct: 303 MDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEM-VSHGINIKPYMYDCCICVMSKEG 361

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK-HYSLSIFSLR 231
            M  A    D M +  +      Y  L++    +KN+   +E+  +  K +  +S ++  
Sbjct: 362 VMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYG 421

Query: 232 KFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRT-SEGRLRSSRLDIPIPLNALPVMK 290
             V       DL  AY  ++ M+A      + I  T  +  L++SR       +A+ V+K
Sbjct: 422 TVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFG-----DAMRVLK 476

Query: 291 VLR--------WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDR 342
            ++        + ++ +I    + +    A   +++M   GL+P++ TY  FI   +   
Sbjct: 477 EMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEAS 536

Query: 343 GLRNGMEVLKIMQQNNLKPQDSTIATLSVE-CSKALELDLAEA---LLDQISRCTNPKPF 398
              +  + +K M++  + P       L  E C K   ++   A   ++DQ     + K +
Sbjct: 537 EFASADKYVKEMRECGVLPNKVLCTGLINEYCKKEKVIEACSAYRSMVDQ-GILGDAKTY 595

Query: 399 SAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDS 457
           +  +      DK + A +IF +MR K + PD+ +Y +L              N FS++ +
Sbjct: 596 TVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLI-------------NGFSKLGN 642

Query: 458 AKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMI---RELIQYFCDSKTPLGTPTYNT 514
            ++ ++I  +M    +  + I    LL      G I   +EL+             TY T
Sbjct: 643 MQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCT 702

Query: 515 VLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDG 574
           ++    ++ +   A  +F +MK  G+ P++  Y  ++D C  +   + A  +     + G
Sbjct: 703 IIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTN-KKG 761

Query: 575 FYPQTMTYTALIKILLDYGDFD---EALNLLDLVSLE--GIPHDVLLYNTILKKACEKGR 629
               T  + ALI  +  +G  +   E LN L   S +  G P+DV  YN ++   C++G 
Sbjct: 762 CASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDV-TYNIMIDYLCKEGN 820

Query: 630 IDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
           ++  + +  QM    + P   T   + +GY   G
Sbjct: 821 LEAAKELFHQMQNANLMPTVITYTSLLNGYDKMG 854



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 79/340 (23%), Positives = 137/340 (40%), Gaps = 36/340 (10%)

Query: 306 TQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDST 365
           T N   A +L   M   GL P  +TYD  I  +   + L +   +L  M    +   + T
Sbjct: 255 TLNVDGALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHT 314

Query: 366 IATLSVECSKALELDLAEALL-DQISRCTNPKPFSAFLAACDTMDKP---ERAIKIFAKM 421
            + L     K    D A+ L+ + +S   N KP+      C  M K    E+A  +F  M
Sbjct: 315 YSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCIC-VMSKEGVMEKAKALFDGM 373

Query: 422 -RQKLRPDIRTYELLFSLF---GNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSH 477
               L P  + Y  L   +    NV   YE                + ++M + NI  S 
Sbjct: 374 IASGLIPQAQAYASLIEGYCREKNVRQGYE----------------LLVEMKKRNIVISP 417

Query: 478 ISMKNLLKAL-------GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAME 530
            +   ++K +       GA  +++E+I   C     +    Y T++ + ++      AM 
Sbjct: 418 YTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVI----YTTLIKTFLQNSRFGDAMR 473

Query: 531 IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590
           + K+MK  GI P+   YN +I   S  +    A + +  MV +G  P   TY A I   +
Sbjct: 474 VLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYI 533

Query: 591 DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           +  +F  A   +  +   G+  + +L   ++ + C+K ++
Sbjct: 534 EASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKEKV 573



 Score = 66.2 bits (160), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 82/374 (21%), Positives = 147/374 (39%), Gaps = 51/374 (13%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A+ L   M + GL P +  Y   I     ++ +R G E+L  M++ N+     T  T+  
Sbjct: 366 AKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVK 425

Query: 372 ECSKALELDLAEALLDQI--SRC-TNPKPFSAFLAACDTMDKPERAIKIFAKMR-QKLRP 427
               + +LD A  ++ ++  S C  N   ++  +       +   A+++  +M+ Q + P
Sbjct: 426 GMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAP 485

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL 487
           DI  Y                 ++   +  AKR     MD AR+ +      ++N LK  
Sbjct: 486 DIFCYN----------------SLIIGLSKAKR-----MDEARSFLVEM---VENGLKP- 520

Query: 488 GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATY 547
                                  TY   +   +EA E   A +  K+M+ CG+ PN    
Sbjct: 521 --------------------NAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLC 560

Query: 548 NIMI-DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVS 606
             +I + C   +  ++ SA  SM V  G      TYT L+  L      D+A  +   + 
Sbjct: 561 TGLINEYCKKEKVIEACSAYRSM-VDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMR 619

Query: 607 LEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHN 666
            +GI  DV  Y  ++    + G +     I ++M +  + P+    + +  G+   G   
Sbjct: 620 GKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIE 679

Query: 667 SAMEALQVLSMRML 680
            A E L  +S++ L
Sbjct: 680 KAKELLDEMSVKGL 693



 Score = 60.1 bits (144), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/177 (23%), Positives = 75/177 (42%), Gaps = 6/177 (3%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
            Y +++      +   +  E+  +MK   I  +  TY  ++           A  +V  M
Sbjct: 384 AYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEM 443

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           +  G  P  + YT LIK  L    F +A+ +L  +  +GI  D+  YN+++    +  R+
Sbjct: 444 IASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRM 503

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSA------MEALQVLSMRMLC 681
           D     + +M +N ++P+  T     SGY+      SA      M    VL  ++LC
Sbjct: 504 DEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLC 560



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 74/362 (20%), Positives = 137/362 (37%), Gaps = 42/362 (11%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           AE++  +M+  G+ P   +Y   I        ++    +   M +  L P       L  
Sbjct: 611 AEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLG 670

Query: 372 ECSKALELDLAEALLDQIS-RCTNPKPFS---AFLAACDTMDKPERAIKIFAKMRQK-LR 426
              ++ E++ A+ LLD++S +  +P   +        C + D  E A ++F +M+ K L 
Sbjct: 671 GFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAE-AFRLFDEMKLKGLV 729

Query: 427 PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHIS------- 479
           PD   Y  L                   VD   R+N +E  +          +       
Sbjct: 730 PDSFVYTTL-------------------VDGCCRLNDVERAITIFGTNKKGCASSTAPFN 770

Query: 480 -MKNLLKALGAEGMIRELIQYFCD-SKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQ 534
            + N +   G   +  E++    D S    G P   TYN ++  L +      A E+F Q
Sbjct: 771 ALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQ 830

Query: 535 MKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGD 594
           M+   + P   TY  +++    +        +    +  G  P  + Y+ +I   L  G 
Sbjct: 831 MQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGM 890

Query: 595 FDEALNLLDLVSL-----EGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649
             +AL L+D +       +G    +     +L    + G ++V E ++E M + +  PD 
Sbjct: 891 TTKALVLVDQMFAKNAVDDGCKLSISTCRALLSGFAKVGEMEVAEKVMENMVRLQYIPDS 950

Query: 650 ST 651
           +T
Sbjct: 951 AT 952



 Score = 43.5 bits (101), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 37/177 (20%), Positives = 73/177 (41%), Gaps = 1/177 (0%)

Query: 487 LGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAAT 546
           L  +G ++      C    PL   TY+ ++  L + +    A  +  +M + G+  +  T
Sbjct: 256 LNVDGALKLKESMICKGLVPL-KYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHT 314

Query: 547 YNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVS 606
           Y+++ID     R   +A  LV  MV  G   +   Y   I ++   G  ++A  L D + 
Sbjct: 315 YSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMI 374

Query: 607 LEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
             G+      Y ++++  C +  +     ++ +M +  +   P T   V  G  + G
Sbjct: 375 ASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSG 431


>gi|168026089|ref|XP_001765565.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162683203|gb|EDQ69615.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 505

 Score = 99.0 bits (245), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 81/368 (22%), Positives = 154/368 (41%), Gaps = 17/368 (4%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           F+ +IH  G       A Q +      G +P+++TY   I+  +    ++NG+ + K M 
Sbjct: 33  FNTLIHIYGEANMMEKALQTLAAFTKEGGRPTAYTYSSMIQVFMKGGDVQNGLLMYKQML 92

Query: 356 QNNLKPQDSTIATLSVECSKALELDLA-EALLDQISRCTNPK--PFSAFLAACDTMDKPE 412
           +    P  +T   L    +KA +++ A     D      +P    ++  + +  T+ + +
Sbjct: 93  KAKFVPDHTTFNILIDSLAKADQVEEACNVFGDMFKLNVSPDVYTYTILIRSLGTIGRID 152

Query: 413 RAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471
             +K+F  M  Q  +P++ TY  +   FG+     E  ++F Q             M + 
Sbjct: 153 AVMKLFESMTAQGCQPNLFTYHSVMHAFGSAGRVDEACDIFQQ-------------MVQK 199

Query: 472 NIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEI 531
            +Q   ++   L+ A G  G +     +   S++     TYN++L SL    +    ME+
Sbjct: 200 GLQPDAVTYNILIDAFGKTGQLERAFDFVGKSRSFTNEVTYNSLLSSLGRKGDIQGLMEL 259

Query: 532 FKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLD 591
           F QMK  G+  N  TY I+I+        +    L   MV +      +T   ++  L  
Sbjct: 260 FGQMKAKGLVSNELTYAILIERLGWAGRVEDVWQLYLEMVDNDIKYDIVTINNVLDCLSK 319

Query: 592 YGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
            G  + A  L   +  +G+  D + YN ++      G++D    ++ +M +N   P+  T
Sbjct: 320 AGRVEAAFELFQDMKFKGLNADTVTYNILINGLGRAGKLDAAGALLLEMEENGCAPNIIT 379

Query: 652 CHFVFSGY 659
            + + S Y
Sbjct: 380 YNTLISSY 387



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 75/341 (21%), Positives = 143/341 (41%), Gaps = 17/341 (4%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           ++++ +I + G         +L   M + G QP+  TY   + A  S   +    ++ + 
Sbjct: 136 YTYTILIRSLGTIGRIDAVMKLFESMTAQGCQPNLFTYHSVMHAFGSAGRVDEACDIFQQ 195

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPER 413
           M Q  L+P   T   L     K  +L+ A   + +    TN   +++ L++       + 
Sbjct: 196 MVQKGLQPDAVTYNILIDAFGKTGQLERAFDFVGKSRSFTNEVTYNSLLSSLGRKGDIQG 255

Query: 414 AIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNN 472
            +++F +M+ K L  +  TY +L    G                  + +  + ++M  N+
Sbjct: 256 LMELFGQMKAKGLVSNELTYAILIERLG-------------WAGRVEDVWQLYLEMVDND 302

Query: 473 IQHSHISMKNLLKALGAEGMIRELIQYFCDSKTP---LGTPTYNTVLHSLVEAQESHRAM 529
           I++  +++ N+L  L   G +    + F D K       T TYN +++ L  A +   A 
Sbjct: 303 IKYDIVTINNVLDCLSKAGRVEAAFELFQDMKFKGLNADTVTYNILINGLGRAGKLDAAG 362

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
            +  +M+  G  PN  TYN +I          +A+ L   M   G  P  ++Y++LI+  
Sbjct: 363 ALLLEMEENGCAPNIITYNTLISSYGKWSNLSAATRLFLEMKERGVAPNVVSYSSLIEGF 422

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
              G  D A++L   +  EG P + + YN ++      GR 
Sbjct: 423 GKAGRTDAAISLFREMKAEGCPPNHVTYNLLIDCLIRAGRF 463



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/270 (23%), Positives = 116/270 (42%), Gaps = 21/270 (7%)

Query: 421 MRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISM 480
           ++ K  PD  T+ +L       +   E  N+F              DM + N+     + 
Sbjct: 92  LKAKFVPDHTTFNILIDSLAKADQVEEACNVFG-------------DMFKLNVSPDVYTY 138

Query: 481 KNLLKALGAEGMIRELIQYFCDSKTPLGTP----TYNTVLHSLVEAQESHRAMEIFKQMK 536
             L+++LG  G I  +++ F +S T  G      TY++V+H+   A     A +IF+QM 
Sbjct: 139 TILIRSLGTIGRIDAVMKLF-ESMTAQGCQPNLFTYHSVMHAFGSAGRVDEACDIFQQMV 197

Query: 537 TCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFD 596
             G+ P+A TYNI+ID        + A   V    +   +   +TY +L+  L   GD  
Sbjct: 198 QKGLQPDAVTYNILIDAFGKTGQLERAFDFVG---KSRSFTNEVTYNSLLSSLGRKGDIQ 254

Query: 597 EALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVF 656
             + L   +  +G+  + L Y  ++++    GR++ +  +  +M  N ++ D  T + V 
Sbjct: 255 GLMELFGQMKAKGLVSNELTYAILIERLGWAGRVEDVWQLYLEMVDNDIKYDIVTINNVL 314

Query: 657 SGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
                 G   +A E  Q +  + L  +  T
Sbjct: 315 DCLSKAGRVEAAFELFQDMKFKGLNADTVT 344



 Score = 71.6 bits (174), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/219 (21%), Positives = 96/219 (43%), Gaps = 6/219 (2%)

Query: 451 MFSQVDSAKRINAIEM---DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPL 507
           M + + +A+R + ++     M ++  +        L+   G   M+ + +Q         
Sbjct: 1   MLTLLGAARRYDDVQRLVESMQKDRTKLDTQLFNTLIHIYGEANMMEKALQTLAAFTKEG 60

Query: 508 GTPT---YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSAS 564
           G PT   Y++++   ++  +    + ++KQM      P+  T+NI+ID  +     + A 
Sbjct: 61  GRPTAYTYSSMIQVFMKGGDVQNGLLMYKQMLKAKFVPDHTTFNILIDSLAKADQVEEAC 120

Query: 565 ALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKA 624
            +   M +    P   TYT LI+ L   G  D  + L + ++ +G   ++  Y++++   
Sbjct: 121 NVFGDMFKLNVSPDVYTYTILIRSLGTIGRIDAVMKLFESMTAQGCQPNLFTYHSVMHAF 180

Query: 625 CEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
              GR+D    I +QM Q  +QPD  T + +   +   G
Sbjct: 181 GSAGRVDEACDIFQQMVQKGLQPDAVTYNILIDAFGKTG 219



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 83/195 (42%), Gaps = 2/195 (1%)

Query: 493 IRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID 552
           ++ L++     +T L T  +NT++H   EA    +A++        G  P A TY+ MI 
Sbjct: 14  VQRLVESMQKDRTKLDTQLFNTLIHIYGEANMMEKALQTLAAFTKEGGRPTAYTYSSMIQ 73

Query: 553 CCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL-DLVSLEGIP 611
                   ++   +   M++  F P   T+  LI  L      +EA N+  D+  L   P
Sbjct: 74  VFMKGGDVQNGLLMYKQMLKAKFVPDHTTFNILIDSLAKADQVEEACNVFGDMFKLNVSP 133

Query: 612 HDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEA 671
            DV  Y  +++     GRID +  + E M     QP+  T H V   + + G  + A + 
Sbjct: 134 -DVYTYTILIRSLGTIGRIDAVMKLFESMTAQGCQPNLFTYHSVMHAFGSAGRVDEACDI 192

Query: 672 LQVLSMRMLCEEVST 686
            Q +  + L  +  T
Sbjct: 193 FQQMVQKGLQPDAVT 207



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 71/313 (22%), Positives = 126/313 (40%), Gaps = 56/313 (17%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRA---------------- 337
           +++  V+HA G       A  +  QM   GLQP + TY+  I A                
Sbjct: 171 FTYHSVMHAFGSAGRVDEACDIFQQMVQKGLQPDAVTYNILIDAFGKTGQLERAFDFVGK 230

Query: 338 ------------IVSDRGLRNG-----MEVLKIMQQNNLKPQDSTIATLSVECSKALEL- 379
                       ++S  G R G     ME+   M+   L   + T A L      A  + 
Sbjct: 231 SRSFTNEVTYNSLLSSLG-RKGDIQGLMELFGQMKAKGLVSNELTYAILIERLGWAGRVE 289

Query: 380 DLAEALLDQISRCT--NPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLF 436
           D+ +  L+ +      +    +  L       + E A ++F  M+ K L  D  TY +L 
Sbjct: 290 DVWQLYLEMVDNDIKYDIVTINNVLDCLSKAGRVEAAFELFQDMKFKGLNADTVTYNILI 349

Query: 437 SLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIREL 496
           +  G             ++D+A    A+ ++M  N    + I+   L+ + G    +   
Sbjct: 350 NGLGRA----------GKLDAA---GALLLEMEENGCAPNIITYNTLISSYGKWSNLSAA 396

Query: 497 IQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC 553
            + F + K     P   +Y++++    +A  +  A+ +F++MK  G PPN  TYN++IDC
Sbjct: 397 TRLFLEMKERGVAPNVVSYSSLIEGFGKAGRTDAAISLFREMKAEGCPPNHVTYNLLIDC 456

Query: 554 CSIIRCFKSASAL 566
             +IR  +  +A+
Sbjct: 457 --LIRAGRFGAAM 467


>gi|357473969|ref|XP_003607269.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein-like
           protein [Medicago truncatula]
 gi|355508324|gb|AES89466.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein-like
           protein [Medicago truncatula]
          Length = 970

 Score = 99.0 bits (245), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 125/561 (22%), Positives = 225/561 (40%), Gaps = 39/561 (6%)

Query: 128 MMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSR 187
           ++  L K G ++ A +L+  LG R+G  P L VYN+ + A  K   +  A L    M S 
Sbjct: 329 LVDGLRKKGNIDSAYDLVVKLG-RFGFLPNLFVYNALINALCKGEDLDKAELLYKNMHSM 387

Query: 188 MVGKNEVTYTELLKLAVWQKNLSAVHEIW-----EDYIKHYSLSIFSLRKFVWSFTRLRD 242
            +  N+VTY+ L+  +  ++ +  V E +     ED I+    +I+     +    +  D
Sbjct: 388 NLPLNDVTYSILID-SFCKRGMLDVAESYFGRMIEDGIRE---TIYPYNSLINGHCKFGD 443

Query: 243 LKSAYETLQHMV--ALAMMGKLYINRTSEGRLRSSRLDIPIPL----NALPVMKVLRWSF 296
           L +A      M+   L      +    S G  +  +++    L    N   +   + ++F
Sbjct: 444 LSAAEFLYTKMINEGLEPTATTFTTLIS-GYCKDLQVEKAFKLYREMNEKEIAPSV-YTF 501

Query: 297 SDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQ 356
           + +I+    T     A +L  +M    ++P+  TY+  I        +    E+L+ M  
Sbjct: 502 TALIYGLCSTNEMAEASKLFDEMVERKIKPTEVTYNVMIEGYCKAHNMDKAFELLEDMLH 561

Query: 357 NNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT---NPKPFSAFLAACDTMDKPER 413
           N L P   T   L         +  A+  +D + +     N   +SA L       +   
Sbjct: 562 NGLVPDTYTYRPLISGLCSTGRVSAAKDFIDDLHKKNLKLNEMCYSALLHGYCGQGRLTE 621

Query: 414 AIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNN 472
           A+    +M Q+ +  D+  + +L            +G M  Q    KR+  +   M    
Sbjct: 622 ALSASCEMIQRGINMDLVCHAVLI-----------DGAMKQQ--DMKRLFGLLKKMYDQG 668

Query: 473 IQHSHISMKNLLKALGAEGMIR---ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAM 529
           ++   +   +++ A   EG  +   E +      K      TY   ++ L +  E  RA 
Sbjct: 669 LRPDSVIYTSMIDAYSKEGSFKKSGECLDLMVTEKCFPNVVTYTAFMNGLCKVGEIDRAG 728

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
            +F++M T  I PN+ TY   +D  +     K A+ L   M++ G    T TY  LI+  
Sbjct: 729 HLFEKMLTANISPNSVTYGCFLDSLTKEGNMKEATDLHHEMLK-GLLANTATYNILIRGF 787

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649
              G   EA  +L  ++  GI  D + Y+TI+ + C  G +     + + M +  V+PD 
Sbjct: 788 CKLGRLIEATKVLSEMTENGIFPDCITYSTIIYEHCRSGDVGAAVELWDTMLRKGVEPDS 847

Query: 650 STCHFVFSGYVNCGFHNSAME 670
              + +  G    G  + A E
Sbjct: 848 VAFNLLIYGCCVNGALDKAFE 868



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 86/432 (19%), Positives = 170/432 (39%), Gaps = 48/432 (11%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           ++ S VI +    ++   A++ +L M+S     S  TY+  I  +    G+   +EV K 
Sbjct: 219 YTCSAVIRSLCELKDFCRAKEKILWMESNRFDLSIVTYNVLIHGLCKGGGVLEALEVRKS 278

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKP-- 411
           +++  LK    T  TL +   +  + D    L++++         +A     D + K   
Sbjct: 279 LREKGLKEDVVTYCTLVLGFCRVQQFDDGICLMNEMVELGFVPTEAAVSGLVDGLRKKGN 338

Query: 412 -ERAIKIFAKM-RQKLRPDIRTY----------------ELLFSLFGNVNAPYEEGNMFS 453
            + A  +  K+ R    P++  Y                ELL+    ++N P  +     
Sbjct: 339 IDSAYDLVVKLGRFGFLPNLFVYNALINALCKGEDLDKAELLYKNMHSMNLPLNDVTYSI 398

Query: 454 QVDS-AKR--INAIEMDMAR-------------NNIQHSHISMKNLLKALGAEGMIRELI 497
            +DS  KR  ++  E    R             N++ + H    +L     AE +  ++I
Sbjct: 399 LIDSFCKRGMLDVAESYFGRMIEDGIRETIYPYNSLINGHCKFGDL---SAAEFLYTKMI 455

Query: 498 QYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSII 557
               +   P  T T+ T++    +  +  +A +++++M    I P+  T+  +I      
Sbjct: 456 N---EGLEPTAT-TFTTLISGYCKDLQVEKAFKLYREMNEKEIAPSVYTFTALIYGLCST 511

Query: 558 RCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLY 617
                AS L   MV     P  +TY  +I+      + D+A  LL+ +   G+  D   Y
Sbjct: 512 NEMAEASKLFDEMVERKIKPTEVTYNVMIEGYCKAHNMDKAFELLEDMLHNGLVPDTYTY 571

Query: 618 NTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEA-----L 672
             ++   C  GR+   +  I+ +H+  ++ +      +  GY   G    A+ A      
Sbjct: 572 RPLISGLCSTGRVSAAKDFIDDLHKKNLKLNEMCYSALLHGYCGQGRLTEALSASCEMIQ 631

Query: 673 QVLSMRMLCEEV 684
           + ++M ++C  V
Sbjct: 632 RGINMDLVCHAV 643



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 79/391 (20%), Positives = 150/391 (38%), Gaps = 26/391 (6%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           + S ++    +  N   A  L++++   G  P+   Y+  I A+     L     + K M
Sbjct: 325 AVSGLVDGLRKKGNIDSAYDLVVKLGRFGFLPNLFVYNALINALCKGEDLDKAELLYKNM 384

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALL-----DQISRCTNPKPFSAFLAACDTMD 409
              NL   D T + L     K   LD+AE+       D I       P+++ +       
Sbjct: 385 HSMNLPLNDVTYSILIDSFCKRGMLDVAESYFGRMIEDGIRETI--YPYNSLINGHCKFG 442

Query: 410 KPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
               A  ++ KM  + L P   T+  L S +              QV+ A ++     +M
Sbjct: 443 DLSAAEFLYTKMINEGLEPTATTFTTLISGYCKD----------LQVEKAFKLYR---EM 489

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRELIQYF---CDSKTPLGTPTYNTVLHSLVEAQES 525
               I  S  +   L+  L +   + E  + F    + K      TYN ++    +A   
Sbjct: 490 NEKEIAPSVYTFTALIYGLCSTNEMAEASKLFDEMVERKIKPTEVTYNVMIEGYCKAHNM 549

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMID-CCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
            +A E+ + M   G+ P+  TY  +I   CS  R   +A   +  + +       M Y+A
Sbjct: 550 DKAFELLEDMLHNGLVPDTYTYRPLISGLCSTGR-VSAAKDFIDDLHKKNLKLNEMCYSA 608

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
           L+      G   EAL+    +   GI  D++ +  ++  A ++  +  +  ++++M+   
Sbjct: 609 LLHGYCGQGRLTEALSASCEMIQRGINMDLVCHAVLIDGAMKQQDMKRLFGLLKKMYDQG 668

Query: 645 VQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
           ++PD      +   Y   G    + E L ++
Sbjct: 669 LRPDSVIYTSMIDAYSKEGSFKKSGECLDLM 699



 Score = 42.7 bits (99), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 61/293 (20%), Positives = 106/293 (36%), Gaps = 48/293 (16%)

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEA------------------------------- 141
           + +K + LN  CY  ++   C  G L EA                               
Sbjct: 594 LHKKNLKLNEMCYSALLHGYCGQGRLTEALSASCEMIQRGINMDLVCHAVLIDGAMKQQD 653

Query: 142 -SNLIYFLGERY--GIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTE 198
              L   L + Y  G+ P   +Y S + A +K  S   +  CLDLM +     N VTYT 
Sbjct: 654 MKRLFGLLKKMYDQGLRPDSVIYTSMIDAYSKEGSFKKSGECLDLMVTEKCFPNVVTYTA 713

Query: 199 LLKLAVWQKNLSAVHEIWEDYIK-HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALA 257
            +        +     ++E  +  + S +  +   F+ S T+  ++K A +    M+   
Sbjct: 714 FMNGLCKVGEIDRAGHLFEKMLTANISPNSVTYGCFLDSLTKEGNMKEATDLHHEMLKGL 773

Query: 258 MMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLR--------WSFSDVIHACGRTQNS 309
           +      N    G  +  RL     + A  V+  +          ++S +I+   R+ + 
Sbjct: 774 LANTATYNILIRGFCKLGRL-----IEATKVLSEMTENGIFPDCITYSTIIYEHCRSGDV 828

Query: 310 GLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQ 362
           G A +L   M   G++P S  ++  I     +  L    E+   M    LKP+
Sbjct: 829 GAAVELWDTMLRKGVEPDSVAFNLLIYGCCVNGALDKAFELRNDMLSRGLKPR 881


>gi|255539805|ref|XP_002510967.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550082|gb|EEF51569.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 774

 Score = 99.0 bits (245), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 93/397 (23%), Positives = 172/397 (43%), Gaps = 21/397 (5%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           +  +IHA  +      A +L+ +M  +G  P   T++  I  +     +  G +++  M 
Sbjct: 246 YQTLIHALSKRDRVNEALKLLEEMFLMGCLPDVDTFNDVIYGLCRLNRIHEGAKLVDRML 305

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAI 415
                P D T   L     +  ++D A+ LL+++    N   F+  +       + + A 
Sbjct: 306 FRGFTPNDITYGVLMNGLCRVGKVDEAQVLLNKVPT-PNDVHFTILINGYVKSGRLDEAN 364

Query: 416 K-IFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNI 473
             ++ KM +   RPD+ T+  L      ++   ++G M S VD          DM+ N  
Sbjct: 365 AFLYDKMIKNGCRPDVFTFNTL------IHGLCKKGLMGSAVDMVN-------DMSANGC 411

Query: 474 QHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAME 530
             + I+   LL     +  + E   ++         L    YN +L +L +  +  +A++
Sbjct: 412 TPNLITYTTLLDGFCKKNQLEEAGYVLNEMSAKGFELNIMGYNVLLRALCKNGKVPKALD 471

Query: 531 IFKQMKTCGIPPNAATYNIMI-DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
           +  +M   G  P+  T+N +I   C + R  + A AL   M+ DG    T+TY  LI   
Sbjct: 472 MLGEMSDKGCKPDIFTFNTLIFGLCKVDR-KEDALALYRDMLLDGVIANTVTYNTLIHAF 530

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649
           L  G   EAL L++ +   G P D + YN ++K  C+ G  +    + ++M +  + P  
Sbjct: 531 LRGGAIQEALKLVNDMLFRGCPLDEITYNGLIKAFCKLGATEKALGLFDEMVRKDLVPSN 590

Query: 650 STCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
            +C+ + +G    G   +A+E L+ +  R L  +V T
Sbjct: 591 ISCNLLINGLCRVGKVCNALELLRDMIHRGLAPDVVT 627



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 81/350 (23%), Positives = 155/350 (44%), Gaps = 20/350 (5%)

Query: 318 QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKAL 377
           +M   G +P   T++  I  +     + + ++++  M  N   P   T  TL     K  
Sbjct: 370 KMIKNGCRPDVFTFNTLIHGLCKKGLMGSAVDMVNDMSANGCTPNLITYTTLLDGFCKKN 429

Query: 378 ELDLAEALLDQISRCT---NPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYE 433
           +L+ A  +L+++S      N   ++  L A     K  +A+ +  +M  K  +PDI T+ 
Sbjct: 430 QLEEAGYVLNEMSAKGFELNIMGYNVLLRALCKNGKVPKALDMLGEMSDKGCKPDIFTFN 489

Query: 434 LLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMI 493
            L  +FG             +VD  +   A+  DM  + +  + ++   L+ A    G I
Sbjct: 490 TL--IFG-----------LCKVDRKEDALALYRDMLLDGVIANTVTYNTLIHAFLRGGAI 536

Query: 494 RELIQYFCD---SKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIM 550
           +E ++   D      PL   TYN ++ +  +   + +A+ +F +M    + P+  + N++
Sbjct: 537 QEALKLVNDMLFRGCPLDEITYNGLIKAFCKLGATEKALGLFDEMVRKDLVPSNISCNLL 596

Query: 551 IDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGI 610
           I+    +    +A  L+  M+  G  P  +TY +LI  L   G+  EA NL + +  EGI
Sbjct: 597 INGLCRVGKVCNALELLRDMIHRGLAPDVVTYNSLINGLCKMGNIREAFNLFNKLQAEGI 656

Query: 611 PHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYV 660
             D + YNT++   C  G  D    ++ +  +N   P+  T + + S ++
Sbjct: 657 QPDAITYNTLICWHCRAGMFDDAYLLLLRGVENAFIPNDVTWYILVSNFI 706



 Score = 42.4 bits (98), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 27/117 (23%), Positives = 54/117 (46%)

Query: 542 PNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNL 601
           P   +YN+++D      C   A+ +   M+  G  P   T+  ++K L    + D A +L
Sbjct: 171 PTFKSYNVVLDILVSANCPSVAANVFYEMLSKGVIPTVYTFGVVMKALCMVNEVDNACSL 230

Query: 602 LDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
           L  ++  G   + ++Y T++    ++ R++    ++E+M      PD  T + V  G
Sbjct: 231 LRDMTKHGCVPNSVVYQTLIHALSKRDRVNEALKLLEEMFLMGCLPDVDTFNDVIYG 287


>gi|356525427|ref|XP_003531326.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
           mitochondrial-like [Glycine max]
          Length = 521

 Score = 99.0 bits (245), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 91/374 (24%), Positives = 158/374 (42%), Gaps = 20/374 (5%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           W+F+  ++   R      A +L   M S G  P   +Y   I A+ + +      +V + 
Sbjct: 120 WAFNTYLNLLCRQNRLETALELFHSMPSKGRDPDVVSYTIIIDALCNAKRFDEAAKVWRR 179

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRC---TNPKPFSAFLAACDTMDK 410
           +    L P       L V       +DLA  L+  + +     N   ++A +     M +
Sbjct: 180 LIDKGLSPDYKACVALVVGLCSGGRVDLAYELVVGVIKGGVKVNSLVYNALIDGFCRMGR 239

Query: 411 PERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
            ++A+KI A M R    PD+ TY +L      +N   EEG     VD A R+  +E  M 
Sbjct: 240 VDKAMKIKAFMSRTGCVPDLVTYNIL------LNYCCEEG----MVDEAVRL--VET-ME 286

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESH 526
           R+ ++    S   LLK      M+     ++     +K      +YNTV+ +  +A+ + 
Sbjct: 287 RSGVEPDLYSYNELLKGFCKANMVDRAHLMMVERMQTKGMCDVVSYNTVITAFCKARRTR 346

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
           +  E+F++M   GI P+  T+NI+ID             L+  M +    P  + YTA++
Sbjct: 347 KGYELFEEMCGKGIRPDMVTFNILIDAFLREGSTHVVKKLLDEMTKMRVLPDCIFYTAVV 406

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
             L   G  D A ++   +   G+  DV+ YN +L   C+  R+     + ++M    + 
Sbjct: 407 DHLCKNGKVDVAHSVFRDMVENGVNPDVISYNALLNGFCKTSRVMDAMHLFDEMQSKGLY 466

Query: 647 PDPSTCHFVFSGYV 660
           PD  T   +  G +
Sbjct: 467 PDEVTYKLIVGGLI 480



 Score = 64.3 bits (155), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 71/320 (22%), Positives = 134/320 (41%), Gaps = 19/320 (5%)

Query: 369 LSVECSKA--LELDLAEALL---DQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ 423
           +S  CS    + L L  +LL   D +    +   F+ +L      ++ E A+++F  M  
Sbjct: 88  ISALCSAPNNINLPLIHSLLLDMDSLGFVPDIWAFNTYLNLLCRQNRLETALELFHSMPS 147

Query: 424 KLR-PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKN 482
           K R PD+ +Y ++     N            + D A ++    +D   +    + +++  
Sbjct: 148 KGRDPDVVSYTIIIDALCNA----------KRFDEAAKVWRRLIDKGLSPDYKACVALVV 197

Query: 483 LLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPP 542
            L + G   +  EL+         + +  YN ++          +AM+I   M   G  P
Sbjct: 198 GLCSGGRVDLAYELVVGVIKGGVKVNSLVYNALIDGFCRMGRVDKAMKIKAFMSRTGCVP 257

Query: 543 NAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEA-LNL 601
           +  TYNI+++ C        A  LV  M R G  P   +Y  L+K        D A L +
Sbjct: 258 DLVTYNILLNYCCEEGMVDEAVRLVETMERSGVEPDLYSYNELLKGFCKANMVDRAHLMM 317

Query: 602 LDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVN 661
           ++ +  +G+  DV+ YNT++   C+  R      + E+M    ++PD  T + +   ++ 
Sbjct: 318 VERMQTKGMC-DVVSYNTVITAFCKARRTRKGYELFEEMCGKGIRPDMVTFNILIDAFLR 376

Query: 662 CGFHNSAMEAL-QVLSMRML 680
            G  +   + L ++  MR+L
Sbjct: 377 EGSTHVVKKLLDEMTKMRVL 396



 Score = 62.8 bits (151), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 88/177 (49%), Gaps = 3/177 (1%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPN-AATYNIMIDCCSIIRCFKSASALVSM 569
           +Y  ++ +L  A+    A ++++++   G+ P+  A   +++  CS  R    A  LV  
Sbjct: 156 SYTIIIDALCNAKRFDEAAKVWRRLIDKGLSPDYKACVALVVGLCSGGR-VDLAYELVVG 214

Query: 570 MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
           +++ G    ++ Y ALI      G  D+A+ +   +S  G   D++ YN +L   CE+G 
Sbjct: 215 VIKGGVKVNSLVYNALIDGFCRMGRVDKAMKIKAFMSRTGCVPDLVTYNILLNYCCEEGM 274

Query: 630 IDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSA-MEALQVLSMRMLCEEVS 685
           +D    ++E M ++ V+PD  + + +  G+      + A +  ++ +  + +C+ VS
Sbjct: 275 VDEAVRLVETMERSGVEPDLYSYNELLKGFCKANMVDRAHLMMVERMQTKGMCDVVS 331



 Score = 47.0 bits (110), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 54/278 (19%), Positives = 110/278 (39%), Gaps = 8/278 (2%)

Query: 118 IGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHA 177
           + +N+  Y  ++   C+ G +++A  +  F+  R G  P L  YN  L  C +   +  A
Sbjct: 220 VKVNSLVYNALIDGFCRMGRVDKAMKIKAFM-SRTGCVPDLVTYNILLNYCCEEGMVDEA 278

Query: 178 NLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSL-SIFSLRKFVWS 236
              ++ M+   V  +  +Y ELLK       +   H +  + ++   +  + S    + +
Sbjct: 279 VRLVETMERSGVEPDLYSYNELLKGFCKANMVDRAHLMMVERMQTKGMCDVVSYNTVITA 338

Query: 237 FTRLRDLKSAYETLQHMVALAMMGKLY-INRTSEGRLRSSRLDIPIP-LNALPVMKVLR- 293
           F + R  +  YE  + M    +   +   N   +  LR     +    L+ +  M+VL  
Sbjct: 339 FCKARRTRKGYELFEEMCGKGIRPDMVTFNILIDAFLREGSTHVVKKLLDEMTKMRVLPD 398

Query: 294 --WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVL 351
             +  + V H C +     +A  +   M   G+ P   +Y+  +        + + M + 
Sbjct: 399 CIFYTAVVDHLC-KNGKVDVAHSVFRDMVENGVNPDVISYNALLNGFCKTSRVMDAMHLF 457

Query: 352 KIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI 389
             MQ   L P + T   +     +  ++ LA  + DQ+
Sbjct: 458 DEMQSKGLYPDEVTYKLIVGGLIRGKKISLACRVWDQM 495


>gi|297816676|ref|XP_002876221.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322059|gb|EFH52480.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 754

 Score = 99.0 bits (245), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 118/557 (21%), Positives = 207/557 (37%), Gaps = 124/557 (22%)

Query: 152 YGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSA 211
           +GI P +  +N  + A  + H +  A L L+ M S  +  +E T+T +++  + + +L  
Sbjct: 183 WGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTIMQGYIEEGDLDG 242

Query: 212 VHEIWEDYIKHY-SLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEG 270
              I E  ++   S S  S+   V  F +   ++ A   +Q M                 
Sbjct: 243 ALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEM----------------- 285

Query: 271 RLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHT 330
               S  D   P          +++F+ +++   +  +   A ++M  M   G  P  +T
Sbjct: 286 ----SNQDGFFPD---------QYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYT 332

Query: 331 YDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQIS 390
           Y+  I  +     ++  +E L  M   +  P   T  TL     K  +++ A  L   ++
Sbjct: 333 YNSVISGLCKLGEVKEAVEFLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLT 392

Query: 391 R-------CTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNV 442
                   CT    F++ +           A+++F +MR K   PD  TY +L       
Sbjct: 393 SKGILPDVCT----FNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLID----- 443

Query: 443 NAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCD 502
                     S     K   A+                 N+LK +   G  R +I     
Sbjct: 444 ----------SLCSKGKLDEAL-----------------NMLKQMELSGCARSVI----- 471

Query: 503 SKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKS 562
                   TYNT++    +A +   A EIF +M+  G+  N+ TYN +ID     R  + 
Sbjct: 472 --------TYNTLIDGFCKANKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVED 523

Query: 563 ASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILK 622
           AS L+  M+ +G  P   TY +L+      GD  +A +++  ++  G   D++ Y T++ 
Sbjct: 524 ASQLMDQMIMEGQKPDKFTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLIS 583

Query: 623 KACEKGRIDV------------------------------------IEFIIEQMHQNKVQ 646
             C+ GR++V                                    I    E + QN+  
Sbjct: 584 GLCKAGRVEVASKLLRSIQMKGIALTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAA 643

Query: 647 PDPSTCHFVFSGYVNCG 663
           PD  +   VF G  N G
Sbjct: 644 PDAVSYRIVFRGLCNGG 660



 Score = 76.6 bits (187), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 105/501 (20%), Positives = 189/501 (37%), Gaps = 71/501 (14%)

Query: 196 YTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFT-------RLRDLKSAYE 248
           Y  +L L V   NL  V       I H  +S++ ++  V +F        R   L+ A  
Sbjct: 157 YNRMLNLLVDGNNLKLVE------IAHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAIL 210

Query: 249 TLQHMVALAMM-GKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWS---FSDVIHA-C 303
            L+ M +  ++  +       +G +    LD  + +    V     WS    + ++H  C
Sbjct: 211 MLEDMPSYGLVPDEKTFTTIMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFC 270

Query: 304 --GRTQNSGLAEQLMLQMQSL-GLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLK 360
             GR ++   A   + +M +  G  P  +T++  +  +     +++ +E++ +M Q    
Sbjct: 271 KEGRVED---ALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYD 327

Query: 361 PQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAK 420
           P   T  ++     K  E+  A   LDQ+                               
Sbjct: 328 PDVYTYNSVISGLCKLGEVKEAVEFLDQM------------------------------- 356

Query: 421 MRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISM 480
           + +   P+  TY  L S     N          QV+ A  +  +   +    I     + 
Sbjct: 357 ITRDCSPNTVTYNTLISTLCKEN----------QVEEATELARV---LTSKGILPDVCTF 403

Query: 481 KNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKT 537
            +L++ L      R  ++ F + ++    P   TYN ++ SL    +   A+ + KQM+ 
Sbjct: 404 NSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMEL 463

Query: 538 CGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDE 597
            G   +  TYN +ID        + A  +   M   G    ++TY  LI  L      ++
Sbjct: 464 SGCARSVITYNTLIDGFCKANKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVED 523

Query: 598 ALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFS 657
           A  L+D + +EG   D   YN++L   C  G I     I++ M  N  +PD  T   + S
Sbjct: 524 ASQLMDQMIMEGQKPDKFTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLIS 583

Query: 658 GYVNCGFHNSAMEALQVLSMR 678
           G    G    A + L+ + M+
Sbjct: 584 GLCKAGRVEVASKLLRSIQMK 604



 Score = 69.3 bits (168), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 81/372 (21%), Positives = 142/372 (38%), Gaps = 48/372 (12%)

Query: 319 MQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALE 378
           +   GL+P +H Y+  +  +V    L+        M    +KP  ST   L     +A +
Sbjct: 145 IDDFGLKPDTHFYNRMLNLLVDGNNLKLVEIAHAKMSVWGIKPDVSTFNVLIKALCRAHQ 204

Query: 379 LDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSL 438
           L  A  +L+                     D P             L PD +T+  +   
Sbjct: 205 LRPAILMLE---------------------DMPSYG----------LVPDEKTFTTIMQG 233

Query: 439 FGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQ 498
           +       EEG++    D A RI      M       S++S+  ++     EG + + + 
Sbjct: 234 Y------IEEGDL----DGALRIRE---QMVEFGCSWSNVSVNVIVHGFCKEGRVEDALN 280

Query: 499 YFCDSKTPLG----TPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCC 554
           +  +     G      T+NT+++ L +A     A+EI   M   G  P+  TYN +I   
Sbjct: 281 FIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGL 340

Query: 555 SIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDV 614
             +   K A   +  M+     P T+TY  LI  L      +EA  L  +++ +GI  DV
Sbjct: 341 CKLGEVKEAVEFLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDV 400

Query: 615 LLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQV 674
             +N++++  C      V   + E+M     +PD  T + +     + G  + A+  L+ 
Sbjct: 401 CTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQ 460

Query: 675 LSMRMLCEEVST 686
           + +      V T
Sbjct: 461 MELSGCARSVIT 472



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 72/339 (21%), Positives = 129/339 (38%), Gaps = 40/339 (11%)

Query: 121 NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFL-GACAKLHSMVHANL 179
           N   Y  ++  LCK   +EEA+ L   L  + GI P +  +NS + G C   +  V   L
Sbjct: 364 NTVTYNTLISTLCKENQVEEATELARVLTSK-GILPDVCTFNSLIQGLCLTRNHRVAMEL 422

Query: 180 CLDLMDSRMVGKNEVTYTELLKLAVWQKNLS-AVHEIWEDYIKHYSLSIFSLRKFVWSFT 238
             + M S+    +E TY  L+     +  L  A++ + +  +   + S+ +    +  F 
Sbjct: 423 -FEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFC 481

Query: 239 RLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSD 298
           +   ++ A E    M                G  R+S                   +++ 
Sbjct: 482 KANKIREAEEIFDEMEV-------------HGVSRNS------------------VTYNT 510

Query: 299 VIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNN 358
           +I    +++    A QLM QM   G +P   TY+  +        ++   ++++ M  N 
Sbjct: 511 LIDGLCKSRRVEDASQLMDQMIMEGQKPDKFTYNSLLTHFCRGGDIKKAADIVQAMTSNG 570

Query: 359 LKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKPERAI 415
            +P   T  TL     KA  +++A  LL  I        P  ++  +       K   AI
Sbjct: 571 CEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGIALTPHAYNPVIQGLFRKRKTTEAI 630

Query: 416 KIFAKM--RQKLRPDIRTYELLFSLFGNVNAPYEEGNMF 452
            +F +M  + +  PD  +Y ++F    N   P  E   F
Sbjct: 631 NLFREMLEQNEAAPDAVSYRIVFRGLCNGGGPIREAVDF 669



 Score = 47.8 bits (112), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 63/303 (20%), Positives = 124/303 (40%), Gaps = 17/303 (5%)

Query: 107 METWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLG 166
           ME +  M  K    +   Y +++ +LC  G L+EA N++  + E  G    +  YN+ + 
Sbjct: 420 MELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQM-ELSGCARSVITYNTLID 478

Query: 167 ACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYSL 225
              K + +  A    D M+   V +N VTY  L+      + +    ++ +  I +    
Sbjct: 479 GFCKANKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQMIMEGQKP 538

Query: 226 SIFSLRKFVWSFTRLRDLKSAYETLQHMVA------LAMMGKLYINRTSEGRLR-SSRLD 278
             F+    +  F R  D+K A + +Q M +      +   G L       GR+  +S+L 
Sbjct: 539 DKFTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLL 598

Query: 279 IPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQM-QSLGLQPSSHTYDGFIRA 337
             I +  + +      +++ VI    R + +  A  L  +M +     P + +Y    R 
Sbjct: 599 RSIQMKGIALTP---HAYNPVIQGLFRKRKTTEAINLFREMLEQNEAAPDAVSYRIVFRG 655

Query: 338 IVSDRG-LRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPK 396
           + +  G +R  ++ L  + +    P+ S++  L+      L L + E L+  ++      
Sbjct: 656 LCNGGGPIREAVDFLVELLEKGFVPEFSSLYMLA---EGLLTLSMEETLVKLVNMVMQKA 712

Query: 397 PFS 399
            FS
Sbjct: 713 RFS 715


>gi|147803305|emb|CAN75473.1| hypothetical protein VITISV_002797 [Vitis vinifera]
          Length = 1356

 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 133/619 (21%), Positives = 239/619 (38%), Gaps = 40/619 (6%)

Query: 60  VDALCRGERSRASHLLLN-LGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEI 118
           +D LC   RS  ++LLL  +     S     +  ++N   +        + +  M + ++
Sbjct: 310 IDNLCTNHRSAKAYLLLKKMRKEMISPNEVTYNTLINGFVKEGKIGVAAQVFNEMSKFDL 369

Query: 119 GLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHAN 178
             N   Y  ++   C  G  EEA  L+  + E  G+      Y + L    K      A 
Sbjct: 370 SPNCVTYNALIGGHCHVGDFEEALRLLDHM-EAAGLRLNEVTYGTLLNGLCKHEKFELAK 428

Query: 179 LCLDLMDSRMVGKNEVTYTELL----KLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFV 234
             L+ M    +    + YT L+    K  +  + +  V  +++D +      + +    +
Sbjct: 429 RLLERMRVNDMVVGHIAYTVLIDGLCKNGMLDEAVQLVGNMYKDGVNP---DVITYSSLI 485

Query: 235 WSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVL-- 292
             F R+ ++KSA E +  M        L +N+     L  +         A+ V  V+  
Sbjct: 486 NGFCRVGNIKSAKEIICRMYR----SGLVLNKIIYSTLIYNFCQHGNVTEAMKVYAVMNC 541

Query: 293 ------RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRN 346
                  ++ + ++ +  R    G AE+ +  M  +GL P+S TYD  I    S     N
Sbjct: 542 NGHGADHFTCNVLVSSLCRDGKLGEAEKFLCHMSRIGLVPNSITYDCIINGYGSIGDPLN 601

Query: 347 GMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ---ISRCTNPKPFSAFLA 403
                  M +    P   T  +L     K   L  A+  L++   I    +   ++  LA
Sbjct: 602 AFSFFDDMIKCGQHPSFFTYGSLLKGLCKGGNLVEAKKFLNRLHYIPGAVDSVMYNTLLA 661

Query: 404 ACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRIN 462
                     A+ +F KM Q  + PD  TY  L +             +  +  +   + 
Sbjct: 662 ETCKSGNLHEAVALFDKMVQNNVLPDSYTYSSLLT------------GLCRKGKAVTAVC 709

Query: 463 AIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYF---CDSKTPLGTPTYNTVLHSL 519
                M R  +  +H+    L+  L   G  +    +F       T   T  +N ++ S 
Sbjct: 710 LFGTAMGRGTLFPNHVMYTCLVDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSC 769

Query: 520 VEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQT 579
               +  +A + F  M+  G+ PN ATYNI++   S  +      +L S M+R+G +P  
Sbjct: 770 SRRGQMMKANDFFSTMRWWGVCPNLATYNILLHGFSKKQALLRYLSLYSTMMREGIFPDK 829

Query: 580 MTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQ 639
           +T+ +LI  L   G  D  + LL  + +EG   D   +N ++ K  E G++     ++  
Sbjct: 830 LTFHSLILGLSKSGIPDLGVKLLGKMIMEGTLADQFTFNILINKYSESGKMRKAFDLVNF 889

Query: 640 MHQNKVQPDPSTCHFVFSG 658
           M+   V PD  T + +F+G
Sbjct: 890 MNTLGVFPDRDTYNHIFNG 908



 Score = 82.4 bits (202), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 80/166 (48%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           T N +L S+V+ + +     +F++M   GI PN  T+NI+I+   +    K A  L+  M
Sbjct: 200 TCNMILASMVKDKRTELVWSLFREMSDKGICPNVGTFNILINGLCVEGNLKKAGNLLKQM 259

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
             +GF P  +TY  L+      G +  A+ L+D +  +GI  DV  YN  +   C   R 
Sbjct: 260 EENGFVPTIVTYNTLLNWYCKKGRYKAAIELIDYMICKGIEADVCTYNVFIDNLCTNHRS 319

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
                ++++M +  + P+  T + + +G+V  G    A +    +S
Sbjct: 320 AKAYLLLKKMRKEMISPNEVTYNTLINGFVKEGKIGVAAQVFNEMS 365



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 123/573 (21%), Positives = 218/573 (38%), Gaps = 49/573 (8%)

Query: 111 RMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAK 170
           + MEE         Y  ++   CK G  + A  LI ++  + GI   +  YN F+     
Sbjct: 257 KQMEENGFVPTIVTYNTLLNWYCKKGRYKAAIELIDYMICK-GIEADVCTYNVFIDNLCT 315

Query: 171 LHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH-YSLSIFS 229
            H    A L L  M   M+  NEVTY  L+   V +  +    +++ +  K   S +  +
Sbjct: 316 NHRSAKAYLLLKKMRKEMISPNEVTYNTLINGFVKEGKIGVAAQVFNEMSKFDLSPNCVT 375

Query: 230 LRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRL-----RSSRLDIPIPLN 284
               +     + D + A   L HM A      L +N  + G L     +  + ++   L 
Sbjct: 376 YNALIGGHCHVGDFEEALRLLDHMEAAG----LRLNEVTYGTLLNGLCKHEKFELAKRL- 430

Query: 285 ALPVMKVLRWSFSDVIHAC---GRTQNSGLAE--QLMLQMQSLGLQPSSHTYDGFIRAIV 339
            L  M+V       + +     G  +N  L E  QL+  M   G+ P   TY   I    
Sbjct: 431 -LERMRVNDMVVGHIAYTVLIDGLCKNGMLDEAVQLVGNMYKDGVNPDVITYSSLINGFC 489

Query: 340 SDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVE-CSKALELDLAEALLDQISRCTNPKPF 398
               +++  E++  M ++ L       +TL    C      ++ EA+  ++    N    
Sbjct: 490 RVGNIKSAKEIICRMYRSGLVLNKIIYSTLIYNFCQHG---NVTEAM--KVYAVMNCNGH 544

Query: 399 SAFLAACDTM-------DKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGN 450
            A    C+ +        K   A K    M R  L P+  TY+ + + +G++  P    N
Sbjct: 545 GADHFTCNVLVSSLCRDGKLGEAEKFLCHMSRIGLVPNSITYDCIINGYGSIGDPL---N 601

Query: 451 MFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLG-- 508
            FS  D          DM +     S  +  +LLK L   G + E  ++        G  
Sbjct: 602 AFSFFD----------DMIKCGQHPSFFTYGSLLKGLCKGGNLVEAKKFLNRLHYIPGAV 651

Query: 509 -TPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATY-NIMIDCCSIIRCFKSASAL 566
            +  YNT+L    ++   H A+ +F +M    + P++ TY +++   C   +   +    
Sbjct: 652 DSVMYNTLLAETCKSGNLHEAVALFDKMVQNNVLPDSYTYSSLLTGLCRKGKAVTAVCLF 711

Query: 567 VSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE 626
            + M R   +P  + YT L+  L   G    A    + +  +G   D + +N I+     
Sbjct: 712 GTAMGRGTLFPNHVMYTCLVDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSR 771

Query: 627 KGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
           +G++         M    V P+ +T + +  G+
Sbjct: 772 RGQMMKANDFFSTMRWWGVCPNLATYNILLHGF 804



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 77/364 (21%), Positives = 149/364 (40%), Gaps = 28/364 (7%)

Query: 305 RTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDS 364
           + + + L   L  +M   G+ P+  T++  I  +  +  L+    +LK M++N   P   
Sbjct: 210 KDKRTELVWSLFREMSDKGICPNVGTFNILINGLCVEGNLKKAGNLLKQMEENGFVPTIV 269

Query: 365 TIATLSVECSKALELDLAEALLD-------QISRCTNPKPFSAFLAACDTMDKPERAIKI 417
           T  TL     K      A  L+D       +   CT    ++ F+    T  +  +A  +
Sbjct: 270 TYNTLLNWYCKKGRYKAAIELIDYMICKGIEADVCT----YNVFIDNLCTNHRSAKAYLL 325

Query: 418 FAKMRQKL-RPDIRTYELLFSLF---GNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNI 473
             KMR+++  P+  TY  L + F   G +    +  N  S+ D +         +  N +
Sbjct: 326 LKKMRKEMISPNEVTYNTLINGFVKEGKIGVAAQVFNEMSKFDLSPNC------VTYNAL 379

Query: 474 QHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFK 533
              H  + +  +AL        L+ +   +   L   TY T+L+ L + ++   A  + +
Sbjct: 380 IGGHCHVGDFEEAL-------RLLDHMEAAGLRLNEVTYGTLLNGLCKHEKFELAKRLLE 432

Query: 534 QMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYG 593
           +M+   +      Y ++ID          A  LV  M +DG  P  +TY++LI      G
Sbjct: 433 RMRVNDMVVGHIAYTVLIDGLCKNGMLDEAVQLVGNMYKDGVNPDVITYSSLINGFCRVG 492

Query: 594 DFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCH 653
           +   A  ++  +   G+  + ++Y+T++   C+ G +     +   M+ N    D  TC+
Sbjct: 493 NIKSAKEIICRMYRSGLVLNKIIYSTLIYNFCQHGNVTEAMKVYAVMNCNGHGADHFTCN 552

Query: 654 FVFS 657
            + S
Sbjct: 553 VLVS 556



 Score = 73.2 bits (178), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 112/589 (19%), Positives = 228/589 (38%), Gaps = 90/589 (15%)

Query: 125  YLLMMQALCKGGYLEEASNLIYFLGERY--GIYPILPVYNSFLGACAKLHSMVHANLCLD 182
            Y +++  LCK G L+EA  L+   G  Y  G+ P +  Y+S +    ++ ++  A   + 
Sbjct: 446  YTVLIDGLCKNGMLDEAVQLV---GNMYKDGVNPDVITYSSLINGFCRVGNIKSAKEIIC 502

Query: 183  LMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDY-IKHYSLSIFSLRKFVWSFTRLR 241
             M    +  N++ Y+ L+       N++   +++       +    F+    V S  R  
Sbjct: 503  RMYRSGLVLNKIIYSTLIYNFCQHGNVTEAMKVYAVMNCNGHGADHFTCNVLVSSLCRDG 562

Query: 242  DLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIH 301
             L  A + L HM  + ++     N  +   + +    I  PLNA        +SF D + 
Sbjct: 563  KLGEAEKFLCHMSRIGLVP----NSITYDCIINGYGSIGDPLNA--------FSFFDDMI 610

Query: 302  ACGR-----TQNSGL-----------AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLR 345
             CG+     T  S L           A++ + ++  +     S  Y+  +        L 
Sbjct: 611  KCGQHPSFFTYGSLLKGLCKGGNLVEAKKFLNRLHYIPGAVDSVMYNTLLAETCKSGNLH 670

Query: 346  NGMEVLKIMQQNNLKPQDSTIATL-SVECSKALELD-------------------LAEAL 385
              + +   M QNN+ P   T ++L +  C K   +                    +   L
Sbjct: 671  EAVALFDKMVQNNVLPDSYTYSSLLTGLCRKGKAVTAVCLFGTAMGRGTLFPNHVMYTCL 730

Query: 386  LDQISRCTNPKP-------------------FSAFLAACDTMDKPERAIKIFAKMRQ-KL 425
            +D +S+  +PK                    F+A + +C    +  +A   F+ MR   +
Sbjct: 731  VDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMMKANDFFSTMRWWGV 790

Query: 426  RPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLK 485
             P++ TY +L              + FS+  +  R  ++   M R  I    ++  +L+ 
Sbjct: 791  CPNLATYNILL-------------HGFSKKQALLRYLSLYSTMMREGIFPDKLTFHSLIL 837

Query: 486  ALGAEGMIR---ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPP 542
             L   G+     +L+       T     T+N +++   E+ +  +A ++   M T G+ P
Sbjct: 838  GLSKSGIPDLGVKLLGKMIMEGTLADQFTFNILINKYSESGKMRKAFDLVNFMNTLGVFP 897

Query: 543  NAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL 602
            +  TYN + +  +    F+ ++ ++  M+ +G  P+   Y  LI  +   GD   A  L 
Sbjct: 898  DRDTYNHIFNGLNKKSAFRESTVVLHEMLENGVIPKHAQYITLINGMCRVGDIQGAFKLK 957

Query: 603  DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
            D +   G     +  + +++     G+ +    +++ M + ++ P  +T
Sbjct: 958  DEMEALGFGSHEVAESAMVRGLLHCGKTEDAMLVLDHMLRMRLLPTIAT 1006



 Score = 66.2 bits (160), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 75/354 (21%), Positives = 146/354 (41%), Gaps = 28/354 (7%)

Query: 330 TYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI 389
            +D  IR  + +  +   +E  +++     KP   T   +     K    +L  +L  ++
Sbjct: 165 VFDLLIRVYLKEGMIDYAVETFELVGLVGFKPSVYTCNMILASMVKDKRTELVWSLFREM 224

Query: 390 SR---CTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAP 445
           S    C N   F+  +         ++A  +  +M +    P I TY  L + +      
Sbjct: 225 SDKGICPNVGTFNILINGLCVEGNLKKAGNLLKQMEENGFVPTIVTYNTLLNWY------ 278

Query: 446 YEEGNMFSQVDSAKRI--NAIEMDMAR-----NNIQHSHISMKNLLKALGAEGMIRELIQ 498
            ++G   + ++    +    IE D+       +N+  +H S K  L     + M +E+I 
Sbjct: 279 CKKGRYKAAIELIDYMICKGIEADVCTYNVFIDNLCTNHRSAKAYLLL---KKMRKEMI- 334

Query: 499 YFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIR 558
                 +P    TYNT+++  V+  +   A ++F +M    + PN  TYN +I     + 
Sbjct: 335 ------SP-NEVTYNTLINGFVKEGKIGVAAQVFNEMSKFDLSPNCVTYNALIGGHCHVG 387

Query: 559 CFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYN 618
            F+ A  L+  M   G     +TY  L+  L  +  F+ A  LL+ + +  +    + Y 
Sbjct: 388 DFEEALRLLDHMEAAGLRLNEVTYGTLLNGLCKHEKFELAKRLLERMRVNDMVVGHIAYT 447

Query: 619 TILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEAL 672
            ++   C+ G +D    ++  M+++ V PD  T   + +G+   G   SA E +
Sbjct: 448 VLIDGLCKNGMLDEAVQLVGNMYKDGVNPDVITYSSLINGFCRVGNIKSAKEII 501



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 66/363 (18%), Positives = 132/363 (36%), Gaps = 53/363 (14%)

Query: 295  SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
            +F+ +I +C R      A      M+  G+ P+  TY+  +      + L   + +   M
Sbjct: 761  AFNAIIDSCSRRGQMMKANDFFSTMRWWGVCPNLATYNILLHGFSKKQALLRYLSLYSTM 820

Query: 355  QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERA 414
             +  + P   T  +L +  SK+                                  P+  
Sbjct: 821  MREGIFPDKLTFHSLILGLSKS--------------------------------GIPDLG 848

Query: 415  IKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNI 473
            +K+  KM  +    D  T+ +L      +N   E G M    D    +N + +   R+  
Sbjct: 849  VKLLGKMIMEGTLADQFTFNIL------INKYSESGKMRKAFDLVNFMNTLGVFPDRDTY 902

Query: 474  QHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAME 530
             H       +   L  +   RE   ++    ++        Y T+++ +    +   A +
Sbjct: 903  NH-------IFNGLNKKSAFRESTVVLHEMLENGVIPKHAQYITLINGMCRVGDIQGAFK 955

Query: 531  IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSM--MVRDGFYPQTMTYTALIKI 588
            +  +M+  G   +    + M+    ++ C K+  A++ +  M+R    P   T+T L+  
Sbjct: 956  LKDEMEALGFGSHEVAESAMVR--GLLHCGKTEDAMLVLDHMLRMRLLPTIATFTTLMHR 1013

Query: 589  LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
                    EAL L  ++ L G+  DV+ YN ++   C  G       + E+M    + P+
Sbjct: 1014 FCRDAKIAEALKLKGVMELCGLKLDVVAYNVLIMGMCANGDSAAAFELYEEMRHRDLCPN 1073

Query: 649  PST 651
             +T
Sbjct: 1074 ITT 1076


>gi|414880311|tpg|DAA57442.1| TPA: hypothetical protein ZEAMMB73_673693 [Zea mays]
          Length = 770

 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 127/555 (22%), Positives = 229/555 (41%), Gaps = 42/555 (7%)

Query: 102 DPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVY 161
           D  FVM     +E   I      Y ++M ALC+ G +EEA  L   + E   + P +  +
Sbjct: 233 DAAFVM--LAELERSGIQPTVVTYNVLMDALCRSGRVEEAFQLKGRMVEGR-LRPSIVTF 289

Query: 162 NSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI- 220
              +   A+       +  L  M+   +  NEV Y +L+     + + S    ++++ + 
Sbjct: 290 GILINGLARGQRFGEVDAVLQEMEGFGITPNEVIYNQLIGWHCREGHCSEALRLFDEMVS 349

Query: 221 KHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYI-NRTSEGRLRSS-RLD 278
           K    ++ +      +  +  +++ A + L  M+   M     + N      LR + RLD
Sbjct: 350 KGIKQTVVTYNLIAKALCKEGEMEHAEQILDEMLLAGMTVHCSLFNSVVAWHLRGTGRLD 409

Query: 279 IPIPLNALPVMKVLRWS----FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGF 334
           + + L    V + L+ +     + +   C R ++   AE   L +   GL  +  T +  
Sbjct: 410 VVLRLIREMVARFLKPNDAVMTACIQELCKRGKHEEAAEIWFLVLGK-GLGVNIATSNAL 468

Query: 335 IRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCT 393
           I  +     ++   +VLK M  + ++    T   +   C KA +++ A  L D  I R  
Sbjct: 469 IHGLCQGNNMKEATKVLKAMVDSGVEFDRITYNIMIQFCCKASKMEEAIQLRDDMIKRGF 528

Query: 394 NPK--PFSAFLAACDTMDKPERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGN 450
            P    F+ FL A   + K E  + +  +M+ + L+PDI TY  +              +
Sbjct: 529 KPDLFTFNTFLRAYCNLGKVEDILHLLDQMKSEGLKPDIVTYGTII-------------D 575

Query: 451 MFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSK------ 504
            + +     + N   +++ +N ++ + +    L+   G  G I + I      K      
Sbjct: 576 GYCKAKDVHKANKYLIELIKNGLRPNAVIYNALIGGYGRNGSISDAIGVLDTMKHNGIQP 635

Query: 505 TPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC-CSIIRCFKSA 563
           TP+   TYN++++ +  A     A EIF Q     I      Y I+I   C I +  ++ 
Sbjct: 636 TPI---TYNSLMYWMCHAGLVEEAKEIFAQCILKNIELGVIGYTIIIQGFCKIGKIDEAV 692

Query: 564 SALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKK 623
                M  RD   P  MTYT L+      G+ +EA  L D +   GI  D + YNT++  
Sbjct: 693 MYFKEMHYRD-IRPNKMTYTTLMYAYCKCGNKEEAFKLFDEMVSSGIVPDTVSYNTLISG 751

Query: 624 ACEKGRIDVIEFIIE 638
            CE   +D ++ I+E
Sbjct: 752 CCE---VDSLDKIVE 763



 Score = 76.3 bits (186), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 92/456 (20%), Positives = 181/456 (39%), Gaps = 54/456 (11%)

Query: 255 ALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQ 314
           AL   G+L + R   G +R      P             ++++ +I A  R      A  
Sbjct: 189 ALGCGGQLDLARKVFGEMRDGNAVAPDV-----------YTYTVMIKALCRAGEIDAAFV 237

Query: 315 LMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECS 374
           ++ +++  G+QP+  TY+  + A+     +    ++   M +  L+P   T   L    +
Sbjct: 238 MLAELERSGIQPTVVTYNVLMDALCRSGRVEEAFQLKGRMVEGRLRPSIVTFGILINGLA 297

Query: 375 KALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIR 430
           +       +A+L ++       N   ++  +           A+++F +M  K ++  + 
Sbjct: 298 RGQRFGEVDAVLQEMEGFGITPNEVIYNQLIGWHCREGHCSEALRLFDEMVSKGIKQTVV 357

Query: 431 TYELLF----------------------------SLFGNVNAPYEEGNMFSQVDSAKRIN 462
           TY L+                             SLF +V A +  G    ++D   R+ 
Sbjct: 358 TYNLIAKALCKEGEMEHAEQILDEMLLAGMTVHCSLFNSVVAWHLRGT--GRLDVVLRLI 415

Query: 463 AIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQ-YFCDSKTPLGT--PTYNTVLHSL 519
               +M    ++ +   M   ++ L   G   E  + +F      LG    T N ++H L
Sbjct: 416 ---REMVARFLKPNDAVMTACIQELCKRGKHEEAAEIWFLVLGKGLGVNIATSNALIHGL 472

Query: 520 VEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQT 579
            +      A ++ K M   G+  +  TYNIMI  C      + A  L   M++ GF P  
Sbjct: 473 CQGNNMKEATKVLKAMVDSGVEFDRITYNIMIQFCCKASKMEEAIQLRDDMIKRGFKPDL 532

Query: 580 MTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQ 639
            T+   ++   + G  ++ L+LLD +  EG+  D++ Y TI+   C+   +      + +
Sbjct: 533 FTFNTFLRAYCNLGKVEDILHLLDQMKSEGLKPDIVTYGTIIDGYCKAKDVHKANKYLIE 592

Query: 640 MHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
           + +N ++P+    + +  GY   G + S  +A+ VL
Sbjct: 593 LIKNGLRPNAVIYNALIGGY---GRNGSISDAIGVL 625



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 84/431 (19%), Positives = 170/431 (39%), Gaps = 55/431 (12%)

Query: 46  LNEESISKATQMQIV------DALCR-GERSRASHLLLNLGHAHHSLGADDFFHILNYCA 98
           L +E +SK  +  +V       ALC+ GE   A  +L  +  A  ++    F  ++ +  
Sbjct: 343 LFDEMVSKGIKQTVVTYNLIAKALCKEGEMEHAEQILDEMLLAGMTVHCSLFNSVVAWHL 402

Query: 99  RSPDPL-FVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPI 157
           R    L  V+   R M  + +  N+      +Q LCK G  EEA+  I+FL    G+   
Sbjct: 403 RGTGRLDVVLRLIREMVARFLKPNDAVMTACIQELCKRGKHEEAAE-IWFLVLGKGLGVN 461

Query: 158 LPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWE 217
           +   N+ +    + ++M  A   L  M    V  + +TY  +++       +    ++ +
Sbjct: 462 IATSNALIHGLCQGNNMKEATKVLKAMVDSGVEFDRITYNIMIQFCCKASKMEEAIQLRD 521

Query: 218 DYIKH-YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSR 276
           D IK  +   +F+   F+ ++  L  ++     L  M              SEG      
Sbjct: 522 DMIKRGFKPDLFTFNTFLRAYCNLGKVEDILHLLDQM-------------KSEG------ 562

Query: 277 LDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIR 336
                       +K    ++  +I    + ++   A + ++++   GL+P++  Y+  I 
Sbjct: 563 ------------LKPDIVTYGTIIDGYCKAKDVHKANKYLIELIKNGLRPNAVIYNALIG 610

Query: 337 AIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLS--------VECSKALELDLAEALLDQ 388
               +  + + + VL  M+ N ++P   T  +L         VE +K +    A+ +L  
Sbjct: 611 GYGRNGSISDAIGVLDTMKHNGIQPTPITYNSLMYWMCHAGLVEEAKEI---FAQCILKN 667

Query: 389 ISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYE 447
           I        ++  +     + K + A+  F +M  + +RP+  TY  L   +       E
Sbjct: 668 IE--LGVIGYTIIIQGFCKIGKIDEAVMYFKEMHYRDIRPNKMTYTTLMYAYCKCGNKEE 725

Query: 448 EGNMFSQVDSA 458
              +F ++ S+
Sbjct: 726 AFKLFDEMVSS 736



 Score = 53.1 bits (126), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 61/133 (45%), Gaps = 3/133 (2%)

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDG--FYPQTMTYTAL 585
           A + F ++ T G  P+  T NI+++          A  +   M RDG    P   TYT +
Sbjct: 164 AADAFLELSTRGASPSIKTCNILVEALGCGGQLDLARKVFGEM-RDGNAVAPDVYTYTVM 222

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           IK L   G+ D A  +L  +   GI   V+ YN ++   C  GR++    +  +M + ++
Sbjct: 223 IKALCRAGEIDAAFVMLAELERSGIQPTVVTYNVLMDALCRSGRVEEAFQLKGRMVEGRL 282

Query: 646 QPDPSTCHFVFSG 658
           +P   T   + +G
Sbjct: 283 RPSIVTFGILING 295



 Score = 49.3 bits (116), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 82/414 (19%), Positives = 158/414 (38%), Gaps = 64/414 (15%)

Query: 299 VIHACGRTQNSG---LAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           ++ AC  +   G    A    L++ + G  PS  T +  + A+     L    +V   M+
Sbjct: 148 LVRACLNSPAPGSLSCAADAFLELSTRGASPSIKTCNILVEALGCGGQLDLARKVFGEMR 207

Query: 356 QNNLKPQDSTIATLSVEC-SKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDK 410
             N    D    T+ ++   +A E+D A  +L ++ R +  +P    ++  + A     +
Sbjct: 208 DGNAVAPDVYTYTVMIKALCRAGEIDAAFVMLAELER-SGIQPTVVTYNVLMDALCRSGR 266

Query: 411 PERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
            E A ++  +M + +LRP I T+ +L +           G  F +VD      A+  +M 
Sbjct: 267 VEEAFQLKGRMVEGRLRPSIVTFGILINGLA-------RGQRFGEVD------AVLQEME 313

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP----TYNTVLHSLVEAQES 525
              I  + +    L+     EG   E ++ F D     G      TYN +  +L +  E 
Sbjct: 314 GFGITPNEVIYNQLIGWHCREGHCSEALRLF-DEMVSKGIKQTVVTYNLIAKALCKEGEM 372

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMI----------DCC------SIIRCFKSASALVSM 569
             A +I  +M   G+  + + +N ++          D         + R  K   A+++ 
Sbjct: 373 EHAEQILDEMLLAGMTVHCSLFNSVVAWHLRGTGRLDVVLRLIREMVARFLKPNDAVMTA 432

Query: 570 MVRD--------------------GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEG 609
            +++                    G      T  ALI  L    +  EA  +L  +   G
Sbjct: 433 CIQELCKRGKHEEAAEIWFLVLGKGLGVNIATSNALIHGLCQGNNMKEATKVLKAMVDSG 492

Query: 610 IPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
           +  D + YN +++  C+  +++    + + M +   +PD  T +     Y N G
Sbjct: 493 VEFDRITYNIMIQFCCKASKMEEAIQLRDDMIKRGFKPDLFTFNTFLRAYCNLG 546


>gi|242094006|ref|XP_002437493.1| hypothetical protein SORBIDRAFT_10g028090 [Sorghum bicolor]
 gi|241915716|gb|EER88860.1| hypothetical protein SORBIDRAFT_10g028090 [Sorghum bicolor]
          Length = 1039

 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 143/700 (20%), Positives = 287/700 (41%), Gaps = 59/700 (8%)

Query: 10  FQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERS 69
           +  + D +CKS            +L+ +  + T M  N  +    T   ++  LC G+  
Sbjct: 326 YNAMIDGYCKS-----------GRLKDALGIKTLMEGNGCNPDDWTYNSLIHGLCGGKPD 374

Query: 70  RASHLLLNLGHAHHSLGADDFFHILN-YC-ARSPDPLFVMETWRMMEEKEIGLNNKCYLL 127
            A  LL        S     F +I+N YC A   D    +++  +M   +  L+ + Y +
Sbjct: 375 EAEELLNGAIARGFSPTVITFTNIINGYCKAEKIDDALRVKS--IMISSKCKLDLQAYGV 432

Query: 128 MMQALCKGGYLEEASNLIYFLGERY--GIYPILPVYNSFLGACAKLHSMVHANLCLDLMD 185
           ++  L K   L+EA +    L E +  G+ P + +Y S + A  K+  +  A     L +
Sbjct: 433 LISVLIKKHRLKEAKDT---LNEIFANGLSPNVVIYTSIIDAYCKVGKVGAALEVFKLTE 489

Query: 186 SRMVGKNEVTYTELLKLAV----WQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLR 241
                 N  TY+ L+   +      K ++ + ++ ED I   +  + +    +    +  
Sbjct: 490 HEGCRPNAWTYSSLIYGLIQDQKLHKAMALITKMQEDGI---TPGVITYTTLIQGQCKKH 546

Query: 242 DLKSAYETLQHMVALAMM-GKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVI 300
           +  +A+   + M    +   +   N  ++   +S R +          + + + +++ ++
Sbjct: 547 EFDNAFRLFEMMEQNGLTPDEQAYNVLTDALCKSGRAEEAYSFLVKKGVVLTKVTYTSLV 606

Query: 301 HACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLK 360
               +  N+  A  L+ +M + G +  SHTY   ++A+   + L   + +L  M    +K
Sbjct: 607 DGFSKAGNTEFAAALIEKMVNEGCKADSHTYSVLLQALCKQKKLNEALSILDQMTLRGVK 666

Query: 361 PQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPKP--FSAFLAACDTMDKPERAIKI 417
                   +  E  K  + D A+++ ++ IS    P    ++ F+++   + + E A  +
Sbjct: 667 GNIVAYTIIISEMIKEGKHDHAKSMFNEMISSGHKPSAITYTVFISSYCKIGRIEEAGHL 726

Query: 418 FAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHS 476
             +M R  + PD+ TY +  +  G++      G M     + KR+  I+     N   + 
Sbjct: 727 IGEMERNGVAPDVVTYNVFINGCGHM------GYMDCAFSTLKRM--IDASCEPNYWTY- 777

Query: 477 HISMKNLLKA-------LGAEGM--------IRELIQYFCDSKTPLGTPTYNTVLHSLVE 521
            + +K+ LK        +   GM        + +L++            TY++++    +
Sbjct: 778 WLLLKHFLKMSLANAHYVDTSGMWNWIKLDTVWQLLERMVKHGLNPTAVTYSSIIAGFCK 837

Query: 522 AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMT 581
           A     A  +   M    I PN   Y ++I CC  I+ F+ A++ V+ M+  GF P   +
Sbjct: 838 ATRLEEACVLLDHMLGKDISPNEEIYTMLIKCCCDIKLFEKAASFVTNMIECGFQPHLES 897

Query: 582 YTALIKILLDYGDFDEALNLL-DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQM 640
           Y  LI  L D GD+D+A  L  DL+ ++   H+ + +  +     + G +D+   ++  M
Sbjct: 898 YHYLITGLCDEGDYDKAKALFCDLLEMD-YNHNEVAWKILNDGLLKAGHVDICSQLLSAM 956

Query: 641 HQNKVQPDPSTCHFVFSG-YVNCGFHNSAMEALQVLSMRM 679
                + D  T   V +  +   G + S M A  V   RM
Sbjct: 957 ENRHCRIDSETYSMVTNNIHEASGMYESYMCAPLVGQNRM 996



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 112/569 (19%), Positives = 215/569 (37%), Gaps = 67/569 (11%)

Query: 112 MMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKL 171
           MM +     N   Y L+++ LCK G + +A  L+  +  R G+ P +  YN+ +    K 
Sbjct: 278 MMLQDGCSPNLHTYTLLIRGLCKEGRIHDARVLLDEMPRR-GVVPSVWTYNAMIDGYCKS 336

Query: 172 HSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLR 231
             +  A     LM+      ++ TY  L+      K   A   +     + +S ++ +  
Sbjct: 337 GRLKDALGIKTLMEGNGCNPDDWTYNSLIHGLCGGKPDEAEELLNGAIARGFSPTVITFT 396

Query: 232 KFVWSFTRLRDLKSAYETLQHMVA------LAMMGKLYINRTSEGRLRSSRLDI-PIPLN 284
             +  + +   +  A      M++      L   G L      + RL+ ++  +  I  N
Sbjct: 397 NIINGYCKAEKIDDALRVKSIMISSKCKLDLQAYGVLISVLIKKHRLKEAKDTLNEIFAN 456

Query: 285 ALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGL 344
            L    V+   ++ +I A  +    G A ++    +  G +P++ TY   I  ++ D+ L
Sbjct: 457 GLSPNVVI---YTSIIDAYCKVGKVGAALEVFKLTEHEGCRPNAWTYSSLIYGLIQDQKL 513

Query: 345 RNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAA 404
              M ++  MQ++ + P   T  TL     K  E D                        
Sbjct: 514 HKAMALITKMQEDGITPGVITYTTLIQGQCKKHEFD------------------------ 549

Query: 405 CDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINA 463
                    A ++F  M Q  L PD + Y +L       +   EE   F           
Sbjct: 550 --------NAFRLFEMMEQNGLTPDEQAYNVLTDALCK-SGRAEEAYSF----------- 589

Query: 464 IEMDMARNNIQHSHISMKNLLKALGAEG---MIRELIQYFCDSKTPLGTPTYNTVLHSLV 520
               + +  +  + ++  +L+      G       LI+   +      + TY+ +L +L 
Sbjct: 590 ----LVKKGVVLTKVTYTSLVDGFSKAGNTEFAAALIEKMVNEGCKADSHTYSVLLQALC 645

Query: 521 EAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFK--SASALVSMMVRDGFYPQ 578
           + ++ + A+ I  QM   G+  N   Y I+I    +I+  K   A ++ + M+  G  P 
Sbjct: 646 KQKKLNEALSILDQMTLRGVKGNIVAYTIIIS--EMIKEGKHDHAKSMFNEMISSGHKPS 703

Query: 579 TMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIE 638
            +TYT  I      G  +EA +L+  +   G+  DV+ YN  +      G +D     ++
Sbjct: 704 AITYTVFISSYCKIGRIEEAGHLIGEMERNGVAPDVVTYNVFINGCGHMGYMDCAFSTLK 763

Query: 639 QMHQNKVQPDPSTCHFVFSGYVNCGFHNS 667
           +M     +P+  T   +   ++     N+
Sbjct: 764 RMIDASCEPNYWTYWLLLKHFLKMSLANA 792



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 79/374 (21%), Positives = 159/374 (42%), Gaps = 24/374 (6%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A  L+ +M   G+ PS  TY+  I        L++ + +  +M+ N   P D T  +L +
Sbjct: 307 ARVLLDEMPRRGVVPSVWTYNAMIDGYCKSGRLKDALGIKTLMEGNGCNPDDWTYNSL-I 365

Query: 372 ECSKALELDLAEALLD-QISRCTNPK--PFSAFLAACDTMDKPERAIKIFAKM-RQKLRP 427
                 + D AE LL+  I+R  +P    F+  +      +K + A+++ + M   K + 
Sbjct: 366 HGLCGGKPDEAEELLNGAIARGFSPTVITFTNIINGYCKAEKIDDALRVKSIMISSKCKL 425

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL 487
           D++ Y +L S+    +   E  +  +++ +             N +  + +   +++ A 
Sbjct: 426 DLQAYGVLISVLIKKHRLKEAKDTLNEIFA-------------NGLSPNVVIYTSIIDAY 472

Query: 488 GAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNA 544
              G +   ++ F  ++     P   TY+++++ L++ Q+ H+AM +  +M+  GI P  
Sbjct: 473 CKVGKVGAALEVFKLTEHEGCRPNAWTYSSLIYGLIQDQKLHKAMALITKMQEDGITPGV 532

Query: 545 ATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDL 604
            TY  +I        F +A  L  MM ++G  P    Y  L   L   G  +EA + L  
Sbjct: 533 ITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTDALCKSGRAEEAYSFL-- 590

Query: 605 VSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGF 664
              +G+    + Y +++    + G  +    +IE+M     + D  T   +         
Sbjct: 591 -VKKGVVLTKVTYTSLVDGFSKAGNTEFAAALIEKMVNEGCKADSHTYSVLLQALCKQKK 649

Query: 665 HNSAMEALQVLSMR 678
            N A+  L  +++R
Sbjct: 650 LNEALSILDQMTLR 663



 Score = 67.0 bits (162), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 81/189 (42%), Gaps = 5/189 (2%)

Query: 478 ISMKNLLKALGAEGMIRELIQYFC---DSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQ 534
           ++   ++ A   EG +    +YF    +S   + T T N +L       +  +A  +   
Sbjct: 184 VTYNTMIMAYCKEGSLAIAHRYFRLLRESGMEMDTYTCNALLLGYCRTGDLRKACWLLMM 243

Query: 535 MKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGD 594
           M   G   N  +Y I+I      RC + A  L+ MM++DG  P   TYT LI+ L   G 
Sbjct: 244 MPLMGCRRNEYSYTILIQGLCETRCVREALVLLLMMLQDGCSPNLHTYTLLIRGLCKEGR 303

Query: 595 FDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHF 654
             +A  LLD +   G+   V  YN ++   C+ GR+     I   M  N   PD  T + 
Sbjct: 304 IHDARVLLDEMPRRGVVPSVWTYNAMIDGYCKSGRLKDALGIKTLMEGNGCNPDDWTYNS 363

Query: 655 VFSGYVNCG 663
           +  G   CG
Sbjct: 364 LIHGL--CG 370



 Score = 45.1 bits (105), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 43/195 (22%), Positives = 78/195 (40%), Gaps = 35/195 (17%)

Query: 504 KTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI------------ 551
           +  L    YN  L SL+    +    +++ Q+   G+ P+  TYN MI            
Sbjct: 143 RLALSPKCYNLALRSLLRFDMTEHMGKLYSQLVQEGLLPDTVTYNTMIMAYCKEGSLAIA 202

Query: 552 -----------------DCCSIIRCF------KSASALVSMMVRDGFYPQTMTYTALIKI 588
                             C +++  +      + A  L+ MM   G      +YT LI+ 
Sbjct: 203 HRYFRLLRESGMEMDTYTCNALLLGYCRTGDLRKACWLLMMMPLMGCRRNEYSYTILIQG 262

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
           L +     EAL LL ++  +G   ++  Y  +++  C++GRI     ++++M +  V P 
Sbjct: 263 LCETRCVREALVLLLMMLQDGCSPNLHTYTLLIRGLCKEGRIHDARVLLDEMPRRGVVPS 322

Query: 649 PSTCHFVFSGYVNCG 663
             T + +  GY   G
Sbjct: 323 VWTYNAMIDGYCKSG 337


>gi|224126121|ref|XP_002329666.1| predicted protein [Populus trichocarpa]
 gi|222870547|gb|EEF07678.1| predicted protein [Populus trichocarpa]
          Length = 821

 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/309 (24%), Positives = 131/309 (42%), Gaps = 23/309 (7%)

Query: 396 KPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQ 454
           + ++  L +     K ERA+ IF KM +  L P + TY ++  ++G +   +        
Sbjct: 210 RAYTTILHSYSRCGKYERAVAIFEKMNESGLSPTLVTYNVMLDVYGKMGRSW-------- 261

Query: 455 VDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKT---PLGTPT 511
                +I  +  +M    +     +   ++ A G EG++ E  ++F   K+     GT T
Sbjct: 262 ----NKILGLLDEMRSKGLGFDEFTCSTVISACGREGLLDEAKEFFVGLKSQGYAPGTVT 317

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           YN +L    +A     A+ I K+M+    PP+A TYN ++        ++  +AL+  M 
Sbjct: 318 YNALLQVFGKAGIYSEALSIMKEMEDNNCPPDAVTYNELVAAYVRAGFYEEGAALIDTMT 377

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
            +G  P  +TYT +I         D+AL+L D +   G   +V  YN IL    +K + +
Sbjct: 378 ENGIKPNAVTYTTMINAYGRAAQVDKALSLYDQMKESGCAPNVCTYNAILGMLGKKSQSE 437

Query: 632 VIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKR 691
            +  I+  M  +   P+  T + + S   N G H       Q +       +    E  R
Sbjct: 438 EMMKILCDMKVDGCAPNRITWNTMLSMCGNKGMHKYVKRVFQEM-------KSCGFEPDR 490

Query: 692 SDFEDLILA 700
             F  LI A
Sbjct: 491 DTFNTLITA 499



 Score = 79.7 bits (195), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 93/420 (22%), Positives = 161/420 (38%), Gaps = 30/420 (7%)

Query: 255 ALAMMGKLYINRTSEGRLRSSRLDIPIPLN--ALPVMKVLRWSFSDVIHACGRTQNSGLA 312
           A+ +M ++ + R S+  + S   D+ IPL+  +L V      +++ ++H+  R      A
Sbjct: 176 AVELMARI-LGRESQHSIASKLFDV-IPLDDYSLDVR-----AYTTILHSYSRCGKYERA 228

Query: 313 EQLMLQMQSLGLQPSSHTYDGFIRAIVS-DRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
             +  +M   GL P+  TY+  +       R     + +L  M+   L   + T +T+  
Sbjct: 229 VAIFEKMNESGLSPTLVTYNVMLDVYGKMGRSWNKILGLLDEMRSKGLGFDEFTCSTVIS 288

Query: 372 ECSKALELDLAEAL---LDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMR-QKLRP 427
            C +   LD A+     L           ++A L           A+ I  +M      P
Sbjct: 289 ACGREGLLDEAKEFFVGLKSQGYAPGTVTYNALLQVFGKAGIYSEALSIMKEMEDNNCPP 348

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL 487
           D  TY  L + +      YEEG     +D+          M  N I+ + ++   ++ A 
Sbjct: 349 DAVTYNELVAAYVRAGF-YEEGAAL--IDT----------MTENGIKPNAVTYTTMINAY 395

Query: 488 GAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNA 544
           G    + + +  +   K     P   TYN +L  L +  +S   M+I   MK  G  PN 
Sbjct: 396 GRAAQVDKALSLYDQMKESGCAPNVCTYNAILGMLGKKSQSEEMMKILCDMKVDGCAPNR 455

Query: 545 ATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDL 604
            T+N M+  C      K    +   M   GF P   T+  LI      G   +A  + D 
Sbjct: 456 ITWNTMLSMCGNKGMHKYVKRVFQEMKSCGFEPDRDTFNTLITASGRCGSDIDAEKIYDE 515

Query: 605 VSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGF 664
           +   G    V  YN +L     +G     E +I+ M     +P  ++   + + Y   G+
Sbjct: 516 MLEAGFTPSVATYNALLNALARRGDWRTAESVIKDMKNKGFKPSETSYSLILNSYAKGGY 575



 Score = 70.9 bits (172), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 115/588 (19%), Positives = 221/588 (37%), Gaps = 85/588 (14%)

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLG-ERYGIYPILPVYNSFLGACAKL 171
           M  K +G +      ++ A  + G L+EA    +F+G +  G  P    YN+ L    K 
Sbjct: 271 MRSKGLGFDEFTCSTVISACGREGLLDEAKE--FFVGLKSQGYAPGTVTYNALLQVFGKA 328

Query: 172 HSMVHANLCLDLMDSRMVGKNEVTYTELL----KLAVWQKNLSAVHEIWEDYIKHYSLSI 227
                A   +  M+      + VTY EL+    +   +++  + +  + E+ IK  +++ 
Sbjct: 329 GIYSEALSIMKEMEDNNCPPDAVTYNELVAAYVRAGFYEEGAALIDTMTENGIKPNAVTY 388

Query: 228 FSL----------RKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRL 277
            ++           K +  + ++++   A     +   L M+GK   +      L   ++
Sbjct: 389 TTMINAYGRAAQVDKALSLYDQMKESGCAPNVCTYNAILGMLGKKSQSEEMMKILCDMKV 448

Query: 278 DIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRA 337
           D   P          R +++ ++  CG        +++  +M+S G +P   T++     
Sbjct: 449 DGCAPN---------RITWNTMLSMCGNKGMHKYVKRVFQEMKSCGFEPDRDTFN----- 494

Query: 338 IVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI---SRCTN 394
                                      T+ T S  C   ++   AE + D++       +
Sbjct: 495 ---------------------------TLITASGRCGSDID---AEKIYDEMLEAGFTPS 524

Query: 395 PKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFS 453
              ++A L A         A  +   M+ K  +P   +Y L+              N ++
Sbjct: 525 VATYNALLNALARRGDWRTAESVIKDMKNKGFKPSETSYSLIL-------------NSYA 571

Query: 454 QVDSAKRINAIEMDMARNNIQHSHISMKNLL----KALGAEGMIRELIQYFCDSKTPLGT 509
           +    K IN IE D+   +I  S + ++ L+    K     GM R           P   
Sbjct: 572 KGGYVKGINRIEKDIYDGHIFPSWMLLRTLILANFKCRALAGMERAFQALQKHGYKP-DL 630

Query: 510 PTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCS-IIRCFKSASALVS 568
             +N++L          RA EI   ++ CG+ P+  TYN ++D  +    C+K A  ++ 
Sbjct: 631 VVFNSMLSMFSRKNMHDRAHEIMHLIQECGLQPDLVTYNSLMDLYARGGECWK-AEEILR 689

Query: 569 MMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
            +   G     ++Y  +IK     G   EAL  L  +   GI   ++ YNT +     KG
Sbjct: 690 ELQNSGDKSDLISYNTVIKGFCRQGLMHEALRTLSEMISRGIRPCIVTYNTFVGGYAAKG 749

Query: 629 RIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
               I+ ++  M ++  +P+  T   V  GY        AM+ +  ++
Sbjct: 750 MFAEIDEVLSYMTKHDCRPNELTYKIVVDGYCKAKKFKEAMDFVSTIT 797


>gi|115474441|ref|NP_001060817.1| Os08g0110200 [Oryza sativa Japonica Group]
 gi|42408384|dbj|BAD09535.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113622786|dbj|BAF22731.1| Os08g0110200 [Oryza sativa Japonica Group]
 gi|125601950|gb|EAZ41275.1| hypothetical protein OsJ_25782 [Oryza sativa Japonica Group]
          Length = 798

 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 91/403 (22%), Positives = 165/403 (40%), Gaps = 34/403 (8%)

Query: 295 SFSDVIHA-CGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           +FS ++   C   + S   +  + +M +LG  P++ +Y+  ++ +  +   +  + +L  
Sbjct: 133 TFSPLLKGLCHDKRTSDAMDIALRRMPALGCTPNAFSYNILLKGLCDENRSQQALHLLHT 192

Query: 354 MQQNNLK----PQDSTIATLSVECSKALELDLAEALLDQI---SRCTNPKPFSAFLAACD 406
           M  ++ +    P   +  T+     +  +LD A  L D++       N   ++  L    
Sbjct: 193 MMADDTRGGCPPDVVSYTTVINGLLREGQLDKAYCLFDEMLDQGMSPNCITYNCLLHGYC 252

Query: 407 TMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMF-SQVDSAKRINA- 463
           +  KP+ AI IF KM R  + PD+ TY  L           E   +F S V    + ++ 
Sbjct: 253 SSGKPKEAIGIFRKMCRDGVEPDVVTYNTLMVYLCKNGRSMEARKVFDSMVKKGHKPDSS 312

Query: 464 ---------------IEMD-----MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDS 503
                          ++M      M RN  Q  H     L+ A    GM+ E +  F   
Sbjct: 313 IYGTLLHGYATEGYLVQMHQLLDVMVRNGTQPDHYIFNILIGAYAKHGMVDEAMLAFSKM 372

Query: 504 KTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCF 560
           +     P   TY TV+ +L    +   AM  F ++ + G+ PN   +  +I        +
Sbjct: 373 RQQGLHPNIVTYGTVMDALCRVGKVDDAMSQFDRLISEGLTPNGVVFRTLIHGLCACDKW 432

Query: 561 KSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTI 620
             A  L   M+  G  P T+ +  L+  L   G    A N+ DL+    +  DV+ Y T+
Sbjct: 433 DKAEELAVEMIGRGICPNTIFFNTLLNHLCKEGMVTRAKNIFDLMVRVDVQCDVITYTTL 492

Query: 621 LKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
           +   C  G++D    ++E M  + V+P+  T + + +GY   G
Sbjct: 493 IDGYCLDGKVDEATKLLEGMVLDGVKPNEVTYNTIINGYCKNG 535



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 112/546 (20%), Positives = 218/546 (39%), Gaps = 42/546 (7%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFL---GERYGIYPILPVYNSFLGACAKLHSMVHANLCL 181
           Y ++++ LC     ++A +L++ +     R G  P +  Y + +    +   +  A    
Sbjct: 170 YNILLKGLCDENRSQQALHLLHTMMADDTRGGCPPDVVSYTTVINGLLREGQLDKAYCLF 229

Query: 182 DLMDSRMVGKNEVTYTELL----KLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSF 237
           D M  + +  N +TY  LL         ++ +    ++  D ++   ++  +L  ++   
Sbjct: 230 DEMLDQGMSPNCITYNCLLHGYCSSGKPKEAIGIFRKMCRDGVEPDVVTYNTLMVYLCKN 289

Query: 238 TRLRDLKSAYETL---QHMVALAMMGKLYINRTSEGRLRSSR--LDIPIPLNALPVMKVL 292
            R  + +  ++++    H    ++ G L     +EG L      LD+ +     P     
Sbjct: 290 GRSMEARKVFDSMVKKGHKPDSSIYGTLLHGYATEGYLVQMHQLLDVMVRNGTQPD---- 345

Query: 293 RWSFSDVIHACGRTQNSGLAEQLML---QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGME 349
            + F+ +I   G     G+ ++ ML   +M+  GL P+  TY   + A+     + + M 
Sbjct: 346 HYIFNILI---GAYAKHGMVDEAMLAFSKMRQQGLHPNIVTYGTVMDALCRVGKVDDAMS 402

Query: 350 VLKIMQQNNLKPQDSTIATLSVECSKALELDLAEAL-LDQISR--CTNPKPFSAFLAACD 406
               +    L P      TL        + D AE L ++ I R  C N   F+  L    
Sbjct: 403 QFDRLISEGLTPNGVVFRTLIHGLCACDKWDKAEELAVEMIGRGICPNTIFFNTLLNHLC 462

Query: 407 TMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIE 465
                 RA  IF  M R  ++ D+ TY  L   +           +  +VD A ++  +E
Sbjct: 463 KEGMVTRAKNIFDLMVRVDVQCDVITYTTLIDGY----------CLDGKVDEATKL--LE 510

Query: 466 MDMARNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEA 522
             M  + ++ + ++   ++      G I +   L +         G   Y+T+LH L + 
Sbjct: 511 -GMVLDGVKPNEVTYNTIINGYCKNGRIEDACSLFRQMASKGVNPGIVIYSTILHGLFQT 569

Query: 523 QESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTY 582
           +    A E++  M  CGI     TYNI++       C   A  +   +    F+ Q  T+
Sbjct: 570 RRIAAAKELYLWMIKCGIKLPIGTYNIILQGLCQNNCTDDALRMFHNLCLIDFHLQNRTF 629

Query: 583 TALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642
             +I  LL  G  DEA +L   +   G+  +V+ Y  ++K   E+G ++ ++ +   + +
Sbjct: 630 NIMIDALLKGGRHDEAKDLFASLLARGLVPNVVTYWLMMKSLIEQGLLEELDDLFLSLEK 689

Query: 643 NKVQPD 648
           N    D
Sbjct: 690 NGCTAD 695



 Score = 66.6 bits (161), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 79/181 (43%)

Query: 506 PLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASA 565
           P    +Y TV++ L+   +  +A  +F +M   G+ PN  TYN ++         K A  
Sbjct: 203 PPDVVSYTTVINGLLREGQLDKAYCLFDEMLDQGMSPNCITYNCLLHGYCSSGKPKEAIG 262

Query: 566 LVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKAC 625
           +   M RDG  P  +TY  L+  L   G   EA  + D +  +G   D  +Y T+L    
Sbjct: 263 IFRKMCRDGVEPDVVTYNTLMVYLCKNGRSMEARKVFDSMVKKGHKPDSSIYGTLLHGYA 322

Query: 626 EKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVS 685
            +G +  +  +++ M +N  QPD    + +   Y   G  + AM A   +  + L   + 
Sbjct: 323 TEGYLVQMHQLLDVMVRNGTQPDHYIFNILIGAYAKHGMVDEAMLAFSKMRQQGLHPNIV 382

Query: 686 T 686
           T
Sbjct: 383 T 383



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 70/312 (22%), Positives = 119/312 (38%), Gaps = 19/312 (6%)

Query: 373 CSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKL--RP 427
           CS+A  LDLA A L ++ R         FS  L       +   A+ I  +    L   P
Sbjct: 106 CSRAGHLDLAFAALGRVIRTGWTAQAITFSPLLKGLCHDKRTSDAMDIALRRMPALGCTP 165

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL 487
           +  +Y +L     + N   +  ++         ++ +  D  R       +S   ++  L
Sbjct: 166 NAFSYNILLKGLCDENRSQQALHL---------LHTMMADDTRGGCPPDVVSYTTVINGL 216

Query: 488 GAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNA 544
             EG + +   L     D        TYN +LH    + +   A+ IF++M   G+ P+ 
Sbjct: 217 LREGQLDKAYCLFDEMLDQGMSPNCITYNCLLHGYCSSGKPKEAIGIFRKMCRDGVEPDV 276

Query: 545 ATYN-IMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLD 603
            TYN +M+  C   R  + A  +   MV+ G  P +  Y  L+      G   +   LLD
Sbjct: 277 VTYNTLMVYLCKNGRSME-ARKVFDSMVKKGHKPDSSIYGTLLHGYATEGYLVQMHQLLD 335

Query: 604 LVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
           ++   G   D  ++N ++    + G +D       +M Q  + P+  T   V       G
Sbjct: 336 VMVRNGTQPDHYIFNILIGAYAKHGMVDEAMLAFSKMRQQGLHPNIVTYGTVMDALCRVG 395

Query: 664 FHNSAMEALQVL 675
             + AM     L
Sbjct: 396 KVDDAMSQFDRL 407



 Score = 60.1 bits (144), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 65/301 (21%), Positives = 120/301 (39%), Gaps = 26/301 (8%)

Query: 392 CTNPKPFSAFL---AACDTMDKPERAIKIFAKM-----RQKLRPDIRTYELLFSLFGNVN 443
           CT P  FS  +     CD  ++ ++A+ +   M     R    PD+ +Y  +      +N
Sbjct: 163 CT-PNAFSYNILLKGLCDE-NRSQQALHLLHTMMADDTRGGCPPDVVSYTTV------IN 214

Query: 444 APYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYF--- 500
               EG    Q+D A     +  +M    +  + I+   LL    + G  +E I  F   
Sbjct: 215 GLLREG----QLDKAY---CLFDEMLDQGMSPNCITYNCLLHGYCSSGKPKEAIGIFRKM 267

Query: 501 CDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCF 560
           C         TYNT++  L +   S  A ++F  M   G  P+++ Y  ++   +     
Sbjct: 268 CRDGVEPDVVTYNTLMVYLCKNGRSMEARKVFDSMVKKGHKPDSSIYGTLLHGYATEGYL 327

Query: 561 KSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTI 620
                L+ +MVR+G  P    +  LI     +G  DEA+     +  +G+  +++ Y T+
Sbjct: 328 VQMHQLLDVMVRNGTQPDHYIFNILIGAYAKHGMVDEAMLAFSKMRQQGLHPNIVTYGTV 387

Query: 621 LKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRML 680
           +   C  G++D      +++    + P+      +  G   C   + A E    +  R +
Sbjct: 388 MDALCRVGKVDDAMSQFDRLISEGLTPNGVVFRTLIHGLCACDKWDKAEELAVEMIGRGI 447

Query: 681 C 681
           C
Sbjct: 448 C 448



 Score = 42.0 bits (97), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 81/208 (38%), Gaps = 53/208 (25%)

Query: 518 SLVEAQESHRAMEIFKQMKTCGIPPNA--ATYNIMIDCCSIIRCFKSASALVSMMVRDGF 575
           S V  +    A+ +F +M      P A   TY+I+I CCS       A A +  ++R G+
Sbjct: 74  SAVARESPAVALSLFNRM------PRADLCTYSIVIGCCSRAGHLDLAFAALGRVIRTGW 127

Query: 576 YPQTMT------------------------------------YTALIKILLDYGDFDEAL 599
             Q +T                                    Y  L+K L D     +AL
Sbjct: 128 TAQAITFSPLLKGLCHDKRTSDAMDIALRRMPALGCTPNAFSYNILLKGLCDENRSQQAL 187

Query: 600 NLLDLVSLE----GIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFV 655
           +LL  +  +    G P DV+ Y T++     +G++D    + ++M    + P+  T + +
Sbjct: 188 HLLHTMMADDTRGGCPPDVVSYTTVINGLLREGQLDKAYCLFDEMLDQGMSPNCITYNCL 247

Query: 656 FSGYVNCGFHNSAMEALQVLSMRMLCEE 683
             GY + G      EA+ +   R +C +
Sbjct: 248 LHGYCSSG---KPKEAIGIF--RKMCRD 270


>gi|414885890|tpg|DAA61904.1| TPA: hypothetical protein ZEAMMB73_278794, partial [Zea mays]
          Length = 149

 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 45/91 (49%), Positives = 62/91 (68%)

Query: 50  SISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMET 109
           S  +  Q ++V+AL RG+R RAS +L N  H   SL  +DF +IL YCA +PDPLFVMET
Sbjct: 54  SFVRPMQSEVVNALRRGDRQRASLILSNFHHTKESLTKEDFSYILEYCAEAPDPLFVMET 113

Query: 110 WRMMEEKEIGLNNKCYLLMMQALCKGGYLEE 140
             +MEEK IG++   Y  +++AL +GGY +E
Sbjct: 114 LELMEEKAIGMSKSIYRYVIRALSRGGYAKE 144


>gi|359493281|ref|XP_002272603.2| PREDICTED: pentatricopeptide repeat-containing protein At5g55840-like
            [Vitis vinifera]
          Length = 2037

 Score = 98.2 bits (243), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 133/619 (21%), Positives = 239/619 (38%), Gaps = 40/619 (6%)

Query: 60   VDALCRGERSRASHLLLN-LGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEI 118
            +D LC   RS  ++LLL  +     S     +  ++N   +        + +  M + ++
Sbjct: 1061 IDNLCTNHRSAKAYLLLKKMRKEMISPNEVTYNTLINGFVKEGKIGVAAQVFNEMSKFDL 1120

Query: 119  GLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHAN 178
              N   Y  ++   C  G  EEA  L+  + E  G+      Y + L    K      A 
Sbjct: 1121 SPNCVTYNALIGGHCHVGDFEEALRLLDHM-EAAGLRLNEVTYGTLLNGLCKHEKFELAK 1179

Query: 179  LCLDLMDSRMVGKNEVTYTELL----KLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFV 234
              L+ M    +    + YT L+    K  +  + +  V  +++D +      + +    +
Sbjct: 1180 RLLERMRVNDMVVGHIAYTVLIDGLCKNGMLDEAVQLVGNMYKDGVNP---DVITYSSLI 1236

Query: 235  WSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVL-- 292
              F R+ ++KSA E +  M        L +N+     L  +         A+ V  V+  
Sbjct: 1237 NGFCRVGNIKSAKEIICRMYR----SGLVLNKIIYSTLIYNFCQHGNVTEAMKVYAVMNC 1292

Query: 293  ------RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRN 346
                   ++ + ++ +  R    G AE+ +  M  +GL P+S TYD  I    S     N
Sbjct: 1293 NGHGADHFTCNVLVSSLCRDGKLGEAEKFLCHMSRIGLVPNSITYDCIINGYGSIGDPLN 1352

Query: 347  GMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ---ISRCTNPKPFSAFLA 403
                   M +    P   T  +L     K   L  A+  L++   I    +   ++  LA
Sbjct: 1353 AFSFFDDMIKCGQHPSFFTYGSLLKGLCKGGNLVEAKKFLNRLHYIPGAVDSVMYNTLLA 1412

Query: 404  ACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRIN 462
                      A+ +F KM Q  + PD  TY  L +             +  +  +   + 
Sbjct: 1413 ETCKSGNLHEAVALFDKMVQNNVLPDSYTYSSLLT------------GLCRKGKAVTAVC 1460

Query: 463  AIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYF---CDSKTPLGTPTYNTVLHSL 519
                 M R  +  +H+    L+  L   G  +    +F       T   T  +N ++ S 
Sbjct: 1461 LFGTAMGRGTLFPNHVMYTCLVDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSC 1520

Query: 520  VEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQT 579
                +  +A + F  M+  G+ PN ATYNI++   S  +      +L S M+R+G +P  
Sbjct: 1521 SRRGQMMKANDFFSTMRWWGVCPNLATYNILLHGFSKKQALLRYLSLYSTMMREGIFPDK 1580

Query: 580  MTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQ 639
            +T+ +LI  L   G  D  + LL  + +EG   D   +N ++ K  E G++     ++  
Sbjct: 1581 LTFHSLILGLSKSGIPDLGVKLLGKMIMEGTLADQFTFNILINKYSESGKMRKAFDLVNF 1640

Query: 640  MHQNKVQPDPSTCHFVFSG 658
            M+   V PD  T + +F+G
Sbjct: 1641 MNTLGVFPDRDTYNHIFNG 1659



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 124/576 (21%), Positives = 217/576 (37%), Gaps = 55/576 (9%)

Query: 111  RMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAK 170
            + MEE         Y  ++   CK G  + A  LI ++  + GI   +  YN F+     
Sbjct: 1008 KQMEENGFVPTIVTYNTLLNWYCKKGRYKAAIELIDYMICK-GIEADVCTYNVFIDNLCT 1066

Query: 171  LHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH-YSLSIFS 229
             H    A L L  M   M+  NEVTY  L+   V +  +    +++ +  K   S +  +
Sbjct: 1067 NHRSAKAYLLLKKMRKEMISPNEVTYNTLINGFVKEGKIGVAAQVFNEMSKFDLSPNCVT 1126

Query: 230  LRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRL-----------RSSRLD 278
                +     + D + A   L HM A      L +N  + G L            + RL 
Sbjct: 1127 YNALIGGHCHVGDFEEALRLLDHMEA----AGLRLNEVTYGTLLNGLCKHEKFELAKRLL 1182

Query: 279  IPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAE--QLMLQMQSLGLQPSSHTYDGFIR 336
              + +N + V  +      D     G  +N  L E  QL+  M   G+ P   TY   I 
Sbjct: 1183 ERMRVNDMVVGHIAYTVLID-----GLCKNGMLDEAVQLVGNMYKDGVNPDVITYSSLIN 1237

Query: 337  AIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVE-CSKALELDLAEALLDQISRCTNP 395
                   +++  E++  M ++ L       +TL    C      ++ EA+  ++    N 
Sbjct: 1238 GFCRVGNIKSAKEIICRMYRSGLVLNKIIYSTLIYNFCQHG---NVTEAM--KVYAVMNC 1292

Query: 396  KPFSAFLAACDTM-------DKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYE 447
                A    C+ +        K   A K    M R  L P+  TY+ + + +G++  P  
Sbjct: 1293 NGHGADHFTCNVLVSSLCRDGKLGEAEKFLCHMSRIGLVPNSITYDCIINGYGSIGDPL- 1351

Query: 448  EGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPL 507
              N FS  D          DM +     S  +  +LLK L   G + E  ++        
Sbjct: 1352 --NAFSFFD----------DMIKCGQHPSFFTYGSLLKGLCKGGNLVEAKKFLNRLHYIP 1399

Query: 508  G---TPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATY-NIMIDCCSIIRCFKSA 563
            G   +  YNT+L    ++   H A+ +F +M    + P++ TY +++   C   +   + 
Sbjct: 1400 GAVDSVMYNTLLAETCKSGNLHEAVALFDKMVQNNVLPDSYTYSSLLTGLCRKGKAVTAV 1459

Query: 564  SALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKK 623
                + M R   +P  + YT L+  L   G    A    + +  +G   D + +N I+  
Sbjct: 1460 CLFGTAMGRGTLFPNHVMYTCLVDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDS 1519

Query: 624  ACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
               +G++         M    V P+ +T + +  G+
Sbjct: 1520 CSRRGQMMKANDFFSTMRWWGVCPNLATYNILLHGF 1555



 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 91/197 (46%), Gaps = 3/197 (1%)

Query: 483  LLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCG 539
            L++    EGMI   ++ F         P   T N +L S+V+ + +     +F++M   G
Sbjct: 920  LIRVYLKEGMIDYAVETFELVGLVGFKPSVYTCNMILASMVKDKRTELVWSLFREMSDKG 979

Query: 540  IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEAL 599
            I PN  T+NI+I+   +    K A  L+  M  +GF P  +TY  L+      G +  A+
Sbjct: 980  ICPNVGTFNILINGLCVEGNLKKAGNLLKQMEENGFVPTIVTYNTLLNWYCKKGRYKAAI 1039

Query: 600  NLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
             L+D +  +GI  DV  YN  +   C   R      ++++M +  + P+  T + + +G+
Sbjct: 1040 ELIDYMICKGIEADVCTYNVFIDNLCTNHRSAKAYLLLKKMRKEMISPNEVTYNTLINGF 1099

Query: 660  VNCGFHNSAMEALQVLS 676
            V  G    A +    +S
Sbjct: 1100 VKEGKIGVAAQVFNEMS 1116



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 77/364 (21%), Positives = 149/364 (40%), Gaps = 28/364 (7%)

Query: 305  RTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDS 364
            + + + L   L  +M   G+ P+  T++  I  +  +  L+    +LK M++N   P   
Sbjct: 961  KDKRTELVWSLFREMSDKGICPNVGTFNILINGLCVEGNLKKAGNLLKQMEENGFVPTIV 1020

Query: 365  TIATLSVECSKALELDLAEALLD-------QISRCTNPKPFSAFLAACDTMDKPERAIKI 417
            T  TL     K      A  L+D       +   CT    ++ F+    T  +  +A  +
Sbjct: 1021 TYNTLLNWYCKKGRYKAAIELIDYMICKGIEADVCT----YNVFIDNLCTNHRSAKAYLL 1076

Query: 418  FAKMRQKL-RPDIRTYELLFSLF---GNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNI 473
              KMR+++  P+  TY  L + F   G +    +  N  S+ D +         +  N +
Sbjct: 1077 LKKMRKEMISPNEVTYNTLINGFVKEGKIGVAAQVFNEMSKFDLSPNC------VTYNAL 1130

Query: 474  QHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFK 533
               H  + +  +AL        L+ +   +   L   TY T+L+ L + ++   A  + +
Sbjct: 1131 IGGHCHVGDFEEAL-------RLLDHMEAAGLRLNEVTYGTLLNGLCKHEKFELAKRLLE 1183

Query: 534  QMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYG 593
            +M+   +      Y ++ID          A  LV  M +DG  P  +TY++LI      G
Sbjct: 1184 RMRVNDMVVGHIAYTVLIDGLCKNGMLDEAVQLVGNMYKDGVNPDVITYSSLINGFCRVG 1243

Query: 594  DFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCH 653
            +   A  ++  +   G+  + ++Y+T++   C+ G +     +   M+ N    D  TC+
Sbjct: 1244 NIKSAKEIICRMYRSGLVLNKIIYSTLIYNFCQHGNVTEAMKVYAVMNCNGHGADHFTCN 1303

Query: 654  FVFS 657
             + S
Sbjct: 1304 VLVS 1307



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 113/601 (18%), Positives = 232/601 (38%), Gaps = 90/601 (14%)

Query: 113  MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERY--GIYPILPVYNSFLGACAK 170
            M   ++ + +  Y +++  LCK G L+EA  L+   G  Y  G+ P +  Y+S +    +
Sbjct: 1185 MRVNDMVVGHIAYTVLIDGLCKNGMLDEAVQLV---GNMYKDGVNPDVITYSSLINGFCR 1241

Query: 171  LHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDY-IKHYSLSIFS 229
            + ++  A   +  M    +  N++ Y+ L+       N++   +++       +    F+
Sbjct: 1242 VGNIKSAKEIICRMYRSGLVLNKIIYSTLIYNFCQHGNVTEAMKVYAVMNCNGHGADHFT 1301

Query: 230  LRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVM 289
                V S  R   L  A + L HM  + ++     N  +   + +    I  PLNA    
Sbjct: 1302 CNVLVSSLCRDGKLGEAEKFLCHMSRIGLVP----NSITYDCIINGYGSIGDPLNA---- 1353

Query: 290  KVLRWSFSDVIHACGR-----TQNSGL-----------AEQLMLQMQSLGLQPSSHTYDG 333
                +SF D +  CG+     T  S L           A++ + ++  +     S  Y+ 
Sbjct: 1354 ----FSFFDDMIKCGQHPSFFTYGSLLKGLCKGGNLVEAKKFLNRLHYIPGAVDSVMYNT 1409

Query: 334  FIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVE-CSKALELD------------ 380
             +        L   + +   M QNN+ P   T ++L    C K   +             
Sbjct: 1410 LLAETCKSGNLHEAVALFDKMVQNNVLPDSYTYSSLLTGLCRKGKAVTAVCLFGTAMGRG 1469

Query: 381  -------LAEALLDQISRCTNPKP-------------------FSAFLAACDTMDKPERA 414
                   +   L+D +S+  +PK                    F+A + +C    +  +A
Sbjct: 1470 TLFPNHVMYTCLVDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMMKA 1529

Query: 415  IKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNI 473
               F+ MR   + P++ TY +L              + FS+  +  R  ++   M R  I
Sbjct: 1530 NDFFSTMRWWGVCPNLATYNILL-------------HGFSKKQALLRYLSLYSTMMREGI 1576

Query: 474  QHSHISMKNLLKALGAEGMIR---ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAME 530
                ++  +L+  L   G+     +L+       T     T+N +++   E+ +  +A +
Sbjct: 1577 FPDKLTFHSLILGLSKSGIPDLGVKLLGKMIMEGTLADQFTFNILINKYSESGKMRKAFD 1636

Query: 531  IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590
            +   M T G+ P+  TYN + +  +    F+ ++ ++  M+ +G  P+   Y  LI  + 
Sbjct: 1637 LVNFMNTLGVFPDRDTYNHIFNGLNKKSAFRESTVVLHEMLENGVIPKHAQYITLINGMC 1696

Query: 591  DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650
              GD   A  L D +   G     +  + +++     G+ +    +++ M + ++ P  +
Sbjct: 1697 RVGDIQGAFKLKDEMEALGFGSHEVAESAMVRGLLHCGKTEDAMLVLDHMLRMRLLPTIA 1756

Query: 651  T 651
            T
Sbjct: 1757 T 1757



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 74/350 (21%), Positives = 143/350 (40%), Gaps = 20/350 (5%)

Query: 330  TYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI 389
             +D  IR  + +  +   +E  +++     KP   T   +     K    +L  +L  ++
Sbjct: 916  VFDLLIRVYLKEGMIDYAVETFELVGLVGFKPSVYTCNMILASMVKDKRTELVWSLFREM 975

Query: 390  SR---CTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLF---GNV 442
            S    C N   F+  +         ++A  +  +M +    P I TY  L + +   G  
Sbjct: 976  SDKGICPNVGTFNILINGLCVEGNLKKAGNLLKQMEENGFVPTIVTYNTLLNWYCKKGRY 1035

Query: 443  NAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCD 502
             A  E  +    +      +    ++  +N+  +H S K  L     + M +E+I     
Sbjct: 1036 KAAIELIDY--MICKGIEADVCTYNVFIDNLCTNHRSAKAYLLL---KKMRKEMI----- 1085

Query: 503  SKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKS 562
              +P    TYNT+++  V+  +   A ++F +M    + PN  TYN +I     +  F+ 
Sbjct: 1086 --SP-NEVTYNTLINGFVKEGKIGVAAQVFNEMSKFDLSPNCVTYNALIGGHCHVGDFEE 1142

Query: 563  ASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILK 622
            A  L+  M   G     +TY  L+  L  +  F+ A  LL+ + +  +    + Y  ++ 
Sbjct: 1143 ALRLLDHMEAAGLRLNEVTYGTLLNGLCKHEKFELAKRLLERMRVNDMVVGHIAYTVLID 1202

Query: 623  KACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEAL 672
              C+ G +D    ++  M+++ V PD  T   + +G+   G   SA E +
Sbjct: 1203 GLCKNGMLDEAVQLVGNMYKDGVNPDVITYSSLINGFCRVGNIKSAKEII 1252



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 66/363 (18%), Positives = 132/363 (36%), Gaps = 53/363 (14%)

Query: 295  SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
            +F+ +I +C R      A      M+  G+ P+  TY+  +      + L   + +   M
Sbjct: 1512 AFNAIIDSCSRRGQMMKANDFFSTMRWWGVCPNLATYNILLHGFSKKQALLRYLSLYSTM 1571

Query: 355  QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERA 414
             +  + P   T  +L +  SK+                                  P+  
Sbjct: 1572 MREGIFPDKLTFHSLILGLSKS--------------------------------GIPDLG 1599

Query: 415  IKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNI 473
            +K+  KM  +    D  T+ +L      +N   E G M    D    +N + +   R+  
Sbjct: 1600 VKLLGKMIMEGTLADQFTFNIL------INKYSESGKMRKAFDLVNFMNTLGVFPDRDTY 1653

Query: 474  QHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAME 530
             H       +   L  +   RE   ++    ++        Y T+++ +    +   A +
Sbjct: 1654 NH-------IFNGLNKKSAFRESTVVLHEMLENGVIPKHAQYITLINGMCRVGDIQGAFK 1706

Query: 531  IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSM--MVRDGFYPQTMTYTALIKI 588
            +  +M+  G   +    + M+    ++ C K+  A++ +  M+R    P   T+T L+  
Sbjct: 1707 LKDEMEALGFGSHEVAESAMVR--GLLHCGKTEDAMLVLDHMLRMRLLPTIATFTTLMHR 1764

Query: 589  LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
                    EAL L  ++ L G+  DV+ YN ++   C  G       + E+M    + P+
Sbjct: 1765 FCRDAKIAEALKLKGVMELCGLKLDVVAYNVLIMGMCANGDSAAAFELYEEMRHRDLCPN 1824

Query: 649  PST 651
             +T
Sbjct: 1825 ITT 1827


>gi|356524758|ref|XP_003530995.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17140-like [Glycine max]
          Length = 875

 Score = 98.2 bits (243), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 93/404 (23%), Positives = 169/404 (41%), Gaps = 20/404 (4%)

Query: 272 LRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTY 331
            +S R   P    +LP+  +L       + +  R    G    L   M +  + P ++T+
Sbjct: 101 FKSLRAQFPSLSPSLPLYNLL-------LRSTLRHHRPGFVSWLYSDMLAARVAPQTYTF 153

Query: 332 DGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR 391
           +  I ++   R   + +++ + M Q    P + T+  L     +A  +  A  L++  + 
Sbjct: 154 NLLIHSLCESRAFDHALQLFEKMPQKGCCPNEFTLGILVRGLCRAGLVKQALELVNNNNS 213

Query: 392 C--TNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEE 448
           C   N   ++  ++     +    A ++  +M +  + PD+ T+    S         E 
Sbjct: 214 CRIANRVVYNTLVSRFCREEMNNEAERLVERMNELGVLPDVVTFNSRISALCRAGKVMEA 273

Query: 449 GNMFS--QVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTP 506
             +F   Q+D+       E+ + R N+   ++ +K   K  G  G  R L++        
Sbjct: 274 SRIFRDMQMDA-------ELGLPRPNVVTFNLMLKGFCKH-GMMGDARGLVETMKKVGNF 325

Query: 507 LGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASAL 566
                YN  L  L+   E   A  +  +M   GI PNA TYNIM+D          A  L
Sbjct: 326 DSLECYNIWLMGLLRNGELLEARLVLDEMVAKGIEPNAYTYNIMMDGLCRNHMLSDARGL 385

Query: 567 VSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE 626
           + +M+R+G YP T+ Y+ L+      G   EA ++L  +   G   +    NT+L    +
Sbjct: 386 MDLMMRNGVYPDTVAYSTLLHGYCSRGKVFEAKSVLHEMIRNGCQPNTYTCNTLLHSLWK 445

Query: 627 KGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAME 670
           +GR    E ++++M++   QPD  TC+ V +G    G  + A E
Sbjct: 446 EGRTLEAEEMLQKMNEKCYQPDTVTCNIVVNGLCRNGELDKASE 489



 Score = 59.3 bits (142), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 76/372 (20%), Positives = 149/372 (40%), Gaps = 37/372 (9%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL-S 370
           A  ++ +M + G++P+++TY+  +  +  +  L +   ++ +M +N + P     +TL  
Sbjct: 347 ARLVLDEMVAKGIEPNAYTYNIMMDGLCRNHMLSDARGLMDLMMRNGVYPDTVAYSTLLH 406

Query: 371 VECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTM-------DKPERAIKIFAKMRQ 423
             CS+    +    L + I     P  ++     C+T+        +   A ++  KM +
Sbjct: 407 GYCSRGKVFEAKSVLHEMIRNGCQPNTYT-----CNTLLHSLWKEGRTLEAEEMLQKMNE 461

Query: 424 K-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKN 482
           K  +PD  T  ++      VN     G    ++D A  I +        ++   + S  +
Sbjct: 462 KCYQPDTVTCNIV------VNGLCRNG----ELDKASEIVSEMWTNGPTSLDKGN-SFAS 510

Query: 483 LLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPP 542
           L+ ++           +   +  P G  TY T+++ L +      A + F +M    + P
Sbjct: 511 LINSI-----------HNVSNCLPDGI-TYTTLINGLCKVGRLEEAKKKFIEMLAKNLRP 558

Query: 543 NAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL 602
           ++ TY+  I          SA  ++  M R+G      TY ALI  L       E   L 
Sbjct: 559 DSVTYDTFIWSFCKQGKISSAFRVLKDMERNGCSKTLQTYNALILGLGSNNQIFEIYGLK 618

Query: 603 DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNC 662
           D +  +GI  D+  YN I+   CE G+      ++ +M    + P+ S+   +   +   
Sbjct: 619 DEMKEKGISPDICTYNNIITCLCEGGKAKDAISLLHEMLDKGISPNVSSFKILIKAFSKS 678

Query: 663 GFHNSAMEALQV 674
                A E  +V
Sbjct: 679 SDFKVACELFEV 690



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 62/307 (20%), Positives = 112/307 (36%), Gaps = 46/307 (14%)

Query: 421 MRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISM 480
           MR  + PD   Y  L   + +    +E  ++  +             M RN  Q +  + 
Sbjct: 390 MRNGVYPDTVAYSTLLHGYCSRGKVFEAKSVLHE-------------MIRNGCQPNTYTC 436

Query: 481 KNLLKALGAEGMI---RELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKT 537
             LL +L  EG      E++Q   +      T T N V++ L    E  +A EI  +M T
Sbjct: 437 NTLLHSLWKEGRTLEAEEMLQKMNEKCYQPDTVTCNIVVNGLCRNGELDKASEIVSEMWT 496

Query: 538 CGIP----------------------PNAATYNIMID-CCSIIRCFKSASALVSMMVRDG 574
            G                        P+  TY  +I+  C + R  ++    + M+ ++ 
Sbjct: 497 NGPTSLDKGNSFASLINSIHNVSNCLPDGITYTTLINGLCKVGRLEEAKKKFIEMLAKN- 555

Query: 575 FYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIE 634
             P ++TY   I      G    A  +L  +   G    +  YN ++       +I  I 
Sbjct: 556 LRPDSVTYDTFIWSFCKQGKISSAFRVLKDMERNGCSKTLQTYNALILGLGSNNQIFEIY 615

Query: 635 FIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLE------ 688
            + ++M +  + PD  T + + +     G    A+  L  +  + +   VS+ +      
Sbjct: 616 GLKDEMKEKGISPDICTYNNIITCLCEGGKAKDAISLLHEMLDKGISPNVSSFKILIKAF 675

Query: 689 EKRSDFE 695
            K SDF+
Sbjct: 676 SKSSDFK 682


>gi|356528730|ref|XP_003532952.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g73710-like [Glycine max]
          Length = 963

 Score = 98.2 bits (243), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 88/394 (22%), Positives = 176/394 (44%), Gaps = 30/394 (7%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           W+F+ +I  CG   +   AE L+  M+  G+ P + T++ F+      R +   +   K 
Sbjct: 307 WTFNTMIFVCGSQGDLAEAEALLGMMEEKGVAPDTKTFNIFLSLYAEARDIGAAVLCYKR 366

Query: 354 MQQNNLKPQDSTI-ATLSVECSKALELDLAEALLDQISR--------CTNPKPFSAFLAA 404
           +++  L P + T  A L V C K +  ++ E L+D++ R        C  P     ++  
Sbjct: 367 IREAGLCPDEVTYRALLGVLCRKNMVREV-EDLIDEMERAFVSVDEHCV-PGIVEMYVGE 424

Query: 405 CDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAI 464
            D +DK    +K F ++  ++  +IR+   +  +F       E  ++F +    + +   
Sbjct: 425 GD-VDKAFDLLKKF-QVNGEMSSNIRS--AIMDVFAEKGLWEEAEDVFYR---GRNLAGR 477

Query: 465 EMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVE 521
           + D+   N+         ++KA G   +  + I  F   K     P   TYN+++  L  
Sbjct: 478 KRDVLECNV---------MIKAYGKAKLYDKAISLFKGMKNHGTWPNESTYNSLVQMLSG 528

Query: 522 AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMT 581
           A    +AM++  +M+  G  P   T++ +I C + +     A ++   MVR G  P  + 
Sbjct: 529 ADLVDQAMDLVDEMQEVGFKPPCQTFSAVIGCYARLGQLSDAVSVFKEMVRTGVKPNEVV 588

Query: 582 YTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMH 641
           Y +LI    ++G  +EAL    ++   G+  ++++  ++LK  C+ G ++  + I E+M 
Sbjct: 589 YGSLINGFAEHGSLEEALKYFHMMEESGLSSNLVVLTSLLKSYCKVGNLEGAKAIYERMK 648

Query: 642 QNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
             +   D   C+ +   + + G  + A  A + L
Sbjct: 649 NMEGGLDLVACNSMIGLFADLGLVSEAKLAFENL 682



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 72/170 (42%)

Query: 504 KTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSA 563
           + P  + TYN ++    +A     A E+F +M   G+  +  T+N MI  C        A
Sbjct: 266 QKPRLSNTYNVLIDLYGKAGRLSEAAEVFAEMLKAGVAVDVWTFNTMIFVCGSQGDLAEA 325

Query: 564 SALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKK 623
            AL+ MM   G  P T T+   + +  +  D   A+     +   G+  D + Y  +L  
Sbjct: 326 EALLGMMEEKGVAPDTKTFNIFLSLYAEARDIGAAVLCYKRIREAGLCPDEVTYRALLGV 385

Query: 624 ACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
            C K  +  +E +I++M +  V  D      +   YV  G  + A + L+
Sbjct: 386 LCRKNMVREVEDLIDEMERAFVSVDEHCVPGIVEMYVGEGDVDKAFDLLK 435



 Score = 56.2 bits (134), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 113/505 (22%), Positives = 204/505 (40%), Gaps = 59/505 (11%)

Query: 136 GYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVT 195
           G L EA  L+  + E+ G+ P    +N FL   A+   +  A LC   +    +  +EVT
Sbjct: 320 GDLAEAEALLGMMEEK-GVAPDTKTFNIFLSLYAEARDIGAAVLCYKRIREAGLCPDEVT 378

Query: 196 YTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRK-----FVWSFTRLRDLKSAYETL 250
           Y  LL + + +KN+  V E+ ED I     +  S+ +      V  +    D+  A++ L
Sbjct: 379 YRALLGV-LCRKNM--VREV-EDLIDEMERAFVSVDEHCVPGIVEMYVGEGDVDKAFDLL 434

Query: 251 QHMVALAMMGKLYINRTSEGRLRSSRLDI----PIPLNALPVM---KVLRWSFSDV---- 299
           +         K  +N      +RS+ +D+     +   A  V    + L     DV    
Sbjct: 435 K---------KFQVNGEMSSNIRSAIMDVFAEKGLWEEAEDVFYRGRNLAGRKRDVLECN 485

Query: 300 --IHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQN 357
             I A G+ +    A  L   M++ G  P+  TY+  ++ +     +   M+++  MQ+ 
Sbjct: 486 VMIKAYGKAKLYDKAISLFKGMKNHGTWPNESTYNSLVQMLSGADLVDQAMDLVDEMQEV 545

Query: 358 NLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDKPER 413
             KP   T + +    ++  +L  A ++  ++ R T  KP    + + +         E 
Sbjct: 546 GFKPPCQTFSAVIGCYARLGQLSDAVSVFKEMVR-TGVKPNEVVYGSLINGFAEHGSLEE 604

Query: 414 AIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIE--MDMAR 470
           A+K F  M +  L  ++     L   +  V      GN+       +R+  +E  +D+  
Sbjct: 605 ALKYFHMMEESGLSSNLVVLTSLLKSYCKV------GNLEGAKAIYERMKNMEGGLDLVA 658

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHR 527
            N      SM  L   LG   ++ E    F ++   +G     +Y T+++          
Sbjct: 659 CN------SMIGLFADLG---LVSEAKLAF-ENLREMGRADAISYATIMYLYKGVGLIDE 708

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A+EI ++MK  G+  +  +YN ++ C +    F     L+  M+     P   T+  L  
Sbjct: 709 AIEIAEEMKLSGLLRDCVSYNKVLVCYAANGQFYECGELIHEMISQKLLPNDGTFKVLFT 768

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPH 612
           IL   G   EA+  L+    EG P+
Sbjct: 769 ILKKGGIPTEAVAQLESSYQEGKPY 793



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 44/87 (50%)

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           YN VL +L +AQ+  +    +  M   G+ P   TY++++D        + A   +  M 
Sbjct: 108 YNVVLRALGKAQQWDQLRLCWLDMAKNGVLPTNNTYSMLVDVYGKAGLVQEALLWIRHMR 167

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEA 598
             GF+P  +T   ++K+L D GDFD A
Sbjct: 168 VRGFFPDEVTMCTVVKVLKDVGDFDRA 194



 Score = 43.1 bits (100), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 41/188 (21%), Positives = 83/188 (44%), Gaps = 16/188 (8%)

Query: 421 MRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISM 480
           + QKL P+  T+++LF++      P E     +Q++S+ +              +S + M
Sbjct: 752 ISQKLLPNDGTFKVLFTILKKGGIPTE---AVAQLESSYQEGKPYARQTTFTALYSLVGM 808

Query: 481 KNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGI 540
            NL  AL       E  Q F +S+  L +  +N  +++   A + ++A+ I+ +M+   +
Sbjct: 809 HNL--AL-------ESAQTFIESEVDLDSSAFNVAIYAYGSAGDINKALNIYMKMRDEHL 859

Query: 541 PPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALN 600
            P+  TY  ++ C       +    + S +     Y +  +  +L K ++D        +
Sbjct: 860 GPDLVTYIYLVGCYGKAGMVEGVKQIYSQLE----YGEIESNESLFKAIIDAYKICNRKD 915

Query: 601 LLDLVSLE 608
           L +LVS E
Sbjct: 916 LAELVSQE 923


>gi|8493575|gb|AAF75798.1|AC011000_1 Contains multiple PPR Repeats PF|01535 [Arabidopsis thaliana]
          Length = 514

 Score = 98.2 bits (243), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 92/400 (23%), Positives = 168/400 (42%), Gaps = 11/400 (2%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           +S ++    +  N   A+ +  +M   G+ P+  TY+  I    S     +  ++L+ M 
Sbjct: 83  YSAIVDRLCKDGNHIKAQNIFTEMHEKGIFPNVLTYNCMIDGYCSYGKWSDAEQLLRDMI 142

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDKP 411
           + N+ P   T + L     K  ++  AE L  ++ R  N  P    +S+ +       + 
Sbjct: 143 ERNIDPDVVTFSALINAFVKEGKVSGAEELYREMLR-RNIFPTTITYSSMIDGFCKHSRL 201

Query: 412 ERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           E A  +F  M  K   PDI T   L    G   A     + F QV +      +  +M  
Sbjct: 202 EDAKHMFDLMVSKGCSPDIITLNTLID--GCCRAKRHLIHGFCQVGNVNVAQDLFQEMIS 259

Query: 471 NNIQHSHISMKNLLKALGAEGMIR---ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHR 527
           N +    ++   LL  L   G +    E+ + F  SK  L T T N +++ + +  +   
Sbjct: 260 NGVSPDIVTCNTLLAGLCENGKLEKALEMFKVFQKSKMDLDTATCNIIINGMCKGNKVDE 319

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A ++F  +   G+  +  TYNI+I        F  A  +   M+  G  P T+TY +++ 
Sbjct: 320 AWDLFNSLPVNGVETDVVTYNILIGVFVKEGNFLRAEDIYLEMLCKGIIPSTVTYNSMVD 379

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
                   +EA  ++D +  EG   DV+ ++T++K  C+ GR+D    +  +M Q  +  
Sbjct: 380 GFCKQNRLEEARQMVDSMVSEGCSPDVVTFSTLIKGYCKAGRVDDGLELFSEMCQRGLVA 439

Query: 648 DPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTL 687
           D  T + +  G+   G  N A +  + +    +C +  T 
Sbjct: 440 DTITYNALIHGFCKVGDLNGAQDIFEEMVSSGVCPDTITF 479



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 109/557 (19%), Positives = 210/557 (37%), Gaps = 74/557 (13%)

Query: 54  ATQMQIVDALCR-GERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRM 112
            T   +++ LCR G   +A  L+  +    H   A  +  I+N   +  D +  +   R 
Sbjct: 11  VTFTTLMNGLCREGRVLQALALVDRMVEEGHQPDAVTYGTIVNGMCKLGDTVSALNMLRK 70

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
           M+E +I  N   Y  ++  LCK G   +A N+   + E+ GI+P +  YN  +       
Sbjct: 71  MDESQIKANVVIYSAIVDRLCKDGNHIKAQNIFTEMHEK-GIFPNVLTYNCMIDGYCSYG 129

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSL-SIFSLR 231
               A   L  M  R +  + VT++ L+   V +  +S   E++ + ++     +  +  
Sbjct: 130 KWSDAEQLLRDMIERNIDPDVVTFSALINAFVKEGKVSGAEELYREMLRRNIFPTTITYS 189

Query: 232 KFVWSFTRLRDLKSAYETLQHMVALAMMGKLY-INRTSEGRLRSSRLDIPIPLNALPVMK 290
             +  F +   L+ A      MV+      +  +N   +G  R+ R              
Sbjct: 190 SMIDGFCKHSRLEDAKHMFDLMVSKGCSPDIITLNTLIDGCCRAKR-------------- 235

Query: 291 VLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEV 350
                   +IH   +  N  +A+ L  +M S G+ P   T +  +  +  +  L   +E+
Sbjct: 236 -------HLIHGFCQVGNVNVAQDLFQEMISNGVSPDIVTCNTLLAGLCENGKLEKALEM 288

Query: 351 LKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDK 410
            K+ Q++ +    +T   +     K  ++D A  L        N  P +           
Sbjct: 289 FKVFQKSKMDLDTATCNIIINGMCKGNKVDEAWDLF-------NSLPVNG---------- 331

Query: 411 PERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
                         +  D+ TY +L  +F       +EGN         R   I ++M  
Sbjct: 332 --------------VETDVVTYNILIGVF------VKEGNFL-------RAEDIYLEMLC 364

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP----TYNTVLHSLVEAQESH 526
             I  S ++  +++     +  + E  Q   DS    G      T++T++    +A    
Sbjct: 365 KGIIPSTVTYNSMVDGFCKQNRLEEARQMV-DSMVSEGCSPDVVTFSTLIKGYCKAGRVD 423

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
             +E+F +M   G+  +  TYN +I     +     A  +   MV  G  P T+T+ +++
Sbjct: 424 DGLELFSEMCQRGLVADTITYNALIHGFCKVGDLNGAQDIFEEMVSSGVCPDTITFRSML 483

Query: 587 KILLDYGDFDEALNLLD 603
             L    +  + L +L+
Sbjct: 484 AGLCTKAELQKGLTMLE 500



 Score = 70.9 bits (172), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 108/524 (20%), Positives = 203/524 (38%), Gaps = 62/524 (11%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           +  +M  LC+ G + +A  L+  + E  G  P    Y + +    KL   V A   L  M
Sbjct: 13  FTTLMNGLCREGRVLQALALVDRMVEE-GHQPDAVTYGTIVNGMCKLGDTVSALNMLRKM 71

Query: 185 DSRMVGKNEVTYTELL-KLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDL 243
           D   +  N V Y+ ++ +L     ++ A +   E + K    ++ +    +  +      
Sbjct: 72  DESQIKANVVIYSAIVDRLCKDGNHIKAQNIFTEMHEKGIFPNVLTYNCMIDGYCSYGKW 131

Query: 244 KSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHAC 303
             A + L+ M+                  R+   D+               +FS +I+A 
Sbjct: 132 SDAEQLLRDMIE-----------------RNIDPDV--------------VTFSALINAF 160

Query: 304 GRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQD 363
            +      AE+L  +M    + P++ TY   I        L +   +  +M      P  
Sbjct: 161 VKEGKVSGAEELYREMLRRNIFPTTITYSSMIDGFCKHSRLEDAKHMFDLMVSKGCSPDI 220

Query: 364 STIATLSVECSKAL-----------ELDLAEALLDQ-ISRCTNPKPFS--AFLAACDTMD 409
            T+ TL   C +A             +++A+ L  + IS   +P   +    LA      
Sbjct: 221 ITLNTLIDGCCRAKRHLIHGFCQVGNVNVAQDLFQEMISNGVSPDIVTCNTLLAGLCENG 280

Query: 410 KPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
           K E+A+++F   ++ K+  D  T  ++ +     N   E  ++F+ +     +N +E D+
Sbjct: 281 KLEKALEMFKVFQKSKMDLDTATCNIIINGMCKGNKVDEAWDLFNSL----PVNGVETDV 336

Query: 469 ARNNIQHS-HISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHR 527
              NI     +   N L+A   E +  E++   C    P  T TYN+++    +      
Sbjct: 337 VTYNILIGVFVKEGNFLRA---EDIYLEML---CKGIIP-STVTYNSMVDGFCKQNRLEE 389

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDC-CSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
           A ++   M + G  P+  T++ +I   C   R       L S M + G    T+TY ALI
Sbjct: 390 ARQMVDSMVSEGCSPDVVTFSTLIKGYCKAGR-VDDGLELFSEMCQRGLVADTITYNALI 448

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
                 GD + A ++ + +   G+  D + + ++L   C K  +
Sbjct: 449 HGFCKVGDLNGAQDIFEEMVSSGVCPDTITFRSMLAGLCTKAEL 492



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 57/243 (23%), Positives = 99/243 (40%), Gaps = 50/243 (20%)

Query: 479 SMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTC 538
            M  L   + A  M+R++ +    S+       Y+ ++  L +     +A  IF +M   
Sbjct: 54  GMCKLGDTVSALNMLRKMDE----SQIKANVVIYSAIVDRLCKDGNHIKAQNIFTEMHEK 109

Query: 539 GIPPNAATYNIMIDC-CS----------------------------IIRCF------KSA 563
           GI PN  TYN MID  CS                            +I  F        A
Sbjct: 110 GIFPNVLTYNCMIDGYCSYGKWSDAEQLLRDMIERNIDPDVVTFSALINAFVKEGKVSGA 169

Query: 564 SALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKK 623
             L   M+R   +P T+TY+++I     +   ++A ++ DL+  +G   D++  NT++  
Sbjct: 170 EELYREMLRRNIFPTTITYSSMIDGFCKHSRLEDAKHMFDLMVSKGCSPDIITLNTLIDG 229

Query: 624 A-----------CEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEAL 672
                       C+ G ++V + + ++M  N V PD  TC+ + +G    G    A+E  
Sbjct: 230 CCRAKRHLIHGFCQVGNVNVAQDLFQEMISNGVSPDIVTCNTLLAGLCENGKLEKALEMF 289

Query: 673 QVL 675
           +V 
Sbjct: 290 KVF 292



 Score = 58.9 bits (141), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 74/150 (49%), Gaps = 2/150 (1%)

Query: 539 GIPPNAATYNIMID-CCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDE 597
           G P N  T+  +++  C   R  + A ALV  MV +G  P  +TY  ++  +   GD   
Sbjct: 5   GCPANVVTFTTLMNGLCREGRVLQ-ALALVDRMVEEGHQPDAVTYGTIVNGMCKLGDTVS 63

Query: 598 ALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFS 657
           ALN+L  +    I  +V++Y+ I+ + C+ G     + I  +MH+  + P+  T + +  
Sbjct: 64  ALNMLRKMDESQIKANVVIYSAIVDRLCKDGNHIKAQNIFTEMHEKGIFPNVLTYNCMID 123

Query: 658 GYVNCGFHNSAMEALQVLSMRMLCEEVSTL 687
           GY + G  + A + L+ +  R +  +V T 
Sbjct: 124 GYCSYGKWSDAEQLLRDMIERNIDPDVVTF 153



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 37/169 (21%), Positives = 75/169 (44%)

Query: 502 DSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFK 561
           ++  P    T+ T+++ L       +A+ +  +M   G  P+A TY  +++    +    
Sbjct: 3   ETGCPANVVTFTTLMNGLCREGRVLQALALVDRMVEEGHQPDAVTYGTIVNGMCKLGDTV 62

Query: 562 SASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTIL 621
           SA  ++  M         + Y+A++  L   G+  +A N+   +  +GI  +VL YN ++
Sbjct: 63  SALNMLRKMDESQIKANVVIYSAIVDRLCKDGNHIKAQNIFTEMHEKGIFPNVLTYNCMI 122

Query: 622 KKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAME 670
              C  G+    E ++  M +  + PD  T   + + +V  G  + A E
Sbjct: 123 DGYCSYGKWSDAEQLLRDMIERNIDPDVVTFSALINAFVKEGKVSGAEE 171


>gi|255570715|ref|XP_002526312.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534393|gb|EEF36101.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 729

 Score = 98.2 bits (243), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 115/538 (21%), Positives = 212/538 (39%), Gaps = 53/538 (9%)

Query: 107 METWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLG 166
           +E +RMM E  I      Y  M+ + CKGG ++ A +L+  + ER G YP    +N  + 
Sbjct: 222 LEVYRMMGEYGIRPTVTTYNTMLHSFCKGGEVQRALDLVPKMQER-GCYPSEVTFNVLIN 280

Query: 167 ACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYSL 225
             +K   +  A   +  M    +  +  TY  L+     +  L     +WE+ + +  S 
Sbjct: 281 GLSKKGELQQAKGLIQEMAKAGLRVSPYTYNPLICGYCKKGLLVEALALWEEMVTRGVSP 340

Query: 226 SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNA 285
           ++ S    ++ F +   +  A + L  M+   +M  +                       
Sbjct: 341 TVASHNTIMYGFCKEGKMSDARQQLSDMLKKNLMPDII---------------------- 378

Query: 286 LPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLR 345
                    S++ +I+   R  N G A  L+ +++   L  +  TY+  I  +     L 
Sbjct: 379 ---------SYNTLIYGFCRLGNIGEAFILLDELRFRNLSFNIVTYNTLIDGLCRLGDLE 429

Query: 346 NGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ---ISRCTNPKPFSAFL 402
             +++ + M    + P   T   L     K   + +A+   D+   +    +   ++A +
Sbjct: 430 TALKLKEDMINRGIHPDVVTYTVLVNGACKLGNMLMAKEFFDEMLHVGLAPDQFAYTARI 489

Query: 403 AACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI 461
                +    +A K+  +M  K   PD+ TY +       VN   + GN+       +  
Sbjct: 490 VGELKLGDTAKAFKLQEEMLTKGFPPDVITYNVF------VNGLCKLGNL-------EEA 536

Query: 462 NAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPT---YNTVLHS 518
             +   M R+     H++  + + A    G +RE  + F D  +   TPT   Y  ++H+
Sbjct: 537 GELLQKMIRDGHVPDHVTYTSFMHAHMENGHLREGREIFYDMLSRGQTPTVVTYTVLIHA 596

Query: 519 LVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQ 578
                    AM  F +M+  G+ PN  TYN++I+    +R    A      M   G +P 
Sbjct: 597 HALNGRLDWAMAYFLEMQEKGVVPNVITYNVLINGFCKVRKMDQACKFFIEMQEKGIFPN 656

Query: 579 TMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFI 636
             TYT LI    + G + EAL L   +  + I  D   +  +LKK  +  ++  ++FI
Sbjct: 657 KYTYTILINENCNMGKWQEALRLYAQMLGKRIRPDSCTHGALLKKLDKDYKVQAVQFI 714



 Score = 82.4 bits (202), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 89/439 (20%), Positives = 182/439 (41%), Gaps = 41/439 (9%)

Query: 243 LKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHA 302
           +KSAY  ++ +++  M G   ++    G L    L        L   K++R  F   +  
Sbjct: 155 MKSAYWVMERIISFEMYG--IVDVLIGGYLNYQCL--------LVFEKMMRNRFLPDVKN 204

Query: 303 CGRTQNSGLAEQLMLQ-------MQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           C R       + L+++       M   G++P+  TY+  + +      ++  ++++  MQ
Sbjct: 205 CNRILKILRDKNLLVKALEVYRMMGEYGIRPTVTTYNTMLHSFCKGGEVQRALDLVPKMQ 264

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQISRC---TNPKPFSAFLAACDTMDKPE 412
           +    P + T   L    SK  EL  A+ L+ ++++     +P  ++  +          
Sbjct: 265 ERGCYPSEVTFNVLINGLSKKGELQQAKGLIQEMAKAGLRVSPYTYNPLICGYCKKGLLV 324

Query: 413 RAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471
            A+ ++ +M  + + P + ++  +   F       +EG M    D+ ++++    DM + 
Sbjct: 325 EALALWEEMVTRGVSPTVASHNTIMYGFC------KEGKM---SDARQQLS----DMLKK 371

Query: 472 NIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRA 528
           N+    IS   L+      G I E   L+             TYNT++  L    +   A
Sbjct: 372 NLMPDIISYNTLIYGFCRLGNIGEAFILLDELRFRNLSFNIVTYNTLIDGLCRLGDLETA 431

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
           +++ + M   GI P+  TY ++++    +     A      M+  G  P    YTA I  
Sbjct: 432 LKLKEDMINRGIHPDVVTYTVLVNGACKLGNMLMAKEFFDEMLHVGLAPDQFAYTARIVG 491

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
            L  GD  +A  L + +  +G P DV+ YN  +   C+ G ++    ++++M ++   PD
Sbjct: 492 ELKLGDTAKAFKLQEEMLTKGFPPDVITYNVFVNGLCKLGNLEEAGELLQKMIRDGHVPD 551

Query: 649 PSTCHFVFSGYVNCGFHNS 667
               H  ++ +++    N 
Sbjct: 552 ----HVTYTSFMHAHMENG 566



 Score = 70.9 bits (172), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 78/395 (19%), Positives = 156/395 (39%), Gaps = 31/395 (7%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ ++H+  +      A  L+ +MQ  G  PS  T++  I  +     L+    +++ M
Sbjct: 239 TYNTMLHSFCKGGEVQRALDLVPKMQERGCYPSEVTFNVLINGLSKKGELQQAKGLIQEM 298

Query: 355 QQNNLKPQDSTIATLSVE-CSKALELDLAEALLDQISRCTNPKPFS---AFLAACDTMDK 410
            +  L+    T   L    C K L ++      + ++R  +P   S        C     
Sbjct: 299 AKAGLRVSPYTYNPLICGYCKKGLLVEALALWEEMVTRGVSPTVASHNTIMYGFCKEGKM 358

Query: 411 PERAIKIFAKMRQKLRPDIRTYELL---FSLFGNV-------------NAPYEEGNMFSQ 454
            +   ++   +++ L PDI +Y  L   F   GN+             N  +      + 
Sbjct: 359 SDARQQLSDMLKKNLMPDIISYNTLIYGFCRLGNIGEAFILLDELRFRNLSFNIVTYNTL 418

Query: 455 VDSAKRINAIEM------DMARNNIQHSHISMKNLLKA---LGAEGMIRELIQYFCDSKT 505
           +D   R+  +E       DM    I    ++   L+     LG   M +E          
Sbjct: 419 IDGLCRLGDLETALKLKEDMINRGIHPDVVTYTVLVNGACKLGNMLMAKEFFDEMLHVGL 478

Query: 506 PLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASA 565
                 Y   +   ++  ++ +A ++ ++M T G PP+  TYN+ ++    +   + A  
Sbjct: 479 APDQFAYTARIVGELKLGDTAKAFKLQEEMLTKGFPPDVITYNVFVNGLCKLGNLEEAGE 538

Query: 566 LVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL-DLVSLEGIPHDVLLYNTILKKA 624
           L+  M+RDG  P  +TYT+ +   ++ G   E   +  D++S    P  V+ Y  ++   
Sbjct: 539 LLQKMIRDGHVPDHVTYTSFMHAHMENGHLREGREIFYDMLSRGQTP-TVVTYTVLIHAH 597

Query: 625 CEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
              GR+D       +M +  V P+  T + + +G+
Sbjct: 598 ALNGRLDWAMAYFLEMQEKGVVPNVITYNVLINGF 632



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 80/176 (45%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TYNT+LHS  +  E  RA+++  +M+  G  P+  T+N++I+  S     + A  L+  M
Sbjct: 239 TYNTMLHSFCKGGEVQRALDLVPKMQERGCYPSEVTFNVLINGLSKKGELQQAKGLIQEM 298

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
            + G      TY  LI      G   EAL L + +   G+   V  +NTI+   C++G++
Sbjct: 299 AKAGLRVSPYTYNPLICGYCKKGLLVEALALWEEMVTRGVSPTVASHNTIMYGFCKEGKM 358

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
                 +  M +  + PD  + + +  G+   G    A   L  L  R L   + T
Sbjct: 359 SDARQQLSDMLKKNLMPDIISYNTLIYGFCRLGNIGEAFILLDELRFRNLSFNIVT 414



 Score = 39.3 bits (90), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 32/178 (17%), Positives = 75/178 (42%), Gaps = 12/178 (6%)

Query: 515 VLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVS------ 568
           ++  L+    +++ + +F++M      P+        +C  I++  +  + LV       
Sbjct: 173 IVDVLIGGYLNYQCLLVFEKMMRNRFLPDVK------NCNRILKILRDKNLLVKALEVYR 226

Query: 569 MMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
           MM   G  P   TY  ++      G+   AL+L+  +   G     + +N ++    +KG
Sbjct: 227 MMGEYGIRPTVTTYNTMLHSFCKGGEVQRALDLVPKMQERGCYPSEVTFNVLINGLSKKG 286

Query: 629 RIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
            +   + +I++M +  ++  P T + +  GY   G    A+   + +  R +   V++
Sbjct: 287 ELQQAKGLIQEMAKAGLRVSPYTYNPLICGYCKKGLLVEALALWEEMVTRGVSPTVAS 344


>gi|302762673|ref|XP_002964758.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
 gi|300166991|gb|EFJ33596.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
          Length = 552

 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 92/386 (23%), Positives = 166/386 (43%), Gaps = 25/386 (6%)

Query: 298 DVIHACGRTQNS-GLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQ 356
           D +  CGR +N+  L + + +     G +P+  TY   I  +  D  +  G ++L+ M  
Sbjct: 73  DGLCKCGRIENALTLYDDMAIH---FGFRPTVVTYSTLIDGLCRDHEVDKGCKLLEEMAG 129

Query: 357 NNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKP---ER 413
               P   T  TL            A +LL+Q++    P     F      + K    E 
Sbjct: 130 RGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPELITFGLIIKGLCKEGEIEA 189

Query: 414 AIKIFAKM---RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           A ++  +M      L PD+ T+  +           +  N+F +        A+E     
Sbjct: 190 AFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKR--------ALERGCRP 241

Query: 471 NNIQHSHI--SMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRA 528
           N + +S +   +  + K   A  ++ ++++  C + T     TY+TV+  L++      A
Sbjct: 242 NVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTV----TYSTVVDGLLKVGRMEDA 297

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
           + + +QM+  G  P+A TYN +ID     +  + A  L+  M+  GF+P  +TYT L   
Sbjct: 298 VVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHG 357

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK-VQP 647
           L   G FDEA+ +LD ++  G   + + Y++I+   C+ GR+       E+M +++ V P
Sbjct: 358 LCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAP 417

Query: 648 DPSTCHFVFSGYVNCGFHNSAMEALQ 673
                  +  G    G  + A E L+
Sbjct: 418 HVIAYSALIDGLCKAGKIDEAYEFLE 443



 Score = 79.0 bits (193), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 107/544 (19%), Positives = 205/544 (37%), Gaps = 38/544 (6%)

Query: 128 MMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSR 187
           M+  LCK   +++A  L   + ++  IYP +  Y + +    K   +  A    +   ++
Sbjct: 1   MIDGLCKSRKVDKAITLFKQMVDK-AIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAK 59

Query: 188 MVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSL--SIFSLRKFVWSFTRLRDLKS 245
                 VTY  ++        +     +++D   H+    ++ +    +    R  ++  
Sbjct: 60  GCHPTVVTYNTMIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDK 119

Query: 246 AYETLQHMVALAMMGKLYINRT------SEGRLRSS-RLDIPIPLNALPVMKVLRWSFSD 298
             + L+ M             T       +GR + +  L   +  N  P   +   +F  
Sbjct: 120 GCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPELI---TFGL 176

Query: 299 VIHA-C--GRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           +I   C  G  + +      M  ++S GL P   T++  +  +  ++ + +   V K   
Sbjct: 177 IIKGLCKEGEIEAAFRVVDEMFMIES-GLSPDVITFNSVLDGLCKEQRILDAHNVFKRAL 235

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQISR--C-TNPKPFSAFLAACDTMDKPE 412
           +   +P   T +TL    SK  ++D A  LL ++    C  N   +S  +     + + E
Sbjct: 236 ERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRME 295

Query: 413 RAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471
            A+ +  +MR     PD  TY  L   F       E   +  +             M   
Sbjct: 296 DAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLRE-------------MLEA 342

Query: 472 NIQHSHISMKNLLKALGAEGMIRELIQ---YFCDSKTPLGTPTYNTVLHSLVEAQESHRA 528
               S ++   L   L   G   E ++   Y           TY++++  L +A     A
Sbjct: 343 GFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEA 402

Query: 529 MEIFKQM-KTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           +  F++M +   + P+   Y+ +ID          A   +  M+R G  P  +T++ LI 
Sbjct: 403 LGYFEKMARDEVVAPHVIAYSALIDGLCKAGKIDEAYEFLERMIRAGRIPDVVTFSILIN 462

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
            L D G  D  L L   ++  G   D++ Y T++ + C   R+D    + +QM  + + P
Sbjct: 463 GLCDAGRIDTGLELFRGMAERGCVPDMVTYATLVDRLCRASRVDEAFDLFQQMRSDGLSP 522

Query: 648 DPST 651
           D ST
Sbjct: 523 DRST 526



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 85/377 (22%), Positives = 152/377 (40%), Gaps = 23/377 (6%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A  L  QM    + P   TY   I  +   R ++   ++ +  +     P   T  T+  
Sbjct: 14  AITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYNTMID 73

Query: 372 ECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDKPERAIKIFAKMRQK-LR 426
              K   ++ A  L D ++     +P    +S  +       + ++  K+  +M  +   
Sbjct: 74  GLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDKGCKLLEEMAGRGCA 133

Query: 427 PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKA 486
           P+  TY  L      VNA      +  Q  S +  + +E  MA N      I+   ++K 
Sbjct: 134 PNAVTYNTL------VNA------LLGQGRSKEAFSLLEQ-MAANGCPPELITFGLIIKG 180

Query: 487 LGAEGMIRELIQ-----YFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIP 541
           L  EG I    +     +  +S       T+N+VL  L + Q    A  +FK+    G  
Sbjct: 181 LCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCR 240

Query: 542 PNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNL 601
           PN  TY+ +ID  S +     A  L++ MV  G    T+TY+ ++  LL  G  ++A+ +
Sbjct: 241 PNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVV 300

Query: 602 LDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVN 661
           L  +   G   D + YNT++    ++ R+     ++ +M +    P   T   +  G   
Sbjct: 301 LRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCR 360

Query: 662 CGFHNSAMEALQVLSMR 678
            G  + A+E L  ++ R
Sbjct: 361 SGRFDEAVEILDYMAAR 377



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 103/502 (20%), Positives = 183/502 (36%), Gaps = 44/502 (8%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y  M+  LCK G +E A  L   +   +G  P +  Y++ +    + H +      L+ M
Sbjct: 68  YNTMIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDKGCKLLEEM 127

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHY---SLSIFSLRKFVWSFTRLR 241
             R    N VTY  L+   + Q        + E    +     L  F L   +    +  
Sbjct: 128 AGRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPELITFGL--IIKGLCKEG 185

Query: 242 DLKSAYETLQHMVALAMM---GKLYINRTSEGRLRSSRLDIPIPLNALPVMKVL------ 292
           ++++A+  +  M  +        +  N   +G  +  R+     L+A  V K        
Sbjct: 186 EIEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRI-----LDAHNVFKRALERGCR 240

Query: 293 --RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEV 350
               ++S +I    +      A QL+ +M  LG + ++ TY   +  ++    + + + V
Sbjct: 241 PNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVV 300

Query: 351 LKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDK 410
           L+ M+     P   T  TL     K   L  A  LL ++           +   C  + +
Sbjct: 301 LRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCR 360

Query: 411 PER---AIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM 466
             R   A++I   M  +   P+  TY  +           E    F +            
Sbjct: 361 SGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEK------------ 408

Query: 467 DMARNNIQHSH-ISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEA 522
            MAR+ +   H I+   L+  L   G I E  ++          P   T++ +++ L +A
Sbjct: 409 -MARDEVVAPHVIAYSALIDGLCKAGKIDEAYEFLERMIRAGRIPDVVTFSILINGLCDA 467

Query: 523 QESHRAMEIFKQMKTCGIPPNAATYNIMID-CCSIIRCFKSASALVSMMVRDGFYPQTMT 581
                 +E+F+ M   G  P+  TY  ++D  C   R    A  L   M  DG  P   T
Sbjct: 468 GRIDTGLELFRGMAERGCVPDMVTYATLVDRLCRASR-VDEAFDLFQQMRSDGLSPDRST 526

Query: 582 YTALIKILLDYGDFDEALNLLD 603
              +I  LL+    ++A  + D
Sbjct: 527 RRTMIHGLLEVNRDEDAKRIQD 548



 Score = 57.0 bits (136), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 74/163 (45%), Gaps = 1/163 (0%)

Query: 515 VLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDG 574
           ++  L ++++  +A+ +FKQM    I P+  TY  +ID     R  K A  L       G
Sbjct: 1   MIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKG 60

Query: 575 FYPQTMTYTALIKILLDYGDFDEALNLLDLVSLE-GIPHDVLLYNTILKKACEKGRIDVI 633
            +P  +TY  +I  L   G  + AL L D +++  G    V+ Y+T++   C    +D  
Sbjct: 61  CHPTVVTYNTMIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDKG 120

Query: 634 EFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
             ++E+M      P+  T + + +  +  G    A   L+ ++
Sbjct: 121 CKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMA 163


>gi|15224753|ref|NP_179518.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|334184304|ref|NP_001189552.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546774|sp|Q6NKW7.2|PP164_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g19280
 gi|3135258|gb|AAC16458.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|330251769|gb|AEC06863.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|330251770|gb|AEC06864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 693

 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 107/443 (24%), Positives = 173/443 (39%), Gaps = 71/443 (16%)

Query: 305 RTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDS 364
           R     LA + +  M S G   ++     FIR   SD     G E+L  M+   ++P   
Sbjct: 248 RVHGLELAREFVEHMLSRGRHLNAAVLSLFIRKYCSDGYFDKGWELLMGMKHYGIRPDIV 307

Query: 365 TIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACD---TMDKPERAIKIFAKM 421
                  +  KA  L  A ++L ++      +   +  +  D    + KPE AIK+    
Sbjct: 308 AFTVFIDKLCKAGFLKEATSVLFKLKLFGISQDSVSVSSVIDGFCKVGKPEEAIKLIHSF 367

Query: 422 RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQV-------DSAKRINAIE--MDMARNN 472
           R  LRP+I  Y    S   +         +F ++       D       I+   ++ R +
Sbjct: 368 R--LRPNIFVYSSFLSNICSTGDMLRASTIFQEIFELGLLPDCVCYTTMIDGYCNLGRTD 425

Query: 473 --IQHSHISMKN-----------LLKALGAEGMIRELIQYFCDSKT---PLGTPTYNTVL 516
              Q+    +K+           L+ A    G I +    F + KT    L   TYN ++
Sbjct: 426 KAFQYFGALLKSGNPPSLTTSTILIGACSRFGSISDAESVFRNMKTEGLKLDVVTYNNLM 485

Query: 517 HSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFY 576
           H   +  + ++  E+  +M++ GI P+ ATYNI+I    +      A+ ++S ++R GF 
Sbjct: 486 HGYGKTHQLNKVFELIDEMRSAGISPDVATYNILIHSMVVRGYIDEANEIISELIRRGFV 545

Query: 577 PQTMTYTALIKILLDYGDFDEALNLL----------DLVSLEGIPH-------------- 612
           P T+ +T +I      GDF EA  L           D+V+   + H              
Sbjct: 546 PSTLAFTDVIGGFSKRGDFQEAFILWFYMADLRMKPDVVTCSALLHGYCKAQRMEKAIVL 605

Query: 613 -----------DVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVN 661
                      DV+LYNT++   C  G I+    +I  M Q  + P+ ST H +  G   
Sbjct: 606 FNKLLDAGLKPDVVLYNTLIHGYCSVGDIEKACELIGLMVQRGMLPNESTHHALVLGLEG 665

Query: 662 CGFHNSAMEALQVLSMRMLCEEV 684
             F NS   A       ML EE+
Sbjct: 666 KRFVNSETHA------SMLLEEI 682


>gi|46518477|gb|AAS99720.1| At2g19280 [Arabidopsis thaliana]
 gi|62319953|dbj|BAD94048.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|110738808|dbj|BAF01327.1| putative salt-inducible protein [Arabidopsis thaliana]
          Length = 693

 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 107/443 (24%), Positives = 173/443 (39%), Gaps = 71/443 (16%)

Query: 305 RTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDS 364
           R     LA + +  M S G   ++     FIR   SD     G E+L  M+   ++P   
Sbjct: 248 RVHGLELAREFVEHMLSRGRHLNAAVLSLFIRKYCSDGYFDKGWELLMGMKHYGIRPDIV 307

Query: 365 TIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACD---TMDKPERAIKIFAKM 421
                  +  KA  L  A ++L ++      +   +  +  D    + KPE AIK+    
Sbjct: 308 AFTVFIDKLCKAGFLKEATSVLFKLKLFGISQDSVSVSSVIDGFCKVGKPEEAIKLIHSF 367

Query: 422 RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQV-------DSAKRINAIE--MDMARNN 472
           R  LRP+I  Y    S   +         +F ++       D       I+   ++ R +
Sbjct: 368 R--LRPNIFVYSSFLSNICSTGDMLRASTIFQEIFELGLLPDCVCYTTMIDGYCNLGRTD 425

Query: 473 --IQHSHISMKN-----------LLKALGAEGMIRELIQYFCDSKT---PLGTPTYNTVL 516
              Q+    +K+           L+ A    G I +    F + KT    L   TYN ++
Sbjct: 426 KAFQYFGALLKSGNPPSLTTSTILIGACSRFGSISDAESVFRNMKTEGLKLDVVTYNNLM 485

Query: 517 HSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFY 576
           H   +  + ++  E+  +M++ GI P+ ATYNI+I    +      A+ ++S ++R GF 
Sbjct: 486 HGYGKTHQLNKVFELIDEMRSAGISPDVATYNILIHSMVVRGYIDEANEIISELIRRGFV 545

Query: 577 PQTMTYTALIKILLDYGDFDEALNLL----------DLVSLEGIPH-------------- 612
           P T+ +T +I      GDF EA  L           D+V+   + H              
Sbjct: 546 PSTLAFTDVIGGFSKRGDFQEAFILWFYMADLRMKPDVVTCSALLHGYCKAQRMEKAIVL 605

Query: 613 -----------DVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVN 661
                      DV+LYNT++   C  G I+    +I  M Q  + P+ ST H +  G   
Sbjct: 606 FNKLLDAGLKPDVVLYNTLIHGYCSVGDIEKACELIGLMVQRGMLPNESTHHALVLGLEG 665

Query: 662 CGFHNSAMEALQVLSMRMLCEEV 684
             F NS   A       ML EE+
Sbjct: 666 KRFVNSETHA------SMLLEEI 682


>gi|147862640|emb|CAN81487.1| hypothetical protein VITISV_033285 [Vitis vinifera]
          Length = 1024

 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 120/550 (21%), Positives = 228/550 (41%), Gaps = 42/550 (7%)

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
           M+EK +  N   Y L+++ +C+ G ++EA  L   +GE+ G+ P    Y        +  
Sbjct: 254 MDEKGLNPNEFIYSLVIEGMCQVGDIDEAVELKRSMGEK-GLVPNTYTYTIITAGLCRAK 312

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK-HYSLSIFSLR 231
            M  A L  + M    +  +    + L+   + + ++  V  I +  +     +++ +  
Sbjct: 313 RMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYN 372

Query: 232 KFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRT----SEGRLRSSRLDIPIPL---- 283
             +    +   ++ A E L+ MV L        +RT     EG  R   +   + L    
Sbjct: 373 VLIHGLCKFGKMEKAAEILKGMVTLGCKPN---SRTFCLLIEGYCREHNMGRALELLDEM 429

Query: 284 ---NALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVS 340
              N +P       S+  +I+     ++  LA +L+ +M   GL+P+   Y   I A  S
Sbjct: 430 EKRNLVPS----AVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIMAYAS 485

Query: 341 DRGLRNGMEVLKIMQQNNLKPQDSTIATLSVEC-SKALELDLAEALLDQI-SRCTNPKP- 397
           +  +     +L  M  + + P D       + C SKA +++ A   L +I  R   P   
Sbjct: 486 EGRIEEARRLLDGMSCSGVAP-DIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAV 544

Query: 398 -FSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQV 455
            F AF+       K   A K F +M    L P+   Y +L      +N  ++ GN+   +
Sbjct: 545 TFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVL------INGHFKAGNLMEAL 598

Query: 456 DSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TY 512
              +R++A+ +     ++Q     +  LLK     G ++E ++ F + K     P   TY
Sbjct: 599 SIFRRLHALGV---LPDVQTCSAFIHGLLK----NGRVQEALKVFSELKEKGLVPDVFTY 651

Query: 513 NTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVR 572
           ++++    +  E  +A E+  +M   GI PN   YN ++D        + A  L   M  
Sbjct: 652 SSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPE 711

Query: 573 DGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDV 632
            G  P ++TY+ +I       +  EA +L   +  +G+     +YN ++   C++G ++ 
Sbjct: 712 KGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEK 771

Query: 633 IEFIIEQMHQ 642
              +  +M Q
Sbjct: 772 AMNLFREMLQ 781



 Score = 68.9 bits (167), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 111/556 (19%), Positives = 214/556 (38%), Gaps = 74/556 (13%)

Query: 124  CYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDL 183
            CY  ++  L K G +EEAS  +  +  R G+ P    + +F+   +K   M  A    D 
Sbjct: 510  CYNAIISCLSKAGKMEEASTYLLEIQGR-GLKPDAVTFGAFILGYSKTGKMTEAAKYFDE 568

Query: 184  MDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDL 243
            M    +  N   YT L+       NL              +LSIF   + + +   L D+
Sbjct: 569  MLDHGLMPNNPLYTVLINGHFKAGNLME------------ALSIF---RRLHALGVLPDV 613

Query: 244  KSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLR--------WS 295
            ++    +                   G L++ R+       AL V   L+        ++
Sbjct: 614  QTCSAFIH------------------GLLKNGRVQ-----EALKVFSELKEKGLVPDVFT 650

Query: 296  FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
            +S +I    +      A +L  +M   G+ P+   Y+  +  +     ++   ++   M 
Sbjct: 651  YSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMP 710

Query: 356  QNNLKPQDSTIATLSVECSKALELDLAEALLDQI-SRCTNPKPF--SAFLAACDTMDKPE 412
            +  L+P   T +T+     K+  +  A +L  ++ S+   P  F  +A +  C      E
Sbjct: 711  EKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDME 770

Query: 413  RAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNN 472
            +A+ +F +M QK      ++  L   +       E   +F +             M    
Sbjct: 771  KAMNLFREMLQKGFATTLSFNTLIDGYCKSCKIQEASQLFQE-------------MIAKQ 817

Query: 473  IQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAM 529
            I   H++   ++      G + E   L +   +    + T TY ++++   +  +S    
Sbjct: 818  IMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVF 877

Query: 530  EIFKQMKTCGIPPNAATYNIMIDC-C---SIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
             +F++M   G+ P+  TY ++I   C   +++  FK    L   +V  G   +   +  L
Sbjct: 878  ALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFK----LRDEVVGKGMLTKGTIHDLL 933

Query: 586  IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
            I  L    D  EA  LLD +   G+   +   NT+++   E G++D    + E +    +
Sbjct: 934  ITALCKREDLTEASKLLDEMGELGLKPSLAACNTLVRSFHEAGKMDEATRVFEGVKSLGL 993

Query: 646  QPDPSTCHFVFSGYVN 661
             PD +T   + +G +N
Sbjct: 994  VPDTTTLIDLVNGNLN 1009



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/247 (22%), Positives = 96/247 (38%), Gaps = 41/247 (16%)

Query: 458 AKRINAIEM---DMARNNIQHSHISMKNLLKALGAEGMIRELIQ---YFCDSKTPLGTPT 511
           AKR+N  ++   +M +  ++  + +   L+     EG I E+++          P+   T
Sbjct: 311 AKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLIT 370

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPN---------------------------- 543
           YN ++H L +  +  +A EI K M T G  PN                            
Sbjct: 371 YNVLIHGLCKFGKMEKAAEILKGMVTLGCKPNSRTFCLLIEGYCREHNMGRALELLDEME 430

Query: 544 -------AATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFD 596
                  A +Y  MI+     +    A+ L+  M   G  P  + Y+ LI      G  +
Sbjct: 431 KRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIMAYASEGRIE 490

Query: 597 EALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVF 656
           EA  LLD +S  G+  D+  YN I+    + G+++     + ++    ++PD  T     
Sbjct: 491 EARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFI 550

Query: 657 SGYVNCG 663
            GY   G
Sbjct: 551 LGYSKTG 557



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 78/171 (45%), Gaps = 4/171 (2%)

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           Y+ V+  + +  +   A+E+ + M   G+ PN  TY I+       +    A      M 
Sbjct: 266 YSLVIEGMCQVGDIDEAVELKRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQ 325

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
           + G  P     +ALI   +  GD DE L + D++   GIP +++ YN ++   C+ G+++
Sbjct: 326 KTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKME 385

Query: 632 VIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHN--SAMEALQVLSMRML 680
               I++ M     +P+  T   +  GY  C  HN   A+E L  +  R L
Sbjct: 386 KAAEILKGMVTLGCKPNSRTFCLLIEGY--CREHNMGRALELLDEMEKRNL 434



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 84/408 (20%), Positives = 151/408 (37%), Gaps = 24/408 (5%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           +S VI    +  +   A +L   M   GL P+++TY      +   + +       + MQ
Sbjct: 266 YSLVIEGMCQVGDIDEAVELKRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQ 325

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPK---PFSAFLAACDTMDKPE 412
           +  LKP  +  + L     +  ++D    + D +  C  P     ++  +       K E
Sbjct: 326 KTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKME 385

Query: 413 RAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM--DMA 469
           +A +I   M     +P+ RT+ LL      +     E NM           A+E+  +M 
Sbjct: 386 KAAEILKGMVTLGCKPNSRTFCLL------IEGYCREHNMG---------RALELLDEME 430

Query: 470 RNNIQHSHISMKNLLKAL---GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESH 526
           + N+  S +S   ++  L       +  +L++    S        Y+ ++ +        
Sbjct: 431 KRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIMAYASEGRIE 490

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
            A  +   M   G+ P+   YN +I C S     + AS  +  +   G  P  +T+ A I
Sbjct: 491 EARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFI 550

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
                 G   EA    D +   G+  +  LY  ++    + G +     I  ++H   V 
Sbjct: 551 LGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRRLHALGVL 610

Query: 647 PDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDF 694
           PD  TC     G +  G    A++    L  + L  +V T     S F
Sbjct: 611 PDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGF 658



 Score = 49.7 bits (117), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 30/151 (19%), Positives = 64/151 (42%)

Query: 513 NTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVR 572
           N++L  L++        +++  M    +  +  TY  ++         + A  ++  M  
Sbjct: 197 NSLLKDLLKCGMMELFWKVYNGMLDAKMGFDVYTYTYLVGALCKTGDLRGAKRVLIEMDE 256

Query: 573 DGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDV 632
            G  P    Y+ +I+ +   GD DEA+ L   +  +G+  +   Y  I    C   R++ 
Sbjct: 257 KGLNPNEFIYSLVIEGMCQVGDIDEAVELKRSMGEKGLVPNTYTYTIITAGLCRAKRMNE 316

Query: 633 IEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
            +   E+M +  ++PD + C  +  G++  G
Sbjct: 317 AKLTFEEMQKTGLKPDYNACSALIDGFMREG 347


>gi|297826581|ref|XP_002881173.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297327012|gb|EFH57432.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 917

 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/280 (27%), Positives = 128/280 (45%), Gaps = 16/280 (5%)

Query: 398 FSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVD 456
           FSA ++A       E AI +F  M++  LRP++ TY  +      ++A  + G  F QV 
Sbjct: 271 FSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAV------IDACGKGGMEFKQV- 323

Query: 457 SAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGM---IRELIQYFCDSKTPLGTPTYN 513
            AK  +    +M RN +Q   I+  +LL      G+    R L     + +      +YN
Sbjct: 324 -AKFFD----EMQRNCVQPDRITFNSLLAVCSRGGLWEAARNLFDEMSNRRIEQDVFSYN 378

Query: 514 TVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRD 573
           T+L ++ +  +   A EI  QM    I PN  +Y+ +ID  +    F  A  L   M   
Sbjct: 379 TLLDAICKGGQMDLAFEILAQMPAKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYL 438

Query: 574 GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVI 633
                 ++Y  L+ I    G  +EAL++L  ++  GI  DV+ YN +L    ++G+ D +
Sbjct: 439 NIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEV 498

Query: 634 EFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           + +  +M +  V P+  T   +  GY   G +  AME  +
Sbjct: 499 KKVFAEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEVFR 538



 Score = 86.7 bits (213), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 112/458 (24%), Positives = 192/458 (41%), Gaps = 80/458 (17%)

Query: 294 WSFSDVIHACGRTQNSGLAEQ---LMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEV 350
           ++FS +I A GR   SGL E+   +   M+  GL+P+  TY+  I A       + GME 
Sbjct: 269 YAFSALISAYGR---SGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACG-----KGGMEF 320

Query: 351 LKI------MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQIS-RCTNPKPFS--AF 401
            ++      MQ+N ++P   T  +L   CS+    + A  L D++S R      FS    
Sbjct: 321 KQVAKFFDEMQRNCVQPDRITFNSLLAVCSRGGLWEAARNLFDEMSNRRIEQDVFSYNTL 380

Query: 402 LAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMF-------- 452
           L A     + + A +I A+M  K + P++ +Y  +   F       E  N+F        
Sbjct: 381 LDAICKGGQMDLAFEILAQMPAKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLNI 440

Query: 453 --------------SQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQ 498
                         ++V  ++    I  +MA   I+   ++   LL   G +G   E+ +
Sbjct: 441 ALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKK 500

Query: 499 YFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCS 555
            F + K     P   TY+T++    +      AME+F++ K+ G+  +   Y+ +ID   
Sbjct: 501 VFAEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEVFREFKSAGLRADVVLYSALIDALC 560

Query: 556 IIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL---------LDYGDFDE----ALNLL 602
                 SA +L+  M ++G  P  +TY ++I             DY +       +  L 
Sbjct: 561 KNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMERSADYSNGGSLPFSSSALS 620

Query: 603 DLVSLEGIPHDVLLY-------NTILKKACEKG--RIDVIEFIIEQMHQNKVQPDPSTCH 653
           +L   EG    + L+       N  + K C++G   +  I  +  +MHQ +++P+  T  
Sbjct: 621 ELTETEG-NRVIQLFGQLTSEGNNRMTKDCKEGMQELSCILEVFRKMHQLEIKPNVVT-- 677

Query: 654 FVFSGYVN-CGFHNSAMEALQVLSMRMLCEEVSTLEEK 690
             FS  +N C   NS  +A       ML EE+   + K
Sbjct: 678 --FSAILNACSRCNSFEDA------SMLLEELRLFDNK 707



 Score = 86.3 bits (212), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 89/434 (20%), Positives = 175/434 (40%), Gaps = 22/434 (5%)

Query: 297 SDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQ 356
           S +I   GR     +A+++     S G   + + +   I A          + V   M++
Sbjct: 237 SAMISTLGRYGKVTIAKRIFETAFSGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKE 296

Query: 357 NNLKPQDSTIATLSVECSKA-LELDLAEALLDQISR-CTNPK--PFSAFLAACDTMDKPE 412
             L+P   T   +   C K  +E        D++ R C  P    F++ LA C      E
Sbjct: 297 YGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNCVQPDRITFNSLLAVCSRGGLWE 356

Query: 413 RAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471
            A  +F +M  +++  D+ +Y  L      ++A  + G    Q+D A  I A    M   
Sbjct: 357 AARNLFDEMSNRRIEQDVFSYNTL------LDAICKGG----QMDLAFEILA---QMPAK 403

Query: 472 NIQHSHISMKNLLKALGAEGMIRELIQYFCDSK---TPLGTPTYNTVLHSLVEAQESHRA 528
            I  + +S   ++      G   E +  F + +     L   +YNT+L    +   S  A
Sbjct: 404 RIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLNIALDRVSYNTLLSIYTKVGRSEEA 463

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
           ++I ++M + GI  +  TYN ++        +     + + M R+   P  +TY+ LI  
Sbjct: 464 LDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFAEMKREHVLPNLLTYSTLIDG 523

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
               G + EA+ +       G+  DV+LY+ ++   C+ G +     +I++M +  + P+
Sbjct: 524 YSKGGLYKEAMEVFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPN 583

Query: 649 PSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDFEDLILAE-DSEAES 707
             T + +   +        + +     S+      +S L E   +    +  +  SE  +
Sbjct: 584 VVTYNSIIDAFGRSATMERSADYSNGGSLPFSSSALSELTETEGNRVIQLFGQLTSEGNN 643

Query: 708 RILQFCEDSNENLA 721
           R+ + C++  + L+
Sbjct: 644 RMTKDCKEGMQELS 657



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 100/468 (21%), Positives = 183/468 (39%), Gaps = 51/468 (10%)

Query: 119 GLNNKCYLL--MMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVH 176
           G  N  Y    ++ A  + G  EEA ++   + E YG+ P L  YN+ + AC K   M  
Sbjct: 263 GYGNTVYAFSALISAYGRSGLHEEAISVFNSMKE-YGLRPNLVTYNAVIDACGK-GGMEF 320

Query: 177 ANLC--LDLMDSRMVGKNEVTYTELLKL----AVWQKNLSAVHEIWEDYIKHYSLSIFSL 230
             +    D M    V  + +T+  LL +     +W+   +   E+    I+     +FS 
Sbjct: 321 KQVAKFFDEMQRNCVQPDRITFNSLLAVCSRGGLWEAARNLFDEMSNRRIEQ---DVFSY 377

Query: 231 RKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTS-EGRLRSSRLDIPIPLNALPVM 289
              + +  +   +  A+E L  M A  +M  +    T  +G  ++ R D    LN    M
Sbjct: 378 NTLLDAICKGGQMDLAFEILAQMPAKRIMPNVVSYSTVIDGFAKAGRFD--EALNLFGEM 435

Query: 290 KVL-----RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGL 344
           + L     R S++ ++    +   S  A  ++ +M S+G++    TY+  +         
Sbjct: 436 RYLNIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKY 495

Query: 345 RNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAA 404
               +V   M++ ++ P   T +TL    SK      A  +  +            + A 
Sbjct: 496 DEVKKVFAEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEVFREFKSAGLRADVVLYSAL 555

Query: 405 CDTMDKP---ERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKR 460
            D + K      A+ +  +M ++ + P++ TY  +   FG  +A  E    +S   S   
Sbjct: 556 IDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGR-SATMERSADYSNGGS--- 611

Query: 461 INAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLV 520
                       +  S  ++  L +  G       +IQ F      L +   N +     
Sbjct: 612 ------------LPFSSSALSELTETEG-----NRVIQLFGQ----LTSEGNNRMTKDCK 650

Query: 521 EA-QESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALV 567
           E  QE    +E+F++M    I PN  T++ +++ CS    F+ AS L+
Sbjct: 651 EGMQELSCILEVFRKMHQLEIKPNVVTFSAILNACSRCNSFEDASMLL 698


>gi|255548724|ref|XP_002515418.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545362|gb|EEF46867.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1113

 Score = 97.4 bits (241), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 147/674 (21%), Positives = 273/674 (40%), Gaps = 73/674 (10%)

Query: 54  ATQMQIVDALCR-GERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRM 112
            T   ++DALC  G+   A  L + +  + H      +  +L+  +   D   V E W  
Sbjct: 300 VTYTVLIDALCTAGKLDDAMELFVKMKASSHKPDRVTYITMLDKFSDCGDLGRVKEFWSE 359

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
           ME      +   + +++ ALCK G ++EA +L+  +  + G+ P L  YN+ +    +++
Sbjct: 360 MEADGYAPDVITFTILVNALCKAGNIDEAFHLLDVM-RKQGVLPNLHTYNTLISGLLRVN 418

Query: 173 SMVHANLCLDLMDS-RMVGKNEVTYTELLKLAVWQKNL---SAVHEIWEDYIKHYSLSIF 228
            +  A   LDL ++   +G     YT +L +  + K+     A+    +  I+  + +I 
Sbjct: 419 RLDDA---LDLFNNMETLGVVPTAYTYILFIDFYGKSGRSDKALETFEKMKIRGIAPNIV 475

Query: 229 SLRKFVWSFT---RLRDLKSAYETLQ------HMVALAMMGKLYINRTSEGRLRSSRLDI 279
           +    ++S     RLR+ K  +  L+        V   MM K Y         ++ ++D 
Sbjct: 476 ACNASLYSLAEMGRLREAKVIFNRLKSNGLAPDSVTYNMMMKCYS--------KAGQVDE 527

Query: 280 PIPL-------NALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYD 332
            I L          P + V+  S  + ++  GR      A ++  +++ + L P+  TY+
Sbjct: 528 AIELLSDMSENQCEPDIIVIN-SLINTLYKAGRVDE---AWKMFCRLKDMKLAPTVVTYN 583

Query: 333 GFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRC 392
             I  +  +  ++  ME+   M  N   P   T  T+     K  E+DLA  +L +++  
Sbjct: 584 TLIAGLGKEGQVQRAMELFASMTGNGCPPNTITFNTILDCLCKNDEVDLALKMLYKMTT- 642

Query: 393 TNPKP----FSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTY-ELLFSLFGN------ 441
            N  P    F+  +       +   AI +F +M++ L PD  T   LL  +  N      
Sbjct: 643 MNCMPDVLTFNTIIHGLVIEKRVSDAIWLFHQMKKMLTPDCVTLCTLLPGVVKNGLMEDA 702

Query: 442 --------------VNAPYEE---GNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLL 484
                         V+  + E   G + +Q  + K I   +  +     +   + M  ++
Sbjct: 703 FKIAEDFVHRLGVYVDRRFWEDLMGGILTQAGTEKTILFGDRLVCGRVCKDGSVLMP-II 761

Query: 485 KALGAEGMIRELIQYFCDSKTPLGT-PT---YNTVLHSLVEAQESHRAMEIFKQMKTCGI 540
           K L            F      LG  PT   YN ++   +       A  +F +MK  G 
Sbjct: 762 KVLCKHKQALVAQSVFIRFTKELGVKPTLESYNFLIEGFLGVHNDEMAWNLFTEMKNAGC 821

Query: 541 PPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALN 600
            P+  TYN+++D             L   M+     P T+T+  +I  L+     D+AL+
Sbjct: 822 APDVFTYNLLLDAHGKSGKINELFELYEQMICSSCKPNTITHNIIIANLVKSNSLDKALD 881

Query: 601 LL-DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
           L  DLVS +  P     Y  +L    + GR++  + + E+M     +P+ +  + + +G+
Sbjct: 882 LFYDLVSGDFSPTPC-TYGPLLDGLLKSGRLEEAKELFEEMVDYGCRPNNAIYNILINGF 940

Query: 660 VNCGFHNSAMEALQ 673
              G  N+A E  +
Sbjct: 941 GKTGDVNTACELFK 954



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 117/566 (20%), Positives = 222/566 (39%), Gaps = 85/566 (15%)

Query: 153  GIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAV 212
            GI P +   N+ L + A++  +  A +  + + S  +  + VTY  ++K       +   
Sbjct: 469  GIAPNIVACNASLYSLAEMGRLREAKVIFNRLKSNGLAPDSVTYNMMMKCYSKAGQVDEA 528

Query: 213  HEIWEDYIKHYS----LSIFSLRKFVWS----------FTRLRDLKSAYETLQHMVALAM 258
             E+  D  ++      + I SL   ++           F RL+D+K A   + +   +A 
Sbjct: 529  IELLSDMSENQCEPDIIVINSLINTLYKAGRVDEAWKMFCRLKDMKLAPTVVTYNTLIAG 588

Query: 259  MGKLYINRTSEGRL-RSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLML 317
            +GK       EG++ R+  L   +  N  P   +   +F+ ++    +     LA +++ 
Sbjct: 589  LGK-------EGQVQRAMELFASMTGNGCPPNTI---TFNTILDCLCKNDEVDLALKMLY 638

Query: 318  QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL--SVECSK 375
            +M ++   P   T++  I  +V ++ + + + +   M++  L P   T+ TL   V  + 
Sbjct: 639  KMTTMNCMPDVLTFNTIIHGLVIEKRVSDAIWLFHQMKKM-LTPDCVTLCTLLPGVVKNG 697

Query: 376  ALE--LDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAI------------------ 415
             +E    +AE  + ++    + + +   +    T    E+ I                  
Sbjct: 698  LMEDAFKIAEDFVHRLGVYVDRRFWEDLMGGILTQAGTEKTILFGDRLVCGRVCKDGSVL 757

Query: 416  ----KIFAKMRQKL---------------RPDIRTYELLFSLFGNVNAPYEEGNMFSQVD 456
                K+  K +Q L               +P + +Y  L   F  V+      N+F+++ 
Sbjct: 758  MPIIKVLCKHKQALVAQSVFIRFTKELGVKPTLESYNFLIEGFLGVHNDEMAWNLFTEMK 817

Query: 457  SAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELI----QYFCDSKTPLGTPTY 512
            +A        D+   N+         LL A G  G I EL     Q  C S  P  T T+
Sbjct: 818  NA----GCAPDVFTYNL---------LLDAHGKSGKINELFELYEQMICSSCKP-NTITH 863

Query: 513  NTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVR 572
            N ++ +LV++    +A+++F  + +    P   TY  ++D        + A  L   MV 
Sbjct: 864  NIIIANLVKSNSLDKALDLFYDLVSGDFSPTPCTYGPLLDGLLKSGRLEEAKELFEEMVD 923

Query: 573  DGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDV 632
             G  P    Y  LI      GD + A  L   +  EGI  D+  Y +++   CE GR+D 
Sbjct: 924  YGCRPNNAIYNILINGFGKTGDVNTACELFKRMVREGIRPDLKSYTSLVGCLCEAGRVDD 983

Query: 633  IEFIIEQMHQNKVQPDPSTCHFVFSG 658
                 E++ Q  +  D    + +  G
Sbjct: 984  ALHYFEKLKQTGLYLDSIAYNLMIDG 1009



 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 84/383 (21%), Positives = 168/383 (43%), Gaps = 20/383 (5%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +FS ++ A G+ +++   + L+ +M+SLGL+P+ +TY   IR +     +     ++K M
Sbjct: 231 TFSALMVATGKRRDTETVKSLLEEMESLGLKPNIYTYTICIRVLGRAGRIDEACRIMKRM 290

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPE-- 412
           + +   P   T   L      A +LD A  L  ++   ++      ++   D        
Sbjct: 291 EDDGCGPDVVTYTVLIDALCTAGKLDDAMELFVKMKASSHKPDRVTYITMLDKFSDCGDL 350

Query: 413 -RAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
            R  + +++M      PD+ T+ +L      VNA  + GN    +D A  +  +   M +
Sbjct: 351 GRVKEFWSEMEADGYAPDVITFTIL------VNALCKAGN----IDEAFHLLDV---MRK 397

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPT---YNTVLHSLVEAQESHR 527
             +  +  +   L+  L     + + +  F + +T    PT   Y   +    ++  S +
Sbjct: 398 QGVLPNLHTYNTLISGLLRVNRLDDALDLFNNMETLGVVPTAYTYILFIDFYGKSGRSDK 457

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A+E F++MK  GI PN    N  +   + +   + A  + + +  +G  P ++TY  ++K
Sbjct: 458 ALETFEKMKIRGIAPNIVACNASLYSLAEMGRLREAKVIFNRLKSNGLAPDSVTYNMMMK 517

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
                G  DEA+ LL  +S      D+++ N+++    + GR+D    +  ++   K+ P
Sbjct: 518 CYSKAGQVDEAIELLSDMSENQCEPDIIVINSLINTLYKAGRVDEAWKMFCRLKDMKLAP 577

Query: 648 DPSTCHFVFSGYVNCGFHNSAME 670
              T + + +G    G    AME
Sbjct: 578 TVVTYNTLIAGLGKEGQVQRAME 600



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 79/369 (21%), Positives = 149/369 (40%), Gaps = 26/369 (7%)

Query: 318 QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKAL 377
           +M+  G   ++++Y+G I  ++     R  +E+ + M    LKP   T + L V   K  
Sbjct: 184 KMREAGFHLNAYSYNGLIHLLLQSGLCREALEMYRRMVLEGLKPSLKTFSALMVATGKRR 243

Query: 378 ELDLAEALLDQISRCT---NPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYE 433
           + +  ++LL+++       N   ++  +       + + A +I  +M      PD+ TY 
Sbjct: 244 DTETVKSLLEEMESLGLKPNIYTYTICIRVLGRAGRIDEACRIMKRMEDDGCGPDVVTYT 303

Query: 434 LLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQH-----SHISMKNLLKALG 488
           +L                 +   + K  +A+E+ +      H     ++I+M +     G
Sbjct: 304 VLID---------------ALCTAGKLDDAMELFVKMKASSHKPDRVTYITMLDKFSDCG 348

Query: 489 AEGMIRELIQYF-CDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATY 547
             G ++E       D   P    T+  ++++L +A     A  +   M+  G+ PN  TY
Sbjct: 349 DLGRVKEFWSEMEADGYAP-DVITFTILVNALCKAGNIDEAFHLLDVMRKQGVLPNLHTY 407

Query: 548 NIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSL 607
           N +I     +     A  L + M   G  P   TY   I      G  D+AL   + + +
Sbjct: 408 NTLISGLLRVNRLDDALDLFNNMETLGVVPTAYTYILFIDFYGKSGRSDKALETFEKMKI 467

Query: 608 EGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNS 667
            GI  +++  N  L    E GR+   + I  ++  N + PD  T + +   Y   G  + 
Sbjct: 468 RGIAPNIVACNASLYSLAEMGRLREAKVIFNRLKSNGLAPDSVTYNMMMKCYSKAGQVDE 527

Query: 668 AMEALQVLS 676
           A+E L  +S
Sbjct: 528 AIELLSDMS 536



 Score = 79.3 bits (194), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 92/395 (23%), Positives = 158/395 (40%), Gaps = 62/395 (15%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +F+ +++A  +  N   A  L+  M+  G+ P+ HTY+  I  ++    L + +++   M
Sbjct: 371 TFTILVNALCKAGNIDEAFHLLDVMRKQGVLPNLHTYNTLISGLLRVNRLDDALDLFNNM 430

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQIS-RCTNPKPFS--AFLAACDTMDKP 411
           +   + P   T         K+   D A    +++  R   P   +  A L +   M + 
Sbjct: 431 ETLGVVPTAYTYILFIDFYGKSGRSDKALETFEKMKIRGIAPNIVACNASLYSLAEMGRL 490

Query: 412 ERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM--DM 468
             A  IF +++   L PD  TY ++   +              QVD A     IE+  DM
Sbjct: 491 REAKVIFNRLKSNGLAPDSVTYNMMMKCYSKA----------GQVDEA-----IELLSDM 535

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRELIQYFC---DSKTPLGTPTYNTVLHSLVEAQES 525
           + N  +   I + +L+  L   G + E  + FC   D K      TYNT++  L +  + 
Sbjct: 536 SENQCEPDIIVINSLINTLYKAGRVDEAWKMFCRLKDMKLAPTVVTYNTLIAGLGKEGQV 595

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
            RAME+F  M   G PPN  T+N ++DC                                
Sbjct: 596 QRAMELFASMTGNGCPPNTITFNTILDC-------------------------------- 623

Query: 586 IKILLDYGDFDEALNLL-DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
              L    + D AL +L  + ++  +P DVL +NTI+     + R+    ++  QM +  
Sbjct: 624 ---LCKNDEVDLALKMLYKMTTMNCMP-DVLTFNTIIHGLVIEKRVSDAIWLFHQM-KKM 678

Query: 645 VQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRM 679
           + PD  T   +  G V  G    A +  +    R+
Sbjct: 679 LTPDCVTLCTLLPGVVKNGLMEDAFKIAEDFVHRL 713



 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 106/239 (44%), Gaps = 13/239 (5%)

Query: 412  ERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
            E A  +F +M+     PD+ TY LL    G      E   ++ Q+        I      
Sbjct: 807  EMAWNLFTEMKNAGCAPDVFTYNLLLDAHGKSGKINELFELYEQM--------ICSSCKP 858

Query: 471  NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP-TYNTVLHSLVEAQESHRAM 529
            N I H +I + NL+K+   +  +           +P  TP TY  +L  L+++     A 
Sbjct: 859  NTITH-NIIIANLVKSNSLDKALDLFYDLVSGDFSP--TPCTYGPLLDGLLKSGRLEEAK 915

Query: 530  EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
            E+F++M   G  PN A YNI+I+         +A  L   MVR+G  P   +YT+L+  L
Sbjct: 916  ELFEEMVDYGCRPNNAIYNILINGFGKTGDVNTACELFKRMVREGIRPDLKSYTSLVGCL 975

Query: 590  LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
             + G  D+AL+  + +   G+  D + YN ++       RI+    + ++M    + PD
Sbjct: 976  CEAGRVDDALHYFEKLKQTGLYLDSIAYNLMIDGLGRSHRIEEALTLYDEMQSRGINPD 1034



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 83/363 (22%), Positives = 151/363 (41%), Gaps = 22/363 (6%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           +S++ +IH   ++     A ++  +M   GL+PS  T+   + A    R       +L+ 
Sbjct: 195 YSYNGLIHLLLQSGLCREALEMYRRMVLEGLKPSLKTFSALMVATGKRRDTETVKSLLEE 254

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI--SRCT-NPKPFSAFLAACDTMDK 410
           M+   LKP   T         +A  +D A  ++ ++    C  +   ++  + A  T  K
Sbjct: 255 MESLGLKPNIYTYTICIRVLGRAGRIDEACRIMKRMEDDGCGPDVVTYTVLIDALCTAGK 314

Query: 411 PERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
            + A+++F KM+    +PD  TY  +              + FS      R+     +M 
Sbjct: 315 LDDAMELFVKMKASSHKPDRVTYITML-------------DKFSDCGDLGRVKEFWSEME 361

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESH 526
            +      I+   L+ AL   G I E        +     P   TYNT++  L+      
Sbjct: 362 ADGYAPDVITFTILVNALCKAGNIDEAFHLLDVMRKQGVLPNLHTYNTLISGLLRVNRLD 421

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSII-RCFKSASALVSMMVRDGFYPQTMTYTAL 585
            A+++F  M+T G+ P A TY + ID      R  K+      M +R G  P  +   A 
Sbjct: 422 DALDLFNNMETLGVVPTAYTYILFIDFYGKSGRSDKALETFEKMKIR-GIAPNIVACNAS 480

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           +  L + G   EA  + + +   G+  D + YN ++K   + G++D    ++  M +N+ 
Sbjct: 481 LYSLAEMGRLREAKVIFNRLKSNGLAPDSVTYNMMMKCYSKAGQVDEAIELLSDMSENQC 540

Query: 646 QPD 648
           +PD
Sbjct: 541 EPD 543



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 74/311 (23%), Positives = 128/311 (41%), Gaps = 20/311 (6%)

Query: 295  SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
            S++ +I       N  +A  L  +M++ G  P   TY+  + A      +    E+ + M
Sbjct: 792  SYNFLIEGFLGVHNDEMAWNLFTEMKNAGCAPDVFTYNLLLDAHGKSGKINELFELYEQM 851

Query: 355  QQNNLKPQDSTIATLSVECSKALELDLAEALL-DQISRCTNPKP--FSAFLAACDTMDKP 411
              ++ KP   T   +     K+  LD A  L  D +S   +P P  +   L       + 
Sbjct: 852  ICSSCKPNTITHNIIIANLVKSNSLDKALDLFYDLVSGDFSPTPCTYGPLLDGLLKSGRL 911

Query: 412  ERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
            E A ++F +M     RP+   Y +L + FG      + G++ +  +  KR       M R
Sbjct: 912  EEAKELFEEMVDYGCRPNNAIYNILINGFG------KTGDVNTACELFKR-------MVR 958

Query: 471  NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTP---LGTPTYNTVLHSLVEAQESHR 527
              I+    S  +L+  L   G + + + YF   K     L +  YN ++  L  +     
Sbjct: 959  EGIRPDLKSYTSLVGCLCEAGRVDDALHYFEKLKQTGLYLDSIAYNLMIDGLGRSHRIEE 1018

Query: 528  AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
            A+ ++ +M++ GI P+  TYN +I    +    + A  L   +   G  P   TY ALI+
Sbjct: 1019 ALTLYDEMQSRGINPDLFTYNSLILNLGVAGMVEQAGKLYEELQFIGLEPNVFTYNALIR 1078

Query: 588  ILLDYGDFDEA 598
                 G+ D A
Sbjct: 1079 GYSMSGNSDSA 1089



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 64/299 (21%), Positives = 133/299 (44%), Gaps = 20/299 (6%)

Query: 294  WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
            ++++ ++ A G++       +L  QM     +P++ T++  I  +V    L   +++   
Sbjct: 826  FTYNLLLDAHGKSGKINELFELYEQMICSSCKPNTITHNIIIANLVKSNSLDKALDLFYD 885

Query: 354  MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR--C-TNPKPFSAFLAACDTMDK 410
            +   +  P   T   L     K+  L+ A+ L +++    C  N   ++  +        
Sbjct: 886  LVSGDFSPTPCTYGPLLDGLLKSGRLEEAKELFEEMVDYGCRPNNAIYNILINGFGKTGD 945

Query: 411  PERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
               A ++F +M R+ +RPD+++Y  L      V    E G    +VD A  ++  E  + 
Sbjct: 946  VNTACELFKRMVREGIRPDLKSYTSL------VGCLCEAG----RVDDA--LHYFE-KLK 992

Query: 470  RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESH 526
            +  +    I+   ++  LG    I E +  + + ++    P   TYN+++ +L  A    
Sbjct: 993  QTGLYLDSIAYNLMIDGLGRSHRIEEALTLYDEMQSRGINPDLFTYNSLILNLGVAGMVE 1052

Query: 527  RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
            +A +++++++  G+ PN  TYN +I   S+     SA A+   M+  G  P T T+  L
Sbjct: 1053 QAGKLYEELQFIGLEPNVFTYNALIRGYSMSGNSDSAYAVYKRMMVGGCSPNTGTFAQL 1111



 Score = 42.7 bits (99), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 59/139 (42%)

Query: 532 FKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLD 591
           F +M+  G   NA +YN +I         + A  +   MV +G  P   T++AL+     
Sbjct: 182 FGKMREAGFHLNAYSYNGLIHLLLQSGLCREALEMYRRMVLEGLKPSLKTFSALMVATGK 241

Query: 592 YGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
             D +   +LL+ +   G+  ++  Y   ++     GRID    I+++M  +   PD  T
Sbjct: 242 RRDTETVKSLLEEMESLGLKPNIYTYTICIRVLGRAGRIDEACRIMKRMEDDGCGPDVVT 301

Query: 652 CHFVFSGYVNCGFHNSAME 670
              +       G  + AME
Sbjct: 302 YTVLIDALCTAGKLDDAME 320


>gi|242092708|ref|XP_002436844.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
 gi|241915067|gb|EER88211.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
          Length = 755

 Score = 97.4 bits (241), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 76/307 (24%), Positives = 119/307 (38%), Gaps = 33/307 (10%)

Query: 374 SKALELDLAEALLDQISRCTNPKPFSAF--------LAACDTMDKPERAIKIFAKMRQ-- 423
           S +L LD A  L D++  C  P    AF         A C +    ER + +F +M +  
Sbjct: 25  SGSLGLDEALKLFDELLHCARPASVRAFNQLLTVVSRAGCSS--ASERVVSLFTRMAREC 82

Query: 424 --KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQV-DSAKRINAIEMDMARNNIQHSHISM 480
             K+ P+  TY +L   F  +         F  +  +  R+N I               +
Sbjct: 83  SSKVAPNACTYSILIGCFCRMGRLEHGFAAFGLILKTGWRVNVI--------------VI 128

Query: 481 KNLLKALGAEGMIRELIQYFCDSKTPLGTP----TYNTVLHSLVEAQESHRAMEIFKQMK 536
             LLK L     + E         +  G P     YNTV++      +  +A  +F +M 
Sbjct: 129 SQLLKGLCDAKRVDEATDILLLRMSEFGCPPDVVAYNTVINGFFREGQVEKAYNLFLEMM 188

Query: 537 TCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFD 596
             GIPPN  TY  +ID     +    A  +   M+  G  P   TY  LI   L  G + 
Sbjct: 189 DQGIPPNVVTYTTVIDGLCKAQVVDRAKGVFQQMIDRGVKPDNGTYNCLIHGYLSTGKWK 248

Query: 597 EALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVF 656
           E + +L+ +S  G+  D + Y  +L   C+ GR        + M +  ++PD +    + 
Sbjct: 249 EVVQMLEEMSTHGLEPDCITYALLLDYLCKNGRCREARLFFDSMFRKGIKPDVAIYAILL 308

Query: 657 SGYVNCG 663
            GY   G
Sbjct: 309 HGYATKG 315



 Score = 79.0 bits (193), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 82/369 (22%), Positives = 151/369 (40%), Gaps = 22/369 (5%)

Query: 315 LMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECS 374
           L+L+M   G  P    Y+  I     +  +     +   M    + P   T  T+     
Sbjct: 148 LLLRMSEFGCPPDVVAYNTVINGFFREGQVEKAYNLFLEMMDQGIPPNVVTYTTVIDGLC 207

Query: 375 KALELDLAEALLDQ-ISRCTNPK--PFSAFLAACDTMDKPERAIKIFAKMR-QKLRPDIR 430
           KA  +D A+ +  Q I R   P    ++  +    +  K +  +++  +M    L PD  
Sbjct: 208 KAQVVDRAKGVFQQMIDRGVKPDNGTYNCLIHGYLSTGKWKEVVQMLEEMSTHGLEPDCI 267

Query: 431 TYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAE 490
           TY LL       N    E  +F   DS  R   I+ D+A   I         LL     +
Sbjct: 268 TYALLLDYLCK-NGRCREARLF--FDSMFR-KGIKPDVAIYAI---------LLHGYATK 314

Query: 491 GMIRELIQYFCDSKTPLGTP----TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAAT 546
           G + E+   F D     G       +N +  +  +      AM IF +M+  G+ P+  +
Sbjct: 315 GALSEM-HSFLDLMVGNGVSPNRRIFNIMFCAYAKKAMIEEAMHIFNKMRQQGLSPDVVS 373

Query: 547 YNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVS 606
           +  +ID    +     A    + M+ +G  P    +++L+  L   G +++A  L   V 
Sbjct: 374 FGALIDALCKLGRVDDAVLQFNQMINEGVTPNIFVFSSLVYGLCTVGKWEKAEELFFEVL 433

Query: 607 LEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHN 666
            +GI  D + +NT++   C +GR+   + +I+ M +  V+P+  + + + +G+   G  +
Sbjct: 434 DQGICVDAVFFNTLMCNLCNEGRVMEAQRLIDLMIRVGVRPNVISYNTLVAGHCLTGRID 493

Query: 667 SAMEALQVL 675
            A + L V+
Sbjct: 494 EAAKLLDVM 502



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 94/423 (22%), Positives = 169/423 (39%), Gaps = 40/423 (9%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTY----DGFIRAIVSDRGLRNGMEV 350
           +++ VI+   R      A  L L+M   G+ P+  TY    DG  +A V DR       V
Sbjct: 163 AYNTVINGFFREGQVEKAYNLFLEMMDQGIPPNVVTYTTVIDGLCKAQVVDR----AKGV 218

Query: 351 LKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDK 410
            + M    +KP + T   L        +      +L+++S          +    D + K
Sbjct: 219 FQQMIDRGVKPDNGTYNCLIHGYLSTGKWKEVVQMLEEMSTHGLEPDCITYALLLDYLCK 278

Query: 411 PER---AIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMF-----SQVDSAKRI 461
             R   A   F  M R+ ++PD+  Y +L   +    A  E  +       + V   +RI
Sbjct: 279 NGRCREARLFFDSMFRKGIKPDVAIYAILLHGYATKGALSEMHSFLDLMVGNGVSPNRRI 338

Query: 462 NAIEM-----------------DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSK 504
             I                    M +  +    +S   L+ AL   G + + +  F    
Sbjct: 339 FNIMFCAYAKKAMIEEAMHIFNKMRQQGLSPDVVSFGALIDALCKLGRVDDAVLQFNQMI 398

Query: 505 TPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYN-IMIDCCSIIRCF 560
               TP    ++++++ L    +  +A E+F ++   GI  +A  +N +M + C+  R  
Sbjct: 399 NEGVTPNIFVFSSLVYGLCTVGKWEKAEELFFEVLDQGICVDAVFFNTLMCNLCNEGRVM 458

Query: 561 KSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTI 620
           + A  L+ +M+R G  P  ++Y  L+      G  DEA  LLD++   G+  +   Y  +
Sbjct: 459 E-AQRLIDLMIRVGVRPNVISYNTLVAGHCLTGRIDEAAKLLDVMVSNGLKPNEFTYTIL 517

Query: 621 LKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEA-LQVLSMRM 679
           L+  C+  R+D    +  +M    V P  +T + +  G    G  + A E  L +++ R 
Sbjct: 518 LRGYCKARRVDDAYSLFREMLMKGVTPVVATYNTILHGLFQTGRFSEANELYLNMINSRT 577

Query: 680 LCE 682
            C+
Sbjct: 578 KCD 580



 Score = 71.6 bits (174), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 85/385 (22%), Positives = 154/385 (40%), Gaps = 14/385 (3%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ +IH    T       Q++ +M + GL+P   TY   +  +  +   R        M
Sbjct: 233 TYNCLIHGYLSTGKWKEVVQMLEEMSTHGLEPDCITYALLLDYLCKNGRCREARLFFDSM 292

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQI---SRCTNPKPFSAFLAACDTMDKP 411
            +  +KP  +  A L    +    L    + LD +       N + F+    A       
Sbjct: 293 FRKGIKPDVAIYAILLHGYATKGALSEMHSFLDLMVGNGVSPNRRIFNIMFCAYAKKAMI 352

Query: 412 ERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           E A+ IF KMRQ+ L PD+ ++  L      ++A  + G +    D+  + N +  +   
Sbjct: 353 EEAMHIFNKMRQQGLSPDVVSFGAL------IDALCKLGRV---DDAVLQFNQMINEGVT 403

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAME 530
            NI     S+   L  +G      EL     D    +    +NT++ +L        A  
Sbjct: 404 PNI-FVFSSLVYGLCTVGKWEKAEELFFEVLDQGICVDAVFFNTLMCNLCNEGRVMEAQR 462

Query: 531 IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590
           +   M   G+ PN  +YN ++    +      A+ L+ +MV +G  P   TYT L++   
Sbjct: 463 LIDLMIRVGVRPNVISYNTLVAGHCLTGRIDEAAKLLDVMVSNGLKPNEFTYTILLRGYC 522

Query: 591 DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650
                D+A +L   + ++G+   V  YNTIL    + GR      +   M  ++ + D  
Sbjct: 523 KARRVDDAYSLFREMLMKGVTPVVATYNTILHGLFQTGRFSEANELYLNMINSRTKCDIY 582

Query: 651 TCHFVFSGYVNCGFHNSAMEALQVL 675
           T + + +G     F + A +  + L
Sbjct: 583 TYNIILNGLCKNNFVDEAFKMFRRL 607



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 118/592 (19%), Positives = 230/592 (38%), Gaps = 108/592 (18%)

Query: 128 MMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHA-NLCLDLMDS 186
           +++ LC    ++EA++++      +G  P +  YN+ +    +   +  A NL L++MD 
Sbjct: 131 LLKGLCDAKRVDEATDILLLRMSEFGCPPDVVAYNTVINGFFREGQVEKAYNLFLEMMD- 189

Query: 187 RMVGKNEVTYTELL----KLAVWQKNLSAVHEIWEDYIK----------HYSLSIFSLRK 232
           + +  N VTYT ++    K  V  +      ++ +  +K          H  LS    ++
Sbjct: 190 QGIPPNVVTYTTVIDGLCKAQVVDRAKGVFQQMIDRGVKPDNGTYNCLIHGYLSTGKWKE 249

Query: 233 FVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRL--DIPIPLNALPVMK 290
            V     +       + + + + L  + K        GR R +RL  D        P + 
Sbjct: 250 VVQMLEEMSTHGLEPDCITYALLLDYLCK-------NGRCREARLFFDSMFRKGIKPDVA 302

Query: 291 VLRWSFSDVIHACGRTQNSGLAE--QLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGM 348
           +    ++ ++H  G      L+E    +  M   G+ P+   ++    A      +   M
Sbjct: 303 I----YAILLH--GYATKGALSEMHSFLDLMVGNGVSPNRRIFNIMFCAYAKKAMIEEAM 356

Query: 349 EVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPK--PFSAFLAAC 405
            +   M+Q  L P   +   L     K   +D A    +Q I+    P    FS+ +   
Sbjct: 357 HIFNKMRQQGLSPDVVSFGALIDALCKLGRVDDAVLQFNQMINEGVTPNIFVFSSLVYGL 416

Query: 406 DTMDKPERAIKIFAK------------------------------------MRQKLRPDI 429
            T+ K E+A ++F +                                    +R  +RP++
Sbjct: 417 CTVGKWEKAEELFFEVLDQGICVDAVFFNTLMCNLCNEGRVMEAQRLIDLMIRVGVRPNV 476

Query: 430 RTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL-- 487
            +Y  L +  G+         +  ++D A ++  +   M  N ++ +  +   LL+    
Sbjct: 477 ISYNTLVA--GHC--------LTGRIDEAAKLLDV---MVSNGLKPNEFTYTILLRGYCK 523

Query: 488 -----GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPP 542
                 A  + RE++       TP+   TYNT+LH L +      A E++  M       
Sbjct: 524 ARRVDDAYSLFREMLM---KGVTPV-VATYNTILHGLFQTGRFSEANELYLNMINSRTKC 579

Query: 543 NAATYNIMID-CCS---IIRCFKSASALVSMMVRDGFYPQ--TMTYTALIKILLDYGDFD 596
           +  TYNI+++  C    +   FK    L S   +D   PQ  ++T+  +I  LL  G  +
Sbjct: 580 DIYTYNIILNGLCKNNFVDEAFKMFRRLCS---KD---PQLDSVTFNIMIGALLKGGRKE 633

Query: 597 EALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
           +A++L   +S  G+  DV+ Y  I +   E+G +   + +   M ++   P+
Sbjct: 634 DAMDLFATISAYGLVPDVVTYRLIAENLIEEGSLGEFDGLFSAMEKSGTAPN 685



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 101/510 (19%), Positives = 189/510 (37%), Gaps = 72/510 (14%)

Query: 108 ETWRMMEEKEI-GLNNKC--YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSF 164
           E  +M+EE    GL   C  Y L++  LCK G   EA  L +    R GI P + +Y   
Sbjct: 249 EVVQMLEEMSTHGLEPDCITYALLLDYLCKNGRCREA-RLFFDSMFRKGIKPDVAIYAIL 307

Query: 165 L------GACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNL--SAVHEIW 216
           L      GA +++HS       LDLM    V  N   +  ++  A  +K +   A+H   
Sbjct: 308 LHGYATKGALSEMHSF------LDLMVGNGVSPNRRIFN-IMFCAYAKKAMIEEAMHIFN 360

Query: 217 EDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSR 276
           +   +  S  + S    + +  +L  +  A      M+   +   +++            
Sbjct: 361 KMRQQGLSPDVVSFGALIDALCKLGRVDDAVLQFNQMINEGVTPNIFV------------ 408

Query: 277 LDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIR 336
                              FS +++          AE+L  ++   G+   +  ++  + 
Sbjct: 409 -------------------FSSLVYGLCTVGKWEKAEELFFEVLDQGICVDAVFFNTLMC 449

Query: 337 AIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLD-QISRCTNP 395
            + ++  +     ++ +M +  ++P   +  TL         +D A  LLD  +S    P
Sbjct: 450 NLCNEGRVMEAQRLIDLMIRVGVRPNVISYNTLVAGHCLTGRIDEAAKLLDVMVSNGLKP 509

Query: 396 KPFS--AFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYE-LLFSLFGNVNAPYEEGNM 451
             F+    L       + + A  +F +M  K + P + TY  +L  LF            
Sbjct: 510 NEFTYTILLRGYCKARRVDDAYSLFREMLMKGVTPVVATYNTILHGLF------------ 557

Query: 452 FSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYF---CDSKTPLG 508
             Q       N + ++M  +  +    +   +L  L     + E  + F   C     L 
Sbjct: 558 --QTGRFSEANELYLNMINSRTKCDIYTYNIILNGLCKNNFVDEAFKMFRRLCSKDPQLD 615

Query: 509 TPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVS 568
           + T+N ++ +L++      AM++F  +   G+ P+  TY ++ +             L S
Sbjct: 616 SVTFNIMIGALLKGGRKEDAMDLFATISAYGLVPDVVTYRLIAENLIEEGSLGEFDGLFS 675

Query: 569 MMVRDGFYPQTMTYTALIKILLDYGDFDEA 598
            M + G  P +    AL++ LL  GD   A
Sbjct: 676 AMEKSGTAPNSHMLNALVRRLLHRGDISRA 705



 Score = 59.7 bits (143), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 48/213 (22%), Positives = 85/213 (39%), Gaps = 42/213 (19%)

Query: 506 PLGTPTYNTVLHSLVEA---QESHRAMEIFKQM-KTCG--IPPNAATYNIMIDC------ 553
           P     +N +L  +  A     S R + +F +M + C   + PNA TY+I+I C      
Sbjct: 46  PASVRAFNQLLTVVSRAGCSSASERVVSLFTRMARECSSKVAPNACTYSILIGCFCRMGR 105

Query: 554 ------------------------------CSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
                                         C   R  ++   L+  M   G  P  + Y 
Sbjct: 106 LEHGFAAFGLILKTGWRVNVIVISQLLKGLCDAKRVDEATDILLLRMSEFGCPPDVVAYN 165

Query: 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
            +I      G  ++A NL   +  +GIP +V+ Y T++   C+   +D  + + +QM   
Sbjct: 166 TVINGFFREGQVEKAYNLFLEMMDQGIPPNVVTYTTVIDGLCKAQVVDRAKGVFQQMIDR 225

Query: 644 KVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
            V+PD  T + +  GY++ G     ++ L+ +S
Sbjct: 226 GVKPDNGTYNCLIHGYLSTGKWKEVVQMLEEMS 258


>gi|356577033|ref|XP_003556634.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Glycine max]
          Length = 757

 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 87/351 (24%), Positives = 148/351 (42%), Gaps = 49/351 (13%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           AE++   M   G+ P+ +TY+  IR +VS   L  G+  ++ M++  + P   T  TL  
Sbjct: 191 AERVFRDMVRNGVSPNVYTYNVIIRGVVSQGDLEKGLGFMRKMEKEGISPNVVTYNTLID 250

Query: 372 ECSKALELDLAEALLDQIS---RCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRP 427
              K  ++  A ALL  ++      N   +++ +       +     ++  +MR K L P
Sbjct: 251 ASCKKKKVKEAMALLRAMAVGGVAANLISYNSVINGLCGKGRMSEVGELVEEMRGKGLVP 310

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL 487
           D  TY  L      VN   +EGN+   +                           LL  +
Sbjct: 311 DEVTYNTL------VNGFCKEGNLHQGLV--------------------------LLSEM 338

Query: 488 GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATY 547
             +G+   ++             TY T+++ + +A    RA+EIF QM+  G+ PN  TY
Sbjct: 339 VGKGLSPNVV-------------TYTTLINCMCKAGNLSRAVEIFDQMRVRGLRPNERTY 385

Query: 548 NIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSL 607
             +ID          A  ++S M+  GF P  +TY AL+      G   EA+ +L  +  
Sbjct: 386 TTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVTYNALVHGYCFLGRVQEAVGILRGMVE 445

Query: 608 EGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
            G+P DV+ Y+T++   C +  +     + E+M +  V PD  T   +  G
Sbjct: 446 RGLPPDVVSYSTVIAGFCRERELGKAFQMKEEMVEKGVLPDTVTYSSLIQG 496



 Score = 89.0 bits (219), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 115/536 (21%), Positives = 215/536 (40%), Gaps = 89/536 (16%)

Query: 127 LMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVH-----ANLCL 181
           L++++L + G++ +A  L++ L  R+G  P +  YN+ L A  +  S  H     A    
Sbjct: 137 LVVKSLSRLGFVPKALTLLH-LANRHGFAPTVLSYNAVLDALLRRSSSNHRDYDDAERVF 195

Query: 182 DLMDSRMVGKNEVTYTELLKLAVWQ----KNLSAVHEIWEDYIKHYSLSIFSLRKFVWSF 237
             M    V  N  TY  +++  V Q    K L  + ++ ++ I   S ++ +    + + 
Sbjct: 196 RDMVRNGVSPNVYTYNVIIRGVVSQGDLEKGLGFMRKMEKEGI---SPNVVTYNTLIDAS 252

Query: 238 TRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFS 297
            + + +K A   L+ M    +   L                                S++
Sbjct: 253 CKKKKVKEAMALLRAMAVGGVAANL-------------------------------ISYN 281

Query: 298 DVIHA-CGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQ 356
            VI+  CG+ + S + E L+ +M+  GL P   TY+  +     +  L  G+ +L  M  
Sbjct: 282 SVINGLCGKGRMSEVGE-LVEEMRGKGLVPDEVTYNTLVNGFCKEGNLHQGLVLLSEMVG 340

Query: 357 NNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIK 416
             L P   T  TL     KA  L                                 RA++
Sbjct: 341 KGLSPNVVTYTTLINCMCKAGNLS--------------------------------RAVE 368

Query: 417 IFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQH 475
           IF +MR + LRP+ RTY  L   F       E   + S++  +    ++   +  N + H
Sbjct: 369 IFDQMRVRGLRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSV---VTYNALVH 425

Query: 476 SHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQM 535
            +  +  + +A+G       +++   +   P    +Y+TV+      +E  +A ++ ++M
Sbjct: 426 GYCFLGRVQEAVG-------ILRGMVERGLPPDVVSYSTVIAGFCRERELGKAFQMKEEM 478

Query: 536 KTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDF 595
              G+ P+  TY+ +I    + +    A  L   M+R G  P  +TYT+LI      G+ 
Sbjct: 479 VEKGVLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRGLPPDEVTYTSLINAYCVDGEL 538

Query: 596 DEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
            +AL L D +   G   D + Y+ ++    +K R  V + ++ ++   +  PD  T
Sbjct: 539 SKALRLHDEMVQRGFLPDNVTYSVLINGLNKKARTKVAKRLLLKLFYEESVPDDVT 594



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 77/158 (48%), Gaps = 5/158 (3%)

Query: 511 TYNTVLHSLVEAQES-HR----AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASA 565
           +YN VL +L+    S HR    A  +F+ M   G+ PN  TYN++I         +    
Sbjct: 169 SYNAVLDALLRRSSSNHRDYDDAERVFRDMVRNGVSPNVYTYNVIIRGVVSQGDLEKGLG 228

Query: 566 LVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKAC 625
            +  M ++G  P  +TY  LI          EA+ LL  +++ G+  +++ YN+++   C
Sbjct: 229 FMRKMEKEGISPNVVTYNTLIDASCKKKKVKEAMALLRAMAVGGVAANLISYNSVINGLC 288

Query: 626 EKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
            KGR+  +  ++E+M    + PD  T + + +G+   G
Sbjct: 289 GKGRMSEVGELVEEMRGKGLVPDEVTYNTLVNGFCKEG 326



 Score = 72.8 bits (177), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 58/253 (22%), Positives = 106/253 (41%), Gaps = 19/253 (7%)

Query: 412 ERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           E+ +    KM ++ + P++ TY  L              +   +    K   A+   MA 
Sbjct: 224 EKGLGFMRKMEKEGISPNVVTYNTLI-------------DASCKKKKVKEAMALLRAMAV 270

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHR 527
             +  + IS  +++  L  +G + E+ +   + +     P   TYNT+++   +    H+
Sbjct: 271 GGVAANLISYNSVINGLCGKGRMSEVGELVEEMRGKGLVPDEVTYNTLVNGFCKEGNLHQ 330

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDC-CSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
            + +  +M   G+ PN  TY  +I+C C      ++      M VR G  P   TYT LI
Sbjct: 331 GLVLLSEMVGKGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVR-GLRPNERTYTTLI 389

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
                 G  +EA  +L  + + G    V+ YN ++   C  GR+     I+  M +  + 
Sbjct: 390 DGFCQKGLMNEAYKVLSEMIVSGFSPSVVTYNALVHGYCFLGRVQEAVGILRGMVERGLP 449

Query: 647 PDPSTCHFVFSGY 659
           PD  +   V +G+
Sbjct: 450 PDVVSYSTVIAGF 462



 Score = 70.5 bits (171), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 59/275 (21%), Positives = 117/275 (42%), Gaps = 17/275 (6%)

Query: 414 AIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNN 472
           A ++F  M R  + P++ TY ++               + SQ D  K +  +   M +  
Sbjct: 191 AERVFRDMVRNGVSPNVYTYNVIIR------------GVVSQGDLEKGLGFMR-KMEKEG 237

Query: 473 IQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAM 529
           I  + ++   L+ A   +  ++E   L++            +YN+V++ L          
Sbjct: 238 ISPNVVTYNTLIDASCKKKKVKEAMALLRAMAVGGVAANLISYNSVINGLCGKGRMSEVG 297

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
           E+ ++M+  G+ P+  TYN +++             L+S MV  G  P  +TYT LI  +
Sbjct: 298 ELVEEMRGKGLVPDEVTYNTLVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCM 357

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649
              G+   A+ + D + + G+  +   Y T++   C+KG ++    ++ +M  +   P  
Sbjct: 358 CKAGNLSRAVEIFDQMRVRGLRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSV 417

Query: 650 STCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEV 684
            T + +  GY   G    A+  L+ +  R L  +V
Sbjct: 418 VTYNALVHGYCFLGRVQEAVGILRGMVERGLPPDV 452



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 122/562 (21%), Positives = 209/562 (37%), Gaps = 97/562 (17%)

Query: 107 METWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLG 166
           M   R M    +  N   Y  ++  LC  G + E   L+  +  + G+ P    YN+ + 
Sbjct: 262 MALLRAMAVGGVAANLISYNSVINGLCGKGRMSEVGELVEEMRGK-GLVPDEVTYNTLVN 320

Query: 167 ACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLS 226
              K  ++    + L  M  + +  N VTYT L+       NLS   EI++       + 
Sbjct: 321 GFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQ------MR 374

Query: 227 IFSLRKFVWSFTRLRD-------LKSAYETLQHMVALA-----------MMGKLYINRTS 268
           +  LR    ++T L D       +  AY+ L  M+              + G  ++ R  
Sbjct: 375 VRGLRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVTYNALVHGYCFLGRVQ 434

Query: 269 E--GRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQP 326
           E  G LR   ++  +P + +        S+S VI    R +  G A Q+  +M   G+ P
Sbjct: 435 EAVGILR-GMVERGLPPDVV--------SYSTVIAGFCRERELGKAFQMKEEMVEKGVLP 485

Query: 327 SSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALL 386
            + TY   I+ +   + L    ++ + M +  L P + T  +L        EL  A  L 
Sbjct: 486 DTVTYSSLIQGLCLQQKLVEAFDLFREMMRRGLPPDEVTYTSLINAYCVDGELSKALRLH 545

Query: 387 DQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPY 446
           D++ +         FL      D    ++ I   + +K R  +    LL  LF      Y
Sbjct: 546 DEMVQ-------RGFLP-----DNVTYSVLING-LNKKARTKV-AKRLLLKLF------Y 585

Query: 447 EEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTP 506
           EE      V      N +  + + N  +    S++ L+K    +G++ E           
Sbjct: 586 EE-----SVPDDVTYNTLIENCSNNEFK----SVEGLVKGFCMKGLMNE----------- 625

Query: 507 LGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASAL 566
                                A  +FK M      PNAA YN+MI   S       A  L
Sbjct: 626 ---------------------ADRVFKTMLQRNHKPNAAIYNLMIHGHSRGGNVHKAYNL 664

Query: 567 VSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE 626
              +    F   T+   AL+K L   G  DE   LL  +      +D  +   +++   +
Sbjct: 665 YMELEHSSFACHTVAVIALVKALAREGMNDELSRLLQNILRSCRLNDAKVAKVLVEVNFK 724

Query: 627 KGRIDVIEFIIEQMHQNKVQPD 648
           +G +D +  ++ +M ++ + PD
Sbjct: 725 EGNMDAVLNVLTEMAKDGLLPD 746



 Score = 43.9 bits (102), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 26/120 (21%), Positives = 58/120 (48%), Gaps = 6/120 (5%)

Query: 538 CGIP-PNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL-----D 591
           C  P  ++A +++++   S +     A  L+ +  R GF P  ++Y A++  LL     +
Sbjct: 125 CSSPFSSSAVFDLVVKSLSRLGFVPKALTLLHLANRHGFAPTVLSYNAVLDALLRRSSSN 184

Query: 592 YGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
           + D+D+A  +   +   G+  +V  YN I++    +G ++     + +M +  + P+  T
Sbjct: 185 HRDYDDAERVFRDMVRNGVSPNVYTYNVIIRGVVSQGDLEKGLGFMRKMEKEGISPNVVT 244


>gi|15242446|ref|NP_198787.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170916|sp|Q9FIX3.1|PP407_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g39710; AltName: Full=Protein EMBRYO DEFECTIVE 2745
 gi|10177971|dbj|BAB11377.1| unnamed protein product [Arabidopsis thaliana]
 gi|332007083|gb|AED94466.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 747

 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 83/348 (23%), Positives = 151/348 (43%), Gaps = 21/348 (6%)

Query: 320 QSLGLQPSSHTYDGFIRAIV-SDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALE 378
           Q+ G  P   +Y+  + A + S R +     V K M ++ + P   T   L      A  
Sbjct: 161 QAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGN 220

Query: 379 LDLAEALLDQISR---CTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYEL 434
           +D+A  L D++       N   ++  +     + K +   K+   M  K L P++ +Y +
Sbjct: 221 IDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNV 280

Query: 435 LFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIR 494
           +      +N    EG M       K ++ +  +M R       ++   L+K    EG   
Sbjct: 281 V------INGLCREGRM-------KEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFH 327

Query: 495 ELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI 551
           + +    +      TP   TY +++HS+ +A   +RAME   QM+  G+ PN  TY  ++
Sbjct: 328 QALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLV 387

Query: 552 DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIP 611
           D  S       A  ++  M  +GF P  +TY ALI      G  ++A+ +L+ +  +G+ 
Sbjct: 388 DGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLS 447

Query: 612 HDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
            DV+ Y+T+L   C    +D    +  +M +  ++PD  T   +  G+
Sbjct: 448 PDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGF 495



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 118/566 (20%), Positives = 229/566 (40%), Gaps = 79/566 (13%)

Query: 127 LMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGAC--AKLHSMVHANLCLDLM 184
           L++++  +   +++A ++++ L + +G  P +  YN+ L A   +K +     N+  +++
Sbjct: 139 LVVKSYSRLSLIDKALSIVH-LAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEML 197

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSL-SIFSLRKFVWSFTRLRDL 243
           +S+ V  N  TY  L++   +  N+     +++       L ++ +    +  + +LR +
Sbjct: 198 ESQ-VSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKI 256

Query: 244 KSAYETLQHMVALAMMGKLY-INRTSEGRLRSSRL-DIPIPLNALPVMKVLRWSFSDVIH 301
              ++ L+ M    +   L   N    G  R  R+ ++   L     M    +S  +V +
Sbjct: 257 DDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTE---MNRRGYSLDEVTY 313

Query: 302 AC---GRTQNSGLAEQLMLQMQSL--GLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQ 356
                G  +     + L++  + L  GL PS  TY   I ++     +   ME L  M+ 
Sbjct: 314 NTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRV 373

Query: 357 NNLKPQDSTIATLSVECSKALELDLAEALLDQIS-RCTNPK--PFSAFLAACDTMDKPER 413
             L P + T  TL    S+   ++ A  +L +++    +P    ++A +       K E 
Sbjct: 374 RGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMED 433

Query: 414 AIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNN 472
           AI +   M++K L PD+ +Y  + S F      Y+       VD A R+           
Sbjct: 434 AIAVLEDMKEKGLSPDVVSYSTVLSGFCR---SYD-------VDEALRVK---------- 473

Query: 473 IQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIF 532
                                RE+++          T TY++++    E + +  A +++
Sbjct: 474 ---------------------REMVE----KGIKPDTITYSSLIQGFCEQRRTKEACDLY 508

Query: 533 KQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDY 592
           ++M   G+PP+  TY  +I+   +    + A  L + MV  G  P  +TY+ LI  L   
Sbjct: 509 EEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQ 568

Query: 593 GDFDEALNLL-DLVSLEGIPHDVLLYNTI--------------LKKACEKGRIDVIEFII 637
               EA  LL  L   E +P DV  +  I              +K  C KG +   + + 
Sbjct: 569 SRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVF 628

Query: 638 EQMHQNKVQPDPSTCHFVFSGYVNCG 663
           E M     +PD +  + +  G+   G
Sbjct: 629 ESMLGKNHKPDGTAYNIMIHGHCRAG 654



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 107/475 (22%), Positives = 191/475 (40%), Gaps = 40/475 (8%)

Query: 226 SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMM-GKLYINRTSEGRLRSSRLDIPIPLN 284
           S+F L   V S++RL  +  A   +    A   M G L  N   +  +RS R +I    N
Sbjct: 135 SVFDL--VVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKR-NISFAEN 191

Query: 285 ALPVMKVLR-----WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIV 339
               M   +     ++++ +I       N  +A  L  +M++ G  P+  TY+  I    
Sbjct: 192 VFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYC 251

Query: 340 SDRGLRNGMEVLKIMQQNNLKPQ----DSTIATLSVECSKALELDLAEALLDQISRCTNP 395
             R + +G ++L+ M    L+P     +  I  L  E  +  E+      +++     + 
Sbjct: 252 KLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCRE-GRMKEVSFVLTEMNRRGYSLDE 310

Query: 396 KPFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTY-ELLFSL--FGNVN-------- 443
             ++  +          +A+ + A+M R  L P + TY  L+ S+   GN+N        
Sbjct: 311 VTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQ 370

Query: 444 ------APYEEG-----NMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGM 492
                  P E       + FSQ         +  +M  N    S ++   L+      G 
Sbjct: 371 MRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGK 430

Query: 493 IRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNI 549
           + + I    D K    +P   +Y+TVL     + +   A+ + ++M   GI P+  TY+ 
Sbjct: 431 MEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSS 490

Query: 550 MIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEG 609
           +I      R  K A  L   M+R G  P   TYTALI      GD ++AL L + +  +G
Sbjct: 491 LIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKG 550

Query: 610 IPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGF 664
           +  DV+ Y+ ++    ++ R    + ++ ++   +  P   T H +     N  F
Sbjct: 551 VLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEF 605



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 85/193 (44%), Gaps = 4/193 (2%)

Query: 489 AEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYN 548
           AE + +E+++    S+      TYN ++     A     A+ +F +M+T G  PN  TYN
Sbjct: 189 AENVFKEMLE----SQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYN 244

Query: 549 IMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLE 608
            +ID    +R       L+  M   G  P  ++Y  +I  L   G   E   +L  ++  
Sbjct: 245 TLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRR 304

Query: 609 GIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSA 668
           G   D + YNT++K  C++G       +  +M ++ + P   T   +       G  N A
Sbjct: 305 GYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRA 364

Query: 669 MEALQVLSMRMLC 681
           ME L  + +R LC
Sbjct: 365 MEFLDQMRVRGLC 377



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 62/309 (20%), Positives = 131/309 (42%), Gaps = 33/309 (10%)

Query: 400 AFLAACDTMDKPERAI----KIFAKM-RQKLRPDIRTYELL---FSLFGNVNAPYEEGNM 451
           ++ A  D   + +R I     +F +M   ++ P++ TY +L   F   GN++       +
Sbjct: 171 SYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVAL---TL 227

Query: 452 FSQVDSAKRINAIEMDMARNNIQHSHISMKN------LLKALGAEGMIRELIQYFCDSKT 505
           F ++++   +  +   +  N +   +  ++       LL+++  +G+   LI        
Sbjct: 228 FDKMETKGCLPNV---VTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLI-------- 276

Query: 506 PLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASA 565
                +YN V++ L           +  +M   G   +  TYN +I        F  A  
Sbjct: 277 -----SYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALV 331

Query: 566 LVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKAC 625
           + + M+R G  P  +TYT+LI  +   G+ + A+  LD + + G+  +   Y T++    
Sbjct: 332 MHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFS 391

Query: 626 EKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVS 685
           +KG ++    ++ +M+ N   P   T + + +G+   G    A+  L+ +  + L  +V 
Sbjct: 392 QKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVV 451

Query: 686 TLEEKRSDF 694
           +     S F
Sbjct: 452 SYSTVLSGF 460



 Score = 44.7 bits (104), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 98/522 (18%), Positives = 203/522 (38%), Gaps = 96/522 (18%)

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
           M  +   L+   Y  +++  CK G   +A  +++    R+G+ P +  Y S + +  K  
Sbjct: 301 MNRRGYSLDEVTYNTLIKGYCKEGNFHQAL-VMHAEMLRHGLTPSVITYTSLIHSMCKAG 359

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH-YSLSIFSLR 231
           +M  A   LD M  R +  NE TYT L+     +  ++  + +  +   + +S S+ +  
Sbjct: 360 NMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYN 419

Query: 232 KFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKV 291
             +        ++ A   L+ M                 + +    D+            
Sbjct: 420 ALINGHCVTGKMEDAIAVLEDM-----------------KEKGLSPDV------------ 450

Query: 292 LRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVL 351
              S+S V+    R+ +   A ++  +M   G++P + TY   I+     R  +   ++ 
Sbjct: 451 --VSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLY 508

Query: 352 KIMQQNNLKPQDST-IATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDK 410
           + M +  L P + T  A ++  C   +E DL                             
Sbjct: 509 EEMLRVGLPPDEFTYTALINAYC---MEGDL----------------------------- 536

Query: 411 PERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI-------N 462
            E+A+++  +M +K + PD+ TY +L +            N  S+   AKR+        
Sbjct: 537 -EKALQLHNEMVEKGVLPDVVTYSVLINGL----------NKQSRTREAKRLLLKLFYEE 585

Query: 463 AIEMDMARNNIQH--SHISMK---NLLKALGAEGMIRELIQYF----CDSKTPLGTPTYN 513
           ++  D+  + +    S+I  K   +L+K    +GM+ E  Q F      +  P GT  YN
Sbjct: 586 SVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGT-AYN 644

Query: 514 TVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRD 573
            ++H    A +  +A  ++K+M   G   +  T   ++            ++++  ++R 
Sbjct: 645 IMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHKEGKVNELNSVIVHVLRS 704

Query: 574 GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEG-IPHDV 614
               +      L++I    G+ D  L++L  ++ +G +P+ +
Sbjct: 705 CELSEAEQAKVLVEINHREGNMDVVLDVLAEMAKDGFLPNGI 746


>gi|242084804|ref|XP_002442827.1| hypothetical protein SORBIDRAFT_08g003450 [Sorghum bicolor]
 gi|241943520|gb|EES16665.1| hypothetical protein SORBIDRAFT_08g003450 [Sorghum bicolor]
          Length = 899

 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 121/591 (20%), Positives = 244/591 (41%), Gaps = 38/591 (6%)

Query: 90  FFHILN-YCA--RSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIY 146
           F +I+N YC   R  D L V  +   M      L+ + Y +++  L K    +EA   + 
Sbjct: 302 FTNIINGYCKAERIDDALRVKTS---MLSSNCKLDLQAYGVLINVLIKKCRFKEAKETVS 358

Query: 147 FLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAV-- 204
            +    G+ P + +Y S +    K+  +  A     LM+      N  TY+ L+   +  
Sbjct: 359 EMFAN-GLAPNVVIYTSIIDGYCKVGKVGAALEVFRLMEHEGCRPNAWTYSSLIYGLIQD 417

Query: 205 --WQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMM-GK 261
               K ++ + ++ ED I   +  + +    +    +  +  +A+   + M    +   +
Sbjct: 418 QKLHKAMALITKMQEDGI---TPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDE 474

Query: 262 LYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQS 321
              N  +    +S R +          + + + +++ ++    +  N+  A  L+ +M +
Sbjct: 475 QAYNVLTHALCKSGRAEEAYSFLVRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVN 534

Query: 322 LGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDL 381
            G +  S+TY   ++A+   + L   + +L  M  + +K        +  E  K  + D 
Sbjct: 535 EGCKADSYTYSVLLQALCKQKKLNEALSILDQMTLSGVKCNIVAYTIIISEMIKEGKHDH 594

Query: 382 AEALLDQ-ISRCTNPKP--FSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFS 437
           A+++ ++ IS    P    ++ F+++   + + E A  +  +M R  + PD+ TY +  +
Sbjct: 595 AKSMFNEMISSGHKPSATTYTVFISSYCKIGQIEEAEHLIGEMERDGVAPDVVTYNVFIN 654

Query: 438 LFGNVNAPYEEGNMFSQVDSAKRI--NAIEMDMARNNIQHSHISMKNLLKA--LGAEGM- 492
             G++      G M     + KR+   + E +     I   H    +L+ A  +   GM 
Sbjct: 655 GCGHM------GYMDRAFSTLKRMIDASCEPNYWTYWILLKHFLKMSLVDAHYVDTSGMW 708

Query: 493 -------IRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAA 545
                  + +L++            TY++++    +A     A  +F  M+   I PN  
Sbjct: 709 NWIELDTVWQLLERMVKHGLNPTAVTYSSIIAGFCKATRLEEACVLFDHMRGKDISPNEE 768

Query: 546 TYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL-DL 604
            Y ++I CC  I+ F  A + V+ M+  GF P   +Y  LI  L D GD+D+A +L  DL
Sbjct: 769 IYTMLIKCCCDIKLFGKAVSFVTDMIEFGFQPHLESYHYLIVGLCDEGDYDKAKSLFCDL 828

Query: 605 VSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFV 655
           + +E   H+ + +  +     + G +D    ++  M     Q D  T   V
Sbjct: 829 LGMEDYNHNEVAWKILNDGLLKAGHVDFCSQLLSAMENRHCQIDSETYSMV 879



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 109/578 (18%), Positives = 217/578 (37%), Gaps = 83/578 (14%)

Query: 97  CARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYP 156
           C R    L VM     M +    LN   Y L+++ LCK G +  A  ++  +  R G+ P
Sbjct: 175 CVREALVLLVM-----MVQDGCSLNLHTYTLLIKGLCKEGRIHGARRVLEEMPLR-GVVP 228

Query: 157 ILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIW 216
            +  YN+ +    K   M  A     LM+      ++ TY  L+     +K   A   + 
Sbjct: 229 SVWTYNAMIDGYCKSGRMKDALGIKALMERNGCNPDDWTYNILIYGLCGEKPDEAEELLN 288

Query: 217 EDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSR 276
           +  ++ ++ ++ +    +  + +   +  A      M++                  + +
Sbjct: 289 DAIVRGFTPTVITFTNIINGYCKAERIDDALRVKTSMLS-----------------SNCK 331

Query: 277 LDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIR 336
           LD    L A  V+       + +I  C   +    A++ + +M + GL P+   Y   I 
Sbjct: 332 LD----LQAYGVL------INVLIKKCRFKE----AKETVSEMFANGLAPNVVIYTSIID 377

Query: 337 AIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPK 396
                  +   +EV ++M+    +P   T ++L           +   + DQ        
Sbjct: 378 GYCKVGKVGAALEVFRLMEHEGCRPNAWTYSSL-----------IYGLIQDQ-------- 418

Query: 397 PFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQV 455
                        K  +A+ +  KM++  + P + TY  L    G             + 
Sbjct: 419 -------------KLHKAMALITKMQEDGITPGVITYTTLIQ--GQCKK--------HEF 455

Query: 456 DSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTV 515
           D+A R+   EM M +N +     +   L  AL   G   E   +       L   TY ++
Sbjct: 456 DNAFRL--FEM-MEQNGLTPDEQAYNVLTHALCKSGRAEEAYSFLVRKGVVLTKVTYTSL 512

Query: 516 LHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGF 575
           +    +A  +  A  + ++M   G   ++ TY++++      +    A +++  M   G 
Sbjct: 513 VDGFSKAGNTDFAAVLIEKMVNEGCKADSYTYSVLLQALCKQKKLNEALSILDQMTLSGV 572

Query: 576 YPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEF 635
               + YT +I  ++  G  D A ++ + +   G       Y   +   C+ G+I+  E 
Sbjct: 573 KCNIVAYTIIISEMIKEGKHDHAKSMFNEMISSGHKPSATTYTVFISSYCKIGQIEEAEH 632

Query: 636 IIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           +I +M ++ V PD  T +   +G  + G+ + A   L+
Sbjct: 633 LIGEMERDGVAPDVVTYNVFINGCGHMGYMDRAFSTLK 670



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 85/370 (22%), Positives = 152/370 (41%), Gaps = 29/370 (7%)

Query: 285 ALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGL 344
           A+  ++ +R    D+  AC           L++ M  +G + + ++Y   I+ +   R +
Sbjct: 127 AVDAIQAIRRVGGDLRKAC----------WLLMMMPLMGCRRNEYSYTILIQGLCETRCV 176

Query: 345 RNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQIS-RCTNPKPFSAFLA 403
           R  + +L +M Q+       T   L     K   +  A  +L+++  R   P  ++ + A
Sbjct: 177 REALVLLVMMVQDGCSLNLHTYTLLIKGLCKEGRIHGARRVLEEMPLRGVVPSVWT-YNA 235

Query: 404 ACDTMDKPER---AIKIFAKM-RQKLRPDIRTYELL-FSLFGNVNAPYEEGNMFSQVDSA 458
             D   K  R   A+ I A M R    PD  TY +L + L G    P E   + +     
Sbjct: 236 MIDGYCKSGRMKDALGIKALMERNGCNPDDWTYNILIYGLCGE--KPDEAEELLN----- 288

Query: 459 KRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHS 518
              +AI        I  ++I +    KA   +  +R +      S   L    Y  +++ 
Sbjct: 289 ---DAIVRGFTPTVITFTNI-INGYCKAERIDDALR-VKTSMLSSNCKLDLQAYGVLINV 343

Query: 519 LVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQ 578
           L++      A E   +M   G+ PN   Y  +ID    +    +A  +  +M  +G  P 
Sbjct: 344 LIKKCRFKEAKETVSEMFANGLAPNVVIYTSIIDGYCKVGKVGAALEVFRLMEHEGCRPN 403

Query: 579 TMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIE 638
             TY++LI  L+      +A+ L+  +  +GI   V+ Y T+++  C+K   D    + E
Sbjct: 404 AWTYSSLIYGLIQDQKLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFE 463

Query: 639 QMHQNKVQPD 648
            M QN + PD
Sbjct: 464 MMEQNGLTPD 473



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 61/137 (44%), Gaps = 2/137 (1%)

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
           +A  +   M   G   N  +Y I+I      RC + A  L+ MMV+DG      TYT LI
Sbjct: 143 KACWLLMMMPLMGCRRNEYSYTILIQGLCETRCVREALVLLVMMVQDGCSLNLHTYTLLI 202

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
           K L   G    A  +L+ + L G+   V  YN ++   C+ GR+     I   M +N   
Sbjct: 203 KGLCKEGRIHGARRVLEEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKALMERNGCN 262

Query: 647 PDPSTCHFVFSGYVNCG 663
           PD  T + +  G   CG
Sbjct: 263 PDDWTYNILIYGL--CG 277



 Score = 46.2 bits (108), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 44/196 (22%), Positives = 81/196 (41%), Gaps = 4/196 (2%)

Query: 483 LLKALGAEGMI---RELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCG 539
           L+K L  EG I   R +++            TYN ++    ++     A+ I   M+  G
Sbjct: 201 LIKGLCKEGRIHGARRVLEEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKALMERNG 260

Query: 540 IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEAL 599
             P+  TYNI+I      +  ++   L   +VR GF P  +T+T +I         D+AL
Sbjct: 261 CNPDDWTYNILIYGLCGEKPDEAEELLNDAIVR-GFTPTVITFTNIINGYCKAERIDDAL 319

Query: 600 NLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
            +   +       D+  Y  ++    +K R    +  + +M  N + P+      +  GY
Sbjct: 320 RVKTSMLSSNCKLDLQAYGVLINVLIKKCRFKEAKETVSEMFANGLAPNVVIYTSIIDGY 379

Query: 660 VNCGFHNSAMEALQVL 675
              G   +A+E  +++
Sbjct: 380 CKVGKVGAALEVFRLM 395



 Score = 42.0 bits (97), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 1/122 (0%)

Query: 560 FKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNT 619
            + A  L+ MM   G      +YT LI+ L +     EAL LL ++  +G   ++  Y  
Sbjct: 141 LRKACWLLMMMPLMGCRRNEYSYTILIQGLCETRCVREALVLLVMMVQDGCSLNLHTYTL 200

Query: 620 ILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRM 679
           ++K  C++GRI     ++E+M    V P   T + +  GY   G    A+  ++ L  R 
Sbjct: 201 LIKGLCKEGRIHGARRVLEEMPLRGVVPSVWTYNAMIDGYCKSGRMKDAL-GIKALMERN 259

Query: 680 LC 681
            C
Sbjct: 260 GC 261


>gi|255548407|ref|XP_002515260.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545740|gb|EEF47244.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 878

 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 130/303 (42%), Gaps = 19/303 (6%)

Query: 378 ELDLAEALLDQISRCTNPK---PFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYE 433
           +++LA+A+ D   +    K    FSA ++A         AIK+F  M+   L P++ TY 
Sbjct: 205 KVELAKAVFDTALKEGYGKTVYAFSALISAYGRSGYCNEAIKVFDSMKSNGLMPNLVTYN 264

Query: 434 LLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGM- 492
            +    G     +            K++  I   M  N +Q   I+  +LL      G+ 
Sbjct: 265 AVIDACGKGGVEF------------KKVVEIFDGMLSNGVQPDRITFNSLLAVCSRGGLW 312

Query: 493 --IRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIM 550
              R L     D        TYNT+L ++ +  +   A EI  +M T  I PN  TY+ M
Sbjct: 313 EAARRLFSAMVDKGIDQDIFTYNTLLDAVCKGGQMDLAFEIMSEMPTKNILPNVVTYSTM 372

Query: 551 IDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGI 610
           ID  + +     A  + + M   G     ++Y  L+ +    G F++AL++   +   GI
Sbjct: 373 IDGYAKVGRLDDALNMFNEMKFLGVGLDRVSYNTLLSVYAKLGRFEQALDVCKEMENAGI 432

Query: 611 PHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAME 670
             DV+ YN +L    ++ R D +  + E+M + +V P+  T   +   Y   G +  AME
Sbjct: 433 RKDVVTYNALLAGYGKQYRYDEVRRVFEEMKRGRVSPNLLTYSTLIDVYSKGGLYKEAME 492

Query: 671 ALQ 673
             +
Sbjct: 493 VFR 495



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 95/416 (22%), Positives = 177/416 (42%), Gaps = 61/416 (14%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRG---LRNGMEV 350
           ++FS +I A GR+     A ++   M+S GL P+  TY+  I A    +G    +  +E+
Sbjct: 226 YAFSALISAYGRSGYCNEAIKVFDSMKSNGLMPNLVTYNAVIDAC--GKGGVEFKKVVEI 283

Query: 351 LKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDK 410
              M  N ++P                         D+I+       F++ LA C     
Sbjct: 284 FDGMLSNGVQP-------------------------DRIT-------FNSLLAVCSRGGL 311

Query: 411 PERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
            E A ++F+ M  K +  DI TY  L      ++A  + G    Q+D A  I +   +M 
Sbjct: 312 WEAARRLFSAMVDKGIDQDIFTYNTL------LDAVCKGG----QMDLAFEIMS---EMP 358

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSK---TPLGTPTYNTVLHSLVEAQESH 526
             NI  + ++   ++      G + + +  F + K     L   +YNT+L    +     
Sbjct: 359 TKNILPNVVTYSTMIDGYAKVGRLDDALNMFNEMKFLGVGLDRVSYNTLLSVYAKLGRFE 418

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
           +A+++ K+M+  GI  +  TYN ++        +     +   M R    P  +TY+ LI
Sbjct: 419 QALDVCKEMENAGIRKDVVTYNALLAGYGKQYRYDEVRRVFEEMKRGRVSPNLLTYSTLI 478

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
            +    G + EA+ +       G+  DV+LY+ ++   C+ G ++    ++++M +  ++
Sbjct: 479 DVYSKGGLYKEAMEVFREFKQAGLKADVVLYSALIDALCKNGLVESSVTLLDEMTKEGIR 538

Query: 647 PDPSTCH-----FVFSGYVNCGFHNSA-MEALQVLSMRMLCEEVSTLEEKRSDFED 696
           P+  T +     F  S    C   +S    ALQV S+  +  +   +E + +D ED
Sbjct: 539 PNVVTYNSIIDAFGRSASAQCVVDDSGETTALQVESLSSIVVQ-EAIESQAADKED 593



 Score = 60.1 bits (144), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 78/390 (20%), Positives = 159/390 (40%), Gaps = 39/390 (10%)

Query: 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
           R +F+ ++  C R      A +L   M   G+     TY+  + A+     +    E++ 
Sbjct: 296 RITFNSLLAVCSRGGLWEAARRLFSAMVDKGIDQDIFTYNTLLDAVCKGGQMDLAFEIMS 355

Query: 353 IMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ---ISRCTNPKPFSAFLAACDTMD 409
            M   N+ P   T +T+    +K   LD A  + ++   +    +   ++  L+    + 
Sbjct: 356 EMPTKNILPNVVTYSTMIDGYAKVGRLDDALNMFNEMKFLGVGLDRVSYNTLLSVYAKLG 415

Query: 410 KPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
           + E+A+ +  +M    +R D+ TY  L + +G     Y+E            +  +  +M
Sbjct: 416 RFEQALDVCKEMENAGIRKDVVTYNALLAGYGK-QYRYDE------------VRRVFEEM 462

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTP---LGTPTYNTVLHSLVEAQES 525
            R  +  + ++   L+      G+ +E ++ F + K          Y+ ++ +L +    
Sbjct: 463 KRGRVSPNLLTYSTLIDVYSKGGLYKEAMEVFREFKQAGLKADVVLYSALIDALCKNGLV 522

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
             ++ +  +M   GI PN  TYN +ID        +SASA    +V D      +   +L
Sbjct: 523 ESSVTLLDEMTKEGIRPNVVTYNSIIDAFG-----RSASA--QCVVDDSGETTALQVESL 575

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE-----KGRIDVIEFIIEQM 640
             I++      +A +  D   +E      +      +KACE     K  I  I  + ++M
Sbjct: 576 SSIVVQEAIESQAADKEDNRIIE------IFGKLAAEKACEAKNSGKQEILCILGVFQKM 629

Query: 641 HQNKVQPDPSTCHFVFSGYVNC-GFHNSAM 669
           H+ K++P+  T   + +    C  F +++M
Sbjct: 630 HELKIKPNVVTFSAILNACSRCDSFEDASM 659



 Score = 50.1 bits (118), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 88/454 (19%), Positives = 177/454 (38%), Gaps = 37/454 (8%)

Query: 128 MMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMD-- 185
           ++ A  + GY  EA  +   + +  G+ P L  YN+ + AC K    V     +++ D  
Sbjct: 231 LISAYGRSGYCNEAIKVFDSM-KSNGLMPNLVTYNAVIDACGK--GGVEFKKVVEIFDGM 287

Query: 186 -SRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYSLSIFSLRKFVWSFTRLRDL 243
            S  V  + +T+  LL +        A   ++   + K     IF+    + +  +   +
Sbjct: 288 LSNGVQPDRITFNSLLAVCSRGGLWEAARRLFSAMVDKGIDQDIFTYNTLLDAVCKGGQM 347

Query: 244 KSAYETLQHMVALAMMGKLYINRTS-EGRLRSSRLDIPIPLNALPVMKVL-----RWSFS 297
             A+E +  M    ++  +    T  +G  +  RLD    LN    MK L     R S++
Sbjct: 348 DLAFEIMSEMPTKNILPNVVTYSTMIDGYAKVGRLD--DALNMFNEMKFLGVGLDRVSYN 405

Query: 298 DVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQN 357
            ++    +      A  +  +M++ G++    TY+  +              V + M++ 
Sbjct: 406 TLLSVYAKLGRFEQALDVCKEMENAGIRKDVVTYNALLAGYGKQYRYDEVRRVFEEMKRG 465

Query: 358 NLKPQDSTIATL-SVECSKALELDLAEAL--LDQISRCTNPKPFSAFLAACDTMDKPERA 414
            + P   T +TL  V     L  +  E      Q     +   +SA + A       E +
Sbjct: 466 RVSPNLLTYSTLIDVYSKGGLYKEAMEVFREFKQAGLKADVVLYSALIDALCKNGLVESS 525

Query: 415 IKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNI 473
           + +  +M ++ +RP++ TY  +   FG         +    VD +    A++++      
Sbjct: 526 VTLLDEMTKEGIRPNVVTYNSIIDAFG------RSASAQCVVDDSGETTALQVE------ 573

Query: 474 QHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFK 533
             S I ++  +++  A+     +I+ F            N+        QE    + +F+
Sbjct: 574 SLSSIVVQEAIESQAADKEDNRIIEIFGKLAAEKACEAKNS------GKQEILCILGVFQ 627

Query: 534 QMKTCGIPPNAATYNIMIDCCSIIRCFKSASALV 567
           +M    I PN  T++ +++ CS    F+ AS L+
Sbjct: 628 KMHELKIKPNVVTFSAILNACSRCDSFEDASMLL 661


>gi|359475386|ref|XP_003631674.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Vitis vinifera]
          Length = 762

 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 94/370 (25%), Positives = 154/370 (41%), Gaps = 51/370 (13%)

Query: 295 SFSDVIHACGRTQNSGL--AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
           S++ V+ A  R++ S    AE++  +M    + P+ +TY+  IR   S   L+ G+    
Sbjct: 179 SYNSVLDAIVRSRGSVKLSAEEVYREMIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFG 238

Query: 353 IMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI-SRCTNPK--PFSAFLAACDTMD 409
            M++N   P   T  TL     K   +D A  LL  + S+   P    ++  +       
Sbjct: 239 EMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREG 298

Query: 410 KPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
             + A +I  +M  K   PD  TY  L      +N   +EGN    +        I  +M
Sbjct: 299 SMKEAWEILEEMGYKGFTPDEVTYNTL------LNGYCKEGNFHQAL-------VIHAEM 345

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRA 528
            RN +  S +                                TY  +++S+ +A+  +RA
Sbjct: 346 VRNGVSPSVV--------------------------------TYTALINSMCKARNLNRA 373

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
           ME F QM+  G+ PN  TY  +ID  S       A  +++ M   GF P  +TY A I  
Sbjct: 374 MEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHG 433

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
                  +EAL ++  +  +G+  DV+ Y+TI+   C KG +D    + ++M +  V PD
Sbjct: 434 HCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPD 493

Query: 649 PSTCHFVFSG 658
             T   +  G
Sbjct: 494 AVTYSSLIQG 503



 Score = 89.0 bits (219), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 140/322 (43%), Gaps = 20/322 (6%)

Query: 315 LMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECS 374
           L+  M S G+QP+  +Y+  I  +  +  ++   E+L+ M      P + T  TL     
Sbjct: 271 LLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYC 330

Query: 375 KALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPE---RAIKIFAKMR-QKLRPDIR 430
           K      A  +  ++ R         + A  ++M K     RA++ F +MR + LRP+ R
Sbjct: 331 KEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNER 390

Query: 431 TYELL---FSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL 487
           TY  L   FS  G +N  Y   N  ++   +  +      +  N   H H  ++ + +AL
Sbjct: 391 TYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSV------VTYNAFIHGHCVLERMEEAL 444

Query: 488 GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATY 547
           G       ++Q   +        +Y+T++       E  RA ++ ++M   G+ P+A TY
Sbjct: 445 G-------VVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTY 497

Query: 548 NIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSL 607
           + +I     +R    A  L   M+  G  P   TYT LI      GD ++AL+L D +  
Sbjct: 498 SSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIH 557

Query: 608 EGIPHDVLLYNTILKKACEKGR 629
           +G   D + Y+ ++    ++ R
Sbjct: 558 KGFLPDAVTYSVLINGLNKQAR 579



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 65/262 (24%), Positives = 110/262 (41%), Gaps = 9/262 (3%)

Query: 423 QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQ----VDSAKRINAIEMDMARNNIQHSHI 478
           Q L+     Y    ++F  +   Y   NM  Q    ++ AK    +   ++ N++  + +
Sbjct: 129 QCLKDSYHVYNSSSAVFDLMVKSYSHLNMIDQAVNTINLAKSSGFMPGVLSYNSVLDAIV 188

Query: 479 SMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTC 538
             +  +K L AE + RE+I+    S+      TYN ++       E  + +  F +M+  
Sbjct: 189 RSRGSVK-LSAEEVYREMIR----SRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERN 243

Query: 539 GIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEA 598
           G  PN  TYN +ID    +     A  L+  M   G  P  ++Y  +I  L   G   EA
Sbjct: 244 GCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEA 303

Query: 599 LNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
             +L+ +  +G   D + YNT+L   C++G       I  +M +N V P   T   + + 
Sbjct: 304 WEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINS 363

Query: 659 YVNCGFHNSAMEALQVLSMRML 680
                  N AME    + +R L
Sbjct: 364 MCKARNLNRAMEFFDQMRIRGL 385



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 70/327 (21%), Positives = 132/327 (40%), Gaps = 38/327 (11%)

Query: 385 LLDQISRCTNPKPFSAFLAAC-------DTMDKPERAIKIFAK------MRQKLRPDIRT 431
           ++DQ     N    S F+          D + +   ++K+ A+      +R ++ P++ T
Sbjct: 157 MIDQAVNTINLAKSSGFMPGVLSYNSVLDAIVRSRGSVKLSAEEVYREMIRSRVSPNVYT 216

Query: 432 YELLFSLFGNVNAPYEEGNMFSQ----------------VDSAKRINAIE------MDMA 469
           Y +L   F +V    +    F +                +D+  ++  I+        M+
Sbjct: 217 YNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSMS 276

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESH 526
              +Q + IS   ++  L  EG ++E  +   +      TP   TYNT+L+   +    H
Sbjct: 277 SKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFH 336

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
           +A+ I  +M   G+ P+  TY  +I+     R    A      M   G  P   TYT LI
Sbjct: 337 QALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLI 396

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
                 G  +EA  +L+ ++  G    V+ YN  +   C   R++    ++++M +  + 
Sbjct: 397 DGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLA 456

Query: 647 PDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           PD  +   + SG+   G  + A +  Q
Sbjct: 457 PDVVSYSTIISGFCRKGELDRAFQMKQ 483



 Score = 66.2 bits (160), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 107/497 (21%), Positives = 185/497 (37%), Gaps = 70/497 (14%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y  ++ A CK G ++EA  L+  +  + G+ P L  YN  +    +  SM  A   L+ M
Sbjct: 252 YNTLIDAYCKMGRIDEAFGLLKSMSSK-GMQPNLISYNVIINGLCREGSMKEAWEILEEM 310

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH-YSLSIFSLRKFVWSFTRLRDL 243
             +    +EVTY  LL     + N      I  + +++  S S+ +    + S  + R+L
Sbjct: 311 GYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNL 370

Query: 244 KSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHAC 303
             A E    M                 R+R  R +                +++ +I   
Sbjct: 371 NRAMEFFDQM-----------------RIRGLRPN--------------ERTYTTLIDGF 399

Query: 304 GRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQD 363
            R      A +++ +M   G  PS  TY+ FI        +   + V++ M +  L P  
Sbjct: 400 SRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDV 459

Query: 364 STIATLSVECSKALELDLAEALLDQ-ISRCTNPKP--FSAFLAACDTMDKPERAIKIFAK 420
            + +T+     +  ELD A  +  + + +  +P    +S+ +     M +   A  +  +
Sbjct: 460 VSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQE 519

Query: 421 M-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHIS 479
           M    L PD  TY  L      +NA   EG++   +        +  +M         ++
Sbjct: 520 MLDMGLPPDEFTYTTL------INAYCVEGDLNKALH-------LHDEMIHKGFLPDAVT 566

Query: 480 MKNLLKALGAEGMIRE----LIQYFCDSKTPLGTPTYNTVLH--SLVEAQES-------- 525
              L+  L  +   RE    L +   +   P    TY+T++   S +E +          
Sbjct: 567 YSVLINGLNKQARTREAKRLLFKLIYEESVP-SDVTYDTLIENCSNIEFKSVVALIKGFC 625

Query: 526 -----HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTM 580
                H A  +F+ M      P  A YN++I           A  L   M+  GF P T+
Sbjct: 626 MKGLMHEADRVFESMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTV 685

Query: 581 TYTALIKILLDYGDFDE 597
           T   LIK L   G  +E
Sbjct: 686 TVITLIKALFKEGMNEE 702



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 118/566 (20%), Positives = 208/566 (36%), Gaps = 74/566 (13%)

Query: 54  ATQMQIVDALCR-GERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRM 112
            T   ++DA C+ G    A  LL ++           +  I+N   R      + E W +
Sbjct: 250 VTYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGS---MKEAWEI 306

Query: 113 MEE---KEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACA 169
           +EE   K    +   Y  ++   CK G   +A  +I+    R G+ P +  Y + + +  
Sbjct: 307 LEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQAL-VIHAEMVRNGVSPSVVTYTALINSMC 365

Query: 170 KLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH-YSLSIF 228
           K  ++  A    D M  R +  NE TYT L+     Q  L+  + I  +  +  +S S+ 
Sbjct: 366 KARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVV 425

Query: 229 SLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPV 288
           +   F+     L  ++ A   +Q MV   +   +                          
Sbjct: 426 TYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVV------------------------- 460

Query: 289 MKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGM 348
                 S+S +I    R      A Q+  +M   G+ P + TY   I+ +   R L    
Sbjct: 461 ------SYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEAC 514

Query: 349 EVLKIMQQNNLKPQDSTIATL-SVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDT 407
           ++ + M    L P + T  TL +  C   +E DL +AL        +      FL    T
Sbjct: 515 DLSQEMLDMGLPPDEFTYTTLINAYC---VEGDLNKAL-----HLHDEMIHKGFLPDAVT 566

Query: 408 MDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMD 467
                  +   A+ R+  R       LLF L       YEE ++ S V     I      
Sbjct: 567 YSVLINGLNKQARTREAKR-------LLFKLI------YEE-SVPSDVTYDTLIENC--- 609

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRELIQYF---CDSKTPLGTPTYNTVLHSLVEAQE 524
              +NI+    S+  L+K    +G++ E  + F    +     G   YN ++H       
Sbjct: 610 ---SNIEFK--SVVALIKGFCMKGLMHEADRVFESMVERNHKPGEAVYNVIIHGHCRGGN 664

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
             +A  ++K+M   G  P+  T   +I         +  S ++   +R     +      
Sbjct: 665 LPKAFNLYKEMIHSGFVPHTVTVITLIKALFKEGMNEEMSEVIGDTLRSCRLNEAELAKV 724

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGI 610
           L++I    G+ +  LN+L  ++ +G+
Sbjct: 725 LVEINHKEGNMEAVLNVLTDMAKDGL 750


>gi|224125710|ref|XP_002319656.1| predicted protein [Populus trichocarpa]
 gi|222858032|gb|EEE95579.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 116/511 (22%), Positives = 202/511 (39%), Gaps = 71/511 (13%)

Query: 197 TELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVAL 256
           T+L+K     +N+     +     KH    +F+    +  F +   ++SA   L  M   
Sbjct: 14  TKLIKGFFNSRNIDKATRVMGILEKHGKPDVFAYNAVISGFCKANRIESAKTVLDRMKRK 73

Query: 257 AMMGKLYINRTSEGRL-RSSRLDIPIPL--------NALPVMKVLRWSFSDVIHACGRTQ 307
                +  +    G      ++D+ + +        N  P +     +++ +I A     
Sbjct: 74  GFSPDVVTHNIMIGTFCGKGKIDLALKVFEELLKDNNCKPTL----ITYTILIEA--YIL 127

Query: 308 NSGLAEQLML--QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDST 365
             G+ E L L  +M S GL+P + TY+   R +  +  +    E ++ +     KP   T
Sbjct: 128 EGGIDEALKLLDEMLSRGLEPDTFTYNVITRGLCKEGKVDRAFEFVRTLNSRGCKPDVIT 187

Query: 366 IATLSVECSKALELDLAEALLDQI-SRCTNPK--PFSAFLAACDTMDKPERAIKIFAKMR 422
              L        + D  E  + +I SR   P    +S  +++     K E ++ +   M+
Sbjct: 188 YNILLRALLNQGKWDEGEKWMSEIFSRGCEPNVVTYSILISSLCRDGKIEESVNLVKVMK 247

Query: 423 QK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMK 481
           +K L PD   Y+ L + F        EG               ++DMA            
Sbjct: 248 EKGLTPDAYCYDPLIAAF------CREG---------------KLDMA------------ 274

Query: 482 NLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIP 541
                      I  L    CD   P     YNT++ +L +      A+EIF ++   G P
Sbjct: 275 -----------IEFLDCMICDGFLP-DIVNYNTIMAALCKNGNGDHAVEIFGKLDEVGCP 322

Query: 542 PNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNL 601
           PN ++YN M+           A  ++S M+  G  P  +TY +LI  L   G  DEA+ L
Sbjct: 323 PNVSSYNTMLSALWSSGDRYRALGMISQMLSKGIDPDVITYNSLISCLCRDGMVDEAIGL 382

Query: 602 L-DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYV 660
           L D++S    P+ ++ Y T+L   C+  RID    ++  M +N  QP+ +T   +  G  
Sbjct: 383 LADMLSGRFQPN-IVSYKTVLLGLCKAHRIDDAIEVLAAMIENGCQPNETTYTLLIEGI- 440

Query: 661 NCGFHNSAMEALQVLSMRMLCEEVSTLEEKR 691
             GF  S  +A+++ +   +   +S    KR
Sbjct: 441 --GFSGSRTQAMELANSLYIMNAISEDSFKR 469



 Score = 44.3 bits (103), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 25/106 (23%), Positives = 51/106 (48%), Gaps = 1/106 (0%)

Query: 570 MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
           MV   + P  +  T LIK   +  + D+A  ++ ++   G P DV  YN ++   C+  R
Sbjct: 1   MVAKDYQPDVILCTKLIKGFFNSRNIDKATRVMGILEKHGKP-DVFAYNAVISGFCKANR 59

Query: 630 IDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
           I+  + ++++M +    PD  T + +   +   G  + A++  + L
Sbjct: 60  IESAKTVLDRMKRKGFSPDVVTHNIMIGTFCGKGKIDLALKVFEEL 105



 Score = 39.7 bits (91), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 32/138 (23%), Positives = 62/138 (44%), Gaps = 8/138 (5%)

Query: 550 MIDCCSIIRCF------KSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLD 603
           +I C  +I+ F        A+ ++ ++ + G  P    Y A+I         + A  +LD
Sbjct: 10  VILCTKLIKGFFNSRNIDKATRVMGILEKHG-KPDVFAYNAVISGFCKANRIESAKTVLD 68

Query: 604 LVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQ-MHQNKVQPDPSTCHFVFSGYVNC 662
            +  +G   DV+ +N ++   C KG+ID+   + E+ +  N  +P   T   +   Y+  
Sbjct: 69  RMKRKGFSPDVVTHNIMIGTFCGKGKIDLALKVFEELLKDNNCKPTLITYTILIEAYILE 128

Query: 663 GFHNSAMEALQVLSMRML 680
           G  + A++ L  +  R L
Sbjct: 129 GGIDEALKLLDEMLSRGL 146


>gi|297797449|ref|XP_002866609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312444|gb|EFH42868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 724

 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 128/600 (21%), Positives = 238/600 (39%), Gaps = 91/600 (15%)

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFL-----GA 167
           M+++ I      ++ +M+   K G+  + + L+  +   Y   P    YN  L     G 
Sbjct: 131 MKDEGIVFKESLFISIMRDYDKAGFPGQTTRLMLEMRNVYSCEPTFKSYNVVLEILVSGN 190

Query: 168 CAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSL-S 226
           C K    V AN+  D++ SR +     T+  ++K       + +   +  D  KH  + +
Sbjct: 191 CHK----VAANVFYDML-SRKIPPTLFTFGVVMKALCAVNEVDSALSVLRDMTKHGCVPN 245

Query: 227 IFSLRKFVWSFTRLRDLKSAYETLQHMVALA-----------MMGKLYINRTSE------ 269
               +  + S ++   +  A + L+ M  +            ++G    +R +E      
Sbjct: 246 SVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVN 305

Query: 270 -------------------GRLRSSRLD--------IPIPLNALPVMKVLRWSFSDVIHA 302
                              G  +  R+D        IP P + +         F+ +IH 
Sbjct: 306 RMLIRGFTPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPTSVI---------FNTLIHG 356

Query: 303 C---GRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNL 359
               GR  ++      M+   S G+ P   TY+  I        +   +EVL+ M+    
Sbjct: 357 FVTHGRLDDAKAVLSDMVT--SYGIVPDVCTYNSLIYGYWKKGLVGLALEVLRDMRNKGC 414

Query: 360 KPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAA-CDTMDKPERAI 415
           KP   +   L     K  ++D A  LL+++S      N   F+  ++A C     PE A+
Sbjct: 415 KPNVYSYTILVDGFCKLGKIDEAYNLLNEMSADGLKPNTVGFNCLISAFCKEHRIPE-AV 473

Query: 416 KIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQ 474
           +IF +M R+  +PD+ T+  L S                +VD  K    +  DM    + 
Sbjct: 474 EIFREMPRKGCKPDVYTFNSLIS-------------GLCEVDEIKHALWLLRDMISEGVV 520

Query: 475 HSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEI 531
            + ++   L+ A    G I+E   L+       + L   TYN+++  L  A E  +A  +
Sbjct: 521 ANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSLLDEITYNSLIKGLCRAGEVDKARSL 580

Query: 532 FKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLD 591
           F++M   G+ P++ + NI+I+        + A      MV  G  P  +T+ +LI  L  
Sbjct: 581 FEKMLRDGLVPSSISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCR 640

Query: 592 YGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
            G  ++ L +   +  EGIP D + YNT++   C+ G +     ++++  ++   P+  T
Sbjct: 641 AGRIEDGLTMFRKLQAEGIPPDTVTYNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNDRT 700



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 90/402 (22%), Positives = 165/402 (41%), Gaps = 29/402 (7%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           +  +IH+  +      A QL+ +M  +G  P + T++  I  +     +    +++  M 
Sbjct: 249 YQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRML 308

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDKP 411
                P D T   L     K   +D A+ L  +I     PKP    F+  +    T  + 
Sbjct: 309 IRGFTPDDITYGYLMNGLCKIGRVDAAKDLFYRI-----PKPTSVIFNTLIHGFVTHGRL 363

Query: 412 ERAIKIFAKM--RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
           + A  + + M     + PD+ TY  L  ++G     Y +  +        R      DM 
Sbjct: 364 DDAKAVLSDMVTSYGIVPDVCTYNSL--IYG-----YWKKGLVGLALEVLR------DMR 410

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRE----LIQYFCDSKTPLGTPTYNTVLHSLVEAQES 525
               + +  S   L+      G I E    L +   D   P  T  +N ++ +  +    
Sbjct: 411 NKGCKPNVYSYTILVDGFCKLGKIDEAYNLLNEMSADGLKP-NTVGFNCLISAFCKEHRI 469

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
             A+EIF++M   G  P+  T+N +I     +   K A  L+  M+ +G    T+TY  L
Sbjct: 470 PEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTL 529

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           I   L  G+  EA  L++ +  +G   D + YN+++K  C  G +D    + E+M ++ +
Sbjct: 530 INAFLRRGEIKEARKLVNEMVFQGSLLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGL 589

Query: 646 QPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTL 687
            P   +C+ + +G    G    A+E  + + +R    ++ T 
Sbjct: 590 VPSSISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTF 631



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 72/160 (45%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           +YN VL  LV       A  +F  M +  IPP   T+ +++     +    SA +++  M
Sbjct: 178 SYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKALCAVNEVDSALSVLRDM 237

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
            + G  P ++ Y  LI  L      +EAL LL+ + L G   D   +N ++   C+  RI
Sbjct: 238 TKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRI 297

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAME 670
           +    ++ +M      PD  T  ++ +G    G  ++A +
Sbjct: 298 NEAAKMVNRMLIRGFTPDDITYGYLMNGLCKIGRVDAAKD 337



 Score = 52.8 bits (125), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 39/172 (22%), Positives = 71/172 (41%), Gaps = 8/172 (4%)

Query: 504 KTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSA 563
           K P    T+  V+ +L    E   A+ + + M   G  PN+  Y  +I   S       A
Sbjct: 206 KIPPTLFTFGVVMKALCAVNEVDSALSVLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEA 265

Query: 564 SALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKK 623
             L+  M   G  P   T+  +I  L  +   +EA  +++ + + G   D + Y  ++  
Sbjct: 266 LQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFTPDDITYGYLMNG 325

Query: 624 ACEKGRIDVIEFIIEQMHQNKVQPDPSTCHF--VFSGYVNCGFHNSAMEALQ 673
            C+ GR+D  + +  ++      P P++  F  +  G+V  G  + A   L 
Sbjct: 326 LCKIGRVDAAKDLFYRI------PKPTSVIFNTLIHGFVTHGRLDDAKAVLS 371



 Score = 40.8 bits (94), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 64/294 (21%), Positives = 115/294 (39%), Gaps = 20/294 (6%)

Query: 107 METWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLG 166
           +E  R M  K    N   Y +++   CK G ++EA NL+  +    G+ P    +N  + 
Sbjct: 403 LEVLRDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNLLNEMSAD-GLKPNTVGFNCLIS 461

Query: 167 ACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIW--EDYIKHYS 224
           A  K H +  A      M  +    +  T+  L+        +   H +W   D I    
Sbjct: 462 AFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIK--HALWLLRDMISEGV 519

Query: 225 LS-IFSLRKFVWSFTRLRDLKSAYETLQHMV-ALAMMGKLYINRTSEGRLRSSRLDIPIP 282
           ++   +    + +F R  ++K A + +  MV   +++ ++  N   +G  R+  +D    
Sbjct: 520 VANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSLLDEITYNSLIKGLCRAGEVDKARS 579

Query: 283 LNALPVMKVLRWSFSDVIHACGRTQN----SGLAE---QLMLQMQSLGLQPSSHTYDGFI 335
           L      K+LR        +C    N    SG+ E   +   +M   G  P   T++  I
Sbjct: 580 L----FEKMLRDGLVPSSISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLI 635

Query: 336 RAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL-SVECSKALELDLAEALLDQ 388
             +     + +G+ + + +Q   + P   T  TL S  C      D A  LLD+
Sbjct: 636 NGLCRAGRIEDGLTMFRKLQAEGIPPDTVTYNTLMSWLCKGGFVYD-ACLLLDE 688



 Score = 40.4 bits (93), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 39/196 (19%), Positives = 84/196 (42%), Gaps = 8/196 (4%)

Query: 469 ARNNIQHSHISMKNLLKALGAEG---MIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQ-- 523
           ++   +HS    + L+  LG+ G    I  L+    D         + +++    +A   
Sbjct: 97  SQKGYRHSFDVYQVLIGKLGSNGEFKTIDRLLMQMKDEGIVFKESLFISIMRDYDKAGFP 156

Query: 524 -ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTY 582
            ++ R M   + + +C   P   +YN++++      C K A+ +   M+     P   T+
Sbjct: 157 GQTTRLMLEMRNVYSC--EPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTF 214

Query: 583 TALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642
             ++K L    + D AL++L  ++  G   + ++Y T++    +  R++    ++E+M  
Sbjct: 215 GVVMKALCAVNEVDSALSVLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFL 274

Query: 643 NKVQPDPSTCHFVFSG 658
               PD  T + V  G
Sbjct: 275 MGCVPDAETFNDVILG 290


>gi|255563546|ref|XP_002522775.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538013|gb|EEF39626.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1071

 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 102/435 (23%), Positives = 183/435 (42%), Gaps = 31/435 (7%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ +I+   +    G A ++  +M  L L P+  TY+  I     D      + +L++M
Sbjct: 275 TYNSIINGFVKEGKIGAATRIFQEMSMLNLLPNCVTYNALIDGHCHDGNFEQALTILEMM 334

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKP--- 411
           +    KP + + + L     +  + +L++++L+++          A+ A  D + +    
Sbjct: 335 EATGPKPNEVSYSALLNGLCRHAKFELSKSILERMRMNGMIVGCIAYTAMIDGLCRNGLL 394

Query: 412 ERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
             ++K+  KM +  + PD+ T+ +L              N F +V   K +  I   M +
Sbjct: 395 NESVKLLDKMLKDGVVPDVVTFSVLI-------------NGFCRVGKIKNVKEIICKMYK 441

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQ-YFCDSKTPLGTPTY--NTVLHSLVEAQESHR 527
             +  + I    L+      G + E  + Y   S+       +  N ++ SL +  +   
Sbjct: 442 AGLAPNSIIYTTLIYNYCKTGDVVEAFKVYVAMSRIGYDANCFICNVLVSSLCKDGKVGV 501

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A   F  M   G  PN+ T++ +I+          A ++   M++ G +P   TY  L+K
Sbjct: 502 AEYFFHHMSKIGNVPNSITFDCIINGYGNSGNGLKAFSMFDEMIKAGHHPSHFTYGGLLK 561

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPH--DVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
            L   G F EA  LLD   L  IP   D + YNTIL +  + G +     + ++M Q  V
Sbjct: 562 ALCRAGKFKEAKRLLD--KLHYIPSAVDTVTYNTILVETFKSGMLTDAVALFDEMVQRNV 619

Query: 646 QPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDFED-LILAEDSE 704
            PD  T   +F+G +  G     + AL      +    VS  +   + F D L  A  S+
Sbjct: 620 LPDSYTYAIIFAGLIRRG---KMVAALHFYGNLLGKGAVSPEKVMYTTFVDGLFRAGQSK 676

Query: 705 AESRILQFCEDSNEN 719
           A    L FCED  +N
Sbjct: 677 AA---LYFCEDMEKN 688



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 92/198 (46%), Gaps = 3/198 (1%)

Query: 483 LLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCG 539
           L++    EGM+ + ++ F         P   T N +L  LV+ ++       FK+M    
Sbjct: 104 LIRVYLREGMVGDALETFRLMGIRGFNPSVYTCNMLLGKLVKERKVGAVWLFFKEMLARR 163

Query: 540 IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEAL 599
           + P+ +T+NI+I+   +    K A  L+  M   G+ P  +TY  ++      G +  AL
Sbjct: 164 VCPDVSTFNILINVLCVEGKLKKAGYLLKKMEESGYVPSVVTYNTVLNWYCKKGRYKAAL 223

Query: 600 NLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
            L+D +  +GI  D   YN ++   C+  R      ++++M +  + P+  T + + +G+
Sbjct: 224 ELIDQMGSKGIEADACTYNMLVDDLCKNNRSAKGYLLLKKMRKRMISPNEITYNSIINGF 283

Query: 660 VNCGFHNSAMEALQVLSM 677
           V  G   +A    Q +SM
Sbjct: 284 VKEGKIGAATRIFQEMSM 301



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 76/368 (20%), Positives = 151/368 (41%), Gaps = 31/368 (8%)

Query: 326 PSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIAT-LSVECSKALELDLAEA 384
           P   T++  I  +  +  L+    +LK M+++   P   T  T L+  C K      A  
Sbjct: 166 PDVSTFNILINVLCVEGKLKKAGYLLKKMEESGYVPSVVTYNTVLNWYCKKG-RYKAALE 224

Query: 385 LLDQISRCTNPKPFSAFLAACDTMDKPERAIK---IFAKMRQKL-RPDIRTYELLFSLF- 439
           L+DQ+           +    D + K  R+ K   +  KMR+++  P+  TY  + + F 
Sbjct: 225 LIDQMGSKGIEADACTYNMLVDDLCKNNRSAKGYLLLKKMRKRMISPNEITYNSIINGFV 284

Query: 440 --GNVNAP---YEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGA---EG 491
             G + A    ++E +M + + +    NA+      +      +++  +++A G    E 
Sbjct: 285 KEGKIGAATRIFQEMSMLNLLPNCVTYNALIDGHCHDGNFEQALTILEMMEATGPKPNEV 344

Query: 492 MIRELIQYFCD------SKTPL----------GTPTYNTVLHSLVEAQESHRAMEIFKQM 535
               L+   C       SK+ L          G   Y  ++  L      + ++++  +M
Sbjct: 345 SYSALLNGLCRHAKFELSKSILERMRMNGMIVGCIAYTAMIDGLCRNGLLNESVKLLDKM 404

Query: 536 KTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDF 595
              G+ P+  T++++I+    +   K+   ++  M + G  P ++ YT LI      GD 
Sbjct: 405 LKDGVVPDVVTFSVLINGFCRVGKIKNVKEIICKMYKAGLAPNSIIYTTLIYNYCKTGDV 464

Query: 596 DEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFV 655
            EA  +   +S  G   +  + N ++   C+ G++ V E+    M +    P+  T   +
Sbjct: 465 VEAFKVYVAMSRIGYDANCFICNVLVSSLCKDGKVGVAEYFFHHMSKIGNVPNSITFDCI 524

Query: 656 FSGYVNCG 663
            +GY N G
Sbjct: 525 INGYGNSG 532



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 77/355 (21%), Positives = 139/355 (39%), Gaps = 30/355 (8%)

Query: 310 GLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL 369
           G+AE     M  +G  P+S T+D  I    +         +   M +    P   T   L
Sbjct: 500 GVAEYFFHHMSKIGNVPNSITFDCIINGYGNSGNGLKAFSMFDEMIKAGHHPSHFTYGGL 559

Query: 370 SVECSKALELDLAEALLDQ---ISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-L 425
                +A +   A+ LLD+   I    +   ++  L           A+ +F +M Q+ +
Sbjct: 560 LKALCRAGKFKEAKRLLDKLHYIPSAVDTVTYNTILVETFKSGMLTDAVALFDEMVQRNV 619

Query: 426 RPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLK 485
            PD  TY ++F+                 +   K + A+      N +    +S + ++ 
Sbjct: 620 LPDSYTYAIIFA---------------GLIRRGKMVAALHF--YGNLLGKGAVSPEKVMY 662

Query: 486 ALGAEGMIR----ELIQYFCDSKTPLGT----PTYNTVLHSLVEAQESHRAMEIFKQM-K 536
               +G+ R    +   YFC+     G        N +L+      +  +A +IF  M  
Sbjct: 663 TTFVDGLFRAGQSKAALYFCEDMEKNGLCADLIATNVILNGYSRMGKMAKAGDIFTMMWS 722

Query: 537 TCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFD 596
              I P+ ATYNI++   +  +     S L ++M+R G +P  +T  +LI         D
Sbjct: 723 GITISPSLATYNILLHGYAKKKNLSKCSNLYNIMMRTGIFPDKLTCHSLILGFCKSAMLD 782

Query: 597 EALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
             L LL  + L+G+  D   +N ++ K CE   +     ++  M+   + PD +T
Sbjct: 783 VGLKLLKKMLLDGVAVDQCTFNMLIMKYCETDEVGKAFDLVNIMNLFDIFPDMTT 837



 Score = 46.6 bits (109), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 36/165 (21%), Positives = 74/165 (44%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           T+N +++ L    +  +A  + K+M+  G  P+  TYN +++       +K+A  L+  M
Sbjct: 170 TFNILINVLCVEGKLKKAGYLLKKMEESGYVPSVVTYNTVLNWYCKKGRYKAALELIDQM 229

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
              G      TY  L+  L       +   LL  +    I  + + YN+I+    ++G+I
Sbjct: 230 GSKGIEADACTYNMLVDDLCKNNRSAKGYLLLKKMRKRMISPNEITYNSIINGFVKEGKI 289

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
                I ++M    + P+  T + +  G+ + G    A+  L+++
Sbjct: 290 GAATRIFQEMSMLNLLPNCVTYNALIDGHCHDGNFEQALTILEMM 334



 Score = 43.5 bits (101), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 66/359 (18%), Positives = 135/359 (37%), Gaps = 65/359 (18%)

Query: 304  GRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQD 363
            G+   +G  +   +    + + PS  TY+  +      + L     +  IM +  + P  
Sbjct: 708  GKMAKAG--DIFTMMWSGITISPSLATYNILLHGYAKKKNLSKCSNLYNIMMRTGIFPDK 765

Query: 364  STIATLSVECSKALELDLAEALLD-------QISRCTNPKPFSAFLAA-CDTMDKPERAI 415
             T  +L +   K+  LD+   LL         + +CT    F+  +   C+T D+  +A 
Sbjct: 766  LTCHSLILGFCKSAMLDVGLKLLKKMLLDGVAVDQCT----FNMLIMKYCET-DEVGKAF 820

Query: 416  KIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQ 474
             +   M    + PD+ T++ + S+   V+                             +Q
Sbjct: 821  DLVNIMNLFDIFPDMTTHDSIISVLSRVST----------------------------VQ 852

Query: 475  HSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQ 534
             SH+ +  +L+     G I +  QY               +++ +      H A ++  +
Sbjct: 853  ESHLLLHEMLE----RGCIPDRRQYI-------------ALVNRMCRMGHIHGAFKLKDE 895

Query: 535  MKTCGIPPNAATYNIMIDCCSIIRCFK--SASALVSMMVRDGFYPQTMTYTALIKILLDY 592
            M+  GI       + ++    + +C K   A  ++  M+R    P   T+T L+ +    
Sbjct: 896  MEALGISSGDVAESALVR--GLAKCGKVEEAKLVLDFMLRKSLIPTIATFTTLMHMFCRN 953

Query: 593  GDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
                EAL L D +    +  DV+ YN ++   C  G +     + +++ Q  + P+ +T
Sbjct: 954  ESLVEALKLKDTMDFCDVKLDVIAYNVLISGLCADGDVASALKLYKEIKQRGLWPNMTT 1012


>gi|414883768|tpg|DAA59782.1| TPA: hypothetical protein ZEAMMB73_461975 [Zea mays]
          Length = 683

 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 92/384 (23%), Positives = 163/384 (42%), Gaps = 20/384 (5%)

Query: 283 LNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDR 342
           L  LP + V+    + VI  C        A +L   M S G  P  HTY   +  +    
Sbjct: 305 LGRLPEVNVVM--LNTVIRGCLTEGKLARATELYEMMGSKGCPPDVHTYSILMHGLCKLG 362

Query: 343 GLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI---SRCTNPKPFS 399
              + + +L  M++    P   T +TL     +    D A A+LDQ+       N + ++
Sbjct: 363 RFGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMLAKGFSMNSQGYN 422

Query: 400 AFLAACDTMDKPERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSA 458
             + A     K ++A ++  +M+ Q  +PDI TY  +     N +   E  ++F      
Sbjct: 423 GIIYALCKDGKLDQATRLVQEMKSQGCKPDICTYNTMIYHLCNNDLMEEAEHIFR----- 477

Query: 459 KRINAIEMDMARNNIQHSHISMKNLLKALGAEGM--IRELIQYFCDSKTPLGTPTYNTVL 516
              N IE  +  N I ++ +    L      EG+    E++ + C     L   +YN ++
Sbjct: 478 ---NLIEEGVVANGITYNTLIHALLRNGRWQEGLRLASEMLLHGCQ----LDVISYNGLI 530

Query: 517 HSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFY 576
            +L +     R+M + ++M T GI PN  +YN++I+        + A  L   M+  G  
Sbjct: 531 KALCKEGNVDRSMALLEEMVTKGIKPNNFSYNMLINELCKAGKVRDALELSKEMLNQGLT 590

Query: 577 PQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFI 636
           P  +TY  LI  L   G    ALNLL+ +  E +  D++ YN ++   C+   +D    +
Sbjct: 591 PDIVTYNTLINGLCKVGWTHAALNLLEKLPNENVHPDIVTYNILISWHCKVRLLDDAAML 650

Query: 637 IEQMHQNKVQPDPSTCHFVFSGYV 660
           +++     + P+  T   +   +V
Sbjct: 651 LDKAISGGIVPNERTWGMMVQNFV 674



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 86/381 (22%), Positives = 159/381 (41%), Gaps = 22/381 (5%)

Query: 296 FSDVIHACGRTQNSGLAEQLML--QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           +  VIHA       G+AE  ML  +M  +G     +T++  +  +     +R    ++  
Sbjct: 215 YQTVIHAL--VAQGGVAEAAMLLDEMLLMGCAADVNTFNDLVLGLCGLGRVREAARLVDR 272

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPER 413
           M      P   T   L     +  + D A A+L ++    N    +  +  C T  K  R
Sbjct: 273 MMTQGCMPSVVTYGFLLQGLCRTRQADEACAMLGRLPE-VNVVMLNTVIRGCLTEGKLAR 331

Query: 414 AIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNN 472
           A +++  M  K   PD+ TY +L      +      G   S V   + ++ +E      N
Sbjct: 332 ATELYEMMGSKGCPPDVHTYSILMHGLCKL------GRFGSAV---RMLDEMEEKGCAPN 382

Query: 473 IQHSHISMKNLLKALGAEGM---IRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAM 529
           I    ++   LL +    GM    R ++         + +  YN ++++L +  +  +A 
Sbjct: 383 I----VTYSTLLHSFCRNGMWDDARAMLDQMLAKGFSMNSQGYNGIIYALCKDGKLDQAT 438

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
            + ++MK+ G  P+  TYN MI         + A  +   ++ +G     +TY  LI  L
Sbjct: 439 RLVQEMKSQGCKPDICTYNTMIYHLCNNDLMEEAEHIFRNLIEEGVVANGITYNTLIHAL 498

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649
           L  G + E L L   + L G   DV+ YN ++K  C++G +D    ++E+M    ++P+ 
Sbjct: 499 LRNGRWQEGLRLASEMLLHGCQLDVISYNGLIKALCKEGNVDRSMALLEEMVTKGIKPNN 558

Query: 650 STCHFVFSGYVNCGFHNSAME 670
            + + + +     G    A+E
Sbjct: 559 FSYNMLINELCKAGKVRDALE 579



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 65/148 (43%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           +YN VL +L  A     A+ ++++M    +PP   T+ +       +     A AL+  M
Sbjct: 144 SYNVVLSTLARADCHADALLLYRRMLRDRVPPTTFTFGVAARALCRLGRAGDALALLRGM 203

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
            R G  P  + Y  +I  L+  G   EA  LLD + L G   DV  +N ++   C  GR+
Sbjct: 204 ARHGCVPDAVLYQTVIHALVAQGGVAEAAMLLDEMLLMGCAADVNTFNDLVLGLCGLGRV 263

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
                ++++M      P   T  F+  G
Sbjct: 264 REAARLVDRMMTQGCMPSVVTYGFLLQG 291



 Score = 48.9 bits (115), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 61/138 (44%), Gaps = 1/138 (0%)

Query: 527 RAMEIFKQM-KTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
           RA+ +  QM +   + P+  +YN+++   +   C   A  L   M+RD   P T T+   
Sbjct: 124 RALHLLDQMPRRFAVSPSFRSYNVVLSTLARADCHADALLLYRRMLRDRVPPTTFTFGVA 183

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
            + L   G   +AL LL  ++  G   D +LY T++     +G +     ++++M     
Sbjct: 184 ARALCRLGRAGDALALLRGMARHGCVPDAVLYQTVIHALVAQGGVAEAAMLLDEMLLMGC 243

Query: 646 QPDPSTCHFVFSGYVNCG 663
             D +T + +  G    G
Sbjct: 244 AADVNTFNDLVLGLCGLG 261


>gi|296081012|emb|CBI18516.3| unnamed protein product [Vitis vinifera]
          Length = 967

 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 131/591 (22%), Positives = 225/591 (38%), Gaps = 42/591 (7%)

Query: 111 RMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAK 170
           + MEE         Y  ++   CK G  + A  LI ++  + GI   +  YN F+     
Sbjct: 257 KQMEENGFVPTIVTYNTLLNWYCKKGRYKAAIELIDYMICK-GIEADVCTYNVFIDNLCT 315

Query: 171 LHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH-YSLSIFS 229
            H    A L L  M   M+  NEVTY  L+   V +  +    +++ +  K   S +  +
Sbjct: 316 NHRSAKAYLLLKKMRKEMISPNEVTYNTLINGFVKEGKIGVAAQVFNEMSKFDLSPNCVT 375

Query: 230 LRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVM 289
               +     + D + A   L HM A  +       R +E    +  + +   +N     
Sbjct: 376 YNALIGGHCHVGDFEEALRLLDHMEAAGL-------RLNEHGNVTEAMKVYAVMNC-NGH 427

Query: 290 KVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGME 349
               ++ + ++ +  R    G AE+ +  M  +GL P+S TYD  I    S     N   
Sbjct: 428 GADHFTCNVLVSSLCRDGKLGEAEKFLCHMSRIGLVPNSITYDCIINGYGSIGDPLNAFS 487

Query: 350 VLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ---ISRCTNPKPFSAFLAACD 406
               M +    P   T  +L     K   L  A+  L++   I    +   ++  LA   
Sbjct: 488 FFDDMIKCGQHPSFFTYGSLLKGLCKGGNLVEAKKFLNRLHYIPGAVDSVMYNTLLAETC 547

Query: 407 TMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIE 465
                  A+ +F KM Q  + PD  TY  L +             +  +  +   +    
Sbjct: 548 KSGNLHEAVALFDKMVQNNVLPDSYTYSSLLT------------GLCRKGKAVTAVCLFG 595

Query: 466 MDMARNNIQHSHISMKNLLKALGAEGMIRELIQYF---CDSKTPLGTPTYNTVLHSLVEA 522
             M R  +  +H+    L+  L   G  +    +F       T   T  +N ++ S    
Sbjct: 596 TAMGRGTLFPNHVMYTCLVDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRR 655

Query: 523 QESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTY 582
            +  +A + F  M+  G+ PN ATYNI++   S  +      +L S M+R+G +P  +T+
Sbjct: 656 GQMMKANDFFSTMRWWGVCPNLATYNILLHGFSKKQALLRYLSLYSTMMREGIFPDKLTF 715

Query: 583 TALIKILLDYGDFDEALNLLDLVSLEG---IPHDVL---------LYNTILKKACEKGRI 630
            +LI  L   G  D  + LL  + +E    + H++L          Y T++   C  G I
Sbjct: 716 HSLILGLSKSGIPDLGVKLLGKMIMEESTVVLHEMLENGVIPKHAQYITLINGMCRVGDI 775

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEAL-QVLSMRML 680
                + ++M              +  G ++CG    AM  L  +L MR+L
Sbjct: 776 QGAFKLKDEMEALGFGSHEVAESAMVRGLLHCGKTEDAMLVLDHMLRMRLL 826



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 80/166 (48%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           T N +L S+V+ + +     +F++M   GI PN  T+NI+I+   +    K A  L+  M
Sbjct: 200 TCNMILASMVKDKRTELVWSLFREMSDKGICPNVGTFNILINGLCVEGNLKKAGNLLKQM 259

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
             +GF P  +TY  L+      G +  A+ L+D +  +GI  DV  YN  +   C   R 
Sbjct: 260 EENGFVPTIVTYNTLLNWYCKKGRYKAAIELIDYMICKGIEADVCTYNVFIDNLCTNHRS 319

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
                ++++M +  + P+  T + + +G+V  G    A +    +S
Sbjct: 320 AKAYLLLKKMRKEMISPNEVTYNTLINGFVKEGKIGVAAQVFNEMS 365



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 70/353 (19%), Positives = 135/353 (38%), Gaps = 47/353 (13%)

Query: 326 PSSHTYDGFIRAIVSDRGLRNGMEVLKI------MQQNNLKPQDSTIATLSVECSKALEL 379
           P S+TY   +  +      R G  V  +      M +  L P       L    SKA   
Sbjct: 569 PDSYTYSSLLTGLC-----RKGKAVTAVCLFGTAMGRGTLFPNHVMYTCLVDGLSKAGHP 623

Query: 380 DLAEALLDQISR---CTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELL 435
             A    +++ +   C +   F+A + +C    +  +A   F+ MR   + P++ TY +L
Sbjct: 624 KAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMMKANDFFSTMRWWGVCPNLATYNIL 683

Query: 436 FSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEG---- 491
                         + FS+  +  R  ++   M R  I    ++  +L+  L   G    
Sbjct: 684 L-------------HGFSKKQALLRYLSLYSTMMREGIFPDKLTFHSLILGLSKSGIPDL 730

Query: 492 -------MIRE----LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGI 540
                  MI E    ++    ++        Y T+++ +    +   A ++  +M+  G 
Sbjct: 731 GVKLLGKMIMEESTVVLHEMLENGVIPKHAQYITLINGMCRVGDIQGAFKLKDEMEALGF 790

Query: 541 PPNAATYNIMIDCCSIIRCFKSASALVSM--MVRDGFYPQTMTYTALIKILLDYGDFDEA 598
             +    + M+    ++ C K+  A++ +  M+R    P   T+T L+          EA
Sbjct: 791 GSHEVAESAMVR--GLLHCGKTEDAMLVLDHMLRMRLLPTIATFTTLMHRFCRDAKIAEA 848

Query: 599 LNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
           L L  ++ L G+  DV+ YN ++   C  G       + E+M    + P+ +T
Sbjct: 849 LKLKGVMELCGLKLDVVAYNVLIMGMCANGDSAAAFELYEEMRHRDLCPNITT 901


>gi|224090111|ref|XP_002308939.1| predicted protein [Populus trichocarpa]
 gi|222854915|gb|EEE92462.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score = 96.7 bits (239), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 102/395 (25%), Positives = 171/395 (43%), Gaps = 35/395 (8%)

Query: 299 VIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNN 358
           +I+A GR+     A  +M  M    + PS  TY+  I A  S    R  +++ K M +N 
Sbjct: 176 LINAHGRSGQWRWAMNIMEDMLQKAIPPSRSTYNNLINACGSSGNWREALKLCKKMTENG 235

Query: 359 LKPQDSTIATLSVECSKALELDLAEAL-LDQISRCTNPKPFSAFLAA---CDT-MDKPER 413
           + P D     + +   K      A+AL   ++ + TN +P +  L     C T + + E+
Sbjct: 236 VGP-DLVTHNIILSAYKT-GAQYAKALSYFELMKGTNIRPDTTTLNIIIYCLTKLGQYEK 293

Query: 414 AIKIFAKMRQK---LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           AI IF  MR+K     PD+ T+  +  L+ +VN          Q+++ +   A+   M  
Sbjct: 294 AIGIFKSMREKRAECHPDVVTFTSIIHLY-SVNG---------QIENCR---AVFSTMVA 340

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHR 527
             ++ + +S   L+ A  + GM +E +  F   K     P   +Y ++L+S   +Q+  +
Sbjct: 341 EGLKPNIVSYNTLMGAYASHGMNKEALSVFNAIKNSGLRPDVVSYTSLLNSYGRSQQPKK 400

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A E+F+ MK   + PN  +YN MID          A  ++  M +DG YP  ++   L  
Sbjct: 401 AREVFEMMKRDKLKPNIVSYNAMIDAYGSNGLLAEAVEVLREMEQDGIYPNAVSICTL-- 458

Query: 588 ILLDYGDFDEALNL---LDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
            L   G     +N+   L       I  + + YN+ +      G  +    +   M ++K
Sbjct: 459 -LAACGRCSRKVNIDVVLQAAERRHIKLNTIAYNSAIGSYMNVGEFEKATSMYRSMRKSK 517

Query: 645 VQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRM 679
           V PD  T   + SG   C       EAL+ LS  M
Sbjct: 518 VIPDAVTFTVLISG---CCKMTKYCEALEFLSEMM 549



 Score = 68.9 bits (167), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 110/546 (20%), Positives = 208/546 (38%), Gaps = 78/546 (14%)

Query: 93  ILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERY 152
           ++N   RS    + M     M +K I  +   Y  ++ A    G   EA  L   + E  
Sbjct: 176 LINAHGRSGQWRWAMNIMEDMLQKAIPPSRSTYNNLINACGSSGNWREALKLCKKMTEN- 234

Query: 153 GIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELL----KLAVWQKN 208
           G+ P L  +N  L A         A    +LM    +  +  T   ++    KL  ++K 
Sbjct: 235 GVGPDLVTHNIILSAYKTGAQYAKALSYFELMKGTNIRPDTTTLNIIIYCLTKLGQYEKA 294

Query: 209 LSAVHEIWEDYIK-HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRT 267
           +     + E   + H  +  F+      S   L  +    E  + + +  +   L  N  
Sbjct: 295 IGIFKSMREKRAECHPDVVTFT------SIIHLYSVNGQIENCRAVFSTMVAEGLKPNIV 348

Query: 268 SEGRLRSSRLDIPIPLNALPVMKVLR--------WSFSDVIHACGRTQNSGLAEQLMLQM 319
           S   L  +     +   AL V   ++         S++ ++++ GR+Q    A ++   M
Sbjct: 349 SYNTLMGAYASHGMNKEALSVFNAIKNSGLRPDVVSYTSLLNSYGRSQQPKKAREVFEMM 408

Query: 320 QSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV---ECSKA 376
           +   L+P+  +Y+  I A  S+  L   +EVL+ M+Q+ + P   +I TL      CS+ 
Sbjct: 409 KRDKLKPNIVSYNAMIDAYGSNGLLAEAVEVLREMEQDGIYPNAVSICTLLAACGRCSRK 468

Query: 377 LELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELL 435
           + +D+     ++     N   +++ + +   + + E+A  ++  MR+ K+ PD  T+ +L
Sbjct: 469 VNIDVVLQAAERRHIKLNTIAYNSAIGSYMNVGEFEKATSMYRSMRKSKVIPDAVTFTVL 528

Query: 436 FSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRE 495
            S                                          M    +AL       E
Sbjct: 529 IS--------------------------------------GCCKMTKYCEAL-------E 543

Query: 496 LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCS 555
            +    D K P+    Y++    + EA+       +F +MK  G  P+  TY +M+   +
Sbjct: 544 FLSEMMDLKIPMTKEAYSS--GKITEAE------SMFNKMKMAGCSPDVVTYTMMLHAYN 595

Query: 556 IIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIP-HDV 614
               +K A AL+  M      P T+  +AL++     GD  + L L + +  + IP  D 
Sbjct: 596 AAEHWKKACALLQEMEEYNIQPDTIACSALMRAFNKGGDPSKVLILAEFMREKEIPLSDA 655

Query: 615 LLYNTI 620
           + +  +
Sbjct: 656 IFFEMV 661



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/167 (21%), Positives = 71/167 (42%), Gaps = 4/167 (2%)

Query: 489 AEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYN 548
           A G+  E+ ++ C         T N ++++   + +   AM I + M    IPP+ +TYN
Sbjct: 154 ARGLFFEMQKWRCKPDAE----TCNALINAHGRSGQWRWAMNIMEDMLQKAIPPSRSTYN 209

Query: 549 IMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLE 608
            +I+ C     ++ A  L   M  +G  P  +T+  ++        + +AL+  +L+   
Sbjct: 210 NLINACGSSGNWREALKLCKKMTENGVGPDLVTHNIILSAYKTGAQYAKALSYFELMKGT 269

Query: 609 GIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFV 655
            I  D    N I+    + G+ +    I + M + + +  P    F 
Sbjct: 270 NIRPDTTTLNIIIYCLTKLGQYEKAIGIFKSMREKRAECHPDVVTFT 316



 Score = 45.4 bits (106), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 38/170 (22%), Positives = 71/170 (41%), Gaps = 2/170 (1%)

Query: 509 TPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVS 568
           T  YN ++        + +A  +F +M+     P+A T N +I+       ++ A  ++ 
Sbjct: 135 TDIYNMMIRLHARHNWTDQARGLFFEMQKWRCKPDAETCNALINAHGRSGQWRWAMNIME 194

Query: 569 MMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
            M++    P   TY  LI      G++ EAL L   ++  G+  D++ +N IL       
Sbjct: 195 DMLQKAIPPSRSTYNNLINACGSSGNWREALKLCKKMTENGVGPDLVTHNIILSAYKTGA 254

Query: 629 RIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678
           +        E M    ++PD +T + +       G +  A+   +  SMR
Sbjct: 255 QYAKALSYFELMKGTNIRPDTTTLNIIIYCLTKLGQYEKAIGIFK--SMR 302


>gi|224143015|ref|XP_002324819.1| predicted protein [Populus trichocarpa]
 gi|222866253|gb|EEF03384.1| predicted protein [Populus trichocarpa]
          Length = 552

 Score = 96.7 bits (239), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 80/381 (20%), Positives = 166/381 (43%), Gaps = 21/381 (5%)

Query: 315 LMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECS 374
           ++ Q++  G+ P S  ++  I A      + + ME    MQ+N +KP  ST  TL     
Sbjct: 70  IISQVEENGMNPDSIFFNAVINAFSESGNMESAMETFWKMQENGMKPTTSTYNTLIKGYG 129

Query: 375 KALELDLAEALLDQISRCTNPKP----FSAFLAA-CDTMDKPERAIKIFAKMRQKLRPDI 429
            A + + +  LL+ +S+  N KP    ++  + A C+     E    ++  +   ++PD+
Sbjct: 130 IAGKPEESVKLLELMSQEGNVKPNLRTYNVLVRAWCNKKRITEAWNVVYKMIASGIQPDV 189

Query: 430 RTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGA 489
            TY  + + +    A          +D A+    + ++M  N +Q +  +   ++     
Sbjct: 190 VTYNTIATAYAQKGA----------LDQAE---GVILEMQNNGVQPNERTCGIIMSGYCK 236

Query: 490 EGMIRELIQYFCDSKTPLGTPT---YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAAT 546
           EG IRE +++    K     P    +N+++   V   +     E+   M+  G+ P+  T
Sbjct: 237 EGRIREALRFAYRMKELGIHPNLVIFNSLIKGFVAIMDRDGVDEVLNLMEEFGVKPDVIT 296

Query: 547 YNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVS 606
           ++ +++  S     +    +   MV+ G  P    Y+ L K  +   + ++A  LL  + 
Sbjct: 297 FSTIMNAWSTAGFMEKCREIFDDMVKAGIEPDAHAYSILAKGYVRAQEPEKAEELLTTMI 356

Query: 607 LEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHN 666
             G   +V+++ T++   C  G++D    + ++M Q  + P+  T   +  G+       
Sbjct: 357 KSGFQPNVVIFTTVISGWCSAGKMDYAVRVFDKMCQRGISPNLKTFETLIWGFAEARQPW 416

Query: 667 SAMEALQVLSMRMLCEEVSTL 687
            A E LQ+++   +  E ST+
Sbjct: 417 KAEEILQIMTEFEVQPEKSTM 437



 Score = 47.4 bits (111), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 25/116 (21%), Positives = 55/116 (47%)

Query: 561 KSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTI 620
           + A ++   ++  G  P  ++YT L+  L     FD   +++  V   G+  D + +N +
Sbjct: 30  QEAESIFYSLIEGGHKPSLISYTTLLAALTMQKRFDSIYSIISQVEENGMNPDSIFFNAV 89

Query: 621 LKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
           +    E G ++       +M +N ++P  ST + +  GY   G    +++ L+++S
Sbjct: 90  INAFSESGNMESAMETFWKMQENGMKPTTSTYNTLIKGYGIAGKPEESVKLLELMS 145



 Score = 46.6 bits (109), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 50/260 (19%), Positives = 99/260 (38%), Gaps = 43/260 (16%)

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
           M+   +  N +   ++M   CK G + EA    Y + E  GI+P L ++NS +     + 
Sbjct: 215 MQNNGVQPNERTCGIIMSGYCKEGRIREALRFAYRMKE-LGIHPNLVIFNSLIKGFVAIM 273

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK------HYSLS 226
                +  L+LM+   V  + +T++ ++        +    EI++D +K       ++ S
Sbjct: 274 DRDGVDEVLNLMEEFGVKPDVITFSTIMNAWSTAGFMEKCREIFDDMVKAGIEPDAHAYS 333

Query: 227 IFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNAL 286
           I +       + R ++ + A E L  M+       + I                      
Sbjct: 334 ILAK-----GYVRAQEPEKAEELLTTMIKSGFQPNVVI---------------------- 366

Query: 287 PVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRN 346
                    F+ VI           A ++  +M   G+ P+  T++  I      R    
Sbjct: 367 ---------FTTVISGWCSAGKMDYAVRVFDKMCQRGISPNLKTFETLIWGFAEARQPWK 417

Query: 347 GMEVLKIMQQNNLKPQDSTI 366
             E+L+IM +  ++P+ ST+
Sbjct: 418 AEEILQIMTEFEVQPEKSTM 437


>gi|15221674|ref|NP_176496.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169918|sp|Q9CAN5.1|PPR98_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63080, mitochondrial; Flags: Precursor
 gi|12323262|gb|AAG51614.1|AC010795_18 unknown protein; 41955-40111 [Arabidopsis thaliana]
 gi|332195930|gb|AEE34051.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 614

 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 95/416 (22%), Positives = 170/416 (40%), Gaps = 30/416 (7%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A  L+ QM  +G QP + T+   +  +         + +++ M     +P   T   +  
Sbjct: 154 AVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVIN 213

Query: 372 ECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDK---PERAIKIFAKMRQK-LRP 427
              K  E DLA  LL+++ +         +    D++ K    + A+ +F +M  K +RP
Sbjct: 214 GLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRP 273

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL 487
           D+ TY  L S   N          + +   A R+ +   DM    I  + ++  +L+ A 
Sbjct: 274 DVFTYSSLISCLCN----------YGRWSDASRLLS---DMLERKINPNVVTFNSLIDAF 320

Query: 488 GAEG-------MIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGI 540
             EG       +  E+IQ   D        TYN++++          A +IF  M +   
Sbjct: 321 AKEGKLIEAEKLFDEMIQRSIDPNIV----TYNSLINGFCMHDRLDEAQQIFTLMVSKDC 376

Query: 541 PPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALN 600
            P+  TYN +I+     +       L   M R G    T+TYT LI       D D A  
Sbjct: 377 LPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQM 436

Query: 601 LLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYV 660
           +   +  +G+  +++ YNT+L   C+ G+++    + E + ++K++PD  T + +  G  
Sbjct: 437 VFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMC 496

Query: 661 NCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDFEDLILAEDSEAESRILQFCEDS 716
             G      +    LS++ +  +V       S F    L E  EA +  ++  ED 
Sbjct: 497 KAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKE--EAYTLFIKMKEDG 550



 Score = 96.3 bits (238), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 113/531 (21%), Positives = 219/531 (41%), Gaps = 25/531 (4%)

Query: 155 YPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHE 214
           +P +  ++  L A AK+          + M+   V  N  TY  ++     +  LS    
Sbjct: 62  FPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYNIMINCLCRRSQLSFALA 121

Query: 215 IWEDYIK-HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRT-SEGRL 272
           I    +K  Y  SI +L   +  F     +  A   +  MV +          T   G  
Sbjct: 122 ILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLF 181

Query: 273 RSSRLDIPIPLNALPVMKVLR---WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSH 329
           + ++    + L    V+K  +    ++  VI+   +     LA  L+ +M+   ++    
Sbjct: 182 QHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVV 241

Query: 330 TYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL-SVECSKALELDLAEALLDQ 388
            Y   I ++   R + + + +   M    ++P   T ++L S  C+     D +  L D 
Sbjct: 242 IYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDM 301

Query: 389 ISRCTNPK--PFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAP 445
           + R  NP    F++ + A     K   A K+F +M Q+ + P+I TY  L + F      
Sbjct: 302 LERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFC----- 356

Query: 446 YEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCD-SK 504
                M  ++D A++I  +   M   +     ++   L+        + + ++ F D S+
Sbjct: 357 -----MHDRLDEAQQIFTL---MVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSR 408

Query: 505 TPL--GTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKS 562
             L   T TY T++H   +A +   A  +FKQM + G+ PN  TYN ++D        + 
Sbjct: 409 RGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEK 468

Query: 563 ASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILK 622
           A  +   + +    P   TY  + + +   G  ++  +L   +SL+G+  DV+ YNT++ 
Sbjct: 469 AMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMIS 528

Query: 623 KACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
             C+KG  +    +  +M ++   PD  T + +   ++  G   ++ E ++
Sbjct: 529 GFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIK 579



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/248 (20%), Positives = 104/248 (41%), Gaps = 20/248 (8%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A+Q+   M S    P   TY+  I      + + +GME+ + M +  L     T  TL  
Sbjct: 364 AQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIH 423

Query: 372 ECSKALELDLAEALLDQ-ISRCTNPK--PFSAFLAACDTMDKPERAIKIFAKMRQ-KLRP 427
              +A + D A+ +  Q +S   +P    ++  L       K E+A+ +F  +++ K+ P
Sbjct: 424 GFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEP 483

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL 487
           DI TY ++           +  ++F               ++   ++   I+   ++   
Sbjct: 484 DIYTYNIMSEGMCKAGKVEDGWDLFCS-------------LSLKGVKPDVIAYNTMISGF 530

Query: 488 GAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNA 544
             +G+  E    F   K     P   TYNT++ + +   +   + E+ K+M++C    +A
Sbjct: 531 CKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIKEMRSCRFAGDA 590

Query: 545 ATYNIMID 552
           +TY ++ D
Sbjct: 591 STYGLVTD 598



 Score = 56.2 bits (134), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 76/388 (19%), Positives = 147/388 (37%), Gaps = 38/388 (9%)

Query: 54  ATQMQIVDALC-RGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRM 112
            T   +++ LC RGE   A +LL  +           +  +++   +       +  +  
Sbjct: 206 VTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTE 265

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
           M+ K I  +   Y  ++  LC  G   +AS L+  + ER  I P +  +NS + A AK  
Sbjct: 266 MDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLER-KINPNVVTFNSLIDAFAKEG 324

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSL-SIFSLR 231
            ++ A    D M  R +  N VTY  L+        L    +I+   +    L  + +  
Sbjct: 325 KLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYN 384

Query: 232 KFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKV 291
             +  F + + +    E  + M    ++G                               
Sbjct: 385 TLINGFCKAKKVVDGMELFRDMSRRGLVGN------------------------------ 414

Query: 292 LRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVL 351
              +++ +IH   +  +   A+ +  QM S G+ P+  TY+  +  +  +  L   M V 
Sbjct: 415 -TVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVF 473

Query: 352 KIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQIS-RCTNPK--PFSAFLAACDTM 408
           + +Q++ ++P   T   +S    KA +++    L   +S +   P    ++  ++     
Sbjct: 474 EYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKK 533

Query: 409 DKPERAIKIFAKMRQKLR-PDIRTYELL 435
              E A  +F KM++    PD  TY  L
Sbjct: 534 GLKEEAYTLFIKMKEDGPLPDSGTYNTL 561


>gi|357441365|ref|XP_003590960.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480008|gb|AES61211.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 590

 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 102/382 (26%), Positives = 164/382 (42%), Gaps = 24/382 (6%)

Query: 303 CGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQ 362
           CGR +   LA ++M Q+     +P+  TY   I A ++  G+   M++L  M    L+P 
Sbjct: 192 CGRGR-LDLALRVMDQLLKDNCKPTVITYTILIEATITQGGIDEAMKLLDEMLSRGLRPD 250

Query: 363 DSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKPERAIKIFA 419
             T   +     K   LD A   L +IS+         ++  L       K E   K+ +
Sbjct: 251 RYTYNVVVNGMCKEGMLDRAFEFLSRISKNGCVAGVSTYNILLRDLLNEGKWEYGEKLMS 310

Query: 420 KMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHI 478
            M  K   P+  TY  L      + A   +G    ++D AK +  +   M    +     
Sbjct: 311 DMLVKGCEPNPITYSTL------ITALCRDG----KIDEAKNVLKV---MKEKALAPDGY 357

Query: 479 SMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQM 535
           S   L+ AL  EG +   I++  D  +    P   +YN++L SL +   +  A+ IF+++
Sbjct: 358 SYDPLISALCREGKVDLAIEFLDDMISGGHLPDILSYNSILASLCKNGNADEALNIFEKL 417

Query: 536 KTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDF 595
              G PPNA +YN +            A  ++  M+ +G  P  +TY +LI  L   G  
Sbjct: 418 GEVGCPPNAGSYNTLFGALWSSGDKIRALGMILEMLSNGIDPDEITYNSLISCLCRDGLV 477

Query: 596 DEALNLL-DLVSLEGIPHDVLLYNTILKKACEKGR-IDVIEFIIEQMHQNKVQPDPSTCH 653
           D+A+ LL D+   E     V+ YNT+L   C+  R ID IE ++  M      P+ +T  
Sbjct: 478 DQAIELLVDMFESEKCQPTVISYNTVLLGLCKVQRIIDAIE-VLAAMVNEGCLPNETTYT 536

Query: 654 FVFSGYVNCGFHNSAMEALQVL 675
            +  G    G+   AME   +L
Sbjct: 537 LLIQGIGFAGWRYDAMELANLL 558



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 101/447 (22%), Positives = 183/447 (40%), Gaps = 40/447 (8%)

Query: 126 LLMMQALCKGGY----LEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCL 181
           +++   L KG +    +E+A  ++  L E++G  P +  YN+ +    K   + HA+  L
Sbjct: 112 VILCTKLIKGFFNMKKIEKAIQVMEIL-EKHG-KPDVFAYNAVISGFCKADRVDHASKVL 169

Query: 182 DLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK-HYSLSIFSLRKFVWSFTRL 240
           D M  R    + VTY  L+     +  L     + +  +K +   ++ +    + +    
Sbjct: 170 DRMKKRGFEPDVVTYNILIGNFCGRGRLDLALRVMDQLLKDNCKPTVITYTILIEATITQ 229

Query: 241 RDLKSAYETLQHMVALAMMGKLYI-NRTSEGRLRSSRLDIPIPL-------NALPVMKVL 292
             +  A + L  M++  +    Y  N    G  +   LD              +  +   
Sbjct: 230 GGIDEAMKLLDEMLSRGLRPDRYTYNVVVNGMCKEGMLDRAFEFLSRISKNGCVAGVSTY 289

Query: 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
                D+++  G+ +     E+LM  M   G +P+  TY   I A+  D  +     VLK
Sbjct: 290 NILLRDLLNE-GKWE---YGEKLMSDMLVKGCEPNPITYSTLITALCRDGKIDEAKNVLK 345

Query: 353 IMQQNNLKPQDSTIATLSVECSKALELDLA-EALLDQISRCTNPK--PFSAFLAACDTMD 409
           +M++  L P   +   L     +  ++DLA E L D IS    P    +++ LA+     
Sbjct: 346 VMKEKALAPDGYSYDPLISALCREGKVDLAIEFLDDMISGGHLPDILSYNSILASLCKNG 405

Query: 410 KPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
             + A+ IF K+ +    P+  +Y  LF            G ++S  D  + +  I ++M
Sbjct: 406 NADEALNIFEKLGEVGCPPNAGSYNTLF------------GALWSSGDKIRALGMI-LEM 452

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRELIQYFCD----SKTPLGTPTYNTVLHSLVEAQE 524
             N I    I+  +L+  L  +G++ + I+   D     K      +YNTVL  L + Q 
Sbjct: 453 LSNGIDPDEITYNSLISCLCRDGLVDQAIELLVDMFESEKCQPTVISYNTVLLGLCKVQR 512

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMI 551
              A+E+   M   G  PN  TY ++I
Sbjct: 513 IIDAIEVLAAMVNEGCLPNETTYTLLI 539



 Score = 70.9 bits (172), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 66/285 (23%), Positives = 131/285 (45%), Gaps = 21/285 (7%)

Query: 398 FSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVD 456
           ++A ++     D+ + A K+  +M+++   PD+ TY +L   F              ++D
Sbjct: 149 YNAVISGFCKADRVDHASKVLDRMKKRGFEPDVVTYNILIGNFCGR----------GRLD 198

Query: 457 SAKRINAIEMD-MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TY 512
            A R+    MD + ++N + + I+   L++A   +G I E ++   +  +    P   TY
Sbjct: 199 LALRV----MDQLLKDNCKPTVITYTILIEATITQGGIDEAMKLLDEMLSRGLRPDRYTY 254

Query: 513 NTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVR 572
           N V++ + +     RA E   ++   G     +TYNI++        ++    L+S M+ 
Sbjct: 255 NVVVNGMCKEGMLDRAFEFLSRISKNGCVAGVSTYNILLRDLLNEGKWEYGEKLMSDMLV 314

Query: 573 DGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDV 632
            G  P  +TY+ LI  L   G  DEA N+L ++  + +  D   Y+ ++   C +G++D+
Sbjct: 315 KGCEPNPITYSTLITALCRDGKIDEAKNVLKVMKEKALAPDGYSYDPLISALCREGKVDL 374

Query: 633 -IEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
            IEF ++ M      PD  + + + +     G  + A+   + L 
Sbjct: 375 AIEF-LDDMISGGHLPDILSYNSILASLCKNGNADEALNIFEKLG 418



 Score = 67.0 bits (162), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 82/357 (22%), Positives = 135/357 (37%), Gaps = 52/357 (14%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A Q+M  ++  G +P    Y+  I        + +  +VL  M++   +P   T   L  
Sbjct: 131 AIQVMEILEKHG-KPDVFAYNAVISGFCKADRVDHASKVLDRMKKRGFEPDVVTYNILIG 189

Query: 372 ECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDKPERAIKIFAKMRQK-LR 426
                  LDLA  ++DQ+ +  N KP    ++  + A  T    + A+K+  +M  + LR
Sbjct: 190 NFCGRGRLDLALRVMDQLLK-DNCKPTVITYTILIEATITQGGIDEAMKLLDEMLSRGLR 248

Query: 427 PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKA 486
           PD  TY ++      VN   +EG +    +   RI+                  KN   A
Sbjct: 249 PDRYTYNVV------VNGMCKEGMLDRAFEFLSRIS------------------KNGCVA 284

Query: 487 LGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAAT 546
                                G  TYN +L  L+   +     ++   M   G  PN  T
Sbjct: 285 ---------------------GVSTYNILLRDLLNEGKWEYGEKLMSDMLVKGCEPNPIT 323

Query: 547 YNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVS 606
           Y+ +I           A  ++ +M      P   +Y  LI  L   G  D A+  LD + 
Sbjct: 324 YSTLITALCRDGKIDEAKNVLKVMKEKALAPDGYSYDPLISALCREGKVDLAIEFLDDMI 383

Query: 607 LEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
             G   D+L YN+IL   C+ G  D    I E++ +    P+  + + +F    + G
Sbjct: 384 SGGHLPDILSYNSILASLCKNGNADEALNIFEKLGEVGCPPNAGSYNTLFGALWSSG 440



 Score = 53.5 bits (127), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/173 (21%), Positives = 68/173 (39%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TYN ++ +         A+ +  Q+      P   TY I+I+          A  L+  M
Sbjct: 183 TYNILIGNFCGRGRLDLALRVMDQLLKDNCKPTVITYTILIEATITQGGIDEAMKLLDEM 242

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           +  G  P   TY  ++  +   G  D A   L  +S  G    V  YN +L+    +G+ 
Sbjct: 243 LSRGLRPDRYTYNVVVNGMCKEGMLDRAFEFLSRISKNGCVAGVSTYNILLRDLLNEGKW 302

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEE 683
           +  E ++  M     +P+P T   + +     G  + A   L+V+  + L  +
Sbjct: 303 EYGEKLMSDMLVKGCEPNPITYSTLITALCRDGKIDEAKNVLKVMKEKALAPD 355



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 76/172 (44%), Gaps = 1/172 (0%)

Query: 515 VLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDG 574
           ++      ++  +A+++ + ++  G  P+   YN +I           AS ++  M + G
Sbjct: 118 LIKGFFNMKKIEKAIQVMEILEKHG-KPDVFAYNAVISGFCKADRVDHASKVLDRMKKRG 176

Query: 575 FYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIE 634
           F P  +TY  LI      G  D AL ++D +  +     V+ Y  +++    +G ID   
Sbjct: 177 FEPDVVTYNILIGNFCGRGRLDLALRVMDQLLKDNCKPTVITYTILIEATITQGGIDEAM 236

Query: 635 FIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
            ++++M    ++PD  T + V +G    G  + A E L  +S       VST
Sbjct: 237 KLLDEMLSRGLRPDRYTYNVVVNGMCKEGMLDRAFEFLSRISKNGCVAGVST 288


>gi|326501502|dbj|BAK02540.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 673

 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 98/421 (23%), Positives = 165/421 (39%), Gaps = 66/421 (15%)

Query: 270 GRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSH 329
           G LR SRL+   PL            FSD+I A  R      A +L+   Q++GL P S+
Sbjct: 222 GDLRDSRLEPDAPL------------FSDLISAFARAALPDAALELLASAQAIGLTPRSN 269

Query: 330 T------------------------------------YDGFIRAIVSDRGLRNGMEVLKI 353
                                                Y+  ++  V    L+N   VL  
Sbjct: 270 AVTALISALGIAGRVPEAEALFLEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEHVLDE 329

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMD 409
           M +  + P ++T + L    ++A   + A  LL ++      KP    FS  LA      
Sbjct: 330 MSECGVAPDEATYSLLVDAYTRAGRWESARILLKEME-ADGVKPSSYVFSRILAGFRDRG 388

Query: 410 KPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
             ++A  +  +M    ++PD   Y ++   FG  N      ++F+++    R   IE D+
Sbjct: 389 DWQKAFAVLREMHASGVQPDRHFYNVMIDTFGKYNCLGHAMDVFNRM----RGEGIEPDV 444

Query: 469 AR-NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHR 527
              N +  +H          G      EL +   +S  P GT TYN +++ L E +    
Sbjct: 445 VTWNTLIDAHCKG-------GRHDCAMELFKEMRESNCPPGTTTYNIMINLLGEQERWVG 497

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
              +  +MK  G+ PN  TY  ++D       +K A   +  M  DG  P    Y AL+ 
Sbjct: 498 VETMMSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVN 557

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
                G  D ALN++  +  +G+    ++ N+++    E  R+     +++ M +N  +P
Sbjct: 558 AYAQRGLADHALNVVKAMRADGLEASTVVLNSLINAFGEDRRVVEAFSVLQFMKENDFRP 617

Query: 648 D 648
           D
Sbjct: 618 D 618


>gi|15237662|ref|NP_201237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171655|sp|Q9FMF6.1|PP444_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g64320, mitochondrial; Flags: Precursor
 gi|9759408|dbj|BAB09863.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010486|gb|AED97869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 730

 Score = 96.3 bits (238), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 103/467 (22%), Positives = 185/467 (39%), Gaps = 32/467 (6%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           +  +IH+  +      A QL+ +M  +G  P + T++  I  +     +    +++  M 
Sbjct: 255 YQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRML 314

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDKP 411
                P D T   L     K   +D A+ L  +I     PKP    F+  +    T  + 
Sbjct: 315 IRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRI-----PKPEIVIFNTLIHGFVTHGRL 369

Query: 412 ERAIKIFAKM--RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
           + A  + + M     + PD+ TY  L      +   ++EG +   ++       +  DM 
Sbjct: 370 DDAKAVLSDMVTSYGIVPDVCTYNSL------IYGYWKEGLVGLALE-------VLHDMR 416

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRE----LIQYFCDSKTPLGTPTYNTVLHSLVEAQES 525
               + +  S   L+      G I E    L +   D   P  T  +N ++ +  +    
Sbjct: 417 NKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKP-NTVGFNCLISAFCKEHRI 475

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
             A+EIF++M   G  P+  T+N +I     +   K A  L+  M+ +G    T+TY  L
Sbjct: 476 PEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTL 535

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           I   L  G+  EA  L++ +  +G P D + YN+++K  C  G +D    + E+M ++  
Sbjct: 536 INAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGH 595

Query: 646 QPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDFEDLILAEDSEA 705
            P   +C+ + +G    G    A+E  + + +R    ++ T     +        ED   
Sbjct: 596 APSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLT 655

Query: 706 ESRILQFCEDSNENLAFTAALLQLRWCTIVGFPISWSLDRASGLEDS 752
             R LQ      + + F      + W    GF     L    G+ED 
Sbjct: 656 MFRKLQAEGIPPDTVTFNTL---MSWLCKGGFVYDACLLLDEGIEDG 699



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 66/286 (23%), Positives = 127/286 (44%), Gaps = 20/286 (6%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A  ++ +M + GL+P++  ++  I A   +  +   +E+ + M +   KP   T  +L  
Sbjct: 443 AYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLIS 502

Query: 372 ECSKALELDLAEALL-DQISR--CTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRP- 427
              +  E+  A  LL D IS     N   ++  + A     + + A K+  +M  +  P 
Sbjct: 503 GLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPL 562

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL 487
           D  TY  L    G   A         +VD A+   ++   M R+    S+IS   L+  L
Sbjct: 563 DEITYNSLIK--GLCRA--------GEVDKAR---SLFEKMLRDGHAPSNISCNILINGL 609

Query: 488 GAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNA 544
              GM+ E +++  +      TP   T+N++++ L  A      + +F++++  GIPP+ 
Sbjct: 610 CRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDT 669

Query: 545 ATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590
            T+N ++           A  L+   + DGF P   T++ L++ ++
Sbjct: 670 VTFNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNHRTWSILLQSII 715



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 72/160 (45%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           +YN VL  LV       A  +F  M +  IPP   T+ +++     +    SA +L+  M
Sbjct: 184 SYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDM 243

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
            + G  P ++ Y  LI  L      +EAL LL+ + L G   D   +N ++   C+  RI
Sbjct: 244 TKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRI 303

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAME 670
           +    ++ +M      PD  T  ++ +G    G  ++A +
Sbjct: 304 NEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKD 343



 Score = 49.3 bits (116), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 68/171 (39%), Gaps = 8/171 (4%)

Query: 504 KTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSA 563
           K P    T+  V+ +     E   A+ + + M   G  PN+  Y  +I   S       A
Sbjct: 212 KIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEA 271

Query: 564 SALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKK 623
             L+  M   G  P   T+  +I  L  +   +EA  +++ + + G   D + Y  ++  
Sbjct: 272 LQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNG 331

Query: 624 ACEKGRIDVIEFIIEQMHQNKVQPDPSTCHF--VFSGYVNCGFHNSAMEAL 672
            C+ GR+D  + +  ++      P P    F  +  G+V  G  + A   L
Sbjct: 332 LCKIGRVDAAKDLFYRI------PKPEIVIFNTLIHGFVTHGRLDDAKAVL 376



 Score = 43.5 bits (101), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 41/196 (20%), Positives = 84/196 (42%), Gaps = 8/196 (4%)

Query: 469 ARNNIQHSHISMKNLLKALGAEG---MIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQ-- 523
           ++N  +HS    + L+  LGA G    I  L+    D         + +++    +A   
Sbjct: 103 SQNGYRHSFDVYQVLIGKLGANGEFKTIDRLLIQMKDEGIVFKESLFISIMRDYDKAGFP 162

Query: 524 -ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTY 582
            ++ R M   + + +C   P   +YN++++      C K A+ +   M+     P   T+
Sbjct: 163 GQTTRLMLEMRNVYSC--EPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTF 220

Query: 583 TALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642
             ++K      + D AL+LL  ++  G   + ++Y T++    +  R++    ++E+M  
Sbjct: 221 GVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFL 280

Query: 643 NKVQPDPSTCHFVFSG 658
               PD  T + V  G
Sbjct: 281 MGCVPDAETFNDVILG 296


>gi|359481971|ref|XP_003632699.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Vitis vinifera]
          Length = 819

 Score = 96.3 bits (238), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 121/573 (21%), Positives = 233/573 (40%), Gaps = 44/573 (7%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y   +QA  K G L+ A  L+  + +R G+ P + VYN  +G   K   M  A    D M
Sbjct: 185 YGKAIQAAVKLGDLKRAIELMTCM-KRGGVSPGVFVYNVVIGGLCKEKRMKDAEKLFDEM 243

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDY-IKHYSLSIFSLRKFVWSFTRLRDL 243
             R V  N +TY  L+        L     I E   +++   +I +    +    R + +
Sbjct: 244 LDRRVAPNRITYNTLIDGYCKVGQLEEAFNIRERMKVENVEPTIITFNSLLNGLCRAQMM 303

Query: 244 KSAYETLQHMVALAMMGKLYINRT-SEGRLRSSRLDIPIPLNALPVMK---VLRWSFSDV 299
           + A   L+ M     +   +   T  +G L+   +D  I L+   V K   +L ++ S +
Sbjct: 304 EEAQRVLEEMEVYGFVPDRFTYTTLFDGHLKCGNVDASITLSEEAVRKGVQILDYTCSIL 363

Query: 300 IHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNL 359
           ++A  +  N   AE+++ +    GL P    ++  +        +      ++ M+   L
Sbjct: 364 LNALCKEGNMEKAEEVLKKFLENGLAPVGVFFNTIVNGYCQVGDINKAYTTIEKMEAVGL 423

Query: 360 KPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKPERAIK 416
           +P   T  +L  +  +   ++ AE  + ++       N + ++  +         +R  +
Sbjct: 424 RPNHVTYNSLVKKFCEMKNMEEAEKCIKKMVEKGVLPNVETYNTLIDGYGRSCLFDRCFQ 483

Query: 417 IFAKMRQK-LRPDIRTYELLFS-LFGNVNAPYEE---GNMFSQ------------VD--- 456
           I  +M +K L+P++ +Y  L + L  + N    E   G+M  +            +D   
Sbjct: 484 ILEEMEKKGLKPNVISYGCLINCLCKDANILEAEVILGDMVHRGVVPNAQIYNMLIDGSC 543

Query: 457 -SAKRINAIEM--DMARNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTP 510
            + K  +A     +M    I  + ++   L+  L  +G + E   L              
Sbjct: 544 IAGKLKDAFRFFDEMVAREIVPTLVTYNILINGLCKKGKVMEAENLASEITRKGLSFDVI 603

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSM- 569
           TYN+++     A    +A+E+++ MK  GI P   TY+ +I  C      K    LV   
Sbjct: 604 TYNSLISGYSSAGNVQKALELYETMKKSGIKPTLNTYHRLIAGCG-----KEGLVLVEKI 658

Query: 570 ---MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE 626
              M++    P  + Y ALI   +++GD  +A +L   +  +GI  D + YN ++    +
Sbjct: 659 YQEMLQMNLVPDRVIYNALIHCYVEHGDVQKACSLHSAMEAQGIQPDKMTYNCLILGHFK 718

Query: 627 KGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
           +GR+  ++ ++  M    + P   T   +  G+
Sbjct: 719 EGRMHKVKNLVNDMKIRGLIPKTETYDILIVGH 751



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 121/568 (21%), Positives = 231/568 (40%), Gaps = 47/568 (8%)

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERY---GIYPILPVYNSFLGACA 169
           M ++ +  N   Y  ++   CK G LEEA N+     ER     + P +  +NS L    
Sbjct: 243 MLDRRVAPNRITYNTLIDGYCKVGQLEEAFNI----RERMKVENVEPTIITFNSLLNGLC 298

Query: 170 KLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYSLSIF 228
           +   M  A   L+ M+      +  TYT L    +   N+ A   + E+ + K   +  +
Sbjct: 299 RAQMMEEAQRVLEEMEVYGFVPDRFTYTTLFDGHLKCGNVDASITLSEEAVRKGVQILDY 358

Query: 229 SLRKFVWSFTRLRDLKSAYETLQHMV--ALAMMGKLYINRTSEGRLRSSRLDIPIPLNAL 286
           +    + +  +  +++ A E L+  +   LA +G ++ N    G  +    DI      +
Sbjct: 359 TCSILLNALCKEGNMEKAEEVLKKFLENGLAPVG-VFFNTIVNGYCQVG--DINKAYTTI 415

Query: 287 PVMKVL-----RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTY----DGFIRA 337
             M+ +       +++ ++      +N   AE+ + +M   G+ P+  TY    DG+ R+
Sbjct: 416 EKMEAVGLRPNHVTYNSLVKKFCEMKNMEEAEKCIKKMVEKGVLPNVETYNTLIDGYGRS 475

Query: 338 IVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL-SVECSKALELDLAEALLDQISRCTNPK 396
            + DR      ++L+ M++  LKP   +   L +  C  A  L+    L D + R   P 
Sbjct: 476 CLFDRCF----QILEEMEKKGLKPNVISYGCLINCLCKDANILEAEVILGDMVHRGVVPN 531

Query: 397 P--FSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFS 453
              ++  +       K + A + F +M  +++ P + TY +L +         E  N+ S
Sbjct: 532 AQIYNMLIDGSCIAGKLKDAFRFFDEMVAREIVPTLVTYNILINGLCKKGKVMEAENLAS 591

Query: 454 QVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYN 513
           ++              R  +    I+  +L+    + G +++ ++ +   K     PT N
Sbjct: 592 EI-------------TRKGLSFDVITYNSLISGYSSAGNVQKALELYETMKKSGIKPTLN 638

Query: 514 TVLHSLVEA--QESHRAME-IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           T  H L+    +E    +E I+++M    + P+   YN +I C       + A +L S M
Sbjct: 639 T-YHRLIAGCGKEGLVLVEKIYQEMLQMNLVPDRVIYNALIHCYVEHGDVQKACSLHSAM 697

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
              G  P  MTY  LI      G   +  NL++ + + G+      Y+ ++   C+    
Sbjct: 698 EAQGIQPDKMTYNCLILGHFKEGRMHKVKNLVNDMKIRGLIPKTETYDILIVGHCKLKDF 757

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
           D       +M +N   P  S C  + +G
Sbjct: 758 DGAYVWYREMFENGFTPSVSICDNLITG 785



 Score = 69.7 bits (169), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 54/235 (22%), Positives = 101/235 (42%), Gaps = 6/235 (2%)

Query: 435 LFSLFGNVNAPYEEGNMFSQVDSAKRINA---IEMDMARNNIQHSHISMKNLLKALGAEG 491
           LFSL      P     + S    +K ++    + M M ++ +  S  S+   L++L +  
Sbjct: 102 LFSLSSTPMKPLFSDMLLSICSESKMVSESAELYMLMKKDGVLPSVASLNLFLESLVSTK 161

Query: 492 MIRELIQYFCDSKTPLGTPT---YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYN 548
              + +Q F +       P    Y   + + V+  +  RA+E+   MK  G+ P    YN
Sbjct: 162 RYEDTLQLFSEIVESGLRPDQFMYGKAIQAAVKLGDLKRAIELMTCMKRGGVSPGVFVYN 221

Query: 549 IMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLE 608
           ++I      +  K A  L   M+     P  +TY  LI      G  +EA N+ + + +E
Sbjct: 222 VVIGGLCKEKRMKDAEKLFDEMLDRRVAPNRITYNTLIDGYCKVGQLEEAFNIRERMKVE 281

Query: 609 GIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
            +   ++ +N++L   C    ++  + ++E+M      PD  T   +F G++ CG
Sbjct: 282 NVEPTIITFNSLLNGLCRAQMMEEAQRVLEEMEVYGFVPDRFTYTTLFDGHLKCG 336



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/207 (22%), Positives = 87/207 (42%), Gaps = 17/207 (8%)

Query: 474 QHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLV------------- 520
           +H H+     L   G     R LI+     K+P  +P++   L SL              
Sbjct: 60  RHEHVQKLQTLLQQGRTETARRLIRSMLLPKSPFSSPSHLYTLFSLSSTPMKPLFSDMLL 119

Query: 521 ----EAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFY 576
               E++    + E++  MK  G+ P+ A+ N+ ++     + ++    L S +V  G  
Sbjct: 120 SICSESKMVSESAELYMLMKKDGVLPSVASLNLFLESLVSTKRYEDTLQLFSEIVESGLR 179

Query: 577 PQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFI 636
           P    Y   I+  +  GD   A+ L+  +   G+   V +YN ++   C++ R+   E +
Sbjct: 180 PDQFMYGKAIQAAVKLGDLKRAIELMTCMKRGGVSPGVFVYNVVIGGLCKEKRMKDAEKL 239

Query: 637 IEQMHQNKVQPDPSTCHFVFSGYVNCG 663
            ++M   +V P+  T + +  GY   G
Sbjct: 240 FDEMLDRRVAPNRITYNTLIDGYCKVG 266



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 95/454 (20%), Positives = 175/454 (38%), Gaps = 78/454 (17%)

Query: 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
           ++ +   I A  +  +   A +LM  M+  G+ P    Y+  I  +  ++ +++  ++  
Sbjct: 182 QFMYGKAIQAAVKLGDLKRAIELMTCMKRGGVSPGVFVYNVVIGGLCKEKRMKDAEKLFD 241

Query: 353 IMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTM 408
            M    + P   T  TL     K  +L+ A  + +++ +  N +P    F++ L      
Sbjct: 242 EMLDRRVAPNRITYNTLIDGYCKVGQLEEAFNIRERM-KVENVEPTIITFNSLLNGLCRA 300

Query: 409 DKPERAIKIFAKMR-QKLRPDIRTYELLFSLF---GNV---------------------- 442
              E A ++  +M      PD  TY  LF      GNV                      
Sbjct: 301 QMMEEAQRVLEEMEVYGFVPDRFTYTTLFDGHLKCGNVDASITLSEEAVRKGVQILDYTC 360

Query: 443 ----NAPYEEGNM----------------------------FSQV-DSAKRINAIEMDMA 469
               NA  +EGNM                            + QV D  K    IE  M 
Sbjct: 361 SILLNALCKEGNMEKAEEVLKKFLENGLAPVGVFFNTIVNGYCQVGDINKAYTTIE-KME 419

Query: 470 RNNIQHSHISMKNLLKAL-------GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEA 522
              ++ +H++  +L+K          AE  I+++++       P    TYNT++     +
Sbjct: 420 AVGLRPNHVTYNSLVKKFCEMKNMEEAEKCIKKMVE---KGVLP-NVETYNTLIDGYGRS 475

Query: 523 QESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTY 582
               R  +I ++M+  G+ PN  +Y  +I+C         A  ++  MV  G  P    Y
Sbjct: 476 CLFDRCFQILEEMEKKGLKPNVISYGCLINCLCKDANILEAEVILGDMVHRGVVPNAQIY 535

Query: 583 TALIKILLDYGDFDEALNLLD-LVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMH 641
             LI      G   +A    D +V+ E +P  ++ YN ++   C+KG++   E +  ++ 
Sbjct: 536 NMLIDGSCIAGKLKDAFRFFDEMVAREIVP-TLVTYNILINGLCKKGKVMEAENLASEIT 594

Query: 642 QNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
           +  +  D  T + + SGY + G    A+E  + +
Sbjct: 595 RKGLSFDVITYNSLISGYSSAGNVQKALELYETM 628



 Score = 55.8 bits (133), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 59/287 (20%), Positives = 124/287 (43%), Gaps = 24/287 (8%)

Query: 401 FLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAK 459
           FL +  +  + E  +++F+++ +  LRPD       F     + A  + G++       K
Sbjct: 153 FLESLVSTKRYEDTLQLFSEIVESGLRPD------QFMYGKAIQAAVKLGDL-------K 199

Query: 460 RINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYF---CDSKTPLGTPTYNTVL 516
           R   +   M R  +         ++  L  E  +++  + F    D +      TYNT++
Sbjct: 200 RAIELMTCMKRGGVSPGVFVYNVVIGGLCKEKRMKDAEKLFDEMLDRRVAPNRITYNTLI 259

Query: 517 HSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFY 576
               +  +   A  I ++MK   + P   T+N +++     +  + A  ++  M   GF 
Sbjct: 260 DGYCKVGQLEEAFNIRERMKVENVEPTIITFNSLLNGLCRAQMMEEAQRVLEEMEVYGFV 319

Query: 577 PQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLY--NTILKKACEKGRIDVIE 634
           P   TYT L    L  G+ D ++ L +    +G+   +L Y  + +L   C++G ++  E
Sbjct: 320 PDRFTYTTLFDGHLKCGNVDASITLSEEAVRKGV--QILDYTCSILLNALCKEGNMEKAE 377

Query: 635 FIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSA---MEALQVLSMR 678
            ++++  +N + P     + + +GY   G  N A   +E ++ + +R
Sbjct: 378 EVLKKFLENGLAPVGVFFNTIVNGYCQVGDINKAYTTIEKMEAVGLR 424



 Score = 54.3 bits (129), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 69/372 (18%), Positives = 156/372 (41%), Gaps = 21/372 (5%)

Query: 296 FSDVIHA-CGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           FSD++ + C  ++    + +L + M+  G+ PS  + + F+ ++VS +   + +++   +
Sbjct: 114 FSDMLLSICSESKMVSESAELYMLMKKDGVLPSVASLNLFLESLVSTKRYEDTLQLFSEI 173

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPER- 413
            ++ L+P             K  +L  A  L+  + R         +      + K +R 
Sbjct: 174 VESGLRPDQFMYGKAIQAAVKLGDLKRAIELMTCMKRGGVSPGVFVYNVVIGGLCKEKRM 233

Query: 414 --AIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
             A K+F +M  +++ P+  TY  L   +  V    E  N             I   M  
Sbjct: 234 KDAEKLFDEMLDRRVAPNRITYNTLIDGYCKVGQLEEAFN-------------IRERMKV 280

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHR 527
            N++ + I+  +LL  L    M+ E  +   + +     P   TY T+    ++      
Sbjct: 281 ENVEPTIITFNSLLNGLCRAQMMEEAQRVLEEMEVYGFVPDRFTYTTLFDGHLKCGNVDA 340

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           ++ + ++    G+     T +I+++        + A  ++   + +G  P  + +  ++ 
Sbjct: 341 SITLSEEAVRKGVQILDYTCSILLNALCKEGNMEKAEEVLKKFLENGLAPVGVFFNTIVN 400

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
                GD ++A   ++ +   G+  + + YN+++KK CE   ++  E  I++M +  V P
Sbjct: 401 GYCQVGDINKAYTTIEKMEAVGLRPNHVTYNSLVKKFCEMKNMEEAEKCIKKMVEKGVLP 460

Query: 648 DPSTCHFVFSGY 659
           +  T + +  GY
Sbjct: 461 NVETYNTLIDGY 472



 Score = 49.3 bits (116), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 37/163 (22%), Positives = 67/163 (41%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           + N  L SLV  +     +++F ++   G+ P+   Y   I     +   K A  L++ M
Sbjct: 149 SLNLFLESLVSTKRYEDTLQLFSEIVESGLRPDQFMYGKAIQAAVKLGDLKRAIELMTCM 208

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
            R G  P    Y  +I  L       +A  L D +    +  + + YNT++   C+ G++
Sbjct: 209 KRGGVSPGVFVYNVVIGGLCKEKRMKDAEKLFDEMLDRRVAPNRITYNTLIDGYCKVGQL 268

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           +    I E+M    V+P   T + + +G         A   L+
Sbjct: 269 EEAFNIRERMKVENVEPTIITFNSLLNGLCRAQMMEEAQRVLE 311


>gi|302769173|ref|XP_002968006.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
 gi|300164744|gb|EFJ31353.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
          Length = 737

 Score = 96.3 bits (238), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 125/591 (21%), Positives = 238/591 (40%), Gaps = 75/591 (12%)

Query: 108 ETWRMMEEKEIGL---NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSF 164
           E + + +    GL   ++  Y  ++   CK    ++A  L+  + E+ GI P   VYN+ 
Sbjct: 150 EAYDLFKNHRCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEM-EKRGIVPHNAVYNTI 208

Query: 165 L-GAC--AKLHS-MVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI 220
           + G C   ++ S +VH     D+   R    + +TYT L+        +S    I ED I
Sbjct: 209 IKGLCDNGRVDSALVHYR---DM--QRNCAPSVITYTILVDALCKSARISDASLILEDMI 263

Query: 221 K-HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDI 279
           +   + ++ +    +  F +L ++  A      M+                   S   D+
Sbjct: 264 EAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLE-----------------NSCSPDV 306

Query: 280 PIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIV 339
                         ++++ +I    + +      +L+ +M   G +P+  TY+  + ++V
Sbjct: 307 --------------FTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLV 352

Query: 340 SDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQIS-RCTNPK-- 396
                 +   + ++M + + KP   T   +     K  +LDLA  L   ++ R   P   
Sbjct: 353 KSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIY 412

Query: 397 PFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQV 455
            ++  ++     ++ + A ++  +M +    PD+ TY  + S  G   A        SQV
Sbjct: 413 TYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVS--GLCKA--------SQV 462

Query: 456 DSAKRINAIEMDMARNNIQHSHISMKNLLKAL-------GAEGMIRELIQYFCDSKTPLG 508
           D A  +  +   +         ++   L+  L        AE ++RE+ +   +   P  
Sbjct: 463 DEAYEVYEV---LRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMER---NGSAP-D 515

Query: 509 TPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID-CCSIIRCFKSASALV 567
              Y  ++H   +A +  +++  F +M   G  P   TY+I+ID  C   R  +    L+
Sbjct: 516 VVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSAR-VRDGCMLL 574

Query: 568 SMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEK 627
             M+  G  P  + YT++I  L     +DEA  L  L+   G    V+ YN ++ K C+ 
Sbjct: 575 KTMLERGVTPDAIVYTSVIDGLCKSDSYDEAYELYKLMKQTGCAPTVVTYNVLVDKLCKV 634

Query: 628 GRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678
            R+D    ++E M  +   PD  T + VF G+     H+ A    Q +  R
Sbjct: 635 SRLDEAIHLLEVMESDGCLPDTVTYNSVFDGFWKSAEHDKAFRLFQAMKSR 685



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 112/547 (20%), Positives = 210/547 (38%), Gaps = 81/547 (14%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y +++ ALCK   + +AS ++  + E  G  P +  YN+ +    KL +M  A +  + M
Sbjct: 239 YTILVDALCKSARISDASLILEDMIEA-GCAPNVVTYNTLINGFCKLGNMDEAVVLFNQM 297

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH--------YSLSIFSL---RKF 233
                  +  TY  L+     Q+      ++ ++ +K+        Y+  + SL    K+
Sbjct: 298 LENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKY 357

Query: 234 VWSFTRL-----RDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPV 288
           + +F        RD K ++ T   M+ +         +  +  L      +      LP 
Sbjct: 358 IDAFNLAQMMLRRDCKPSHFTFNLMIDM-------FCKVGQLDLAYELFQLMTDRGCLPD 410

Query: 289 MKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGM 348
           +    ++++ +I    R      A QL+ +M   G  P   TY+  +  +     +    
Sbjct: 411 I----YTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAY 466

Query: 349 EVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFL----AA 404
           EV ++++         T +TL     K+  LD AE LL ++ R  +     A+       
Sbjct: 467 EVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGF 526

Query: 405 CDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINA 463
           C   D+ ++++  F++M  K   P + TY ++       +A   +G M            
Sbjct: 527 CKA-DQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCK-SARVRDGCM------------ 572

Query: 464 IEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQ 523
                              LLK +   G+  + I              Y +V+  L ++ 
Sbjct: 573 -------------------LLKTMLERGVTPDAI-------------VYTSVIDGLCKSD 600

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMID-CCSIIRCFKSASALVSMMVRDGFYPQTMTY 582
               A E++K MK  G  P   TYN+++D  C + R    A  L+ +M  DG  P T+TY
Sbjct: 601 SYDEAYELYKLMKQTGCAPTVVTYNVLVDKLCKVSR-LDEAIHLLEVMESDGCLPDTVTY 659

Query: 583 TALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642
            ++        + D+A  L   +   G      +Y+ +L K   + ++D    I E+  +
Sbjct: 660 NSVFDGFWKSAEHDKAFRLFQAMKSRGCSPTPFMYSLLLTKLVAEEKMDQAMEIWEEALE 719

Query: 643 NKVQPDP 649
                DP
Sbjct: 720 AGADVDP 726



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 83/365 (22%), Positives = 144/365 (39%), Gaps = 31/365 (8%)

Query: 323 GLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLA 382
           G + S  T +  + A V  +  +   ++ K  +     P   T +TL     KA +   A
Sbjct: 127 GYKHSKFTCNCLLSAFVRKKKAQEAYDLFKNHRCGLCSPDSITYSTLINGFCKARDFQQA 186

Query: 383 EALLDQISRCTNPKPFSAFL-----AACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFS 437
             LLD++ +     P +A         CD   + + A+  +  M++   P + TY +L  
Sbjct: 187 YRLLDEMEK-RGIVPHNAVYNTIIKGLCDN-GRVDSALVHYRDMQRNCAPSVITYTILVD 244

Query: 438 LFGNVNAPYEEGNMFSQVDSAKRINA--IEMDMARNNIQHSHISMKNLLKALGAEGMIRE 495
                              SA+  +A  I  DM       + ++   L+      G + E
Sbjct: 245 AL---------------CKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDE 289

Query: 496 LIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID 552
            +  F        +P   TYN ++    + +      ++ ++M   G  PN  TYN ++D
Sbjct: 290 AVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMD 349

Query: 553 CCSIIRCFKSASA--LVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGI 610
             S+++  K   A  L  MM+R    P   T+  +I +    G  D A  L  L++  G 
Sbjct: 350 --SLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGC 407

Query: 611 PHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAME 670
             D+  YN ++  AC   RID    ++E+M +    PD  T + + SG       + A E
Sbjct: 408 LPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYE 467

Query: 671 ALQVL 675
             +VL
Sbjct: 468 VYEVL 472



 Score = 40.8 bits (94), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 68/164 (41%), Gaps = 2/164 (1%)

Query: 59  IVDALCRGERSRASHLLL-NLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKE 117
           ++D LC+  R R   +LL  +     +  A  +  +++   +S       E +++M++  
Sbjct: 557 VIDKLCKSARVRDGCMLLKTMLERGVTPDAIVYTSVIDGLCKSDSYDEAYELYKLMKQTG 616

Query: 118 IGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHA 177
                  Y +++  LCK   L+EA +L+  + E  G  P    YNS      K      A
Sbjct: 617 CAPTVVTYNVLVDKLCKVSRLDEAIHLLEVM-ESDGCLPDTVTYNSVFDGFWKSAEHDKA 675

Query: 178 NLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK 221
                 M SR        Y+ LL   V ++ +    EIWE+ ++
Sbjct: 676 FRLFQAMKSRGCSPTPFMYSLLLTKLVAEEKMDQAMEIWEEALE 719


>gi|302780485|ref|XP_002972017.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
 gi|300160316|gb|EFJ26934.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
          Length = 1116

 Score = 96.3 bits (238), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 128/564 (22%), Positives = 225/564 (39%), Gaps = 109/564 (19%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGE--RYGIYPILPVYNSFLGACAKLHSMVHANLCLD 182
           Y +++Q+LC+ G  E A  L  F GE  R G+ P +  YN+ +    K            
Sbjct: 183 YNIVLQSLCRAG--ETARALEIFRGEMARDGVAPTIVTYNTIINGLCK------------ 228

Query: 183 LMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYSLSIFSLRKFVWSFTRLR 241
                    NE               L A  E++E+ + + +   + +    + S  +  
Sbjct: 229 --------SNE---------------LGAGMELFEELVERGHHPDVVTYNTLIDSLCKAG 265

Query: 242 DLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIH 301
           DL+ A      M                    SSR  +P   N +        ++S +I+
Sbjct: 266 DLEEARRLHGDM--------------------SSRSCVP---NVV--------TYSVLIN 294

Query: 302 ACGRTQNSGLAEQLMLQM--QSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNL 359
              +      A +L+ +M  +S  + P+  TY+ F+  +          E+++ ++  +L
Sbjct: 295 GLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSL 354

Query: 360 K--PQDSTIATLSVECSKALELDLAEALLDQI---SRCTNPKPFSAFLAACDTMDKPERA 414
           +  P   T +TL     K  ++D A ++ D +       N   ++A +      DK ERA
Sbjct: 355 RVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERA 414

Query: 415 IKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMF----------------SQVD- 456
             +   M  K + PD+ TY +L   F   +   E   +                 S +D 
Sbjct: 415 HAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDG 474

Query: 457 ---SAKRINAIEM--DMA-RNNIQHSHISMKNLLKAL---GAEGMIRELIQYFCDSKTPL 507
              S +   A +M  DMA ++ +    I+   L+  L   G  G    L+    D     
Sbjct: 475 LCKSDRSGEAFQMFDDMALKHGLVPDKITYCTLIDGLFRTGRAGQAEALLDAMPDPD--- 531

Query: 508 GTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALV 567
            T  +N  ++ L +  +  RA++++ +M    + P+  T+NI+I        F+ ASAL 
Sbjct: 532 -TYAFNCCINGLSKLGDVSRALQVYNRMLELELVPDKVTFNILIAGACKAGNFEQASALF 590

Query: 568 SMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEK 627
             MV     P  MT+ ALI  L   G  + A ++LDL+   G+P +V+ YN ++   C+ 
Sbjct: 591 EEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKS 650

Query: 628 GRIDVIEFIIEQMHQNKVQPDPST 651
           GRI+     +E+M  +   PD  T
Sbjct: 651 GRIEEACQFLEEMVSSGCVPDSIT 674



 Score = 93.2 bits (230), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 138/698 (19%), Positives = 277/698 (39%), Gaps = 58/698 (8%)

Query: 15   DSFCKSKFHKHERRNVANKLELSRTL-TTTMGLNEESISKATQMQIVDALCR-GERSRAS 72
            D  CK           A   EL R+L   ++ ++ ++++ +T   ++D LC+ G+   A 
Sbjct: 331  DGLCKQSM-------TAEACELMRSLRDGSLRVSPDTVTFST---LIDGLCKCGQIDEAC 380

Query: 73   HLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQAL 132
             +  ++    +      +  ++N   ++            M +K +  +   Y +++ A 
Sbjct: 381  SVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAF 440

Query: 133  CKGGYLEEASNLIYFLGERYGIYPILPVYNSFL-GACAKLHSMVHANLCLDLMDSRMVGK 191
            CK   ++EA  L++ +  R G  P +  +NS + G C    S     +  D+     +  
Sbjct: 441  CKASRVDEALELLHGMASR-GCTPNVVTFNSIIDGLCKSDRSGEAFQMFDDMALKHGLVP 499

Query: 192  NEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQ 251
            +++TY  L+   +++   +   E   D +       F+    +   ++L D+  A +   
Sbjct: 500  DKITYCTLID-GLFRTGRAGQAEALLDAMPDPDTYAFNC--CINGLSKLGDVSRALQVYN 556

Query: 252  HMVALAMM-GKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLR---WSFSDVIHACGRTQ 307
             M+ L ++  K+  N    G  ++   +    L    V K L+    +F  +I    +  
Sbjct: 557  RMLELELVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAG 616

Query: 308  NSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIA 367
                A  ++  M +LG+ P+  TY+  +  +     +    + L+ M  +   P   T  
Sbjct: 617  QVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYG 676

Query: 368  TLSVECSKALELDLAEALLDQI-SRCTNPKP--FSAFLAACDTMDKPERAIKIFAKMRQK 424
            +L     +A   D A  L+ ++ S   +P    ++  +       + E+AI +  +M  K
Sbjct: 677  SLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGQTEQAITVLEEMVGK 736

Query: 425  LR-PDIRTYELLFSLFGNVNAPYE----EGNMFSQVDSAKRINAI-------------EM 466
               PD+ TY  L           E     G+M S+V      N +              +
Sbjct: 737  GHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRVSRCCVPNVVTYSVLINGLCKVGRI 796

Query: 467  DMARNNIQH----------SHISMKNLLKALGAEGMIRE---LIQYFCDS--KTPLGTPT 511
            D AR  IQ           + I+  + L  L  + M+ E   L++   D   +    T T
Sbjct: 797  DEARELIQEMMRKSCDVLPNIITYNSFLDGLCKQSMMAEACELMRSLRDGSLRVSPDTVT 856

Query: 512  YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
            ++T++  L +  ++  A  +F  M   G  PN  TYN++++        + A A++  MV
Sbjct: 857  FSTLIDGLCKCGQTDEACNVFDDMIAGGYVPNVVTYNVLMNGLCKTDKMERAHAMIESMV 916

Query: 572  RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI- 630
              G  P  +TY+ L+         DEAL LL  ++  G   +V+ +N+I+   C+  +  
Sbjct: 917  DKGVTPDVITYSVLVDAFCKASHVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDQSG 976

Query: 631  DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSA 668
            +  +   +   ++ + PD  T   +  G    G+   A
Sbjct: 977  EAFQMFDDMTLKHGLAPDKITYCTLIDGLFRTGWAGQA 1014



 Score = 75.9 bits (185), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 150/709 (21%), Positives = 269/709 (37%), Gaps = 124/709 (17%)

Query: 10   FQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERS 69
            F  I D  CKS     +R   A   ++   +    GL  + I+  T   ++D L R  R+
Sbjct: 468  FNSIIDGLCKS-----DRSGEA--FQMFDDMALKHGLVPDKITYCT---LIDGLFRTGRA 517

Query: 70   RASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMM 129
              +  LL+   A        F   +N  ++  D    ++ +  M E E+  +   + +++
Sbjct: 518  GQAEALLD---AMPDPDTYAFNCCINGLSKLGDVSRALQVYNRMLELELVPDKVTFNILI 574

Query: 130  QALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMV 189
               CK G  E+AS L   +  +  + P +  + + +    K   +  A   LDLM +  V
Sbjct: 575  AGACKAGNFEQASALFEEMVAK-NLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGV 633

Query: 190  GKNEVTYTELLKLAVWQKNLSAVHEIWE---------DYIKHYSLS-------------- 226
              N VTY  L+        +    +  E         D I + SL               
Sbjct: 634  PPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQ 693

Query: 227  -IFSLRKFVW-----SFTRLRD-LKSAYETLQHMVALA-MMGK-----------LYINRT 267
             +  L+ F W     ++  L D L  + +T Q +  L  M+GK           L  +  
Sbjct: 694  LVSELKSFGWDPDTVTYNILVDGLWKSGQTEQAITVLEEMVGKGHHPDVVTYNTLIDSLC 753

Query: 268  SEGRLRSSRL---DIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQM--QSL 322
              G L  +R    D+   ++   V  V+ +S   +I+   +      A +L+ +M  +S 
Sbjct: 754  KAGDLEEARRLHGDMSSRVSRCCVPNVVTYSV--LINGLCKVGRIDEARELIQEMMRKSC 811

Query: 323  GLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLK--PQDSTIATLSVECSKALELD 380
             + P+  TY+ F+  +     +    E+++ ++  +L+  P   T +TL     K  + D
Sbjct: 812  DVLPNIITYNSFLDGLCKQSMMAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTD 871

Query: 381  LAEALLDQI---SRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLF 436
             A  + D +       N   ++  +      DK ERA  +   M  K + PD+ TY +L 
Sbjct: 872  EACNVFDDMIAGGYVPNVVTYNVLMNGLCKTDKMERAHAMIESMVDKGVTPDVITYSVLV 931

Query: 437  SLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIREL 496
              F             S VD A                        LL  + + G    +
Sbjct: 932  DAFCKA----------SHVDEALE----------------------LLHGMASRGCTPNV 959

Query: 497  IQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMK-TCGIPPNAATYNIMIDCCS 555
            +             T+N+++  L ++ +S  A ++F  M    G+ P+  TY  +ID   
Sbjct: 960  V-------------TFNSIIDGLCKSDQSGEAFQMFDDMTLKHGLAPDKITYCTLID--- 1003

Query: 556  IIRCFKSASALVSMMVRDGFY-PQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDV 614
                F++  A  + ++ D    P T  +   I  L   GD   AL+   ++ LE +P D 
Sbjct: 1004 --GLFRTGWAGQAEVLLDAMPDPDTYAFNCCINGLSKLGDVSRALH--RMLELELVP-DK 1058

Query: 615  LLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
            + +N ++  AC+ G  +    + E+M    +QPD  T   +  G    G
Sbjct: 1059 VTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAG 1107



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 66/296 (22%), Positives = 118/296 (39%), Gaps = 46/296 (15%)

Query: 413 RAIKIFAK--MRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           RA++IF     R  + P I TY  + +     N       +F ++               
Sbjct: 198 RALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEEL--------------- 242

Query: 471 NNIQHSH----ISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQ 523
             ++  H    ++   L+ +L   G + E  +   D  +    P   TY+ +++ L +  
Sbjct: 243 --VERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRSCVPNVVTYSVLINGLCKVG 300

Query: 524 ESHRAMEIFKQM--KTCGIPPNAATYNIMID----------CCSIIRCFKSASALVSMMV 571
               A E+ ++M  K+C + PN  TYN  +D           C ++R  +  S  VS   
Sbjct: 301 RIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVS--- 357

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
                P T+T++ LI  L   G  DEA ++ D +   G   +V+ YN ++   C+  +++
Sbjct: 358 -----PDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKME 412

Query: 632 VIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTL 687
               +IE M    V PD  T   +   +      + A+E L  ++ R     V T 
Sbjct: 413 RAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTF 468



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/243 (22%), Positives = 111/243 (45%), Gaps = 28/243 (11%)

Query: 427 PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKA 486
           PD+ TY  L      +++  + G++    + A+R++    DM+  +   + ++   L+  
Sbjct: 249 PDVVTYNTL------IDSLCKAGDL----EEARRLHG---DMSSRSCVPNVVTYSVLING 295

Query: 487 LGAEGMI---RELIQYF----CDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMK--T 537
           L   G I   RELIQ      CD    +   TYN+ L  L +   +  A E+ + ++  +
Sbjct: 296 LCKVGRIDEARELIQEMTRKSCDVLPNI--ITYNSFLDGLCKQSMTAEACELMRSLRDGS 353

Query: 538 CGIPPNAATYNIMIDCCSIIRC--FKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDF 595
             + P+  T++ +ID   + +C     A ++   M+  G+ P  +TY AL+  L      
Sbjct: 354 LRVSPDTVTFSTLID--GLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKM 411

Query: 596 DEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFV 655
           + A  +++ +  +G+  DV+ Y+ ++   C+  R+D    ++  M      P+  T + +
Sbjct: 412 ERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSI 471

Query: 656 FSG 658
             G
Sbjct: 472 IDG 474


>gi|302809105|ref|XP_002986246.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
 gi|300146105|gb|EFJ12777.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
          Length = 725

 Score = 96.3 bits (238), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 127/591 (21%), Positives = 244/591 (41%), Gaps = 45/591 (7%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y  ++   CK   +E A  L+  +  R G  P +  Y + +    KL  +  A   +D M
Sbjct: 82  YNTVLHGFCKANRVENALWLLEQMVMR-GCPPDVVSYTTVINGLCKLDQVDEACRVMDKM 140

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYSLSIFSLRKFVWSFTRLRDL 243
             R    N +TY  L+       +L    E+      + Y  +  +    +      R L
Sbjct: 141 IQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHGLCSGRKL 200

Query: 244 KSAYETLQHMVALAMMGKLYINRTS--EGRLRSSRLDIPIPLNALPVMKVLR---WSFSD 298
            SA +  + M             ++  +  ++S ++D    L    V K       ++S 
Sbjct: 201 DSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEAMVSKGCSPNVVTYSS 260

Query: 299 VIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNN 358
           ++H   +      A  L+ +M   G  P+  TY+  I        +     +L+ M    
Sbjct: 261 LLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGG 320

Query: 359 LKPQDSTIATL---SVECSKALE-LDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERA 414
            +P   T   L     +C KA + + L E ++++     N   +++ L      D+ ERA
Sbjct: 321 CQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEK-GYVPNLFTYNSLLDMFCKKDEVERA 379

Query: 415 IKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAI--------- 464
            ++ + M QK   P++ +Y  + +        +E   +  Q+ S   +  I         
Sbjct: 380 CQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDA 439

Query: 465 -----EMDMAR---NNIQHSH-----ISMKNLLKAL-------GAEGMIRELIQYFCDSK 504
                 +D+A    N IQ S      ++  +L+  L        AE ++RE+ +    S 
Sbjct: 440 MCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSP 499

Query: 505 TPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSAS 564
             +   TYNTV+  L +++   RA ++F QM + G+ P+  TY+I+I      R    A+
Sbjct: 500 DII---TYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEAN 556

Query: 565 ALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKA 624
            ++ +M+++GF P  +TY  LI      G+ D+AL +L L+  +G   DV+ ++  +   
Sbjct: 557 NVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWL 616

Query: 625 CEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
            ++GR+     ++E M +  + PD  T + +  G+ +      A++  +V+
Sbjct: 617 SKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASRTEDAVDLFEVM 667



 Score = 96.3 bits (238), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 86/357 (24%), Positives = 155/357 (43%), Gaps = 54/357 (15%)

Query: 326 PSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEAL 385
           P S TY+  I  +     L + + +L+ M  N   P   +  T+     KA  ++ A  L
Sbjct: 42  PDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWL 101

Query: 386 LDQ-ISRCTNPK--PFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGN 441
           L+Q + R   P    ++  +     +D+ + A ++  KM Q+  +P++ TY  L   F  
Sbjct: 102 LEQMVMRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCR 161

Query: 442 VNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFC 501
           V      G++   V+  +++   E     N I +++I                       
Sbjct: 162 V------GDLDGAVELVRKMT--ERGYRPNAITYNNI----------------------- 190

Query: 502 DSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCG-IPPNAATYNIMIDCCSIIRCF 560
                         +H L   ++   A+++FK+M+  G  PP+  TY+ ++D  S+++  
Sbjct: 191 --------------MHGLCSGRKLDSALQLFKEMEESGSCPPDVFTYSTIVD--SLVKSG 234

Query: 561 K--SASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYN 618
           K   A  LV  MV  G  P  +TY++L+  L   G  DEA  LL  ++  G   +++ YN
Sbjct: 235 KVDDACRLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYN 294

Query: 619 TILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
           TI+   C+ GRID    ++E+M     QP+  T   +   +  CG    A+  ++V+
Sbjct: 295 TIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVM 351



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 135/646 (20%), Positives = 249/646 (38%), Gaps = 47/646 (7%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y  M+  L K   L++A  L+  + +  G  P +  YN+ L    K + + +A   L+ M
Sbjct: 47  YNTMINGLSKSDRLDDAIRLLEEMVDN-GFAPNVFSYNTVLHGFCKANRVENALWLLEQM 105

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH-YSLSIFSLRKFVWSFTRLRDL 243
             R    + V+YT ++        +     + +  I+     ++ +    V  F R+ DL
Sbjct: 106 VMRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDL 165

Query: 244 KSAYETLQHMVALAMM-GKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLR--------- 293
             A E ++ M         +  N    G     +LD     +AL + K +          
Sbjct: 166 DGAVELVRKMTERGYRPNAITYNNIMHGLCSGRKLD-----SALQLFKEMEESGSCPPDV 220

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           +++S ++ +  ++     A +L+  M S G  P+  TY   +  +     L     +L+ 
Sbjct: 221 FTYSTIVDSLVKSGKVDDACRLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQR 280

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI--SRCT-NPKPFSAFLAACDTMDK 410
           M ++   P   T  T+     K   +D A  LL+++    C  N   ++  L A     K
Sbjct: 281 MTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGK 340

Query: 411 PERAIKIFAKMRQK-LRPDIRTYELLFSLF-------------------GNVNAPYEEGN 450
            E AI +   M +K   P++ TY  L  +F                   G V        
Sbjct: 341 AEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNT 400

Query: 451 MFSQVDSAKRINAIEM---DMARNNIQHSHISMKNLLKALGAE---GMIRELIQYFCDSK 504
           + + +  A +++   +    M  NN     ++   ++ A+       +  EL     +S 
Sbjct: 401 VIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESG 460

Query: 505 TPLGTPTYNTVLHSLVEAQESHRAMEIFKQM-KTCGIPPNAATYNIMIDCCSIIRCFKSA 563
                 TYN+++H L +++   +A  + ++M +  G  P+  TYN +ID     +    A
Sbjct: 461 CTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRA 520

Query: 564 SALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKK 623
             L   M+ DG  P  +TY+ +I  L  +   DEA N+L+L+   G     + Y T++  
Sbjct: 521 YKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDG 580

Query: 624 ACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEE 683
            C+ G +D    I++ +      PD  T           G    A E L+ +    L  +
Sbjct: 581 FCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPD 640

Query: 684 VSTLEEKRSDFEDLILAEDSEAESRILQFCEDSNENLAFTAALLQL 729
             T       F D    ED+     +++ C    +N  +T  +  L
Sbjct: 641 TVTYNTLLKGFCDASRTEDAVDLFEVMRQCGCEPDNATYTTLVGHL 686



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 133/629 (21%), Positives = 232/629 (36%), Gaps = 102/629 (16%)

Query: 10  FQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERS 69
           +  + D FC+         ++   +EL R +T   G    +I   T   I+  LC G + 
Sbjct: 152 YGTLVDGFCRVG-------DLDGAVELVRKMTER-GYRPNAI---TYNNIMHGLCSGRKL 200

Query: 70  RASHLLLNLGHAHHSLGADDFFH--ILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLL 127
            ++  L        S   D F +  I++   +S            M  K    N   Y  
Sbjct: 201 DSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEAMVSKGCSPNVVTYSS 260

Query: 128 MMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSR 187
           ++  LCK G L+EA+ L+  +  R G  P +  YN+ +    KL  +  A   L+ M   
Sbjct: 261 LLHGLCKAGKLDEATALLQRM-TRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDG 319

Query: 188 MVGKNEVTYTELL----KLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDL 243
               N VTYT LL    K    +  +  V  + E   K Y  ++F+    +  F +  ++
Sbjct: 320 GCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVE---KGYVPNLFTYNSLLDMFCKKDEV 376

Query: 244 KSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHAC 303
           + A + L  M+    +  +                                S++ VI   
Sbjct: 377 ERACQLLSSMIQKGCVPNVV-------------------------------SYNTVIAGL 405

Query: 304 GRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQD 363
            +         L+ QM S    P   T++  I A+     +    E+  ++Q++   P  
Sbjct: 406 CKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNL 465

Query: 364 STIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDKPERAIKIFA 419
            T  +L     K+   D AE LL +++R     P    ++  +       + +RA K+F 
Sbjct: 466 VTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFL 525

Query: 420 KM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHI 478
           +M    L PD  TY ++ S                            MD A N ++   +
Sbjct: 526 QMLSDGLAPDDVTYSIVISSLCKWRF---------------------MDEANNVLE---L 561

Query: 479 SMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTC 538
            +KN                         G  TY T++    +     +A+EI + + + 
Sbjct: 562 MLKNGFDP---------------------GAITYGTLIDGFCKTGNLDKALEILQLLLSK 600

Query: 539 GIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEA 598
           G  P+  T++I ID  S     + A  L+  M+R G  P T+TY  L+K   D    ++A
Sbjct: 601 GSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASRTEDA 660

Query: 599 LNLLDLVSLEGIPHDVLLYNTILKKACEK 627
           ++L +++   G   D   Y T++    +K
Sbjct: 661 VDLFEVMRQCGCEPDNATYTTLVGHLVDK 689



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 99/208 (47%), Gaps = 2/208 (0%)

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCD-SKT-PLGTPTYNTVLHSLVEAQES 525
           M R  ++      K++L+ L   G   + + +F + SKT P  + TYNT+++ L ++   
Sbjct: 1   MNRKGLKAHAGVHKSILRGLCDAGQCSDAVLHFREMSKTCPPDSVTYNTMINGLSKSDRL 60

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
             A+ + ++M   G  PN  +YN ++         ++A  L+  MV  G  P  ++YT +
Sbjct: 61  DDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVMRGCPPDVVSYTTV 120

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           I  L      DEA  ++D +   G   +V+ Y T++   C  G +D    ++ +M +   
Sbjct: 121 INGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGY 180

Query: 646 QPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           +P+  T + +  G  +    +SA++  +
Sbjct: 181 RPNAITYNNIMHGLCSGRKLDSALQLFK 208


>gi|15222150|ref|NP_172763.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75200670|sp|Q9SAD9.1|PPR40_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g13040, mitochondrial; Flags: Precursor
 gi|4850387|gb|AAD31057.1|AC007357_6 F3F19.6 [Arabidopsis thaliana]
 gi|332190841|gb|AEE28962.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 517

 Score = 96.3 bits (238), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 86/382 (22%), Positives = 156/382 (40%), Gaps = 35/382 (9%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           W+F+  +    R    G A Q    M   G +P   +Y   I  +     + + +E+   
Sbjct: 115 WAFNVYLDLLCRENKVGFAVQTFFCMVQRGREPDVVSYTILINGLFRAGKVTDAVEIWNA 174

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPK----PFSAFLAACDTMD 409
           M ++ + P +   A L V    A ++DLA  ++ +  +    K     ++A ++      
Sbjct: 175 MIRSGVSPDNKACAALVVGLCHARKVDLAYEMVAEEIKSARVKLSTVVYNALISGFCKAG 234

Query: 410 KPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
           + E+A  + + M +    PD+ TY +L +        Y + NM       KR   +  +M
Sbjct: 235 RIEKAEALKSYMSKIGCEPDLVTYNVLLNY-------YYDNNML------KRAEGVMAEM 281

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLG---TPTYNTVLHSLVEAQES 525
            R+ IQ    S   LLK         +   +      P G     +Y+T++ +   A  +
Sbjct: 282 VRSGIQLDAYSYNQLLKRHCRVSHPDKCYNFMVKEMEPRGFCDVVSYSTLIETFCRASNT 341

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCF------KSASALVSMMVRDGFYPQT 579
            +A  +F++M+  G+  N  TY       S+I+ F        A  L+  M   G  P  
Sbjct: 342 RKAYRLFEEMRQKGMVMNVVTYT------SLIKAFLREGNSSVAKKLLDQMTELGLSPDR 395

Query: 580 MTYTALIKILLDYGDFDEALNLL-DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIE 638
           + YT ++  L   G+ D+A  +  D++  E  P D + YN+++   C  GR+     + E
Sbjct: 396 IFYTTILDHLCKSGNVDKAYGVFNDMIEHEITP-DAISYNSLISGLCRSGRVTEAIKLFE 454

Query: 639 QMHQNKVQPDPSTCHFVFSGYV 660
            M   +  PD  T  F+  G +
Sbjct: 455 DMKGKECCPDELTFKFIIGGLI 476



 Score = 42.0 bits (97), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 85/217 (39%), Gaps = 17/217 (7%)

Query: 480 MKNLLKALGAEGMIRELIQYFCD---SKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMK 536
           + NL+K+    GMI   +Q F +   S   + +  YN  +  LV       A  I+  MK
Sbjct: 16  IANLVKS----GMIDNAVQVFDEMRHSSYRVFSFDYNRFIGVLVRESRFELAEAIYWDMK 71

Query: 537 TCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFD 596
             G      TY+  I     ++ F    AL+S M   GF P    +   + +L       
Sbjct: 72  PMGFSLIPFTYSRFISGLCKVKKFDLIDALLSDMETLGFIPDIWAFNVYLDLLCRENKVG 131

Query: 597 EALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI-DVIEFIIEQMHQNKVQPDPSTCHFV 655
            A+     +   G   DV+ Y  ++      G++ D +E I   M ++ V PD   C  +
Sbjct: 132 FAVQTFFCMVQRGREPDVVSYTILINGLFRAGKVTDAVE-IWNAMIRSGVSPDNKACAAL 190

Query: 656 FSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRS 692
             G      H   ++    L+  M+ EE+ +   K S
Sbjct: 191 VVGLC----HARKVD----LAYEMVAEEIKSARVKLS 219


>gi|358346655|ref|XP_003637381.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503316|gb|AES84519.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1023

 Score = 96.3 bits (238), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 91/358 (25%), Positives = 159/358 (44%), Gaps = 25/358 (6%)

Query: 311 LAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLS 370
           LAE ++ +M+   + P+  T+   I        L   ++VL+ M Q N+ P     A L 
Sbjct: 479 LAELVLQKMEKEHVPPNVITFSSIINGYAKKGMLSKAVDVLREMVQRNVMPNTIVYAILI 538

Query: 371 VECSKALELDLAEALLDQI-SRCTNPKP--FSAFLAACDTMDKPERAIKIFAKMRQK-LR 426
               KA E D+A+    ++ SR        F   L     + + + A  +   M  K + 
Sbjct: 539 DGYFKAGEQDVADDFCKEMKSRRLEESNVIFDILLNNLKRVGRMDEARSLIIDMYSKGID 598

Query: 427 PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKA 486
           PDI  Y  L      ++  ++EGN  + +       +I  +M   NI+   ++   L+K 
Sbjct: 599 PDIVNYASL------IDGYFKEGNQLAAL-------SIVQEMKEKNIRFDVVAYNALIKG 645

Query: 487 LGAEGMIRELIQYFCDSKTPLGTP----TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPP 542
           L   G      +Y C     LG      TYNT++++     ++  A++I  +MK+ GI P
Sbjct: 646 LLRLGKYDP--RYVCSRMIELGLAPDCITYNTIINTYCIKGKTEDALDILNEMKSYGIMP 703

Query: 543 NAATYNIMI-DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNL 601
           NA TYNI+I   C      K+ SAL  M+V + F P  +T+  L+K        D+ L +
Sbjct: 704 NAVTYNILIGGLCKTGAVEKAESALDEMLVME-FVPTPITHKFLVKAYSRSEKADKILQI 762

Query: 602 LDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
            + +   G+   + +YNT++   C  G     + ++++M +  +  D  T + +  GY
Sbjct: 763 HEKLVASGLELSLTVYNTLITVFCRLGMTRKAKVVLDEMVKRGISADLVTYNALIRGY 820



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 81/357 (22%), Positives = 138/357 (38%), Gaps = 42/357 (11%)

Query: 269 EGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSS 328
           E + ++ R D+ +  NAL +  +LR    D  + C R             M  LGL P  
Sbjct: 626 EMKEKNIRFDV-VAYNAL-IKGLLRLGKYDPRYVCSR-------------MIELGLAPDC 670

Query: 329 HTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ 388
            TY+  I          + +++L  M+   + P   T   L     K   ++ AE+ LD+
Sbjct: 671 ITYNTIINTYCIKGKTEDALDILNEMKSYGIMPNAVTYNILIGGLCKTGAVEKAESALDE 730

Query: 389 I---SRCTNPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNA 444
           +        P      + A    +K ++ ++I  K+    L   +  Y  L ++F     
Sbjct: 731 MLVMEFVPTPITHKFLVKAYSRSEKADKILQIHEKLVASGLELSLTVYNTLITVF----- 785

Query: 445 PYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL----GAEGMIRELIQYF 500
                    ++   ++   +  +M +  I    ++   L++        E  ++   Q F
Sbjct: 786 --------CRLGMTRKAKVVLDEMVKRGISADLVTYNALIRGYCTGSHVEKALKTYSQMF 837

Query: 501 CDSKTPLGTPTYNTVLHSLVEA----QESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSI 556
            D   P    TYNT+L  L  A    +      ++  +M   G+ PNAATY+I++     
Sbjct: 838 VDGIAP-NITTYNTLLGGLSNAGLMEEMMEETEKLVSEMNERGLVPNAATYDILVSGYGR 896

Query: 557 IRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL-DLVSLEGIPH 612
           +   K    L   M+  GF P   TY  LI      G   EA  LL DL++   IP+
Sbjct: 897 VGNRKKTIILHIEMITKGFVPTLKTYNVLISDYAKSGKMIEARELLNDLLTKGRIPN 953



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/190 (22%), Positives = 84/190 (44%), Gaps = 11/190 (5%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           +Y T+++SL ++     A  +  QM   GI  +  T   ++D    +   K A  +   +
Sbjct: 393 SYATIINSLFKSGRVMEAFNLQSQMVVRGISFDIVTCTTVMDGLFKVGKTKEAEEVFETI 452

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           ++    P  +TY+AL+      G  + A  +L  +  E +P +V+ +++I+    +KG +
Sbjct: 453 LKLNLAPNCVTYSALLDGYCKLGKMELAELVLQKMEKEHVPPNVITFSSIINGYAKKGML 512

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST--LE 688
                ++ +M Q  V P+      +  GY   G  + A +          C+E+ +  LE
Sbjct: 513 SKAVDVLREMVQRNVMPNTIVYAILIDGYFKAGEQDVADD---------FCKEMKSRRLE 563

Query: 689 EKRSDFEDLI 698
           E    F+ L+
Sbjct: 564 ESNVIFDILL 573



 Score = 49.7 bits (117), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 68/166 (40%), Gaps = 12/166 (7%)

Query: 506 PLGTPTYNTVLHSLVEAQESH----RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFK 561
           P  T  Y +   +L+    +H     A   F  M+  G+ P    +N ++   +      
Sbjct: 52  PTKTHLYVSFFCTLIRLYLTHDRFSTASATFSHMRALGLVPTLPFWNTLLYQFNASGLVS 111

Query: 562 SASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL---DLVSLEGIPHDVLLYN 618
               + S M+  G  P   +   L+  L   GD D AL  L   D+V ++ +      YN
Sbjct: 112 QVKLMYSDMLFCGVVPDVFSVNVLVHSLCKVGDLDLALGYLRNNDVVDIDNVT-----YN 166

Query: 619 TILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGF 664
           T++   C+KG +D    ++ +M +  +  D  TC+ +  GY   G 
Sbjct: 167 TVIWGFCQKGLVDQGFGLLSEMVKRGLCFDSITCNILVKGYCRIGL 212



 Score = 48.5 bits (114), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 71/383 (18%), Positives = 147/383 (38%), Gaps = 38/383 (9%)

Query: 324 LQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAE 383
           LQP+  TY   I A     G+     + K M  N + P   T +++     +  +L  A 
Sbjct: 317 LQPTLVTYTTLIAAYCKFVGVEESHSLYKKMIMNGIMPDVVTCSSILYGFCRHGKLTEAA 376

Query: 384 ALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ----KLRPDIRTYELLFSLF 439
            L  ++          ++    +++ K  R ++ F    Q     +  DI T   +    
Sbjct: 377 VLFREMYEMGLDPNHVSYATIINSLFKSGRVMEAFNLQSQMVVRGISFDIVTCTTVMDGL 436

Query: 440 GNVNAPYEEGNMFSQV----------------DSAKRINAIEM------DMARNNIQHSH 477
             V    E   +F  +                D   ++  +E+       M + ++  + 
Sbjct: 437 FKVGKTKEAEEVFETILKLNLAPNCVTYSALLDGYCKLGKMELAELVLQKMEKEHVPPNV 496

Query: 478 ISMKNLLKALGAEGM-------IRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAME 530
           I+  +++     +GM       +RE++Q          T  Y  ++    +A E   A +
Sbjct: 497 ITFSSIINGYAKKGMLSKAVDVLREMVQ----RNVMPNTIVYAILIDGYFKAGEQDVADD 552

Query: 531 IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590
             K+MK+  +  +   ++I+++    +     A +L+  M   G  P  + Y +LI    
Sbjct: 553 FCKEMKSRRLEESNVIFDILLNNLKRVGRMDEARSLIIDMYSKGIDPDIVNYASLIDGYF 612

Query: 591 DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650
             G+   AL+++  +  + I  DV+ YN ++K     G+ D   ++  +M +  + PD  
Sbjct: 613 KEGNQLAALSIVQEMKEKNIRFDVVAYNALIKGLLRLGKYDP-RYVCSRMIELGLAPDCI 671

Query: 651 TCHFVFSGYVNCGFHNSAMEALQ 673
           T + + + Y   G    A++ L 
Sbjct: 672 TYNTIINTYCIKGKTEDALDILN 694



 Score = 42.4 bits (98), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 56/304 (18%), Positives = 104/304 (34%), Gaps = 92/304 (30%)

Query: 467 DMARNNIQHSHISMKNLLKALGAEGMIR---ELIQYFCDSKTPLGTPTYNTVLHSLVEAQ 523
           ++    +    I +  L+      G++    ELI+    S   +   TYNT+L +  +  
Sbjct: 222 NLVDGGVTKDVIGLNTLIDGYCEAGLMSQATELIENSWRSDVKIDIVTYNTLLKAFCKTG 281

Query: 524 ESHRAMEIFKQM-------------------KTCGIPPNAATYNIMI------------- 551
           +  RA  +F ++                   +   + P   TY  +I             
Sbjct: 282 DLTRAESLFNEILGFWKDEDRLKNNDVVTQNEIKNLQPTLVTYTTLIAAYCKFVGVEESH 341

Query: 552 ----------------DCCSIIRCF------KSASALVSMMVRDGFYPQTMTYTALIKIL 589
                            C SI+  F        A+ L   M   G  P  ++Y  +I  L
Sbjct: 342 SLYKKMIMNGIMPDVVTCSSILYGFCRHGKLTEAAVLFREMYEMGLDPNHVSYATIINSL 401

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVL--------------------LYNTILK------- 622
              G   EA NL   + + GI  D++                    ++ TILK       
Sbjct: 402 FKSGRVMEAFNLQSQMVVRGISFDIVTCTTVMDGLFKVGKTKEAEEVFETILKLNLAPNC 461

Query: 623 --------KACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQV 674
                     C+ G++++ E ++++M +  V P+  T   + +GY   G  + A++ L+ 
Sbjct: 462 VTYSALLDGYCKLGKMELAELVLQKMEKEHVPPNVITFSSIINGYAKKGMLSKAVDVLRE 521

Query: 675 LSMR 678
           +  R
Sbjct: 522 MVQR 525


>gi|384249157|gb|EIE22639.1| hypothetical protein COCSUDRAFT_66323 [Coccomyxa subellipsoidea
           C-169]
          Length = 890

 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 92/377 (24%), Positives = 164/377 (43%), Gaps = 30/377 (7%)

Query: 299 VIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGME-VLKIMQQN 357
           VIHA  R +++ LA +++L M   G++  +  Y+  +R + +D G   G+E V+  M   
Sbjct: 467 VIHAAERARDAELAHRVVLAMHKAGVRADTAIYNSILRLVAADGGGPTGLEAVVTEMGVR 526

Query: 358 NLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPK--PFSAFLAACDTMDKPERA 414
            +     +   L   C    +L  A +++ + +     P    F+A L A       E A
Sbjct: 527 GIPLDRRSYFLLLRACGSDGDLSGAMSVMQRMLQDGITPDRFTFNALLEAHAAAGSLEGA 586

Query: 415 IKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEG-------------NMFSQVDSAKR 460
            K++  M Q+ + PDI T+  LF        P E               ++   +    R
Sbjct: 587 SKVYDTMAQRRIAPDICTFIALFQAV-KAQGPLEAPASAAAAAQDGGGASLLYHMRGNAR 645

Query: 461 INAIEM------DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDS-KTP-LGTPTY 512
            NA ++      D   + + H+  S+  L++ALG   +I  ++    ++   P L  P+ 
Sbjct: 646 ANAADLLHNWLQDFEASGVPHTPQSLTALVQALGHTCLIEPMLDLIGEAWNAPDLPRPSI 705

Query: 513 NTVLHSLVEAQESHR---AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSM 569
                ++       R   AM ++K M+  G+  +  TY  +I  C+  R    A  L   
Sbjct: 706 YACNAAIAACARVGRLEEAMALYKDMERGGLAADMYTYTSLIGGCAYTRQPALAYELFEE 765

Query: 570 MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
           M +    P   TY ALIK     G+F +AL+L+D++  EG+  DV  + T++  A   G+
Sbjct: 766 MRQHALRPNVYTYNALIKAECHVGNFTQALHLVDVMEDEGVVPDVATWGTLMSAAKYLGQ 825

Query: 630 IDVIEFIIEQMHQNKVQ 646
               E ++E+M+  + Q
Sbjct: 826 TAAAEMVLERMNGRREQ 842



 Score = 43.9 bits (102), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 30/142 (21%), Positives = 63/142 (44%), Gaps = 3/142 (2%)

Query: 515 VLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSA-SALVSMMVRD 573
           V+H+   A+++  A  +   M   G+  + A YN ++   +      +   A+V+ M   
Sbjct: 467 VIHAAERARDAELAHRVVLAMHKAGVRADTAIYNSILRLVAADGGGPTGLEAVVTEMGVR 526

Query: 574 GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVI 633
           G      +Y  L++     GD   A++++  +  +GI  D   +N +L+     G ++  
Sbjct: 527 GIPLDRRSYFLLLRACGSDGDLSGAMSVMQRMLQDGITPDRFTFNALLEAHAAAGSLEGA 586

Query: 634 EFIIEQMHQNKVQPDPSTCHFV 655
             + + M Q ++ PD   C F+
Sbjct: 587 SKVYDTMAQRRIAPD--ICTFI 606


>gi|449451896|ref|XP_004143696.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 1032

 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 117/566 (20%), Positives = 220/566 (38%), Gaps = 82/566 (14%)

Query: 115 EKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSM 174
           EKE   N   Y   +  LC+ G ++EA  +   + E+ G+ P    Y   +    K    
Sbjct: 269 EKECKPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEK-GLGPDGHTYTLLVDGFCKQKRS 327

Query: 175 VHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYSLSIFSLRKF 233
             A L  + M S  +  N  TYT L+   + + N+     I ++ I +   L++ +    
Sbjct: 328 KEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAM 387

Query: 234 VWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLR 293
           +    +  ++  A      M+   M G                            ++   
Sbjct: 388 IGGIAKAGEMAKAMSLFNEML---MAG----------------------------LEPDT 416

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           W+++ +I    ++ +   A +L+ +M++  L PS  TY   I  +     L+   EVL  
Sbjct: 417 WTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQ 476

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLD-QISRCTNPKPF--SAFLAACDTMDK 410
           M +N +KP      TL     +    ++A  LL   I+    P  F  +  +       K
Sbjct: 477 MIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKK 536

Query: 411 PERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI--NAIEMD 467
            E A  +   M +K ++P+  TY    +L+              ++  A+R   + +   
Sbjct: 537 VEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKS----------GEIQVAERYFKDMLSSG 586

Query: 468 MARNNIQHS-----HISMKNLLKALGA------EGMIRELIQYFCDSKTPLGTPTYNTVL 516
           +  NN+ ++     H  + N ++AL        +G+I ++               Y+ ++
Sbjct: 587 IVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDI-------------RAYSAII 633

Query: 517 HSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFY 576
           HSL +  ++  AM +F +    G+ P+   YN +I         + AS L   M+ +G  
Sbjct: 634 HSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGIN 693

Query: 577 PQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFI 636
           P  + Y  LI  L   G+  +A  L D +  + +  DV+ Y+TI+   C+ G +     +
Sbjct: 694 PNIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTIIDGYCKSGNLTEAFKL 753

Query: 637 IEQMHQNKVQPDPSTCHFVFSGYVNC 662
            ++M    + PD         GY+ C
Sbjct: 754 FDEMISKGISPD---------GYIYC 770



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 111/517 (21%), Positives = 199/517 (38%), Gaps = 54/517 (10%)

Query: 156 PILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEI 215
           P L  YN+F+G   +  ++  A     LM  + +G +  TYT L+     QK       I
Sbjct: 274 PNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLI 333

Query: 216 WEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEG-RLRS 274
           +E      S+    L    +++T L D                 G +      E  R++ 
Sbjct: 334 FE------SMPSSGLNPNRFTYTALID-----------------GFIKEGNIEEALRIKD 370

Query: 275 SRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGF 334
             +   + LN +        +++ +I    +      A  L  +M   GL+P + TY+  
Sbjct: 371 EMITRGLKLNVV--------TYNAMIGGIAKAGEMAKAMSLFNEMLMAGLEPDTWTYNLL 422

Query: 335 IRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTN 394
           I   +    +    E+L  M+   L P   T + L      + +L  A  +LDQ+ R   
Sbjct: 423 IDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIR-NG 481

Query: 395 PKP----FSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEG 449
            KP    +   + A     + E AI++   M    + PD+  Y  L  + G   A     
Sbjct: 482 VKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCL--IIGLCRA----- 534

Query: 450 NMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGT 509
               +V+ AK    + +DM    I+ +  +    +      G I+   +YF D  +    
Sbjct: 535 ---KKVEEAK---MLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIV 588

Query: 510 PT---YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASAL 566
           P    Y  ++    +   +  A+  FK M   G+ P+   Y+ +I   S     K A  +
Sbjct: 589 PNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGV 648

Query: 567 VSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE 626
               ++ G  P    Y +LI      GD ++A  L D +   GI  ++++YNT++   C+
Sbjct: 649 FLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINGLCK 708

Query: 627 KGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
            G +     + +++ +  + PD  T   +  GY   G
Sbjct: 709 LGEVTKARELFDEIEEKDLVPDVVTYSTIIDGYCKSG 745



 Score = 72.8 bits (177), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 73/372 (19%), Positives = 156/372 (41%), Gaps = 54/372 (14%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           +++++VI A  +  +    + ++ +M+    +P+  TY+ FI  +     +   +EV K+
Sbjct: 243 YTYTNVIKAHCKVGDVIKGKMVLSEMEK-ECKPNLFTYNAFIGGLCQTGAVDEALEVKKL 301

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPER 413
           M +  L P D    TL V+                   C   +   A L           
Sbjct: 302 MMEKGLGP-DGHTYTLLVD-----------------GFCKQKRSKEAKL----------- 332

Query: 414 AIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNN 472
              IF  M    L P+  TY  L   F       +EGN    ++ A RI     +M    
Sbjct: 333 ---IFESMPSSGLNPNRFTYTALIDGF------IKEGN----IEEALRIKD---EMITRG 376

Query: 473 IQHSHISMKNLLKALGAEGMIRELIQYFCD---SKTPLGTPTYNTVLHSLVEAQESHRAM 529
           ++ + ++   ++  +   G + + +  F +   +     T TYN ++   +++ +  +A 
Sbjct: 377 LKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGLEPDTWTYNLLIDGYLKSHDMAKAC 436

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
           E+  +MK   + P+  TY+++I         + A+ ++  M+R+G  P    Y  LIK  
Sbjct: 437 ELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAY 496

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649
           +    ++ A+ LL ++   G+  D+  YN ++   C   +++  + ++  M +  ++P+ 
Sbjct: 497 VQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNA 556

Query: 650 STCHFVFSGYVN 661
            T    +  ++N
Sbjct: 557 HT----YGAFIN 564



 Score = 70.9 bits (172), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 84/389 (21%), Positives = 157/389 (40%), Gaps = 23/389 (5%)

Query: 295  SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
            ++S +IH+  +   +  A  + L+    G+ P    Y+  I     +  +    ++   M
Sbjct: 628  AYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEM 687

Query: 355  QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKP 411
              N + P      TL     K  E+  A  L D+I       +   +S  +         
Sbjct: 688  LHNGINPNIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTIIDGYCKSGNL 747

Query: 412  ERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNM---FSQVDSAKRINAIEMD 467
              A K+F +M  K + PD   Y +L    G      +EGN+    S    A++ +   + 
Sbjct: 748  TEAFKLFDEMISKGISPDGYIYCILIDGCG------KEGNLEKALSLFHEAQQKSVGSLS 801

Query: 468  MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHR 527
             A N++  S      +++A       REL     D K      TY  ++ +  +A+    
Sbjct: 802  -AFNSLIDSFCKHGKVIEA-------RELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEE 853

Query: 528  AMEIFKQMKTCGIPPNAATY-NIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
            A ++F  M+T  I PN  TY ++++    I   FK  S    M  R G     + Y  + 
Sbjct: 854  AEQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEAR-GIACDAIAYGVMA 912

Query: 587  KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
                  G   EAL LL+   +EGI  +  +++ ++   C++ +I  +  ++ +M + ++ 
Sbjct: 913  SAYCKEGKSLEALKLLNKSLVEGIKLEDDVFDALIFHLCKEKQISTVLELLSEMGKEELS 972

Query: 647  PDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
                TC+ +  G+   G  + A + L V+
Sbjct: 973  LSSKTCNTLLLGFYKSGNEDEASKVLGVM 1001



 Score = 70.1 bits (170), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 76/170 (44%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TYN  +  L +      A+E+ K M   G+ P+  TY +++D     +  K A  +   M
Sbjct: 278 TYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESM 337

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
              G  P   TYTALI   +  G+ +EAL + D +   G+  +V+ YN ++    + G +
Sbjct: 338 PSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEM 397

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRML 680
                +  +M    ++PD  T + +  GY+       A E L  +  R L
Sbjct: 398 AKAMSLFNEMLMAGLEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKL 447



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 61/285 (21%), Positives = 110/285 (38%), Gaps = 25/285 (8%)

Query: 416 KIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKR-----INAIEMDMA 469
           K++  M + K+ PD+ TY  +      V    +   + S+++   +      NA    + 
Sbjct: 228 KVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEMEKECKPNLFTYNAFIGGLC 287

Query: 470 RNNIQHSHISMKNLL--KALGAEGMIREL-IQYFCDSKTPLGTP---------------- 510
           +       + +K L+  K LG +G    L +  FC  K                      
Sbjct: 288 QTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRF 347

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TY  ++   ++      A+ I  +M T G+  N  TYN MI   +       A +L + M
Sbjct: 348 TYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEM 407

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           +  G  P T TY  LI   L   D  +A  LL  +    +      Y+ ++   C    +
Sbjct: 408 LMAGLEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDL 467

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
                +++QM +N V+P+      +   YV    +  A+E L+++
Sbjct: 468 QKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIM 512



 Score = 46.6 bits (109), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 71/177 (40%), Gaps = 6/177 (3%)

Query: 491 GMIRELIQYFCDSKTPLGTPTY---NTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATY 547
           G + E    F  S +    PT    N ++  L++A       +++  M    I P+  TY
Sbjct: 186 GFLNEASSVFIASISEGFFPTLICCNNLMRDLLKANMMGLFWKVYGSMVEAKIVPDVYTY 245

Query: 548 -NIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVS 606
            N++   C +    K    L  M       P   TY A I  L   G  DEAL +  L+ 
Sbjct: 246 TNVIKAHCKVGDVIKGKMVLSEM--EKECKPNLFTYNAFIGGLCQTGAVDEALEVKKLMM 303

Query: 607 LEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
            +G+  D   Y  ++   C++ R    + I E M  + + P+  T   +  G++  G
Sbjct: 304 EKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKEG 360


>gi|449455685|ref|XP_004145582.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 96/391 (24%), Positives = 160/391 (40%), Gaps = 25/391 (6%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           ++F+  I   GR      A ++  +M   G  P   TY   I A+ +   L N  E+   
Sbjct: 263 YTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVK 322

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKP-- 411
           M+ N  KP      TL  + +   +LD  +    Q+           F    D + K   
Sbjct: 323 MKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARD 382

Query: 412 -ERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
            + A   F  MR Q + P++ TY  L    G + A   E       D+ K +  +E    
Sbjct: 383 FDEAFATFDVMRKQGILPNLHTYNTLIC--GLLRAGRIE-------DALKLLGTME---- 429

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTY---NTVLHSLVEAQESH 526
              +Q +  +    +   G  G   + ++ F   K     P     N  L+SL E     
Sbjct: 430 SVGVQPTAYTYNIFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLR 489

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
            A  +F  ++  G+ P++ TYN+M+ C S +     A  L+S M+R+G  P  +   +LI
Sbjct: 490 EAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLI 549

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
             L   G  DEA  + D +    +   V+ YNT+L    ++GR+     + E M + K  
Sbjct: 550 DSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIEKKCS 609

Query: 647 PDPSTCHFVFSGYVNCGFHNSAME-ALQVLS 676
           P+  +    F+  ++C   N  +E AL++ S
Sbjct: 610 PNTIS----FNTLLDCFCKNDEVELALKMFS 636



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 118/533 (22%), Positives = 225/533 (42%), Gaps = 61/533 (11%)

Query: 190 GKNEVTYTELLKLAVWQ------KNLSAVHEIWE-DYIKHYSLSIFSLRKFVWSFTRLRD 242
           GK E+  +E   L V +      + LS  + I E   + H + +   + +F+    ++ D
Sbjct: 81  GKTEIRVSEDEVLGVLKSMTDPIRALSYFYSISEFPTVLHTTETCNFMLEFLRVHDKVED 140

Query: 243 LKSAYETLQHMV-------------ALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVM 289
           + + +E +Q  +             AL++ G L    T   ++R +       LNA    
Sbjct: 141 MAAVFEFMQKKIIRRDLDTYLTIFKALSIRGGLRQMTTVLNKMRKAGF----VLNA---- 192

Query: 290 KVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGME 349
               +S++ +IH   ++   G A ++  +M S GL+PS  TY   + A+   R     M 
Sbjct: 193 ----YSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMVMV 248

Query: 350 VLKIMQQNNLKPQDSTIATLSVECSKALELDLAEAL---LDQISRCTNPKPFSAFLAACD 406
           +LK M+   L+P   T         +A ++D A  +   +D      +   ++  + A  
Sbjct: 249 LLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALC 308

Query: 407 TMDKPERAIKIFAKMRQKL-RPDIRTYELL---FSLFGNVNAPYE-------EGNMFSQV 455
              + E A ++F KM+    +PD   Y  L   F+ FG+++   E       +G M   V
Sbjct: 309 NAGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVV 368

Query: 456 DSAKRINAI----EMD--------MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDS 503
                ++ +    + D        M +  I  +  +   L+  L   G I + ++     
Sbjct: 369 TFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLGTM 428

Query: 504 KTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCF 560
           ++    P   TYN  +    ++ E+ +A+E F++MK  GI PN    N  +   + +   
Sbjct: 429 ESVGVQPTAYTYNIFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRL 488

Query: 561 KSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTI 620
           + A  + + +  +G  P ++TY  ++K     G  DEA+NLL  +   G   DV++ N++
Sbjct: 489 REAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSL 548

Query: 621 LKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           +    + GR+D    + ++M   K+ P   T + + SG    G    A+E  +
Sbjct: 549 IDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFE 601



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 145/682 (21%), Positives = 273/682 (40%), Gaps = 71/682 (10%)

Query: 54  ATQMQIVDALCR-GERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRM 112
            T   ++DALC  G+   A  L + +    H      +  +L+      D     E W  
Sbjct: 298 VTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQ 357

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
           ME      +   + +++  LCK    +EA    + +  + GI P L  YN+ +    +  
Sbjct: 358 MEADGYMPDVVTFTILVDVLCKARDFDEAFA-TFDVMRKQGILPNLHTYNTLICGLLRAG 416

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNL---SAVHEIWEDYIKHYSLSIFS 229
            +  A   L  M+S  VG     YT  + +  + K+     AV    +   K    +I +
Sbjct: 417 RIEDALKLLGTMES--VGVQPTAYTYNIFIDYFGKSGETGKAVETFEKMKAKGIVPNIVA 474

Query: 230 LRKFVWSFT---RLRDLKSAYETLQH------MVALAMMGKLYINRTSEGRLRSSRLDIP 280
               ++S     RLR+ K+ +  L+        V   MM K Y ++  +     + L   
Sbjct: 475 CNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCY-SKVGQVDEAVNLLSEM 533

Query: 281 IPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVS 340
           I     P + V+  S  D ++  GR      A Q+  +M+ + L P+  TY+  +  +  
Sbjct: 534 IRNGCEPDVIVVN-SLIDSLYKAGRVDE---AWQMFDRMKDMKLSPTVVTYNTLLSGLGK 589

Query: 341 DRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP--- 397
           +  ++  +E+ + M +    P   +  TL     K  E++LA  +  +++   + KP   
Sbjct: 590 EGRVQKAIELFESMIEKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMT-VMDCKPDVL 648

Query: 398 -FSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTY---------------------ELL 435
            ++  +      +K   A   F ++++ + PD  T                      + +
Sbjct: 649 TYNTVIYGLIKENKVNHAFWFFHQLKKSMHPDHVTICTLLPGLVKCGQIGDAISIARDFM 708

Query: 436 FSLFGNVNAPYEEGNMFSQVDSAKRINAIEM--DMARNNIQHSHISMKNLLKALGAEGMI 493
           + +   VN  + E  M   +  A+   AI    ++  N I      +  L++ L      
Sbjct: 709 YQVRFRVNRSFWEDLMGGTLVEAEMDKAIIFAEELVLNGICREDSFLIPLVRVLCKHK-- 766

Query: 494 RELIQY--FCDSKTPLG-TPT---YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATY 547
           REL  Y  F      LG +PT   YN ++  L+E   + +A ++FK MK  G  P+A T+
Sbjct: 767 RELYAYQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTF 826

Query: 548 NIMI----DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL- 602
           N+++        I   F+    ++S   +    P  +TY  +I  L    + D+AL+   
Sbjct: 827 NMLLAVHGKSGKITELFELYKEMISRRCK----PDAITYNIVISSLAKSNNLDKALDFFY 882

Query: 603 DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNC 662
           DLVS +  P     Y  ++    + GR++    + E+M     +P+ +  + + +GY   
Sbjct: 883 DLVSSDFRPTP-RTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKI 941

Query: 663 GFHNSAMEALQVLSMRMLCEEV 684
           G   +A +  +    RM+ E +
Sbjct: 942 GDTETACQLFK----RMVNEGI 959



 Score = 79.3 bits (194), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 118/557 (21%), Positives = 229/557 (41%), Gaps = 37/557 (6%)

Query: 113  MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
            + E  +  ++  Y +MM+   K G ++EA NL+  +  R G  P + V NS + +  K  
Sbjct: 498  LRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEM-IRNGCEPDVIVVNSLIDSLYKAG 556

Query: 173  SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYSLSIFSLR 231
             +  A    D M    +    VTY  LL     +  +    E++E  I K  S +  S  
Sbjct: 557  RVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIEKKCSPNTISFN 616

Query: 232  KFVWSFTRLRDLKSAYETLQHMVALAMMGK-LYINRTSEGRLRSSRLDIPIPL-----NA 285
              +  F +  +++ A +    M  +      L  N    G ++ ++++           +
Sbjct: 617  TLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIKENKVNHAFWFFHQLKKS 676

Query: 286  LPVMKVLRWSFSDVIHACGRTQNS-GLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGL 344
            +    V   +    +  CG+  ++  +A   M Q++    + +   ++  +   + +  +
Sbjct: 677  MHPDHVTICTLLPGLVKCGQIGDAISIARDFMYQVR---FRVNRSFWEDLMGGTLVEAEM 733

Query: 345  RNGMEVLKIMQQNNLKPQDS-TIATLSVECSKALELDLAEALLDQISRCTNPKP----FS 399
               +   + +  N +  +DS  I  + V C    EL  A  + D+ ++     P    ++
Sbjct: 734  DKAIIFAEELVLNGICREDSFLIPLVRVLCKHKREL-YAYQIFDKFTKKLGISPTLASYN 792

Query: 400  AFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSA 458
              +     +   E+A  +F  M+     PD  T+ +L ++ G      E   ++ ++ S 
Sbjct: 793  CLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISR 852

Query: 459  K-RINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCD--SKTPLGTP-TYNT 514
            + + +AI  ++  +++  S+    NL KAL           +F D  S     TP TY  
Sbjct: 853  RCKPDAITYNIVISSLAKSN----NLDKAL----------DFFYDLVSSDFRPTPRTYGP 898

Query: 515  VLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDG 574
            ++  L +      AM +F++M   G  PN A +NI+I+    I   ++A  L   MV +G
Sbjct: 899  LIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEG 958

Query: 575  FYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIE 634
              P   +YT L+  L   G  DEAL   + +   G+  D + YN I+    +  R++   
Sbjct: 959  IRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEAL 1018

Query: 635  FIIEQMHQNKVQPDPST 651
             +  +M    + PD  T
Sbjct: 1019 ALYNEMRNRGIVPDLYT 1035



 Score = 75.5 bits (184), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 60/269 (22%), Positives = 114/269 (42%), Gaps = 17/269 (6%)

Query: 414 AIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNN 472
           A++++ +M  + L+P ++TY  L    G             +   ++ +  +  +M    
Sbjct: 211 ALEVYRRMVSEGLKPSLKTYSALMVALG-------------KKRDSEMVMVLLKEMEDLG 257

Query: 473 IQHSHISMKNLLKALGAEGMIRELIQYF---CDSKTPLGTPTYNTVLHSLVEAQESHRAM 529
           ++ +  +    ++ LG  G I E  + F    D        TY  ++ +L  A +   A 
Sbjct: 258 LRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAK 317

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
           E+F +MK  G  P+   Y  ++D  +      +     S M  DG+ P  +T+T L+ +L
Sbjct: 318 ELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVL 377

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649
               DFDEA    D++  +GI  ++  YNT++      GRI+    ++  M    VQP  
Sbjct: 378 CKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLGTMESVGVQPTA 437

Query: 650 STCHFVFSGYVNCGFHNSAMEALQVLSMR 678
            T +     +   G    A+E  + +  +
Sbjct: 438 YTYNIFIDYFGKSGETGKAVETFEKMKAK 466



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 62/302 (20%), Positives = 130/302 (43%), Gaps = 26/302 (8%)

Query: 294  WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
            ++F+ ++   G++       +L  +M S   +P + TY+  I ++     L   ++    
Sbjct: 824  FTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYD 883

Query: 354  MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR--CT-NPKPFSAFLAACDTMDK 410
            +  ++ +P   T   L    +K   L+ A  L +++S   C  N   F+  +     +  
Sbjct: 884  LVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGD 943

Query: 411  PERAIKIFAKM-RQKLRPDIRTYELL---FSLFGNVNAPYEEGNMFSQVDSAKRINAIEM 466
             E A ++F +M  + +RPD+++Y +L     L G V+   E    F+++ S         
Sbjct: 944  TETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVD---EALYYFNELKST-------- 992

Query: 467  DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQ 523
                  +    I+   ++  LG    + E +  + + +     P   TYN+++ +L  A 
Sbjct: 993  -----GLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAG 1047

Query: 524  ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
               +A  ++++++  G+ P+  TYN +I   S+    + A  +   M+ DG  P   TY 
Sbjct: 1048 MVEQAKRMYEELQLAGLEPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPNIGTYA 1107

Query: 584  AL 585
             L
Sbjct: 1108 QL 1109


>gi|242066030|ref|XP_002454304.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
 gi|241934135|gb|EES07280.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
          Length = 638

 Score = 95.9 bits (237), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 98/432 (22%), Positives = 171/432 (39%), Gaps = 61/432 (14%)

Query: 287 PVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRN 346
           P+  V     S+V+   G  +    A  +  Q+++   QP++  Y+  I  ++ +     
Sbjct: 153 PICVVTPTELSEVVRMLGNAKMVSKAIAIFYQIKTRKCQPTAQAYNSMIIMLMHEGQYGK 212

Query: 347 GMEVLKIMQ-QNNLKPQDSTIATLSVECSKALELDLAEALLDQISRC---TNPKPFSAFL 402
             E+   M  + +  P   T + L     K    D A  LL+++         K ++  +
Sbjct: 213 VHELYNEMSTEGHCFPDTMTYSALISAFCKLGRRDSATQLLNEMKENGMQPTTKIYTMLI 272

Query: 403 AACDTMDKPERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI 461
                +D    A+ +F +MR Q  RPD+ TY  L    G      E  + F         
Sbjct: 273 TLFFKLDDVHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFF--------- 323

Query: 462 NAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHS 518
                +M R   +   + M N++  LG  G + + ++ F +  T    P   TYNT++ +
Sbjct: 324 ----YEMQREGCRPDTVVMNNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKA 379

Query: 519 LVEAQESHRAMEI---FKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGF 575
           L E++   RA E+   F++MK  GI P++ TY+I+ID        + A  L+  M   GF
Sbjct: 380 LFESKS--RASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGF 437

Query: 576 YP-----------------------------------QTMTYTALIKILLDYGDFDEALN 600
            P                                       Y  +IK L   G  D+A+N
Sbjct: 438 PPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAIN 497

Query: 601 LLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYV 660
           + D ++  G   DV  YN ++      G +D     + +M ++   PD ++ + + +G  
Sbjct: 498 MFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLA 557

Query: 661 NCGFHNSAMEAL 672
             G  + AME L
Sbjct: 558 KTGGPHRAMEML 569



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 95/212 (44%), Gaps = 5/212 (2%)

Query: 467 DMARNNI-QHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPT---YNTVLHSLVEA 522
           +M RN I   +   +  +++ LG   M+ + I  F   KT    PT   YN+++  L+  
Sbjct: 148 EMVRNPICVVTPTELSEVVRMLGNAKMVSKAIAIFYQIKTRKCQPTAQAYNSMIIMLMHE 207

Query: 523 QESHRAMEIFKQMKTCG-IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMT 581
            +  +  E++ +M T G   P+  TY+ +I     +    SA+ L++ M  +G  P T  
Sbjct: 208 GQYGKVHELYNEMSTEGHCFPDTMTYSALISAFCKLGRRDSATQLLNEMKENGMQPTTKI 267

Query: 582 YTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMH 641
           YT LI +     D   AL+L + +  +    DV  Y  +++   + GRID       +M 
Sbjct: 268 YTMLITLFFKLDDVHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQ 327

Query: 642 QNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           +   +PD    + + +     G  + AM+  Q
Sbjct: 328 REGCRPDTVVMNNMINFLGKAGRLDDAMKLFQ 359



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/306 (21%), Positives = 134/306 (43%), Gaps = 31/306 (10%)

Query: 297 SDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEV---LKI 353
           +++I+  G+      A +L  +M +L   PS  TY+  I+A+   +      EV    + 
Sbjct: 339 NNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKALFESKS--RASEVPSWFER 396

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPER 413
           M+++ + P   T + L     K   ++ A  LL+++     P   +A+ +  D + K +R
Sbjct: 397 MKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKR 456

Query: 414 ---AIKIFAKMRQKL-RPDIRTYELLFSLFGNVNAPYEEGNMFSQVDS------AKRINA 463
              A ++F ++++       R Y ++    G      +  NMF +++           NA
Sbjct: 457 YDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNA 516

Query: 464 IEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQ 523
           +   +AR  +    +S    ++ +   G I ++              +YN +L+ L +  
Sbjct: 517 LMSGLARTGMLDEALST---MRRMQEHGCIPDI-------------NSYNIILNGLAKTG 560

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
             HRAME+   MK   + P+  +YN ++   S    F+ A+ L+  M   GF    +TY+
Sbjct: 561 GPHRAMEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEAAKLMEEMNTLGFEYDLITYS 620

Query: 584 ALIKIL 589
           ++++ +
Sbjct: 621 SILEAI 626



 Score = 52.8 bits (125), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 77/382 (20%), Positives = 146/382 (38%), Gaps = 40/382 (10%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           ++S +I A  +      A QL+ +M+  G+QP++  Y   I        +   + + + M
Sbjct: 232 TYSALISAFCKLGRRDSATQLLNEMKENGMQPTTKIYTMLITLFFKLDDVHGALSLFEEM 291

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSA-------FLAACDT 407
           +    +P   T   L     KA  +D A     ++ R    +P +        FL     
Sbjct: 292 RHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQR-EGCRPDTVVMNNMINFLGKAGR 350

Query: 408 MDKPERAIKIFAKMRQKLR--PDIRTYELLF-SLFGNVNAPYEEGNMFSQ---------- 454
           +D    A+K+F +M   LR  P + TY  +  +LF + +   E  + F +          
Sbjct: 351 LDD---AMKLFQEM-GTLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSS 406

Query: 455 ------VDSAKRINAIEM------DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCD 502
                 +D   + N +E       +M          +  +L+ ALG         + F +
Sbjct: 407 FTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQE 466

Query: 503 SKTPLGTPT---YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRC 559
            K   G+ +   Y  ++  L +A     A+ +F +M   G  P+   YN ++   +    
Sbjct: 467 LKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGM 526

Query: 560 FKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNT 619
              A + +  M   G  P   +Y  ++  L   G    A+ +L  +    +  DV+ YNT
Sbjct: 527 LDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNT 586

Query: 620 ILKKACEKGRIDVIEFIIEQMH 641
           +L      G  +    ++E+M+
Sbjct: 587 VLGALSHAGMFEEAAKLMEEMN 608



 Score = 47.4 bits (111), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 94/437 (21%), Positives = 166/437 (37%), Gaps = 54/437 (12%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCL-DL 183
           Y  ++ A CK G  + A+ L+  + E  G+ P   +Y   +    KL   VH  L L + 
Sbjct: 233 YSALISAFCKLGRRDSATQLLNEMKEN-GMQPTTKIYTMLITLFFKLDD-VHGALSLFEE 290

Query: 184 MDSRMVGKNEVTYTELLK-LAVWQKNLSAVHEIWE---DYIKHYSLSIFSLRKFVWSFTR 239
           M  +    +  TYTEL++ L    +   A H  +E   +  +  ++ + ++  F+    R
Sbjct: 291 MRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRPDTVVMNNMINFLGKAGR 350

Query: 240 LRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDV 299
           L D   A +  Q M                G LR     IP  +    ++K L  S S  
Sbjct: 351 LDD---AMKLFQEM----------------GTLRC----IPSVVTYNTIIKALFESKS-- 385

Query: 300 IHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNL 359
                    +        +M+  G+ PSS TY   I        +   M +L+ M +   
Sbjct: 386 --------RASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGF 437

Query: 360 KPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKPERAIK 416
            P  +   +L     KA   DLA  L  ++      ++ + ++  +       + + AI 
Sbjct: 438 PPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAIN 497

Query: 417 IFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQH 475
           +F +M +    PD+  Y  L S             M  +  S  R   ++      +I  
Sbjct: 498 MFDEMNKLGCAPDVYAYNALMSGLART-------GMLDEALSTMR--RMQEHGCIPDINS 548

Query: 476 SHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQM 535
            +I +  L K  G    + E++     S       +YNTVL +L  A     A ++ ++M
Sbjct: 549 YNIILNGLAKTGGPHRAM-EMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEAAKLMEEM 607

Query: 536 KTCGIPPNAATYNIMID 552
            T G   +  TY+ +++
Sbjct: 608 NTLGFEYDLITYSSILE 624


>gi|297844198|ref|XP_002889980.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335822|gb|EFH66239.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 517

 Score = 95.9 bits (237), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 86/382 (22%), Positives = 156/382 (40%), Gaps = 35/382 (9%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           W+F+  +    R    G A Q    M   G +P   +Y   I  +     + + +E+   
Sbjct: 115 WAFNIYLDLLCRENKVGFAVQTFFCMVQRGREPDVVSYTILINGLFRAGKVTDAVEIWNA 174

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPK----PFSAFLAACDTMD 409
           M ++ + P +   A L V    A ++DLA  ++ +  +    K     ++A ++      
Sbjct: 175 MIRSGVSPDNKACAALVVGLCHARKVDLAYEMVAEEIKSARVKLSIVVYNALISGFCKAG 234

Query: 410 KPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
           + E+A  + + M +    PD+ TY +L +        Y + NM       KR   +  +M
Sbjct: 235 RIEKAEALKSFMSKIGCEPDLVTYNVLLNY-------YYDNNML------KRAEGVMTEM 281

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLG---TPTYNTVLHSLVEAQES 525
            R+ IQ    S   LLK             +      P G     +Y+T++ +   A  +
Sbjct: 282 VRSGIQLDAYSYNQLLKRHCRVSHPDRCYSFMLKEMEPRGFCDVVSYSTLIETFCRASNT 341

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCF------KSASALVSMMVRDGFYPQT 579
            +A ++F++M+  GI  N  T+       S+I+ F        A  L+  M   G  P  
Sbjct: 342 KKAYKLFEEMRQKGIVTNVVTFT------SLIKAFLREGNSSVAKKLLDQMTELGLSPDR 395

Query: 580 MTYTALIKILLDYGDFDEALNLL-DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIE 638
           + YT ++  L   G+ D+A  +  D++  E  P D + YN+++   C  GR+     + E
Sbjct: 396 IFYTTILDHLCKSGNVDKAYGIFNDMIEHEITP-DAISYNSLISGLCRSGRVTEAIKLFE 454

Query: 639 QMHQNKVQPDPSTCHFVFSGYV 660
            M   +  PD  T  F+  G +
Sbjct: 455 DMKGKECCPDELTFKFIIGGLI 476



 Score = 40.4 bits (93), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 50/217 (23%), Positives = 86/217 (39%), Gaps = 17/217 (7%)

Query: 480 MKNLLKALGAEGMIRELIQYFCD---SKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMK 536
           + NL+K+    GMI   +Q F +   S   + +  YN  +  LV+      A  I++ M 
Sbjct: 16  IANLVKS----GMIDNAVQVFDEMRHSSYRVFSSDYNRFIGVLVKESRFELAEAIYRDMM 71

Query: 537 TCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFD 596
             G      TY+  I     ++ F+   AL+  M   GF P    +   + +L       
Sbjct: 72  PMGFSLIPFTYSRFISGLCKVKKFELIDALLRDMETLGFIPDIWAFNIYLDLLCRENKVG 131

Query: 597 EALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI-DVIEFIIEQMHQNKVQPDPSTCHFV 655
            A+     +   G   DV+ Y  ++      G++ D +E I   M ++ V PD   C  +
Sbjct: 132 FAVQTFFCMVQRGREPDVVSYTILINGLFRAGKVTDAVE-IWNAMIRSGVSPDNKACAAL 190

Query: 656 FSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRS 692
             G      H   ++    L+  M+ EE+ +   K S
Sbjct: 191 VVGLC----HARKVD----LAYEMVAEEIKSARVKLS 219


>gi|449485308|ref|XP_004157129.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g31850, chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score = 95.5 bits (236), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 96/391 (24%), Positives = 160/391 (40%), Gaps = 25/391 (6%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           ++F+  I   GR      A ++  +M   G  P   TY   I A+ +   L N  E+   
Sbjct: 263 YTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVK 322

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKP-- 411
           M+ N  KP      TL  + +   +LD  +    Q+           F    D + K   
Sbjct: 323 MKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARD 382

Query: 412 -ERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
            + A   F  MR Q + P++ TY  L    G + A   E       D+ K ++ +E    
Sbjct: 383 FDEAFATFDVMRKQGILPNLHTYNTLIC--GLLRAGRIE-------DALKLLDTME---- 429

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTY---NTVLHSLVEAQESH 526
              +Q +  +    +   G  G   + ++ F   K     P     N  L+SL E     
Sbjct: 430 SVGVQPTAYTYITFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLR 489

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
            A  +F  ++  G+ P++ TYN+M+ C S +     A  L+S M+R+G  P  +   +LI
Sbjct: 490 EAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLI 549

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
             L   G  DEA  + D +    +   V+ YNT+L    ++GR+     + E M   K  
Sbjct: 550 DSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIXKKCS 609

Query: 647 PDPSTCHFVFSGYVNCGFHNSAME-ALQVLS 676
           P+  +    F+  ++C   N  +E AL++ S
Sbjct: 610 PNTIS----FNTLLDCFCKNDEVELALKMFS 636



 Score = 89.7 bits (221), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 119/534 (22%), Positives = 226/534 (42%), Gaps = 63/534 (11%)

Query: 190 GKNEVTYTELLKLAVWQ------KNLSAVHEIWE-DYIKHYSLSIFSLRKFVWSFTRLRD 242
           GK E+  +E   L V +      + LS  + I E   + H + +   + +F+    ++ D
Sbjct: 81  GKTEIRVSEDEVLGVLKSMTDPIRALSYFYSISEFPTVLHTTETCNFMLEFLRVHDKVED 140

Query: 243 LKSAYETLQHMV-------------ALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVM 289
           + + +E +Q  +             AL++ G L    T   ++R +       LNA    
Sbjct: 141 MAAVFEFMQKKIIRRDLDTYLTIFKALSIRGGLRQMTTVLNKMRKAGF----VLNA---- 192

Query: 290 KVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGME 349
               +S++ +IH   ++   G A ++  +M S GL+PS  TY   + A+   R     M 
Sbjct: 193 ----YSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMVMV 248

Query: 350 VLKIMQQNNLKPQDSTIATLSVECSKALELDLAEAL---LDQISRCTNPKPFSAFLAACD 406
           +LK M+   L+P   T         +A ++D A  +   +D      +   ++  + A  
Sbjct: 249 LLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALC 308

Query: 407 TMDKPERAIKIFAKMRQKL-RPDIRTYELL---FSLFGNVNAPYE-------EGNMFSQV 455
              + E A ++F KM+    +PD   Y  L   F+ FG+++   E       +G M   V
Sbjct: 309 NAGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVV 368

Query: 456 DSAKRINAI----EMD--------MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDS 503
                ++ +    + D        M +  I  +  +   L+  L   G I + ++   D+
Sbjct: 369 TFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLL-DT 427

Query: 504 KTPLGTP----TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRC 559
              +G      TY T +    ++ E+ +A+E F++MK  GI PN    N  +   + +  
Sbjct: 428 MESVGVQPTAYTYITFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGR 487

Query: 560 FKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNT 619
            + A  + + +  +G  P ++TY  ++K     G  DEA+NLL  +   G   DV++ N+
Sbjct: 488 LREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNS 547

Query: 620 ILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           ++    + GR+D    + ++M   K+ P   T + + SG    G    A+E  +
Sbjct: 548 LIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFE 601



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 146/682 (21%), Positives = 273/682 (40%), Gaps = 71/682 (10%)

Query: 54  ATQMQIVDALCR-GERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRM 112
            T   ++DALC  G+   A  L + +    H      +  +L+      D     E W  
Sbjct: 298 VTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQ 357

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
           ME      +   + +++  LCK    +EA    + +  + GI P L  YN+ +    +  
Sbjct: 358 MEADGYMPDVVTFTILVDVLCKARDFDEAFA-TFDVMRKQGILPNLHTYNTLICGLLRAG 416

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNL---SAVHEIWEDYIKHYSLSIFS 229
            +  A   LD M+S  VG     YT +  +  + K+     AV    +   K    +I +
Sbjct: 417 RIEDALKLLDTMES--VGVQPTAYTYITFIDYFGKSGETGKAVETFEKMKAKGIVPNIVA 474

Query: 230 LRKFVWSFT---RLRDLKSAYETLQH------MVALAMMGKLYINRTSEGRLRSSRLDIP 280
               ++S     RLR+ K+ +  L+        V   MM K Y ++  +     + L   
Sbjct: 475 CNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCY-SKVGQVDEAVNLLSEM 533

Query: 281 IPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVS 340
           I     P + V+  S  D ++  GR      A Q+  +M+ + L P+  TY+  +  +  
Sbjct: 534 IRNGCEPDVIVVN-SLIDSLYKAGRVDE---AWQMFDRMKDMKLSPTVVTYNTLLSGLGK 589

Query: 341 DRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP--- 397
           +  ++  +E+ + M      P   +  TL     K  E++LA  +  +++   + KP   
Sbjct: 590 EGRVQKAIELFESMIXKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMT-VMDCKPDVL 648

Query: 398 -FSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTY---------------------ELL 435
            ++  +      +K   A   F ++++ + PD  T                      + +
Sbjct: 649 TYNTVIYGLIKENKVNHAFWFFHQLKKSMHPDHVTICTLLPGLVKCGQIGDAISIARDFM 708

Query: 436 FSLFGNVNAPYEEGNMFSQVDSAKRINAIEM--DMARNNIQHSHISMKNLLKALGAEGMI 493
           + +   VN  + E  M   +  A+   AI    ++  N I      +  L++ L      
Sbjct: 709 YQVRFRVNRSFWEDLMGGTLVEAEMDKAIIFAEELVLNGICREDSFLIPLVRVLCKHK-- 766

Query: 494 RELIQY--FCDSKTPLG-TPT---YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATY 547
           REL  Y  F      LG +PT   YN ++  L+E   + +A ++FK MK  G  P+A T+
Sbjct: 767 RELYAYQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTF 826

Query: 548 NIMI----DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL- 602
           N+++        I   F+    ++S   +    P  +TY  +I  L    + D+AL+   
Sbjct: 827 NMLLAVHGKSGKITELFELYKEMISRRCK----PDAITYNIVISSLAKSNNLDKALDFFY 882

Query: 603 DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNC 662
           DLVS +  P     Y  ++    + GR++    + E+M     +P+ +  + + +GY   
Sbjct: 883 DLVSSDFRPTP-RTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKI 941

Query: 663 GFHNSAMEALQVLSMRMLCEEV 684
           G   +A +  +    RM+ E +
Sbjct: 942 GDTETACQLFK----RMVNEGI 959



 Score = 82.8 bits (203), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 86/374 (22%), Positives = 152/374 (40%), Gaps = 25/374 (6%)

Query: 318 QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKAL 377
           +M+  G   ++++Y+G I  ++        +EV + M    LKP   T + L V   K  
Sbjct: 182 KMRKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKR 241

Query: 378 ELDLAEALLDQISRC---TNPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYE 433
           + ++   LL ++       N   F+  +       K + A +IF +M  +   PD+ TY 
Sbjct: 242 DSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYT 301

Query: 434 LLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMI 493
           +L     N            Q+++AK +            Q  +I++ +     G     
Sbjct: 302 VLIDALCNA----------GQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTF 351

Query: 494 RELI-QYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID 552
           +E   Q   D   P    T+  ++  L +A++   A   F  M+  GI PN  TYN +I 
Sbjct: 352 KEFWSQMEADGYMP-DVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLI- 409

Query: 553 CCSIIRC--FKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGI 610
            C ++R    + A  L+  M   G  P   TY   I      G+  +A+   + +  +GI
Sbjct: 410 -CGLLRAGRIEDALKLLDTMESVGVQPTAYTYITFIDYFGKSGETGKAVETFEKMKAKGI 468

Query: 611 PHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAME 670
             +++  N  L    E GR+   + +   + +N + PD  T + +   Y   G      E
Sbjct: 469 VPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVG---QVDE 525

Query: 671 ALQVLS--MRMLCE 682
           A+ +LS  +R  CE
Sbjct: 526 AVNLLSEMIRNGCE 539



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 118/557 (21%), Positives = 229/557 (41%), Gaps = 37/557 (6%)

Query: 113  MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
            + E  +  ++  Y +MM+   K G ++EA NL+  +  R G  P + V NS + +  K  
Sbjct: 498  LRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEM-IRNGCEPDVIVVNSLIDSLYKAG 556

Query: 173  SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYSLSIFSLR 231
             +  A    D M    +    VTY  LL     +  +    E++E  I K  S +  S  
Sbjct: 557  RVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIXKKCSPNTISFN 616

Query: 232  KFVWSFTRLRDLKSAYETLQHMVALAMMGK-LYINRTSEGRLRSSRLDIPIPL-----NA 285
              +  F +  +++ A +    M  +      L  N    G ++ ++++           +
Sbjct: 617  TLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIKENKVNHAFWFFHQLKKS 676

Query: 286  LPVMKVLRWSFSDVIHACGRTQNS-GLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGL 344
            +    V   +    +  CG+  ++  +A   M Q++    + +   ++  +   + +  +
Sbjct: 677  MHPDHVTICTLLPGLVKCGQIGDAISIARDFMYQVR---FRVNRSFWEDLMGGTLVEAEM 733

Query: 345  RNGMEVLKIMQQNNLKPQDS-TIATLSVECSKALELDLAEALLDQISRCTNPKP----FS 399
               +   + +  N +  +DS  I  + V C    EL  A  + D+ ++     P    ++
Sbjct: 734  DKAIIFAEELVLNGICREDSFLIPLVRVLCKHKREL-YAYQIFDKFTKKLGISPTLASYN 792

Query: 400  AFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSA 458
              +     +   E+A  +F  M+     PD  T+ +L ++ G      E   ++ ++ S 
Sbjct: 793  CLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISR 852

Query: 459  K-RINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCD--SKTPLGTP-TYNT 514
            + + +AI  ++  +++  S+    NL KAL           +F D  S     TP TY  
Sbjct: 853  RCKPDAITYNIVISSLAKSN----NLDKAL----------DFFYDLVSSDFRPTPRTYGP 898

Query: 515  VLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDG 574
            ++  L +      AM +F++M   G  PN A +NI+I+    I   ++A  L   MV +G
Sbjct: 899  LIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEG 958

Query: 575  FYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIE 634
              P   +YT L+  L   G  DEAL   + +   G+  D + YN I+    +  R++   
Sbjct: 959  IRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEAL 1018

Query: 635  FIIEQMHQNKVQPDPST 651
             +  +M    + PD  T
Sbjct: 1019 ALYNEMRNRGIVPDLYT 1035



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 62/302 (20%), Positives = 130/302 (43%), Gaps = 26/302 (8%)

Query: 294  WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
            ++F+ ++   G++       +L  +M S   +P + TY+  I ++     L   ++    
Sbjct: 824  FTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYD 883

Query: 354  MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR--CT-NPKPFSAFLAACDTMDK 410
            +  ++ +P   T   L    +K   L+ A  L +++S   C  N   F+  +     +  
Sbjct: 884  LVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGD 943

Query: 411  PERAIKIFAKM-RQKLRPDIRTYELL---FSLFGNVNAPYEEGNMFSQVDSAKRINAIEM 466
             E A ++F +M  + +RPD+++Y +L     L G V+   E    F+++ S         
Sbjct: 944  TETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVD---EALYYFNELKST-------- 992

Query: 467  DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQ 523
                  +    I+   ++  LG    + E +  + + +     P   TYN+++ +L  A 
Sbjct: 993  -----GLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAG 1047

Query: 524  ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
               +A  ++++++  G+ P+  TYN +I   S+    + A  +   M+ DG  P   TY 
Sbjct: 1048 MVEQAKRMYEELQLAGLEPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPNIGTYA 1107

Query: 584  AL 585
             L
Sbjct: 1108 QL 1109


>gi|255572227|ref|XP_002527053.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533615|gb|EEF35353.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 677

 Score = 95.5 bits (236), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 94/401 (23%), Positives = 167/401 (41%), Gaps = 24/401 (5%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ +I+A  R    G A ++M  M   GL+P+  TY+  I  +           V   M
Sbjct: 222 TYNTLINAYCREGLLGEAFEVMNSMSGKGLKPTLFTYNAVINGLCKKGRYVRAKGVFNEM 281

Query: 355 QQNNLKPQDSTIATLSVE-CSKALELDLAEALLDQISRCTNPK--PFSAFLAACDTMDKP 411
               L P  +T  TL VE C     L+  +   D + R  +P    FS+ +         
Sbjct: 282 LSIGLSPDTTTYNTLLVESCRNNNFLEAKDIFSDMLHRGVSPDLISFSSLIGVSSRNGHL 341

Query: 412 ERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI--NAIEMDM 468
           ++A+  F  M+   L PD   Y +L      +N     G M   ++   ++      +D+
Sbjct: 342 DQALMYFRDMKTSGLVPDNVIYTIL------INGYCRNGMMSEALEIRDKMLEQGCALDV 395

Query: 469 ARNNIQHSHISMKNLL---KALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQES 525
              N   + +  K LL    AL  E + R ++  FC         T+ T++H   +    
Sbjct: 396 VAYNTILNGLCKKKLLADANALFDEMVERGVVPDFC---------TFTTLIHGHCKEGNM 446

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
            +A+ +F  M    I P+  TYNI+ID        + A+ L + M+    +P  ++Y  L
Sbjct: 447 GKALSLFGIMTQKNIKPDIVTYNILIDGFCKTTEMEKANELWNEMISRKIFPNHISYAIL 506

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           +    + G   EA  L D +  +GI   ++  NT++K  C  G +   +  + +M    V
Sbjct: 507 VNGYCNLGFVSEAFRLWDEMIRKGIKPTLVTCNTVIKGYCRSGDLSKADEFLGKMISEGV 566

Query: 646 QPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
            PD  T + + +G+V   + + A   +  +  + L  +V T
Sbjct: 567 GPDSITYNTLINGFVKGEYMDKAFFLINKMETKGLQPDVVT 607



 Score = 75.9 bits (185), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 107/521 (20%), Positives = 204/521 (39%), Gaps = 76/521 (14%)

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
           ME+K I  +   Y  ++ A C+ G L EA  ++  +  + G+ P L  YN+ +    K  
Sbjct: 211 MEQKGIFADIVTYNTLINAYCREGLLGEAFEVMNSMSGK-GLKPTLFTYNAVINGLCKKG 269

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYSLSIFSLR 231
             V A    + M S  +  +  TY  LL  +    N     +I+ D + +  S  + S  
Sbjct: 270 RYVRAKGVFNEMLSIGLSPDTTTYNTLLVESCRNNNFLEAKDIFSDMLHRGVSPDLISFS 329

Query: 232 KFVWSFTR----------LRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPI 281
             +   +R           RD+K++      +V   ++  + IN      + S  L+I  
Sbjct: 330 SLIGVSSRNGHLDQALMYFRDMKTS-----GLVPDNVIYTILINGYCRNGMMSEALEIRD 384

Query: 282 PL----NALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRA 337
            +     AL V+     +++ +++   + +    A  L  +M   G+ P   T+   I  
Sbjct: 385 KMLEQGCALDVV-----AYNTILNGLCKKKLLADANALFDEMVERGVVPDFCTFTTLIHG 439

Query: 338 IVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPK 396
              +  +   + +  IM Q N+KP   T   L     K  E++ A  L ++ ISR     
Sbjct: 440 HCKEGNMGKALSLFGIMTQKNIKPDIVTYNILIDGFCKTTEMEKANELWNEMISR----- 494

Query: 397 PFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVD 456
                              KIF        P+  +Y +L + + N+    E   ++ +  
Sbjct: 495 -------------------KIF--------PNHISYAILVNGYCNLGFVSEAFRLWDE-- 525

Query: 457 SAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYN 513
                      M R  I+ + ++   ++K     G + +  ++     +    P   TYN
Sbjct: 526 -----------MIRKGIKPTLVTCNTVIKGYCRSGDLSKADEFLGKMISEGVGPDSITYN 574

Query: 514 TVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRD 573
           T+++  V+ +   +A  +  +M+T G+ P+  TYN++++        + A  ++  M+  
Sbjct: 575 TLINGFVKGEYMDKAFFLINKMETKGLQPDVVTYNVILNGFCRQGRMQEAELILRKMIER 634

Query: 574 GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEG-IPHD 613
           G  P   TYT LI   +   +  EA    D +   G +P D
Sbjct: 635 GIDPDRSTYTTLINGYVSQDNLKEAFRFHDEMLQRGFVPDD 675



 Score = 56.2 bits (134), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 73/164 (44%), Gaps = 3/164 (1%)

Query: 513 NTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVR 572
           N++L  LV+      A E++ ++   GI  N  T NIM++              +  M +
Sbjct: 154 NSLLGGLVKMGWVDLAWEVYNEIARSGIELNVYTLNIMVNALCKDHKIDDVKPFLIDMEQ 213

Query: 573 DGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDV 632
            G +   +TY  LI      G   EA  +++ +S +G+   +  YN ++   C+KGR   
Sbjct: 214 KGIFADIVTYNTLINAYCREGLLGEAFEVMNSMSGKGLKPTLFTYNAVINGLCKKGRYVR 273

Query: 633 IEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
            + +  +M    + PD +T + +    V    +N+ +EA  + S
Sbjct: 274 AKGVFNEMLSIGLSPDTTTYNTLL---VESCRNNNFLEAKDIFS 314



 Score = 44.3 bits (103), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 64/165 (38%)

Query: 484 LKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPN 543
           L  +G   +  E+      S   L   T N ++++L +  +          M+  GI  +
Sbjct: 160 LVKMGWVDLAWEVYNEIARSGIELNVYTLNIMVNALCKDHKIDDVKPFLIDMEQKGIFAD 219

Query: 544 AATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLD 603
             TYN +I+          A  +++ M   G  P   TY A+I  L   G +  A  + +
Sbjct: 220 IVTYNTLINAYCREGLLGEAFEVMNSMSGKGLKPTLFTYNAVINGLCKKGRYVRAKGVFN 279

Query: 604 LVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
            +   G+  D   YNT+L ++C        + I   M    V PD
Sbjct: 280 EMLSIGLSPDTTTYNTLLVESCRNNNFLEAKDIFSDMLHRGVSPD 324



 Score = 41.2 bits (95), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 52/117 (44%), Gaps = 2/117 (1%)

Query: 93  ILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERY 152
           I  YC RS D     E    M  + +G ++  Y  ++    KG Y+++A  LI  + E  
Sbjct: 542 IKGYC-RSGDLSKADEFLGKMISEGVGPDSITYNTLINGFVKGEYMDKAFFLINKM-ETK 599

Query: 153 GIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNL 209
           G+ P +  YN  L    +   M  A L L  M  R +  +  TYT L+   V Q NL
Sbjct: 600 GLQPDVVTYNVILNGFCRQGRMQEAELILRKMIERGIDPDRSTYTTLINGYVSQDNL 656


>gi|167998294|ref|XP_001751853.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162696951|gb|EDQ83288.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 657

 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 95/472 (20%), Positives = 190/472 (40%), Gaps = 47/472 (9%)

Query: 225 LSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLN 284
           + + S+   VW   ++R+  +A    +   + ++    ++  T    L   R        
Sbjct: 171 VDVRSMNVVVWQLGQMRNWDAASRVFRAFRSASVEPNAHVCTTLIAVLGYGR-------- 222

Query: 285 ALP-VMKVLRW-----------SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYD 332
            LP  +K+ RW           +F+ ++ ACGR      A +L  +M+ LGL P + T+ 
Sbjct: 223 RLPEALKLFRWMEKQGIERPIYTFNALMVACGRCGAGDTAVELFEEMKELGLAPDNITFR 282

Query: 333 GFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKAL----ELDLAEALLDQ 388
           G + A  +    +     + +MQ             +   C++A      L L +A+++Q
Sbjct: 283 GLVSATTAAGKWKAAQSFINLMQAGGFSFAIGEFTEMQWACARARNSRESLGLLQAMIEQ 342

Query: 389 I--SRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAP 445
               R  N   ++A L A +     E A++    +++K   PD  T+  L     N    
Sbjct: 343 GCEPRLEN---YNALLCAYEKTANWEEAVRTVVWIQEKGFTPDFITWSSLLGACANAG-- 397

Query: 446 YEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEG---MIRELIQYFCD 502
                       A++  A+   M  NN   + +S   LLKA    G      E+     +
Sbjct: 398 -----------QAEKAVAVMEKMKENNFTPNVVSWCYLLKAYQKTGNWEKTEEIFHSMLN 446

Query: 503 SKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKS 562
           S  P     +N++L +  + ++  R +   ++ +  G+  +   ++  I   +    ++ 
Sbjct: 447 SGCPPNEVAWNSLLSAYEKGRQWKRVLYTIEKQEELGVKLDVVAWSTTISALAKAGQWQL 506

Query: 563 ASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILK 622
           A   +  M + G  P  +TY++LIK   D G +++A ++   + LEGI  D      +L+
Sbjct: 507 AEKKIRQMKQSGCQPNIVTYSSLIKAYGDVGLWNKAESVFKSMLLEGIRPDSKACCALLR 566

Query: 623 KACEKGRIDVIEFIIEQ-MHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
              +  ++D + F  +  M +  ++PD      +F     CG    A + ++
Sbjct: 567 AYAKGRQLDKVMFFFDSMMPRYGIKPDKYAYAAIFWACWTCGEWQRAADYME 618



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 95/403 (23%), Positives = 154/403 (38%), Gaps = 42/403 (10%)

Query: 44  MGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAH-HSLGADDFFHILNYCARSPD 102
           +GL  ++I   T   +V A     + +A+   +NL  A   S    +F  +   CAR+ +
Sbjct: 272 LGLAPDNI---TFRGLVSATTAAGKWKAAQSFINLMQAGGFSFAIGEFTEMQWACARARN 328

Query: 103 PLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYN 162
               +   + M E+      + Y  ++ A  K    EEA   + ++ E+ G  P    ++
Sbjct: 329 SRESLGLLQAMIEQGCEPRLENYNALLCAYEKTANWEEAVRTVVWIQEK-GFTPDFITWS 387

Query: 163 SFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH 222
           S LGACA       A   ++ M       N V++  LLK      N     EI+   +  
Sbjct: 388 SLLGACANAGQAEKAVAVMEKMKENNFTPNVVSWCYLLKAYQKTGNWEKTEEIFHSMLN- 446

Query: 223 YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIP 282
              S     +  W+      L SAYE  +    +     LY     E        ++ + 
Sbjct: 447 ---SGCPPNEVAWN-----SLLSAYEKGRQWKRV-----LYTIEKQE--------ELGVK 485

Query: 283 LNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDR 342
           L+ +        ++S  I A  +     LAE+ + QM+  G QP+  TY   I+A   D 
Sbjct: 486 LDVV--------AWSTTISALAKAGQWQLAEKKIRQMKQSGCQPNIVTYSSLIKAY-GDV 536

Query: 343 GLRNGME-VLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP---- 397
           GL N  E V K M    ++P       L    +K  +LD      D +      KP    
Sbjct: 537 GLWNKAESVFKSMLLEGIRPDSKACCALLRAYAKGRQLDKVMFFFDSMMPRYGIKPDKYA 596

Query: 398 FSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLF 439
           ++A   AC T  + +RA      M      PD   Y  L +++
Sbjct: 597 YAAIFWACWTCGEWQRAADYMENMEAAGCTPDTMIYTTLITMY 639


>gi|302756537|ref|XP_002961692.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
 gi|300170351|gb|EFJ36952.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
          Length = 1056

 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 133/653 (20%), Positives = 268/653 (41%), Gaps = 42/653 (6%)

Query: 55  TQMQIVDALCR-GERSRASHLLLNL---GHAHHSLGADDFFHILNYCARSPDPLFVMETW 110
           T   ++D LCR  E  +   LL  +   G A +++  +   + L    R+ +   ++E  
Sbjct: 38  TYSTVIDGLCRDNEVDKGCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRAKEAFSLLE-- 95

Query: 111 RMMEEKEIGLNNKC------YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSF 164
           RM         N C      + L+++ LCK G +E A  ++  + +R G  P + ++   
Sbjct: 96  RMAA-------NGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMVDR-GFVPDVEIHTVL 147

Query: 165 LGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYS 224
           L A  +L  +  A      +       + VTY  ++        L A   + +   + +S
Sbjct: 148 LHALCELGRVDEAWFFFQQVLLIGFTPDAVTYNTMVDGLYKAGRLEAAGMVLQLLAESFS 207

Query: 225 L-SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMM-GKLYINRTSEGRLRSSRLDIPIP 282
             ++F+    V   ++  +L  AYE    M    +    +  +   +G  ++ +LDI + 
Sbjct: 208 SPTVFTFTIAVDGLSKAGNLTGAYEFFDSMPQTGVSPNTVTYDALIDGLCKAGKLDIALG 267

Query: 283 LNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDR 342
           L      +   ++FS ++H  G  Q   L E + L ++++   P+   ++  +  +   R
Sbjct: 268 LLRDKNSQAGMFAFSSLLH--GLCQAHRLEEAIQL-LKAMPCVPNVVCFNSLMNGLCQAR 324

Query: 343 GLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----F 398
            +    E+  +M+++       T   L     K   +  A   ++ + R     P    F
Sbjct: 325 RVDEAFELFDVMKESGCSADVITYNILLKGLCKLRRIPEAYRHVELMRRTEGCSPNVVTF 384

Query: 399 SAFLAACDTMDKPERAIKIFAKMR--QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQV- 455
           S  +       +  +A +++ +M   + + P+  TY  L                F Q+ 
Sbjct: 385 STLIQGLCNAGRVNQAWEVYERMVAVEGISPNRFTYAFLLEGLCKAGDSRRLEQCFEQML 444

Query: 456 ------DSAKRINAIEMDMARNNI-QHSHISMKNLLKALGAEGMIRE---LIQYFCDSKT 505
                  S+  I++ E+D     + + + ++   L+  L   GM+R+   L+++  +S  
Sbjct: 445 EREWRSSSSWPIHSPEVDFLMVQVCRPTLVTYNTLVTGLSKSGMVRDALGLLEFMIESGL 504

Query: 506 PLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASA 565
                T+N+VL  L + Q    A  +FK+    G  PN  TY+ +ID  S +     A  
Sbjct: 505 SPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQ 564

Query: 566 LVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKAC 625
           L++ MV  G    T+TY+ ++  LL  G  ++A+ +L  +   G   D + YNT++    
Sbjct: 565 LLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFF 624

Query: 626 EKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678
           ++ R+     ++ +M +    P   T   +  G    G  + A+E L  ++ R
Sbjct: 625 KRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAAR 677



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 124/585 (21%), Positives = 228/585 (38%), Gaps = 56/585 (9%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y  M+  L K G LE A  ++  L E +   P +  +   +   +K  ++  A    D M
Sbjct: 179 YNTMVDGLYKAGRLEAAGMVLQLLAESFS-SPTVFTFTIAVDGLSKAGNLTGAYEFFDSM 237

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLK 244
               V  N VTY  L+        L     +  D  K+    +F+    +    +   L+
Sbjct: 238 PQTGVSPNTVTYDALIDGLCKAGKLDIALGLLRD--KNSQAGMFAFSSLLHGLCQAHRLE 295

Query: 245 SAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVI---- 300
            A + L+ M  +  +  +  N    G  ++ R+D    L    VMK    S +DVI    
Sbjct: 296 EAIQLLKAMPCVPNV--VCFNSLMNGLCQARRVDEAFEL--FDVMKESGCS-ADVITYNI 350

Query: 301 ---HACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVL-KIMQQ 356
                C   +       + L  ++ G  P+  T+   I+ + +   +    EV  +++  
Sbjct: 351 LLKGLCKLRRIPEAYRHVELMRRTEGCSPNVVTFSTLIQGLCNAGRVNQAWEVYERMVAV 410

Query: 357 NNLKPQDSTIATLSVECSKALELDLAEALLDQIS----RCTNPKP--------------- 397
             + P   T A L     KA +    E   +Q+     R ++  P               
Sbjct: 411 EGISPNRFTYAFLLEGLCKAGDSRRLEQCFEQMLEREWRSSSSWPIHSPEVDFLMVQVCR 470

Query: 398 -----FSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNM 451
                ++  +           A+ +   M    L PD+ T+  +           +  N+
Sbjct: 471 PTLVTYNTLVTGLSKSGMVRDALGLLEFMIESGLSPDVITFNSVLDGLCKEQRILDAHNV 530

Query: 452 FSQVDSAKRINAIEMDMARNNIQHSHI--SMKNLLKALGAEGMIRELIQYFCDSKTPLGT 509
           F +        A+E     N + +S +   +  + K   A  ++ ++++  C + T    
Sbjct: 531 FKR--------ALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTV--- 579

Query: 510 PTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSM 569
            TY+TV+  L++      A+ + +QM+  G  P+A TYN +ID     +  + A  L+  
Sbjct: 580 -TYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLRE 638

Query: 570 MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
           M+  GF+P  +TYT L   L   G FDEA+ +LD ++  G   + + Y++I+   C+ GR
Sbjct: 639 MLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGR 698

Query: 630 IDVIEFIIEQMHQNK-VQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           +       E+M +++ V P       +  G    G  + A E L+
Sbjct: 699 VTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGRIDEAYEFLE 743



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 112/540 (20%), Positives = 212/540 (39%), Gaps = 31/540 (5%)

Query: 121 NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLC 180
           N  C+  +M  LC+   ++EA  L   + E  G    +  YN  L    KL  +  A   
Sbjct: 309 NVVCFNSLMNGLCQARRVDEAFELFDVMKES-GCSADVITYNILLKGLCKLRRIPEAYRH 367

Query: 181 LDLMD-SRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTR 239
           ++LM  +     N VT++ L++      N   V++ WE Y +  ++   S  +F ++F  
Sbjct: 368 VELMRRTEGCSPNVVTFSTLIQGLC---NAGRVNQAWEVYERMVAVEGISPNRFTYAFL- 423

Query: 240 LRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDV 299
           L  L  A ++ +       M +     +S   + S  +D  +     P +     +++ +
Sbjct: 424 LEGLCKAGDSRRLEQCFEQMLEREWRSSSSWPIHSPEVDFLMVQVCRPTL----VTYNTL 479

Query: 300 IHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNL 359
           +    ++     A  L+  M   GL P   T++  +  +  ++ + +   V K   +   
Sbjct: 480 VTGLSKSGMVRDALGLLEFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGC 539

Query: 360 KPQDSTIATLSVECSKALELDLAEALLDQISR--C-TNPKPFSAFLAACDTMDKPERAIK 416
           +P   T +TL    SK  ++D A  LL ++    C  N   +S  +     + + E A+ 
Sbjct: 540 RPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVV 599

Query: 417 IFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQH 475
           +  +MR     PD  TY  L              + F +    +    +  +M       
Sbjct: 600 VLRQMRDAGCLPDAVTYNTLI-------------DGFFKRQRLREAVGLLREMLEAGFHP 646

Query: 476 SHISMKNLLKALGAEGMIRELIQ---YFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIF 532
           S ++   L   L   G   E ++   Y           TY++++  L +A     A+  F
Sbjct: 647 SVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYF 706

Query: 533 KQM-KTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLD 591
           ++M +   + P+   Y+ +ID          A   +  M+R G  P  +T++ LI  L D
Sbjct: 707 EKMARDEVVAPHVIAYSALIDGLCKAGRIDEAYEFLERMIRAGRIPDVVTFSILINGLCD 766

Query: 592 YGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
            G  D  L L   ++  G   D+  YN ++   C KG       ++E+M  + +  +  T
Sbjct: 767 AGRIDTGLELFCGMAERGCKADIYAYNAMINAYCLKGEFSAAYALLEEMKTHGIAKNTVT 826



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 112/591 (18%), Positives = 230/591 (38%), Gaps = 73/591 (12%)

Query: 106 VMETW----RMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGER-------YGI 154
           V + W    RM+  + I  N   Y  +++ LCK G           + ER       + I
Sbjct: 397 VNQAWEVYERMVAVEGISPNRFTYAFLLEGLCKAGDSRRLEQCFEQMLEREWRSSSSWPI 456

Query: 155 Y-------------PILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLK 201
           +             P L  YN+ +   +K   +  A   L+ M    +  + +T+  +L 
Sbjct: 457 HSPEVDFLMVQVCRPTLVTYNTLVTGLSKSGMVRDALGLLEFMIESGLSPDVITFNSVLD 516

Query: 202 LAVWQKNLSAVHEIWEDYIKHYSL-SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMG 260
               ++ +   H +++  ++     ++ +    +   +++  +  A + L  MV L    
Sbjct: 517 GLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRA 576

Query: 261 KLYINRT-SEGRLRSSRLDIPIPLNALPVMKVLR--------WSFSDVIHACGRTQNSGL 311
                 T  +G L+  R++     +A+ V++ +R         +++ +I    + Q    
Sbjct: 577 NTVTYSTVVDGLLKVGRME-----DAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLRE 631

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A  L+ +M   G  PS  TY      +         +E+L  M      P   T +++  
Sbjct: 632 AVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVD 691

Query: 372 ECSKALELDLAEALLDQISRCTNPKP-FSAFLAACDTMDKPERAIKIFAKMRQKLR---- 426
              KA  +  A    ++++R     P   A+ A  D + K  R  + +  + + +R    
Sbjct: 692 GLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGRIDEAYEFLERMIRAGRI 751

Query: 427 PDIRTYELLFSLF---GNVNAPY-------EEG------------NMFSQVDSAKRINAI 464
           PD+ T+ +L +     G ++          E G            N +          A+
Sbjct: 752 PDVVTFSILINGLCDAGRIDTGLELFCGMAERGCKADIYAYNAMINAYCLKGEFSAAYAL 811

Query: 465 EMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFC----DSKTPLGTPTYNTVLHSLV 520
             +M  + I  + ++   ++KAL     I E + YF     D +  +   +YNT++ SLV
Sbjct: 812 LEEMKTHGIAKNTVTHGIVIKALCGNDRIDEAVSYFHSIPEDCRDEI---SYNTLITSLV 868

Query: 521 EAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTM 580
            ++ S +A+E+ + M   G  P+A  Y  ++D        + A+ L+  M   G  P   
Sbjct: 869 ASRRSEQALELLRAMVADGGSPDACNYMTVMDGLFKAGSPEVAAKLLQEMRSRGHSPDLR 928

Query: 581 TYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
           TYT +I  L        A +  + +  + +  D ++Y++++   C+  ++D
Sbjct: 929 TYTIMISGLSKAKQLPLACDYFEEMLRKNLKPDAIVYSSLIDAFCKADKVD 979



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 120/605 (19%), Positives = 232/605 (38%), Gaps = 89/605 (14%)

Query: 125  YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
            Y  ++  L K G + +A  L+ F+ E  G+ P +  +NS L    K   ++ A+      
Sbjct: 476  YNTLVTGLSKSGMVRDALGLLEFMIES-GLSPDVITFNSVLDGLCKEQRILDAHNVFKRA 534

Query: 185  DSRMVGKNEVTYTELL----KLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRL 240
              R    N VTY+ L+    K+A   + L  + ++ E   +  +++  ++   +    R+
Sbjct: 535  LERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRM 594

Query: 241  RDLKSAYETLQHMV-ALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSF--- 296
             D   A   L+ M  A  +   +  N   +G  +  RL   + L    + ++L   F   
Sbjct: 595  ED---AVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGL----LREMLEAGFHPS 647

Query: 297  ----SDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
                + + H   R+     A +++  M + G  P++ TY   +  +     +   +   +
Sbjct: 648  VVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFE 707

Query: 353  IMQQNNL-KPQDSTIATLSVECSKALELDLAEALLDQI---SRCTNPKPFSAFLAACDTM 408
             M ++ +  P     + L     KA  +D A   L+++    R  +   FS  +      
Sbjct: 708  KMARDEVVAPHVIAYSALIDGLCKAGRIDEAYEFLERMIRAGRIPDVVTFSILINGLCDA 767

Query: 409  DKPERAIKIFAKMRQK-LRPDIRTYELL---FSLFGNVNAPYEEGNMFSQVDSAKRINAI 464
             + +  +++F  M ++  + DI  Y  +   + L G  +A Y                A+
Sbjct: 768  GRIDTGLELFCGMAERGCKADIYAYNAMINAYCLKGEFSAAY----------------AL 811

Query: 465  EMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFC----DSKTPLGTPTYNTVLHSLV 520
              +M  + I  + ++   ++KAL     I E + YF     D +  +   +YNT++ SLV
Sbjct: 812  LEEMKTHGIAKNTVTHGIVIKALCGNDRIDEAVSYFHSIPEDCRDEI---SYNTLITSLV 868

Query: 521  EAQESHRAMEIFKQMKTCGIPPNAA----------------------------------- 545
             ++ S +A+E+ + M   G  P+A                                    
Sbjct: 869  ASRRSEQALELLRAMVADGGSPDACNYMTVMDGLFKAGSPEVAAKLLQEMRSRGHSPDLR 928

Query: 546  TYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLV 605
            TY IMI   S  +    A      M+R    P  + Y++LI         D+A  LL   
Sbjct: 929  TYTIMISGLSKAKQLPLACDYFEEMLRKNLKPDAIVYSSLIDAFCKADKVDDAWKLL--- 985

Query: 606  SLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFH 665
               GI   + +Y+T++   C+    D    +I +M     +P       + + YV  G  
Sbjct: 986  RSSGIEPTITMYSTMVDSLCKNRGTDKALEVIREMKSKNCEPGIHIWTSLATAYVAEGRV 1045

Query: 666  NSAME 670
            + A++
Sbjct: 1046 DEAVK 1050



 Score = 66.6 bits (161), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 64/138 (46%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TYN +++ L +A     A   F++    G  P   TY+ +ID             L+  M
Sbjct: 3   TYNVLINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLEEM 62

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
              G  P  +TY  L+  LL  G   EA +LL+ ++  G P +++ +  I+K  C++G I
Sbjct: 63  AGRGCAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKGLCKEGEI 122

Query: 631 DVIEFIIEQMHQNKVQPD 648
           +    ++++M      PD
Sbjct: 123 EAAFRVVDEMVDRGFVPD 140



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 105/477 (22%), Positives = 177/477 (37%), Gaps = 43/477 (9%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           ++S +I    +      A QL+ +M  LG + ++ TY   +  ++    + + + VL+ M
Sbjct: 545 TYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQM 604

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPER- 413
           +     P   T  TL     K   L  A  LL ++           +   C  + +  R 
Sbjct: 605 RDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRF 664

Query: 414 --AIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
             A++I   M  +   P+  TY  +           E    F +             MAR
Sbjct: 665 DEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEK-------------MAR 711

Query: 471 NNIQHSH-ISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESH 526
           + +   H I+   L+  L   G I E  ++          P   T++ +++ L +A    
Sbjct: 712 DEVVAPHVIAYSALIDGLCKAGRIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRID 771

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
             +E+F  M   G   +   YN MI+   +   F +A AL+  M   G    T+T+  +I
Sbjct: 772 TGLELFCGMAERGCKADIYAYNAMINAYCLKGEFSAAYALLEEMKTHGIAKNTVTHGIVI 831

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDV---LLYNTILKKACEKGRIDVIEFIIEQMHQN 643
           K L      DEA++         IP D    + YNT++       R +    ++  M  +
Sbjct: 832 KALCGNDRIDEAVSY-----FHSIPEDCRDEISYNTLITSLVASRRSEQALELLRAMVAD 886

Query: 644 KVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST---LEEKRSDFEDLILA 700
              PD      V  G    G    A + LQ +  R    ++ T   +    S  + L LA
Sbjct: 887 GGSPDACNYMTVMDGLFKAGSPEVAAKLLQEMRSRGHSPDLRTYTIMISGLSKAKQLPLA 946

Query: 701 EDSEAESRILQFCEDSNENL---AFTAALLQLRWCTIVGFPISWSLDRASGLEDSQT 754
            D         F E   +NL   A   + L   +C       +W L R+SG+E + T
Sbjct: 947 CD--------YFEEMLRKNLKPDAIVYSSLIDAFCKADKVDDAWKLLRSSGIEPTIT 995



 Score = 43.9 bits (102), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 33/140 (23%), Positives = 62/140 (44%), Gaps = 2/140 (1%)

Query: 546 TYNIMID-CCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDL 604
           TYN++I+  C   R   + +A     ++ GF P  +TY+ +I  L    + D+   LL+ 
Sbjct: 3   TYNVLINGLCKAGRVCDAFTAF-RKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLEE 61

Query: 605 VSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGF 664
           ++  G   + + YNT++     +GR      ++E+M  N   P+  T   +  G    G 
Sbjct: 62  MAGRGCAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKGLCKEGE 121

Query: 665 HNSAMEALQVLSMRMLCEEV 684
             +A   +  +  R    +V
Sbjct: 122 IEAAFRVVDEMVDRGFVPDV 141


>gi|422293946|gb|EKU21246.1| hypothetical protein NGA_2092600 [Nannochloropsis gaditana CCMP526]
          Length = 659

 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/350 (22%), Positives = 148/350 (42%), Gaps = 13/350 (3%)

Query: 335 IRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR--- 391
           I+A    R  R  + VL+ MQ   L+P   +  T      KA + DLA  L  +I     
Sbjct: 233 IKACGQARRWREALGVLREMQARGLRPDLVSFNTAMDALGKAGQYDLALELFTEIEDHGF 292

Query: 392 CTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGN 450
             N   ++  + AC      +RA ++  +M+   +RPD  +Y  + + F   N       
Sbjct: 293 APNLVSYNTAIHACGRAGMVDRAHELLREMQGLSVRPDSVSYNTVMAAFAKKNQWKAALE 352

Query: 451 MFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP 510
           + +++  A     ++ D+   N      +M    KA   E     L +       P    
Sbjct: 353 LLAEMKEAP---GVDPDLISYNT-----AMHVCAKAGRWERATELLTEALGQGLQP-DVV 403

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           +YNTV+H+   A E  +A+++F  M+  G+ P+  ++N  +  C+    +++A  ++  M
Sbjct: 404 SYNTVMHACGRAGEYLQALDLFGMMEEVGVAPDRVSFNTAMHACNRALKWQAALQILREM 463

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
                 P   +YT  +      G+++ AL L++ + + G+P +V  Y   +   C  G +
Sbjct: 464 EARSIAPNVKSYTIAVDACGRAGEWERALELMEEMEVRGVPANVHTYTAAMDACCRGGAV 523

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRML 680
           D +  ++E+M    V+P+  +           G  + A   L+ +  R L
Sbjct: 524 DRVLVLLEEMDGKGVEPNVVSYTIAMDAMNRVGKWDRASAVLEQMVQRGL 573



 Score = 82.4 bits (202), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 73/339 (21%), Positives = 144/339 (42%), Gaps = 15/339 (4%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           SF+  + A G+     LA +L  +++  G  P+  +Y+  I A      +    E+L+ M
Sbjct: 263 SFNTAMDALGKAGQYDLALELFTEIEDHGFAPNLVSYNTAIHACGRAGMVDRAHELLREM 322

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDK 410
           Q  +++P   +  T+    +K  +   A  LL ++       P    ++  +  C    +
Sbjct: 323 QGLSVRPDSVSYNTVMAAFAKKNQWKAALELLAEMKEAPGVDPDLISYNTAMHVCAKAGR 382

Query: 411 PERAIKIFAK-MRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
            ERA ++  + + Q L+PD+ +Y  +    G      +  ++F  ++        E+ +A
Sbjct: 383 WERATELLTEALGQGLQPDVVSYNTVMHACGRAGEYLQALDLFGMME--------EVGVA 434

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAM 529
            + +   + +M    +AL  +  ++ L +    S  P    +Y   + +   A E  RA+
Sbjct: 435 PDRVSF-NTAMHACNRALKWQAALQILREMEARSIAP-NVKSYTIAVDACGRAGEWERAL 492

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
           E+ ++M+  G+P N  TY   +D C           L+  M   G  P  ++YT  +  +
Sbjct: 493 ELMEEMEVRGVPANVHTYTAAMDACCRGGAVDRVLVLLEEMDGKGVEPNVVSYTIAMDAM 552

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
              G +D A  +L+ +   G+  D + Y T L  A   G
Sbjct: 553 NRVGKWDRASAVLEQMVQRGLRLDSVSYRTALSTAGRAG 591



 Score = 48.5 bits (114), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 33/160 (20%), Positives = 68/160 (42%), Gaps = 3/160 (1%)

Query: 513 NTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVR 572
           N VL++ +  ++  RA+ +        I  +   + + I  C   R ++ A  ++  M  
Sbjct: 198 NFVLYNCMRRRDWTRALTVLDAPL---IEVDVVGFTMAIKACGQARRWREALGVLREMQA 254

Query: 573 DGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDV 632
            G  P  +++   +  L   G +D AL L   +   G   +++ YNT +      G +D 
Sbjct: 255 RGLRPDLVSFNTAMDALGKAGQYDLALELFTEIEDHGFAPNLVSYNTAIHACGRAGMVDR 314

Query: 633 IEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEAL 672
              ++ +M    V+PD  + + V + +       +A+E L
Sbjct: 315 AHELLREMQGLSVRPDSVSYNTVMAAFAKKNQWKAALELL 354



 Score = 43.1 bits (100), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 77/346 (22%), Positives = 137/346 (39%), Gaps = 31/346 (8%)

Query: 129 MQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRM 188
           M AL K G  + A  L   + E +G  P L  YN+ + AC +   +  A+  L  M    
Sbjct: 268 MDALGKAGQYDLALELFTEI-EDHGFAPNLVSYNTAIHACGRAGMVDRAHELLREMQGLS 326

Query: 189 VGKNEVTYTELL----KLAVWQKNLSAVHEIWE------DYIKHYSLSIFSLRKFVWSFT 238
           V  + V+Y  ++    K   W+  L  + E+ E      D I + +      +   W   
Sbjct: 327 VRPDSVSYNTVMAAFAKKNQWKAALELLAEMKEAPGVDPDLISYNTAMHVCAKAGRW--- 383

Query: 239 RLRDLKSAYETLQHMVALAMMGKLYINRT---SEGRLRS--SRLDIPIPLNALPVMKVLR 293
                + A E L   +   +   +    T   + GR       LD+   +  + V    R
Sbjct: 384 -----ERATELLTEALGQGLQPDVVSYNTVMHACGRAGEYLQALDLFGMMEEVGVAPD-R 437

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
            SF+  +HAC R      A Q++ +M++  + P+  +Y   + A          +E+++ 
Sbjct: 438 VSFNTAMHACNRALKWQAALQILREMEARSIAPNVKSYTIAVDACGRAGEWERALELMEE 497

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI-SRCTNPKPFSAFLA--ACDTMDK 410
           M+   +     T       C +   +D    LL+++  +   P   S  +A  A + + K
Sbjct: 498 MEVRGVPANVHTYTAAMDACCRGGAVDRVLVLLEEMDGKGVEPNVVSYTIAMDAMNRVGK 557

Query: 411 PERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQV 455
            +RA  +  +M Q+ LR D  +Y    S  G   A  EEG   +++
Sbjct: 558 WDRASAVLEQMVQRGLRLDSVSYRTALSTAG--RAGDEEGERLTKI 601


>gi|225445222|ref|XP_002280919.1| PREDICTED: pentatricopeptide repeat-containing protein At5g21222
           [Vitis vinifera]
 gi|297738818|emb|CBI28063.3| unnamed protein product [Vitis vinifera]
          Length = 636

 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 81/418 (19%), Positives = 179/418 (42%), Gaps = 21/418 (5%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ ++ A  R +       L+ +++  GL+P S  ++  I A      ++  M++ + M
Sbjct: 108 TYTTLLAALTRQKRFKSIPSLISKLEKNGLKPDSVFFNAMINAFSESGNVKEAMKIFRKM 167

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDK 410
           +    KP  ST  TL      A   +    LLD +S+  N KP    F++ + A     +
Sbjct: 168 KDRGCKPTTSTFNTLIKGYGNAGMPEECLKLLDLMSQEENVKPNDRTFNSLIRAWCNKKR 227

Query: 411 PERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
              A  +  KM    L+PD+ TY  L                ++Q     R   + ++M 
Sbjct: 228 ITEAWNVVYKMAASGLQPDVVTYNTL-------------ARAYAQNGETSRAEGMILEMQ 274

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPT---YNTVLHSLVEAQESH 526
            N +  +  +   ++     EG +++ +++    +     P    +N+++   ++  ++ 
Sbjct: 275 NNRVMPNERTCGIIINGYCKEGKMKDALRFLYRMRNYGVHPNLVIFNSLIKGFLDITDTD 334

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
              E    M+  G+ P+  T++ +++  S +        +   MV+ G  P    ++ L 
Sbjct: 335 GVDEALTLMEEFGVKPDVVTFSTIMNAWSSVGLMDKCQEIFDDMVKAGIEPDIHAFSILA 394

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
           K  +  G+ ++A +LL  +   G+  +V+++ TI+   C  G+++    + E+M +  + 
Sbjct: 395 KGYVRAGEPEKAESLLTAMGKSGVQPNVVIFTTIISGWCSAGKMEYASRVYEKMCEMGIC 454

Query: 647 PDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDFEDLILAEDSE 704
           P+  T   +  GY        A E LQ++  + +    ST++     +  L LA +++
Sbjct: 455 PNLKTFETLIWGYGEAKEPQKAEELLQIMEQKGVAPVKSTIQLVADAWHALGLANEAK 512



 Score = 50.1 bits (118), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/148 (21%), Positives = 69/148 (46%), Gaps = 1/148 (0%)

Query: 515 VLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDG 574
           +++ L+E  +   A  IF  +   G  P   TY  ++   +  + FKS  +L+S + ++G
Sbjct: 77  LMNILIEKGKPQEAQLIFNSLTEEGHRPTLITYTTLLAALTRQKRFKSIPSLISKLEKNG 136

Query: 575 FYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIE 634
             P ++ + A+I    + G+  EA+ +   +   G       +NT++K     G  +   
Sbjct: 137 LKPDSVFFNAMINAFSESGNVKEAMKIFRKMKDRGCKPTTSTFNTLIKGYGNAGMPEECL 196

Query: 635 FIIEQMHQNK-VQPDPSTCHFVFSGYVN 661
            +++ M Q + V+P+  T + +   + N
Sbjct: 197 KLLDLMSQEENVKPNDRTFNSLIRAWCN 224



 Score = 46.6 bits (109), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 26/116 (22%), Positives = 50/116 (43%)

Query: 561 KSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTI 620
           + A  + + +  +G  P  +TYT L+  L     F    +L+  +   G+  D + +N +
Sbjct: 88  QEAQLIFNSLTEEGHRPTLITYTTLLAALTRQKRFKSIPSLISKLEKNGLKPDSVFFNAM 147

Query: 621 LKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
           +    E G +     I  +M     +P  ST + +  GY N G     ++ L ++S
Sbjct: 148 INAFSESGNVKEAMKIFRKMKDRGCKPTTSTFNTLIKGYGNAGMPEECLKLLDLMS 203



 Score = 45.4 bits (106), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 50/254 (19%), Positives = 101/254 (39%), Gaps = 31/254 (12%)

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
           M+   +  N +   +++   CK G +++A   +Y +   YG++P L ++NS +     + 
Sbjct: 273 MQNNRVMPNERTCGIIINGYCKEGKMKDALRFLYRM-RNYGVHPNLVIFNSLIKGFLDIT 331

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRK 232
                +  L LM+   V  + VT++ ++        +    EI++D +            
Sbjct: 332 DTDGVDEALTLMEEFGVKPDVVTFSTIMNAWSSVGLMDKCQEIFDDMV------------ 379

Query: 233 FVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVL 292
                      K+  E   H  A +++ K Y+ R  E     S L         P + + 
Sbjct: 380 -----------KAGIEPDIH--AFSILAKGYV-RAGEPEKAESLLTAMGKSGVQPNVVI- 424

Query: 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
              F+ +I           A ++  +M  +G+ P+  T++  I      +  +   E+L+
Sbjct: 425 ---FTTIISGWCSAGKMEYASRVYEKMCEMGICPNLKTFETLIWGYGEAKEPQKAEELLQ 481

Query: 353 IMQQNNLKPQDSTI 366
           IM+Q  + P  STI
Sbjct: 482 IMEQKGVAPVKSTI 495


>gi|302770783|ref|XP_002968810.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
 gi|300163315|gb|EFJ29926.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
          Length = 545

 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 90/401 (22%), Positives = 152/401 (37%), Gaps = 17/401 (4%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +F+ VI+   R +    A  ++ +    G +P   TY+ FI  +     + +  ++LK M
Sbjct: 9   AFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQLLKKM 68

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKP--- 411
            +    P   T   L     KA  LD A A+L+Q+    N      +    D + K    
Sbjct: 69  DEKKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDGLSKAGRV 128

Query: 412 ERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           E A +IF  M     RPD   Y  L         P E   ++ + ++ K       D+  
Sbjct: 129 EEARRIFVDMLGNGCRPDAFVYTALIKGLCKSGKPEEAYALYKEANARKHHATAVPDV-- 186

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLG----TPTYNTVLHSLVEAQESH 526
                  ++  +L+  L   G I E  Q F D     G      TY +++  L +     
Sbjct: 187 -------VTYTSLIDGLCKAGRILEARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGRVE 239

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
              E F +M+  G  P+A TY  +ID     +    A  +   M++ G    T+TY  ++
Sbjct: 240 EGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIIL 299

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
             L   G   EA      +   G    V+ Y+ ++   C +G +     +  +M     +
Sbjct: 300 DGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCE 359

Query: 647 PDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTL 687
           P+  + + +  G    G    A    + L  R LC +V T 
Sbjct: 360 PNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYTF 400



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 87/458 (18%), Positives = 172/458 (37%), Gaps = 61/458 (13%)

Query: 269 EGRLRSSRLDIPIPL-------NALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQS 321
           +G L++ RLD  + +          P +K    +++ VI    +      A ++ + M  
Sbjct: 85  DGLLKAGRLDEAMAVLEQMVEKGNSPTLK----TYTVVIDGLSKAGRVEEARRIFVDMLG 140

Query: 322 LGLQPSSHTYDGFIRAIVSDRGLRNGM--EVLKIMQQNNLK-------PQDSTIATLSVE 372
            G +P +  Y   I+ +      ++G   E   + ++ N +       P   T  +L   
Sbjct: 141 NGCRPDAFVYTALIKGLC-----KSGKPEEAYALYKEANARKHHATAVPDVVTYTSLIDG 195

Query: 373 CSKALELDLAEALLDQ--ISRCTNPKP--FSAFLAACDTMDKPERAIKIFAKMRQK-LRP 427
             KA  +  A  + D   + R   P    +++ +     + + E   + F +MR +   P
Sbjct: 196 LCKAGRILEARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEP 255

Query: 428 DIRTYELLFSLF-------------------GNVNAPYEEGNMFSQVDSAKRIN---AIE 465
           D  TY  L   F                   G V +      +   +  A R+    A  
Sbjct: 256 DAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATF 315

Query: 466 MDMARNNIQHSHISMKNLLKALGAEGMIR---ELIQYFCDSKTPLGTPTYNTVLHSLVEA 522
           + M       + ++   L+    +EG +    EL +   D        +YN ++  L  A
Sbjct: 316 LAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRA 375

Query: 523 QESHRAMEIFKQMKTCGIPPNAATYNIMI-DCCSIIRCFKSASALVSMMVRDGFYPQTMT 581
            +  +A   F+++    + P+  T+N  +   C  +        L   MV  G  P   +
Sbjct: 376 GKLAKAYFYFEKLLQRRLCPDVYTFNAFLHGLCQRLDTVSDGVELFESMVSQGTSPNLHS 435

Query: 582 YTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMH 641
           Y+ L+  +   G  + AL +   +   G+  DV+++NT+++  C  GR+D    +  ++ 
Sbjct: 436 YSILMDGICRAGGLEVALEIFREMVSRGVAPDVVVFNTLIRWLCIAGRVDEALEVFREL- 494

Query: 642 QNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRM 679
           + +  PD  +   +  G   C      ME  ++LS  M
Sbjct: 495 ERRSAPDAWSYWSLLDGLSRC----ERMEEARLLSFHM 528



 Score = 41.6 bits (96), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 43/97 (44%)

Query: 577 PQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFI 636
           P  + +T +I  L      DEA ++L+     G   D + YN  +   C+  R+D    +
Sbjct: 5   PDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQL 64

Query: 637 IEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           +++M + K  P   T   +  G +  G  + AM  L+
Sbjct: 65  LKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAVLE 101


>gi|224134148|ref|XP_002321748.1| predicted protein [Populus trichocarpa]
 gi|222868744|gb|EEF05875.1| predicted protein [Populus trichocarpa]
          Length = 1041

 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 129/608 (21%), Positives = 239/608 (39%), Gaps = 72/608 (11%)

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
           MEEK    +   Y +++  LC+ G ++EA  L   + ++ G+   +  Y+  +    K  
Sbjct: 262 MEEKGCSPSLVTYNVVIGGLCRAGEVDEAFELKKLM-DKKGLVADVFTYSILIDGFGKQK 320

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYSLSIFSLR 231
               A L L+ M S+ +    V YT L+   + Q +      + E+ + +   L++F+  
Sbjct: 321 RCTEAKLMLEEMFSKGLKPGHVAYTALIDGFMRQGDSGEAFRVKEEMLARGVKLNLFTYN 380

Query: 232 KFVWSFTRLRDLKSAYETLQHMVALAMMGKLYI-NRTSEGRLR---SSRLDIPIPLNALP 287
             V    +  D++ A   L  M+ + +       N   EG L+   +SR+      + L 
Sbjct: 381 ALVKGVCKFGDMEKADALLNEMIMVGIKPDTQTYNNMIEGYLKEQNTSRVK-----DLLS 435

Query: 288 VMKVLRWSFSDVIHACGRTQNSGL--------AEQLMLQMQSLGLQPSSHTYDGFIRAIV 339
            MK  + +     + CG   N GL        A ++   M SLG++P++  Y   I+  V
Sbjct: 436 EMK--KSNLVPTAYTCGMIIN-GLCRHGSIEDASRVFEIMVSLGVKPNAVIYTTLIKGHV 492

Query: 340 SDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLA-EALLDQISRCTNPKPF 398
            +   +  + +LK+M +  ++P      ++ +   K+ +++ A + L++ I R   P  +
Sbjct: 493 QEGRFQEAVRILKVMDKKGVQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNVY 552

Query: 399 S-------------------------------------AFLAACDTMDKPERAIKIFAKM 421
           +                                     A +           A  IF  M
Sbjct: 553 TYGALIHGYCKSGEMQVADRYFKEMLGCGIAPNDVVCTALIDGYCKEGSTTEATSIFRCM 612

Query: 422 -RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISM 480
             + + PD+RTY  L      ++     G +   ++       +E  +  +   ++ I +
Sbjct: 613 LGRSVHPDVRTYSAL------IHGLLRNGKLQGAMELLSEF--LEKGLVPDVFTYNSI-I 663

Query: 481 KNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGI 540
               K  G  G   +L +Y C         TYN +++ L +A E  RA E+F  +   G+
Sbjct: 664 SGFCKQ-GGIGKAFQLHEYMCQKGISPNIITYNALINGLCKAGEIERARELFDGIPGKGL 722

Query: 541 PPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALN 600
             NA TY  +ID          A  L   M   G  P +  Y+ALI      G+ ++AL+
Sbjct: 723 AHNAVTYATIIDGYCKSGNLSKAFRLFDEMTLKGVPPDSFVYSALIDGCRKEGNTEKALS 782

Query: 601 LLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYV 660
           L  L S++         N ++   C+ G++     ++E M    V+PD  T   +   + 
Sbjct: 783 LF-LESVQKGFASTSSLNALMDGFCKSGKVIEANQLLEDMVDKHVKPDHVTYTILIDYHC 841

Query: 661 NCGFHNSA 668
             GF   A
Sbjct: 842 KTGFLKEA 849



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 117/556 (21%), Positives = 220/556 (39%), Gaps = 44/556 (7%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y  ++ A  + G  +E   L++ + E+ G  P L  YN  +G   +   +  A     LM
Sbjct: 239 YTHLINAHFRAGNAKEGKRLLFEMEEK-GCSPSLVTYNVVIGGLCRAGEVDEAFELKKLM 297

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWED-YIKHYSLSIFSLRKFVWSFTRLRDL 243
           D + +  +  TY+ L+     QK  +    + E+ + K       +    +  F R  D 
Sbjct: 298 DKKGLVADVFTYSILIDGFGKQKRCTEAKLMLEEMFSKGLKPGHVAYTALIDGFMRQGDS 357

Query: 244 KSAYETLQHMVALAMMGKLYI-NRTSEGRLRSSRLDIPIPLNALPVMKVLR---WSFSDV 299
             A+   + M+A  +   L+  N   +G  +   ++    L    +M  ++    +++++
Sbjct: 358 GEAFRVKEEMLARGVKLNLFTYNALVKGVCKFGDMEKADALLNEMIMVGIKPDTQTYNNM 417

Query: 300 IHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNL 359
           I    + QN+   + L+ +M+   L P+++T    I  +     + +   V +IM    +
Sbjct: 418 IEGYLKEQNTSRVKDLLSEMKKSNLVPTAYTCGMIINGLCRHGSIEDASRVFEIMVSLGV 477

Query: 360 KPQDSTIATLSVECSKALELDLAEALLDQISR--------CTNPKPFSAFLAACDTMDKP 411
           KP      TL     +      A  +L  + +        C N    S  +  C +    
Sbjct: 478 KPNAVIYTTLIKGHVQEGRFQEAVRILKVMDKKGVQPDVLCYN----SVIIGLCKSRKME 533

Query: 412 ERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471
           E    +   + + L+P++ TY  L      ++   + G M  QV        +   +A N
Sbjct: 534 EAKDYLVEMIERGLKPNVYTYGAL------IHGYCKSGEM--QVADRYFKEMLGCGIAPN 585

Query: 472 NIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLG------TPTYNTVLHSLVEAQES 525
           ++  +      L+     EG   E    F   +  LG        TY+ ++H L+   + 
Sbjct: 586 DVVCTA-----LIDGYCKEGSTTEATSIF---RCMLGRSVHPDVRTYSALIHGLLRNGKL 637

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
             AME+  +    G+ P+  TYN +I           A  L   M + G  P  +TY AL
Sbjct: 638 QGAMELLSEFLEKGLVPDVFTYNSIISGFCKQGGIGKAFQLHEYMCQKGISPNIITYNAL 697

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           I  L   G+ + A  L D +  +G+ H+ + Y TI+   C+ G +     + ++M    V
Sbjct: 698 INGLCKAGEIERARELFDGIPGKGLAHNAVTYATIIDGYCKSGNLSKAFRLFDEMTLKGV 757

Query: 646 QPDPSTCHFVFSGYVN 661
            PD     FV+S  ++
Sbjct: 758 PPDS----FVYSALID 769



 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 83/377 (22%), Positives = 159/377 (42%), Gaps = 55/377 (14%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           ++++ +I+A  R  N+   ++L+ +M+  G  PS  TY+  I  +     +    E+ K+
Sbjct: 237 YTYTHLINAHFRAGNAKEGKRLLFEMEEKGCSPSLVTYNVVIGGLCRAGEVDEAFELKKL 296

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPER 413
           M +  L    + + T S+         L +    Q  RCT  K                 
Sbjct: 297 MDKKGLV---ADVFTYSI---------LIDGFGKQ-KRCTEAKLMLE------------- 330

Query: 414 AIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNI 473
             ++F+K    L+P    Y  L   F              Q DS +     E  +AR  +
Sbjct: 331 --EMFSK---GLKPGHVAYTALIDGF------------MRQGDSGEAFRVKEEMLARG-V 372

Query: 474 QHSHISMKNLLKAL-------GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESH 526
           + +  +   L+K +        A+ ++ E+I       T     TYN ++   ++ Q + 
Sbjct: 373 KLNLFTYNALVKGVCKFGDMEKADALLNEMIMVGIKPDTQ----TYNNMIEGYLKEQNTS 428

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
           R  ++  +MK   + P A T  ++I+        + AS +  +MV  G  P  + YT LI
Sbjct: 429 RVKDLLSEMKKSNLVPTAYTCGMIINGLCRHGSIEDASRVFEIMVSLGVKPNAVIYTTLI 488

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
           K  +  G F EA+ +L ++  +G+  DVL YN+++   C+  +++  +  + +M +  ++
Sbjct: 489 KGHVQEGRFQEAVRILKVMDKKGVQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLK 548

Query: 647 PDPSTCHFVFSGYVNCG 663
           P+  T   +  GY   G
Sbjct: 549 PNVYTYGALIHGYCKSG 565



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 115/552 (20%), Positives = 213/552 (38%), Gaps = 62/552 (11%)

Query: 111  RMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAK 170
            ++M++K +  +  CY  ++  LCK   +EEA + +  + ER G+ P +  Y + +    K
Sbjct: 505  KVMDKKGVQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIER-GLKPNVYTYGALIHGYCK 563

Query: 171  LHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLS-IFS 229
               M  A+     M    +  N+V  T L+                + Y K  S +   S
Sbjct: 564  SGEMQVADRYFKEMLGCGIAPNDVVCTALI----------------DGYCKEGSTTEATS 607

Query: 230  LRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVM 289
            + + +   +   D+++ Y  L H                 G LR+ +L   + L +  + 
Sbjct: 608  IFRCMLGRSVHPDVRT-YSALIH-----------------GLLRNGKLQGAMELLSEFLE 649

Query: 290  KVLR---WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRN 346
            K L    ++++ +I    +    G A QL   M   G+ P+  TY+  I  +     +  
Sbjct: 650  KGLVPDVFTYNSIISGFCKQGGIGKAFQLHEYMCQKGISPNIITYNALINGLCKAGEIER 709

Query: 347  GMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQIS-RCTNPKPF--SAFLA 403
              E+   +    L     T AT+     K+  L  A  L D+++ +   P  F  SA + 
Sbjct: 710  ARELFDGIPGKGLAHNAVTYATIIDGYCKSGNLSKAFRLFDEMTLKGVPPDSFVYSALID 769

Query: 404  ACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINA 463
             C      E+A+ +F +  QK      +   L   F                 S K I A
Sbjct: 770  GCRKEGNTEKALSLFLESVQKGFASTSSLNALMDGF---------------CKSGKVIEA 814

Query: 464  IEM--DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHS 518
             ++  DM   +++  H++   L+      G ++E  Q+F D +     P   TY  +L  
Sbjct: 815  NQLLEDMVDKHVKPDHVTYTILIDYHCKTGFLKEAEQFFVDMQKRNLMPNALTYTALLSG 874

Query: 519  LVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQ 578
               A        +F +M    I P+  T+++MID             LV  M++ G    
Sbjct: 875  YNMAGRRSEMFALFDEMIAKDIEPDGVTWSVMIDAHLKEGDHVKTLKLVDDMLKKGGNVS 934

Query: 579  TMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIE 638
                  LI  L       E L +L+ +  +G+   +   +T+++   + G++D    +++
Sbjct: 935  KNVCHVLIDPLCRKEHVSEVLKVLEKIEEQGLNLSLATCSTLVRCFHKAGKMDGAARVLK 994

Query: 639  QMHQNKVQPDPS 650
             M + K  PD +
Sbjct: 995  SMVRFKWVPDST 1006



 Score = 62.4 bits (150), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 98/438 (22%), Positives = 169/438 (38%), Gaps = 64/438 (14%)

Query: 270 GRLRSSRLDIPIPLNALPVMKVLR---WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQP 326
           G  R+  +D    L  L   K L    +++S +I   G+ +    A+ ++ +M S GL+P
Sbjct: 280 GLCRAGEVDEAFELKKLMDKKGLVADVFTYSILIDGFGKQKRCTEAKLMLEEMFSKGLKP 339

Query: 327 SSHTY----DGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLA 382
               Y    DGF+R   S    R   E+L    + NL   ++ +  +     K  +++ A
Sbjct: 340 GHVAYTALIDGFMRQGDSGEAFRVKEEMLARGVKLNLFTYNALVKGVC----KFGDMEKA 395

Query: 383 EALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNV 442
           +ALL+++                               +   ++PD +TY  +       
Sbjct: 396 DALLNEM-------------------------------IMVGIKPDTQTYNNMI------ 418

Query: 443 NAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCD 502
                EG +  Q  +  R+  +  +M ++N+  +  +   ++  L   G I +  + F +
Sbjct: 419 -----EGYLKEQ--NTSRVKDLLSEMKKSNLVPTAYTCGMIINGLCRHGSIEDASRVF-E 470

Query: 503 SKTPLGTP----TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYN-IMIDCCSII 557
               LG       Y T++   V+      A+ I K M   G+ P+   YN ++I  C   
Sbjct: 471 IMVSLGVKPNAVIYTTLIKGHVQEGRFQEAVRILKVMDKKGVQPDVLCYNSVIIGLCKSR 530

Query: 558 RCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGI-PHDVLL 616
           +  ++   LV M+ R G  P   TY ALI      G+   A      +   GI P+DV+ 
Sbjct: 531 KMEEAKDYLVEMIER-GLKPNVYTYGALIHGYCKSGEMQVADRYFKEMLGCGIAPNDVVC 589

Query: 617 YNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
              ++   C++G       I   M    V PD  T   +  G +  G    AME L    
Sbjct: 590 -TALIDGYCKEGSTTEATSIFRCMLGRSVHPDVRTYSALIHGLLRNGKLQGAMELLSEFL 648

Query: 677 MRMLCEEVSTLEEKRSDF 694
            + L  +V T     S F
Sbjct: 649 EKGLVPDVFTYNSIISGF 666



 Score = 60.5 bits (145), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 104/561 (18%), Positives = 216/561 (38%), Gaps = 46/561 (8%)

Query: 127 LMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDS 186
           +++  LC+ G +E+AS  ++ +    G+ P   +Y + +    +      A   L +MD 
Sbjct: 451 MIINGLCRHGSIEDASR-VFEIMVSLGVKPNAVIYTTLIKGHVQEGRFQEAVRILKVMDK 509

Query: 187 RMVGKNEVTYTE-LLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKS 245
           + V  + + Y   ++ L   +K   A   + E   +    ++++    +  + +  +++ 
Sbjct: 510 KGVQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGALIHGYCKSGEMQV 569

Query: 246 AYETLQHMVALAMM-----------GKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRW 294
           A    + M+   +            G      T+E    +S     +  +  P ++    
Sbjct: 570 ADRYFKEMLGCGIAPNDVVCTALIDGYCKEGSTTEA---TSIFRCMLGRSVHPDVR---- 622

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           ++S +IH   R      A +L+ +    GL P   TY+  I       G+    ++ + M
Sbjct: 623 TYSALIHGLLRNGKLQGAMELLSEFLEKGLVPDVFTYNSIISGFCKQGGIGKAFQLHEYM 682

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQI---SRCTNPKPFSAFLAACDTMDKP 411
            Q  + P   T   L     KA E++ A  L D I       N   ++  +         
Sbjct: 683 CQKGISPNIITYNALINGLCKAGEIERARELFDGIPGKGLAHNAVTYATIIDGYCKSGNL 742

Query: 412 ERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
            +A ++F +M  K + PD   Y  L      ++   +EGN  ++   +  + +++   A 
Sbjct: 743 SKAFRLFDEMTLKGVPPDSFVYSAL------IDGCRKEGN--TEKALSLFLESVQKGFA- 793

Query: 471 NNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHR 527
                S  S+  L+      G + E   L++   D        TY  ++    +      
Sbjct: 794 -----STSSLNALMDGFCKSGKVIEANQLLEDMVDKHVKPDHVTYTILIDYHCKTGFLKE 848

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A + F  M+   + PNA TY  ++   ++        AL   M+     P  +T++ +I 
Sbjct: 849 AEQFFVDMQKRNLMPNALTYTALLSGYNMAGRRSEMFALFDEMIAKDIEPDGVTWSVMID 908

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
             L  GD  + L L+D +  +G      + + ++   C K  +  +  ++E++ +  +  
Sbjct: 909 AHLKEGDHVKTLKLVDDMLKKGGNVSKNVCHVLIDPLCRKEHVSEVLKVLEKIEEQGLNL 968

Query: 648 DPSTCHFVFSGYVNCGFHNSA 668
             +TC    S  V C FH + 
Sbjct: 969 SLATC----STLVRC-FHKAG 984



 Score = 48.1 bits (113), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 39/184 (21%), Positives = 76/184 (41%), Gaps = 3/184 (1%)

Query: 483 LLKALGAEGMIRELIQYFCDSKTP---LGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCG 539
           L+     +G+  E + +F  +K     +G    N +L  L++A +       +  M    
Sbjct: 172 LIDGYKKKGLFDEAVSFFLGAKRNGFVVGLLCCNGLLSDLLKANKLELFWRFYNGMLEAN 231

Query: 540 IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEAL 599
           +  +  TY  +I+        K    L+  M   G  P  +TY  +I  L   G+ DEA 
Sbjct: 232 VLHDVYTYTHLINAHFRAGNAKEGKRLLFEMEEKGCSPSLVTYNVVIGGLCRAGEVDEAF 291

Query: 600 NLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
            L  L+  +G+  DV  Y+ ++    ++ R    + ++E+M    ++P       +  G+
Sbjct: 292 ELKKLMDKKGLVADVFTYSILIDGFGKQKRCTEAKLMLEEMFSKGLKPGHVAYTALIDGF 351

Query: 660 VNCG 663
           +  G
Sbjct: 352 MRQG 355


>gi|359485848|ref|XP_002267947.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 1011

 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 117/550 (21%), Positives = 212/550 (38%), Gaps = 65/550 (11%)

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFL-GACAKL 171
           M EK    N   Y +++  LC+   L+EA  L   + ++ G+ P L  Y+  + G C + 
Sbjct: 241 MGEKGCSPNLVTYNVIIGGLCRARLLDEAIELKRSMVDK-GLVPDLYTYDILINGFCMEK 299

Query: 172 HSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLR 231
            S     + L+++D  +     +TY  L+                               
Sbjct: 300 RSREAKLMLLEMIDVGL-KPEPITYNALID------------------------------ 328

Query: 232 KFVWSFTRLRDLKSAYETLQHMVALAMMGKLYI-NRTSEGRLRSSRLDIPIPLNALPVMK 290
                F R  D++ A+     MVA  +   L I N    G  ++ +++      AL +M+
Sbjct: 329 ----GFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKME-----KALEIMQ 379

Query: 291 VL--------RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDR 342
            +          ++S +I    R QN   A +L+ +M+   L P+  TY   I  +    
Sbjct: 380 EMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCG 439

Query: 343 GLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI-SRCTNPKPF--- 398
            L+    +L+ M  N LKP      TL    +K   ++ +  +L+++  +   P  F   
Sbjct: 440 NLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYN 499

Query: 399 SAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSA 458
           S  +  C      E    +   + ++LRP+  TY      +            F+++ S 
Sbjct: 500 SLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSC 559

Query: 459 KRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHS 518
             +  + +  A   +   H    N+ +A         + ++    +      TY+ ++H 
Sbjct: 560 GVLPNVGIYTA---LIEGHCKEGNVTEAF-------SVFRFILSRRVLQDVQTYSVLIHG 609

Query: 519 LVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQ 578
           L    + H A  IF +++  G+ PNA TYN +I           AS L+  M   G  P 
Sbjct: 610 LSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPD 669

Query: 579 TMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIE 638
            +TY  LI  L   G+ + A NL D +   G+  + + Y  ++   C+         ++E
Sbjct: 670 IVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLE 729

Query: 639 QMHQNKVQPD 648
           +M    V PD
Sbjct: 730 EMLLRGVPPD 739



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 112/569 (19%), Positives = 220/569 (38%), Gaps = 67/569 (11%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHA-NLCLDL 183
           Y  M+ A CK G +++A  ++  +GE+ G  P L  YN  +G   +   +  A  L   +
Sbjct: 218 YTNMISAHCKVGNVKDAKRVLLEMGEK-GCSPNLVTYNVIIGGLCRARLLDEAIELKRSM 276

Query: 184 MDSRMVGKNEVTYTELLK-LAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRD 242
           +D  +V  +  TY  L+    + +++  A   + E           +    +  F R  D
Sbjct: 277 VDKGLV-PDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGD 335

Query: 243 LKSAYETLQHMVALAMMGKLYI-NRTSEGRLRSSRLDIPIPLNALPVMKVL--------R 293
           ++ A+     MVA  +   L I N    G  ++ +++      AL +M+ +         
Sbjct: 336 IEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKME-----KALEIMQEMMEKGVEPDS 390

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
            ++S +I    R QN   A +L+ +M+   L P+  TY   I  +     L+    +L+ 
Sbjct: 391 QTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILRE 450

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI-SRCTNPKPF---SAFLAACDTMD 409
           M  N LKP      TL    +K   ++ +  +L+++  +   P  F   S  +  C    
Sbjct: 451 MVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKR 510

Query: 410 KPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
             E    +   + ++LRP+  TY      +            F+++ S   +  + +  A
Sbjct: 511 MEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTA 570

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAM 529
              +   H    N+ +A         + ++    +      TY+ ++H L    + H A 
Sbjct: 571 ---LIEGHCKEGNVTEAF-------SVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAF 620

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
            IF +++                                     G  P   TY +LI   
Sbjct: 621 GIFSELQ-----------------------------------EKGLLPNAFTYNSLISGS 645

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649
              G+ D+A  LL+ + ++GI  D++ YN ++   C+ G I+  + + + +    + P+ 
Sbjct: 646 CKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNC 705

Query: 650 STCHFVFSGYVNCGFHNSAMEALQVLSMR 678
            T   +  GY       +A + L+ + +R
Sbjct: 706 VTYAAMVDGYCKSKNPTAAFQLLEEMLLR 734



 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 90/176 (51%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TYN ++  L  A+    A+E+ + M   G+ P+  TY+I+I+   + +  + A  ++  M
Sbjct: 252 TYNVIIGGLCRARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEM 311

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           +  G  P+ +TY ALI   +  GD ++A  + D +   GI  +++++NT+L   C+ G++
Sbjct: 312 IDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKM 371

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           +    I+++M +  V+PD  T   +  G+        A E L  +  R L   V T
Sbjct: 372 EKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLT 427



 Score = 79.3 bits (194), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 128/636 (20%), Positives = 241/636 (37%), Gaps = 79/636 (12%)

Query: 59  IVDALCRGER-SRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKE 117
           +++  CRG+  +RA  LL  +     +     +  I+N   R  +        R M    
Sbjct: 396 LIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNG 455

Query: 118 IGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHA 177
           +  N   Y  +M A  K G +EE+  ++  + E+ GI P +  YNS +    K   M  A
Sbjct: 456 LKPNAVVYTTLMTAHAKEGRVEESRMILERMREQ-GILPDVFCYNSLIIGFCKAKRMEEA 514

Query: 178 NLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSF 237
              L  M  R +  N  TY                                    F+  +
Sbjct: 515 RTYLMEMLERRLRPNAHTYG----------------------------------AFIDGY 540

Query: 238 TRLRDLKSAYETLQHMVALAMMGKLYI-NRTSEGRLRSSRLDIPIPLNALPVMKVLRW-- 294
           ++  +++ A      M++  ++  + I     EG  +          N      V R+  
Sbjct: 541 SKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEG--------NVTEAFSVFRFIL 592

Query: 295 ---------SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLR 345
                    ++S +IH   R      A  +  ++Q  GL P++ TY+  I        + 
Sbjct: 593 SRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVD 652

Query: 346 NGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI-SRCTNPK--PFSAFL 402
              ++L+ M    + P   T   L     KA E++ A+ L D I  R   P    ++A +
Sbjct: 653 KASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMV 712

Query: 403 AACDTMDKPERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEG-NMFSQVDSAKR 460
                   P  A ++  +M  + + PD   Y ++ + F      +E+  ++F ++     
Sbjct: 713 DGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILN-FCCKEEKFEKALDLFQEM----- 766

Query: 461 INAIEMDMARNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLH 517
              +E   A      S +S   L++     G ++E   L++   + +      TY +++ 
Sbjct: 767 ---LEKGFA------STVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLID 817

Query: 518 SLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYP 577
              +A     A  ++ +M+   + P A TY  ++     I      SAL   MV  G  P
Sbjct: 818 HNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEP 877

Query: 578 QTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFII 637
             MTY  +I      G+  EA  L D + ++G+P  V  Y+ +++  C+K     +  ++
Sbjct: 878 DKMTYYVMIDAYCREGNVMEACKLKDEILVKGMPMSVAAYDALIQALCKKEEFFEVLKLL 937

Query: 638 EQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
            ++ ++  +    TC  +  G+   G  + A E L+
Sbjct: 938 NEIGESGFRLGLPTCSVIARGFQIAGNMDEAAEVLR 973



 Score = 77.0 bits (188), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 121/580 (20%), Positives = 235/580 (40%), Gaps = 65/580 (11%)

Query: 121 NNKCYLLMMQALCKGGYLEEASNLIYFLGER-YGIYPILPVYNSFLGACAKLHSMVHANL 179
           N+  + ++M +  K G+L EA N+  FLG + +   P L   NS LG   K + +     
Sbjct: 144 NSVIFDMLMDSYRKMGFLVEAVNV--FLGPKNFEFRPSLLSCNSLLGDLLKGNKVELFWK 201

Query: 180 CLDLMDSRMVGKNEVTYTELLKLAVWQKNLS-AVHEIWEDYIKHYSLSIFSLRKFVWSFT 238
             D M +  V  +  TYT ++       N+  A   + E   K  S ++ +    +    
Sbjct: 202 VFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKGCSPNLVTYNVIIGGLC 261

Query: 239 RLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSD 298
           R R L  A E  + MV   ++  LY                               ++  
Sbjct: 262 RARLLDEAIELKRSMVDKGLVPDLY-------------------------------TYDI 290

Query: 299 VIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTY----DGFIRAIVSDRGLRNGMEVLKIM 354
           +I+     + S  A+ ++L+M  +GL+P   TY    DGF+R    ++  R   E++   
Sbjct: 291 LINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACG 350

Query: 355 QQNNLKPQDSTIATL--SVECSKALELDLAEALLDQISRCTNP--KPFSAFLAACDTMDK 410
            + NL   ++ +  +  + +  KALE+     + + + +   P  + +S  +        
Sbjct: 351 IEANLIIWNTLLNGVCKAGKMEKALEI-----MQEMMEKGVEPDSQTYSLLIEGHCRGQN 405

Query: 411 PERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
             RA ++  +M++ KL P + TY ++      +N     GN+       +  NAI  +M 
Sbjct: 406 MARAFELLDEMKKRKLAPTVLTYSVI------INGLCRCGNL-------QGTNAILREMV 452

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESH 526
            N ++ + +    L+ A   EG + E   +++   +         YN+++    +A+   
Sbjct: 453 MNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRME 512

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
            A     +M    + PNA TY   ID  S     + A    + M+  G  P    YTALI
Sbjct: 513 EARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALI 572

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
           +     G+  EA ++   +    +  DV  Y+ ++      G++     I  ++ +  + 
Sbjct: 573 EGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLL 632

Query: 647 PDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           P+  T + + SG    G  + A + L+ + ++ +  ++ T
Sbjct: 633 PNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVT 672


>gi|242093812|ref|XP_002437396.1| hypothetical protein SORBIDRAFT_10g026180 [Sorghum bicolor]
 gi|241915619|gb|EER88763.1| hypothetical protein SORBIDRAFT_10g026180 [Sorghum bicolor]
          Length = 786

 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/281 (25%), Positives = 129/281 (45%), Gaps = 22/281 (7%)

Query: 380 DLAEALLDQI-----SRCTNPKPFSAFLAACDTMDKPERAIKIFAKMR-QKLRPDIRTYE 433
           D   ALLD++     SR  + + ++  L A     + ERA+++FA++R Q + P + TY 
Sbjct: 154 DAVCALLDEMPLPPGSRL-DVRAYTTVLHALSRAGRYERAVELFAELRRQGVAPTLVTYN 212

Query: 434 LLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMI 493
           ++  ++G +              S  RI A+  +M    ++    +   ++ A   +G++
Sbjct: 213 VVLDVYGRMG------------RSWPRIVALLDEMRAAGVEPDDFTASTVIAACCRDGLV 260

Query: 494 RELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIM 550
            E + +F D K    TP   TYN +L    +A     A+ + K+M+  G  P+A TYN +
Sbjct: 261 DEAVAFFEDLKARGHTPCVVTYNALLQVFGKAGNYTEALRVLKEMEQDGCQPDAVTYNEL 320

Query: 551 IDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGI 610
               +    ++ A+  +  M   G  P   TY  ++    + G  DEAL L D +   G 
Sbjct: 321 AGTYARAGFYEEAAKCLDTMTSKGLLPNAFTYNTVMTAYGNIGKVDEALALFDQMKKSGC 380

Query: 611 PHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
             +V  YN IL    +K R  V+  ++ +M ++   P+  T
Sbjct: 381 VPNVNTYNFILGMLGKKSRFTVMLEMLGEMSRSGCTPNRVT 421



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 97/207 (46%), Gaps = 5/207 (2%)

Query: 479 SMKNLLKALGAEGMIRELIQYFCDSKTPLGTP----TYNTVLHSLVEAQESHRAMEIFKQ 534
           +++ +++ALG EG    +     +   P G+      Y TVLH+L  A    RA+E+F +
Sbjct: 139 ALEMVVRALGREGQHDAVCALLDEMPLPPGSRLDVRAYTTVLHALSRAGRYERAVELFAE 198

Query: 535 MKTCGIPPNAATYNIMIDCCS-IIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYG 593
           ++  G+ P   TYN+++D    + R +    AL+  M   G  P   T + +I      G
Sbjct: 199 LRRQGVAPTLVTYNVVLDVYGRMGRSWPRIVALLDEMRAAGVEPDDFTASTVIAACCRDG 258

Query: 594 DFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCH 653
             DEA+   + +   G    V+ YN +L+   + G       ++++M Q+  QPD  T +
Sbjct: 259 LVDEAVAFFEDLKARGHTPCVVTYNALLQVFGKAGNYTEALRVLKEMEQDGCQPDAVTYN 318

Query: 654 FVFSGYVNCGFHNSAMEALQVLSMRML 680
            +   Y   GF+  A + L  ++ + L
Sbjct: 319 ELAGTYARAGFYEEAAKCLDTMTSKGL 345



 Score = 79.0 bits (193), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 82/405 (20%), Positives = 165/405 (40%), Gaps = 30/405 (7%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           ++ S VI AC R      A      +++ G  P   TY+  ++           + VLK 
Sbjct: 245 FTASTVIAACCRDGLVDEAVAFFEDLKARGHTPCVVTYNALLQVFGKAGNYTEALRVLKE 304

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI-SRCTNPKPFS--AFLAACDTMDK 410
           M+Q+  +P   T   L+   ++A   + A   LD + S+   P  F+    + A   + K
Sbjct: 305 MEQDGCQPDAVTYNELAGTYARAGFYEEAAKCLDTMTSKGLLPNAFTYNTVMTAYGNIGK 364

Query: 411 PERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM--D 467
            + A+ +F +M++    P++ TY  +  + G                 ++    +EM  +
Sbjct: 365 VDEALALFDQMKKSGCVPNVNTYNFILGMLGK---------------KSRFTVMLEMLGE 409

Query: 468 MARNNIQHSHISMKNLLKALGAEGM---IRELIQYFCDSKTPLGTPTYNTVLHSLVEAQE 524
           M+R+    + ++   +L   G  GM   +  +++        L   TYNT++ +      
Sbjct: 410 MSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLEGMKSCGVELSRDTYNTLIAAYGRCGS 469

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
              A +++ +M + G  P   TYN +++  S    + +A ++VS M   GF P   +Y+ 
Sbjct: 470 RTNAFKMYNEMTSAGFAPCLTTYNALLNVLSRQGDWSTAQSIVSKMRTKGFKPNDQSYSL 529

Query: 585 LIKILLDYGDFDEALNLLDLVSLEG--IPHDVLLYNTILKK-ACEKGRIDVIEFIIEQMH 641
           L++     G+    ++ ++     G   P  V+L   ++    C   R+  IE   +++ 
Sbjct: 530 LLQCYAKGGNI-AGIDAIEKEVYGGTVFPSWVILRTLVIANFKCR--RLGGIEKAFQEVK 586

Query: 642 QNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
                PD    + + S Y   G ++   E    +    L  ++ T
Sbjct: 587 ARGYNPDLVIFNSMLSMYAKNGMYSKVTEIFDSIKQSGLSPDLIT 631



 Score = 70.9 bits (172), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 115/576 (19%), Positives = 219/576 (38%), Gaps = 41/576 (7%)

Query: 120 LNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKL-HSMVHAN 178
           L+ + Y  ++ AL + G  E A  L   L  R G+ P L  YN  L    ++  S     
Sbjct: 171 LDVRAYTTVLHALSRAGRYERAVELFAEL-RRQGVAPTLVTYNVVLDVYGRMGRSWPRIV 229

Query: 179 LCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDY-IKHYSLSIFSLRKFVWSF 237
             LD M +  V  ++ T + ++        +      +ED   + ++  + +    +  F
Sbjct: 230 ALLDEMRAAGVEPDDFTASTVIAACCRDGLVDEAVAFFEDLKARGHTPCVVTYNALLQVF 289

Query: 238 TRLRDLKSAYETLQHM---------VALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPV 288
            +  +   A   L+ M         V    +   Y  R       +  LD       LP 
Sbjct: 290 GKAGNYTEALRVLKEMEQDGCQPDAVTYNELAGTYA-RAGFYEEAAKCLDTMTSKGLLPN 348

Query: 289 MKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGM 348
                ++++ V+ A G       A  L  QM+  G  P+ +TY+ FI  ++  +     M
Sbjct: 349 A----FTYNTVMTAYGNIGKVDEALALFDQMKKSGCVPNVNTYN-FILGMLGKKSRFTVM 403

Query: 349 -EVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT---NPKPFSAFLAA 404
            E+L  M ++   P   T  T+   C K    D    +L+ +  C    +   ++  +AA
Sbjct: 404 LEMLGEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLEGMKSCGVELSRDTYNTLIAA 463

Query: 405 CDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINA 463
                    A K++ +M      P + TY  L              N+ S+        +
Sbjct: 464 YGRCGSRTNAFKMYNEMTSAGFAPCLTTYNALL-------------NVLSRQGDWSTAQS 510

Query: 464 IEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQ 523
           I   M     + +  S   LL+     G I  +     +       P++  +L +LV A 
Sbjct: 511 IVSKMRTKGFKPNDQSYSLLLQCYAKGGNIAGIDAIEKEVYGGTVFPSW-VILRTLVIAN 569

Query: 524 ESHRAM----EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQT 579
              R +    + F+++K  G  P+   +N M+   +    +   + +   + + G  P  
Sbjct: 570 FKCRRLGGIEKAFQEVKARGYNPDLVIFNSMLSMYAKNGMYSKVTEIFDSIKQSGLSPDL 629

Query: 580 MTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQ 639
           +TY +L+ +     +  EA  +L+ +    +  DV+ YNT++   C++G I   + I+ +
Sbjct: 630 ITYNSLMDMYAKCSESWEAEKILNQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSE 689

Query: 640 MHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
           M  + + P   T H +  GY +    + A E +  +
Sbjct: 690 MIADGMAPCVVTYHTLVGGYASLEMFSEAREVINYM 725



 Score = 66.6 bits (161), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 106/553 (19%), Positives = 204/553 (36%), Gaps = 85/553 (15%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y  ++Q   K G   EA  ++  + E+ G  P    YN   G  A+      A  CLD M
Sbjct: 282 YNALLQVFGKAGNYTEALRVLKEM-EQDGCQPDAVTYNELAGTYARAGFYEEAAKCLDTM 340

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHE---IWEDYIKHYSLSIFSLRKFVWSFTRLR 241
            S+ +  N  TY  ++       N+  V E   +++   K   +   +   F+     + 
Sbjct: 341 TSKGLLPNAFTYNTVMTA---YGNIGKVDEALALFDQMKKSGCVPNVNTYNFILG---ML 394

Query: 242 DLKSAYETLQHMVA-----------------LAMMGKL----YINRTSEGRLRSSRLDIP 280
             KS +  +  M+                  LA+ GK     Y+ R  EG ++S  +++ 
Sbjct: 395 GKKSRFTVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLEG-MKSCGVELS 453

Query: 281 IPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVS 340
                       R +++ +I A GR  +   A ++  +M S G  P   TY+  +  +  
Sbjct: 454 ------------RDTYNTLIAAYGRCGSRTNAFKMYNEMTSAGFAPCLTTYNALLNVLSR 501

Query: 341 DRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSA 400
                    ++  M+    KP D + + L    +K   +   +A+  ++   T   P   
Sbjct: 502 QGDWSTAQSIVSKMRTKGFKPNDQSYSLLLQCYAKGGNIAGIDAIEKEVYGGTV-FPSWV 560

Query: 401 FLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKR 460
            L      +   R +    K  Q+++   R Y     +F ++ + Y +  M+S+V     
Sbjct: 561 ILRTLVIANFKCRRLGGIEKAFQEVK--ARGYNPDLVIFNSMLSMYAKNGMYSKV----- 613

Query: 461 INAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLV 520
                                 +  ++   G+  +LI             TYN+++    
Sbjct: 614 --------------------TEIFDSIKQSGLSPDLI-------------TYNSLMDMYA 640

Query: 521 EAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTM 580
           +  ES  A +I  Q+K+  + P+  +YN +I+        K A  ++S M+ DG  P  +
Sbjct: 641 KCSESWEAEKILNQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVV 700

Query: 581 TYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQM 640
           TY  L+        F EA  +++ +    +    L Y  ++   C+  R +     + ++
Sbjct: 701 TYHTLVGGYASLEMFSEAREVINYMIQHNLKPMELTYRRVVDSYCKAKRFEEARSFLSEV 760

Query: 641 HQNKVQPDPSTCH 653
            +     D    H
Sbjct: 761 SETDPNFDKKVLH 773


>gi|62320494|dbj|BAD95034.1| hypothetical protein [Arabidopsis thaliana]
          Length = 602

 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 113/465 (24%), Positives = 195/465 (41%), Gaps = 33/465 (7%)

Query: 221 KHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIP 280
           K Y+  +    K +  F  LR++  A   ++ +           N    G  + +R+D  
Sbjct: 118 KGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFGQPDVFAYNALINGFCKMNRIDDA 177

Query: 281 IPLNALPVMKVLRWSFSDVIHA------CGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGF 334
                L  M+   +S   V +       C R +   LA +++ Q+ S   QP+  TY   
Sbjct: 178 T--RVLDRMRSKDFSPDTVTYNIMIGSLCSRGK-LDLALKVLNQLLSDNCQPTVITYTIL 234

Query: 335 IRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQIS-RCT 393
           I A + + G+   ++++  M    LKP   T  T+     K   +D A  ++  +  + +
Sbjct: 235 IEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGS 294

Query: 394 NPK--PFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGN 450
            P    ++  L A     K E   K+  KM  +K  P++ TY +L +     +   EE  
Sbjct: 295 EPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCR-DGKIEEA- 352

Query: 451 MFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYF----CDSKTP 506
                     +N +++ M    +     S   L+ A   EG +   I++      D   P
Sbjct: 353 ----------MNLLKL-MKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLP 401

Query: 507 LGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASAL 566
                YNTVL +L +  ++ +A+EIF ++   G  PN+++YN M            A  +
Sbjct: 402 -DIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHM 460

Query: 567 VSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL-DLVSLEGIPHDVLLYNTILKKAC 625
           +  M+ +G  P  +TY ++I  L   G  DEA  LL D+ S E  P  V+ YN +L   C
Sbjct: 461 ILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHP-SVVTYNIVLLGFC 519

Query: 626 EKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAME 670
           +  RI+    ++E M  N  +P+ +T   +  G    G+   AME
Sbjct: 520 KAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAME 564



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 115/268 (42%), Gaps = 20/268 (7%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
            E+LM +M S    P+  TY   I  +  D  +   M +LK+M++  L P   +   L  
Sbjct: 317 GEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIA 376

Query: 372 ECSKALELDLA-EALLDQISRCTNPK--PFSAFLAACDTMDKPERAIKIFAKMRQ-KLRP 427
              +   LD+A E L   IS    P    ++  LA      K ++A++IF K+ +    P
Sbjct: 377 AFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSP 436

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL 487
           +  +Y  +FS             ++S  D  + ++ I ++M  N I    I+  +++  L
Sbjct: 437 NSSSYNTMFSA------------LWSSGDKIRALHMI-LEMMSNGIDPDEITYNSMISCL 483

Query: 488 GAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNA 544
             EGM+ E  +   D ++    P   TYN VL    +A     A+ + + M   G  PN 
Sbjct: 484 CREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNE 543

Query: 545 ATYNIMIDCCSIIRCFKSASALVSMMVR 572
            TY ++I+          A  L + +VR
Sbjct: 544 TTYTVLIEGIGFAGYRAEAMELANDLVR 571



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 78/374 (20%), Positives = 158/374 (42%), Gaps = 25/374 (6%)

Query: 299 VIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNN 358
           + H   R+ N   +  L+  M   G  P        I+   + R +   + V++I+++  
Sbjct: 95  IFHRSCRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFG 154

Query: 359 LKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDKPERA 414
                +  A ++  C K   +D A  +LD++ R  +  P    ++  + +  +  K + A
Sbjct: 155 QPDVFAYNALINGFC-KMNRIDDATRVLDRM-RSKDFSPDTVTYNIMIGSLCSRGKLDLA 212

Query: 415 IKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMD-MARNN 472
           +K+  ++     +P + TY +L      + A   EG     VD A ++    MD M    
Sbjct: 213 LKVLNQLLSDNCQPTVITYTIL------IEATMLEGG----VDEALKL----MDEMLSRG 258

Query: 473 IQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAM 529
           ++    +   +++ +  EGM+    +   + +     P   +YN +L +L+   +     
Sbjct: 259 LKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGSEPDVISYNILLRALLNQGKWEEGE 318

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
           ++  +M +    PN  TY+I+I         + A  L+ +M   G  P   +Y  LI   
Sbjct: 319 KLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAF 378

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649
              G  D A+  L+ +  +G   D++ YNT+L   C+ G+ D    I  ++ +    P+ 
Sbjct: 379 CREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNS 438

Query: 650 STCHFVFSGYVNCG 663
           S+ + +FS   + G
Sbjct: 439 SSYNTMFSALWSSG 452



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 78/172 (45%)

Query: 509 TPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVS 568
           T TYN ++ SL    +   A+++  Q+ +    P   TY I+I+   +      A  L+ 
Sbjct: 193 TVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMD 252

Query: 569 MMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
            M+  G  P   TY  +I+ +   G  D A  ++  + L+G   DV+ YN +L+    +G
Sbjct: 253 EMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGSEPDVISYNILLRALLNQG 312

Query: 629 RIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRML 680
           + +  E ++ +M   K  P+  T   + +     G    AM  L+++  + L
Sbjct: 313 KWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGL 364



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/274 (19%), Positives = 122/274 (44%), Gaps = 20/274 (7%)

Query: 407 TMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM 466
           T+    +A+++   + +  +PD+  Y  L + F  +N          ++D A R+    +
Sbjct: 136 TLRNIPKAVRVMEILEKFGQPDVFAYNALINGFCKMN----------RIDDATRV----L 181

Query: 467 DMARN-NIQHSHISMKNLLKALGAEG----MIRELIQYFCDSKTPLGTPTYNTVLHSLVE 521
           D  R+ +     ++   ++ +L + G     ++ L Q   D+  P    TY  ++ + + 
Sbjct: 182 DRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPT-VITYTILIEATML 240

Query: 522 AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMT 581
                 A+++  +M + G+ P+  TYN +I           A  +V  +   G  P  ++
Sbjct: 241 EGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGSEPDVIS 300

Query: 582 YTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMH 641
           Y  L++ LL+ G ++E   L+  +  E    +V+ Y+ ++   C  G+I+    +++ M 
Sbjct: 301 YNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMK 360

Query: 642 QNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
           +  + PD  +   + + +   G  + A+E L+ +
Sbjct: 361 EKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETM 394



 Score = 50.1 bits (118), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 71/153 (46%), Gaps = 6/153 (3%)

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDC-CSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
           R MEI ++       P+   YN +I+  C + R   +   L  M  +D F P T+TY  +
Sbjct: 145 RVMEILEKFGQ----PDVFAYNALINGFCKMNRIDDATRVLDRMRSKD-FSPDTVTYNIM 199

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           I  L   G  D AL +L+ +  +     V+ Y  +++    +G +D    ++++M    +
Sbjct: 200 IGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGL 259

Query: 646 QPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678
           +PD  T + +  G    G  + A E ++ L ++
Sbjct: 260 KPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELK 292



 Score = 41.6 bits (96), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 42/195 (21%), Positives = 82/195 (42%), Gaps = 2/195 (1%)

Query: 59  IVDALCR-GERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKE 117
           ++  LC+ G+  +A  +   LG    S  +  +  + +    S D +  +     M    
Sbjct: 409 VLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNG 468

Query: 118 IGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHA 177
           I  +   Y  M+  LC+ G ++EA  L+  +      +P +  YN  L    K H +  A
Sbjct: 469 IDPDEITYNSMISCLCREGMVDEAFELLVDM-RSCEFHPSVVTYNIVLLGFCKAHRIEDA 527

Query: 178 NLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSF 237
              L+ M       NE TYT L++   +    +   E+  D ++  ++S +S ++   +F
Sbjct: 528 INVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDLVRIDAISEYSFKRLHRTF 587

Query: 238 TRLRDLKSAYETLQH 252
             L  L+ + +T  +
Sbjct: 588 PLLNVLQRSSQTFGY 602


>gi|302769784|ref|XP_002968311.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
 gi|300163955|gb|EFJ30565.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
          Length = 600

 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 95/396 (23%), Positives = 167/396 (42%), Gaps = 16/396 (4%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +F+  I    R    G A+ +   M+  G  P+  TY+  +  + +   + +   + + M
Sbjct: 52  TFNIYISGLCRASRIGDAQTVFDGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERM 111

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLD-QISRCTNPK--PFSAFLAACDTMDKP 411
            +    P   T  TL     K  +LD A  + D  + R   P    ++A +      DK 
Sbjct: 112 IKAGYSPDVVTYNTLLHGFCKVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKL 171

Query: 412 ERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           + A +I  +M  + L PD+ TY  L      VN   + G    +VD A R+  ++   + 
Sbjct: 172 DEAQRILQRMVSESLVPDVVTYNSL------VNGLCKNG----RVDEA-RMLIVDKGFSP 220

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAME 530
           N I +S + +  L + L      R+L++    +       +YN ++H L   Q    A++
Sbjct: 221 NVITYSTL-ISGLCRELRRLESARQLLEKMVLNGCKPDIVSYNALIHGLAREQGVSEALK 279

Query: 531 IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590
           +F  +   G  P   TYNI+ID          A  L S +V+ G  P  +TYT  I  L 
Sbjct: 280 LFGSVLRQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLC 339

Query: 591 DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650
             G  ++AL +L  +  +G   DV+ +N ++   C++ R+D  E ++  M      P+  
Sbjct: 340 KAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAI 399

Query: 651 TCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           + + +  G    G    AM   + +  R +   V T
Sbjct: 400 SFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVT 435



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 114/543 (20%), Positives = 209/543 (38%), Gaps = 60/543 (11%)

Query: 127 LMMQALCKGGYLEEASNLIYFLGER-YGIYPILPVYNSFLGACAKLHSMVHANLCLDLMD 185
           + +  LC+   + +A  +  F G R +G +P    YN+ L        M  A    + M 
Sbjct: 55  IYISGLCRASRIGDAQTV--FDGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMI 112

Query: 186 SRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH-YSLSIFSLRKFVWSFTRLRDLK 244
                 + VTY  LL        L    +I++  +K  +   + +    +  F +   L 
Sbjct: 113 KAGYSPDVVTYNTLLHGFCKVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLD 172

Query: 245 SAYETLQHMVALAMMGKLYI-NRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHA- 302
            A   LQ MV+ +++  +   N    G  ++ R+D    L           ++S +I   
Sbjct: 173 EAQRILQRMVSESLVPDVVTYNSLVNGLCKNGRVDEARMLIVDKGFSPNVITYSTLISGL 232

Query: 303 CGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQ 362
           C   +    A QL+ +M   G +P   +Y+  I  +  ++G+   +++   + +   +P+
Sbjct: 233 CRELRRLESARQLLEKMVLNGCKPDIVSYNALIHGLAREQGVSEALKLFGSVLRQGYEPE 292

Query: 363 DSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKM- 421
              + T ++         L + LL +                    D+   A ++F+ + 
Sbjct: 293 ---VPTYNI---------LIDGLLKE--------------------DRVNEAFELFSGLV 320

Query: 422 RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMK 481
           +  L PD  TY +     G   A   E  +            +  DM         +S  
Sbjct: 321 KHGLEPDAITYTVFID--GLCKAGRVEDALL-----------MLKDMDEKGCVPDVVSHN 367

Query: 482 NLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTC 538
            ++  L  E  + E        +    +P   ++NT++     A +  +AM  FK+M   
Sbjct: 368 AVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKR 427

Query: 539 GIPPNAATYNIMIDCCSIIRC---FKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDF 595
           G+ P   TYNI++D     R     K A  L   M+  G  P  +TY+ALI  L   G  
Sbjct: 428 GVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKL 487

Query: 596 DEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID-VIEFIIEQMHQNKVQPDPSTCHF 654
           D+A  LL  +  +G   +V  YN+++   C   ++D  +E  +  + +  V PD  T   
Sbjct: 488 DDARRLLGAMEAKGCIPNVYTYNSLISGLCGLDKVDEALELFVAMVEKGCV-PDTITYGT 546

Query: 655 VFS 657
           + S
Sbjct: 547 IIS 549



 Score = 67.0 bits (162), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 78/189 (41%), Gaps = 24/189 (12%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TYN +L  L        A  ++++M   G  P+  TYN ++     +     A  +    
Sbjct: 87  TYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGKLDEALKIFDGA 146

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           V+ GF P  +TY ALI         DEA  +L  +  E +  DV+ YN+++   C+ GR+
Sbjct: 147 VKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSESLVPDVVTYNSLVNGLCKNGRV 206

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEK 690
           D    +I                      V+ GF  + +    ++S   LC E+  LE  
Sbjct: 207 DEARMLI----------------------VDKGFSPNVITYSTLIS--GLCRELRRLESA 242

Query: 691 RSDFEDLIL 699
           R   E ++L
Sbjct: 243 RQLLEKMVL 251



 Score = 59.3 bits (142), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 80/176 (45%), Gaps = 1/176 (0%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           T   +L SL+++ +  +A    +Q+   G+  + +T+NI I           A  +   M
Sbjct: 18  TVGILLRSLLKSGKIEKAHRFVEQLLVKGLC-DISTFNIYISGLCRASRIGDAQTVFDGM 76

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
            + GF+P  +TY AL+  L + G   +A  L + +   G   DV+ YNT+L   C+ G++
Sbjct: 77  RKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGKL 136

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           D    I +   +    PD  T + + +G+      + A   LQ +    L  +V T
Sbjct: 137 DEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSESLVPDVVT 192



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 101/480 (21%), Positives = 187/480 (38%), Gaps = 57/480 (11%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y  ++   CK G L+EA   I+    + G  P +  YN+ +    K   +  A   L  M
Sbjct: 123 YNTLLHGFCKVGKLDEALK-IFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRM 181

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTR-LRDL 243
            S  +  + VTY  L+        +     +  D  K +S ++ +    +    R LR L
Sbjct: 182 VSESLVPDVVTYNSLVNGLCKNGRVDEARMLIVD--KGFSPNVITYSTLISGLCRELRRL 239

Query: 244 KSAYETLQHMVALAMMGKLY-INRTSEGRLRSSRLDIPIPLNALPVMKVLRW-------S 295
           +SA + L+ MV       +   N    G  R   +   + L       VLR        +
Sbjct: 240 ESARQLLEKMVLNGCKPDIVSYNALIHGLAREQGVSEALKLFG----SVLRQGYEPEVPT 295

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           ++ +I    +      A +L   +   GL+P + TY  FI  +     + + + +LK M 
Sbjct: 296 YNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMD 355

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLD--QISRCT-NPKPFSAFLAACDTMDKPE 412
           +    P   +   +     K   +D AE LL   +   C+ N   F+  +       K +
Sbjct: 356 EKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWK 415

Query: 413 RAIKIFAKM-RQKLRPDIRTYELL----------------FSLFGNVNAPYEEGNM---- 451
           +A+  F +M ++ ++P + TY +L                 +LF   +A  E+G +    
Sbjct: 416 KAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLF---DAMIEKGRVPDVV 472

Query: 452 -----------FSQVDSAKRI-NAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQY 499
                        ++D A+R+  A+E      N+ +++ S+ + L  L       EL   
Sbjct: 473 TYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNV-YTYNSLISGLCGLDKVDEALELFVA 531

Query: 500 FCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID-CCSIIR 558
             +      T TY T++ +L + +   +A+ +F      G+ P +  Y  +ID  C++ R
Sbjct: 532 MVEKGCVPDTITYGTIISALCKQEMVDKALALFDGSLEAGVVPTSGMYFSLIDGLCAVAR 591


>gi|449532420|ref|XP_004173179.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g05670, mitochondrial-like [Cucumis sativus]
          Length = 748

 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 85/394 (21%), Positives = 166/394 (42%), Gaps = 29/394 (7%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           S++ +I++  R      A +L++QM      P   +Y   I        L+  ++++  M
Sbjct: 260 SYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCHLGELKKALKLMDDM 319

Query: 355 QQNNLKPQDSTI-ATLSVECSKALELDLAEALLDQISRCTNPKP--FSAFLAACDTMDKP 411
           Q   LKP   T  + + + C      +  + L + +S+   P    ++  +     +   
Sbjct: 320 QIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHV 379

Query: 412 ERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDS------------- 457
             A K F +M  +K+ PD  TY  L   FG      E  N+F ++ S             
Sbjct: 380 RTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTL 439

Query: 458 -------AKRINAIEM--DMARNNIQHSHISMKNLLKALGAEGMI---RELIQYFCDSKT 505
                   + +NA  +  +M +  +  + ++   L+  L   G +    EL+        
Sbjct: 440 IDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGL 499

Query: 506 PLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASA 565
            L    YN++++ + +A    +A+++ K+M+  GI P+A TY  +ID    +     A  
Sbjct: 500 QLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHK 559

Query: 566 LVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKAC 625
           L+  M+  G  P  +T+  L+      G  ++   LL  +  +GI  D + YNT++K+ C
Sbjct: 560 LLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHC 619

Query: 626 EKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
            +  ++    I ++M    V PD +T + +  G+
Sbjct: 620 IRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGH 653



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 79/345 (22%), Positives = 141/345 (40%), Gaps = 20/345 (5%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ +I   G+       + L  +M S GL+P   TY   I        + N   +   M
Sbjct: 400 TYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEM 459

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT---NPKPFSAFLAACDTMDKP 411
            Q  + P   T   L     K  ELD A  LLD++ +     N   +++ +         
Sbjct: 460 VQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNI 519

Query: 412 ERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           E+AIK+  +M    + PD  TY  +   +  +            +D A ++     +M  
Sbjct: 520 EQAIKLMKEMEVAGIDPDAITYTTVIDAYCRL----------GDIDKAHKL---LQEMLD 566

Query: 471 NNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHR 527
             +Q + ++   L+      GM+ +   L+ +  +        TYNT++         + 
Sbjct: 567 RGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNT 626

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
             +I+K+M+  G+ P++ TYNI+I      R  K A  L   M+  G+ P   +Y ALIK
Sbjct: 627 TTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIK 686

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDV 632
                  F EA  L + +   G+  D  +YN  +    E+G +++
Sbjct: 687 RFYKKRKFXEARELFEEMRGHGLVADGEIYNFFVDMCYEEGDVEI 731



 Score = 87.0 bits (214), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 90/401 (22%), Positives = 180/401 (44%), Gaps = 24/401 (5%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEV-LKIMQQNNLKPQDSTIATLS 370
           A +L+ ++ S GL  +  + + F+  I ++     G+E+ +K+  +  +    ++   + 
Sbjct: 209 ARKLLDKLLSYGLVVTVDSCNAFLSRIANNS---EGIEMAIKVFCEYGISWNTTSYNIII 265

Query: 371 VECSKALELDLAEALLDQIS-RCTNPK--PFSAFLAACDTMDKPERAIKIFAKMRQK-LR 426
               +  ++  A  LL Q+  R + P    +S  +     + + ++A+K+   M+ K L+
Sbjct: 266 YSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCHLGELKKALKLMDDMQIKGLK 325

Query: 427 PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKA 486
           P+  TY  +  L   +   +E   +  ++ S K I         +N+ ++      L+  
Sbjct: 326 PNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIP--------DNVVYT-----TLIHG 372

Query: 487 LGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPN 543
               G +R   ++F +  +   +P   TY T++    +  +      +F +M + G+ P+
Sbjct: 373 FFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPD 432

Query: 544 AATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLD 603
             TY  +ID         +A +L + MV+ G  P  +TY ALI  L  +G+ D A  LLD
Sbjct: 433 EVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLD 492

Query: 604 LVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
            +  +G+  +V +YN+++   C+ G I+    ++++M    + PD  T   V   Y   G
Sbjct: 493 EMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLG 552

Query: 664 FHNSAMEALQVLSMRMLCEEVSTLEEKRSDFEDLILAEDSE 704
             + A + LQ +  R L   V T     + F  L + ED +
Sbjct: 553 DIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGD 593



 Score = 52.8 bits (125), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 78/366 (21%), Positives = 141/366 (38%), Gaps = 20/366 (5%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           ++ +IH   +  +   A +   +M S  + P   TY   I+       +     +   M 
Sbjct: 366 YTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMI 425

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEAL---LDQISRCTNPKPFSAFLAACDTMDKPE 412
              LKP + T  TL     KA E+  A +L   + Q+    N   + A +       + +
Sbjct: 426 SRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELD 485

Query: 413 RAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471
            A ++  +MR+K L+ ++  Y  +      VN   + GN+   +   K     EM++A  
Sbjct: 486 TANELLDEMRKKGLQLNVCIYNSM------VNGICKAGNIEQAIKLMK-----EMEVA-- 532

Query: 472 NIQHSHISMKNLLKA---LGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRA 528
            I    I+   ++ A   LG      +L+Q   D        T+N +++           
Sbjct: 533 GIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDG 592

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
             +   M   GI P+A TYN ++    I     + + +   M   G  P + TY  LIK 
Sbjct: 593 DRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKG 652

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
                +  EA  L   +  +G    V  YN ++K+  +K +      + E+M  + +  D
Sbjct: 653 HCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKRKFXEARELFEEMRGHGLVAD 712

Query: 649 PSTCHF 654
               +F
Sbjct: 713 GEIYNF 718


>gi|414872432|tpg|DAA50989.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
          Length = 604

 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 99/432 (22%), Positives = 171/432 (39%), Gaps = 61/432 (14%)

Query: 287 PVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRN 346
           P+  V     SDV+   G  +    A  +  Q+++   QP +  Y+  I  ++ +     
Sbjct: 120 PICVVTPTELSDVVRMLGNAKMVRQAITIFYQIKTRKCQPIAQAYNSMIIMLMHEGQYEK 179

Query: 347 GMEVLKIMQ-QNNLKPQDSTIATLSVECSKALELDLAEALLDQ---ISRCTNPKPFSAFL 402
             ++   M  + +  P   T + L     K    D A  LL++   I      K ++  +
Sbjct: 180 VHQLYNEMSTEGHCFPDTVTYSALISAFCKLGRRDSAIQLLNEMKEIGMQPTTKIYTMLI 239

Query: 403 AACDTMDKPERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI 461
           A     +    A+ +F +MR Q  RPD+ TY  L    G      E  + F +       
Sbjct: 240 ALFFKFNDAHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFCE------- 292

Query: 462 NAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHS 518
                 M R   +   + M N++  LG  G + + ++ F + +T    P   TYNT++ +
Sbjct: 293 ------MQREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKA 346

Query: 519 LVEAQESHRAMEI---FKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGF 575
           L E++   RA E+   F++MK  GI P++ TY+I+ID        + A  L+  M   GF
Sbjct: 347 LFESKS--RASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGF 404

Query: 576 YP-----------------------------------QTMTYTALIKILLDYGDFDEALN 600
            P                                       Y  +IK L   G  D+A+N
Sbjct: 405 PPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAIN 464

Query: 601 LLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYV 660
           + D ++  G   DV  YN ++      G +D     + +M ++   PD ++ + + +G  
Sbjct: 465 MFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLA 524

Query: 661 NCGFHNSAMEAL 672
             G  + AME L
Sbjct: 525 KTGGPHRAMEML 536



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 64/304 (21%), Positives = 135/304 (44%), Gaps = 27/304 (8%)

Query: 297 SDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEV-LKIMQ 355
           +++I+  G+      A +L  +M++L   PS  TY+  I+A+   +   + +    + M+
Sbjct: 306 NNMINFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMK 365

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPER-- 413
           ++ + P   T + L     K   ++ A  LL+++     P   +A+ +  D + K +R  
Sbjct: 366 ESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYD 425

Query: 414 -AIKIFAKMRQKL-RPDIRTYELLFSLFGNVNAPYEEGNMFSQVDS------AKRINAIE 465
            A ++F ++++       R Y ++    G      +  NMF +++           NA+ 
Sbjct: 426 LACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALM 485

Query: 466 MDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQES 525
             +AR  +    +S    ++ +   G I ++              +YN +L+ L +    
Sbjct: 486 SGLARTGMLDEALST---MRRMQEHGCIPDI-------------NSYNIILNGLAKTGGP 529

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
           HRAME+   MK   + P+  +YN ++   S    F+ AS L+  M   GF    +TY+++
Sbjct: 530 HRAMEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEASKLMKEMNTLGFEYDLITYSSI 589

Query: 586 IKIL 589
           ++ +
Sbjct: 590 LEAI 593



 Score = 63.2 bits (152), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 86/187 (45%), Gaps = 5/187 (2%)

Query: 467 DMARNNI-QHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEA 522
           +M RN I   +   + ++++ LG   M+R+ I  F   KT    P    YN+++  L+  
Sbjct: 115 EMVRNPICVVTPTELSDVVRMLGNAKMVRQAITIFYQIKTRKCQPIAQAYNSMIIMLMHE 174

Query: 523 QESHRAMEIFKQMKTCG-IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMT 581
            +  +  +++ +M T G   P+  TY+ +I     +    SA  L++ M   G  P T  
Sbjct: 175 GQYEKVHQLYNEMSTEGHCFPDTVTYSALISAFCKLGRRDSAIQLLNEMKEIGMQPTTKI 234

Query: 582 YTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMH 641
           YT LI +   + D   AL+L + +  +    DV  Y  +++   + GRID       +M 
Sbjct: 235 YTMLIALFFKFNDAHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQ 294

Query: 642 QNKVQPD 648
           +   +PD
Sbjct: 295 REGCRPD 301



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 76/379 (20%), Positives = 149/379 (39%), Gaps = 34/379 (8%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           ++S +I A  +      A QL+ +M+ +G+QP++  Y   I            + + + M
Sbjct: 199 TYSALISAFCKLGRRDSAIQLLNEMKEIGMQPTTKIYTMLIALFFKFNDAHGALSLFEEM 258

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLA-ACDTMDKPER 413
           +    +P   T   L     KA  +D A     ++ R    +P + F+    + + K  R
Sbjct: 259 RHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQR-EGCRPDTVFMNNMINFLGKAGR 317

Query: 414 ---AIKIFAKMRQKLR--PDIRTYELLF-SLFGNVNAPYEEGNMFSQ------------- 454
              A+K+F +M + LR  P + TY  +  +LF + +   E  + F +             
Sbjct: 318 LDDAMKLFQEM-ETLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTY 376

Query: 455 ---VDSAKRINAIEM------DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKT 505
              +D   + N +E       +M          +  +L+ ALG         + F + K 
Sbjct: 377 SILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKE 436

Query: 506 PLGTPT---YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKS 562
             G+ +   Y  ++  L +A     A+ +F +M   G  P+   YN ++   +       
Sbjct: 437 NCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDE 496

Query: 563 ASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILK 622
           A + +  M   G  P   +Y  ++  L   G    A+ +L  +    +  DV+ YNT+L 
Sbjct: 497 ALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLG 556

Query: 623 KACEKGRIDVIEFIIEQMH 641
                G  +    ++++M+
Sbjct: 557 ALSHAGMFEEASKLMKEMN 575


>gi|326527027|dbj|BAK04455.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 860

 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 100/389 (25%), Positives = 164/389 (42%), Gaps = 33/389 (8%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ VIH   +   +G A  L  +M   G++P   TY+  I A+   R +     VL+ M
Sbjct: 267 AYNTVIHGFFKEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQM 326

Query: 355 QQNNLKPQDSTI-------ATLS--VECSKALELDLAEALLDQISRCTNPKPFSAFLAAC 405
             N  +P   T        ATL    E +K      +  L+  I  C      ++FLA+ 
Sbjct: 327 TTNGAQPDTVTYNCMIHGYATLGRLKEAAKMFRKMKSRGLIPNIVIC------NSFLASL 380

Query: 406 DTMDKPERAIKIFAKMRQKL-RPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAI 464
               + + A +IF  M  K  +PDI +Y  L   + +     +   +F+ + S    N I
Sbjct: 381 CKHGRSKEAAEIFDSMTAKGHKPDIVSYCTLLHGYASEGWFADMIGLFNSMKS----NGI 436

Query: 465 EMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVE 521
             D    NI         L+ A    GM+ + +  F + +    +P   TY+TV+ +   
Sbjct: 437 AADCRVFNI---------LIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISAFSR 487

Query: 522 AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGF-YPQTM 580
                 AME F QM   GI PN A Y+ +I    +      A  LVS M+  G   P  +
Sbjct: 488 MGRLTDAMEKFNQMVARGIQPNTAVYHSIIQGFCMHGGLVKAKELVSEMINKGIPRPDIV 547

Query: 581 TYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQM 640
            + ++I  L   G   +A ++ DLV+  G   DV+ + +++   C  G++D    I++ M
Sbjct: 548 FFNSVINSLCKDGRVMDAHDIFDLVTDIGERPDVITFTSLIDGYCLVGKMDKAFKILDAM 607

Query: 641 HQNKVQPDPSTCHFVFSGYVNCGFHNSAM 669
               V+ D  T   +  GY   G  N  +
Sbjct: 608 EVVGVETDIVTYSTLLDGYFKNGRINDGL 636



 Score = 67.0 bits (162), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 85/364 (23%), Positives = 144/364 (39%), Gaps = 31/364 (8%)

Query: 329 HTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL-SVECSKALELDLAEALLD 387
           HTY   +      R    G+ +   + +  LK    T +TL    C      +    LL 
Sbjct: 158 HTYSILMDCCCRARRPDLGLVLFGCILRTGLKIHQITASTLLKCLCYANRTEEAVNVLLH 217

Query: 388 QISR--CTNPKPFSAFL---AACDTMDKPERAIKIF---AKMRQKLRPDIRTYELLFSLF 439
           ++S   C  P  FS  +     CD     +RA+ +F   AK      P++  Y  +   F
Sbjct: 218 RMSELGCV-PNVFSYSIILKGLCDN-SMSQRALDLFQMMAKEGGACSPNVVAYNTVIHGF 275

Query: 440 GNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL-GAEGMIR-ELI 497
                 ++EG          +  ++  +M R  ++   ++   ++ AL  A  M + EL+
Sbjct: 276 ------FKEGE-------TGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELV 322

Query: 498 --QYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYN-IMIDCC 554
             Q   +   P  T TYN ++H          A ++F++MK+ G+ PN    N  +   C
Sbjct: 323 LRQMTTNGAQP-DTVTYNCMIHGYATLGRLKEAAKMFRKMKSRGLIPNIVICNSFLASLC 381

Query: 555 SIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDV 614
              R  K A+ +   M   G  P  ++Y  L+      G F + + L + +   GI  D 
Sbjct: 382 KHGRS-KEAAEIFDSMTAKGHKPDIVSYCTLLHGYASEGWFADMIGLFNSMKSNGIAADC 440

Query: 615 LLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQV 674
            ++N ++    ++G +D    I  +M Q  V PD  T   V S +   G    AME    
Sbjct: 441 RVFNILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISAFSRMGRLTDAMEKFNQ 500

Query: 675 LSMR 678
           +  R
Sbjct: 501 MVAR 504



 Score = 65.9 bits (159), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 79/177 (44%), Gaps = 3/177 (1%)

Query: 511 TYNTVLHSLVEAQESHRAMEIF-KQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSM 569
           T +T+L  L  A  +  A+ +   +M   G  PN  +Y+I++         + A  L  M
Sbjct: 194 TASTLLKCLCYANRTEEAVNVLLHRMSELGCVPNVFSYSIILKGLCDNSMSQRALDLFQM 253

Query: 570 MVRDGFY--PQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEK 627
           M ++G    P  + Y  +I      G+  +A +L   ++ +G+  DV+ YN I+   C+ 
Sbjct: 254 MAKEGGACSPNVVAYNTVIHGFFKEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKA 313

Query: 628 GRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEV 684
             +D  E ++ QM  N  QPD  T + +  GY   G    A +  + +  R L   +
Sbjct: 314 RAMDKAELVLRQMTTNGAQPDTVTYNCMIHGYATLGRLKEAAKMFRKMKSRGLIPNI 370



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/269 (22%), Positives = 111/269 (41%), Gaps = 22/269 (8%)

Query: 413 RAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471
           +A  +F +M RQ ++PD+ TY L+        A          +D A+    +   M  N
Sbjct: 283 KACSLFHEMTRQGVKPDVVTYNLIIDALCKARA----------MDKAE---LVLRQMTTN 329

Query: 472 NIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTY---NTVLHSLVEAQESHRA 528
             Q   ++   ++      G ++E  + F   K+    P     N+ L SL +   S  A
Sbjct: 330 GAQPDTVTYNCMIHGYATLGRLKEAAKMFRKMKSRGLIPNIVICNSFLASLCKHGRSKEA 389

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
            EIF  M   G  P+  +Y  ++   +    F     L + M  +G       +  LI  
Sbjct: 390 AEIFDSMTAKGHKPDIVSYCTLLHGYASEGWFADMIGLFNSMKSNGIAADCRVFNILIHA 449

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI-DVIEFIIEQMHQNKVQP 647
               G  D+A+ +   +  +G+  DV+ Y+T++      GR+ D +E    QM    +QP
Sbjct: 450 YAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISAFSRMGRLTDAME-KFNQMVARGIQP 508

Query: 648 DPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
           + +  H +  G+     H   ++A +++S
Sbjct: 509 NTAVYHSIIQGFC---MHGGLVKAKELVS 534



 Score = 59.3 bits (142), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 72/347 (20%), Positives = 139/347 (40%), Gaps = 29/347 (8%)

Query: 315 LMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECS 374
           L+ +M  LG  P+  +Y   ++ +  +   +  +++ ++M +       + +A  +V   
Sbjct: 215 LLHRMSELGCVPNVFSYSIILKGLCDNSMSQRALDLFQMMAKEGGACSPNVVAYNTVIHG 274

Query: 375 --KALELDLAEALLDQISR-CTNPKPFSAFL---AACDT--MDKPERAIKIFAKMRQKLR 426
             K  E   A +L  +++R    P   +  L   A C    MDK E  ++         +
Sbjct: 275 FFKEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTT--NGAQ 332

Query: 427 PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKA 486
           PD  TY  +   +  +    E   MF ++ S   I  I             +   + L +
Sbjct: 333 PDTVTYNCMIHGYATLGRLKEAAKMFRKMKSRGLIPNI-------------VICNSFLAS 379

Query: 487 LGAEGMIRELIQYFCDSKTPLG----TPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPP 542
           L   G  +E  + F DS T  G      +Y T+LH           + +F  MK+ GI  
Sbjct: 380 LCKHGRSKEAAEIF-DSMTAKGHKPDIVSYCTLLHGYASEGWFADMIGLFNSMKSNGIAA 438

Query: 543 NAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL 602
           +   +NI+I   +       A  + + M + G  P  +TY+ +I      G   +A+   
Sbjct: 439 DCRVFNILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISAFSRMGRLTDAMEKF 498

Query: 603 DLVSLEGIPHDVLLYNTILKKAC-EKGRIDVIEFIIEQMHQNKVQPD 648
           + +   GI  +  +Y++I++  C   G +   E + E +++   +PD
Sbjct: 499 NQMVARGIQPNTAVYHSIIQGFCMHGGLVKAKELVSEMINKGIPRPD 545



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 82/415 (19%), Positives = 159/415 (38%), Gaps = 97/415 (23%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ +I A  + +    AE ++ QM + G QP + TY+  I    +   L+   ++ + M
Sbjct: 302 TYNLIIDALCKARAMDKAELVLRQMTTNGAQPDTVTYNCMIHGYATLGRLKEAAKMFRKM 361

Query: 355 QQNNLKPQ----DSTIATLSVECSKALELDLAEAL---------LDQISRCT-------- 393
           +   L P     +S +A+L   C      + AE            D +S CT        
Sbjct: 362 KSRGLIPNIVICNSFLASL---CKHGRSKEAAEIFDSMTAKGHKPDIVSYCTLLHGYASE 418

Query: 394 --------------------NPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTY 432
                               + + F+  + A       + A+ IF +M+Q+ + PD+ TY
Sbjct: 419 GWFADMIGLFNSMKSNGIAADCRVFNILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTY 478

Query: 433 ELLFSLFGNVNAPYEEGNMFSQVDSAKRI---NAIEMDMARNNIQHSH-ISMKNLLKALG 488
             + S F  +    +    F+Q+  A+ I    A+   + +    H   +  K L+  + 
Sbjct: 479 STVISAFSRMGRLTDAMEKFNQM-VARGIQPNTAVYHSIIQGFCMHGGLVKAKELVSEMI 537

Query: 489 AEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYN 548
            +G+ R  I +F            N+V++SL +      A +IF  +   G  P+  T+ 
Sbjct: 538 NKGIPRPDIVFF------------NSVINSLCKDGRVMDAHDIFDLVTDIGERPDVITFT 585

Query: 549 IMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLE 608
            +ID   ++                                   G  D+A  +LD + + 
Sbjct: 586 SLIDGYCLV-----------------------------------GKMDKAFKILDAMEVV 610

Query: 609 GIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
           G+  D++ Y+T+L    + GRI+    +  +M +  V+P+  T   + +G    G
Sbjct: 611 GVETDIVTYSTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAG 665



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 72/343 (20%), Positives = 131/343 (38%), Gaps = 34/343 (9%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           ++S VI A  R      A +   QM + G+QP++  Y   I+      GL    E++  M
Sbjct: 477 TYSTVISAFSRMGRLTDAMEKFNQMVARGIQPNTAVYHSIIQGFCMHGGLVKAKELVSEM 536

Query: 355 QQNNLKPQDSTI--ATLSVECSKALELDLAEA--LLDQISRCTNPKPFSAFLAACDTMDK 410
               +   D     + ++  C     +D  +   L+  I    +   F++ +     + K
Sbjct: 537 INKGIPRPDIVFFNSVINSLCKDGRVMDAHDIFDLVTDIGERPDVITFTSLIDGYCLVGK 596

Query: 411 PERAIKIFAKMRQ-KLRPDIRTYELLFSLF---GNVN---APYEE-------------GN 450
            ++A KI   M    +  DI TY  L   +   G +N     + E             G 
Sbjct: 597 MDKAFKILDAMEVVGVETDIVTYSTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGI 656

Query: 451 MFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRE--------LIQYFCD 502
           M + +  A R  A       + +  S  ++   +  +   G+ R         L Q    
Sbjct: 657 MLAGLFRAGRTVAARKKF--HEMIESGTTVTVSIYGIILGGLCRNNCADEAIILFQKLGT 714

Query: 503 SKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKS 562
                     NT+++++ + Q    A E+F  +   G+ PN +TY +MI         + 
Sbjct: 715 MNVKFSITILNTMINAMYKVQRKEEAKELFATISASGLLPNESTYGVMIINLLKDGAVED 774

Query: 563 ASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLV 605
           A+ + S M + G  P +     +I++LL+ G+  +A N L  V
Sbjct: 775 ANNMFSSMEKSGIVPGSRLLNRIIRMLLEKGEIAKAGNYLSKV 817


>gi|449449677|ref|XP_004142591.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Cucumis sativus]
          Length = 748

 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 85/394 (21%), Positives = 166/394 (42%), Gaps = 29/394 (7%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           S++ +I++  R      A +L++QM      P   +Y   I        L+  ++++  M
Sbjct: 260 SYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCHLGELKKALKLMDDM 319

Query: 355 QQNNLKPQDSTI-ATLSVECSKALELDLAEALLDQISRCTNPKP--FSAFLAACDTMDKP 411
           Q   LKP   T  + + + C      +  + L + +S+   P    ++  +     +   
Sbjct: 320 QIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHV 379

Query: 412 ERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDS------------- 457
             A K F +M  +K+ PD  TY  L   FG      E  N+F ++ S             
Sbjct: 380 RTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTL 439

Query: 458 -------AKRINAIEM--DMARNNIQHSHISMKNLLKALGAEGMI---RELIQYFCDSKT 505
                   + +NA  +  +M +  +  + ++   L+  L   G +    EL+        
Sbjct: 440 IDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGL 499

Query: 506 PLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASA 565
            L    YN++++ + +A    +A+++ K+M+  GI P+A TY  +ID    +     A  
Sbjct: 500 QLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHK 559

Query: 566 LVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKAC 625
           L+  M+  G  P  +T+  L+      G  ++   LL  +  +GI  D + YNT++K+ C
Sbjct: 560 LLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHC 619

Query: 626 EKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
            +  ++    I ++M    V PD +T + +  G+
Sbjct: 620 IRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGH 653



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 90/401 (22%), Positives = 180/401 (44%), Gaps = 24/401 (5%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEV-LKIMQQNNLKPQDSTIATLS 370
           A +L+ ++ S GL  +  + + F+  I ++     G+E+ +K+  +  +    ++   + 
Sbjct: 209 ARKLLDKLLSYGLVVTVDSCNAFLSRIANNS---EGIEMAIKVFCEYGISWNTTSYNIII 265

Query: 371 VECSKALELDLAEALLDQIS-RCTNPK--PFSAFLAACDTMDKPERAIKIFAKMRQK-LR 426
               +  ++  A  LL Q+  R + P    +S  +     + + ++A+K+   M+ K L+
Sbjct: 266 YSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCHLGELKKALKLMDDMQIKGLK 325

Query: 427 PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKA 486
           P+  TY  +  L   +   +E   +  ++ S K I         +N+ ++      L+  
Sbjct: 326 PNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIP--------DNVVYT-----TLIHG 372

Query: 487 LGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPN 543
               G +R   ++F +  +   +P   TY T++    +  +      +F +M + G+ P+
Sbjct: 373 FFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPD 432

Query: 544 AATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLD 603
             TY  +ID         +A +L + MV+ G  P  +TY ALI  L  +G+ D A  LLD
Sbjct: 433 EVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLD 492

Query: 604 LVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
            +  +G+  +V +YN+++   C+ G I+    ++++M    + PD  T   V   Y   G
Sbjct: 493 EMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLG 552

Query: 664 FHNSAMEALQVLSMRMLCEEVSTLEEKRSDFEDLILAEDSE 704
             + A + LQ +  R L   V T     + F  L + ED +
Sbjct: 553 DIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGD 593



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 78/345 (22%), Positives = 140/345 (40%), Gaps = 20/345 (5%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ +I   G+       + L  +M S GL+P   TY   I        + N   +   M
Sbjct: 400 TYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEM 459

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT---NPKPFSAFLAACDTMDKP 411
            Q  + P   T   L     K  ELD A  LLD++ +     N   +++ +         
Sbjct: 460 VQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNI 519

Query: 412 ERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           E+AIK+  +M    + PD  TY  +   +  +            +D A ++     +M  
Sbjct: 520 EQAIKLMKEMEVAGIDPDAITYTTVIDAYCRL----------GDIDKAHKL---LQEMLD 566

Query: 471 NNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHR 527
             +Q + ++   L+      GM+ +   L+ +  +        TYNT++         + 
Sbjct: 567 RGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNT 626

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
             +I+K+M+  G+ P++ TYNI+I      R  K A  L   M+  G+ P   +Y ALIK
Sbjct: 627 TTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIK 686

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDV 632
                    EA  L + +   G+  D  +YN  +    E+G +++
Sbjct: 687 RFYKKKKILEARELFEEMRGHGLVADGEIYNFFVDMCYEEGDVEI 731



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 79/366 (21%), Positives = 142/366 (38%), Gaps = 20/366 (5%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           ++ +IH   +  +   A +   +M S  + P   TY   I+       +     +   M 
Sbjct: 366 YTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMI 425

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEAL---LDQISRCTNPKPFSAFLAACDTMDKPE 412
              LKP + T  TL     KA E+  A +L   + Q+    N   + A +       + +
Sbjct: 426 SRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELD 485

Query: 413 RAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471
            A ++  +MR+K L+ ++  Y  +      VN   + GN+   +   K     EM++A  
Sbjct: 486 TANELLDEMRKKGLQLNVCIYNSM------VNGICKAGNIEQAIKLMK-----EMEVA-- 532

Query: 472 NIQHSHISMKNLLKA---LGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRA 528
            I    I+   ++ A   LG      +L+Q   D        T+N +++           
Sbjct: 533 GIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDG 592

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
             +   M   GI P+A TYN ++    I     + + +   M   G  P + TY  LIK 
Sbjct: 593 DRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKG 652

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
                +  EA  L   +  +G    V  YN ++K+  +K +I     + E+M  + +  D
Sbjct: 653 HCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKKKILEARELFEEMRGHGLVAD 712

Query: 649 PSTCHF 654
               +F
Sbjct: 713 GEIYNF 718


>gi|168004269|ref|XP_001754834.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162693938|gb|EDQ80288.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 504

 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 80/383 (20%), Positives = 155/383 (40%), Gaps = 31/383 (8%)

Query: 319 MQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALE 378
           +Q    +P    ++  I A    +  R   +   +M+     P +++   L    S+ ++
Sbjct: 74  LQGTMFKPDVGCFNMLIDAYGKSKQWREAEKTFHLMKDFQCLPTETSFNVLLAAYSRGVQ 133

Query: 379 LDLAEALLDQISRCTNPKP-------------FSAFLAACDTMDKPERAIKIFAKM-RQK 424
           L+ AE L  ++   +N  P             ++ +L       +  +A   F  M +Q 
Sbjct: 134 LEKAEKLFHEMKE-SNYSPGTVEWMIFSGIATYNTYLEVLGKSGRLSQAEDTFRDMQKQG 192

Query: 425 LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLL 484
           + P + T+ ++ +++G      +  ++F  +  A         +   N+     +   L+
Sbjct: 193 ILPAVNTFTIMINIYGKAYYSDKADDLFRSMRKA---------LCPPNL----YTYTALM 239

Query: 485 KALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIP 541
            A   EG      + F + ++    P   TYN +L +    +    A E+F+ M   G+ 
Sbjct: 240 NAHAREGNCVRAEEIFAELQSVGFIPDVYTYNALLEAYSRGEHPTGAKEVFQAMVEAGVR 299

Query: 542 PNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNL 601
           P+  +YNI+ID          A A+   M   GF P   ++  L+      G   EA  L
Sbjct: 300 PDQVSYNILIDAFGRAGLTADAQAVYDSMKEAGFKPTMKSHMLLLSSYAKAGKVTEAERL 359

Query: 602 LDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVN 661
           +  +   G+  D  ++N++L      GRID +E ++E M  +  +PD ST + + + Y  
Sbjct: 360 VREIENSGVKPDTFMFNSLLSAYGNSGRIDEMESLLESMVSSVAKPDISTLNTLINAYAQ 419

Query: 662 CGFHNSAMEALQVLSMRMLCEEV 684
            G+   A E    L  + L  +V
Sbjct: 420 GGYIEKAEEVFNSLESKGLTPDV 442



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 70/379 (18%), Positives = 141/379 (37%), Gaps = 29/379 (7%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSS---------HTYDGFIRAIVSDRGLR 345
           SF+ ++ A  R      AE+L  +M+     P +          TY+ ++  +     L 
Sbjct: 120 SFNVLLAAYSRGVQLEKAEKLFHEMKESNYSPGTVEWMIFSGIATYNTYLEVLGKSGRLS 179

Query: 346 NGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPK---PFSAFL 402
              +  + MQ+  + P  +T   +     KA   D A+ L   + +   P     ++A +
Sbjct: 180 QAEDTFRDMQKQGILPAVNTFTIMINIYGKAYYSDKADDLFRSMRKALCPPNLYTYTALM 239

Query: 403 AACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI 461
            A        RA +IFA+++     PD+ TY  L   +     P     +F         
Sbjct: 240 NAHAREGNCVRAEEIFAELQSVGFIPDVYTYNALLEAYSRGEHPTGAKEVFQA------- 292

Query: 462 NAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNT---VLHS 518
                 M    ++   +S   L+ A G  G+  +    +   K     PT  +   +L S
Sbjct: 293 ------MVEAGVRPDQVSYNILIDAFGRAGLTADAQAVYDSMKEAGFKPTMKSHMLLLSS 346

Query: 519 LVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQ 578
             +A +   A  + ++++  G+ P+   +N ++             +L+  MV     P 
Sbjct: 347 YAKAGKVTEAERLVREIENSGVKPDTFMFNSLLSAYGNSGRIDEMESLLESMVSSVAKPD 406

Query: 579 TMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIE 638
             T   LI      G  ++A  + + +  +G+  DV+ + +++    ++        I +
Sbjct: 407 ISTLNTLINAYAQGGYIEKAEEVFNSLESKGLTPDVMSWTSLMGAYAQRKLFRKCVSIFQ 466

Query: 639 QMHQNKVQPDPSTCHFVFS 657
           +M +    PD +T     S
Sbjct: 467 KMVKAGCIPDRATAKVFLS 485



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 62/332 (18%), Positives = 132/332 (39%), Gaps = 58/332 (17%)

Query: 254 VALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAE 313
           + + + GK Y +  ++   RS R  +  P N         ++++ +++A  R  N   AE
Sbjct: 202 IMINIYGKAYYSDKADDLFRSMRKAL-CPPNL--------YTYTALMNAHAREGNCVRAE 252

Query: 314 QLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVEC 373
           ++  ++QS+G  P  +TY+  + A           EV + M +  ++P            
Sbjct: 253 EIFAELQSVGFIPDVYTYNALLEAYSRGEHPTGAKEVFQAMVEAGVRP------------ 300

Query: 374 SKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTY 432
                        DQ+S         AF  A  T D    A  ++  M++   +P ++++
Sbjct: 301 -------------DQVSYNI---LIDAFGRAGLTAD----AQAVYDSMKEAGFKPTMKSH 340

Query: 433 ELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGM 492
            LL S +       E   +  +++++              ++       +LL A G  G 
Sbjct: 341 MLLLSSYAKAGKVTEAERLVREIENS-------------GVKPDTFMFNSLLSAYGNSGR 387

Query: 493 IRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNI 549
           I E   L++    S       T NT++++  +     +A E+F  +++ G+ P+  ++  
Sbjct: 388 IDEMESLLESMVSSVAKPDISTLNTLINAYAQGGYIEKAEEVFNSLESKGLTPDVMSWTS 447

Query: 550 MIDCCSIIRCFKSASALVSMMVRDGFYPQTMT 581
           ++   +  + F+   ++   MV+ G  P   T
Sbjct: 448 LMGAYAQRKLFRKCVSIFQKMVKAGCIPDRAT 479


>gi|356540375|ref|XP_003538665.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
           chloroplastic-like [Glycine max]
          Length = 1476

 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 78/334 (23%), Positives = 149/334 (44%), Gaps = 27/334 (8%)

Query: 299 VIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNN 358
           ++   G+     LA ++  + +S  +  +   Y+  +     +       E+L +M++  
Sbjct: 221 ILGVLGKANQEALAVEIFARAES-SVGDTVQVYNAMMGVYARNGRFSKVKELLDLMRERG 279

Query: 359 LKPQDSTIATL--SVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDKPE 412
             P   +  TL  +   S A+E +LA  LL+++ R +  +P    ++  ++AC      E
Sbjct: 280 CVPDLVSFNTLINARMKSGAMEPNLALQLLNEVRR-SGIRPDIITYNTLISACSRESNLE 338

Query: 413 RAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471
            A+ +F+ M   + +PD+ TY  + S++G      +   +F +++S              
Sbjct: 339 EAVAVFSDMESHRCQPDLWTYNAMISVYGRCARARKAEELFKELES-------------K 385

Query: 472 NIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP----TYNTVLHSLVEAQESHR 527
                 ++  +LL A   EG   E ++  C+     G      TYNT++H   +     +
Sbjct: 386 GFFPDAVTYNSLLYAFSREGNT-EKVRDICEEMVKRGFGQDEMTYNTIIHMYGKQGRHDQ 444

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           AM+I++ MK+ G  P+A TY ++ID        + A+ ++S M+  G  P   TY+ALI 
Sbjct: 445 AMQIYRDMKSSGRNPDAVTYTVLIDSLGKASKVEEAANVMSEMLDAGVKPTLHTYSALIC 504

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTIL 621
                G  +EA    + +   GI  D L Y+ +L
Sbjct: 505 AYAKAGKREEAEETFNCMRRSGIKPDRLAYSVML 538



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/212 (21%), Positives = 90/212 (42%), Gaps = 3/212 (1%)

Query: 467 DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQ 523
           ++ R+ I+   I+   L+ A   E  + E +  F D ++    P   TYN ++       
Sbjct: 311 EVRRSGIRPDIITYNTLISACSRESNLEEAVAVFSDMESHRCQPDLWTYNAMISVYGRCA 370

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
            + +A E+FK++++ G  P+A TYN ++   S     +    +   MV+ GF    MTY 
Sbjct: 371 RARKAEELFKELESKGFFPDAVTYNSLLYAFSREGNTEKVRDICEEMVKRGFGQDEMTYN 430

Query: 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
            +I +    G  D+A+ +   +   G   D + Y  ++    +  +++    ++ +M   
Sbjct: 431 TIIHMYGKQGRHDQAMQIYRDMKSSGRNPDAVTYTVLIDSLGKASKVEEAANVMSEMLDA 490

Query: 644 KVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
            V+P   T   +   Y   G    A E    +
Sbjct: 491 GVKPTLHTYSALICAYAKAGKREEAEETFNCM 522



 Score = 67.0 bits (162), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 60/268 (22%), Positives = 116/268 (43%), Gaps = 25/268 (9%)

Query: 412 ERAIKIFA--KMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQV-----DSAKRINAI 464
           +RA++++    +R    P+ R    +  + G  N       +F++      D+ +  NA+
Sbjct: 196 QRALELYECLNLRHWYAPNARMVATILGVLGKANQEALAVEIFARAESSVGDTVQVYNAM 255

Query: 465 EMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVE--A 522
               ARN        +K LL  +   G + +L+             ++NT++++ ++  A
Sbjct: 256 MGVYARNG---RFSKVKELLDLMRERGCVPDLV-------------SFNTLINARMKSGA 299

Query: 523 QESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTY 582
            E + A+++  +++  GI P+  TYN +I  CS     + A A+ S M      P   TY
Sbjct: 300 MEPNLALQLLNEVRRSGIRPDIITYNTLISACSRESNLEEAVAVFSDMESHRCQPDLWTY 359

Query: 583 TALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642
            A+I +        +A  L   +  +G   D + YN++L     +G  + +  I E+M +
Sbjct: 360 NAMISVYGRCARARKAEELFKELESKGFFPDAVTYNSLLYAFSREGNTEKVRDICEEMVK 419

Query: 643 NKVQPDPSTCHFVFSGYVNCGFHNSAME 670
                D  T + +   Y   G H+ AM+
Sbjct: 420 RGFGQDEMTYNTIIHMYGKQGRHDQAMQ 447



 Score = 56.2 bits (134), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 84/198 (42%), Gaps = 6/198 (3%)

Query: 483 LLKALGAEGMIRELIQYFCDSKTPLGTPTYN---TVLHSLVEAQESHRAMEIFKQMKTCG 539
           ++K +G +   R L  Y C +      P      T+L  L +A +   A+EIF + ++  
Sbjct: 186 VVKWVGQQNWQRALELYECLNLRHWYAPNARMVATILGVLGKANQEALAVEIFARAES-S 244

Query: 540 IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDE-- 597
           +      YN M+   +    F     L+ +M   G  P  +++  LI   +  G  +   
Sbjct: 245 VGDTVQVYNAMMGVYARNGRFSKVKELLDLMRERGCVPDLVSFNTLINARMKSGAMEPNL 304

Query: 598 ALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFS 657
           AL LL+ V   GI  D++ YNT++     +  ++    +   M  ++ QPD  T + + S
Sbjct: 305 ALQLLNEVRRSGIRPDIITYNTLISACSRESNLEEAVAVFSDMESHRCQPDLWTYNAMIS 364

Query: 658 GYVNCGFHNSAMEALQVL 675
            Y  C     A E  + L
Sbjct: 365 VYGRCARARKAEELFKEL 382



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 74/384 (19%), Positives = 149/384 (38%), Gaps = 43/384 (11%)

Query: 290  KVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGME 349
            K+ R  ++ +IHA   +     A  +   M   G  P+  + +G ++A++ DR L     
Sbjct: 806  KMDRKVWNALIHAYAFSGCYERARAIFNTMMRDGPSPTVDSVNGLLQALIVDRRLNELYV 865

Query: 350  VLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMD 409
            V++ +Q   LK   S+I  L++E                           AF  A +  +
Sbjct: 866  VIQELQDMGLKISKSSI-LLTLE---------------------------AFAQAGNLFE 897

Query: 410  KPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
                  KI+  M+     P +  Y ++  L        +   M  +++ A      + D+
Sbjct: 898  ----VQKIYNGMKAAGYFPTMHVYRIMLRLLCKCKRVRDVETMLCEMEEA----GFQPDL 949

Query: 469  ARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRA 528
                I +S + +   ++   + G+I + IQ   D+       TYNT++      +     
Sbjct: 950  ---QICNSILKLYLGIEDFKSMGIIYQKIQ---DASLKPDEETYNTLIIMYCRDRRPEEG 1003

Query: 529  MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
              +  +M++ G+ P   TY  +I   +  R ++ A  L   +  +G+      Y  ++K 
Sbjct: 1004 FSLMNKMRSLGLEPKLDTYRSLITAFNKQRMYEQAEELFEELRSNGYKLDRAFYHLMMKT 1063

Query: 589  LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
                GD  +A NLL ++   GI   +   + ++    + G+ +  E +++ +    V  D
Sbjct: 1064 YRTSGDHRKAENLLAIMKESGIEPTISTMHLLMVSYGKSGQPEEAENVLKNLRTTGVVLD 1123

Query: 649  PSTCHFVFSGYVNCGFHNSAMEAL 672
                  V   Y+  G   + +E L
Sbjct: 1124 TLPYSSVIDAYLKKGDFKAGIEKL 1147



 Score = 46.6 bits (109), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 68/334 (20%), Positives = 129/334 (38%), Gaps = 80/334 (23%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           W+++ +I   GR   +  AE+L  +++S G  P + TY+  + A       R G      
Sbjct: 357 WTYNAMISVYGRCARARKAEELFKELESKGFFPDAVTYNSLLYAFS-----REG------ 405

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPER 413
              N  K +D         C + ++    +   D+++       ++  +       + ++
Sbjct: 406 ---NTEKVRDI--------CEEMVKRGFGQ---DEMT-------YNTIIHMYGKQGRHDQ 444

Query: 414 AIKIFAKMRQKLR-PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNN 472
           A++I+  M+   R PD  TY +L    G  +   E  N+ S++          +D     
Sbjct: 445 AMQIYRDMKSSGRNPDAVTYTVLIDSLGKASKVEEAANVMSEM----------LDAGVKP 494

Query: 473 IQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIF 532
             H++ +   L+ A    G  RE                         EA+E+      F
Sbjct: 495 TLHTYSA---LICAYAKAGK-RE-------------------------EAEET------F 519

Query: 533 KQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDY 592
             M+  GI P+   Y++M+D        K A  L   M+R+GF P    Y  ++  L+  
Sbjct: 520 NCMRRSGIKPDRLAYSVMLDFFLRFNEMKKAMGLYHEMIREGFTPDNGLYEVMMHALVRE 579

Query: 593 GDFDEALNLL-DLVSLEGIPHDVLLYNTILKKAC 625
             +D    ++ D+  L G+   V + + ++K  C
Sbjct: 580 NMWDVVDRIIRDMEELSGMNPQV-ISSVLVKGGC 612



 Score = 45.4 bits (106), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 92/452 (20%), Positives = 162/452 (35%), Gaps = 89/452 (19%)

Query: 201  KLAVWQKNLSAV-----------HEIWEDYIKHYSLSIFSLRKFVWSFTRLRD-----LK 244
            KL +WQK  S V            ++W   I  Y+ S    R      T +RD     + 
Sbjct: 786  KLKIWQKAESLVGSLRQRCSKMDRKVWNALIHAYAFSGCYERARAIFNTMMRDGPSPTVD 845

Query: 245  SAYETLQHMVALAMMGKLY--INRTSEGRLRSSRLDIPIPLNAL---------------- 286
            S    LQ ++    + +LY  I    +  L+ S+  I + L A                 
Sbjct: 846  SVNGLLQALIVDRRLNELYVVIQELQDMGLKISKSSILLTLEAFAQAGNLFEVQKIYNGM 905

Query: 287  ------PVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVS 340
                  P M V R     ++  C R ++    E ++ +M+  G QP     +  ++  + 
Sbjct: 906  KAAGYFPTMHVYRIMLR-LLCKCKRVRD---VETMLCEMEEAGFQPDLQICNSILKLYLG 961

Query: 341  DRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSA 400
                ++   + + +Q  +LKP + T  TL                   I  C +      
Sbjct: 962  IEDFKSMGIIYQKIQDASLKPDEETYNTLI------------------IMYCRD------ 997

Query: 401  FLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGN-MFSQVDSA 458
                     +PE    +  KMR   L P + TY  L + F N    YE+   +F ++   
Sbjct: 998  --------RRPEEGFSLMNKMRSLGLEPKLDTYRSLITAF-NKQRMYEQAEELFEEL--- 1045

Query: 459  KRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHS 518
             R N  ++D A       H+ MK   +  G       L+    +S       T + ++ S
Sbjct: 1046 -RSNGYKLDRA-----FYHLMMKTY-RTSGDHRKAENLLAIMKESGIEPTISTMHLLMVS 1098

Query: 519  LVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQ 578
              ++ +   A  + K ++T G+  +   Y+ +ID       FK+    ++ M   G  P 
Sbjct: 1099 YGKSGQPEEAENVLKNLRTTGVVLDTLPYSSVIDAYLKKGDFKAGIEKLTEMKEAGIEPD 1158

Query: 579  TMTYTALIKILLDYGDFDEALNLLDLVSLEGI 610
               +T  I+        +EA+ LL+ +   G 
Sbjct: 1159 HRIWTCFIRAATLSEGTNEAIVLLNALQDAGF 1190



 Score = 45.1 bits (105), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 45/220 (20%), Positives = 83/220 (37%), Gaps = 3/220 (1%)

Query: 459  KRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIREL---IQYFCDSKTPLGTPTYNTV 515
            +R  AI   M R+    +  S+  LL+AL  +  + EL   IQ   D    +   +    
Sbjct: 826  ERARAIFNTMMRDGPSPTVDSVNGLLQALIVDRRLNELYVVIQELQDMGLKISKSSILLT 885

Query: 516  LHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGF 575
            L +  +A       +I+  MK  G  P    Y IM+      +  +    ++  M   GF
Sbjct: 886  LEAFAQAGNLFEVQKIYNGMKAAGYFPTMHVYRIMLRLLCKCKRVRDVETMLCEMEEAGF 945

Query: 576  YPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEF 635
             P      +++K+ L   DF     +   +    +  D   YNT++   C   R +    
Sbjct: 946  QPDLQICNSILKLYLGIEDFKSMGIIYQKIQDASLKPDEETYNTLIIMYCRDRRPEEGFS 1005

Query: 636  IIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
            ++ +M    ++P   T   + + +     +  A E  + L
Sbjct: 1006 LMNKMRSLGLEPKLDTYRSLITAFNKQRMYEQAEELFEEL 1045



 Score = 43.5 bits (101), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 33/145 (22%), Positives = 63/145 (43%)

Query: 531  IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590
            I+++++   + P+  TYN +I      R  +   +L++ M   G  P+  TY +LI    
Sbjct: 971  IYQKIQDASLKPDEETYNTLIIMYCRDRRPEEGFSLMNKMRSLGLEPKLDTYRSLITAFN 1030

Query: 591  DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650
                +++A  L + +   G   D   Y+ ++K     G     E ++  M ++ ++P  S
Sbjct: 1031 KQRMYEQAEELFEELRSNGYKLDRAFYHLMMKTYRTSGDHRKAENLLAIMKESGIEPTIS 1090

Query: 651  TCHFVFSGYVNCGFHNSAMEALQVL 675
            T H +   Y   G    A   L+ L
Sbjct: 1091 TMHLLMVSYGKSGQPEEAENVLKNL 1115



 Score = 39.7 bits (91), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 55/291 (18%), Positives = 113/291 (38%), Gaps = 38/291 (13%)

Query: 151 RYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLS 210
           R GI P +  YN+ + AC++  ++  A      M+S     +  TY  ++ +        
Sbjct: 314 RSGIRPDIITYNTLISACSRESNLEEAVAVFSDMESHRCQPDLWTYNAMISVYGRCARAR 373

Query: 211 AVHEIWEDY-IKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSE 269
              E++++   K +     +    +++F+R  + +   +  + MV               
Sbjct: 374 KAEELFKELESKGFFPDAVTYNSLLYAFSREGNTEKVRDICEEMVK-------------- 419

Query: 270 GRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSH 329
              R    D                +++ +IH  G+      A Q+   M+S G  P + 
Sbjct: 420 ---RGFGQD--------------EMTYNTIIHMYGKQGRHDQAMQIYRDMKSSGRNPDAV 462

Query: 330 TYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI 389
           TY   I ++     +     V+  M    +KP   T + L    +KA + + AE   + +
Sbjct: 463 TYTVLIDSLGKASKVEEAANVMSEMLDAGVKPTLHTYSALICAYAKAGKREEAEETFNCM 522

Query: 390 SRCTNPKP----FSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELL 435
            R +  KP    +S  L      ++ ++A+ ++ +M R+   PD   YE++
Sbjct: 523 RR-SGIKPDRLAYSVMLDFFLRFNEMKKAMGLYHEMIREGFTPDNGLYEVM 572


>gi|255541015|ref|XP_002511572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550687|gb|EEF52174.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 735

 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 120/553 (21%), Positives = 221/553 (39%), Gaps = 39/553 (7%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y  +M  L + GY  +A   +Y   +  GI P +  +   + +  +    + A   L+ M
Sbjct: 114 YNAIMNILVEYGYFNQAHK-VYLRMKHEGIAPDVCTFTIRIKSFCRTKRPLAALRLLNNM 172

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLK 244
            S+    N V Y  ++    +++N     E +E + K   L IF     + +F +L  + 
Sbjct: 173 PSQGCELNAVVYCTVIS-GFYEENYQV--EAYELFNKMLRLGIFP---HIATFNKLMHIL 226

Query: 245 SAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACG 304
                LQ        G+  +N+  +  +  +     I +  L    VL  + S V+ A  
Sbjct: 227 CKKGHLQE-------GEKLLNKVLKNGVCPNLFTFNIFIQGLCRKGVLEGANSKVVEA-- 277

Query: 305 RTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDS 364
                   E  + +M + GL+P   TY+  I        +++   +LK  +     P + 
Sbjct: 278 --------ENYLHKMVNKGLEPDDFTYNTIIYGYSKVGKIQDASRILKDAKFKGFVPDEF 329

Query: 365 TIATLSVECSKALELDLAEALLDQ-ISRCTNPKP--FSAFLAACDTMDKPERAIKIFAKM 421
           T  +L +   +  ++D A AL ++ + +   P    ++  +          +A+++   M
Sbjct: 330 TYCSLIIGVCQDGDIDHALALFEEALGKGLKPSIVLYNTLIKGLSQQGLVLKALQLMNDM 389

Query: 422 -RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISM 480
            ++ + PDI TY L+ +    +    +  N+         +NA        +I   +  +
Sbjct: 390 SKEGMSPDIWTYNLVINGLCKMGCVSDANNL---------LNAAIAKGYLPDIFTFNTLI 440

Query: 481 KNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGI 540
               K L  +  I  L   +    TP    TYN++L+ L +A +    ME FK +   G 
Sbjct: 441 DGYCKRLKMDNAIGILDSMWSHGVTP-DVITYNSILNGLCKAAKPEDVMETFKMIMEKGC 499

Query: 541 PPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALN 600
            PN  TYNI+I+     R    A  L+  +   G  P  +++  +I    + GD DEA  
Sbjct: 500 LPNIITYNILIESLCKARKVTEALDLLEEIRNRGLIPDPVSFGTVISGFCNNGDLDEAYQ 559

Query: 601 LLDLVSLE-GIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
           L   +  +  I H V  YN ++    EK  +D+ + +  +M      PD  T   +  G+
Sbjct: 560 LFRRMEQQYRICHTVATYNIMINAFSEKLDMDMAQKLFHEMGDKGCDPDSYTYRVMIDGF 619

Query: 660 VNCGFHNSAMEAL 672
              G  NS  + L
Sbjct: 620 CKVGNVNSGYDFL 632



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 94/442 (21%), Positives = 173/442 (39%), Gaps = 63/442 (14%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +F+  I +  RT+    A +L+  M S G + ++  Y   I     +       E+   M
Sbjct: 148 TFTIRIKSFCRTKRPLAALRLLNNMPSQGCELNAVVYCTVISGFYEENYQVEAYELFNKM 207

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAAC------ 405
            +  + P  +T   L     K   L   E LL+++ +   C N   F+ F+         
Sbjct: 208 LRLGIFPHIATFNKLMHILCKKGHLQEGEKLLNKVLKNGVCPNLFTFNIFIQGLCRKGVL 267

Query: 406 -DTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINA 463
                K   A     KM  K L PD  TY  +  ++G           +S+V   +  + 
Sbjct: 268 EGANSKVVEAENYLHKMVNKGLEPDDFTYNTI--IYG-----------YSKVGKIQDASR 314

Query: 464 IEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPT---YNTVLHSLV 520
           I  D           +  +L+  +  +G I   +  F ++      P+   YNT++  L 
Sbjct: 315 ILKDAKFKGFVPDEFTYCSLIIGVCQDGDIDHALALFEEALGKGLKPSIVLYNTLIKGLS 374

Query: 521 EAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTM 580
           +     +A+++   M   G+ P+  TYN++I+    + C   A+ L++  +  G+ P   
Sbjct: 375 QQGLVLKALQLMNDMSKEGMSPDIWTYNLVINGLCKMGCVSDANNLLNAAIAKGYLPDIF 434

Query: 581 TYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKAC--------------- 625
           T+  LI         D A+ +LD +   G+  DV+ YN+IL   C               
Sbjct: 435 TFNTLIDGYCKRLKMDNAIGILDSMWSHGVTPDVITYNSILNGLCKAAKPEDVMETFKMI 494

Query: 626 -EKGRI-DVIEF------------------IIEQMHQNKVQPDPSTCHFVFSGYVNCGFH 665
            EKG + ++I +                  ++E++    + PDP +   V SG+ N G  
Sbjct: 495 MEKGCLPNIITYNILIESLCKARKVTEALDLLEEIRNRGLIPDPVSFGTVISGFCNNGDL 554

Query: 666 NSAMEALQVLSMRM-LCEEVST 686
           + A +  + +  +  +C  V+T
Sbjct: 555 DEAYQLFRRMEQQYRICHTVAT 576



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 67/318 (21%), Positives = 128/318 (40%), Gaps = 66/318 (20%)

Query: 395 PKPFSAFLAACDTMDKPERAIKIFAKMRQK--LRPDIRTYELLFSLFGNVNAPYEEGNMF 452
           PK  +A L        P +A+ IF  ++++   +    TY+ +    G            
Sbjct: 7   PKHVAAVLK---YQKDPLKALSIFNSVKKEDGFKHTFLTYKRMIEKLG----------FH 53

Query: 453 SQVDSAKRINAIEMDMARNN--IQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP 510
            + D+ +R+  +EM +  +N  ++  ++S    ++  G +G ++E +  F         P
Sbjct: 54  GEFDAMERV-LMEMRLNVDNSLLEGVYVSA---MRNYGRKGKVQEAVDVFERMDFYNCEP 109

Query: 511 T---YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC-------------- 553
           +   YN +++ LVE    ++A +++ +MK  GI P+  T+ I I                
Sbjct: 110 SIFSYNAIMNILVEYGYFNQAHKVYLRMKHEGIAPDVCTFTIRIKSFCRTKRPLAALRLL 169

Query: 554 ---------------CSIIRCFK------SASALVSMMVRDGFYPQTMTYTALIKILLDY 592
                          C++I  F        A  L + M+R G +P   T+  L+ IL   
Sbjct: 170 NNMPSQGCELNAVVYCTVISGFYEENYQVEAYELFNKMLRLGIFPHIATFNKLMHILCKK 229

Query: 593 GDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG-------RIDVIEFIIEQMHQNKV 645
           G   E   LL+ V   G+  ++  +N  ++  C KG       ++   E  + +M    +
Sbjct: 230 GHLQEGEKLLNKVLKNGVCPNLFTFNIFIQGLCRKGVLEGANSKVVEAENYLHKMVNKGL 289

Query: 646 QPDPSTCHFVFSGYVNCG 663
           +PD  T + +  GY   G
Sbjct: 290 EPDDFTYNTIIYGYSKVG 307



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 96/479 (20%), Positives = 183/479 (38%), Gaps = 77/479 (16%)

Query: 127 LMMQALCKGGYLE-------EASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANL 179
           + +Q LC+ G LE       EA N ++ +  + G+ P    YN+ +   +K+  +  A+ 
Sbjct: 256 IFIQGLCRKGVLEGANSKVVEAENYLHKMVNK-GLEPDDFTYNTIIYGYSKVGKIQDASR 314

Query: 180 CLDLMDSRMVG--KNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYSLSIFSLRKFVWS 236
            L   D++  G   +E TY  L+       ++     ++E+ + K    SI      +  
Sbjct: 315 ILK--DAKFKGFVPDEFTYCSLIIGVCQDGDIDHALALFEEALGKGLKPSIVLYNTLIKG 372

Query: 237 FTRLRDLKSAYETLQHMVALAMMGKLYI-NRTSEGRLR-------SSRLDIPIPLNALPV 288
            ++   +  A + +  M    M   ++  N    G  +       ++ L+  I    LP 
Sbjct: 373 LSQQGLVLKALQLMNDMSKEGMSPDIWTYNLVINGLCKMGCVSDANNLLNAAIAKGYLPD 432

Query: 289 MKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGM 348
           +    ++F+ +I    +      A  ++  M S G+ P   TY+  +  +       + M
Sbjct: 433 I----FTFNTLIDGYCKRLKMDNAIGILDSMWSHGVTPDVITYNSILNGLCKAAKPEDVM 488

Query: 349 EVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI-SRCTNPKPFS---AFLAA 404
           E  K++ +    P   T   L     KA ++  A  LL++I +R   P P S        
Sbjct: 489 ETFKMIMEKGCLPNIITYNILIESLCKARKVTEALDLLEEIRNRGLIPDPVSFGTVISGF 548

Query: 405 CDTMDKPERAIKIFAKMRQKLR--PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRIN 462
           C+  D  E A ++F +M Q+ R    + TY ++              N FS+        
Sbjct: 549 CNNGDLDE-AYQLFRRMEQQYRICHTVATYNIMI-------------NAFSE-------- 586

Query: 463 AIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEA 522
            ++MDMA+            L   +G +G         CD  +     TY  ++    + 
Sbjct: 587 KLDMDMAQK-----------LFHEMGDKG---------CDPDSY----TYRVMIDGFCKV 622

Query: 523 QESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMT 581
              +   +   +    G  P+  T+  +I+C  +      A  +V +MVR G  P+ + 
Sbjct: 623 GNVNSGYDFLLKEIEIGFVPSLTTFGRVINCLCVQHRVHEAVGIVHLMVRTGVVPEAVV 681


>gi|356524104|ref|XP_003530672.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Glycine max]
          Length = 742

 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/369 (20%), Positives = 163/369 (44%), Gaps = 14/369 (3%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           S+S ++    + +  G   +LM ++Q  GL+P+ +TY+  I  +     +    +VL++M
Sbjct: 289 SYSVIVDGYCQVEQLGKVLKLMEELQRKGLKPNQYTYNSIISFLCKTGRVVEAEQVLRVM 348

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERA 414
           +   + P +    TL     K+  + +   L D++ R      F  + +    + +  + 
Sbjct: 349 KNQRIFPDNVVYTTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKV 408

Query: 415 I---KIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           +   K+F++M  K L+PD  TY  L   +       E  ++ +Q+        +E  +  
Sbjct: 409 VEARKLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQM--------VEKGLTP 460

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAME 530
           N + ++  ++ + L   G   +  EL+    +        TYN +++ L +     +A++
Sbjct: 461 NVVTYT--ALVDGLCKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVK 518

Query: 531 IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590
           + ++M   G  P+  TY  ++D    +     A  L+ +M+  G  P  +T+  L+    
Sbjct: 519 LMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFC 578

Query: 591 DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650
             G  ++   L+  +  +GI  +   +N+++K+ C +  +     I + MH   V PD +
Sbjct: 579 MSGMLEDGERLIKWMLDKGIMPNATTFNSLMKQYCIRNNMRATIEIYKGMHAQGVVPDTN 638

Query: 651 TCHFVFSGY 659
           T + +  G+
Sbjct: 639 TYNILIKGH 647



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 81/330 (24%), Positives = 139/330 (42%), Gaps = 20/330 (6%)

Query: 382 AEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKM----RQKLRPDIRTYELLFS 437
           A +LL Q+    N     ++    D   + E+  K+   M    R+ L+P+  TY  + S
Sbjct: 271 AHSLLIQMEFRGNVPDVVSYSVIVDGYCQVEQLGKVLKLMEELQRKGLKPNQYTYNSIIS 330

Query: 438 LFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELI 497
                           +V  A+++  +   M    I   ++    L+   G  G +    
Sbjct: 331 FLCKT----------GRVVEAEQVLRV---MKNQRIFPDNVVYTTLISGFGKSGNVSVEY 377

Query: 498 QYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCC 554
           + F + K     P   TY +++H L +A +   A ++F +M + G+ P+  TY  +ID  
Sbjct: 378 KLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDEVTYTALIDGY 437

Query: 555 SIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDV 614
                 K A +L + MV  G  P  +TYTAL+  L   G+ D A  LL  +S +G+  +V
Sbjct: 438 CKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEMSEKGLQPNV 497

Query: 615 LLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQV 674
             YN ++   C+ G I+    ++E+M      PD  T   +   Y   G    A E L++
Sbjct: 498 CTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHELLRI 557

Query: 675 LSMRMLCEEVSTLEEKRSDFEDLILAEDSE 704
           +  + L   + T     + F    + ED E
Sbjct: 558 MLDKGLQPTIVTFNVLMNGFCMSGMLEDGE 587



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 77/341 (22%), Positives = 136/341 (39%), Gaps = 20/341 (5%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ +IH   +      A +L  +M S GL+P   TY   I        ++    +   M
Sbjct: 394 TYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQM 453

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRC---TNPKPFSAFLAACDTMDKP 411
            +  L P   T   L     K  E+D+A  LL ++S      N   ++A +     +   
Sbjct: 454 VEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGNI 513

Query: 412 ERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           E+A+K+  +M      PD  TY  +   +  +           ++  A  +  I +D   
Sbjct: 514 EQAVKLMEEMDLAGFFPDTITYTTIMDAYCKM----------GEMAKAHELLRIMLD--- 560

Query: 471 NNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHR 527
             +Q + ++   L+      GM+ +   LI++  D        T+N+++           
Sbjct: 561 KGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNATTFNSLMKQYCIRNNMRA 620

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
            +EI+K M   G+ P+  TYNI+I      R  K A  L   MV  GF     +Y +LIK
Sbjct: 621 TIEIYKGMHAQGVVPDTNTYNILIKGHCKARNMKEAWFLHKEMVEKGFSLTAASYNSLIK 680

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
                  F+EA  L + +   G   +  +Y+  +    E+G
Sbjct: 681 GFYKRKKFEEARKLFEEMRTHGFIAEKEIYDIFVDVNYEEG 721



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 77/168 (45%), Gaps = 3/168 (1%)

Query: 509 TPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVS 568
           T +YN +LH L +  +   A  +  QM+  G  P+  +Y++++D    +        L+ 
Sbjct: 252 TVSYNIILHLLCQLGKVKEAHSLLIQMEFRGNVPDVVSYSVIVDGYCQVEQLGKVLKLME 311

Query: 569 MMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
            + R G  P   TY ++I  L   G   EA  +L ++  + I  D ++Y T++    + G
Sbjct: 312 ELQRKGLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQRIFPDNVVYTTLISGFGKSG 371

Query: 629 RIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
            + V   + ++M + K+ PD  T   +  G    G     +EA ++ S
Sbjct: 372 NVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAG---KVVEARKLFS 416



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/136 (22%), Positives = 62/136 (45%)

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A  +F++    G+  N  +YNI++     +   K A +L+  M   G  P  ++Y+ ++ 
Sbjct: 236 AFRVFREYSEVGVCWNTVSYNIILHLLCQLGKVKEAHSLLIQMEFRGNVPDVVSYSVIVD 295

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
                    + L L++ +  +G+  +   YN+I+   C+ GR+   E ++  M   ++ P
Sbjct: 296 GYCQVEQLGKVLKLMEELQRKGLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQRIFP 355

Query: 648 DPSTCHFVFSGYVNCG 663
           D      + SG+   G
Sbjct: 356 DNVVYTTLISGFGKSG 371



 Score = 39.3 bits (90), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 25/103 (24%), Positives = 51/103 (49%), Gaps = 1/103 (0%)

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
           M EK +  N   Y  ++  LCK G ++ A+ L++ + E+ G+ P +  YN+ +    K+ 
Sbjct: 453 MVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEMSEK-GLQPNVCTYNALINGLCKVG 511

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEI 215
           ++  A   ++ MD      + +TYT ++        ++  HE+
Sbjct: 512 NIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHEL 554


>gi|255551759|ref|XP_002516925.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223544013|gb|EEF45539.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 901

 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 97/420 (23%), Positives = 167/420 (39%), Gaps = 37/420 (8%)

Query: 273 RSSRLDIPIPL------NALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQP 326
           R  RLD  + L      N L    VL   ++  I   G+     +A +   +++S GL P
Sbjct: 245 REGRLDAALSLLDEMKSNCLHADIVL---YNVCIDCFGKAGKVDMAWKFFHEIKSHGLLP 301

Query: 327 SSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALL 386
              TY   I  +     L   +E+ + M+QN   P      T+ +    A + D A +LL
Sbjct: 302 DDVTYTSMIGVLCKGNRLDEAVEIFEQMEQNRNVPCAYAYNTMIMGYGSAGKFDEAYSLL 361

Query: 387 D-QISRCTNPK--PFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLF---G 440
           + Q +R   P    ++  L       +   A++ F +M++   P++ TY +L  +    G
Sbjct: 362 ERQKARGCIPSVIAYNCILTCLGKKGRLGEALRTFEEMKKDAAPNLSTYNVLIDMLCKAG 421

Query: 441 NVNAPY------EEGNMFSQVDS----------AKRIN---AIEMDMARNNIQHSHISMK 481
            V A +      +E  +F  V +          AK+++   +I   M         ++  
Sbjct: 422 EVEAAFKVRDAMKEAGLFPNVMTVNIMIDRLCKAKKLDEACSIFEGMNHKICSPDEVTFC 481

Query: 482 NLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTC 538
           +L+  LG +G + +   L +   DS        Y +++ S  +        +IFK+M   
Sbjct: 482 SLIDGLGKQGRVDDAYRLYEQMLDSDKIPNAVVYTSLIKSFFKCGRKEDGHKIFKEMIHR 541

Query: 539 GIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEA 598
           G  P+    N  +DC           AL   +   GF P  M+Y+ LI  L+  G   E 
Sbjct: 542 GCSPDLRLLNAYMDCVFKAGETGKGRALFEEIKSRGFIPDVMSYSILIHGLVKAGFARET 601

Query: 599 LNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
             L   +  +G   D   YNT +   C+ G+++    ++E+M     QP   T   V  G
Sbjct: 602 YELFYAMKEQGCVLDTHAYNTFIDGFCKSGKVNKAYQLLEEMKTKGRQPTVVTYGSVIDG 661



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 109/522 (20%), Positives = 197/522 (37%), Gaps = 84/522 (16%)

Query: 108 ETWRMMEE--KEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFL 165
           E  R  EE  K+   N   Y +++  LCK G +E A  +   + E  G++P +   N  +
Sbjct: 391 EALRTFEEMKKDAAPNLSTYNVLIDMLCKAGEVEAAFKVRDAMKEA-GLFPNVMTVNIMI 449

Query: 166 GACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSL 225
               K   +  A    + M+ ++   +EVT+  L+     Q  +   + ++E  +    +
Sbjct: 450 DRLCKAKKLDEACSIFEGMNHKICSPDEVTFCSLIDGLGKQGRVDDAYRLYEQMLDSDKI 509

Query: 226 -SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLN 284
            +       + SF +    +  ++  + M          I+R     LR         LN
Sbjct: 510 PNAVVYTSLIKSFFKCGRKEDGHKIFKEM----------IHRGCSPDLR--------LLN 551

Query: 285 ALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGL 344
           A          + D +   G T   G    L  +++S G  P   +Y   I  +V     
Sbjct: 552 A----------YMDCVFKAGET---GKGRALFEEIKSRGFIPDVMSYSILIHGLVKAGFA 598

Query: 345 RNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAA 404
           R   E+   M++                            +LD          ++ F+  
Sbjct: 599 RETYELFYAMKEQG-------------------------CVLD-------THAYNTFIDG 626

Query: 405 CDTMDKPERAIKIFAKMRQKLR-PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINA 463
                K  +A ++  +M+ K R P + TY  +      ++   E   +F +  S    N 
Sbjct: 627 FCKSGKVNKAYQLLEEMKTKGRQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKS----NG 682

Query: 464 IEMDMARNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLV 520
           +E+++         +   +L+   G  G I E   +++            T+N +L +LV
Sbjct: 683 LELNV---------VIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALV 733

Query: 521 EAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTM 580
           +A+E + A+  F+ MK     PN  TY+I+I+    +R F  A      M + G  P T+
Sbjct: 734 KAEEINEALVCFQNMKNLKGTPNHITYSILINGLCRVRKFNKAFVFWQEMQKQGLKPNTI 793

Query: 581 TYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILK 622
           TYT +I  L   G+  EA +L +     G   D   YN I++
Sbjct: 794 TYTTMIAGLAKAGNIAEASSLFERFKANGGVPDSASYNAIIE 835



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 79/380 (20%), Positives = 144/380 (37%), Gaps = 30/380 (7%)

Query: 313 EQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVE 372
           EQ++ +M   G  PS+ T    I + +    LR G ++++ M++   +P  S   TL   
Sbjct: 148 EQILGEMSIAGFGPSTKTCIELILSCIKSNKLREGFDLIQCMRKFKFRPAFSAYTTLIGA 207

Query: 373 CSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPER---AIKIFAKMRQK-LRPD 428
            S   E D+   L  Q+           F        +  R   A+ +  +M+   L  D
Sbjct: 208 LSSVQESDIMLTLFHQMQELGYEVSVHLFTTVIRVFAREGRLDAALSLLDEMKSNCLHAD 267

Query: 429 IRTYELLFSLFGNVNAPYEEGNMFSQVDS-------------------AKRIN-AIEM-- 466
           I  Y +    FG           F ++ S                     R++ A+E+  
Sbjct: 268 IVLYNVCIDCFGKAGKVDMAWKFFHEIKSHGLLPDDVTYTSMIGVLCKGNRLDEAVEIFE 327

Query: 467 DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPT---YNTVLHSLVEAQ 523
            M +N       +   ++   G+ G   E        K     P+   YN +L  L +  
Sbjct: 328 QMEQNRNVPCAYAYNTMIMGYGSAGKFDEAYSLLERQKARGCIPSVIAYNCILTCLGKKG 387

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
               A+  F++MK     PN +TYN++ID        ++A  +   M   G +P  MT  
Sbjct: 388 RLGEALRTFEEMKK-DAAPNLSTYNVLIDMLCKAGEVEAAFKVRDAMKEAGLFPNVMTVN 446

Query: 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
            +I  L      DEA ++ + ++ +    D + + +++    ++GR+D    + EQM  +
Sbjct: 447 IMIDRLCKAKKLDEACSIFEGMNHKICSPDEVTFCSLIDGLGKQGRVDDAYRLYEQMLDS 506

Query: 644 KVQPDPSTCHFVFSGYVNCG 663
              P+      +   +  CG
Sbjct: 507 DKIPNAVVYTSLIKSFFKCG 526



 Score = 65.9 bits (159), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 78/350 (22%), Positives = 140/350 (40%), Gaps = 26/350 (7%)

Query: 319 MQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALE 378
           M+  GL P+  T +  I  +   + L     + + M      P + T  +L     K   
Sbjct: 433 MKEAGLFPNVMTVNIMIDRLCKAKKLDEACSIFEGMNHKICSPDEVTFCSLIDGLGKQGR 492

Query: 379 LDLAEALLDQI---SRCTNPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYEL 434
           +D A  L +Q+    +  N   +++ + +     + E   KIF +M  +   PD+R   L
Sbjct: 493 VDDAYRLYEQMLDSDKIPNAVVYTSLIKSFFKCGRKEDGHKIFKEMIHRGCSPDLR---L 549

Query: 435 LFSLFGNVNAPYEEGN---MFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEG 491
           L +    V    E G    +F ++ S   I          ++    I +  L+KA    G
Sbjct: 550 LNAYMDCVFKAGETGKGRALFEEIKSRGFIP---------DVMSYSILIHGLVKA----G 596

Query: 492 MIRELIQYFCDSKTP---LGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYN 548
             RE  + F   K     L T  YNT +    ++ + ++A ++ ++MKT G  P   TY 
Sbjct: 597 FARETYELFYAMKEQGCVLDTHAYNTFIDGFCKSGKVNKAYQLLEEMKTKGRQPTVVTYG 656

Query: 549 IMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLE 608
            +ID  + I     A  L      +G     + Y++LI      G  DEA  +++ +  +
Sbjct: 657 SVIDGLAKIDRLDEAYMLFEEAKSNGLELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQK 716

Query: 609 GIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
           G+  +V  +N +L    +   I+      + M   K  P+  T   + +G
Sbjct: 717 GLTPNVYTWNCLLDALVKAEEINEALVCFQNMKNLKGTPNHITYSILING 766



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 110/587 (18%), Positives = 222/587 (37%), Gaps = 43/587 (7%)

Query: 109 TWRMMEE-KEIGL--NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFL 165
            W+   E K  GL  ++  Y  M+  LCKG  L+EA  +   + +   + P    YN+ +
Sbjct: 287 AWKFFHEIKSHGLLPDDVTYTSMIGVLCKGNRLDEAVEIFEQMEQNRNV-PCAYAYNTMI 345

Query: 166 GACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSL 225
                      A   L+   +R    + + Y  +L     +  L      +E+  K  + 
Sbjct: 346 MGYGSAGKFDEAYSLLERQKARGCIPSVIAYNCILTCLGKKGRLGEALRTFEEMKKDAAP 405

Query: 226 SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRL-RSSRLDIPIPLN 284
           ++ +    +    +  ++++A++    M    +   +        RL ++ +LD    + 
Sbjct: 406 NLSTYNVLIDMLCKAGEVEAAFKVRDAMKEAGLFPNVMTVNIMIDRLCKAKKLDEACSIF 465

Query: 285 ALPVMKVL---RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSD 341
                K+      +F  +I   G+      A +L  QM      P++  Y   I++    
Sbjct: 466 EGMNHKICSPDEVTFCSLIDGLGKQGRVDDAYRLYEQMLDSDKIPNAVVYTSLIKSFFKC 525

Query: 342 RGLRNGMEVLKIMQQNNLKPQDSTIATLSVECS-KALELDLAEALLDQI-SRCTNPK--P 397
               +G ++ K M      P D  +    ++C  KA E     AL ++I SR   P    
Sbjct: 526 GRKEDGHKIFKEMIHRGCSP-DLRLLNAYMDCVFKAGETGKGRALFEEIKSRGFIPDVMS 584

Query: 398 FSAFLAACDTMDKPERAIKIFAKMR-QKLRPDIRTYELLFSLF---GNVNAPYEEGNMFS 453
           +S  +             ++F  M+ Q    D   Y      F   G VN  Y+   +  
Sbjct: 585 YSILIHGLVKAGFARETYELFYAMKEQGCVLDTHAYNTFIDGFCKSGKVNKAYQ---LLE 641

Query: 454 QVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKT---PLGTP 510
           ++ +  R             Q + ++  +++  L     + E    F ++K+    L   
Sbjct: 642 EMKTKGR-------------QPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGLELNVV 688

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSM- 569
            Y++++    +      A  I +++   G+ PN  T+N ++D  ++++  +   ALV   
Sbjct: 689 IYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLD--ALVKAEEINEALVCFQ 746

Query: 570 -MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
            M      P  +TY+ LI  L     F++A      +  +G+  + + Y T++    + G
Sbjct: 747 NMKNLKGTPNHITYSILINGLCRVRKFNKAFVFWQEMQKQGLKPNTITYTTMIAGLAKAG 806

Query: 629 RIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
            I     + E+   N   PD ++ + +  G     +   AMEA ++ 
Sbjct: 807 NIAEASSLFERFKANGGVPDSASYNAIIEGL---SYSRRAMEAYKIF 850


>gi|218191892|gb|EEC74319.1| hypothetical protein OsI_09597 [Oryza sativa Indica Group]
          Length = 1167

 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 113/579 (19%), Positives = 234/579 (40%), Gaps = 63/579 (10%)

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
           M E+  GLN   Y +++  LC+ G +EEA      + E YG+ P    Y + +    K  
Sbjct: 143 MRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDM-EDYGLVPDGFTYGALINGLCKSR 201

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRK 232
               A   LD M    +  N V Y  L+                                
Sbjct: 202 RSNEAKALLDEMSCAELKPNVVVYANLID------------------------------- 230

Query: 233 FVWSFTRLRDLKSAYETLQHMVALAMM-GKLYINRTSEGRLRSSRLDIPIPLNALPVMKV 291
               F R  +   A++ ++ MVA  +   K+  +    G  +  ++D      +L + ++
Sbjct: 231 ---GFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRA----SLLLKQM 283

Query: 292 LRWS-------FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGL 344
           +R S       ++ +I    R  N   A +L+ +M++ G+ P+ +TY   I  +      
Sbjct: 284 VRDSHRPDTITYNLIIEGHFRHHNKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEP 343

Query: 345 RNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSA 400
               ++L+ M    LKP     A L     +   + LA  + D++++  N  P    +++
Sbjct: 344 EKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTK-VNVLPDLYCYNS 402

Query: 401 FLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAK 459
            +     + + E + K FA+M+++ L P+  TY       G ++   + G++ S     +
Sbjct: 403 LIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYS------GLIHGYLKNGDLESAEQLVQ 456

Query: 460 RINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSL 519
           R+  ++  +  N++ +  + +++  K+   E  +    +   D    L    Y  ++H+L
Sbjct: 457 RM--LDTGLKPNDVIYIDL-LESYFKSDDIE-KVSSTFKSMLDQGVMLDNRIYGILIHNL 512

Query: 520 VEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQT 579
             +     A  +  +++  G  P+   Y+ +I         + A  ++  M + G  P  
Sbjct: 513 SSSGNMEAAFRVLSEIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNI 572

Query: 580 MTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQ 639
           + Y ALI  L   GD   A N+ + +  +G+  + + Y +++  +C+ G I    ++  +
Sbjct: 573 VCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNE 632

Query: 640 MHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678
           M    + PD      + +G  + G    AM  ++ + +R
Sbjct: 633 MLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLR 671



 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 89/391 (22%), Positives = 155/391 (39%), Gaps = 53/391 (13%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           +++S +I A  + +    A++++++M+  G   ++ TY+  I  +     +       K 
Sbjct: 118 YTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKD 177

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPER 413
           M+   L P   T   L     K+   + A+ALLD++S C                     
Sbjct: 178 MEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMS-CA-------------------- 216

Query: 414 AIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNI 473
                     +L+P++  Y  L   F        EGN     D A ++     +M    +
Sbjct: 217 ----------ELKPNVVVYANLIDGF------MREGN----ADEAFKMIK---EMVAAGV 253

Query: 474 QHSHISMKNLLKALGAEGMIRE----LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAM 529
           Q + I+  NL++ L   G +      L Q   DS  P  T TYN ++           A 
Sbjct: 254 QPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRP-DTITYNLIIEGHFRHHNKKDAF 312

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
            +  +M+  GI PN  TY+IMI         + AS L+  M   G  P    Y  LI   
Sbjct: 313 RLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGY 372

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649
              G+   A  + D ++   +  D+  YN+++    + GR++       QM +  + P+ 
Sbjct: 373 CREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPN- 431

Query: 650 STCHFVFSGYVNCGFHNSAMEALQVLSMRML 680
               F +SG ++    N  +E+ + L  RML
Sbjct: 432 ---EFTYSGLIHGYLKNGDLESAEQLVQRML 459



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/232 (21%), Positives = 100/232 (43%), Gaps = 39/232 (16%)

Query: 480 MKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCG 539
           +K+LL+A  A  ++ ++ ++   +       TY+T++ +  + +E   A ++  +M+  G
Sbjct: 89  LKDLLRA-DAMALLWKVREFMVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERG 147

Query: 540 IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI------------K 587
              N  TYN++I         + A      M   G  P   TY ALI            K
Sbjct: 148 CGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAK 207

Query: 588 ILLD-----------------------YGDFDEALNLLDLVSLEGIPHDVLLYNTILKKA 624
            LLD                        G+ DEA  ++  +   G+  + + Y+ +++  
Sbjct: 208 ALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGL 267

Query: 625 CEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
           C+ G++D    +++QM ++  +PD  T + +  G+     H++  +A ++LS
Sbjct: 268 CKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFR---HHNKKDAFRLLS 316



 Score = 48.9 bits (115), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 35/161 (21%), Positives = 72/161 (44%)

Query: 513 NTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVR 572
           N +L  L+ A       ++ + M   GI P+  TY+ +I+    +R F +A  ++  M  
Sbjct: 86  NALLKDLLRADAMALLWKVREFMVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRE 145

Query: 573 DGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDV 632
            G    T+TY  LI  L   G  +EA      +   G+  D   Y  ++   C+  R + 
Sbjct: 146 RGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNE 205

Query: 633 IEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
            + ++++M   +++P+      +  G++  G  + A + ++
Sbjct: 206 AKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIK 246



 Score = 46.2 bits (108), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 127/648 (19%), Positives = 239/648 (36%), Gaps = 109/648 (16%)

Query: 52  SKATQMQIVDALCR-GERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETW 110
           +K T   +V  LC+ G+  RAS LL  +    H      +  I+    R  +        
Sbjct: 256 NKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHNKKDAFRLL 315

Query: 111 RMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNL-------------------------- 144
             ME   I  N   Y +M+  LC+ G  E+AS+L                          
Sbjct: 316 SEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCRE 375

Query: 145 --------IYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTY 196
                   I+    +  + P L  YNS +   +K+  +  +      M  R +  NE TY
Sbjct: 376 GNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTY 435

Query: 197 TELLKLAVWQKNLSA----VHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQH 252
           + L+   +   +L +    V  + +  +K   +    L +   S+ +  D++    T + 
Sbjct: 436 SGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLE---SYFKSDDIEKVSSTFKS 492

Query: 253 MVALAMM------GKLYINRTSEGRLRSS-RLDIPIPLN-ALPVMKVLRWSFSDVIHACG 304
           M+   +M      G L  N +S G + ++ R+   I  N ++P + V    +S +I    
Sbjct: 493 MLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSEIEKNGSVPDVHV----YSSLISGLC 548

Query: 305 RTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDS 364
           +T +   A  ++ +M   G+ P+   Y+  I  +     +     V   +    L P   
Sbjct: 549 KTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCV 608

Query: 365 TIATLSVECSKALELDLAEALLDQ-ISRCTNPKPF--SAFLAACDTMDKPERAIKIFAKM 421
           T  +L     K  ++  A  L ++ ++    P  F  S     C +    E+A+ +  +M
Sbjct: 609 TYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEM 668

Query: 422 RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMK 481
             +    I ++  L      V+   + G M       + +  + + M R  + ++ ++++
Sbjct: 669 FLRGHASISSFNNL------VDGFCKRGKM------QETLKLLHVIMGRGLVPNA-LTIE 715

Query: 482 NLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIP 541
           N++  L   G + E+   F +             L        +     +F  M   G  
Sbjct: 716 NIISGLSEAGKLSEVHTIFVE-------------LQQKTSESAARHFSSLFMDMINQGKI 762

Query: 542 PNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTM-----TYTALIKILLDYGDFD 596
           P     +++ D C      K  +   ++M+RD    ++      +Y A++  L   G   
Sbjct: 763 PLDVVDDMIRDHC------KEGNLDKALMLRDVIVAKSAPMGCSSYLAIVDNLCRKGKLS 816

Query: 597 EALNLLD-----------LVSLEGI----PHDVLLYNTILKKACEKGR 629
           EALNLL            LV+L GI     H  +L  ++ K A   G+
Sbjct: 817 EALNLLKEMDKRGNLQPTLVALLGIFWFRRHHHILNKSVTKMATRFGK 864


>gi|356574297|ref|XP_003555285.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Glycine max]
          Length = 794

 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 87/396 (21%), Positives = 162/396 (40%), Gaps = 62/396 (15%)

Query: 299 VIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNN 358
           ++   G+T     A  L+  +++ G +   + Y   I A  +++  R+ ++V   M++  
Sbjct: 150 IVSILGKTGRVSRAASLLHNLEADGFEVDVYGYTSLITAYANNKKYRDALKVFGKMKEVG 209

Query: 359 LKPQDSTI-ATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDKPER 413
            +P   T  A L+V     +      AL+ Q  +C    P    ++  ++ C      E 
Sbjct: 210 CEPTLITYNAILNVYGKMGMPWAKIIALV-QDMKCHGLAPDLCTYNTLISCCRAGSLYEE 268

Query: 414 AIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNN 472
           A+ +F +++    RPD  TY  L  ++G    P E   +  Q++S             N+
Sbjct: 269 ALDLFEEIKVAGFRPDAVTYNALLDVYGKSRRPKEAMEVLKQMES-------------NS 315

Query: 473 IQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAM 529
            + S ++  +L+ A    G++ +   L +   D        TY T+L   V A +   AM
Sbjct: 316 FRPSVVTYNSLVSAYVRGGLLEDALVLKRKMVDKGIKPDVYTYTTLLSGFVNAGKEELAM 375

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
           E+F++M+  G  PN  T+                                    ALIK+ 
Sbjct: 376 EVFEEMRKVGCKPNICTF-----------------------------------NALIKMY 400

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649
            D G F+E + +   + +     D++ +NT+L    + G    +  + E+M +++  P+ 
Sbjct: 401 GDRGKFEEMVKVFKEIKVCKCSPDIVTWNTLLAVFGQNGMDSEVSGVFEEMKRSRFAPER 460

Query: 650 STCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVS 685
            T + + S Y  CG  + AM A +    RML   VS
Sbjct: 461 DTFNTLISAYGRCGSFDQAMAAYK----RMLEAGVS 492



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 87/446 (19%), Positives = 174/446 (39%), Gaps = 66/446 (14%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ ++   G+++    A +++ QM+S   +PS  TY+  + A V    L + + + + M
Sbjct: 287 TYNALLDVYGKSRRPKEAMEVLKQMESNSFRPSVVTYNSLVSAYVRGGLLEDALVLKRKM 346

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDK 410
               +KP   T  TL      A + +LA  + +++ R    KP    F+A +       K
Sbjct: 347 VDKGIKPDVYTYTTLLSGFVNAGKEELAMEVFEEM-RKVGCKPNICTFNALIKMYGDRGK 405

Query: 411 PERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAK---------- 459
            E  +K+F +++  K  PDI T+  L ++FG      E   +F ++  ++          
Sbjct: 406 FEEMVKVFKEIKVCKCSPDIVTWNTLLAVFGQNGMDSEVSGVFEEMKRSRFAPERDTFNT 465

Query: 460 ------RINAIEMDMA------RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPL 507
                 R  + +  MA         +     +   +L  L   G+  +  +   + K   
Sbjct: 466 LISAYGRCGSFDQAMAAYKRMLEAGVSPDLSTYNAVLATLARGGLWEQSEKVLAEMKDGG 525

Query: 508 GTP---TYNTVLHSLVEAQESHR----AMEI----------------------------- 531
             P   TY+++LH+    +E  R    A EI                             
Sbjct: 526 CKPNEVTYSSLLHAYANGREVERMNALAEEIYSGTIKTHAVLLKTLVLVNSKVDLLVETE 585

Query: 532 --FKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
             F + +  GI P+  T N M+      +    A+ +++ M   G      +Y +L+ + 
Sbjct: 586 RAFLEFRKRGISPDVTTSNAMLSIYGRKKMVPKANEILNFMYESGLTLSLTSYNSLMYMY 645

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649
               +F ++  +   +  +GI  DV+ YN ++   C    +D  + IIE+M      PD 
Sbjct: 646 SRTENFHKSEQIFREILDKGIEPDVISYNIVIYAYCRNDMMDEAKRIIEEMKVPAPVPDV 705

Query: 650 STCHFVFSGYVNCGFHNSAMEALQVL 675
            T +   + Y        A++ ++ +
Sbjct: 706 VTYNTFIAAYAADSMFVEAIDVIRYM 731



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 104/511 (20%), Positives = 189/511 (36%), Gaps = 71/511 (13%)

Query: 93  ILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERY 152
           +L+   +S  P   ME  + ME      +   Y  ++ A  +GG LE+A  L   + ++ 
Sbjct: 291 LLDVYGKSRRPKEAMEVLKQMESNSFRPSVVTYNSLVSAYVRGGLLEDALVLKRKMVDK- 349

Query: 153 GIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAV 212
           GI P +  Y + L           A    + M       N  T+  L+K+          
Sbjct: 350 GIKPDVYTYTTLLSGFVNAGKEELAMEVFEEMRKVGCKPNICTFNALIKM---------- 399

Query: 213 HEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRL 272
              + D  K          + V  F  ++  K + + +     LA+ G+  ++    G  
Sbjct: 400 ---YGDRGK--------FEEMVKVFKEIKVCKCSPDIVTWNTLLAVFGQNGMDSEVSGVF 448

Query: 273 RSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYD 332
              +     P          R +F+ +I A GR  +   A     +M   G+ P   TY+
Sbjct: 449 EEMKRSRFAPE---------RDTFNTLISAYGRCGSFDQAMAAYKRMLEAGVSPDLSTYN 499

Query: 333 GFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRC 392
             +  +          +VL  M+    KP + T ++L    +   E++   AL ++I   
Sbjct: 500 AVLATLARGGLWEQSEKVLAEMKDGGCKPNEVTYSSLLHAYANGREVERMNALAEEIYSG 559

Query: 393 TNPKPFSAFL-------AACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGN---- 441
           T  K  +  L       +  D + + ERA   F K  + + PD+ T   + S++G     
Sbjct: 560 T-IKTHAVLLKTLVLVNSKVDLLVETERAFLEFRK--RGISPDVTTSNAMLSIYGRKKMV 616

Query: 442 ------VNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRE 495
                 +N  YE G   S               + N++ + +   +N  K+   E + RE
Sbjct: 617 PKANEILNFMYESGLTLSLT-------------SYNSLMYMYSRTENFHKS---EQIFRE 660

Query: 496 LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCS 555
           ++    D        +YN V+++         A  I ++MK     P+  TYN  I   +
Sbjct: 661 IL----DKGIEPDVISYNIVIYAYCRNDMMDEAKRIIEEMKVPAPVPDVVTYNTFIAAYA 716

Query: 556 IIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
               F  A  ++  M++ G  P   TY +++
Sbjct: 717 ADSMFVEAIDVIRYMIKQGCKPNHNTYNSIV 747


>gi|296085044|emb|CBI28459.3| unnamed protein product [Vitis vinifera]
          Length = 973

 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 94/426 (22%), Positives = 170/426 (39%), Gaps = 28/426 (6%)

Query: 236 SFTRLRDLKSAYETLQHMVALAMMGKLYI-NRTSEGRLRSSRLDIPIPLNALPVMKVL-- 292
            F R  D++ A+     MVA  +   L I N    G  ++ +++      AL +M+ +  
Sbjct: 320 GFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKME-----KALEIMQEMME 374

Query: 293 ------RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRN 346
                   ++S +I    R QN   A +L+ +M+   L P+  TY   I  +     L+ 
Sbjct: 375 KGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQG 434

Query: 347 GMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI-SRCTNPKPF---SAFL 402
              +L+ M  N LKP      TL    +K   ++ +  +L+++  +   P  F   S  +
Sbjct: 435 TNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLII 494

Query: 403 AACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRIN 462
             C      E    +   + ++LRP+  TY      +            F+++ S   + 
Sbjct: 495 GFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLP 554

Query: 463 AIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEA 522
            + +  A   +   H    N+ +A         + ++    +      TY+ ++H L   
Sbjct: 555 NVGIYTA---LIEGHCKEGNVTEAF-------SVFRFILSRRVLQDVQTYSVLIHGLSRN 604

Query: 523 QESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTY 582
            + H A  IF +++  G+ PNA TYN +I           AS L+  M   G  P  +TY
Sbjct: 605 GKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTY 664

Query: 583 TALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642
             LI  L   G+ + A NL D +   G+  + + Y  ++   C+         ++E+M  
Sbjct: 665 NILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLL 724

Query: 643 NKVQPD 648
             V PD
Sbjct: 725 RGVPPD 730



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 164/786 (20%), Positives = 320/786 (40%), Gaps = 118/786 (15%)

Query: 4   PLLRTRFQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKA------TQM 57
           P + T   +I+ + CK    K  +R +    E +R L   + L    + K       T  
Sbjct: 222 PDVYTYTNMIS-AHCKVGNVKDAKRVLLEMGEKARLLDEAIELKRSMVDKGLVPDLYTYD 280

Query: 58  QIVDALCRGERSRASHLLL----NLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMM 113
            +++  C  +RSR + L+L    ++G     +    +  +++   R  D   + + +R+ 
Sbjct: 281 ILINGFCMEKRSREAKLMLLEMIDVGLKPEPI---TYNALIDGFMRQGD---IEQAFRIK 334

Query: 114 EEK---EIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAK 170
           +E     I  N   +  ++  +CK G +E+A  ++  + E+ G+ P    Y+  +    +
Sbjct: 335 DEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEK-GVEPDSQTYSLLIEGHCR 393

Query: 171 LHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSL 230
             +M  A   LD M  R +    +TY+ ++       NL   + I              L
Sbjct: 394 GQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAI--------------L 439

Query: 231 RKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMK 290
           R+ V     L+     Y TL  M A A  G++  +R    R+R   +        LP + 
Sbjct: 440 REMV--MNGLKPNAVVYTTL--MTAHAKEGRVEESRMILERMREQGI--------LPDV- 486

Query: 291 VLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAI-------VSDR- 342
              + ++ +I    + +    A   +++M    L+P++HTY  FI          ++DR 
Sbjct: 487 ---FCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRY 543

Query: 343 -------GLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNP 395
                  G+   + +   + + + K  + T      E        L+  +L  +      
Sbjct: 544 FNEMLSCGVLPNVGIYTALIEGHCKEGNVT------EAFSVFRFILSRRVLQDV------ 591

Query: 396 KPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNM--F 452
           + +S  +       K   A  IF+++++K L P+  TY  L S         ++GN+   
Sbjct: 592 QTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLIS------GSCKQGNVDKA 645

Query: 453 SQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP-- 510
           SQ+     I  I  D+   NI         L+  L   G I      F D +    TP  
Sbjct: 646 SQLLEEMCIKGINPDIVTYNI---------LIDGLCKAGEIERAKNLFDDIEGRGLTPNC 696

Query: 511 -TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSM 569
            TY  ++    +++    A ++ ++M   G+PP+A  YN++++ C     F+ A  L   
Sbjct: 697 VTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQE 756

Query: 570 MVRDGFYPQTMTYTALIKILLDYGDFDEALNLL-DLVSLEGIPHDVLLYNTILKKACEKG 628
           M+  GF   T+++  LI+     G   EA +LL +++  + IP+ V  Y +++   C+ G
Sbjct: 757 MLEKGF-ASTVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHV-TYTSLIDHNCKAG 814

Query: 629 RIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLE 688
            +   + +  +M +  V P   T   +  GY N G     M  +  L   M+ + +    
Sbjct: 815 MMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIG----NMSEVSALFEEMVAKGIEP-- 868

Query: 689 EKRSDFEDLILAEDSEAESRILQFCEDSNENLAFTAAL-----LQLRWCTIV--GFPISW 741
           +K + +   ++ +    E  +++ C+  +E L     +     L L  C+++  GF I+ 
Sbjct: 869 DKMTYY---VMIDAYCREGNVMEACKLKDEILVKGMPMKSGFRLGLPTCSVIARGFQIAG 925

Query: 742 SLDRAS 747
           ++D A+
Sbjct: 926 NMDEAA 931


>gi|224056475|ref|XP_002298874.1| predicted protein [Populus trichocarpa]
 gi|222846132|gb|EEE83679.1| predicted protein [Populus trichocarpa]
          Length = 948

 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 85/374 (22%), Positives = 163/374 (43%), Gaps = 24/374 (6%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           ++++ +I+   + +  G A ++  +M  L L P+  TY+  I            + +L +
Sbjct: 81  FTYNTLINGLMKERKIGGATRVFNEMLMLNLSPNRVTYNILIDGHCDCGNFEQALRLLDV 140

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKP-- 411
           M+   L+P +     L    SK  + D+A++L+++I        + A+ A  D + K   
Sbjct: 141 MEAKGLRPDEVNYGALLSGLSKLAKFDIAKSLMERIRMSGMVVGYRAYTAMIDGLCKHGL 200

Query: 412 -ERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
            + ++++   M +    PDI T+ +L              N F +    K    +   M 
Sbjct: 201 LDESLQLLDMMFKDGASPDIITFSVLI-------------NGFCKAGKIKNAKEVICKMF 247

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQ-YFCDSKTPLGTPTY--NTVLHSLVEAQESH 526
           +  +  +++    L+     +G I E  + Y   ++T      +  N ++ SL  A    
Sbjct: 248 KAGLAPNYVIYATLIYNSCKKGDITEAFRNYATMTRTGHDVDYFICNVLISSLCRAGRVA 307

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
            A +  + M T  + PN+ T++ +I+   I+     A ++   M++ G  P   TY +L+
Sbjct: 308 EAEDFMRHMSTIDLAPNSITFDCIINGYGILGDALKAFSMFDEMIKLGHCPSHFTYGSLL 367

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPH--DVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
           K L   G+  EA  L  L  L  IP   D  +YNTIL + C++G++     +  +M Q  
Sbjct: 368 KGLCKGGNLREAKKL--LYKLHHIPAAVDTNIYNTILSETCKRGKLSDAVALFGEMVQFN 425

Query: 645 VQPDPSTCHFVFSG 658
           V PD  T   + +G
Sbjct: 426 VLPDSHTYAIILAG 439



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 117/558 (20%), Positives = 215/558 (38%), Gaps = 47/558 (8%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y  ++   CK G  + AS+LI  + E  GI   +  YN  +    K +      L L  M
Sbjct: 13  YNTILNWCCKKGRYKAASDLIDRM-ESKGIEADVCTYNMLIDDLCKNNRSAKGYLLLKKM 71

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK-HYSLSIFSLRKFVWSFTRLRDL 243
             RM+  NE TY  L+   + ++ +     ++ + +  + S +  +    +       + 
Sbjct: 72  RKRMIAPNEFTYNTLINGLMKERKIGGATRVFNEMLMLNLSPNRVTYNILIDGHCDCGNF 131

Query: 244 KSAYETLQHMVALAMM-GKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHA 302
           + A   L  M A  +   ++       G  + ++ DI     A  +M+ +R S   V + 
Sbjct: 132 EQALRLLDVMEAKGLRPDEVNYGALLSGLSKLAKFDI-----AKSLMERIRMSGMVVGYR 186

Query: 303 CGRTQNSGLAE--------QLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
                  GL +        QL+  M   G  P   T+   I        ++N  EV+  M
Sbjct: 187 AYTAMIDGLCKHGLLDESLQLLDMMFKDGASPDIITFSVLINGFCKAGKIKNAKEVICKM 246

Query: 355 QQNNLKPQDSTIATLSV-ECSKALELDLAEALLDQISRCTNPKPFSAFLAAC--DTMDKP 411
            +  L P     ATL    C K    D+ EA  +  +          F+      ++ + 
Sbjct: 247 FKAGLAPNYVIYATLIYNSCKKG---DITEAFRNYATMTRTGHDVDYFICNVLISSLCRA 303

Query: 412 ERAIKIFAKMRQ----KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMD 467
            R  +    MR      L P+  T++ + + +G +    +  +MF +             
Sbjct: 304 GRVAEAEDFMRHMSTIDLAPNSITFDCIINGYGILGDALKAFSMFDE------------- 350

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQE 524
           M +     SH +  +LLK L   G +RE   L+         + T  YNT+L    +  +
Sbjct: 351 MIKLGHCPSHFTYGSLLKGLCKGGNLREAKKLLYKLHHIPAAVDTNIYNTILSETCKRGK 410

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALV---SMMVRDGFYPQTMT 581
              A+ +F +M    + P++ TY I++    + R  K   AL+     + R    P  + 
Sbjct: 411 LSDAVALFGEMVQFNVLPDSHTYAIIL--AGLSRKGKMVPALLFFEKALARGTLSPNKVM 468

Query: 582 YTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMH 641
           YT+L   L   G  + A  + + +  +GI  D +  N +L      G+++ +E +  +M 
Sbjct: 469 YTSLFDGLFKVGQSNAASYIYEEMEHKGINPDTIAINAVLDGYSRMGKMEKVEKLFIKMQ 528

Query: 642 QNKVQPDPSTCHFVFSGY 659
              + P  +T + +  GY
Sbjct: 529 SGSLTPSLATYNILLHGY 546



 Score = 62.4 bits (150), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 80/167 (47%), Gaps = 3/167 (1%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TYN ++  L +   S +   + K+M+   I PN  TYN +I+     R    A+ + + M
Sbjct: 47  TYNMLIDDLCKNNRSAKGYLLLKKMRKRMIAPNEFTYNTLINGLMKERKIGGATRVFNEM 106

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           +     P  +TY  LI    D G+F++AL LLD++  +G+  D + Y  +L    +  + 
Sbjct: 107 LMLNLSPNRVTYNILIDGHCDCGNFEQALRLLDVMEAKGLRPDEVNYGALLSGLSKLAKF 166

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSM 677
           D+ + ++E++  + +         +  G    G  +   E+LQ+L M
Sbjct: 167 DIAKSLMERIRMSGMVVGYRAYTAMIDGLCKHGLLD---ESLQLLDM 210



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 127/625 (20%), Positives = 234/625 (37%), Gaps = 42/625 (6%)

Query: 55  TQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFH--ILNYCARSPDPLFVMETWRM 112
           T   ++D LC+  RS   +LLL        +  ++F +  ++N   +          +  
Sbjct: 47  TYNMLIDDLCKNNRSAKGYLLLK-KMRKRMIAPNEFTYNTLINGLMKERKIGGATRVFNE 105

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
           M    +  N   Y +++   C  G  E+A  L+  + E  G+ P    Y + L   +KL 
Sbjct: 106 MLMLNLSPNRVTYNILIDGHCDCGNFEQALRLLDVM-EAKGLRPDEVNYGALLSGLSKLA 164

Query: 173 SMVHANLCLDL--MDSRMVGKNEVT--YTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIF 228
               A   ++   M   +VG    T     L K  +  ++L  +  +++D     S  I 
Sbjct: 165 KFDIAKSLMERIRMSGMVVGYRAYTAMIDGLCKHGLLDESLQLLDMMFKD---GASPDII 221

Query: 229 SLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPV 288
           +    +  F +   +K+A E +  M   A +   Y+   +       + DI         
Sbjct: 222 TFSVLINGFCKAGKIKNAKEVICKMFK-AGLAPNYVIYATLIYNSCKKGDITEAFRNYAT 280

Query: 289 MK-----VLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRA--IVSD 341
           M      V  +  + +I +  R      AE  M  M ++ L P+S T+D  I    I+ D
Sbjct: 281 MTRTGHDVDYFICNVLISSLCRAGRVAEAEDFMRHMSTIDLAPNSITFDCIINGYGILGD 340

Query: 342 RGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALL---DQISRCTNPKPF 398
                   +   M +    P   T  +L     K   L  A+ LL     I    +   +
Sbjct: 341 A--LKAFSMFDEMIKLGHCPSHFTYGSLLKGLCKGGNLREAKKLLYKLHHIPAAVDTNIY 398

Query: 399 SAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDS 457
           +  L+      K   A+ +F +M Q  + PD  TY ++ +          +G M      
Sbjct: 399 NTILSETCKRGKLSDAVALFGEMVQFNVLPDSHTYAIILA------GLSRKGKMVPA--- 449

Query: 458 AKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLG----TPTYN 513
              +   E  +AR  +  + +   +L   L   G       Y  +     G    T   N
Sbjct: 450 ---LLFFEKALARGTLSPNKVMYTSLFDGLFKVGQ-SNAASYIYEEMEHKGINPDTIAIN 505

Query: 514 TVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRD 573
            VL       +  +  ++F +M++  + P+ ATYNI++   S  +     S   ++M R 
Sbjct: 506 AVLDGYSRMGKMEKVEKLFIKMQSGSLTPSLATYNILLHGYSKKKDLLKCSKFYNIMTRM 565

Query: 574 GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVI 633
           G  P  +T  ++I  L   G  D    +L  + +E    D L  N ++  +CE  ++   
Sbjct: 566 GISPDKLTCHSIILGLCKSGMLDVGFKMLKKMIMEDTLVDQLTLNMLITNSCETDKMGKA 625

Query: 634 EFIIEQMHQNKVQPDPSTCHFVFSG 658
             ++   +   + PD +T + +F+G
Sbjct: 626 FDLLNIKNLLGIIPDVNTYNAIFTG 650



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 108/580 (18%), Positives = 220/580 (37%), Gaps = 68/580 (11%)

Query: 123 KCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLD 182
           + Y  M+  LCK G L+E+  L+  +  + G  P +  ++  +    K   + +A   + 
Sbjct: 186 RAYTAMIDGLCKHGLLDESLQLLDMM-FKDGASPDIITFSVLINGFCKAGKIKNAKEVIC 244

Query: 183 LMDSRMVGKNEVTYTELLKLAVWQKNLSAV-----------HEI---------------- 215
            M    +  N V Y  L+  +  + +++             H++                
Sbjct: 245 KMFKAGLAPNYVIYATLIYNSCKKGDITEAFRNYATMTRTGHDVDYFICNVLISSLCRAG 304

Query: 216 ----WEDYIKHYSL-----SIFSLRKFVWSFTRLRDLKSAYETLQHMVALA------MMG 260
                ED+++H S      +  +    +  +  L D   A+     M+ L         G
Sbjct: 305 RVAEAEDFMRHMSTIDLAPNSITFDCIINGYGILGDALKAFSMFDEMIKLGHCPSHFTYG 364

Query: 261 KLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQ 320
            L       G LR ++  +   L+ +P         + +   C R + S  A  L  +M 
Sbjct: 365 SLLKGLCKGGNLREAK-KLLYKLHHIPAAVDTNIYNTILSETCKRGKLSD-AVALFGEMV 422

Query: 321 SLGLQPSSHTYDGFIRAIVSDRG--LRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALE 378
              + P SHTY   I A +S +G  +   +   K + +  L P      +L     K  +
Sbjct: 423 QFNVLPDSHTY-AIILAGLSRKGKMVPALLFFEKALARGTLSPNKVMYTSLFDGLFKVGQ 481

Query: 379 LDLAEALLDQIS-RCTNPKPFS--AFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYEL 434
            + A  + +++  +  NP   +  A L     M K E+  K+F KM+   L P + TY +
Sbjct: 482 SNAASYIYEEMEHKGINPDTIAINAVLDGYSRMGKMEKVEKLFIKMQSGSLTPSLATYNI 541

Query: 435 LFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIR 494
           L              + +S+     + +     M R  I    ++  +++  L   GM+ 
Sbjct: 542 LL-------------HGYSKKKDLLKCSKFYNIMTRMGISPDKLTCHSIILGLCKSGMLD 588

Query: 495 ---ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI 551
              ++++      T +   T N ++ +  E  +  +A ++       GI P+  TYN + 
Sbjct: 589 VGFKMLKKMIMEDTLVDQLTLNMLITNSCETDKMGKAFDLLNIKNLLGIIPDVNTYNAIF 648

Query: 552 DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIP 611
              +     + +  L+  M+  G  P +  Y +LI  +   GD   A  L D +   G+ 
Sbjct: 649 TGLNRASALRESHLLLHDMLERGITPTSTQYISLINGMCRMGDIQGAFRLKDEMEAIGVS 708

Query: 612 HDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
              +  + +++   + G+++    +++ M Q ++ P  +T
Sbjct: 709 SWDVAESAMVRGLAQCGKVEEAMLVLDCMLQKRLIPTVAT 748



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 76/388 (19%), Positives = 150/388 (38%), Gaps = 57/388 (14%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ +++ C +      A  L+ +M+S G++    TY+  I  +  +     G  +LK M
Sbjct: 12  TYNTILNWCCKKGRYKAASDLIDRMESKGIEADVCTYNMLIDDLCKNNRSAKGYLLLKKM 71

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQ---ISRCTNPKPFSAFLAA-CDTMDK 410
           ++  + P + T  TL     K  ++  A  + ++   ++   N   ++  +   CD    
Sbjct: 72  RKRMIAPNEFTYNTLINGLMKERKIGGATRVFNEMLMLNLSPNRVTYNILIDGHCDC-GN 130

Query: 411 PERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
            E+A+++   M  K LRPD   Y  L S    +                      + D+A
Sbjct: 131 FEQALRLLDVMEAKGLRPDEVNYGALLSGLSKL---------------------AKFDIA 169

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAM 529
                      K+L++ +   GM+             +G   Y  ++  L +      ++
Sbjct: 170 -----------KSLMERIRMSGMV-------------VGYRAYTAMIDGLCKHGLLDESL 205

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
           ++   M   G  P+  T++++I+        K+A  ++  M + G  P  + Y  LI   
Sbjct: 206 QLLDMMFKDGASPDIITFSVLINGFCKAGKIKNAKEVICKMFKAGLAPNYVIYATLIYNS 265

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649
              GD  EA      ++  G   D  + N ++   C  GR+   E  +  M    + P+ 
Sbjct: 266 CKKGDITEAFRNYATMTRTGHDVDYFICNVLISSLCRAGRVAEAEDFMRHMSTIDLAPNS 325

Query: 650 STCHFVFSGYVNCGFHNSAMEALQVLSM 677
            T   + +GY   G      +AL+  SM
Sbjct: 326 ITFDCIINGYGILG------DALKAFSM 347



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 72/356 (20%), Positives = 141/356 (39%), Gaps = 73/356 (20%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
            E+L ++MQS  L PS  TY+  +      + L    +   IM +  + P   T  ++ +
Sbjct: 520 VEKLFIKMQSGSLTPSLATYNILLHGYSKKKDLLKCSKFYNIMTRMGISPDKLTCHSIIL 579

Query: 372 ECSKALELDLA----------EALLDQISR---CTNPKPFSAFLAACDTMDKPERAIKIF 418
              K+  LD+           + L+DQ++     TN         +C+T DK  +A  + 
Sbjct: 580 GLCKSGMLDVGFKMLKKMIMEDTLVDQLTLNMLITN---------SCET-DKMGKAFDLL 629

Query: 419 -AKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSH 477
             K    + PD+ TY  +F+     +A                            ++ SH
Sbjct: 630 NIKNLLGIIPDVNTYNAIFTGLNRASA----------------------------LRESH 661

Query: 478 ISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKT 537
           + + ++L+     G+            TP  T  Y ++++ +    +   A  +  +M+ 
Sbjct: 662 LLLHDMLE----RGI------------TPTST-QYISLINGMCRMGDIQGAFRLKDEMEA 704

Query: 538 CGIPPNAATYNIMIDCCSIIRCFKSASALVSM--MVRDGFYPQTMTYTALIKILLDYGDF 595
            G+       + M+    + +C K   A++ +  M++    P   T+T L+ +L      
Sbjct: 705 IGVSSWDVAESAMVR--GLAQCGKVEEAMLVLDCMLQKRLIPTVATFTTLMHMLCKKAKL 762

Query: 596 DEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
            EAL L   ++L G+  DV+ YN ++   C  G       + E+M +  + P+ +T
Sbjct: 763 SEALKLRGKMALYGVKLDVVAYNVLISGLCADGDALAAFNLYEEMKERGLWPNTTT 818



 Score = 47.4 bits (111), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 35/146 (23%), Positives = 61/146 (41%)

Query: 535 MKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGD 594
           M+  G  P   TYN +++ C     +K+AS L+  M   G      TY  LI  L     
Sbjct: 1   MEGSGYVPTIVTYNTILNWCCKKGRYKAASDLIDRMESKGIEADVCTYNMLIDDLCKNNR 60

Query: 595 FDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHF 654
             +   LL  +    I  +   YNT++    ++ +I     +  +M    + P+  T + 
Sbjct: 61  SAKGYLLLKKMRKRMIAPNEFTYNTLINGLMKERKIGGATRVFNEMLMLNLSPNRVTYNI 120

Query: 655 VFSGYVNCGFHNSAMEALQVLSMRML 680
           +  G+ +CG    A+  L V+  + L
Sbjct: 121 LIDGHCDCGNFEQALRLLDVMEAKGL 146


>gi|449446855|ref|XP_004141186.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g55840-like [Cucumis sativus]
          Length = 1079

 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 82/376 (21%), Positives = 168/376 (44%), Gaps = 20/376 (5%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           S++ +I+   +    G+A ++  +M  L L P+  TY+  I     +      + VL +M
Sbjct: 282 SYNTLINGFVKEGKIGVATRVFNEMIELNLSPNLITYNILINGYCINGNFEEALRVLDVM 341

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQ--ISRCT-NPKPFSAFLAACDTMDKP 411
           + N+++P + TI TL     K+ + D+A  +L++  I+R + N    +  +         
Sbjct: 342 EANDVRPNEVTIGTLLNGLYKSAKFDVARNILERYCINRTSLNCISHTVMIDGLCRNGLL 401

Query: 412 ERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           + A ++  +M +  + PDI T+ +L              N F +V +  +   +   + R
Sbjct: 402 DEAFQLLIEMCKDGVHPDIITFSVLI-------------NGFCKVGNINKAKEVMSKIYR 448

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCD---SKTPLGTPTYNTVLHSLVEAQESHR 527
                +++    L+      G + E ++++     +       T N+++ SL E  +   
Sbjct: 449 EGFVPNNVIFSTLIYNSCKVGNVYEAMKFYAAMNLNGQNADNFTCNSLVASLCENGKLVE 508

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A E    +   G+ PN+ T++ +I+  + +     A ++   M+  G +P   TY +L+K
Sbjct: 509 AEEFLHHISRIGLVPNSVTFDCIINGYANVGDGSGAFSVFDRMISCGHHPSPFTYGSLLK 568

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
           +L    +F EA  LL  +    +  D + YNT++ +  + G +     + E+M QN + P
Sbjct: 569 VLCKGQNFWEARKLLKKLHCIPLAVDTISYNTLIVEISKSGNLLEAVRLFEEMIQNNILP 628

Query: 648 DPSTCHFVFSGYVNCG 663
           D  T   + SG +  G
Sbjct: 629 DSYTYTCILSGLIREG 644



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 75/373 (20%), Positives = 158/373 (42%), Gaps = 49/373 (13%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           S++ ++  C +      A  L+  M+  G+Q    TY+ FI ++  +     G  VLK M
Sbjct: 212 SYNTLLSWCCKKGRFKFALVLIHHMECKGIQADVCTYNMFIDSLCRNSRSAQGYLVLKKM 271

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERA 414
           +   + P + +  TL                             + F+       K   A
Sbjct: 272 RNKMITPNEVSYNTL----------------------------INGFVKE----GKIGVA 299

Query: 415 IKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNI 473
            ++F +M +  L P++ TY +L + +  +N  +EE         A R+  +   M  N++
Sbjct: 300 TRVFNEMIELNLSPNLITYNILINGYC-INGNFEE---------ALRVLDV---MEANDV 346

Query: 474 QHSHISMKNLLKALGAEG---MIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAME 530
           + + +++  LL  L       + R +++ +C ++T L   ++  ++  L        A +
Sbjct: 347 RPNEVTIGTLLNGLYKSAKFDVARNILERYCINRTSLNCISHTVMIDGLCRNGLLDEAFQ 406

Query: 531 IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590
           +  +M   G+ P+  T++++I+    +     A  ++S + R+GF P  + ++ LI    
Sbjct: 407 LLIEMCKDGVHPDIITFSVLINGFCKVGNINKAKEVMSKIYREGFVPNNVIFSTLIYNSC 466

Query: 591 DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650
             G+  EA+     ++L G   D    N+++   CE G++   E  +  + +  + P+  
Sbjct: 467 KVGNVYEAMKFYAAMNLNGQNADNFTCNSLVASLCENGKLVEAEEFLHHISRIGLVPNSV 526

Query: 651 TCHFVFSGYVNCG 663
           T   + +GY N G
Sbjct: 527 TFDCIINGYANVG 539



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 86/184 (46%), Gaps = 3/184 (1%)

Query: 483 LLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCG 539
           L++    +GM+   +  F         P   T N ++ S+V+   +H     FKQM T  
Sbjct: 111 LIRVYLRQGMVGHAVNTFSSMLIRGFKPSVYTCNMIMASMVKNCRAHLVWSFFKQMLTSR 170

Query: 540 IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEAL 599
           + PN +++NI+I    +    K A  +++MM R+G+ P  ++Y  L+      G F  AL
Sbjct: 171 VCPNVSSFNILISVLCVQGKLKKAVNILTMMERNGYVPTIVSYNTLLSWCCKKGRFKFAL 230

Query: 600 NLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
            L+  +  +GI  DV  YN  +   C   R      ++++M    + P+  + + + +G+
Sbjct: 231 VLIHHMECKGIQADVCTYNMFIDSLCRNSRSAQGYLVLKKMRNKMITPNEVSYNTLINGF 290

Query: 660 VNCG 663
           V  G
Sbjct: 291 VKEG 294



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 139/698 (19%), Positives = 256/698 (36%), Gaps = 163/698 (23%)

Query: 105 FVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSF 164
            V   ++ M    +  N   + +++  LC  G L++A N++  + ER G  P +  YN+ 
Sbjct: 158 LVWSFFKQMLTSRVCPNVSSFNILISVLCVQGKLKKAVNILTMM-ERNGYVPTIVSYNTL 216

Query: 165 LGACAK----------LHSM----VHANLC---------------------LDLMDSRMV 189
           L  C K          +H M    + A++C                     L  M ++M+
Sbjct: 217 LSWCCKKGRFKFALVLIHHMECKGIQADVCTYNMFIDSLCRNSRSAQGYLVLKKMRNKMI 276

Query: 190 GKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK-HYSLSIFSLRKFVWSFT---------R 239
             NEV+Y  L+   V +  +     ++ + I+ + S ++ +    +  +          R
Sbjct: 277 TPNEVSYNTLINGFVKEGKIGVATRVFNEMIELNLSPNLITYNILINGYCINGNFEEALR 336

Query: 240 LRDLKSA-----------------YETLQHMVALAMMGKLYINRTS----------EGRL 272
           + D+  A                 Y++ +  VA  ++ +  INRTS          +G  
Sbjct: 337 VLDVMEANDVRPNEVTIGTLLNGLYKSAKFDVARNILERYCINRTSLNCISHTVMIDGLC 396

Query: 273 RSSRLDIPIPLNALPVMKVLR-------WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQ 325
           R+  LD    L    ++++ +        +FS +I+   +  N   A+++M ++   G  
Sbjct: 397 RNGLLDEAFQL----LIEMCKDGVHPDIITFSVLINGFCKVGNINKAKEVMSKIYREGFV 452

Query: 326 PSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEAL 385
           P++  +   I        +   M+    M  N     + T  +L     +  +L  AE  
Sbjct: 453 PNNVIFSTLIYNSCKVGNVYEAMKFYAAMNLNGQNADNFTCNSLVASLCENGKLVEAEEF 512

Query: 386 LDQISR---CTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGN 441
           L  ISR     N   F   +     +     A  +F +M      P   TY  L  +   
Sbjct: 513 LHHISRIGLVPNSVTFDCIINGYANVGDGSGAFSVFDRMISCGHHPSPFTYGSLLKVLCK 572

Query: 442 VNAPYEEGNMFSQ-----------------VDSAKRINAIEM-----DMARNNIQHSHIS 479
               +E   +  +                 V+ +K  N +E      +M +NNI     +
Sbjct: 573 GQNFWEARKLLKKLHCIPLAVDTISYNTLIVEISKSGNLLEAVRLFEEMIQNNILPDSYT 632

Query: 480 MKNLLKALGAEG-------MIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIF 532
              +L  L  EG        +  L+Q        L +  Y   +  L +A +S  A+ +F
Sbjct: 633 YTCILSGLIREGRLVCAFIFLGRLMQ---KEILTLNSIVYTCFIDGLFKAGQSKAALYLF 689

Query: 533 KQMKTCGIP-----------------------------------PNAATYNIMIDCCS-- 555
           K+M+  G+                                    PN  T+NI++   S  
Sbjct: 690 KEMEEKGLSLDLIALNSITDGYSRMGKVFSASSLISKTRNKNVIPNLTTFNILLHGYSRG 749

Query: 556 --IIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHD 613
             I+ CFK    L ++M R GF+P  +TY +LI  L ++G  +  + +L +   E    D
Sbjct: 750 QDIMSCFK----LYNLMRRSGFFPNRLTYHSLILGLCNHGMLELGIKMLKMFIAESSTID 805

Query: 614 VLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
            L +N +++K CE   +D +  +   M   +V  D  T
Sbjct: 806 DLTFNMLIRKCCEINDLDKVIDLTHNMEVFRVSLDKDT 843



 Score = 63.2 bits (152), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 76/162 (46%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           +YNT+++  V+  +   A  +F +M    + PN  TYNI+I+   I   F+ A  ++ +M
Sbjct: 282 SYNTLINGFVKEGKIGVATRVFNEMIELNLSPNLITYNILINGYCINGNFEEALRVLDVM 341

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
             +   P  +T   L+  L     FD A N+L+   +     + + +  ++   C  G +
Sbjct: 342 EANDVRPNEVTIGTLLNGLYKSAKFDVARNILERYCINRTSLNCISHTVMIDGLCRNGLL 401

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEAL 672
           D    ++ +M ++ V PD  T   + +G+   G  N A E +
Sbjct: 402 DEAFQLLIEMCKDGVHPDIITFSVLINGFCKVGNINKAKEVM 443



 Score = 60.1 bits (144), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 71/346 (20%), Positives = 144/346 (41%), Gaps = 26/346 (7%)

Query: 318 QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKAL 377
           QM +  + P+  +++  I  +     L+  + +L +M++N   P   +  TL   C K  
Sbjct: 165 QMLTSRVCPNVSSFNILISVLCVQGKLKKAVNILTMMERNGYVPTIVSYNTLLSWCCKKG 224

Query: 378 ELDLAEALLD-------QISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKL-RPDI 429
               A  L+        Q   CT    ++ F+ +     +  +   +  KMR K+  P+ 
Sbjct: 225 RFKFALVLIHHMECKGIQADVCT----YNMFIDSLCRNSRSAQGYLVLKKMRNKMITPNE 280

Query: 430 RTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI--NAIEMDMARNNIQHSHISMKNLLKAL 487
            +Y  L      +N   +EG    ++  A R+    IE++++ N I + +I +       
Sbjct: 281 VSYNTL------INGFVKEG----KIGVATRVFNEMIELNLSPNLITY-NILINGYCING 329

Query: 488 GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATY 547
             E  +R L     +   P    T  T+L+ L ++ +   A  I ++        N  ++
Sbjct: 330 NFEEALRVLDVMEANDVRP-NEVTIGTLLNGLYKSAKFDVARNILERYCINRTSLNCISH 388

Query: 548 NIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSL 607
            +MID          A  L+  M +DG +P  +T++ LI      G+ ++A  ++  +  
Sbjct: 389 TVMIDGLCRNGLLDEAFQLLIEMCKDGVHPDIITFSVLINGFCKVGNINKAKEVMSKIYR 448

Query: 608 EGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCH 653
           EG   + ++++T++  +C+ G +         M+ N    D  TC+
Sbjct: 449 EGFVPNNVIFSTLIYNSCKVGNVYEAMKFYAAMNLNGQNADNFTCN 494



 Score = 53.1 bits (126), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 103/579 (17%), Positives = 225/579 (38%), Gaps = 60/579 (10%)

Query: 120 LNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANL 179
           LN   + +M+  LC+ G L+EA  L+  + +  G++P +  ++  +    K+ ++  A  
Sbjct: 383 LNCISHTVMIDGLCRNGLLDEAFQLLIEMCKD-GVHPDIITFSVLINGFCKVGNINKAKE 441

Query: 180 CLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSI-------FSLRK 232
            +  +       N V ++ L+       N   V  ++E    + ++++       F+   
Sbjct: 442 VMSKIYREGFVPNNVIFSTLIY------NSCKVGNVYEAMKFYAAMNLNGQNADNFTCNS 495

Query: 233 FVWSFTRLRDLKSAYETLQHMVALAMMGK-----LYIN---RTSEGRLRSSRLDIPIPLN 284
            V S      L  A E L H+  + ++         IN      +G    S  D  I   
Sbjct: 496 LVASLCENGKLVEAEEFLHHISRIGLVPNSVTFDCIINGYANVGDGSGAFSVFDRMISCG 555

Query: 285 ALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGL 344
             P      +++  ++    + QN   A +L+ ++  + L   + +Y+  I  I     L
Sbjct: 556 HHPS----PFTYGSLLKVLCKGQNFWEARKLLKKLHCIPLAVDTISYNTLIVEISKSGNL 611

Query: 345 RNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR----CTNPKPFSA 400
              + + + M QNN+ P   T   +     +   L  A   L ++ +      N   ++ 
Sbjct: 612 LEAVRLFEEMIQNNILPDSYTYTCILSGLIREGRLVCAFIFLGRLMQKEILTLNSIVYTC 671

Query: 401 FLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAK 459
           F+       + + A+ +F +M +K L  D+     +   +  +   +   ++ S+  +  
Sbjct: 672 FIDGLFKAGQSKAALYLFKEMEEKGLSLDLIALNSITDGYSRMGKVFSASSLISKTRNKN 731

Query: 460 RI-NAIEMD---------------------MARNNIQHSHISMKNLLKALGAEGMIR--- 494
            I N    +                     M R+    + ++  +L+  L   GM+    
Sbjct: 732 VIPNLTTFNILLHGYSRGQDIMSCFKLYNLMRRSGFFPNRLTYHSLILGLCNHGMLELGI 791

Query: 495 ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCC 554
           ++++ F    + +   T+N ++    E  +  + +++   M+   +  +  T   + D  
Sbjct: 792 KMLKMFIAESSTIDDLTFNMLIRKCCEINDLDKVIDLTHNMEVFRVSLDKDTQKAVTDV- 850

Query: 555 SIIRCFKSASALVSM--MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPH 612
            ++R   S +  V M  M++ GF P +  Y  ++K +   GD   A  L D +   GI  
Sbjct: 851 -LVRRMVSQNYFVFMHEMLKKGFIPTSKQYCTMMKRMCRVGDIQGAFKLKDQMVALGISL 909

Query: 613 DVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
           D      +++     G+I+   +I+++M + K  P  ST
Sbjct: 910 DDAAECAMVRGLALCGKIEEAMWILQRMLRMKKIPTTST 948



 Score = 45.8 bits (107), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 32/140 (22%), Positives = 62/140 (44%)

Query: 512  YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
            Y T++  +    +   A ++  QM   GI  + A    M+   ++    + A  ++  M+
Sbjct: 879  YCTMMKRMCRVGDIQGAFKLKDQMVALGISLDDAAECAMVRGLALCGKIEEAMWILQRML 938

Query: 572  RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
            R    P T T+T L+ +     +F EA NL  L+    +  D++ YN ++   C  G + 
Sbjct: 939  RMKKIPTTSTFTTLMHVFCKKDNFKEAHNLKILMEHYRVKLDIVAYNVLISACCANGDVI 998

Query: 632  VIEFIIEQMHQNKVQPDPST 651
                  E++ Q  + P+ +T
Sbjct: 999  TALDFYEEIKQKGLLPNMTT 1018


>gi|18397002|ref|NP_566237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207286|sp|Q9SR00.1|PP213_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g04760, chloroplastic; Flags: Precursor
 gi|6175176|gb|AAF04902.1|AC011437_17 hypothetical protein [Arabidopsis thaliana]
 gi|15810359|gb|AAL07067.1| unknown protein [Arabidopsis thaliana]
 gi|22136960|gb|AAM91709.1| unknown protein [Arabidopsis thaliana]
 gi|332640611|gb|AEE74132.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 602

 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 113/465 (24%), Positives = 194/465 (41%), Gaps = 33/465 (7%)

Query: 221 KHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIP 280
           K Y+  +    K +  F  LR++  A   ++ +           N    G  + +R+D  
Sbjct: 118 KGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFGQPDVFAYNALINGFCKMNRIDDA 177

Query: 281 IPLNALPVMKVLRWSFSDVIHA------CGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGF 334
                L  M+   +S   V +       C R +   LA +++ Q+ S   QP+  TY   
Sbjct: 178 T--RVLDRMRSKDFSPDTVTYNIMIGSLCSRGK-LDLALKVLNQLLSDNCQPTVITYTIL 234

Query: 335 IRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQIS-RCT 393
           I A + + G+   ++++  M    LKP   T  T+     K   +D A  ++  +  +  
Sbjct: 235 IEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGC 294

Query: 394 NPK--PFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGN 450
            P    ++  L A     K E   K+  KM  +K  P++ TY +L +     +   EE  
Sbjct: 295 EPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCR-DGKIEEA- 352

Query: 451 MFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYF----CDSKTP 506
                     +N +++ M    +     S   L+ A   EG +   I++      D   P
Sbjct: 353 ----------MNLLKL-MKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLP 401

Query: 507 LGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASAL 566
                YNTVL +L +  ++ +A+EIF ++   G  PN+++YN M            A  +
Sbjct: 402 -DIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHM 460

Query: 567 VSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL-DLVSLEGIPHDVLLYNTILKKAC 625
           +  M+ +G  P  +TY ++I  L   G  DEA  LL D+ S E  P  V+ YN +L   C
Sbjct: 461 ILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHP-SVVTYNIVLLGFC 519

Query: 626 EKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAME 670
           +  RI+    ++E M  N  +P+ +T   +  G    G+   AME
Sbjct: 520 KAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAME 564



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 115/268 (42%), Gaps = 20/268 (7%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
            E+LM +M S    P+  TY   I  +  D  +   M +LK+M++  L P   +   L  
Sbjct: 317 GEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIA 376

Query: 372 ECSKALELDLA-EALLDQISRCTNPK--PFSAFLAACDTMDKPERAIKIFAKMRQ-KLRP 427
              +   LD+A E L   IS    P    ++  LA      K ++A++IF K+ +    P
Sbjct: 377 AFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSP 436

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL 487
           +  +Y  +FS             ++S  D  + ++ I ++M  N I    I+  +++  L
Sbjct: 437 NSSSYNTMFSA------------LWSSGDKIRALHMI-LEMMSNGIDPDEITYNSMISCL 483

Query: 488 GAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNA 544
             EGM+ E  +   D ++    P   TYN VL    +A     A+ + + M   G  PN 
Sbjct: 484 CREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNE 543

Query: 545 ATYNIMIDCCSIIRCFKSASALVSMMVR 572
            TY ++I+          A  L + +VR
Sbjct: 544 TTYTVLIEGIGFAGYRAEAMELANDLVR 571



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 78/374 (20%), Positives = 156/374 (41%), Gaps = 25/374 (6%)

Query: 299 VIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNN 358
           + H   R+ N   +  L+  M   G  P        I+   + R +   + V++I+++  
Sbjct: 95  IFHRSCRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFG 154

Query: 359 LKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDKPERA 414
            +P       L     K   +D A  +LD++ R  +  P    ++  + +  +  K + A
Sbjct: 155 -QPDVFAYNALINGFCKMNRIDDATRVLDRM-RSKDFSPDTVTYNIMIGSLCSRGKLDLA 212

Query: 415 IKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMD-MARNN 472
           +K+  ++     +P + TY +L      + A   EG     VD A ++    MD M    
Sbjct: 213 LKVLNQLLSDNCQPTVITYTIL------IEATMLEGG----VDEALKL----MDEMLSRG 258

Query: 473 IQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAM 529
           ++    +   +++ +  EGM+    +   + +     P   +YN +L +L+   +     
Sbjct: 259 LKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGE 318

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
           ++  +M +    PN  TY+I+I         + A  L+ +M   G  P   +Y  LI   
Sbjct: 319 KLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAF 378

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649
              G  D A+  L+ +  +G   D++ YNT+L   C+ G+ D    I  ++ +    P+ 
Sbjct: 379 CREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNS 438

Query: 650 STCHFVFSGYVNCG 663
           S+ + +FS   + G
Sbjct: 439 SSYNTMFSALWSSG 452



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 78/172 (45%)

Query: 509 TPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVS 568
           T TYN ++ SL    +   A+++  Q+ +    P   TY I+I+   +      A  L+ 
Sbjct: 193 TVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMD 252

Query: 569 MMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
            M+  G  P   TY  +I+ +   G  D A  ++  + L+G   DV+ YN +L+    +G
Sbjct: 253 EMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQG 312

Query: 629 RIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRML 680
           + +  E ++ +M   K  P+  T   + +     G    AM  L+++  + L
Sbjct: 313 KWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGL 364



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/274 (19%), Positives = 122/274 (44%), Gaps = 20/274 (7%)

Query: 407 TMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM 466
           T+    +A+++   + +  +PD+  Y  L + F  +N          ++D A R+    +
Sbjct: 136 TLRNIPKAVRVMEILEKFGQPDVFAYNALINGFCKMN----------RIDDATRV----L 181

Query: 467 DMARN-NIQHSHISMKNLLKALGAEG----MIRELIQYFCDSKTPLGTPTYNTVLHSLVE 521
           D  R+ +     ++   ++ +L + G     ++ L Q   D+  P    TY  ++ + + 
Sbjct: 182 DRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPT-VITYTILIEATML 240

Query: 522 AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMT 581
                 A+++  +M + G+ P+  TYN +I           A  +V  +   G  P  ++
Sbjct: 241 EGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVIS 300

Query: 582 YTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMH 641
           Y  L++ LL+ G ++E   L+  +  E    +V+ Y+ ++   C  G+I+    +++ M 
Sbjct: 301 YNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMK 360

Query: 642 QNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
           +  + PD  +   + + +   G  + A+E L+ +
Sbjct: 361 EKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETM 394



 Score = 50.1 bits (118), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 71/153 (46%), Gaps = 6/153 (3%)

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDC-CSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
           R MEI ++       P+   YN +I+  C + R   +   L  M  +D F P T+TY  +
Sbjct: 145 RVMEILEKFGQ----PDVFAYNALINGFCKMNRIDDATRVLDRMRSKD-FSPDTVTYNIM 199

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           I  L   G  D AL +L+ +  +     V+ Y  +++    +G +D    ++++M    +
Sbjct: 200 IGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGL 259

Query: 646 QPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678
           +PD  T + +  G    G  + A E ++ L ++
Sbjct: 260 KPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELK 292



 Score = 41.6 bits (96), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 42/195 (21%), Positives = 82/195 (42%), Gaps = 2/195 (1%)

Query: 59  IVDALCR-GERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKE 117
           ++  LC+ G+  +A  +   LG    S  +  +  + +    S D +  +     M    
Sbjct: 409 VLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNG 468

Query: 118 IGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHA 177
           I  +   Y  M+  LC+ G ++EA  L+  +      +P +  YN  L    K H +  A
Sbjct: 469 IDPDEITYNSMISCLCREGMVDEAFELLVDM-RSCEFHPSVVTYNIVLLGFCKAHRIEDA 527

Query: 178 NLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSF 237
              L+ M       NE TYT L++   +    +   E+  D ++  ++S +S ++   +F
Sbjct: 528 INVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDLVRIDAISEYSFKRLHRTF 587

Query: 238 TRLRDLKSAYETLQH 252
             L  L+ + +T  +
Sbjct: 588 PLLNVLQRSSQTFGY 602


>gi|297836911|ref|XP_002886337.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
 gi|297332178|gb|EFH62596.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
          Length = 1059

 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 90/390 (23%), Positives = 164/390 (42%), Gaps = 33/390 (8%)

Query: 273  RSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGL-------AEQLMLQMQSLGLQ 325
            R SR  + + L    + K+++  F   I   G   N          A  L+  M  LGL+
Sbjct: 662  RCSRFSLALAL----LGKMMKLGFQPSIVTLGSLLNGFCQGNRFQEAVSLVDSMAELGLE 717

Query: 326  PSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL-SVECSKALELDLAEA 384
            P+   Y+  I  +  +R L N +E+   M++  +     T  TL S  C+     D A  
Sbjct: 718  PNVVIYNTVINGLCKNRDLNNALEIFYGMEKKGIVADAVTYNTLISGLCNSGRWTDAARL 777

Query: 385  LLDQISRCTNPKPFSAFLAACDTMDKPE---RAIKIFAKM-RQKLRPDIRTYELLFSLFG 440
            L D + R  +P     F A  DT  K      A  ++ +M R+ + P+I TY  L + F 
Sbjct: 778  LRDMVKRKIDPNVI-FFTALIDTFVKEGNLLEAKNLYKEMIRRSVHPNILTYNSLINGFC 836

Query: 441  NVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYF 500
                  +  +MF  + S      +             ++   L+        + + ++ F
Sbjct: 837  IQGRLGDAKHMFDLMVSKGCFPDV-------------VTYNTLITGFCKSKRVEDGMKLF 883

Query: 501  CD--SKTPLGTP-TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSII 557
            C+   +  +G   TYNT++H   +A + + A ++F +M  CG+PP+  TYNI++DC    
Sbjct: 884  CEMTHQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVPPDIVTYNILLDCLCNN 943

Query: 558  RCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLY 617
               + A  +V  + ++      +TY  +I+ +       EA  L   ++ +G+  D + Y
Sbjct: 944  GKIEKALVMVEDLQKNQMDVDIITYNIIIQGMCRNDKVKEAWCLFRSLTRKGVKLDAIAY 1003

Query: 618  NTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
             T++   C  G     + +  +M ++   P
Sbjct: 1004 ITMISGLCRNGLRREADKLCTRMKEDGFMP 1033



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 69/277 (24%), Positives = 124/277 (44%), Gaps = 25/277 (9%)

Query: 393 TNPKP----FSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYE 447
           + P P    F+  L A   M+K +  I +F KM    +  D+ ++ +L            
Sbjct: 609 SRPIPSIVDFTRVLTAIAKMNKFDIVIYLFHKMENLGISHDLYSFTILI----------- 657

Query: 448 EGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPL 507
             + F +        A+   M +   Q S +++ +LL         +E +    DS   L
Sbjct: 658 --HCFCRCSRFSLALALLGKMMKLGFQPSIVTLGSLLNGFCQGNRFQEAVS-LVDSMAEL 714

Query: 508 G----TPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID-CCSIIRCFKS 562
           G       YNTV++ L + ++ + A+EIF  M+  GI  +A TYN +I   C+  R +  
Sbjct: 715 GLEPNVVIYNTVINGLCKNRDLNNALEIFYGMEKKGIVADAVTYNTLISGLCNSGR-WTD 773

Query: 563 ASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILK 622
           A+ L+  MV+    P  + +TALI   +  G+  EA NL   +    +  ++L YN+++ 
Sbjct: 774 AARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEAKNLYKEMIRRSVHPNILTYNSLIN 833

Query: 623 KACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
             C +GR+   + + + M      PD  T + + +G+
Sbjct: 834 GFCIQGRLGDAKHMFDLMVSKGCFPDVVTYNTLITGF 870



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 84/358 (23%), Positives = 140/358 (39%), Gaps = 29/358 (8%)

Query: 325 QPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNL--KPQDSTIATLSVEC-SKALELDL 381
           QP     D F R + +   LR    V+   QQ  L     D    T+ + C  +   L L
Sbjct: 60  QPLPSVVD-FTRLLTAIANLRRYETVIYFSQQMELFGISHDLYSFTILIHCFCRCSRLSL 118

Query: 382 AEALLDQISRCT-NPK--PFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFS 437
           A ++L ++ +   +P    F + L      ++   A  + A M +    P++  Y  L  
Sbjct: 119 ALSILGKMMKLGYDPSIVTFGSLLHGFCLRNRIHDAFSLVASMVKSGYEPNVVVYNTLID 178

Query: 438 LF---GNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIR 494
                G+VN   E   + ++++   R+ A   D+         ++   LL  L   G  R
Sbjct: 179 CLCKNGDVNIALE---LLNEMEKKGRLAA---DL---------VTYNTLLTGLCYSGEWR 223

Query: 495 ELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI 551
           +  +   D       P   T+  ++ + V+      A E++KQM    I PN  TYN +I
Sbjct: 224 QAARILRDMTKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTYNSLI 283

Query: 552 DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIP 611
           +   +      A     +M   G +P  +TY  LI         ++ + L   +  EG+ 
Sbjct: 284 NGLCMHGRLYHAKKTFDLMASKGCFPNVVTYNTLINGFCKSRRVEDGMKLFQRMYREGLV 343

Query: 612 HDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAM 669
            D   YNT++   C+ G++ V + I   M    V PD  T   +  G    G   SAM
Sbjct: 344 GDTFTYNTLIHGYCQVGKLRVAKDIFSWMVSCGVTPDIITHCILLHGLCVNGEIGSAM 401



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 80/391 (20%), Positives = 170/391 (43%), Gaps = 27/391 (6%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           +SF+ +IH   R     LA  ++ +M  LG  PS  T+   +        + +   ++  
Sbjct: 101 YSFTILIHCFCRCSRLSLALSILGKMMKLGYDPSIVTFGSLLHGFCLRNRIHDAFSLVAS 160

Query: 354 MQQNNLKPQDSTIATLSVEC-SKALELDLAEALLDQISR----CTNPKPFSAFLAACDTM 408
           M ++  +P      TL ++C  K  ++++A  LL+++ +      +   ++  L      
Sbjct: 161 MVKSGYEPNVVVYNTL-IDCLCKNGDVNIALELLNEMEKKGRLAADLVTYNTLLTGLCYS 219

Query: 409 DKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMD 467
            +  +A +I   M ++++ PD+ T+  L      ++A  ++GN+    D A+ +      
Sbjct: 220 GEWRQAARILRDMTKRRINPDVFTFTAL------IDAFVKQGNL----DEAQELYK---Q 266

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLG----TPTYNTVLHSLVEAQ 523
           M +++I  + ++  +L+  L   G +    + F D     G      TYNT+++   +++
Sbjct: 267 MLQSSIGPNTVTYNSLINGLCMHGRLYHAKKTF-DLMASKGCFPNVVTYNTLINGFCKSR 325

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
                M++F++M   G+  +  TYN +I     +   + A  + S MV  G  P  +T+ 
Sbjct: 326 RVEDGMKLFQRMYREGLVGDTFTYNTLIHGYCQVGKLRVAKDIFSWMVSCGVTPDIITHC 385

Query: 584 ALIKILLDYGDFDEAL-NLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642
            L+  L   G+   A+    D+ S E     ++ YN ++   C+  +++    +  ++  
Sbjct: 386 ILLHGLCVNGEIGSAMVKFNDMRSGEKYL-GIVAYNIMIHGLCKADKVEEAWELFCRLPV 444

Query: 643 NKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
             V+PD  T   +  G    G    A E  +
Sbjct: 445 EGVKPDARTYTIMILGLCKNGPRREADELFR 475



 Score = 69.3 bits (168), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 78/369 (21%), Positives = 133/369 (36%), Gaps = 49/369 (13%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           +SF+ +IH   R     LA  L+ +M  LG QPS  T    +         +  + ++  
Sbjct: 651 YSFTILIHCFCRCSRFSLALALLGKMMKLGFQPSIVTLGSLLNGFCQGNRFQEAVSLVDS 710

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPER 413
           M +  L+P      T+     K  +L+                                 
Sbjct: 711 MAELGLEPNVVIYNTVINGLCKNRDLN--------------------------------N 738

Query: 414 AIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNN 472
           A++IF  M +K +  D  TY  L S   N              D+A+ +     DM +  
Sbjct: 739 ALEIFYGMEKKGIVADAVTYNTLISGLCNSG---------RWTDAARLLR----DMVKRK 785

Query: 473 IQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAM 529
           I  + I    L+     EG + E   L +            TYN++++          A 
Sbjct: 786 IDPNVIFFTALIDTFVKEGNLLEAKNLYKEMIRRSVHPNILTYNSLINGFCIQGRLGDAK 845

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
            +F  M + G  P+  TYN +I      +  +    L   M   G      TY  LI   
Sbjct: 846 HMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTHQGLVGDAFTYNTLIHGY 905

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649
              G  + A  + + +   G+P D++ YN +L   C  G+I+    ++E + +N++  D 
Sbjct: 906 CQAGKLNVAQKVFNRMVDCGVPPDIVTYNILLDCLCNNGKIEKALVMVEDLQKNQMDVDI 965

Query: 650 STCHFVFSG 658
            T + +  G
Sbjct: 966 ITYNIIIQG 974



 Score = 63.2 bits (152), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 87/184 (47%), Gaps = 7/184 (3%)

Query: 500 FCDSKTPLGTPT---YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSI 556
           FC+       P+   +  VL ++ +  +    + +F +M+  GI  +  ++ I+I C   
Sbjct: 603 FCEMLQSRPIPSIVDFTRVLTAIAKMNKFDIVIYLFHKMENLGISHDLYSFTILIHC--F 660

Query: 557 IRC--FKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDV 614
            RC  F  A AL+  M++ GF P  +T  +L+        F EA++L+D ++  G+  +V
Sbjct: 661 CRCSRFSLALALLGKMMKLGFQPSIVTLGSLLNGFCQGNRFQEAVSLVDSMAELGLEPNV 720

Query: 615 LLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQV 674
           ++YNT++   C+   ++    I   M +  +  D  T + + SG  N G    A   L+ 
Sbjct: 721 VIYNTVINGLCKNRDLNNALEIFYGMEKKGIVADAVTYNTLISGLCNSGRWTDAARLLRD 780

Query: 675 LSMR 678
           +  R
Sbjct: 781 MVKR 784


>gi|357116365|ref|XP_003559952.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Brachypodium distachyon]
          Length = 627

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 80/355 (22%), Positives = 167/355 (47%), Gaps = 16/355 (4%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           S++ ++ A    + +G A  L+  MQ+ G++P   TY   IR +     +   +E+L+ M
Sbjct: 115 SYTTLMRALCAERRTGQAVGLLRDMQASGVRPDVVTYGTLIRGLCDAADVDKAVELLREM 174

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQIS-RCTNPKP--FSAFLAACDTMDKP 411
            ++ ++P     + L     KA   +    + +++S R   P    ++  + +     K 
Sbjct: 175 CESGIEPNVVVYSCLLQGYCKAGRWECVSKVFEEMSGRGIEPDVVMYTGLIDSLCREGKV 234

Query: 412 ERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           ++A ++  KM ++ L P++ TY +L      +N+  +EG++   +  + R N +E  +A 
Sbjct: 235 KKATQVMDKMMERGLEPNVVTYNVL------INSMCKEGSVKEAM--SLRNNMLEKGVAL 286

Query: 471 NNIQHSHI--SMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRA 528
           + + ++ +   +  +L+   A G++ E+I    ++       T+N+V+H L +     +A
Sbjct: 287 DAVTYNTLITGLSGVLEMDEAMGLLEEMIHG--ETMVEPNVVTFNSVIHGLCKTGRMRQA 344

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
            ++   M   G   N  T+N++I     +   K A  L+  M   G  P + TY+ LI  
Sbjct: 345 FQVRDMMAENGCACNLVTFNLLIGGLLRVHKVKKAMELMDEMASSGLEPDSFTYSILING 404

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
                  D A +LL  +  +GI  +++ Y  +L   CE+G ++      ++MH+N
Sbjct: 405 FCKMWQVDRAESLLSKMRRDGIEPELVHYIPLLAALCEQGMMEQARNFFDEMHKN 459



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 88/395 (22%), Positives = 178/395 (45%), Gaps = 35/395 (8%)

Query: 274 SSRLD-----IPIP-----LNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLG 323
           S+RL+     +P+P     L++LP ++    S++ V+ A  R      A   +L++ +  
Sbjct: 50  SARLNRLLRLVPLPESPALLSSLPSVRD-AVSYNTVLAALCRQGGCLDAALFLLRVMAHE 108

Query: 324 LQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAE 383
            +P++ +Y   +RA+ ++R     + +L+ MQ + ++P   T  TL      A ++D A 
Sbjct: 109 TRPTAVSYTTLMRALCAERRTGQAVGLLRDMQASGVRPDVVTYGTLIRGLCDAADVDKAV 168

Query: 384 ALLDQISRC---TNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLF 439
            LL ++       N   +S  L       + E   K+F +M  + + PD+  Y       
Sbjct: 169 ELLREMCESGIEPNVVVYSCLLQGYCKAGRWECVSKVFEEMSGRGIEPDVVMYT------ 222

Query: 440 GNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRE---L 496
           G +++   EG +       K+   +   M    ++ + ++   L+ ++  EG ++E   L
Sbjct: 223 GLIDSLCREGKV-------KKATQVMDKMMERGLEPNVVTYNVLINSMCKEGSVKEAMSL 275

Query: 497 IQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQM--KTCGIPPNAATYNIMI-DC 553
                +    L   TYNT++  L    E   AM + ++M      + PN  T+N +I   
Sbjct: 276 RNNMLEKGVALDAVTYNTLITGLSGVLEMDEAMGLLEEMIHGETMVEPNVVTFNSVIHGL 335

Query: 554 CSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHD 613
           C   R  + A  +  MM  +G     +T+  LI  LL      +A+ L+D ++  G+  D
Sbjct: 336 CKTGR-MRQAFQVRDMMAENGCACNLVTFNLLIGGLLRVHKVKKAMELMDEMASSGLEPD 394

Query: 614 VLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
              Y+ ++   C+  ++D  E ++ +M ++ ++P+
Sbjct: 395 SFTYSILINGFCKMWQVDRAESLLSKMRRDGIEPE 429



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 80/368 (21%), Positives = 149/368 (40%), Gaps = 56/368 (15%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           ++ +I +  R      A Q+M +M   GL+P+  TY+  I ++  +  ++  M +   M 
Sbjct: 221 YTGLIDSLCREGKVKKATQVMDKMMERGLEPNVVTYNVLINSMCKEGSVKEAMSLRNNML 280

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQI-------------------SRCTNPK 396
           +  +     T  TL    S  LE+D A  LL+++                     C   +
Sbjct: 281 EKGVALDAVTYNTLITGLSGVLEMDEAMGLLEEMIHGETMVEPNVVTFNSVIHGLCKTGR 340

Query: 397 PFSAFLA---------ACDTMD------------KPERAIKIFAKMRQK-LRPDIRTYEL 434
              AF           AC+ +             K ++A+++  +M    L PD  TY +
Sbjct: 341 MRQAFQVRDMMAENGCACNLVTFNLLIGGLLRVHKVKKAMELMDEMASSGLEPDSFTYSI 400

Query: 435 LFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIR 494
           L              N F ++    R  ++   M R+ I+   +    LL AL  +GM+ 
Sbjct: 401 LI-------------NGFCKMWQVDRAESLLSKMRRDGIEPELVHYIPLLAALCEQGMME 447

Query: 495 ELIQYFCD--SKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID 552
           +   +F +      L    Y+T++H     ++   A E  K M   G+ P++ TY+++I+
Sbjct: 448 QARNFFDEMHKNCKLDVVAYSTMIHGACRLRDRKSAEEFLKHMLDEGLIPDSVTYSMLIN 507

Query: 553 CCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPH 612
             +      +A  ++  M   GF P    + +LIK     GD ++ L L+  ++ + I  
Sbjct: 508 MFANSGDLGAAERVLKQMTASGFVPDVAVFDSLIKGYGAKGDTEKVLELIREMTAKDIAL 567

Query: 613 DVLLYNTI 620
           D  + +TI
Sbjct: 568 DSKIISTI 575



 Score = 66.2 bits (160), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 91/202 (45%), Gaps = 5/202 (2%)

Query: 476 SHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIF 532
           + +S   L++AL AE    + +    D +     P   TY T++  L +A +  +A+E+ 
Sbjct: 112 TAVSYTTLMRALCAERRTGQAVGLLRDMQASGVRPDVVTYGTLIRGLCDAADVDKAVELL 171

Query: 533 KQMKTCGIPPNAATYNIMIDC-CSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLD 591
           ++M   GI PN   Y+ ++   C   R ++  S +   M   G  P  + YT LI  L  
Sbjct: 172 REMCESGIEPNVVVYSCLLQGYCKAGR-WECVSKVFEEMSGRGIEPDVVMYTGLIDSLCR 230

Query: 592 YGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
            G   +A  ++D +   G+  +V+ YN ++   C++G +     +   M +  V  D  T
Sbjct: 231 EGKVKKATQVMDKMMERGLEPNVVTYNVLINSMCKEGSVKEAMSLRNNMLEKGVALDAVT 290

Query: 652 CHFVFSGYVNCGFHNSAMEALQ 673
            + + +G       + AM  L+
Sbjct: 291 YNTLITGLSGVLEMDEAMGLLE 312



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 47/215 (21%), Positives = 94/215 (43%), Gaps = 5/215 (2%)

Query: 467 DMARNNIQHSHISMKNLLKALGAEGMIR---ELIQYFCDSKTPLGTPTYNTVLHSLVEAQ 523
           DM  + ++   ++   L++ L     +    EL++  C+S        Y+ +L    +A 
Sbjct: 138 DMQASGVRPDVVTYGTLIRGLCDAADVDKAVELLREMCESGIEPNVVVYSCLLQGYCKAG 197

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
                 ++F++M   GI P+   Y  +ID        K A+ ++  M+  G  P  +TY 
Sbjct: 198 RWECVSKVFEEMSGRGIEPDVVMYTGLIDSLCREGKVKKATQVMDKMMERGLEPNVVTYN 257

Query: 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQM--H 641
            LI  +   G   EA++L + +  +G+  D + YNT++        +D    ++E+M   
Sbjct: 258 VLINSMCKEGSVKEAMSLRNNMLEKGVALDAVTYNTLITGLSGVLEMDEAMGLLEEMIHG 317

Query: 642 QNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
           +  V+P+  T + V  G    G    A +   +++
Sbjct: 318 ETMVEPNVVTFNSVIHGLCKTGRMRQAFQVRDMMA 352



 Score = 47.4 bits (111), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 28/122 (22%), Positives = 59/122 (48%), Gaps = 2/122 (1%)

Query: 543 NAATYN-IMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNL 601
           +A +YN ++   C    C  +A  L+ +M  +   P  ++YT L++ L       +A+ L
Sbjct: 77  DAVSYNTVLAALCRQGGCLDAALFLLRVMAHE-TRPTAVSYTTLMRALCAERRTGQAVGL 135

Query: 602 LDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVN 661
           L  +   G+  DV+ Y T+++  C+   +D    ++ +M ++ ++P+      +  GY  
Sbjct: 136 LRDMQASGVRPDVVTYGTLIRGLCDAADVDKAVELLREMCESGIEPNVVVYSCLLQGYCK 195

Query: 662 CG 663
            G
Sbjct: 196 AG 197


>gi|242069877|ref|XP_002450215.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
 gi|241936058|gb|EES09203.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
          Length = 862

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 86/389 (22%), Positives = 164/389 (42%), Gaps = 22/389 (5%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           ++S +I    + Q    AE ++  M   G++P   TY+  I  +   + +     VL+ M
Sbjct: 236 TYSTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRAEGVLQHM 295

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNP--KPFSAFLAACDTMDKP 411
               +KP   T  T+     KA  +D A+ +L   I +   P  + ++  +    +  + 
Sbjct: 296 IDKGVKPDVVTYNTIIDGLCKAQAVDRADGVLQHMIDKDVKPDIQTYNCLIHGYLSTGEW 355

Query: 412 ERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           +  ++   +M  + L PD+ TY LL           E   +F               M R
Sbjct: 356 KEVVRRLEEMYARGLDPDVVTYSLLLDYLCKNGKCTEARKIFYC-------------MIR 402

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYF----CDSKTPLGTPTYNTVLHSLVEAQESH 526
             I+ +      LL    A G I +L         +  +P     +N VL +  +     
Sbjct: 403 KGIKPNVTIYGILLHGYAARGAIADLTDLLDLMVANGISP-NNYIFNIVLCAYAKKAMID 461

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
            AM IF +M   G+ P+  TY I+ID    +     A    + M+ DG  P ++ + +L+
Sbjct: 462 EAMHIFSRMSQHGLSPDVVTYGILIDALCKLGRVDDAVLKFNQMINDGVTPNSVVFNSLV 521

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
             L     +++A  L   +  +G+  +V+ +NTI+   C +G++ V + +I+ M +  V+
Sbjct: 522 YGLCTVDRWEKAEELFFEMWDQGVRPNVVFFNTIMCNLCNEGQVMVAQRLIDSMERVGVR 581

Query: 647 PDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
           P+  + + +  G+   G  + A + L V+
Sbjct: 582 PNVISYNTLIGGHCLAGRTDEAAQLLDVM 610



 Score = 93.2 bits (230), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 84/354 (23%), Positives = 147/354 (41%), Gaps = 43/354 (12%)

Query: 374 SKALELDLAEALLDQISRCTNPKPFSAF------LAACDTMDKPERAIKIFAKMRQ---- 423
           S +L +D A  L D++     P    AF      +A        E A+ +F +M +    
Sbjct: 25  SGSLGIDDALKLFDELLPHARPASVRAFNHLLNVVARARCSSTSELAVSLFNRMARACSN 84

Query: 424 KLRPDIRTYELL---FSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSH--- 477
           K+RPD+ TY +L   F   G +   +    +   + +  R+N + ++   N +  +    
Sbjct: 85  KVRPDLCTYSILTGCFCRLGRIEHGFAAFGLI--LKTGWRVNEVVINQLLNGLCDAKRVD 142

Query: 478 -------------------ISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTP---TY 512
                              +S   LLK L  E  + E   L+    +      TP   TY
Sbjct: 143 EAMDILLRRMPEFGCMPNVVSCNTLLKGLCNEKRVEEALELLHTMAEDGGGNCTPNVVTY 202

Query: 513 NTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVR 572
           NT++  L +AQ   RA  + + M   G+  +  TY+ +ID     +    A  ++  M+ 
Sbjct: 203 NTIIDGLCKAQAVDRAEGVLQHMIDKGVKLDVVTYSTIIDGLCKAQAVDRAEGVLQHMID 262

Query: 573 DGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDV 632
            G  P  +TY  +I  L      D A  +L  +  +G+  DV+ YNTI+   C+   +D 
Sbjct: 263 KGVKPDVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDR 322

Query: 633 IEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
            + +++ M    V+PD  T + +  GY++ G     +  L+ +  R L  +V T
Sbjct: 323 ADGVLQHMIDKDVKPDIQTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDPDVVT 376



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 111/582 (19%), Positives = 227/582 (39%), Gaps = 59/582 (10%)

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
           M +K + L+   Y  ++  LCK   ++ A  ++  + ++ G+ P +  YN+ +    K  
Sbjct: 225 MIDKGVKLDVVTYSTIIDGLCKAQAVDRAEGVLQHMIDK-GVKPDVVTYNTIIDGLCKAQ 283

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYSLSIFSLR 231
           ++  A   L  M  + V  + VTY  ++      + +     + +  I K     I +  
Sbjct: 284 AVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRADGVLQHMIDKDVKPDIQTYN 343

Query: 232 KFVWSFTRLRDLKSAYETLQHMVALAMMGKL--------YINRTSEGRLRSSRLDIPIPL 283
             +  +    + K     L+ M A  +   +        Y+ +  +           I  
Sbjct: 344 CLIHGYLSTGEWKEVVRRLEEMYARGLDPDVVTYSLLLDYLCKNGKCTEARKIFYCMIRK 403

Query: 284 NALPVMKVLRWSFSDVIHACGRTQNSGLAE--QLMLQMQSLGLQPSSHTYDGFIRAIVSD 341
              P + +    +  ++H  G      +A+   L+  M + G+ P+++ ++  + A    
Sbjct: 404 GIKPNVTI----YGILLH--GYAARGAIADLTDLLDLMVANGISPNNYIFNIVLCAYAKK 457

Query: 342 RGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI---SRCTNPKPF 398
             +   M +   M Q+ L P   T   L     K   +D A    +Q+       N   F
Sbjct: 458 AMIDEAMHIFSRMSQHGLSPDVVTYGILIDALCKLGRVDDAVLKFNQMINDGVTPNSVVF 517

Query: 399 SAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQ--V 455
           ++ +    T+D+ E+A ++F +M  Q +RP++  +  +     N     E   M +Q  +
Sbjct: 518 NSLVYGLCTVDRWEKAEELFFEMWDQGVRPNVVFFNTIMCNLCN-----EGQVMVAQRLI 572

Query: 456 DSAKRINAIEMDMARNNIQHSHI------SMKNLLKALGAEGMIRELIQY------FCDS 503
           DS +R+      ++ N +   H           LL  + + G+  +LI Y      +C +
Sbjct: 573 DSMERVGVRPNVISYNTLIGGHCLAGRTDEAAQLLDVMVSVGLKPDLISYDTLLRGYCKT 632

Query: 504 K-----------------TPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAAT 546
                             TP G  TY+T+L  L   +    A E++  M   G   +  T
Sbjct: 633 GRIDNAYCLFREMLRKGVTP-GAVTYSTILQGLFHTRRFSEAKELYLNMIKSGQQWDIYT 691

Query: 547 YNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVS 606
           YNI+++      C   A  +   +      P  +T+T +I +L   G   +A++L   + 
Sbjct: 692 YNIILNGLCKTNCVDEAFKIFQSLCSKDLRPNIITFTIMIDVLFKGGRKKDAMDLFASIP 751

Query: 607 LEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
             G+  +V+ Y  ++K   ++G +D  + +   M ++   PD
Sbjct: 752 SHGLVPNVVTYCIMMKNIIQEGLLDEFDNLFLAMEKSGCTPD 793



 Score = 74.3 bits (181), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 108/572 (18%), Positives = 223/572 (38%), Gaps = 23/572 (4%)

Query: 128 MMQALCKGGYLEEASNLIYFLGERYG--IYPILPVYNSFLGACAKLHSMVHANLCLDLMD 185
           +++ LC    +EEA  L++ + E  G    P +  YN+ +    K  ++  A   L  M 
Sbjct: 167 LLKGLCNEKRVEEALELLHTMAEDGGGNCTPNVVTYNTIIDGLCKAQAVDRAEGVLQHMI 226

Query: 186 SRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYSLSIFSLRKFVWSFTRLRDLK 244
            + V  + VTY+ ++      + +     + +  I K     + +    +    + + + 
Sbjct: 227 DKGVKLDVVTYSTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVD 286

Query: 245 SAYETLQHMVALAMMGKLYI-NRTSEGRLRSSRLDIPIPLNALPVMKVLR---WSFSDVI 300
            A   LQHM+   +   +   N   +G  ++  +D    +    + K ++    +++ +I
Sbjct: 287 RAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRADGVLQHMIDKDVKPDIQTYNCLI 346

Query: 301 HACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLK 360
           H    T       + + +M + GL P   TY   +  +  +       ++   M +  +K
Sbjct: 347 HGYLSTGEWKEVVRRLEEMYARGLDPDVVTYSLLLDYLCKNGKCTEARKIFYCMIRKGIK 406

Query: 361 PQDSTIATL-SVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKP--ERAIKI 417
           P  +    L     ++    DL + L   ++   +P  +   +  C    K   + A+ I
Sbjct: 407 PNVTIYGILLHGYAARGAIADLTDLLDLMVANGISPNNYIFNIVLCAYAKKAMIDEAMHI 466

Query: 418 FAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQ-VDSAKRINAIEMDMARNNIQH 475
           F++M Q  L PD+ TY +L      +    +    F+Q ++     N++      N++ +
Sbjct: 467 FSRMSQHGLSPDVVTYGILIDALCKLGRVDDAVLKFNQMINDGVTPNSVVF----NSLVY 522

Query: 476 SHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQM 535
              ++    KA        EL     D         +NT++ +L    +   A  +   M
Sbjct: 523 GLCTVDRWEKA-------EELFFEMWDQGVRPNVVFFNTIMCNLCNEGQVMVAQRLIDSM 575

Query: 536 KTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDF 595
           +  G+ PN  +YN +I    +      A+ L+ +MV  G  P  ++Y  L++     G  
Sbjct: 576 ERVGVRPNVISYNTLIGGHCLAGRTDEAAQLLDVMVSVGLKPDLISYDTLLRGYCKTGRI 635

Query: 596 DEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFV 655
           D A  L   +  +G+    + Y+TIL+      R    + +   M ++  Q D  T + +
Sbjct: 636 DNAYCLFREMLRKGVTPGAVTYSTILQGLFHTRRFSEAKELYLNMIKSGQQWDIYTYNII 695

Query: 656 FSGYVNCGFHNSAMEALQVLSMRMLCEEVSTL 687
            +G       + A +  Q L  + L   + T 
Sbjct: 696 LNGLCKTNCVDEAFKIFQSLCSKDLRPNIITF 727



 Score = 62.8 bits (151), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 124/664 (18%), Positives = 254/664 (38%), Gaps = 84/664 (12%)

Query: 25  HERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGER-SRASHLLLNLGHAHH 83
           +E+R V   LEL  T+    G N    +  T   I+D LC+ +   RA  +L ++     
Sbjct: 173 NEKR-VEEALELLHTMAEDGGGNCTP-NVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGV 230

Query: 84  SLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASN 143
            L    +  I++   ++          + M +K +  +   Y  ++  LCK   ++ A  
Sbjct: 231 KLDVVTYSTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRAEG 290

Query: 144 LIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTEL---- 199
           ++  + ++ G+ P +  YN+ +    K  ++  A+  L  M  + V  +  TY  L    
Sbjct: 291 VLQHMIDK-GVKPDVVTYNTIIDGLCKAQAVDRADGVLQHMIDKDVKPDIQTYNCLIHGY 349

Query: 200 LKLAVWQKNLSAVHEIW----EDYIKHYSLSIFSL---------RKFVWSFTR--LRDLK 244
           L    W++ +  + E++    +  +  YSL +  L         RK  +   R  ++   
Sbjct: 350 LSTGEWKEVVRRLEEMYARGLDPDVVTYSLLLDYLCKNGKCTEARKIFYCMIRKGIKPNV 409

Query: 245 SAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALP---VMKVLRWSFS---- 297
           + Y  L H          Y  R +   L +  LD+ +     P   +  ++  +++    
Sbjct: 410 TIYGILLHG---------YAARGAIADL-TDLLDLMVANGISPNNYIFNIVLCAYAKKAM 459

Query: 298 --DVIHACGRTQNSGLAEQLML----------------------QMQSLGLQPSSHTYDG 333
             + +H   R    GL+  ++                       QM + G+ P+S  ++ 
Sbjct: 460 IDEAMHIFSRMSQHGLSPDVVTYGILIDALCKLGRVDDAVLKFNQMINDGVTPNSVVFNS 519

Query: 334 FIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT 393
            +  + +        E+   M    ++P      T+        ++ +A+ L+D + R  
Sbjct: 520 LVYGLCTVDRWEKAEELFFEMWDQGVRPNVVFFNTIMCNLCNEGQVMVAQRLIDSMERVG 579

Query: 394 ---NPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEG 449
              N   ++  +       + + A ++   M    L+PD+ +Y+ L   +          
Sbjct: 580 VRPNVISYNTLIGGHCLAGRTDEAAQLLDVMVSVGLKPDLISYDTLLRGYCKT------- 632

Query: 450 NMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCD---SKTP 506
               ++D+A     +  +M R  +    ++   +L+ L       E  + + +   S   
Sbjct: 633 ---GRIDNAY---CLFREMLRKGVTPGAVTYSTILQGLFHTRRFSEAKELYLNMIKSGQQ 686

Query: 507 LGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASAL 566
               TYN +L+ L +      A +IF+ + +  + PN  T+ IMID        K A  L
Sbjct: 687 WDIYTYNIILNGLCKTNCVDEAFKIFQSLCSKDLRPNIITFTIMIDVLFKGGRKKDAMDL 746

Query: 567 VSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE 626
            + +   G  P  +TY  ++K ++  G  DE  NL   +   G   D ++ N I++    
Sbjct: 747 FASIPSHGLVPNVVTYCIMMKNIIQEGLLDEFDNLFLAMEKSGCTPDSVMLNAIIRSLLG 806

Query: 627 KGRI 630
           +G I
Sbjct: 807 RGEI 810


>gi|326491875|dbj|BAJ98162.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 628

 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 101/432 (23%), Positives = 168/432 (38%), Gaps = 61/432 (14%)

Query: 287 PVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRN 346
           PV  V     SD+I   G  +    A  +  Q+++   QP++H Y+  I  ++ +     
Sbjct: 149 PVCVVTPMELSDIIRMLGNAKMISKAVAIFYQIKARKCQPTAHAYNSMIIMLMHEGEYEK 208

Query: 347 GMEVLKIM-QQNNLKPQDSTIATLSVECSKALELDLAEALLDQI---SRCTNPKPFSAFL 402
             E+   M  +    P   T + L     K    D A  LL+++         K ++  +
Sbjct: 209 VHELYNEMSNEGQCFPDTVTYSALISAFCKLGRQDSAIWLLNEMKDNGMQPTAKIYTMLM 268

Query: 403 AACDTMDKPERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI 461
           A    +D    A+ +F +MR Q  RPD+ TY  L    G      E  N F +       
Sbjct: 269 ALLFKLDNVHGALGLFEEMRHQYCRPDVFTYTELIRGLGKAGRLDEAYNFFHE------- 321

Query: 462 NAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHS 518
                 M R   +   + M N++  LG  G + + I+ F + +T    P   TYNT++ +
Sbjct: 322 ------MRREGCRPDTVLMNNMINFLGKAGRLDDAIKLFEEMETLRCIPSVVTYNTIIKA 375

Query: 519 LVEAQESHRAMEI---FKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGF 575
           L E++   R  EI   F++MK  GI P+  TY+I+ID        + A  L+  M   GF
Sbjct: 376 LFESKS--RVSEISSWFERMKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGF 433

Query: 576 YP-----------------------------------QTMTYTALIKILLDYGDFDEALN 600
            P                                       Y  +IK L   G  D+A++
Sbjct: 434 PPCPAAYCSLIDALGKAKRYDLANELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAVD 493

Query: 601 LLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYV 660
           L D ++  G   +V  YN ++      G +D     + +M  +   PD ++ + + +   
Sbjct: 494 LFDEMNRLGCTPNVYAYNALMSGLARAGMLDEALTTMRRMQDHGCIPDINSYNIILNALA 553

Query: 661 NCGFHNSAMEAL 672
             G  + AM  L
Sbjct: 554 KTGGPDRAMGML 565



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 95/483 (19%), Positives = 182/483 (37%), Gaps = 85/483 (17%)

Query: 155 YPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHE 214
           +P    Y++ + A  KL     A   L+ M    +      YT L+ L     N+     
Sbjct: 223 FPDTVTYSALISAFCKLGRQDSAIWLLNEMKDNGMQPTAKIYTMLMALLFKLDNVHGALG 282

Query: 215 IWEDYIKHYSL-SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLR 273
           ++E+    Y    +F+  + +    +   L  AY     M                 R  
Sbjct: 283 LFEEMRHQYCRPDVFTYTELIRGLGKAGRLDEAYNFFHEM-----------------RRE 325

Query: 274 SSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDG 333
             R D  +               +++I+  G+      A +L  +M++L   PS  TY+ 
Sbjct: 326 GCRPDTVL--------------MNNMINFLGKAGRLDDAIKLFEEMETLRCIPSVVTYNT 371

Query: 334 FIRAIVSDRGLRNGMEV-LKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRC 392
            I+A+   +   + +    + M+ + + P   T + L     K    + A  LL+++   
Sbjct: 372 IIKALFESKSRVSEISSWFERMKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEK 431

Query: 393 TNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMF 452
             P   +A+ +  D + K +R                  Y+L   LF  +       N  
Sbjct: 432 GFPPCPAAYCSLIDALGKAKR------------------YDLANELFQELKE-----NCG 468

Query: 453 SQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLG-TP- 510
           S   S+ R+ A+                  ++K LG  G + + +  F D    LG TP 
Sbjct: 469 S---SSARVYAV------------------MIKHLGKAGRLDDAVDLF-DEMNRLGCTPN 506

Query: 511 --TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVS 568
              YN ++  L  A     A+   ++M+  G  P+  +YNI+++  +       A  ++ 
Sbjct: 507 VYAYNALMSGLARAGMLDEALTTMRRMQDHGCIPDINSYNIILNALAKTGGPDRAMGMLC 566

Query: 569 MMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
            M +    P  ++Y  ++  L   G F+EA  L+  ++  G  +D++ Y++IL+     G
Sbjct: 567 NMKQSAIKPDAVSYNTVLGALSHAGMFEEAAKLMKEMNAIGFDYDLITYSSILEAI---G 623

Query: 629 RID 631
           ++D
Sbjct: 624 KVD 626



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 81/391 (20%), Positives = 155/391 (39%), Gaps = 20/391 (5%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERY--GIYPILPVYNSFLGACAKLHSMVHANLCL- 181
           Y  ++ A CK G  + A   I+ L E    G+ P   +Y   +    KL + VH  L L 
Sbjct: 229 YSALISAFCKLGRQDSA---IWLLNEMKDNGMQPTAKIYTMLMALLFKLDN-VHGALGLF 284

Query: 182 DLMDSRMVGKNEVTYTELL----KLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSF 237
           + M  +    +  TYTEL+    K     +  +  HE+  +  +  ++ + ++  F+   
Sbjct: 285 EEMRHQYCRPDVFTYTELIRGLGKAGRLDEAYNFFHEMRREGCRPDTVLMNNMINFLGKA 344

Query: 238 TRLRDLKSAYETLQHM--VALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWS 295
            RL D    +E ++ +  +   +     I    E + R S +           +    ++
Sbjct: 345 GRLDDAIKLFEEMETLRCIPSVVTYNTIIKALFESKSRVSEISSWFERMKGSGISPSPFT 404

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           +S +I    +T  +  A  L+ +M   G  P    Y   I A+   +      E+ + ++
Sbjct: 405 YSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLANELFQELK 464

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQISR--CT-NPKPFSAFLAACDTMDKPE 412
           +N         A +     KA  LD A  L D+++R  CT N   ++A ++        +
Sbjct: 465 ENCGSSSARVYAVMIKHLGKAGRLDDAVDLFDEMNRLGCTPNVYAYNALMSGLARAGMLD 524

Query: 413 RAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQV-DSAKRINAIEMDMAR 470
            A+    +M+     PDI +Y ++ +       P     M   +  SA + +A+  +   
Sbjct: 525 EALTTMRRMQDHGCIPDINSYNIILNALAKTGGPDRAMGMLCNMKQSAIKPDAVSYNTVL 584

Query: 471 NNIQHSHI--SMKNLLKALGAEGMIRELIQY 499
             + H+ +      L+K + A G   +LI Y
Sbjct: 585 GALSHAGMFEEAAKLMKEMNAIGFDYDLITY 615


>gi|357167655|ref|XP_003581269.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 587

 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 111/455 (24%), Positives = 192/455 (42%), Gaps = 60/455 (13%)

Query: 268 SEGRLRSSRLD-IPIPLNALPVMKVLRWSFSDVIHA-CGRTQNSGLAEQLMLQMQSLGLQ 325
           ++G  R  RLD     ++ +PV+    ++++ ++HA C R Q    A  L+  M   G  
Sbjct: 127 ADGYCRVGRLDEARRVVDGMPVLPS-AYAYNPLMHALCVRGQVRD-ALVLLDNMLYRGCA 184

Query: 326 PSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEAL 385
           P   TY+  + A    RG R  ME++ +M+     P + T   +     +  ++D A  L
Sbjct: 185 PDVVTYNILLEAACKGRGYRQAMELIDLMRVEGCTPTNVTYNVIMDGMCREGDVDYAREL 244

Query: 386 LDQISR--CT-NPKPFSAFLAACDTMDKPE------------------------------ 412
           L+ +    CT N   ++  L    T  + E                              
Sbjct: 245 LNSLPSYGCTPNTVNYNTVLKGLRTAGRWEDVEELIAEMFSENCPPSEATLSVVISSLCQ 304

Query: 413 -----RAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM 466
                RAI++  KM +     +I TY  + S  G     + +G ++        ++ ++ 
Sbjct: 305 EGLFQRAIRLLEKMSKHDCTANIVTYNAVVS--GLCEQGHVDGALY-------LLSNMQT 355

Query: 467 DMARNNIQHSHISMKNLLKAL---GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQ 523
           D  + NI   +I +K L  A     AE ++ ++ Q  C         T+NT++  L +  
Sbjct: 356 DGCKPNIFTYNILVKGLCNAERWEDAEDLMAKMSQTDCLPDIL----TFNTIIGFLCQKG 411

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
            + +A+E+FKQM   G  PN+ TY+ +I+  +     + +  L++ M   GF P+ + Y 
Sbjct: 412 LTMQAVEVFKQMPEKGCCPNSVTYSSVIEGLAKTGKMEQSLELLNEMGSKGFNPE-INYH 470

Query: 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
            L + L +     EA+ ++  +   GI    +LYNTIL   C  G+ D    I+  M  +
Sbjct: 471 LLAECLNEEDKLVEAIQMVHKLQDTGISPQAVLYNTILLGLCRNGKTDQAIDILSNMVSD 530

Query: 644 KVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678
              PD ST   +  G  + G+   A E L  LS R
Sbjct: 531 GCMPDESTYSILIQGLAHEGYMKEARELLSTLSSR 565



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 83/193 (43%), Gaps = 4/193 (2%)

Query: 489 AEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYN 548
           A  ++  L  Y C   TP  T  YNTVL  L  A       E+  +M +   PP+ AT +
Sbjct: 241 ARELLNSLPSYGC---TP-NTVNYNTVLKGLRTAGRWEDVEELIAEMFSENCPPSEATLS 296

Query: 549 IMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLE 608
           ++I        F+ A  L+  M +       +TY A++  L + G  D AL LL  +  +
Sbjct: 297 VVISSLCQEGLFQRAIRLLEKMSKHDCTANIVTYNAVVSGLCEQGHVDGALYLLSNMQTD 356

Query: 609 GIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSA 668
           G   ++  YN ++K  C   R +  E ++ +M Q    PD  T + +       G    A
Sbjct: 357 GCKPNIFTYNILVKGLCNAERWEDAEDLMAKMSQTDCLPDILTFNTIIGFLCQKGLTMQA 416

Query: 669 MEALQVLSMRMLC 681
           +E  + +  +  C
Sbjct: 417 VEVFKQMPEKGCC 429



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 88/211 (41%), Gaps = 3/211 (1%)

Query: 478 ISMKNLLKALGAEGM---IRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQ 534
           ++   +LK L   G    + ELI        P    T + V+ SL +     RA+ + ++
Sbjct: 258 VNYNTVLKGLRTAGRWEDVEELIAEMFSENCPPSEATLSVVISSLCQEGLFQRAIRLLEK 317

Query: 535 MKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGD 594
           M       N  TYN ++           A  L+S M  DG  P   TY  L+K L +   
Sbjct: 318 MSKHDCTANIVTYNAVVSGLCEQGHVDGALYLLSNMQTDGCKPNIFTYNILVKGLCNAER 377

Query: 595 FDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHF 654
           +++A +L+  +S      D+L +NTI+   C+KG       + +QM +    P+  T   
Sbjct: 378 WEDAEDLMAKMSQTDCLPDILTFNTIIGFLCQKGLTMQAVEVFKQMPEKGCCPNSVTYSS 437

Query: 655 VFSGYVNCGFHNSAMEALQVLSMRMLCEEVS 685
           V  G    G    ++E L  +  +    E++
Sbjct: 438 VIEGLAKTGKMEQSLELLNEMGSKGFNPEIN 468



 Score = 55.1 bits (131), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 109/507 (21%), Positives = 197/507 (38%), Gaps = 67/507 (13%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILP---VYNSFLGACAKLHSMVHANLCL 181
           Y  +    C+ G L+EA  ++  +       P+LP    YN  + A      +  A + L
Sbjct: 123 YSALADGYCRVGRLDEARRVVDGM-------PVLPSAYAYNPLMHALCVRGQVRDALVLL 175

Query: 182 DLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDY-IKHYSLSIFSLRKFVWSFTRL 240
           D M  R    + VTY  LL+ A   +      E+ +   ++  + +  +    +    R 
Sbjct: 176 DNMLYRGCAPDVVTYNILLEAACKGRGYRQAMELIDLMRVEGCTPTNVTYNVIMDGMCRE 235

Query: 241 RDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVI 300
            D+  A E L  + +                        P  +N   V+K LR +     
Sbjct: 236 GDVDYARELLNSLPSYGC--------------------TPNTVNYNTVLKGLRTA----- 270

Query: 301 HACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLK 360
              GR ++    E+L+ +M S    PS  T    I ++  +   +  + +L+ M +++  
Sbjct: 271 ---GRWED---VEELIAEMFSENCPPSEATLSVVISSLCQEGLFQRAIRLLEKMSKHDCT 324

Query: 361 PQDSTI-ATLSVECSKALELDLAEALLD--QISRC-TNPKPFSAFLAACDTMDKPERAIK 416
               T  A +S  C +   +D A  LL   Q   C  N   ++  +      ++ E A  
Sbjct: 325 ANIVTYNAVVSGLCEQG-HVDGALYLLSNMQTDGCKPNIFTYNILVKGLCNAERWEDAED 383

Query: 417 IFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQH 475
           + AKM Q    PDI T+  +           +   +F Q+         E     N++ +
Sbjct: 384 LMAKMSQTDCLPDILTFNTIIGFLCQKGLTMQAVEVFKQMP--------EKGCCPNSVTY 435

Query: 476 SHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP--TYNTVLHSLVEAQESHRAMEIFK 533
           S +     ++ L   G + + ++   +  +    P   Y+ +   L E  +   A+++  
Sbjct: 436 SSV-----IEGLAKTGKMEQSLELLNEMGSKGFNPEINYHLLAECLNEEDKLVEAIQMVH 490

Query: 534 QMKTCGIPPNAATYNIMIDCCSIIRCFKSASAL--VSMMVRDGFYPQTMTYTALIKILLD 591
           +++  GI P A  YN ++    + R  K+  A+  +S MV DG  P   TY+ LI+ L  
Sbjct: 491 KLQDTGISPQAVLYNTIL--LGLCRNGKTDQAIDILSNMVSDGCMPDESTYSILIQGLAH 548

Query: 592 YGDFDEALNLLDLVSLEGIPHDVLLYN 618
            G   EA  LL  +S   +  D L+ N
Sbjct: 549 EGYMKEARELLSTLSSRDVIVDNLIKN 575


>gi|357117807|ref|XP_003560653.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Brachypodium distachyon]
          Length = 692

 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 78/346 (22%), Positives = 134/346 (38%), Gaps = 41/346 (11%)

Query: 318 QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKAL 377
           +M+  G+  +  T+  F+ A   +  +R  M++   M+   +KP + T   L     KA 
Sbjct: 289 EMKREGVMANVVTFSTFVDAFCKNGMVREAMKLFAQMRMKGMKPNEVTYTCLVDGTCKAG 348

Query: 378 ELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFS 437
            LD A  L +++ +   P     +    D + K  +  +     R   R  IR  ELL++
Sbjct: 349 RLDDALVLTNEMVQQGVPLNVVTYTVLVDGLCKEGKVAEAEDVFRLMERAGIRANELLYT 408

Query: 438 LFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELI 497
                                              + H H   KN  +AL        L+
Sbjct: 409 ----------------------------------TLIHGHFVYKNSERAL-------SLL 427

Query: 498 QYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSII 557
               D    L    Y  ++  L   Q+   A  +  +M  CG+ PN   Y  ++D C   
Sbjct: 428 SEMKDKGMELDVSLYGALIWGLCNLQKLDEAKSLLNKMDECGLKPNNVIYTNIMDACFKA 487

Query: 558 RCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLY 617
           R    A AL+  M+  GF P  +TY AL+  L   G  DEA++  + +   G+  +V  Y
Sbjct: 488 RKESEAIALLQKMMDSGFRPNIVTYCALVDGLCKAGSIDEAISHFNKMVDLGLEPNVQAY 547

Query: 618 NTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
             ++   C+ GR+D    ++++M    +  D   C  +  G++  G
Sbjct: 548 TALVDGLCKNGRLDKAVLLLDEMIDKGMSLDNVVCTSLMDGHLKQG 593



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 68/159 (42%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           T+N ++  L +  +   A  +  +MK  G  P+  TYN +ID        +    LV  M
Sbjct: 196 TFNIMIDFLCKEGDLAEARALLARMKAIGCSPDVVTYNSLIDGYGKCGELEEVEKLVGEM 255

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
              G  P  +TY AL+     +G  + A +    +  EG+  +V+ ++T +   C+ G +
Sbjct: 256 RGCGCRPDVVTYNALVNCFCKFGRMERAYSYFAEMKREGVMANVVTFSTFVDAFCKNGMV 315

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAM 669
                +  QM    ++P+  T   +  G    G  + A+
Sbjct: 316 REAMKLFAQMRMKGMKPNEVTYTCLVDGTCKAGRLDDAL 354



 Score = 59.3 bits (142), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 82/178 (46%), Gaps = 10/178 (5%)

Query: 504 KTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSA 563
           + P  T T N +L  L   + S  A  +F+Q+      PN  T+NIMID          A
Sbjct: 158 RVPPNTRTCNHILLCLARERSSELAWRLFEQLPA----PNVFTFNIMIDFLCKEGDLAEA 213

Query: 564 SALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKK 623
            AL++ M   G  P  +TY +LI      G+ +E   L+  +   G   DV+ YN ++  
Sbjct: 214 RALLARMKAIGCSPDVVTYNSLIDGYGKCGELEEVEKLVGEMRGCGCRPDVVTYNALVNC 273

Query: 624 ACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAM-EALQVLS-MRM 679
            C+ GR++       +M +  V  +  T    FS +V+    N  + EA+++ + MRM
Sbjct: 274 FCKFGRMERAYSYFAEMKREGVMANVVT----FSTFVDAFCKNGMVREAMKLFAQMRM 327



 Score = 47.0 bits (110), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 67/150 (44%), Gaps = 8/150 (5%)

Query: 513 NTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVR 572
           +T+L  L +      A+    +++   +PPN  T N ++ C +  R    +S L   +  
Sbjct: 132 DTLLSLLADRGLLDDAVLALARVRELRVPPNTRTCNHILLCLARER----SSELAWRLFE 187

Query: 573 DGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDV 632
               P   T+  +I  L   GD  EA  LL  +   G   DV+ YN+++    + G ++ 
Sbjct: 188 QLPAPNVFTFNIMIDFLCKEGDLAEARALLARMKAIGCSPDVVTYNSLIDGYGKCGELEE 247

Query: 633 IEFIIEQMHQNKVQPDPSTCHFVFSGYVNC 662
           +E ++ +M     +PD  T    ++  VNC
Sbjct: 248 VEKLVGEMRGCGCRPDVVT----YNALVNC 273


>gi|224064580|ref|XP_002301519.1| predicted protein [Populus trichocarpa]
 gi|222843245|gb|EEE80792.1| predicted protein [Populus trichocarpa]
          Length = 718

 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 119/281 (42%), Gaps = 16/281 (5%)

Query: 397 PFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQV 455
            FSA ++A         AIKIF  M+   L+P++ TY  +    G     +         
Sbjct: 114 AFSAIISAYGRSGYCNEAIKIFYSMKDYGLKPNLVTYNAVIDACGKGGVEF--------- 164

Query: 456 DSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGM---IRELIQYFCDSKTPLGTPTY 512
              KR+  I  +M RN +Q   I+  +LL      G+    R L     +        TY
Sbjct: 165 ---KRVLEIFDEMLRNGMQPDRITFNSLLAVCSKGGLWEAARSLSCEMVNRGIDQDIFTY 221

Query: 513 NTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVR 572
           NT+L ++ +  +   A EI  +M    I PN  TY+ MID  +       A  L + M  
Sbjct: 222 NTLLDAVCKGGQLDMAFEIMSEMPAKNILPNVVTYSTMIDGYAKAGRLDDARNLFNEMKF 281

Query: 573 DGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDV 632
            G     ++Y  L+ I    G F+EA+++   +   GI  DV+ YN +L    ++ + DV
Sbjct: 282 LGISLDRVSYNTLLSIYAKLGRFEEAMDVCREMENSGIRKDVVTYNALLGGYGKQYKYDV 341

Query: 633 IEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           +  + E+M    V P+  T   +   Y   G +  AM+  +
Sbjct: 342 VRKVFEEMKARHVSPNLLTYSTLIDVYSKGGLYREAMDVFR 382



 Score = 88.2 bits (217), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 86/360 (23%), Positives = 159/360 (44%), Gaps = 30/360 (8%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRG---LRNGMEV 350
           ++FS +I A GR+     A ++   M+  GL+P+  TY+  I A    +G    +  +E+
Sbjct: 113 YAFSAIISAYGRSGYCNEAIKIFYSMKDYGLKPNLVTYNAVIDA--CGKGGVEFKRVLEI 170

Query: 351 LKIMQQNNLKPQDSTIATLSVECSKALELDLAEAL-LDQISRCTNPKPFS--AFLAACDT 407
              M +N ++P   T  +L   CSK    + A +L  + ++R  +   F+    L A   
Sbjct: 171 FDEMLRNGMQPDRITFNSLLAVCSKGGLWEAARSLSCEMVNRGIDQDIFTYNTLLDAVCK 230

Query: 408 MDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM 466
             + + A +I ++M  K + P++ TY  +   +       +  N+F+++    +   I +
Sbjct: 231 GGQLDMAFEIMSEMPAKNILPNVVTYSTMIDGYAKAGRLDDARNLFNEM----KFLGISL 286

Query: 467 DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFC----DSKTPLGTPTYNTVLHSLVEA 522
           D          +S   LL      G   E +   C    +S       TYN +L    + 
Sbjct: 287 D---------RVSYNTLLSIYAKLGRFEEAMD-VCREMENSGIRKDVVTYNALLGGYGKQ 336

Query: 523 QESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTY 582
            +     ++F++MK   + PN  TY+ +ID  S    ++ A  +     + G     + Y
Sbjct: 337 YKYDVVRKVFEEMKARHVSPNLLTYSTLIDVYSKGGLYREAMDVFREFKKAGLKADVVLY 396

Query: 583 TALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642
           +ALI  L   G  + A++LLD ++ EGI  +V+ YN+I+      GR    E +++   Q
Sbjct: 397 SALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAF---GRPATTESVVDDAGQ 453



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 110/534 (20%), Positives = 205/534 (38%), Gaps = 73/534 (13%)

Query: 119 GLNNKCYLL--MMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVH 176
           G  N  Y    ++ A  + GY  EA  + Y + + YG+ P L  YN+ + AC K    V 
Sbjct: 107 GYGNTVYAFSAIISAYGRSGYCNEAIKIFYSMKD-YGLKPNLVTYNAVIDACGK--GGVE 163

Query: 177 ANLCLDLMDSRM---VGKNEVTYTELL----KLAVWQKNLSAVHEIWEDYIKHYSLSIFS 229
               L++ D  +   +  + +T+  LL    K  +W+   S   E+    I      IF+
Sbjct: 164 FKRVLEIFDEMLRNGMQPDRITFNSLLAVCSKGGLWEAARSLSCEMVNRGIDQ---DIFT 220

Query: 230 LRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTS-EGRLRSSRLDIP-------- 280
               + +  +   L  A+E +  M A  ++  +    T  +G  ++ RLD          
Sbjct: 221 YNTLLDAVCKGGQLDMAFEIMSEMPAKNILPNVVTYSTMIDGYAKAGRLDDARNLFNEMK 280

Query: 281 --------IPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYD 332
                   +  N L  +      F + +  C   +NSG+ + ++     LG     + YD
Sbjct: 281 FLGISLDRVSYNTLLSIYAKLGRFEEAMDVCREMENSGIRKDVVTYNALLGGYGKQYKYD 340

Query: 333 GFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRC 392
             +R            +V + M+  ++ P   T +TL    SK      A  +  +  + 
Sbjct: 341 -VVR------------KVFEEMKARHVSPNLLTYSTLIDVYSKGGLYREAMDVFREFKKA 387

Query: 393 TNPKPFSAFLAACDTMDKP---ERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEE 448
                   + A  D + K    E A+ +  +M ++ +RP++ TY  +   FG        
Sbjct: 388 GLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFG------RP 441

Query: 449 GNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLG 508
               S VD A + + +++D        S  +++   K+L A+     +I+ F        
Sbjct: 442 ATTESVVDDAGQTSELQID------SLSSSAVEKATKSLVADREDNRIIKIFGQLAAEKA 495

Query: 509 TPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVS 568
               N+        QE    + +F +M    I PN  T++ +++ CS    F+ A    S
Sbjct: 496 GQAKNS------GGQEMMCILGVFHKMHELEIKPNVVTFSAILNACSRCNSFEEA----S 545

Query: 569 MMVRDGFYPQTMTYTALIKILLDYGD--FDEALNLLDLVSLEGIPHDVLLYNTI 620
           M++ +        Y     +L+ Y +  +++A +L D V L         YN +
Sbjct: 546 MLLEELRLFDNQVYGVAHGLLMGYRENVWEQAQSLFDEVKLMDSSTASAFYNAL 599


>gi|414887034|tpg|DAA63048.1| TPA: crs2 associated factor1 [Zea mays]
          Length = 617

 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 89/371 (23%), Positives = 150/371 (40%), Gaps = 35/371 (9%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLG-LQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           + + +I A G       AE L L+    G ++P +  Y+  ++  V    L+N  +VL  
Sbjct: 265 AVTALISALGTAGRVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVRIASLKNAEQVLDE 324

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMD 409
           M Q  + P ++T + L    ++A   + A  LL ++      KP    FS  LA      
Sbjct: 325 MSQCGVAPDEATYSLLVDAYTRAGRWESARILLKEME-ADGVKPSSYVFSRILAGFRDRG 383

Query: 410 KPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
             ++A  +  +M+   +RPD   Y ++   FG  N      + F+++    R   IE D+
Sbjct: 384 DWQKAFAVLREMQASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFNKM----REEGIEPDV 439

Query: 469 AR-NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHR 527
              N +  +H          G      EL +   +S  P GT TYN +++ L E +    
Sbjct: 440 VTWNTLIDAHCKG-------GRHDRAAELFEEMRESNCPPGTTTYNIMINLLGEQEHWEG 492

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
              +  +MK  G+ PN  TY  ++D       +K A   +  M  DG  P    Y AL+ 
Sbjct: 493 VEAMLSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALV- 551

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
                          +  +  G+  DV+ Y T++K      + D +  I E+M  +   P
Sbjct: 552 ---------------NAYAQRGLRPDVITYTTLMKALIRVEQFDKVPVIYEEMITSGCAP 596

Query: 648 DPSTCHFVFSG 658
           D      + SG
Sbjct: 597 DRKARAMLRSG 607



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 68/288 (23%), Positives = 127/288 (44%), Gaps = 29/288 (10%)

Query: 398 FSAFLAAC-DTMDKPERAI--KIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFS 453
           +S  LA+  +T D P+ A+  ++   +R+ +L PD   +  L S F     P     + +
Sbjct: 193 YSHLLASLLNTRDPPDAALLERLLGDLRESRLEPDAPLFSDLISAFARAALPDAALELLA 252

Query: 454 QVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRE----LIQYFCDSKTPLGT 509
              SA+ I        R+N      ++  L+ ALG  G + E     +++F   +    T
Sbjct: 253 ---SAQAIGLTP----RSN------AVTALISALGTAGRVAEAEALFLEFFLAGEIKPRT 299

Query: 510 PTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSM 569
             YN +L   V       A ++  +M  CG+ P+ ATY++++D  +    ++SA  L+  
Sbjct: 300 RAYNALLKGYVRIASLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKE 359

Query: 570 MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTIL----KKAC 625
           M  DG  P +  ++ ++    D GD+ +A  +L  +   G+  D   YN ++    K  C
Sbjct: 360 MEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQASGVRPDRHFYNVMIDTFGKYNC 419

Query: 626 EKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
               +D       +M +  ++PD  T + +   +   G H+ A E  +
Sbjct: 420 LGHAMDA----FNKMREEGIEPDVVTWNTLIDAHCKGGRHDRAAELFE 463



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 89/399 (22%), Positives = 148/399 (37%), Gaps = 60/399 (15%)

Query: 270 GRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSH 329
           G LR SRL+   PL            FSD+I A  R      A +L+   Q++GL P S+
Sbjct: 217 GDLRESRLEPDAPL------------FSDLISAFARAALPDAALELLASAQAIGLTPRSN 264

Query: 330 TYDGFIRAI-VSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ 388
                I A+  + R        L+      +KP+      L     +   L  AE +LD+
Sbjct: 265 AVTALISALGTAGRVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVRIASLKNAEQVLDE 324

Query: 389 ISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEE 448
           +S+C                                + PD  TY LL      V+A    
Sbjct: 325 MSQC-------------------------------GVAPDEATYSLL------VDAYTRA 347

Query: 449 GNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLG 508
           G   S      RI   EM+   + ++ S      +L      G  ++      + +    
Sbjct: 348 GRWES-----ARILLKEMEA--DGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQASGV 400

Query: 509 TPT---YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASA 565
            P    YN ++ +  +      AM+ F +M+  GI P+  T+N +ID          A+ 
Sbjct: 401 RPDRHFYNVMIDTFGKYNCLGHAMDAFNKMREEGIEPDVVTWNTLIDAHCKGGRHDRAAE 460

Query: 566 LVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKAC 625
           L   M      P T TY  +I +L +   ++    +L  +  +G+  +++ Y T++    
Sbjct: 461 LFEEMRESNCPPGTTTYNIMINLLGEQEHWEGVEAMLSEMKEQGLVPNIITYTTLVDVYG 520

Query: 626 EKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGF 664
             GR       IE M  + ++P P+  H + + Y   G 
Sbjct: 521 RSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGL 559


>gi|297832604|ref|XP_002884184.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330024|gb|EFH60443.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 829

 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 79/330 (23%), Positives = 143/330 (43%), Gaps = 26/330 (7%)

Query: 378 ELDLAEALLDQI---SRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYE 433
           +  +A  LLD+I       + + ++  L A     K E+AI +F +M++    P + TY 
Sbjct: 197 QYSVAAKLLDKIPLQDYMLDVRAYTTILHAYSRTGKYEKAINLFERMKEMGPSPTLVTYN 256

Query: 434 LLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMI 493
           ++  +FG +   +            ++I  +  +M    ++    +   +L A   EG++
Sbjct: 257 VILDVFGKMGRSW------------RKILGVLEEMRSKGLKFDEFTCSTVLSACAREGLL 304

Query: 494 RELIQYFCDSKT---PLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIM 550
           RE   +F + K+     GT TYN +L    +A     A+ + K+M+    P ++ TYN +
Sbjct: 305 REAKDFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENNCPADSVTYNEL 364

Query: 551 IDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGI 610
           +   +     K A+ ++ MM + G  P  +TYT +I      G  DEAL L   +   G 
Sbjct: 365 VAAYARAGFSKEAAVVIEMMTQKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGC 424

Query: 611 PHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAME 670
             +   YN +L    +K R + +  ++  M  N   P+ +T + + +    CG  N  M+
Sbjct: 425 VPNTCTYNAVLSMLGKKSRSNEMIKMLCDMKSNGCFPNRATWNTILA---LCG--NKGMD 479

Query: 671 ALQVLSMRMLCEEVSTLEEKRSDFEDLILA 700
                  R +  +    E  R  F  LI A
Sbjct: 480 KFVNRVFREM--KSCGFEPDRDTFNTLISA 507



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 86/383 (22%), Positives = 151/383 (39%), Gaps = 30/383 (7%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVS-DRGLRNGMEVLKI 353
           +++ ++HA  RT     A  L  +M+ +G  P+  TY+  +       R  R  + VL+ 
Sbjct: 219 AYTTILHAYSRTGKYEKAINLFERMKEMGPSPTLVTYNVILDVFGKMGRSWRKILGVLEE 278

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRC---TNPKPFSAFLAACDTMDK 410
           M+   LK  + T +T+   C++   L  A+    ++  C        ++A L        
Sbjct: 279 MRSKGLKFDEFTCSTVLSACAREGLLREAKDFFAELKSCGYEPGTVTYNALLQVFGKAGV 338

Query: 411 PERAIKIFAKMRQKLRP-DIRTYELLFSLFGNVNAPYE----------EGNMFSQVDSAK 459
              A+ +  +M +   P D  TY  L + +       E          +G M + +    
Sbjct: 339 YTEALSVLKEMEENNCPADSVTYNELVAAYARAGFSKEAAVVIEMMTQKGVMPNAITYTT 398

Query: 460 RINAIEMDMARNNIQHSHISMKN------------LLKALGAEGMIRELIQYFCDSKTPL 507
            I+A       +       SMK             +L  LG +    E+I+  CD K+  
Sbjct: 399 VIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSMLGKKSRSNEMIKMLCDMKSNG 458

Query: 508 GTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSAS 564
             P   T+NT+L              +F++MK+CG  P+  T+N +I           AS
Sbjct: 459 CFPNRATWNTILALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDAS 518

Query: 565 ALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKA 624
            +   M R GF     TY AL+  L   GD+    N++  +  +G       Y+ +L+  
Sbjct: 519 KMYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCY 578

Query: 625 CEKGRIDVIEFIIEQMHQNKVQP 647
            + G    IE I E +++ ++ P
Sbjct: 579 AKGGNYLGIERIEEGINEGQIFP 601



 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 95/486 (19%), Positives = 189/486 (38%), Gaps = 63/486 (12%)

Query: 237 FTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSF 296
           F R++++  +   + + V L + GK+       GR     L +   + +   +K   ++ 
Sbjct: 240 FERMKEMGPSPTLVTYNVILDVFGKM-------GRSWRKILGVLEEMRS-KGLKFDEFTC 291

Query: 297 SDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQ 356
           S V+ AC R      A+    +++S G +P + TY+  ++           + VLK M++
Sbjct: 292 STVLSACAREGLLREAKDFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEE 351

Query: 357 NNLKPQDSTIATLSVECSKA---LELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPER 413
           NN      T   L    ++A    E  +   ++ Q     N   ++  + A     K + 
Sbjct: 352 NNCPADSVTYNELVAAYARAGFSKEAAVVIEMMTQKGVMPNAITYTTVIDAYGKAGKEDE 411

Query: 414 AIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNN 472
           A+K+F  M++    P+  TY  + S+ G  +   E   M               DM  N 
Sbjct: 412 ALKLFYSMKEAGCVPNTCTYNAVLSMLGKKSRSNEMIKMLC-------------DMKSNG 458

Query: 473 IQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAM 529
              +  +   +L   G +GM + + + F + K+    P   T+NT++ +         A 
Sbjct: 459 CFPNRATWNTILALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDAS 518

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
           +++ +M   G      TYN +++  +    ++S   ++S M   GF P   +Y+ +++  
Sbjct: 519 KMYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCY 578

Query: 590 LDYGDF------DEALN-----------------------------LLDLVSLEGIPHDV 614
              G++      +E +N                                L    G   D+
Sbjct: 579 AKGGNYLGIERIEEGINEGQIFPSWMLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDM 638

Query: 615 LLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQV 674
           +++N++L         D  E I++ +H++ + PD  T + +   YV  G    A E L+ 
Sbjct: 639 VIFNSMLSIFTRNNMYDQAEGILQSIHEDGLNPDLVTYNSLMDMYVRRGECWKAEEILKT 698

Query: 675 LSMRML 680
           L    L
Sbjct: 699 LEKSQL 704



 Score = 77.0 bits (188), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 117/588 (19%), Positives = 228/588 (38%), Gaps = 63/588 (10%)

Query: 120 LNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANL 179
           L+ + Y  ++ A  + G  E+A NL   + E  G  P L  YN  L    K+       L
Sbjct: 215 LDVRAYTTILHAYSRTGKYEKAINLFERMKE-MGPSPTLVTYNVILDVFGKMGRSWRKIL 273

Query: 180 -CLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFT 238
             L+ M S+ +  +E T + +L     +  L    +                      F 
Sbjct: 274 GVLEEMRSKGLKFDEFTCSTVLSACAREGLLREAKDF---------------------FA 312

Query: 239 RLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSD 298
            L+       T+ +   L + GK  +   +   L+       +  N  P   V   ++++
Sbjct: 313 ELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKE------MEENNCPADSV---TYNE 363

Query: 299 VIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNN 358
           ++ A  R   S  A  ++  M   G+ P++ TY   I A          +++   M++  
Sbjct: 364 LVAAYARAGFSKEAAVVIEMMTQKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAG 423

Query: 359 LKPQDSTI-ATLSVECSKALELDLAEALLDQISRCTNPK--PFSAFLAACDTMDKPERAI 415
             P   T  A LS+   K+   ++ + L D  S    P    ++  LA C      +   
Sbjct: 424 CVPNTCTYNAVLSMLGKKSRSNEMIKMLCDMKSNGCFPNRATWNTILALCGNKGMDKFVN 483

Query: 416 KIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSA------KRINAIEMDM 468
           ++F +M+     PD  T+  L S +G   +  +   M+ ++  A         NA+   +
Sbjct: 484 RVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNAL 543

Query: 469 ARNNIQHSHISMKNLLKALG---AEGMIRELIQYFCDSKTPLGT-------------PTY 512
           AR     S  ++ + +K+ G    E     ++Q +      LG              P++
Sbjct: 544 ARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIEEGINEGQIFPSW 603

Query: 513 NTVLHSLVEAQESHRAM----EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVS 568
             +L +L+ A    RA+      F   K  G  P+   +N M+   +    +  A  ++ 
Sbjct: 604 -MLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILQ 662

Query: 569 MMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
            +  DG  P  +TY +L+ + +  G+  +A  +L  +    +  D++ YNT++K  C KG
Sbjct: 663 SIHEDGLNPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCRKG 722

Query: 629 RIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
            +     ++ +M +  ++P   T +   SGY   G +    + ++ ++
Sbjct: 723 LMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGMYGEIEDVIECMA 770



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 84/409 (20%), Positives = 152/409 (37%), Gaps = 37/409 (9%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ VI A G+      A +L   M+  G  P++ TY+  +  +         +++L  M
Sbjct: 395 TYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSMLGKKSRSNEMIKMLCDM 454

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRC---TNPKPFSAFLAACDTMDKP 411
           + N   P  +T  T+   C           +  ++  C    +   F+  ++A       
Sbjct: 455 KSNGCFPNRATWNTILALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSE 514

Query: 412 ERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAK----------- 459
             A K++ +M R      + TY  L +            N+ S + S             
Sbjct: 515 VDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLM 574

Query: 460 -----------RINAIEMDMARNNIQHSHISMKNLL----KALGAEGMIRELIQYFCDSK 504
                       I  IE  +    I  S + ++ LL    K     G  R    +     
Sbjct: 575 LQCYAKGGNYLGIERIEEGINEGQIFPSWMLLRTLLLANFKCRALAGSERAFTLFKKHGY 634

Query: 505 TPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIR---CFK 561
            P     +N++L          +A  I + +   G+ P+  TYN ++D    +R   C+K
Sbjct: 635 KP-DMVIFNSMLSIFTRNNMYDQAEGILQSIHEDGLNPDLVTYNSLMDM--YVRRGECWK 691

Query: 562 SASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTIL 621
            A  ++  + +    P  ++Y  +IK     G   EA+ +L  ++  GI   +  YNT +
Sbjct: 692 -AEEILKTLEKSQLKPDLVSYNTVIKGFCRKGLMQEAVRMLSEMTERGIRPCIFTYNTFV 750

Query: 622 KKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAME 670
                 G    IE +IE M +N  +P+  T   V  GY   G ++ AM+
Sbjct: 751 SGYTAMGMYGEIEDVIECMAKNDCRPNELTFKMVVDGYCRAGKYSEAMD 799



 Score = 60.5 bits (145), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 61/320 (19%), Positives = 130/320 (40%), Gaps = 20/320 (6%)

Query: 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
           R +F+ +I A GR  +   A ++  +M   G      TY+  + A+      R+G  V+ 
Sbjct: 498 RDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVIS 557

Query: 353 IMQQNNLKPQDSTIATLSVEC----SKALELDLAEALLDQISRCTNPKPFSAFLAA---C 405
            M+    KP +++  +L ++C       L ++  E  +++     +       L A   C
Sbjct: 558 DMKSKGFKPTETSY-SLMLQCYAKGGNYLGIERIEEGINEGQIFPSWMLLRTLLLANFKC 616

Query: 406 DTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIE 465
             +   ERA  +F K     +PD+  +  + S+F          NM+ Q +    + +I 
Sbjct: 617 RALAGSERAFTLFKK--HGYKPDMVIFNSMLSIF-------TRNNMYDQAEGI--LQSIH 665

Query: 466 MDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQES 525
            D    ++  ++ S+ ++    G      E+++    S+      +YNTV+         
Sbjct: 666 EDGLNPDLV-TYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCRKGLM 724

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
             A+ +  +M   GI P   TYN  +   + +  +     ++  M ++   P  +T+  +
Sbjct: 725 QEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGMYGEIEDVIECMAKNDCRPNELTFKMV 784

Query: 586 IKILLDYGDFDEALNLLDLV 605
           +      G + EA++ +  +
Sbjct: 785 VDGYCRAGKYSEAMDFVSKI 804


>gi|218191860|gb|EEC74287.1| hypothetical protein OsI_09537 [Oryza sativa Indica Group]
          Length = 689

 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 117/262 (44%), Gaps = 11/262 (4%)

Query: 410 KPERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
           +P  A+++F  MR +++ PD      L +             +F Q+  A     + M+ 
Sbjct: 217 RPHDALRVFDHMRAREVVPDAHASSALLTALAKSRMTATARKVFDQMTRA----GVAMN- 271

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRA 528
                 H + +M ++    G   +   L+     +  PL   ++NTV+         + A
Sbjct: 272 -----THVYNAMLHVCLKAGDAALAESLMTRMDAAGVPLDRFSFNTVIALYCRKGMQYEA 326

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
           M + ++M+  G+  +  T+N +I      R  K AS L+  M   G  P  +TYT L+  
Sbjct: 327 MCVRERMENQGVKADVVTWNSLIHGLCKERRVKEASQLLREMAMAGVAPDHVTYTTLVDG 386

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
               GD +EA+ L   +   G+   V  YN IL+K CE G++  +  ++ +M + KVQ D
Sbjct: 387 YCRAGDLEEAVKLRGEMEAMGMLPGVATYNAILRKLCEDGKMKEVNVLLNEMDERKVQAD 446

Query: 649 PSTCHFVFSGYVNCGFHNSAME 670
             TC+ + + Y   G   SA++
Sbjct: 447 HVTCNTLINAYCKRGDMTSALK 468



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 88/416 (21%), Positives = 173/416 (41%), Gaps = 32/416 (7%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLR-NGMEVLKIM 354
           ++ ++H C +  ++ LAE LM +M + G+     +++  I A+   +G++   M V + M
Sbjct: 275 YNAMLHVCLKAGDAALAESLMTRMDAAGVPLDRFSFNTVI-ALYCRKGMQYEAMCVRERM 333

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKP--- 411
           +   +K    T  +L     K   +  A  LL +++          +    D   +    
Sbjct: 334 ENQGVKADVVTWNSLIHGLCKERRVKEASQLLREMAMAGVAPDHVTYTTLVDGYCRAGDL 393

Query: 412 ERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           E A+K+  +M    + P + TY  +           E+G M       K +N +  +M  
Sbjct: 394 EEAVKLRGEMEAMGMLPGVATYNAILRKL------CEDGKM-------KEVNVLLNEMDE 440

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQY---FCDSKTPLGTPTYNTVLHSLVEAQESHR 527
             +Q  H++   L+ A    G +   ++      +S   L   TY  ++H   +A+E   
Sbjct: 441 RKVQADHVTCNTLINAYCKRGDMTSALKVKRRMMESGLQLDQFTYKALVHGFCKAKELDE 500

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A E   +M   G  PN +  + ++D         +  A+   +++ GF P    Y +LI+
Sbjct: 501 AKEALFEMMGAGFSPNYSVLSWIVDGLCNKNNAVAVLAIPDELMKRGFPPDKAVYRSLIR 560

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
            L   G  D A N+ + +  +G+  D L+Y T+       G+      I+ +M + ++  
Sbjct: 561 RLCKKGFIDLAGNVFNEMQGKGLEADCLVYATLACAYLTAGKPVAALDILNEMAKKQLYI 620

Query: 648 DPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEK----RSDFEDLIL 699
            P     +++   +C F    +  LQ  + +  C++  T E +    R D+E L L
Sbjct: 621 TPQ----IYNYKSSCKFAGDGV--LQFQTKQCRCDQKKTWEGRSGCSRLDYEFLRL 670



 Score = 55.1 bits (131), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 61/138 (44%)

Query: 521 EAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTM 580
           ++   H A+ +F  M+   + P+A   + ++   +  R   +A  +   M R G    T 
Sbjct: 214 QSARPHDALRVFDHMRAREVVPDAHASSALLTALAKSRMTATARKVFDQMTRAGVAMNTH 273

Query: 581 TYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQM 640
            Y A++ + L  GD   A +L+  +   G+P D   +NT++   C KG       + E+M
Sbjct: 274 VYNAMLHVCLKAGDAALAESLMTRMDAAGVPLDRFSFNTVIALYCRKGMQYEAMCVRERM 333

Query: 641 HQNKVQPDPSTCHFVFSG 658
               V+ D  T + +  G
Sbjct: 334 ENQGVKADVVTWNSLIHG 351



 Score = 47.8 bits (112), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 71/406 (17%), Positives = 143/406 (35%), Gaps = 57/406 (14%)

Query: 318 QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKAL 377
            M++  + P +H     + A+   R      +V   M +  +         +   C KA 
Sbjct: 227 HMRAREVVPDAHASSALLTALAKSRMTATARKVFDQMTRAGVAMNTHVYNAMLHVCLKAG 286

Query: 378 ELDLAEALLDQISRCTNPK---PFSAFLAACDTMDKPERAIKIFAKMR-QKLRPDIRTYE 433
           +  LAE+L+ ++     P     F+  +A          A+ +  +M  Q ++ D+ T+ 
Sbjct: 287 DAALAESLMTRMDAAGVPLDRFSFNTVIALYCRKGMQYEAMCVRERMENQGVKADVVTWN 346

Query: 434 LLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMI 493
            L              +   +    K  + +  +MA   +   H++   L+      G +
Sbjct: 347 SLI-------------HGLCKERRVKEASQLLREMAMAGVAPDHVTYTTLVDGYCRAGDL 393

Query: 494 RELIQYFCDSKT----PLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNI 549
            E ++   + +     P G  TYN +L  L E  +      +  +M    +  +  T N 
Sbjct: 394 EEAVKLRGEMEAMGMLP-GVATYNAILRKLCEDGKMKEVNVLLNEMDERKVQADHVTCNT 452

Query: 550 MIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEA----------- 598
           +I+         SA  +   M+  G      TY AL+       + DEA           
Sbjct: 453 LINAYCKRGDMTSALKVKRRMMESGLQLDQFTYKALVHGFCKAKELDEAKEALFEMMGAG 512

Query: 599 ------------------------LNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIE 634
                                   L + D +   G P D  +Y +++++ C+KG ID+  
Sbjct: 513 FSPNYSVLSWIVDGLCNKNNAVAVLAIPDELMKRGFPPDKAVYRSLIRRLCKKGFIDLAG 572

Query: 635 FIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRML 680
            +  +M    ++ D      +   Y+  G   +A++ L  ++ + L
Sbjct: 573 NVFNEMQGKGLEADCLVYATLACAYLTAGKPVAALDILNEMAKKQL 618



 Score = 44.3 bits (103), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 35/146 (23%), Positives = 65/146 (44%), Gaps = 2/146 (1%)

Query: 111 RMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAK 170
           R M    +  ++  Y  ++   C+ G LEEA  L   + E  G+ P +  YN+ L    +
Sbjct: 366 REMAMAGVAPDHVTYTTLVDGYCRAGDLEEAVKLRGEM-EAMGMLPGVATYNAILRKLCE 424

Query: 171 LHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH-YSLSIFS 229
              M   N+ L+ MD R V  + VT   L+     + ++++  ++    ++    L  F+
Sbjct: 425 DGKMKEVNVLLNEMDERKVQADHVTCNTLINAYCKRGDMTSALKVKRRMMESGLQLDQFT 484

Query: 230 LRKFVWSFTRLRDLKSAYETLQHMVA 255
            +  V  F + ++L  A E L  M+ 
Sbjct: 485 YKALVHGFCKAKELDEAKEALFEMMG 510


>gi|359492658|ref|XP_002281859.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g19290-like [Vitis vinifera]
          Length = 939

 Score = 93.6 bits (231), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 110/532 (20%), Positives = 216/532 (40%), Gaps = 35/532 (6%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y  ++   C+ G+  EA NL   + +  GI P +  YN+ L    ++ +   A     LM
Sbjct: 405 YNTLLDGYCREGHTSEAFNLCDKMLQE-GIEPTVLTYNTLLKGLCRVGAFDDALQIWHLM 463

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYSLSIFSLRKFVWSFTRLRDL 243
             R V  +EV Y+ LL      +N      +W+D + + ++ S  +    +    ++  +
Sbjct: 464 MKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKM 523

Query: 244 KSAYETLQHMVALAMMGKLYINRT-SEGRLRSSRLDIPIPLNAL----PVMKVLRWSFSD 298
             A E    M  L         RT  +G  ++S +     +       P+   +   ++ 
Sbjct: 524 VEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREPISPSIEM-YNS 582

Query: 299 VIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTY----DGFIRAIVSDRGLRNGMEVLKIM 354
           +I    +++       L+ +M   GL P+  TY    DG+ +  + D+   +  E    M
Sbjct: 583 LISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFE----M 638

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERA 414
            +N L       +T+     +   +D A  L+ ++           F    +   K +  
Sbjct: 639 TENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVD-------HGFFPDHECFLKSDIR 691

Query: 415 IKIFAKMRQKLRPDIRTYELLFSLFGNVNAPY--EEGNMFSQVDSAKRINAIEMDMARNN 472
                K+   L    +T+ L  ++  N+      + G    +VD A+R  ++   ++   
Sbjct: 692 YAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTG----KVDDARRFFSM---LSLKG 744

Query: 473 IQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAM 529
               + +   L+    A G + E  +   +       P   TYN +++ L +++   RA 
Sbjct: 745 FVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQ 804

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
            +F ++   G+ PN  TYN +ID    I    +A  L   M+ +G  P  +TY+ALI  L
Sbjct: 805 RLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEEGISPSVVTYSALINGL 864

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMH 641
             +GD + ++ LL+ +   G+   ++ Y T+++     G +  I  + + MH
Sbjct: 865 CKHGDIERSMKLLNQMIKAGVDSKLIEYCTLVQGYIRSGEMQKIHKLYDMMH 916



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 130/631 (20%), Positives = 240/631 (38%), Gaps = 82/631 (12%)

Query: 127 LMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDS 186
           +M+ A CK G ++EA+  +  + E  G+ P +  Y+S +     L  +  A   L  M  
Sbjct: 231 IMVNAFCKDGKVDEAAGFVKKM-ENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSE 289

Query: 187 RMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKF---VWSFTRLRDL 243
           + V +N VTYT L+K    Q  +    ++     +  +L +   R +   +  + R   +
Sbjct: 290 KGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAAL-VPDERAYGVLIDGYCRTGKI 348

Query: 244 KSAYETLQHMVALAMMGKLYI-NRTSEGRLRSSRLDIPIPLNALPV---MKVLRWSFSDV 299
             A   L  M+ L +   L+I N    G  +   +     +    V   +K   +S++ +
Sbjct: 349 DDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTL 408

Query: 300 IHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNL 359
           +    R  ++  A  L  +M   G++P+  TY+  ++ +       + +++  +M +  +
Sbjct: 409 LDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRGV 468

Query: 360 KPQDSTIATLSVECSKALELDLAEALLDQI-------SRCTNPKPFSAFLAACDTMDKPE 412
            P +   +TL     K    + A  L   I       SR T    F+  ++    M K  
Sbjct: 469 APDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRIT----FNTMISGLCKMGKMV 524

Query: 413 RAIKIFAKMRQ-KLRPDIRTYELLFSLF---GNVNAPYE-EGNM---------------F 452
            A +IF KM+     PD  TY  L   +    NV   ++ +G M                
Sbjct: 525 EAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREPISPSIEMYNSLI 584

Query: 453 SQVDSAKRINAIE---MDMARNNIQHSHISMKNLLKALGAEGMI-RELIQYFCDSKTPLG 508
           S +  ++R+  +     +M    +  + ++   L+     EGM+ +    YF  ++  L 
Sbjct: 585 SGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLS 644

Query: 509 TPTY--NTVLHSLVEAQESHRAMEIFKQMKTCGIPP------------------------ 542
                 +T++  L        A  + ++M   G  P                        
Sbjct: 645 ANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPDHECFLKSDIRYAAIQKIADSLDE 704

Query: 543 --------NAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGD 594
                   N   YNI I           A    SM+   GF P   TY  LI      G+
Sbjct: 705 SCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGN 764

Query: 595 FDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHF 654
            DEA  L D +   G+  +++ YN ++   C+   +D  + +  ++HQ  + P+  T + 
Sbjct: 765 VDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNT 824

Query: 655 VFSGYVNCGFHNSAMEALQVLSMRMLCEEVS 685
           +  GY   G     M+A   L  +M+ E +S
Sbjct: 825 LIDGYCKIG----NMDAAFKLKDKMIEEGIS 851



 Score = 58.9 bits (141), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 119/582 (20%), Positives = 210/582 (36%), Gaps = 75/582 (12%)

Query: 111 RMMEEK-EIGLNNKCYLL--MMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFL-G 166
           R+++E   +GL    ++   ++   CK G + EA  +I  + + + + P    YN+ L G
Sbjct: 353 RLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVD-WNLKPDSYSYNTLLDG 411

Query: 167 ACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWE--------- 217
            C + H+    NLC D M    +    +TY  LLK            +IW          
Sbjct: 412 YCREGHTSEAFNLC-DKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRGVAP 470

Query: 218 DYIKHYSL--SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSS 275
           D + + +L   +F +  F  + T  +D+                        + G  +S 
Sbjct: 471 DEVGYSTLLDGLFKMENFEGASTLWKDI-----------------------LARGFTKS- 506

Query: 276 RLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFI 335
                            R +F+ +I    +      AE++  +M+ LG  P   TY   I
Sbjct: 507 -----------------RITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLI 549

Query: 336 RAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQIS-RCTN 394
                   +    +V   M++  + P      +L     K+  L     LL ++  R   
Sbjct: 550 DGYCKASNVGQAFKVKGAMEREPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLT 609

Query: 395 PKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQ 454
           P     + A  D   K     K F+   +     +    ++ S    V+  Y  G    +
Sbjct: 610 PN-IVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTM--VSGLYRLG----R 662

Query: 455 VDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---T 511
           +D A   N +   M  +     H   +  LK+      I+++     +S      P    
Sbjct: 663 IDEA---NLLMQKMVDHGFFPDH---ECFLKSDIRYAAIQKIADSLDESCKTFLLPNNIV 716

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           YN  +  L +  +   A   F  +   G  P+  TY  +I   S       A  L   M+
Sbjct: 717 YNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEML 776

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
           R G  P  +TY ALI  L    + D A  L   +  +G+  +V+ YNT++   C+ G +D
Sbjct: 777 RRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMD 836

Query: 632 VIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
               + ++M +  + P   T   + +G    G    +M+ L 
Sbjct: 837 AAFKLKDKMIEEGISPSVVTYSALINGLCKHGDIERSMKLLN 878



 Score = 48.1 bits (113), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 38/180 (21%), Positives = 78/180 (43%), Gaps = 38/180 (21%)

Query: 509 TPT-YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALV 567
           +PT ++ +L   VE   +  A+ +F  M  CG  P+                 +S ++L+
Sbjct: 155 SPTVFDMILKVYVEKGLTKNALYVFDNMGKCGRIPS----------------LRSCNSLL 198

Query: 568 SMMVRDG-FYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE 626
           + +V++G  +     Y  +I++                    GI  DV + + ++   C+
Sbjct: 199 NNLVKNGETHTAHYVYQQMIRV--------------------GIVPDVFMVSIMVNAFCK 238

Query: 627 KGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
            G++D     +++M    V+P+  T H + +GYV+ G   +A   L+ +S + +   V T
Sbjct: 239 DGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVT 298


>gi|297832318|ref|XP_002884041.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297329881|gb|EFH60300.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 874

 Score = 93.6 bits (231), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 88/395 (22%), Positives = 169/395 (42%), Gaps = 16/395 (4%)

Query: 286 LPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLR 345
            P  K   + ++ ++ +C R +       L   M   G+ P ++T++  IRA+     + 
Sbjct: 105 FPENKPGIYLYNVLLESCIRERRVEFVSWLYKDMVLCGISPETYTFNLLIRALCDSSCVD 164

Query: 346 NGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFL 402
              E+   M +   KP + T   L     KA   D    LL+ +       N   ++  +
Sbjct: 165 AARELFDEMPEKGCKPNEFTFGILVRGYCKAGLTDKGLELLNSMESFGVLPNKVVYNTIV 224

Query: 403 AACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI 461
           ++     + + + K+  KMR++ L PDI T+         ++A  +EG +   +D+++  
Sbjct: 225 SSFCREGRNDDSEKLVEKMREEGLVPDIVTFN------SRISALCKEGKV---LDASRIF 275

Query: 462 NAIEMDMARNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHS 518
           + +E+D      + + I+   +LK     G++ +   L +   ++   +   +YN  L  
Sbjct: 276 SDMELDEYLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFESIRENDDLVSLQSYNIWLQG 335

Query: 519 LVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQ 578
           LV   +   A  + KQM   GI P+  +YNI++D    +     A  +V +M R+G  P 
Sbjct: 336 LVRHGKFIEAETVLKQMIDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVSPD 395

Query: 579 TMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIE 638
            +TY  L+      G  D A +LL  +       +    N +L      GRI   E ++ 
Sbjct: 396 AVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWNMGRISEAEELLR 455

Query: 639 QMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           +M++     D  TC+ +  G    G  + A+E ++
Sbjct: 456 KMNEKGYGLDTVTCNIIVDGLCGSGELDKAIEIVK 490



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 3/155 (1%)

Query: 500 FCDSKTPLGTPT---YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSI 556
           F  S+ P   P    YN +L S +  +       ++K M  CGI P   T+N++I     
Sbjct: 100 FVRSRFPENKPGIYLYNVLLESCIRERRVEFVSWLYKDMVLCGISPETYTFNLLIRALCD 159

Query: 557 IRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLL 616
             C  +A  L   M   G  P   T+  L++     G  D+ L LL+ +   G+  + ++
Sbjct: 160 SSCVDAARELFDEMPEKGCKPNEFTFGILVRGYCKAGLTDKGLELLNSMESFGVLPNKVV 219

Query: 617 YNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
           YNTI+   C +GR D  E ++E+M +  + PD  T
Sbjct: 220 YNTIVSSFCREGRNDDSEKLVEKMREEGLVPDIVT 254



 Score = 69.7 bits (169), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 77/367 (20%), Positives = 156/367 (42%), Gaps = 26/367 (7%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           AE ++ QM   G+ PS ++Y+  +  +     L +   ++ +M++N + P   T   L  
Sbjct: 345 AETVLKQMIDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVSPDAVTYGCLLH 404

Query: 372 ECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRP 427
                 ++D A++LL ++ R     N    +  L +   M +   A ++  KM +K    
Sbjct: 405 GYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWNMGRISEAEELLRKMNEKGYGL 464

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL 487
           D  T  ++      V+     G +   ++  K +  +    A  N+ +S+I + +   +L
Sbjct: 465 DTVTCNII------VDGLCGSGELDKAIEIVKGMR-VHGSAALGNLGNSYIGLVD--DSL 515

Query: 488 GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATY 547
                + +LI             TY+T+L+ L +A     A  +F +M    + P++  Y
Sbjct: 516 IENNCLPDLI-------------TYSTLLNGLCKAGRFAEAKTLFAEMMGEKLQPDSLAY 562

Query: 548 NIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSL 607
           NI I          SA  ++  M + G +    TY +LI  L       E   L+D +  
Sbjct: 563 NIFIHHFCKQGKISSAFRVLKDMEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEMRE 622

Query: 608 EGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNS 667
           +GI  ++  YNT ++  CE G+++    ++++M Q  + P+  +  ++   +      + 
Sbjct: 623 KGISPNICTYNTAIQYLCEGGKVEDATNLLDEMMQKNIAPNVFSFKYLIGAFCKVPDFDM 682

Query: 668 AMEALQV 674
           A E  + 
Sbjct: 683 AQEVFET 689



 Score = 67.0 bits (162), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 79/362 (21%), Positives = 153/362 (42%), Gaps = 32/362 (8%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYD----GFIRAIVSDRGLRNGME 349
           ++F+ +I A   +     A +L  +M   G +P+  T+     G+ +A ++D+GL    E
Sbjct: 148 YTFNLLIRALCDSSCVDAARELFDEMPEKGCKPNEFTFGILVRGYCKAGLTDKGL----E 203

Query: 350 VLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACD 406
           +L  M+   + P      T+     +    D +E L++++       +   F++ ++A  
Sbjct: 204 LLNSMESFGVLPNKVVYNTIVSSFCREGRNDDSEKLVEKMREEGLVPDIVTFNSRISALC 263

Query: 407 TMDKPERAIKIFAKMRQK-----LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI 461
              K   A +IF+ M         RP+  TY L+   F  V    +   +F  +     +
Sbjct: 264 KEGKVLDASRIFSDMELDEYLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFESIRENDDL 323

Query: 462 NAIEMDMARNNIQHSHISMKNLL---KALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHS 518
            ++         Q  +I ++ L+   K + AE +++++I    D        +YN ++  
Sbjct: 324 VSL---------QSYNIWLQGLVRHGKFIEAETVLKQMI----DKGIGPSIYSYNILMDG 370

Query: 519 LVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQ 578
           L +      A  I   MK  G+ P+A TY  ++     +    +A +L+  M+R+   P 
Sbjct: 371 LCKLGMLSDAKTIVGLMKRNGVSPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPN 430

Query: 579 TMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIE 638
             T   L+  L + G   EA  LL  ++ +G   D +  N I+   C  G +D    I++
Sbjct: 431 AYTCNILLHSLWNMGRISEAEELLRKMNEKGYGLDTVTCNIIVDGLCGSGELDKAIEIVK 490

Query: 639 QM 640
            M
Sbjct: 491 GM 492



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 117/585 (20%), Positives = 221/585 (37%), Gaps = 71/585 (12%)

Query: 121 NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLC 180
           N+  Y LM++  CK G LE+A  L   + E   +   L  YN +L    +    + A   
Sbjct: 290 NSITYNLMLKGFCKVGLLEDAKTLFESIRENDDLVS-LQSYNIWLQGLVRHGKFIEAETV 348

Query: 181 LDLMDSRMVGKNEVTYTELL----KLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWS 236
           L  M  + +G +  +Y  L+    KL +     + V  +  + +   +++   L   +  
Sbjct: 349 LKQMIDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVSPDAVTYGCL---LHG 405

Query: 237 FTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSF 296
           +  +  + +A   LQ M                  +R+         N LP      ++ 
Sbjct: 406 YCSVGKVDAAKSLLQEM------------------MRN---------NCLPNA----YTC 434

Query: 297 SDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQ 356
           + ++H+         AE+L+ +M   G    + T +  +  +     L   +E++K M+ 
Sbjct: 435 NILLHSLWNMGRISEAEELLRKMNEKGYGLDTVTCNIIVDGLCGSGELDKAIEIVKGMRV 494

Query: 357 NNLKPQDSTIATLSVECSKALELDLAE--ALLDQISRCTNPKPFSAFLAACDTMDKPERA 414
           +      + +  L       ++  L E   L D I+       +S  L       +   A
Sbjct: 495 HG----SAALGNLGNSYIGLVDDSLIENNCLPDLIT-------YSTLLNGLCKAGRFAEA 543

Query: 415 IKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNI 473
             +FA+M  +KL+PD   Y +    F       ++G    ++ SA R+     DM +   
Sbjct: 544 KTLFAEMMGEKLQPDSLAYNIFIHHF------CKQG----KISSAFRVLK---DMEKKGC 590

Query: 474 QHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAME 530
             S  +  +L+  LG +  I E+     + +    +P   TYNT +  L E  +   A  
Sbjct: 591 HKSLETYNSLILGLGIKNQIFEIHGLMDEMREKGISPNICTYNTAIQYLCEGGKVEDATN 650

Query: 531 IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590
           +  +M    I PN  ++  +I     +  F  A  +    V      + + Y+ +   LL
Sbjct: 651 LLDEMMQKNIAPNVFSFKYLIGAFCKVPDFDMAQEVFETAVSICGQKEGL-YSLMFNELL 709

Query: 591 DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650
             G   +A  LL+ V   G      LY  ++   C+K  ++V   I+ +M       DP+
Sbjct: 710 AAGQLLKATELLEAVLDRGFELGTFLYKDLVVSLCKKDELEVASGILHKMIDKGYGFDPA 769

Query: 651 TCHFVFSGYVNCGFHNSAME-ALQVLSMRMLCEEVSTLEEKRSDF 694
               V  G    G    A   A +++ M  + E  + ++   +D 
Sbjct: 770 ALMPVIDGLGKMGNKKEANNFAEKMMEMASVGEVANKVDPNATDI 814



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 101/452 (22%), Positives = 177/452 (39%), Gaps = 49/452 (10%)

Query: 111 RMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFL-GACA 169
           + M +K IG +   Y ++M  LCK G L +A  ++  + +R G+ P    Y   L G C+
Sbjct: 350 KQMIDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLM-KRNGVSPDAVTYGCLLHGYCS 408

Query: 170 KLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKN-LSAVHEIWEDYI-KHYSLSI 227
                   +L  ++M +  +  N  T   LL  ++W    +S   E+      K Y L  
Sbjct: 409 VGKVDAAKSLLQEMMRNNCL-PNAYTCNILLH-SLWNMGRISEAEELLRKMNEKGYGLDT 466

Query: 228 FSLRKFVWSFTRLRDLKSAYETLQHM-----VALAMMGKLYINRTSEGRLRSSRLDIPIP 282
            +    V       +L  A E ++ M      AL  +G  YI    +  + +        
Sbjct: 467 VTCNIIVDGLCGSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLVDDSLIEN-------- 518

Query: 283 LNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDR 342
            N LP +     ++S +++   +      A+ L  +M    LQP S  Y+ FI       
Sbjct: 519 -NCLPDL----ITYSTLLNGLCKAGRFAEAKTLFAEMMGEKLQPDSLAYNIFIHHFCKQG 573

Query: 343 GLRNGMEVLKIMQQ----NNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPF 398
            + +   VLK M++     +L+  +S I  L ++ ++  E+     L+D++         
Sbjct: 574 KISSAFRVLKDMEKKGCHKSLETYNSLILGLGIK-NQIFEI---HGLMDEMREKGISPNI 629

Query: 399 SAFLAACDTM---DKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQ 454
             +  A   +    K E A  +  +M QK + P++ +++ L   F  V            
Sbjct: 630 CTYNTAIQYLCEGGKVEDATNLLDEMMQKNIAPNVFSFKYLIGAFCKV----------PD 679

Query: 455 VDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNT 514
            D A+ +    + +     +  +  M N L A G      EL++   D    LGT  Y  
Sbjct: 680 FDMAQEVFETAVSICGQK-EGLYSLMFNELLAAGQLLKATELLEAVLDRGFELGTFLYKD 738

Query: 515 VLHSLVEAQESHRAMEIFKQM--KTCGIPPNA 544
           ++ SL +  E   A  I  +M  K  G  P A
Sbjct: 739 LVVSLCKKDELEVASGILHKMIDKGYGFDPAA 770


>gi|297793055|ref|XP_002864412.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310247|gb|EFH40671.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1245

 Score = 93.6 bits (231), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 118/576 (20%), Positives = 229/576 (39%), Gaps = 53/576 (9%)

Query: 106 VMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFL 165
           +M T+R+        N   + ++++   + G ++++  +   +G  YG  P +   N+ L
Sbjct: 112 LMATYRLCNS-----NPSVFDILIRVYLREGMIQDSLEIFRLMG-LYGFNPSVYTCNAIL 165

Query: 166 GACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH-YS 224
           G+  K    V     L  M  R +  +  T+  L+ +   + +      + +   K  Y+
Sbjct: 166 GSIVKSCEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFKKSSYLMQKMEKSGYA 225

Query: 225 LSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYI-----------NRTSEGRL- 272
            +I +    +  + +    K+A E L HM    +   +             NR+++G L 
Sbjct: 226 PTIVTYNTVLHWYCKKGRFKAAIELLDHMNLKGVNADVCTYNMLIHDLCRSNRSAKGYLL 285

Query: 273 -RSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTY 331
            R  R  +  P            +++ +++         +A QL+ +M + GL P+  T+
Sbjct: 286 LRDMRKRMIHPNEV---------TYNTLLNGFSNEGKVLIARQLLNEMLTFGLSPNHVTF 336

Query: 332 DGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR 391
           +  I   +S+   +  +++  +M+   L   + +   L     K  E DLA     ++ R
Sbjct: 337 NALIDGHISEGNFKEALKMFHMMEAKGLIGTEVSYGVLLDGLCKNAEFDLARGFYMRMKR 396

Query: 392 ---CTNPKPFSAFL-AACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYE 447
              C     ++  +   C      E  + +    +  + PDI TY  L            
Sbjct: 397 NGVCVGRITYTGMIDGLCKNGFLDEAVVMLNEMSKDGIDPDIVTYSALI----------- 445

Query: 448 EGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPL 507
             N F +V   K    I   + R  +  + I    L+      G ++E I+ +       
Sbjct: 446 --NGFCRVGRLKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKETIRIYEAMILEG 503

Query: 508 GTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSAS 564
            TP   T+N ++ SL +A +   A E  + M + GI PNA +++ +I+          A 
Sbjct: 504 NTPDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNAVSFDCLINGYGSSGEGLKAF 563

Query: 565 ALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPH--DVLLYNTILK 622
           ++   M + G +P   TY +L+K L   G    A   L   SL+ +P   D ++ NT++ 
Sbjct: 564 SVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLIAAEKFLK--SLQNVPAAVDTVMCNTLIT 621

Query: 623 KACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
             C+ G +D    +  +M Q  + PD  T   + SG
Sbjct: 622 AMCKSGNLDKAVSLFGEMVQRSILPDSFTYTSLISG 657



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 103/228 (45%), Gaps = 14/228 (6%)

Query: 483 LLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCG 539
           L++    EGMI++ ++ F         P   T N +L S+V++ E        K+M    
Sbjct: 129 LIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSIVKSCEDVSVWSFLKEMLKRK 188

Query: 540 IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEAL 599
           I P+ AT+NI+I+       FK +S L+  M + G+ P  +TY  ++      G F  A+
Sbjct: 189 ICPDVATFNILINVLCAEGSFKKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAI 248

Query: 600 NLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
            LLD ++L+G+  DV  YN ++   C   R      ++  M +  + P+  T + + +G+
Sbjct: 249 ELLDHMNLKGVNADVCTYNMLIHDLCRSNRSAKGYLLLRDMRKRMIHPNEVTYNTLLNGF 308

Query: 660 VNCGFHNSAMEALQVLSMRMLCEEVST--LEEKRSDFEDLILAEDSEA 705
            N G         +VL  R L  E+ T  L      F  LI    SE 
Sbjct: 309 SNEG---------KVLIARQLLNEMLTFGLSPNHVTFNALIDGHISEG 347



 Score = 67.0 bits (162), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 58/259 (22%), Positives = 111/259 (42%), Gaps = 16/259 (6%)

Query: 421 MRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISM 480
           +++K+ PD+ T+ +L      +N    EG       S K+ + +   M ++    + ++ 
Sbjct: 185 LKRKICPDVATFNIL------INVLCAEG-------SFKKSSYLMQKMEKSGYAPTIVTY 231

Query: 481 KNLLKALGAEGMIR---ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKT 537
             +L     +G  +   EL+ +           TYN ++H L  +  S +   + + M+ 
Sbjct: 232 NTVLHWYCKKGRFKAAIELLDHMNLKGVNADVCTYNMLIHDLCRSNRSAKGYLLLRDMRK 291

Query: 538 CGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDE 597
             I PN  TYN +++  S       A  L++ M+  G  P  +T+ ALI   +  G+F E
Sbjct: 292 RMIHPNEVTYNTLLNGFSNEGKVLIARQLLNEMLTFGLSPNHVTFNALIDGHISEGNFKE 351

Query: 598 ALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFS 657
           AL +  ++  +G+    + Y  +L   C+    D+      +M +N V     T   +  
Sbjct: 352 ALKMFHMMEAKGLIGTEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMID 411

Query: 658 GYVNCGFHNSAMEALQVLS 676
           G    GF + A+  L  +S
Sbjct: 412 GLCKNGFLDEAVVMLNEMS 430



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 71/160 (44%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TYNT+L+      +   A ++  +M T G+ PN  T+N +ID       FK A  +  MM
Sbjct: 300 TYNTLLNGFSNEGKVLIARQLLNEMLTFGLSPNHVTFNALIDGHISEGNFKEALKMFHMM 359

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
              G     ++Y  L+  L    +FD A      +   G+    + Y  ++   C+ G +
Sbjct: 360 EAKGLIGTEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFL 419

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAME 670
           D    ++ +M ++ + PD  T   + +G+   G   +A E
Sbjct: 420 DEAVVMLNEMSKDGIDPDIVTYSALINGFCRVGRLKTAKE 459



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 77/388 (19%), Positives = 149/388 (38%), Gaps = 57/388 (14%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ V+H   +      A +L+  M   G+     TY+  I  +        G  +L+ M
Sbjct: 230 TYNTVLHWYCKKGRFKAAIELLDHMNLKGVNADVCTYNMLIHDLCRSNRSAKGYLLLRDM 289

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQI---SRCTNPKPFSAFLAACDTMDKP 411
           ++  + P + T  TL    S   ++ +A  LL+++       N   F+A +    +    
Sbjct: 290 RKRMIHPNEVTYNTLLNGFSNEGKVLIARQLLNEMLTFGLSPNHVTFNALIDGHISEGNF 349

Query: 412 ERAIKIFAKMRQK--LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
           + A+K+F  M  K  +  ++    LL  L  N           ++ D A+      M M 
Sbjct: 350 KEALKMFHMMEAKGLIGTEVSYGVLLDGLCKN-----------AEFDLAR---GFYMRMK 395

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAM 529
           RN +    I+   ++  L   G + E                                A+
Sbjct: 396 RNGVCVGRITYTGMIDGLCKNGFLDE--------------------------------AV 423

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
            +  +M   GI P+  TY+ +I+    +   K+A  +V  + R G  P  + Y+ LI   
Sbjct: 424 VMLNEMSKDGIDPDIVTYSALINGFCRVGRLKTAKEIVCRIYRVGLSPNGIIYSTLIYNC 483

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649
              G   E + + + + LEG   D   +N ++   C+ G++   E  +  M  + + P+ 
Sbjct: 484 CRMGCLKETIRIYEAMILEGNTPDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNA 543

Query: 650 STCHFVFSGYVNCGFHNSAMEALQVLSM 677
            +   + +GY       S+ E L+  S+
Sbjct: 544 VSFDCLINGY------GSSGEGLKAFSV 565



 Score = 57.0 bits (136), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 110/605 (18%), Positives = 229/605 (37%), Gaps = 42/605 (6%)

Query: 93  ILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERY 152
           IL    +S + + V    + M +++I  +   + +++  LC  G  +++S L+  + E+ 
Sbjct: 164 ILGSIVKSCEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFKKSSYLMQKM-EKS 222

Query: 153 GIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAV 212
           G  P +  YN+ L    K      A   LD M+ + V  +  TY  L+         +  
Sbjct: 223 GYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMNLKGVNADVCTYNMLIHDLCRSNRSAKG 282

Query: 213 HEIWEDYIKH-YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMM-GKLYINRTSEG 270
           + +  D  K     +  +    +  F+    +  A + L  M+   +    +  N   +G
Sbjct: 283 YLLLRDMRKRMIHPNEVTYNTLLNGFSNEGKVLIARQLLNEMLTFGLSPNHVTFNALIDG 342

Query: 271 RLRSSRLDIPIPLNALPVMKVL---RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPS 327
            +        + +  +   K L     S+  ++    +     LA    ++M+  G+   
Sbjct: 343 HISEGNFKEALKMFHMMEAKGLIGTEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVG 402

Query: 328 SHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLD 387
             TY G I  +  +  L   + +L  M ++ + P   T + L     +   L  A+ ++ 
Sbjct: 403 RITYTGMIDGLCKNGFLDEAVVMLNEMSKDGIDPDIVTYSALINGFCRVGRLKTAKEIVC 462

Query: 388 QISRCT---NPKPFSAFLAACDTMDKPERAIKIF-AKMRQKLRPDIRTYELLFSLFGNVN 443
           +I R     N   +S  +  C  M   +  I+I+ A + +   PD  T+ +L +      
Sbjct: 463 RIYRVGLSPNGIIYSTLIYNCCRMGCLKETIRIYEAMILEGNTPDHFTFNVLVTSLCKA- 521

Query: 444 APYEEGNMFSQVDSAKRI--NAIEMDMARNNIQHSHISMK-------------------- 481
               E   F +  ++  I  NA+  D   N    S   +K                    
Sbjct: 522 GKVAEAEEFMRCMTSDGILPNAVSFDCLINGYGSSGEGLKAFSVFDEMTKVGHHPTFFTY 581

Query: 482 -NLLKALGAEGMI---RELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKT 537
            +LLK L   G +    + ++   +    + T   NT++ ++ ++    +A+ +F +M  
Sbjct: 582 GSLLKGLCKGGHLIAAEKFLKSLQNVPAAVDTVMCNTLITAMCKSGNLDKAVSLFGEMVQ 641

Query: 538 CGIPPNAATYNIMIDCCSIIRCFKSASALV---SMMVRDGFYPQTMTYTALIKILLDYGD 594
             I P++ TY  +I    + R  K+  A++       R    P  + YT  +  +   G 
Sbjct: 642 RSILPDSFTYTSLIS--GLCRKGKTVIAILFAKEAEARGNLVPNKVMYTCFVDGMFKAGQ 699

Query: 595 FDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHF 654
           +         +   G+  DV+  N ++      G+I+    ++ +M      P+ +T + 
Sbjct: 700 WKAGFYFRQQMDKLGLTRDVVTTNAMIDGYSRMGKIEKTHDLLFEMGNQNQGPNLTTYNI 759

Query: 655 VFSGY 659
           +  GY
Sbjct: 760 LLHGY 764



 Score = 56.2 bits (134), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 75/376 (19%), Positives = 139/376 (36%), Gaps = 29/376 (7%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           ++F+ ++ +  +      AE+ M  M S G+ P++ ++D  I    S         V   
Sbjct: 509 FTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNAVSFDCLINGYGSSGEGLKAFSVFDE 568

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTM----- 408
           M +    P   T  +L     K   L  AE  L  +       P +     C+T+     
Sbjct: 569 MTKVGHHPTFFTYGSLLKGLCKGGHLIAAEKFLKSLQNV----PAAVDTVMCNTLITAMC 624

Query: 409 --DKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIE 465
                ++A+ +F +M Q+ + PD  TY  L S          +G     +  AK   A  
Sbjct: 625 KSGNLDKAVSLFGEMVQRSILPDSFTYTSLIS------GLCRKGKTVIAILFAKEAEA-- 676

Query: 466 MDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLG----TPTYNTVLHSLVE 521
               R N+  + +     +  +   G  +    YF      LG      T N ++     
Sbjct: 677 ----RGNLVPNKVMYTCFVDGMFKAGQWKAGF-YFRQQMDKLGLTRDVVTTNAMIDGYSR 731

Query: 522 AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMT 581
             +  +  ++  +M      PN  TYNI++   S  +   ++  L   M+  G  P  +T
Sbjct: 732 MGKIEKTHDLLFEMGNQNQGPNLTTYNILLHGYSKRKHVSTSFMLYRSMILSGILPDKLT 791

Query: 582 YTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMH 641
             ++I  + +    +  L +L      G+  D   +N ++ K C  G I+    ++  M 
Sbjct: 792 CYSIILGICESNMLEIGLKILKAFICRGVEVDRHTFNMLISKCCANGEINWAFDMVNVMT 851

Query: 642 QNKVQPDPSTCHFVFS 657
              +  D +TC  + S
Sbjct: 852 SLGISLDKNTCDAIVS 867



 Score = 50.4 bits (119), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 116/573 (20%), Positives = 212/573 (36%), Gaps = 77/573 (13%)

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGE--RYGIYPILPVYNSFLGACAK 170
           M+   + +    Y  M+  LCK G+L+EA   +  L E  + GI P +  Y++ +    +
Sbjct: 394 MKRNGVCVGRITYTGMIDGLCKNGFLDEA---VVMLNEMSKDGIDPDIVTYSALINGFCR 450

Query: 171 LHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYSLSIFS 229
           +  +  A   +  +    +  N + Y+ L+        L     I+E  I +  +   F+
Sbjct: 451 VGRLKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKETIRIYEAMILEGNTPDHFT 510

Query: 230 LRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVM 289
               V S  +   +  A E ++ M             TS+G L           NA+   
Sbjct: 511 FNVLVTSLCKAGKVAEAEEFMRCM-------------TSDGILP----------NAV--- 544

Query: 290 KVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGME 349
                SF  +I+  G +     A  +  +M  +G  P+  TY   ++ +     L    +
Sbjct: 545 -----SFDCLINGYGSSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLIAAEK 599

Query: 350 VLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPKPFSAFLAACDTM 408
            LK +Q            TL     K+  LD A +L  + + R   P  F+         
Sbjct: 600 FLKSLQNVPAAVDTVMCNTLITAMCKSGNLDKAVSLFGEMVQRSILPDSFTYTSLISGLC 659

Query: 409 DKPERAIKIFAKMRQKLRPDIRTYELLFSLF--GNVNAP-YEEGNMFSQ----------- 454
            K +  I I      + R ++   +++++ F  G   A  ++ G  F Q           
Sbjct: 660 RKGKTVIAILFAKEAEARGNLVPNKVMYTCFVDGMFKAGQWKAGFYFRQQMDKLGLTRDV 719

Query: 455 ------VDSAKRINAIE------MDMARNNIQHSHISMKNLL-------KALGAEGMI-R 494
                 +D   R+  IE       +M   N Q  +++  N+L       K +    M+ R
Sbjct: 720 VTTNAMIDGYSRMGKIEKTHDLLFEMGNQN-QGPNLTTYNILLHGYSKRKHVSTSFMLYR 778

Query: 495 ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCC 554
            +I        P     Y+ +L  + E+      ++I K     G+  +  T+N++I  C
Sbjct: 779 SMIL---SGILPDKLTCYSIIL-GICESNMLEIGLKILKAFICRGVEVDRHTFNMLISKC 834

Query: 555 SIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDV 614
                   A  +V++M   G      T  A++ +L     F E+  +L  +S +GI  + 
Sbjct: 835 CANGEINWAFDMVNVMTSLGISLDKNTCDAIVSVLNRNHRFQESRMVLHEMSKQGISPES 894

Query: 615 LLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
             Y  +L   C  G I     + E+M  +K+ P
Sbjct: 895 RKYIGLLNGLCRVGDIKTAFVVKEEMIAHKICP 927



 Score = 48.5 bits (114), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 60/284 (21%), Positives = 126/284 (44%), Gaps = 28/284 (9%)

Query: 398  FSAFLAACDTMDKPERAIKIF-AKMRQKLRPDIRTYELLFS---LFGNVNAPYEEGNMFS 453
            +S  L  C++ +  E  +KI  A + + +  D  T+ +L S     G +N  ++  N+ +
Sbjct: 793  YSIILGICES-NMLEIGLKILKAFICRGVEVDRHTFNMLISKCCANGEINWAFDMVNVMT 851

Query: 454  QVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYN 513
             +  +   N  +  ++  N  H     + +L  +  +G+  E             +  Y 
Sbjct: 852  SLGISLDKNTCDAIVSVLNRNHRFQESRMVLHEMSKQGISPE-------------SRKYI 898

Query: 514  TVLHSLVEAQESHRAMEIFKQM---KTCGIPPNAATYNIMIDCCSIIRCFKS--ASALVS 568
             +L+ L    +   A  + ++M   K C  PPN A  + M+   ++ +C K+  AS L+ 
Sbjct: 899  GLLNGLCRVGDIKTAFVVKEEMIAHKIC--PPNVAE-SAMVR--ALAKCGKADEASLLLR 953

Query: 569  MMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
             M++    P   ++T L+ +    G+  EAL L  ++S  G+  D++ YN ++   C KG
Sbjct: 954  SMLKMKLVPTIASFTTLMHLFCKNGNVTEALELRVVMSNCGLKLDLVSYNVLITGLCAKG 1013

Query: 629  RIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEAL 672
             + +   + E+M ++    + +T   +  G ++ G   S  + +
Sbjct: 1014 DMAIAFELFEEMKRDGFLANVTTYKALVGGILSQGTEFSGTDII 1057


>gi|302775582|ref|XP_002971208.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
 gi|300161190|gb|EFJ27806.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
          Length = 599

 Score = 93.6 bits (231), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 117/536 (21%), Positives = 200/536 (37%), Gaps = 75/536 (13%)

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
           M E+ +  ++  Y +++  L K G L +A NL   L    G+ P    Y S +      +
Sbjct: 1   MNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKL-LHSGVTPSTVAYTSLIHGLCMAN 59

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELL----KLAVWQKNLSAVHEIWEDY----IKHYS 224
           S   A      M+ R    + VTY  ++    K  + ++    + ++ ED     +  Y+
Sbjct: 60  SFDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYN 119

Query: 225 LSIFSLRK------FVWSFTRLRDLKSAYETLQH-MVALAMMGKLYINRTSEGRLRSSRL 277
             +  L K       +  F  +  L        H  + L +  +  I++  +        
Sbjct: 120 TVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAK 179

Query: 278 DIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRA 337
           DIP             WS+  +I    +      A +L  +M   G+ PS+ TY+  I  
Sbjct: 180 DIPPD----------SWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHG 229

Query: 338 IVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP 397
           +     L   +E+ K M+    +P                            SR T    
Sbjct: 230 MCLAYTLDEALELFKSMRSKGCRP----------------------------SRFT---- 257

Query: 398 FSAFLAACDTMDKPERAIKIFAKMRQKLR-PDIRTYELLFSLFGNVNAPYEEGNMFSQVD 456
           F+  + A     K + A ++  +M      PD+ TY  L S   ++          ++VD
Sbjct: 258 FNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSI----------ARVD 307

Query: 457 SAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMI---RELIQYFCDSKTPLGTPTYN 513
            A+ +  +E DM +   + + ++   L+  L   G I   RE++     S       TYN
Sbjct: 308 DARHL--LE-DMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYN 364

Query: 514 TVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRD 573
           T++H    A ++ RA E+   M   G+ PN  TY  ++           A  + + M   
Sbjct: 365 TLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSS 424

Query: 574 GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
           G  P   TYTALI      G  D  L L   +   GI  D ++Y T+  + C+ GR
Sbjct: 425 GCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGR 480



 Score = 93.2 bits (230), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 95/401 (23%), Positives = 160/401 (39%), Gaps = 22/401 (5%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           WS+  +I    +      A  L  ++   G+ PS+  Y   I  +       +  E+   
Sbjct: 11  WSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFAD 70

Query: 354 MQQNNLKPQDSTI-ATLSVECSKALELDLAEALLDQISRCTNPK--PFSAFLAACDTMDK 410
           M +    P   T    +   C + +  +  + +   I     P    ++  +       +
Sbjct: 71  MNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSR 130

Query: 411 PERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
            E A+ +F +M R    P+ R++  +  + G            S++D A ++     +M 
Sbjct: 131 VEEALLLFNEMERLGCTPNRRSHNTI--ILGLCQQ--------SKIDQACQVF---HEME 177

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESH 526
             +I     S   L+  L   G + E   L Q   DS       TYN V+H +  A    
Sbjct: 178 AKDIPPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLD 237

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
            A+E+FK M++ G  P+  T+NI+ID          A  L+  M  DG  P  +TY+ LI
Sbjct: 238 EALELFKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLI 297

Query: 587 KILLDYGDFDEALNLL-DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
             L      D+A +LL D+V  +  P  V+  NT++   C+ GRI     +++ M  +  
Sbjct: 298 SGLCSIARVDDARHLLEDMVKRQCKP-TVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQ 356

Query: 646 QPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
            PD  T + +  G+   G    A E L  +  R L   V T
Sbjct: 357 SPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVT 397



 Score = 82.4 bits (202), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 86/209 (41%), Gaps = 3/209 (1%)

Query: 468 MARNNIQHSHISMKNLLKALGAEGMI---RELIQYFCDSKTPLGTPTYNTVLHSLVEAQE 524
           M   N+     S   L+  L   G +   R L Q    S     T  Y +++H L  A  
Sbjct: 1   MNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANS 60

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
              A E+F  M   G PP+  TYN+MID        + A  L+  M+ DG  P  +TY  
Sbjct: 61  FDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNT 120

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
           ++  L      +EAL L + +   G   +   +NTI+   C++ +ID    +  +M    
Sbjct: 121 VMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKD 180

Query: 645 VQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           + PD  +   +  G    G  N A +  Q
Sbjct: 181 IPPDSWSYGILIDGLAKAGKLNEAYKLFQ 209



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 79/364 (21%), Positives = 142/364 (39%), Gaps = 20/364 (5%)

Query: 319 MQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALE 378
           M    + P S +Y   I  +     L +   + + +  + + P      +L      A  
Sbjct: 1   MNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANS 60

Query: 379 LDLAEALLDQISR--CT-NPKPFSAFLAACDTMDKPERAIKIFAKMRQKLR-PDIRTYEL 434
            D A  L   ++R  C  +P  ++  + A       E A  +  KM +    PD+ TY  
Sbjct: 61  FDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNT 120

Query: 435 LFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIR 494
           +       +   E   +F++             M R     +  S   ++  L  +  I 
Sbjct: 121 VMDGLCKSSRVEEALLLFNE-------------MERLGCTPNRRSHNTIILGLCQQSKID 167

Query: 495 ELIQYFCDSKT---PLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI 551
           +  Q F + +    P  + +Y  ++  L +A + + A ++F++M   GI P+A TYN++I
Sbjct: 168 QACQVFHEMEAKDIPPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVI 227

Query: 552 DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIP 611
               +      A  L   M   G  P   T+  LI      G  DEA  LL  ++ +G  
Sbjct: 228 HGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHV 287

Query: 612 HDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEA 671
            DV+ Y+T++   C   R+D    ++E M + + +P   T + +  G    G    A E 
Sbjct: 288 PDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREV 347

Query: 672 LQVL 675
           L  +
Sbjct: 348 LDAM 351



 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 83/372 (22%), Positives = 152/372 (40%), Gaps = 22/372 (5%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ +IH      +   A +L   M   G  PS  TY+  I A      L    +++K M
Sbjct: 47  AYTSLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKM 106

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR--CT-NPKPFSAFLAACDTMDKP 411
            ++   P   T  T+     K+  ++ A  L +++ R  CT N +  +  +       K 
Sbjct: 107 IEDGHVPDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKI 166

Query: 412 ERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           ++A ++F +M  K + PD  +Y +L           E   +F +             M  
Sbjct: 167 DQACQVFHEMEAKDIPPDSWSYGILIDGLAKAGKLNEAYKLFQR-------------MLD 213

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHR 527
           + I  S ++   ++  +     + E ++ F   ++    P   T+N ++ +  +  +   
Sbjct: 214 SGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKLDE 273

Query: 528 AMEIFKQMKTCGIPPNAATYNIMID-CCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
           A  + K+M   G  P+  TY+ +I   CSI R    A  L+  MV+    P  +T   LI
Sbjct: 274 AFRLLKRMTDDGHVPDVVTYSTLISGLCSIAR-VDDARHLLEDMVKRQCKPTVVTQNTLI 332

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
             L   G   EA  +LD +   G   DV+ YNT++   C  G+ +    ++  M    + 
Sbjct: 333 HGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLA 392

Query: 647 PDPSTCHFVFSG 658
           P+  T   + SG
Sbjct: 393 PNVVTYTALVSG 404



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 77/363 (21%), Positives = 145/363 (39%), Gaps = 26/363 (7%)

Query: 304 GRTQNSGLAEQLML--QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKP 361
           G  ++S + E L+L  +M+ LG  P+  +++  I  +     +    +V   M+  ++ P
Sbjct: 124 GLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKDIPP 183

Query: 362 QDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPKP--FSAFLAACDTMDKPERAIKIF 418
              +   L    +KA +L+ A  L  + +     P    ++  +         + A+++F
Sbjct: 184 DSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELF 243

Query: 419 AKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSH 477
             MR K  RP   T+ +L      ++A  + G +       KR       M  +      
Sbjct: 244 KSMRSKGCRPSRFTFNIL------IDAHCKRGKLDEAFRLLKR-------MTDDGHVPDV 290

Query: 478 ISMKNLLKALGAEGMI---RELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQ 534
           ++   L+  L +   +   R L++     +      T NT++H L +A     A E+   
Sbjct: 291 VTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDA 350

Query: 535 MKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGD 594
           M + G  P+  TYN ++         + A  L+S MV  G  P  +TYTAL+  L     
Sbjct: 351 MVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANR 410

Query: 595 FDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHF 654
             EA  +   +   G   ++  Y  ++   C  G++D    +  +M    + PD    H 
Sbjct: 411 LPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPD----HV 466

Query: 655 VFS 657
           V+ 
Sbjct: 467 VYG 469



 Score = 59.3 bits (142), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 114/496 (22%), Positives = 192/496 (38%), Gaps = 34/496 (6%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y +M+ A CK G LEEA +LI  + E  G  P +  YN+ +    K   +  A L  + M
Sbjct: 83  YNVMIDASCKRGMLEEACDLIKKMIED-GHVPDVVTYNTVMDGLCKSSRVEEALLLFNEM 141

Query: 185 DSRMVGKNEVTY-TELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDL 243
           +      N  ++ T +L L    K   A     E   K      +S    +    +   L
Sbjct: 142 ERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKDIPPDSWSYGILIDGLAKAGKL 201

Query: 244 KSAYETLQHMVALAMM-GKLYINRTSEGRLRSSRLDIPIPLNALPVMKVL--------RW 294
             AY+  Q M+   +    +  N    G   +  LD      AL + K +        R+
Sbjct: 202 NEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLD-----EALELFKSMRSKGCRPSRF 256

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +F+ +I A  +      A +L+ +M   G  P   TY   I  + S   + +   +L+ M
Sbjct: 257 TFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDM 316

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPK--PFSAFLAACDTMDKP 411
            +   KP   T  TL     KA  +  A  +LD  +S   +P    ++  +       + 
Sbjct: 317 VKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQT 376

Query: 412 ERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           ERA ++ + M  + L P++ TY  L S     N   E   +F+Q+ S+          A 
Sbjct: 377 ERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSS--------GCAP 428

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAME 530
           N   ++ + +     A   +G ++   +  C   +P     Y T+   L ++  S RA+E
Sbjct: 429 NLFTYTALIL-GFCSAGQVDGGLKLFGEMVCAGISP-DHVVYGTLAAELCKSGRSARALE 486

Query: 531 IFKQMKTCGIPPNA---ATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           I ++ +   +   A     Y   +D        + A   V  MVR G  P      +L+ 
Sbjct: 487 ILREGRE-SLRSEAWGDEVYRFAVDGLLEAGKMEMALGFVRDMVRGGQLPAPERCASLVA 545

Query: 588 ILLDYGDFDEALNLLD 603
            L   G   EA  +L+
Sbjct: 546 GLCKSGQGGEARAVLE 561



 Score = 45.1 bits (105), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 80/396 (20%), Positives = 150/396 (37%), Gaps = 36/396 (9%)

Query: 55  TQMQIVDALCRGERSRASHLLLN----LG-----HAHHSLGADDFFHILNYCARSPDPLF 105
           T   ++D LC+  R   + LL N    LG      +H+++       IL  C +S     
Sbjct: 117 TYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTI-------ILGLCQQSKIDQ- 168

Query: 106 VMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFL 165
             + +  ME K+I  ++  Y +++  L K G L EA  L   + +  GI P    YN  +
Sbjct: 169 ACQVFHEMEAKDIPPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDS-GITPSAVTYNVVI 227

Query: 166 GACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELL----KLAVWQKNLSAVHEIWEDYIK 221
                 +++  A      M S+    +  T+  L+    K     +    +  + +D   
Sbjct: 228 HGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHV 287

Query: 222 HYSLSIFSLRKFVWSFTRLRDLKSAYETL---QHMVALAMMGKLYINRTSEGRLRSSR-- 276
              ++  +L   + S  R+ D +   E +   Q    +     L       GR++ +R  
Sbjct: 288 PDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREV 347

Query: 277 LDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIR 336
           LD  +     P +     +++ ++H   R   +  A +L+  M + GL P+  TY   + 
Sbjct: 348 LDAMVSSGQSPDV----VTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVS 403

Query: 337 AIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPK 396
            +     L     V   M+ +   P   T   L +    A ++D    L  ++  C    
Sbjct: 404 GLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMV-CAGIS 462

Query: 397 P----FSAFLAACDTMDKPERAIKIFAKMRQKLRPD 428
           P    +    A      +  RA++I  + R+ LR +
Sbjct: 463 PDHVVYGTLAAELCKSGRSARALEILREGRESLRSE 498


>gi|22531122|gb|AAM97065.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
 gi|62320656|dbj|BAD95323.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
          Length = 596

 Score = 93.6 bits (231), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 85/400 (21%), Positives = 180/400 (45%), Gaps = 20/400 (5%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           ++  V++   +  ++ LA  L+ +M++  ++     ++  I ++   R + + + + K M
Sbjct: 189 TYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEM 248

Query: 355 QQNNLKPQDSTIATL-SVECSKALELDLAEALLDQISRCTNPK--PFSAFLAACDTMDKP 411
           +   ++P   T ++L S  CS     D ++ L D I +  NP    F+A + A     K 
Sbjct: 249 ETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKF 308

Query: 412 ERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
             A K++  M ++ + PDI TY  L + F           M  ++D AK++      M  
Sbjct: 309 VEAEKLYDDMIKRSIDPDIFTYNSLVNGF----------CMHDRLDKAKQMFEF---MVS 355

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYF--CDSKTPLG-TPTYNTVLHSLVEAQESHR 527
            +     ++   L+K       + +  + F     +  +G T TY T++  L    +   
Sbjct: 356 KDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDN 415

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A ++FKQM + G+PP+  TY+I++D        + A  +   M +         YT +I+
Sbjct: 416 AQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIE 475

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
            +   G  D+  +L   +SL+G+  +V+ YNT++   C K  +     ++++M ++   P
Sbjct: 476 GMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLP 535

Query: 648 DPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTL 687
           +  T + +   ++  G   ++ E ++ +       + ST+
Sbjct: 536 NSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTI 575



 Score = 86.3 bits (212), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 106/507 (20%), Positives = 201/507 (39%), Gaps = 33/507 (6%)

Query: 196 YTELLKLAVWQKNLSAVHEIWEDYIKHYSL-SIFSLRKFVWSFTRLRDLKSAYETLQHMV 254
           Y E+L+  +    L     ++   +K   L SI    K + +  +++         + M 
Sbjct: 15  YREILRNGLHDMKLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQ 74

Query: 255 ALAMMGKLY-----IN---RTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRT 306
            L ++  LY     IN   R S+  L  + L   + L   P +  L    +   H  G+ 
Sbjct: 75  RLEIVHGLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCH--GKR 132

Query: 307 QNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTI 366
            +  +A  L+ QM  +G +P + T+   I  +         + ++  M Q   +P   T 
Sbjct: 133 ISDAVA--LVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTY 190

Query: 367 ATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDK---PERAIKIFAKMRQ 423
             +     K  + DLA  LL+++           F    D++ K    + A+ +F +M  
Sbjct: 191 GVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMET 250

Query: 424 K-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKN 482
           K +RP++ TY  L S   +     +   + S             DM    I  + ++   
Sbjct: 251 KGIRPNVVTYSSLISCLCSYGRWSDASQLLS-------------DMIEKKINPNLVTFNA 297

Query: 483 LLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCG 539
           L+ A   EG   E  + + D       P   TYN++++         +A ++F+ M +  
Sbjct: 298 LIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKD 357

Query: 540 IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEAL 599
             P+  TYN +I      +  +  + L   M   G    T+TYT LI+ L   GD D A 
Sbjct: 358 CFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQ 417

Query: 600 NLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
            +   +  +G+P D++ Y+ +L   C  G+++    + + M +++++ D      +  G 
Sbjct: 418 KVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGM 477

Query: 660 VNCGFHNSAMEALQVLSMRMLCEEVST 686
              G  +   +    LS++ +   V T
Sbjct: 478 CKAGKVDDGWDLFCSLSLKGVKPNVVT 504



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 85/460 (18%), Positives = 179/460 (38%), Gaps = 76/460 (16%)

Query: 93  ILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERY 152
           ++N   +  D    +     ME  +I  +   +  ++ +LCK  ++++A NL   + E  
Sbjct: 193 VVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEM-ETK 251

Query: 153 GIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAV 212
           GI P +  Y+S +           A+  L  M  + +  N VT+  L+   V +      
Sbjct: 252 GIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEA 311

Query: 213 HEIWEDYIKH-YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGR 271
            ++++D IK      IF+    V  F     L  A +  + MV+                
Sbjct: 312 EKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVS---------------- 355

Query: 272 LRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTY 331
                       +  P +     +++ +I    +++      +L  +M   GL   + TY
Sbjct: 356 -----------KDCFPDV----VTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTY 400

Query: 332 DGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR 391
              I+ +  D    N  +V K M  + + P    I T S+             LLD +  
Sbjct: 401 TTLIQGLFHDGDCDNAQKVFKQMVSDGVPPD---IMTYSI-------------LLDGL-- 442

Query: 392 CTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGN 450
           C N               K E+A+++F  M++ +++ DI  Y  +           +  +
Sbjct: 443 CNNG--------------KLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWD 488

Query: 451 MFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP 510
           +F  +     +  ++ ++   N   S +  K LL+   A  +++++ +   D   P  + 
Sbjct: 489 LFCSL----SLKGVKPNVVTYNTMISGLCSKRLLQE--AYALLKKMKE---DGPLP-NSG 538

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIM 550
           TYNT++ + +   +   + E+ ++M++C    +A+T  ++
Sbjct: 539 TYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGLV 578


>gi|297833172|ref|XP_002884468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330308|gb|EFH60727.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 113/465 (24%), Positives = 194/465 (41%), Gaps = 33/465 (7%)

Query: 221 KHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIP 280
           K Y+  +    K +  F  LR++  A   ++ +           N    G  + +R+D  
Sbjct: 114 KGYNPDVILCTKLIKGFFTLRNVPKAVRVMEILEKFGQPDVFAYNALINGFCKMNRIDDA 173

Query: 281 IPLNALPVMKVLRWSFSDVIHA------CGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGF 334
                L  M+   +S   V +       C R +   LA +++ Q+ S   QP+  TY   
Sbjct: 174 T--RVLDRMRSKDFSPDTVTYNIMIGSLCSRGK-LDLALKVLDQLLSDNCQPTVITYTIL 230

Query: 335 IRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQIS-RCT 393
           I A + + G+   +++L  M    LKP   T  T+     K   +D A  ++  +  +  
Sbjct: 231 IEATMLEGGVDEALKLLDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMIRNLELKGC 290

Query: 394 NPK--PFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGN 450
            P    ++  L A     K E   K+  KM  +K  P++ TY +L +     +   EE  
Sbjct: 291 EPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCR-DGKIEEA- 348

Query: 451 MFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYF----CDSKTP 506
                     +N +++ M    +     S   L+ A   EG +   I++      D   P
Sbjct: 349 ----------MNLLKL-MKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLP 397

Query: 507 LGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASAL 566
                YNTVL +L +  ++ +A+EIF ++   G  PN+++YN M            A  +
Sbjct: 398 -DIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHM 456

Query: 567 VSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL-DLVSLEGIPHDVLLYNTILKKAC 625
           +  MV +G  P  +TY ++I  L   G  D+A  LL D+ S E  P  V+ YN +L   C
Sbjct: 457 ILEMVSNGIDPDEITYNSMISCLCREGMVDKAFELLVDMRSCEFHP-SVVTYNIVLLGFC 515

Query: 626 EKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAME 670
           +  RI+    +++ M  N  +P+ +T   +  G    G+   AME
Sbjct: 516 KAHRIEDAIDVLDSMVGNGCRPNETTYTVLIEGIGFAGYRAEAME 560



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 94/440 (21%), Positives = 176/440 (40%), Gaps = 36/440 (8%)

Query: 150 ERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNL 209
           E++G  P +  YN+ +    K++ +  A   LD M S+    + VTY  ++     +  L
Sbjct: 147 EKFG-QPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKL 205

Query: 210 SAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRD-LKSAYETLQHMVALAMMGKLYI-NRT 267
               ++ +  +             +   T L   +  A + L  M++  +   ++  N  
Sbjct: 206 DLALKVLDQLLSDNCQPTVITYTILIEATMLEGGVDEALKLLDEMLSRGLKPDMFTYNTI 265

Query: 268 SEGRLRSSRLDIPIPLNALPVMKVLRW--------SFSDVIHACGRTQNSGLAEQLMLQM 319
             G  +   +D      A  +++ L          S++ ++ A          E+LM +M
Sbjct: 266 IRGMCKEGMVD-----RAFEMIRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKM 320

Query: 320 QSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALEL 379
            S    P+  TY   I  +  D  +   M +LK+M++  L P   +   L     +   L
Sbjct: 321 FSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRL 380

Query: 380 DLA-EALLDQISRCTNPK--PFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELL 435
           D+A E L   IS    P    ++  LA      K ++A++IF K+ +    P+  +Y  +
Sbjct: 381 DVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTM 440

Query: 436 FSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRE 495
           FS             ++S  D  + ++ I ++M  N I    I+  +++  L  EGM+ +
Sbjct: 441 FSA------------LWSSGDKIRALHMI-LEMVSNGIDPDEITYNSMISCLCREGMVDK 487

Query: 496 LIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID 552
             +   D ++    P   TYN VL    +A     A+++   M   G  PN  TY ++I+
Sbjct: 488 AFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAIDVLDSMVGNGCRPNETTYTVLIE 547

Query: 553 CCSIIRCFKSASALVSMMVR 572
                     A  L + +VR
Sbjct: 548 GIGFAGYRAEAMELANDLVR 567



 Score = 63.2 bits (152), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 78/172 (45%)

Query: 509 TPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVS 568
           T TYN ++ SL    +   A+++  Q+ +    P   TY I+I+   +      A  L+ 
Sbjct: 189 TVTYNIMIGSLCSRGKLDLALKVLDQLLSDNCQPTVITYTILIEATMLEGGVDEALKLLD 248

Query: 569 MMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
            M+  G  P   TY  +I+ +   G  D A  ++  + L+G   DV+ YN +L+    +G
Sbjct: 249 EMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMIRNLELKGCEPDVISYNILLRALLNQG 308

Query: 629 RIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRML 680
           + +  E ++ +M   K  P+  T   + +     G    AM  L+++  + L
Sbjct: 309 KWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGL 360



 Score = 45.4 bits (106), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 46/199 (23%), Positives = 88/199 (44%), Gaps = 10/199 (5%)

Query: 59  IVDALCR-GERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKE 117
           ++  LC+ G+  +A  +   LG    S  +  +  + +    S D +  +     M    
Sbjct: 405 VLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMVSNG 464

Query: 118 IGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHA 177
           I  +   Y  M+  LC+ G +++A  L+  +      +P +  YN  L    K H +  A
Sbjct: 465 IDPDEITYNSMISCLCREGMVDKAFELLVDM-RSCEFHPSVVTYNIVLLGFCKAHRIEDA 523

Query: 178 NLCLDLMDSRMVGK----NEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKF 233
              +D++DS MVG     NE TYT L++   +    +   E+  D ++  ++S +S ++ 
Sbjct: 524 ---IDVLDS-MVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDLVRINAISEYSFKRL 579

Query: 234 VWSFTRLRDLKSAYETLQH 252
             +F  L  L+ + +T  H
Sbjct: 580 HRTFPLLNVLQRSSQTFGH 598


>gi|255556189|ref|XP_002519129.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541792|gb|EEF43340.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 643

 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 84/384 (21%), Positives = 160/384 (41%), Gaps = 49/384 (12%)

Query: 289 MKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGM 348
           +K   ++F+ +I+   +      A+  +  M++LG++P+  TY+  I    S   +    
Sbjct: 232 IKSTVYTFNIMINVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSRGRVEGAR 291

Query: 349 EVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTM 408
            VL IM+   ++P   T  +L     K  +L+ A  +L+++           +    D  
Sbjct: 292 MVLDIMKNRGVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLIDGY 351

Query: 409 DKPERAIKIFA----KMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAI 464
                 +K F      +R+ + P + TY LL      ++A + EG M    D A      
Sbjct: 352 CNKGDLVKAFGYRDEMVRRAILPTVSTYNLL------IHALFLEGKM----DEAD----- 396

Query: 465 EMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQE 524
                             ++K +G  G++ + I             TYN +++       
Sbjct: 397 -----------------GMIKDMGDSGIVPDSI-------------TYNILINGYCRCGN 426

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
           + +A  +  +M + GI P   TY  +I   S     K+A  L   ++R+G  P  + + A
Sbjct: 427 AKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEKIIREGASPDLIMFNA 486

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
           LI      G+ D A  LL  +    I  D + YNT+++  C +G+++    ++++M +  
Sbjct: 487 LIDGHCANGNLDRAFALLKEMDKRNIVPDEVTYNTLMQGRCREGKVEEARELLKEMKRRG 546

Query: 645 VQPDPSTCHFVFSGYVNCGFHNSA 668
           ++PD  + + + SGY   G  N A
Sbjct: 547 IRPDHISYNTLISGYSKRGDINDA 570



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 115/516 (22%), Positives = 205/516 (39%), Gaps = 70/516 (13%)

Query: 160 VYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDY 219
           V++  + AC +L     A  C D+M  + V     T+  +L L +    L+    +W  Y
Sbjct: 168 VFDMLIRACCELKRGDDAFECFDMMKEKGVVPKIETFNAMLSLFL---KLNQTETVWVLY 224

Query: 220 IKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDI 279
            + + L I                KS   T   M+ +            EG+L+ ++ D 
Sbjct: 225 AEMFRLKI----------------KSTVYTFNIMINVL---------CKEGKLKKAK-DF 258

Query: 280 PIPLNALPVMKVLRWSFSDVIHA-CGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAI 338
              +  L V K    +++ VIH  C R +  G A  ++  M++ G++P S+TY   I  +
Sbjct: 259 IGSMENLGV-KPNVVTYNTVIHGYCSRGRVEG-ARMVLDIMKNRGVEPDSYTYGSLISGM 316

Query: 339 VSDRGLRNGMEVLKIMQQNNLKPQDSTIATL-SVECSKALELDLAEALL---DQISRCTN 394
                L     +L+ M++  L P   T  TL    C+K    DL +A     + + R   
Sbjct: 317 CKGGKLEEASGILEKMKEIGLLPTAVTYNTLIDGYCNKG---DLVKAFGYRDEMVRRAIL 373

Query: 395 P--KPFSAFLAAC---DTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEG 449
           P    ++  + A      MD+ +  IK        + PD  TY +L              
Sbjct: 374 PTVSTYNLLIHALFLEGKMDEADGMIKDMGD--SGIVPDSITYNILI------------- 418

Query: 450 NMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGT 509
           N + +  +AK+   +  +M    IQ + ++  +L+  L     ++     F        +
Sbjct: 419 NGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEKIIREGAS 478

Query: 510 PT---YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRC----FKS 562
           P    +N ++          RA  + K+M    I P+  TYN ++      RC     + 
Sbjct: 479 PDLIMFNALIDGHCANGNLDRAFALLKEMDKRNIVPDEVTYNTLMQG----RCREGKVEE 534

Query: 563 ASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILK 622
           A  L+  M R G  P  ++Y  LI      GD ++A  + D +   G    +L YN +++
Sbjct: 535 ARELLKEMKRRGIRPDHISYNTLISGYSKRGDINDAFTIRDEMLSIGFNPTLLTYNALIQ 594

Query: 623 KACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
             C+  + D+ E ++++M    + PD ST   +  G
Sbjct: 595 GLCKNQQGDLAEELLKEMVSKGITPDDSTYFSLIEG 630



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 113/257 (43%), Gaps = 16/257 (6%)

Query: 425 LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLL 484
           + PD  TY  L S         E   +  ++   K I  +   +  N +   + +  +L+
Sbjct: 302 VEPDSYTYGSLISGMCKGGKLEEASGILEKM---KEIGLLPTAVTYNTLIDGYCNKGDLV 358

Query: 485 KALG-AEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPN 543
           KA G  + M+R  I        P    TYN ++H+L    +   A  + K M   GI P+
Sbjct: 359 KAFGYRDEMVRRAI-------LPT-VSTYNLLIHALFLEGKMDEADGMIKDMGDSGIVPD 410

Query: 544 AATYNIMIDCCSIIRC--FKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNL 601
           + TYNI+I+     RC   K A  L   M+  G  P  +TYT+LI +L        A +L
Sbjct: 411 SITYNILIN--GYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDL 468

Query: 602 LDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVN 661
            + +  EG   D++++N ++   C  G +D    ++++M +  + PD  T + +  G   
Sbjct: 469 FEKIIREGASPDLIMFNALIDGHCANGNLDRAFALLKEMDKRNIVPDEVTYNTLMQGRCR 528

Query: 662 CGFHNSAMEALQVLSMR 678
            G    A E L+ +  R
Sbjct: 529 EGKVEEARELLKEMKRR 545



 Score = 63.2 bits (152), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/174 (21%), Positives = 78/174 (44%), Gaps = 3/174 (1%)

Query: 493 IRELIQYFCDSKTPLGTPT---YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNI 549
           ++++      ++  LGT +   ++ ++ +  E +    A E F  MK  G+ P   T+N 
Sbjct: 147 VKDVFHELAITRDRLGTKSSIVFDMLIRACCELKRGDDAFECFDMMKEKGVVPKIETFNA 206

Query: 550 MIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEG 609
           M+     +   ++   L + M R        T+  +I +L   G   +A + +  +   G
Sbjct: 207 MLSLFLKLNQTETVWVLYAEMFRLKIKSTVYTFNIMINVLCKEGKLKKAKDFIGSMENLG 266

Query: 610 IPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
           +  +V+ YNT++   C +GR++    +++ M    V+PD  T   + SG    G
Sbjct: 267 VKPNVVTYNTVIHGYCSRGRVEGARMVLDIMKNRGVEPDSYTYGSLISGMCKGG 320



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 75/176 (42%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           T+N +L   ++  ++     ++ +M    I     T+NIMI+        K A   +  M
Sbjct: 203 TFNAMLSLFLKLNQTETVWVLYAEMFRLKIKSTVYTFNIMINVLCKEGKLKKAKDFIGSM 262

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
              G  P  +TY  +I      G  + A  +LD++   G+  D   Y +++   C+ G++
Sbjct: 263 ENLGVKPNVVTYNTVIHGYCSRGRVEGARMVLDIMKNRGVEPDSYTYGSLISGMCKGGKL 322

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           +    I+E+M +  + P   T + +  GY N G    A      +  R +   VST
Sbjct: 323 EEASGILEKMKEIGLLPTAVTYNTLIDGYCNKGDLVKAFGYRDEMVRRAILPTVST 378



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 79/176 (44%), Gaps = 1/176 (0%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TYNT++       +  +A     +M    I P  +TYN++I    +      A  ++  M
Sbjct: 343 TYNTLIDGYCNKGDLVKAFGYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEADGMIKDM 402

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
              G  P ++TY  LI      G+  +A NL D +  +GI   ++ Y +++    ++ R+
Sbjct: 403 GDSGIVPDSITYNILINGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRM 462

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMR-MLCEEVS 685
              + + E++ +    PD    + +  G+   G  + A   L+ +  R ++ +EV+
Sbjct: 463 KAADDLFEKIIREGASPDLIMFNALIDGHCANGNLDRAFALLKEMDKRNIVPDEVT 518



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 56/255 (21%), Positives = 110/255 (43%), Gaps = 16/255 (6%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y L++ AL   G ++EA  +I  +G+  GI P    YN  +    +  +   A    D M
Sbjct: 379 YNLLIHALFLEGKMDEADGMIKDMGDS-GIVPDSITYNILINGYCRCGNAKKAFNLHDEM 437

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH-YSLSIFSLRKFVWSFTRLRDL 243
            S+ +    VTYT L+ +   +  + A  +++E  I+   S  +      +       +L
Sbjct: 438 ISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEKIIREGASPDLIMFNALIDGHCANGNL 497

Query: 244 KSAYETLQHMVALAMM-GKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLR--------W 294
             A+  L+ M    ++  ++  N   +GR R  +++      A  ++K ++         
Sbjct: 498 DRAFALLKEMDKRNIVPDEVTYNTLMQGRCREGKVE-----EARELLKEMKRRGIRPDHI 552

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           S++ +I    +  +   A  +  +M S+G  P+  TY+  I+ +  ++      E+LK M
Sbjct: 553 SYNTLISGYSKRGDINDAFTIRDEMLSIGFNPTLLTYNALIQGLCKNQQGDLAEELLKEM 612

Query: 355 QQNNLKPQDSTIATL 369
               + P DST  +L
Sbjct: 613 VSKGITPDDSTYFSL 627


>gi|15221515|ref|NP_176447.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213223|sp|Q9SXD8.1|PPR90_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62590
 gi|5454201|gb|AAD43616.1|AC005698_15 T3P18.15 [Arabidopsis thaliana]
 gi|332195860|gb|AEE33981.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 634

 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 85/400 (21%), Positives = 180/400 (45%), Gaps = 20/400 (5%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           ++  V++   +  ++ LA  L+ +M++  ++     ++  I ++   R + + + + K M
Sbjct: 227 TYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEM 286

Query: 355 QQNNLKPQDSTIATL-SVECSKALELDLAEALLDQISRCTNPK--PFSAFLAACDTMDKP 411
           +   ++P   T ++L S  CS     D ++ L D I +  NP    F+A + A     K 
Sbjct: 287 ETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKF 346

Query: 412 ERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
             A K++  M ++ + PDI TY  L + F           M  ++D AK++      M  
Sbjct: 347 VEAEKLYDDMIKRSIDPDIFTYNSLVNGF----------CMHDRLDKAKQMFEF---MVS 393

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYF--CDSKTPLG-TPTYNTVLHSLVEAQESHR 527
            +     ++   L+K       + +  + F     +  +G T TY T++  L    +   
Sbjct: 394 KDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDN 453

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A ++FKQM + G+PP+  TY+I++D        + A  +   M +         YT +I+
Sbjct: 454 AQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIE 513

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
            +   G  D+  +L   +SL+G+  +V+ YNT++   C K  +     ++++M ++   P
Sbjct: 514 GMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLP 573

Query: 648 DPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTL 687
           +  T + +   ++  G   ++ E ++ +       + ST+
Sbjct: 574 NSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTI 613



 Score = 86.7 bits (213), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 106/507 (20%), Positives = 201/507 (39%), Gaps = 33/507 (6%)

Query: 196 YTELLKLAVWQKNLSAVHEIWEDYIKHYSL-SIFSLRKFVWSFTRLRDLKSAYETLQHMV 254
           Y E+L+  +    L     ++   +K   L SI    K + +  +++         + M 
Sbjct: 53  YREILRNGLHDMKLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQ 112

Query: 255 ALAMMGKLY-----IN---RTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRT 306
            L ++  LY     IN   R S+  L  + L   + L   P +  L    +   H  G+ 
Sbjct: 113 RLEIVHGLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCH--GKR 170

Query: 307 QNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTI 366
            +  +A  L+ QM  +G +P + T+   I  +         + ++  M Q   +P   T 
Sbjct: 171 ISDAVA--LVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTY 228

Query: 367 ATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDK---PERAIKIFAKMRQ 423
             +     K  + DLA  LL+++           F    D++ K    + A+ +F +M  
Sbjct: 229 GVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMET 288

Query: 424 K-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKN 482
           K +RP++ TY  L S   +     +   + S             DM    I  + ++   
Sbjct: 289 KGIRPNVVTYSSLISCLCSYGRWSDASQLLS-------------DMIEKKINPNLVTFNA 335

Query: 483 LLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCG 539
           L+ A   EG   E  + + D       P   TYN++++         +A ++F+ M +  
Sbjct: 336 LIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKD 395

Query: 540 IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEAL 599
             P+  TYN +I      +  +  + L   M   G    T+TYT LI+ L   GD D A 
Sbjct: 396 CFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQ 455

Query: 600 NLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
            +   +  +G+P D++ Y+ +L   C  G+++    + + M +++++ D      +  G 
Sbjct: 456 KVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGM 515

Query: 660 VNCGFHNSAMEALQVLSMRMLCEEVST 686
              G  +   +    LS++ +   V T
Sbjct: 516 CKAGKVDDGWDLFCSLSLKGVKPNVVT 542



 Score = 53.1 bits (126), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 85/460 (18%), Positives = 179/460 (38%), Gaps = 76/460 (16%)

Query: 93  ILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERY 152
           ++N   +  D    +     ME  +I  +   +  ++ +LCK  ++++A NL   + E  
Sbjct: 231 VVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEM-ETK 289

Query: 153 GIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAV 212
           GI P +  Y+S +           A+  L  M  + +  N VT+  L+   V +      
Sbjct: 290 GIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEA 349

Query: 213 HEIWEDYIKH-YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGR 271
            ++++D IK      IF+    V  F     L  A +  + MV+                
Sbjct: 350 EKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVS---------------- 393

Query: 272 LRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTY 331
                       +  P +     +++ +I    +++      +L  +M   GL   + TY
Sbjct: 394 -----------KDCFPDV----VTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTY 438

Query: 332 DGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR 391
              I+ +  D    N  +V K M  + + P    I T S+             LLD +  
Sbjct: 439 TTLIQGLFHDGDCDNAQKVFKQMVSDGVPPD---IMTYSI-------------LLDGL-- 480

Query: 392 CTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGN 450
           C N               K E+A+++F  M++ +++ DI  Y  +           +  +
Sbjct: 481 CNNG--------------KLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWD 526

Query: 451 MFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP 510
           +F  +     +  ++ ++   N   S +  K LL+   A  +++++ +   D   P  + 
Sbjct: 527 LFCSL----SLKGVKPNVVTYNTMISGLCSKRLLQE--AYALLKKMKE---DGPLP-NSG 576

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIM 550
           TYNT++ + +   +   + E+ ++M++C    +A+T  ++
Sbjct: 577 TYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGLV 616


>gi|356522596|ref|XP_003529932.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Glycine max]
          Length = 827

 Score = 93.2 bits (230), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 122/556 (21%), Positives = 235/556 (42%), Gaps = 51/556 (9%)

Query: 116 KEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMV 175
           + + L+   Y +++QA+C+G  L+ AS L+    E  G  P    Y + +GAC +L +  
Sbjct: 251 RGLKLDAASYSIVIQAVCRGSDLDLASKLVEG-DEELGWVPSEGTYAAVIGACVRLGNFG 309

Query: 176 HA-NLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK---HYSLSIFSLR 231
            A  L  +++DSR V  N    T L+K    + ++++   ++++ ++     +++IFS+ 
Sbjct: 310 EALRLKDEMVDSR-VPVNVAVATSLIKGYCVRGDVNSALRLFDEVVEVGVTPNVAIFSV- 367

Query: 232 KFVWSFTRLRDLKSAYETLQHMVALAMMGKLYI-NRTSEGRLRSSRLDIPIPL------- 283
             +   +++ +++ A E    M  + +   ++I N   +G  + + L+    L       
Sbjct: 368 -LIEWCSKIGNVEKANELYTRMKCMGLQPTVFILNFLLKGFRKQNLLENAYLLLDGAVEN 426

Query: 284 ---NALPVMKVLRW--SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAI 338
              + +    VL W      V  AC           L  +M   G+ PS  +Y+  I   
Sbjct: 427 GIASVVTYNIVLLWLCELGKVNEAC----------NLWDKMIGKGITPSLVSYNHMILGH 476

Query: 339 VSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPKP 397
                + +  EV+  + ++ LKP   T   L     K  + + A  + DQ ++    P  
Sbjct: 477 CKKGCMDDAHEVMNGIIESGLKPNAITYTILMEGSFKKGDCEHAFNMFDQMVAAGIVPTD 536

Query: 398 F---SAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQ 454
           +   S     C      E   K+   ++Q   P   TY  +      ++   +EG     
Sbjct: 537 YTFNSIINGLCKVGRVSEARDKLNTFIKQSFIPTSMTYNCI------IDGYVKEG----A 586

Query: 455 VDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTP---LGTPT 511
           +DSA+   ++  +M R+ I  + I+  +L+        +   ++   D K     L    
Sbjct: 587 IDSAE---SVYREMCRSEISPNVITYTSLINGFCKSNKMDLALKMHDDMKRKGLELDITV 643

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           Y T++    + Q+   A + F ++   G+ PN   YNIMI     +   ++A  L   M+
Sbjct: 644 YATLIAGFCKMQDMENACKFFSKLLEVGLTPNTIVYNIMISAYRNLNNMEAALNLHKEMI 703

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
            +        YT+LI  LL  G    AL+L   +   GI  D+ +YN ++   C  G+++
Sbjct: 704 NNKIPCDLKIYTSLIDGLLKEGKLSFALDLYSEMLCRGIVPDIFMYNVLINGLCNHGQLE 763

Query: 632 VIEFIIEQMHQNKVQP 647
               I+++M  N + P
Sbjct: 764 NAGKILKEMDGNNITP 779



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 88/388 (22%), Positives = 158/388 (40%), Gaps = 58/388 (14%)

Query: 289 MKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGM 348
           +K+   S+S VI A  R  +  LA +L+   + LG  PS  TY   I A V    L N  
Sbjct: 253 LKLDAASYSIVIQAVCRGSDLDLASKLVEGDEELGWVPSEGTYAAVIGACVR---LGNFG 309

Query: 349 EVLKIMQQ--NNLKPQDSTIATLSVE--CSKALELDLAEALLDQISRC---TNPKPFSAF 401
           E L++  +  ++  P +  +AT  ++  C +  +++ A  L D++       N   FS  
Sbjct: 310 EALRLKDEMVDSRVPVNVAVATSLIKGYCVRG-DVNSALRLFDEVVEVGVTPNVAIFSVL 368

Query: 402 LAACDTMDKPERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKR 460
           +  C  +   E+A +++ +M+   L+P +     L   F                     
Sbjct: 369 IEWCSKIGNVEKANELYTRMKCMGLQPTVFILNFLLKGF--------------------- 407

Query: 461 INAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLV 520
                    +N ++++++ +         E  I  ++             TYN VL  L 
Sbjct: 408 -------RKQNLLENAYLLLDG-----AVENGIASVV-------------TYNIVLLWLC 442

Query: 521 EAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTM 580
           E  + + A  ++ +M   GI P+  +YN MI       C   A  +++ ++  G  P  +
Sbjct: 443 ELGKVNEACNLWDKMIGKGITPSLVSYNHMILGHCKKGCMDDAHEVMNGIIESGLKPNAI 502

Query: 581 TYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQM 640
           TYT L++     GD + A N+ D +   GI      +N+I+   C+ GR+      +   
Sbjct: 503 TYTILMEGSFKKGDCEHAFNMFDQMVAAGIVPTDYTFNSIINGLCKVGRVSEARDKLNTF 562

Query: 641 HQNKVQPDPSTCHFVFSGYVNCGFHNSA 668
            +    P   T + +  GYV  G  +SA
Sbjct: 563 IKQSFIPTSMTYNCIIDGYVKEGAIDSA 590



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/187 (22%), Positives = 80/187 (42%), Gaps = 1/187 (0%)

Query: 487 LGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAAT 546
           LG  G    L     DS+ P+      +++       + + A+ +F ++   G+ PN A 
Sbjct: 305 LGNFGEALRLKDEMVDSRVPVNVAVATSLIKGYCVRGDVNSALRLFDEVVEVGVTPNVAI 364

Query: 547 YNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVS 606
           ++++I+ CS I   + A+ L + M   G  P       L+K        + A  LLD   
Sbjct: 365 FSVLIEWCSKIGNVEKANELYTRMKCMGLQPTVFILNFLLKGFRKQNLLENAYLLLDGAV 424

Query: 607 LEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHN 666
             GI   V+ YN +L   CE G+++    + ++M    + P   + + +  G+   G  +
Sbjct: 425 ENGIA-SVVTYNIVLLWLCELGKVNEACNLWDKMIGKGITPSLVSYNHMILGHCKKGCMD 483

Query: 667 SAMEALQ 673
            A E + 
Sbjct: 484 DAHEVMN 490



 Score = 46.6 bits (109), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 82/401 (20%), Positives = 148/401 (36%), Gaps = 35/401 (8%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           FS +I  C +  N   A +L  +M+ +GLQP+    +  ++       L N   +L    
Sbjct: 365 FSVLIEWCSKIGNVEKANELYTRMKCMGLQPTVFILNFLLKGFRKQNLLENAYLLLDGAV 424

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPKPFS---AFLAACDT--MD 409
           +N +    +    L   C    +++ A  L D+ I +   P   S     L  C    MD
Sbjct: 425 ENGIASVVTYNIVLLWLCELG-KVNEACNLWDKMIGKGITPSLVSYNHMILGHCKKGCMD 483

Query: 410 KPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEG------NMFSQVDSAKRINA 463
                +     +   L+P+  TY +L      +   +++G      NMF Q+ +A     
Sbjct: 484 DAHEVMN--GIIESGLKPNAITYTIL------MEGSFKKGDCEHAFNMFDQMVAA---GI 532

Query: 464 IEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQ 523
           +  D   N       S+ N L  +G     R+ +  F        + TYN ++   V+  
Sbjct: 533 VPTDYTFN-------SIINGLCKVGRVSEARDKLNTFIKQSFIPTSMTYNCIIDGYVKEG 585

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
               A  ++++M    I PN  TY  +I+          A  +   M R G       Y 
Sbjct: 586 AIDSAESVYREMCRSEISPNVITYTSLINGFCKSNKMDLALKMHDDMKRKGLELDITVYA 645

Query: 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
            LI       D + A      +   G+  + ++YN ++        ++    + ++M  N
Sbjct: 646 TLIAGFCKMQDMENACKFFSKLLEVGLTPNTIVYNIMISAYRNLNNMEAALNLHKEMINN 705

Query: 644 KVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEV 684
           K+  D      +  G +  G  + A++    L   MLC  +
Sbjct: 706 KIPCDLKIYTSLIDGLLKEGKLSFALD----LYSEMLCRGI 742


>gi|255573471|ref|XP_002527661.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532966|gb|EEF34732.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 766

 Score = 93.2 bits (230), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 132/611 (21%), Positives = 242/611 (39%), Gaps = 108/611 (17%)

Query: 31  ANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSR------ASHLLLNLGHAHHS 84
           AN+ E  R+L   +  +  S +  T   +++  C+G   +      A+ +L  +     S
Sbjct: 226 ANQTEFIRSLFEELKDSGPSPNVFTYTIMMNYYCKGSFGKNIDIVKATEVLEEMEMNGES 285

Query: 85  LGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNL 144
                +   ++   R+    F +   R +  +   LN+ CY  ++   C+ G L EA  L
Sbjct: 286 PTVVTYGAYIHGLCRAGCVEFALRLIRDLRIRNQPLNSYCYNAVIHEFCRNGELHEAFEL 345

Query: 145 IYFLGERYGIYPILPVYNSFL-GACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELL--- 200
           +  +   +GI P    Y+  + G C K       +L  +++ S  V  + VTY+ L    
Sbjct: 346 LEDM-RSHGISPTAYSYSILIDGLCKKGQVEKALDLIEEMVQSN-VKPSLVTYSSLFDGL 403

Query: 201 -KLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHM-VALAM 258
            K  + + +LS  H +  +  KH    + S    +  F   RD+ SA + +  M +  ++
Sbjct: 404 CKSGLTEISLSMFHNLGAEGYKH---DVISYNTLINGFVLQRDMGSACKLVHEMRMNGSV 460

Query: 259 MGKLYINRTSEGRLRSSRLDIPIPLNALPVMKV-LRWSFSDVIHAC-------GRTQNSG 310
                 NR   G  +  RLD      AL V  + L+      I  C        R  +  
Sbjct: 461 PNSFTFNRLIHGFCKRQRLD-----KALEVFTIMLKVGVQLNIFTCNIMADEFNREGHFW 515

Query: 311 LAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLS 370
            A +L+ ++Q LG+ P+S+TY+  I+ +  ++      EVL +M +NN+ P         
Sbjct: 516 EALKLINEVQDLGIVPNSYTYNIVIKWLCKEQKTEKAWEVLPVMLKNNVFP--------- 566

Query: 371 VECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDI 429
             C+          L+D  ++ +NP                 +A+ ++AKM +  + P I
Sbjct: 567 --CAIHY-----NTLIDGYAKQSNPT----------------KALLLYAKMLKVGIPPSI 603

Query: 430 RTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGA 489
            TY +L ++F N                            R+ +Q ++   K ++K    
Sbjct: 604 VTYTMLINMFSN----------------------------RSKMQEAYYLFKEMIK---- 631

Query: 490 EGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNI 549
           +G++ + I + C             ++    +  +   A  ++++M   G  PN  TY  
Sbjct: 632 KGLVPDEIIFTC-------------IIAGFCKVGDMKSAWALYEEMSQWGKSPNVVTYTC 678

Query: 550 MIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEG 609
           +ID    I+    A  L + M RD   P  +TYTALI      G  D    + + +   G
Sbjct: 679 LIDGYFKIKRMDKADFLFNKMKRDNVTPDGLTYTALIFGYQSLGYSDRVREMFNEMKENG 738

Query: 610 IPHDVLLYNTI 620
           +  +   Y T+
Sbjct: 739 VFPNYTAYATL 749



 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 91/423 (21%), Positives = 175/423 (41%), Gaps = 47/423 (11%)

Query: 282 PLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSD 341
           PLN+        + ++ VIH   R      A +L+  M+S G+ P++++Y   I  +   
Sbjct: 320 PLNS--------YCYNAVIHEFCRNGELHEAFELLEDMRSHGISPTAYSYSILIDGLCKK 371

Query: 342 RGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALL----------DQISR 391
             +   +++++ M Q+N+KP   T ++L     K+   +++ ++           D IS 
Sbjct: 372 GQVEKALDLIEEMVQSNVKPSLVTYSSLFDGLCKSGLTEISLSMFHNLGAEGYKHDVISY 431

Query: 392 CTNPKPF---SAFLAACDTMDKPE------------RAIKIFAKMRQKLRPDIRTYELLF 436
            T    F       +AC  + +              R I  F K RQ+L   +  + ++ 
Sbjct: 432 NTLINGFVLQRDMGSACKLVHEMRMNGSVPNSFTFNRLIHGFCK-RQRLDKALEVFTIML 490

Query: 437 SLFGNVNAPY---------EEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL 487
            +   +N             EG+ +   ++ K IN ++      N    +I +K L K  
Sbjct: 491 KVGVQLNIFTCNIMADEFNREGHFW---EALKLINEVQDLGIVPNSYTYNIVIKWLCKEQ 547

Query: 488 GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATY 547
             E     L     ++  P     YNT++    +     +A+ ++ +M   GIPP+  TY
Sbjct: 548 KTEKAWEVLPVMLKNNVFPCAI-HYNTLIDGYAKQSNPTKALLLYAKMLKVGIPPSIVTY 606

Query: 548 NIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSL 607
            ++I+  S     + A  L   M++ G  P  + +T +I      GD   A  L + +S 
Sbjct: 607 TMLINMFSNRSKMQEAYYLFKEMIKKGLVPDEIIFTCIIAGFCKVGDMKSAWALYEEMSQ 666

Query: 608 EGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNS 667
            G   +V+ Y  ++    +  R+D  +F+  +M ++ V PD  T   +  GY + G+ + 
Sbjct: 667 WGKSPNVVTYTCLIDGYFKIKRMDKADFLFNKMKRDNVTPDGLTYTALIFGYQSLGYSDR 726

Query: 668 AME 670
             E
Sbjct: 727 VRE 729



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/203 (21%), Positives = 86/203 (42%), Gaps = 16/203 (7%)

Query: 483 LLKALGAEGMIRELIQYFCDSKT---PLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCG 539
           L+K      M+ +    F  ++     L   + N +L+   EA ++     +F+++K  G
Sbjct: 184 LIKVFAENNMLVDAADVFVQARRFGLELNILSCNFLLNCFAEANQTEFIRSLFEELKDSG 243

Query: 540 IPPNAATYNIMID--C-------CSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590
             PN  TY IM++  C         I++    A+ ++  M  +G  P  +TY A I  L 
Sbjct: 244 PSPNVFTYTIMMNYYCKGSFGKNIDIVK----ATEVLEEMEMNGESPTVVTYGAYIHGLC 299

Query: 591 DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650
             G  + AL L+  + +   P +   YN ++ + C  G +     ++E M  + + P   
Sbjct: 300 RAGCVEFALRLIRDLRIRNQPLNSYCYNAVIHEFCRNGELHEAFELLEDMRSHGISPTAY 359

Query: 651 TCHFVFSGYVNCGFHNSAMEALQ 673
           +   +  G    G    A++ ++
Sbjct: 360 SYSILIDGLCKKGQVEKALDLIE 382



 Score = 49.3 bits (116), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 65/160 (40%), Gaps = 7/160 (4%)

Query: 506 PLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASA 565
           P    TY  +++      +   A  +FK+M   G+ P+   +  +I     +   KSA A
Sbjct: 600 PPSIVTYTMLINMFSNRSKMQEAYYLFKEMIKKGLVPDEIIFTCIIAGFCKVGDMKSAWA 659

Query: 566 LVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKAC 625
           L   M + G  P  +TYT LI         D+A  L + +  + +  D L Y  ++    
Sbjct: 660 LYEEMSQWGKSPNVVTYTCLIDGYFKIKRMDKADFLFNKMKRDNVTPDGLTYTALIFGYQ 719

Query: 626 EKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFH 665
             G  D +  +  +M +N V P+       ++ Y   G H
Sbjct: 720 SLGYSDRVREMFNEMKENGVFPN-------YTAYATLGLH 752


>gi|242092012|ref|XP_002436496.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
 gi|241914719|gb|EER87863.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
          Length = 698

 Score = 93.2 bits (230), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 82/357 (22%), Positives = 156/357 (43%), Gaps = 16/357 (4%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A +    M S G+ P+ +TY+  +RA+      +  + VL+ M+     P   T  TL  
Sbjct: 141 ARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEALSVLRDMRGAGCDPNAVTYNTLVA 200

Query: 372 ECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDKPERAIKIFAKM-RQKLR 426
              +A E+D AE L+D + R    KP    F++ +       + E A K+F +M ++ L 
Sbjct: 201 AFCRAGEVDRAERLVDMM-REGGLKPNLVTFNSVVNGICKAGRMEDARKVFDEMVKEGLA 259

Query: 427 PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKA 486
           PD  +Y  L   +  V   +E  ++F+++    R   +   +   ++ H      NL +A
Sbjct: 260 PDGVSYNTLVGGYCKVGCSHEALSVFAEM---TRKGIMPDVVTFTSLIHVMCKAGNLERA 316

Query: 487 LGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAAT 546
           +G   ++RE+ +        +   T+  ++    +      A+   ++M+ C I P+   
Sbjct: 317 VG---LVREMRE----RGLQMNEITFTALIDGFCKKGFLDDALLAVREMRQCRIQPSVVC 369

Query: 547 YNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVS 606
           YN +I+   ++     A  LV  M   G  P  +TY+ ++      GD   A  L   + 
Sbjct: 370 YNALINGYCMVGRMDEARELVREMEAKGVKPDVVTYSTILSAYCKNGDTHSAFQLNQQML 429

Query: 607 LEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
             G+  D + Y+++++  CE+ R+     + + M    +QPD  T   +  G+   G
Sbjct: 430 ENGVLPDAITYSSLIRVLCEEKRLGDAHVLFKNMISLGLQPDEVTYTSLIDGHCKEG 486



 Score = 80.1 bits (196), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 40/176 (22%), Positives = 90/176 (51%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           T+N+V++ + +A     A ++F +M   G+ P+  +YN ++     + C   A ++ + M
Sbjct: 229 TFNSVVNGICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEM 288

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
            R G  P  +T+T+LI ++   G+ + A+ L+  +   G+  + + +  ++   C+KG +
Sbjct: 289 TRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTALIDGFCKKGFL 348

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           D     + +M Q ++QP     + + +GY   G  + A E ++ +  + +  +V T
Sbjct: 349 DDALLAVREMRQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEAKGVKPDVVT 404



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 123/292 (42%), Gaps = 35/292 (11%)

Query: 412 ERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           + A+ +   MR     P+  TY  L + F              +VD A+R+    +DM R
Sbjct: 174 KEALSVLRDMRGAGCDPNAVTYNTLVAAFCRA----------GEVDRAERL----VDMMR 219

Query: 471 -NNIQHSHISMKNLLKALGAEGMIRELIQYF----CDSKTPLGTPTYNTVLHSLVEAQES 525
              ++ + ++  +++  +   G + +  + F     +   P G  +YNT++    +   S
Sbjct: 220 EGGLKPNLVTFNSVVNGICKAGRMEDARKVFDEMVKEGLAPDGV-SYNTLVGGYCKVGCS 278

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
           H A+ +F +M   GI P+  T+  +I         + A  LV  M   G     +T+TAL
Sbjct: 279 HEALSVFAEMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTAL 338

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           I      G  D+AL  +  +    I   V+ YN ++   C  GR+D    ++ +M    V
Sbjct: 339 IDGFCKKGFLDDALLAVREMRQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEAKGV 398

Query: 646 QPDPSTCHFVFSGYVNCGFHNSAMEALQ------VLS--------MRMLCEE 683
           +PD  T   + S Y   G  +SA +  Q      VL         +R+LCEE
Sbjct: 399 KPDVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEE 450



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 112/565 (19%), Positives = 220/565 (38%), Gaps = 47/565 (8%)

Query: 59  IVDALC-RGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKE 117
           +V ALC RG R  A  +L ++  A     A  +  ++    R+ +         MM E  
Sbjct: 163 LVRALCGRGHRKEALSVLRDMRGAGCDPNAVTYNTLVAAFCRAGEVDRAERLVDMMREGG 222

Query: 118 IGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHA 177
           +  N   +  ++  +CK G +E+A  +   +  + G+ P    YN+ +G   K+     A
Sbjct: 223 LKPNLVTFNSVVNGICKAGRMEDARKVFDEM-VKEGLAPDGVSYNTLVGGYCKVGCSHEA 281

Query: 178 NLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLS-AVHEIWEDYIKHYSLSIFSLRKFVWS 236
                 M  + +  + VT+T L+ +     NL  AV  + E   +   ++  +    +  
Sbjct: 282 LSVFAEMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTALIDG 341

Query: 237 FTRLRDLKSAYETLQHM------VALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMK 290
           F +   L  A   ++ M       ++     L       GR+  +R ++   + A  V K
Sbjct: 342 FCKKGFLDDALLAVREMRQCRIQPSVVCYNALINGYCMVGRMDEAR-ELVREMEAKGV-K 399

Query: 291 VLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEV 350
               ++S ++ A  +  ++  A QL  QM   G+ P + TY   IR +  ++ L +   +
Sbjct: 400 PDVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLGDAHVL 459

Query: 351 LKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDK 410
            K M    L+P + T  +L     K   ++ A +L D++                     
Sbjct: 460 FKNMISLGLQPDEVTYTSLIDGHCKEGNVERALSLHDEM--------------------- 498

Query: 411 PERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINA-IEMDMA 469
                     ++  + PD+ TY +L +         E   +  ++   + + A I+ D  
Sbjct: 499 ----------VKAGVLPDVVTYSVLINGLSKSARTKEAQRLLFKLYHEEPVPANIKYDAL 548

Query: 470 RNNIQHSHI-SMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQES 525
               +++ + S+  LLK    +G++ E   + Q   D    L    Y+ ++H        
Sbjct: 549 MRCCRNAELKSVLALLKGFCMKGLMNEADKVYQSILDRNWNLDGSVYSVLIHGHCREGNV 608

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
            +A+   KQM  CG  PN+ +   +I           A  ++  ++            AL
Sbjct: 609 MKALSFHKQMLQCGFAPNSTSTISLIRGLFEKGMVVEADQVIQQLLNCCSLADAEASKAL 668

Query: 586 IKILLDYGDFDEALNLLDLVSLEGI 610
           I + L  G+ D  L++L  ++ +G+
Sbjct: 669 IDLNLKEGNVDAVLDVLHGMARDGL 693



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 100/593 (16%), Positives = 220/593 (37%), Gaps = 110/593 (18%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y ++++ALC  G+ +EA +++  +    G  P    YN+ + A  +   +  A   +D+M
Sbjct: 160 YNILVRALCGRGHRKEALSVLRDM-RGAGCDPNAVTYNTLVAAFCRAGEVDRAERLVDMM 218

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH-YSLSIFSLRKFVWSFTRLRDL 243
               +  N VT+  ++        +    +++++ +K   +    S    V  + ++   
Sbjct: 219 REGGLKPNLVTFNSVVNGICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCS 278

Query: 244 KSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHAC 303
             A      M    +M  +                                +F+ +IH  
Sbjct: 279 HEALSVFAEMTRKGIMPDVV-------------------------------TFTSLIHVM 307

Query: 304 GRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQD 363
            +  N   A  L+ +M+  GLQ +  T+   I        L + +  ++ M+Q  ++P  
Sbjct: 308 CKAGNLERAVGLVREMRERGLQMNEITFTALIDGFCKKGFLDDALLAVREMRQCRIQP-- 365

Query: 364 STIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ 423
                 SV C                        ++A +     + + + A ++  +M  
Sbjct: 366 ------SVVC------------------------YNALINGYCMVGRMDEARELVREMEA 395

Query: 424 K-LRPDIRTYELLFSLF---GNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHIS 479
           K ++PD+ TY  + S +   G+ ++ ++                +   M  N +    I+
Sbjct: 396 KGVKPDVVTYSTILSAYCKNGDTHSAFQ----------------LNQQMLENGVLPDAIT 439

Query: 480 MKNLLKALGAEGMIRELIQYFCDSKTPLGTP----TYNTVLHSLVEAQESHRAMEIFKQM 535
             +L++ L  E  + +    F  +   LG      TY +++    +     RA+ +  +M
Sbjct: 440 YSSLIRVLCEEKRLGDAHVLF-KNMISLGLQPDEVTYTSLIDGHCKEGNVERALSLHDEM 498

Query: 536 KTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDF 595
              G+ P+  TY+++I+  S     K A  L+  +  +   P  + Y AL++   +  + 
Sbjct: 499 VKAGVLPDVVTYSVLINGLSKSARTKEAQRLLFKLYHEEPVPANIKYDALMRCCRN-AEL 557

Query: 596 DEALNLLDLVSLEGIPH----------------DVLLYNTILKKACEKGRIDVIEFIIEQ 639
              L LL    ++G+ +                D  +Y+ ++   C +G +       +Q
Sbjct: 558 KSVLALLKGFCMKGLMNEADKVYQSILDRNWNLDGSVYSVLIHGHCREGNVMKALSFHKQ 617

Query: 640 MHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRS 692
           M Q    P+ ++   +  G    G     +EA QV+   + C  ++  E  ++
Sbjct: 618 MLQCGFAPNSTSTISLIRGLFEKGM---VVEADQVIQQLLNCCSLADAEASKA 667


>gi|224065693|ref|XP_002301924.1| predicted protein [Populus trichocarpa]
 gi|222843650|gb|EEE81197.1| predicted protein [Populus trichocarpa]
          Length = 709

 Score = 93.2 bits (230), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 122/539 (22%), Positives = 222/539 (41%), Gaps = 64/539 (11%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y +++ AL +   L EA    + L ++  + P+   YN+ + ACA+ + +  A   +  M
Sbjct: 172 YSILIHALGQSEKLYEA----FLLSQKQNLTPL--TYNALISACARNNDIEKALNLICRM 225

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWS-----FTR 239
                  + V Y+ +++  +  KN  A   I +   +        +   +W+     F +
Sbjct: 226 REDGYPSDLVNYSLIIRSLM--KNNRANSSILQKIYREIDRDKLEVDVQLWNDIIVGFAK 283

Query: 240 LRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDV 299
             DL  A E L                   G ++ S L +         +  + W   + 
Sbjct: 284 AGDLDKALEFL-------------------GVVQGSGLSVKTA-----TLVTVIWGLGN- 318

Query: 300 IHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNL 359
              CGRT+    AE +  +M+  GLQP +  Y+  +R  V    LR+   V+  M+++ +
Sbjct: 319 ---CGRTEE---AEAIFEEMRDNGLQPRTRAYNALLRGYVKAGLLRDAEFVVSEMERSGV 372

Query: 360 KPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDKPERAI 415
            P + T + L      A   + A  +L ++   +N +P    FS  LA+     + ++  
Sbjct: 373 LPNEQTYSLLIDAYGNAERWESARIVLKEM-EASNVQPNAYVFSRILASYRDKGEWQKTF 431

Query: 416 KIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMD-MARNNI 473
           ++  +M    +RPD   Y +L   FG  N        F ++ S      IE D +  N +
Sbjct: 432 QVLREMEDSGVRPDRIFYNVLIDTFGKFNCLDHAMATFDRMLS----EGIEPDTITWNTL 487

Query: 474 QHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFK 533
              H       K   AE +  E+++       P  T T+N +++S  + +       +  
Sbjct: 488 VDCHCKAG---KHDRAEELFEEMME---KGYLPCNT-TFNIMINSFGDQERWDDVKNLLT 540

Query: 534 QMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYG 593
            M++ G+ PNA TY  +ID       F  A   +  M   G  P +  Y AL+      G
Sbjct: 541 NMRSQGLLPNAVTYTTLIDIYGKSGRFDDAIECLDDMKAAGLKPSSTMYNALLNAYAQRG 600

Query: 594 DFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQ-MHQNKVQPDPST 651
             D+A++    +  +G+   +L  N+++  A  K R DV  F++ Q M +N ++PD  T
Sbjct: 601 LSDQAVSAFWAMRDDGLKPSLLALNSLI-NAFGKDRRDVEAFVVLQYMKENDLKPDVVT 658



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 82/407 (20%), Positives = 168/407 (41%), Gaps = 29/407 (7%)

Query: 308 NSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIA 367
           NS + +++  ++    L+     ++  I        L   +E L ++Q + L  + +T+ 
Sbjct: 251 NSSILQKIYREIDRDKLEVDVQLWNDIIVGFAKAGDLDKALEFLGVVQGSGLSVKTATLV 310

Query: 368 TLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDKPERAIKIFAKM-R 422
           T+          + AEA+ +++ R    +P    ++A L           A  + ++M R
Sbjct: 311 TVIWGLGNCGRTEEAEAIFEEM-RDNGLQPRTRAYNALLRGYVKAGLLRDAEFVVSEMER 369

Query: 423 QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKN 482
             + P+ +TY LL   +GN            + +SA RI   EM+ +  N+Q +      
Sbjct: 370 SGVLPNEQTYSLLIDAYGNA----------ERWESA-RIVLKEMEAS--NVQPNAYVFSR 416

Query: 483 LLKALGAEGMIRELIQYFCDSKTPLGTPT---YNTVLHSLVEAQESHRAMEIFKQMKTCG 539
           +L +   +G  ++  Q   + +     P    YN ++ +  +      AM  F +M + G
Sbjct: 417 ILASYRDKGEWQKTFQVLREMEDSGVRPDRIFYNVLIDTFGKFNCLDHAMATFDRMLSEG 476

Query: 540 IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEAL 599
           I P+  T+N ++DC         A  L   M+  G+ P   T+  +I    D   +D+  
Sbjct: 477 IEPDTITWNTLVDCHCKAGKHDRAEELFEEMMEKGYLPCNTTFNIMINSFGDQERWDDVK 536

Query: 600 NLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
           NLL  +  +G+  + + Y T++    + GR D     ++ M    ++P  +  + + + Y
Sbjct: 537 NLLTNMRSQGLLPNAVTYTTLIDIYGKSGRFDDAIECLDDMKAAGLKPSSTMYNALLNAY 596

Query: 660 VNCGFHNSAMEALQVL-------SMRMLCEEVSTLEEKRSDFEDLIL 699
              G  + A+ A   +       S+  L   ++   + R D E  ++
Sbjct: 597 AQRGLSDQAVSAFWAMRDDGLKPSLLALNSLINAFGKDRRDVEAFVV 643



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 102/472 (21%), Positives = 185/472 (39%), Gaps = 45/472 (9%)

Query: 215 IWEDYIKHY--SLSIFSLRKFVWSFTRLRDLKSAYETLQHMV--ALAMMGKLYINRTSEG 270
           +W   +K    S S   L   V S+ +  +L  +YE L  ++  AL    KLY     E 
Sbjct: 134 LWHSLLKSLCTSSSSIPLAYAVVSWLQKHNLCFSYELLYSILIHALGQSEKLY-----EA 188

Query: 271 RLRSSRLDI-PIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSH 329
            L S + ++ P+  NAL             I AC R  +   A  L+ +M+  G      
Sbjct: 189 FLLSQKQNLTPLTYNAL-------------ISACARNNDIEKALNLICRMREDGYPSDLV 235

Query: 330 TYDGFIRAIVSDRGLRNGM--EVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLD 387
            Y   IR+++ +    + +  ++ + + ++ L+        + V  +KA +LD A   L 
Sbjct: 236 NYSLIIRSLMKNNRANSSILQKIYREIDRDKLEVDVQLWNDIIVGFAKAGDLDKALEFLG 295

Query: 388 QISRC---TNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVN 443
            +               +       + E A  IF +MR   L+P  R Y  L  L G V 
Sbjct: 296 VVQGSGLSVKTATLVTVIWGLGNCGRTEEAEAIFEEMRDNGLQPRTRAYNAL--LRGYVK 353

Query: 444 APYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALG-AEGM--IRELIQYF 500
           A       F           +  +M R+ +  +  +   L+ A G AE     R +++  
Sbjct: 354 AGLLRDAEF-----------VVSEMERSGVLPNEQTYSLLIDAYGNAERWESARIVLKEM 402

Query: 501 CDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCF 560
             S        ++ +L S  +  E  +  ++ ++M+  G+ P+   YN++ID      C 
Sbjct: 403 EASNVQPNAYVFSRILASYRDKGEWQKTFQVLREMEDSGVRPDRIFYNVLIDTFGKFNCL 462

Query: 561 KSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTI 620
             A A    M+ +G  P T+T+  L+      G  D A  L + +  +G       +N +
Sbjct: 463 DHAMATFDRMLSEGIEPDTITWNTLVDCHCKAGKHDRAEELFEEMMEKGYLPCNTTFNIM 522

Query: 621 LKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEAL 672
           +    ++ R D ++ ++  M    + P+  T   +   Y   G  + A+E L
Sbjct: 523 INSFGDQERWDDVKNLLTNMRSQGLLPNAVTYTTLIDIYGKSGRFDDAIECL 574



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 69/325 (21%), Positives = 134/325 (41%), Gaps = 36/325 (11%)

Query: 381 LAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRP-DIRTYELLF-SL 438
           L EA L    +   P  ++A ++AC   +  E+A+ +  +MR+   P D+  Y L+  SL
Sbjct: 185 LYEAFLLSQKQNLTPLTYNALISACARNNDIEKALNLICRMREDGYPSDLVNYSLIIRSL 244

Query: 439 FGNVNAPYE-EGNMFSQVDSAKRINAIEMDMARNN---------------------IQHS 476
             N  A       ++ ++D  K    +E+D+   N                     +Q S
Sbjct: 245 MKNNRANSSILQKIYREIDRDK----LEVDVQLWNDIIVGFAKAGDLDKALEFLGVVQGS 300

Query: 477 HISMKN-----LLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRA 528
            +S+K      ++  LG  G   E   + +   D+     T  YN +L   V+A     A
Sbjct: 301 GLSVKTATLVTVIWGLGNCGRTEEAEAIFEEMRDNGLQPRTRAYNALLRGYVKAGLLRDA 360

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
             +  +M+  G+ PN  TY+++ID       ++SA  ++  M      P    ++ ++  
Sbjct: 361 EFVVSEMERSGVLPNEQTYSLLIDAYGNAERWESARIVLKEMEASNVQPNAYVFSRILAS 420

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
             D G++ +   +L  +   G+  D + YN ++    +   +D      ++M    ++PD
Sbjct: 421 YRDKGEWQKTFQVLREMEDSGVRPDRIFYNVLIDTFGKFNCLDHAMATFDRMLSEGIEPD 480

Query: 649 PSTCHFVFSGYVNCGFHNSAMEALQ 673
             T + +   +   G H+ A E  +
Sbjct: 481 TITWNTLVDCHCKAGKHDRAEELFE 505


>gi|242067349|ref|XP_002448951.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
 gi|241934794|gb|EES07939.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
          Length = 799

 Score = 93.2 bits (230), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 130/620 (20%), Positives = 237/620 (38%), Gaps = 80/620 (12%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYG------IYPILPVYNSFL--GACAKLHSMVH 176
           Y ++++ LC     EEA  L++ + + +G      +     V N F   G   K +    
Sbjct: 164 YTILLKGLCNEKRAEEALELLHMMADDHGRRCPPNVVSYSIVINGFFTEGQVDKPY---- 219

Query: 177 ANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH-YSLSIFSLRKFVW 235
            NL L+++D R +  + VTYT ++      +       +++  I + +  + ++    + 
Sbjct: 220 -NLFLEMID-RGIPPDVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGFKPNNYTYNCLIH 277

Query: 236 SFTRLRDLKSAYETLQHMVALAM------MGKLYINRTSEGRLRSSRL--DIPIPLNALP 287
            +  +   K   + L+ M A  +       G L       GR R +R   D  I     P
Sbjct: 278 GYLSIGKWKEVVQMLEEMSARGLKPDCYTYGSLLNYLCKNGRCREARFFFDSMIRKGIKP 337

Query: 288 VMKVLRWSFSDVIHACGRTQNSGLAE--QLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLR 345
            +     ++  +IH  G      L+E    +  M   GL P  H ++ F  A      + 
Sbjct: 338 KVS----TYGILIH--GYATKGALSEMHSFLDLMVENGLSPDHHIFNIFFSAYAKCGMID 391

Query: 346 NGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPK--PFSAFL 402
             M++   M+Q+ L P       L     K   +D AE   +Q I+    P    F++ +
Sbjct: 392 KAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLV 451

Query: 403 AACDTMDKPERAIKIFAKMRQK------------------------------------LR 426
               T+DK ERA ++  +M  +                                    +R
Sbjct: 452 YGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVR 511

Query: 427 PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKA 486
           PD  +Y  L S +       E   +F   D    I     ++  N + H + S   +  A
Sbjct: 512 PDAFSYTPLISGYCLTGRTDEAEKVF---DGMVSIGLSPTEVTYNTLLHGYCSASRIDDA 568

Query: 487 LGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAAT 546
                + RE+++      TP G  TYNT+LH L + +    A E++  M   G   +  T
Sbjct: 569 YC---LFREMLR---KGVTP-GVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKCDIYT 621

Query: 547 YNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVS 606
           YNI+++      C   A  +   +   G     +T+T +I  LL  G  ++A++L   + 
Sbjct: 622 YNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIP 681

Query: 607 LEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHN 666
             G+  +V+ Y  + +   E+G ++  + +   M +N   P+    + +    ++ G  +
Sbjct: 682 ANGLVPNVVTYRLVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDIS 741

Query: 667 SAMEALQVLSMRMLCEEVST 686
            A   L  L  R    E ST
Sbjct: 742 RAGAYLSKLDERNFSVEAST 761



 Score = 65.1 bits (157), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 74/328 (22%), Positives = 124/328 (37%), Gaps = 73/328 (22%)

Query: 374 SKALELDLAEALLDQISRCTNPKPFSAF--------LAACDTMDKPERAIKIFAKM---- 421
           S++L LD A  L D++     P    AF         A C +    E A+  F +M    
Sbjct: 25  SRSLGLDDALKLFDELLHHARPASVRAFNHLLTAVSRARCSS--ASELAVSHFNRMVREC 82

Query: 422 RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMK 481
             K+ P++ TY +L   F  +         F  +              +   +  HI++ 
Sbjct: 83  SDKVAPNLCTYSILIGRFCRMGHLEHGFAAFGLI-------------LKTGWRMDHIAIN 129

Query: 482 NLLKALGAEGMIRELIQYFCDSKTPLG----TPTYNTVLHSLVEAQESHRAMEIFKQM-- 535
            LLK L     + E +         LG    T +Y  +L  L   + +  A+E+   M  
Sbjct: 130 QLLKGLCHGKRVGEAMDVLLQRMPELGCMPDTVSYTILLKGLCNEKRAEEALELLHMMAD 189

Query: 536 ---KTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDY 592
              + C  PPN  +Y+I+I+                     GF+ +              
Sbjct: 190 DHGRRC--PPNVVSYSIVIN---------------------GFFTE-------------- 212

Query: 593 GDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTC 652
           G  D+  NL   +   GIP DV+ Y T++   C+    D  E + +QM  N  +P+  T 
Sbjct: 213 GQVDKPYNLFLEMIDRGIPPDVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGFKPNNYTY 272

Query: 653 HFVFSGYVNCGFHNSAMEALQVLSMRML 680
           + +  GY++ G     ++ L+ +S R L
Sbjct: 273 NCLIHGYLSIGKWKEVVQMLEEMSARGL 300


>gi|356544378|ref|XP_003540629.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Glycine max]
          Length = 903

 Score = 93.2 bits (230), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 141/680 (20%), Positives = 262/680 (38%), Gaps = 58/680 (8%)

Query: 44  MGLNEESISKATQMQIVDALCRGER-SRASHLLLNLGHAHHSLGADDFFH---ILNYCAR 99
           M  N   +S  T   ++  LC+G+R S A  +  +LG     L AD   +   +L +C  
Sbjct: 251 MEANGFDLSIVTYNVLIHGLCKGDRVSEAVEVKRSLGG--KGLAADVVTYCTLVLGFCRL 308

Query: 100 SPDPLFVMETWRMMEEKEIGLN--NKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPI 157
                F      M E  E+G +        ++  L K G +++A  L+  +G R+G  P 
Sbjct: 309 QQ---FEAGIQLMDEMVELGFSPTEAAVSGLVDGLRKQGKIDDAYELVVKVG-RFGFVPN 364

Query: 158 LPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWE 217
           L VYN+ + +  K   +  A L    M    +  N +TY+ L+        L      ++
Sbjct: 365 LFVYNALINSLCKGGDLDKAELLYSNMSLMNLRPNGITYSILIDSFCRSGRLDVAISYFD 424

Query: 218 DYIKH-YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSR 276
             I+     ++++    +    +  DL +A      M           N+  E    +  
Sbjct: 425 RMIQDGIGETVYAYNSLINGQCKFGDLSAAESLFIEMT----------NKGVEPTATTFT 474

Query: 277 LDIPIPLNALPVMKVLR--------------WSFSDVIHACGRTQNSGLAEQLMLQMQSL 322
             I      L V K  +              ++F+ +I     T     A +L  ++   
Sbjct: 475 SLISGYCKDLQVQKAFKLYNKMIDNGITPNVYTFTALISGLCSTNKMAEASELFDELVER 534

Query: 323 GLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLA 382
            ++P+  TY+  I     D  +    E+L+ M Q  L P   T   L         +  A
Sbjct: 535 KIKPTEVTYNVLIEGYCRDGKIDKAFELLEDMHQKGLVPDTYTYRPLISGLCSTGRVSKA 594

Query: 383 EALLDQISRCT---NPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSL 438
           +  +D + +     N   +SA L       +   A+    +M Q+ +  D+  + +L   
Sbjct: 595 KDFIDDLHKQNVKLNEMCYSALLHGYCQEGRLMEALSASCEMIQRGINMDLVCHAVLID- 653

Query: 439 FGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQ 498
            G +  P             K    +  DM    ++  ++   +++     EG  ++  +
Sbjct: 654 -GALKQP-----------DRKTFFDLLKDMHDQGLRPDNVIYTSMIDTYSKEGSFKKAFE 701

Query: 499 YFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCS 555
            +    T    P   TY  +++ L +A E  RA  +FK+M+   +PPN+ TY   +D  +
Sbjct: 702 CWDLMVTEECFPNVVTYTALMNGLCKAGEMDRAGLLFKRMQAANVPPNSITYGCFLDNLT 761

Query: 556 IIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVL 615
                K A  L   M++ G    T+T+  +I+     G F EA  +L  ++  GI  D +
Sbjct: 762 KEGNMKEAIGLHHAMLK-GLLANTVTHNIIIRGFCKLGRFHEATKVLSEMTENGIFPDCV 820

Query: 616 LYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
            Y+T++ + C  G +     + + M    ++PD    + +  G    G  + A E    +
Sbjct: 821 TYSTLIYEYCRSGNVGASVKLWDTMLNRGLEPDLVAYNLLIYGCCVNGELDKAFELRDDM 880

Query: 676 SMRMLCEEVSTLEEKRSDFE 695
             R +  +   L++K + FE
Sbjct: 881 LRRGIIPDNKYLQKKGTIFE 900



 Score = 87.0 bits (214), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 123/592 (20%), Positives = 234/592 (39%), Gaps = 40/592 (6%)

Query: 102 DPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVY 161
           D L   E  R ME     L+   Y +++  LCKG  + EA  +   LG + G+   +  Y
Sbjct: 240 DFLRAKEKIRWMEANGFDLSIVTYNVLIHGLCKGDRVSEAVEVKRSLGGK-GLAADVVTY 298

Query: 162 NSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK 221
            + +    +L         +D M        E   + L+     Q  +   +E+     +
Sbjct: 299 CTLVLGFCRLQQFEAGIQLMDEMVELGFSPTEAAVSGLVDGLRKQGKIDDAYELVVKVGR 358

Query: 222 H-YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMM-GKLYINRTSEGRLRSSRLDI 279
             +  ++F     + S  +  DL  A     +M  + +    +  +   +   RS RLD+
Sbjct: 359 FGFVPNLFVYNALINSLCKGGDLDKAELLYSNMSLMNLRPNGITYSILIDSFCRSGRLDV 418

Query: 280 PIPLNALPVMKVLR---WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIR 336
            I      +   +    ++++ +I+   +  +   AE L ++M + G++P++ T+   I 
Sbjct: 419 AISYFDRMIQDGIGETVYAYNSLINGQCKFGDLSAAESLFIEMTNKGVEPTATTFTSLIS 478

Query: 337 AIVSDRGLRNGMEVLKIMQQNNLKPQDSTI-ATLSVECSKALELDLAEALLDQISRCTNP 395
               D  ++   ++   M  N + P   T  A +S  CS     + +E   + + R   P
Sbjct: 479 GYCKDLQVQKAFKLYNKMIDNGITPNVYTFTALISGLCSTNKMAEASELFDELVERKIKP 538

Query: 396 K--PFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMF 452
               ++  +       K ++A ++   M QK L PD  TY  L S             + 
Sbjct: 539 TEVTYNVLIEGYCRDGKIDKAFELLEDMHQKGLVPDTYTYRPLIS------------GLC 586

Query: 453 SQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCD---SKTPLGT 509
           S    +K  + I+ D+ + N++ + +    LL     EG + E +   C+       +  
Sbjct: 587 STGRVSKAKDFID-DLHKQNVKLNEMCYSALLHGYCQEGRLMEALSASCEMIQRGINMDL 645

Query: 510 PTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSM 569
             +  ++   ++  +     ++ K M   G+ P+   Y  MID  S    FK A     +
Sbjct: 646 VCHAVLIDGALKQPDRKTFFDLLKDMHDQGLRPDNVIYTSMIDTYSKEGSFKKAFECWDL 705

Query: 570 MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
           MV +  +P  +TYTAL+  L   G+ D A  L   +    +P + + Y   L    ++G 
Sbjct: 706 MVTEECFPNVVTYTALMNGLCKAGEMDRAGLLFKRMQAANVPPNSITYGCFLDNLTKEGN 765

Query: 630 ----IDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG-FHNSAMEALQVLS 676
               I +   +++ +  N V     T + +  G+   G FH    EA +VLS
Sbjct: 766 MKEAIGLHHAMLKGLLANTV-----THNIIIRGFCKLGRFH----EATKVLS 808



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 85/423 (20%), Positives = 167/423 (39%), Gaps = 35/423 (8%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ +IH   +      A ++   +   GL     TY   +      +    G++++  M
Sbjct: 262 TYNVLIHGLCKGDRVSEAVEVKRSLGGKGLAADVVTYCTLVLGFCRLQQFEAGIQLMDEM 321

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKP 411
            +    P ++ ++ L     K  ++D A  L+ ++ R     N   ++A + +       
Sbjct: 322 VELGFSPTEAAVSGLVDGLRKQGKIDDAYELVVKVGRFGFVPNLFVYNALINSLCKGGDL 381

Query: 412 ERAIKIFAKMR-QKLRPDIRTYELLFSLF---GNVNAPYEEGNMFSQVDSAKRINAIEMD 467
           ++A  +++ M    LRP+  TY +L   F   G ++         S  D   +    E  
Sbjct: 382 DKAELLYSNMSLMNLRPNGITYSILIDSFCRSGRLDVA------ISYFDRMIQDGIGETV 435

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHR 527
            A N++ +      +L     AE +  E+         P  T T+ +++    +  +  +
Sbjct: 436 YAYNSLINGQCKFGDLS---AAESLFIEMTN---KGVEPTAT-TFTSLISGYCKDLQVQK 488

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A +++ +M   GI PN  T+  +I           AS L   +V     P  +TY  LI+
Sbjct: 489 AFKLYNKMIDNGITPNVYTFTALISGLCSTNKMAEASELFDELVERKIKPTEVTYNVLIE 548

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
                G  D+A  LL+ +  +G+  D   Y  ++   C  GR+   +  I+ +H+  V+ 
Sbjct: 549 GYCRDGKIDKAFELLEDMHQKGLVPDTYTYRPLISGLCSTGRVSKAKDFIDDLHKQNVKL 608

Query: 648 DPSTCHFVFSGYVNCGFHNSAMEALQV--------LSMRMLCEEV----STLEEKRSDFE 695
           +      +  GY   G     MEAL          ++M ++C  V    +  +  R  F 
Sbjct: 609 NEMCYSALLHGYCQEG---RLMEALSASCEMIQRGINMDLVCHAVLIDGALKQPDRKTFF 665

Query: 696 DLI 698
           DL+
Sbjct: 666 DLL 668



 Score = 66.6 bits (161), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 58/263 (22%), Positives = 109/263 (41%), Gaps = 15/263 (5%)

Query: 473 IQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIF 532
           +  S   +K+ L+A       +E I++   +   L   TYN ++H L +      A+E+ 
Sbjct: 231 VVRSMCELKDFLRA-------KEKIRWMEANGFDLSIVTYNVLIHGLCKGDRVSEAVEVK 283

Query: 533 KQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDY 592
           + +   G+  +  TY  ++     ++ F++   L+  MV  GF P     + L+  L   
Sbjct: 284 RSLGGKGLAADVVTYCTLVLGFCRLQQFEAGIQLMDEMVELGFSPTEAAVSGLVDGLRKQ 343

Query: 593 GDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTC 652
           G  D+A  L+  V   G   ++ +YN ++   C+ G +D  E +   M    ++P+  T 
Sbjct: 344 GKIDDAYELVVKVGRFGFVPNLFVYNALINSLCKGGDLDKAELLYSNMSLMNLRPNGITY 403

Query: 653 HFVFSGYVNCGFHNSAMEALQVLSMRMLCEEV---STLEEKRSDFEDLILAEDSEAESRI 709
             +   +   G  + A+     +    + E V   ++L   +  F DL     S AES  
Sbjct: 404 SILIDSFCRSGRLDVAISYFDRMIQDGIGETVYAYNSLINGQCKFGDL-----SAAESLF 458

Query: 710 LQFCEDSNENLAFTAALLQLRWC 732
           ++      E  A T   L   +C
Sbjct: 459 IEMTNKGVEPTATTFTSLISGYC 481



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 71/333 (21%), Positives = 127/333 (38%), Gaps = 52/333 (15%)

Query: 350 VLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPKPFSAFLAACDTM 408
           ++K+M  NNL P+  T++ L     K  +      L D+ ++    P P++     C  +
Sbjct: 177 IVKLMFANNLLPEVRTLSALLNGLLKVRKFITVWELFDESVNAGVRPDPYT-----CSAV 231

Query: 409 DKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
            +    +K F + ++K+R                   + E N F    S    N +   +
Sbjct: 232 VRSMCELKDFLRAKEKIR-------------------WMEANGFDL--SIVTYNVLIHGL 270

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRELIQY------FC------------DSKTPLGTP 510
            + +     + +K   ++LG +G+  +++ Y      FC            D    LG  
Sbjct: 271 CKGDRVSEAVEVK---RSLGGKGLAADVVTYCTLVLGFCRLQQFEAGIQLMDEMVELGFS 327

Query: 511 TYNTVLHSLVEAQESH----RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASAL 566
                +  LV+          A E+  ++   G  PN   YN +I+          A  L
Sbjct: 328 PTEAAVSGLVDGLRKQGKIDDAYELVVKVGRFGFVPNLFVYNALINSLCKGGDLDKAELL 387

Query: 567 VSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE 626
            S M      P  +TY+ LI      G  D A++  D +  +GI   V  YN+++   C+
Sbjct: 388 YSNMSLMNLRPNGITYSILIDSFCRSGRLDVAISYFDRMIQDGIGETVYAYNSLINGQCK 447

Query: 627 KGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
            G +   E +  +M    V+P  +T   + SGY
Sbjct: 448 FGDLSAAESLFIEMTNKGVEPTATTFTSLISGY 480


>gi|356529513|ref|XP_003533335.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 794

 Score = 93.2 bits (230), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 136/664 (20%), Positives = 253/664 (38%), Gaps = 65/664 (9%)

Query: 59  IVDALC-RGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKE 117
           ++  LC +G+   A H    L      L    +  ++N   R  D    ++  R ++ + 
Sbjct: 69  LIKGLCLKGQVKEALHFHDKLLAQGFQLNQVSYATLINGVCRIGDTRAAIKFLRKIDGRL 128

Query: 118 IGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHA 177
              N + Y  ++ ALCK   + EA  L   +  + GI   +  Y++ +     +  +  A
Sbjct: 129 AKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVK-GISANVVTYSTLIYGFCIVGKLKEA 187

Query: 178 NLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSF 237
              L++M  + +  N  TY  L+     +  +     +    +K        ++  V ++
Sbjct: 188 LGLLNVMVLKTINPNVCTYNILVDALCKEGKVKEAKSVLAVMLKA------CVKSNVITY 241

Query: 238 TRLRD---LKSAYETLQHMV-ALAMMGKL----YINRTSEGRLRSSRLDIPIPLNALPVM 289
           + L D   L    +  QH+  A+++MG        N    G  +  R+D    LN    M
Sbjct: 242 STLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHSYNIMINGFCKIKRVDKA--LNLFKEM 299

Query: 290 KVLRW----SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLR 345
            + R+     F+ ++ +  + ++   A  L  +++  G+QP   T +  I        + 
Sbjct: 300 ILSRFPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLFTLNILINCFCHMGQIT 359

Query: 346 NGMEVLKIMQQNNLKPQDSTIATL------SVECSKALELD---LAEAL-LDQISRCTNP 395
            G  VL  + +    P   T+ TL        +  KAL      LA+   L+Q+S     
Sbjct: 360 FGFSVLAKILKRGYPPSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVS----- 414

Query: 396 KPFSAFLAACDTMDKPERAIKIFAKMRQKL-RPDIRTYELLFSLFGNVNAPYEEGNMFSQ 454
             ++  +     +     AIK+  K+  +L +P++  Y  +           E   +FS+
Sbjct: 415 --YATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSE 472

Query: 455 ----------------------VDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGM 492
                                 V   K    +  +M    I     +   L+ ALG EG 
Sbjct: 473 MTVKGISADVVTYSTLIYGFCIVGKLKEAIGLLNEMVLKTINPDVRTYTILVDALGKEGK 532

Query: 493 IRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNI 549
           ++E              P   TYNT+++  +   E  +A  +F  M   G+ P+  TY I
Sbjct: 533 VKEAKSVLAVMLKACVKPDVFTYNTLMNGYLLVYEVKKAQHVFNAMSLMGVTPDVHTYTI 592

Query: 550 MIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEG 609
           +I+     +    A  L   M +    P T+TY++L+  L   G      +L+D +   G
Sbjct: 593 LINGFCKSKMVDEALNLFKEMHQKNMVPDTVTYSSLVDGLCKSGRISYVWDLIDEMRDRG 652

Query: 610 IPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAM 669
            P DV+ YN+++   C+ G +D    +  +M    ++P+  T   +  G    G    A 
Sbjct: 653 QPADVITYNSLIDGLCKNGHLDKAIALFNKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQ 712

Query: 670 EALQ 673
           E  Q
Sbjct: 713 EVFQ 716



 Score = 62.8 bits (151), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 128/631 (20%), Positives = 240/631 (38%), Gaps = 98/631 (15%)

Query: 105 FVMETWRMMEE---KEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVY 161
            V E + +  E   K I  N   Y  ++   C  G L+EA  L+  +  +  I P +  Y
Sbjct: 148 LVSEAYGLFSEMTVKGISANVVTYSTLIYGFCIVGKLKEALGLLNVMVLK-TINPNVCTY 206

Query: 162 NSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLK--LAVWQKNLSAVHEIWEDY 219
           N  + A  K   +  A   L +M    V  N +TY+ L+     V++    A H      
Sbjct: 207 NILVDALCKEGKVKEAKSVLAVMLKACVKSNVITYSTLMDGYFLVYEVK-KAQHVFNAMS 265

Query: 220 IKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRT--SEGRLR---- 273
           +   +  + S    +  F +++ +  A    + M+       +  N+   S  +++    
Sbjct: 266 LMGVTPDVHSYNIMINGFCKIKRVDKALNLFKEMILSRFPPIIQFNKILDSFAKMKHYST 325

Query: 274 ----SSRLDIP----------IPLNALPVMKVLRWSFSDVIHACGR-------TQNSGLA 312
               S RL++           I +N    M  + + FS +     R       T N+ L 
Sbjct: 326 AVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFGFSVLAKILKRGYPPSTVTLNT-LI 384

Query: 313 EQLMLQMQ------------SLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLK 360
           + L L+ Q            + G Q +  +Y   I  +      R  +++L+ +     K
Sbjct: 385 KGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRGAIKLLRKIDGRLTK 444

Query: 361 PQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKPERAIKI 417
           P     +T+     K   +  A  L  +++      +   +S  +     + K + AI +
Sbjct: 445 PNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIVGKLKEAIGL 504

Query: 418 FAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMD-------MA 469
             +M  K + PD+RTY +L    G      +EG    +V  AK + A+ +          
Sbjct: 505 LNEMVLKTINPDVRTYTILVDALG------KEG----KVKEAKSVLAVMLKACVKPDVFT 554

Query: 470 RNNIQHSHI------SMKNLLKALGAEGMIRE------LIQYFCDSK------------- 504
            N + + ++        +++  A+   G+  +      LI  FC SK             
Sbjct: 555 YNTLMNGYLLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKSKMVDEALNLFKEMH 614

Query: 505 ----TPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCF 560
                P  T TY++++  L ++       ++  +M+  G P +  TYN +ID        
Sbjct: 615 QKNMVP-DTVTYSSLVDGLCKSGRISYVWDLIDEMRDRGQPADVITYNSLIDGLCKNGHL 673

Query: 561 KSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTI 620
             A AL + M   G  P T T+T L+  L   G   +A  +   +  +G   DV +YN +
Sbjct: 674 DKAIALFNKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLDVYIYNVM 733

Query: 621 LKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
           +   C++G ++    ++ +M +N   P+  T
Sbjct: 734 IYGHCKQGLLEEALTMLSKMEENGCIPNAVT 764



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 98/514 (19%), Positives = 198/514 (38%), Gaps = 59/514 (11%)

Query: 184 MDSRMVGKNEVTYTELL-KLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRD 242
           +D R+   N   Y  ++  L  +Q    A     E  +K  S ++ +    ++ F  +  
Sbjct: 124 IDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGISANVVTYSTLIYGFCIVGK 183

Query: 243 LKSAYETLQHMVA------LAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSF 296
           LK A   L  MV       +     L      EG+++ ++  + + L A     V+  ++
Sbjct: 184 LKEALGLLNVMVLKTINPNVCTYNILVDALCKEGKVKEAKSVLAVMLKACVKSNVI--TY 241

Query: 297 SDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQ 356
           S ++           A+ +   M  +G+ P  H+Y+  I          NG   +K    
Sbjct: 242 STLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHSYNIMI----------NGFCKIK---- 287

Query: 357 NNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIK 416
                             KAL L   E +L   SR      F+  L +   M     A+ 
Sbjct: 288 ---------------RVDKALNL-FKEMIL---SRFPPIIQFNKILDSFAKMKHYSTAVS 328

Query: 417 IFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQH 475
           +  ++  K ++PD+ T  +L              N F  +       ++   + +     
Sbjct: 329 LSHRLELKGIQPDLFTLNILI-------------NCFCHMGQITFGFSVLAKILKRGYPP 375

Query: 476 SHISMKNLLKALGAEGMIRELIQY---FCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIF 532
           S +++  L+K L  +G +++ + +          L   +Y T+++ + +  ++  A+++ 
Sbjct: 376 STVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRGAIKLL 435

Query: 533 KQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDY 592
           +++      PN   Y+ +ID     +    A  L S M   G     +TY+ LI      
Sbjct: 436 RKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIV 495

Query: 593 GDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTC 652
           G   EA+ LL+ + L+ I  DV  Y  ++    ++G++   + ++  M +  V+PD  T 
Sbjct: 496 GKLKEAIGLLNEMVLKTINPDVRTYTILVDALGKEGKVKEAKSVLAVMLKACVKPDVFTY 555

Query: 653 HFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           + + +GY+       A      +S+  +  +V T
Sbjct: 556 NTLMNGYLLVYEVKKAQHVFNAMSLMGVTPDVHT 589



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 88/216 (40%), Gaps = 3/216 (1%)

Query: 474 QHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPT---YNTVLHSLVEAQESHRAME 530
           Q + +S   L+  +   G  R  I+        L  P    Y+T++ +L + Q    A  
Sbjct: 409 QLNQVSYATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYG 468

Query: 531 IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590
           +F +M   GI  +  TY+ +I    I+   K A  L++ MV     P   TYT L+  L 
Sbjct: 469 LFSEMTVKGISADVVTYSTLIYGFCIVGKLKEAIGLLNEMVLKTINPDVRTYTILVDALG 528

Query: 591 DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650
             G   EA ++L ++    +  DV  YNT++        +   + +   M    V PD  
Sbjct: 529 KEGKVKEAKSVLAVMLKACVKPDVFTYNTLMNGYLLVYEVKKAQHVFNAMSLMGVTPDVH 588

Query: 651 TCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           T   + +G+      + A+   + +  + +  +  T
Sbjct: 589 TYTILINGFCKSKMVDEALNLFKEMHQKNMVPDTVT 624


>gi|224123236|ref|XP_002330266.1| predicted protein [Populus trichocarpa]
 gi|222871301|gb|EEF08432.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score = 93.2 bits (230), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 102/424 (24%), Positives = 179/424 (42%), Gaps = 70/424 (16%)

Query: 300 IHACG-------RTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
           +HAC        ++  +  A  L  +M  + ++ S  T++  I  +  +  L+   E + 
Sbjct: 156 VHACNDMLSLFLKSNRTEKAWVLYAEMFRMRIKSSVVTFNIMINVLCKEGKLKKAKEFIG 215

Query: 353 IMQQNNLKPQDSTIATL-SVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDT 407
           +M+   +KP   T  T+    CS+   ++ A  + D + +C   KP    + +F++    
Sbjct: 216 LMEALGIKPNVVTYNTIIHGYCSRG-RVEGARMIFD-LMKCRGVKPDSYTYGSFISGMCK 273

Query: 408 MDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM 466
             K E A  +  KM++  LRP   TY  L   + N      +GN+    D   +      
Sbjct: 274 EGKLEEASGMLEKMKEIGLRPTAVTYNTLIDGYCN------KGNLEMAFDYRDK------ 321

Query: 467 DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESH 526
                                    M+RE +        P    TYN ++H+L    +  
Sbjct: 322 -------------------------MVREGLM-------PT-VSTYNMLIHALFLDCKMD 348

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRC--FKSASALVSMMVRDGFYPQTMTYTA 584
            A  I K+M   G+ P++ TYNI+I+     RC   K A  L   M+  G  P  +TYT+
Sbjct: 349 EADGIIKEMSEKGLVPDSVTYNILIN--GYCRCGNVKKAFTLHDEMISKGIQPTRVTYTS 406

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
           LI +L   G   +A +L + +  +GI  D++++N ++   C  G +D    ++++M Q K
Sbjct: 407 LIYVLSKRGRMKQADDLFEKIVRKGIFPDLIMFNALIDGHCANGNMDRAFAMLKEMDQMK 466

Query: 645 VQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEE---VSTL---EEKRSDFEDLI 698
           V PD  T + +  G    G   +A E ++ +  R +  +    +TL     KR D +D  
Sbjct: 467 VVPDEVTFNTLMQGRCREGKVEAARELIEEMKSRGIKPDHISYNTLISGYSKRGDMKDAF 526

Query: 699 LAED 702
              D
Sbjct: 527 RVRD 530



 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 109/515 (21%), Positives = 208/515 (40%), Gaps = 62/515 (12%)

Query: 160 VYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDY 219
           +Y+  + AC +L     A  C D+M  + V  +     ++L L +     +   + W  Y
Sbjct: 123 LYDLLIRACCELKRGDDAFECFDMMKGKGVIPHVHACNDMLSLFLKS---NRTEKAWVLY 179

Query: 220 IKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDI 279
            + + + I                KS+  T   M+ +            EG+L+ ++  I
Sbjct: 180 AEMFRMRI----------------KSSVVTFNIMINVL---------CKEGKLKKAKEFI 214

Query: 280 PIPLNALPVMKVLRWSFSDVIHA-CGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAI 338
            + + AL + K    +++ +IH  C R +  G A  +   M+  G++P S+TY  FI  +
Sbjct: 215 GL-MEALGI-KPNVVTYNTIIHGYCSRGRVEG-ARMIFDLMKCRGVKPDSYTYGSFISGM 271

Query: 339 VSDRGLRNGMEVLKIMQQNNLKPQDSTIATL-SVECSKALELDLAEALLDQISR---CTN 394
             +  L     +L+ M++  L+P   T  TL    C+K   L++A    D++ R      
Sbjct: 272 CKEGKLEEASGMLEKMKEIGLRPTAVTYNTLIDGYCNKG-NLEMAFDYRDKMVREGLMPT 330

Query: 395 PKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFS 453
              ++  + A     K + A  I  +M +K L PD  TY +L              N + 
Sbjct: 331 VSTYNMLIHALFLDCKMDEADGIIKEMSEKGLVPDSVTYNILI-------------NGYC 377

Query: 454 QVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPT-- 511
           +  + K+   +  +M    IQ + ++  +L+  L   G +++    F         P   
Sbjct: 378 RCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYVLSKRGRMKQADDLFEKIVRKGIFPDLI 437

Query: 512 -YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRC----FKSASAL 566
            +N ++          RA  + K+M    + P+  T+N ++      RC     ++A  L
Sbjct: 438 MFNALIDGHCANGNMDRAFAMLKEMDQMKVVPDEVTFNTLMQG----RCREGKVEAAREL 493

Query: 567 VSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE 626
           +  M   G  P  ++Y  LI      GD  +A  + D +   G    +L YN +++  C+
Sbjct: 494 IEEMKSRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMLSIGFNPTLLTYNALIQGLCK 553

Query: 627 KGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVN 661
               D  E ++++M    + P+ +T   +  G  N
Sbjct: 554 NEEGDHAEQLLKEMISKGITPNDNTYLSLIEGIGN 588



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 92/216 (42%), Gaps = 6/216 (2%)

Query: 493 IRELIQYFCDSKTPLGTPTY---NTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNI 549
           IRE+      ++  LG  TY   + ++ +  E +    A E F  MK  G+ P+    N 
Sbjct: 102 IREVFNELGVARGVLGIKTYVLYDLLIRACCELKRGDDAFECFDMMKGKGVIPHVHACND 161

Query: 550 MIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEG 609
           M+         + A  L + M R       +T+  +I +L   G   +A   + L+   G
Sbjct: 162 MLSLFLKSNRTEKAWVLYAEMFRMRIKSSVVTFNIMINVLCKEGKLKKAKEFIGLMEALG 221

Query: 610 IPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSA- 668
           I  +V+ YNTI+   C +GR++    I + M    V+PD  T     SG    G    A 
Sbjct: 222 IKPNVVTYNTIIHGYCSRGRVEGARMIFDLMKCRGVKPDSYTYGSFISGMCKEGKLEEAS 281

Query: 669 --MEALQVLSMRMLCEEVSTLEEKRSDFEDLILAED 702
             +E ++ + +R      +TL +   +  +L +A D
Sbjct: 282 GMLEKMKEIGLRPTAVTYNTLIDGYCNKGNLEMAFD 317



 Score = 42.7 bits (99), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 47/250 (18%), Positives = 107/250 (42%), Gaps = 6/250 (2%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y +++ AL     ++EA  +I  + E+ G+ P    YN  +    +  ++  A    D M
Sbjct: 334 YNMLIHALFLDCKMDEADGIIKEMSEK-GLVPDSVTYNILINGYCRCGNVKKAFTLHDEM 392

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSL-SIFSLRKFVWSFTRLRDL 243
            S+ +    VTYT L+ +   +  +    +++E  ++      +      +       ++
Sbjct: 393 ISKGIQPTRVTYTSLIYVLSKRGRMKQADDLFEKIVRKGIFPDLIMFNALIDGHCANGNM 452

Query: 244 KSAYETLQHMVALAMM-GKLYINRTSEGRLRSSRLDIP---IPLNALPVMKVLRWSFSDV 299
             A+  L+ M  + ++  ++  N   +GR R  +++     I       +K    S++ +
Sbjct: 453 DRAFAMLKEMDQMKVVPDEVTFNTLMQGRCREGKVEAARELIEEMKSRGIKPDHISYNTL 512

Query: 300 IHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNL 359
           I    +  +   A ++  +M S+G  P+  TY+  I+ +  +    +  ++LK M    +
Sbjct: 513 ISGYSKRGDMKDAFRVRDEMLSIGFNPTLLTYNALIQGLCKNEEGDHAEQLLKEMISKGI 572

Query: 360 KPQDSTIATL 369
            P D+T  +L
Sbjct: 573 TPNDNTYLSL 582



 Score = 42.0 bits (97), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 66/297 (22%), Positives = 119/297 (40%), Gaps = 10/297 (3%)

Query: 108 ETWRMMEE-KEIGLNNKC--YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSF 164
           E   M+E+ KEIGL      Y  ++   C  G LE A +    +  R G+ P +  YN  
Sbjct: 279 EASGMLEKMKEIGLRPTAVTYNTLIDGYCNKGNLEMAFDYRDKM-VREGLMPTVSTYNML 337

Query: 165 LGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHY 223
           + A      M  A+  +  M  + +  + VTY  L+       N+     + ++ I K  
Sbjct: 338 IHALFLDCKMDEADGIIKEMSEKGLVPDSVTYNILINGYCRCGNVKKAFTLHDEMISKGI 397

Query: 224 SLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYI-NRTSEGRLRSSRLDIPIP 282
             +  +    ++  ++   +K A +  + +V   +   L + N   +G   +  +D    
Sbjct: 398 QPTRVTYTSLIYVLSKRGRMKQADDLFEKIVRKGIFPDLIMFNALIDGHCANGNMDRAFA 457

Query: 283 -LNALPVMKVL--RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIV 339
            L  +  MKV+    +F+ ++    R      A +L+ +M+S G++P   +Y+  I    
Sbjct: 458 MLKEMDQMKVVPDEVTFNTLMQGRCREGKVEAARELIEEMKSRGIKPDHISYNTLISGYS 517

Query: 340 SDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNP 395
               +++   V   M      P   T   L     K  E D AE LL + IS+   P
Sbjct: 518 KRGDMKDAFRVRDEMLSIGFNPTLLTYNALIQGLCKNEEGDHAEQLLKEMISKGITP 574


>gi|414882142|tpg|DAA59273.1| TPA: hypothetical protein ZEAMMB73_713491 [Zea mays]
          Length = 987

 Score = 93.2 bits (230), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 115/554 (20%), Positives = 211/554 (38%), Gaps = 69/554 (12%)

Query: 112 MMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKL 171
           MM      LN   Y L+++ LCK G + +A  L+  +  R G+ P +  YN+ +    K 
Sbjct: 274 MMVHDGCSLNLHTYTLLIKGLCKEGRIHDARGLLDEMPLR-GVVPSVWTYNAMIDGYCKS 332

Query: 172 HSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYSLSIFSL 230
             M  A     LM+      ++ TY  L+   +    L    E+    I + ++ ++ + 
Sbjct: 333 GRMKDALGIKALMEQNGCNPDDWTYNSLI-YGLCGGKLDEAEELLNGAIARGFTPTVITF 391

Query: 231 RKFVWSFTRLRDLKSAYETLQHMVA------LAMMGKLYINRTSEGRLRSSRLDI-PIPL 283
              +  + +   +  A     +M++      L   G L      + RL+ ++  +  +  
Sbjct: 392 TNLINGYCKAERIDDALRVKSNMISSNCKLDLQAYGVLINVLIKKCRLKEAKETLNEMFA 451

Query: 284 NALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRG 343
           N L    V   +++ +I    +    G A ++   M+  G  P++ TY   I  ++ D+ 
Sbjct: 452 NGLAPNVV---TYTSIIDGYCKVGMVGAALEVFKLMEHEGCHPNAWTYGSLIYGLIQDKK 508

Query: 344 LRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLA 403
           L   M ++  MQ++ + P   T  TL     K  E D                       
Sbjct: 509 LHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEFD----------------------- 545

Query: 404 ACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRIN 462
                     A ++F  M Q  L PD + Y +L       +   EE   F          
Sbjct: 546 ---------NAFRLFEMMEQNGLTPDEQAYNVLTDALCK-SGRAEEAYSF---------- 585

Query: 463 AIEMDMARNNIQHSHISMKNLLKALGAEG---MIRELIQYFCDSKTPLGTPTYNTVLHSL 519
                + R  +  + ++  +L+      G       LI+   +        TY+ +L +L
Sbjct: 586 -----LVRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADLYTYSVLLQAL 640

Query: 520 VEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFK--SASALVSMMVRDGFYP 577
            + ++ + A+ I  QM   G+  N   Y I+I    +I+  K   A +L + M+  G  P
Sbjct: 641 CKQKKLNEALSILDQMTVSGVKCNIVAYTIIIS--EMIKEGKHDHAKSLFNEMISSGHKP 698

Query: 578 QTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFII 637
              TYT  I      G  +EA +L+  +  +G+  DV+ YN  +      G ID     +
Sbjct: 699 SATTYTVFISSYCKIGRIEEAEHLIGEMERDGVTPDVVTYNIFINGCGHMGYIDRAFSTL 758

Query: 638 EQMHQNKVQPDPST 651
           ++M     +P+  T
Sbjct: 759 KRMVDASCEPNCWT 772



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 134/668 (20%), Positives = 268/668 (40%), Gaps = 52/668 (7%)

Query: 10  FQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERS 69
           +  + D +CKS            +++ +  +   M  N  +    T   ++  LC G+  
Sbjct: 322 YNAMIDGYCKS-----------GRMKDALGIKALMEQNGCNPDDWTYNSLIYGLCGGKLD 370

Query: 70  RASHLLLNLGHAHHSLGADDFFHILN-YCA--RSPDPLFVMETWRMMEEKEIGLNNKCYL 126
            A  LL        +     F +++N YC   R  D L V      M      L+ + Y 
Sbjct: 371 EAEELLNGAIARGFTPTVITFTNLINGYCKAERIDDALRVKSN---MISSNCKLDLQAYG 427

Query: 127 LMMQALCKGGYLEEASNLIYFLGERY--GIYPILPVYNSFLGACAKLHSMVHANL-CLDL 183
           +++  L K   L+EA      L E +  G+ P +  Y S +    K+  MV A L    L
Sbjct: 428 VLINVLIKKCRLKEAKET---LNEMFANGLAPNVVTYTSIIDGYCKV-GMVGAALEVFKL 483

Query: 184 MDSRMVGKNEVTYTELLKLAVWQKNL----SAVHEIWEDYIKHYSLSIFSLRKFVWSFTR 239
           M+      N  TY  L+   +  K L    + + ++ ED I   +  + +    +    +
Sbjct: 484 MEHEGCHPNAWTYGSLIYGLIQDKKLHKAMALITKMQEDGI---TPGVITYTTLIQGQCK 540

Query: 240 LRDLKSAYETLQHMVALAMM-GKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSD 298
             +  +A+   + M    +   +   N  ++   +S R +          + + + +++ 
Sbjct: 541 KHEFDNAFRLFEMMEQNGLTPDEQAYNVLTDALCKSGRAEEAYSFLVRKGVVLTKVTYTS 600

Query: 299 VIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNN 358
           ++    +  N+  A  L+ +M + G +   +TY   ++A+   + L   + +L  M  + 
Sbjct: 601 LVDGFSKAGNTDFAAVLIEKMVNEGCKADLYTYSVLLQALCKQKKLNEALSILDQMTVSG 660

Query: 359 LKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPKP--FSAFLAACDTMDKPERAI 415
           +K        +  E  K  + D A++L ++ IS    P    ++ F+++   + + E A 
Sbjct: 661 VKCNIVAYTIIISEMIKEGKHDHAKSLFNEMISSGHKPSATTYTVFISSYCKIGRIEEAE 720

Query: 416 KIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQ-VDSAKRINAIE-------- 465
            +  +M R  + PD+ TY +  +  G++       +   + VD++   N           
Sbjct: 721 HLIGEMERDGVTPDVVTYNIFINGCGHMGYIDRAFSTLKRMVDASCEPNCWTYWLLLKHF 780

Query: 466 MDMARNNIQHSHIS-MKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQE 524
           + M+  N  +   S M N ++      M+ +L++            TY++++    +A  
Sbjct: 781 LKMSLINAHYVDTSGMWNWIEL----NMVWQLLERMMKHGLNPTVVTYSSIIAGFCKATR 836

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
              A  +   M    I PN   Y ++I CC  I+ F  A + V+ M+  GF PQ  +Y  
Sbjct: 837 LEEACVLLDHMLGKDISPNEEIYTMLIKCCCDIKLFGKAVSFVTDMIEFGFQPQLESYHY 896

Query: 585 LIKILLDYGDFDEALNLL-DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
           LI  L D GD+D A +L  DL+ ++   H+ + +  +     + G +D    ++  M   
Sbjct: 897 LIVGLCDEGDYDRAKSLFCDLLGMD-YNHNEVAWKILNDGLLKAGHVDFCSQLLAAMDNR 955

Query: 644 KVQPDPST 651
             + D  +
Sbjct: 956 HCRIDSES 963



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 83/353 (23%), Positives = 148/353 (41%), Gaps = 25/353 (7%)

Query: 305 RTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDS 364
           RT +   A  L++ M  +G + + ++Y   I+ +   R +R  + ++ +M  +       
Sbjct: 226 RTSDLRKACWLLMMMPLMGCRRNEYSYTILIQGLCEARCVREALVLVFMMVHDGCSLNLH 285

Query: 365 TIATLSVECSKALELDLAEALLDQIS-RCTNPKPFSAFLAACDTMDKPER---AIKIFAK 420
           T   L     K   +  A  LLD++  R   P  ++ + A  D   K  R   A+ I A 
Sbjct: 286 TYTLLIKGLCKEGRIHDARGLLDEMPLRGVVPSVWT-YNAMIDGYCKSGRMKDALGIKAL 344

Query: 421 MRQK-LRPDIRTY-ELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHI 478
           M Q    PD  TY  L++ L G             ++D A+ +  +   +AR     + I
Sbjct: 345 MEQNGCNPDDWTYNSLIYGLCGG------------KLDEAEEL--LNGAIARG-FTPTVI 389

Query: 479 SMKNLLKALGAEGMIRELIQY---FCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQM 535
           +  NL+        I + ++       S   L    Y  +++ L++      A E   +M
Sbjct: 390 TFTNLINGYCKAERIDDALRVKSNMISSNCKLDLQAYGVLINVLIKKCRLKEAKETLNEM 449

Query: 536 KTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDF 595
              G+ PN  TY  +ID    +    +A  +  +M  +G +P   TY +LI  L+     
Sbjct: 450 FANGLAPNVVTYTSIIDGYCKVGMVGAALEVFKLMEHEGCHPNAWTYGSLIYGLIQDKKL 509

Query: 596 DEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
            +A+ L+  +  +GI   V+ Y T+++  C+K   D    + E M QN + PD
Sbjct: 510 HKAMALITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPD 562



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 82/189 (43%), Gaps = 5/189 (2%)

Query: 478 ISMKNLLKALGAEGMIRELIQYFC---DSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQ 534
           ++   ++ A   +G +    +YFC   +S   + T T N +L       +  +A  +   
Sbjct: 180 VTYNTMIMAYCKKGSLAIAHRYFCLLRESGMQMDTYTCNALLLGYCRTSDLRKACWLLMM 239

Query: 535 MKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGD 594
           M   G   N  +Y I+I      RC + A  LV MMV DG      TYT LIK L   G 
Sbjct: 240 MPLMGCRRNEYSYTILIQGLCEARCVREALVLVFMMVHDGCSLNLHTYTLLIKGLCKEGR 299

Query: 595 FDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHF 654
             +A  LLD + L G+   V  YN ++   C+ GR+     I   M QN   PD  T + 
Sbjct: 300 IHDARGLLDEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKALMEQNGCNPDDWTYNS 359

Query: 655 VFSGYVNCG 663
           +  G   CG
Sbjct: 360 LIYGL--CG 366



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 93/466 (19%), Positives = 176/466 (37%), Gaps = 113/466 (24%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A  L+ +M   G+ PS  TY+  I        +++ + +  +M+QN   P D T  +L  
Sbjct: 303 ARGLLDEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKALMEQNGCNPDDWTYNSLIY 362

Query: 372 ECSKALELDLAEALLD-QISRCTNPK--PFSAFLAACDTMDKPERAIKIFAKM-RQKLRP 427
                 +LD AE LL+  I+R   P    F+  +      ++ + A+++ + M     + 
Sbjct: 363 GLCGG-KLDEAEELLNGAIARGFTPTVITFTNLINGYCKAERIDDALRVKSNMISSNCKL 421

Query: 428 DIRTYELLFS-----------------LFGNVNAPYEEGNMFSQVDSAKRINAIEMDM-- 468
           D++ Y +L +                 +F N  AP       S +D   ++  +   +  
Sbjct: 422 DLQAYGVLINVLIKKCRLKEAKETLNEMFANGLAP-NVVTYTSIIDGYCKVGMVGAALEV 480

Query: 469 --------------ARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNT 514
                            ++ +  I  K L KA+     ++E      D  TP G  TY T
Sbjct: 481 FKLMEHEGCHPNAWTYGSLIYGLIQDKKLHKAMALITKMQE------DGITP-GVITYTT 533

Query: 515 VLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC--------------------- 553
           ++    +  E   A  +F+ M+  G+ P+   YN++ D                      
Sbjct: 534 LIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTDALCKSGRAEEAYSFLVRKGVVL 593

Query: 554 -----CSIIRCFKSA------SALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL 602
                 S++  F  A      + L+  MV +G      TY+ L++ L      +EAL++L
Sbjct: 594 TKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADLYTYSVLLQALCKQKKLNEALSIL 653

Query: 603 DLVSLEGIPHDVLLYNTILKKA-----------------------------------CEK 627
           D +++ G+  +++ Y  I+ +                                    C+ 
Sbjct: 654 DQMTVSGVKCNIVAYTIIISEMIKEGKHDHAKSLFNEMISSGHKPSATTYTVFISSYCKI 713

Query: 628 GRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           GRI+  E +I +M ++ V PD  T +   +G  + G+ + A   L+
Sbjct: 714 GRIEEAEHLIGEMERDGVTPDVVTYNIFINGCGHMGYIDRAFSTLK 759



 Score = 48.5 bits (114), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 46/197 (23%), Positives = 80/197 (40%), Gaps = 6/197 (3%)

Query: 483 LLKALGAEGMI---RELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCG 539
           L+K L  EG I   R L+             TYN ++    ++     A+ I   M+  G
Sbjct: 290 LIKGLCKEGRIHDARGLLDEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKALMEQNG 349

Query: 540 IPPNAATYNIMI-DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEA 598
             P+  TYN +I   C        A  L++  +  GF P  +T+T LI         D+A
Sbjct: 350 CNPDDWTYNSLIYGLCG--GKLDEAEELLNGAIARGFTPTVITFTNLINGYCKAERIDDA 407

Query: 599 LNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
           L +   +       D+  Y  ++    +K R+   +  + +M  N + P+  T   +  G
Sbjct: 408 LRVKSNMISSNCKLDLQAYGVLINVLIKKCRLKEAKETLNEMFANGLAPNVVTYTSIIDG 467

Query: 659 YVNCGFHNSAMEALQVL 675
           Y   G   +A+E  +++
Sbjct: 468 YCKVGMVGAALEVFKLM 484


>gi|302781562|ref|XP_002972555.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
 gi|300160022|gb|EFJ26641.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
          Length = 564

 Score = 93.2 bits (230), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 116/548 (21%), Positives = 228/548 (41%), Gaps = 54/548 (9%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGE--RYGIYPILPVYNSFLGACAKLHSMVHANLCLD 182
           Y +++Q+LC+ G  + A  L  F GE  R G+ P +  YN+ +    K + +       +
Sbjct: 4   YNIVLQSLCRAG--DTARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNDLGAGMELFE 61

Query: 183 LMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSL-SIFSLRKFVWSFTRLR 241
            +  R    + VTY  L+       +L     +  D      + ++ +    +    ++ 
Sbjct: 62  ELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKVG 121

Query: 242 DLKSAYETLQHMVALA---MMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLR----- 293
            +  A E +Q M   +   +   +  N   +G  + S     +   A  +M+ LR     
Sbjct: 122 RIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQS-----MTAEACELMRSLRDGSLR 176

Query: 294 -----WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGM 348
                 +FS +I    +      A  +   M + G  P+  TY+  +  +     +    
Sbjct: 177 VSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAH 236

Query: 349 EVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI-SRCTNPK-------PFSA 400
            +++ M    + P   T + L     KA  +D A  LL  + SR   P         F+ 
Sbjct: 237 AMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVLVPDKVTFNI 296

Query: 401 FLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAK 459
            +A        E+A  +F +M  K L+PD+ T+  L      ++   + G    QV++A+
Sbjct: 297 LIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGAL------IDGLCKAG----QVEAAR 346

Query: 460 RINAIEMDMARN-NIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTV 515
            I    +D+  N  +  + ++   L+  L   G I E  Q+  +  +    P   TY ++
Sbjct: 347 DI----LDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSL 402

Query: 516 LHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSM--MVRD 573
           +++L  A  +  A+++  ++K+ G  P+  TYNI++D   + +  K+  A+  +  MV  
Sbjct: 403 VYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVD--GLWKSGKTEQAITVLEEMVGK 460

Query: 574 GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVI 633
           G  P + T+ A    L   G+    + LL +V  +G+  D    ++IL   C  G++D +
Sbjct: 461 GHQPDSFTFAACFSGLHRSGNLAGTMELLRVVLAKGMLPDATTCSSILDWVCRSGKLDDV 520

Query: 634 EFIIEQMH 641
           + +I++  
Sbjct: 521 KAMIKEFE 528



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 94/372 (25%), Positives = 156/372 (41%), Gaps = 38/372 (10%)

Query: 318 QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKAL 377
           +M   G+ P+  TY+  I  +     L  GME+ + + +    P   T  TL     KA 
Sbjct: 27  EMARDGVAPTIVTYNTIINGLCKSNDLGAGMELFEELVERGHHPDVVTYNTLIDSLCKAG 86

Query: 378 ELDLAEAL-LDQISRCTNPK--PFSAFLAACDTMDKPERAIKIFAKMRQK---LRPDIRT 431
           +L+ A  L  D  SR   P    +S  +     + + + A ++  +M +K   + P+I T
Sbjct: 87  DLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIIT 146

Query: 432 Y-----------------ELLFSLF-GNVNAPYEEGNMFSQVDSAKRINAIEM------D 467
           Y                 EL+ SL  G++    +     + +D   +   I+       D
Sbjct: 147 YNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDD 206

Query: 468 MARNNIQHSHISMKNLLKAL-GAEGMIRE--LIQYFCDSKTPLGTPTYNTVLHSLVEAQE 524
           M       + I+   L+  L  A+ M R   +I+   D        TY+ ++ +  +A  
Sbjct: 207 MIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASR 266

Query: 525 SHRAMEIFKQMKTCGIPPNA-----ATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQT 579
              A+E+   M + G  PN       T+NI+I        F+ ASAL   MV     P  
Sbjct: 267 VDEALELLHGMASRGCTPNVLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDV 326

Query: 580 MTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQ 639
           MT+ ALI  L   G  + A ++LDL+   G+P +V+ YN ++   C+ GRI+     +E+
Sbjct: 327 MTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEE 386

Query: 640 MHQNKVQPDPST 651
           M  +   PD  T
Sbjct: 387 MVSSGCVPDSIT 398



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 64/287 (22%), Positives = 116/287 (40%), Gaps = 46/287 (16%)

Query: 413 RAIKIFAK--MRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           RA++IF     R  + P I TY  + +     N       +F ++               
Sbjct: 19  RALEIFRGEMARDGVAPTIVTYNTIINGLCKSNDLGAGMELFEEL--------------- 63

Query: 471 NNIQHSH----ISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQ 523
             ++  H    ++   L+ +L   G + E  +   D  +    P   TY+ +++ L +  
Sbjct: 64  --VERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKVG 121

Query: 524 ESHRAMEIFKQM--KTCGIPPNAATYNIMID----------CCSIIRCFKSASALVSMMV 571
               A E+ ++M  K+C + PN  TYN  +D           C ++R  +  S  VS   
Sbjct: 122 RIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVS--- 178

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
                P T+T++ LI  L   G  DEA ++ D +   G   +V+ YN ++   C+  +++
Sbjct: 179 -----PDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKME 233

Query: 632 VIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678
               +IE M    V PD  T   +   +      + A+E L  ++ R
Sbjct: 234 RAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASR 280



 Score = 52.8 bits (125), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 63/167 (37%), Gaps = 34/167 (20%)

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           YN VL SL  A ++ RA+EIF+                                    M 
Sbjct: 4   YNIVLQSLCRAGDTARALEIFR----------------------------------GEMA 29

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
           RDG  P  +TY  +I  L    D    + L + +   G   DV+ YNT++   C+ G ++
Sbjct: 30  RDGVAPTIVTYNTIINGLCKSNDLGAGMELFEELVERGHHPDVVTYNTLIDSLCKAGDLE 89

Query: 632 VIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678
               +   M      P+  T   + +G    G  + A E +Q ++ +
Sbjct: 90  EARRLHGDMSSRGCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRK 136


>gi|255558280|ref|XP_002520167.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540659|gb|EEF42222.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 604

 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 84/353 (23%), Positives = 149/353 (42%), Gaps = 20/353 (5%)

Query: 314 QLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVEC 373
           QL+ +MQ  GL+P+ +TY   I  +     +  G +VL+ M +  + P      TL    
Sbjct: 166 QLVKEMQLKGLKPNLYTYSSIILLLCKSGKVVEGEKVLREMMKRGVFPDHVIYTTLIDGF 225

Query: 374 SKALELDLAEALLDQI-SRCTNPK--PFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDI 429
            K      A  L  ++ +R   P    FSA +       K   A K+F +M +K   PD 
Sbjct: 226 CKLGNTQAAYKLFSEMEAREIVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKGFEPDE 285

Query: 430 RTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGA 489
            TY  L              + + ++   K+   +   M +  +  + ++   L   L  
Sbjct: 286 VTYTALI-------------DGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCK 332

Query: 490 EGMI---RELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAAT 546
            G +    EL+   C     L   TYNT+++ L +A    +A+++ ++MK  G+ P+  T
Sbjct: 333 SGELDTANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTIT 392

Query: 547 YNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVS 606
           Y  ++D          A  L+  M+  G  P  +T+  L+  L   G  ++   LL  + 
Sbjct: 393 YTTLMDAYYKTGEMVKARELLREMLDRGLQPTVVTFNVLMNGLCMSGKLEDGERLLKWML 452

Query: 607 LEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
            +GI  +   YN+I+K+ C +  + +   I   M    V PD +T + +  G+
Sbjct: 453 EKGIMPNAATYNSIMKQYCIRNNMRISTEIYRGMCAQGVVPDSNTYNILIKGH 505



 Score = 77.0 bits (188), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 84/348 (24%), Positives = 145/348 (41%), Gaps = 28/348 (8%)

Query: 295 SFSDVIHACGRTQNSGL--AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
           +FS +I  CG + +  +  A++L  +M   G +P   TY   I        ++    +  
Sbjct: 252 AFSALI--CGLSGSGKVVEADKLFNEMIKKGFEPDEVTYTALIDGYCKLGEMKKAFFLHN 309

Query: 353 IMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPE 412
            M Q  L P   T   L+    K+ ELD A  LL ++ R       S +    + + K  
Sbjct: 310 QMVQIGLTPNVVTYTALADGLCKSGELDTANELLHEMCRKGLQLNISTYNTIVNGLCKAG 369

Query: 413 ---RAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM-- 466
              +A+K+  +M++  L PD  TY  L      ++A Y+ G M         + A E+  
Sbjct: 370 NILQAVKLMEEMKEAGLHPDTITYTTL------MDAYYKTGEM---------VKARELLR 414

Query: 467 DMARNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQ 523
           +M    +Q + ++   L+  L   G + +   L+++  +        TYN+++       
Sbjct: 415 EMLDRGLQPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNAATYNSIMKQYCIRN 474

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
               + EI++ M   G+ P++ TYNI+I      R  K A  L   MV   F     +Y 
Sbjct: 475 NMRISTEIYRGMCAQGVVPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKRFNLTASSYN 534

Query: 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
           ALIK         EA  L + +  EG+     +YN  +    E+G ++
Sbjct: 535 ALIKGFFKRKKLLEARQLFEEMRREGLVASAEIYNLFVDMNYEEGNME 582



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 71/356 (19%), Positives = 151/356 (42%), Gaps = 22/356 (6%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A  L+++M+  G  P   +Y   I        L+  ++++K MQ   LKP   T +++ +
Sbjct: 129 AHHLLMRMEFKGCIPDVVSYTTIIDGYCHVGELQKVVQLVKEMQLKGLKPNLYTYSSIIL 188

Query: 372 ECSKALELDLAEALL-DQISRCTNPKP--FSAFLAACDTMDKPERAIKIFAKMR-QKLRP 427
              K+ ++   E +L + + R   P    ++  +     +   + A K+F++M  +++ P
Sbjct: 189 LLCKSGKVVEGEKVLREMMKRGVFPDHVIYTTLIDGFCKLGNTQAAYKLFSEMEAREIVP 248

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL 487
           D   +  L           E   +F++             M +   +   ++   L+   
Sbjct: 249 DSIAFSALICGLSGSGKVVEADKLFNE-------------MIKKGFEPDEVTYTALIDGY 295

Query: 488 GAEGMIRELIQYFCDSKTPLG-TP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPN 543
              G +++   +  +    +G TP   TY  +   L ++ E   A E+  +M   G+  N
Sbjct: 296 CKLGEMKKAF-FLHNQMVQIGLTPNVVTYTALADGLCKSGELDTANELLHEMCRKGLQLN 354

Query: 544 AATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLD 603
            +TYN +++          A  L+  M   G +P T+TYT L+      G+  +A  LL 
Sbjct: 355 ISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAYYKTGEMVKARELLR 414

Query: 604 LVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
            +   G+   V+ +N ++   C  G+++  E +++ M +  + P+ +T + +   Y
Sbjct: 415 EMLDRGLQPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNAATYNSIMKQY 470



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/178 (23%), Positives = 74/178 (41%), Gaps = 5/178 (2%)

Query: 491 GMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIM 550
           GM+ ++   F        T +YN +++SL    +   A  +  +M+  G  P+  +Y  +
Sbjct: 92  GMVLKVFSEFPQLGVCWNTESYNILMNSLFRLGKIREAHHLLMRMEFKGCIPDVVSYTTI 151

Query: 551 IDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGI 610
           ID    +   +    LV  M   G  P   TY+++I +L   G   E   +L  +   G+
Sbjct: 152 IDGYCHVGELQKVVQLVKEMQLKGLKPNLYTYSSIILLLCKSGKVVEGEKVLREMMKRGV 211

Query: 611 PHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSA 668
             D ++Y T++   C+ G       +  +M   ++ PD       FS  + CG   S 
Sbjct: 212 FPDHVIYTTLIDGFCKLGNTQAAYKLFSEMEAREIVPDS----IAFSALI-CGLSGSG 264



 Score = 52.8 bits (125), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/151 (20%), Positives = 70/151 (46%)

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
            +++F +    G+  N  +YNI+++    +   + A  L+  M   G  P  ++YT +I 
Sbjct: 94  VLKVFSEFPQLGVCWNTESYNILMNSLFRLGKIREAHHLLMRMEFKGCIPDVVSYTTIID 153

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
                G+  + + L+  + L+G+  ++  Y++I+   C+ G++   E ++ +M +  V P
Sbjct: 154 GYCHVGELQKVVQLVKEMQLKGLKPNLYTYSSIILLLCKSGKVVEGEKVLREMMKRGVFP 213

Query: 648 DPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678
           D      +  G+   G   +A +    +  R
Sbjct: 214 DHVIYTTLIDGFCKLGNTQAAYKLFSEMEAR 244



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 80/456 (17%), Positives = 180/456 (39%), Gaps = 55/456 (12%)

Query: 106 VMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFL 165
           V++  + M+ K +  N   Y  ++  LCK G + E   ++  + +R G++P   +Y + +
Sbjct: 164 VVQLVKEMQLKGLKPNLYTYSSIILLLCKSGKVVEGEKVLREMMKR-GVFPDHVIYTTLI 222

Query: 166 GACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH-YS 224
               KL +   A      M++R +  + + ++ L+        +    +++ + IK  + 
Sbjct: 223 DGFCKLGNTQAAYKLFSEMEAREIVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKGFE 282

Query: 225 LSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYI-NRTSEGRLRSSRLDIPIPL 283
               +    +  + +L ++K A+     MV + +   +      ++G  +S  LD    L
Sbjct: 283 PDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCKSGELDTANEL 342

Query: 284 NALPVMKVLRW---SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVS 340
                 K L+    +++ +++   +  N   A +LM +M+  GL P + TY   + A   
Sbjct: 343 LHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAYYK 402

Query: 341 DRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI---SRCTNPKP 397
              +    E+L+ M    L+P   T   L      + +L+  E LL  +       N   
Sbjct: 403 TGEMVKARELLREMLDRGLQPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNAAT 462

Query: 398 FSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVD 456
           +++ +      +    + +I+  M  Q + PD  TY +L                     
Sbjct: 463 YNSIMKQYCIRNNMRISTEIYRGMCAQGVVPDSNTYNILIK------------------- 503

Query: 457 SAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVL 516
                               H   +N+ +A     + +E+++     +  L   +YN ++
Sbjct: 504 -------------------GHCKARNMKEAW---FLHKEMVE----KRFNLTASSYNALI 537

Query: 517 HSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID 552
               + ++   A ++F++M+  G+  +A  YN+ +D
Sbjct: 538 KGFFKRKKLLEARQLFEEMRREGLVASAEIYNLFVD 573



 Score = 45.4 bits (106), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 68/148 (45%), Gaps = 13/148 (8%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
            ++     LVEA   + A + F ++   G+  +A + N+ + C S      S   ++ M+
Sbjct: 41  VFDVFFQVLVEAGLLNEARKFFDKLLNYGVALSAGSCNLYLTCLS------SKRDMLGMV 94

Query: 571 VRD-GFYPQ------TMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKK 623
           ++    +PQ      T +Y  L+  L   G   EA +LL  +  +G   DV+ Y TI+  
Sbjct: 95  LKVFSEFPQLGVCWNTESYNILMNSLFRLGKIREAHHLLMRMEFKGCIPDVVSYTTIIDG 154

Query: 624 ACEKGRIDVIEFIIEQMHQNKVQPDPST 651
            C  G +  +  ++++M    ++P+  T
Sbjct: 155 YCHVGELQKVVQLVKEMQLKGLKPNLYT 182


>gi|449436409|ref|XP_004135985.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic-like [Cucumis sativus]
          Length = 868

 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 121/280 (43%), Gaps = 16/280 (5%)

Query: 398 FSAFLAACDTMDKPERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVD 456
           FSA ++A       + AIK+F  M+   L+P++ TY  +    G     +          
Sbjct: 225 FSALISAYGKSGYFDEAIKVFESMKVSGLKPNLVTYNAVIDACGKGGVEF---------- 274

Query: 457 SAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGM---IRELIQYFCDSKTPLGTPTYN 513
             KR+  I  +M RN +Q   I+  +LL      G+    R L     D        TYN
Sbjct: 275 --KRVVEIFEEMLRNGVQPDRITYNSLLAVCSRGGLWEAARNLFNEMIDRGIDQDVFTYN 332

Query: 514 TVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRD 573
           T+L ++ +  +   A EI  +M    I PN  TY+ M D  +     + A  L + M   
Sbjct: 333 TLLDAVCKGGQMDLAYEIMLEMPGKKILPNVVTYSTMADGYAKAGRLEDALNLYNEMKFL 392

Query: 574 GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVI 633
           G     ++Y  L+ I    G F++AL +   +   G+  DV+ YN +L    ++G+ + +
Sbjct: 393 GIGLDRVSYNTLLSIYAKLGRFEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEV 452

Query: 634 EFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
             + ++M +++V P+  T   +   Y     +  AME  +
Sbjct: 453 TRVFKEMKKDRVFPNLLTYSTLIDVYSKGSLYEEAMEVFR 492



 Score = 82.8 bits (203), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 86/426 (20%), Positives = 173/426 (40%), Gaps = 44/426 (10%)

Query: 297 SDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQ 356
           S +I   GR     LA+ +     S G   +   +   I A          ++V + M+ 
Sbjct: 191 SAMISTLGRLGKVELAKGVFETALSEGYGNTVFAFSALISAYGKSGYFDEAIKVFESMKV 250

Query: 357 NNLKPQDSTIATLSVECSKA-LELDLAEALLDQISRCTNPKP----FSAFLAACDTMDKP 411
           + LKP   T   +   C K  +E      + +++ R    +P    +++ LA C      
Sbjct: 251 SGLKPNLVTYNAVIDACGKGGVEFKRVVEIFEEMLR-NGVQPDRITYNSLLAVCSRGGLW 309

Query: 412 ERAIKIFAKMRQK-LRPDIRTYELLFSLF---GNVNAPYEEGNMFSQVDSAKRINAIEMD 467
           E A  +F +M  + +  D+ TY  L       G ++  YE                I ++
Sbjct: 310 EAARNLFNEMIDRGIDQDVFTYNTLLDAVCKGGQMDLAYE----------------IMLE 353

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSK---TPLGTPTYNTVLHSLVEAQE 524
           M    I  + ++   +       G + + +  + + K     L   +YNT+L    +   
Sbjct: 354 MPGKKILPNVVTYSTMADGYAKAGRLEDALNLYNEMKFLGIGLDRVSYNTLLSIYAKLGR 413

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
              A+++ K+M + G+  +  TYN ++D       F   + +   M +D  +P  +TY+ 
Sbjct: 414 FEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKEMKKDRVFPNLLTYST 473

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
           LI +      ++EA+ +       G+  DV+LY+ ++   C+ G +D    ++++M +  
Sbjct: 474 LIDVYSKGSLYEEAMEVFREFKQAGLKADVVLYSELINALCKNGLVDSAVLLLDEMTKEG 533

Query: 645 VQPDPSTCHFVFSGYVNCGFHNSAMEAL-QVLSMRMLCEEVSTLEEKRSDFEDLILAEDS 703
           ++P+  T             +NS ++A  +  +   L + V    E++S+    +L E  
Sbjct: 534 IRPNVVT-------------YNSIIDAFGRSTTAEFLVDGVGASNERQSESPSFMLIEGV 580

Query: 704 EAESRI 709
           + ES I
Sbjct: 581 D-ESEI 585



 Score = 80.9 bits (198), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 87/380 (22%), Positives = 168/380 (44%), Gaps = 38/380 (10%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRG---LRNGMEV 350
           ++FS +I A G++     A ++   M+  GL+P+  TY+  I A    +G    +  +E+
Sbjct: 223 FAFSALISAYGKSGYFDEAIKVFESMKVSGLKPNLVTYNAVIDAC--GKGGVEFKRVVEI 280

Query: 351 LKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPKPFS--AFLAACDT 407
            + M +N ++P   T  +L   CS+    + A  L ++ I R  +   F+    L A   
Sbjct: 281 FEEMLRNGVQPDRITYNSLLAVCSRGGLWEAARNLFNEMIDRGIDQDVFTYNTLLDAVCK 340

Query: 408 MDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM 466
             + + A +I  +M  +K+ P++ TY  +   +       +  N+++++    +   I +
Sbjct: 341 GGQMDLAYEIMLEMPGKKILPNVVTYSTMADGYAKAGRLEDALNLYNEM----KFLGIGL 396

Query: 467 DMARNNIQHSHISMK--------NLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHS 518
           D    N   S I  K         + K +G+ G+ ++++             TYN +L  
Sbjct: 397 DRVSYNTLLS-IYAKLGRFEDALKVCKEMGSSGVKKDVV-------------TYNALLDG 442

Query: 519 LVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQ 578
             +  + +    +FK+MK   + PN  TY+ +ID  S    ++ A  +     + G    
Sbjct: 443 YGKQGKFNEVTRVFKEMKKDRVFPNLLTYSTLIDVYSKGSLYEEAMEVFREFKQAGLKAD 502

Query: 579 TMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIE 638
            + Y+ LI  L   G  D A+ LLD ++ EGI  +V+ YN+I+      GR    EF+++
Sbjct: 503 VVLYSELINALCKNGLVDSAVLLLDEMTKEGIRPNVVTYNSIIDAF---GRSTTAEFLVD 559

Query: 639 QMHQNKVQPDPSTCHFVFSG 658
            +  +  +   S    +  G
Sbjct: 560 GVGASNERQSESPSFMLIEG 579



 Score = 48.1 bits (113), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 92/473 (19%), Positives = 186/473 (39%), Gaps = 54/473 (11%)

Query: 119 GLNNKCYLL--MMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVH 176
           G  N  +    ++ A  K GY +EA  +   + +  G+ P L  YN+ + AC K    V 
Sbjct: 217 GYGNTVFAFSALISAYGKSGYFDEAIKVFESM-KVSGLKPNLVTYNAVIDACGK--GGVE 273

Query: 177 ANLCLDLMDSRM---VGKNEVTYTELLKL----AVWQKNLSAVHEIWEDYIKHYSLSIFS 229
               +++ +  +   V  + +TY  LL +     +W+   +  +E+ +  I      +F+
Sbjct: 274 FKRVVEIFEEMLRNGVQPDRITYNSLLAVCSRGGLWEAARNLFNEMIDRGIDQ---DVFT 330

Query: 230 LRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRT-SEGRLRSSRLDIPIPLNALPV 288
               + +  +   +  AYE +  M    ++  +    T ++G  ++ RL+    LN    
Sbjct: 331 YNTLLDAVCKGGQMDLAYEIMLEMPGKKILPNVVTYSTMADGYAKAGRLE--DALNLYNE 388

Query: 289 MKVL-----RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRG 343
           MK L     R S++ ++    +      A ++  +M S G++    TY+  +        
Sbjct: 389 MKFLGIGLDRVSYNTLLSIYAKLGRFEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGK 448

Query: 344 LRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRC---TNPKPFSA 400
                 V K M+++ + P   T +TL    SK    + A  +  +  +     +   +S 
Sbjct: 449 FNEVTRVFKEMKKDRVFPNLLTYSTLIDVYSKGSLYEEAMEVFREFKQAGLKADVVLYSE 508

Query: 401 FLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFG-NVNAPYEEGNMFSQVDSA 458
            + A       + A+ +  +M ++ +RP++ TY  +   FG +  A +        VD  
Sbjct: 509 LINALCKNGLVDSAVLLLDEMTKEGIRPNVVTYNSIIDAFGRSTTAEF-------LVDGV 561

Query: 459 KRINAIEMD----MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNT 514
              N  + +    M    +  S I+          +G + +  Q     K     P    
Sbjct: 562 GASNERQSESPSFMLIEGVDESEINWD--------DGHVFKFYQQLVSEKE---GPAKKE 610

Query: 515 VLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALV 567
            L      +E    + +FK+M    I PN  T++ +++ CS  +  + AS L+
Sbjct: 611 RLGK----EEIRSILSVFKKMHELEIKPNVVTFSAILNACSRCKSIEDASMLL 659



 Score = 47.0 bits (110), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 56/298 (18%), Positives = 114/298 (38%), Gaps = 49/298 (16%)

Query: 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
           R +++ ++  C R      A  L  +M   G+     TY+  + A+     +    E++ 
Sbjct: 293 RITYNSLLAVCSRGGLWEAARNLFNEMIDRGIDQDVFTYNTLLDAVCKGGQMDLAYEIML 352

Query: 353 IMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ---ISRCTNPKPFSAFLAACDTMD 409
            M    + P   T +T++   +KA  L+ A  L ++   +    +   ++  L+    + 
Sbjct: 353 EMPGKKILPNVVTYSTMADGYAKAGRLEDALNLYNEMKFLGIGLDRVSYNTLLSIYAKLG 412

Query: 410 KPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
           + E A+K+  +M    ++ D+ TY  L   +G      E   +F +             M
Sbjct: 413 RFEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKE-------------M 459

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRA 528
            ++ +        NLL                          TY+T++    +      A
Sbjct: 460 KKDRV------FPNLL--------------------------TYSTLIDVYSKGSLYEEA 487

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
           ME+F++ K  G+  +   Y+ +I+         SA  L+  M ++G  P  +TY ++I
Sbjct: 488 MEVFREFKQAGLKADVVLYSELINALCKNGLVDSAVLLLDEMTKEGIRPNVVTYNSII 545


>gi|225457536|ref|XP_002272226.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial [Vitis vinifera]
 gi|297745544|emb|CBI40709.3| unnamed protein product [Vitis vinifera]
          Length = 695

 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 118/535 (22%), Positives = 219/535 (40%), Gaps = 62/535 (11%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y +++ AL +   L EA    + L +R  + P+   YN+ +GACA+   +  A   +  M
Sbjct: 157 YSILIHALGRSEKLYEA----FLLSQRQTLTPL--TYNALIGACARNDDLEKALNLMSRM 210

Query: 185 DSRMVGKNEVTYTELLK-LAVWQKNLSAV-----HEIWEDYIKHYSLSIFSLRKFVWSFT 238
                  + V Y+ +++ L    K+ S++      EI  D I+   L    L   +  F 
Sbjct: 211 RRDGFPSDFVNYSFIIQSLTRTNKSDSSMLQKIYAEIESDKIE---LDGQLLNDIIVGFA 267

Query: 239 RLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSD 298
           +  D+  A      M  LAM+         +G   S       P  A  V          
Sbjct: 268 KSGDVNRA------MSFLAMV---------QGNGLS-------PKTATLVA--------- 296

Query: 299 VIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNN 358
           VI A G    +  AE +  +++  GL P +  Y+  ++  V    L++   ++  M+++ 
Sbjct: 297 VITALGNAGRTEEAEAIFEELKEGGLMPRTRAYNALLKGYVKTGSLKDAESIVSEMERSG 356

Query: 359 LKPQDSTIATLSVECSKALELDLAEALLDQISRC---TNPKPFSAFLAACDTMDKPERAI 415
             P + T + L    + A   + A  +L ++       N   FS  LA+     K +++ 
Sbjct: 357 FSPDEHTYSLLIDAYANAGRWESARIVLKEMEASGVRPNSYVFSRILASYRDRGKWQKSF 416

Query: 416 KIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMD-MARNNI 473
           ++  +MR   + PD   Y ++   FG  N        F ++    R+  ++ D +  N +
Sbjct: 417 QVLREMRNSGVSPDRHFYNVMIDTFGKCNCLDHALATFDRM----RMEGVQPDAVTWNTL 472

Query: 474 QHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFK 533
              H    +  KA        EL +   +S     T TYN +++S  E +       +  
Sbjct: 473 IDCHCKSGHHNKA-------EELFEAMQESGCSPCTTTYNIMINSFGEQERWEDVKTLLG 525

Query: 534 QMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYG 593
           +M++ G+  N  TY  ++D       FK A   + +M   G  P +  Y ALI      G
Sbjct: 526 KMQSQGLLANVVTYTTLVDIYGQSGRFKDAIECLEVMKSVGLKPSSTMYNALINAYAQRG 585

Query: 594 DFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
             ++A+N   ++  +G+   VL+ N+++    E  R      +++ M +N ++PD
Sbjct: 586 LSEQAINAFRVMRADGLKPSVLVLNSLINAFGEDRRDAEAFSVLQYMKENDLKPD 640



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 94/434 (21%), Positives = 184/434 (42%), Gaps = 29/434 (6%)

Query: 295 SFSDVIHACGRTQ--NSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
           ++S +I +  RT   +S + +++  +++S  ++      +  I        +   M  L 
Sbjct: 221 NYSFIIQSLTRTNKSDSSMLQKIYAEIESDKIELDGQLLNDIIVGFAKSGDVNRAMSFLA 280

Query: 353 IMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMD 409
           ++Q N L P+ +T+  +      A   + AEA+ +++         + ++A L       
Sbjct: 281 MVQGNGLSPKTATLVAVITALGNAGRTEEAEAIFEELKEGGLMPRTRAYNALLKGYVKTG 340

Query: 410 KPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
             + A  I ++M R    PD  TY LL   + N            + +SA RI   EM+ 
Sbjct: 341 SLKDAESIVSEMERSGFSPDEHTYSLLIDAYANAG----------RWESA-RIVLKEMEA 389

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPT---YNTVLHSLVEAQES 525
           +   ++ +      +L +    G  ++  Q   + +    +P    YN ++ +  +    
Sbjct: 390 S--GVRPNSYVFSRILASYRDRGKWQKSFQVLREMRNSGVSPDRHFYNVMIDTFGKCNCL 447

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
             A+  F +M+  G+ P+A T+N +IDC         A  L   M   G  P T TY  +
Sbjct: 448 DHALATFDRMRMEGVQPDAVTWNTLIDCHCKSGHHNKAEELFEAMQESGCSPCTTTYNIM 507

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI-DVIEFIIEQMHQNK 644
           I    +   +++   LL  +  +G+  +V+ Y T++    + GR  D IE  +E M    
Sbjct: 508 INSFGEQERWEDVKTLLGKMQSQGLLANVVTYTTLVDIYGQSGRFKDAIE-CLEVMKSVG 566

Query: 645 VQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDF-EDLILAEDS 703
           ++P  +  + + + Y   G    A+ A +V+    L   V  L    + F ED     D+
Sbjct: 567 LKPSSTMYNALINAYAQRGLSEQAINAFRVMRADGLKPSVLVLNSLINAFGED---RRDA 623

Query: 704 EAESRILQFCEDSN 717
           EA S +LQ+ ++++
Sbjct: 624 EAFS-VLQYMKEND 636



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 66/299 (22%), Positives = 128/299 (42%), Gaps = 11/299 (3%)

Query: 381 LAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRP-DIRTYELLFSLF 439
           L EA L    +   P  ++A + AC   D  E+A+ + ++MR+   P D   Y  +    
Sbjct: 170 LYEAFLLSQRQTLTPLTYNALIGACARNDDLEKALNLMSRMRRDGFPSDFVNYSFIIQSL 229

Query: 440 GNVNAPYEEGNMFSQVDSAKRINAIEMD-MARNNIQHSHISMKNLLKALGAEGMIRELIQ 498
              N    + +M  ++ +    + IE+D    N+I        ++ +A+    M++    
Sbjct: 230 TRTNK--SDSSMLQKIYAEIESDKIELDGQLLNDIIVGFAKSGDVNRAMSFLAMVQ---- 283

Query: 499 YFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIR 558
              +  +P  T T   V+ +L  A  +  A  IF+++K  G+ P    YN ++       
Sbjct: 284 --GNGLSP-KTATLVAVITALGNAGRTEEAEAIFEELKEGGLMPRTRAYNALLKGYVKTG 340

Query: 559 CFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYN 618
             K A ++VS M R GF P   TY+ LI    + G ++ A  +L  +   G+  +  +++
Sbjct: 341 SLKDAESIVSEMERSGFSPDEHTYSLLIDAYANAGRWESARIVLKEMEASGVRPNSYVFS 400

Query: 619 TILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSM 677
            IL    ++G+      ++ +M  + V PD    + +   +  C   + A+     + M
Sbjct: 401 RILASYRDRGKWQKSFQVLREMRNSGVSPDRHFYNVMIDTFGKCNCLDHALATFDRMRM 459



 Score = 40.4 bits (93), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 61/267 (22%), Positives = 105/267 (39%), Gaps = 27/267 (10%)

Query: 153 GIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAV 212
           G+ P    YN  +    K + + HA    D M    V  + VT+  L+       + +  
Sbjct: 426 GVSPDRHFYNVMIDTFGKCNCLDHALATFDRMRMEGVQPDAVTWNTLIDCHCKSGHHNKA 485

Query: 213 HEIWEDYIKHY-SLSIFSLRKFVWSFT---RLRDLKSAYETLQ------HMVALAMMGKL 262
            E++E   +   S    +    + SF    R  D+K+    +Q      ++V    +  +
Sbjct: 486 EELFEAMQESGCSPCTTTYNIMINSFGEQERWEDVKTLLGKMQSQGLLANVVTYTTLVDI 545

Query: 263 YINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHAC--GRTQNSGLAEQLMLQ-- 318
           Y      GR + +       +  L VMK +    S  ++          GL+EQ +    
Sbjct: 546 Y---GQSGRFKDA-------IECLEVMKSVGLKPSSTMYNALINAYAQRGLSEQAINAFR 595

Query: 319 -MQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKAL 377
            M++ GL+PS    +  I A   DR       VL+ M++N+LKP   T  TL     +  
Sbjct: 596 VMRADGLKPSVLVLNSLINAFGEDRRDAEAFSVLQYMKENDLKPDVVTYTTLMKALIRVE 655

Query: 378 ELDLAEALLDQ--ISRCTNPKPFSAFL 402
           + D   A+ ++  +S CT  +   A L
Sbjct: 656 KFDKVPAVYEEMTLSGCTPDRKARAML 682


>gi|148906470|gb|ABR16388.1| unknown [Picea sitchensis]
          Length = 700

 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 107/473 (22%), Positives = 208/473 (43%), Gaps = 39/473 (8%)

Query: 237 FTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRW-- 294
           FT L+ L    +T    +  +M+    ++    GR + S       L A  +MK + +  
Sbjct: 232 FTELQSLLQKMQTQGREITRSMLHSFVMSYGRSGRFKES-------LEAFNLMKEMGYEP 284

Query: 295 -----SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGME 349
                +++ V+ +  + +   +AE L  QM + G+  ++ TY   I+       + + M+
Sbjct: 285 GLIDTAYNSVLVSLVKNKKLDMAENLFAQMINNGVSCNNLTYTSMIQCFFLKEKMEDAMK 344

Query: 350 VLKIMQQNNLKPQDSTIA-TLSVECSKALELDLAEALLDQI--SRC-TNPKPFSAFLAAC 405
           +L  M QNN  P   T    +S  C + + ++ A  +L ++  + C  N   ++A +   
Sbjct: 345 LLDDMIQNNYAPDVVTYTIVISALCKRKM-IEQAYGVLQKMRENGCEPNIYTYNALIQGL 403

Query: 406 DTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQ-VDSAKRINA 463
             + +PE A+++   M Q  + P+I TY +L      +        MF++ +    + N 
Sbjct: 404 CAVRRPEEALELVTLMEQGGVPPNIYTYTILTHGLCKLRRLDRAKEMFNEALARGLKPNR 463

Query: 464 IEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQ 523
           +      N + + +     L++A+    +++E+ Q  C   TP    TY T++  LV+  
Sbjct: 464 V----TYNTLLNGYCRGSRLIEAMD---ILKEMHQNDC---TPDHV-TYTTLIQGLVQGN 512

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
           +   A+ +  +M+  G   N  T NI+    + +   K AS     M   GF      Y 
Sbjct: 513 QLPDALRMHDEMENKGYDVNFDTLNILARGLARVGNHKDASIFYRRMKDRGFAYSASDYY 572

Query: 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
             I  L   G+ +EA  LL  +  +G   ++  YNT++K  C +GR+D  + ++  M +N
Sbjct: 573 LAIHCLSTAGEMEEAQALLYEMINKGYSPNLTTYNTMIKGFCRQGRLDDADAMLNFMIEN 632

Query: 644 KVQPDPSTCHFVFSGYVNCG-------FHNSAMEALQVLSMRMLCEEVSTLEE 689
            + PD  + + +   + N G        + +A+E   VL+ + + +E   L E
Sbjct: 633 GIGPDTGSYNILIKEFHNQGRTQDADQLYATALERGVVLNPKPVIQEPDELPE 685



 Score = 62.4 bits (150), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 63/287 (21%), Positives = 120/287 (41%), Gaps = 31/287 (10%)

Query: 375 KALELD----LAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIF--AKMRQKLRPD 428
           KA+E D    L +  L+ +++  NP    A +   +     + A++ F  A  ++    +
Sbjct: 159 KAIEEDQWECLQDNFLNSMAQDLNP---DAVVKVLNLQTDAQNALRFFQWADKQEGYDHN 215

Query: 429 IRTYELLFSLFGNVNAPYEEGNMFSQVDSAKR------INAIEMDMARNNIQHSHISMKN 482
              Y  +  + G      E  ++  ++ +  R      +++  M   R+      +   N
Sbjct: 216 TDAYFTMIDILGRAKMFTELQSLLQKMQTQGREITRSMLHSFVMSYGRSGRFKESLEAFN 275

Query: 483 LLKALGAE-GMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIP 541
           L+K +G E G+I                  YN+VL SLV+ ++   A  +F QM   G+ 
Sbjct: 276 LMKEMGYEPGLI---------------DTAYNSVLVSLVKNKKLDMAENLFAQMINNGVS 320

Query: 542 PNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNL 601
            N  TY  MI C  +    + A  L+  M+++ + P  +TYT +I  L      ++A  +
Sbjct: 321 CNNLTYTSMIQCFFLKEKMEDAMKLLDDMIQNNYAPDVVTYTIVISALCKRKMIEQAYGV 380

Query: 602 LDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
           L  +   G   ++  YN +++  C   R +    ++  M Q  V P+
Sbjct: 381 LQKMRENGCEPNIYTYNALIQGLCAVRRPEEALELVTLMEQGGVPPN 427



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 72/329 (21%), Positives = 135/329 (41%), Gaps = 32/329 (9%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           ++  +I   GR +     + L+ +MQ+ G + +      F+ +       +  +E   +M
Sbjct: 218 AYFTMIDILGRAKMFTELQSLLQKMQTQGREITRSMLHSFVMSYGRSGRFKESLEAFNLM 277

Query: 355 QQNNLKPQ--DSTIATLSVECSKALELDLAEALLDQI----SRCTNPKPFSAFLAACDTM 408
           ++   +P   D+   ++ V   K  +LD+AE L  Q+      C N   +++ +      
Sbjct: 278 KEMGYEPGLIDTAYNSVLVSLVKNKKLDMAENLFAQMINNGVSCNNLT-YTSMIQCFFLK 336

Query: 409 DKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMD 467
           +K E A+K+   M Q    PD+ TY ++ S                +    ++   +   
Sbjct: 337 EKMEDAMKLLDDMIQNNYAPDVVTYTIVIS-------------ALCKRKMIEQAYGVLQK 383

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIR------ELIQYFCDSKTPLGTPTYNTVLHSLVE 521
           M  N  + +  +   L++ L A   +R      EL+        P    TY  + H L +
Sbjct: 384 MRENGCEPNIYTYNALIQGLCA---VRRPEEALELVTLMEQGGVPPNIYTYTILTHGLCK 440

Query: 522 AQESHRAMEIFKQMKTCGIPPNAATYNIMIDC-CSIIRCFKSASALVSMMVRDGFYPQTM 580
            +   RA E+F +    G+ PN  TYN +++  C   R  ++   L  M   D   P  +
Sbjct: 441 LRRLDRAKEMFNEALARGLKPNRVTYNTLLNGYCRGSRLIEAMDILKEMHQND-CTPDHV 499

Query: 581 TYTALIKILLDYGDFDEALNLLDLVSLEG 609
           TYT LI+ L+      +AL + D +  +G
Sbjct: 500 TYTTLIQGLVQGNQLPDALRMHDEMENKG 528



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 52/240 (21%), Positives = 104/240 (43%), Gaps = 17/240 (7%)

Query: 140 EASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTEL 199
           EA NL+  +G   G+  I   YNS L +  K   +  A      M +  V  N +TYT +
Sbjct: 272 EAFNLMKEMGYEPGL--IDTAYNSVLVSLVKNKKLDMAENLFAQMINNGVSCNNLTYTSM 329

Query: 200 LKLAVWQKNLSAVHEIWEDYIK-HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAM 258
           ++    ++ +    ++ +D I+ +Y+  + +    + +  + + ++ AY  LQ M     
Sbjct: 330 IQCFFLKEKMEDAMKLLDDMIQNNYAPDVVTYTIVISALCKRKMIEQAYGVLQKMRENGC 389

Query: 259 MGKLYI-NRTSEGRLRSSRLDIPIPLNALPVMKVLR--------WSFSDVIHACGRTQNS 309
              +Y  N   +G     R     P  AL ++ ++         ++++ + H   + +  
Sbjct: 390 EPNIYTYNALIQGLCAVRR-----PEEALELVTLMEQGGVPPNIYTYTILTHGLCKLRRL 444

Query: 310 GLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL 369
             A+++  +  + GL+P+  TY+  +        L   M++LK M QN+  P   T  TL
Sbjct: 445 DRAKEMFNEALARGLKPNRVTYNTLLNGYCRGSRLIEAMDILKEMHQNDCTPDHVTYTTL 504


>gi|224089372|ref|XP_002308709.1| predicted protein [Populus trichocarpa]
 gi|222854685|gb|EEE92232.1| predicted protein [Populus trichocarpa]
          Length = 1115

 Score = 92.8 bits (229), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 143/677 (21%), Positives = 272/677 (40%), Gaps = 61/677 (9%)

Query: 54  ATQMQIVDALCRGER-SRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRM 112
            T   ++DALC   +   A  L   +  + H      +  +L+  +       V + W  
Sbjct: 300 VTYTVLIDALCTARKLDDAMCLFTKMKSSSHKPDKVTYVTLLDKFSDCGHLDKVEKIWTE 359

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
           ME      +   + +++ ALCK G + EA +L+  +  + G+ P L  YN+ +    + +
Sbjct: 360 MEADGYAPDVVTFTILVNALCKAGRINEAFDLLDTM-RKQGVLPNLHTYNTLISGLLRAN 418

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDY-IKHYSLSIFSLR 231
            +  A      M+S  V     TY  L+       +     E +E    +  + +I +  
Sbjct: 419 RLDDALDLFSNMESLGVEPTAYTYILLIDYHGKSGHPGKALETFEKMKARGIAPNIVACN 478

Query: 232 KFVWSFT---RLRDLKSAYETLQ------HMVALAMMGKLY--INRTSEGRLRSSRLDIP 280
             ++S     RL + K+ +  L+        V   MM K Y  + +  E     S +   
Sbjct: 479 ASLYSLAEMGRLGEAKAMFNELKSSGLAPDSVTYNMMMKCYSKVGQVDEAIKLLSEMS-- 536

Query: 281 IPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVS 340
             +   P + V+  S  D ++  GR +    A Q+  +M+ + L P+  TY+  +  +  
Sbjct: 537 -KVQCEPDVIVIN-SLIDTLYKAGRVEE---AWQMFCRMEEMNLAPTVVTYNILLAGLGK 591

Query: 341 DRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP--- 397
           +  ++  +++ + M  +   P   T  TL     K  E+DLA  +  +++   N +P   
Sbjct: 592 EGQIQKAVQLFESMNGHGCSPNTITFNTLLDCLCKNDEVDLALKMFYKMT-TMNCRPDVL 650

Query: 398 -FSAFLAACDTMDKPERAIKIFAKMRQKLRPD--------------------IRTYELLF 436
            F+  +      ++ + AI +F +M++ LRPD                     R  E  F
Sbjct: 651 TFNTIIHGFIKQNQIKNAIWLFHQMKKLLRPDHVTLCTLLPGVIKSGQIEDAFRITEDFF 710

Query: 437 SLFG-NVNAPYEE---GNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGM 492
              G N++  + E   G + ++  + K I   E  + R   +   + +  ++K L     
Sbjct: 711 YQVGSNIDRSFWEDVMGGILTEAGTEKAILFGERLVCRAICKDDSVLIP-IIKVLCKHKK 769

Query: 493 IRELIQYFCDSKTPLGT-PT---YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYN 548
                  F      LG  PT   YN ++   +E      A  +F++MK+ G  P+  TYN
Sbjct: 770 TSVARNVFVKFTKELGVKPTLKVYNLLIDGFLEVHNVEVAWNLFEEMKSAGCAPDTFTYN 829

Query: 549 IMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNL-LDLVSL 607
            +ID             L   M+  G  P T+TY  +I  L+     D+A++L  +LVS 
Sbjct: 830 SLIDAHGKSGKINELFDLYDEMLTRGCKPNTITYNMVISNLVKSNRLDKAMDLYYNLVSG 889

Query: 608 EGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNS 667
           +  P     +  ++    + GR+D    + + M     +P+ +  + + +GY   G  ++
Sbjct: 890 DFSPTPC-TFGPLIDGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNILVNGYGKLGHVDT 948

Query: 668 AMEALQVLSMRMLCEEV 684
           A E  +    RM+ E +
Sbjct: 949 ACEFFK----RMVKEGI 961



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 90/381 (23%), Positives = 167/381 (43%), Gaps = 40/381 (10%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +FS ++ A G+ +N      L+ +M+S+GL+P+ +TY   IR +  D  +     ++K M
Sbjct: 231 TFSALMVASGKRRNIKTVMGLLEEMESMGLRPNIYTYTICIRVLGRDGKIDEAYRIMKRM 290

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALL----------DQISRCTNPKPFSAFLAA 404
             +   P   T   L      A +LD A  L           D+++  T    FS     
Sbjct: 291 DDDGCGPDVVTYTVLIDALCTARKLDDAMCLFTKMKSSSHKPDKVTYVTLLDKFSD---- 346

Query: 405 CDTMDKPERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNM---FSQVDSAKR 460
           C  +DK E   KI+ +M      PD+ T+ +L      VNA  + G +   F  +D+ ++
Sbjct: 347 CGHLDKVE---KIWTEMEADGYAPDVVTFTIL------VNALCKAGRINEAFDLLDTMRK 397

Query: 461 INAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPT-YNTVLHSL 519
              +       N+   +  +  LL+A      + + +  F + ++    PT Y  +L   
Sbjct: 398 QGVLP------NLHTYNTLISGLLRA----NRLDDALDLFSNMESLGVEPTAYTYILLID 447

Query: 520 VEAQESH--RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYP 577
              +  H  +A+E F++MK  GI PN    N  +   + +     A A+ + +   G  P
Sbjct: 448 YHGKSGHPGKALETFEKMKARGIAPNIVACNASLYSLAEMGRLGEAKAMFNELKSSGLAP 507

Query: 578 QTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFII 637
            ++TY  ++K     G  DEA+ LL  +S      DV++ N+++    + GR++    + 
Sbjct: 508 DSVTYNMMMKCYSKVGQVDEAIKLLSEMSKVQCEPDVIVINSLIDTLYKAGRVEEAWQMF 567

Query: 638 EQMHQNKVQPDPSTCHFVFSG 658
            +M +  + P   T + + +G
Sbjct: 568 CRMEEMNLAPTVVTYNILLAG 588



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 107/486 (22%), Positives = 195/486 (40%), Gaps = 31/486 (6%)

Query: 181 LDLMDSRMVGKNEVTYTELLKLAVWQKNL----SAVHEIWEDYIKHYSLSIFSLRKFVWS 236
            DLM  +++ +N  TY  + K    +  L    SA+ ++ E     + L+ +S    +  
Sbjct: 147 FDLMQRQIIRRNVDTYLIIFKSLFIRGGLRQAPSALEKMRE---AGFVLNAYSYNGLIHF 203

Query: 237 FTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSS--RLDIPIPLNALPVMKVLR- 293
             +    K A E  + MV+  +   L   +T    + +S  R +I   +  L  M+ +  
Sbjct: 204 LLQSGFCKEALEVYRRMVSEGLKPSL---KTFSALMVASGKRRNIKTVMGLLEEMESMGL 260

Query: 294 ----WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGME 349
               ++++  I   GR      A ++M +M   G  P   TY   I A+ + R L + M 
Sbjct: 261 RPNIYTYTICIRVLGRDGKIDEAYRIMKRMDDDGCGPDVVTYTVLIDALCTARKLDDAMC 320

Query: 350 VLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMD 409
           +   M+ ++ KP   T  TL  + S    LD  E +  ++           F    + + 
Sbjct: 321 LFTKMKSSSHKPDKVTYVTLLDKFSDCGHLDKVEKIWTEMEADGYAPDVVTFTILVNALC 380

Query: 410 KPER---AIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIE 465
           K  R   A  +   MR Q + P++ TY  L S     N   +  ++FS ++S        
Sbjct: 381 KAGRINEAFDLLDTMRKQGVLPNLHTYNTLISGLLRANRLDDALDLFSNMES-------- 432

Query: 466 MDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQES 525
             +      +++I + +     G  G   E  +              N  L+SL E    
Sbjct: 433 --LGVEPTAYTYILLIDYHGKSGHPGKALETFEKMKARGIAPNIVACNASLYSLAEMGRL 490

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
             A  +F ++K+ G+ P++ TYN+M+ C S +     A  L+S M +    P  +   +L
Sbjct: 491 GEAKAMFNELKSSGLAPDSVTYNMMMKCYSKVGQVDEAIKLLSEMSKVQCEPDVIVINSL 550

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           I  L   G  +EA  +   +    +   V+ YN +L    ++G+I     + E M+ +  
Sbjct: 551 IDTLYKAGRVEEAWQMFCRMEEMNLAPTVVTYNILLAGLGKEGQIQKAVQLFESMNGHGC 610

Query: 646 QPDPST 651
            P+  T
Sbjct: 611 SPNTIT 616



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 73/367 (19%), Positives = 138/367 (37%), Gaps = 76/367 (20%)

Query: 318 QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKAL 377
           +M+  G   ++++Y+G I  ++     +  +EV + M    LKP   T + L V   K  
Sbjct: 184 KMREAGFVLNAYSYNGLIHFLLQSGFCKEALEVYRRMVSEGLKPSLKTFSALMVASGKRR 243

Query: 378 ELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFS 437
            +     LL+++                                   LRP+I TY +   
Sbjct: 244 NIKTVMGLLEEMES-------------------------------MGLRPNIYTYTICIR 272

Query: 438 LFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELI 497
           + G       +G    ++D A RI                      +K +  +G   +++
Sbjct: 273 VLG------RDG----KIDEAYRI----------------------MKRMDDDGCGPDVV 300

Query: 498 QYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSII 557
                        TY  ++ +L  A++   AM +F +MK+    P+  TY  ++D  S  
Sbjct: 301 -------------TYTVLIDALCTARKLDDAMCLFTKMKSSSHKPDKVTYVTLLDKFSDC 347

Query: 558 RCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLY 617
                   + + M  DG+ P  +T+T L+  L   G  +EA +LLD +  +G+  ++  Y
Sbjct: 348 GHLDKVEKIWTEMEADGYAPDVVTFTILVNALCKAGRINEAFDLLDTMRKQGVLPNLHTY 407

Query: 618 NTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSM 677
           NT++       R+D    +   M    V+P   T   +   +   G    A+E  + +  
Sbjct: 408 NTLISGLLRANRLDDALDLFSNMESLGVEPTAYTYILLIDYHGKSGHPGKALETFEKMKA 467

Query: 678 RMLCEEV 684
           R +   +
Sbjct: 468 RGIAPNI 474



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 131/680 (19%), Positives = 253/680 (37%), Gaps = 131/680 (19%)

Query: 55   TQMQIVDALCRGERSRASHLLLNLGHAHHSLGAD----DFFHILNYCARSPDPLFVMETW 110
            T   ++  L R  R   +   L+L     SLG +     +  +++Y  +S  P   +ET+
Sbjct: 406  TYNTLISGLLRANRLDDA---LDLFSNMESLGVEPTAYTYILLIDYHGKSGHPGKALETF 462

Query: 111  RMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAK 170
              M+ + I  N       + +L + G L EA  +   L +  G+ P    YN  +   +K
Sbjct: 463  EKMKARGIAPNIVACNASLYSLAEMGRLGEAKAMFNEL-KSSGLAPDSVTYNMMMKCYSK 521

Query: 171  LHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSL 230
            +  +  A   L  M S++  + +V     L   +++     V E W+             
Sbjct: 522  VGQVDEAIKLLSEM-SKVQCEPDVIVINSLIDTLYKA--GRVEEAWQ------------- 565

Query: 231  RKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMK 290
                  F R+ ++  A   + + + LA +GK       EG+++ + + +   +N      
Sbjct: 566  -----MFCRMEEMNLAPTVVTYNILLAGLGK-------EGQIQKA-VQLFESMNGHGCSP 612

Query: 291  VLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEV 350
                +F+ ++    +     LA ++  +M ++  +P   T++  I   +    ++N + +
Sbjct: 613  N-TITFNTLLDCLCKNDEVDLALKMFYKMTTMNCRPDVLTFNTIIHGFIKQNQIKNAIWL 671

Query: 351  LKIMQQNNLKPQDSTIATLSVECSKALELD----LAEALLDQISRCTNPKPFSAFLAACD 406
               M++  L+P   T+ TL     K+ +++    + E    Q+    +   +   +    
Sbjct: 672  FHQMKKL-LRPDHVTLCTLLPGVIKSGQIEDAFRITEDFFYQVGSNIDRSFWEDVMGGIL 730

Query: 407  TMDKPERAI-----------------------------------KIFAKMRQKL--RPDI 429
            T    E+AI                                    +F K  ++L  +P +
Sbjct: 731  TEAGTEKAILFGERLVCRAICKDDSVLIPIIKVLCKHKKTSVARNVFVKFTKELGVKPTL 790

Query: 430  RTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGA 489
            + Y LL   F  V+      N+F ++ SA                    +  +L+ A G 
Sbjct: 791  KVYNLLIDGFLEVHNVEVAWNLFEEMKSA-------------GCAPDTFTYNSLIDAHGK 837

Query: 490  EGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAM----------------- 529
             G I EL   + +  T    P   TYN V+ +LV++    +AM                 
Sbjct: 838  SGKINELFDLYDEMLTRGCKPNTITYNMVISNLVKSNRLDKAMDLYYNLVSGDFSPTPCT 897

Query: 530  ------------------EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
                              E+F  M   G  PN+A YNI+++    +    +A      MV
Sbjct: 898  FGPLIDGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNILVNGYGKLGHVDTACEFFKRMV 957

Query: 572  RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
            ++G  P   +YT L+ IL   G  D+AL+  + +   G+  D++ YN ++       R +
Sbjct: 958  KEGIRPDLKSYTILVDILCIAGRVDDALHYFEKLKQAGLDPDLVAYNLMINGLGRSQRTE 1017

Query: 632  VIEFIIEQMHQNKVQPDPST 651
                +  +M    + PD  T
Sbjct: 1018 EALSLFHEMQNRGIVPDLYT 1037



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 60/299 (20%), Positives = 127/299 (42%), Gaps = 20/299 (6%)

Query: 294  WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
            ++++ +I A G++        L  +M + G +P++ TY+  I  +V    L   M++   
Sbjct: 826  FTYNSLIDAHGKSGKINELFDLYDEMLTRGCKPNTITYNMVISNLVKSNRLDKAMDLYYN 885

Query: 354  MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR--C-TNPKPFSAFLAACDTMDK 410
            +   +  P   T   L     K+  LD A  + D +    C  N   ++  +     +  
Sbjct: 886  LVSGDFSPTPCTFGPLIDGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNILVNGYGKLGH 945

Query: 411  PERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
             + A + F +M ++ +RPD+++Y +L  +        +  + F ++  A     ++ D+ 
Sbjct: 946  VDTACEFFKRMVKEGIRPDLKSYTILVDILCIAGRVDDALHYFEKLKQA----GLDPDLV 1001

Query: 470  RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESH 526
              N+         ++  LG      E +  F + +     P   TYN+++ +L       
Sbjct: 1002 AYNL---------MINGLGRSQRTEEALSLFHEMQNRGIVPDLYTYNSLILNLGIVGMIE 1052

Query: 527  RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
             A +I+++++  G+ PN  TYN +I   ++    + A  +   M+  G  P T T+  L
Sbjct: 1053 EAGKIYEELQFIGLKPNVFTYNALIRGYTLSGNSELAYGIYKKMMVGGCDPNTGTFAQL 1111



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 78/373 (20%), Positives = 138/373 (36%), Gaps = 53/373 (14%)

Query: 283  LNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDR 342
            L   P +KV    ++ +I       N  +A  L  +M+S G  P + TY+  I A     
Sbjct: 784  LGVKPTLKV----YNLLIDGFLEVHNVEVAWNLFEEMKSAGCAPDTFTYNSLIDAHGKSG 839

Query: 343  GLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALL-DQISRCTNPKP--FS 399
             +    ++   M     KP   T   +     K+  LD A  L  + +S   +P P  F 
Sbjct: 840  KINELFDLYDEMLTRGCKPNTITYNMVISNLVKSNRLDKAMDLYYNLVSGDFSPTPCTFG 899

Query: 400  AFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSA 458
              +       + + A ++F  M     RP+   Y +L + +G +            VD+A
Sbjct: 900  PLIDGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNILVNGYGKL----------GHVDTA 949

Query: 459  KRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHS 518
                                      K +  EG+  +L              +Y  ++  
Sbjct: 950  CE----------------------FFKRMVKEGIRPDL-------------KSYTILVDI 974

Query: 519  LVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQ 578
            L  A     A+  F+++K  G+ P+   YN+MI+     +  + A +L   M   G  P 
Sbjct: 975  LCIAGRVDDALHYFEKLKQAGLDPDLVAYNLMINGLGRSQRTEEALSLFHEMQNRGIVPD 1034

Query: 579  TMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIE 638
              TY +LI  L   G  +EA  + + +   G+  +V  YN +++     G  ++   I +
Sbjct: 1035 LYTYNSLILNLGIVGMIEEAGKIYEELQFIGLKPNVFTYNALIRGYTLSGNSELAYGIYK 1094

Query: 639  QMHQNKVQPDPST 651
            +M      P+  T
Sbjct: 1095 KMMVGGCDPNTGT 1107



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 74/175 (42%), Gaps = 4/175 (2%)

Query: 489  AEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYN 548
            A  M   ++ Y C   + +    YN +++   +      A E FK+M   GI P+  +Y 
Sbjct: 914  AHEMFDGMVHYGCRPNSAI----YNILVNGYGKLGHVDTACEFFKRMVKEGIRPDLKSYT 969

Query: 549  IMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLE 608
            I++D   I      A      + + G  P  + Y  +I  L      +EAL+L   +   
Sbjct: 970  ILVDILCIAGRVDDALHYFEKLKQAGLDPDLVAYNLMINGLGRSQRTEEALSLFHEMQNR 1029

Query: 609  GIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
            GI  D+  YN+++      G I+    I E++    ++P+  T + +  GY   G
Sbjct: 1030 GIVPDLYTYNSLILNLGIVGMIEEAGKIYEELQFIGLKPNVFTYNALIRGYTLSG 1084


>gi|449518511|ref|XP_004166285.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic-like [Cucumis sativus]
          Length = 868

 Score = 92.8 bits (229), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 121/280 (43%), Gaps = 16/280 (5%)

Query: 398 FSAFLAACDTMDKPERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVD 456
           FSA ++A       + AIK+F  M+   L+P++ TY  +    G     +          
Sbjct: 225 FSALISAYGKSGYFDEAIKVFESMKVSGLKPNLVTYNAVIDACGKGGVEF---------- 274

Query: 457 SAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGM---IRELIQYFCDSKTPLGTPTYN 513
             KR+  I  +M RN +Q   I+  +LL      G+    R L     D        TYN
Sbjct: 275 --KRVVEIFEEMLRNGVQPDRITYNSLLAVCSRGGLWEAARNLFNEMIDRGIDQDVFTYN 332

Query: 514 TVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRD 573
           T+L ++ +  +   A EI  +M    I PN  TY+ M D  +     + A  L + M   
Sbjct: 333 TLLDAVCKGGQMDLAYEIMLEMPGKKILPNVVTYSTMADGYAKAGRLEDALNLYNEMKFL 392

Query: 574 GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVI 633
           G     ++Y  L+ I    G F++AL +   +   G+  DV+ YN +L    ++G+ + +
Sbjct: 393 GIGLDRVSYNTLLSIYAKLGRFEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEV 452

Query: 634 EFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
             + ++M +++V P+  T   +   Y     +  AME  +
Sbjct: 453 TRVFKEMKKDRVFPNLLTYSTLIDVYSKGSLYEEAMEVFR 492



 Score = 82.4 bits (202), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 86/426 (20%), Positives = 173/426 (40%), Gaps = 44/426 (10%)

Query: 297 SDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQ 356
           S +I   GR     LA+ +     S G   +   +   I A          ++V + M+ 
Sbjct: 191 SAMISTLGRLGKVELAKGVFETALSEGYGNTVFAFSALISAYGKSGYFDEAIKVFESMKV 250

Query: 357 NNLKPQDSTIATLSVECSKA-LELDLAEALLDQISRCTNPKP----FSAFLAACDTMDKP 411
           + LKP   T   +   C K  +E      + +++ R    +P    +++ LA C      
Sbjct: 251 SGLKPNLVTYNAVIDACGKGGVEFKRVVEIFEEMLR-NGVQPDRITYNSLLAVCSRGGLW 309

Query: 412 ERAIKIFAKMRQK-LRPDIRTYELLFSLF---GNVNAPYEEGNMFSQVDSAKRINAIEMD 467
           E A  +F +M  + +  D+ TY  L       G ++  YE                I ++
Sbjct: 310 EAARNLFNEMIDRGIDQDVFTYNTLLDAVCKGGQMDLAYE----------------IMLE 353

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSK---TPLGTPTYNTVLHSLVEAQE 524
           M    I  + ++   +       G + + +  + + K     L   +YNT+L    +   
Sbjct: 354 MPGKKILPNVVTYSTMADGYAKAGRLEDALNLYNEMKFLGIGLDRVSYNTLLSIYAKLGR 413

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
              A+++ K+M + G+  +  TYN ++D       F   + +   M +D  +P  +TY+ 
Sbjct: 414 FEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKEMKKDRVFPNLLTYST 473

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
           LI +      ++EA+ +       G+  DV+LY+ ++   C+ G +D    ++++M +  
Sbjct: 474 LIDVYSKGSLYEEAMEVFREFKQAGLKADVVLYSELINALCKNGLVDSAVLLLDEMTKEG 533

Query: 645 VQPDPSTCHFVFSGYVNCGFHNSAMEAL-QVLSMRMLCEEVSTLEEKRSDFEDLILAEDS 703
           ++P+  T             +NS ++A  +  +   L + V    E++S+    +L E  
Sbjct: 534 IRPNVVT-------------YNSIIDAFGRSTTAEFLVDGVGASNERQSESPTFMLIEGV 580

Query: 704 EAESRI 709
           + ES I
Sbjct: 581 D-ESEI 585



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 87/380 (22%), Positives = 168/380 (44%), Gaps = 38/380 (10%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRG---LRNGMEV 350
           ++FS +I A G++     A ++   M+  GL+P+  TY+  I A    +G    +  +E+
Sbjct: 223 FAFSALISAYGKSGYFDEAIKVFESMKVSGLKPNLVTYNAVIDAC--GKGGVEFKRVVEI 280

Query: 351 LKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPKPFS--AFLAACDT 407
            + M +N ++P   T  +L   CS+    + A  L ++ I R  +   F+    L A   
Sbjct: 281 FEEMLRNGVQPDRITYNSLLAVCSRGGLWEAARNLFNEMIDRGIDQDVFTYNTLLDAVCK 340

Query: 408 MDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM 466
             + + A +I  +M  +K+ P++ TY  +   +       +  N+++++    +   I +
Sbjct: 341 GGQMDLAYEIMLEMPGKKILPNVVTYSTMADGYAKAGRLEDALNLYNEM----KFLGIGL 396

Query: 467 DMARNNIQHSHISMK--------NLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHS 518
           D    N   S I  K         + K +G+ G+ ++++             TYN +L  
Sbjct: 397 DRVSYNTLLS-IYAKLGRFEDALKVCKEMGSSGVKKDVV-------------TYNALLDG 442

Query: 519 LVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQ 578
             +  + +    +FK+MK   + PN  TY+ +ID  S    ++ A  +     + G    
Sbjct: 443 YGKQGKFNEVTRVFKEMKKDRVFPNLLTYSTLIDVYSKGSLYEEAMEVFREFKQAGLKAD 502

Query: 579 TMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIE 638
            + Y+ LI  L   G  D A+ LLD ++ EGI  +V+ YN+I+      GR    EF+++
Sbjct: 503 VVLYSELINALCKNGLVDSAVLLLDEMTKEGIRPNVVTYNSIIDAF---GRSTTAEFLVD 559

Query: 639 QMHQNKVQPDPSTCHFVFSG 658
            +  +  +   S    +  G
Sbjct: 560 GVGASNERQSESPTFMLIEG 579



 Score = 48.1 bits (113), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 91/469 (19%), Positives = 187/469 (39%), Gaps = 46/469 (9%)

Query: 119 GLNNKCYLL--MMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVH 176
           G  N  +    ++ A  K GY +EA  +   + +  G+ P L  YN+ + AC K    V 
Sbjct: 217 GYGNTVFAFSALISAYGKSGYFDEAIKVFESM-KVSGLKPNLVTYNAVIDACGK--GGVE 273

Query: 177 ANLCLDLMDSRM---VGKNEVTYTELLKL----AVWQKNLSAVHEIWEDYIKHYSLSIFS 229
               +++ +  +   V  + +TY  LL +     +W+   +  +E+ +  I      +F+
Sbjct: 274 FKRVVEIFEEMLRNGVQPDRITYNSLLAVCSRGGLWEAARNLFNEMIDRGIDQ---DVFT 330

Query: 230 LRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRT-SEGRLRSSRLDIPIPLNALPV 288
               + +  +   +  AYE +  M    ++  +    T ++G  ++ RL+    LN    
Sbjct: 331 YNTLLDAVCKGGQMDLAYEIMLEMPGKKILPNVVTYSTMADGYAKAGRLE--DALNLYNE 388

Query: 289 MKVL-----RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRG 343
           MK L     R S++ ++    +      A ++  +M S G++    TY+  +        
Sbjct: 389 MKFLGIGLDRVSYNTLLSIYAKLGRFEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGK 448

Query: 344 LRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRC---TNPKPFSA 400
                 V K M+++ + P   T +TL    SK    + A  +  +  +     +   +S 
Sbjct: 449 FNEVTRVFKEMKKDRVFPNLLTYSTLIDVYSKGSLYEEAMEVFREFKQAGLKADVVLYSE 508

Query: 401 FLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFG-NVNAPYEEGNMFSQVDSA 458
            + A       + A+ +  +M ++ +RP++ TY  +   FG +  A +    + +   S 
Sbjct: 509 LINALCKNGLVDSAVLLLDEMTKEGIRPNVVTYNSIIDAFGRSTTAEFLVDGVGA---SN 565

Query: 459 KRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHS 518
           +R +     M    +  S I+          +G + +  Q     K     P     L  
Sbjct: 566 ERQSESPTFMLIEGVDESEINWD--------DGHVFKFYQQLVSEKE---GPAKKERLGK 614

Query: 519 LVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALV 567
               +E    + +FK+M    I PN  T++ +++ CS  +  + AS L+
Sbjct: 615 ----EEIRSILSVFKKMHELEIKPNVVTFSAILNACSRCKSIEDASMLL 659



 Score = 47.0 bits (110), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 56/298 (18%), Positives = 114/298 (38%), Gaps = 49/298 (16%)

Query: 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
           R +++ ++  C R      A  L  +M   G+     TY+  + A+     +    E++ 
Sbjct: 293 RITYNSLLAVCSRGGLWEAARNLFNEMIDRGIDQDVFTYNTLLDAVCKGGQMDLAYEIML 352

Query: 353 IMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ---ISRCTNPKPFSAFLAACDTMD 409
            M    + P   T +T++   +KA  L+ A  L ++   +    +   ++  L+    + 
Sbjct: 353 EMPGKKILPNVVTYSTMADGYAKAGRLEDALNLYNEMKFLGIGLDRVSYNTLLSIYAKLG 412

Query: 410 KPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
           + E A+K+  +M    ++ D+ TY  L   +G      E   +F +             M
Sbjct: 413 RFEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKE-------------M 459

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRA 528
            ++ +        NLL                          TY+T++    +      A
Sbjct: 460 KKDRV------FPNLL--------------------------TYSTLIDVYSKGSLYEEA 487

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
           ME+F++ K  G+  +   Y+ +I+         SA  L+  M ++G  P  +TY ++I
Sbjct: 488 MEVFREFKQAGLKADVVLYSELINALCKNGLVDSAVLLLDEMTKEGIRPNVVTYNSII 545


>gi|326487476|dbj|BAJ89722.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 805

 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 60/260 (23%), Positives = 117/260 (45%), Gaps = 16/260 (6%)

Query: 396 KPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQ 454
           + ++  L A     + ERA+++F ++R++ + P   TY ++  ++G +            
Sbjct: 184 RAYTTVLHALSREGRYERALRLFDELRREGVAPTRVTYNVVLDVYGRMG----------- 232

Query: 455 VDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---T 511
             S  R+ A+  DM    ++    +   ++ A G +G++ E + +F D K     P   T
Sbjct: 233 -RSWPRVVALLADMRAAGVEPDGFTASTVIAAAGRDGLVDEAVAFFEDLKARGHAPCVVT 291

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           YN +L    +A     A+ + ++M+  G  P+A TYN +    +    ++ A+  +  M+
Sbjct: 292 YNALLQVFGKAGNYTEALRVLREMEDAGCKPDAVTYNELAGSYARAGFYQEAAKCIDTMI 351

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
             G  P T TY  ++    + G  DEAL L D +   G       YN +L    +K R  
Sbjct: 352 GKGLLPNTFTYNTIMTAYGNAGKVDEALALFDRMKKNGFIPYTNTYNLVLGMLGKKSRFA 411

Query: 632 VIEFIIEQMHQNKVQPDPST 651
            +  ++ +M ++   P+  T
Sbjct: 412 AMLEMLGEMSRSGCTPNRVT 431



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 86/405 (21%), Positives = 166/405 (40%), Gaps = 30/405 (7%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           ++ S VI A GR      A      +++ G  P   TY+  ++           + VL+ 
Sbjct: 255 FTASTVIAAAGRDGLVDEAVAFFEDLKARGHAPCVVTYNALLQVFGKAGNYTEALRVLRE 314

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPKPFS--AFLAACDTMDK 410
           M+    KP   T   L+   ++A     A   +D  I +   P  F+    + A     K
Sbjct: 315 MEDAGCKPDAVTYNELAGSYARAGFYQEAAKCIDTMIGKGLLPNTFTYNTIMTAYGNAGK 374

Query: 411 PERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM--D 467
            + A+ +F +M++    P   TY L+  + G                 ++    +EM  +
Sbjct: 375 VDEALALFDRMKKNGFIPYTNTYNLVLGMLGK---------------KSRFAAMLEMLGE 419

Query: 468 MARNNIQHSHISMKNLLKALGAEGM---IRELIQYFCDSKTPLGTPTYNTVLHSLVEAQE 524
           M+R+    + ++   LL   G  GM   +  +++     K  L   TYNT++ +      
Sbjct: 420 MSRSGCTPNRVTWNTLLAVCGKRGMESYVTRVLEGMKSCKVELCRDTYNTLICAYGRCGS 479

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
              A +++ +M   G  P   TYN +++  S    + +A ++VS M  +GF P  M+Y+ 
Sbjct: 480 RANAFKMYDEMTAAGFAPCLTTYNALLNVLSRQGDWTAARSIVSKMKSEGFKPNDMSYSL 539

Query: 585 LIKILLDYGDFDEALNLLDLVSLEG--IPHDVLLYNTILKK-ACEKGRIDVIEFIIEQMH 641
           L++     G+    +  ++    +G   P  V+L   ++    C   R++ IE   +++ 
Sbjct: 540 LLQCHAKGGN-AAGIEAIEKEVYQGNIFPSWVILRTLVIANFKCR--RLEGIERAFQEVK 596

Query: 642 QNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
               +PD    + + S Y   G ++ AME  + +    L  ++ T
Sbjct: 597 ARGHKPDLVILNSMLSIYAKNGLYSKAMEMFESIEQLGLSPDLIT 641



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 89/418 (21%), Positives = 164/418 (39%), Gaps = 70/418 (16%)

Query: 278 DIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRA 337
           ++P+P    P  ++   +++ V+HA  R      A +L  +++  G+ P+  TY+     
Sbjct: 172 EMPLP----PGARLDVRAYTTVLHALSREGRYERALRLFDELRREGVAPTRVTYN----- 222

Query: 338 IVSDRGLRNG------MEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI-S 390
           +V D   R G      + +L  M+   ++P   T +T+     +   +D A A  + + +
Sbjct: 223 VVLDVYGRMGRSWPRVVALLADMRAAGVEPDGFTASTVIAAAGRDGLVDEAVAFFEDLKA 282

Query: 391 RCTNP--KPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYE 447
           R   P    ++A L           A+++  +M     +PD  TY  L   +        
Sbjct: 283 RGHAPCVVTYNALLQVFGKAGNYTEALRVLREMEDAGCKPDAVTYNELAGSYARAG---- 338

Query: 448 EGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPL 507
               F Q ++AK I+     M    +  +  +   ++ A G  G + E +  F   K   
Sbjct: 339 ----FYQ-EAAKCIDT----MIGKGLLPNTFTYNTIMTAYGNAGKVDEALALFDRMKKNG 389

Query: 508 GTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC----------- 553
             P   TYN VL  L +       +E+  +M   G  PN  T+N ++             
Sbjct: 390 FIPYTNTYNLVLGMLGKKSRFAAMLEMLGEMSRSGCTPNRVTWNTLLAVCGKRGMESYVT 449

Query: 554 ----------------------CSIIRCFKSASA--LVSMMVRDGFYPQTMTYTALIKIL 589
                                 C+  RC   A+A  +   M   GF P   TY AL+ +L
Sbjct: 450 RVLEGMKSCKVELCRDTYNTLICAYGRCGSRANAFKMYDEMTAAGFAPCLTTYNALLNVL 509

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
              GD+  A +++  +  EG   + + Y+ +L+   + G    IE I ++++Q  + P
Sbjct: 510 SRQGDWTAARSIVSKMKSEGFKPNDMSYSLLLQCHAKGGNAAGIEAIEKEVYQGNIFP 567



 Score = 52.4 bits (124), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 82/407 (20%), Positives = 161/407 (39%), Gaps = 37/407 (9%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           ++++ ++ A G       A  L  +M+  G  P ++TY+  +  +         +E+L  
Sbjct: 360 FTYNTIMTAYGNAGKVDEALALFDRMKKNGFIPYTNTYNLVLGMLGKKSRFAAMLEMLGE 419

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNP---KPFSAFLAACDTMDK 410
           M ++   P   T  TL   C K         +L+ +  C        ++  + A      
Sbjct: 420 MSRSGCTPNRVTWNTLLAVCGKRGMESYVTRVLEGMKSCKVELCRDTYNTLICAYGRCGS 479

Query: 411 PERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAK-RINAIEMDM 468
              A K++ +M      P + TY  L ++           ++ S++ S   + N    DM
Sbjct: 480 RANAFKMYDEMTAAGFAPCLTTYNALLNVLSRQGDWTAARSIVSKMKSEGFKPN----DM 535

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGT--PTYNTVLHSLVEAQESH 526
           + + +   H    N   A G E + +E+ Q         G   P++  +L +LV A    
Sbjct: 536 SYSLLLQCHAKGGN---AAGIEAIEKEVYQ---------GNIFPSW-VILRTLVIANFKC 582

Query: 527 RAME----IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTY 582
           R +E     F+++K  G  P+    N M+   +    +  A  +   + + G  P  +TY
Sbjct: 583 RRLEGIERAFQEVKARGHKPDLVILNSMLSIYAKNGLYSKAMEMFESIEQLGLSPDLITY 642

Query: 583 TALIKILLDYGDFDEALNLLDLV---------SLEGIPHDVLLYNTILKKACEKGRIDVI 633
            +L+ +     +  EA  +L+ +           + +  DV+ YNT++   C++G I   
Sbjct: 643 NSLMDMYAKSNEPWEAEKILNRLRSSQSQQQQQQQQLKPDVVSYNTVINGFCKEGLIKEA 702

Query: 634 EFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRML 680
           + ++ +M  + V P   T H +  GY +      A E +  +  R L
Sbjct: 703 QRVLSEMIADGVAPCVITYHTLVGGYASREMFAEAREVVGYMIQRKL 749


>gi|357139229|ref|XP_003571186.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Brachypodium distachyon]
          Length = 628

 Score = 92.4 bits (228), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 100/432 (23%), Positives = 169/432 (39%), Gaps = 61/432 (14%)

Query: 287 PVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRN 346
           PV  V     SD+I   G  +    A  +  Q++    QP++  Y+  I  ++ +     
Sbjct: 149 PVCVVTPMELSDIIRMLGNAKMISKAVAIFYQIKVRKCQPTAQAYNSMIIMLMHEGQYEK 208

Query: 347 GMEVLKIM-QQNNLKPQDSTIATLSVECSKALELDLAEALLDQI---SRCTNPKPFSAFL 402
             E+   M  + +  P   T + L     K    D A  LL+++         K ++  +
Sbjct: 209 VHELYNEMSNEGHCFPDTVTYSALISAFCKLGRQDSAIRLLNEMKDNGMQPTAKIYTMLI 268

Query: 403 AACDTMDKPERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI 461
           A    ++    A+ +F +MR Q  RPD+ TY  L    G      E  N F +       
Sbjct: 269 ALFFKLNNVHGALGLFEEMRHQYCRPDVFTYTELIRGLGKAGRFDEAYNFFHE------- 321

Query: 462 NAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHS 518
                 M R   +   + + N++  LG  G + + ++ F +  T    P   TYNT++ +
Sbjct: 322 ------MRREGCRPDTVVINNMINFLGKAGRLDDAVKLFEEMGTLQCIPSVVTYNTIIKA 375

Query: 519 LVEAQESHRAMEI---FKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGF 575
           L E++   R  EI   F++MK  GI P+  TY+I+ID        + A  L+  M   GF
Sbjct: 376 LFESKS--RISEISSWFERMKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGF 433

Query: 576 YP-----------------------------------QTMTYTALIKILLDYGDFDEALN 600
            P                                       Y  +IK L   G  D+A+N
Sbjct: 434 PPCPAAYCSLIDALGKAKRYDIAHELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAVN 493

Query: 601 LLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYV 660
           L D ++  G   +V  YN ++      G +D     + +M ++   PD ++ + + +G  
Sbjct: 494 LFDEMNKLGCTPNVYAYNALMSGLARAGMLDEALTTMRRMQEHGCIPDINSYNIILNGLA 553

Query: 661 NCGFHNSAMEAL 672
             G  + AME L
Sbjct: 554 KTGGPHRAMEML 565



 Score = 63.2 bits (152), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 66/301 (21%), Positives = 128/301 (42%), Gaps = 21/301 (6%)

Query: 297 SDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRG-LRNGMEVLKIMQ 355
           +++I+  G+      A +L  +M +L   PS  TY+  I+A+   +  +       + M+
Sbjct: 335 NNMINFLGKAGRLDDAVKLFEEMGTLQCIPSVVTYNTIIKALFESKSRISEISSWFERMK 394

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPER-- 413
            + + P   T + L     K    + A  LL+++     P   +A+ +  D + K +R  
Sbjct: 395 GSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYD 454

Query: 414 -AIKIFAKMRQKL-RPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471
            A ++F ++++       R Y ++    G      +  N+F   D   ++       A N
Sbjct: 455 IAHELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAVNLF---DEMNKLGCTPNVYAYN 511

Query: 472 NIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRA 528
                      L+  L   GM+ E +      +     P   +YN +L+ L +    HRA
Sbjct: 512 A----------LMSGLARAGMLDEALTTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRA 561

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
           ME+   MK   I P+A +YN ++   S    F+ A+ L+  M   GF    +TY+++++ 
Sbjct: 562 MEMLSNMKQSAIKPDAVSYNTVLGAMSHAGLFEEAAKLMKEMNVLGFEYDLITYSSILEA 621

Query: 589 L 589
           +
Sbjct: 622 I 622



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 82/390 (21%), Positives = 161/390 (41%), Gaps = 18/390 (4%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCL-DL 183
           Y  ++ A CK G  + A  L+  + +  G+ P   +Y   +    KL++ VH  L L + 
Sbjct: 229 YSALISAFCKLGRQDSAIRLLNEMKDN-GMQPTAKIYTMLIALFFKLNN-VHGALGLFEE 286

Query: 184 MDSRMVGKNEVTYTELL----KLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTR 239
           M  +    +  TYTEL+    K   + +  +  HE+  +  +  ++ I ++  F+    R
Sbjct: 287 MRHQYCRPDVFTYTELIRGLGKAGRFDEAYNFFHEMRREGCRPDTVVINNMINFLGKAGR 346

Query: 240 LRDLKSAYE---TLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSF 296
           L D    +E   TLQ + ++     + I    E + R S +           +    +++
Sbjct: 347 LDDAVKLFEEMGTLQCIPSVVTYNTI-IKALFESKSRISEISSWFERMKGSGISPSPFTY 405

Query: 297 SDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQ 356
           S +I    +T  +  A  L+ +M   G  P    Y   I A+   +      E+ + +++
Sbjct: 406 SILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDIAHELFQELKE 465

Query: 357 NNLKPQDSTIATLSVECSKALELDLAEALLDQISR--CT-NPKPFSAFLAACDTMDKPER 413
           N         A +     KA  LD A  L D++++  CT N   ++A ++        + 
Sbjct: 466 NCGSSSARVYAVMIKHLGKAGRLDDAVNLFDEMNKLGCTPNVYAYNALMSGLARAGMLDE 525

Query: 414 AIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQV-DSAKRINAIEMDMARN 471
           A+    +M++    PDI +Y ++ +       P+    M S +  SA + +A+  +    
Sbjct: 526 ALTTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSAIKPDAVSYNTVLG 585

Query: 472 NIQHSHI--SMKNLLKALGAEGMIRELIQY 499
            + H+ +      L+K +   G   +LI Y
Sbjct: 586 AMSHAGLFEEAAKLMKEMNVLGFEYDLITY 615


>gi|254939549|ref|NP_001157212.1| pentatricopeptide repeat10 [Zea mays]
 gi|218684531|gb|ACL01094.1| chloroplast pentatricopeptide repeat protein 10 [Zea mays]
 gi|223948163|gb|ACN28165.1| unknown [Zea mays]
 gi|413943497|gb|AFW76146.1| pentatricopeptide repeat10 [Zea mays]
          Length = 786

 Score = 92.4 bits (228), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 63/260 (24%), Positives = 117/260 (45%), Gaps = 16/260 (6%)

Query: 396 KPFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQ 454
           + ++  L A     + ERA+++FA++ RQ + P + TY ++  ++G +            
Sbjct: 175 RAYTTVLHALSRAGRYERALELFAELRRQGVAPTLVTYNVVLDVYGRMG----------- 223

Query: 455 VDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---T 511
             S  RI A+  +M    ++    +   ++ A   +G++ E + +F D K     P   T
Sbjct: 224 -RSWPRIVALLDEMRAAGVEPDGFTASTVIAACCRDGLVDEAVAFFEDLKARGHAPCVVT 282

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           YN +L    +A     A+ +  +M+  G  P+A TYN +    +    F+ A+  +  M 
Sbjct: 283 YNALLQVFGKAGNYTEALRVLGEMEQNGCQPDAVTYNELAGTYARAGFFEEAARCLDTMA 342

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
             G  P   TY  ++    + G  DEAL L D +   G   +V  YN +L    +K R  
Sbjct: 343 SKGLLPNAFTYNTVMTAYGNVGKVDEALALFDQMKKTGFVPNVNTYNLVLGMLGKKSRFT 402

Query: 632 VIEFIIEQMHQNKVQPDPST 651
           V+  ++ +M ++   P+  T
Sbjct: 403 VMLEMLGEMSRSGCTPNRVT 422



 Score = 85.9 bits (211), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 85/405 (20%), Positives = 166/405 (40%), Gaps = 29/405 (7%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           ++ S VI AC R      A      +++ G  P   TY+  ++           + VL  
Sbjct: 246 FTASTVIAACCRDGLVDEAVAFFEDLKARGHAPCVVTYNALLQVFGKAGNYTEALRVLGE 305

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI-SRCTNPKPFS--AFLAACDTMDK 410
           M+QN  +P   T   L+   ++A   + A   LD + S+   P  F+    + A   + K
Sbjct: 306 MEQNGCQPDAVTYNELAGTYARAGFFEEAARCLDTMASKGLLPNAFTYNTVMTAYGNVGK 365

Query: 411 PERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM--D 467
            + A+ +F +M++    P++ TY L+  + G                 ++    +EM  +
Sbjct: 366 VDEALALFDQMKKTGFVPNVNTYNLVLGMLGK---------------KSRFTVMLEMLGE 410

Query: 468 MARNNIQHSHISMKNLLKALGAEGM---IRELIQYFCDSKTPLGTPTYNTVLHSLVEAQE 524
           M+R+    + ++   +L   G  GM   +  +++        L   TYNT++ +      
Sbjct: 411 MSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLEGMRSCGVELSRDTYNTLIAAYGRCGS 470

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
              A +++ +M + G  P   TYN +++  S    + +A ++VS M   GF P   +Y+ 
Sbjct: 471 RTNAFKMYNEMTSAGFTPCITTYNALLNVLSRQGDWSTAQSIVSKMRTKGFKPNEQSYSL 530

Query: 585 LIKILLDYGDFDEALNLLDLVSLEG--IPHDVLLYNTILKK-ACEKGRIDVIEFIIEQMH 641
           L++     G+      + + V   G   P  V+L   ++    C   R+D +E   +++ 
Sbjct: 531 LLQCYAKGGNVAGIAAIENEVYGSGAVFPSWVILRTLVIANFKCR--RLDGMETAFQEVK 588

Query: 642 QNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
                PD    + + S Y   G ++ A E    +    L  ++ T
Sbjct: 589 ARGYNPDLVIFNSMLSIYAKNGMYSKATEVFDSIKRSGLSPDLIT 633



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 95/207 (45%), Gaps = 5/207 (2%)

Query: 479 SMKNLLKALGAEGMIRELIQYFCDSKTPLGTP----TYNTVLHSLVEAQESHRAMEIFKQ 534
           +++ +++ALG EG    +     ++  P G+      Y TVLH+L  A    RA+E+F +
Sbjct: 140 ALEMVVRALGREGQHDAVCALLDETPLPPGSRLDVRAYTTVLHALSRAGRYERALELFAE 199

Query: 535 MKTCGIPPNAATYNIMIDCCS-IIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYG 593
           ++  G+ P   TYN+++D    + R +    AL+  M   G  P   T + +I      G
Sbjct: 200 LRRQGVAPTLVTYNVVLDVYGRMGRSWPRIVALLDEMRAAGVEPDGFTASTVIAACCRDG 259

Query: 594 DFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCH 653
             DEA+   + +   G    V+ YN +L+   + G       ++ +M QN  QPD  T +
Sbjct: 260 LVDEAVAFFEDLKARGHAPCVVTYNALLQVFGKAGNYTEALRVLGEMEQNGCQPDAVTYN 319

Query: 654 FVFSGYVNCGFHNSAMEALQVLSMRML 680
            +   Y   GF   A   L  ++ + L
Sbjct: 320 ELAGTYARAGFFEEAARCLDTMASKGL 346



 Score = 69.3 bits (168), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 108/515 (20%), Positives = 197/515 (38%), Gaps = 66/515 (12%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y  ++Q   K G   EA  ++  + E+ G  P    YN   G  A+      A  CLD M
Sbjct: 283 YNALLQVFGKAGNYTEALRVLGEM-EQNGCQPDAVTYNELAGTYARAGFFEEAARCLDTM 341

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDY-----------IKHYSLSIFSLRK- 232
            S+ +  N  TY  ++       N+  V E    +           +  Y+L +  L K 
Sbjct: 342 ASKGLLPNAFTYNTVMTA---YGNVGKVDEALALFDQMKKTGFVPNVNTYNLVLGMLGKK 398

Query: 233 --FVWSFTRLRDLKSAYETLQHMV---ALAMMGKL----YINRTSEGRLRSSRLDIPIPL 283
             F      L ++  +  T   +     LA+ GK     Y+ R  EG +RS  +++    
Sbjct: 399 SRFTVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLEG-MRSCGVELS--- 454

Query: 284 NALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRG 343
                    R +++ +I A GR  +   A ++  +M S G  P   TY+  +  +     
Sbjct: 455 ---------RDTYNTLIAAYGRCGSRTNAFKMYNEMTSAGFTPCITTYNALLNVLSRQGD 505

Query: 344 LRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLA 403
                 ++  M+    KP + + + L    +K   +    A+ +++       P    L 
Sbjct: 506 WSTAQSIVSKMRTKGFKPNEQSYSLLLQCYAKGGNVAGIAAIENEVYGSGAVFPSWVILR 565

Query: 404 A-------CDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQV 455
                   C  +D  E A   F +++ +   PD+  +  + S+       Y +  M+S+ 
Sbjct: 566 TLVIANFKCRRLDGMETA---FQEVKARGYNPDLVIFNSMLSI-------YAKNGMYSKA 615

Query: 456 ----DSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPT 511
               DS KR       +  N++   +       ++  AE ++ +L    C         +
Sbjct: 616 TEVFDSIKRSGLSPDLITYNSLMDMYAKCS---ESWEAEKILNQLK---CSQTMKPDVVS 669

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           YNTV++   +      A  +  +M   G+ P A TY+ ++   S +  F  A  ++  MV
Sbjct: 670 YNTVINGFCKQGLVKEAQRVLSEMVADGMAPCAVTYHTLVGGYSSLEMFSEAREVIGYMV 729

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVS 606
           + G  P  +TY  +++       F+EA   L  VS
Sbjct: 730 QHGLKPMELTYRRVVESYCRAKRFEEARGFLSEVS 764



 Score = 67.0 bits (162), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 112/573 (19%), Positives = 212/573 (36%), Gaps = 39/573 (6%)

Query: 120 LNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKL-HSMVHAN 178
           L+ + Y  ++ AL + G  E A  L   L  R G+ P L  YN  L    ++  S     
Sbjct: 172 LDVRAYTTVLHALSRAGRYERALELFAEL-RRQGVAPTLVTYNVVLDVYGRMGRSWPRIV 230

Query: 179 LCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDY-IKHYSLSIFSLRKFVWSF 237
             LD M +  V  +  T + ++        +      +ED   + ++  + +    +  F
Sbjct: 231 ALLDEMRAAGVEPDGFTASTVIAACCRDGLVDEAVAFFEDLKARGHAPCVVTYNALLQVF 290

Query: 238 TRLRDLKSAYETLQHM---------VALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPV 288
            +  +   A   L  M         V    +   Y  R       +  LD       LP 
Sbjct: 291 GKAGNYTEALRVLGEMEQNGCQPDAVTYNELAGTYA-RAGFFEEAARCLDTMASKGLLPN 349

Query: 289 MKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGM 348
                ++++ V+ A G       A  L  QM+  G  P+ +TY+  +  +         +
Sbjct: 350 A----FTYNTVMTAYGNVGKVDEALALFDQMKKTGFVPNVNTYNLVLGMLGKKSRFTVML 405

Query: 349 EVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT---NPKPFSAFLAAC 405
           E+L  M ++   P   T  T+   C K    D    +L+ +  C    +   ++  +AA 
Sbjct: 406 EMLGEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLEGMRSCGVELSRDTYNTLIAAY 465

Query: 406 DTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAI 464
                   A K++ +M      P I TY  L              N+ S+        +I
Sbjct: 466 GRCGSRTNAFKMYNEMTSAGFTPCITTYNALL-------------NVLSRQGDWSTAQSI 512

Query: 465 EMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQE 524
              M     + +  S   LL+     G +  +     +            +L +LV A  
Sbjct: 513 VSKMRTKGFKPNEQSYSLLLQCYAKGGNVAGIAAIENEVYGSGAVFPSWVILRTLVIANF 572

Query: 525 SHRAME----IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTM 580
             R ++     F+++K  G  P+   +N M+   +    +  A+ +   + R G  P  +
Sbjct: 573 KCRRLDGMETAFQEVKARGYNPDLVIFNSMLSIYAKNGMYSKATEVFDSIKRSGLSPDLI 632

Query: 581 TYTALIKILLDYGDFDEALNLLD-LVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQ 639
           TY +L+ +     +  EA  +L+ L   + +  DV+ YNT++   C++G +   + ++ +
Sbjct: 633 TYNSLMDMYAKCSESWEAEKILNQLKCSQTMKPDVVSYNTVINGFCKQGLVKEAQRVLSE 692

Query: 640 MHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEAL 672
           M  + + P   T H +  GY +    + A E +
Sbjct: 693 MVADGMAPCAVTYHTLVGGYSSLEMFSEAREVI 725


>gi|15221671|ref|NP_176495.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169919|sp|Q9CAN6.1|PPR97_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63070, mitochondrial; Flags: Precursor
 gi|12323265|gb|AAG51617.1|AC010795_21 unknown protein; 38394-36551 [Arabidopsis thaliana]
 gi|332195929|gb|AEE34050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 590

 Score = 92.4 bits (228), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 84/365 (23%), Positives = 153/365 (41%), Gaps = 21/365 (5%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A  L+ QM  +G QP + T+   +  +         + +++ M     +P   T   +  
Sbjct: 164 AVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVIN 223

Query: 372 ECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDK---PERAIKIFAKMRQK-LRP 427
              K  E DLA  LL+++ +         +    D + K    + A  +F KM  K ++P
Sbjct: 224 GLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKP 283

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL 487
           D+ TY  L S   N          + +   A R+ +   DM   NI    +    L+ A 
Sbjct: 284 DVFTYNPLISCLCN----------YGRWSDASRLLS---DMLEKNINPDLVFFNALIDAF 330

Query: 488 GAEGMIRELIQYFCD-SKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPN 543
             EG + E  + + +  K+    P    YNT++    + +     ME+F++M   G+  N
Sbjct: 331 VKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGN 390

Query: 544 AATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLD 603
             TY  +I      R   +A  +   MV DG +P  MTY  L+  L + G+ + AL + +
Sbjct: 391 TVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFE 450

Query: 604 LVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
            +    +  D++ Y T+++  C+ G+++    +   +    V+P+  T   + SG+   G
Sbjct: 451 YMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKG 510

Query: 664 FHNSA 668
               A
Sbjct: 511 LKEEA 515



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 93/424 (21%), Positives = 159/424 (37%), Gaps = 87/424 (20%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           FS ++ A  +     L   L  QMQ+LG+  + +TY  FI        L   + +L  M 
Sbjct: 78  FSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSIFINYFCRRSQLSLALAILGKMM 137

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT---NPKPFSAFLAACDTMDKPE 412
           +    P   T+ +L         +  A AL+DQ+       +   F+  +      +K  
Sbjct: 138 KLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKAS 197

Query: 413 RAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471
            A+ +  +M  K  +PD+ TY  + +       P    N+ ++++  K    IE D+   
Sbjct: 198 EAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGK----IEADVV-- 251

Query: 472 NIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEI 531
                                                   YNT++  L + +    A ++
Sbjct: 252 ---------------------------------------IYNTIIDGLCKYKHMDDAFDL 272

Query: 532 FKQMKTCGIPPNAATYNIMIDC-CSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590
           F +M+T GI P+  TYN +I C C+  R +  AS L+S M+     P  + + ALI   +
Sbjct: 273 FNKMETKGIKPDVFTYNPLISCLCNYGR-WSDASRLLSDMLEKNINPDLVFFNALIDAFV 331

Query: 591 DYGDFDEALNLLD-LVSLEGIPHDVLLYNTILKKACEKGRI------------------- 630
             G   EA  L D +V  +    DV+ YNT++K  C+  R+                   
Sbjct: 332 KEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNT 391

Query: 631 ----------------DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQV 674
                           D  + + +QM  + V PD  T + +  G  N G   +A+   + 
Sbjct: 392 VTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEY 451

Query: 675 LSMR 678
           +  R
Sbjct: 452 MQKR 455



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 101/512 (19%), Positives = 183/512 (35%), Gaps = 36/512 (7%)

Query: 155 YPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHE 214
           +P +  ++  L A AK++         + M +  +  N  TY+  +     +  LS    
Sbjct: 72  FPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSIFINYFCRRSQLSLALA 131

Query: 215 IWEDYIK-HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRT-SEGRL 272
           I    +K  Y  SI +L   +  F     +  A   +  MV +          T   G  
Sbjct: 132 ILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLF 191

Query: 273 RSSRLDIPIPLNALPVMKVLR---WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSH 329
           + ++    + L    V+K  +    ++  VI+   +     LA  L+ +M+   ++    
Sbjct: 192 QHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVV 251

Query: 330 TYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL-SVECSKALELDLAEALLDQ 388
            Y+  I  +   + + +  ++   M+   +KP   T   L S  C+     D +  L D 
Sbjct: 252 IYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDM 311

Query: 389 ISRCTNPKP--FSAFLAACDTMDKPERAIKIFAKMRQKLR--PDIRTYELLF-------- 436
           + +  NP    F+A + A     K   A K++ +M +     PD+  Y  L         
Sbjct: 312 LEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKR 371

Query: 437 --------------SLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKN 482
                          L GN        + F Q         +   M  + +    ++   
Sbjct: 372 VEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNI 431

Query: 483 LLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCG 539
           LL  L   G +     + +Y       L   TY T++ +L +A +     ++F  +   G
Sbjct: 432 LLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKG 491

Query: 540 IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEAL 599
           + PN  TY  M+         + A AL   M  DG  P + TY  LI+  L  GD   + 
Sbjct: 492 VKPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDGPLPNSGTYNTLIRARLRDGDEAASA 551

Query: 600 NLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
            L+  +   G   D   +  ++      GR+D
Sbjct: 552 ELIKEMRSCGFAGDASTFG-LVTNMLHDGRLD 582



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 74/463 (15%), Positives = 163/463 (35%), Gaps = 112/463 (24%)

Query: 93  ILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERY 152
           ++N   +  +P   +     ME+ +I  +   Y  ++  LCK  ++++A +L   + E  
Sbjct: 221 VINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKM-ETK 279

Query: 153 GIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAV 212
           GI P +  YN  +           A+  L  M  + +  + V +  L+   V +  L   
Sbjct: 280 GIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEA 339

Query: 213 HEIWEDYI--KHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEG 270
            +++++ +  KH    + +    +  F + + ++   E  + M    ++G          
Sbjct: 340 EKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTV------- 392

Query: 271 RLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHT 330
                                   +++ +IH   + ++   A+ +  QM S G+ P   T
Sbjct: 393 ------------------------TYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMT 428

Query: 331 YDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQIS 390
           Y+  +  + ++  +   + V + MQ+ ++K    T  T+     KA              
Sbjct: 429 YNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKA-------------- 474

Query: 391 RCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEG 449
                              K E    +F  +  K ++P++ TY  + S F       E  
Sbjct: 475 ------------------GKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEAD 516

Query: 450 NMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGT 509
            +F                         + MK                    D   P  +
Sbjct: 517 ALF-------------------------VEMKE-------------------DGPLP-NS 531

Query: 510 PTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID 552
            TYNT++ + +   +   + E+ K+M++CG   +A+T+ ++ +
Sbjct: 532 GTYNTLIRARLRDGDEAASAELIKEMRSCGFAGDASTFGLVTN 574


>gi|83744088|gb|ABC42330.1| PPR protein [Oryza sativa Indica Group]
          Length = 791

 Score = 92.4 bits (228), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 114/495 (23%), Positives = 208/495 (42%), Gaps = 28/495 (5%)

Query: 206 QKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYI- 264
           Q+ L  +H + +D        + S    +  F +  D   AY T   M+   ++  +   
Sbjct: 175 QEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTY 234

Query: 265 NRTSEGRLRSSRLDIPIP-LNALPVMKVLR--WSFSDVIHACGRTQNSGLAEQLMLQMQS 321
           N       ++  +D  +  LN +    V+    +++ ++H    +     A   + +M+S
Sbjct: 235 NSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRS 294

Query: 322 LGLQPSSHTYDGFIRAIVSDRGLRNG--MEVLKI---MQQNNLKPQDSTIATLSVECSKA 376
            G++P   TY     +++ D   +NG  ME  KI   M +  LKP+ +T  TL    +  
Sbjct: 295 DGVEPDVVTY-----SLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATK 349

Query: 377 LELDLAEALLDQISR-CTNPK--PFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTY 432
             L     LLD + R   +P    FS  + A     K ++A+ +F+KMRQ+ L P+  TY
Sbjct: 350 GALVEMHGLLDLMVRNGIHPDHYVFSILICAYANQGKVDQAMLVFSKMRQQGLNPNAVTY 409

Query: 433 ELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGM 492
             +  +        +    F Q+        I+  ++  NI ++  S+ + L        
Sbjct: 410 GAVIGILCKSGRVEDAMLYFEQM--------IDEGLSPGNIVYN--SLIHGLCTCNKWER 459

Query: 493 IRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID 552
             ELI    D    L T  +N+++ S  +      + ++F+ M   G+ PN  TYN +I+
Sbjct: 460 AEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLIN 519

Query: 553 CCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPH 612
              +      A  L+S MV  G  P T+TY+ LI         ++AL L   +   G+  
Sbjct: 520 GYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSP 579

Query: 613 DVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEAL 672
           D++ YN IL+   +  R    + +  ++ ++  Q + ST + +  G       + A++  
Sbjct: 580 DIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMF 639

Query: 673 QVLSMRMLCEEVSTL 687
           Q L +  L  E  T 
Sbjct: 640 QNLCLMDLKLEARTF 654



 Score = 58.9 bits (141), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 109/522 (20%), Positives = 207/522 (39%), Gaps = 54/522 (10%)

Query: 153 GIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELL----KLAVWQKN 208
           GI P +  YNS + A  K  +M  A   L+ M    V  + +TY  +L         ++ 
Sbjct: 226 GILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEA 285

Query: 209 LSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQH---MVALAMMGKLYIN 265
           +  + ++  D ++   ++   L  ++    R  + +  ++++        +   G L   
Sbjct: 286 IGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQG 345

Query: 266 RTSEGRLRS--SRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLML---QMQ 320
             ++G L      LD+ +     P      + FS +I A     N G  +Q ML   +M+
Sbjct: 346 YATKGALVEMHGLLDLMVRNGIHPD----HYVFSILICA---YANQGKVDQAMLVFSKMR 398

Query: 321 SLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELD 380
             GL P++ TY   I  +     + + M   + M    L P +    +L        + +
Sbjct: 399 QQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWE 458

Query: 381 LAEAL-LDQISR--CTNPKPFSAFLAACDTMDKPERAI---KIFAKM-RQKLRPDIRTYE 433
            AE L L+ + R  C N   F++ +   D+  K  R I   K+F  M R  ++P++ TY 
Sbjct: 459 RAEELILEMLDRGICLNTIFFNSII---DSHCKEGRVIESEKLFELMVRIGVKPNVITYN 515

Query: 434 LLFS--------------LFGNVNAPYEEG--------NMFSQVDSAKRINAIEMDMARN 471
            L +              L G V+   +          N + ++   +    +  +M  +
Sbjct: 516 TLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESS 575

Query: 472 NIQHSHISMKNLLKAL---GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRA 528
            +    I+   +L+ L         +EL     +S T +   TYN +LH L + + +  A
Sbjct: 576 GVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDA 635

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
           +++F+ +    +   A T+NIMID    +     A  L      +G  P   TY  + + 
Sbjct: 636 LQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAEN 695

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           ++  G  +E   L   +   G   D  + N I+++  ++G I
Sbjct: 696 IIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEI 737



 Score = 41.2 bits (95), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 72/167 (43%), Gaps = 9/167 (5%)

Query: 528 AMEIFKQMKTCG---IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
           A+  + +M   G   + P+  TY I+I CC          A +  +++ GF    + +T 
Sbjct: 68  AVSRYNRMARAGADEVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTP 127

Query: 585 LIKILLDYGDFDEALNLL--DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642
           L+K L       +A++++   +  L  IP +V  YN +LK  C++ R      ++  M  
Sbjct: 128 LLKGLCADKRTSDAMDIVLRRMTELGCIP-NVFSYNILLKGLCDENRSQEALELLHMMAD 186

Query: 643 NK---VQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           ++     PD  +   V +G+   G  + A      +  R +  +V T
Sbjct: 187 DRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVT 233


>gi|168014206|ref|XP_001759643.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162689182|gb|EDQ75555.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1043

 Score = 92.4 bits (228), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 111/552 (20%), Positives = 217/552 (39%), Gaps = 56/552 (10%)

Query: 111  RMMEEKEIG---LNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGA 167
            R +E   +G   L    Y  +M A    G+++EA  L+  + +++   P +  Y + +  
Sbjct: 514  RTVEYPSLGFKSLGEITYNTLMSAFIHNGHVDEAVKLLEVM-KKHECIPTVVTYTTLVDG 572

Query: 168  CAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSI 227
              K   +  A   L  M+ +    + VTY+ L+     +        ++++ ++   ++ 
Sbjct: 573  LGKAGRLDEAVSLLREMEKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEMVRKGCVAD 632

Query: 228  FSLRKFVWS-FTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNAL 286
             S    V +   +  D+  A +    M               EG                
Sbjct: 633  VSTYSLVINCLCKSDDVDQALDVFGRM-------------KEEG---------------- 663

Query: 287  PVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRN 346
              M+ L  ++  ++ +  + +    A Q+  ++Q   L P +  Y+  +  +V    +  
Sbjct: 664  --MEPLLGNYKTLLSSLVKDEKIDFALQIFNELQESSLVPDTFVYNIMVNGLVKSNRVDE 721

Query: 347  GMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACD 406
              +++  M+  N+ P   T  +L     K+  L+ A  +  +++   +     A+ +  D
Sbjct: 722  ACKLVDSMKNQNILPDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEGHEPDVVAYTSLMD 781

Query: 407  TMDKPER---AIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRIN 462
             + K  +   A+ IF  M +++  PD+ TY  L    G      EE   F +       N
Sbjct: 782  VLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSLIDSLGK-EGRVEEAYYFFE-------N 833

Query: 463  AIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCD---SKTPLGTPTYNTVLHSL 519
            +I      N   +S     +L+ + G +GM+   ++ F +    + P    TYN +L  L
Sbjct: 834  SISKGCTPNVGVYS-----SLIDSFGKKGMVDRALELFEEMQRRQCPPNIVTYNNLLSGL 888

Query: 520  VEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQT 579
             +A   + A ++ ++M+  G  P+  TYNI+ID    +     A +    M   G  P  
Sbjct: 889  AKAGRLNVAEKLLEEMEKVGCVPDLVTYNILIDGVGKMGMVDEAESYFKRMKEKGIVPDV 948

Query: 580  MTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQ 639
            +T+T+LI+ L       EA  L D +  EG    V+ YN ++      G++     I  +
Sbjct: 949  ITFTSLIESLGKVDKLLEACELFDSMEEEGYNPSVVTYNVLIDILGRAGKVHEAAMIFHE 1008

Query: 640  MHQNKVQPDPST 651
            M      PD  T
Sbjct: 1009 MKVKGCMPDGIT 1020



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 85/389 (21%), Positives = 160/389 (41%), Gaps = 35/389 (8%)

Query: 273 RSSRLDIPIPLNALPVMKVLR-------WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQ 325
           RS RLD      A P+ ++++        +F+ +I A  ++ N   A +    M++L   
Sbjct: 299 RSGRLDPA----AEPIQEMIKSGIDPGVHTFTVLIDALVKSGNIDEACKFFNGMKNLRCS 354

Query: 326 PSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEAL 385
           P+  TY   +  +     L    EV   M++NN  P      TL     KA E D+A  L
Sbjct: 355 PNVVTYTTLVNGLAKAGRLEEACEVFVEMKENNCSPDAIAYNTLIDGLGKAGEADMACGL 414

Query: 386 LDQISR---CTNPKPFSAFLAACDTMDKPERAIKIFAKMR-QKLRPDIRTYELLFSLFGN 441
             ++       N + ++  ++      +   A ++F  ++ Q   PD+ TY  L  + G 
Sbjct: 415 FKEMKDRGLVPNLRTYNIMISVLGKAGRQPEAWQLFHDLKEQGAVPDVFTYNTLIDVLGK 474

Query: 442 VNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIR---ELIQ 498
                       Q+D   ++ AI  +M    ++     + +     G EG I      ++
Sbjct: 475 ----------GGQMD---KVLAIIKEM----VEKGGECIISRDSNAGHEGTIEGADRTVE 517

Query: 499 YFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIR 558
           Y       LG  TYNT++ + +       A+++ + MK     P   TY  ++D      
Sbjct: 518 YPSLGFKSLGEITYNTLMSAFIHNGHVDEAVKLLEVMKKHECIPTVVTYTTLVDGLGKAG 577

Query: 559 CFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYN 618
               A +L+  M + G  P  +TY++L+         +E+L+L D +  +G   DV  Y+
Sbjct: 578 RLDEAVSLLREMEKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEMVRKGCVADVSTYS 637

Query: 619 TILKKACEKGRIDVIEFIIEQMHQNKVQP 647
            ++   C+   +D    +  +M +  ++P
Sbjct: 638 LVINCLCKSDDVDQALDVFGRMKEEGMEP 666



 Score = 79.7 bits (195), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 125/647 (19%), Positives = 249/647 (38%), Gaps = 58/647 (8%)

Query: 121 NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLC 180
           N   Y  ++  L K G LEEA  +   + E     P    YN+ +    K      A   
Sbjct: 356 NVVTYTTLVNGLAKAGRLEEACEVFVEMKEN-NCSPDAIAYNTLIDGLGKAGEADMACGL 414

Query: 181 LDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSL-SIFSLRKFVWSFTR 239
              M  R +  N  TY  ++ +           +++ D  +  ++  +F+    +    +
Sbjct: 415 FKEMKDRGLVPNLRTYNIMISVLGKAGRQPEAWQLFHDLKEQGAVPDVFTYNTLIDVLGK 474

Query: 240 LRDLKSAYETLQHMVALAMMGKLYINRTS----EGRLRSSRLDIPIPLNALPVMKVLRWS 295
              +      ++ MV     G+  I+R S    EG +  +   +  P  +L    +   +
Sbjct: 475 GGQMDKVLAIIKEMVEKG--GECIISRDSNAGHEGTIEGADRTVEYP--SLGFKSLGEIT 530

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           ++ ++ A     +   A +L+  M+     P+  TY   +  +     L   + +L+ M+
Sbjct: 531 YNTLMSAFIHNGHVDEAVKLLEVMKKHECIPTVVTYTTLVDGLGKAGRLDEAVSLLREME 590

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKPE 412
           +   +P   T ++L     K  + + + +L D++ R     +   +S  +      D  +
Sbjct: 591 KQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEMVRKGCVADVSTYSLVINCLCKSDDVD 650

Query: 413 RAIKIFAKMRQK-LRPDIRTYELLFS-------------LFGNVNAPYEEGNMF------ 452
           +A+ +F +M+++ + P +  Y+ L S             +F  +       + F      
Sbjct: 651 QALDVFGRMKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFNELQESSLVPDTFVYNIMV 710

Query: 453 ------SQVDSAKRINAIEMDMARN-NIQHSHISMKNLLKALGAEGMIRELIQYFCDSKT 505
                 ++VD A ++    +D  +N NI     +  +LL  LG  G + E    F     
Sbjct: 711 NGLVKSNRVDEACKL----VDSMKNQNILPDLFTYTSLLDGLGKSGRLEEAFNMFTKMTE 766

Query: 506 PLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKS 562
               P    Y +++  L +  +   A+ IF+ M      P+  TY+ +ID        + 
Sbjct: 767 EGHEPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSLIDSLGKEGRVEE 826

Query: 563 ASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILK 622
           A       +  G  P    Y++LI      G  D AL L + +     P +++ YN +L 
Sbjct: 827 AYYFFENSISKGCTPNVGVYSSLIDSFGKKGMVDRALELFEEMQRRQCPPNIVTYNNLLS 886

Query: 623 KACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCE 682
              + GR++V E ++E+M +    PD  T + +  G    G  + A    + +  + +  
Sbjct: 887 GLAKAGRLNVAEKLLEEMEKVGCVPDLVTYNILIDGVGKMGMVDEAESYFKRMKEKGIVP 946

Query: 683 EVSTLEEKRSDFEDLILAEDSEAESRILQFCE--DSNENLAFTAALL 727
           +V T       F  LI  E      ++L+ CE  DS E   +  +++
Sbjct: 947 DVIT-------FTSLI--ESLGKVDKLLEACELFDSMEEEGYNPSVV 984



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 84/394 (21%), Positives = 147/394 (37%), Gaps = 51/394 (12%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
            + ++   G T N   A ++  QM+S G  PS++ Y+  +  +V      + + V   + 
Sbjct: 220 LTSLLRTFGSTNNVSGALEIFNQMKSFGCNPSTNMYNFVLELLVKGGFYHSAVIVFGKLG 279

Query: 356 QNNLKPQDSTIATLSVECSKALELD-LAEALLDQISRCTNPK--PFSAFLAACDTMDKPE 412
           Q  ++P   T        +++  LD  AE + + I    +P    F+  + A       +
Sbjct: 280 QFRIQPDAQTFRIFVHSFNRSGRLDPAAEPIQEMIKSGIDPGVHTFTVLIDALVKSGNID 339

Query: 413 RAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471
            A K F  M+  +  P++ TY  L +         E   +F             ++M  N
Sbjct: 340 EACKFFNGMKNLRCSPNVVTYTTLVNGLAKAGRLEEACEVF-------------VEMKEN 386

Query: 472 NIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRA 528
           N     I+   L+  LG  G        F + K     P   TYN ++  L +A     A
Sbjct: 387 NCSPDAIAYNTLIDGLGKAGEADMACGLFKEMKDRGLVPNLRTYNIMISVLGKAGRQPEA 446

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGF------------- 575
            ++F  +K  G  P+  TYN +ID            A++  MV  G              
Sbjct: 447 WQLFHDLKEQGAVPDVFTYNTLIDVLGKGGQMDKVLAIIKEMVEKGGECIISRDSNAGHE 506

Query: 576 -----------YPQ-------TMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLY 617
                      YP         +TY  L+   +  G  DEA+ LL+++        V+ Y
Sbjct: 507 GTIEGADRTVEYPSLGFKSLGEITYNTLMSAFIHNGHVDEAVKLLEVMKKHECIPTVVTY 566

Query: 618 NTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
            T++    + GR+D    ++ +M +   +P   T
Sbjct: 567 TTLVDGLGKAGRLDEAVSLLREMEKQGCEPSVVT 600



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 95/485 (19%), Positives = 199/485 (41%), Gaps = 42/485 (8%)

Query: 125  YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
            Y  ++  L K G L+EA +L+  + E+ G  P +  Y+S + +  K      +    D M
Sbjct: 566  YTTLVDGLGKAGRLDEAVSLLREM-EKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEM 624

Query: 185  DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLS--IFSLRKFVWSFTRLRD 242
              +    +  TY+ ++       ++    +++   +K   +   + + +  + S  +   
Sbjct: 625  VRKGCVADVSTYSLVINCLCKSDDVDQALDVF-GRMKEEGMEPLLGNYKTLLSSLVKDEK 683

Query: 243  LKSAYETLQHMVALAMMGKLYI-NRTSEGRLRSSRLDIPIPL-------NALPVMKVLRW 294
            +  A +    +   +++   ++ N    G ++S+R+D    L       N LP +    +
Sbjct: 684  IDFALQIFNELQESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQNILPDL----F 739

Query: 295  SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
            +++ ++   G++     A  +  +M   G +P    Y   +  +     L + + + + M
Sbjct: 740  TYTSLLDGLGKSGRLEEAFNMFTKMTEEGHEPDVVAYTSLMDVLGKGGKLSHALIIFRAM 799

Query: 355  QQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISR-CT-NPKPFSAFLAACDTMDKP 411
             +    P   T ++L     K   ++ A    +  IS+ CT N   +S+ + +       
Sbjct: 800  AKKRCVPDVVTYSSLIDSLGKEGRVEEAYYFFENSISKGCTPNVGVYSSLIDSFGKKGMV 859

Query: 412  ERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM---D 467
            +RA+++F +M R++  P+I TY                 N+ S +  A R+N  E    +
Sbjct: 860  DRALELFEEMQRRQCPPNIVTYN----------------NLLSGLAKAGRLNVAEKLLEE 903

Query: 468  MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQE 524
            M +       ++   L+  +G  GM+ E   YF   K     P   T+ +++ SL +  +
Sbjct: 904  MEKVGCVPDLVTYNILIDGVGKMGMVDEAESYFKRMKEKGIVPDVITFTSLIESLGKVDK 963

Query: 525  SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
               A E+F  M+  G  P+  TYN++ID          A+ +   M   G  P  +T   
Sbjct: 964  LLEACELFDSMEEEGYNPSVVTYNVLIDILGRAGKVHEAAMIFHEMKVKGCMPDGITIGI 1023

Query: 585  LIKIL 589
            + +IL
Sbjct: 1024 MKRIL 1028



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/210 (22%), Positives = 91/210 (43%), Gaps = 3/210 (1%)

Query: 480 MKNLLKALGAEGMIRELIQYFCDSKTPLGTPT---YNTVLHSLVEAQESHRAMEIFKQMK 536
           + +LL+  G+   +   ++ F   K+    P+   YN VL  LV+    H A+ +F ++ 
Sbjct: 220 LTSLLRTFGSTNNVSGALEIFNQMKSFGCNPSTNMYNFVLELLVKGGFYHSAVIVFGKLG 279

Query: 537 TCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFD 596
              I P+A T+ I +   +       A+  +  M++ G  P   T+T LI  L+  G+ D
Sbjct: 280 QFRIQPDAQTFRIFVHSFNRSGRLDPAAEPIQEMIKSGIDPGVHTFTVLIDALVKSGNID 339

Query: 597 EALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVF 656
           EA    + +       +V+ Y T++    + GR++    +  +M +N   PD    + + 
Sbjct: 340 EACKFFNGMKNLRCSPNVVTYTTLVNGLAKAGRLEEACEVFVEMKENNCSPDAIAYNTLI 399

Query: 657 SGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
            G    G  + A    + +  R L   + T
Sbjct: 400 DGLGKAGEADMACGLFKEMKDRGLVPNLRT 429


>gi|357123295|ref|XP_003563347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Brachypodium distachyon]
          Length = 800

 Score = 92.4 bits (228), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 62/260 (23%), Positives = 119/260 (45%), Gaps = 16/260 (6%)

Query: 396 KPFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQ 454
           + ++  L A     + ERA+++FA++ R+ + P    Y ++  ++G +   + +      
Sbjct: 188 RAYTTVLHALSHEGRYERALELFAELKREGVAPTHVMYNVMLDVYGRMGRSWPQ------ 241

Query: 455 VDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---T 511
                 I A+  +M    ++    +   ++ A G +G++ E + +F D K+    P   T
Sbjct: 242 ------IVAMLEEMRAAGVEPDGFTASTVIAACGRDGLVDEAVAFFEDLKSRGHVPCVVT 295

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           YN +L    +A     A+ + K+M+  G  P+A TYN +    +    ++ A+  +  MV
Sbjct: 296 YNALLQVFGKAGNYMEALRVLKEMEESGCKPDAVTYNELAGSYARAGFYEEAAKCLDTMV 355

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
             G  P   TY  ++    + G  DEAL L D +   G    V  YN IL    +K R +
Sbjct: 356 SKGILPNAFTYNTIMTAYGNAGKVDEALALFDWMKKNGFIPYVNTYNLILGMLGKKSRFN 415

Query: 632 VIEFIIEQMHQNKVQPDPST 651
           V+  ++ +M ++   P+  T
Sbjct: 416 VMLEMLGEMSRSGCTPNRVT 435



 Score = 83.2 bits (204), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 85/390 (21%), Positives = 161/390 (41%), Gaps = 32/390 (8%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           ++ S VI ACGR      A      ++S G  P   TY+  ++           + VLK 
Sbjct: 259 FTASTVIAACGRDGLVDEAVAFFEDLKSRGHVPCVVTYNALLQVFGKAGNYMEALRVLKE 318

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPKPFS--AFLAACDTMDK 410
           M+++  KP   T   L+   ++A   + A   LD  +S+   P  F+    + A     K
Sbjct: 319 MEESGCKPDAVTYNELAGSYARAGFYEEAAKCLDTMVSKGILPNAFTYNTIMTAYGNAGK 378

Query: 411 PERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINA-IEM-- 466
            + A+ +F  M++    P + TY L+  + G                   R N  +EM  
Sbjct: 379 VDEALALFDWMKKNGFIPYVNTYNLILGMLGK----------------KSRFNVMLEMLG 422

Query: 467 DMARNNIQHSHISMKNLLKALGAEGM---IRELIQYFCDSKTPLGTPTYNTVLHSLVEAQ 523
           +M+R+    + ++   +L   G  GM   +  +++        L   T+NT++ +     
Sbjct: 423 EMSRSGCTPNRVTWNTMLAVCGKRGMEGYVTRVLERMKSCGVELCRDTFNTLISAYGRCG 482

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
               A +++ +M   G  P   TYN ++   S    + +A ++++ M  +GF P  M+Y+
Sbjct: 483 SRANAFKMYDEMTAAGFTPCLTTYNALLSVLSRQGDWTAAQSIINKMKNEGFKPNDMSYS 542

Query: 584 ALIKILLDYGDFDEALNLLDLVSLEG--IPHDVLLYNTILKK-ACEKGRIDVIEFIIEQM 640
            L++     G+    +  ++    EG   P  V+L   ++    C   R++ IE   +++
Sbjct: 543 LLLQCHAKGGN-AAGIEAIEKEVYEGTVFPSWVILRTLVISNFKCR--RLEGIERAFQEV 599

Query: 641 HQNKVQPDPSTCHFVFSGYVNCGFHNSAME 670
                +PD    + + S Y   G +  A E
Sbjct: 600 MARGHKPDLVIFNSMLSMYAKNGMYRKAGE 629



 Score = 72.8 bits (177), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 112/540 (20%), Positives = 201/540 (37%), Gaps = 103/540 (19%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y  ++Q   K G   EA  ++  + E  G  P    YN   G+ A+      A  CLD M
Sbjct: 296 YNALLQVFGKAGNYMEALRVLKEM-EESGCKPDAVTYNELAGSYARAGFYEEAAKCLDTM 354

Query: 185 DSRMVGKNEVTYT-------------ELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLR 231
            S+ +  N  TY              E L L  W K    +      Y+  Y+L +  L 
Sbjct: 355 VSKGILPNAFTYNTIMTAYGNAGKVDEALALFDWMKKNGFI-----PYVNTYNLILGMLG 409

Query: 232 K---FVWSFTRLRDLKSAYETLQHMV---ALAMMGKL----YINRTSEGRLRSSRLDIPI 281
           K   F      L ++  +  T   +     LA+ GK     Y+ R  E R++S  +++  
Sbjct: 410 KKSRFNVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKRGMEGYVTRVLE-RMKSCGVEL-- 466

Query: 282 PLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSD 341
                      R +F+ +I A GR  +   A ++  +M + G  P   TY+  +  +   
Sbjct: 467 ----------CRDTFNTLISAYGRCGSRANAFKMYDEMTAAGFTPCLTTYNALLSVLSRQ 516

Query: 342 RGLRNGMEVLKIMQQNNLKPQDSTIATLSVEC-SKALELDLAEALLDQISRCTNPKPFSA 400
                   ++  M+    KP D + + L ++C +K       EA+  ++   T    F +
Sbjct: 517 GDWTAAQSIINKMKNEGFKPNDMSYSLL-LQCHAKGGNAAGIEAIEKEVYEGT---VFPS 572

Query: 401 FLA---------ACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNM 451
           ++           C  ++  ERA +    M +  +PD+  +  + S++       + G M
Sbjct: 573 WVILRTLVISNFKCRRLEGIERAFQ--EVMARGHKPDLVIFNSMLSMYAKNGMYRKAGEM 630

Query: 452 FSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPT 511
           F  +                                   G+  +LI             T
Sbjct: 631 FDSIKQG--------------------------------GLSPDLI-------------T 645

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           YN+++    ++ ES  A +I K++KT  + P+  +YN +++        K A  ++S M+
Sbjct: 646 YNSMMDMYAKSNESWEAEKILKRLKTSQLKPDVVSYNTVMNGFCKQGLIKEAQRILSEMI 705

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
            DG  P  +TY  L+        F EA  ++  +    +    L Y  ++   C+  R D
Sbjct: 706 ADGVRPCVVTYHTLVGGYASREMFSEAREVVSYMIQRNLSPMELTYRRVVDSYCKAKRFD 765



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 80/176 (45%), Gaps = 6/176 (3%)

Query: 506 PLGTP-----TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCS-IIRC 559
           P G+P      Y TVLH+L       RA+E+F ++K  G+ P    YN+M+D    + R 
Sbjct: 179 PPGSPGLDVRAYTTVLHALSHEGRYERALELFAELKREGVAPTHVMYNVMLDVYGRMGRS 238

Query: 560 FKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNT 619
           +    A++  M   G  P   T + +I      G  DEA+   + +   G    V+ YN 
Sbjct: 239 WPQIVAMLEEMRAAGVEPDGFTASTVIAACGRDGLVDEAVAFFEDLKSRGHVPCVVTYNA 298

Query: 620 ILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
           +L+   + G       ++++M ++  +PD  T + +   Y   GF+  A + L  +
Sbjct: 299 LLQVFGKAGNYMEALRVLKEMEESGCKPDAVTYNELAGSYARAGFYEEAAKCLDTM 354



 Score = 65.9 bits (159), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 85/401 (21%), Positives = 165/401 (41%), Gaps = 34/401 (8%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGM-EVLK 352
           ++++ ++ A G       A  L   M+  G  P  +TY+  I  ++  +   N M E+L 
Sbjct: 364 FTYNTIMTAYGNAGKVDEALALFDWMKKNGFIPYVNTYN-LILGMLGKKSRFNVMLEMLG 422

Query: 353 IMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNP---KPFSAFLAACDTMD 409
            M ++   P   T  T+   C K         +L+++  C        F+  ++A     
Sbjct: 423 EMSRSGCTPNRVTWNTMLAVCGKRGMEGYVTRVLERMKSCGVELCRDTFNTLISAYGRCG 482

Query: 410 KPERAIKIFAKMRQK-LRPDIRTYELLFSLF---GNVNAPYEEGNMFSQVDSAKRINAIE 465
               A K++ +M      P + TY  L S+    G+  A        S ++  K      
Sbjct: 483 SRANAFKMYDEMTAAGFTPCLTTYNALLSVLSRQGDWTAAQ------SIINKMKNEGFKP 536

Query: 466 MDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGT--PTYNTVLHSLVEAQ 523
            DM+ + +   H    N   A G E + +E+ +         GT  P++  +L +LV + 
Sbjct: 537 NDMSYSLLLQCHAKGGN---AAGIEAIEKEVYE---------GTVFPSW-VILRTLVISN 583

Query: 524 ESHRAME----IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQT 579
              R +E     F+++   G  P+   +N M+   +    ++ A  +   + + G  P  
Sbjct: 584 FKCRRLEGIERAFQEVMARGHKPDLVIFNSMLSMYAKNGMYRKAGEMFDSIKQGGLSPDL 643

Query: 580 MTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQ 639
           +TY +++ +     +  EA  +L  +    +  DV+ YNT++   C++G I   + I+ +
Sbjct: 644 ITYNSMMDMYAKSNESWEAEKILKRLKTSQLKPDVVSYNTVMNGFCKQGLIKEAQRILSE 703

Query: 640 MHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRML 680
           M  + V+P   T H +  GY +    + A E +  +  R L
Sbjct: 704 MIADGVRPCVVTYHTLVGGYASREMFSEAREVVSYMIQRNL 744


>gi|356518209|ref|XP_003527773.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Glycine max]
          Length = 1113

 Score = 92.4 bits (228), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 116/538 (21%), Positives = 218/538 (40%), Gaps = 83/538 (15%)

Query: 181 LDLMDSRMVGKNEVTYTELLK-LAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTR 239
            DLM  +++ +N  TY  + K L++      A   + +     + L+ +S    ++   +
Sbjct: 145 FDLMQKQVINRNPNTYLTIFKALSIKGGIRQAPFALGKMRQAGFVLNAYSYNGLIYFLLQ 204

Query: 240 LRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDV 299
               K A +  + M+             SEG                P MK    ++S +
Sbjct: 205 PGFCKEALKVYKRMI-------------SEG--------------LKPSMK----TYSAL 233

Query: 300 IHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNL 359
           + A GR +++G    L+ +M++LGL+P+ +TY   IR +     + +   +LK M+    
Sbjct: 234 MVALGRRRDTGTIMDLLEEMETLGLRPNIYTYTICIRVLGRAGRIDDAYGILKTMEDEGC 293

Query: 360 KPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDKPERAI 415
            P   T   L      A +LD A+ L  ++ R ++ KP    +   ++        E   
Sbjct: 294 GPDVVTYTVLIDALCAAGKLDKAKELYTKM-RASSHKPDLVTYITLMSKFGNYGDLETVK 352

Query: 416 KIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVD--SAKRINAIEMDM-ARN 471
           + +++M      PD+ TY +L      V A  + G +    D     R+  I  ++   N
Sbjct: 353 RFWSEMEADGYAPDVVTYTIL------VEALCKSGKVDQAFDMLDVMRVRGIVPNLHTYN 406

Query: 472 NIQHSHISMKNLLKAL------GAEGMIRELIQY--FCDSKTPLGTP------------- 510
            +    ++++ L +AL       + G+      Y  F D    LG P             
Sbjct: 407 TLISGLLNLRRLDEALELFNNMESLGVAPTAYSYVLFIDYYGKLGDPEKALDTFEKMKKR 466

Query: 511 -------TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSA 563
                    N  L+SL E      A +IF  +  CG+ P++ TYN+M+ C S       A
Sbjct: 467 GIMPSIAACNASLYSLAEMGRIREAKDIFNDIHNCGLSPDSVTYNMMMKCYSKAGQIDKA 526

Query: 564 SALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKK 623
           + L++ M+ +G  P  +   +LI  L   G  DEA  +   +    +   V+ YN ++  
Sbjct: 527 TKLLTEMLSEGCEPDIIVVNSLIDTLYKAGRVDEAWQMFGRLKDLKLAPTVVTYNILITG 586

Query: 624 ACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLC 681
             ++G++     +   M ++   P+  T    F+  ++C   N A++    L+++M C
Sbjct: 587 LGKEGKLLKALDLFGSMKESGCPPNTVT----FNALLDCLCKNDAVD----LALKMFC 636



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 143/694 (20%), Positives = 280/694 (40%), Gaps = 95/694 (13%)

Query: 54  ATQMQIVDALCR-GERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRM 112
            T   ++DALC  G+  +A  L   +  + H      +  +++      D   V   W  
Sbjct: 298 VTYTVLIDALCAAGKLDKAKELYTKMRASSHKPDLVTYITLMSKFGNYGDLETVKRFWSE 357

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
           ME      +   Y ++++ALCK G +++A +++  +  R GI P L  YN+ +     L 
Sbjct: 358 MEADGYAPDVVTYTILVEALCKSGKVDQAFDMLDVMRVR-GIVPNLHTYNTLISGLLNLR 416

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELL----KLAVWQKNLSAVHEIWE----DYIKHYS 224
            +  A    + M+S  V     +Y   +    KL   +K L    ++ +      I   +
Sbjct: 417 RLDEALELFNNMESLGVAPTAYSYVLFIDYYGKLGDPEKALDTFEKMKKRGIMPSIAACN 476

Query: 225 LSIFSLRKFVWSFTRLRDLKSAYETLQHM------VALAMMGKLYINRTSEGRL-RSSRL 277
            S++SL +      R+R+ K  +  + +       V   MM K Y   +  G++ ++++L
Sbjct: 477 ASLYSLAE----MGRIREAKDIFNDIHNCGLSPDSVTYNMMMKCY---SKAGQIDKATKL 529

Query: 278 DIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRA 337
              +         ++  S  D ++  GR      A Q+  +++ L L P+  TY+  I  
Sbjct: 530 LTEMLSEGCEPDIIVVNSLIDTLYKAGRVDE---AWQMFGRLKDLKLAPTVVTYNILITG 586

Query: 338 IVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP 397
           +  +  L   +++   M+++   P   T   L     K   +DLA  +  +++   N  P
Sbjct: 587 LGKEGKLLKALDLFGSMKESGCPPNTVTFNALLDCLCKNDAVDLALKMFCRMT-IMNCSP 645

Query: 398 ----FSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFS 453
               ++  +       +   A   + +M++ L PD  T   L++L   V           
Sbjct: 646 DVLTYNTIIYGLIKEGRAGYAFWFYHQMKKFLSPDHVT---LYTLLPGV----------- 691

Query: 454 QVDSAKRINAIEMDMA---RNNIQHSHISMKNLLKALGAEGMIRE--------------- 495
            V   +  +AI++ M    ++ +Q S+     L++ +  E  I E               
Sbjct: 692 -VKDGRVEDAIKIVMEFVHQSGLQTSNQVWGELMECILIEAEIEEAISFAEGLVCNSICQ 750

Query: 496 -------LIQYFCDSKTP-------------LGT-PT---YNTVLHSLVEAQESHRAMEI 531
                  LI+  C  K               LGT PT   YN ++  L+    +  A+++
Sbjct: 751 DDNLILPLIRVLCKQKKALDAKKLFDKFTKSLGTHPTPESYNCLMDGLLGCNITEAALKL 810

Query: 532 FKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLD 591
           F +MK  G  PN  TYN+++D     +       L + M+  G  P  +T+  +I  L+ 
Sbjct: 811 FVEMKNAGCCPNIFTYNLLLDAHGKSKRIDELFELYNEMLCRGCKPNIITHNIIISALVK 870

Query: 592 YGDFDEALNL-LDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650
               ++AL+L  +++S +  P     Y  ++    + GR +    I E+M   + +P+ +
Sbjct: 871 SNSINKALDLYYEIISGDFSPTPC-TYGPLIGGLLKAGRSEEAMKIFEEMPDYQCKPNCA 929

Query: 651 TCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEV 684
             + + +G+   G  N A +  +    RM+ E +
Sbjct: 930 IYNILINGFGKAGNVNIACDLFK----RMIKEGI 959



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 85/365 (23%), Positives = 160/365 (43%), Gaps = 22/365 (6%)

Query: 323  GLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL-SVECSKALELDL 381
            GLQ S+  +   +  I+ +  +   +   + +  N++   D+ I  L  V C +   LD 
Sbjct: 712  GLQTSNQVWGELMECILIEAEIEEAISFAEGLVCNSICQDDNLILPLIRVLCKQKKALD- 770

Query: 382  AEALLDQISRC--TNPKP--FSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLF 436
            A+ L D+ ++   T+P P  ++  +      +  E A+K+F +M+     P+I TY LL 
Sbjct: 771  AKKLFDKFTKSLGTHPTPESYNCLMDGLLGCNITEAALKLFVEMKNAGCCPNIFTYNLLL 830

Query: 437  SLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIREL 496
               G      E   ++         N +     + NI   +I +  L+K+      +   
Sbjct: 831  DAHGKSKRIDELFELY---------NEMLCRGCKPNIITHNIIISALVKSNSINKALDLY 881

Query: 497  IQYFCDSKTPLGTP-TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCS 555
             +      +P  TP TY  ++  L++A  S  AM+IF++M      PN A YNI+I+   
Sbjct: 882  YEIISGDFSP--TPCTYGPLIGGLLKAGRSEEAMKIFEEMPDYQCKPNCAIYNILINGFG 939

Query: 556  IIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVL 615
                   A  L   M+++G  P   +YT L++ L   G  D+A++  + + L G+  D +
Sbjct: 940  KAGNVNIACDLFKRMIKEGIRPDLKSYTILVECLFMTGRVDDAVHYFEELKLTGLDPDTV 999

Query: 616  LYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSA---MEAL 672
             YN ++    +  R++    +  +M    + P+  T + +   + N G  + A    E L
Sbjct: 1000 SYNLMINGLGKSRRLEEALSLFSEMKNRGISPELYTYNALILHFGNAGMVDQAGKMFEEL 1059

Query: 673  QVLSM 677
            Q + +
Sbjct: 1060 QFMGL 1064



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 114/603 (18%), Positives = 234/603 (38%), Gaps = 29/603 (4%)

Query: 98  ARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPI 157
            R  D   +M+    ME   +  N   Y + ++ L + G +++A  ++  + E  G  P 
Sbjct: 238 GRRRDTGTIMDLLEEMETLGLRPNIYTYTICIRVLGRAGRIDDAYGILKTM-EDEGCGPD 296

Query: 158 LPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWE 217
           +  Y   + A      +  A      M +     + VTY  L+       +L  V   W 
Sbjct: 297 VVTYTVLIDALCAAGKLDKAKELYTKMRASSHKPDLVTYITLMSKFGNYGDLETVKRFWS 356

Query: 218 DY-IKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYI-NRTSEGRLRSS 275
           +     Y+  + +    V +  +   +  A++ L  M    ++  L+  N    G L   
Sbjct: 357 EMEADGYAPDVVTYTILVEALCKSGKVDQAFDMLDVMRVRGIVPNLHTYNTLISGLLNLR 416

Query: 276 RLDIPIPL-NALPVMKVLRWSFSDV--IHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYD 332
           RLD  + L N +  + V   ++S V  I   G+  +   A     +M+  G+ PS    +
Sbjct: 417 RLDEALELFNNMESLGVAPTAYSYVLFIDYYGKLGDPEKALDTFEKMKKRGIMPSIAACN 476

Query: 333 GFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVEC-SKALELDLAEALLDQISR 391
             + ++     +R   ++   +    L P DS    + ++C SKA ++D A  LL ++  
Sbjct: 477 ASLYSLAEMGRIREAKDIFNDIHNCGLSP-DSVTYNMMMKCYSKAGQIDKATKLLTEMLS 535

Query: 392 CTNPKPFSAFLAACDTMDKPER---AIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYE 447
                      +  DT+ K  R   A ++F +++  KL P + TY +L +  G      +
Sbjct: 536 EGCEPDIIVVNSLIDTLYKAGRVDEAWQMFGRLKDLKLAPTVVTYNILITGLG------K 589

Query: 448 EGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPL 507
           EG +   +D       +   M  +    + ++   LL  L     +   ++ FC      
Sbjct: 590 EGKLLKALD-------LFGSMKESGCPPNTVTFNALLDCLCKNDAVDLALKMFCRMTIMN 642

Query: 508 GTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSAS 564
            +P   TYNT+++ L++   +  A   + QMK    P +   Y ++       R   +  
Sbjct: 643 CSPDVLTYNTIIYGLIKEGRAGYAFWFYHQMKKFLSPDHVTLYTLLPGVVKDGRVEDAIK 702

Query: 565 ALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKA 624
            ++  + + G       +  L++ +L   + +EA++  + +    I  D  L   +++  
Sbjct: 703 IVMEFVHQSGLQTSNQVWGELMECILIEAEIEEAISFAEGLVCNSICQDDNLILPLIRVL 762

Query: 625 C-EKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEE 683
           C +K  +D  +   +        P P + + +  G + C    +A++    +     C  
Sbjct: 763 CKQKKALDAKKLFDKFTKSLGTHPTPESYNCLMDGLLGCNITEAALKLFVEMKNAGCCPN 822

Query: 684 VST 686
           + T
Sbjct: 823 IFT 825



 Score = 66.6 bits (161), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 56/278 (20%), Positives = 119/278 (42%), Gaps = 17/278 (6%)

Query: 412 ERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           + A+K++ +M  + L+P ++TY  L    G             + D+   ++ +E +M  
Sbjct: 209 KEALKVYKRMISEGLKPSMKTYSALMVALGR------------RRDTGTIMDLLE-EMET 255

Query: 471 NNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHR 527
             ++ +  +    ++ LG  G I +   +++   D        TY  ++ +L  A +  +
Sbjct: 256 LGLRPNIYTYTICIRVLGRAGRIDDAYGILKTMEDEGCGPDVVTYTVLIDALCAAGKLDK 315

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A E++ +M+     P+  TY  ++         ++     S M  DG+ P  +TYT L++
Sbjct: 316 AKELYTKMRASSHKPDLVTYITLMSKFGNYGDLETVKRFWSEMEADGYAPDVVTYTILVE 375

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
            L   G  D+A ++LD++ + GI  ++  YNT++       R+D    +   M    V P
Sbjct: 376 ALCKSGKVDQAFDMLDVMRVRGIVPNLHTYNTLISGLLNLRRLDEALELFNNMESLGVAP 435

Query: 648 DPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVS 685
              +       Y   G    A++  + +  R +   ++
Sbjct: 436 TAYSYVLFIDYYGKLGDPEKALDTFEKMKKRGIMPSIA 473



 Score = 65.9 bits (159), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 82/363 (22%), Positives = 145/363 (39%), Gaps = 62/363 (17%)

Query: 298  DVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQN 357
            D +  C  T+    A +L ++M++ G  P+  TY+  + A    + +    E+   M   
Sbjct: 796  DGLLGCNITE---AALKLFVEMKNAGCCPNIFTYNLLLDAHGKSKRIDELFELYNEMLCR 852

Query: 358  NLKPQDST----IATL--SVECSKALELDLAEALLDQISRCTNPKP--FSAFLAACDTMD 409
              KP   T    I+ L  S   +KAL+L       + IS   +P P  +   +       
Sbjct: 853  GCKPNIITHNIIISALVKSNSINKALDL-----YYEIISGDFSPTPCTYGPLIGGLLKAG 907

Query: 410  KPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
            + E A+KIF +M   + +P+   Y +L + FG      + GN+    D  KR       M
Sbjct: 908  RSEEAMKIFEEMPDYQCKPNCAIYNILINGFG------KAGNVNIACDLFKR-------M 954

Query: 469  ARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRA 528
             +  I+    S   L++ L   G + + + YF                            
Sbjct: 955  IKEGIRPDLKSYTILVECLFMTGRVDDAVHYF---------------------------- 986

Query: 529  MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
                +++K  G+ P+  +YN+MI+     R  + A +L S M   G  P+  TY ALI  
Sbjct: 987  ----EELKLTGLDPDTVSYNLMINGLGKSRRLEEALSLFSEMKNRGISPELYTYNALILH 1042

Query: 589  LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
              + G  D+A  + + +   G+  +V  YN +++   + G  D    + ++M      P+
Sbjct: 1043 FGNAGMVDQAGKMFEELQFMGLEPNVFTYNALIRGHSKSGNKDRAFSVFKKMMIVGCSPN 1102

Query: 649  PST 651
              T
Sbjct: 1103 AGT 1105



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 78/176 (44%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TY+ ++ +L   +++   M++ ++M+T G+ PN  TY I I           A  ++  M
Sbjct: 229 TYSALMVALGRRRDTGTIMDLLEEMETLGLRPNIYTYTICIRVLGRAGRIDDAYGILKTM 288

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
             +G  P  +TYT LI  L   G  D+A  L   +       D++ Y T++ K    G +
Sbjct: 289 EDEGCGPDVVTYTVLIDALCAAGKLDKAKELYTKMRASSHKPDLVTYITLMSKFGNYGDL 348

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           + ++    +M  +   PD  T   +       G  + A + L V+ +R +   + T
Sbjct: 349 ETVKRFWSEMEADGYAPDVVTYTILVEALCKSGKVDQAFDMLDVMRVRGIVPNLHT 404



 Score = 45.8 bits (107), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 54/263 (20%), Positives = 102/263 (38%), Gaps = 20/263 (7%)

Query: 299  VIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNN 358
            +I A  ++ +   A  L  ++ S    P+  TY   I  ++        M++ + M    
Sbjct: 864  IISALVKSNSINKALDLYYEIISGDFSPTPCTYGPLIGGLLKAGRSEEAMKIFEEMPDYQ 923

Query: 359  LKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNP--KPFSAFLAACDTMDKPERAI 415
             KP  +    L     KA  +++A  L  + I     P  K ++  +       + + A+
Sbjct: 924  CKPNCAIYNILINGFGKAGNVNIACDLFKRMIKEGIRPDLKSYTILVECLFMTGRVDDAV 983

Query: 416  KIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQ 474
              F +++   L PD  +Y L+ +  G      E  ++FS+             M    I 
Sbjct: 984  HYFEELKLTGLDPDTVSYNLMINGLGKSRRLEEALSLFSE-------------MKNRGIS 1030

Query: 475  HSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEI 531
                +   L+   G  GM+ +  + F + +     P   TYN ++    ++    RA  +
Sbjct: 1031 PELYTYNALILHFGNAGMVDQAGKMFEELQFMGLEPNVFTYNALIRGHSKSGNKDRAFSV 1090

Query: 532  FKQMKTCGIPPNAATYNIMIDCC 554
            FK+M   G  PNA T+  + + C
Sbjct: 1091 FKKMMIVGCSPNAGTFAQLPNKC 1113


>gi|294945390|ref|XP_002784656.1| pentatricopeptide repeat-containing protein, putative [Perkinsus
           marinus ATCC 50983]
 gi|239897841|gb|EER16452.1| pentatricopeptide repeat-containing protein, putative [Perkinsus
           marinus ATCC 50983]
          Length = 692

 Score = 92.4 bits (228), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 108/475 (22%), Positives = 202/475 (42%), Gaps = 72/475 (15%)

Query: 200 LKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMM 259
           L++   Q + SA HE     +  Y   ++     +W+ T    L  A      M    ++
Sbjct: 76  LQVGYGQGDQSAGHE---RAVGRYMQHLYGGYAAIWTVTGYNCLLDAAVQCDDM---DVV 129

Query: 260 GKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQM 319
           GK++      GRL     D+               SF+ V+    +  N   A + M +M
Sbjct: 130 GKVFEEMKDAGRL-----DV--------------VSFNTVMKGHLKQGNMRQARKTMREM 170

Query: 320 QSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL---------S 370
           Q  G  P+  TY+  + ++V  +  R   EV++ M+ N L P   T + L         S
Sbjct: 171 QEAGFPPNVITYNELLHSMVQGKDKRGIWEVVEEMKANGLPPNKVTCSILLKALTSHSHS 230

Query: 371 VECSKALEL-DLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDI 429
            +  + +EL +     +D++        FS+ + AC  + K    + I +   Q+     
Sbjct: 231 SDVVRTMELVERMRGEMDEVL-------FSSVIEACIRIGK----LDILSNKLQQ----- 274

Query: 430 RTYELLFSLFGNVNAPYEEGNMFSQVDSAK---RINAIEMDMARNNIQHSHISMKNLLKA 486
             Y     L   + AP   G+M      AK   R+ ++  +M +  ++ + I++  ++ A
Sbjct: 275 --YTAGGGLVKGLTAP-TYGSMIKAYGHAKDLRRVWSLWSEMRQRAVKPTAITLGCMVDA 331

Query: 487 L-------GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCG 539
           L        A  +I E++    D    + T  Y+TVL     +++  R  +I+++M++  
Sbjct: 332 LVTNRYPEDALSLIHEMLN-TPDCADCVNTIVYSTVLKGFALSKQVDRVFDIYQEMRSNK 390

Query: 540 IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEAL 599
           IP N  ++N ++D C+     +  S +   M   G  P  +TY+ ++K     GD D A 
Sbjct: 391 IPLNTVSFNTIMDACARSGSMERVSDIFREMDEQGIEPDIITYSTVVKGYCLAGDVDTAF 450

Query: 600 NLL-DL--VSLEG----IPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
           ++L D+  VS  G       D ++YN++L    ++ R+D    ++++M  N V P
Sbjct: 451 SVLRDMSGVSRRGGRKKFAPDEIMYNSLLDGCAKQHRVDQALQLLDEMRANGVAP 505



 Score = 46.6 bits (109), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 63/142 (44%), Gaps = 6/142 (4%)

Query: 90  FFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFL- 148
           F  I++ CARS     V + +R M+E+ I  +   Y  +++  C  G ++ A +++  + 
Sbjct: 398 FNTIMDACARSGSMERVSDIFREMDEQGIEPDIITYSTVVKGYCLAGDVDTAFSVLRDMS 457

Query: 149 -----GERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLA 203
                G R    P   +YNS L  CAK H +  A   LD M +  V  +  T + L+KL 
Sbjct: 458 GVSRRGGRKKFAPDEIMYNSLLDGCAKQHRVDQALQLLDEMRANGVAPSNYTLSILVKLL 517

Query: 204 VWQKNLSAVHEIWEDYIKHYSL 225
              + L     + ED    Y  
Sbjct: 518 GRARRLLEAFNMVEDLSTAYGF 539



 Score = 45.8 bits (107), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 92/471 (19%), Positives = 175/471 (37%), Gaps = 78/471 (16%)

Query: 161 YNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDY- 219
           +N+ +    K  +M  A   +  M       N +TY ELL   V  K+   + E+ E+  
Sbjct: 147 FNTVMKGHLKQGNMRQARKTMREMQEAGFPPNVITYNELLHSMVQGKDKRGIWEVVEEMK 206

Query: 220 ---IKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSR 276
              +    ++   L K + S +   D+    E ++ M     M ++  +   E  +R  +
Sbjct: 207 ANGLPPNKVTCSILLKALTSHSHSSDVVRTMELVERM--RGEMDEVLFSSVIEACIRIGK 264

Query: 277 LDI------PIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHT 330
           LDI              V  +   ++  +I A G  ++      L  +M+   ++P++ T
Sbjct: 265 LDILSNKLQQYTAGGGLVKGLTAPTYGSMIKAYGHAKDLRRVWSLWSEMRQRAVKPTAIT 324

Query: 331 YDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQIS 390
               + A+V++R   + + ++  M    L   D      ++  S  L+     AL  Q+ 
Sbjct: 325 LGCMVDALVTNRYPEDALSLIHEM----LNTPDCADCVNTIVYSTVLK---GFALSKQVD 377

Query: 391 RC--------TNPKP-----FSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELL- 435
           R         +N  P     F+  + AC      ER   IF +M  Q + PDI TY  + 
Sbjct: 378 RVFDIYQEMRSNKIPLNTVSFNTIMDACARSGSMERVSDIFREMDEQGIEPDIITYSTVV 437

Query: 436 --FSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMI 493
             + L G+V+  +                ++  DM       S +S +   K    + ++
Sbjct: 438 KGYCLAGDVDTAF----------------SVLRDM-------SGVSRRGGRKKFAPDEIM 474

Query: 494 RELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC 553
                             YN++L    +     +A+++  +M+  G+ P+  T +I++  
Sbjct: 475 ------------------YNSLLDGCAKQHRVDQALQLLDEMRANGVAPSNYTLSILVKL 516

Query: 554 CSIIRCFKSASALV-SMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLD 603
               R    A  +V  +    GF      YT LI+  +       A+ L D
Sbjct: 517 LGRARRLLEAFNMVEDLSTAYGFRANVHVYTCLIQACVHNKQLQRAMKLHD 567


>gi|60390261|sp|Q76C99.1|RF1_ORYSI RecName: Full=Protein Rf1, mitochondrial; AltName: Full=Fertility
           restorer; AltName: Full=Protein PPR; AltName:
           Full=Restorer for CMS; Flags: Precursor
 gi|33859440|dbj|BAC77665.2| PPR protein [Oryza sativa Indica Group]
 gi|33859442|dbj|BAC77666.2| Rf1 [Oryza sativa Indica Group]
 gi|41152689|dbj|BAD08214.1| fertility restorer [Oryza sativa Indica Group]
 gi|46091159|dbj|BAD13708.1| PPR protein [Oryza sativa Indica Group]
 gi|47550657|dbj|BAD20283.1| restorer for CMS [Oryza sativa Indica Group]
          Length = 791

 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 114/495 (23%), Positives = 208/495 (42%), Gaps = 28/495 (5%)

Query: 206 QKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYI- 264
           Q+ L  +H + +D        + S    +  F +  D   AY T   M+   ++  +   
Sbjct: 175 QEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTY 234

Query: 265 NRTSEGRLRSSRLDIPIP-LNALPVMKVLR--WSFSDVIHACGRTQNSGLAEQLMLQMQS 321
           N       ++  +D  +  LN +    V+    +++ ++H    +     A   + +M+S
Sbjct: 235 NSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRS 294

Query: 322 LGLQPSSHTYDGFIRAIVSDRGLRNG--MEVLKI---MQQNNLKPQDSTIATLSVECSKA 376
            G++P   TY     +++ D   +NG  ME  KI   M +  LKP+ +T  TL    +  
Sbjct: 295 DGVEPDVVTY-----SLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATK 349

Query: 377 LELDLAEALLDQISR-CTNPK--PFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTY 432
             L     LLD + R   +P    FS  + A     K ++A+ +F+KMRQ+ L P+  TY
Sbjct: 350 GALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTY 409

Query: 433 ELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGM 492
             +  +        +    F Q+        I+  ++  NI ++  S+ + L        
Sbjct: 410 GAVIGILCKSGRVEDAMLYFEQM--------IDEGLSPGNIVYN--SLIHGLCTCNKWER 459

Query: 493 IRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID 552
             ELI    D    L T  +N+++ S  +      + ++F+ M   G+ PN  TYN +I+
Sbjct: 460 AEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLIN 519

Query: 553 CCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPH 612
              +      A  L+S MV  G  P T+TY+ LI         ++AL L   +   G+  
Sbjct: 520 GYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSP 579

Query: 613 DVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEAL 672
           D++ YN IL+   +  R    + +  ++ ++  Q + ST + +  G       + A++  
Sbjct: 580 DIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMF 639

Query: 673 QVLSMRMLCEEVSTL 687
           Q L +  L  E  T 
Sbjct: 640 QNLCLMDLKLEARTF 654



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 108/522 (20%), Positives = 207/522 (39%), Gaps = 54/522 (10%)

Query: 153 GIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELL----KLAVWQKN 208
           GI P +  YNS + A  K  +M  A   L+ M    V  + +TY  +L         ++ 
Sbjct: 226 GILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEA 285

Query: 209 LSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQH---MVALAMMGKLYIN 265
           +  + ++  D ++   ++   L  ++    R  + +  ++++        +   G L   
Sbjct: 286 IGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQG 345

Query: 266 RTSEGRLRS--SRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLML---QMQ 320
             ++G L      LD+ +     P      + FS +I A  +    G  +Q ML   +M+
Sbjct: 346 YATKGALVEMHGLLDLMVRNGIHPD----HYVFSILICAYAK---QGKVDQAMLVFSKMR 398

Query: 321 SLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELD 380
             GL P++ TY   I  +     + + M   + M    L P +    +L        + +
Sbjct: 399 QQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWE 458

Query: 381 LAEAL-LDQISR--CTNPKPFSAFLAACDTMDKPERAI---KIFAKM-RQKLRPDIRTYE 433
            AE L L+ + R  C N   F++ +   D+  K  R I   K+F  M R  ++P++ TY 
Sbjct: 459 RAEELILEMLDRGICLNTIFFNSII---DSHCKEGRVIESEKLFELMVRIGVKPNVITYN 515

Query: 434 LLFS--------------LFGNVNAPYEEG--------NMFSQVDSAKRINAIEMDMARN 471
            L +              L G V+   +          N + ++   +    +  +M  +
Sbjct: 516 TLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESS 575

Query: 472 NIQHSHISMKNLLKAL---GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRA 528
            +    I+   +L+ L         +EL     +S T +   TYN +LH L + + +  A
Sbjct: 576 GVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDA 635

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
           +++F+ +    +   A T+NIMID    +     A  L      +G  P   TY  + + 
Sbjct: 636 LQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAEN 695

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           ++  G  +E   L   +   G   D  + N I+++  ++G I
Sbjct: 696 IIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEI 737



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 108/566 (19%), Positives = 209/566 (36%), Gaps = 53/566 (9%)

Query: 128 MMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFL-GACAKLHSMVHANLCLDLMDS 186
           +++ LC      +A +++       G  P +  YN  L G C +  S     L   + D 
Sbjct: 128 LLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADD 187

Query: 187 RMVGK--NEVTYTELL----KLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRL 240
           R  G   + V+YT ++    K     K  S  HE+ +  I      + +    + +  + 
Sbjct: 188 RGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILP---DVVTYNSIIAALCKA 244

Query: 241 RDLKSAYETLQHMVALAMMGK-LYINRTSEGRLRSSRLDIPIPLNALPVMKVLR------ 293
           + +  A E L  MV   +M   +  N    G   S +     P  A+  +K +R      
Sbjct: 245 QAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQ-----PKEAIGFLKKMRSDGVEP 299

Query: 294 --WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVL 351
              ++S ++    +      A ++   M   GL+P   TY   ++   +   L     +L
Sbjct: 300 DVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLL 359

Query: 352 KIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI-SRCTNPKP--FSAFLAACDTM 408
            +M +N + P     + L    +K  ++D A  +  ++  +  NP    + A +      
Sbjct: 360 DLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKS 419

Query: 409 DKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNA-PYEEGNMFSQVDSAKRINAIEM 466
            + E A+  F +M  + L P    Y  L       N     E  +   +D    +N I  
Sbjct: 420 GRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFF 479

Query: 467 D---------------------MARNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCD 502
           +                     M R  ++ + I+   L+      G + E   L+     
Sbjct: 480 NSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVS 539

Query: 503 SKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKS 562
                 T TY+T+++   +      A+ +FK+M++ G+ P+  TYNI++      R   +
Sbjct: 540 VGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAA 599

Query: 563 ASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILK 622
           A  L   +   G   +  TY  ++  L      D+AL +   + L  +  +   +N ++ 
Sbjct: 600 AKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMID 659

Query: 623 KACEKGRIDVIEFIIEQMHQNKVQPD 648
              + GR D  + +      N + P+
Sbjct: 660 ALLKVGRNDEAKDLFVAFSSNGLVPN 685



 Score = 41.2 bits (95), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 72/167 (43%), Gaps = 9/167 (5%)

Query: 528 AMEIFKQMKTCG---IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
           A+  + +M   G   + P+  TY I+I CC          A +  +++ GF    + +T 
Sbjct: 68  AVSRYNRMARAGADEVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTP 127

Query: 585 LIKILLDYGDFDEALNLL--DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642
           L+K L       +A++++   +  L  IP +V  YN +LK  C++ R      ++  M  
Sbjct: 128 LLKGLCADKRTSDAMDIVLRRMTELGCIP-NVFSYNILLKGLCDENRSQEALELLHMMAD 186

Query: 643 NK---VQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           ++     PD  +   V +G+   G  + A      +  R +  +V T
Sbjct: 187 DRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVT 233


>gi|356556194|ref|XP_003546411.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Glycine max]
          Length = 829

 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/282 (24%), Positives = 126/282 (44%), Gaps = 16/282 (5%)

Query: 396 KPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQ 454
           + ++  L +     K +RAI +F KM++  L P + TY ++  ++G +   ++       
Sbjct: 216 RAYTTILHSYARTGKYKRAIDLFGKMKEIGLDPTLVTYNVMLDVYGKMGRSWD------- 268

Query: 455 VDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSK---TPLGTPT 511
                RI  +  +M    ++    +   ++ A G EGM+ E  ++  + K      GT T
Sbjct: 269 -----RILELLDEMRSKGLELDEFTCSTVISACGREGMLDEARKFLAELKFNGYKPGTVT 323

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           YN++L    +A     A+ I K+M+    PP++ TYN +              A++  M 
Sbjct: 324 YNSMLQVFGKAGIYTEALSILKEMEDNNCPPDSVTYNELAATYVRAGFLDEGMAVIDTMT 383

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
             G  P  +TYT +I      G  D+AL L  L+   G   +V  YN++L    +K R +
Sbjct: 384 SKGVMPNAITYTTVIDAYGKAGREDDALRLFSLMKDLGCAPNVYTYNSVLAMLGKKSRTE 443

Query: 632 VIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
            +  ++ +M  N   P+ +T + + +     G HN   + L+
Sbjct: 444 DVIKVLCEMKLNGCAPNRATWNTMLAVCSEEGKHNYVNKVLR 485



 Score = 80.5 bits (197), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 89/409 (21%), Positives = 166/409 (40%), Gaps = 37/409 (9%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ VI A G+      A +L   M+ LG  P+ +TY+  +  +       + ++VL  M
Sbjct: 393 TYTTVIDAYGKAGREDDALRLFSLMKDLGCAPNVYTYNSVLAMLGKKSRTEDVIKVLCEM 452

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRC---TNPKPFSAFLAACDTMDKP 411
           + N   P  +T  T+   CS+  + +    +L ++  C    +   F+  ++A       
Sbjct: 453 KLNGCAPNRATWNTMLAVCSEEGKHNYVNKVLREMKNCGFEPDKDTFNTLISAYARCGSE 512

Query: 412 ERAIKIFAKM-RQKLRPDIRTYELLFSLF---GNVNA--------------PYEEG---- 449
             + K++ +M +    P + TY  L +     G+  A              P E      
Sbjct: 513 VDSAKMYGEMVKSGFTPCVTTYNALLNALARRGDWKAAESVIQDMRTKGFKPNENSYSLL 572

Query: 450 -NMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLL----KALGAEGMIRELIQYFCDSK 504
            + +S+  + K I  +E ++   ++  S I ++ L+    K     GM R   Q      
Sbjct: 573 LHCYSKAGNVKGIEKVEKEIYDGHVFPSWILLRTLVLTNHKCRHLRGMERAFDQLQKYGY 632

Query: 505 TPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIR---CFK 561
            P      N++L      +   +A E+   +  CG+ PN  TYN ++D    +R   C+K
Sbjct: 633 KP-DLVVINSMLSMFARNKMFSKAREMLHFIHECGLQPNLFTYNCLMDL--YVREGECWK 689

Query: 562 SASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTIL 621
           +   L  +    G  P  ++Y  +IK     G   EA+ +L  ++ +GI   ++ YNT L
Sbjct: 690 AEEVLKGIQ-NSGPEPDVVSYNTVIKGFCRKGLMQEAIGVLSEMTTKGIQPTIVTYNTFL 748

Query: 622 KKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAME 670
                    D    +I  M ++  +P   T   +  GY   G +  AM+
Sbjct: 749 SGYAGMELFDEANEVIRFMIEHNCRPSELTYKILVDGYCKAGKYEEAMD 797



 Score = 79.7 bits (195), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 90/416 (21%), Positives = 172/416 (41%), Gaps = 38/416 (9%)

Query: 264 INRTSEGRLRSSRLD-IPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSL 322
           + R S+  + S   D IP+   +L V      +++ ++H+  RT     A  L  +M+ +
Sbjct: 190 LGRESQHSIASKLFDLIPVEKYSLDVR-----AYTTILHSYARTGKYKRAIDLFGKMKEI 244

Query: 323 GLQPSSHTYDGFIRAIVS-DRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDL 381
           GL P+  TY+  +       R     +E+L  M+   L+  + T +T+   C +   LD 
Sbjct: 245 GLDPTLVTYNVMLDVYGKMGRSWDRILELLDEMRSKGLELDEFTCSTVISACGREGMLDE 304

Query: 382 AEALLDQISRCTNPKP----FSAFLAACDTMDKPERAIKIFAKMR-QKLRPDIRTYELLF 436
           A   L ++ +    KP    +++ L           A+ I  +M      PD  TY  L 
Sbjct: 305 ARKFLAEL-KFNGYKPGTVTYNSMLQVFGKAGIYTEALSILKEMEDNNCPPDSVTYNELA 363

Query: 437 SLF----------GNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNL--- 483
           + +            ++    +G M + +     I+A       ++       MK+L   
Sbjct: 364 ATYVRAGFLDEGMAVIDTMTSKGVMPNAITYTTVIDAYGKAGREDDALRLFSLMKDLGCA 423

Query: 484 ---------LKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEI 531
                    L  LG +    ++I+  C+ K     P   T+NT+L    E  + +   ++
Sbjct: 424 PNVYTYNSVLAMLGKKSRTEDVIKVLCEMKLNGCAPNRATWNTMLAVCSEEGKHNYVNKV 483

Query: 532 FKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLD 591
            ++MK CG  P+  T+N +I   +       ++ +   MV+ GF P   TY AL+  L  
Sbjct: 484 LREMKNCGFEPDKDTFNTLISAYARCGSEVDSAKMYGEMVKSGFTPCVTTYNALLNALAR 543

Query: 592 YGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
            GD+  A +++  +  +G   +   Y+ +L    + G +  IE + ++++   V P
Sbjct: 544 RGDWKAAESVIQDMRTKGFKPNENSYSLLLHCYSKAGNVKGIEKVEKEIYDGHVFP 599



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 54/237 (22%), Positives = 92/237 (38%), Gaps = 42/237 (17%)

Query: 504 KTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID----------- 552
           K  L    Y T+LHS     +  RA+++F +MK  G+ P   TYN+M+D           
Sbjct: 210 KYSLDVRAYTTILHSYARTGKYKRAIDLFGKMKEIGLDPTLVTYNVMLDVYGKMGRSWDR 269

Query: 553 -------------------CCSIIRC------FKSASALVSMMVRDGFYPQTMTYTALIK 587
                              C ++I           A   ++ +  +G+ P T+TY ++++
Sbjct: 270 ILELLDEMRSKGLELDEFTCSTVISACGREGMLDEARKFLAELKFNGYKPGTVTYNSMLQ 329

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
           +    G + EAL++L  +     P D + YN +       G +D    +I+ M    V P
Sbjct: 330 VFGKAGIYTEALSILKEMEDNNCPPDSVTYNELAATYVRAGFLDEGMAVIDTMTSKGVMP 389

Query: 648 DPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEE------KRSDFEDLI 698
           +  T   V   Y   G  + A+    ++        V T         K+S  ED+I
Sbjct: 390 NAITYTTVIDAYGKAGREDDALRLFSLMKDLGCAPNVYTYNSVLAMLGKKSRTEDVI 446



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 81/478 (16%), Positives = 178/478 (37%), Gaps = 64/478 (13%)

Query: 297 SDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQ 356
           S VI ACGR      A + + +++  G +P + TY+  ++           + +LK M+ 
Sbjct: 290 STVISACGREGMLDEARKFLAELKFNGYKPGTVTYNSMLQVFGKAGIYTEALSILKEMED 349

Query: 357 NNLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKPER 413
           NN  P   T   L+    +A  LD   A++D ++      N   ++  + A     + + 
Sbjct: 350 NNCPPDSVTYNELAATYVRAGFLDEGMAVIDTMTSKGVMPNAITYTTVIDAYGKAGREDD 409

Query: 414 AIKIFAKMRQ-KLRPDIRTYELLFSLFG-----------------NVNAPYEEG-----N 450
           A+++F+ M+     P++ TY  + ++ G                 N  AP          
Sbjct: 410 ALRLFSLMKDLGCAPNVYTYNSVLAMLGKKSRTEDVIKVLCEMKLNGCAPNRATWNTMLA 469

Query: 451 MFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP 510
           + S+      +N +  +M     +    +   L+ A    G   +  + + +      TP
Sbjct: 470 VCSEEGKHNYVNKVLREMKNCGFEPDKDTFNTLISAYARCGSEVDSAKMYGEMVKSGFTP 529

Query: 511 ---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSII---------- 557
              TYN +L++L    +   A  + + M+T G  PN  +Y++++ C S            
Sbjct: 530 CVTTYNALLNALARRGDWKAAESVIQDMRTKGFKPNENSYSLLLHCYSKAGNVKGIEKVE 589

Query: 558 -------------------------RCFKSASALVSMMVRDGFYPQTMTYTALIKILLDY 592
                                    R  +        + + G+ P  +   +++ +    
Sbjct: 590 KEIYDGHVFPSWILLRTLVLTNHKCRHLRGMERAFDQLQKYGYKPDLVVINSMLSMFARN 649

Query: 593 GDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTC 652
             F +A  +L  +   G+  ++  YN ++     +G     E +++ +  +  +PD  + 
Sbjct: 650 KMFSKAREMLHFIHECGLQPNLFTYNCLMDLYVREGECWKAEEVLKGIQNSGPEPDVVSY 709

Query: 653 HFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDFEDLILAEDSEAESRIL 710
           + V  G+   G    A+  L  ++ + +   + T     S +  + L +++    R +
Sbjct: 710 NTVIKGFCRKGLMQEAIGVLSEMTTKGIQPTIVTYNTFLSGYAGMELFDEANEVIRFM 767



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 105/513 (20%), Positives = 192/513 (37%), Gaps = 72/513 (14%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y  M+Q   K G   EA +++  + E     P    YN       +   +      +D M
Sbjct: 324 YNSMLQVFGKAGIYTEALSILKEM-EDNNCPPDSVTYNELAATYVRAGFLDEGMAVIDTM 382

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLK 244
            S+ V  N +TYT ++    + K   A  E  +D ++ +SL              ++DL 
Sbjct: 383 TSKGVMPNAITYTTVID--AYGK---AGRE--DDALRLFSL--------------MKDLG 421

Query: 245 SAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNAL---------------PVM 289
            A     +   LAM+GK          L   +L+   P  A                 V 
Sbjct: 422 CAPNVYTYNSVLAMLGKKSRTEDVIKVLCEMKLNGCAPNRATWNTMLAVCSEEGKHNYVN 481

Query: 290 KVLRW-----------SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAI 338
           KVLR            +F+ +I A  R  +   + ++  +M   G  P   TY+  + A+
Sbjct: 482 KVLREMKNCGFEPDKDTFNTLISAYARCGSEVDSAKMYGEMVKSGFTPCVTTYNALLNAL 541

Query: 339 VSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPF 398
                 +    V++ M+    KP +++ + L    SKA  +   E +  +I    +   F
Sbjct: 542 ARRGDWKAAESVIQDMRTKGFKPNENSYSLLLHCYSKAGNVKGIEKVEKEI---YDGHVF 598

Query: 399 SAFLA---------ACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEG 449
            +++           C  +   ERA     K   K  PD+     + S+F          
Sbjct: 599 PSWILLRTLVLTNHKCRHLRGMERAFDQLQKYGYK--PDLVVINSMLSMFA-------RN 649

Query: 450 NMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGT 509
            MFS+  + + ++ I     + N+  ++  + +L    G      E+++   +S      
Sbjct: 650 KMFSK--AREMLHFIHECGLQPNL-FTYNCLMDLYVREGECWKAEEVLKGIQNSGPEPDV 706

Query: 510 PTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSM 569
            +YNTV+           A+ +  +M T GI P   TYN  +   + +  F  A+ ++  
Sbjct: 707 VSYNTVIKGFCRKGLMQEAIGVLSEMTTKGIQPTIVTYNTFLSGYAGMELFDEANEVIRF 766

Query: 570 MVRDGFYPQTMTYTALIKILLDYGDFDEALNLL 602
           M+     P  +TY  L+      G ++EA++ +
Sbjct: 767 MIEHNCRPSELTYKILVDGYCKAGKYEEAMDFV 799


>gi|297737955|emb|CBI27156.3| unnamed protein product [Vitis vinifera]
          Length = 625

 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 79/343 (23%), Positives = 149/343 (43%), Gaps = 21/343 (6%)

Query: 351 LKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDK 410
           L++++   +  +D+    L   C+  L L+ AEA+  ++ +   P     + A  D + K
Sbjct: 230 LELLEARCVPTEDTYALLLKAYCTSGL-LEKAEAVFAEMRKYGFPPSAVVYNAYIDGLMK 288

Query: 411 ---PERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM 466
               ++A++IF +M R + +P   TY +L +L+G  +  Y    +F ++ S K       
Sbjct: 289 GGDTQKAVEIFERMKRDRCQPSTATYTMLINLYGKASKSYMALKVFHEMRSQK------- 341

Query: 467 DMARNNIQHSHISMKNLLKALGAEGM---IRELIQYFCDSKTPLGTPTYNTVLHSLVEAQ 523
              + NI     +   L+ A   EG+     E+ +   ++        YN ++ +   A 
Sbjct: 342 --CKPNI----CTFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALMEAYSRAG 395

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
             + A EIF  M+  G  P+ A+YNIM+D        + A A+  +M R G  P   ++ 
Sbjct: 396 FPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEVMKRLGITPTMKSHM 455

Query: 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
            L+      G   +   +++ +   GI  D  + N++L      G+ + +E ++  M + 
Sbjct: 456 LLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEKMEEVLTAMEKG 515

Query: 644 KVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
               D ST + + + Y   GF     E  + L  R L  +V T
Sbjct: 516 PYPADISTYNILINIYGRAGFFARMEELFRSLPARNLIPDVVT 558



 Score = 65.9 bits (159), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 80/370 (21%), Positives = 145/370 (39%), Gaps = 36/370 (9%)

Query: 308 NSGL---AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDS 364
            SGL   AE +  +M+  G  PS+  Y+ +I  ++     +  +E+ + M+++  +P  +
Sbjct: 253 TSGLLEKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTA 312

Query: 365 TIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDKPERAIKIFAK 420
           T   L     KA +  +A  +  ++ R    KP    F+A + A       E+A +IF +
Sbjct: 313 TYTMLINLYGKASKSYMALKVFHEM-RSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQ 371

Query: 421 MRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFS----------------QVDSAKRIN- 462
           +++  L PD+  Y  L   +     PY    +FS                 VD+  R   
Sbjct: 372 LQEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGL 431

Query: 463 -----AIEMDMARNNIQHSHISMKNLLKALGAEGMI---RELIQYFCDSKTPLGTPTYNT 514
                A+   M R  I  +  S   LL A    G +    E++     S     T   N+
Sbjct: 432 HEDAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNS 491

Query: 515 VLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDG 574
           +L+      +  +  E+   M+    P + +TYNI+I+       F     L   +    
Sbjct: 492 MLNLYGRLGQFEKMEEVLTAMEKGPYPADISTYNILINIYGRAGFFARMEELFRSLPARN 551

Query: 575 FYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG-RIDVI 633
             P  +T+T+ I        ++  L + + +   G   D      +L  AC  G +I  +
Sbjct: 552 LIPDVVTWTSRIGAYSRRKQYNRCLEVFEEMIDAGCYPDGGTAKVLL-SACSNGDQIQEV 610

Query: 634 EFIIEQMHQN 643
             +I  MH++
Sbjct: 611 TTVIRTMHKD 620



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 56/291 (19%), Positives = 124/291 (42%), Gaps = 30/291 (10%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNG-MEVLKI 353
           +F+ +++A  R      AE++  Q+Q  GL+P  + Y+  + A  S  G   G  E+  +
Sbjct: 348 TFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALMEA-YSRAGFPYGAAEIFSL 406

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDK 410
           MQ    +P  ++   +     +A   + A+A+ + + R       K     L+A     K
Sbjct: 407 MQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGK 466

Query: 411 PERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
             +  +I  +M +  ++PD      + +L+G +   +E+     +V +A        D++
Sbjct: 467 VAKCEEIVNQMHKSGIKPDTFVLNSMLNLYGRL-GQFEK---MEEVLTAMEKGPYPADIS 522

Query: 470 RNNI-------QHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEA 522
             NI             M+ L ++L A  +I +++             T+ + + +    
Sbjct: 523 TYNILINIYGRAGFFARMEELFRSLPARNLIPDVV-------------TWTSRIGAYSRR 569

Query: 523 QESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRD 573
           ++ +R +E+F++M   G  P+  T  +++  CS     +  + ++  M +D
Sbjct: 570 KQYNRCLEVFEEMIDAGCYPDGGTAKVLLSACSNGDQIQEVTTVIRTMHKD 620



 Score = 39.3 bits (90), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 25/110 (22%), Positives = 46/110 (41%)

Query: 542 PNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNL 601
           P+   YN++ID       +K A +    ++     P   TY  L+K     G  ++A  +
Sbjct: 204 PDVICYNLLIDAYGQKSLYKKAESTYLELLEARCVPTEDTYALLLKAYCTSGLLEKAEAV 263

Query: 602 LDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
              +   G P   ++YN  +    + G       I E+M +++ QP  +T
Sbjct: 264 FAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTAT 313


>gi|356508736|ref|XP_003523110.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Glycine max]
          Length = 680

 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 117/536 (21%), Positives = 214/536 (39%), Gaps = 64/536 (11%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y +++ AL +   L EA    + L +R  + P+   YN+ +GACA+   +  A   +  M
Sbjct: 142 YSILINALGRSEKLYEA----FLLSQRQVLTPL--TYNALIGACARNGDVEKALNLMSKM 195

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSA------VHEIWEDYIKHYSLSIFSLRKFVWSFT 238
                  + V Y+ +++       + +        EI  D I+   +    +   +  F+
Sbjct: 196 RRDGYQPDFVNYSSIIQYLTRSNKIDSPILQKLYAEIETDKIE---IDGHLMNDIIVGFS 252

Query: 239 RLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSD 298
           +  D   A      M  LAM         S G            LN  P   V       
Sbjct: 253 KAGDPTRA------MRFLAMA-------QSNG------------LNPKPSTLVA------ 281

Query: 299 VIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNN 358
           VI A G +  +  AE L  +++  GL+P +  Y+  ++  V    L++   V+  M++  
Sbjct: 282 VILALGNSGRTHEAEALFEEIRENGLEPRTRAYNALLKGYVRTGSLKDAEFVVSEMEKAG 341

Query: 359 LKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDKPERA 414
           +KP + T + L    + A   + A  +L ++   +N +P    FS  LA      + +++
Sbjct: 342 VKPDEQTYSLLIDVYAHAGRWESARIVLKEM-EASNVQPNSYVFSRILANYRDKGEWQKS 400

Query: 415 IKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR-NN 472
            ++   M+   ++PD   Y ++   FG  N        F ++ S      I  D+   N 
Sbjct: 401 FQVLKDMKSSGVQPDRHFYNVMIDTFGKYNCLDHAMATFERMLS----EGIPPDIVTWNT 456

Query: 473 IQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIF 532
           +   H          G   M  EL              TYN +++S+ E Q   +     
Sbjct: 457 LIDCHCKS-------GRHDMAEELFSEMQQRGYSPCITTYNIMINSMGEQQRWEQVTAFL 509

Query: 533 KQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDY 592
            +M++ G+ PN+ TY  ++D       F  A   + ++   GF P +  Y ALI      
Sbjct: 510 SKMQSQGLQPNSITYTTLVDVYGKSGRFSDAIECLEVLKSTGFKPTSTMYNALINAYAQR 569

Query: 593 GDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
           G  + A+N   L++ EG+   +L  N+++    E  R      +++ M +N ++PD
Sbjct: 570 GLSELAVNAFRLMTTEGLTPSLLALNSLINAFGEDRRDAEAFAVLQYMKENNIEPD 625



 Score = 80.9 bits (198), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 82/390 (21%), Positives = 156/390 (40%), Gaps = 22/390 (5%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGM--EVLK 352
           +++ +I AC R  +   A  LM +M+  G QP    Y   I+ +     + + +  ++  
Sbjct: 171 TYNALIGACARNGDVEKALNLMSKMRRDGYQPDFVNYSSIIQYLTRSNKIDSPILQKLYA 230

Query: 353 IMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI-SRCTNPKPFS--AFLAACDTMD 409
            ++ + ++     +  + V  SKA +   A   L    S   NPKP +  A + A     
Sbjct: 231 EIETDKIEIDGHLMNDIIVGFSKAGDPTRAMRFLAMAQSNGLNPKPSTLVAVILALGNSG 290

Query: 410 KPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
           +   A  +F ++R+  L P  R Y  L                + +  S K    +  +M
Sbjct: 291 RTHEAEALFEEIRENGLEPRTRAYNALL-------------KGYVRTGSLKDAEFVVSEM 337

Query: 469 ARNNIQHSHISMKNLLKALGAEGM---IRELIQYFCDSKTPLGTPTYNTVLHSLVEAQES 525
            +  ++    +   L+      G     R +++    S     +  ++ +L +  +  E 
Sbjct: 338 EKAGVKPDEQTYSLLIDVYAHAGRWESARIVLKEMEASNVQPNSYVFSRILANYRDKGEW 397

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
            ++ ++ K MK+ G+ P+   YN+MID      C   A A    M+ +G  P  +T+  L
Sbjct: 398 QKSFQVLKDMKSSGVQPDRHFYNVMIDTFGKYNCLDHAMATFERMLSEGIPPDIVTWNTL 457

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           I      G  D A  L   +   G    +  YN ++    E+ R + +   + +M    +
Sbjct: 458 IDCHCKSGRHDMAEELFSEMQQRGYSPCITTYNIMINSMGEQQRWEQVTAFLSKMQSQGL 517

Query: 646 QPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
           QP+  T   +   Y   G  + A+E L+VL
Sbjct: 518 QPNSITYTTLVDVYGKSGRFSDAIECLEVL 547


>gi|145360025|ref|NP_179305.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122223754|sp|Q0WPZ6.1|PP158_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g17140
 gi|110737729|dbj|BAF00803.1| hypothetical protein [Arabidopsis thaliana]
 gi|330251496|gb|AEC06590.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 874

 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 89/406 (21%), Positives = 172/406 (42%), Gaps = 26/406 (6%)

Query: 285 ALPVMKVLRWSFSD----------VIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGF 334
           A P  +++R  F +          ++ +C + +       L   M   G+ P ++T++  
Sbjct: 94  AFPQFQLVRSRFPENKPSVYLYNLLLESCIKERRVEFVSWLYKDMVLCGIAPQTYTFNLL 153

Query: 335 IRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR--- 391
           IRA+     +    E+   M +   KP + T   L     KA   D    LL+ +     
Sbjct: 154 IRALCDSSCVDAARELFDEMPEKGCKPNEFTFGILVRGYCKAGLTDKGLELLNAMESFGV 213

Query: 392 CTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGN 450
             N   ++  +++     + + + K+  KMR++ L PDI T+         ++A  +EG 
Sbjct: 214 LPNKVIYNTIVSSFCREGRNDDSEKMVEKMREEGLVPDIVTFN------SRISALCKEGK 267

Query: 451 MFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPL 507
           +   +D+++  + +E+D      + + I+   +LK     G++ +   L +   ++    
Sbjct: 268 V---LDASRIFSDMELDEYLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFESIRENDDLA 324

Query: 508 GTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALV 567
              +YN  L  LV   +   A  + KQM   GI P+  +YNI++D    +     A  +V
Sbjct: 325 SLQSYNIWLQGLVRHGKFIEAETVLKQMTDKGIGPSIYSYNILMDGLCKLGMLSDAKTIV 384

Query: 568 SMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEK 627
            +M R+G  P  +TY  L+      G  D A +LL  +       +    N +L    + 
Sbjct: 385 GLMKRNGVCPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWKM 444

Query: 628 GRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           GRI   E ++ +M++     D  TC+ +  G    G  + A+E ++
Sbjct: 445 GRISEAEELLRKMNEKGYGLDTVTCNIIVDGLCGSGELDKAIEIVK 490



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 76/367 (20%), Positives = 155/367 (42%), Gaps = 26/367 (7%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           AE ++ QM   G+ PS ++Y+  +  +     L +   ++ +M++N + P   T   L  
Sbjct: 345 AETVLKQMTDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVCPDAVTYGCLLH 404

Query: 372 ECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRP 427
                 ++D A++LL ++ R     N    +  L +   M +   A ++  KM +K    
Sbjct: 405 GYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWKMGRISEAEELLRKMNEKGYGL 464

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL 487
           D  T  ++      V+     G +   ++  K +  +    A  N+ +S+I + +   +L
Sbjct: 465 DTVTCNII------VDGLCGSGELDKAIEIVKGMR-VHGSAALGNLGNSYIGLVD--DSL 515

Query: 488 GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATY 547
                + +LI             TY+T+L+ L +A     A  +F +M    + P++  Y
Sbjct: 516 IENNCLPDLI-------------TYSTLLNGLCKAGRFAEAKNLFAEMMGEKLQPDSVAY 562

Query: 548 NIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSL 607
           NI I          SA  ++  M + G +    TY +LI  L       E   L+D +  
Sbjct: 563 NIFIHHFCKQGKISSAFRVLKDMEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEMKE 622

Query: 608 EGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNS 667
           +GI  ++  YNT ++  CE  +++    ++++M Q  + P+  +  ++   +      + 
Sbjct: 623 KGISPNICTYNTAIQYLCEGEKVEDATNLLDEMMQKNIAPNVFSFKYLIEAFCKVPDFDM 682

Query: 668 AMEALQV 674
           A E  + 
Sbjct: 683 AQEVFET 689



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 86/441 (19%), Positives = 173/441 (39%), Gaps = 66/441 (14%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYD----GFIRAIVSDRGLRNGME 349
           ++F+ +I A   +     A +L  +M   G +P+  T+     G+ +A ++D+GL    E
Sbjct: 148 YTFNLLIRALCDSSCVDAARELFDEMPEKGCKPNEFTFGILVRGYCKAGLTDKGL----E 203

Query: 350 VLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACD 406
           +L  M+   + P      T+     +    D +E +++++       +   F++ ++A  
Sbjct: 204 LLNAMESFGVLPNKVIYNTIVSSFCREGRNDDSEKMVEKMREEGLVPDIVTFNSRISALC 263

Query: 407 TMDKPERAIKIFAKMRQK-----LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI 461
              K   A +IF+ M         RP+  TY L+   F  V    +   +F  +     +
Sbjct: 264 KEGKVLDASRIFSDMELDEYLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFESIRENDDL 323

Query: 462 NAIEM--DMARNNIQHSH-ISMKNLLKALGAEGMIRELIQY------------FCDSKTP 506
            +++      +  ++H   I  + +LK +  +G+   +  Y              D+KT 
Sbjct: 324 ASLQSYNIWLQGLVRHGKFIEAETVLKQMTDKGIGPSIYSYNILMDGLCKLGMLSDAKTI 383

Query: 507 LG----------TPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSI 556
           +G            TY  +LH      +   A  + ++M      PNA T NI++     
Sbjct: 384 VGLMKRNGVCPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWK 443

Query: 557 IRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEG------- 609
           +     A  L+  M   G+   T+T   ++  L   G+ D+A+ ++  + + G       
Sbjct: 444 MGRISEAEELLRKMNEKGYGLDTVTCNIIVDGLCGSGELDKAIEIVKGMRVHGSAALGNL 503

Query: 610 -----------------IPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTC 652
                            +P D++ Y+T+L   C+ GR    + +  +M   K+QPD    
Sbjct: 504 GNSYIGLVDDSLIENNCLP-DLITYSTLLNGLCKAGRFAEAKNLFAEMMGEKLQPDSVAY 562

Query: 653 HFVFSGYVNCGFHNSAMEALQ 673
           +     +   G  +SA   L+
Sbjct: 563 NIFIHHFCKQGKISSAFRVLK 583



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 114/558 (20%), Positives = 213/558 (38%), Gaps = 70/558 (12%)

Query: 121 NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLC 180
           N+  Y LM++  CK G LE+A  L   + E   +   L  YN +L    +    + A   
Sbjct: 290 NSITYNLMLKGFCKVGLLEDAKTLFESIRENDDLAS-LQSYNIWLQGLVRHGKFIEAETV 348

Query: 181 LDLMDSRMVGKNEVTYTELL----KLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWS 236
           L  M  + +G +  +Y  L+    KL +     + V  +  + +   +++   L   +  
Sbjct: 349 LKQMTDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVCPDAVTYGCL---LHG 405

Query: 237 FTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSF 296
           +  +  + +A   LQ M                  +R+         N LP      ++ 
Sbjct: 406 YCSVGKVDAAKSLLQEM------------------MRN---------NCLPNA----YTC 434

Query: 297 SDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQ 356
           + ++H+  +      AE+L+ +M   G    + T +  +  +     L   +E++K M+ 
Sbjct: 435 NILLHSLWKMGRISEAEELLRKMNEKGYGLDTVTCNIIVDGLCGSGELDKAIEIVKGMRV 494

Query: 357 NNLKPQDSTIATLSVECSKALELDLAE--ALLDQISRCTNPKPFSAFLAACDTMDKPERA 414
           +      + +  L       ++  L E   L D I+       +S  L       +   A
Sbjct: 495 HG----SAALGNLGNSYIGLVDDSLIENNCLPDLIT-------YSTLLNGLCKAGRFAEA 543

Query: 415 IKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNI 473
             +FA+M  +KL+PD   Y +    F       ++G    ++ SA R+     DM +   
Sbjct: 544 KNLFAEMMGEKLQPDSVAYNIFIHHF------CKQG----KISSAFRVLK---DMEKKGC 590

Query: 474 QHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAME 530
             S  +  +L+  LG +  I E+     + K    +P   TYNT +  L E ++   A  
Sbjct: 591 HKSLETYNSLILGLGIKNQIFEIHGLMDEMKEKGISPNICTYNTAIQYLCEGEKVEDATN 650

Query: 531 IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590
           +  +M    I PN  ++  +I+    +  F  A  +    V      + + Y+ +   LL
Sbjct: 651 LLDEMMQKNIAPNVFSFKYLIEAFCKVPDFDMAQEVFETAVSICGQKEGL-YSLMFNELL 709

Query: 591 DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650
             G   +A  LL+ V   G      LY  +++  C+K  ++V   I+ +M       DP+
Sbjct: 710 AAGQLLKATELLEAVLDRGFELGTFLYKDLVESLCKKDELEVASGILHKMIDRGYGFDPA 769

Query: 651 TCHFVFSGYVNCGFHNSA 668
               V  G    G    A
Sbjct: 770 ALMPVIDGLGKMGNKKEA 787



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 104/477 (21%), Positives = 188/477 (39%), Gaps = 47/477 (9%)

Query: 111 RMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFL-GACA 169
           + M +K IG +   Y ++M  LCK G L +A  ++  + +R G+ P    Y   L G C+
Sbjct: 350 KQMTDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLM-KRNGVCPDAVTYGCLLHGYCS 408

Query: 170 KLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQ-KNLSAVHEIWEDYI-KHYSLSI 227
                   +L  ++M +  +  N  T   LL  ++W+   +S   E+      K Y L  
Sbjct: 409 VGKVDAAKSLLQEMMRNNCL-PNAYTCNILLH-SLWKMGRISEAEELLRKMNEKGYGLDT 466

Query: 228 FSLRKFVWSFTRLRDLKSAYETLQHM-----VALAMMGKLYINRTSEGRLRSSRLDIPIP 282
            +    V       +L  A E ++ M      AL  +G  YI    +  + +        
Sbjct: 467 VTCNIIVDGLCGSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLVDDSLIEN-------- 518

Query: 283 LNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDR 342
            N LP +     ++S +++   +      A+ L  +M    LQP S  Y+ FI       
Sbjct: 519 -NCLPDL----ITYSTLLNGLCKAGRFAEAKNLFAEMMGEKLQPDSVAYNIFIHHFCKQG 573

Query: 343 GLRNGMEVLKIMQQN----NLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPF 398
            + +   VLK M++     +L+  +S I  L ++ ++  E+     L+D++         
Sbjct: 574 KISSAFRVLKDMEKKGCHKSLETYNSLILGLGIK-NQIFEI---HGLMDEMKEKGISPNI 629

Query: 399 SAFLAACDTM---DKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQ 454
             +  A   +   +K E A  +  +M QK + P++ +++ L   F  V            
Sbjct: 630 CTYNTAIQYLCEGEKVEDATNLLDEMMQKNIAPNVFSFKYLIEAFCKV----------PD 679

Query: 455 VDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNT 514
            D A+ +    + +     +  +  M N L A G      EL++   D    LGT  Y  
Sbjct: 680 FDMAQEVFETAVSICGQK-EGLYSLMFNELLAAGQLLKATELLEAVLDRGFELGTFLYKD 738

Query: 515 VLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           ++ SL +  E   A  I  +M   G   + A    +ID    +   K A++    M+
Sbjct: 739 LVESLCKKDELEVASGILHKMIDRGYGFDPAALMPVIDGLGKMGNKKEANSFADKMM 795



 Score = 43.9 bits (102), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 39/186 (20%), Positives = 75/186 (40%), Gaps = 18/186 (9%)

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           YNT++ S      +  + ++ ++M+  G+ P+  T+N  I           AS + S M 
Sbjct: 220 YNTIVSSFCREGRNDDSEKMVEKMREEGLVPDIVTFNSRISALCKEGKVLDASRIFSDME 279

Query: 572 RDGFY----PQTMTYTALIKILLDYGDFDEALNLL-------DLVSLEGIPHDVLLYNTI 620
            D +     P ++TY  ++K     G  ++A  L        DL SL+        YN  
Sbjct: 280 LDEYLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFESIRENDDLASLQS-------YNIW 332

Query: 621 LKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRML 680
           L+     G+    E +++QM    + P   + + +  G    G  + A   + ++    +
Sbjct: 333 LQGLVRHGKFIEAETVLKQMTDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGV 392

Query: 681 CEEVST 686
           C +  T
Sbjct: 393 CPDAVT 398


>gi|224071479|ref|XP_002303480.1| predicted protein [Populus trichocarpa]
 gi|222840912|gb|EEE78459.1| predicted protein [Populus trichocarpa]
          Length = 836

 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 116/561 (20%), Positives = 225/561 (40%), Gaps = 40/561 (7%)

Query: 110 WRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERY---GIYPILPVYNSFLG 166
           +  ME+  +  N   Y  ++  LCK G L+EA    Y   E+     + P L  Y+ F+ 
Sbjct: 279 FSKMEKLGVAPNVVTYNNIIHGLCKSGRLDEA----YRFKEKMVKEKVSPSLITYSVFIN 334

Query: 167 ACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYSL 225
              KL  +  AN  L  M       NEV Y  L+       N+S   +I +D + K  S 
Sbjct: 335 GLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDGYCKMGNISEALKIRDDMLSKGISP 394

Query: 226 SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRS-----SRLDIP 280
           +  +L   +  F +   +  A   L+ M+       L IN+ S   + +      R    
Sbjct: 395 NSVTLNSLIQGFCKSDQIGQAENVLEEMIGRG----LPINQGSFSMVINWLCLKFRFVTA 450

Query: 281 IPLNALPVMKVLRWS---FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRA 337
           +      +++ LR +    + ++    +    G A +L  ++   G  P+  T +  I  
Sbjct: 451 LHFIREMLLRNLRPNDGLLTTLVSGLCKAGKQGEAVELWCRLLGKGFVPNIVTSNALIHG 510

Query: 338 IVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPK 396
           +     ++  +++L+ M +  L     T  TL   C K  ++     L ++ + +   P 
Sbjct: 511 LCKAGNMQETLKLLRDMLERGLVFDRITYNTLISGCCKEGKVKEGFELKEEMVKKGIQPD 570

Query: 397 --PFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFS 453
              F+  L      DK + A +++ + ++    P++ TY ++   +   N   E  N+ +
Sbjct: 571 IYTFNLLLHGLCNADKIDEASRLWHECKKNGYVPNVYTYGVMIDGYCKANKVEEGENLLN 630

Query: 454 QVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTP---LGTP 510
           ++ S K             ++ + +   +L++A    G +    +   D K+    L   
Sbjct: 631 ELVSKK-------------LELNSVVYNSLIRAYCINGNMNAAFRLRDDMKSRGVLLSCA 677

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TY++++H L        A  +  +M+  G+ PN   Y  +I   S +      + ++  M
Sbjct: 678 TYSSLMHGLCNIGLVDDAKHLLDEMRKEGLLPNVVCYTTIIGGYSKLGQMNKVNIVLQEM 737

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
                +P   TYT +I      G   EA  LL+ ++ +GI  D + YN      C++G++
Sbjct: 738 SSHNIHPNKFTYTIMIDGFCKLGKTKEAAKLLNEMTEKGILPDAVTYNAFTNGLCKEGKV 797

Query: 631 DVIEFIIEQMHQNKVQPDPST 651
           +    + ++M    V  D  T
Sbjct: 798 EEAFKVCDEMSSGAVCLDEIT 818



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 124/636 (19%), Positives = 237/636 (37%), Gaps = 110/636 (17%)

Query: 105 FVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYF--LGERYGIYPILPVYN 162
           F  + + ++ +K +  + K    ++ +L K   L+++  +  F  LG   GI P + +++
Sbjct: 204 FAADVFSLLAKKGLFPSLKTCTFLLSSLVKANELKKSYEVYDFICLG---GIIPDVHLFS 260

Query: 163 SFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH 222
           + + A  K H    A      M+   V  N VTY  ++        L   +   E  +K 
Sbjct: 261 TMINAFCKGHREDDAIGLFSKMEKLGVAPNVVTYNNIIHGLCKSGRLDEAYRFKEKMVKE 320

Query: 223 -YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMM-----------GKLYINRTSEG 270
             S S+ +   F+    +L  +  A   L+ M  L  +           G   +   SE 
Sbjct: 321 KVSPSLITYSVFINGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDGYCKMGNISEA 380

Query: 271 -RLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSH 329
            ++R   L   I  N++        + + +I    ++   G AE ++ +M   GL  +  
Sbjct: 381 LKIRDDMLSKGISPNSV--------TLNSLIQGFCKSDQIGQAENVLEEMIGRGLPINQG 432

Query: 330 TYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI 389
           ++   I  +         +  ++ M   NL+P D  + TL     KA             
Sbjct: 433 SFSMVINWLCLKFRFVTALHFIREMLLRNLRPNDGLLTTLVSGLCKA------------- 479

Query: 390 SRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEE 448
                               K   A++++ ++  K   P+I T   L      ++   + 
Sbjct: 480 -------------------GKQGEAVELWCRLLGKGFVPNIVTSNAL------IHGLCKA 514

Query: 449 GNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKT 505
           GNM   +   +       DM    +    I+   L+     EG ++E   L +       
Sbjct: 515 GNMQETLKLLR-------DMLERGLVFDRITYNTLISGCCKEGKVKEGFELKEEMVKKGI 567

Query: 506 PLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC-C---------- 554
                T+N +LH L  A +   A  ++ + K  G  PN  TY +MID  C          
Sbjct: 568 QPDIYTFNLLLHGLCNADKIDEASRLWHECKKNGYVPNVYTYGVMIDGYCKANKVEEGEN 627

Query: 555 ------------------SIIRCF------KSASALVSMMVRDGFYPQTMTYTALIKILL 590
                             S+IR +       +A  L   M   G      TY++L+  L 
Sbjct: 628 LLNELVSKKLELNSVVYNSLIRAYCINGNMNAAFRLRDDMKSRGVLLSCATYSSLMHGLC 687

Query: 591 DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650
           + G  D+A +LLD +  EG+  +V+ Y TI+    + G+++ +  ++++M  + + P+  
Sbjct: 688 NIGLVDDAKHLLDEMRKEGLLPNVVCYTTIIGGYSKLGQMNKVNIVLQEMSSHNIHPNKF 747

Query: 651 TCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           T   +  G+   G    A + L  ++ + +  +  T
Sbjct: 748 TYTIMIDGFCKLGKTKEAAKLLNEMTEKGILPDAVT 783



 Score = 41.2 bits (95), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 1/88 (1%)

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
           M    I  N   Y +M+   CK G  +EA+ L+  + E+ GI P    YN+F     K  
Sbjct: 737 MSSHNIHPNKFTYTIMIDGFCKLGKTKEAAKLLNEMTEK-GILPDAVTYNAFTNGLCKEG 795

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELL 200
            +  A    D M S  V  +E+TYT L+
Sbjct: 796 KVEEAFKVCDEMSSGAVCLDEITYTTLI 823


>gi|357485117|ref|XP_003612846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355514181|gb|AES95804.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 892

 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 82/313 (26%), Positives = 135/313 (43%), Gaps = 21/313 (6%)

Query: 401 FLAACDTMDKPERAIKIFAKMRQKL--RPDIRTYELLFSLFGNVNAPYEEGNMFSQVD-- 456
           FL  C   D     +++  ++  K   RP+I TY ++ + F           +   VD  
Sbjct: 176 FLLKCLVEDNRVDGVRLLFEVLIKFGPRPNIHTYTIMMNFFCR--------GVGCSVDIR 227

Query: 457 -SAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTV 515
            +++ +  I M     N+      +K L K +G  G+   LIQ  C    PL    +N V
Sbjct: 228 RASEILGKIYMSGETPNVVTYGTYIKGLCK-VGLFGVAWRLIQNLCRKNQPLNNHCFNAV 286

Query: 516 LHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGF 575
           ++ L +      A E+FK+MK  GI P+  +Y+I+ID          AS +   M   G 
Sbjct: 287 IYGLCQGGILDEASEVFKEMKNSGILPDVYSYSILIDGFCRKGRVDQASEVFKEMRNSGI 346

Query: 576 YPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEF 635
            P   +Y+ LI      G  D+AL + + +   GI  DV  Y+ ++   C KG +D    
Sbjct: 347 LPNIYSYSILIDGFCKEGRVDKALEVFEEMKNSGILPDVYSYSILIDGFCRKGDMDSAIK 406

Query: 636 IIEQMHQNKVQPDP-STCHFVFSGYVNCGFHNSAME--ALQVLSM---RMLCEEVSTLEE 689
             E+M  N   P   + C  +   Y +  F N+  E   +Q L M    + C  + ++  
Sbjct: 407 FWEEMTSNNFSPSAFNYCSLIKGYYKSKQFANALKEFRIMQKLGMWPDTIACNHILSIYC 466

Query: 690 KRSDF-EDLILAE 701
           ++ DF + L L+E
Sbjct: 467 RKPDFNKALALSE 479



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 98/483 (20%), Positives = 184/483 (38%), Gaps = 73/483 (15%)

Query: 227 IFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLY-INRTSEGRLRSSRLDIPIPLNA 285
           ++S    +  F R   +  A E  + M    ++  +Y  +   +G  +  R+D      A
Sbjct: 315 VYSYSILIDGFCRKGRVDQASEVFKEMRNSGILPNIYSYSILIDGFCKEGRVD-----KA 369

Query: 286 LPVMKVLR--------WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRA 337
           L V + ++        +S+S +I    R  +   A +   +M S    PS+  Y   I+ 
Sbjct: 370 LEVFEEMKNSGILPDVYSYSILIDGFCRKGDMDSAIKFWEEMTSNNFSPSAFNYCSLIKG 429

Query: 338 IVSDRGLRNGMEVLKIMQQNNLKPQDSTIA---TLSVECSKALELDLAEALLDQISRCT- 393
               +   N ++  +IMQ+  + P   TIA    LS+ C K  + + A AL ++      
Sbjct: 430 YYKSKQFANALKEFRIMQKLGMWPD--TIACNHILSIYCRKP-DFNKALALSEKFQENGV 486

Query: 394 --NPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGN 450
             NP  ++ F+        PE+A+++   M ++ + PD+  Y  L S F           
Sbjct: 487 HFNPYSYNEFIHRICRGSVPEKALQLLPVMLKRNVLPDVVNYSTLISCF----------- 535

Query: 451 MFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP 510
                  AKR+N+ +  M              L   +   G+                  
Sbjct: 536 -------AKRLNSEKAVM--------------LFIKMTKVGIT-------------FNVK 561

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TY  +++  +   +   A  +FK MK   + P+   Y  ++           A AL   M
Sbjct: 562 TYTILINLFISDCKMDVAYRLFKGMKESRVYPDQIAYTSLVAGFCNTGEMTRARALFDEM 621

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
            R+G  P  +TYT  I   L     ++A  L + +   G+  D +LY  ++   C  G +
Sbjct: 622 SREGCSPNVVTYTCFINEYLKLNKNNQAHKLYEKMKERGVYPDQILYTMLIAAFCNTGEM 681

Query: 631 DVIEFIIEQMHQ-NKVQPDPSTCHFVFSGYVNCGFHNSA---MEALQVLSMRMLCEEVST 686
           +  E + ++M Q  +  P+      + + Y+     + A    E ++   +  LC    +
Sbjct: 682 NRAEALFDEMKQEGRCTPNVVMYTCLINSYIKLNKRDQAEKLYEEMRAKGLSRLCSSEGS 741

Query: 687 LEE 689
           + E
Sbjct: 742 VSE 744



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 114/549 (20%), Positives = 213/549 (38%), Gaps = 104/549 (18%)

Query: 110 WRMME---EKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLG 166
           WR+++    K   LNN C+  ++  LC+GG L+EAS +   + +  GI P +  Y+  + 
Sbjct: 265 WRLIQNLCRKNQPLNNHCFNAVIYGLCQGGILDEASEVFKEM-KNSGILPDVYSYSILID 323

Query: 167 ACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSL- 225
              +   +  A+     M +  +  N  +Y+ L+     +  +    E++E+ +K+  + 
Sbjct: 324 GFCRKGRVDQASEVFKEMRNSGILPNIYSYSILIDGFCKEGRVDKALEVFEE-MKNSGIL 382

Query: 226 -SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTS--EGRLRSSRLDIPIP 282
             ++S    +  F R  D+ SA +  + M +       + N  S  +G  +S +      
Sbjct: 383 PDVYSYSILIDGFCRKGDMDSAIKFWEEMTSNNFSPSAF-NYCSLIKGYYKSKQF----- 436

Query: 283 LNALPVMKVLR--WSFSDVIHACG-------RTQNSGLAEQLMLQMQSLGLQPSSHTYDG 333
            NAL   ++++    + D I AC        R  +   A  L  + Q  G+  + ++Y+ 
Sbjct: 437 ANALKEFRIMQKLGMWPDTI-ACNHILSIYCRKPDFNKALALSEKFQENGVHFNPYSYNE 495

Query: 334 FIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT 393
           FI  I         +++L +M + N+ P     +TL + C        A+ L        
Sbjct: 496 FIHRICRGSVPEKALQLLPVMLKRNVLPDVVNYSTL-ISC-------FAKRL-------- 539

Query: 394 NPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMF 452
                             E+A+ +F KM +  +  +++TY +L +LF             
Sbjct: 540 ----------------NSEKAVMLFIKMTKVGITFNVKTYTILINLF------------- 570

Query: 453 SQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTY 512
                   I+  +MD+A             L K +    +  + I Y             
Sbjct: 571 --------ISDCKMDVAY-----------RLFKGMKESRVYPDQIAY------------- 598

Query: 513 NTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVR 572
            +++       E  RA  +F +M   G  PN  TY   I+    +     A  L   M  
Sbjct: 599 TSLVAGFCNTGEMTRARALFDEMSREGCSPNVVTYTCFINEYLKLNKNNQAHKLYEKMKE 658

Query: 573 DGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEG-IPHDVLLYNTILKKACEKGRID 631
            G YP  + YT LI    + G+ + A  L D +  EG    +V++Y  ++    +  + D
Sbjct: 659 RGVYPDQILYTMLIAAFCNTGEMNRAEALFDEMKQEGRCTPNVVMYTCLINSYIKLNKRD 718

Query: 632 VIEFIIEQM 640
             E + E+M
Sbjct: 719 QAEKLYEEM 727



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/209 (22%), Positives = 87/209 (41%), Gaps = 7/209 (3%)

Query: 472 NIQHSHISMKNLLKALGAEGMIRELIQYFC---DSKTPLGTPTYNTVLHSLVEAQESHRA 528
           +++ S++    L+K   +  M+      F    D    L   + N +L  LVE       
Sbjct: 131 DVEKSNVVFDMLIKVFASNSMLEHANYVFVRAKDDGIELNIMSCNFLLKCLVEDNRVDGV 190

Query: 529 MEIFKQMKTCGIPPNAATYNIMID-CCSIIRC---FKSASALVSMMVRDGFYPQTMTYTA 584
             +F+ +   G  PN  TY IM++  C  + C    + AS ++  +   G  P  +TY  
Sbjct: 191 RLLFEVLIKFGPRPNIHTYTIMMNFFCRGVGCSVDIRRASEILGKIYMSGETPNVVTYGT 250

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
            IK L   G F  A  L+  +  +  P +   +N ++   C+ G +D    + ++M  + 
Sbjct: 251 YIKGLCKVGLFGVAWRLIQNLCRKNQPLNNHCFNAVIYGLCQGGILDEASEVFKEMKNSG 310

Query: 645 VQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           + PD  +   +  G+   G  + A E  +
Sbjct: 311 ILPDVYSYSILIDGFCRKGRVDQASEVFK 339



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 82/371 (22%), Positives = 154/371 (41%), Gaps = 28/371 (7%)

Query: 108 ETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGA 167
           E ++ M    I  N   Y +++   CK G +++A  +   + +  GI P +  Y+  +  
Sbjct: 336 EVFKEMRNSGILPNIYSYSILIDGFCKEGRVDKALEVFEEM-KNSGILPDVYSYSILIDG 394

Query: 168 CAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLS-AVHE--------IWED 218
             +   M  A    + M S     +   Y  L+K     K  + A+ E        +W D
Sbjct: 395 FCRKGDMDSAIKFWEEMTSNNFSPSAFNYCSLIKGYYKSKQFANALKEFRIMQKLGMWPD 454

Query: 219 YIK-HYSLSIFSLRKFVWSFTRLRDLKSAY-ETLQHMVALAMMGKLYINRTSEGRLRSSR 276
            I  ++ LSI+  +     F +   L   + E   H    +     +I+R   G +    
Sbjct: 455 TIACNHILSIYCRKP---DFNKALALSEKFQENGVHFNPYSY--NEFIHRICRGSVPEKA 509

Query: 277 LDI-PIPL--NALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDG 333
           L + P+ L  N LP +     ++S +I    +  NS  A  L ++M  +G+  +  TY  
Sbjct: 510 LQLLPVMLKRNVLPDVV----NYSTLISCFAKRLNSEKAVMLFIKMTKVGITFNVKTYTI 565

Query: 334 FIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR-- 391
            I   +SD  +     + K M+++ + P      +L        E+  A AL D++SR  
Sbjct: 566 LINLFISDCKMDVAYRLFKGMKESRVYPDQIAYTSLVAGFCNTGEMTRARALFDEMSREG 625

Query: 392 CT-NPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEG 449
           C+ N   ++ F+     ++K  +A K++ KM+++ + PD   Y +L + F N        
Sbjct: 626 CSPNVVTYTCFINEYLKLNKNNQAHKLYEKMKERGVYPDQILYTMLIAAFCNTGEMNRAE 685

Query: 450 NMFSQVDSAKR 460
            +F ++    R
Sbjct: 686 ALFDEMKQEGR 696



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 72/391 (18%), Positives = 146/391 (37%), Gaps = 22/391 (5%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTY----DGFIRAIVSDRGLRNGMEVL 351
           F+ VI+   +      A ++  +M++ G+ P  ++Y    DGF R    D+      EV 
Sbjct: 283 FNAVIYGLCQGGILDEASEVFKEMKNSGILPDVYSYSILIDGFCRKGRVDQA----SEVF 338

Query: 352 KIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRC---TNPKPFSAFLAACDTM 408
           K M+ + + P   + + L     K   +D A  + +++       +   +S  +      
Sbjct: 339 KEMRNSGILPNIYSYSILIDGFCKEGRVDKALEVFEEMKNSGILPDVYSYSILIDGFCRK 398

Query: 409 DKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMD 467
              + AIK + +M      P    Y    SL        +  N   +    +++      
Sbjct: 399 GDMDSAIKFWEEMTSNNFSPSAFNY---CSLIKGYYKSKQFANALKEFRIMQKLGMWPDT 455

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHR 527
           +A N+I   +    +  KAL        L + F ++       +YN  +H +       +
Sbjct: 456 IACNHILSIYCRKPDFNKALA-------LSEKFQENGVHFNPYSYNEFIHRICRGSVPEK 508

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A+++   M    + P+   Y+ +I C +     + A  L   M + G      TYT LI 
Sbjct: 509 ALQLLPVMLKRNVLPDVVNYSTLISCFAKRLNSEKAVMLFIKMTKVGITFNVKTYTILIN 568

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
           + +     D A  L   +    +  D + Y +++   C  G +     + ++M +    P
Sbjct: 569 LFISDCKMDVAYRLFKGMKESRVYPDQIAYTSLVAGFCNTGEMTRARALFDEMSREGCSP 628

Query: 648 DPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678
           +  T     + Y+    +N A +  + +  R
Sbjct: 629 NVVTYTCFINEYLKLNKNNQAHKLYEKMKER 659


>gi|224132422|ref|XP_002328265.1| predicted protein [Populus trichocarpa]
 gi|222837780|gb|EEE76145.1| predicted protein [Populus trichocarpa]
          Length = 742

 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 94/409 (22%), Positives = 170/409 (41%), Gaps = 32/409 (7%)

Query: 285 ALPVMKVLRWSFSD----------VIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGF 334
           A+   K LR+ F +          ++ +C +         L   M + G+ P ++T++  
Sbjct: 3   AISQFKSLRFRFPENPPSIYLYNVLLRSCTKEGRVDCVSWLCKDMVASGVSPETYTFNVL 62

Query: 335 IRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL------SVECSKALELDLAEALLDQ 388
           I  +     L +  E+   M +   +P + +   L      +   SK LEL L E  + +
Sbjct: 63  IGLLCDSGCLDDARELFDKMPEKGCEPNEYSFGILVRGYCRAGFTSKGLEL-LGE--MRR 119

Query: 389 ISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYE 447
           +    N   ++  +++     K + A K+  +MR+  L PD+ T+    S   +     E
Sbjct: 120 LGFSPNKVVYNTLISSFCKEGKTDDAEKLVDEMRKDGLSPDVVTFNARISALCSSGKVLE 179

Query: 448 EGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSK 504
              +F           +++D      Q + I+   +L     EGM+ E   L +    S+
Sbjct: 180 ASRIFRD---------MQIDEVLGLPQPNIITYNLMLGGFCKEGMLEEARALFEKMKVSE 230

Query: 505 TPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSAS 564
             +   +YN  L  LV   +   A  + K+M   G+ PN  +YNI++D          A 
Sbjct: 231 NLMNRESYNIWLLGLVRIGKLLEAQLVLKEMVDMGMEPNVYSYNIVMDGLCKNGVLFDAR 290

Query: 565 ALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKA 624
            L+ +M   G  P T+TYT L+      G   EA N+L  +  +G   +    N +L   
Sbjct: 291 MLMRLMTSSGVLPDTVTYTTLLHGYCHTGKVSEANNVLREMMRDGCSPNNYTCNILLYSL 350

Query: 625 CEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
            ++GRI   E ++++M++     D  TC+ V  G  N G  + A+E + 
Sbjct: 351 WKEGRISEAEELLQKMNEKGYVIDTVTCNIVIDGLCNNGKLDKAIEIVN 399



 Score = 65.9 bits (159), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 119/576 (20%), Positives = 214/576 (37%), Gaps = 82/576 (14%)

Query: 108 ETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGE--RYGIYPILPVYNSFL 165
           E +  M EK    N   + ++++  C+ G+    S  +  LGE  R G  P   VYN+ +
Sbjct: 77  ELFDKMPEKGCEPNEYSFGILVRGYCRAGF---TSKGLELLGEMRRLGFSPNKVVYNTLI 133

Query: 166 GACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSL 225
            +  K      A   +D M    +  + VT+   +        +     I+ D      L
Sbjct: 134 SSFCKEGKTDDAEKLVDEMRKDGLSPDVVTFNARISALCSSGKVLEASRIFRDMQIDEVL 193

Query: 226 -----SIFSLRKFVWSFTRLRDLKSAYETLQHM-VALAMMGKLYINRTSEGRLRSSRL-D 278
                +I +    +  F +   L+ A    + M V+  +M +   N    G +R  +L +
Sbjct: 194 GLPQPNIITYNLMLGGFCKEGMLEEARALFEKMKVSENLMNRESYNIWLLGLVRIGKLLE 253

Query: 279 IPIPLNALPVMKVLRWSFSDVIHACGRTQNSGL--AEQLMLQMQSLGLQPSSHTYDGFIR 336
             + L  +  M +    +S  I   G  +N  L  A  LM  M S G+ P + TY   + 
Sbjct: 254 AQLVLKEMVDMGMEPNVYSYNIVMDGLCKNGVLFDARMLMRLMTSSGVLPDTVTYTTLLH 313

Query: 337 AIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPK 396
                  +     VL+ M ++   P + T   L     K   +  AE LL ++    N K
Sbjct: 314 GYCHTGKVSEANNVLREMMRDGCSPNNYTCNILLYSLWKEGRISEAEELLQKM----NEK 369

Query: 397 PFSAFLAACDTM-------DKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEG 449
            +      C+ +        K ++AI+I                        VN  +  G
Sbjct: 370 GYVIDTVTCNIVIDGLCNNGKLDKAIEI------------------------VNGMWTHG 405

Query: 450 NMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGT 509
           +                  A  N+ +S+I + +   +   +  + +LI            
Sbjct: 406 SA-----------------ALGNLGNSYIGLVD--DSDSRKKCMPDLI------------ 434

Query: 510 PTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSM 569
            +Y+T++  L +A     A + F +M    + P++A Y++ I          SA  ++  
Sbjct: 435 -SYSTIISGLCKAGRVGEAKKKFIEMMGKNLQPDSAIYDVFIHSFCKEGKISSAFRVLKD 493

Query: 570 MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
           M + G      TY +LI  L       E   L+D +   G+  DV +YN +L   CE GR
Sbjct: 494 MEKKGCNKTLQTYNSLIMGLGSKNQIFEIYGLIDEMRERGVSPDVSIYNNVLSSLCEGGR 553

Query: 630 IDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVN-CGF 664
           +     ++++M Q  + P+ S+   +   +   C F
Sbjct: 554 VKDAPSVLDEMLQKGISPNISSFSILIKAFCKACDF 589



 Score = 60.5 bits (145), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/220 (22%), Positives = 90/220 (40%), Gaps = 25/220 (11%)

Query: 504 KTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSA 563
           + P     YN +L S  +         + K M   G+ P   T+N++I       C   A
Sbjct: 16  ENPPSIYLYNVLLRSCTKEGRVDCVSWLCKDMVASGVSPETYTFNVLIGLLCDSGCLDDA 75

Query: 564 SALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKK 623
             L   M   G  P   ++  L++     G   + L LL  +   G   + ++YNT++  
Sbjct: 76  RELFDKMPEKGCEPNEYSFGILVRGYCRAGFTSKGLELLGEMRRLGFSPNKVVYNTLISS 135

Query: 624 ACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQV--------- 674
            C++G+ D  E ++++M ++ + PD  T +   S   + G     +EA ++         
Sbjct: 136 FCKEGKTDDAEKLVDEMRKDGLSPDVVTFNARISALCSSG---KVLEASRIFRDMQIDEV 192

Query: 675 ------------LSMRMLCEEVSTLEEKRSDFEDLILAED 702
                       L +   C+E   LEE R+ FE + ++E+
Sbjct: 193 LGLPQPNIITYNLMLGGFCKE-GMLEEARALFEKMKVSEN 231



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 85/442 (19%), Positives = 165/442 (37%), Gaps = 63/442 (14%)

Query: 304 GRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLK--P 361
           G+T +   AE+L+ +M+  GL P   T++  I A+ S   +     + + MQ + +   P
Sbjct: 140 GKTDD---AEKLVDEMRKDGLSPDVVTFNARISALCSSGKVLEASRIFRDMQIDEVLGLP 196

Query: 362 QDSTIA---TLSVECSKALELDLAEALLDQIS---RCTNPKPFSAFLAACDTMDKPERAI 415
           Q + I     L   C + + L+ A AL +++       N + ++ +L     + K   A 
Sbjct: 197 QPNIITYNLMLGGFCKEGM-LEEARALFEKMKVSENLMNRESYNIWLLGLVRIGKLLEAQ 255

Query: 416 KIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNM----------------------F 452
            +  +M    + P++ +Y ++          ++   +                      +
Sbjct: 256 LVLKEMVDMGMEPNVYSYNIVMDGLCKNGVLFDARMLMRLMTSSGVLPDTVTYTTLLHGY 315

Query: 453 SQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMI---RELIQYFCDSKTPLGT 509
                    N +  +M R+    ++ +   LL +L  EG I    EL+Q   +    + T
Sbjct: 316 CHTGKVSEANNVLREMMRDGCSPNNYTCNILLYSLWKEGRISEAEELLQKMNEKGYVIDT 375

Query: 510 PTYNTVLHSLVEAQESHRAMEIFKQMKTCGIP-----------------------PNAAT 546
            T N V+  L    +  +A+EI   M T G                         P+  +
Sbjct: 376 VTCNIVIDGLCNNGKLDKAIEIVNGMWTHGSAALGNLGNSYIGLVDDSDSRKKCMPDLIS 435

Query: 547 YNIMID-CCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLV 605
           Y+ +I   C   R  ++    + MM ++   P +  Y   I      G    A  +L  +
Sbjct: 436 YSTIISGLCKAGRVGEAKKKFIEMMGKN-LQPDSAIYDVFIHSFCKEGKISSAFRVLKDM 494

Query: 606 SLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFH 665
             +G    +  YN+++     K +I  I  +I++M +  V PD S  + V S     G  
Sbjct: 495 EKKGCNKTLQTYNSLIMGLGSKNQIFEIYGLIDEMRERGVSPDVSIYNNVLSSLCEGGRV 554

Query: 666 NSAMEALQVLSMRMLCEEVSTL 687
             A   L  +  + +   +S+ 
Sbjct: 555 KDAPSVLDEMLQKGISPNISSF 576


>gi|242069957|ref|XP_002450255.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
 gi|241936098|gb|EES09243.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
          Length = 924

 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 95/463 (20%), Positives = 187/463 (40%), Gaps = 27/463 (5%)

Query: 224 SLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMM-GKLYINRTSEGRLRSSRLDIPIP 282
           S  + +    +    + +++  A +  Q MV   +    +  N   +G  ++  +D+   
Sbjct: 222 SPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGVKPNNVTYNTIIDGLCKAQEVDMAEG 281

Query: 283 LNALPVMKVLRWS---FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIV 339
           +    V K ++ S   ++ +I    + Q    AE +  QM   G++P   TY+  I  + 
Sbjct: 282 VFQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLC 341

Query: 340 SDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPK-- 396
             + +     V + M    +KP + T   +     KA  +D AE +  Q I +   P   
Sbjct: 342 KAQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNG 401

Query: 397 PFSAFLAACDTMDKPERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQV 455
            ++  +    +  + E  ++   +M    L PD+ TY LL           E  ++F   
Sbjct: 402 TYNCLIHGYLSTGQWEEVVQRIKEMSAHDLEPDVFTYGLLLDYLCKNGKCNEARSLFDS- 460

Query: 456 DSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTY 512
                       M R  I+ S      +L   G +G + E   L+     +        +
Sbjct: 461 ------------MIRKGIKPSVTIYGIMLHGYGKKGALSEMHDLLNLMVANGISPNHRIF 508

Query: 513 NTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVR 572
           NTV+ +  +       M IF +MK  G+ PN  TY  +ID    +     A    + M+ 
Sbjct: 509 NTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALCKLGRVDDAVLQFNQMIN 568

Query: 573 DGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDV 632
           +G  P  + + +L+  L     +++   L   +  +GI  D++ +NT+L   C++GR+  
Sbjct: 569 EGVTPNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQGIRPDIVFFNTVLCNLCKEGRVME 628

Query: 633 IEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
              +I+ M    ++PD  + + +  G+    F +   EA+++L
Sbjct: 629 ARRLIDSMVCMGLKPDVISYNTLIDGHC---FASRMDEAVKLL 668



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 81/181 (44%)

Query: 478 ISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKT 537
           +S   ++     EG + +    F +        TYNT++  L +AQE  RA ++F+QM  
Sbjct: 194 VSYNIVINGFFNEGQVDKAYSLFLEMGVSPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVE 253

Query: 538 CGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDE 597
            G+ PN  TYN +ID     +    A  +   MV  G  P  +TY  +I  L      D 
Sbjct: 254 KGVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGLCKAQAVDR 313

Query: 598 ALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFS 657
           A  +   +   G+  D + YNTI+   C+   ID  E + +QM    V+PD  T   +  
Sbjct: 314 AEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIIID 373

Query: 658 G 658
           G
Sbjct: 374 G 374



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 77/352 (21%), Positives = 152/352 (43%), Gaps = 22/352 (6%)

Query: 308 NSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIA 367
           N G  ++       +G+ P   TY+  I  +   + +    +V + M +  +KP + T  
Sbjct: 205 NEGQVDKAYSLFLEMGVSPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGVKPNNVTYN 264

Query: 368 TLSVECSKALELDLAEALLDQ-ISRCTNPK--PFSAFLAACDTMDKPERAIKIFAKMRQK 424
           T+     KA E+D+AE +  + + +   P    ++  +         +RA  +F +M  +
Sbjct: 265 TIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQMIDR 324

Query: 425 -LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNL 483
            ++PD  TY  +        A  +   +F Q+        I+  +  +N+ ++ I +  L
Sbjct: 325 GVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQM--------IDKGVKPDNLTYT-IIIDGL 375

Query: 484 LKALG---AEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGI 540
            KA     AEG+ +++I    D        TYN ++H  +   +    ++  K+M    +
Sbjct: 376 CKAQSVDRAEGVFQQMI----DKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIKEMSAHDL 431

Query: 541 PPNAATYNIMID-CCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEAL 599
            P+  TY +++D  C   +C   A +L   M+R G  P    Y  ++      G   E  
Sbjct: 432 EPDVFTYGLLLDYLCKNGKC-NEARSLFDSMIRKGIKPSVTIYGIMLHGYGKKGALSEMH 490

Query: 600 NLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
           +LL+L+   GI  +  ++NT++    ++  ID +  I  +M Q  + P+  T
Sbjct: 491 DLLNLMVANGISPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVT 542



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/260 (25%), Positives = 120/260 (46%), Gaps = 13/260 (5%)

Query: 427 PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKA 486
           PD+ +Y ++      +N  + EG    QVD A  +  +EM ++ + + ++ I +  L KA
Sbjct: 191 PDVVSYNIV------INGFFNEG----QVDKAYSL-FLEMGVSPDVVTYNTI-IDGLCKA 238

Query: 487 LGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAAT 546
              +    ++ Q   +        TYNT++  L +AQE   A  +F++M   G+ P+  T
Sbjct: 239 QEVD-RAEDVFQQMVEKGVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVT 297

Query: 547 YNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVS 606
           YN +ID     +    A  +   M+  G  P  +TY  +I  L      D+A  +   + 
Sbjct: 298 YNTIIDGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMI 357

Query: 607 LEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHN 666
            +G+  D L Y  I+   C+   +D  E + +QM    V+P+  T + +  GY++ G   
Sbjct: 358 DKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWE 417

Query: 667 SAMEALQVLSMRMLCEEVST 686
             ++ ++ +S   L  +V T
Sbjct: 418 EVVQRIKEMSAHDLEPDVFT 437



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 82/387 (21%), Positives = 162/387 (41%), Gaps = 42/387 (10%)

Query: 294 WSFSDVI-----HACGRTQNSGLAEQLML-QMQSLGLQPSSHTYDGFIRAIVSDRGLRNG 347
           W   D++          T+  G A  ++L QM  +G +    +Y+  ++ +   R     
Sbjct: 115 WRVDDIVVNQLLKGLCDTKRVGEAMHVLLRQMPEVGCRLGVVSYNTLLKGLCDRRRAEEA 174

Query: 348 MEVLKIMQQNNLKPQDSTIATLSVECSKAL-------ELDLAEALLDQISRCTNPKPFSA 400
            E+L +M    +  QDS+ +   V  +  +       ++D A +L  ++    +   ++ 
Sbjct: 175 RELLHMM----VDGQDSSCSPDVVSYNIVINGFFNEGQVDKAYSLFLEMGVSPDVVTYNT 230

Query: 401 FLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAK 459
            +       + +RA  +F +M +K ++P+  TY  +    G   A         +VD A+
Sbjct: 231 IIDGLCKAQEVDRAEDVFQQMVEKGVKPNNVTYNTIID--GLCKA--------QEVDMAE 280

Query: 460 RINAIEMDMARNNIQHSHISMKNLLKALG-------AEGMIRELIQYFCDSKTPLGTPTY 512
               +   M    ++ S+++   ++  L        AEG+ +++I    D        TY
Sbjct: 281 ---GVFQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQMI----DRGVKPDHVTY 333

Query: 513 NTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVR 572
           NT++  L +AQ   +A  +F+QM   G+ P+  TY I+ID     +    A  +   M+ 
Sbjct: 334 NTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMID 393

Query: 573 DGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDV 632
            G  P   TY  LI   L  G ++E +  +  +S   +  DV  Y  +L   C+ G+ + 
Sbjct: 394 KGVKPNNGTYNCLIHGYLSTGQWEEVVQRIKEMSAHDLEPDVFTYGLLLDYLCKNGKCNE 453

Query: 633 IEFIIEQMHQNKVQPDPSTCHFVFSGY 659
              + + M +  ++P  +    +  GY
Sbjct: 454 ARSLFDSMIRKGIKPSVTIYGIMLHGY 480



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 125/664 (18%), Positives = 258/664 (38%), Gaps = 63/664 (9%)

Query: 32  NKLELSRTLTTTMGLNEESISKATQMQIVDALCRG-ERSRASHLLLNLGHAHHSLGADDF 90
            +++ + +L   MG++ + ++  T   I+D LC+  E  RA  +   +           +
Sbjct: 207 GQVDKAYSLFLEMGVSPDVVTYNT---IIDGLCKAQEVDRAEDVFQQMVEKGVKPNNVTY 263

Query: 91  FHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGE 150
             I++   ++ +       ++ M +K +  +N  Y  ++  LCK   ++ A  +   + +
Sbjct: 264 NTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQMID 323

Query: 151 RYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLS 210
           R G+ P    YN+ +    K  ++  A      M  + V  + +TYT ++      +++ 
Sbjct: 324 R-GVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVD 382

Query: 211 AVHEIWEDYI-KHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA------LAMMGKLY 263
               +++  I K    +  +    +  +      +   + ++ M A      +   G L 
Sbjct: 383 RAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIKEMSAHDLEPDVFTYGLLL 442

Query: 264 INRTSEGRLRSSR--LDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQS 321
                 G+   +R   D  I     P + +    +  ++H  G+         L+  M +
Sbjct: 443 DYLCKNGKCNEARSLFDSMIRKGIKPSVTI----YGIMLHGYGKKGALSEMHDLLNLMVA 498

Query: 322 LGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDL 381
            G+ P+   ++  I A      +   M +   M+Q  L P   T  TL     K   +D 
Sbjct: 499 NGISPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALCKLGRVDD 558

Query: 382 AEALLDQ-ISRCTNPKP--FSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFS 437
           A    +Q I+    P    F++ +    T+DK E+  ++F +M  Q +RPDI  +  +  
Sbjct: 559 AVLQFNQMINEGVTPNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQGIRPDIVFFNTVLC 618

Query: 438 LFGNVNAPYE------------------------EGNMF-SQVDSAKRINAIEMD-MARN 471
                    E                        +G+ F S++D A ++    +D M   
Sbjct: 619 NLCKEGRVMEARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKL----LDGMVSA 674

Query: 472 NIQHSHISMKNLLKALGAEGMI-------RELIQYFCDSKTPLGTPTYNTVLHSLVEAQE 524
            ++ + +S   LL      G I       RE+++      TP G  TYNT+L+ L  +  
Sbjct: 675 GLKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLR---KGVTP-GVETYNTILNGLFRSGR 730

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
              A E++  M       +  TY+I++D      CF  A  +   +         +T+  
Sbjct: 731 FSEARELYVNMIKSRKLWSICTYSIILDGFCKNNCFDEAFKIFQSLCSMDLQLDIITFNI 790

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
           +I  L   G  ++A++L   +   G+   V+ Y  I +   E+G ++ ++ +   M ++ 
Sbjct: 791 MIDGLFKGGRKEDAMDLFAAIPANGLVPSVVTYRLIAENLIEEGSLEELDCLFSVMEKSG 850

Query: 645 VQPD 648
             P+
Sbjct: 851 TAPN 854



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 113/589 (19%), Positives = 211/589 (35%), Gaps = 63/589 (10%)

Query: 136 GYLEEAS-NLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEV 194
           G+  E   +  Y L    G+ P +  YN+ +    K   +  A      M  + V  N V
Sbjct: 202 GFFNEGQVDKAYSLFLEMGVSPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGVKPNNV 261

Query: 195 TYTELLKLAVWQKNLSAVHEIWEDYI-KHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHM 253
           TY  ++      + +     +++  + K    S  +    +    + + +  A    Q M
Sbjct: 262 TYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQM 321

Query: 254 VALAMM-GKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLR---WSFSDVIHACGRTQNS 309
           +   +    +  N   +G  ++  +D    +    + K ++    +++ +I    + Q+ 
Sbjct: 322 IDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSV 381

Query: 310 GLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL 369
             AE +  QM   G++P++ TY+  I   +S       ++ +K M  ++L+P   T   L
Sbjct: 382 DRAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIKEMSAHDLEPDVFTYGLL 441

Query: 370 SVECSKALELDLAEALLDQISR-------------------------------------- 391
                K  + + A +L D + R                                      
Sbjct: 442 LDYLCKNGKCNEARSLFDSMIRKGIKPSVTIYGIMLHGYGKKGALSEMHDLLNLMVANGI 501

Query: 392 CTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGN 450
             N + F+  + A       +  + IF KM+Q+ L P++ TY  L      +    +   
Sbjct: 502 SPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALCKLGRVDDAVL 561

Query: 451 MFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP 510
            F+Q+        I   +  NN+  +  S+   L  +     + EL     +        
Sbjct: 562 QFNQM--------INEGVTPNNVVFN--SLVYGLCTVDKWEKVEELFLEMLNQGIRPDIV 611

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKS----ASAL 566
            +NTVL +L +      A  +   M   G+ P+  +YN +ID      CF S    A  L
Sbjct: 612 FFNTVLCNLCKEGRVMEARRLIDSMVCMGLKPDVISYNTLIDG----HCFASRMDEAVKL 667

Query: 567 VSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE 626
           +  MV  G  P  ++Y  L+      G  D A  L   +  +G+   V  YNTIL     
Sbjct: 668 LDGMVSAGLKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLRKGVTPGVETYNTILNGLFR 727

Query: 627 KGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
            GR      +   M +++      T   +  G+      + A +  Q L
Sbjct: 728 SGRFSEARELYVNMIKSRKLWSICTYSIILDGFCKNNCFDEAFKIFQSL 776



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 95/485 (19%), Positives = 184/485 (37%), Gaps = 59/485 (12%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y L++  LCK G   EA +L   +  R GI P + +Y   L    K  ++   +  L+LM
Sbjct: 438 YGLLLDYLCKNGKCNEARSLFDSM-IRKGIKPSVTIYGIMLHGYGKKGALSEMHDLLNLM 496

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK----HYSLSIFSLRKFVWSFTRL 240
            +  +  N   +  ++    + K  + + E+   +IK      S ++ +    + +  +L
Sbjct: 497 VANGISPNHRIFNTVI--CAYAKR-AMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALCKL 553

Query: 241 RDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVI 300
             +  A      M+             +EG           P N +         F+ ++
Sbjct: 554 GRVDDAVLQFNQMI-------------NEG---------VTPNNVV---------FNSLV 582

Query: 301 HACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLK 360
           +           E+L L+M + G++P    ++  +  +  +  +     ++  M    LK
Sbjct: 583 YGLCTVDKWEKVEELFLEMLNQGIRPDIVFFNTVLCNLCKEGRVMEARRLIDSMVCMGLK 642

Query: 361 PQDSTIATLSVECSKALELDLAEALLD-QISRCTNPK--PFSAFLAACDTMDKPERAIKI 417
           P   +  TL      A  +D A  LLD  +S    P    ++  L       + + A  +
Sbjct: 643 PDVISYNTLIDGHCFASRMDEAVKLLDGMVSAGLKPNIVSYNTLLHGYCKAGRIDNAYCL 702

Query: 418 FAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHS 476
           F +M R+ + P + TY  +      +N  +  G  FS+         + ++M ++    S
Sbjct: 703 FREMLRKGVTPGVETYNTI------LNGLFRSGR-FSEA------RELYVNMIKSRKLWS 749

Query: 477 HISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFK 533
             +   +L          E   + Q  C     L   T+N ++  L +      AM++F 
Sbjct: 750 ICTYSIILDGFCKNNCFDEAFKIFQSLCSMDLQLDIITFNIMIDGLFKGGRKEDAMDLFA 809

Query: 534 QMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYG 593
            +   G+ P+  TY ++ +        +    L S+M + G  P +    ALI+ LLD G
Sbjct: 810 AIPANGLVPSVVTYRLIAENLIEEGSLEELDCLFSVMEKSGTAPNSHMLNALIRKLLDRG 869

Query: 594 DFDEA 598
           +   A
Sbjct: 870 EIPRA 874



 Score = 44.3 bits (103), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 75/168 (44%), Gaps = 10/168 (5%)

Query: 506 PLGTPTYNTVLHSLVEAQ---ESHRAMEIFKQM-KTCG--IPPNAATYNIMIDCCSIIRC 559
           P      N +L  +  A+    S  A+  F +M + C   + P+  TY+I+I C   I  
Sbjct: 40  PASVRALNQLLSVVSRAKCSSSSKLAVSRFNRMLRDCSNKVAPDCCTYSIVIGCFCRIGR 99

Query: 560 FKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALN-LLDLVSLEGIPHDVLLYN 618
            +   A   ++++ G+    +    L+K L D     EA++ LL  +   G    V+ YN
Sbjct: 100 LELGFAAFGLILKTGWRVDDIVVNQLLKGLCDTKRVGEAMHVLLRQMPEVGCRLGVVSYN 159

Query: 619 TILKKACEKGRIDVIEFIIEQM---HQNKVQPDPSTCHFVFSGYVNCG 663
           T+LK  C++ R +    ++  M     +   PD  + + V +G+ N G
Sbjct: 160 TLLKGLCDRRRAEEARELLHMMVDGQDSSCSPDVVSYNIVINGFFNEG 207


>gi|255578371|ref|XP_002530052.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223530468|gb|EEF32352.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 554

 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 85/388 (21%), Positives = 157/388 (40%), Gaps = 29/388 (7%)

Query: 283 LNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDR 342
           LN LP +    W+F+  +H         LA ++  ++   G +P   TY   I  +   +
Sbjct: 108 LNCLPDI----WAFNIYLHLLFVEGRIDLALEVFEKIVKNGRKPDVVTYTIIIHGVCKIK 163

Query: 343 GLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPK----PF 398
                ++  + M      P +     + V      ++DLA  L+  + +    K     +
Sbjct: 164 KFDTAIQFWRDMIHKGFSPDNKACGAIVVGLCDGRKVDLAYELIIDVMKSGRVKLSTLVY 223

Query: 399 SAFLAA---CDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQV 455
           +A ++       +DK + AIK F + R    PD+ TY +  + F +             +
Sbjct: 224 NALISGFCRAGRIDKAQ-AIKSFMR-RNGCEPDLVTYNVFLNYFCDE----------LML 271

Query: 456 DSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLG---TPTY 512
           D AK++  +   M R+ I+    S   LLK +       +      +   P G     +Y
Sbjct: 272 DDAKKLLKL---MERSGIEPDVYSYNQLLKGICKGNCPDKAYLLMTNKMWPKGLCDVVSY 328

Query: 513 NTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVR 572
           NT++ +  +  ++  A ++F++M   GIPP+  T+ I I        F  A  L+  M  
Sbjct: 329 NTIIKAFCKIGDTTSAYKLFEEMGQKGIPPDVVTFTIFIKAFLGKGSFNIAKKLLDQMTE 388

Query: 573 DGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDV 632
            G  P  + YT +I  L   G  + A ++   +  +GI  DV+ +N ++   C+  R+  
Sbjct: 389 MGLSPDCIFYTTIIDHLCKSGKVEMAHSIFCDMVEQGISPDVISFNALINGFCKCSRVSE 448

Query: 633 IEFIIEQMHQNKVQPDPSTCHFVFSGYV 660
              + E+M      PD  T   +  G +
Sbjct: 449 AMHLYEEMQNRGSYPDEVTYKLIIGGLI 476



 Score = 48.5 bits (114), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 53/237 (22%), Positives = 83/237 (35%), Gaps = 71/237 (29%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPP-NAATYNIMIDCCS----------IIRC 559
           TY  ++H + + ++   A++ ++ M   G  P N A   I++  C           II  
Sbjct: 151 TYTIIIHGVCKIKKFDTAIQFWRDMIHKGFSPDNKACGAIVVGLCDGRKVDLAYELIIDV 210

Query: 560 FKS-------------------------ASALVSMMVRDGFYPQTMTYTALIKILLDYGD 594
            KS                         A A+ S M R+G  P  +TY   +    D   
Sbjct: 211 MKSGRVKLSTLVYNALISGFCRAGRIDKAQAIKSFMRRNGCEPDLVTYNVFLNYFCDELM 270

Query: 595 FDEALNLLDLVSLEGIPHDVLLYNTILKKACE-----------------KGRIDVIEF-- 635
            D+A  LL L+   GI  DV  YN +LK  C+                 KG  DV+ +  
Sbjct: 271 LDDAKKLLKLMERSGIEPDVYSYNQLLKGICKGNCPDKAYLLMTNKMWPKGLCDVVSYNT 330

Query: 636 ----------------IIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
                           + E+M Q  + PD  T       ++  G  N A + L  ++
Sbjct: 331 IIKAFCKIGDTTSAYKLFEEMGQKGIPPDVVTFTIFIKAFLGKGSFNIAKKLLDQMT 387



 Score = 44.3 bits (103), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 39/172 (22%), Positives = 68/172 (39%), Gaps = 5/172 (2%)

Query: 491 GMIRELIQYF---CDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATY 547
           G+I + +Q F     S   + +  YN  +  L+       A   + QM T G   ++ TY
Sbjct: 23  GLIDKAVQVFDEMSQSNCRVFSIDYNRFIGVLINHSRFDLANHYYSQMGTRGFSLSSFTY 82

Query: 548 NIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSL 607
           +  I     ++ F     L+  M      P    +   + +L   G  D AL + + +  
Sbjct: 83  SRFITGLCKVKNFTFIDELLHDMETLNCLPDIWAFNIYLHLLFVEGRIDLALEVFEKIVK 142

Query: 608 EGIPHDVLLYNTILKKACEKGRIDV-IEFIIEQMHQNKVQPDPSTCHFVFSG 658
            G   DV+ Y  I+   C+  + D  I+F  + +H+    PD   C  +  G
Sbjct: 143 NGRKPDVVTYTIIIHGVCKIKKFDTAIQFWRDMIHKG-FSPDNKACGAIVVG 193



 Score = 43.5 bits (101), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 43/207 (20%), Positives = 91/207 (43%), Gaps = 3/207 (1%)

Query: 507 LGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASAL 566
           L + TY+  +  L + +      E+   M+T    P+   +NI +    +      A  +
Sbjct: 77  LSSFTYSRFITGLCKVKNFTFIDELLHDMETLNCLPDIWAFNIYLHLLFVEGRIDLALEV 136

Query: 567 VSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE 626
              +V++G  P  +TYT +I  +     FD A+     +  +G   D      I+   C+
Sbjct: 137 FEKIVKNGRKPDVVTYTIIIHGVCKIKKFDTAIQFWRDMIHKGFSPDNKACGAIVVGLCD 196

Query: 627 KGRIDV-IEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCE-EV 684
             ++D+  E II+ M   +V+      + + SG+   G  + A +A++    R  CE ++
Sbjct: 197 GRKVDLAYELIIDVMKSGRVKLSTLVYNALISGFCRAGRIDKA-QAIKSFMRRNGCEPDL 255

Query: 685 STLEEKRSDFEDLILAEDSEAESRILQ 711
            T     + F D ++ +D++   ++++
Sbjct: 256 VTYNVFLNYFCDELMLDDAKKLLKLME 282



 Score = 40.8 bits (94), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 66/150 (44%), Gaps = 6/150 (4%)

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           Y + +   V+A    +A+++F +M        +  YN  I        F  A+   S M 
Sbjct: 12  YRSRIAGYVKAGLIDKAVQVFDEMSQSNCRVFSIDYNRFIGVLINHSRFDLANHYYSQMG 71

Query: 572 RDGFYPQTMTYTALIKILLDYGDF---DEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
             GF   + TY+  I  L    +F   DE L+  D+ +L  +P D+  +N  L     +G
Sbjct: 72  TRGFSLSSFTYSRFITGLCKVKNFTFIDELLH--DMETLNCLP-DIWAFNIYLHLLFVEG 128

Query: 629 RIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
           RID+   + E++ +N  +PD  T   +  G
Sbjct: 129 RIDLALEVFEKIVKNGRKPDVVTYTIIIHG 158



 Score = 40.4 bits (93), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 50/269 (18%), Positives = 102/269 (37%), Gaps = 26/269 (9%)

Query: 112 MMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKL 171
           +M+   + L+   Y  ++   C+ G +++A  +  F+  R G  P L  YN FL      
Sbjct: 210 VMKSGRVKLSTLVYNALISGFCRAGRIDKAQAIKSFM-RRNGCEPDLVTYNVFLNYFCDE 268

Query: 172 HSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKN------LSAVHEIWEDYIKHYSL 225
             +  A   L LM+   +  +  +Y +LLK  + + N      L   +++W   +     
Sbjct: 269 LMLDDAKKLLKLMERSGIEPDVYSYNQLLK-GICKGNCPDKAYLLMTNKMWPKGL----C 323

Query: 226 SIFSLRKFVWSFTRLRDLKSAYETLQHM---------VALAMMGKLYINRTSEGRLRSSR 276
            + S    + +F ++ D  SAY+  + M         V   +  K ++ + S   +    
Sbjct: 324 DVVSYNTIIKAFCKIGDTTSAYKLFEEMGQKGIPPDVVTFTIFIKAFLGKGSF-NIAKKL 382

Query: 277 LDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIR 336
           LD    +   P        ++ +I    ++    +A  +   M   G+ P   +++  I 
Sbjct: 383 LDQMTEMGLSPDCIF----YTTIIDHLCKSGKVEMAHSIFCDMVEQGISPDVISFNALIN 438

Query: 337 AIVSDRGLRNGMEVLKIMQQNNLKPQDST 365
                  +   M + + MQ     P + T
Sbjct: 439 GFCKCSRVSEAMHLYEEMQNRGSYPDEVT 467


>gi|41152686|dbj|BAD08211.1| hypothetical protein [Oryza sativa Indica Group]
 gi|67906118|dbj|BAE00069.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 102/470 (21%), Positives = 188/470 (40%), Gaps = 20/470 (4%)

Query: 227 IFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLY-----INRTSEGRLRSSRLDIPI 281
           + S    +  F +  DL  AY T   M+   ++  +      I    + +     +++  
Sbjct: 199 VVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYNSIIAALCKAQAMDKAMEVLT 258

Query: 282 PLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSD 341
            +    VM   R +++ ++H    +     A   + +M S G++P   TY+  +  +  +
Sbjct: 259 SMVKNGVMPNCR-TYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKN 317

Query: 342 RGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT---NPKPF 398
                  ++   M +  LKP+ +T  TL    +    L     LLD + R     N   F
Sbjct: 318 GRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVF 377

Query: 399 SAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDS 457
           S  + A     K ++A+ +F+KMRQ+ L PD  TY  +  +        +    F Q+  
Sbjct: 378 SILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMID 437

Query: 458 AKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLH 517
            +       ++  N++ HS        KA       +ELI    D    L T  +N+++ 
Sbjct: 438 ERLSPG---NIVYNSLIHSLCIFDKWDKA-------KELILEMLDRGICLDTIFFNSIID 487

Query: 518 SLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYP 577
           S  +      + ++F  M   G+ PN  TY+ +ID   +      A+ L++ MV  G  P
Sbjct: 488 SHCKEGRVIESEKLFDLMVRIGVKPNIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKP 547

Query: 578 QTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFII 637
             +TY  LI         ++AL L   +   G+  D++ YN IL+   +  R    + + 
Sbjct: 548 DCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELY 607

Query: 638 EQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTL 687
             + ++  Q + ST + +  G       + A+   Q L +  L  E  T 
Sbjct: 608 VGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTF 657



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 79/171 (46%), Gaps = 2/171 (1%)

Query: 495 ELIQYFCD--SKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID 552
           EL+Q   D     P    +Y TV++   +  +  +A   + +M   GI PN  TYN +I 
Sbjct: 183 ELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYNSIIA 242

Query: 553 CCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPH 612
                +    A  +++ MV++G  P   TY +++      G   EA+  L  +  +G+  
Sbjct: 243 ALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEP 302

Query: 613 DVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
           DV+ YN+++   C+ GR      + + M +  ++P+ +T   +  GY   G
Sbjct: 303 DVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKG 353



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 120/572 (20%), Positives = 224/572 (39%), Gaps = 74/572 (12%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y  ++    K G L++A    + + +R GI P +  YNS + A  K  +M  A   L  M
Sbjct: 202 YTTVINGFFKEGDLDKAYGTYHEMLDR-GILPNVVTYNSIIAALCKAQAMDKAMEVLTSM 260

Query: 185 DSRMVGKNEVTYTELL----KLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRL 240
               V  N  TY  ++         ++ +  + ++  D ++   ++  SL  ++    R 
Sbjct: 261 VKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRC 320

Query: 241 RDLKSAYETLQH---MVALAMMGKLYINRTSEGRLRS--SRLDIPIPLNALPVMKVLRWS 295
            + +  ++++        +   G L     ++G L      LD+ +     P      + 
Sbjct: 321 TEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPN----HYV 376

Query: 296 FSDVIHACGRTQNSGLAEQLML---QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
           FS +I A  +    G  +Q ML   +M+  GL P + TY   I  +     + + M   +
Sbjct: 377 FSILICAYAK---QGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFE 433

Query: 353 IMQQNNLKPQD----STIATLSV--ECSKALELDL------------------------- 381
            M    L P +    S I +L +  +  KA EL L                         
Sbjct: 434 QMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEG 493

Query: 382 ----AEALLDQISRCTNPKP----FSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTY 432
               +E L D + R    KP    +S  +       K + A K+ A M    ++PD  TY
Sbjct: 494 RVIESEKLFDLMVR-IGVKPNIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTY 552

Query: 433 ELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGM 492
             L + +  ++   +   +F +++S+     +  D+   NI    +       A      
Sbjct: 553 NTLINGYCKISRMEDALVLFREMESS----GVSPDIITYNIILQGLFQTRRTAA------ 602

Query: 493 IRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID 552
            +EL     +S T L   TYN +LH L +   +  A+ +F+ +    +     T+NIMI 
Sbjct: 603 AKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIG 662

Query: 553 CCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPH 612
               +     A  L + +  +G  P   TY+ + + L++ G  +E  +L   +   G   
Sbjct: 663 ALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTA 722

Query: 613 DVLLYNTILKKACEKG---RIDVIEFIIEQMH 641
           +  + N+I++K  ++G   R     F+I++ H
Sbjct: 723 NSRMLNSIVRKLLQRGDITRAGTYLFMIDEKH 754



 Score = 60.1 bits (144), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 76/165 (46%), Gaps = 3/165 (1%)

Query: 512 YNTVLHSLVEAQESHRAMEI-FKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           +  +L  L   + +  AM+I  ++M   G  PN  +YNI++         + A  L+ MM
Sbjct: 129 FTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMM 188

Query: 571 VRDG--FYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
             DG    P  ++YT +I      GD D+A      +   GI  +V+ YN+I+   C+  
Sbjct: 189 PDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYNSIIAALCKAQ 248

Query: 629 RIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
            +D    ++  M +N V P+  T + +  GY + G    A+  L+
Sbjct: 249 AMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLK 293


>gi|85000739|ref|XP_955088.1| hypothetical protein [Theileria annulata strain Ankara]
 gi|65303234|emb|CAI75612.1| hypothetical protein, conserved [Theileria annulata]
          Length = 559

 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 80/364 (21%), Positives = 156/364 (42%), Gaps = 26/364 (7%)

Query: 324 LQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQD--STIATLSVECSKALELDL 381
           L+  +HTY   +R  ++       +  +K + ++N + ++  S++  ++       +LD 
Sbjct: 4   LEQLAHTY--LVRVCIAILNFTVALNYVKPLLRSNHQNEEISSSLMMVATRLDSRSKLDS 61

Query: 382 AEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMR-QKLRPDIRTYELLFSLFG 440
                ++ S   N   F+  L +C  +   +R ++I  K R   L P+I+T+ ++     
Sbjct: 62  FLTFCERTSILINEACFNVILDSCIKLKNNKRLLRIINKFRVWGLLPNIQTFGIIIKTLS 121

Query: 441 NVNAPYEEGNMFSQVDSAKRINAIEMDM-----------------ARNNIQHSHISMKNL 483
           + N  ++   +F    +A+  N                         N   +S I    +
Sbjct: 122 SSNLIHDCEELFYHYITAQNTNTANGVNTNTTTNGTNNTPSSTVTVSNGANNSEIVYGCM 181

Query: 484 LKALGAEGMIRELIQYFCD----SKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCG 539
             A      +   ++ F D     K    T  Y T++    + ++  +AM IF+ M+  G
Sbjct: 182 FDAYVNNNSVDSAMRLFEDMKERGKVKPNTIMYTTLIKGYGQNKQLDKAMRIFRLMQQDG 241

Query: 540 IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEAL 599
           + PN  TYN +ID C+ +    SA+ L+  M+  G  P  +T++ +IK      D D++ 
Sbjct: 242 VEPNTVTYNSIIDACARVGEMGSATRLLEEMLSSGIEPDLITFSTIIKGYCVQSDMDKSF 301

Query: 600 NLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
            LL ++   GI  DV+LYN++L+   + G + + E +  QM +  + P   T   +   Y
Sbjct: 302 QLLSVMYERGIMPDVILYNSLLEGCVKSGLLWLCEKLWSQMQEYNIPPSNFTLTILIKMY 361

Query: 660 VNCG 663
              G
Sbjct: 362 GRSG 365



 Score = 57.0 bits (136), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 58/287 (20%), Positives = 124/287 (43%), Gaps = 29/287 (10%)

Query: 297 SDVIHAC---GRTQNSGL--AEQLMLQMQSLG-LQPSSHTYDGFIRAIVSDRGLRNGMEV 350
           S++++ C       N+ +  A +L   M+  G ++P++  Y   I+    ++ L   M +
Sbjct: 174 SEIVYGCMFDAYVNNNSVDSAMRLFEDMKERGKVKPNTIMYTTLIKGYGQNKQLDKAMRI 233

Query: 351 LKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPK--PFSAFLAACDT 407
            ++MQQ+ ++P   T  ++   C++  E+  A  LL++ +S    P    FS  +     
Sbjct: 234 FRLMQQDGVEPNTVTYNSIIDACARVGEMGSATRLLEEMLSSGIEPDLITFSTIIKGYCV 293

Query: 408 MDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM 466
               +++ ++ + M ++ + PD+  Y  L          +    ++SQ            
Sbjct: 294 QSDMDKSFQLLSVMYERGIMPDVILYNSLLEGCVKSGLLWLCEKLWSQ------------ 341

Query: 467 DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDS-----KTPLGTPTYNTVLHSLVE 521
            M   NI  S+ ++  L+K  G  G + ++ +   D         + T  Y  ++ + + 
Sbjct: 342 -MQEYNIPPSNFTLTILIKMYGRSGQLDKVFE-LADELPKRYNFSINTHVYTCLMSACIT 399

Query: 522 AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVS 568
                  ++I+K MK  G+ P+A T+  +I   S    FK A+ +V+
Sbjct: 400 NGRYAMVLDIYKYMKINGVKPDAKTFETIIQGLSRGSLFKEAAHVVT 446



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 54/253 (21%), Positives = 101/253 (39%), Gaps = 19/253 (7%)

Query: 412 ERAIKIFAKM--RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
           + A+++F  M  R K++P+   Y  L   +G             Q+D A RI  +   M 
Sbjct: 192 DSAMRLFEDMKERGKVKPNTIMYTTLIKGYGQ----------NKQLDKAMRIFRL---MQ 238

Query: 470 RNNIQHSHISMKNLLKA---LGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESH 526
           ++ ++ + ++  +++ A   +G  G    L++    S       T++T++       +  
Sbjct: 239 QDGVEPNTVTYNSIIDACARVGEMGSATRLLEEMLSSGIEPDLITFSTIIKGYCVQSDMD 298

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
           ++ ++   M   GI P+   YN +++ C           L S M      P   T T LI
Sbjct: 299 KSFQLLSVMYERGIMPDVILYNSLLEGCVKSGLLWLCEKLWSQMQEYNIPPSNFTLTILI 358

Query: 587 KILLDYGDFDEALNLLD-LVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           K+    G  D+   L D L        +  +Y  ++      GR  ++  I + M  N V
Sbjct: 359 KMYGRSGQLDKVFELADELPKRYNFSINTHVYTCLMSACITNGRYAMVLDIYKYMKINGV 418

Query: 646 QPDPSTCHFVFSG 658
           +PD  T   +  G
Sbjct: 419 KPDAKTFETIIQG 431



 Score = 47.0 bits (110), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 54/265 (20%), Positives = 111/265 (41%), Gaps = 61/265 (23%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIR---------------AIV 339
           +++ +I AC R    G A +L+ +M S G++P   T+   I+               +++
Sbjct: 248 TYNSIIDACARVGEMGSATRLLEEMLSSGIEPDLITFSTIIKGYCVQSDMDKSFQLLSVM 307

Query: 340 SDRGL---------------RNGM-----EVLKIMQQNNLKPQDSTIATLSVECSKALEL 379
            +RG+               ++G+     ++   MQ+ N+ P + T+  L     ++ +L
Sbjct: 308 YERGIMPDVILYNSLLEGCVKSGLLWLCEKLWSQMQEYNIPPSNFTLTILIKMYGRSGQL 367

Query: 380 D----LAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMR-QKLRPDIRTYEL 434
           D    LA+ L  + +   N   ++  ++AC T  +    + I+  M+   ++PD +T+E 
Sbjct: 368 DKVFELADELPKRYNFSINTHVYTCLMSACITNGRYAMVLDIYKYMKINGVKPDAKTFET 427

Query: 435 LFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIR 494
           +       +   E  ++ ++V S    N  E  +   NI+                 +++
Sbjct: 428 IIQGLSRGSLFKEAAHVVTEVYSLSNSNNGEAQIPNINIK-----------------ILQ 470

Query: 495 ELIQYFCDSKTPLGTPTYNT-VLHS 518
            L Q F +S  P    T+NT  +HS
Sbjct: 471 RLFQRFYNSVNP---NTHNTNTIHS 492



 Score = 46.2 bits (108), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 28/116 (24%), Positives = 53/116 (45%)

Query: 569 MMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
           M  R    P T+ YT LIK        D+A+ +  L+  +G+  + + YN+I+      G
Sbjct: 201 MKERGKVKPNTIMYTTLIKGYGQNKQLDKAMRIFRLMQQDGVEPNTVTYNSIIDACARVG 260

Query: 629 RIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEV 684
            +     ++E+M  + ++PD  T   +  GY      + + + L V+  R +  +V
Sbjct: 261 EMGSATRLLEEMLSSGIEPDLITFSTIIKGYCVQSDMDKSFQLLSVMYERGIMPDV 316



 Score = 40.0 bits (92), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 56/245 (22%), Positives = 104/245 (42%), Gaps = 31/245 (12%)

Query: 112 MMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKL 171
           M E  ++  N   Y  +++   +   L++A   I+ L ++ G+ P    YNS + ACA++
Sbjct: 201 MKERGKVKPNTIMYTTLIKGYGQNKQLDKAMR-IFRLMQQDGVEPNTVTYNSIIDACARV 259

Query: 172 HSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKN-------LSAVHE--IWEDYIKH 222
             M  A   L+ M S  +  + +T++ ++K    Q +       LS ++E  I  D I +
Sbjct: 260 GEMGSATRLLEEMLSSGIEPDLITFSTIIKGYCVQSDMDKSFQLLSVMYERGIMPDVILY 319

Query: 223 YSLSIFSLRK-FVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPI 281
            SL    ++   +W   +L      Y        L ++ K+Y         RS +LD   
Sbjct: 320 NSLLEGCVKSGLLWLCEKLWSQMQEYNIPPSNFTLTILIKMY--------GRSGQLDKVF 371

Query: 282 PL-NALPVMKVLRWSFSDVIH-------ACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDG 333
            L + LP     R++FS   H       AC       +   +   M+  G++P + T++ 
Sbjct: 372 ELADELPK----RYNFSINTHVYTCLMSACITNGRYAMVLDIYKYMKINGVKPDAKTFET 427

Query: 334 FIRAI 338
            I+ +
Sbjct: 428 IIQGL 432


>gi|48716454|dbj|BAD23061.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein-like
           [Oryza sativa Japonica Group]
          Length = 580

 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 117/262 (44%), Gaps = 11/262 (4%)

Query: 410 KPERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
           +P  A+++F  MR +++ PD      L +             +F Q+  A     + M+ 
Sbjct: 125 RPHDALRVFDHMRAREVVPDAHASSALLTALAKSRMTATARKVFDQMTRA----GVAMN- 179

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRA 528
                 H + +M ++    G   +   L+     +  PL   ++NTV+         + A
Sbjct: 180 -----THVYNAMLHVCLKAGDAALAESLMTRMDAAGVPLDRFSFNTVIALYCRKGMQYEA 234

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
           M + ++M+  G+  +  T+N +I      R  K AS L+  M   G  P  +TYT L+  
Sbjct: 235 MCVRERMENQGVKADVVTWNSLIHGLCKERRVKEASQLLREMAMAGVAPDHVTYTTLVDG 294

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
               GD +EA+ L   +   G+   V  YN IL+K CE G++  +  ++ +M + KVQ D
Sbjct: 295 YCRAGDLEEAVKLRGEMEAMGMLPGVATYNAILRKLCEDGKMKEVNVLLNEMDERKVQAD 354

Query: 649 PSTCHFVFSGYVNCGFHNSAME 670
             TC+ + + Y   G   SA++
Sbjct: 355 HVTCNTLINAYCKRGDMTSALK 376



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 77/374 (20%), Positives = 155/374 (41%), Gaps = 22/374 (5%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLR-NGMEVLKIM 354
           ++ ++H C +  ++ LAE LM +M + G+     +++  I A+   +G++   M V + M
Sbjct: 183 YNAMLHVCLKAGDAALAESLMTRMDAAGVPLDRFSFNTVI-ALYCRKGMQYEAMCVRERM 241

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKP--- 411
           +   +K    T  +L     K   +  A  LL +++          +    D   +    
Sbjct: 242 ENQGVKADVVTWNSLIHGLCKERRVKEASQLLREMAMAGVAPDHVTYTTLVDGYCRAGDL 301

Query: 412 ERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           E A+K+  +M    + P + TY  +           E+G M       K +N +  +M  
Sbjct: 302 EEAVKLRGEMEAMGMLPGVATYNAILRKL------CEDGKM-------KEVNVLLNEMDE 348

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQY---FCDSKTPLGTPTYNTVLHSLVEAQESHR 527
             +Q  H++   L+ A    G +   ++      +S   L   TY  ++H   +A+E   
Sbjct: 349 RKVQADHVTCNTLINAYCKRGDMTSALKVKRRMMESGLQLDQFTYKALVHGFCKAKELDE 408

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A E   +M   G  PN +  + ++D         +  A+   +++ GF P    Y +LI+
Sbjct: 409 AKEALFEMMGAGFSPNYSVLSWIVDGLCNKNNAVAVLAIPDELMKRGFPPDKAVYRSLIR 468

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
            L   G  D A N+ + +  +G+  D L+Y T+       G+      I+ +M + ++  
Sbjct: 469 RLCKKGFIDLAGNVFNEMQGKGLEADCLVYATLACAYLTAGKPVAALDILNEMAKKQLYI 528

Query: 648 DPSTCHFVFSGYVN 661
            P   + + + Y +
Sbjct: 529 TPQIYNCMCTSYAD 542



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 74/162 (45%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           T+N+++H L + +    A ++ ++M   G+ P+  TY  ++D        + A  L   M
Sbjct: 252 TWNSLIHGLCKERRVKEASQLLREMAMAGVAPDHVTYTTLVDGYCRAGDLEEAVKLRGEM 311

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
              G  P   TY A+++ L + G   E   LL+ +    +  D +  NT++   C++G +
Sbjct: 312 EAMGMLPGVATYNAILRKLCEDGKMKEVNVLLNEMDERKVQADHVTCNTLINAYCKRGDM 371

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEAL 672
                +  +M ++ +Q D  T   +  G+      + A EAL
Sbjct: 372 TSALKVKRRMMESGLQLDQFTYKALVHGFCKAKELDEAKEAL 413



 Score = 54.3 bits (129), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 61/138 (44%)

Query: 521 EAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTM 580
           ++   H A+ +F  M+   + P+A   + ++   +  R   +A  +   M R G    T 
Sbjct: 122 QSARPHDALRVFDHMRAREVVPDAHASSALLTALAKSRMTATARKVFDQMTRAGVAMNTH 181

Query: 581 TYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQM 640
            Y A++ + L  GD   A +L+  +   G+P D   +NT++   C KG       + E+M
Sbjct: 182 VYNAMLHVCLKAGDAALAESLMTRMDAAGVPLDRFSFNTVIALYCRKGMQYEAMCVRERM 241

Query: 641 HQNKVQPDPSTCHFVFSG 658
               V+ D  T + +  G
Sbjct: 242 ENQGVKADVVTWNSLIHG 259



 Score = 45.1 bits (105), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 35/146 (23%), Positives = 65/146 (44%), Gaps = 2/146 (1%)

Query: 111 RMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAK 170
           R M    +  ++  Y  ++   C+ G LEEA  L   + E  G+ P +  YN+ L    +
Sbjct: 274 REMAMAGVAPDHVTYTTLVDGYCRAGDLEEAVKLRGEM-EAMGMLPGVATYNAILRKLCE 332

Query: 171 LHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH-YSLSIFS 229
              M   N+ L+ MD R V  + VT   L+     + ++++  ++    ++    L  F+
Sbjct: 333 DGKMKEVNVLLNEMDERKVQADHVTCNTLINAYCKRGDMTSALKVKRRMMESGLQLDQFT 392

Query: 230 LRKFVWSFTRLRDLKSAYETLQHMVA 255
            +  V  F + ++L  A E L  M+ 
Sbjct: 393 YKALVHGFCKAKELDEAKEALFEMMG 418



 Score = 44.7 bits (104), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 71/406 (17%), Positives = 143/406 (35%), Gaps = 57/406 (14%)

Query: 318 QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKAL 377
            M++  + P +H     + A+   R      +V   M +  +         +   C KA 
Sbjct: 135 HMRAREVVPDAHASSALLTALAKSRMTATARKVFDQMTRAGVAMNTHVYNAMLHVCLKAG 194

Query: 378 ELDLAEALLDQISRCTNPK---PFSAFLAACDTMDKPERAIKIFAKMR-QKLRPDIRTYE 433
           +  LAE+L+ ++     P     F+  +A          A+ +  +M  Q ++ D+ T+ 
Sbjct: 195 DAALAESLMTRMDAAGVPLDRFSFNTVIALYCRKGMQYEAMCVRERMENQGVKADVVTWN 254

Query: 434 LLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMI 493
            L              +   +    K  + +  +MA   +   H++   L+      G +
Sbjct: 255 SLI-------------HGLCKERRVKEASQLLREMAMAGVAPDHVTYTTLVDGYCRAGDL 301

Query: 494 RELIQYFCDSKT----PLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNI 549
            E ++   + +     P G  TYN +L  L E  +      +  +M    +  +  T N 
Sbjct: 302 EEAVKLRGEMEAMGMLP-GVATYNAILRKLCEDGKMKEVNVLLNEMDERKVQADHVTCNT 360

Query: 550 MIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEA----------- 598
           +I+         SA  +   M+  G      TY AL+       + DEA           
Sbjct: 361 LINAYCKRGDMTSALKVKRRMMESGLQLDQFTYKALVHGFCKAKELDEAKEALFEMMGAG 420

Query: 599 ------------------------LNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIE 634
                                   L + D +   G P D  +Y +++++ C+KG ID+  
Sbjct: 421 FSPNYSVLSWIVDGLCNKNNAVAVLAIPDELMKRGFPPDKAVYRSLIRRLCKKGFIDLAG 480

Query: 635 FIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRML 680
            +  +M    ++ D      +   Y+  G   +A++ L  ++ + L
Sbjct: 481 NVFNEMQGKGLEADCLVYATLACAYLTAGKPVAALDILNEMAKKQL 526


>gi|302756343|ref|XP_002961595.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
 gi|300170254|gb|EFJ36855.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
          Length = 603

 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 116/536 (21%), Positives = 200/536 (37%), Gaps = 75/536 (13%)

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
           M E+ +  ++  Y +++  L K G L +A +L   L    G+ P    Y S +      +
Sbjct: 1   MNERNVSPDSWSYGILIDGLAKAGKLNDARDLFQKL-LHSGVTPSTVAYTSLIHGLCMAN 59

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELL----KLAVWQKNLSAVHEIWEDY----IKHYS 224
           S   A      M+ R    + VTY  ++    K  + ++    + ++ ED     +  Y+
Sbjct: 60  SFDDARELFADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYN 119

Query: 225 LSIFSLRK------FVWSFTRLRDLKSAYETLQH-MVALAMMGKLYINRTSEGRLRSSRL 277
             +  L K       +  F  +  L        H  + L +  +  I++  +        
Sbjct: 120 TVMDGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAR 179

Query: 278 DIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRA 337
           DIP             WS+  +I    +      A +L  +M   G+ PS+ TY+  I  
Sbjct: 180 DIPPD----------SWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHG 229

Query: 338 IVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP 397
           +     L   +E+ K M+    +P                            SR T    
Sbjct: 230 MCLAYTLDEALELFKSMRSKGCRP----------------------------SRFT---- 257

Query: 398 FSAFLAACDTMDKPERAIKIFAKMRQKLR-PDIRTYELLFSLFGNVNAPYEEGNMFSQVD 456
           F+  + A     K + A ++  +M      PD+ TY  L S   ++          ++VD
Sbjct: 258 FNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSI----------ARVD 307

Query: 457 SAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMI---RELIQYFCDSKTPLGTPTYN 513
            A+ +  +E DM +   + + ++   L+  L   G I   RE++     S       TYN
Sbjct: 308 DARHL--LE-DMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYN 364

Query: 514 TVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRD 573
           T++H    A ++ RA E+   M   G+ PN  TY  ++           A  + + M   
Sbjct: 365 TLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSS 424

Query: 574 GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
           G  P   TYTALI      G  D  L L   +   GI  D ++Y T+  + C+ GR
Sbjct: 425 GCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGR 480



 Score = 91.7 bits (226), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 94/401 (23%), Positives = 160/401 (39%), Gaps = 22/401 (5%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           WS+  +I    +      A  L  ++   G+ PS+  Y   I  +       +  E+   
Sbjct: 11  WSYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFAD 70

Query: 354 MQQNNLKPQDSTI-ATLSVECSKALELDLAEALLDQISRCTNPK--PFSAFLAACDTMDK 410
           M +    P   T    +   C + +  +  + +   I     P    ++  +       +
Sbjct: 71  MNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSGR 130

Query: 411 PERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
            E A+ +F +M R    P+ R++  +  + G            S++D A ++     +M 
Sbjct: 131 VEEALLLFNEMERLGCTPNRRSHNTI--ILGLCQQ--------SKIDQACQVF---HEME 177

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYF---CDSKTPLGTPTYNTVLHSLVEAQESH 526
             +I     S   L+  L   G + E  + F    DS       TYN V+H +  A    
Sbjct: 178 ARDIPPDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLD 237

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
            A+E+FK M++ G  P+  T+NI+ID          A  L+  M  DG  P  +TY+ LI
Sbjct: 238 EALELFKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLI 297

Query: 587 KILLDYGDFDEALNLL-DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
             L      D+A +LL D+V  +  P  V+  NT++   C+ GRI     +++ M  +  
Sbjct: 298 SGLCSIARVDDARHLLEDMVKRQCKP-TVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQ 356

Query: 646 QPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
            PD  T + +  G+   G    A E L  +  R L   V T
Sbjct: 357 SPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVT 397



 Score = 83.2 bits (204), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 86/204 (42%), Gaps = 3/204 (1%)

Query: 468 MARNNIQHSHISMKNLLKALGAEGMI---RELIQYFCDSKTPLGTPTYNTVLHSLVEAQE 524
           M   N+     S   L+  L   G +   R+L Q    S     T  Y +++H L  A  
Sbjct: 1   MNERNVSPDSWSYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANS 60

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
              A E+F  M   G PP+  TYN++ID        + A  L+  M+ DG  P  +TY  
Sbjct: 61  FDDARELFADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNT 120

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
           ++  L   G  +EAL L + +   G   +   +NTI+   C++ +ID    +  +M    
Sbjct: 121 VMDGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARD 180

Query: 645 VQPDPSTCHFVFSGYVNCGFHNSA 668
           + PD  +   +  G    G  N A
Sbjct: 181 IPPDSWSYGILIDGLAKAGKLNEA 204



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 79/364 (21%), Positives = 142/364 (39%), Gaps = 20/364 (5%)

Query: 319 MQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALE 378
           M    + P S +Y   I  +     L +  ++ + +  + + P      +L      A  
Sbjct: 1   MNERNVSPDSWSYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANS 60

Query: 379 LDLAEALLDQISR--CT-NPKPFSAFLAACDTMDKPERAIKIFAKMRQKLR-PDIRTYEL 434
            D A  L   ++R  C  +P  ++  + A       E A  +  KM +    PD+ TY  
Sbjct: 61  FDDARELFADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNT 120

Query: 435 LFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIR 494
           +           E   +F++             M R     +  S   ++  L  +  I 
Sbjct: 121 VMDGLCKSGRVEEALLLFNE-------------MERLGCTPNRRSHNTIILGLCQQSKID 167

Query: 495 ELIQYFCDSKT---PLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI 551
           +  Q F + +    P  + +Y  ++  L +A + + A ++F++M   GI P+A TYN++I
Sbjct: 168 QACQVFHEMEARDIPPDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVI 227

Query: 552 DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIP 611
               +      A  L   M   G  P   T+  LI      G  DEA  LL  ++ +G  
Sbjct: 228 HGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHV 287

Query: 612 HDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEA 671
            DV+ Y+T++   C   R+D    ++E M + + +P   T + +  G    G    A E 
Sbjct: 288 PDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREV 347

Query: 672 LQVL 675
           L  +
Sbjct: 348 LDAM 351



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 82/372 (22%), Positives = 152/372 (40%), Gaps = 22/372 (5%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ +IH      +   A +L   M   G  PS  TY+  I A      L    +++K M
Sbjct: 47  AYTSLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKM 106

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR--CT-NPKPFSAFLAACDTMDKP 411
            ++   P   T  T+     K+  ++ A  L +++ R  CT N +  +  +       K 
Sbjct: 107 IEDGHVPDVVTYNTVMDGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKI 166

Query: 412 ERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           ++A ++F +M  + + PD  +Y +L           E   +F +             M  
Sbjct: 167 DQACQVFHEMEARDIPPDSWSYGILIDGLAKAGKLNEAYKLFRR-------------MLD 213

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHR 527
           + I  S ++   ++  +     + E ++ F   ++    P   T+N ++ +  +  +   
Sbjct: 214 SGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKMDE 273

Query: 528 AMEIFKQMKTCGIPPNAATYNIMID-CCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
           A  + K+M   G  P+  TY+ +I   CSI R    A  L+  MV+    P  +T   LI
Sbjct: 274 AFRLLKRMTDDGHVPDVVTYSTLISGLCSIAR-VDDARHLLEDMVKRQCKPTVVTQNTLI 332

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
             L   G   EA  +LD +   G   DV+ YNT++   C  G+ +    ++  M    + 
Sbjct: 333 HGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLA 392

Query: 647 PDPSTCHFVFSG 658
           P+  T   + SG
Sbjct: 393 PNVVTYTALVSG 404



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 77/360 (21%), Positives = 142/360 (39%), Gaps = 27/360 (7%)

Query: 308 NSGLAEQLML---QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDS 364
            SG  E+ +L   +M+ LG  P+  +++  I  +     +    +V   M+  ++ P   
Sbjct: 127 KSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARDIPPDSW 186

Query: 365 TIATLSVECSKALELDLAEALLDQ-ISRCTNPKP--FSAFLAACDTMDKPERAIKIFAKM 421
           +   L    +KA +L+ A  L  + +     P    ++  +         + A+++F  M
Sbjct: 187 SYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSM 246

Query: 422 RQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISM 480
           R K  RP   T+ +L      ++A  + G M       KR       M  +      ++ 
Sbjct: 247 RSKGCRPSRFTFNIL------IDAHCKRGKMDEAFRLLKR-------MTDDGHVPDVVTY 293

Query: 481 KNLLKALGAEGMI---RELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKT 537
             L+  L +   +   R L++     +      T NT++H L +A     A E+   M +
Sbjct: 294 STLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVS 353

Query: 538 CGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDE 597
            G  P+  TYN ++         + A  L+S MV  G  P  +TYTAL+  L       E
Sbjct: 354 SGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPE 413

Query: 598 ALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFS 657
           A  +   +   G   ++  Y  ++   C  G++D    +  +M    + PD    H V+ 
Sbjct: 414 ACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPD----HVVYG 469



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 129/594 (21%), Positives = 207/594 (34%), Gaps = 87/594 (14%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y +++ A CK G LEEA +LI  + E  G  P +  YN+ +    K   +  A L  + M
Sbjct: 83  YNVIIDASCKRGMLEEACDLIKKMIED-GHVPDVVTYNTVMDGLCKSGRVEEALLLFNEM 141

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLK 244
           +      N  ++  ++     Q  +    +++      + +    +    WS+  L D  
Sbjct: 142 ERLGCTPNRRSHNTIILGLCQQSKIDQACQVF------HEMEARDIPPDSWSYGILID-- 193

Query: 245 SAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACG 304
                      LA  GKL        +L    LD  I  +A+        +++ VIH   
Sbjct: 194 ----------GLAKAGKL----NEAYKLFRRMLDSGITPSAV--------TYNVVIHGMC 231

Query: 305 RTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDS 364
                  A +L   M+S G +PS  T++  I A      +     +LK M  +   P   
Sbjct: 232 LAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVV 291

Query: 365 TIATL-SVECSKALELDLAEALLDQISRCTNPKPFSA---FLAACDTMDKPERAIKIFAK 420
           T +TL S  CS A   D    L D + R   P   +        C      E    + A 
Sbjct: 292 TYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAM 351

Query: 421 MRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISM 480
           +     PD+ TY  L  + G+  A         Q + A                      
Sbjct: 352 VSSGQSPDVVTYNTL--VHGHCRA--------GQTERA---------------------- 379

Query: 481 KNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGI 540
           + LL  + A G+   ++ Y               ++  L +A     A  +F QMK+ G 
Sbjct: 380 RELLSDMVARGLAPNVVTY-------------TALVSGLCKANRLPEACGVFAQMKSSGC 426

Query: 541 PPNAATYNIMI-DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEAL 599
            PN  TY  +I   CS  +       L   MV  G  P  + Y  L   L   G    AL
Sbjct: 427 APNLFTYTALILGFCSAGQ-VDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARAL 485

Query: 600 NLL--DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFS 657
            +L     SL        +Y   +    + G++++    +  M +    P P  C  + +
Sbjct: 486 EILREGRESLRSEAWGDEVYRFAVDGLLDAGKMEMALGFVRDMVRGGQLPAPERCASLVA 545

Query: 658 GYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDFEDLILAEDSEAESRILQ 711
           G    G      EA  VL   M          K + F + ++ +  E E  +L+
Sbjct: 546 GLCKSG---QGGEARAVLEEIMDLAYGGKARGKAAKFVEEMVGKGYEIEDGVLK 596



 Score = 43.5 bits (101), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 83/413 (20%), Positives = 159/413 (38%), Gaps = 37/413 (8%)

Query: 55  TQMQIVDALCRGERSRASHLLLN----LG-----HAHHSLGADDFFHILNYCARSPDPLF 105
           T   ++D LC+  R   + LL N    LG      +H+++       IL  C +S     
Sbjct: 117 TYNTVMDGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTI-------ILGLCQQSKIDQ- 168

Query: 106 VMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFL 165
             + +  ME ++I  ++  Y +++  L K G L EA  L   + +  GI P    YN  +
Sbjct: 169 ACQVFHEMEARDIPPDSWSYGILIDGLAKAGKLNEAYKLFRRMLDS-GITPSAVTYNVVI 227

Query: 166 GACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELL----KLAVWQKNLSAVHEIWEDYIK 221
                 +++  A      M S+    +  T+  L+    K     +    +  + +D   
Sbjct: 228 HGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHV 287

Query: 222 HYSLSIFSLRKFVWSFTRLRDLKSAYETL---QHMVALAMMGKLYINRTSEGRLRSSR-- 276
              ++  +L   + S  R+ D +   E +   Q    +     L       GR++ +R  
Sbjct: 288 PDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREV 347

Query: 277 LDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIR 336
           LD  +     P +     +++ ++H   R   +  A +L+  M + GL P+  TY   + 
Sbjct: 348 LDAMVSSGQSPDV----VTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVS 403

Query: 337 AIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPK 396
            +     L     V   M+ +   P   T   L +    A ++D    L  ++  C    
Sbjct: 404 GLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMV-CAGIS 462

Query: 397 P----FSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELL-FSLFGNVNA 444
           P    +    A      +  RA++I  + R+ LR +    E+  F++ G ++A
Sbjct: 463 PDHVVYGTLAAELCKSGRSARALEILREGRESLRSEAWGDEVYRFAVDGLLDA 515


>gi|115438490|ref|NP_001043552.1| Os01g0611900 [Oryza sativa Japonica Group]
 gi|21104680|dbj|BAB93270.1| fertility restorer homologue-like [Oryza sativa Japonica Group]
 gi|113533083|dbj|BAF05466.1| Os01g0611900 [Oryza sativa Japonica Group]
 gi|125571150|gb|EAZ12665.1| hypothetical protein OsJ_02580 [Oryza sativa Japonica Group]
 gi|215767882|dbj|BAH00111.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 800

 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 90/403 (22%), Positives = 168/403 (41%), Gaps = 27/403 (6%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           W F  V+ AC +      A +L  +M +  ++P        I ++   R     + VL+ 
Sbjct: 178 WMFDVVMRACFKEGMYDDAVRLFDEMPASEIEPDQRVCSVAIASLCKLRDANRALLVLRK 237

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAA------CDT 407
           MQ     P D T  ++     K   ++ A  + D++      K  S  LA       C  
Sbjct: 238 MQDAGFVPWDFTFNSVVDVLVKGGRMEEALHIKDEL--LATGKKMSVVLATTLMHGYC-L 294

Query: 408 MDKPERAIKIFAK-MRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM 466
             +  +A+ IF + +R  L P   TY +L      +    EEG         ++   +  
Sbjct: 295 QREVRKALDIFEETLRDGLVPTDVTYTVL------IRGCTEEG-------MPEKAYELCR 341

Query: 467 DMARNNIQHSHISMKNLLKALGAEGMIRELIQYF---CDSKTPLGTPTYNTVLHSLVEAQ 523
            M  + +  S      ++K L  + + ++ +  F    DS  P    TYN ++H L + +
Sbjct: 342 QMRDHGLLPSTNEFNMVIKGLLNDKLWKDAVSLFKEMADSGIP-DAFTYNILIHWLCQRR 400

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
           +   A+ ++++M   G+ P   TY+ ++ C  +  C   A  L + M   GF P  +TYT
Sbjct: 401 KIREALNLWEKMNETGVKPYIVTYHSLLLCYCVNGCMDEAVKLYTEMPGKGFTPNVVTYT 460

Query: 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
            L+K  ++   FD+A  LL  +   G+  +   YNT++   C  GR+  +  ++++    
Sbjct: 461 TLMKGHINKAAFDKAYALLAEMKQNGVSCNDYTYNTLINGLCVVGRVCEVGEMLKRFETE 520

Query: 644 KVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
              P   T + + +G++  G   SA    Q +  + +   + T
Sbjct: 521 GFVPTAMTYNSIINGFIKAGMMGSAFAVYQQMCAKGIPPNIVT 563



 Score = 79.0 bits (193), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 91/410 (22%), Positives = 169/410 (41%), Gaps = 68/410 (16%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ +I  C        A +L  QM+  GL PS++ ++  I+ +++D+  ++ + + K M
Sbjct: 319 TYTVLIRGCTEEGMPEKAYELCRQMRDHGLLPSTNEFNMVIKGLLNDKLWKDAVSLFKEM 378

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPF-----SAFLAAC--DT 407
             + + P   T   L     +  ++  A  L ++++  T  KP+     S  L  C    
Sbjct: 379 ADSGI-PDAFTYNILIHWLCQRRKIREALNLWEKMNE-TGVKPYIVTYHSLLLCYCVNGC 436

Query: 408 MDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM 466
           MD+   A+K++ +M  K   P++ TY  L    G++N         +  D A    A+  
Sbjct: 437 MDE---AVKLYTEMPGKGFTPNVVTYTTLMK--GHINK--------AAFDKAY---ALLA 480

Query: 467 DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPT---YNTVLHSLVEAQ 523
           +M +N +  +  +   L+  L   G + E+ +     +T    PT   YN++++  ++A 
Sbjct: 481 EMKQNGVSCNDYTYNTLINGLCVVGRVCEVGEMLKRFETEGFVPTAMTYNSIINGFIKAG 540

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMID------CCSI-------IRC----------- 559
               A  +++QM   GIPPN  TY   ID      CC +       +RC           
Sbjct: 541 MMGSAFAVYQQMCAKGIPPNIVTYTSFIDGYCKTSCCDLALKMLNDVRCKGLRPDIAAYN 600

Query: 560 -----------FKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLE 608
                         A  ++ +M++DG  P    Y + I    +    +EAL L + +  E
Sbjct: 601 SLIFGFCQEGNMSHALQVLVLMLKDGLLPNISVYNSFITGYKNLKMMEEALRLYEKMIKE 660

Query: 609 GIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
           GI  D   Y T++    + G +     +  +M      PD    H  F+ 
Sbjct: 661 GIDLDTATYTTLIDGFSKDGNVTFALKLYSEMVAKGNIPD----HITFTA 706



 Score = 69.7 bits (169), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 74/422 (17%), Positives = 169/422 (40%), Gaps = 29/422 (6%)

Query: 294 WSFS-----DVIHACGRTQNS-GLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNG 347
           W F+     DV+   GR + +  + ++L+   + + +  ++    G+       R +R  
Sbjct: 246 WDFTFNSVVDVLVKGGRMEEALHIKDELLATGKKMSVVLATTLMHGY----CLQREVRKA 301

Query: 348 MEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI---SRCTNPKPFSAFLAA 404
           +++ +   ++ L P D T   L   C++    + A  L  Q+       +   F+  +  
Sbjct: 302 LDIFEETLRDGLVPTDVTYTVLIRGCTEEGMPEKAYELCRQMRDHGLLPSTNEFNMVIKG 361

Query: 405 CDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAI 464
                  + A+ +F +M     PD  TY +L           E  N++ +          
Sbjct: 362 LLNDKLWKDAVSLFKEMADSGIPDAFTYNILIHWLCQRRKIREALNLWEK---------- 411

Query: 465 EMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVE 521
              M    ++   ++  +LL      G + E ++ + +      TP   TY T++   + 
Sbjct: 412 ---MNETGVKPYIVTYHSLLLCYCVNGCMDEAVKLYTEMPGKGFTPNVVTYTTLMKGHIN 468

Query: 522 AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMT 581
                +A  +  +MK  G+  N  TYN +I+   ++        ++     +GF P  MT
Sbjct: 469 KAAFDKAYALLAEMKQNGVSCNDYTYNTLINGLCVVGRVCEVGEMLKRFETEGFVPTAMT 528

Query: 582 YTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMH 641
           Y ++I   +  G    A  +   +  +GIP +++ Y + +   C+    D+   ++  + 
Sbjct: 529 YNSIINGFIKAGMMGSAFAVYQQMCAKGIPPNIVTYTSFIDGYCKTSCCDLALKMLNDVR 588

Query: 642 QNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDFEDLILAE 701
              ++PD +  + +  G+   G  + A++ L ++    L   +S      + +++L + E
Sbjct: 589 CKGLRPDIAAYNSLIFGFCQEGNMSHALQVLVLMLKDGLLPNISVYNSFITGYKNLKMME 648

Query: 702 DS 703
           ++
Sbjct: 649 EA 650



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 87/345 (25%), Positives = 140/345 (40%), Gaps = 51/345 (14%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAI-VSDRGLRNGMEVLKIMQQNNLKPQDSTIATLS 370
           A  L+ +M+  G+  + +TY+  I  + V  R    G E+LK  +     P   T  ++ 
Sbjct: 475 AYALLAEMKQNGVSCNDYTYNTLINGLCVVGRVCEVG-EMLKRFETEGFVPTAMTYNSII 533

Query: 371 VECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKP---ERAIKIFAKMRQK-LR 426
               KA  +  A A+  Q+     P     + +  D   K    + A+K+   +R K LR
Sbjct: 534 NGFIKAGMMGSAFAVYQQMCAKGIPPNIVTYTSFIDGYCKTSCCDLALKMLNDVRCKGLR 593

Query: 427 PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKA 486
           PDI  Y  L  +FG      +EGNM                        SH         
Sbjct: 594 PDIAAYNSL--IFGFC----QEGNM------------------------SHA-------- 615

Query: 487 LGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAAT 546
                 ++ L+    D   P     YN+ +      +    A+ ++++M   GI  + AT
Sbjct: 616 ------LQVLVLMLKDGLLP-NISVYNSFITGYKNLKMMEEALRLYEKMIKEGIDLDTAT 668

Query: 547 YNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVS 606
           Y  +ID  S       A  L S MV  G  P  +T+TAL   L   GD D+A  LLD ++
Sbjct: 669 YTTLIDGFSKDGNVTFALKLYSEMVAKGNIPDHITFTALTHGLCRNGDIDDARKLLDEMN 728

Query: 607 LEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
              I  +VL+YN ++      G++     + ++M + K+ PD +T
Sbjct: 729 RLDIRPNVLMYNMLINGYLRNGKLQEAFRLHDEMLERKIMPDDTT 773



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 78/388 (20%), Positives = 151/388 (38%), Gaps = 44/388 (11%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A  L  +M   G+ P + TY+  I  +   R +R  + + + M +  +KP   T  +L +
Sbjct: 371 AVSLFKEMADSGI-PDAFTYNILIHWLCQRRKIREALNLWEKMNETGVKPYIVTYHSLLL 429

Query: 372 ECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKP-------ERAIKIFAKMRQK 424
                  +D A  L  ++      K F+  +    T+ K        ++A  + A+M+Q 
Sbjct: 430 CYCVNGCMDEAVKLYTEMPG----KGFTPNVVTYTTLMKGHINKAAFDKAYALLAEMKQN 485

Query: 425 -LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNL 483
            +  +  TY  L +    V    E G M  + ++      +   M  N+I +  I    +
Sbjct: 486 GVSCNDYTYNTLINGLCVVGRVCEVGEMLKRFETE---GFVPTAMTYNSIINGFIKAGMM 542

Query: 484 LKALG------AEGMIRELIQYF-----------CDSKTPL-----------GTPTYNTV 515
             A        A+G+   ++ Y            CD    +               YN++
Sbjct: 543 GSAFAVYQQMCAKGIPPNIVTYTSFIDGYCKTSCCDLALKMLNDVRCKGLRPDIAAYNSL 602

Query: 516 LHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGF 575
           +    +      A+++   M   G+ PN + YN  I     ++  + A  L   M+++G 
Sbjct: 603 IFGFCQEGNMSHALQVLVLMLKDGLLPNISVYNSFITGYKNLKMMEEALRLYEKMIKEGI 662

Query: 576 YPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEF 635
              T TYT LI      G+   AL L   +  +G   D + +  +    C  G ID    
Sbjct: 663 DLDTATYTTLIDGFSKDGNVTFALKLYSEMVAKGNIPDHITFTALTHGLCRNGDIDDARK 722

Query: 636 IIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
           ++++M++  ++P+    + + +GY+  G
Sbjct: 723 LLDEMNRLDIRPNVLMYNMLINGYLRNG 750



 Score = 45.4 bits (106), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 35/165 (21%), Positives = 69/165 (41%)

Query: 506 PLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASA 565
           PL    ++ V+ +  +      A+ +F +M    I P+    ++ I     +R    A  
Sbjct: 174 PLDAWMFDVVMRACFKEGMYDDAVRLFDEMPASEIEPDQRVCSVAIASLCKLRDANRALL 233

Query: 566 LVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKAC 625
           ++  M   GF P   T+ +++ +L+  G  +EAL++ D +   G    V+L  T++   C
Sbjct: 234 VLRKMQDAGFVPWDFTFNSVVDVLVKGGRMEEALHIKDELLATGKKMSVVLATTLMHGYC 293

Query: 626 EKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAME 670
            +  +     I E+  ++ + P   T   +  G    G    A E
Sbjct: 294 LQREVRKALDIFEETLRDGLVPTDVTYTVLIRGCTEEGMPEKAYE 338



 Score = 42.0 bits (97), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 89/448 (19%), Positives = 170/448 (37%), Gaps = 79/448 (17%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y +++  LC+   + EA NL   + E  G+ P +  Y+S L        M  A      M
Sbjct: 389 YNILIHWLCQRRKIREALNLWEKMNET-GVKPYIVTYHSLLLCYCVNGCMDEAVKLYTEM 447

Query: 185 DSRMVGKNEVTYTELLK----LAVWQKNLSAVHEIWEDYIKHYSLSIFSLRK---FVWSF 237
             +    N VTYT L+K     A + K  + + E+ ++ +     +  +L      V   
Sbjct: 448 PGKGFTPNVVTYTTLMKGHINKAAFDKAYALLAEMKQNGVSCNDYTYNTLINGLCVVGRV 507

Query: 238 TRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDI-------PIPLNALPVMK 290
             + ++   +ET +  V  AM     IN   +  +  S   +        IP N +    
Sbjct: 508 CEVGEMLKRFET-EGFVPTAMTYNSIINGFIKAGMMGSAFAVYQQMCAKGIPPNIV---- 562

Query: 291 VLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEV 350
               +++  I    +T    LA +++  ++  GL+P    Y+  I     +  + + ++V
Sbjct: 563 ----TYTSFIDGYCKTSCCDLALKMLNDVRCKGLRPDIAAYNSLIFGFCQEGNMSHALQV 618

Query: 351 LKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDK 410
           L +M ++ L P  S                                 +++F+     +  
Sbjct: 619 LVLMLKDGLLPNISV--------------------------------YNSFITGYKNLKM 646

Query: 411 PERAIKIFAKM-RQKLRPDIRTYELL---FSLFGNVNAPYEEGNMFSQVDSAKRINAIEM 466
            E A++++ KM ++ +  D  TY  L   FS  GNV    +   ++S++           
Sbjct: 647 MEEALRLYEKMIKEGIDLDTATYTTLIDGFSKDGNVTFALK---LYSEM----------- 692

Query: 467 DMARNNIQHSHISMKNLLKALGAEGMI---RELIQYFCDSKTPLGTPTYNTVLHSLVEAQ 523
            +A+ NI   HI+   L   L   G I   R+L+              YN +++  +   
Sbjct: 693 -VAKGNIP-DHITFTALTHGLCRNGDIDDARKLLDEMNRLDIRPNVLMYNMLINGYLRNG 750

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMI 551
           +   A  +  +M    I P+  TY+I++
Sbjct: 751 KLQEAFRLHDEMLERKIMPDDTTYDILV 778



 Score = 39.7 bits (91), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 48/283 (16%), Positives = 104/283 (36%), Gaps = 22/283 (7%)

Query: 314 QLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVEC 373
           +++ + ++ G  P++ TY+  I   +    + +   V + M    + P   T  +     
Sbjct: 512 EMLKRFETEGFVPTAMTYNSIINGFIKAGMMGSAFAVYQQMCAKGIPPNIVTYTSFIDGY 571

Query: 374 SKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDKPERAIKIFAKM-RQKLRPD 428
            K    DLA  +L+ + RC   +P    +++ +           A+++   M +  L P+
Sbjct: 572 CKTSCCDLALKMLNDV-RCKGLRPDIAAYNSLIFGFCQEGNMSHALQVLVLMLKDGLLPN 630

Query: 429 IRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALG 488
           I  Y    + + N+    E   ++ +             M +  I     +   L+    
Sbjct: 631 ISVYNSFITGYKNLKMMEEALRLYEK-------------MIKEGIDLDTATYTTLIDGFS 677

Query: 489 AEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAA 545
            +G +   ++ + +       P   T+  + H L    +   A ++  +M    I PN  
Sbjct: 678 KDGNVTFALKLYSEMVAKGNIPDHITFTALTHGLCRNGDIDDARKLLDEMNRLDIRPNVL 737

Query: 546 TYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
            YN++I+        + A  L   M+     P   TY  L+ +
Sbjct: 738 MYNMLINGYLRNGKLQEAFRLHDEMLERKIMPDDTTYDILVGM 780


>gi|218188645|gb|EEC71072.1| hypothetical protein OsI_02831 [Oryza sativa Indica Group]
          Length = 800

 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 90/403 (22%), Positives = 168/403 (41%), Gaps = 27/403 (6%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           W F  V+ AC +      A +L  +M +  ++P        I ++   R     + VL+ 
Sbjct: 178 WMFDVVMRACFKEGMYDDAVRLFDEMPASEIEPDQRVCSVAIASLCKLRDANRALLVLRK 237

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAA------CDT 407
           MQ     P D T  ++     K   ++ A  + D++      K  S  LA       C  
Sbjct: 238 MQDAGFVPWDFTFNSVVDVLVKGGRMEEALHIKDEL--LATGKKMSVVLATTLMHGYC-L 294

Query: 408 MDKPERAIKIFAK-MRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM 466
             +  +A+ IF + +R  L P   TY +L      +    EEG         ++   +  
Sbjct: 295 QREVRKALDIFEETLRDGLVPTDVTYTVL------IRGCTEEG-------MPEKAYELCR 341

Query: 467 DMARNNIQHSHISMKNLLKALGAEGMIRELIQYF---CDSKTPLGTPTYNTVLHSLVEAQ 523
            M  + +  S      ++K L  + + ++ +  F    DS  P    TYN ++H L + +
Sbjct: 342 QMRDHGLLPSTNEFNMVIKGLLNDKLWKDAVSLFKEMADSGIP-DAFTYNILIHWLCQRR 400

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
           +   A+ ++++M   G+ P   TY+ ++ C  +  C   A  L + M   GF P  +TYT
Sbjct: 401 KIREALNLWEKMNETGVKPYIVTYHSLLLCYCVNGCMDEAVKLYTEMPGKGFTPNVVTYT 460

Query: 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
            L+K  ++   FD+A  LL  +   G+  +   YNT++   C  GR+  +  ++++    
Sbjct: 461 TLMKGHINKAAFDKAYALLAEMKQNGVSCNDYTYNTLINGLCVVGRVCEVGEMLKRFETE 520

Query: 644 KVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
              P   T + + +G++  G   SA    Q +  + +   + T
Sbjct: 521 GFVPTAMTYNSIINGFIKAGMMGSAFAVYQQMCAKGIPPNIVT 563



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 90/410 (21%), Positives = 168/410 (40%), Gaps = 68/410 (16%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ +I  C        A +L  QM+  GL PS++ ++  I+ +++D+  ++ + + K M
Sbjct: 319 TYTVLIRGCTEEGMPEKAYELCRQMRDHGLLPSTNEFNMVIKGLLNDKLWKDAVSLFKEM 378

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPF-----SAFLAAC--DT 407
             + + P   T   L     +  ++  A  L ++++  T  KP+     S  L  C    
Sbjct: 379 ADSGI-PDAFTYNILIHWLCQRRKIREALNLWEKMNE-TGVKPYIVTYHSLLLCYCVNGC 436

Query: 408 MDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM 466
           MD+   A+K++ +M  K   P++ TY  L    G++N         +  D A    A+  
Sbjct: 437 MDE---AVKLYTEMPGKGFTPNVVTYTTLMK--GHINK--------AAFDKAY---ALLA 480

Query: 467 DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPT---YNTVLHSLVEAQ 523
           +M +N +  +  +   L+  L   G + E+ +     +T    PT   YN++++  ++A 
Sbjct: 481 EMKQNGVSCNDYTYNTLINGLCVVGRVCEVGEMLKRFETEGFVPTAMTYNSIINGFIKAG 540

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMID------CCSI-------IRC----------- 559
               A  +++QM   GIPPN  TY   ID      CC +       +RC           
Sbjct: 541 MMGSAFAVYQQMCAKGIPPNIVTYTSFIDGYCKTSCCDLALKMLNDVRCKGLRPDIAAYN 600

Query: 560 -----------FKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLE 608
                         A  ++ +M++DG  P    Y + I    +    +EAL   + +  E
Sbjct: 601 SLIYGFCQEGNMSHALQVLVLMLKDGLLPNISVYNSFITGYKNLKMMEEALRFYEKMIKE 660

Query: 609 GIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
           GI  D   Y T++    + G +     +  +M      PD    H  F+ 
Sbjct: 661 GIDLDTATYTTLIDGFSKDGNVTFALKLYSEMVAKGNIPD----HITFTA 706



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 74/422 (17%), Positives = 169/422 (40%), Gaps = 29/422 (6%)

Query: 294 WSFS-----DVIHACGRTQNS-GLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNG 347
           W F+     DV+   GR + +  + ++L+   + + +  ++    G+       R +R  
Sbjct: 246 WDFTFNSVVDVLVKGGRMEEALHIKDELLATGKKMSVVLATTLMHGYCL----QREVRKA 301

Query: 348 MEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI---SRCTNPKPFSAFLAA 404
           +++ +   ++ L P D T   L   C++    + A  L  Q+       +   F+  +  
Sbjct: 302 LDIFEETLRDGLVPTDVTYTVLIRGCTEEGMPEKAYELCRQMRDHGLLPSTNEFNMVIKG 361

Query: 405 CDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAI 464
                  + A+ +F +M     PD  TY +L           E  N++ +          
Sbjct: 362 LLNDKLWKDAVSLFKEMADSGIPDAFTYNILIHWLCQRRKIREALNLWEK---------- 411

Query: 465 EMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVE 521
              M    ++   ++  +LL      G + E ++ + +      TP   TY T++   + 
Sbjct: 412 ---MNETGVKPYIVTYHSLLLCYCVNGCMDEAVKLYTEMPGKGFTPNVVTYTTLMKGHIN 468

Query: 522 AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMT 581
                +A  +  +MK  G+  N  TYN +I+   ++        ++     +GF P  MT
Sbjct: 469 KAAFDKAYALLAEMKQNGVSCNDYTYNTLINGLCVVGRVCEVGEMLKRFETEGFVPTAMT 528

Query: 582 YTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMH 641
           Y ++I   +  G    A  +   +  +GIP +++ Y + +   C+    D+   ++  + 
Sbjct: 529 YNSIINGFIKAGMMGSAFAVYQQMCAKGIPPNIVTYTSFIDGYCKTSCCDLALKMLNDVR 588

Query: 642 QNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDFEDLILAE 701
              ++PD +  + +  G+   G  + A++ L ++    L   +S      + +++L + E
Sbjct: 589 CKGLRPDIAAYNSLIYGFCQEGNMSHALQVLVLMLKDGLLPNISVYNSFITGYKNLKMME 648

Query: 702 DS 703
           ++
Sbjct: 649 EA 650



 Score = 66.2 bits (160), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 86/345 (24%), Positives = 137/345 (39%), Gaps = 51/345 (14%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAI-VSDRGLRNGMEVLKIMQQNNLKPQDSTIATLS 370
           A  L+ +M+  G+  + +TY+  I  + V  R    G E+LK  +     P   T  ++ 
Sbjct: 475 AYALLAEMKQNGVSCNDYTYNTLINGLCVVGRVCEVG-EMLKRFETEGFVPTAMTYNSII 533

Query: 371 VECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKP---ERAIKIFAKMRQK-LR 426
               KA  +  A A+  Q+     P     + +  D   K    + A+K+   +R K LR
Sbjct: 534 NGFIKAGMMGSAFAVYQQMCAKGIPPNIVTYTSFIDGYCKTSCCDLALKMLNDVRCKGLR 593

Query: 427 PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKA 486
           PDI  Y  L   F       +EGNM                        SH         
Sbjct: 594 PDIAAYNSLIYGF------CQEGNM------------------------SHA-------- 615

Query: 487 LGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAAT 546
                 ++ L+    D   P     YN+ +      +    A+  +++M   GI  + AT
Sbjct: 616 ------LQVLVLMLKDGLLP-NISVYNSFITGYKNLKMMEEALRFYEKMIKEGIDLDTAT 668

Query: 547 YNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVS 606
           Y  +ID  S       A  L S MV  G  P  +T+TAL   L   GD D+A  LLD ++
Sbjct: 669 YTTLIDGFSKDGNVTFALKLYSEMVAKGNIPDHITFTALTHGLCRNGDIDDARKLLDEMN 728

Query: 607 LEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
              I  +VL+YN ++      G++     + ++M + K+ PD +T
Sbjct: 729 RLDIRPNVLMYNMLINGYLRNGKLQEAFRLHDEMLERKIMPDDTT 773



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 77/388 (19%), Positives = 151/388 (38%), Gaps = 44/388 (11%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A  L  +M   G+ P + TY+  I  +   R +R  + + + M +  +KP   T  +L +
Sbjct: 371 AVSLFKEMADSGI-PDAFTYNILIHWLCQRRKIREALNLWEKMNETGVKPYIVTYHSLLL 429

Query: 372 ECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKP-------ERAIKIFAKMRQK 424
                  +D A  L  ++      K F+  +    T+ K        ++A  + A+M+Q 
Sbjct: 430 CYCVNGCMDEAVKLYTEMPG----KGFTPNVVTYTTLMKGHINKAAFDKAYALLAEMKQN 485

Query: 425 -LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNL 483
            +  +  TY  L +    V    E G M  + ++      +   M  N+I +  I    +
Sbjct: 486 GVSCNDYTYNTLINGLCVVGRVCEVGEMLKRFETE---GFVPTAMTYNSIINGFIKAGMM 542

Query: 484 LKALG------AEGMIRELIQYF-----------CDSKTPL-----------GTPTYNTV 515
             A        A+G+   ++ Y            CD    +               YN++
Sbjct: 543 GSAFAVYQQMCAKGIPPNIVTYTSFIDGYCKTSCCDLALKMLNDVRCKGLRPDIAAYNSL 602

Query: 516 LHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGF 575
           ++   +      A+++   M   G+ PN + YN  I     ++  + A      M+++G 
Sbjct: 603 IYGFCQEGNMSHALQVLVLMLKDGLLPNISVYNSFITGYKNLKMMEEALRFYEKMIKEGI 662

Query: 576 YPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEF 635
              T TYT LI      G+   AL L   +  +G   D + +  +    C  G ID    
Sbjct: 663 DLDTATYTTLIDGFSKDGNVTFALKLYSEMVAKGNIPDHITFTALTHGLCRNGDIDDARK 722

Query: 636 IIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
           ++++M++  ++P+    + + +GY+  G
Sbjct: 723 LLDEMNRLDIRPNVLMYNMLINGYLRNG 750



 Score = 45.4 bits (106), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 35/165 (21%), Positives = 69/165 (41%)

Query: 506 PLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASA 565
           PL    ++ V+ +  +      A+ +F +M    I P+    ++ I     +R    A  
Sbjct: 174 PLDAWMFDVVMRACFKEGMYDDAVRLFDEMPASEIEPDQRVCSVAIASLCKLRDANRALL 233

Query: 566 LVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKAC 625
           ++  M   GF P   T+ +++ +L+  G  +EAL++ D +   G    V+L  T++   C
Sbjct: 234 VLRKMQDAGFVPWDFTFNSVVDVLVKGGRMEEALHIKDELLATGKKMSVVLATTLMHGYC 293

Query: 626 EKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAME 670
            +  +     I E+  ++ + P   T   +  G    G    A E
Sbjct: 294 LQREVRKALDIFEETLRDGLVPTDVTYTVLIRGCTEEGMPEKAYE 338



 Score = 39.3 bits (90), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 48/283 (16%), Positives = 103/283 (36%), Gaps = 22/283 (7%)

Query: 314 QLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVEC 373
           +++ + ++ G  P++ TY+  I   +    + +   V + M    + P   T  +     
Sbjct: 512 EMLKRFETEGFVPTAMTYNSIINGFIKAGMMGSAFAVYQQMCAKGIPPNIVTYTSFIDGY 571

Query: 374 SKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDKPERAIKIFAKM-RQKLRPD 428
            K    DLA  +L+ + RC   +P    +++ +           A+++   M +  L P+
Sbjct: 572 CKTSCCDLALKMLNDV-RCKGLRPDIAAYNSLIYGFCQEGNMSHALQVLVLMLKDGLLPN 630

Query: 429 IRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALG 488
           I  Y    + + N+    E    + +             M +  I     +   L+    
Sbjct: 631 ISVYNSFITGYKNLKMMEEALRFYEK-------------MIKEGIDLDTATYTTLIDGFS 677

Query: 489 AEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAA 545
            +G +   ++ + +       P   T+  + H L    +   A ++  +M    I PN  
Sbjct: 678 KDGNVTFALKLYSEMVAKGNIPDHITFTALTHGLCRNGDIDDARKLLDEMNRLDIRPNVL 737

Query: 546 TYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
            YN++I+        + A  L   M+     P   TY  L+ +
Sbjct: 738 MYNMLINGYLRNGKLQEAFRLHDEMLERKIMPDDTTYDILVGM 780


>gi|302794005|ref|XP_002978767.1| hypothetical protein SELMODRAFT_109632 [Selaginella moellendorffii]
 gi|300153576|gb|EFJ20214.1| hypothetical protein SELMODRAFT_109632 [Selaginella moellendorffii]
          Length = 521

 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 84/378 (22%), Positives = 154/378 (40%), Gaps = 23/378 (6%)

Query: 319 MQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALE 378
           +Q    +P    Y+  I A      + +  +    MQ+    P + T   L      A  
Sbjct: 95  LQGTAFRPDLGCYNLLIDAYGKSLNIEDAEKTFNRMQEALCVPNEETFGVLINGYRLAGS 154

Query: 379 LDLAEALLDQI-SRCTNPKPFS--AFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYEL 434
            + AE L  Q+  R  +P P +   FL   +   +  RA  +F  + + +  P+I TY  
Sbjct: 155 FEKAEELFVQMQKRGYSPGPLACNTFLHVLEDAKEYRRAEALFRDLEKYECEPNIDTYNR 214

Query: 435 LFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIR 494
           +  ++G    P +   ++  +  A         M   NI     +   L+ A   +G+ R
Sbjct: 215 MIVIYGKAGEPSKAEMLYRSMRRA---------MCPPNI----CTFTALMNAFARQGLYR 261

Query: 495 ELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI 551
           E  +YF   +     P    YN ++ +  +      A+EIF+ M+  G  P+  ++NI+I
Sbjct: 262 EAERYFDKLQEFDYKPDHYAYNALMEAYSQGGSPAGALEIFQTMQRNGCFPDTVSHNILI 321

Query: 552 DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIP 611
           +       ++ A  +   M   GF P   +   L+      G  +EA  L+  +  +G  
Sbjct: 322 NAYGRAGLYEDAEKIFKSMQSAGFSPNLKSNMLLLSAYARAGRVEEAEELVSAMERDGTK 381

Query: 612 HDVLLYNTILKKACEKGRIDVIEFIIEQMHQN---KVQPDPSTCHFVFSGYVNCGFHNSA 668
            D L+YN ++      GR + +E ++ +M ++   + +PD  T + +   Y   GF   A
Sbjct: 382 PDTLIYNALINAYGVSGRHEDMEALLAKMVKSSSKQTKPDIGTYNTLIQVYAQAGFIPKA 441

Query: 669 MEALQVLSMRMLCEEVST 686
            E  Q L+   L  + +T
Sbjct: 442 EELFQGLARLKLVPDATT 459



 Score = 75.9 bits (185), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 80/356 (22%), Positives = 133/356 (37%), Gaps = 52/356 (14%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           AE+L +QMQ  G  P     + F+  +   +  R    + + +++   +P   T   + V
Sbjct: 158 AEELFVQMQKRGYSPGPLACNTFLHVLEDAKEYRRAEALFRDLEKYECEPNIDTYNRMIV 217

Query: 372 ECSKALELDLAEALLDQISRCTNPK---PFSAFLAACDTMDKPERAIKIFAKMRQ-KLRP 427
              KA E   AE L   + R   P     F+A + A         A + F K+++   +P
Sbjct: 218 IYGKAGEPSKAEMLYRSMRRAMCPPNICTFTALMNAFARQGLYREAERYFDKLQEFDYKP 277

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL 487
           D   Y  L   +    +P     +F               M RN      +S   L+ A 
Sbjct: 278 DHYAYNALMEAYSQGGSPAGALEIFQT-------------MQRNGCFPDTVSHNILINAY 324

Query: 488 GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATY 547
           G  G+  +                                A +IFK M++ G  PN  + 
Sbjct: 325 GRAGLYED--------------------------------AEKIFKSMQSAGFSPNLKSN 352

Query: 548 NIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYG---DFDEALNLLDL 604
            +++   +     + A  LVS M RDG  P T+ Y ALI      G   D +  L  +  
Sbjct: 353 MLLLSAYARAGRVEEAEELVSAMERDGTKPDTLIYNALINAYGVSGRHEDMEALLAKMVK 412

Query: 605 VSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYV 660
            S +    D+  YNT+++   + G I   E + + + + K+ PD +T   +  GY 
Sbjct: 413 SSSKQTKPDIGTYNTLIQVYAQAGFIPKAEELFQGLARLKLVPDATTWTALMGGYA 468


>gi|297805766|ref|XP_002870767.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
 gi|297316603|gb|EFH47026.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
          Length = 747

 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 81/348 (23%), Positives = 149/348 (42%), Gaps = 21/348 (6%)

Query: 320 QSLGLQPSSHTYDGFIRAIV-SDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALE 378
           Q+ G  P   +Y+  + A + S R +     V K M Q+ + P   T   L      A  
Sbjct: 161 QAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLQSQVSPNVFTYNILIRGFCLAGN 220

Query: 379 LDLAEALLDQISR---CTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYEL 434
           LD+A    D++ +     N   ++  +     + K +   ++   M  K L P++ +Y +
Sbjct: 221 LDVALRFFDRMEKKGCLPNVVTYNTLIDGYCKLRKIDDGFELLRSMALKGLEPNLISYNV 280

Query: 435 LFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIR 494
           +      +N    EG M       K I+ +  +M +       ++   L+K    EG   
Sbjct: 281 V------INGLCREGRM-------KEISFVLTEMNKRGYSLDEVTYNTLIKGYCKEGNFH 327

Query: 495 ELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI 551
           + +    +      +P   TY +++HS+ +A   +RA E   QM+  G+ PN  TY  ++
Sbjct: 328 QALVMHAEMLRHGLSPSVITYTSLIHSMCKAGNMNRATEFLDQMRVRGLCPNERTYTTLV 387

Query: 552 DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIP 611
           D  S       A  ++  M+ +GF P  +TY ALI      G   +A+ +L+ +  +G+ 
Sbjct: 388 DGFSQKGYMNEAYRVLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKGLT 447

Query: 612 HDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
            DV+ Y+T+L   C    +D    +  +M    ++PD  T   +  G+
Sbjct: 448 PDVVSYSTVLSGFCRSYDVDEALRVKRKMVAKGIKPDTITYSSLIQGF 495



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 121/548 (22%), Positives = 213/548 (38%), Gaps = 78/548 (14%)

Query: 145 IYFLGERYGIYPILPVYNSFLGAC--AKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKL 202
           I  L + +G  P +  YN+ L A   +K +     N+  +++ S+ V  N  TY  L++ 
Sbjct: 156 IVHLSQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLQSQ-VSPNVFTYNILIRG 214

Query: 203 AVWQKNLSAVHEIWEDYIKHYSL-SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGK 261
                NL      ++   K   L ++ +    +  + +LR +   +E L+ M    +   
Sbjct: 215 FCLAGNLDVALRFFDRMEKKGCLPNVVTYNTLIDGYCKLRKIDDGFELLRSMALKGLEPN 274

Query: 262 LY-INRTSEGRLRSSRL-DIPIPLNALPVMKVLRWSFSDVIHAC---GRTQNSGLAEQLM 316
           L   N    G  R  R+ +I   L     M    +S  +V +     G  +     + L+
Sbjct: 275 LISYNVVINGLCREGRMKEISFVLTE---MNKRGYSLDEVTYNTLIKGYCKEGNFHQALV 331

Query: 317 LQMQSL--GLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECS 374
           +  + L  GL PS  TY   I ++     +    E L  M+   L P + T  TL    S
Sbjct: 332 MHAEMLRHGLSPSVITYTSLIHSMCKAGNMNRATEFLDQMRVRGLCPNERTYTTLVDGFS 391

Query: 375 KALELDLAEALLDQ-ISRCTNPK--PFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIR 430
           +   ++ A  +L + I    +P    ++A +       K   AI +   M++K L PD+ 
Sbjct: 392 QKGYMNEAYRVLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKGLTPDVV 451

Query: 431 TYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAE 490
           +Y  + S F      Y+       VD A R+                       + + A+
Sbjct: 452 SYSTVLSGFCR---SYD-------VDEALRVK----------------------RKMVAK 479

Query: 491 GMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIM 550
           G+  + I             TY++++    E + +  A ++F +M   G+PP+  TY  +
Sbjct: 480 GIKPDTI-------------TYSSLIQGFCEQRRTKEACDLFDEMLRVGLPPDEFTYTAL 526

Query: 551 IDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL-DLVSLEG 609
           I+   +    + A  L + MV  G  P  +TY+ LI  L       EA  LL  L   E 
Sbjct: 527 INAYCMEGDLQKAIQLHNEMVEKGVLPDVVTYSVLINGLNKQARTREAKRLLLKLFYEES 586

Query: 610 IPHDVLLYNTI--------------LKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFV 655
           +P DV  +  I              +K  C KG +   + + E M +   +PD +  + +
Sbjct: 587 VPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLEKNHKPDGTAYNVM 646

Query: 656 FSGYVNCG 663
             G+   G
Sbjct: 647 IHGHCRGG 654



 Score = 72.8 bits (177), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 111/500 (22%), Positives = 199/500 (39%), Gaps = 41/500 (8%)

Query: 226 SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMM-GKLYINRTSEGRLRSSRLDIPIPLN 284
           S+F L   V S++RL  +  A   +    A   M G L  N   +  +RS R +I    N
Sbjct: 135 SVFDL--VVKSYSRLCLIDKALSIVHLSQAHGFMPGVLSYNAVLDATIRSKR-NISFAEN 191

Query: 285 ALPVMKVLR-----WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIV 339
               M   +     ++++ +I       N  +A +   +M+  G  P+  TY+  I    
Sbjct: 192 VFKEMLQSQVSPNVFTYNILIRGFCLAGNLDVALRFFDRMEKKGCLPNVVTYNTLIDGYC 251

Query: 340 SDRGLRNGMEVLKIMQQNNLKPQ----DSTIATLSVECSKALELDLAEALLDQISRCTNP 395
             R + +G E+L+ M    L+P     +  I  L  E  +  E+      +++     + 
Sbjct: 252 KLRKIDDGFELLRSMALKGLEPNLISYNVVINGLCRE-GRMKEISFVLTEMNKRGYSLDE 310

Query: 396 KPFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTY-ELLFSL--FGNVN-------- 443
             ++  +          +A+ + A+M R  L P + TY  L+ S+   GN+N        
Sbjct: 311 VTYNTLIKGYCKEGNFHQALVMHAEMLRHGLSPSVITYTSLIHSMCKAGNMNRATEFLDQ 370

Query: 444 ------APYEEG-----NMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGM 492
                  P E       + FSQ         +  +M  N    S ++   L+      G 
Sbjct: 371 MRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLKEMIDNGFSPSVVTYNALINGHCIAGK 430

Query: 493 IRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNI 549
           + + I    D K    TP   +Y+TVL     + +   A+ + ++M   GI P+  TY+ 
Sbjct: 431 MVDAIAVLEDMKEKGLTPDVVSYSTVLSGFCRSYDVDEALRVKRKMVAKGIKPDTITYSS 490

Query: 550 MIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEG 609
           +I      R  K A  L   M+R G  P   TYTALI      GD  +A+ L + +  +G
Sbjct: 491 LIQGFCEQRRTKEACDLFDEMLRVGLPPDEFTYTALINAYCMEGDLQKAIQLHNEMVEKG 550

Query: 610 IPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAM 669
           +  DV+ Y+ ++    ++ R    + ++ ++   +  P   T H +     N  F  S +
Sbjct: 551 VLPDVVTYSVLINGLNKQARTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEF-KSVV 609

Query: 670 EALQVLSMRMLCEEVSTLEE 689
             ++   M+ +  E   + E
Sbjct: 610 SLIKGFCMKGMMTEADQVFE 629



 Score = 62.8 bits (151), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 116/576 (20%), Positives = 216/576 (37%), Gaps = 91/576 (15%)

Query: 75  LLNLGHAHHSL-GADDFFHILNYCARSPDPL-FVMETWRMMEEKEIGLNNKCYLLMMQAL 132
           +++L  AH  + G   +  +L+   RS   + F    ++ M + ++  N   Y ++++  
Sbjct: 156 IVHLSQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLQSQVSPNVFTYNILIRGF 215

Query: 133 CKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKN 192
           C  G L+ A      + E+ G  P +  YN+ +    KL  +      L  M  + +  N
Sbjct: 216 CLAGNLDVALRFFDRM-EKKGCLPNVVTYNTLIDGYCKLRKIDDGFELLRSMALKGLEPN 274

Query: 193 EVTYTELLKLAVWQKNLSAVHEIWEDYIKH-YSLSIFSLRKFVWSFTRLRDLKSAY---- 247
            ++Y  ++     +  +  +  +  +  K  YSL   +    +  + +  +   A     
Sbjct: 275 LISYNVVINGLCREGRMKEISFVLTEMNKRGYSLDEVTYNTLIKGYCKEGNFHQALVMHA 334

Query: 248 ETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQ 307
           E L+H ++ +++                                   +++ +IH+  +  
Sbjct: 335 EMLRHGLSPSVI-----------------------------------TYTSLIHSMCKAG 359

Query: 308 NSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTI- 366
           N   A + + QM+  GL P+  TY   +        +     VLK M  N   P   T  
Sbjct: 360 NMNRATEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLKEMIDNGFSPSVVTYN 419

Query: 367 ATLSVECSKALELDLAEALLDQISRCTNPK--PFSAFLAA-CDTMDKPERAIKIFAKMRQ 423
           A ++  C     +D    L D   +   P    +S  L+  C + D  E A+++  KM  
Sbjct: 420 ALINGHCIAGKMVDAIAVLEDMKEKGLTPDVVSYSTVLSGFCRSYDVDE-ALRVKRKMVA 478

Query: 424 K-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQV----------DSAKRINA--IEMDMAR 470
           K ++PD  TY  L   F       E  ++F ++               INA  +E D+ +
Sbjct: 479 KGIKPDTITYSSLIQGFCEQRRTKEACDLFDEMLRVGLPPDEFTYTALINAYCMEGDLQK 538

Query: 471 NNIQHSHISMKN----------LLKALGAEGMIRE----LIQYFCDSKTPLGTPTYNTVL 516
               H+ +  K           L+  L  +   RE    L++ F +   P    TY+T++
Sbjct: 539 AIQLHNEMVEKGVLPDVVTYSVLINGLNKQARTREAKRLLLKLFYEESVP-SDVTYHTLI 597

Query: 517 H-----------SLVEA----QESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFK 561
                       SL++          A ++F+ M      P+   YN+MI         +
Sbjct: 598 ENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLEKNHKPDGTAYNVMIHGHCRGGDIR 657

Query: 562 SASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDE 597
            A +L   MV+ GF   T+T  AL+K L   G  +E
Sbjct: 658 KAYSLYKEMVKSGFLLHTVTVIALVKTLHKEGKVNE 693



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 64/309 (20%), Positives = 128/309 (41%), Gaps = 33/309 (10%)

Query: 400 AFLAACDTMDKPERAI----KIFAKMRQ-KLRPDIRTYELL---FSLFGNVNAPYEEGNM 451
           ++ A  D   + +R I     +F +M Q ++ P++ TY +L   F L GN++        
Sbjct: 171 SYNAVLDATIRSKRNISFAENVFKEMLQSQVSPNVFTYNILIRGFCLAGNLDVA------ 224

Query: 452 FSQVDSAKRINAIEMDMARNNIQHSHISMKN------LLKALGAEGMIRELIQYFCDSKT 505
               D  ++   +   +  N +   +  ++       LL+++  +G+   LI        
Sbjct: 225 LRFFDRMEKKGCLPNVVTYNTLIDGYCKLRKIDDGFELLRSMALKGLEPNLI-------- 276

Query: 506 PLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASA 565
                +YN V++ L           +  +M   G   +  TYN +I        F  A  
Sbjct: 277 -----SYNVVINGLCREGRMKEISFVLTEMNKRGYSLDEVTYNTLIKGYCKEGNFHQALV 331

Query: 566 LVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKAC 625
           + + M+R G  P  +TYT+LI  +   G+ + A   LD + + G+  +   Y T++    
Sbjct: 332 MHAEMLRHGLSPSVITYTSLIHSMCKAGNMNRATEFLDQMRVRGLCPNERTYTTLVDGFS 391

Query: 626 EKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVS 685
           +KG ++    ++++M  N   P   T + + +G+   G    A+  L+ +  + L  +V 
Sbjct: 392 QKGYMNEAYRVLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKGLTPDVV 451

Query: 686 TLEEKRSDF 694
           +     S F
Sbjct: 452 SYSTVLSGF 460


>gi|225423724|ref|XP_002276864.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g35130-like [Vitis vinifera]
          Length = 587

 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 79/343 (23%), Positives = 149/343 (43%), Gaps = 21/343 (6%)

Query: 351 LKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDK 410
           L++++   +  +D+    L   C+  L L+ AEA+  ++ +   P     + A  D + K
Sbjct: 192 LELLEARCVPTEDTYALLLKAYCTSGL-LEKAEAVFAEMRKYGFPPSAVVYNAYIDGLMK 250

Query: 411 ---PERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM 466
               ++A++IF +M R + +P   TY +L +L+G  +  Y    +F ++ S K       
Sbjct: 251 GGDTQKAVEIFERMKRDRCQPSTATYTMLINLYGKASKSYMALKVFHEMRSQK------- 303

Query: 467 DMARNNIQHSHISMKNLLKALGAEGM---IRELIQYFCDSKTPLGTPTYNTVLHSLVEAQ 523
              + NI     +   L+ A   EG+     E+ +   ++        YN ++ +   A 
Sbjct: 304 --CKPNI----CTFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALMEAYSRAG 357

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
             + A EIF  M+  G  P+ A+YNIM+D        + A A+  +M R G  P   ++ 
Sbjct: 358 FPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEVMKRLGITPTMKSHM 417

Query: 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
            L+      G   +   +++ +   GI  D  + N++L      G+ + +E ++  M + 
Sbjct: 418 LLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEKMEEVLTAMEKG 477

Query: 644 KVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
               D ST + + + Y   GF     E  + L  R L  +V T
Sbjct: 478 PYPADISTYNILINIYGRAGFFARMEELFRSLPARNLIPDVVT 520



 Score = 65.9 bits (159), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 80/370 (21%), Positives = 145/370 (39%), Gaps = 36/370 (9%)

Query: 308 NSGL---AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDS 364
            SGL   AE +  +M+  G  PS+  Y+ +I  ++     +  +E+ + M+++  +P  +
Sbjct: 215 TSGLLEKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTA 274

Query: 365 TIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDKPERAIKIFAK 420
           T   L     KA +  +A  +  ++ R    KP    F+A + A       E+A +IF +
Sbjct: 275 TYTMLINLYGKASKSYMALKVFHEM-RSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQ 333

Query: 421 MRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFS----------------QVDSAKRIN- 462
           +++  L PD+  Y  L   +     PY    +FS                 VD+  R   
Sbjct: 334 LQEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGL 393

Query: 463 -----AIEMDMARNNIQHSHISMKNLLKALGAEGMI---RELIQYFCDSKTPLGTPTYNT 514
                A+   M R  I  +  S   LL A    G +    E++     S     T   N+
Sbjct: 394 HEDAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNS 453

Query: 515 VLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDG 574
           +L+      +  +  E+   M+    P + +TYNI+I+       F     L   +    
Sbjct: 454 MLNLYGRLGQFEKMEEVLTAMEKGPYPADISTYNILINIYGRAGFFARMEELFRSLPARN 513

Query: 575 FYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG-RIDVI 633
             P  +T+T+ I        ++  L + + +   G   D      +L  AC  G +I  +
Sbjct: 514 LIPDVVTWTSRIGAYSRRKQYNRCLEVFEEMIDAGCYPDGGTAKVLL-SACSNGDQIQEV 572

Query: 634 EFIIEQMHQN 643
             +I  MH++
Sbjct: 573 TTVIRTMHKD 582



 Score = 53.9 bits (128), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 56/291 (19%), Positives = 124/291 (42%), Gaps = 30/291 (10%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNG-MEVLKI 353
           +F+ +++A  R      AE++  Q+Q  GL+P  + Y+  + A  S  G   G  E+  +
Sbjct: 310 TFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALMEA-YSRAGFPYGAAEIFSL 368

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDK 410
           MQ    +P  ++   +     +A   + A+A+ + + R       K     L+A     K
Sbjct: 369 MQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGK 428

Query: 411 PERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
             +  +I  +M +  ++PD      + +L+G +   +E+     +V +A        D++
Sbjct: 429 VAKCEEIVNQMHKSGIKPDTFVLNSMLNLYGRL-GQFEK---MEEVLTAMEKGPYPADIS 484

Query: 470 RNNI-------QHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEA 522
             NI             M+ L ++L A  +I +++             T+ + + +    
Sbjct: 485 TYNILINIYGRAGFFARMEELFRSLPARNLIPDVV-------------TWTSRIGAYSRR 531

Query: 523 QESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRD 573
           ++ +R +E+F++M   G  P+  T  +++  CS     +  + ++  M +D
Sbjct: 532 KQYNRCLEVFEEMIDAGCYPDGGTAKVLLSACSNGDQIQEVTTVIRTMHKD 582



 Score = 39.7 bits (91), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 25/110 (22%), Positives = 46/110 (41%)

Query: 542 PNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNL 601
           P+   YN++ID       +K A +    ++     P   TY  L+K     G  ++A  +
Sbjct: 166 PDVICYNLLIDAYGQKSLYKKAESTYLELLEARCVPTEDTYALLLKAYCTSGLLEKAEAV 225

Query: 602 LDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
              +   G P   ++YN  +    + G       I E+M +++ QP  +T
Sbjct: 226 FAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTAT 275


>gi|449489553|ref|XP_004158346.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g55840-like [Cucumis sativus]
          Length = 1079

 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 82/379 (21%), Positives = 167/379 (44%), Gaps = 26/379 (6%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           S++ +I+   +    G+A ++  +M  L L P+  TY+  I     +      + +L +M
Sbjct: 282 SYNTLINGFVKEGKIGVATRVFNEMIELNLSPNLITYNILINGYCINGNFEEALRLLDVM 341

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQIS------RCTNPKPFSAFLAACDTM 408
           + N+++P + TI TL     K+ + D+A  +L++ S       C +       L     +
Sbjct: 342 EANDVRPNEVTIGTLLNGLYKSAKFDVARNILERYSINRTSLNCISHTVMIDGLCRNGLL 401

Query: 409 DKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMD 467
           D+   A ++  +M +  + PDI T+ +L              N F +V +  +   +   
Sbjct: 402 DE---AFQLLIEMCKDGVYPDIITFSVLI-------------NGFCKVGNLNKAKEVMSK 445

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCD---SKTPLGTPTYNTVLHSLVEAQE 524
           + R     +++    L+      G + E ++++     +       T N+++ SL E  +
Sbjct: 446 IYREGFVPNNVIFSTLIYNSCKVGNVYEGMKFYAAMNLNGQNADNFTCNSLVASLCENGK 505

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
              A E    +   G+ PN+ T++ +I+  + +     A ++   M+  G +P   TY +
Sbjct: 506 LVEAEEFLHHISRIGLVPNSVTFDCIINGYANVGDGSGAFSVFDKMISCGHHPSPFTYGS 565

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
           L+K+L    +F EA  LL  +    +  D + YNT++ +  + G +     + E+M QN 
Sbjct: 566 LLKVLCKGQNFWEARKLLKKLHCIPLAVDTISYNTLIVEISKSGNLLEAVRLFEEMIQNN 625

Query: 645 VQPDPSTCHFVFSGYVNCG 663
           + PD  T   + SG +  G
Sbjct: 626 ILPDSYTYTCILSGLIREG 644



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 142/693 (20%), Positives = 253/693 (36%), Gaps = 163/693 (23%)

Query: 110 WRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACA 169
           ++ M    +  N   + +++  LC  G L++A N++  + ER G  P +  YN+ L  C 
Sbjct: 163 FKQMLTSRVCPNVSSFNILISVLCVQGKLKKAVNILTMM-ERNGYVPTIVSYNTLLSWCC 221

Query: 170 K----------LHSM----VHANLC---------------------LDLMDSRMVGKNEV 194
           K          +H M    + A++C                     L  M ++M+  NEV
Sbjct: 222 KKGRFKFALVLIHHMECKGIQADVCTYNMFIDSLCRNSRSAQGYLVLKKMRNKMITPNEV 281

Query: 195 TYTELLKLAVWQKNLSAVHEIWEDYIK-HYSLSIFSLRKFVWSFT---------RLRDLK 244
           +Y  L+   V +  +     ++ + I+ + S ++ +    +  +          RL D+ 
Sbjct: 282 SYNTLINGFVKEGKIGVATRVFNEMIELNLSPNLITYNILINGYCINGNFEEALRLLDVM 341

Query: 245 SA-----------------YETLQHMVALAMMGKLYINRTS----------EGRLRSSRL 277
            A                 Y++ +  VA  ++ +  INRTS          +G  R+  L
Sbjct: 342 EANDVRPNEVTIGTLLNGLYKSAKFDVARNILERYSINRTSLNCISHTVMIDGLCRNGLL 401

Query: 278 DIPIPL-------NALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHT 330
           D    L          P +     +FS +I+   +  N   A+++M ++   G  P++  
Sbjct: 402 DEAFQLLIEMCKDGVYPDI----ITFSVLINGFCKVGNLNKAKEVMSKIYREGFVPNNVI 457

Query: 331 YDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQIS 390
           +   I        +  GM+    M  N     + T  +L     +  +L  AE  L  IS
Sbjct: 458 FSTLIYNSCKVGNVYEGMKFYAAMNLNGQNADNFTCNSLVASLCENGKLVEAEEFLHHIS 517

Query: 391 R---CTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPY 446
           R     N   F   +     +     A  +F KM      P   TY  L  +       +
Sbjct: 518 RIGLVPNSVTFDCIINGYANVGDGSGAFSVFDKMISCGHHPSPFTYGSLLKVLCKGQNFW 577

Query: 447 EEGNMFSQ-----------------VDSAKRINAIEM-----DMARNNIQHSHISMKNLL 484
           E   +  +                 V+ +K  N +E      +M +NNI     +   +L
Sbjct: 578 EARKLLKKLHCIPLAVDTISYNTLIVEISKSGNLLEAVRLFEEMIQNNILPDSYTYTCIL 637

Query: 485 KALGAEG-------MIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKT 537
             L  EG        +  L+Q        L +  Y   +  L +A +S  A+ +FK+M+ 
Sbjct: 638 SGLIREGRLVCAFIFLGRLMQ---KEILTLNSIVYTCFIDGLFKAGQSKAALYLFKEMEE 694

Query: 538 CGIP-----------------------------------PNAATYNIMIDCCS----IIR 558
            G+                                    PN  T+NI++   S    I+ 
Sbjct: 695 KGLSLDLIALNSITDGYSRMGKVFSASSLISKTRNKNVIPNLTTFNILLHGYSRGQDIMS 754

Query: 559 CFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYN 618
           CFK    L ++M R GF+P  +TY +LI  L ++G  +  + +L +   E    D L +N
Sbjct: 755 CFK----LYNLMRRSGFFPNRLTYHSLILGLCNHGMLELGIKMLKMFIAESSTIDDLTFN 810

Query: 619 TILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
            +++K CE   +D +  +   M   +V  D  T
Sbjct: 811 MLIRKCCEINDLDKVIDLTHNMEVFRVSLDKDT 843



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 86/184 (46%), Gaps = 3/184 (1%)

Query: 483 LLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCG 539
           L++    +GM+   +  F         P   T N ++ S+V+   +H     FKQM T  
Sbjct: 111 LIRVYLRQGMVGHAVNTFSSMLIRGFKPSVYTCNMIMASMVKNCRAHLVWXFFKQMLTSR 170

Query: 540 IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEAL 599
           + PN +++NI+I    +    K A  +++MM R+G+ P  ++Y  L+      G F  AL
Sbjct: 171 VCPNVSSFNILISVLCVQGKLKKAVNILTMMERNGYVPTIVSYNTLLSWCCKKGRFKFAL 230

Query: 600 NLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
            L+  +  +GI  DV  YN  +   C   R      ++++M    + P+  + + + +G+
Sbjct: 231 VLIHHMECKGIQADVCTYNMFIDSLCRNSRSAQGYLVLKKMRNKMITPNEVSYNTLINGF 290

Query: 660 VNCG 663
           V  G
Sbjct: 291 VKEG 294



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 72/373 (19%), Positives = 153/373 (41%), Gaps = 49/373 (13%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           S++ ++  C +      A  L+  M+  G+Q    TY+ FI ++  +     G  VLK M
Sbjct: 212 SYNTLLSWCCKKGRFKFALVLIHHMECKGIQADVCTYNMFIDSLCRNSRSAQGYLVLKKM 271

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERA 414
           +   + P + +  TL                             + F+       K   A
Sbjct: 272 RNKMITPNEVSYNTL----------------------------INGFVKE----GKIGVA 299

Query: 415 IKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNI 473
            ++F +M +  L P++ TY +L + +  +N  +EE      V            M  N++
Sbjct: 300 TRVFNEMIELNLSPNLITYNILINGYC-INGNFEEALRLLDV------------MEANDV 346

Query: 474 QHSHISMKNLLKALGAEG---MIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAME 530
           + + +++  LL  L       + R +++ +  ++T L   ++  ++  L        A +
Sbjct: 347 RPNEVTIGTLLNGLYKSAKFDVARNILERYSINRTSLNCISHTVMIDGLCRNGLLDEAFQ 406

Query: 531 IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590
           +  +M   G+ P+  T++++I+    +     A  ++S + R+GF P  + ++ LI    
Sbjct: 407 LLIEMCKDGVYPDIITFSVLINGFCKVGNLNKAKEVMSKIYREGFVPNNVIFSTLIYNSC 466

Query: 591 DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650
             G+  E +     ++L G   D    N+++   CE G++   E  +  + +  + P+  
Sbjct: 467 KVGNVYEGMKFYAAMNLNGQNADNFTCNSLVASLCENGKLVEAEEFLHHISRIGLVPNSV 526

Query: 651 TCHFVFSGYVNCG 663
           T   + +GY N G
Sbjct: 527 TFDCIINGYANVG 539



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 77/162 (47%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           +YNT+++  V+  +   A  +F +M    + PN  TYNI+I+   I   F+ A  L+ +M
Sbjct: 282 SYNTLINGFVKEGKIGVATRVFNEMIELNLSPNLITYNILINGYCINGNFEEALRLLDVM 341

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
             +   P  +T   L+  L     FD A N+L+  S+     + + +  ++   C  G +
Sbjct: 342 EANDVRPNEVTIGTLLNGLYKSAKFDVARNILERYSINRTSLNCISHTVMIDGLCRNGLL 401

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEAL 672
           D    ++ +M ++ V PD  T   + +G+   G  N A E +
Sbjct: 402 DEAFQLLIEMCKDGVYPDIITFSVLINGFCKVGNLNKAKEVM 443



 Score = 55.8 bits (133), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 104/579 (17%), Positives = 225/579 (38%), Gaps = 60/579 (10%)

Query: 120 LNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANL 179
           LN   + +M+  LC+ G L+EA  L+  + +  G+YP +  ++  +    K+ ++  A  
Sbjct: 383 LNCISHTVMIDGLCRNGLLDEAFQLLIEMCKD-GVYPDIITFSVLINGFCKVGNLNKAKE 441

Query: 180 CLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSI-------FSLRK 232
            +  +       N V ++ L+       N   V  ++E    + ++++       F+   
Sbjct: 442 VMSKIYREGFVPNNVIFSTLIY------NSCKVGNVYEGMKFYAAMNLNGQNADNFTCNS 495

Query: 233 FVWSFTRLRDLKSAYETLQHMVALAMMGK-----LYIN---RTSEGRLRSSRLDIPIPLN 284
            V S      L  A E L H+  + ++         IN      +G    S  D  I   
Sbjct: 496 LVASLCENGKLVEAEEFLHHISRIGLVPNSVTFDCIINGYANVGDGSGAFSVFDKMISCG 555

Query: 285 ALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGL 344
             P      +++  ++    + QN   A +L+ ++  + L   + +Y+  I  I     L
Sbjct: 556 HHPS----PFTYGSLLKVLCKGQNFWEARKLLKKLHCIPLAVDTISYNTLIVEISKSGNL 611

Query: 345 RNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR----CTNPKPFSA 400
              + + + M QNN+ P   T   +     +   L  A   L ++ +      N   ++ 
Sbjct: 612 LEAVRLFEEMIQNNILPDSYTYTCILSGLIREGRLVCAFIFLGRLMQKEILTLNSIVYTC 671

Query: 401 FLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAK 459
           F+       + + A+ +F +M +K L  D+     +   +  +   +   ++ S+  +  
Sbjct: 672 FIDGLFKAGQSKAALYLFKEMEEKGLSLDLIALNSITDGYSRMGKVFSASSLISKTRNKN 731

Query: 460 RI-NAIEMD---------------------MARNNIQHSHISMKNLLKALGAEGMIR--- 494
            I N    +                     M R+    + ++  +L+  L   GM+    
Sbjct: 732 VIPNLTTFNILLHGYSRGQDIMSCFKLYNLMRRSGFFPNRLTYHSLILGLCNHGMLELGI 791

Query: 495 ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCC 554
           ++++ F    + +   T+N ++    E  +  + +++   M+   +  +  T   + D  
Sbjct: 792 KMLKMFIAESSTIDDLTFNMLIRKCCEINDLDKVIDLTHNMEVFRVSLDKDTQKAVTDV- 850

Query: 555 SIIRCFKSASALVSM--MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPH 612
            ++R   S +  V M  M++ GF P +  Y  ++K +   GD   A  L D +   GI  
Sbjct: 851 -LVRRMVSQNYFVFMHEMLKKGFIPTSKQYCTMMKRMCRVGDIQGAFKLKDQMVALGISL 909

Query: 613 DVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
           D      +++     G+I+   +I+++M + K  P  ST
Sbjct: 910 DDAAECAMVRGLALCGKIEEAMWILQRMLRMKKIPTTST 948



 Score = 45.8 bits (107), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 32/140 (22%), Positives = 62/140 (44%)

Query: 512  YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
            Y T++  +    +   A ++  QM   GI  + A    M+   ++    + A  ++  M+
Sbjct: 879  YCTMMKRMCRVGDIQGAFKLKDQMVALGISLDDAAECAMVRGLALCGKIEEAMWILQRML 938

Query: 572  RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
            R    P T T+T L+ +     +F EA NL  L+    +  D++ YN ++   C  G + 
Sbjct: 939  RMKKIPTTSTFTTLMHVFCKKDNFKEAHNLKILMEHYRVKLDIVAYNVLISACCANGDVI 998

Query: 632  VIEFIIEQMHQNKVQPDPST 651
                  E++ Q  + P+ +T
Sbjct: 999  TALDFYEEIKQKGLLPNMTT 1018



 Score = 45.1 bits (105), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 39/181 (21%), Positives = 77/181 (42%), Gaps = 7/181 (3%)

Query: 483 LLKALGAEGMIRELIQYFCDSKTPLGTPT---YNTVLHSLVEAQESHRAMEIFKQMKTCG 539
           L+  L  +G +++ +      +     PT   YNT+L    +      A+ +   M+  G
Sbjct: 181 LISVLCVQGKLKKAVNILTMMERNGYVPTIVSYNTLLSWCCKKGRFKFALVLIHHMECKG 240

Query: 540 IPPNAATYNIMIDCCSIIRCFKSASALVSM--MVRDGFYPQTMTYTALIKILLDYGDFDE 597
           I  +  TYN+ ID  S+ R  +SA   + +  M      P  ++Y  LI   +  G    
Sbjct: 241 IQADVCTYNMFID--SLCRNSRSAQGYLVLKKMRNKMITPNEVSYNTLINGFVKEGKIGV 298

Query: 598 ALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFS 657
           A  + + +    +  +++ YN ++   C  G  +    +++ M  N V+P+  T   + +
Sbjct: 299 ATRVFNEMIELNLSPNLITYNILINGYCINGNFEEALRLLDVMEANDVRPNEVTIGTLLN 358

Query: 658 G 658
           G
Sbjct: 359 G 359


>gi|225454807|ref|XP_002274300.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At4g17915-like [Vitis vinifera]
          Length = 457

 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 79/372 (21%), Positives = 152/372 (40%), Gaps = 61/372 (16%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQ----DSTIA 367
           AE +++    LGL P   TY+  + A     G+     V+  M++  + P     +S IA
Sbjct: 26  AEAVVIDGIRLGLLPDVVTYNTLLSAYSRFVGIDAAYSVIHRMKEAGISPDVITYNSLIA 85

Query: 368 TLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRP 427
             +  C  +  LDL E +L                                   R  +RP
Sbjct: 86  AATKRCLLSRSLDLFEEML-----------------------------------RTGIRP 110

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQV------DSAKRINAIEMDMARNNIQHSHISMK 481
           D+ +Y  L   F  +  P E   +F  +       S+   N +   +  N      +S  
Sbjct: 111 DVWSYNSLMHCFFKLGKPDEANRVFQDIILTNLLPSSSTFNIMINGLCNNGYTGYALS-- 168

Query: 482 NLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIP 541
            L + L  +G + EL+             TYN +++ L ++++ + A  I +++   G  
Sbjct: 169 -LYRYLQRQGFVPELV-------------TYNILINGLCKSRKLNAARRILRELGESGNV 214

Query: 542 PNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNL 601
           P+A TY  ++ CC   R F+    + S M   G+     +Y A+I  L   G  +EA ++
Sbjct: 215 PDAITYTTVMKCCFRSRQFEQGFEIFSEMKSKGYAFDAFSYCAVIAALTKTGRLEEANDI 274

Query: 602 LDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVN 661
           ++ ++   I  D++ YNT++   C  G+++    +++++ ++ ++ D  T   +  G   
Sbjct: 275 MEQMARSDIDLDIVSYNTVMNLYCRNGKLEATYKLLDEIEEHGLECDEYTHTILIDGLCK 334

Query: 662 CGFHNSAMEALQ 673
            G    A+  L+
Sbjct: 335 AGNVEGALRHLK 346



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 113/501 (22%), Positives = 205/501 (40%), Gaps = 71/501 (14%)

Query: 127 LMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDS 186
           + + +LCK G LE+A  ++   G R G+ P +  YN+ L A ++   +  A   +  M  
Sbjct: 12  ICIASLCKVGQLEKAEAVV-IDGIRLGLLPDVVTYNTLLSAYSRFVGIDAAYSVIHRMKE 70

Query: 187 RMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSA 246
             +  + +TY  L+  A  +  LS   +++E+ ++        +R  VWS          
Sbjct: 71  AGISPDVITYNSLIAAATKRCLLSRSLDLFEEMLRT------GIRPDVWS---------- 114

Query: 247 YETLQHMVALAMMGKL-YINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGR 305
           Y +L H      +GK    NR  +        DI I  N LP       +F+ +I+    
Sbjct: 115 YNSLMH--CFFKLGKPDEANRVFQ--------DI-ILTNLLPSSS----TFNIMINGLCN 159

Query: 306 TQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDST 365
              +G A  L   +Q  G  P   TY+  I  +   R L     +L+ + ++   P   T
Sbjct: 160 NGYTGYALSLYRYLQRQGFVPELVTYNILINGLCKSRKLNAARRILRELGESGNVPDAIT 219

Query: 366 IATLSVECSKALELDLAEALLDQISRCTNPKPFSAF-----LAACDTMDKPERAIKIFAK 420
             T+   C ++ + +    +  ++   +    F AF     +AA     + E A  I  +
Sbjct: 220 YTTVMKCCFRSRQFEQGFEIFSEMK--SKGYAFDAFSYCAVIAALTKTGRLEEANDIMEQ 277

Query: 421 M-RQKLRPDIRTYELLFSLF---GNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHS 476
           M R  +  DI +Y  + +L+   G + A Y+   +  +++     + +E D      +++
Sbjct: 278 MARSDIDLDIVSYNTVMNLYCRNGKLEATYK---LLDEIEE----HGLECD------EYT 324

Query: 477 H-ISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTY----NTVLHSLVEAQESHRAMEI 531
           H I +  L KA   EG +R L      + T +G  +     N V+  L +  +   A+++
Sbjct: 325 HTILIDGLCKAGNVEGALRHL-----KNMTKMGFDSTLVAQNCVIDGLCKVGQLDHAIKM 379

Query: 532 FKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLD 591
           F  M+      ++ TY+ M+      R ++ AS L+   +R G         ++I  L  
Sbjct: 380 FASMEV----KDSFTYSSMVHNLCKARRYRHASRLLLACLRGGMKILRANQRSVIDGLCY 435

Query: 592 YGDFDEALNLLDLVSLEGIPH 612
            G   EA  L   + L  I H
Sbjct: 436 SGYTSEARRLKSKIRLARILH 456



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/178 (21%), Positives = 75/178 (42%)

Query: 509 TPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVS 568
           T   N  + SL +  +  +A  +       G+ P+  TYN ++   S      +A +++ 
Sbjct: 7   TKLLNICIASLCKVGQLEKAEAVVIDGIRLGLLPDVVTYNTLLSAYSRFVGIDAAYSVIH 66

Query: 569 MMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
            M   G  P  +TY +LI           +L+L + +   GI  DV  YN+++    + G
Sbjct: 67  RMKEAGISPDVITYNSLIAAATKRCLLSRSLDLFEEMLRTGIRPDVWSYNSLMHCFFKLG 126

Query: 629 RIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           + D    + + +    + P  ST + + +G  N G+   A+   + L  +    E+ T
Sbjct: 127 KPDEANRVFQDIILTNLLPSSSTFNIMINGLCNNGYTGYALSLYRYLQRQGFVPELVT 184



 Score = 50.4 bits (119), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 67/167 (40%), Gaps = 2/167 (1%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASA-LVSM 569
           TYNT+L +         A  +  +MK  GI P+  TYN +I   +  RC  S S  L   
Sbjct: 44  TYNTLLSAYSRFVGIDAAYSVIHRMKEAGISPDVITYNSLI-AAATKRCLLSRSLDLFEE 102

Query: 570 MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
           M+R G  P   +Y +L+      G  DEA  +   + L  +      +N ++   C  G 
Sbjct: 103 MLRTGIRPDVWSYNSLMHCFFKLGKPDEANRVFQDIILTNLLPSSSTFNIMINGLCNNGY 162

Query: 630 IDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
                 +   + +    P+  T + + +G       N+A   L+ L 
Sbjct: 163 TGYALSLYRYLQRQGFVPELVTYNILINGLCKSRKLNAARRILRELG 209


>gi|297800104|ref|XP_002867936.1| hypothetical protein ARALYDRAFT_492917 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297313772|gb|EFH44195.1| hypothetical protein ARALYDRAFT_492917 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 817

 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 122/561 (21%), Positives = 222/561 (39%), Gaps = 67/561 (11%)

Query: 119 GLNNKCYLLM--MQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVH 176
           G++   YL    + A CKGG +EEA  L   + E  G+ P +  YN+ +           
Sbjct: 247 GVSPDVYLFTTAINAFCKGGKVEEAIELFSKM-EEAGVVPNVVTYNTVIDGLGMSGRYDE 305

Query: 177 ANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWS 236
           A +  + M  R V    +TY+ L+K                                   
Sbjct: 306 AFMFKEKMVERGVEPTLITYSILVK----------------------------------G 331

Query: 237 FTRLRDLKSAYETLQHMVALAMMGKLYI-NRTSEGRLRSSRLDIPIPLNALPVMKVLRWS 295
            T+ + +  AY  L+ M        + + N   +  + +  L+  I +  L V K L  +
Sbjct: 332 LTKAKRIGDAYCVLKEMTEKGFPPNVIVYNNLIDSLIEAGSLNKAIEIKDLMVSKGLSLT 391

Query: 296 ---FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
              ++ +I    ++  + +AE+L+ +M S+G   +  ++   I  + S     + +  + 
Sbjct: 392 SSTYNTLIKGYCKSGQADIAERLLKEMLSIGFNVNQGSFTSVICLLCSHHMFDSALRFVG 451

Query: 353 IMQQNNLKPQDSTIATL-SVEC-----SKALELDLAEALLDQISRCTNPKPFSAFLAACD 406
            M   N+ P    + TL S  C     SKA+EL L    L++     + K  +A L    
Sbjct: 452 EMLLRNMSPGGGLLTTLISGLCKHGKHSKAVELWLK--FLNK-GFLVDTKTSNALLHGLC 508

Query: 407 TMDKPERAIKIFAK-MRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIE 465
              K E   +I  + + +    D  +Y  L S     N   +E  MF             
Sbjct: 509 EAGKLEEGFRIQKEILGRGFVMDRVSYNTLISGCCG-NKKLDEAFMFMD----------- 556

Query: 466 MDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEA 522
            +M +  ++  + +   L++ L     + E IQ++ D K     P   TY+ ++    +A
Sbjct: 557 -EMVKKGLKPDNYTYSILIRGLLNMNKVEEAIQFWGDCKRNGMIPDVYTYSVMIDGCCKA 615

Query: 523 QESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTY 582
           + +    ++F +M +  + PN   YN +I           A  L   M   G  P + TY
Sbjct: 616 ERTEEGQKLFDEMMSNNLQPNTVVYNHLIGAYCRSGRLSMALELREDMKHKGISPNSATY 675

Query: 583 TALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642
           T+LIK +      +EA  LL+ + +EG+  +V  Y  ++    + G++  +E ++ +MH 
Sbjct: 676 TSLIKGMSIISRVEEAKLLLEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHS 735

Query: 643 NKVQPDPSTCHFVFSGYVNCG 663
             V P+  T   +  GY   G
Sbjct: 736 KNVHPNKITYTVMIGGYARDG 756



 Score = 77.0 bits (188), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 102/487 (20%), Positives = 182/487 (37%), Gaps = 61/487 (12%)

Query: 194 VTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHM 253
           +  T L++   +QK   A H +     K  S  ++     + +F +   ++ A E    M
Sbjct: 223 ILLTSLVRATEFQKCCEAFHVVC----KGVSPDVYLFTTAINAFCKGGKVEEAIELFSKM 278

Query: 254 VALAMMGKLYI-NRTSEGRLRSSRLDIPIPLNALPVMKVLR---WSFSDVIHACGRTQNS 309
               ++  +   N   +G   S R D         V + +     ++S ++    + +  
Sbjct: 279 EEAGVVPNVVTYNTVIDGLGMSGRYDEAFMFKEKMVERGVEPTLITYSILVKGLTKAKRI 338

Query: 310 GLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL 369
           G A  ++ +M   G  P+   Y+  I +++    L   +E+  +M    L    ST  TL
Sbjct: 339 GDAYCVLKEMTEKGFPPNVIVYNNLIDSLIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTL 398

Query: 370 SVECSKALELDLAEALLDQ---ISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLR 426
                K+ + D+AE LL +   I    N   F++ +                        
Sbjct: 399 IKGYCKSGQADIAERLLKEMLSIGFNVNQGSFTSVIC----------------------- 435

Query: 427 PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKA 486
                  LL S            +MF   DSA R      +M   N+      +  L+  
Sbjct: 436 -------LLCS-----------HHMF---DSALRFVG---EMLLRNMSPGGGLLTTLISG 471

Query: 487 L---GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPN 543
           L   G      EL   F +    + T T N +LH L EA +      I K++   G   +
Sbjct: 472 LCKHGKHSKAVELWLKFLNKGFLVDTKTSNALLHGLCEAGKLEEGFRIQKEILGRGFVMD 531

Query: 544 AATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLD 603
             +YN +I  C   +    A   +  MV+ G  P   TY+ LI+ LL+    +EA+    
Sbjct: 532 RVSYNTLISGCCGNKKLDEAFMFMDEMVKKGLKPDNYTYSILIRGLLNMNKVEEAIQFWG 591

Query: 604 LVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
                G+  DV  Y+ ++   C+  R +  + + ++M  N +QP+    + +   Y   G
Sbjct: 592 DCKRNGMIPDVYTYSVMIDGCCKAERTEEGQKLFDEMMSNNLQPNTVVYNHLIGAYCRSG 651

Query: 664 FHNSAME 670
             + A+E
Sbjct: 652 RLSMALE 658



 Score = 45.1 bits (105), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 58/132 (43%), Gaps = 3/132 (2%)

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSM-MVRDGFYPQTMTYTALI 586
           A+++F  +   G+ P+  T NI++   S++R  +      +  +V  G  P    +T  I
Sbjct: 202 ALDVFPVLANKGMFPSKTTCNILLT--SLVRATEFQKCCEAFHVVCKGVSPDVYLFTTAI 259

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
                 G  +EA+ L   +   G+  +V+ YNT++      GR D      E+M +  V+
Sbjct: 260 NAFCKGGKVEEAIELFSKMEEAGVVPNVVTYNTVIDGLGMSGRYDEAFMFKEKMVERGVE 319

Query: 647 PDPSTCHFVFSG 658
           P   T   +  G
Sbjct: 320 PTLITYSILVKG 331


>gi|359473390|ref|XP_002268680.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Vitis vinifera]
          Length = 748

 Score = 91.7 bits (226), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 86/370 (23%), Positives = 158/370 (42%), Gaps = 16/370 (4%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           S+S VI+   +        +L+ +MQ  GL+P+ +TY+G I  +     +     VL+ M
Sbjct: 290 SYSTVINGYCQVGELQRVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREM 349

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAA----CDTMDK 410
               + P      TL     K   +  A  L D++ +      F  + A     C T  +
Sbjct: 350 ISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQT-GR 408

Query: 411 PERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
              A K+F +M  ++L PD  TY  L      ++   +EG M        ++  ++M + 
Sbjct: 409 VMEADKLFHEMVCKRLEPDEVTYTAL------IDGYCKEGKMKEAFSLHNQM--LQMGLT 460

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAM 529
            N + ++  ++ + L   G      EL+   C     L   TYN++++ L +A    +A+
Sbjct: 461 PNIVTYT--ALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAV 518

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
           ++ K M+  G  P+A TY  ++D     R    A  L+  M+     P  +T+  L+   
Sbjct: 519 KLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGF 578

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649
              G  ++   LL  +  +GI  +   YN+++K+ C +  +     I   M    V PD 
Sbjct: 579 CMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDG 638

Query: 650 STCHFVFSGY 659
           +T + +  G+
Sbjct: 639 NTYNILIKGH 648



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 78/347 (22%), Positives = 137/347 (39%), Gaps = 24/347 (6%)

Query: 295 SFSDVIHACGRTQNSGL--AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
           +++ VI  CG  Q   +  A++L  +M    L+P   TY   I     +  ++    +  
Sbjct: 395 TYTAVI--CGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHN 452

Query: 353 IMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT---NPKPFSAFLAACDTMD 409
            M Q  L P   T   L+    K  E+D A  LL ++ R     N   +++ +       
Sbjct: 453 QMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAG 512

Query: 410 KPERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
             ++A+K+   M      PD  TY  L              + + +     R + +   M
Sbjct: 513 NIDQAVKLMKDMEVAGFHPDAVTYTTLM-------------DAYCKSREMVRAHELLRQM 559

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQES 525
               +Q + ++   L+      GM+ +   L+++  +        TYN+++         
Sbjct: 560 LDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNM 619

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
               EI++ M   G+ P+  TYNI+I      R  K A  L   MV  GF     +Y AL
Sbjct: 620 RATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNLTVSSYNAL 679

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDV 632
           IK       F EA  L + +  EG+  D  +YN       ++G++++
Sbjct: 680 IKGFYKRKKFLEARELFEQMRREGLVADREIYNIFADINYDEGKMEL 726



 Score = 66.6 bits (161), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 80/176 (45%), Gaps = 4/176 (2%)

Query: 509 TPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVS 568
           T +YN + HSL +      A ++  QM+  G  P+  +Y+ +I+    +   +    L+ 
Sbjct: 253 TASYNIITHSLCQLGRVVEAHQLLLQMELRGCIPDVISYSTVINGYCQVGELQRVLKLIE 312

Query: 569 MMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
            M   G  P   TY  +I +L   G   EA  +L  +  EGI  D ++Y T++   C+ G
Sbjct: 313 EMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLG 372

Query: 629 RIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEV 684
            +     + ++M + K+ PD  T   V  G    G     MEA ++    M+C+ +
Sbjct: 373 NVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTG---RVMEADKLFH-EMVCKRL 424



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 76/332 (22%), Positives = 134/332 (40%), Gaps = 24/332 (7%)

Query: 377 LELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELL 435
           L+++L   + D IS       +S  +     + + +R +K+  +M+ K L+P+  TY  +
Sbjct: 277 LQMELRGCIPDVIS-------YSTVINGYCQVGELQRVLKLIEEMQIKGLKPNPYTYNGV 329

Query: 436 FSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRE 495
             L               +V  A+R+     +M    I    +    L+      G +  
Sbjct: 330 ILLLCKT----------GKVAEAERV---LREMISEGIAPDGVIYTTLIDGFCKLGNVSS 376

Query: 496 LIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID 552
             + F + +    +P   TY  V+  L +      A ++F +M    + P+  TY  +ID
Sbjct: 377 AYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALID 436

Query: 553 CCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPH 612
                   K A +L + M++ G  P  +TYTAL   L   G+ D A  LL  +  +G+  
Sbjct: 437 GYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLEL 496

Query: 613 DVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEAL 672
           ++  YN+++   C+ G ID    +++ M      PD  T   +   Y        A E L
Sbjct: 497 NIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELL 556

Query: 673 QVLSMRMLCEEVSTLEEKRSDFEDLILAEDSE 704
           + +  R L   V T     + F    + ED E
Sbjct: 557 RQMLDRELQPTVVTFNVLMNGFCMSGMLEDGE 588



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/160 (21%), Positives = 74/160 (46%), Gaps = 2/160 (1%)

Query: 528 AMEIFKQMKTCGIPPNAATYNIMI-DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
           A+++F +    G+  N A+YNI+    C + R  ++   L+ M +R G  P  ++Y+ +I
Sbjct: 237 ALKVFVEFPEVGVCWNTASYNIITHSLCQLGRVVEAHQLLLQMELR-GCIPDVISYSTVI 295

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
                 G+    L L++ + ++G+  +   YN ++   C+ G++   E ++ +M    + 
Sbjct: 296 NGYCQVGELQRVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIA 355

Query: 647 PDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           PD      +  G+   G  +SA      +  R +  +  T
Sbjct: 356 PDGVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFIT 395



 Score = 45.8 bits (107), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 57/269 (21%), Positives = 111/269 (41%), Gaps = 12/269 (4%)

Query: 111 RMMEEKEI-GL--NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGA 167
           +++EE +I GL  N   Y  ++  LCK G + EA  ++  +    GI P   +Y + +  
Sbjct: 309 KLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISE-GIAPDGVIYTTLIDG 367

Query: 168 CAKLHSMVHANLCLDLMDSRMVGKNEVTYTELL-KLAVWQKNLSAVHEIWEDYIKHYSLS 226
             KL ++  A    D M  R +  + +TYT ++  L    + + A     E   K     
Sbjct: 368 FCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPD 427

Query: 227 IFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYI-NRTSEGRLRSSRLDIPIPLNA 285
             +    +  + +   +K A+     M+ + +   +      ++G  +   +D    L  
Sbjct: 428 EVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLH 487

Query: 286 LPVMKVLR---WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDR 342
               K L    ++++ +++   +  N   A +LM  M+  G  P + TY   + A    R
Sbjct: 488 EMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSR 547

Query: 343 GLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
            +    E+L+ M    L+P   T+ T +V
Sbjct: 548 EMVRAHELLRQMLDRELQP---TVVTFNV 573


>gi|299471526|emb|CBN80012.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 732

 Score = 91.7 bits (226), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 76/357 (21%), Positives = 154/357 (43%), Gaps = 36/357 (10%)

Query: 345 RNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLA-EALLDQISRCTNPK--PFSAF 401
           R  ++VL  MQ+  +KP     ++    C  A + + A E L    +R T P    +S+ 
Sbjct: 168 RKALDVLDRMQEQGVKPDSQNYSSAIAACGNARQWERAVELLASMAARGTPPDVLTYSSA 227

Query: 402 LAACDTMDKPERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKR 460
           +AAC  + + + A+ +   M+ Q ++P++  Y    S      A  + G   + VD  K 
Sbjct: 228 IAACAKVSRWKEAVGLLRSMKGQGVKPNVIVYSAAIS------ACRKGGQWETAVDLLKE 281

Query: 461 INAIEMDMARNNIQHSHI-----------SMKNLLKALGAEGMIRELIQYFCDSKTPLGT 509
           + A+   +A + I +S +               LL  +  +G++  +I            
Sbjct: 282 MPAV--GLAPDVITYSTVIDACAKRGQWEPAFRLLMEMPTKGVVANII------------ 327

Query: 510 PTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSM 569
            TY+ V+ +  +  +   A+ + ++M+  G+ P+  TY+  I  C+    ++ A  L+  
Sbjct: 328 -TYSIVIGACAKWGQWEEAVALLREMQENGVAPDVITYSSTISACAKKGQWEEAVGLLRE 386

Query: 570 MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
           M  +G  P  ++Y  +I      G + EA++LL  +   G+P DV+ Y+  +    +  R
Sbjct: 387 MPMEGVTPNAISYGIVISACAKRGRWREAIDLLQEMQAHGVPPDVINYSAAIDACAQASR 446

Query: 630 IDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
            +   +++ +M    + P+  + +         G    A+E L+ +    L  +V T
Sbjct: 447 WEQALWLLREMPATGLTPNVISYNSAIDACAKTGRSKIAVELLREMPAHGLAPDVIT 503



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 84/366 (22%), Positives = 156/366 (42%), Gaps = 25/366 (6%)

Query: 318 QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKAL 377
           +MQ  G++P S  Y   I A  + R     +E+L  M      P   T ++    C+K  
Sbjct: 176 RMQEQGVKPDSQNYSSAIAACGNARQWERAVELLASMAARGTPPDVLTYSSAIAACAKVS 235

Query: 378 ELDLAEALLDQISRCTNPKP----FSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTY 432
               A  LL  + +    KP    +SA ++AC    + E A+ +  +M    L PD+ TY
Sbjct: 236 RWKEAVGLLRSM-KGQGVKPNVIVYSAAISACRKGGQWETAVDLLKEMPAVGLAPDVITY 294

Query: 433 ELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGM 492
             +      ++A  + G    Q + A R   + M+M    +  + I+   ++ A    G 
Sbjct: 295 STV------IDACAKRG----QWEPAFR---LLMEMPTKGVVANIITYSIVIGACAKWGQ 341

Query: 493 IRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNI 549
             E +    + +     P   TY++ + +  +  +   A+ + ++M   G+ PNA +Y I
Sbjct: 342 WEEAVALLREMQENGVAPDVITYSSTISACAKKGQWEEAVGLLREMPMEGVTPNAISYGI 401

Query: 550 MIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEG 609
           +I  C+    ++ A  L+  M   G  P  + Y+A I        +++AL LL  +   G
Sbjct: 402 VISACAKRGRWREAIDLLQEMQAHGVPPDVINYSAAIDACAQASRWEQALWLLREMPATG 461

Query: 610 IPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAM 669
           +  +V+ YN+ +    + GR  +   ++ +M  + + PD  T   V +   +C       
Sbjct: 462 LTPNVISYNSAIDACAKTGRSKIAVELLREMPAHGLAPDVITYSAVIA---SCAMGRQWE 518

Query: 670 EALQVL 675
           EAL + 
Sbjct: 519 EALDLF 524



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 118/561 (21%), Positives = 227/561 (40%), Gaps = 63/561 (11%)

Query: 150 ERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELL----KLAVW 205
           +  G+ P    Y+S + AC        A   L  M +R    + +TY+  +    K++ W
Sbjct: 178 QEQGVKPDSQNYSSAIAACGNARQWERAVELLASMAARGTPPDVLTYSSAIAACAKVSRW 237

Query: 206 QKNLSAVHEIWEDYIKH----YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGK 261
           ++ +  +  +    +K     YS +I + RK           ++A + L+ M A+ +   
Sbjct: 238 KEAVGLLRSMKGQGVKPNVIVYSAAISACRKG-------GQWETAVDLLKEMPAVGLAPD 290

Query: 262 LYINRT------SEGRLRSS-RLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQ 314
           +    T        G+   + RL + +P   + V  ++  ++S VI AC +      A  
Sbjct: 291 VITYSTVIDACAKRGQWEPAFRLLMEMPTKGV-VANII--TYSIVIGACAKWGQWEEAVA 347

Query: 315 LMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECS 374
           L+ +MQ  G+ P   TY   I A          + +L+ M    + P   +   +   C+
Sbjct: 348 LLREMQENGVAPDVITYSSTISACAKKGQWEEAVGLLREMPMEGVTPNAISYGIVISACA 407

Query: 375 KALELDLAEALLDQISRCTNPKP---FSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIR 430
           K      A  LL ++     P     +SA + AC    + E+A+ +  +M    L P++ 
Sbjct: 408 KRGRWREAIDLLQEMQAHGVPPDVINYSAAIDACAQASRWEQALWLLREMPATGLTPNVI 467

Query: 431 TYELLFSLFGNVNAPYEEGNMFSQVDSAKRIN----AIEM--DMARNNIQHSHISMKNLL 484
           +Y                    S +D+  +      A+E+  +M  + +    I+   ++
Sbjct: 468 SYN-------------------SAIDACAKTGRSKIAVELLREMPAHGLAPDVITYSAVI 508

Query: 485 KALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIP 541
            +        E +  F + +    TP   + NT +++  +      A+++  +M T G+ 
Sbjct: 509 ASCAMGRQWEEALDLFREMQRQGITPDVVSCNTAINACAQGGWWEEALDVLGEMPTMGLV 568

Query: 542 PNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNL 601
           P+A +Y   ID C+    +K    L+  M   G  P  ++Y   +      G + EAL L
Sbjct: 569 PDAISYRTAIDACAKGDRWKEIIDLLREMSTVGLTPDAISYRFAMSACSVDGLWKEALVL 628

Query: 602 LDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVN 661
           L  +   G+  DV+ YN+ +    + GR      ++ QM    + PD ++    F+  ++
Sbjct: 629 LRDMLAVGLSPDVVTYNSAINACAKGGRWKEATVLLRQMPTFGLAPDVNS----FNAAID 684

Query: 662 -CGFHNSAMEALQVL-SMRML 680
            CG  +    A++VL  MR L
Sbjct: 685 ACGNGDQWGTAVEVLFEMRAL 705



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 101/502 (20%), Positives = 197/502 (39%), Gaps = 75/502 (14%)

Query: 111 RMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAK 170
           R M+ + +  N   Y   + A  KGG  E A +L+  +    G+ P +  Y++ + ACAK
Sbjct: 245 RSMKGQGVKPNVIVYSAAISACRKGGQWETAVDLLKEM-PAVGLAPDVITYSTVIDACAK 303

Query: 171 LHSMVHANLCLDLMDSRMVGKNEVTYTELL----KLAVWQKNLSAVHEIWE-----DYIK 221
                 A   L  M ++ V  N +TY+ ++    K   W++ ++ + E+ E     D I 
Sbjct: 304 RGQWEPAFRLLMEMPTKGVVANIITYSIVIGACAKWGQWEEAVALLREMQENGVAPDVIT 363

Query: 222 HYSLSIFSLRKFVW--SFTRLRDLKSAYETLQHMVALAMMGKLYINRTSE-GRLRSSRLD 278
           + S      +K  W  +   LR++      ++ +   A+   + I+  ++ GR R + +D
Sbjct: 364 YSSTISACAKKGQWEEAVGLLREMP-----MEGVTPNAISYGIVISACAKRGRWREA-ID 417

Query: 279 I-------PIPLNAL-------PVMKVLRW--------------------SFSDVIHACG 304
           +        +P + +          +  RW                    S++  I AC 
Sbjct: 418 LLQEMQAHGVPPDVINYSAAIDACAQASRWEQALWLLREMPATGLTPNVISYNSAIDACA 477

Query: 305 RTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDS 364
           +T  S +A +L+ +M + GL P   TY   I +    R     +++ + MQ+  + P   
Sbjct: 478 KTGRSKIAVELLREMPAHGLAPDVITYSAVIASCAMGRQWEEALDLFREMQRQGITPDVV 537

Query: 365 TIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ- 423
           +  T    C++    + A  +L ++          ++  A D   K +R  +I   +R+ 
Sbjct: 538 SCNTAINACAQGGWWEEALDVLGEMPTMGLVPDAISYRTAIDACAKGDRWKEIIDLLREM 597

Query: 424 ---KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISM 480
               L PD  +Y    S   +V+  ++E  +  +            DM    +    ++ 
Sbjct: 598 STVGLTPDAISYRFAMSAC-SVDGLWKEALVLLR------------DMLAVGLSPDVVTY 644

Query: 481 KNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKT 537
            + + A    G  +E         T    P   ++N  + +     +   A+E+  +M+ 
Sbjct: 645 NSAINACAKGGRWKEATVLLRQMPTFGLAPDVNSFNAAIDACGNGDQWGTAVEVLFEMRA 704

Query: 538 CGIPPNAATYNIMIDCCSIIRC 559
            G+ PN ATY   +  C   RC
Sbjct: 705 LGVSPNEATYLTAMYACK--RC 724


>gi|242058841|ref|XP_002458566.1| hypothetical protein SORBIDRAFT_03g035845 [Sorghum bicolor]
 gi|241930541|gb|EES03686.1| hypothetical protein SORBIDRAFT_03g035845 [Sorghum bicolor]
          Length = 796

 Score = 91.7 bits (226), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 117/524 (22%), Positives = 212/524 (40%), Gaps = 35/524 (6%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y ++M ALCK G +EEA  L   + E   + P +  +   +   A+          L  M
Sbjct: 249 YNVLMDALCKSGRVEEAFRLKGRMVEGR-VRPSIVTFGILISGLARGQQFGEVGAVLQEM 307

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYSLSIFSLRKFVWSFTRLRDL 243
               +  NEV Y E++     + + S   +++++ + K    ++ +      +  +  ++
Sbjct: 308 QGFGITPNEVIYNEMIGWHCRKGHCSEALKLFDEMVSKGIKQTVVTYNLIAKALCKEGEM 367

Query: 244 KSAYETLQHMVALAMMGKLYI-NRTSEGRLRSS-RLDIPIPLNALPVMKVLRWS---FSD 298
           + A + L  M+   MM    + N      LR + RLD+ + L    + + L+ +    + 
Sbjct: 368 EHAEKILDEMLLAGMMVHCSLFNSVVAWHLRGTGRLDLVLRLIREMLARFLKPNDALMTA 427

Query: 299 VIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNN 358
            I    ++     A ++  Q+   GL  +  T +  I  +     ++   +VLK M  + 
Sbjct: 428 CIQELCKSGKHEEAAEIWFQVLGKGLGVNVATSNALIHGLCQGNNMKEATKVLKAMVNSG 487

Query: 359 LKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPK--PFSAFLAACDTMDKPERAI 415
           ++    T   +   C KA ++D A  L D  I R   P    F+ FL     + K E  +
Sbjct: 488 VELDRITYNIMIQGCCKASKMDEAIQLRDDMIKRGFKPDLFTFNIFLHTYCNLGKVEEIL 547

Query: 416 KIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQ 474
            +  +M+ + L+PDI TY  +              + + +     + N    ++ +N ++
Sbjct: 548 HLLDQMKSEGLKPDIVTYGTII-------------DGYCKAKDMHKANEYLTELMKNGLR 594

Query: 475 HSHISMKNLLKALGAEGMIRELI------QYFCDSKTPLGTPTYNTVLHSLVEAQESHRA 528
            + +    L+   G  G I + I      +Y     TP+   TYN++++ +  A      
Sbjct: 595 PNAVIYNALIGGYGRNGNISDAIGILDTMKYNGIQPTPV---TYNSLMYWMCHAGLVEEV 651

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
             +F Q     I      Y I+I     I     A      M   G  P  MTYT L+  
Sbjct: 652 KAVFAQCIVKDIELGVIGYTIIIQGFCKIGKIDEAVMYFKEMHSRGIPPNKMTYTTLMFA 711

Query: 589 LLDYGDFDEALNLLD-LVSLEGIPHDVLLYNTILKKACEKGRID 631
               G+ +EA  L D +VSL GI  D + YNT++   CE   +D
Sbjct: 712 YSKSGNKEEASKLFDEMVSL-GIVPDSVSYNTLISGFCEVDSLD 754



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 96/465 (20%), Positives = 179/465 (38%), Gaps = 69/465 (14%)

Query: 255 ALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQ 314
           AL   G+L + R   G +R  +   P              +++ +I A  R      A  
Sbjct: 184 ALGCGGQLDVARKVFGEMRDGKTVAPDV-----------HTYTAMIKALCRAGEIDAAFA 232

Query: 315 LMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECS 374
           ++ +++  G+QP+  TY+  + A+     +     +   M +  ++P   T   L    +
Sbjct: 233 MLAELRRSGIQPTVVTYNVLMDALCKSGRVEEAFRLKGRMVEGRVRPSIVTFGILISGLA 292

Query: 375 KALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIR 430
           +  +     A+L ++       N   ++  +           A+K+F +M  K ++  + 
Sbjct: 293 RGQQFGEVGAVLQEMQGFGITPNEVIYNEMIGWHCRKGHCSEALKLFDEMVSKGIKQTVV 352

Query: 431 TYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAE 490
           TY L+        A  +EG M    + A++I   EM +A   +   H S+ N + A    
Sbjct: 353 TYNLI------AKALCKEGEM----EHAEKI-LDEMLLAGMMV---HCSLFNSVVAWHLR 398

Query: 491 G---------MIREL---------------IQYFCDSKT----------------PLGTP 510
           G         +IRE+               IQ  C S                   +   
Sbjct: 399 GTGRLDLVLRLIREMLARFLKPNDALMTACIQELCKSGKHEEAAEIWFQVLGKGLGVNVA 458

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           T N ++H L +      A ++ K M   G+  +  TYNIMI  C        A  L   M
Sbjct: 459 TSNALIHGLCQGNNMKEATKVLKAMVNSGVELDRITYNIMIQGCCKASKMDEAIQLRDDM 518

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           ++ GF P   T+   +    + G  +E L+LLD +  EG+  D++ Y TI+   C+   +
Sbjct: 519 IKRGFKPDLFTFNIFLHTYCNLGKVEEILHLLDQMKSEGLKPDIVTYGTIIDGYCKAKDM 578

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
                 + ++ +N ++P+    + +  GY   G  + A+  L  +
Sbjct: 579 HKANEYLTELMKNGLRPNAVIYNALIGGYGRNGNISDAIGILDTM 623



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 79/407 (19%), Positives = 154/407 (37%), Gaps = 51/407 (12%)

Query: 265 NRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGL 324
            R  EGR+R S +                 +F  +I    R Q  G    ++ +MQ  G+
Sbjct: 270 GRMVEGRVRPSIV-----------------TFGILISGLARGQQFGEVGAVLQEMQGFGI 312

Query: 325 QPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEA 384
            P+   Y+  I            +++   M    +K    T   ++    K  E++ AE 
Sbjct: 313 TPNEVIYNEMIGWHCRKGHCSEALKLFDEMVSKGIKQTVVTYNLIAKALCKEGEMEHAEK 372

Query: 385 LLDQI------SRCTNPKPFSAF-LAACDTMDKPERAIKIFAKMRQKLRPDI-------- 429
           +LD++        C+      A+ L     +D   R I+    + + L+P+         
Sbjct: 373 ILDEMLLAGMMVHCSLFNSVVAWHLRGTGRLDLVLRLIR--EMLARFLKPNDALMTACIQ 430

Query: 430 ---------RTYELLFSLFG-----NVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQH 475
                       E+ F + G     NV       +   Q ++ K    +   M  + ++ 
Sbjct: 431 ELCKSGKHEEAAEIWFQVLGKGLGVNVATSNALIHGLCQGNNMKEATKVLKAMVNSGVEL 490

Query: 476 SHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIF 532
             I+   +++       + E IQ   D       P   T+N  LH+     +    + + 
Sbjct: 491 DRITYNIMIQGCCKASKMDEAIQLRDDMIKRGFKPDLFTFNIFLHTYCNLGKVEEILHLL 550

Query: 533 KQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDY 592
            QMK+ G+ P+  TY  +ID     +    A+  ++ ++++G  P  + Y ALI      
Sbjct: 551 DQMKSEGLKPDIVTYGTIIDGYCKAKDMHKANEYLTELMKNGLRPNAVIYNALIGGYGRN 610

Query: 593 GDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQ 639
           G+  +A+ +LD +   GI    + YN+++   C  G ++ ++ +  Q
Sbjct: 611 GNISDAIGILDTMKYNGIQPTPVTYNSLMYWMCHAGLVEEVKAVFAQ 657



 Score = 58.9 bits (141), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 58/266 (21%), Positives = 107/266 (40%), Gaps = 55/266 (20%)

Query: 382 AEALLDQISRCTNP--KPFSAFLAACDTMDKPERAIKIFAKMR--QKLRPDIRTYELLFS 437
           A+A L+  +R  +P  K  S  + A     + + A K+F +MR  + + PD+ TY  +  
Sbjct: 160 ADAFLELSARGASPSIKTCSILVEALGCGGQLDVARKVFGEMRDGKTVAPDVHTYTAMIK 219

Query: 438 LF---GNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIR 494
                G ++A +                A+  ++ R+ IQ + +                
Sbjct: 220 ALCRAGEIDAAF----------------AMLAELRRSGIQPTVV---------------- 247

Query: 495 ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCC 554
                           TYN ++ +L ++     A  +  +M    + P+  T+ I+I   
Sbjct: 248 ----------------TYNVLMDALCKSGRVEEAFRLKGRMVEGRVRPSIVTFGILISGL 291

Query: 555 SIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDV 614
           +  + F    A++  M   G  P  + Y  +I      G   EAL L D +  +GI   V
Sbjct: 292 ARGQQFGEVGAVLQEMQGFGITPNEVIYNEMIGWHCRKGHCSEALKLFDEMVSKGIKQTV 351

Query: 615 LLYNTILKKACEKGRIDVIEFIIEQM 640
           + YN I K  C++G ++  E I+++M
Sbjct: 352 VTYNLIAKALCKEGEMEHAEKILDEM 377



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 3/134 (2%)

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDG--FYPQTMTYTA 584
           RA + F ++   G  P+  T +I+++          A  +   M RDG    P   TYTA
Sbjct: 158 RAADAFLELSARGASPSIKTCSILVEALGCGGQLDVARKVFGEM-RDGKTVAPDVHTYTA 216

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
           +IK L   G+ D A  +L  +   GI   V+ YN ++   C+ GR++    +  +M + +
Sbjct: 217 MIKALCRAGEIDAAFAMLAELRRSGIQPTVVTYNVLMDALCKSGRVEEAFRLKGRMVEGR 276

Query: 645 VQPDPSTCHFVFSG 658
           V+P   T   + SG
Sbjct: 277 VRPSIVTFGILISG 290



 Score = 47.4 bits (111), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 79/385 (20%), Positives = 153/385 (39%), Gaps = 35/385 (9%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQN-NLKPQDSTIATLS 370
           A    L++ + G  PS  T    + A+     L    +V   M+    + P   T   + 
Sbjct: 159 AADAFLELSARGASPSIKTCSILVEALGCGGQLDVARKVFGEMRDGKTVAPDVHTYTAMI 218

Query: 371 VECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDKPERAIKIFAKMRQ-KL 425
               +A E+D A A+L ++ R +  +P    ++  + A     + E A ++  +M + ++
Sbjct: 219 KALCRAGEIDAAFAMLAELRR-SGIQPTVVTYNVLMDALCKSGRVEEAFRLKGRMVEGRV 277

Query: 426 RPDIRTYELLFS------LFGNVNAPYEEGNMFSQVDSAKRIN--------------AIE 465
           RP I T+ +L S       FG V A  +E   F    +    N              A++
Sbjct: 278 RPSIVTFGILISGLARGQQFGEVGAVLQEMQGFGITPNEVIYNEMIGWHCRKGHCSEALK 337

Query: 466 M--DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLV--E 521
           +  +M    I+ + ++   + KAL  EG + E  +   D     G   + ++ +S+V   
Sbjct: 338 LFDEMVSKGIKQTVVTYNLIAKALCKEGEM-EHAEKILDEMLLAGMMVHCSLFNSVVAWH 396

Query: 522 AQESHR---AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQ 578
            + + R    + + ++M    + PN A     I         + A+ +   ++  G    
Sbjct: 397 LRGTGRLDLVLRLIREMLARFLKPNDALMTACIQELCKSGKHEEAAEIWFQVLGKGLGVN 456

Query: 579 TMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIE 638
             T  ALI  L    +  EA  +L  +   G+  D + YN +++  C+  ++D    + +
Sbjct: 457 VATSNALIHGLCQGNNMKEATKVLKAMVNSGVELDRITYNIMIQGCCKASKMDEAIQLRD 516

Query: 639 QMHQNKVQPDPSTCHFVFSGYVNCG 663
            M +   +PD  T +     Y N G
Sbjct: 517 DMIKRGFKPDLFTFNIFLHTYCNLG 541



 Score = 45.1 bits (105), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 81/431 (18%), Positives = 168/431 (38%), Gaps = 57/431 (13%)

Query: 46  LNEESISKATQMQIV------DALCR-GERSRASHLLLNLGHAHHSLGADDFFHILNYCA 98
           L +E +SK  +  +V       ALC+ GE   A  +L  +  A   +    F  ++ +  
Sbjct: 338 LFDEMVSKGIKQTVVTYNLIAKALCKEGEMEHAEKILDEMLLAGMMVHCSLFNSVVAWHL 397

Query: 99  RSPDPL-FVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIY-FLGERYGIYP 156
           R    L  V+   R M  + +  N+      +Q LCK G  EEA+ + +  LG+  G+  
Sbjct: 398 RGTGRLDLVLRLIREMLARFLKPNDALMTACIQELCKSGKHEEAAEIWFQVLGKGLGVN- 456

Query: 157 ILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIW 216
            +   N+ +    + ++M  A   L  M +  V  + +TY  +++       +    ++ 
Sbjct: 457 -VATSNALIHGLCQGNNMKEATKVLKAMVNSGVELDRITYNIMIQGCCKASKMDEAIQLR 515

Query: 217 EDYIKH-YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSS 275
           +D IK  +   +F+   F+ ++  L  ++     L  M              SEG     
Sbjct: 516 DDMIKRGFKPDLFTFNIFLHTYCNLGKVEEILHLLDQM-------------KSEG----- 557

Query: 276 RLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFI 335
                        +K    ++  +I    + ++   A + + ++   GL+P++  Y+  I
Sbjct: 558 -------------LKPDIVTYGTIIDGYCKAKDMHKANEYLTELMKNGLRPNAVIYNALI 604

Query: 336 RAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLS--------VECSKALELDLAEALLD 387
                +  + + + +L  M+ N ++P   T  +L         VE  KA+    A+ ++ 
Sbjct: 605 GGYGRNGNISDAIGILDTMKYNGIQPTPVTYNSLMYWMCHAGLVEEVKAV---FAQCIVK 661

Query: 388 QISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPY 446
            I        ++  +     + K + A+  F +M  + + P+  TY  L   +       
Sbjct: 662 DIE--LGVIGYTIIIQGFCKIGKIDEAVMYFKEMHSRGIPPNKMTYTTLMFAYSKSGNKE 719

Query: 447 EEGNMFSQVDS 457
           E   +F ++ S
Sbjct: 720 EASKLFDEMVS 730


>gi|18407744|ref|NP_564809.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169913|sp|Q9CAM8.1|PP100_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63150
 gi|12323259|gb|AAG51611.1|AC010795_15 unknown protein; 70626-72515 [Arabidopsis thaliana]
 gi|15810427|gb|AAL07101.1| unknown protein [Arabidopsis thaliana]
 gi|24030501|gb|AAN41397.1| unknown protein [Arabidopsis thaliana]
 gi|332195941|gb|AEE34062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 629

 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 95/397 (23%), Positives = 164/397 (41%), Gaps = 53/397 (13%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           F+ ++ A  +     L   L  QMQ+LG+    +TY  FI        L   + VL  M 
Sbjct: 86  FNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMM 145

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDKP 411
           +   +P   T+++L      +  +  A AL+DQ+      KP    F+  +      +K 
Sbjct: 146 KLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVE-MGYKPDTFTFTTLIHGLFLHNKA 204

Query: 412 ERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
             A+ +  +M Q+  +PD+ TY  +      VN   + G               ++D+A 
Sbjct: 205 SEAVALVDQMVQRGCQPDLVTYGTV------VNGLCKRG---------------DIDLAL 243

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAME 530
           N           LL  + A             ++       +NT++ SL + +    A++
Sbjct: 244 N-----------LLNKMEA-------------ARIKANVVIFNTIIDSLCKYRHVEVAVD 279

Query: 531 IFKQMKTCGIPPNAATYNIMIDC-CSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
           +F +M+T GI PN  TYN +I+C C+  R +  AS L+S M+     P  +T+ ALI   
Sbjct: 280 LFTEMETKGIRPNVVTYNSLINCLCNYGR-WSDASRLLSNMLEKKINPNVVTFNALIDAF 338

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649
              G   EA  L + +    I  D + YN ++   C   R+D  + + + M      P+ 
Sbjct: 339 FKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNI 398

Query: 650 STCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
            T + + +G+  C      +E  + +S R L     T
Sbjct: 399 QTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVT 435



 Score = 86.3 bits (212), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 84/378 (22%), Positives = 156/378 (41%), Gaps = 28/378 (7%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A  L+ QM  +G +P + T+   I  +         + ++  M Q   +P   T  T+  
Sbjct: 172 AVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVN 231

Query: 372 ECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDK---PERAIKIFAKMRQK-LRP 427
              K  ++DLA  LL+++           F    D++ K    E A+ +F +M  K +RP
Sbjct: 232 GLCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRP 291

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL 487
           ++ TY  L +   N          + +   A R+ +   +M    I  + ++   L+ A 
Sbjct: 292 NVVTYNSLINCLCN----------YGRWSDASRLLS---NMLEKKINPNVVTFNALIDAF 338

Query: 488 GAEGMI-------RELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGI 540
             EG +        E+IQ   D  T     TYN +++          A ++FK M +   
Sbjct: 339 FKEGKLVEAEKLHEEMIQRSIDPDTI----TYNLLINGFCMHNRLDEAKQMFKFMVSKDC 394

Query: 541 PPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALN 600
            PN  TYN +I+     +  +    L   M + G    T+TYT +I+     GD D A  
Sbjct: 395 LPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQM 454

Query: 601 LLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYV 660
           +   +    +P D++ Y+ +L   C  G++D    I + + +++++ +    + +  G  
Sbjct: 455 VFKQMVSNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTMIEGMC 514

Query: 661 NCGFHNSAMEALQVLSMR 678
             G    A +    LS++
Sbjct: 515 KAGKVGEAWDLFCSLSIK 532



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/216 (23%), Positives = 95/216 (43%), Gaps = 7/216 (3%)

Query: 439 FGNVNAPYEEGNMFSQVDSAKRINAIEM--DMARNNIQHSHISMKNLLKALGAEGMIREL 496
           F + +  Y E       D  K  +A+++  DM ++    S +    LL A+       EL
Sbjct: 43  FASASGDYREILRNRLSDIIKVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKF-EL 101

Query: 497 IQYFCDSKTPLGTP----TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID 552
           +    +    LG      TY+  ++      +   A+ +  +M   G  P+  T + +++
Sbjct: 102 VISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLN 161

Query: 553 CCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPH 612
                +    A ALV  MV  G+ P T T+T LI  L  +    EA+ L+D +   G   
Sbjct: 162 GYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQP 221

Query: 613 DVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
           D++ Y T++   C++G ID+   ++ +M   +++ +
Sbjct: 222 DLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIKAN 257



 Score = 59.7 bits (143), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 82/393 (20%), Positives = 166/393 (42%), Gaps = 30/393 (7%)

Query: 276 RLDIPIPLNALPVMKVLRWS-----FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHT 330
           R DI + LN L  M+  R       F+ +I +  + ++  +A  L  +M++ G++P+  T
Sbjct: 236 RGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVT 295

Query: 331 YDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-I 389
           Y+  I  + +     +   +L  M +  + P   T   L     K  +L  AE L ++ I
Sbjct: 296 YNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMI 355

Query: 390 SRCTNPKP--FSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPY 446
            R  +P    ++  +      ++ + A ++F  M  K   P+I+TY  L + F       
Sbjct: 356 QRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVE 415

Query: 447 EEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTP 506
           +   +F ++         +  +  N + ++ I ++   +A G     + + +    ++ P
Sbjct: 416 DGVELFREMS--------QRGLVGNTVTYTTI-IQGFFQA-GDCDSAQMVFKQMVSNRVP 465

Query: 507 LGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID-CCSIIRCFKSASA 565
               TY+ +LH L    +   A+ IFK ++   +  N   YN MI+  C   +  ++   
Sbjct: 466 TDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTMIEGMCKAGKVGEAWDL 525

Query: 566 LVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILK--- 622
             S+ ++    P  +TY  +I  L       EA +L   +  +G   +   YNT+++   
Sbjct: 526 FCSLSIK----PDVVTYNTMISGLCSKRLLQEADDLFRKMKEDGTLPNSGTYNTLIRANL 581

Query: 623 KACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFV 655
           + C++        +I++M  +    D ST   V
Sbjct: 582 RDCDRA---ASAELIKEMRSSGFVGDASTISLV 611



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 125/297 (42%), Gaps = 21/297 (7%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           AE+L  +M    + P + TY+  I        L    ++ K M   +  P   T  TL  
Sbjct: 347 AEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLIN 406

Query: 372 ECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRP- 427
              K   ++    L  ++S+     N   ++  +         + A  +F +M     P 
Sbjct: 407 GFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPT 466

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL 487
           DI TY +L      ++     G + + +   K +   EM++   NI   +  ++ + KA 
Sbjct: 467 DIMTYSIL------LHGLCSYGKLDTALVIFKYLQKSEMEL---NIFIYNTMIEGMCKA- 516

Query: 488 GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATY 547
              G + E    FC         TYNT++  L   +    A ++F++MK  G  PN+ TY
Sbjct: 517 ---GKVGEAWDLFCSLSIKPDVVTYNTMISGLCSKRLLQEADDLFRKMKEDGTLPNSGTY 573

Query: 548 NIMIDCCSIIRCFKSASA-LVSMMVRDGFYPQTMTYTALIKILLDYGDFDEA-LNLL 602
           N +I   ++  C ++ASA L+  M   GF     T + +  +L D G  D++ LN+L
Sbjct: 574 NTLIR-ANLRDCDRAASAELIKEMRSSGFVGDASTISLVTNMLHD-GRLDKSFLNML 628


>gi|225429339|ref|XP_002269471.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02860
           [Vitis vinifera]
          Length = 811

 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 130/634 (20%), Positives = 239/634 (37%), Gaps = 100/634 (15%)

Query: 94  LNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYG 153
           L +  +    L V E  R  +E E+ LN     +++  L KGG +  A++L++ L +  G
Sbjct: 137 LGFYKKCDTALRVFEWVRNRKESELLLNGSIIAVIISILGKGGRVSAAASLLHNLCKD-G 195

Query: 154 IYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVH 213
               +  Y S + A         A +    M+        +TY  +L +           
Sbjct: 196 FDVDVYAYTSMITAFTSNGRYREAVMVFKKMEEVGCKPTLITYNVILNV----------- 244

Query: 214 EIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYE--TLQHMVALAMMGKLYINRTSEGR 271
                    Y        K V    R++    A +  T   +++    G LY    + G 
Sbjct: 245 ---------YGKMGMPWNKMVGLVDRMKSAGIAPDSYTYNTLISCCRRGNLY--EEAAGV 293

Query: 272 LRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTY 331
           L+  +L    P          + +++ ++   G+++ S  A +++ +M+  G  PS  TY
Sbjct: 294 LKEMKLAGFSPD---------KVTYNALLDVYGKSRRSKEAMEVLQEMEGNGCPPSIVTY 344

Query: 332 DGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR 391
           +  I A   D  L + +E+   M +  +KP   T  TL     KA +   A  + +++ R
Sbjct: 345 NSLISAYARDGLLEDALELKNQMVEKGIKPDVFTYTTLLSGFEKAGKDKAAVQIFEEM-R 403

Query: 392 CTNPKP----FSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPY 446
               KP    F+A +       K    +K+F  ++  +  PDI T+  L S+FG      
Sbjct: 404 NEGCKPNICTFNALIKMHGNRGKFTEMMKVFEDIKTFQCSPDIVTWNTLLSVFGQNGMDS 463

Query: 447 EEGNMFSQ----------------VDSAKRINAIEMDMA------RNNIQHSHISMKNLL 484
           E   +F +                + S  R  + +  MA         +     S   +L
Sbjct: 464 EVSGVFKEMKRAGFVPERDTFNTLISSYSRCGSFDQAMAVYKRMLEAGVNPDLSSYNAVL 523

Query: 485 KALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHR----AMEI------ 531
            AL   G+ ++  +   + K     P   TY ++LH+    +E  R    A EI      
Sbjct: 524 AALARGGLWKQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEIERMCALAEEIYSGIIE 583

Query: 532 -------------------------FKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASAL 566
                                    F +++  G  P+  T N M+      +    A+ +
Sbjct: 584 PRAVLLKTLVLVNSKCDLLMETERAFLELRQRGFSPDITTLNAMVSIYGRRQMVAKANEI 643

Query: 567 VSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE 626
           +  M R GF P   TY +L+ +     +F+ +  +L  +  +GI  D++ YNT++   C 
Sbjct: 644 LDCMKRGGFTPSLTTYNSLMYMYSRSANFERSEEILREILAKGIRPDIISYNTVIYAYCR 703

Query: 627 KGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYV 660
            GR+     ++ +M ++   PD  T +   + Y 
Sbjct: 704 NGRMRDASRVLSEMRESGPAPDIITYNTFIASYA 737



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/268 (23%), Positives = 121/268 (45%), Gaps = 12/268 (4%)

Query: 398 FSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVD 456
           +++ + A  +  +   A+ +F KM +   +P + TY ++ +++G +  P+ +  M   VD
Sbjct: 203 YTSMITAFTSNGRYREAVMVFKKMEEVGCKPTLITYNVILNVYGKMGMPWNK--MVGLVD 260

Query: 457 SAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIREL-IQYFCDSKTPLGTPTYNTV 515
             K    I  D    N   S     NL +   A G+++E+ +  F   K      TYN +
Sbjct: 261 RMKSA-GIAPDSYTYNTLISCCRRGNLYEE--AAGVLKEMKLAGFSPDKV-----TYNAL 312

Query: 516 LHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGF 575
           L    +++ S  AME+ ++M+  G PP+  TYN +I   +     + A  L + MV  G 
Sbjct: 313 LDVYGKSRRSKEAMEVLQEMEGNGCPPSIVTYNSLISAYARDGLLEDALELKNQMVEKGI 372

Query: 576 YPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEF 635
            P   TYT L+      G    A+ + + +  EG   ++  +N ++K    +G+   +  
Sbjct: 373 KPDVFTYTTLLSGFEKAGKDKAAVQIFEEMRNEGCKPNICTFNALIKMHGNRGKFTEMMK 432

Query: 636 IIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
           + E +   +  PD  T + + S +   G
Sbjct: 433 VFEDIKTFQCSPDIVTWNTLLSVFGQNG 460



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 63/281 (22%), Positives = 126/281 (44%), Gaps = 25/281 (8%)

Query: 400 AFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAK 459
            F   CDT      A+++F  +R +     +  ELL  L G++ A      + S +    
Sbjct: 138 GFYKKCDT------ALRVFEWVRNR-----KESELL--LNGSIIAV-----IISILGKGG 179

Query: 460 RINAIEM---DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPT---YN 513
           R++A      ++ ++       +  +++ A  + G  RE +  F   +     PT   YN
Sbjct: 180 RVSAAASLLHNLCKDGFDVDVYAYTSMITAFTSNGRYREAVMVFKKMEEVGCKPTLITYN 239

Query: 514 TVLHSLVE-AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVR 572
            +L+   +     ++ + +  +MK+ GI P++ TYN +I CC     ++ A+ ++  M  
Sbjct: 240 VILNVYGKMGMPWNKMVGLVDRMKSAGIAPDSYTYNTLISCCRRGNLYEEAAGVLKEMKL 299

Query: 573 DGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDV 632
            GF P  +TY AL+ +        EA+ +L  +   G P  ++ YN+++      G ++ 
Sbjct: 300 AGFSPDKVTYNALLDVYGKSRRSKEAMEVLQEMEGNGCPPSIVTYNSLISAYARDGLLED 359

Query: 633 IEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
              +  QM +  ++PD  T   + SG+   G   +A++  +
Sbjct: 360 ALELKNQMVEKGIKPDVFTYTTLLSGFEKAGKDKAAVQIFE 400



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 81/406 (19%), Positives = 148/406 (36%), Gaps = 56/406 (13%)

Query: 299 VIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNN 358
           +I   G+      A  L+  +   G     + Y   I A  S+   R  + V K M++  
Sbjct: 171 IISILGKGGRVSAAASLLHNLCKDGFDVDVYAYTSMITAFTSNGRYREAVMVFKKMEEVG 230

Query: 359 LKPQDSTI-ATLSVECSKALELDLAEALLDQISRC---TNPKPFSAFLAACDTMDKPERA 414
            KP   T    L+V     +  +    L+D++       +   ++  ++ C   +  E A
Sbjct: 231 CKPTLITYNVILNVYGKMGMPWNKMVGLVDRMKSAGIAPDSYTYNTLISCCRRGNLYEEA 290

Query: 415 IKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNI 473
             +  +M+     PD  TY  L  ++G             +   +K    +  +M  N  
Sbjct: 291 AGVLKEMKLAGFSPDKVTYNALLDVYG-------------KSRRSKEAMEVLQEMEGNGC 337

Query: 474 QHSHISMKNLLKALGAEGMIR---ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAME 530
             S ++  +L+ A   +G++    EL     +        TY T+L    +A +   A++
Sbjct: 338 PPSIVTYNSLISAYARDGLLEDALELKNQMVEKGIKPDVFTYTTLLSGFEKAGKDKAAVQ 397

Query: 531 IFKQMKTCGIPPNAATYNIMI----------------------DCCSIIRCFKS------ 562
           IF++M+  G  PN  T+N +I                       C   I  + +      
Sbjct: 398 IFEEMRNEGCKPNICTFNALIKMHGNRGKFTEMMKVFEDIKTFQCSPDIVTWNTLLSVFG 457

Query: 563 -------ASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVL 615
                   S +   M R GF P+  T+  LI      G FD+A+ +   +   G+  D+ 
Sbjct: 458 QNGMDSEVSGVFKEMKRAGFVPERDTFNTLISSYSRCGSFDQAMAVYKRMLEAGVNPDLS 517

Query: 616 LYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVN 661
            YN +L      G     E ++ +M   + +P+  T   +   Y N
Sbjct: 518 SYNAVLAALARGGLWKQSEKVLAEMKDGRCKPNELTYCSLLHAYAN 563



 Score = 65.1 bits (157), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 99/506 (19%), Positives = 194/506 (38%), Gaps = 63/506 (12%)

Query: 106 VMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFL 165
            ME  + ME      +   Y  ++ A  + G LE+A  L   + E+ GI P +  Y + L
Sbjct: 325 AMEVLQEMEGNGCPPSIVTYNSLISAYARDGLLEDALELKNQMVEK-GIKPDVFTYTTLL 383

Query: 166 GACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSL 225
               K      A    + M +     N  T+  L+K+   +   + + +++ED       
Sbjct: 384 SGFEKAGKDKAAVQIFEEMRNEGCKPNICTFNALIKMHGNRGKFTEMMKVFED------- 436

Query: 226 SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNA 285
                         ++  + + + +     L++ G+  ++    G  +  +    +P   
Sbjct: 437 --------------IKTFQCSPDIVTWNTLLSVFGQNGMDSEVSGVFKEMKRAGFVPE-- 480

Query: 286 LPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLR 345
                  R +F+ +I +  R  +   A  +  +M   G+ P   +Y+  + A+      +
Sbjct: 481 -------RDTFNTLISSYSRCGSFDQAMAVYKRMLEAGVNPDLSSYNAVLAALARGGLWK 533

Query: 346 NGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI------SRCTNPKPFS 399
              +VL  M+    KP + T  +L    +   E++   AL ++I       R    K   
Sbjct: 534 QSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEIERMCALAEEIYSGIIEPRAVLLKTLV 593

Query: 400 AFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSA 458
              + CD + + ERA   F ++RQ+   PDI T   + S++G      +   +   +D  
Sbjct: 594 LVNSKCDLLMETERA---FLELRQRGFSPDITTLNAMVSIYGRRQMVAKANEI---LDCM 647

Query: 459 KRINAIEMDMARNNIQHSHISMKN------LLKALGAEGMIRELIQYFCDSKTPLGTPTY 512
           KR          N++ + +    N      +L+ + A+G+  ++I             +Y
Sbjct: 648 KRGGFTPSLTTYNSLMYMYSRSANFERSEEILREILAKGIRPDII-------------SY 694

Query: 513 NTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVR 572
           NTV+++         A  +  +M+  G  P+  TYN  I   +    F  A  +V  M++
Sbjct: 695 NTVIYAYCRNGRMRDASRVLSEMRESGPAPDIITYNTFIASYAADSMFVEAIDVVCYMIK 754

Query: 573 DGFYPQTMTYTALIKILLDYGDFDEA 598
            G  P   TY +++         DEA
Sbjct: 755 HGCKPNQSTYNSIVDWYCKLNRRDEA 780



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 48/217 (22%), Positives = 86/217 (39%), Gaps = 4/217 (1%)

Query: 483 LLKALGAEGMIR---ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCG 539
           ++  LG  G +     L+   C     +    Y +++ +         A+ +FK+M+  G
Sbjct: 171 IISILGKGGRVSAAASLLHNLCKDGFDVDVYAYTSMITAFTSNGRYREAVMVFKKMEEVG 230

Query: 540 IPPNAATYNIMIDCCSIIRC-FKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEA 598
             P   TYN++++    +   +     LV  M   G  P + TY  LI        ++EA
Sbjct: 231 CKPTLITYNVILNVYGKMGMPWNKMVGLVDRMKSAGIAPDSYTYNTLISCCRRGNLYEEA 290

Query: 599 LNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
             +L  + L G   D + YN +L    +  R      ++++M  N   P   T + + S 
Sbjct: 291 AGVLKEMKLAGFSPDKVTYNALLDVYGKSRRSKEAMEVLQEMEGNGCPPSIVTYNSLISA 350

Query: 659 YVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDFE 695
           Y   G    A+E    +  + +  +V T     S FE
Sbjct: 351 YARDGLLEDALELKNQMVEKGIKPDVFTYTTLLSGFE 387


>gi|302826107|ref|XP_002994593.1| hypothetical protein SELMODRAFT_138846 [Selaginella moellendorffii]
 gi|300137364|gb|EFJ04344.1| hypothetical protein SELMODRAFT_138846 [Selaginella moellendorffii]
          Length = 521

 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 84/378 (22%), Positives = 155/378 (41%), Gaps = 23/378 (6%)

Query: 319 MQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALE 378
           +Q    +P    Y+  I A      + +  +    MQ+    P + T   L      A  
Sbjct: 95  LQGTTFRPDLGCYNLLIDAYGKSLNIEDAEKTFNRMQEALCVPNEETFGVLINGYRLAGS 154

Query: 379 LDLAEALLDQI-SRCTNPKPFS--AFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYEL 434
            + AE L  Q+  R  +P P +   FL   +   +  RA  +F  + + +  P+I TY  
Sbjct: 155 FEKAEELFVQMQKRGYSPGPLACNTFLHVLEDAKEYRRAEALFRDLEKYECEPNIDTYNR 214

Query: 435 LFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIR 494
           +  ++G    P +   ++  +  A         M   NI     +   L+ A   +G+ R
Sbjct: 215 MIVIYGKAGEPSKAEMLYRSMRRA---------MCPPNI----CTFTALMNAFARQGLYR 261

Query: 495 ELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI 551
           E  +YF   +     P    YN ++ +  +      A+EIF+ M+  G  P+  ++NI+I
Sbjct: 262 EAERYFDKLQEFDYKPDHYAYNALMEAYSQGGSPAGALEIFQTMQRNGCFPDTVSHNILI 321

Query: 552 DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIP 611
           +       ++ A  +   M   GF P   +   L+      G  +EA  L+  +  +G  
Sbjct: 322 NAYGRAGLYEDAEKIFKSMQSAGFSPNLKSNMLLLSAYARAGRVEEAEELVSAMERDGTK 381

Query: 612 HDVLLYNTILKKACEKGRIDVIEFIIEQMHQN---KVQPDPSTCHFVFSGYVNCGFHNSA 668
            D L+YN+++      GR + +E ++ +M ++   + +PD  T + +   Y   GF   A
Sbjct: 382 PDTLIYNSLINAYGVSGRHEDMEALLAKMVKSSSKQTKPDIGTYNTLIQVYAQAGFIPRA 441

Query: 669 MEALQVLSMRMLCEEVST 686
            E  Q L+   L  + +T
Sbjct: 442 EELFQGLARLKLVPDATT 459



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 79/356 (22%), Positives = 133/356 (37%), Gaps = 52/356 (14%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           AE+L +QMQ  G  P     + F+  +   +  R    + + +++   +P   T   + V
Sbjct: 158 AEELFVQMQKRGYSPGPLACNTFLHVLEDAKEYRRAEALFRDLEKYECEPNIDTYNRMIV 217

Query: 372 ECSKALELDLAEALLDQISRCTNPK---PFSAFLAACDTMDKPERAIKIFAKMRQ-KLRP 427
              KA E   AE L   + R   P     F+A + A         A + F K+++   +P
Sbjct: 218 IYGKAGEPSKAEMLYRSMRRAMCPPNICTFTALMNAFARQGLYREAERYFDKLQEFDYKP 277

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL 487
           D   Y  L   +    +P     +F               M RN      +S   L+ A 
Sbjct: 278 DHYAYNALMEAYSQGGSPAGALEIFQT-------------MQRNGCFPDTVSHNILINAY 324

Query: 488 GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATY 547
           G  G+  +                                A +IFK M++ G  PN  + 
Sbjct: 325 GRAGLYED--------------------------------AEKIFKSMQSAGFSPNLKSN 352

Query: 548 NIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYG---DFDEALNLLDL 604
            +++   +     + A  LVS M RDG  P T+ Y +LI      G   D +  L  +  
Sbjct: 353 MLLLSAYARAGRVEEAEELVSAMERDGTKPDTLIYNSLINAYGVSGRHEDMEALLAKMVK 412

Query: 605 VSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYV 660
            S +    D+  YNT+++   + G I   E + + + + K+ PD +T   +  GY 
Sbjct: 413 SSSKQTKPDIGTYNTLIQVYAQAGFIPRAEELFQGLARLKLVPDATTWTALMGGYA 468


>gi|356548144|ref|XP_003542463.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Glycine max]
          Length = 756

 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 123/606 (20%), Positives = 236/606 (38%), Gaps = 97/606 (16%)

Query: 58  QIVDALCRGERSRASHLLLNLGHAHHSLGADD--FFHILNYCARSPDPLFVMETWRMMEE 115
           Q++D L R   S ++  L     A  +  A    F  +L   AR+     ++   R M  
Sbjct: 61  QLLDLLRRQPDSSSALSLFQWASAQPNYSAHPSVFHELLRQLARAGSFDSMLTLLRQMHS 120

Query: 116 KEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGER-YGIYPILPVYNSFLGACAKLHSM 174
            +I ++   +L+ ++      +L    N ++ L ER + + P    YN  L    K + +
Sbjct: 121 SKIPVDESTFLIFLETYATSHHLHAEINPLFLLMERDFAVKPDTRFYNVALSLLVKANKL 180

Query: 175 VHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFV 234
                 ++ + S+MV   +    ++    +  + L   H++    +    +  + LR   
Sbjct: 181 K----LVETLHSKMVA--DAVPPDVSTFNILIRALCKAHQLRPAILMLEDMPNYGLRPDE 234

Query: 235 WSFTRL-------RDLKSAYETLQHMVALAM-MGKLYINRTSEGRLRSSRLDIPIPLNAL 286
            +FT L        D++ A    + MV     +  + +N    G  +  R++        
Sbjct: 235 KTFTTLMQGFIEEADVEGALRIKELMVESGCELTSVSVNVLVNGLCKEGRIE-------- 286

Query: 287 PVMKVLRW------------SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGF 334
              + LR+            +F+ +++   RT +     ++M  M   G +   +TY+  
Sbjct: 287 ---EALRFIYEEEGFCPDQVTFNALVNGLCRTGHIKQGLEMMDFMLEKGFELDVYTYNSL 343

Query: 335 IRAIVSDRGLRNGMEVLKIMQQNNLKPQDST----IATLSVECSKALELDLAEALLDQ-- 388
           I  +     +   +E+L  M   + +P   T    I TL  E       +LA  L  +  
Sbjct: 344 ISGLCKLGEIDEAVEILHHMVSRDCEPNTVTYNTLIGTLCKENHVEAATELARVLTSKGV 403

Query: 389 -ISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPY 446
               CT    F++ +         E A+++F +M++K   PD  TY +L           
Sbjct: 404 LPDVCT----FNSLIQGLCLTSNREIAMELFEEMKEKGCDPDEFTYSILIE--------- 450

Query: 447 EEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTP 506
                   + S +R+    M                LLK +   G  R ++         
Sbjct: 451 -------SLCSERRLKEALM----------------LLKEMELSGCARNVV--------- 478

Query: 507 LGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASAL 566
                YNT++  L +      A +IF QM+  G+  ++ TYN +I+     +  + A+ L
Sbjct: 479 ----VYNTLIDGLCKNNRVGDAEDIFDQMEMLGVSRSSVTYNTLINGLCKSKRVEEAAQL 534

Query: 567 VSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE 626
           +  M+ +G  P   TYT ++K     GD   A +++  ++L G   D++ Y T++   C+
Sbjct: 535 MDQMIMEGLKPDKFTYTTMLKYFCQQGDIKRAADIVQNMTLNGCEPDIVTYGTLIGGLCK 594

Query: 627 KGRIDV 632
            GR+DV
Sbjct: 595 AGRVDV 600



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 126/601 (20%), Positives = 229/601 (38%), Gaps = 81/601 (13%)

Query: 31  ANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADD- 89
           ANKL+L  TL + M  +      +T   ++ ALC+  + R + L+L     ++ L  D+ 
Sbjct: 177 ANKLKLVETLHSKMVADAVPPDVSTFNILIRALCKAHQLRPAILMLE-DMPNYGLRPDEK 235

Query: 90  -FFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFL 148
            F  ++       D    +    +M E    L +    +++  LCK G +EEA   IY  
Sbjct: 236 TFTTLMQGFIEEADVEGALRIKELMVESGCELTSVSVNVLVNGLCKEGRIEEALRFIY-- 293

Query: 149 GERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKN 208
            E  G  P    +N+ +    +     H    L++MD  +                    
Sbjct: 294 -EEEGFCPDQVTFNALVNGLCRTG---HIKQGLEMMDFMLE------------------- 330

Query: 209 LSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVAL----------AM 258
                       K + L +++    +    +L ++  A E L HMV+            +
Sbjct: 331 ------------KGFELDVYTYNSLISGLCKLGEIDEAVEILHHMVSRDCEPNTVTYNTL 378

Query: 259 MGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQ 318
           +G L      E     +R  +      LP +     +F+ +I     T N  +A +L  +
Sbjct: 379 IGTLCKENHVEAATELAR--VLTSKGVLPDV----CTFNSLIQGLCLTSNREIAMELFEE 432

Query: 319 MQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALE 378
           M+  G  P   TY   I ++ S+R L+  + +LK M+ +          TL     K   
Sbjct: 433 MKEKGCDPDEFTYSILIESLCSERRLKEALMLLKEMELSGCARNVVVYNTLIDGLCKNNR 492

Query: 379 LDLAEALLDQ-----ISRCTNPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTY 432
           +  AE + DQ     +SR +    ++  +       + E A ++  +M  + L+PD  TY
Sbjct: 493 VGDAEDIFDQMEMLGVSRSS--VTYNTLINGLCKSKRVEEAAQLMDQMIMEGLKPDKFTY 550

Query: 433 ELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGM 492
             +                F Q    KR   I  +M  N  +   ++   L+  L   G 
Sbjct: 551 TTML-------------KYFCQQGDIKRAADIVQNMTLNGCEPDIVTYGTLIGGLCKAGR 597

Query: 493 I---RELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNI 549
           +    +L++        L    YN V+ +L + + +  AM +F++M   G PP+  TY I
Sbjct: 598 VDVASKLLRSVQMKGMVLTPQAYNPVIQALCKRKRTKEAMRLFREMMEKGDPPDVITYKI 657

Query: 550 MI-DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLE 608
           +    C+     + A      M+  G  P+  ++  L + L      D  + L+++V  +
Sbjct: 658 VFRGLCNGGGPIQEAVDFTVEMLEKGILPEFPSFGFLAEGLCSLSMEDTLIQLINMVMEK 717

Query: 609 G 609
           G
Sbjct: 718 G 718



 Score = 72.4 bits (176), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 83/354 (23%), Positives = 147/354 (41%), Gaps = 20/354 (5%)

Query: 311 LAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLS 370
           L E L  +M +  + P   T++  IRA+     LR  + +L+ M    L+P + T  TL 
Sbjct: 182 LVETLHSKMVADAVPPDVSTFNILIRALCKAHQLRPAILMLEDMPNYGLRPDEKTFTTLM 241

Query: 371 V----ECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLR 426
                E      L + E +++     T+          C    + E A++ F    +   
Sbjct: 242 QGFIEEADVEGALRIKELMVESGCELTSVSVNVLVNGLCKE-GRIEEALR-FIYEEEGFC 299

Query: 427 PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI--NAIEMDMARNNIQHSHISMKNLL 484
           PD  T+  L      VN     G++   ++    +     E+D+      +++ S+ + L
Sbjct: 300 PDQVTFNAL------VNGLCRTGHIKQGLEMMDFMLEKGFELDV------YTYNSLISGL 347

Query: 485 KALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNA 544
             LG      E++ +         T TYNT++ +L +      A E+ + + + G+ P+ 
Sbjct: 348 CKLGEIDEAVEILHHMVSRDCEPNTVTYNTLIGTLCKENHVEAATELARVLTSKGVLPDV 407

Query: 545 ATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDL 604
            T+N +I    +    + A  L   M   G  P   TY+ LI+ L       EAL LL  
Sbjct: 408 CTFNSLIQGLCLTSNREIAMELFEEMKEKGCDPDEFTYSILIESLCSERRLKEALMLLKE 467

Query: 605 VSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
           + L G   +V++YNT++   C+  R+   E I +QM    V     T + + +G
Sbjct: 468 MELSGCARNVVVYNTLIDGLCKNNRVGDAEDIFDQMEMLGVSRSSVTYNTLING 521



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 88/426 (20%), Positives = 166/426 (38%), Gaps = 57/426 (13%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +F+ +I A  +      A  ++  M + GL+P   T+   ++  + +  +   + + ++M
Sbjct: 201 TFNILIRALCKAHQLRPAILMLEDMPNYGLRPDEKTFTTLMQGFIEEADVEGALRIKELM 260

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEAL---LDQISRCTNPKPFSAFLAACDTMDKP 411
            ++  +    ++  L     K  E  + EAL    ++   C +   F+A +         
Sbjct: 261 VESGCELTSVSVNVLVNGLCK--EGRIEEALRFIYEEEGFCPDQVTFNALVNGLCRTGHI 318

Query: 412 ERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           ++ +++   M +K    D+ TY  L S    +           ++D A  I      M  
Sbjct: 319 KQGLEMMDFMLEKGFELDVYTYNSLISGLCKLG----------EIDEAVEILH---HMVS 365

Query: 471 NNIQHSHISMKNLLKALGAEGMIR---ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHR 527
            + + + ++   L+  L  E  +    EL +            T+N+++  L        
Sbjct: 366 RDCEPNTVTYNTLIGTLCKENHVEAATELARVLTSKGVLPDVCTFNSLIQGLCLTSNREI 425

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM----------------- 570
           AME+F++MK  G  P+  TY+I+I+     R  K A  L+  M                 
Sbjct: 426 AMELFEEMKEKGCDPDEFTYSILIESLCSERRLKEALMLLKEMELSGCARNVVVYNTLID 485

Query: 571 -------VRD-----------GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPH 612
                  V D           G    ++TY  LI  L      +EA  L+D + +EG+  
Sbjct: 486 GLCKNNRVGDAEDIFDQMEMLGVSRSSVTYNTLINGLCKSKRVEEAAQLMDQMIMEGLKP 545

Query: 613 DVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEAL 672
           D   Y T+LK  C++G I     I++ M  N  +PD  T   +  G    G  + A + L
Sbjct: 546 DKFTYTTMLKYFCQQGDIKRAADIVQNMTLNGCEPDIVTYGTLIGGLCKAGRVDVASKLL 605

Query: 673 QVLSMR 678
           + + M+
Sbjct: 606 RSVQMK 611



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/266 (21%), Positives = 112/266 (42%), Gaps = 18/266 (6%)

Query: 425 LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLL 484
           ++PD R Y +  SL    N    +  +   + S    +A+  D++  NI         L+
Sbjct: 160 VKPDTRFYNVALSLLVKAN----KLKLVETLHSKMVADAVPPDVSTFNI---------LI 206

Query: 485 KALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIP 541
           +AL     +R  I    D       P   T+ T++   +E  +   A+ I + M   G  
Sbjct: 207 RALCKAHQLRPAILMLEDMPNYGLRPDEKTFTTLMQGFIEEADVEGALRIKELMVESGCE 266

Query: 542 PNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNL 601
             + + N++++   + +  +   AL  +   +GF P  +T+ AL+  L   G   + L +
Sbjct: 267 LTSVSVNVLVN--GLCKEGRIEEALRFIYEEEGFCPDQVTFNALVNGLCRTGHIKQGLEM 324

Query: 602 LDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVN 661
           +D +  +G   DV  YN+++   C+ G ID    I+  M     +P+  T + +      
Sbjct: 325 MDFMLEKGFELDVYTYNSLISGLCKLGEIDEAVEILHHMVSRDCEPNTVTYNTLIGTLCK 384

Query: 662 CGFHNSAMEALQVLSMRMLCEEVSTL 687
                +A E  +VL+ + +  +V T 
Sbjct: 385 ENHVEAATELARVLTSKGVLPDVCTF 410


>gi|296081889|emb|CBI20894.3| unnamed protein product [Vitis vinifera]
          Length = 608

 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 80/381 (20%), Positives = 165/381 (43%), Gaps = 21/381 (5%)

Query: 315 LMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECS 374
           ++ Q++  G++P S  ++  I A      ++  M+    M+++  KP  ST  TL     
Sbjct: 129 IISQVEENGMEPDSIFFNAVINAFSESGNMQEAMKYFWKMKESGSKPTTSTFNTLIKGYG 188

Query: 375 KALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDKPERAIKIFAKM-RQKLRPDI 429
            A E + ++ LL+ +S+  N +P    ++  + A        +A  +  KM    L+PD 
Sbjct: 189 IAGEPEESQKLLELMSQDENVRPNLRTYNVLVRAWCNKKNIMKAWNVVYKMVASGLQPDA 248

Query: 430 RTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGA 489
            TY  +                ++Q   A +   I ++M  +N+Q +  +   ++     
Sbjct: 249 VTYNTI-------------ATAYAQNGEASQAEGIILEMQNSNVQPNERTCCIIIGGYCK 295

Query: 490 EGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAAT 546
           EG I+E +Q+    K     P    +N+++   ++A +     E+   M+  G+ P+  T
Sbjct: 296 EGKIKEALQFVYRMKDLGLQPNLVVFNSLIKGFIDAVDRDGVNEVLTLMEEFGVKPDVIT 355

Query: 547 YNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVS 606
           ++ +++  S          +   MV+    P    Y+ L K  +  G+ ++A  +L+ + 
Sbjct: 356 FSTIMNAWSAAGFMDKCREIFDDMVKARIQPDAHVYSILAKGYVRAGEPEKAEEILNAMI 415

Query: 607 LEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHN 666
             G   +V+++ TI+   C  GR++    I E+M +  + P+  T   +  GY       
Sbjct: 416 KSGFHPNVVIFTTIINGWCSAGRMEYAIKIFEKMCECGIAPNLKTFETLIWGYGEARQPW 475

Query: 667 SAMEALQVLSMRMLCEEVSTL 687
            + E LQ++    +  E +TL
Sbjct: 476 KSEEVLQIMEEFNVQPEKTTL 496



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 85/216 (39%), Gaps = 36/216 (16%)

Query: 461 INAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLV 520
           I++I   +  N ++   I    ++ A    G ++E ++YF                    
Sbjct: 126 IHSIISQVEENGMEPDSIFFNAVINAFSESGNMQEAMKYFW------------------- 166

Query: 521 EAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRD-GFYPQT 579
                        +MK  G  P  +T+N +I    I    + +  L+ +M +D    P  
Sbjct: 167 -------------KMKESGSKPTTSTFNTLIKGYGIAGEPEESQKLLELMSQDENVRPNL 213

Query: 580 MTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQ 639
            TY  L++   +  +  +A N++  +   G+  D + YNTI     + G     E II +
Sbjct: 214 RTYNVLVRAWCNKKNIMKAWNVVYKMVASGLQPDAVTYNTIATAYAQNGEASQAEGIILE 273

Query: 640 MHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
           M  + VQP+  TC  +  GY   G      EALQ +
Sbjct: 274 MQNSNVQPNERTCCIIIGGYCKEG---KIKEALQFV 306



 Score = 47.4 bits (111), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 43/221 (19%), Positives = 99/221 (44%), Gaps = 9/221 (4%)

Query: 443 NAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCD 502
           +AP E  +  + V   + + A++ ++ R + +H    +  + ++   +  +R +    C 
Sbjct: 12  DAPTEHQDGTTDVKK-EEVEALQTEVKRRDGKHE---LHPVSQSADPQSQVRCI---SCL 64

Query: 503 SKTPLGTPTYNT-VLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFK 561
           SKT   T    T +++ ++E         I   +   G  P+  TY  ++   +I + F 
Sbjct: 65  SKTSCRTVRSRTKLMNIMIEKGRPQEVQSILDSIIEGGHKPSLVTYTTLLAALTIQKHFD 124

Query: 562 SASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTIL 621
           S  +++S +  +G  P ++ + A+I    + G+  EA+     +   G       +NT++
Sbjct: 125 SIHSIISQVEENGMEPDSIFFNAVINAFSESGNMQEAMKYFWKMKESGSKPTTSTFNTLI 184

Query: 622 KKACEKGRIDVIEFIIEQMHQNK-VQPDPSTCHFVFSGYVN 661
           K     G  +  + ++E M Q++ V+P+  T + +   + N
Sbjct: 185 KGYGIAGEPEESQKLLELMSQDENVRPNLRTYNVLVRAWCN 225



 Score = 45.4 bits (106), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 70/344 (20%), Positives = 137/344 (39%), Gaps = 28/344 (8%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ ++ A    +N   A  ++ +M + GLQP + TY+    A   +        ++  M
Sbjct: 215 TYNVLVRAWCNKKNIMKAWNVVYKMVASGLQPDAVTYNTIATAYAQNGEASQAEGIILEM 274

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEAL-----LDQISRCTNPKPFSAFLAA-CDTM 408
           Q +N++P + T   +     K  E  + EAL     +  +    N   F++ +    D +
Sbjct: 275 QNSNVQPNERTCCIIIGGYCK--EGKIKEALQFVYRMKDLGLQPNLVVFNSLIKGFIDAV 332

Query: 409 DKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMD 467
           D+ +   ++   M +  ++PD+ T+  +              N +S      +   I  D
Sbjct: 333 DR-DGVNEVLTLMEEFGVKPDVITFSTIM-------------NAWSAAGFMDKCREIFDD 378

Query: 468 MARNNIQ-HSH---ISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQ 523
           M +  IQ  +H   I  K  ++A G      E++     S        + T+++    A 
Sbjct: 379 MVKARIQPDAHVYSILAKGYVRA-GEPEKAEEILNAMIKSGFHPNVVIFTTIINGWCSAG 437

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
               A++IF++M  CGI PN  T+  +I      R    +  ++ +M      P+  T  
Sbjct: 438 RMEYAIKIFEKMCECGIAPNLKTFETLIWGYGEARQPWKSEEVLQIMEEFNVQPEKTTLL 497

Query: 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEK 627
            + +     G   EA  +L  V  E + H+    + I   + EK
Sbjct: 498 LVAEAWRATGLKKEANRILSAVKNEEMTHETDREDKIPVGSLEK 541



 Score = 42.4 bits (98), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 24/116 (20%), Positives = 52/116 (44%)

Query: 561 KSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTI 620
           +   +++  ++  G  P  +TYT L+  L     FD   +++  V   G+  D + +N +
Sbjct: 89  QEVQSILDSIIEGGHKPSLVTYTTLLAALTIQKHFDSIHSIISQVEENGMEPDSIFFNAV 148

Query: 621 LKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
           +    E G +        +M ++  +P  ST + +  GY   G    + + L+++S
Sbjct: 149 INAFSESGNMQEAMKYFWKMKESGSKPTTSTFNTLIKGYGIAGEPEESQKLLELMS 204



 Score = 41.2 bits (95), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 87/217 (40%), Gaps = 26/217 (11%)

Query: 552 DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIP 611
           D  S +RC    S      VR        + T L+ I+++ G   E  ++LD +   G  
Sbjct: 53  DPQSQVRCISCLSKTSCRTVR--------SRTKLMNIMIEKGRPQEVQSILDSIIEGGHK 104

Query: 612 HDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEA 671
             ++ Y T+L     +   D I  II Q+ +N ++PD    + V + +   G    AM+ 
Sbjct: 105 PSLVTYTTLLAALTIQKHFDSIHSIISQVEENGMEPDSIFFNAVINAFSESGNMQEAMKY 164

Query: 672 LQVLSMRMLCEEVSTLEEKRSDFEDLI----LAEDSEAESRILQFC---EDSNENLAFTA 724
              +       + S  +   S F  LI    +A + E   ++L+     E+   NL  T 
Sbjct: 165 FWKM-------KESGSKPTTSTFNTLIKGYGIAGEPEESQKLLELMSQDENVRPNLR-TY 216

Query: 725 ALLQLRWCTIVGFPISWSLDR---ASGLEDSQTNSNS 758
            +L   WC       +W++     ASGL+      N+
Sbjct: 217 NVLVRAWCNKKNIMKAWNVVYKMVASGLQPDAVTYNT 253


>gi|15229568|ref|NP_188429.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274006|sp|Q9LSK8.1|PP240_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g18020
 gi|11994208|dbj|BAB01330.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642514|gb|AEE76035.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 688

 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 110/529 (20%), Positives = 219/529 (41%), Gaps = 42/529 (7%)

Query: 147 FLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQ 206
            +G +    P L  YN  +     ++ ++ A+  +  M +R    + VT+T L+      
Sbjct: 151 LIGFKKEFVPSLTNYNRLMNQLCTIYRVIDAHKLVFDMRNRGHLPDVVTFTTLIGGYCEI 210

Query: 207 KNLSAVHEIWEDY----IKHYSLSIFSLRKFVWSFTRLRD-------LKSAYETLQHMVA 255
           + L   H+++++     I+  SL++  L   +  F ++RD       +K  +E +++   
Sbjct: 211 RELEVAHKVFDEMRVCGIRPNSLTLSVL---IGGFLKMRDVETGRKLMKELWEYMKNETD 267

Query: 256 LAMMGKLYINRTS----EGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGL 311
            +M    + N       EG   +   +I   ++    + V  +++  +I +  R + +  
Sbjct: 268 TSMKAAAFANLVDSMCREGYF-NDIFEIAENMSLCESVNV-EFAYGHMIDSLCRYRRNHG 325

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A +++  M+S GL+P   +Y+  I  +  D G     ++L+   +    P + T   L  
Sbjct: 326 AARIVYIMKSKGLKPRRTSYNAIIHGLCKDGGCMRAYQLLEEGSEFEFFPSEYTYKLLME 385

Query: 372 ECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRP 427
              K L+   A  +L+ + R       + ++ +L     MD P   + +   M Q   RP
Sbjct: 386 SLCKELDTGKARNVLELMLRKEGADRTRIYNIYLRGLCVMDNPTEILNVLVSMLQGDCRP 445

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL 487
           D       ++L   +N   + G    +VD A ++  ++  M         +++  ++  L
Sbjct: 446 D------EYTLNTVINGLCKMG----RVDDAMKV--LDDMMTGKFCAPDAVTLNTVMCGL 493

Query: 488 GAEGMIRE----LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPN 543
            A+G   E    L +   ++K   G   YN V+  L +  +   AM +F Q++   +  +
Sbjct: 494 LAQGRAEEALDVLNRVMPENKIKPGVVAYNAVIRGLFKLHKGDEAMSVFGQLEKASVTAD 553

Query: 544 AATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL- 602
           + TY I+ID   +      A      ++          Y A +K L   G   +A + L 
Sbjct: 554 STTYAIIIDGLCVTNKVDMAKKFWDDVIWPSGRHDAFVYAAFLKGLCQSGYLSDACHFLY 613

Query: 603 DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
           DL     IP +V+ YNT++ +    G       I+E+M +N   PD  T
Sbjct: 614 DLADSGAIP-NVVCYNTVIAECSRSGLKREAYQILEEMRKNGQAPDAVT 661



 Score = 55.8 bits (133), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 71/320 (22%), Positives = 129/320 (40%), Gaps = 24/320 (7%)

Query: 373 CSKALELDLAEALLDQISRCTNPK--PFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDI 429
           C+    +D  + + D  +R   P    F+  +     + + E A K+F +MR   +RP+ 
Sbjct: 173 CTIYRVIDAHKLVFDMRNRGHLPDVVTFTTLIGGYCEIRELEVAHKVFDEMRVCGIRPNS 232

Query: 430 RTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHS--HISMKNLLKAL 487
            T  +L   F  +            V++ +++     +  +N    S    +  NL+ ++
Sbjct: 233 LTLSVLIGGFLKMR----------DVETGRKLMKELWEYMKNETDTSMKAAAFANLVDSM 282

Query: 488 GAEGMIRELIQY-----FCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPP 542
             EG   ++ +       C+S        Y  ++ SL   + +H A  I   MK+ G+ P
Sbjct: 283 CREGYFNDIFEIAENMSLCESVNV--EFAYGHMIDSLCRYRRNHGAARIVYIMKSKGLKP 340

Query: 543 NAATYNIMI-DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNL 601
              +YN +I   C    C + A  L+       F+P   TY  L++ L    D  +A N+
Sbjct: 341 RRTSYNAIIHGLCKDGGCMR-AYQLLEEGSEFEFFPSEYTYKLLMESLCKELDTGKARNV 399

Query: 602 LDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVN 661
           L+L+  +       +YN  L+  C       I  ++  M Q   +PD  T + V +G   
Sbjct: 400 LELMLRKEGADRTRIYNIYLRGLCVMDNPTEILNVLVSMLQGDCRPDEYTLNTVINGLCK 459

Query: 662 CGFHNSAMEALQVLSMRMLC 681
            G  + AM+ L  +     C
Sbjct: 460 MGRVDDAMKVLDDMMTGKFC 479


>gi|222623994|gb|EEE58126.1| hypothetical protein OsJ_09025 [Oryza sativa Japonica Group]
          Length = 1269

 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 112/579 (19%), Positives = 233/579 (40%), Gaps = 63/579 (10%)

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
           M E+  GLN   Y +++  LC+ G +EEA      + E YG+ P    Y + +    K  
Sbjct: 248 MRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDM-EDYGLVPDGFTYGALINGLCKSR 306

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRK 232
               A   LD M    +  N V Y  L+                                
Sbjct: 307 RSNEAKALLDEMSCAELKPNVVVYANLID------------------------------- 335

Query: 233 FVWSFTRLRDLKSAYETLQHMVALAMM-GKLYINRTSEGRLRSSRLDIPIPLNALPVMKV 291
               F R  +   A++ ++ MVA  +   K+  +    G  +  ++D      +L + ++
Sbjct: 336 ---GFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMD----RASLLLKQM 388

Query: 292 LRWS-------FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGL 344
           +R S       ++ +I    R  +   A +L+ +M++ G+ P+ +TY   I  +      
Sbjct: 389 VRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEP 448

Query: 345 RNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSA 400
               ++L+ M    LKP     A L     +   + LA  + D++++  N  P    +++
Sbjct: 449 EKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTK-VNVLPDLYCYNS 507

Query: 401 FLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAK 459
            +     + + E + K FA+M+++ L P+  TY       G ++   + G++ S     +
Sbjct: 508 LIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYS------GLIHGYLKNGDLESAEQLVQ 561

Query: 460 RINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSL 519
           R+  ++  +  N++ +  + +++  K+   E  +    +   D    L    Y  ++H+L
Sbjct: 562 RM--LDTGLKPNDVIYIDL-LESYFKSDDIE-KVSSTFKSMLDQGVMLDNRIYGILIHNL 617

Query: 520 VEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQT 579
             +     A  +   ++  G  P+   Y+ +I         + A  ++  M + G  P  
Sbjct: 618 SSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNI 677

Query: 580 MTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQ 639
           + Y ALI  L   GD   A N+ + +  +G+  + + Y +++  +C+ G I    ++  +
Sbjct: 678 VCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNE 737

Query: 640 MHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678
           M    + PD      + +G  + G    AM  ++ + +R
Sbjct: 738 MLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLR 776



 Score = 79.7 bits (195), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 86/373 (23%), Positives = 146/373 (39%), Gaps = 53/373 (14%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A++++++M+  G   ++ TY+  I  +     +       K M+   L P   T   L  
Sbjct: 241 AKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALIN 300

Query: 372 ECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRT 431
              K+   + A+ALLD++S C                               +L+P++  
Sbjct: 301 GLCKSRRSNEAKALLDEMS-CA------------------------------ELKPNVVV 329

Query: 432 YELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEG 491
           Y  L   F        EGN     D A ++     +M    +Q + I+  NL++ L   G
Sbjct: 330 YANLIDGF------MREGN----ADEAFKMIK---EMVAAGVQPNKITYDNLVRGLCKMG 376

Query: 492 MIRE----LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATY 547
            +      L Q   DS  P  T TYN ++           A  +  +M+  GI PN  TY
Sbjct: 377 QMDRASLLLKQMVRDSHRP-DTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTY 435

Query: 548 NIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSL 607
           +IMI         + AS L+  M   G  P    Y  LI      G+   A  + D ++ 
Sbjct: 436 SIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTK 495

Query: 608 EGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNS 667
             +  D+  YN+++    + GR++       QM +  + P+     F +SG ++    N 
Sbjct: 496 VNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPN----EFTYSGLIHGYLKNG 551

Query: 668 AMEALQVLSMRML 680
            +E+ + L  RML
Sbjct: 552 DLESAEQLVQRML 564



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 119/618 (19%), Positives = 227/618 (36%), Gaps = 90/618 (14%)

Query: 55  TQMQIVDALCRGERSRASHLLLN-LGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMM 113
           T   +++ LC+  RS  +  LL+ +  A        + ++++   R  +     +  + M
Sbjct: 294 TYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEM 353

Query: 114 EEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHS 173
               +  N   Y  +++ LCK G ++ AS L+  +  R    P    YN  +    + HS
Sbjct: 354 VAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQM-VRDSHRPDTITYNLIIEGHFRHHS 412

Query: 174 MVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYSLSIFSLRK 232
              A   L  M++  +  N  TY+ ++             ++ E+   K    + F    
Sbjct: 413 KKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAP 472

Query: 233 FVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVL 292
            +  + R  ++  A E    M  + ++  LY   +                        L
Sbjct: 473 LISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNS------------------------L 508

Query: 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
            +  S V    GR + S    +   QMQ  GL P+  TY G I   + +  L +  ++++
Sbjct: 509 IFGLSKV----GRVEES---TKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQ 561

Query: 353 IMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPE 412
            M    LKP D             + +DL E+                        D  E
Sbjct: 562 RMLDTGLKPND------------VIYIDLLESYFKS--------------------DDIE 589

Query: 413 RAIKIFAKM-RQKLRPDIRTYELL---FSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
           +    F  M  Q +  D R Y +L    S  GN+ A +            + ++ IE + 
Sbjct: 590 KVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAF------------RVLSGIEKNG 637

Query: 469 ARNNIQHSHISMKNLLKALGAE---GMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQES 525
           +  ++      +  L K    E   G++ E+ +   D         YN ++  L ++ + 
Sbjct: 638 SVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIV----CYNALIDGLCKSGDI 693

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
             A  +F  +   G+ PN  TY  +ID    +    +A  L + M+  G  P    Y+ L
Sbjct: 694 SYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVL 753

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
                  GD ++A+ L++ + L G    +  +N ++   C++G++     ++  +    +
Sbjct: 754 TTGCSSAGDLEQAMFLIEEMFLRG-HASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGL 812

Query: 646 QPDPSTCHFVFSGYVNCG 663
            P+  T   + SG    G
Sbjct: 813 VPNALTIENIISGLSEAG 830



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/200 (21%), Positives = 82/200 (41%), Gaps = 38/200 (19%)

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           + + L +  + +E   A ++  +M+  G   N  TYN++I         + A      M 
Sbjct: 225 HGSALEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDME 284

Query: 572 RDGFYPQTMTYTALI------------KILLD-----------------------YGDFD 596
             G  P   TY ALI            K LLD                        G+ D
Sbjct: 285 DYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNAD 344

Query: 597 EALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVF 656
           EA  ++  +   G+  + + Y+ +++  C+ G++D    +++QM ++  +PD  T + + 
Sbjct: 345 EAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLII 404

Query: 657 SGYVNCGFHNSAMEALQVLS 676
            G+     H+S  +A ++LS
Sbjct: 405 EGHFR---HHSKKDAFRLLS 421



 Score = 44.3 bits (103), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 117/606 (19%), Positives = 222/606 (36%), Gaps = 94/606 (15%)

Query: 52  SKATQMQIVDALCR-GERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETW 110
           +K T   +V  LC+ G+  RAS LL  +    H      +  I+    R           
Sbjct: 361 NKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLL 420

Query: 111 RMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNL-------------------------- 144
             ME   I  N   Y +M+  LC+ G  E+AS+L                          
Sbjct: 421 SEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCRE 480

Query: 145 --------IYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTY 196
                   I+    +  + P L  YNS +   +K+  +  +      M  R +  NE TY
Sbjct: 481 GNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTY 540

Query: 197 TELLKLAVWQKNLSA----VHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQH 252
           + L+   +   +L +    V  + +  +K   +    L +   S+ +  D++    T + 
Sbjct: 541 SGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLE---SYFKSDDIEKVSSTFKS 597

Query: 253 MVALAMM------GKLYINRTSEGRLRSS-RLDIPIPLN-ALPVMKVLRWSFSDVIHACG 304
           M+   +M      G L  N +S G + ++ R+   I  N ++P + V    +S +I    
Sbjct: 598 MLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHV----YSSLISGLC 653

Query: 305 RTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDS 364
           +T +   A  ++ +M   G+ P+   Y+  I  +     +     V   +    L P   
Sbjct: 654 KTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCV 713

Query: 365 TIATLSVECSKALELDLAEALLDQ-ISRCTNPKPF--SAFLAACDTMDKPERAIKIFAKM 421
           T  +L     K  ++  A  L ++ ++    P  F  S     C +    E+A+ +  +M
Sbjct: 714 TYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEM 773

Query: 422 RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMK 481
             +    I ++  L   F       + G M       + +  + + M R  + ++ ++++
Sbjct: 774 FLRGHASISSFNNLVDGF------CKRGKM------QETLKLLHVIMGRGLVPNA-LTIE 820

Query: 482 NLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIP 541
           N++  L   G + E+   F +             L        +     +F  M   G  
Sbjct: 821 NIISGLSEAGKLSEVHTIFVE-------------LQQKTSESAARHFSSLFMDMINQGKI 867

Query: 542 PNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTM-----TYTALIKILLDYGDFD 596
           P     +++ D C      K  +   ++M+RD    ++      +Y A++  L   G   
Sbjct: 868 PLDVVDDMIRDHC------KEGNLDKALMLRDVIVAKSAPMGCSSYLAIVDNLCRKGKLS 921

Query: 597 EALNLL 602
           EALNLL
Sbjct: 922 EALNLL 927


>gi|225430029|ref|XP_002281569.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g25630-like [Vitis vinifera]
          Length = 635

 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 80/381 (20%), Positives = 165/381 (43%), Gaps = 21/381 (5%)

Query: 315 LMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECS 374
           ++ Q++  G++P S  ++  I A      ++  M+    M+++  KP  ST  TL     
Sbjct: 129 IISQVEENGMEPDSIFFNAVINAFSESGNMQEAMKYFWKMKESGSKPTTSTFNTLIKGYG 188

Query: 375 KALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDKPERAIKIFAKM-RQKLRPDI 429
            A E + ++ LL+ +S+  N +P    ++  + A        +A  +  KM    L+PD 
Sbjct: 189 IAGEPEESQKLLELMSQDENVRPNLRTYNVLVRAWCNKKNIMKAWNVVYKMVASGLQPDA 248

Query: 430 RTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGA 489
            TY  +                ++Q   A +   I ++M  +N+Q +  +   ++     
Sbjct: 249 VTYNTI-------------ATAYAQNGEASQAEGIILEMQNSNVQPNERTCCIIIGGYCK 295

Query: 490 EGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAAT 546
           EG I+E +Q+    K     P    +N+++   ++A +     E+   M+  G+ P+  T
Sbjct: 296 EGKIKEALQFVYRMKDLGLQPNLVVFNSLIKGFIDAVDRDGVNEVLTLMEEFGVKPDVIT 355

Query: 547 YNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVS 606
           ++ +++  S          +   MV+    P    Y+ L K  +  G+ ++A  +L+ + 
Sbjct: 356 FSTIMNAWSAAGFMDKCREIFDDMVKARIQPDAHVYSILAKGYVRAGEPEKAEEILNAMI 415

Query: 607 LEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHN 666
             G   +V+++ TI+   C  GR++    I E+M +  + P+  T   +  GY       
Sbjct: 416 KSGFHPNVVIFTTIINGWCSAGRMEYAIKIFEKMCECGIAPNLKTFETLIWGYGEARQPW 475

Query: 667 SAMEALQVLSMRMLCEEVSTL 687
            + E LQ++    +  E +TL
Sbjct: 476 KSEEVLQIMEEFNVQPEKTTL 496



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 85/216 (39%), Gaps = 36/216 (16%)

Query: 461 INAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLV 520
           I++I   +  N ++   I    ++ A    G ++E ++YF                    
Sbjct: 126 IHSIISQVEENGMEPDSIFFNAVINAFSESGNMQEAMKYFW------------------- 166

Query: 521 EAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRD-GFYPQT 579
                        +MK  G  P  +T+N +I    I    + +  L+ +M +D    P  
Sbjct: 167 -------------KMKESGSKPTTSTFNTLIKGYGIAGEPEESQKLLELMSQDENVRPNL 213

Query: 580 MTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQ 639
            TY  L++   +  +  +A N++  +   G+  D + YNTI     + G     E II +
Sbjct: 214 RTYNVLVRAWCNKKNIMKAWNVVYKMVASGLQPDAVTYNTIATAYAQNGEASQAEGIILE 273

Query: 640 MHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
           M  + VQP+  TC  +  GY   G      EALQ +
Sbjct: 274 MQNSNVQPNERTCCIIIGGYCKEG---KIKEALQFV 306



 Score = 47.4 bits (111), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 43/221 (19%), Positives = 99/221 (44%), Gaps = 9/221 (4%)

Query: 443 NAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCD 502
           +AP E  +  + V   + + A++ ++ R + +H    +  + ++   +  +R +    C 
Sbjct: 12  DAPTEHQDGTTDVKK-EEVEALQTEVKRRDGKHE---LHPVSQSADPQSQVRCI---SCL 64

Query: 503 SKTPLGTPTYNT-VLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFK 561
           SKT   T    T +++ ++E         I   +   G  P+  TY  ++   +I + F 
Sbjct: 65  SKTSCRTVRSRTKLMNIMIEKGRPQEVQSILDSIIEGGHKPSLVTYTTLLAALTIQKHFD 124

Query: 562 SASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTIL 621
           S  +++S +  +G  P ++ + A+I    + G+  EA+     +   G       +NT++
Sbjct: 125 SIHSIISQVEENGMEPDSIFFNAVINAFSESGNMQEAMKYFWKMKESGSKPTTSTFNTLI 184

Query: 622 KKACEKGRIDVIEFIIEQMHQNK-VQPDPSTCHFVFSGYVN 661
           K     G  +  + ++E M Q++ V+P+  T + +   + N
Sbjct: 185 KGYGIAGEPEESQKLLELMSQDENVRPNLRTYNVLVRAWCN 225



 Score = 45.1 bits (105), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 70/344 (20%), Positives = 137/344 (39%), Gaps = 28/344 (8%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ ++ A    +N   A  ++ +M + GLQP + TY+    A   +        ++  M
Sbjct: 215 TYNVLVRAWCNKKNIMKAWNVVYKMVASGLQPDAVTYNTIATAYAQNGEASQAEGIILEM 274

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEAL-----LDQISRCTNPKPFSAFLAA-CDTM 408
           Q +N++P + T   +     K  E  + EAL     +  +    N   F++ +    D +
Sbjct: 275 QNSNVQPNERTCCIIIGGYCK--EGKIKEALQFVYRMKDLGLQPNLVVFNSLIKGFIDAV 332

Query: 409 DKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMD 467
           D+ +   ++   M +  ++PD+ T+  +              N +S      +   I  D
Sbjct: 333 DR-DGVNEVLTLMEEFGVKPDVITFSTIM-------------NAWSAAGFMDKCREIFDD 378

Query: 468 MARNNIQ-HSH---ISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQ 523
           M +  IQ  +H   I  K  ++A G      E++     S        + T+++    A 
Sbjct: 379 MVKARIQPDAHVYSILAKGYVRA-GEPEKAEEILNAMIKSGFHPNVVIFTTIINGWCSAG 437

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
               A++IF++M  CGI PN  T+  +I      R    +  ++ +M      P+  T  
Sbjct: 438 RMEYAIKIFEKMCECGIAPNLKTFETLIWGYGEARQPWKSEEVLQIMEEFNVQPEKTTLL 497

Query: 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEK 627
            + +     G   EA  +L  V  E + H+    + I   + EK
Sbjct: 498 LVAEAWRATGLKKEANRILSAVKNEEMTHETDREDKIPVGSLEK 541



 Score = 42.4 bits (98), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 24/112 (21%), Positives = 51/112 (45%)

Query: 565 ALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKA 624
           +++  ++  G  P  +TYT L+  L     FD   +++  V   G+  D + +N ++   
Sbjct: 93  SILDSIIEGGHKPSLVTYTTLLAALTIQKHFDSIHSIISQVEENGMEPDSIFFNAVINAF 152

Query: 625 CEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
            E G +        +M ++  +P  ST + +  GY   G    + + L+++S
Sbjct: 153 SESGNMQEAMKYFWKMKESGSKPTTSTFNTLIKGYGIAGEPEESQKLLELMS 204



 Score = 40.8 bits (94), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 88/217 (40%), Gaps = 26/217 (11%)

Query: 552 DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIP 611
           D  S +RC    S      VR        + T L+ I+++ G   E  ++LD +   G  
Sbjct: 53  DPQSQVRCISCLSKTSCRTVR--------SRTKLMNIMIEKGRPQEVQSILDSIIEGGHK 104

Query: 612 HDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEA 671
             ++ Y T+L     +   D I  II Q+ +N ++PD    + V + +   G    AM+ 
Sbjct: 105 PSLVTYTTLLAALTIQKHFDSIHSIISQVEENGMEPDSIFFNAVINAFSESGNMQEAMKY 164

Query: 672 LQVLSMRMLCEEVSTLEEKRSDFEDLI----LAEDSEAESRILQFC---EDSNENLAFTA 724
                M+    + +T     S F  LI    +A + E   ++L+     E+   NL  T 
Sbjct: 165 F--WKMKESGSKPTT-----STFNTLIKGYGIAGEPEESQKLLELMSQDENVRPNLR-TY 216

Query: 725 ALLQLRWCTIVGFPISWSLDR---ASGLEDSQTNSNS 758
            +L   WC       +W++     ASGL+      N+
Sbjct: 217 NVLVRAWCNKKNIMKAWNVVYKMVASGLQPDAVTYNT 253


>gi|449508997|ref|XP_004163464.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Cucumis sativus]
          Length = 732

 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 113/531 (21%), Positives = 219/531 (41%), Gaps = 49/531 (9%)

Query: 123 KCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLD 182
           K Y L+++ L  G   + A+N+ Y +  + G+ P +  +   + A    + +  A   L 
Sbjct: 184 KSYDLVLEILVTGNCPQVATNVFYDMLSK-GVSPTVFTFGIVMKALCMFNEVDSACSLLR 242

Query: 183 LMDSRMVGKNEVTYTELLKLAVWQKNL--SAVHEIWEDYIKHYSLSIFSLRKFVWSFTRL 240
            M       N + Y  L+  A+ QKN    A+  + E ++      + +    +    ++
Sbjct: 243 DMTKHGCVPNSIVYQTLIH-ALSQKNQVSEALKLLEEMFVMGCMPDVQTFNDVIHGLCKV 301

Query: 241 RDLKSAYETLQHMVALAMM------GKLYINRTSEGRLRSSR---LDIPIPLNALPVMKV 291
             +  A + +  M+           G L       G+L  +R   + IP P NA+    +
Sbjct: 302 NKIHDATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEARKILIKIPCPNNAILNTLI 361

Query: 292 LRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVL 351
             +  S  +    +   S L E     M + G QP   TY+  +  +  +  L    +++
Sbjct: 362 NGYVMSGQL----KEAQSFLNET----MINFGFQPDIFTYNILMHGLCKEGSLSFARDLV 413

Query: 352 KIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTM 408
             M +   +P   T A L     KA  L+ A  +L ++S      N   ++  + A    
Sbjct: 414 NEMSRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICALCRK 473

Query: 409 DKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI------ 461
           +K   A+ + ++M  K  +PD+ TY  L      V+          ++D A R+      
Sbjct: 474 EKVHVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVD----------RIDEAFRLFHNMLL 523

Query: 462 -NAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLV 520
             A+  ++  N + H+ +      KAL    ++ +++   C     L   TYN ++ +  
Sbjct: 524 DGAVANNVTYNTLIHALLRRGAFQKALT---LVNDMLFRGC----TLDKITYNGLIKAFC 576

Query: 521 EAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTM 580
           +     + +E+++QM   G+  +  + NIMI+    +    +A   +   +  GF P  +
Sbjct: 577 KVGNIEKGLELYEQMIMDGLGADTISCNIMINGLCKVGKVDNAFEFLRDAINRGFVPDIV 636

Query: 581 TYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
           TY +++  L   G   EALNL D + +EG+  D   YNT +   C++G ++
Sbjct: 637 TYNSVLNGLCKVGRIKEALNLFDRLQVEGVRPDAFTYNTFISWQCKEGMVN 687



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 86/384 (22%), Positives = 164/384 (42%), Gaps = 21/384 (5%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           +  +IHA  +      A +L+ +M  +G  P   T++  I  +     + +  +++  M 
Sbjct: 256 YQTLIHALSQKNQVSEALKLLEEMFVMGCMPDVQTFNDVIHGLCKVNKIHDATKLVDRML 315

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAI 415
                P + T   L     +  +L+ A  +L +I  C N    +  +       + + A 
Sbjct: 316 LRGFYPDNMTYGFLLHGLCRIGKLNEARKILIKIP-CPNNAILNTLINGYVMSGQLKEAQ 374

Query: 416 KIFAK--MRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNI 473
               +  +    +PDI TY +L      ++   +EG++    D          +M+R   
Sbjct: 375 SFLNETMINFGFQPDIFTYNIL------MHGLCKEGSLSFARDLVN-------EMSRRGC 421

Query: 474 QHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAME 530
           + + I+   L+  L   G++ E   ++         + +  YN ++ +L   ++ H A+ 
Sbjct: 422 EPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICALCRKEKVHVALN 481

Query: 531 IFKQMKTCGIPPNAATYNIMI-DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
           +  +M T G  P+  TYN +I   C + R    A  L   M+ DG     +TY  LI  L
Sbjct: 482 LLSEMCTKGCKPDLFTYNSLIYGLCKVDR-IDEAFRLFHNMLLDGAVANNVTYNTLIHAL 540

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649
           L  G F +AL L++ +   G   D + YN ++K  C+ G I+    + EQM  + +  D 
Sbjct: 541 LRRGAFQKALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADT 600

Query: 650 STCHFVFSGYVNCGFHNSAMEALQ 673
            +C+ + +G    G  ++A E L+
Sbjct: 601 ISCNIMINGLCKVGKVDNAFEFLR 624



 Score = 73.2 bits (178), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 65/312 (20%), Positives = 122/312 (39%), Gaps = 58/312 (18%)

Query: 410 KPERAIKIFAKMRQKL--RPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMD 467
           +P +AI++   MR      P  ++Y+L+  +    N P    N+F              D
Sbjct: 162 QPGQAIRLLLDMRAVYLCEPTFKSYDLVLEILVTGNCPQVATNVF-------------YD 208

Query: 468 MARNNIQHSHISMKNLLKAL-------GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLV 520
           M    +  +  +   ++KAL        A  ++R++ ++ C    P  +  Y T++H+L 
Sbjct: 209 MLSKGVSPTVFTFGIVMKALCMFNEVDSACSLLRDMTKHGC---VP-NSIVYQTLIHALS 264

Query: 521 EAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTM 580
           +  +   A+++ ++M   G  P+  T+N +I     +     A+ LV  M+  GFYP  M
Sbjct: 265 QKNQVSEALKLLEEMFVMGCMPDVQTFNDVIHGLCKVNKIHDATKLVDRMLLRGFYPDNM 324

Query: 581 TYTALIKILLDYGDFDEALNLLDLVSLE-------------------------------- 608
           TY  L+  L   G  +EA  +L  +                                   
Sbjct: 325 TYGFLLHGLCRIGKLNEARKILIKIPCPNNAILNTLINGYVMSGQLKEAQSFLNETMINF 384

Query: 609 GIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSA 668
           G   D+  YN ++   C++G +     ++ +M +   +P+  T   + +G    G    A
Sbjct: 385 GFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEPNVITYAILVNGLCKAGLLEEA 444

Query: 669 MEALQVLSMRML 680
              L  +S R L
Sbjct: 445 GLVLHEMSARGL 456



 Score = 43.5 bits (101), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 34/178 (19%), Positives = 79/178 (44%), Gaps = 1/178 (0%)

Query: 482 NLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGI- 540
           N L A+G   +I +L+    +         +  ++    +A +  +A+ +   M+   + 
Sbjct: 120 NKLGAIGKFKLIDKLLMQMKEEGIVFRESIFMIIMKHYGKAGQPGQAIRLLLDMRAVYLC 179

Query: 541 PPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALN 600
            P   +Y+++++      C + A+ +   M+  G  P   T+  ++K L  + + D A +
Sbjct: 180 EPTFKSYDLVLEILVTGNCPQVATNVFYDMLSKGVSPTVFTFGIVMKALCMFNEVDSACS 239

Query: 601 LLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
           LL  ++  G   + ++Y T++    +K ++     ++E+M      PD  T + V  G
Sbjct: 240 LLRDMTKHGCVPNSIVYQTLIHALSQKNQVSEALKLLEEMFVMGCMPDVQTFNDVIHG 297


>gi|357118714|ref|XP_003561096.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Brachypodium distachyon]
          Length = 718

 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 88/362 (24%), Positives = 159/362 (43%), Gaps = 25/362 (6%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI----MQQNNLKPQDSTIA 367
           A +L+  M   G+ P+ +TY+  +RA+ + RG R   E L +    M+     P   T  
Sbjct: 138 ARRLLASMLRDGVAPNVYTYNILVRALCA-RGQRE--EALGVVGDDMRGAGCAPNVVTYN 194

Query: 368 TLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDKPERAIKIFAKM-R 422
           TL     +A E+D AE L+  + R    +P    F+  +       + E A K+F +M R
Sbjct: 195 TLVAAFCRAGEVDAAERLVG-VMREGGVRPSLVTFNTVVNGLCKAGRMEDARKMFDEMAR 253

Query: 423 QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKN 482
           + L PD  +Y  L S +      +E   +F+++     +  +   +   ++ H+     N
Sbjct: 254 EGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGVVPDV---VTFTSLIHAMCRAGN 310

Query: 483 LLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPP 542
           L +A+   G +RE           +   T+  ++           A+   K+M+ C I P
Sbjct: 311 LERAVALVGQMRE-------RGLRMNEFTFTALIDGFCRNGFLDDALLAMKEMRECRIQP 363

Query: 543 NAATYNIMIDC-CSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNL 601
           +   YN++I+  C + R    A  L+  M   G  P  +TY+ ++      GD D A  L
Sbjct: 364 SVVCYNVLINGYCKLGR-MDEARELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAFEL 422

Query: 602 LDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVN 661
              +  +G+  D + Y+++++  CE+ R+     + E+M Q  +QPD  T   +  G+  
Sbjct: 423 NRKMLKKGVVPDAITYSSLIRGLCEERRLGDACELFEKMLQLGLQPDEFTYTTLIDGHCK 482

Query: 662 CG 663
            G
Sbjct: 483 EG 484



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 109/248 (43%), Gaps = 18/248 (7%)

Query: 427 PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKA 486
           P++ TY  L + F              +VD+A+R+  +   M    ++ S ++   ++  
Sbjct: 188 PNVVTYNTLVAAFCRAG----------EVDAAERLVGV---MREGGVRPSLVTFNTVVNG 234

Query: 487 LGAEGMIRELIQYFCD----SKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPP 542
           L   G + +  + F +      TP G  +YNT++    +A   H A+ +F +M   G+ P
Sbjct: 235 LCKAGRMEDARKMFDEMAREGLTPDGV-SYNTLVSGYCKAGCLHEALAVFAEMAQKGVVP 293

Query: 543 NAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL 602
           +  T+  +I         + A ALV  M   G      T+TALI      G  D+AL  +
Sbjct: 294 DVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCRNGFLDDALLAM 353

Query: 603 DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNC 662
             +    I   V+ YN ++   C+ GR+D    +I +M    ++PD  T   + SGY   
Sbjct: 354 KEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGYCKI 413

Query: 663 GFHNSAME 670
           G  +SA E
Sbjct: 414 GDTDSAFE 421



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 73/373 (19%), Positives = 159/373 (42%), Gaps = 21/373 (5%)

Query: 294 WSFSDVIHA-CGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
           ++++ ++ A C R Q       +   M+  G  P+  TY+  + A      +     ++ 
Sbjct: 155 YTYNILVRALCARGQREEALGVVGDDMRGAGCAPNVVTYNTLVAAFCRAGEVDAAERLVG 214

Query: 353 IMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMD 409
           +M++  ++P   T  T+     KA  ++ A  + D+++R     +   ++  ++      
Sbjct: 215 VMREGGVRPSLVTFNTVVNGLCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAG 274

Query: 410 KPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
               A+ +FA+M QK + PD+ T+  L      ++A    GN+       +R  A+   M
Sbjct: 275 CLHEALAVFAEMAQKGVVPDVVTFTSL------IHAMCRAGNL-------ERAVALVGQM 321

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPT---YNTVLHSLVEAQES 525
               ++ +  +   L+      G + + +    + +     P+   YN +++   +    
Sbjct: 322 RERGLRMNEFTFTALIDGFCRNGFLDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRM 381

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
             A E+  +M+  G+ P+  TY+ ++     I    SA  L   M++ G  P  +TY++L
Sbjct: 382 DEARELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSL 441

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           I+ L +     +A  L + +   G+  D   Y T++   C++G +     + ++M +  V
Sbjct: 442 IRGLCEERRLGDACELFEKMLQLGLQPDEFTYTTLIDGHCKEGNVQKALSLHDEMIKKGV 501

Query: 646 QPDPSTCHFVFSG 658
            PD  T   +  G
Sbjct: 502 LPDVVTYSVLIDG 514



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/292 (20%), Positives = 124/292 (42%), Gaps = 15/292 (5%)

Query: 398 FSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDS 457
           ++A L A      P     + + +R  + P++ TY +L      V A    G    Q + 
Sbjct: 123 YNAVLLALSDASLPSARRLLASMLRDGVAPNVYTYNIL------VRALCARG----QREE 172

Query: 458 AKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMI---RELIQYFCDSKTPLGTPTYNT 514
           A  +  +  DM       + ++   L+ A    G +     L+    +        T+NT
Sbjct: 173 A--LGVVGDDMRGAGCAPNVVTYNTLVAAFCRAGEVDAAERLVGVMREGGVRPSLVTFNT 230

Query: 515 VLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDG 574
           V++ L +A     A ++F +M   G+ P+  +YN ++       C   A A+ + M + G
Sbjct: 231 VVNGLCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKG 290

Query: 575 FYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIE 634
             P  +T+T+LI  +   G+ + A+ L+  +   G+  +   +  ++   C  G +D   
Sbjct: 291 VVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCRNGFLDDAL 350

Query: 635 FIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
             +++M + ++QP     + + +GY   G  + A E +  +  + +  +V T
Sbjct: 351 LAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVT 402



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 79/360 (21%), Positives = 154/360 (42%), Gaps = 18/360 (5%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ ++ A  R      AE+L+  M+  G++PS  T++  +  +     + +  ++   M
Sbjct: 192 TYNTLVAAFCRAGEVDAAERLVGVMREGGVRPSLVTFNTVVNGLCKAGRMEDARKMFDEM 251

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKP 411
            +  L P   +  TL     KA  L  A A+  ++++     +   F++ + A       
Sbjct: 252 AREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGVVPDVVTFTSLIHAMCRAGNL 311

Query: 412 ERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471
           ERA+ +  +MR++    +R  E  F+    ++     G +   + + K       +M   
Sbjct: 312 ERAVALVGQMRER---GLRMNEFTFTAL--IDGFCRNGFLDDALLAMK-------EMREC 359

Query: 472 NIQHSHISMKNLLKA---LGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRA 528
            IQ S +    L+     LG     RELI             TY+T+L    +  ++  A
Sbjct: 360 RIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSA 419

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
            E+ ++M   G+ P+A TY+ +I      R    A  L   M++ G  P   TYT LI  
Sbjct: 420 FELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDACELFEKMLQLGLQPDEFTYTTLIDG 479

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
               G+  +AL+L D +  +G+  DV+ Y+ ++    +  R    + ++ +++     PD
Sbjct: 480 HCKEGNVQKALSLHDEMIKKGVLPDVVTYSVLIDGLSKSARTKEAQRLLFKLYYEDPVPD 539



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 86/437 (19%), Positives = 162/437 (37%), Gaps = 58/437 (13%)

Query: 128 MMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSR 187
           ++  LCK G +E+A  +   +  R G+ P    YN+ +    K   +  A      M  +
Sbjct: 231 VVNGLCKAGRMEDARKMFDEMA-REGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQK 289

Query: 188 MVGKNEVTYTELLKLAVWQKNLS-AVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSA 246
            V  + VT+T L+       NL  AV  + +   +   ++ F+    +  F R   L  A
Sbjct: 290 GVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCRNGFLDDA 349

Query: 247 YETLQHMVALAMMGKLYI-NRTSEGRLRSSRLDIPIPL---NALPVMKVLRWSFSDVIHA 302
              ++ M    +   +   N    G  +  R+D    L        MK    ++S ++  
Sbjct: 350 LLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSG 409

Query: 303 CGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQ 362
             +  ++  A +L  +M   G+ P + TY   IR +  +R L +  E+ + M Q  L+P 
Sbjct: 410 YCKIGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDACELFEKMLQLGLQPD 469

Query: 363 DSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMR 422
           + T  TL     K   +  A +L D++                               ++
Sbjct: 470 EFTYTTLIDGHCKEGNVQKALSLHDEM-------------------------------IK 498

Query: 423 QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHI---- 478
           + + PD+ TY +L           E   +  ++           D   +NI++  +    
Sbjct: 499 KGVLPDVVTYSVLIDGLSKSARTKEAQRLLFKL--------YYEDPVPDNIKYEALMHCC 550

Query: 479 ------SMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAM 529
                 S+  LLK    +G++ +   + Q   D    L    Y+ ++H         +A+
Sbjct: 551 RTAEFKSVVALLKGFSMKGLMNQADKVYQSMLDRHWKLDGSVYSVLIHGHCRGGNIMKAL 610

Query: 530 EIFKQMKTCGIPPNAAT 546
              KQ+  CG  PN+ +
Sbjct: 611 SFHKQLLRCGFSPNSTS 627



 Score = 52.8 bits (125), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 65/321 (20%), Positives = 129/321 (40%), Gaps = 52/321 (16%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +F+ +IHA  R  N   A  L+ QM+  GL+ +  T+   I     +  L + +  +K M
Sbjct: 297 TFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCRNGFLDDALLAMKEM 356

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERA 414
           ++  ++P        SV C                        ++  +     + + + A
Sbjct: 357 RECRIQP--------SVVC------------------------YNVLINGYCKLGRMDEA 384

Query: 415 IKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNI 473
            ++  +M  K ++PD+ TY  + S +  +             DSA  +N     M +  +
Sbjct: 385 RELIHEMEAKGMKPDVVTYSTILSGYCKIG----------DTDSAFELN---RKMLKKGV 431

Query: 474 QHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP----TYNTVLHSLVEAQESHRAM 529
               I+  +L++ L  E  + +  + F +    LG      TY T++    +     +A+
Sbjct: 432 VPDAITYSSLIRGLCEERRLGDACELF-EKMLQLGLQPDEFTYTTLIDGHCKEGNVQKAL 490

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
            +  +M   G+ P+  TY+++ID  S     K A  L+  +  +   P  + Y AL+   
Sbjct: 491 SLHDEMIKKGVLPDVVTYSVLIDGLSKSARTKEAQRLLFKLYYEDPVPDNIKYEALMHC- 549

Query: 590 LDYGDFDEALNLLDLVSLEGI 610
               +F   + LL   S++G+
Sbjct: 550 CRTAEFKSVVALLKGFSMKGL 570


>gi|115471647|ref|NP_001059422.1| Os07g0300200 [Oryza sativa Japonica Group]
 gi|34394343|dbj|BAC84898.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50509027|dbj|BAD31989.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113610958|dbj|BAF21336.1| Os07g0300200 [Oryza sativa Japonica Group]
          Length = 1013

 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 112/579 (19%), Positives = 233/579 (40%), Gaps = 63/579 (10%)

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
           M E+  GLN   Y +++  LC+ G +EEA      + E YG+ P    Y + +    K  
Sbjct: 270 MRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDM-EDYGLVPDGFTYGALINGLCKSR 328

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRK 232
               A   LD M    +  N V Y  L+                                
Sbjct: 329 RSNEAKALLDEMSCAELKPNVVVYANLID------------------------------- 357

Query: 233 FVWSFTRLRDLKSAYETLQHMVALAMM-GKLYINRTSEGRLRSSRLDIPIPLNALPVMKV 291
               F R  +   A++ ++ MVA  +   K+  +    G  +  ++D      +L + ++
Sbjct: 358 ---GFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRA----SLLLKQM 410

Query: 292 LRWS-------FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGL 344
           +R S       ++ +I    R  +   A +L+ +M++ G+ P+ +TY   I  +      
Sbjct: 411 VRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEP 470

Query: 345 RNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSA 400
               ++L+ M    LKP     A L     +   + LA  + D++++  N  P    +++
Sbjct: 471 EKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTK-VNVLPDLYCYNS 529

Query: 401 FLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAK 459
            +     + + E + K FA+M+++ L P+  TY       G ++   + G++ S     +
Sbjct: 530 LIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYS------GLIHGYLKNGDLESAEQLVQ 583

Query: 460 RINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSL 519
           R+  ++  +  N++ +  + +++  K+   E  +    +   D    L    Y  ++H+L
Sbjct: 584 RM--LDTGLKPNDVIYIDL-LESYFKSDDIE-KVSSTFKSMLDQGVMLDNRIYGILIHNL 639

Query: 520 VEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQT 579
             +     A  +   ++  G  P+   Y+ +I         + A  ++  M + G  P  
Sbjct: 640 SSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNI 699

Query: 580 MTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQ 639
           + Y ALI  L   GD   A N+ + +  +G+  + + Y +++  +C+ G I    ++  +
Sbjct: 700 VCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNE 759

Query: 640 MHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678
           M    + PD      + +G  + G    AM  ++ + +R
Sbjct: 760 MLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLR 798



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 89/391 (22%), Positives = 155/391 (39%), Gaps = 53/391 (13%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           +++S +I A  + +    A++++++M+  G   ++ TY+  I  +     +       K 
Sbjct: 245 YTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKD 304

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPER 413
           M+   L P   T   L     K+   + A+ALLD++S C                     
Sbjct: 305 MEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMS-CA-------------------- 343

Query: 414 AIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNI 473
                     +L+P++  Y  L   F        EGN     D A ++     +M    +
Sbjct: 344 ----------ELKPNVVVYANLIDGF------MREGN----ADEAFKMIK---EMVAAGV 380

Query: 474 QHSHISMKNLLKALGAEGMIRE----LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAM 529
           Q + I+  NL++ L   G +      L Q   DS  P  T TYN ++           A 
Sbjct: 381 QPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRP-DTITYNLIIEGHFRHHSKKDAF 439

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
            +  +M+  GI PN  TY+IMI         + AS L+  M   G  P    Y  LI   
Sbjct: 440 RLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGY 499

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649
              G+   A  + D ++   +  D+  YN+++    + GR++       QM +  + P+ 
Sbjct: 500 CREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPN- 558

Query: 650 STCHFVFSGYVNCGFHNSAMEALQVLSMRML 680
               F +SG ++    N  +E+ + L  RML
Sbjct: 559 ---EFTYSGLIHGYLKNGDLESAEQLVQRML 586



 Score = 69.3 bits (168), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 119/618 (19%), Positives = 227/618 (36%), Gaps = 90/618 (14%)

Query: 55  TQMQIVDALCRGERSRASHLLLN-LGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMM 113
           T   +++ LC+  RS  +  LL+ +  A        + ++++   R  +     +  + M
Sbjct: 316 TYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEM 375

Query: 114 EEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHS 173
               +  N   Y  +++ LCK G ++ AS L+  +  R    P    YN  +    + HS
Sbjct: 376 VAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQM-VRDSHRPDTITYNLIIEGHFRHHS 434

Query: 174 MVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYSLSIFSLRK 232
              A   L  M++  +  N  TY+ ++             ++ E+   K    + F    
Sbjct: 435 KKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAP 494

Query: 233 FVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVL 292
            +  + R  ++  A E    M  + ++  LY   +                        L
Sbjct: 495 LISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNS------------------------L 530

Query: 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
            +  S V    GR + S    +   QMQ  GL P+  TY G I   + +  L +  ++++
Sbjct: 531 IFGLSKV----GRVEES---TKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQ 583

Query: 353 IMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPE 412
            M    LKP D             + +DL E+                        D  E
Sbjct: 584 RMLDTGLKPND------------VIYIDLLESYFKS--------------------DDIE 611

Query: 413 RAIKIFAKM-RQKLRPDIRTYELL---FSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
           +    F  M  Q +  D R Y +L    S  GN+ A +            + ++ IE + 
Sbjct: 612 KVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAF------------RVLSGIEKNG 659

Query: 469 ARNNIQHSHISMKNLLKALGAE---GMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQES 525
           +  ++      +  L K    E   G++ E+ +   D         YN ++  L ++ + 
Sbjct: 660 SVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIV----CYNALIDGLCKSGDI 715

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
             A  +F  +   G+ PN  TY  +ID    +    +A  L + M+  G  P    Y+ L
Sbjct: 716 SYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVL 775

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
                  GD ++A+ L++ + L G    +  +N ++   C++G++     ++  +    +
Sbjct: 776 TTGCSSAGDLEQAMFLIEEMFLRG-HASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGL 834

Query: 646 QPDPSTCHFVFSGYVNCG 663
            P+  T   + SG    G
Sbjct: 835 VPNALTIENIISGLSEAG 852



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/232 (21%), Positives = 100/232 (43%), Gaps = 39/232 (16%)

Query: 480 MKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCG 539
           +K+LL+A  A  ++ ++ ++   +       TY+T++ +  + +E   A ++  +M+  G
Sbjct: 216 LKDLLRA-DAMALLWKVREFMVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERG 274

Query: 540 IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI------------K 587
              N  TYN++I         + A      M   G  P   TY ALI            K
Sbjct: 275 CGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAK 334

Query: 588 ILLD-----------------------YGDFDEALNLLDLVSLEGIPHDVLLYNTILKKA 624
            LLD                        G+ DEA  ++  +   G+  + + Y+ +++  
Sbjct: 335 ALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGL 394

Query: 625 CEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
           C+ G++D    +++QM ++  +PD  T + +  G+     H+S  +A ++LS
Sbjct: 395 CKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFR---HHSKKDAFRLLS 443



 Score = 48.9 bits (115), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 35/161 (21%), Positives = 72/161 (44%)

Query: 513 NTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVR 572
           N +L  L+ A       ++ + M   GI P+  TY+ +I+    +R F +A  ++  M  
Sbjct: 213 NALLKDLLRADAMALLWKVREFMVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRE 272

Query: 573 DGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDV 632
            G    T+TY  LI  L   G  +EA      +   G+  D   Y  ++   C+  R + 
Sbjct: 273 RGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNE 332

Query: 633 IEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
            + ++++M   +++P+      +  G++  G  + A + ++
Sbjct: 333 AKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIK 373



 Score = 47.0 bits (110), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 117/589 (19%), Positives = 212/589 (35%), Gaps = 108/589 (18%)

Query: 52  SKATQMQIVDALCR-GERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETW 110
           +K T   +V  LC+ G+  RAS LL  +    H      +  I+    R           
Sbjct: 383 NKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLL 442

Query: 111 RMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLG---- 166
             ME   I  N   Y +M+  LC+ G  E+AS+L+  +  + G+ P   VY   +     
Sbjct: 443 SEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTK-GLKPNAFVYAPLISGYCR 501

Query: 167 ------ACAKLHSMVHANLCLDL-------------------------MDSRMVGKNEVT 195
                 AC     M   N+  DL                         M  R +  NE T
Sbjct: 502 EGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFT 561

Query: 196 YTELLKLAVWQKNLSA----VHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQ 251
           Y+ L+   +   +L +    V  + +  +K   +    L   + S+ +  D++    T +
Sbjct: 562 YSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDL---LESYFKSDDIEKVSSTFK 618

Query: 252 HMVALAMM------GKLYINRTSEGRLRSS-RLDIPIPLN-ALPVMKVLRWSFSDVIHAC 303
            M+   +M      G L  N +S G + ++ R+   I  N ++P + V     S +    
Sbjct: 619 SMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTA 678

Query: 304 GRTQNSGL-------------------------------AEQLMLQMQSLGLQPSSHTYD 332
            R +  G+                               A  +   + + GL P+  TY 
Sbjct: 679 DREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYT 738

Query: 333 GFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ--IS 390
             I        + N   +   M    + P     + L+  CS A +L+ A  L+++  + 
Sbjct: 739 SLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLR 798

Query: 391 RCTNPKPFSAFLAACDTMDKPERAIKIF-AKMRQKLRPDIRTYELLFSLFGNVNAPYEEG 449
              +   F+  +       K +  +K+    M + L P+  T E + S         E  
Sbjct: 799 GHASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVH 858

Query: 450 NMFSQV------DSAKRINAIEMDMAR---------NNIQHSHISMKNLLKALGAEGMIR 494
            +F ++       +A+  +++ MDM           +++   H    NL KAL    M+R
Sbjct: 859 TIFVELQQKTSESAARHFSSLFMDMINQGKIPLDVVDDMIRDHCKEGNLDKAL----MLR 914

Query: 495 ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPN 543
           ++I        P+G  +Y  ++ +L    +   A+ + K+M   GI P+
Sbjct: 915 DVI---VAKSAPMGCSSYLAIVDNLCRKGKLSEALNLLKEMDKRGICPS 960


>gi|449443698|ref|XP_004139614.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Cucumis sativus]
          Length = 732

 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 113/531 (21%), Positives = 219/531 (41%), Gaps = 49/531 (9%)

Query: 123 KCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLD 182
           K Y L+++ L  G   + A+N+ Y +  + G+ P +  +   + A    + +  A   L 
Sbjct: 184 KSYDLVLEILVTGNCPQVATNVFYDMLSK-GVSPTVFTFGIVMKALCMFNEVDSACSLLR 242

Query: 183 LMDSRMVGKNEVTYTELLKLAVWQKNL--SAVHEIWEDYIKHYSLSIFSLRKFVWSFTRL 240
            M       N + Y  L+  A+ QKN    A+  + E ++      + +    +    ++
Sbjct: 243 DMTKHGCVPNSIVYQTLIH-ALSQKNQVSEALKLLEEMFVMGCMPDVQTFNDVIHGLCKV 301

Query: 241 RDLKSAYETLQHMVALAMM------GKLYINRTSEGRLRSSR---LDIPIPLNALPVMKV 291
             +  A + +  M+           G L       G+L  +R   + IP P NA+    +
Sbjct: 302 NKIHDATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEARKILIKIPCPNNAILNTLI 361

Query: 292 LRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVL 351
             +  S  +    +   S L E     M + G QP   TY+  +  +  +  L    +++
Sbjct: 362 NGYVMSGQL----KEAQSFLNET----MINFGFQPDIFTYNILMHGLCKEGSLSFARDLV 413

Query: 352 KIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTM 408
             M +   +P   T A L     KA  L+ A  +L ++S      N   ++  + A    
Sbjct: 414 NEMSRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICALCRK 473

Query: 409 DKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI------ 461
           +K   A+ + ++M  K  +PD+ TY  L      V+          ++D A R+      
Sbjct: 474 EKVHVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVD----------RIDEAFRLFHNMLL 523

Query: 462 -NAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLV 520
             A+  ++  N + H+ +      KAL    ++ +++   C     L   TYN ++ +  
Sbjct: 524 DGAVANNVTYNTLIHALLRRGAFQKALT---LVNDMLFRGC----TLDKITYNGLIKAFC 576

Query: 521 EAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTM 580
           +     + +E+++QM   G+  +  + NIMI+    +    +A   +   +  GF P  +
Sbjct: 577 KVGNIEKGLELYEQMIMDGLGADTISCNIMINGLCKVGKVDNAFEFLRDAINRGFVPDIV 636

Query: 581 TYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
           TY +++  L   G   EALNL D + +EG+  D   YNT +   C++G ++
Sbjct: 637 TYNSVLNGLCKVGRIKEALNLFDRLQVEGVRPDAFTYNTFISWQCKEGMVN 687



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 86/384 (22%), Positives = 164/384 (42%), Gaps = 21/384 (5%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           +  +IHA  +      A +L+ +M  +G  P   T++  I  +     + +  +++  M 
Sbjct: 256 YQTLIHALSQKNQVSEALKLLEEMFVMGCMPDVQTFNDVIHGLCKVNKIHDATKLVDRML 315

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAI 415
                P + T   L     +  +L+ A  +L +I  C N    +  +       + + A 
Sbjct: 316 LRGFYPDNMTYGFLLHGLCRIGKLNEARKILIKIP-CPNNAILNTLINGYVMSGQLKEAQ 374

Query: 416 KIFAK--MRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNI 473
               +  +    +PDI TY +L      ++   +EG++    D          +M+R   
Sbjct: 375 SFLNETMINFGFQPDIFTYNIL------MHGLCKEGSLSFARDLVN-------EMSRRGC 421

Query: 474 QHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAME 530
           + + I+   L+  L   G++ E   ++         + +  YN ++ +L   ++ H A+ 
Sbjct: 422 EPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICALCRKEKVHVALN 481

Query: 531 IFKQMKTCGIPPNAATYNIMI-DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
           +  +M T G  P+  TYN +I   C + R    A  L   M+ DG     +TY  LI  L
Sbjct: 482 LLSEMCTKGCKPDLFTYNSLIYGLCKVDR-IDEAFRLFHNMLLDGAVANNVTYNTLIHAL 540

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649
           L  G F +AL L++ +   G   D + YN ++K  C+ G I+    + EQM  + +  D 
Sbjct: 541 LRRGAFQKALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADT 600

Query: 650 STCHFVFSGYVNCGFHNSAMEALQ 673
            +C+ + +G    G  ++A E L+
Sbjct: 601 ISCNIMINGLCKVGKVDNAFEFLR 624



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 65/312 (20%), Positives = 122/312 (39%), Gaps = 58/312 (18%)

Query: 410 KPERAIKIFAKMRQKL--RPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMD 467
           +P +AI++   MR      P  ++Y+L+  +    N P    N+F              D
Sbjct: 162 QPGQAIRLLLDMRAVYLCEPTFKSYDLVLEILVTGNCPQVATNVF-------------YD 208

Query: 468 MARNNIQHSHISMKNLLKAL-------GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLV 520
           M    +  +  +   ++KAL        A  ++R++ ++ C    P  +  Y T++H+L 
Sbjct: 209 MLSKGVSPTVFTFGIVMKALCMFNEVDSACSLLRDMTKHGC---VP-NSIVYQTLIHALS 264

Query: 521 EAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTM 580
           +  +   A+++ ++M   G  P+  T+N +I     +     A+ LV  M+  GFYP  M
Sbjct: 265 QKNQVSEALKLLEEMFVMGCMPDVQTFNDVIHGLCKVNKIHDATKLVDRMLLRGFYPDNM 324

Query: 581 TYTALIKILLDYGDFDEALNLLDLVSLE-------------------------------- 608
           TY  L+  L   G  +EA  +L  +                                   
Sbjct: 325 TYGFLLHGLCRIGKLNEARKILIKIPCPNNAILNTLINGYVMSGQLKEAQSFLNETMINF 384

Query: 609 GIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSA 668
           G   D+  YN ++   C++G +     ++ +M +   +P+  T   + +G    G    A
Sbjct: 385 GFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEPNVITYAILVNGLCKAGLLEEA 444

Query: 669 MEALQVLSMRML 680
              L  +S R L
Sbjct: 445 GLVLHEMSARGL 456



 Score = 43.5 bits (101), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 34/178 (19%), Positives = 79/178 (44%), Gaps = 1/178 (0%)

Query: 482 NLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGI- 540
           N L A+G   +I +L+    +         +  ++    +A +  +A+ +   M+   + 
Sbjct: 120 NKLGAIGKFKLIDKLLMQMKEEGIVFRESIFMIIMKHYGKAGQPGQAIRLLLDMRAVYLC 179

Query: 541 PPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALN 600
            P   +Y+++++      C + A+ +   M+  G  P   T+  ++K L  + + D A +
Sbjct: 180 EPTFKSYDLVLEILVTGNCPQVATNVFYDMLSKGVSPTVFTFGIVMKALCMFNEVDSACS 239

Query: 601 LLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
           LL  ++  G   + ++Y T++    +K ++     ++E+M      PD  T + V  G
Sbjct: 240 LLRDMTKHGCVPNSIVYQTLIHALSQKNQVSEALKLLEEMFVMGCMPDVQTFNDVIHG 297


>gi|15233259|ref|NP_188222.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274469|sp|Q9LW84.1|PP236_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g16010
 gi|9294448|dbj|BAB02667.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642241|gb|AEE75762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 642

 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 91/424 (21%), Positives = 167/424 (39%), Gaps = 57/424 (13%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM- 354
            S+++ A GR +    A  +  Q +    +P+S TY+  I  ++ +       EV   M 
Sbjct: 165 LSELVKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMC 224

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQIS-RCTNP--KPFSAFLAACDTMDKP 411
            + +  P   T + L     K    D A  L D++   C  P  K ++  L     + K 
Sbjct: 225 NEGDCFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKV 284

Query: 412 ERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           E+A+ +F +M R    P + TY  L    G             +VD A        DM R
Sbjct: 285 EKALDLFEEMKRAGCSPTVYTYTELIKGLGKA----------GRVDEAY---GFYKDMLR 331

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPT---YNTVLHSLVEAQ---- 523
           + +    + + NL+  LG  G + EL   F +      TPT   YNTV+ +L E++    
Sbjct: 332 DGLTPDVVFLNNLMNILGKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVS 391

Query: 524 --------------------------------ESHRAMEIFKQMKTCGIPPNAATYNIMI 551
                                              +A+ + ++M   G PP  A Y  +I
Sbjct: 392 EVSSWFDKMKADSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLI 451

Query: 552 DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIP 611
           +     + +++A+ L   +  +     +  Y  +IK     G   EA++L + +  +G  
Sbjct: 452 NALGKAKRYEAANELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSG 511

Query: 612 HDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEA 671
            DV  YN ++    + G I+    ++ +M +N  + D ++ + + +G+   G    A+E 
Sbjct: 512 PDVYAYNALMSGMVKAGMINEANSLLRKMEENGCRADINSHNIILNGFARTGVPRRAIEM 571

Query: 672 LQVL 675
            + +
Sbjct: 572 FETI 575



 Score = 60.1 bits (144), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 84/187 (44%), Gaps = 5/187 (2%)

Query: 467 DMARNN-IQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEA 522
           ++ RN  +  S   +  L+KALG   M+ + +  F  +K     P   TYN+V+  L++ 
Sbjct: 151 EVVRNTYVSVSPAVLSELVKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQE 210

Query: 523 QESHRAMEIFKQMKTCG-IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMT 581
            +  +  E++ +M   G   P+  TY+ +I     +    SA  L   M  +   P    
Sbjct: 211 GQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKI 270

Query: 582 YTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMH 641
           YT L+ I    G  ++AL+L + +   G    V  Y  ++K   + GR+D      + M 
Sbjct: 271 YTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDML 330

Query: 642 QNKVQPD 648
           ++ + PD
Sbjct: 331 RDGLTPD 337



 Score = 60.1 bits (144), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 58/288 (20%), Positives = 128/288 (44%), Gaps = 24/288 (8%)

Query: 310 GLAEQLMLQMQSLGL---QPSSHTYDGFIRAIVSDRG-LRNGMEVLKIMQQNNLKPQDST 365
           G  E+L      +G+    P+  +Y+  I+A+   +  +         M+ +++ P + T
Sbjct: 352 GRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKADSVSPSEFT 411

Query: 366 IATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPER---AIKIFAKMR 422
            + L     K   ++ A  LL+++     P   +A+ +  + + K +R   A ++F +++
Sbjct: 412 YSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKELK 471

Query: 423 QKL-RPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMK 481
           +       R Y ++   FG      E  ++F         N ++   +  ++   +  M 
Sbjct: 472 ENFGNVSSRVYAVMIKHFGKCGKLSEAVDLF---------NEMKNQGSGPDVYAYNALMS 522

Query: 482 NLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTC 538
            ++KA    GMI E   L++   ++       ++N +L+         RA+E+F+ +K  
Sbjct: 523 GMVKA----GMINEANSLLRKMEENGCRADINSHNIILNGFARTGVPRRAIEMFETIKHS 578

Query: 539 GIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
           GI P+  TYN ++ C +    F+ A+ ++  M   GF    +TY++++
Sbjct: 579 GIKPDGVTYNTLLGCFAHAGMFEEAARMMREMKDKGFEYDAITYSSIL 626



 Score = 47.4 bits (111), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 56/243 (23%), Positives = 98/243 (40%), Gaps = 22/243 (9%)

Query: 318 QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKAL 377
           +M++  + PS  TY   I        +   + +L+ M +    P  +   +L     KA 
Sbjct: 399 KMKADSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAK 458

Query: 378 ELDLAEALLDQISRC---TNPKPFSAFLAACDTMDKPERAIKIFAKMR-QKLRPDIRTYE 433
             + A  L  ++       + + ++  +       K   A+ +F +M+ Q   PD+  Y 
Sbjct: 459 RYEAANELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYN 518

Query: 434 LLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMI 493
            L S  G V A      M ++ +S  R   +E +  R +I   +I    +L      G+ 
Sbjct: 519 ALMS--GMVKA-----GMINEANSLLR--KMEENGCRADINSHNI----ILNGFARTGVP 565

Query: 494 RELIQYFCDSK----TPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNI 549
           R  I+ F   K     P G  TYNT+L     A     A  + ++MK  G   +A TY+ 
Sbjct: 566 RRAIEMFETIKHSGIKPDGV-TYNTLLGCFAHAGMFEEAARMMREMKDKGFEYDAITYSS 624

Query: 550 MID 552
           ++D
Sbjct: 625 ILD 627


>gi|357438845|ref|XP_003589699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478747|gb|AES59950.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 806

 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 88/387 (22%), Positives = 169/387 (43%), Gaps = 43/387 (11%)

Query: 318 QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNN-LKPQDSTIATLSVECSKA 376
           +  SL + P S ++   ++ +  +  + + +E  K +  +   K    T  T+  +  + 
Sbjct: 30  KANSLNVCPVSESH--VVKVLRQEHDIVSSLEYFKSLSNSGTFKHTHLTYETMIDKLGRN 87

Query: 377 LELDLAEALLDQISRCTNP--KPFSAFLAAC-DTMDKPERAIKIFAKMRQ-KLRPDIRTY 432
            E+D    LL Q+     P  +    F+  C    +  E+ +K+F ++R+    P ++ Y
Sbjct: 88  NEMDGVSYLLQQMKLENVPCSQELFQFVIKCYRRSNLGEQGLKMFYRIREFGCEPSVKIY 147

Query: 433 ELLF------SLFGNVNAPYE-------EGNMFS------------QVDSAKRINAIEMD 467
            L+       +LF  +NA Y        E N+F+            +VD A ++    ++
Sbjct: 148 NLVLDALLSQNLFKMINALYNNMKSEGLEPNVFTYNVLLKALCQNGKVDGACKL---LVE 204

Query: 468 MARNNIQHSHISMKNLLKA---LGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQE 524
           M+        +S   ++ +   LG     REL   F     P+  P YN ++H + +   
Sbjct: 205 MSNKGCDPDDVSYTTVISSMCKLGDVDKARELAMKF----EPV-VPVYNALIHGVCKECR 259

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
              A ++  +M   G+ PN  +Y+ +I C S +   + + A+   M   G  P   T+T+
Sbjct: 260 FKEAFDLMNEMVDRGVDPNVISYSTVISCLSDMGNVELSLAVFGRMFVRGCRPNVQTFTS 319

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
           LIK     G   +A+ L +L+  EG+  +V+ YNT++   C  G +D    +  QM ++ 
Sbjct: 320 LIKGFFVRGRVGDAVGLWNLMIREGVSPNVVAYNTLIHGLCSDGNMDEAISVWNQMEKDS 379

Query: 645 VQPDPSTCHFVFSGYVNCGFHNSAMEA 671
           ++P+ +T   +  G+   G   SA E 
Sbjct: 380 IRPNVTTYSTIIYGFAKSGDLVSACET 406



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 86/394 (21%), Positives = 166/394 (42%), Gaps = 55/394 (13%)

Query: 318 QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKAL 377
            M+S GL+P+  TY+  ++A+  +  +    ++L  M      P D +  T+     K  
Sbjct: 169 NMKSEGLEPNVFTYNVLLKALCQNGKVDGACKLLVEMSNKGCDPDDVSYTTVISSMCKLG 228

Query: 378 ELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLF 436
           ++D A  L  +         ++A +       + + A  +  +M  + + P++ +Y  + 
Sbjct: 229 DVDKARELAMKFEPVV--PVYNALIHGVCKECRFKEAFDLMNEMVDRGVDPNVISYSTVI 286

Query: 437 SLF---GNVNAPYEE-GNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGM 492
           S     GNV       G MF +               R N+Q    +  +L+K     G 
Sbjct: 287 SCLSDMGNVELSLAVFGRMFVR-------------GCRPNVQ----TFTSLIKGFFVRGR 329

Query: 493 IRELIQYFC----DSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYN 548
           + + +  +     +  +P     YNT++H L        A+ ++ QM+   I PN  TY+
Sbjct: 330 VGDAVGLWNLMIREGVSP-NVVAYNTLIHGLCSDGNMDEAISVWNQMEKDSIRPNVTTYS 388

Query: 549 IMIDCCSIIRCFKSASALVSM------MVRDGFYPQTMTYTALIKILLDYGDFDEALNLL 602
                 +II  F  +  LVS       M+  G  P  + YT ++ +L     FD+A +L+
Sbjct: 389 ------TIIYGFAKSGDLVSACETWNKMINCGCRPNVVVYTCMVDVLCQMSMFDQAFDLI 442

Query: 603 DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNC 662
           D +  +G P  V+ +N  +K  C  GR++    +++QM + +  P+  T           
Sbjct: 443 DNMISDGCPPTVITFNNFIKGLCRAGRVEWAMNVLDQMEKYECLPNIRT----------- 491

Query: 663 GFHNSAMEAL-QVLSMRMLCEEVSTLEEKRSDFE 695
             +N  ++ L +  + R  C  +  LEE++ +F+
Sbjct: 492 --YNELLDGLFRANAFREACGLIRELEERKVEFD 523



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 73/363 (20%), Positives = 138/363 (38%), Gaps = 20/363 (5%)

Query: 287 PVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRN 346
           PV+ V    ++ +IH   +      A  LM +M   G+ P+  +Y   I  +     +  
Sbjct: 242 PVVPV----YNALIHGVCKECRFKEAFDLMNEMVDRGVDPNVISYSTVISCLSDMGNVEL 297

Query: 347 GMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLA 403
            + V   M     +P   T  +L         +  A  L + + R     N   ++  + 
Sbjct: 298 SLAVFGRMFVRGCRPNVQTFTSLIKGFFVRGRVGDAVGLWNLMIREGVSPNVVAYNTLIH 357

Query: 404 ACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDS-AKRI 461
              +    + AI ++ +M +  +RP++ TY  +   F       + G++ S  ++  K I
Sbjct: 358 GLCSDGNMDEAISVWNQMEKDSIRPNVTTYSTIIYGFA------KSGDLVSACETWNKMI 411

Query: 462 NAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVE 521
           N       R N+   +  M ++L  +       +LI        P    T+N  +  L  
Sbjct: 412 NC----GCRPNVV-VYTCMVDVLCQMSMFDQAFDLIDNMISDGCPPTVITFNNFIKGLCR 466

Query: 522 AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMT 581
           A     AM +  QM+     PN  TYN ++D       F+ A  L+  +         +T
Sbjct: 467 AGRVEWAMNVLDQMEKYECLPNIRTYNELLDGLFRANAFREACGLIRELEERKVEFDCVT 526

Query: 582 YTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMH 641
           Y  ++      G   + L LL  + + GI  D +  NT +   C+ G++     +++ + 
Sbjct: 527 YNTIMYGFSFNGMHQQVLQLLGKMLVNGIKLDTITVNTTVNAYCKLGKVKTAIKVLDNIS 586

Query: 642 QNK 644
             K
Sbjct: 587 AEK 589


>gi|147832566|emb|CAN63846.1| hypothetical protein VITISV_010038 [Vitis vinifera]
          Length = 457

 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/372 (21%), Positives = 152/372 (40%), Gaps = 61/372 (16%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQ----DSTIA 367
           AE +++    LGL P   TY+  + A     G+     V+  M++  + P     +S IA
Sbjct: 26  AEAVVIDGIRLGLLPDVVTYNTLLSAYSRFVGIDAAYSVIHRMKEAGISPDVITYNSLIA 85

Query: 368 TLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRP 427
             +  C  +  LDL E +L                                   R  +RP
Sbjct: 86  AATKRCLLSRSLDLFEEML-----------------------------------RTGIRP 110

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQV------DSAKRINAIEMDMARNNIQHSHISMK 481
           D+ +Y  L   F  +  P E   +F  +       S+   N +   +  N      +S  
Sbjct: 111 DVWSYNSLMHCFFKLGKPDEANRVFQDIILTNLLPSSSTFNIMINGLCNNGYTGYALS-- 168

Query: 482 NLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIP 541
            L + L  +G + EL+             TYN +++ L ++++ + A  I +++   G  
Sbjct: 169 -LYRYLQRQGFVPELV-------------TYNILINGLCKSRKLNAARRILRELGESGNV 214

Query: 542 PNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNL 601
           P+A TY  ++ CC   R F+    + S M   G+     +Y A+I  L   G  +EA ++
Sbjct: 215 PDAITYTTVMKCCFRSRQFEQGFEIFSEMKSKGYAFDAFSYCAVIAALTKTGRLEEANDI 274

Query: 602 LDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVN 661
           ++ ++   I  D++ YNT++   C  G+++    +++++ ++ ++ D  T   +  G   
Sbjct: 275 MEQMARSDIDLDIVSYNTVMNLYCRNGKLEATYKLLDEIEEHGLECDEYTHTILIDGLCK 334

Query: 662 CGFHNSAMEALQ 673
            G    A+  L+
Sbjct: 335 AGNVEGALRHLK 346



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 104/463 (22%), Positives = 193/463 (41%), Gaps = 71/463 (15%)

Query: 127 LMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDS 186
           + + +LCK G LE+A  ++   G R G+ P +  YN+ L A ++   +  A   +  M  
Sbjct: 12  ICIASLCKVGQLEKAEAVV-IDGIRLGLLPDVVTYNTLLSAYSRFVGIDAAYSVIHRMKE 70

Query: 187 RMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSA 246
             +  + +TY  L+  A  +  LS   +++E+ ++        +R  VWS          
Sbjct: 71  AGISPDVITYNSLIAAATKRCLLSRSLDLFEEMLRT------GIRPDVWS---------- 114

Query: 247 YETLQHMVALAMMGKL-YINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGR 305
           Y +L H      +GK    NR  +        DI I  N LP       +F+ +I+    
Sbjct: 115 YNSLMH--CFFKLGKPDEANRVFQ--------DI-ILTNLLPSSS----TFNIMINGLCN 159

Query: 306 TQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDST 365
              +G A  L   +Q  G  P   TY+  I  +   R L     +L+ + ++   P   T
Sbjct: 160 NGYTGYALSLYRYLQRQGFVPELVTYNILINGLCKSRKLNAARRILRELGESGNVPDAIT 219

Query: 366 IATLSVECSKALELDLAEALLDQISRCTNPKPFSAF-----LAACDTMDKPERAIKIFAK 420
             T+   C ++ + +    +  ++   +    F AF     +AA     + E A  I  +
Sbjct: 220 YTTVMKCCFRSRQFEQGFEIFSEMK--SKGYAFDAFSYCAVIAALTKTGRLEEANDIMEQ 277

Query: 421 M-RQKLRPDIRTYELLFSLF---GNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHS 476
           M R  +  DI +Y  + +L+   G + A Y+   +  +++     + +E D      +++
Sbjct: 278 MARSDIDLDIVSYNTVMNLYCRNGKLEATYK---LLDEIEE----HGLECD------EYT 324

Query: 477 H-ISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTY----NTVLHSLVEAQESHRAMEI 531
           H I +  L KA   EG +R L      + T +G  +     N V+  L +  +   A+++
Sbjct: 325 HTILIDGLCKAGNVEGALRHL-----KNMTKMGFDSTLVAQNCVIDGLCKVGQLDHAIKM 379

Query: 532 FKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDG 574
           F  M+      ++ TY+ M+      R ++ AS L+   +R G
Sbjct: 380 FASMEV----KDSFTYSSMVHNLCKARRYRHASRLLLACLRGG 418



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/178 (21%), Positives = 75/178 (42%)

Query: 509 TPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVS 568
           T   N  + SL +  +  +A  +       G+ P+  TYN ++   S      +A +++ 
Sbjct: 7   TKLLNICIASLCKVGQLEKAEAVVIDGIRLGLLPDVVTYNTLLSAYSRFVGIDAAYSVIH 66

Query: 569 MMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
            M   G  P  +TY +LI           +L+L + +   GI  DV  YN+++    + G
Sbjct: 67  RMKEAGISPDVITYNSLIAAATKRCLLSRSLDLFEEMLRTGIRPDVWSYNSLMHCFFKLG 126

Query: 629 RIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           + D    + + +    + P  ST + + +G  N G+   A+   + L  +    E+ T
Sbjct: 127 KPDEANRVFQDIILTNLLPSSSTFNIMINGLCNNGYTGYALSLYRYLQRQGFVPELVT 184



 Score = 50.1 bits (118), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 67/167 (40%), Gaps = 2/167 (1%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASA-LVSM 569
           TYNT+L +         A  +  +MK  GI P+  TYN +I   +  RC  S S  L   
Sbjct: 44  TYNTLLSAYSRFVGIDAAYSVIHRMKEAGISPDVITYNSLI-AAATKRCLLSRSLDLFEE 102

Query: 570 MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
           M+R G  P   +Y +L+      G  DEA  +   + L  +      +N ++   C  G 
Sbjct: 103 MLRTGIRPDVWSYNSLMHCFFKLGKPDEANRVFQDIILTNLLPSSSTFNIMINGLCNNGY 162

Query: 630 IDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
                 +   + +    P+  T + + +G       N+A   L+ L 
Sbjct: 163 TGYALSLYRYLQRQGFVPELVTYNILINGLCKSRKLNAARRILRELG 209



 Score = 43.5 bits (101), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 56/297 (18%), Positives = 115/297 (38%), Gaps = 21/297 (7%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           WS++ ++H   +      A ++   +    L PSS T++  I  + ++      + + + 
Sbjct: 113 WSYNSLMHCFFKLGKPDEANRVFQDIILTNLLPSSSTFNIMINGLCNNGYTGYALSLYRY 172

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTN---PKPFSAFLAACDTMDK 410
           +Q+    P+  T   L     K+ +L+ A  +L ++    N      ++  +  C    +
Sbjct: 173 LQRQGFVPELVTYNILINGLCKSRKLNAARRILRELGESGNVPDAITYTTVMKCCFRSRQ 232

Query: 411 PERAIKIFAKMRQKLRPDIRTYEL-LFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
            E+  +IF++M+ K       Y    FS    + A  + G +       +  N I   MA
Sbjct: 233 FEQGFEIFSEMKSK------GYAFDAFSYCAVIAALTKTGRL-------EEANDIMEQMA 279

Query: 470 RNNIQHSHISMKNLLKALGAEGMIR---ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESH 526
           R++I    +S   ++      G +    +L+    +        T+  ++  L +A    
Sbjct: 280 RSDIDLDIVSYNTVMNLYCRNGKLEATYKLLDEIEEHGLECDEYTHTILIDGLCKAGNVE 339

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMID-CCSIIRCFKSASALVSMMVRDGFYPQTMTY 582
            A+   K M   G        N +ID  C + +   +     SM V+D F   +M +
Sbjct: 340 GALRHLKNMTKMGFDSTLVAQNCVIDGLCKVGQLDHAIKMFASMEVKDSFTYSSMVH 396


>gi|15236546|ref|NP_194913.1| proton gradient regulation 3 [Arabidopsis thaliana]
 gi|75213543|sp|Q9SZ52.1|PP344_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g31850, chloroplastic; AltName: Full=Protein PROTON
           GRADIENT REGULATION 3; Flags: Precursor
 gi|4584524|emb|CAB40755.1| putative protein [Arabidopsis thaliana]
 gi|7270088|emb|CAB79903.1| putative protein [Arabidopsis thaliana]
 gi|332660567|gb|AEE85967.1| proton gradient regulation 3 [Arabidopsis thaliana]
          Length = 1112

 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 115/501 (22%), Positives = 194/501 (38%), Gaps = 30/501 (5%)

Query: 169 AKLHSMVHANLCLDLMDSRMVGKNEVTYTELLK-LAVWQKNLSAVHEIWEDYIKHYSLSI 227
            KL  M +     DLM  R++ ++  TY  + K L+V      A + + +     + L+ 
Sbjct: 132 GKLEEMAYV---FDLMQKRIIKRDTNTYLTIFKSLSVKGGLKQAPYALRKMREFGFVLNA 188

Query: 228 FSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALP 287
           +S    +    + R    A E  + M+       L    +    L   R DI   +  L 
Sbjct: 189 YSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGL-GKRRDIDSVMGLLK 247

Query: 288 VMKVLR-----WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDR 342
            M+ L      ++F+  I   GR      A +++ +M   G  P   TY   I A+ + R
Sbjct: 248 EMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTAR 307

Query: 343 GLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFL 402
            L    EV + M+    KP   T  TL    S   +LD  +    ++ +  +      F 
Sbjct: 308 KLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFT 367

Query: 403 AACDTMDKPE---RAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSA 458
              D + K      A      MR Q + P++ TY  L      V+   +   +F  ++S 
Sbjct: 368 ILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMES- 426

Query: 459 KRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTY---NTV 515
                    +      +++I     +   G  G     ++ F   KT    P     N  
Sbjct: 427 ---------LGVKPTAYTYIV---FIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNAS 474

Query: 516 LHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGF 575
           L+SL +A     A +IF  +K  G+ P++ TYN+M+ C S +     A  L+S M+ +G 
Sbjct: 475 LYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGC 534

Query: 576 YPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEF 635
            P  +   +LI  L      DEA  +   +    +   V+ YNT+L    + G+I     
Sbjct: 535 EPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIE 594

Query: 636 IIEQMHQNKVQPDPSTCHFVF 656
           + E M Q    P+  T + +F
Sbjct: 595 LFEGMVQKGCPPNTITFNTLF 615



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 139/666 (20%), Positives = 270/666 (40%), Gaps = 65/666 (9%)

Query: 54  ATQMQIVDALCRGER-SRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRM 112
            T   ++DALC   +   A  +   +    H      +  +L+  + + D   V + W  
Sbjct: 294 VTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSE 353

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
           ME+     +   + +++ ALCK G   EA + +  + ++ GI P L  YN+ +    ++H
Sbjct: 354 MEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQ-GILPNLHTYNTLICGLLRVH 412

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQK---NLSAVHEIWEDYIKHYSLSIFS 229
            +  A      M+S  +G     YT ++ +  + K   ++SA+    +   K  + +I +
Sbjct: 413 RLDDALELFGNMES--LGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVA 470

Query: 230 LRKFVWSFT---RLRDLKSAYETLQHM------VALAMMGKLY--INRTSEG-RLRSSRL 277
               ++S     R R+ K  +  L+ +      V   MM K Y  +    E  +L S  +
Sbjct: 471 CNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMM 530

Query: 278 DIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRA 337
           +     N      ++  S  + ++   R      A ++ ++M+ + L+P+  TY+  +  
Sbjct: 531 E-----NGCEPDVIVVNSLINTLYKADRVDE---AWKMFMRMKEMKLKPTVVTYNTLLAG 582

Query: 338 IVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLA-EALLDQISRCTNPK 396
           +  +  ++  +E+ + M Q    P   T  TL     K  E+ LA + L   +     P 
Sbjct: 583 LGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPD 642

Query: 397 PFS--AFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGN---- 450
            F+    +       + + A+  F +M++ + PD  T  L   L G V A   E      
Sbjct: 643 VFTYNTIIFGLVKNGQVKEAMCFFHQMKKLVYPDFVT--LCTLLPGVVKASLIEDAYKII 700

Query: 451 ---MFSQVDSAKRI---NAIEMDMARNNIQHSHISMKNLLKALG----AEGMIRELIQYF 500
              +++  D    +   + I   +A   I ++ +S    L A G     + ++  +I+Y 
Sbjct: 701 TNFLYNCADQPANLFWEDLIGSILAEAGIDNA-VSFSERLVANGICRDGDSILVPIIRYS 759

Query: 501 CDSKTPLGT-----------------PTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPN 543
           C      G                  PTYN ++  L+EA     A ++F Q+K+ G  P+
Sbjct: 760 CKHNNVSGARTLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPD 819

Query: 544 AATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNL-L 602
            ATYN ++D             L   M        T+T+  +I  L+  G+ D+AL+L  
Sbjct: 820 VATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYY 879

Query: 603 DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNC 662
           DL+S          Y  ++    + GR+   + + E M     +P+ +  + + +G+   
Sbjct: 880 DLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKA 939

Query: 663 GFHNSA 668
           G  ++A
Sbjct: 940 GEADAA 945



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 94/420 (22%), Positives = 176/420 (41%), Gaps = 51/420 (12%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           +S++ +IH   +++    A ++  +M   G +PS  TY   +  +   R + + M +LK 
Sbjct: 189 YSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKE 248

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQIS-RCTNPK--PFSAFLAACDTMDK 410
           M+   LKP   T         +A +++ A  +L ++      P    ++  + A  T  K
Sbjct: 249 METLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARK 308

Query: 411 PERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI-NAIEMDM 468
            + A ++F KM+  + +PD  TY  L   F +             +DS K+  + +E D 
Sbjct: 309 LDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNR----------DLDSVKQFWSEMEKDG 358

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRA 528
              ++    I +  L KA G  G   + +    D        TYNT++  L+       A
Sbjct: 359 HVPDVVTFTILVDALCKA-GNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDA 417

Query: 529 MEIFKQMKTCGIPPNAATYNIMID-----------------------CCSIIRCFKSASA 565
           +E+F  M++ G+ P A TY + ID                         +I+ C  S  +
Sbjct: 418 LELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYS 477

Query: 566 L-----------VSMMVRD-GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHD 613
           L           +   ++D G  P ++TY  ++K     G+ DEA+ LL  +   G   D
Sbjct: 478 LAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPD 537

Query: 614 VLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           V++ N+++    +  R+D    +  +M + K++P   T + + +G    G    A+E  +
Sbjct: 538 VIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFE 597



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 65/275 (23%), Positives = 119/275 (43%), Gaps = 17/275 (6%)

Query: 414 AIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNN 472
           A++++ +M  +  RP ++TY  L    G              +DS   +  +  +M    
Sbjct: 207 AMEVYRRMILEGFRPSLQTYSSLMVGLGKRR----------DIDS---VMGLLKEMETLG 253

Query: 473 IQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAM 529
           ++ +  +    ++ LG  G I E   +++   D        TY  ++ +L  A++   A 
Sbjct: 254 LKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAK 313

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
           E+F++MKT    P+  TY  ++D  S  R   S     S M +DG  P  +T+T L+  L
Sbjct: 314 EVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDAL 373

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649
              G+F EA + LD++  +GI  ++  YNT++       R+D    +   M    V+P  
Sbjct: 374 CKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTA 433

Query: 650 STCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEV 684
            T       Y   G   SA+E  + +  + +   +
Sbjct: 434 YTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNI 468



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 80/372 (21%), Positives = 146/372 (39%), Gaps = 29/372 (7%)

Query: 318 QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKAL 377
           +M+  G   ++++Y+G I  ++  R     MEV + M     +P   T ++L V   K  
Sbjct: 178 KMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRR 237

Query: 378 ELDLAEALLDQISRCT---NPKPFSAFLAACDTMDKPERAIKIFAKMR-QKLRPDIRTYE 433
           ++D    LL ++       N   F+  +       K   A +I  +M  +   PD+ TY 
Sbjct: 238 DIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYT 297

Query: 434 LLFSLFGNVNAPYEEGNMFSQVDSAK----RINAIEMDMARNNIQHSHISMKNLLKALGA 489
           +L               +F ++ + +    R+  I + + R +      S+K     +  
Sbjct: 298 VLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITL-LDRFSDNRDLDSVKQFWSEMEK 356

Query: 490 EGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNI 549
           +G + +++             T+  ++ +L +A     A +    M+  GI PN  TYN 
Sbjct: 357 DGHVPDVV-------------TFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNT 403

Query: 550 MIDCCSIIRCFK--SASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSL 607
           +I  C ++R  +   A  L   M   G  P   TY   I      GD   AL   + +  
Sbjct: 404 LI--CGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKT 461

Query: 608 EGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNS 667
           +GI  +++  N  L    + GR    + I   +    + PD  T + +   Y   G    
Sbjct: 462 KGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVG---E 518

Query: 668 AMEALQVLSMRM 679
             EA+++LS  M
Sbjct: 519 IDEAIKLLSEMM 530



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 122/583 (20%), Positives = 235/583 (40%), Gaps = 60/583 (10%)

Query: 106 VMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFL 165
           VM   + ME   +  N   + + ++ L + G + EA  ++  + +  G  P +  Y   +
Sbjct: 242 VMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDE-GCGPDVVTYTVLI 300

Query: 166 GACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSL 225
            A      +  A    + M +     + VTY  LL      ++L +V + W +  K   +
Sbjct: 301 DALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHV 360

Query: 226 -SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYI-NRTSEGRLRSSRLDIPIPL 283
             + +    V +  +  +   A++TL  M    ++  L+  N    G LR  RLD  + L
Sbjct: 361 PDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALEL 420

Query: 284 ----NALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIV 339
                +L V K   +++   I   G++ +S  A +   +M++ G+ P+    +  + ++ 
Sbjct: 421 FGNMESLGV-KPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLA 479

Query: 340 SDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVEC-SKALELDLAEALLDQISRCTNPKPF 398
                R   ++   ++   L P DS    + ++C SK  E+D A  LL ++         
Sbjct: 480 KAGRDREAKQIFYGLKDIGLVP-DSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDV 538

Query: 399 SAFLAACDTMDKPER---AIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMF-S 453
               +  +T+ K +R   A K+F +M++ KL+P + TY  L +  G      E   +F  
Sbjct: 539 IVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEG 598

Query: 454 QVDSAKRINAIEMD-----MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLG 508
            V      N I  +     + +N+     +++K L K +   G + ++            
Sbjct: 599 MVQKGCPPNTITFNTLFDCLCKND--EVTLALKMLFKMMDM-GCVPDVF----------- 644

Query: 509 TPTYNTVLHSLVEAQESHRAMEIFKQMKT---------CGIPPNAATYNIMIDCCSIIRC 559
             TYNT++  LV+  +   AM  F QMK          C + P     +++ D   II  
Sbjct: 645 --TYNTIIFGLVKNGQVKEAMCFFHQMKKLVYPDFVTLCTLLPGVVKASLIEDAYKIITN 702

Query: 560 FKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHD---VLL 616
           F    A           P  + +  LI  +L     D A++  + +   GI  D   +L+
Sbjct: 703 FLYNCA---------DQPANLFWEDLIGSILAEAGIDNAVSFSERLVANGICRDGDSILV 753

Query: 617 YNTILKKACEKGRIDVIEFIIEQMHQN-KVQPDPSTCHFVFSG 658
              I++ +C+   +     + E+  ++  VQP   T + +  G
Sbjct: 754 --PIIRYSCKHNNVSGARTLFEKFTKDLGVQPKLPTYNLLIGG 794



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 73/398 (18%), Positives = 156/398 (39%), Gaps = 33/398 (8%)

Query: 325  QPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNL-KPQDSTIATLSVECSKALELDLAE 383
            QP++  ++  I +I+++ G+ N +   + +  N + +  DS +  +     K   +  A 
Sbjct: 710  QPANLFWEDLIGSILAEAGIDNAVSFSERLVANGICRDGDSILVPIIRYSCKHNNVSGAR 769

Query: 384  ALLDQISRCTNPKP----FSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSL 438
             L ++ ++    +P    ++  +      D  E A  +F +++     PD+ TY  L   
Sbjct: 770  TLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDA 829

Query: 439  FGNVNAPYEEGNMFSQVDS--------------AKRINAIEMD---------MARNNIQH 475
            +G      E   ++ ++ +              +  + A  +D         M+  +   
Sbjct: 830  YGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSP 889

Query: 476  SHISMKNLLKALGAEGMIRELIQYF---CDSKTPLGTPTYNTVLHSLVEAQESHRAMEIF 532
            +  +   L+  L   G + E  Q F    D         YN +++   +A E+  A  +F
Sbjct: 890  TACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALF 949

Query: 533  KQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDY 592
            K+M   G+ P+  TY++++DC  ++            +   G  P  + Y  +I  L   
Sbjct: 950  KRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKS 1009

Query: 593  GDFDEALNLL-DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
               +EAL L  ++ +  GI  D+  YN+++      G ++    I  ++ +  ++P+  T
Sbjct: 1010 HRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFT 1069

Query: 652  CHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEE 689
             + +  GY   G    A    Q +          T E+
Sbjct: 1070 FNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTYEQ 1107



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 68/301 (22%), Positives = 133/301 (44%), Gaps = 24/301 (7%)

Query: 295  SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVL-KI 353
            +++ ++ A G++       +L  +M +   + ++ T++  I  +V    + + +++   +
Sbjct: 822  TYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDL 881

Query: 354  MQQNNLKPQDSTIATLSVECSKALEL----DLAEALLDQISRCTNPKPFSAFLAACDTMD 409
            M   +  P   T   L    SK+  L     L E +LD   R  N   ++  +       
Sbjct: 882  MSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCR-PNCAIYNILINGFGKAG 940

Query: 410  KPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
            + + A  +F +M ++ +RPD++TY +L      V    E  + F ++  +     +  D+
Sbjct: 941  EADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKES----GLNPDV 996

Query: 469  ARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLG-TP---TYNTVLHSLVEAQE 524
               N+         ++  LG    + E +  F + KT  G TP   TYN+++ +L  A  
Sbjct: 997  VCYNL---------IINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGM 1047

Query: 525  SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
               A +I+ +++  G+ PN  T+N +I   S+    + A A+   MV  GF P T TY  
Sbjct: 1048 VEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTYEQ 1107

Query: 585  L 585
            L
Sbjct: 1108 L 1108


>gi|242065464|ref|XP_002454021.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
 gi|241933852|gb|EES06997.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
          Length = 729

 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 74/268 (27%), Positives = 127/268 (47%), Gaps = 19/268 (7%)

Query: 413 RAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471
           +A+ +  +MR K   PDI TY +L      +NA   EG+    VD A  I +   D+  +
Sbjct: 215 QAMVLLDEMRAKGCEPDIVTYNVL------INAMCNEGD----VDEALNILS---DLPSH 261

Query: 472 NIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRA 528
             +   ++   +LK+L      +E+ + F +  +    P   T+NT++ SL +     RA
Sbjct: 262 GCKPDAVTYTPVLKSLCGSERWKEVEELFAEMASNKCAPDEVTFNTIVTSLCQQGLVDRA 321

Query: 529 MEIFKQMKTCGIPPNAATYNIMID-CCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           +++   M   G  P+  TY+ ++D  C + R    A  L+S +   G  P T+ YT ++K
Sbjct: 322 IKVVDHMSEHGCIPDIVTYSSILDGLCDVGR-VDDAVELLSRLKSYGCKPDTIAYTTVLK 380

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
            L     ++ A  L+  +     P D + +NT++   C+KG +D    ++EQM +N   P
Sbjct: 381 GLCSIEQWEHAEELMAEMVCSDCPPDEVTFNTVIASLCQKGLVDRAIKVVEQMSENGCNP 440

Query: 648 DPSTCHFVFSGYVNCGFHNSAMEALQVL 675
           D  T + +  G  N    + AME L  L
Sbjct: 441 DIVTYNSIIDGLCNERCIDDAMELLSNL 468



 Score = 89.4 bits (220), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 110/488 (22%), Positives = 195/488 (39%), Gaps = 61/488 (12%)

Query: 230 LRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDI---PIPLNAL 286
           L K + S  R+ D +  + TL     +     +       GR+  +R  I   P P +  
Sbjct: 104 LIKRLCSGGRVADAERVFATLGASATVVTYNTMVNGYCRAGRIEDARRLISGMPFPPDTF 163

Query: 287 PVMKVLRW------------SFSDVIH-ACGRT------------QNSGLAEQLML--QM 319
               ++R              F D++H  C  +            + SG  + ++L  +M
Sbjct: 164 TFNPLIRALCVRGRVPDALAVFDDMLHRGCSPSVVTYSILLDATCKASGYRQAMVLLDEM 223

Query: 320 QSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDST-IATLSVECSKALE 378
           ++ G +P   TY+  I A+ ++  +   + +L  +  +  KP   T    L   C     
Sbjct: 224 RAKGCEPDIVTYNVLINAMCNEGDVDEALNILSDLPSHGCKPDAVTYTPVLKSLCGSERW 283

Query: 379 LDLAEALLDQISRCTNPK--PFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELL 435
            ++ E   +  S    P    F+  + +       +RAIK+   M +    PDI TY  +
Sbjct: 284 KEVEELFAEMASNKCAPDEVTFNTIVTSLCQQGLVDRAIKVVDHMSEHGCIPDIVTYSSI 343

Query: 436 FSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALG------- 488
                +V      G +   V+   R+ +          +   I+   +LK L        
Sbjct: 344 LDGLCDV------GRVDDAVELLSRLKSY-------GCKPDTIAYTTVLKGLCSIEQWEH 390

Query: 489 AEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYN 548
           AE ++ E++   C    P    T+NTV+ SL +     RA+++ +QM   G  P+  TYN
Sbjct: 391 AEELMAEMVCSDC----PPDEVTFNTVIASLCQKGLVDRAIKVVEQMSENGCNPDIVTYN 446

Query: 549 IMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLE 608
            +ID     RC   A  L+S +   G  P  +T+  L+K L     +++A  L+  +   
Sbjct: 447 SIIDGLCNERCIDDAMELLSNLQSYGCKPDIVTFNTLLKGLCSVDRWEDAEQLMVNMMHS 506

Query: 609 GIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSA 668
             P D   +NT++   C+KG +      ++ M +N   P+ ST + V    +  G     
Sbjct: 507 DCPPDATTFNTVITSLCQKGLLLQAIETLKIMAENGCIPNQSTYNIVVDALLKAG---KT 563

Query: 669 MEALQVLS 676
            EAL++LS
Sbjct: 564 QEALKLLS 571



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/280 (23%), Positives = 118/280 (42%), Gaps = 6/280 (2%)

Query: 457 SAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVL 516
           S  R+   E   A      + ++   ++      G I +  +       P  T T+N ++
Sbjct: 110 SGGRVADAERVFATLGASATVVTYNTMVNGYCRAGRIEDARRLISGMPFPPDTFTFNPLI 169

Query: 517 HSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFY 576
            +L        A+ +F  M   G  P+  TY+I++D       ++ A  L+  M   G  
Sbjct: 170 RALCVRGRVPDALAVFDDMLHRGCSPSVVTYSILLDATCKASGYRQAMVLLDEMRAKGCE 229

Query: 577 PQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFI 636
           P  +TY  LI  + + GD DEALN+L  +   G   D + Y  +LK  C   R   +E +
Sbjct: 230 PDIVTYNVLINAMCNEGDVDEALNILSDLPSHGCKPDAVTYTPVLKSLCGSERWKEVEEL 289

Query: 637 IEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDFED 696
             +M  NK  PD  T + + +     G  + A++ +  +S      ++ T         D
Sbjct: 290 FAEMASNKCAPDEVTFNTIVTSLCQQGLVDRAIKVVDHMSEHGCIPDIVTYSSILDGLCD 349

Query: 697 LILAEDS-EAESRILQF-CEDSNENLAFTAALLQLRWCTI 734
           +   +D+ E  SR+  + C+   + +A+T  L  L  C+I
Sbjct: 350 VGRVDDAVELLSRLKSYGCKP--DTIAYTTVLKGL--CSI 385



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 127/613 (20%), Positives = 236/613 (38%), Gaps = 63/613 (10%)

Query: 50  SISKATQMQIVDALCRGER-SRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVME 108
           S +  T   +V+  CR  R   A  L+  +     +   +     L    R PD L V +
Sbjct: 127 SATVVTYNTMVNGYCRAGRIEDARRLISGMPFPPDTFTFNPLIRALCVRGRVPDALAVFD 186

Query: 109 TWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGAC 168
               M  +    +   Y +++ A CK     +A  L+  +  + G  P +  YN  + A 
Sbjct: 187 D---MLHRGCSPSVVTYSILLDATCKASGYRQAMVLLDEMRAK-GCEPDIVTYNVLINAM 242

Query: 169 AKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHY-SLSI 227
                +  A   L  + S     + VTYT +LK     +    V E++ +   +  +   
Sbjct: 243 CNEGDVDEALNILSDLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELFAEMASNKCAPDE 302

Query: 228 FSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALP 287
            +    V S  +   +  A + + HM     +  +           SS LD         
Sbjct: 303 VTFNTIVTSLCQQGLVDRAIKVVDHMSEHGCIPDIVT--------YSSILD--------- 345

Query: 288 VMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNG 347
                     DV    GR  +   A +L+ +++S G +P +  Y   ++ + S     + 
Sbjct: 346 -------GLCDV----GRVDD---AVELLSRLKSYGCKPDTIAYTTVLKGLCSIEQWEHA 391

Query: 348 MEVLKIMQQNNLKPQDSTIATLSVE-CSKALELDLAEALLDQISRCTNPKPFSAFLAACD 406
            E++  M  ++  P + T  T+    C K L +D A  +++Q+S          + +  D
Sbjct: 392 EELMAEMVCSDCPPDEVTFNTVIASLCQKGL-VDRAIKVVEQMSENGCNPDIVTYNSIID 450

Query: 407 TMDKPERAIKIFAKMRQKL-----RPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI 461
            +   ER I    ++   L     +PDI T+  L                   VD  +  
Sbjct: 451 GLCN-ERCIDDAMELLSNLQSYGCKPDIVTFNTLL-------------KGLCSVDRWEDA 496

Query: 462 NAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYF---CDSKTPLGTPTYNTVLHS 518
             + ++M  ++      +   ++ +L  +G++ + I+      ++       TYN V+ +
Sbjct: 497 EQLMVNMMHSDCPPDATTFNTVITSLCQKGLLLQAIETLKIMAENGCIPNQSTYNIVVDA 556

Query: 519 LVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQ 578
           L++A ++  A+++   M T G P +  TYN +I   +     + A  L+ +MV +G  P 
Sbjct: 557 LLKAGKTQEALKLLSGM-TNGTP-DLITYNTVISNITKAGKMEEALDLLRVMVSNGLSPD 614

Query: 579 TMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIE 638
           T+TY +L   +      D A+ +L  +   G+  D   YN IL   C+  R D+      
Sbjct: 615 TITYRSLAYGICREDGTDRAIRMLCRLQDMGLSPDATFYNDILLGFCQNWRTDIAIDCFA 674

Query: 639 QMHQNKVQPDPST 651
            M  +   PD ST
Sbjct: 675 HMVSSGCMPDEST 687



 Score = 47.8 bits (112), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 88/435 (20%), Positives = 155/435 (35%), Gaps = 88/435 (20%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y  ++  LC  G +++A  L+  L + YG  P    Y + L     +    HA   +  M
Sbjct: 340 YSSILDGLCDVGRVDDAVELLSRL-KSYGCKPDTIAYTTVLKGLCSIEQWEHAEELMAEM 398

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNL--SAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRD 242
                  +EVT+  ++  ++ QK L   A+  + +      +  I +    +      R 
Sbjct: 399 VCSDCPPDEVTFNTVIA-SLCQKGLVDRAIKVVEQMSENGCNPDIVTYNSIIDGLCNERC 457

Query: 243 LKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNAL--PVMKVLRWSFSDVI 300
           +  A E L ++ +                    + DI +  N L   +  V RW      
Sbjct: 458 IDDAMELLSNLQSYG-----------------CKPDI-VTFNTLLKGLCSVDRWED---- 495

Query: 301 HACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLK 360
                      AEQLM+ M      P + T++  I ++     L   +E LKIM +N   
Sbjct: 496 -----------AEQLMVNMMHSDCPPDATTFNTVITSLCQKGLLLQAIETLKIMAENGCI 544

Query: 361 PQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAK 420
           P  ST   +                              A L A     K + A+K+ + 
Sbjct: 545 PNQSTYNIV----------------------------VDALLKA----GKTQEALKLLSG 572

Query: 421 MRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISM 480
           M     PD+ TY  + S   N+    + G M   +D  +        M  N +    I+ 
Sbjct: 573 MTNG-TPDLITYNTVIS---NIT---KAGKMEEALDLLRV-------MVSNGLSPDTITY 618

Query: 481 KNLLKALGAEGMIRELIQYFCDSKTPLGTPT---YNTVLHSLVEAQESHRAMEIFKQMKT 537
           ++L   +  E      I+  C  +    +P    YN +L    +   +  A++ F  M +
Sbjct: 619 RSLAYGICREDGTDRAIRMLCRLQDMGLSPDATFYNDILLGFCQNWRTDIAIDCFAHMVS 678

Query: 538 CGIPPNAATYNIMID 552
            G  P+ +TY I+++
Sbjct: 679 SGCMPDESTYIILLE 693


>gi|242061252|ref|XP_002451915.1| hypothetical protein SORBIDRAFT_04g009890 [Sorghum bicolor]
 gi|241931746|gb|EES04891.1| hypothetical protein SORBIDRAFT_04g009890 [Sorghum bicolor]
          Length = 571

 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 93/398 (23%), Positives = 166/398 (41%), Gaps = 26/398 (6%)

Query: 287 PVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRN 346
           P+  V     S+V+   G  +    A  +  Q+++   QP++  Y+  I  ++ +     
Sbjct: 153 PICVVTPTELSEVVRMLGNAKMVSKAIAIFYQIKTRKCQPTAQAYNSMIIMLMHEGQYEK 212

Query: 347 GMEVLKIMQ-QNNLKPQDSTIATLSVECSKALELDLAEALLDQI---SRCTNPKPFSAFL 402
             E+   M  + +  P   T + L     K    D A  LL+++         K ++  +
Sbjct: 213 VHELYNEMSTEGHCFPDTMTYSALISAFCKLGRRDSAIQLLNEMKDNGMQPTTKIYTMLV 272

Query: 403 AACDTMDKPERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI 461
           A    ++    A+ +F +MR Q  RPD+ TY  L    G      E  + F         
Sbjct: 273 ALFFKLNDVHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFF--------- 323

Query: 462 NAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHS 518
                +M R   +   I M N++  LG  G + + ++ F +  T    P   TYNT++ +
Sbjct: 324 ----YEMQREGCRPDTIVMNNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKA 379

Query: 519 LVEAQESHRAMEI---FKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGF 575
           L E++   RA E+   F++MK  GI P++ TY+I+ID        + A  L+  M   GF
Sbjct: 380 LFESKS--RASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGF 437

Query: 576 YPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEF 635
            P    Y +LI  L     +D A  L   +          +Y  ++K   + GR+D    
Sbjct: 438 PPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSSRVYAVMIKHLGKAGRLDDAIN 497

Query: 636 IIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           + ++M++    PD    + + SG    G  + A+  ++
Sbjct: 498 MFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMR 535



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 94/212 (44%), Gaps = 5/212 (2%)

Query: 467 DMARNNI-QHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPT---YNTVLHSLVEA 522
           +M RN I   +   +  +++ LG   M+ + I  F   KT    PT   YN+++  L+  
Sbjct: 148 EMVRNPICVVTPTELSEVVRMLGNAKMVSKAIAIFYQIKTRKCQPTAQAYNSMIIMLMHE 207

Query: 523 QESHRAMEIFKQMKTCG-IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMT 581
            +  +  E++ +M T G   P+  TY+ +I     +    SA  L++ M  +G  P T  
Sbjct: 208 GQYEKVHELYNEMSTEGHCFPDTMTYSALISAFCKLGRRDSAIQLLNEMKDNGMQPTTKI 267

Query: 582 YTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMH 641
           YT L+ +     D   AL+L + +  +    DV  Y  +++   + GRID       +M 
Sbjct: 268 YTMLVALFFKLNDVHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQ 327

Query: 642 QNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           +   +PD    + + +     G  + AM+  Q
Sbjct: 328 REGCRPDTIVMNNMINFLGKAGRLDDAMKLFQ 359


>gi|326533642|dbj|BAK05352.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 860

 Score = 90.9 bits (224), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 96/389 (24%), Positives = 161/389 (41%), Gaps = 33/389 (8%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           ++S VIH       +G A  L  +M   G++P   TY+  I A+   R +     VL+ M
Sbjct: 267 AYSTVIHGFFNEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQM 326

Query: 355 QQNNLKPQDSTI-------ATLS--VECSKALELDLAEALLDQISRCTNPKPFSAFLAAC 405
             +  +P   T        ATL    E +K         L+  I  C      ++FLA+ 
Sbjct: 327 TTDGAQPDTVTYSCMIHGYATLGRLKEAAKMFREMKKRGLIPNIVTC------NSFLASL 380

Query: 406 DTMDKPERAIKIFAKMRQKL-RPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAI 464
               + + A + F  M  K  +PDI +Y  L   + +     +   +F+ + S       
Sbjct: 381 CKHGRSKEAAEFFDSMTAKGHKPDIFSYCTLLHGYASEGCFADMIGLFNSMKS------- 433

Query: 465 EMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVE 521
                 N I  +      L+ A    GM+ + +  F + +    +P   TY+TV+ +   
Sbjct: 434 ------NGIAANCHVFTILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISTFSR 487

Query: 522 AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGF-YPQTM 580
                 AME F QM   GI PN A Y+ +I    +      A  LVS M+  G   P  +
Sbjct: 488 MGRLTDAMEKFNQMVARGIQPNTAVYSSIIQGFCMHGGLVKAKELVSEMINKGIPRPDIV 547

Query: 581 TYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQM 640
            ++++I  L   G   +A ++ DL +  G    V+ +N+++   C  G++D    I++ M
Sbjct: 548 FFSSVINSLCKDGRVMDAHDIFDLATDIGERPGVITFNSLIDGYCLVGKMDKAFKILDAM 607

Query: 641 HQNKVQPDPSTCHFVFSGYVNCGFHNSAM 669
               V+PD  T + +  GY   G  N  +
Sbjct: 608 EVVGVEPDIVTYNTLLDGYFKNGRINDGL 636



 Score = 70.9 bits (172), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 82/179 (45%), Gaps = 3/179 (1%)

Query: 511 TYNTVLHSLVEAQESHRAMEIF-KQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSM 569
           T NT+L  L  A  +  A+ +   +M   G  PNA +Y+I++         + A  L+ M
Sbjct: 194 TANTLLKCLCYANRTEEAVNVLLHRMSELGCVPNAVSYSIVLKALCDNSMSQRALDLLQM 253

Query: 570 MVRDGFY--PQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEK 627
           M + G    P  + Y+ +I    + G+  +A +L   ++ +G+  DV+ YN I+   C+ 
Sbjct: 254 MAKQGGACSPDVVAYSTVIHGFFNEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKA 313

Query: 628 GRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
             +D  E ++ QM  +  QPD  T   +  GY   G    A +  + +  R L   + T
Sbjct: 314 RAMDKAELVLRQMTTDGAQPDTVTYSCMIHGYATLGRLKEAAKMFREMKKRGLIPNIVT 372



 Score = 65.9 bits (159), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 67/304 (22%), Positives = 125/304 (41%), Gaps = 23/304 (7%)

Query: 379 LDLAEALLDQISRCT-NPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLF 436
           LDL + +  Q   C+ +   +S  +       +  +A  +F +M RQ ++PD+ TY L+ 
Sbjct: 248 LDLLQMMAKQGGACSPDVVAYSTVIHGFFNEGETGKACSLFHEMTRQGVKPDVVTYNLII 307

Query: 437 SLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIREL 496
                  A          +D A+    +   M  +  Q   ++   ++      G ++E 
Sbjct: 308 DALCKARA----------MDKAE---LVLRQMTTDGAQPDTVTYSCMIHGYATLGRLKEA 354

Query: 497 IQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC 553
            + F + K     P   T N+ L SL +   S  A E F  M   G  P+  +Y  ++  
Sbjct: 355 AKMFREMKKRGLIPNIVTCNSFLASLCKHGRSKEAAEFFDSMTAKGHKPDIFSYCTLLHG 414

Query: 554 CSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHD 613
            +   CF     L + M  +G       +T LI      G  D+A+ +   +  +G+  D
Sbjct: 415 YASEGCFADMIGLFNSMKSNGIAANCHVFTILIHAYAKRGMVDDAMLIFTEMQQQGVSPD 474

Query: 614 VLLYNTILKKACEKGRI-DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEAL 672
           V+ Y+T++      GR+ D +E    QM    +QP+ +    +  G+     H   ++A 
Sbjct: 475 VVTYSTVISTFSRMGRLTDAME-KFNQMVARGIQPNTAVYSSIIQGFC---MHGGLVKAK 530

Query: 673 QVLS 676
           +++S
Sbjct: 531 ELVS 534



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 70/294 (23%), Positives = 116/294 (39%), Gaps = 25/294 (8%)

Query: 394 NPKPFSAFLAA-CDTMDKPERAI---KIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEG 449
           N   +S  L A CD     +RA+   ++ AK      PD+  Y  +   F N     +  
Sbjct: 227 NAVSYSIVLKALCDN-SMSQRALDLLQMMAKQGGACSPDVVAYSTVIHGFFNEGETGKAC 285

Query: 450 NMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL-GAEGMIR-ELI--QYFCDSKT 505
           ++F +             M R  ++   ++   ++ AL  A  M + EL+  Q   D   
Sbjct: 286 SLFHE-------------MTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTDGAQ 332

Query: 506 PLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYN-IMIDCCSIIRCFKSAS 564
           P  T TY+ ++H          A ++F++MK  G+ PN  T N  +   C   R  K A+
Sbjct: 333 P-DTVTYSCMIHGYATLGRLKEAAKMFREMKKRGLIPNIVTCNSFLASLCKHGRS-KEAA 390

Query: 565 ALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKA 624
                M   G  P   +Y  L+      G F + + L + +   GI  +  ++  ++   
Sbjct: 391 EFFDSMTAKGHKPDIFSYCTLLHGYASEGCFADMIGLFNSMKSNGIAANCHVFTILIHAY 450

Query: 625 CEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678
            ++G +D    I  +M Q  V PD  T   V S +   G    AME    +  R
Sbjct: 451 AKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISTFSRMGRLTDAMEKFNQMVAR 504



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 85/412 (20%), Positives = 154/412 (37%), Gaps = 91/412 (22%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ +I A  + +    AE ++ QM + G QP + TY   I    +   L+   ++ + M
Sbjct: 302 TYNLIIDALCKARAMDKAELVLRQMTTDGAQPDTVTYSCMIHGYATLGRLKEAAKMFREM 361

Query: 355 QQNNLKPQDSTIAT-LSVECSKALELDLAEAL---------LDQISRCT----------- 393
           ++  L P   T  + L+  C      + AE            D  S CT           
Sbjct: 362 KKRGLIPNIVTCNSFLASLCKHGRSKEAAEFFDSMTAKGHKPDIFSYCTLLHGYASEGCF 421

Query: 394 -----------------NPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELL 435
                            N   F+  + A       + A+ IF +M+Q+ + PD+ TY  +
Sbjct: 422 ADMIGLFNSMKSNGIAANCHVFTILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTV 481

Query: 436 FSLFGNVNAPYEEGNMFSQVDSAKRI---NAIEMDMARNNIQHSH-ISMKNLLKALGAEG 491
            S F  +    +    F+Q+  A+ I    A+   + +    H   +  K L+  +  +G
Sbjct: 482 ISTFSRMGRLTDAMEKFNQM-VARGIQPNTAVYSSIIQGFCMHGGLVKAKELVSEMINKG 540

Query: 492 MIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI 551
           + R  I +F            ++V++SL +      A +IF      G  P   T+N +I
Sbjct: 541 IPRPDIVFF------------SSVINSLCKDGRVMDAHDIFDLATDIGERPGVITFNSLI 588

Query: 552 DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIP 611
           D             LV  M                         D+A  +LD + + G+ 
Sbjct: 589 D----------GYCLVGKM-------------------------DKAFKILDAMEVVGVE 613

Query: 612 HDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
            D++ YNT+L    + GRI+    +  +M +  V+P+  T   + +G    G
Sbjct: 614 PDIVTYNTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAG 665



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 108/534 (20%), Positives = 191/534 (35%), Gaps = 88/534 (16%)

Query: 151 RYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLS 210
           R G+ P +  YN  + A  K  +M  A L L  M +     + VTY+ ++        L 
Sbjct: 293 RQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTDGAQPDTVTYSCMIHGYATLGRLK 352

Query: 211 AVHEIWEDYIKHYSL-SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRT-- 267
              +++ +  K   + +I +   F+ S  +    K A E    M A      ++   T  
Sbjct: 353 EAAKMFREMKKRGLIPNIVTCNSFLASLCKHGRSKEAAEFFDSMTAKGHKPDIFSYCTLL 412

Query: 268 ----SEGRLRSSRLDIPIPLNALPVMKVLR--WSFSDVIHACGRTQNSGLAEQLML---Q 318
               SEG       D+    N++    +      F+ +IHA  +    G+ +  ML   +
Sbjct: 413 HGYASEGCF----ADMIGLFNSMKSNGIAANCHVFTILIHAYAK---RGMVDDAMLIFTE 465

Query: 319 MQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALE 378
           MQ  G+ P   TY   I        L + ME    M    ++P  +  +++         
Sbjct: 466 MQQQGVSPDVVTYSTVISTFSRMGRLTDAMEKFNQMVARGIQPNTAVYSSIIQGFCMHGG 525

Query: 379 LDLAEALLDQISRCTNPKPFSAFLA---------------------ACDTMDKP------ 411
           L  A+ L+ ++     P+P   F +                     A D  ++P      
Sbjct: 526 LVKAKELVSEMINKGIPRPDIVFFSSVINSLCKDGRVMDAHDIFDLATDIGERPGVITFN 585

Query: 412 ------------ERAIKIFAKMRQ-KLRPDIRTYELLFSLF---GNVN---APYEE---- 448
                       ++A KI   M    + PDI TY  L   +   G +N     + E    
Sbjct: 586 SLIDGYCLVGKMDKAFKILDAMEVVGVEPDIVTYNTLLDGYFKNGRINDGLTLFREMQRK 645

Query: 449 ---------GNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRE---- 495
                    G M + +  A R  A       + +  S  ++   +  +   G+ R     
Sbjct: 646 GVKPNTVTYGIMLAGLFRAGRTVAARKKF--HEMIESGTTVTVSIYGIILGGLCRNNCAD 703

Query: 496 ----LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI 551
               L Q              NT+++++ + Q    A E+F  +   G+ PN +TY +MI
Sbjct: 704 EAIILFQKLGTMNVKFSITILNTMINAMYKVQRKEEAKELFATISASGLLPNESTYGVMI 763

Query: 552 DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLV 605
                    + A+ + S M + G  P +     +I++LL+ G+  +A N L  V
Sbjct: 764 INLLKDGGVEDANNMFSSMEKSGIVPGSRLLNRIIRMLLEKGEIAKAGNYLSKV 817


>gi|125538899|gb|EAY85294.1| hypothetical protein OsI_06665 [Oryza sativa Indica Group]
          Length = 632

 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 97/432 (22%), Positives = 169/432 (39%), Gaps = 61/432 (14%)

Query: 287 PVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRN 346
           P+  V     S VI   G  +  G A  +  Q+++   QP++  Y+  I  ++ +     
Sbjct: 153 PICVVTPMELSQVIRMLGNAKMIGKAITIFYQIKARKCQPTAQAYNSMIIMLIHEGQYEK 212

Query: 347 GMEVLKIM-QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRC---TNPKPFSAFL 402
             E+   M  + + +P   T + L     K    D A  LL+++         K ++  +
Sbjct: 213 VHELYNEMSNEGHCQPDTVTYSALISAFCKLGRQDSAIRLLNEMKENGMQPTAKIYTMII 272

Query: 403 AACDTMDKPERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI 461
           +    +D    A+ +F +MR    RPD+ TY  L    G             ++D A   
Sbjct: 273 SLFFKLDNVHGALSLFEEMRYMYCRPDVFTYTELIRGLGKA----------GRIDEAYHF 322

Query: 462 NAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHS 518
                +M R   +   + M N++  LG  G + + ++ F +       P   TYNT++ +
Sbjct: 323 YH---EMQREGCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKA 379

Query: 519 LVEAQESHRAMEIF---KQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGF 575
           L E++   R  E+F   ++MK  GI P+  TY+I+ID        + A  L+  M   GF
Sbjct: 380 LFESKS--RVSEVFSWFERMKGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGF 437

Query: 576 YP-----------------------------------QTMTYTALIKILLDYGDFDEALN 600
            P                                       Y  +IK L   G  D+A+N
Sbjct: 438 PPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAIN 497

Query: 601 LLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYV 660
           L D +S  G   +V  YN ++        +D     + +M ++   PD ++ + + +G  
Sbjct: 498 LFDEMSKLGCTPNVYAYNALMSGLARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLA 557

Query: 661 NCGFHNSAMEAL 672
             G  + AME L
Sbjct: 558 KTGGPHRAMEML 569



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 58/269 (21%), Positives = 117/269 (43%), Gaps = 15/269 (5%)

Query: 326 PSSHTYDGFIRAIVSDRG-LRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEA 384
           P+  TY+  I+A+   +  +       + M+ + + P   T + L     K   ++ A  
Sbjct: 368 PNVVTYNTIIKALFESKSRVSEVFSWFERMKGSGISPSPFTYSILIDGFCKTNRIEKAMM 427

Query: 385 LLDQISRCTNPKPFSAFLAACDTMDKPER---AIKIFAKMRQKL-RPDIRTYELLFSLFG 440
           LL+++     P   +A+ +  D + K +R   A ++F ++++       R Y ++    G
Sbjct: 428 LLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLG 487

Query: 441 NVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYF 500
                 +  N+F   D   ++       A N +         L +AL     +R++ ++ 
Sbjct: 488 KAGRLDDAINLF---DEMSKLGCTPNVYAYNALMSGLARACMLDEALTT---MRKMQEHG 541

Query: 501 CDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCF 560
           C         +YN +L+ L +    HRAME+   MK   I P+A +YN ++   S    F
Sbjct: 542 CLPDIN----SYNIILNGLAKTGGPHRAMEMLTNMKNSTIKPDAVSYNTVLSALSHAGMF 597

Query: 561 KSASALVSMMVRDGFYPQTMTYTALIKIL 589
           + A+ L+  M   GF    +TY+++++ +
Sbjct: 598 EEAAELMKEMNALGFEYDLITYSSILEAI 626



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 83/389 (21%), Positives = 156/389 (40%), Gaps = 16/389 (4%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y  ++ A CK G  + A  L+  + E  G+ P   +Y   +    KL + VH  L L   
Sbjct: 233 YSALISAFCKLGRQDSAIRLLNEMKEN-GMQPTAKIYTMIISLFFKLDN-VHGALSLFEE 290

Query: 185 DSRMVGKNEV-TYTELL----KLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTR 239
              M  + +V TYTEL+    K     +     HE+  +  K  ++ + ++  F+    R
Sbjct: 291 MRYMYCRPDVFTYTELIRGLGKAGRIDEAYHFYHEMQREGCKPDTVVMNNMINFLGKAGR 350

Query: 240 LRDLKSAYETL--QHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFS 297
           L D    +E +   H +   +     I    E + R S +           +    +++S
Sbjct: 351 LDDGLKLFEEMGVSHCIPNVVTYNTIIKALFESKSRVSEVFSWFERMKGSGISPSPFTYS 410

Query: 298 DVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQN 357
            +I    +T     A  L+ +M   G  P    Y   I A+   +      E+ + +++N
Sbjct: 411 ILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKEN 470

Query: 358 NLKPQDSTIATLSVECSKALELDLAEALLDQISR--CT-NPKPFSAFLAACDTMDKPERA 414
                    A +     KA  LD A  L D++S+  CT N   ++A ++        + A
Sbjct: 471 CGSSSARVYAVMIKHLGKAGRLDDAINLFDEMSKLGCTPNVYAYNALMSGLARACMLDEA 530

Query: 415 IKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQV-DSAKRINAIEMDMARNN 472
           +    KM++    PDI +Y ++ +       P+    M + + +S  + +A+  +   + 
Sbjct: 531 LTTMRKMQEHGCLPDINSYNIILNGLAKTGGPHRAMEMLTNMKNSTIKPDAVSYNTVLSA 590

Query: 473 IQHSHI--SMKNLLKALGAEGMIRELIQY 499
           + H+ +      L+K + A G   +LI Y
Sbjct: 591 LSHAGMFEEAAELMKEMNALGFEYDLITY 619


>gi|452825793|gb|EME32788.1| mitochondrial protein translocase, MPT family [Galdieria
           sulphuraria]
          Length = 821

 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 105/445 (23%), Positives = 189/445 (42%), Gaps = 80/445 (17%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLG----LQPSSHTYDGFIRAIVSDR-----GL 344
           +++S +I   G+    GL  + + Q + +     + P++ TY+  I+ +   +     G+
Sbjct: 348 YTYSALIETLGK---GGLCVRALSQFRRMSRIDNIAPNTVTYNAVIKIVSRCKRNDCGGI 404

Query: 345 RNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSA 400
              M +L+ M      P   T ATL    SK +E + A  L  ++    N KP    +S+
Sbjct: 405 TRAMSLLREMATKGCIPDVVTYATLIDAFSKRMEPERALKLFQEMKEA-NVKPNNYCYSS 463

Query: 401 FLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAK 459
            ++A       ERA+ IF +M  +++ PD+  +  L   FG +           QVD A 
Sbjct: 464 LISAFCRAGYVERALAIFEEMTHERIVPDVFAFNALIDGFGKLR----------QVDKAF 513

Query: 460 RINAIEMDMARNNIQHSHISMKNLLKALG-AEGMIRELIQYFCDSKTPLG-TP---TYNT 514
            I      M +  IQ   I+   L+ A G A+  IR L +   D     G TP   +YN 
Sbjct: 514 EIYD---RMRKLQIQPDRITFNALISASGKAKNSIRAL-EAMGDMTEIYGLTPDRHSYNA 569

Query: 515 VLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDG 574
           ++ +  ++ +  +A E+F++M+T GI P   T+N +I   S      ++  +V +M+++G
Sbjct: 570 LIDACGKSGDFTKAYEVFEEMRTKGIRPCTVTFNALIYGASRSHDLAASFKIVDLMLQEG 629

Query: 575 FYPQTMTYTALI-------------KILLDY-------------------GDFDEALNLL 602
             P   T   LI             ++L  +                   G  D +  + 
Sbjct: 630 LNPDAYTMNTLISACNRRQDLSTAFEVLEKFKQLGVHPDNVTFNTFIDAVGKLDSSEKMF 689

Query: 603 DLVS---LEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
           +L+S     GI    +  NTI+     +G+ID++E      H+ +++PD  T   +   Y
Sbjct: 690 ELLSEMESRGISPSKVTLNTIVGCCGRRGKIDLMERGFHMFHEKRLEPDSVTFSLLIENY 749

Query: 660 VN--------CGFHNSAMEALQVLS 676
           V+          +HN   + L++ S
Sbjct: 750 VSHHLLDKAVIAYHNCKRQQLELNS 774



 Score = 75.9 bits (185), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 67/289 (23%), Positives = 125/289 (43%), Gaps = 9/289 (3%)

Query: 102 DPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLG-ERYGIYPILPV 160
           +P   ++ ++ M+E  +  NN CY  ++ A C+ GY+E A  +   +  ER  I P +  
Sbjct: 438 EPERALKLFQEMKEANVKPNNYCYSSLISAFCRAGYVERALAIFEEMTHER--IVPDVFA 495

Query: 161 YNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI 220
           +N+ +    KL  +  A    D M    +  + +T+  L+  +   KN     E   D  
Sbjct: 496 FNALIDGFGKLRQVDKAFEIYDRMRKLQIQPDRITFNALISASGKAKNSIRALEAMGDMT 555

Query: 221 KHYSLSI--FSLRKFVWSFTRLRDLKSAYETLQHMVALAMMG-KLYINRTSEGRLRSSRL 277
           + Y L+    S    + +  +  D   AYE  + M    +    +  N    G  RS  L
Sbjct: 556 EIYGLTPDRHSYNALIDACGKSGDFTKAYEVFEEMRTKGIRPCTVTFNALIYGASRSHDL 615

Query: 278 DIPIPLNALPVMKVLR---WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGF 334
                +  L + + L    ++ + +I AC R Q+   A +++ + + LG+ P + T++ F
Sbjct: 616 AASFKIVDLMLQEGLNPDAYTMNTLISACNRRQDLSTAFEVLEKFKQLGVHPDNVTFNTF 675

Query: 335 IRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAE 383
           I A+          E+L  M+   + P   T+ T+   C +  ++DL E
Sbjct: 676 IDAVGKLDSSEKMFELLSEMESRGISPSKVTLNTIVGCCGRRGKIDLME 724



 Score = 55.8 bits (133), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 73/365 (20%), Positives = 144/365 (39%), Gaps = 57/365 (15%)

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
           M E+ I  N   Y  +++ L KGG    A +    +     I P    YN+ +   ++  
Sbjct: 338 MREEHIQPNIYTYSALIETLGKGGLCVRALSQFRRMSRIDNIAPNTVTYNAVIKIVSRCK 397

Query: 173 -----SMVHANLCLDLMDSRMVGKNEVTYTELL----KLAVWQKNLSAVHEIWEDYIK-- 221
                 +  A   L  M ++    + VTY  L+    K    ++ L    E+ E  +K  
Sbjct: 398 RNDCGGITRAMSLLREMATKGCIPDVVTYATLIDAFSKRMEPERALKLFQEMKEANVKPN 457

Query: 222 HYSLS------------------------------IFSLRKFVWSFTRLRDLKSAYETLQ 251
           +Y  S                              +F+    +  F +LR +  A+E   
Sbjct: 458 NYCYSSLISAFCRAGYVERALAIFEEMTHERIVPDVFAFNALIDGFGKLRQVDKAFEIYD 517

Query: 252 HMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVL---------RWSFSDVIHA 302
            M  L    ++  +R +   L S+       + AL  M  +         R S++ +I A
Sbjct: 518 RMRKL----QIQPDRITFNALISASGKAKNSIRALEAMGDMTEIYGLTPDRHSYNALIDA 573

Query: 303 CGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQ 362
           CG++ +   A ++  +M++ G++P + T++  I        L    +++ +M Q  L P 
Sbjct: 574 CGKSGDFTKAYEVFEEMRTKGIRPCTVTFNALIYGASRSHDLAASFKIVDLMLQEGLNPD 633

Query: 363 DSTIATLSVECSKALELDLAEALLDQISRC-TNPK--PFSAFLAACDTMDKPERAIKIFA 419
             T+ TL   C++  +L  A  +L++  +   +P    F+ F+ A   +D  E+  ++ +
Sbjct: 634 AYTMNTLISACNRRQDLSTAFEVLEKFKQLGVHPDNVTFNTFIDAVGKLDSSEKMFELLS 693

Query: 420 KMRQK 424
           +M  +
Sbjct: 694 EMESR 698


>gi|224144893|ref|XP_002325452.1| predicted protein [Populus trichocarpa]
 gi|222862327|gb|EEE99833.1| predicted protein [Populus trichocarpa]
          Length = 864

 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 117/519 (22%), Positives = 217/519 (41%), Gaps = 31/519 (5%)

Query: 121 NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLC 180
           NN  Y  M+   CK G ++ A +L+  + E+  + P +  Y+S +    K   +  A   
Sbjct: 295 NNITYTAMIDGYCKLGDMDGAESLLRDM-EKKQVVPNVVTYSSIINGYTKKGMLDVAVRI 353

Query: 181 LDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDY-IKHYSLSIFSLRKFVWSFTR 239
           +  M  + +  N   Y  L+   +      A  +++ +  +     + F +  F+ +  R
Sbjct: 354 MKKMLDQNIMPNAYIYATLIDGHLKAGKQDAAVDLYNEMKLNGLEENSFIVDAFINNLKR 413

Query: 240 LRDLKSAYETLQHMVALAMMGKLYINRTS--EGRLRSSRLDIPIPLN---ALPVMKVLRW 294
            R ++ A    ++M++  ++    +N TS  +G  ++ R      +    A   +K    
Sbjct: 414 GRKMEEAEGLCKYMMSKGLLLD-RVNYTSLMDGFFKTGRESAAFTMAEKMAETGIKFDVV 472

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ +I+   R      AE +   ++ LGL P   TY+  I A      L N +++   M
Sbjct: 473 AYNVLINGLLRLGKYD-AESVYSGIRELGLAPDRATYNTMINAYCKQGKLENAIKLWNEM 531

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQI---SRCTNPKPFSAFLAACDTMDKP 411
           + +++ P   T   L    SKA E + A  +L+++     C N     A L AC   ++ 
Sbjct: 532 KGHSVMPNSITCNILVGGLSKAGETERAIDVLNEMLLWGICPNVTIHRALLNACSKCERA 591

Query: 412 ERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVN----APYEEGNMFSQVDSAKRINAIEM 466
           +  +++  ++    L+ +   Y  L ++   +     A     NM  +  SA  +     
Sbjct: 592 DTILQMHKRLVGMGLKANREVYNSLITVLCGLGMTKRATLVLNNMTKEGISADTV----- 646

Query: 467 DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESH 526
               N + H H    ++ KAL          Q   +  +P G  TYN +L  L+ A    
Sbjct: 647 --TYNALIHGHFKSSHIEKALAT------YTQMLNEGVSP-GIRTYNLLLGGLLAAGLMS 697

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
           +A EI  +MK  G+ P+A+ YN +I     I   K A      MV  G  P+T TY  LI
Sbjct: 698 KAYEILSKMKDSGLDPDASLYNTLISGHGKIGNKKEAIKFYCEMVTKGLVPKTSTYNVLI 757

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKAC 625
           +     G  D+A  LL+ + +  +P +   Y+ ++   C
Sbjct: 758 EDFAKVGKMDQARELLNEMQVRRVPPNSSTYDILICGWC 796



 Score = 62.4 bits (150), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 123/559 (22%), Positives = 205/559 (36%), Gaps = 67/559 (11%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y  ++ A CK   L EA +L Y      G  P +  Y+S +    K   +  A   L  M
Sbjct: 159 YTTLISAYCKQHGLSEALSL-YEEMISDGFLPDVVTYSSIINGLCKRGMLTEAKALLREM 217

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLK 244
           D   V  N V Y      A+   +L      WE +I    + +  +   +   T L D  
Sbjct: 218 DKMGVNPNHVVY------AILVDSLFKAGSAWESFIYQSQMIVCGVSFDLVVCTTLID-- 269

Query: 245 SAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACG 304
                          G     ++ E       L     LN +P       +++ +I    
Sbjct: 270 ---------------GLFKAGKSDEAEAMFCTL---AKLNCIPN----NITYTAMIDGYC 307

Query: 305 RTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDS 364
           +  +   AE L+  M+   + P+  TY   I        L   + ++K M   N+ P   
Sbjct: 308 KLGDMDGAESLLRDMEKKQVVPNVVTYSSIINGYTKKGMLDVAVRIMKKMLDQNIMPNAY 367

Query: 365 TIATLSVECSKALELDLAEALLDQISRCT---NPKPFSAFLAACDTMDKPERAIKIFAKM 421
             ATL     KA + D A  L +++       N     AF+       K E A  +   M
Sbjct: 368 IYATLIDGHLKAGKQDAAVDLYNEMKLNGLEENSFIVDAFINNLKRGRKMEEAEGLCKYM 427

Query: 422 RQK-LRPDIRTYELLFSLF---GNVNAPY-------EEGNMFSQVDSAKRINAIEMDMAR 470
             K L  D   Y  L   F   G  +A +       E G  F  V     IN + + + +
Sbjct: 428 MSKGLLLDRVNYTSLMDGFFKTGRESAAFTMAEKMAETGIKFDVVAYNVLINGL-LRLGK 486

Query: 471 NNIQHSHISMKNL------------LKALGAEGMIRELIQYFCDSKTPLGTP---TYNTV 515
            + +  +  ++ L            + A   +G +   I+ + + K     P   T N +
Sbjct: 487 YDAESVYSGIRELGLAPDRATYNTMINAYCKQGKLENAIKLWNEMKGHSVMPNSITCNIL 546

Query: 516 LHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSM---MVR 572
           +  L +A E+ RA+++  +M   GI PN   +  +++ CS  +C + A  ++ M   +V 
Sbjct: 547 VGGLSKAGETERAIDVLNEMLLWGICPNVTIHRALLNACS--KC-ERADTILQMHKRLVG 603

Query: 573 DGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDV 632
            G       Y +LI +L   G    A  +L+ ++ EGI  D + YN ++    +   I+ 
Sbjct: 604 MGLKANREVYNSLITVLCGLGMTKRATLVLNNMTKEGISADTVTYNALIHGHFKSSHIEK 663

Query: 633 IEFIIEQMHQNKVQPDPST 651
                 QM    V P   T
Sbjct: 664 ALATYTQMLNEGVSPGIRT 682



 Score = 57.0 bits (136), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/195 (21%), Positives = 83/195 (42%), Gaps = 35/195 (17%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC--------------CSI 556
           TY+++++ L +      A  + ++M   G+ PN   Y I++D                 +
Sbjct: 193 TYSSIINGLCKRGMLTEAKALLREMDKMGVNPNHVVYAILVDSLFKAGSAWESFIYQSQM 252

Query: 557 IRCFKSASALVSMMVRDGFY---------------------PQTMTYTALIKILLDYGDF 595
           I C  S   +V   + DG +                     P  +TYTA+I      GD 
Sbjct: 253 IVCGVSFDLVVCTTLIDGLFKAGKSDEAEAMFCTLAKLNCIPNNITYTAMIDGYCKLGDM 312

Query: 596 DEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFV 655
           D A +LL  +  + +  +V+ Y++I+    +KG +DV   I+++M    + P+      +
Sbjct: 313 DGAESLLRDMEKKQVVPNVVTYSSIINGYTKKGMLDVAVRIMKKMLDQNIMPNAYIYATL 372

Query: 656 FSGYVNCGFHNSAME 670
             G++  G  ++A++
Sbjct: 373 IDGHLKAGKQDAAVD 387



 Score = 53.9 bits (128), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 80/423 (18%), Positives = 159/423 (37%), Gaps = 64/423 (15%)

Query: 310 GLAEQLML--QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIA 367
           GL+E L L  +M S G  P   TY   I  +     L     +L+ M +  + P     A
Sbjct: 171 GLSEALSLYEEMISDGFLPDVVTYSSIINGLCKRGMLTEAKALLREMDKMGVNPNHVVYA 230

Query: 368 TLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTM-------DKPERAIKIFAK 420
            L     KA     +     Q+  C      S  L  C T+        K + A  +F  
Sbjct: 231 ILVDSLFKAGSAWESFIYQSQMIVC----GVSFDLVVCTTLIDGLFKAGKSDEAEAMFCT 286

Query: 421 MRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHIS 479
           + +    P+  TY  +      ++   + G+M    D A+   ++  DM +  +  + ++
Sbjct: 287 LAKLNCIPNNITYTAM------IDGYCKLGDM----DGAE---SLLRDMEKKQVVPNVVT 333

Query: 480 MKNLLKALGAEGMIR---ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMK 536
             +++     +GM+     +++   D         Y T++   ++A +   A++++ +MK
Sbjct: 334 YSSIINGYTKKGMLDVAVRIMKKMLDQNIMPNAYIYATLIDGHLKAGKQDAAVDLYNEMK 393

Query: 537 TCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFD 596
             G+  N+   +  I+     R  + A  L   M+  G     + YT+L+      G   
Sbjct: 394 LNGLEENSFIVDAFINNLKRGRKMEEAEGLCKYMMSKGLLLDRVNYTSLMDGFFKTGRES 453

Query: 597 EALNLLDLVSLEGIPHDVL----------------------------------LYNTILK 622
            A  + + ++  GI  DV+                                   YNT++ 
Sbjct: 454 AAFTMAEKMAETGIKFDVVAYNVLINGLLRLGKYDAESVYSGIRELGLAPDRATYNTMIN 513

Query: 623 KACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCE 682
             C++G+++    +  +M  + V P+  TC+ +  G    G    A++ L  + +  +C 
Sbjct: 514 AYCKQGKLENAIKLWNEMKGHSVMPNSITCNILVGGLSKAGETERAIDVLNEMLLWGICP 573

Query: 683 EVS 685
            V+
Sbjct: 574 NVT 576



 Score = 45.8 bits (107), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 42/199 (21%), Positives = 78/199 (39%), Gaps = 37/199 (18%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TY T++ +  +      A+ ++++M + G  P+  TY+ +I+          A AL+  M
Sbjct: 158 TYTTLISAYCKQHGLSEALSLYEEMISDGFLPDVVTYSSIINGLCKRGMLTEAKALLREM 217

Query: 571 VRDGFYPQTMTY-----------------------------------TALIKILLDYGDF 595
            + G  P  + Y                                   T LI  L   G  
Sbjct: 218 DKMGVNPNHVVYAILVDSLFKAGSAWESFIYQSQMIVCGVSFDLVVCTTLIDGLFKAGKS 277

Query: 596 DEALNLL-DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHF 654
           DEA  +   L  L  IP+++  Y  ++   C+ G +D  E ++  M + +V P+  T   
Sbjct: 278 DEAEAMFCTLAKLNCIPNNI-TYTAMIDGYCKLGDMDGAESLLRDMEKKQVVPNVVTYSS 336

Query: 655 VFSGYVNCGFHNSAMEALQ 673
           + +GY   G  + A+  ++
Sbjct: 337 IINGYTKKGMLDVAVRIMK 355



 Score = 39.7 bits (91), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 54/133 (40%), Gaps = 2/133 (1%)

Query: 537 TCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFD 596
           T  + PN  TY  +I           A +L   M+ DGF P  +TY+++I  L   G   
Sbjct: 149 TTNLEPNLVTYTTLISAYCKQHGLSEALSLYEEMISDGFLPDVVTYSSIINGLCKRGMLT 208

Query: 597 EALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIE-QMHQNKVQPDPSTCHFV 655
           EA  LL  +   G+  + ++Y  IL  +  K       FI + QM    V  D   C  +
Sbjct: 209 EAKALLREMDKMGVNPNHVVY-AILVDSLFKAGSAWESFIYQSQMIVCGVSFDLVVCTTL 267

Query: 656 FSGYVNCGFHNSA 668
             G    G  + A
Sbjct: 268 IDGLFKAGKSDEA 280


>gi|28393724|gb|AAO42273.1| unknown protein [Arabidopsis thaliana]
          Length = 642

 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 91/424 (21%), Positives = 166/424 (39%), Gaps = 57/424 (13%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM- 354
            S+++ A GR +    A  +  Q +    +P+S TY+  I  ++ +       EV   M 
Sbjct: 165 LSELVKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMC 224

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQIS-RCTNP--KPFSAFLAACDTMDKP 411
            + +  P   T + L     K    D A  L D++   C  P  K ++  L     + K 
Sbjct: 225 NEGDCFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKV 284

Query: 412 ERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           E+A+ +F +M R    P + TY  L    G             +VD A        DM R
Sbjct: 285 EKALDLFEEMKRAGCSPTVYTYTELIKGLGKA----------GRVDEA---YGFYKDMLR 331

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPT---YNTVLHSLVEAQ---- 523
           + +    + + NL+  LG  G + EL   F +      TPT   YNTV+ +L E++    
Sbjct: 332 DGLTPDVVFLNNLMNILGKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVS 391

Query: 524 --------------------------------ESHRAMEIFKQMKTCGIPPNAATYNIMI 551
                                              +A+ + ++M   G PP  A Y  +I
Sbjct: 392 EVSSWFDKMKADSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLI 451

Query: 552 DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIP 611
           +     + +++A  L   +  +     +  Y  +IK     G   EA++L + +  +G  
Sbjct: 452 NALGKAKRYEAADELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSG 511

Query: 612 HDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEA 671
            DV  YN ++    + G I+    ++ +M +N  + D ++ + + +G+   G    A+E 
Sbjct: 512 PDVYAYNALMSGMVKAGMINEANSLLRKMEENGCRADINSHNIILNGFARTGVPRRAIEM 571

Query: 672 LQVL 675
            + +
Sbjct: 572 FETI 575



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 58/288 (20%), Positives = 128/288 (44%), Gaps = 24/288 (8%)

Query: 310 GLAEQLMLQMQSLGL---QPSSHTYDGFIRAIVSDRG-LRNGMEVLKIMQQNNLKPQDST 365
           G  E+L      +G+    P+  +Y+  I+A+   +  +         M+ +++ P + T
Sbjct: 352 GRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKADSVSPSEFT 411

Query: 366 IATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPER---AIKIFAKMR 422
            + L     K   ++ A  LL+++     P   +A+ +  + + K +R   A ++F +++
Sbjct: 412 YSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAADELFKELK 471

Query: 423 QKL-RPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMK 481
           +       R Y ++   FG      E  ++F         N ++   +  ++   +  M 
Sbjct: 472 ENFGNVSSRVYAVMIKHFGKCGKLSEAVDLF---------NEMKNQGSGPDVYAYNALMS 522

Query: 482 NLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTC 538
            ++KA    GMI E   L++   ++       ++N +L+         RA+E+F+ +K  
Sbjct: 523 GMVKA----GMINEANSLLRKMEENGCRADINSHNIILNGFARTGVPRRAIEMFETIKHS 578

Query: 539 GIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
           GI P+  TYN ++ C +    F+ A+ ++  M   GF    +TY++++
Sbjct: 579 GIKPDGVTYNTLLGCFAHAGMFEEAARMMREMKDKGFEYDAITYSSIL 626



 Score = 60.1 bits (144), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 84/187 (44%), Gaps = 5/187 (2%)

Query: 467 DMARNN-IQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEA 522
           ++ RN  +  S   +  L+KALG   M+ + +  F  +K     P   TYN+V+  L++ 
Sbjct: 151 EVVRNTYVSVSPAVLSELVKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQE 210

Query: 523 QESHRAMEIFKQMKTCG-IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMT 581
            +  +  E++ +M   G   P+  TY+ +I     +    SA  L   M  +   P    
Sbjct: 211 GQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKI 270

Query: 582 YTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMH 641
           YT L+ I    G  ++AL+L + +   G    V  Y  ++K   + GR+D      + M 
Sbjct: 271 YTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDML 330

Query: 642 QNKVQPD 648
           ++ + PD
Sbjct: 331 RDGLTPD 337



 Score = 48.1 bits (113), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 56/243 (23%), Positives = 99/243 (40%), Gaps = 22/243 (9%)

Query: 318 QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKAL 377
           +M++  + PS  TY   I        +   + +L+ M +    P  +   +L     KA 
Sbjct: 399 KMKADSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAK 458

Query: 378 ELDLAEALLDQISRC---TNPKPFSAFLAACDTMDKPERAIKIFAKMR-QKLRPDIRTYE 433
             + A+ L  ++       + + ++  +       K   A+ +F +M+ Q   PD+  Y 
Sbjct: 459 RYEAADELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYN 518

Query: 434 LLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMI 493
            L S  G V A      M ++ +S  R   +E +  R +I   +I    +L      G+ 
Sbjct: 519 ALMS--GMVKA-----GMINEANSLLR--KMEENGCRADINSHNI----ILNGFARTGVP 565

Query: 494 RELIQYFCDSK----TPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNI 549
           R  I+ F   K     P G  TYNT+L     A     A  + ++MK  G   +A TY+ 
Sbjct: 566 RRAIEMFETIKHSGIKPDGV-TYNTLLGCFAHAGMFEEAARMMREMKDKGFEYDAITYSS 624

Query: 550 MID 552
           ++D
Sbjct: 625 ILD 627



 Score = 39.3 bits (90), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 34/177 (19%), Positives = 73/177 (41%), Gaps = 11/177 (6%)

Query: 482 NLLKALG-------AEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQ 534
           +L+ ALG       A+ + +EL + F +    + +  Y  ++    +  +   A+++F +
Sbjct: 449 SLINALGKAKRYEAADELFKELKENFGN----VSSRVYAVMIKHFGKCGKLSEAVDLFNE 504

Query: 535 MKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGD 594
           MK  G  P+   YN ++           A++L+  M  +G      ++  ++      G 
Sbjct: 505 MKNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKMEENGCRADINSHNIILNGFARTGV 564

Query: 595 FDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
              A+ + + +   GI  D + YNT+L      G  +    ++ +M     + D  T
Sbjct: 565 PRRAIEMFETIKHSGIKPDGVTYNTLLGCFAHAGMFEEAARMMREMKDKGFEYDAIT 621


>gi|356527777|ref|XP_003532484.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g21222-like [Glycine max]
          Length = 583

 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 89/432 (20%), Positives = 185/432 (42%), Gaps = 24/432 (5%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ ++ A  R +       L+ ++   G++P S   +  I A      +   M++ + M
Sbjct: 59  TYTTLVAALTRQKRFKSIPALLSKVADNGMKPDSILLNAMINAFSESGKVDEAMKIFQKM 118

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDK 410
           ++   KP  ST  TL      A     +  LL+ + +  N KP    ++  + A  T  K
Sbjct: 119 KEYGCKPTTSTYNTLIKGFGIAGRPYESMKLLEMMGQDENVKPNDRTYNILIQAWCTKKK 178

Query: 411 PERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
            E A  +  KM    ++PD+ TY  +                ++Q    +R   + + M 
Sbjct: 179 LEEAWNVLHKMVASGIQPDVVTYNTM-------------ARAYAQNGETERAERLILKMP 225

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESH 526
            N ++ +  +   ++     EG + E +++    K     P    +N+++   ++  +++
Sbjct: 226 YNIVKPNERTCGIIISGYCKEGNMPEALRFLYRMKELGVDPNPVVFNSLIKGYLDTTDTN 285

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
              E    M+  GI P+  T++ +++  S     ++   + + MV+ G  P    Y+ L 
Sbjct: 286 GVDEALTLMEEFGIKPDVVTFSTIMNAWSSAGLMENCEEIFNDMVKAGIEPDIHAYSILA 345

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
           K  +  G   +A  LL  +S  G+  +V+++ TI+   C  G++D    + E+MH+    
Sbjct: 346 KGYVRAGQPRKAEALLTSMSKYGVQPNVVIFTTIISGWCAAGKMDRAFRLCEKMHEMGTS 405

Query: 647 PDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDFEDLILAEDSEAE 706
           P+  T   +  GY        A E L  +  R +  E+ST++     +  + L +++   
Sbjct: 406 PNLKTYETLIWGYGEAKQPWKAEELLTTMEERGVVPEMSTMQLVADAWRAIGLFKEA--- 462

Query: 707 SRILQFCEDSNE 718
           +RIL   E+ +E
Sbjct: 463 NRILNGSEEESE 474



 Score = 56.2 bits (134), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 35/146 (23%), Positives = 68/146 (46%), Gaps = 1/146 (0%)

Query: 515 VLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDG 574
           ++++L+   + H A  +F  +   G  P   TY  ++   +  + FKS  AL+S +  +G
Sbjct: 28  LMNTLIGKGKPHEAQAVFNNLTEEGHKPTLITYTTLVAALTRQKRFKSIPALLSKVADNG 87

Query: 575 FYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIE 634
             P ++   A+I    + G  DEA+ +   +   G       YNT++K     GR     
Sbjct: 88  MKPDSILLNAMINAFSESGKVDEAMKIFQKMKEYGCKPTTSTYNTLIKGFGIAGRPYESM 147

Query: 635 FIIEQMHQNK-VQPDPSTCHFVFSGY 659
            ++E M Q++ V+P+  T + +   +
Sbjct: 148 KLLEMMGQDENVKPNDRTYNILIQAW 173



 Score = 49.7 bits (117), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 3/115 (2%)

Query: 563 ASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILK 622
           A A+ + +  +G  P  +TYT L+  L     F     LL  V+  G+  D +L N ++ 
Sbjct: 41  AQAVFNNLTEEGHKPTLITYTTLVAALTRQKRFKSIPALLSKVADNGMKPDSILLNAMIN 100

Query: 623 KACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSM 677
              E G++D    I ++M +   +P  ST + +  G+   G      E++++L M
Sbjct: 101 AFSESGKVDEAMKIFQKMKEYGCKPTTSTYNTLIKGF---GIAGRPYESMKLLEM 152


>gi|299471552|emb|CBN80038.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 416

 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 94/389 (24%), Positives = 164/389 (42%), Gaps = 36/389 (9%)

Query: 299 VIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNN 358
           VI ACGR      A +L+ +M + GL P+  TY+    A       +  + +LK M    
Sbjct: 36  VITACGRGGQWEQAVKLLREMPTAGLSPNVITYNAVFAACAKGEQWKGALALLKEMTAVG 95

Query: 359 LKPQDSTIATLSVECSKALELDLAEALLDQISRCT-NPK--PFSAFLAACDTMDKPERAI 415
           L P   T ++    C+K  +   A ALL +++     P    +S+ + AC   ++ + A+
Sbjct: 96  LTPDVITYSSAVDACAKGEQWKGALALLKEMTAVGLTPDVITYSSAVDACAKGEQWKEAL 155

Query: 416 KIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSA------KRINAIEMDM 468
            +  +M    L P++ +Y  L S+     +P+   N  S +D        K   A+  +M
Sbjct: 156 ALLKEMTAVGLTPNVISYNGLPSM-----SPWCTYN--SAIDGCSKGGQWKETLALLKEM 208

Query: 469 ARNNIQHSHISMKN----------------LLKALGAEGMIRELIQYFCDSKTPLGTPTY 512
           A   +  + I+  +                LLK + A G+  ++I Y   S     +   
Sbjct: 209 AAVGLTPNVITYNSAIDACSKGGQWKEALALLKEMTAVGLTPDVISY--SSAIDACSKGA 266

Query: 513 NTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVR 572
              L    + ++   A+ + K+M   G+ PN  +Y+  I C    + +K A AL+  M  
Sbjct: 267 TAQLFPCAKGEQWKGALALLKEMTVVGLTPNVVSYSAAIACAKGDQ-WKVALALLKKMTA 325

Query: 573 DGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDV 632
            G  P  +T  + I      G ++ AL LL  ++  G+   V+ YN+ +      GR   
Sbjct: 326 VGLTPDVITCNSAIDACSKGGQWETALALLKEMAAVGLTPSVVGYNSAIDACARGGRWKE 385

Query: 633 IEFIIEQMHQNKVQPDPSTCHFVFSGYVN 661
              ++E+M +  V PD  T H +    VN
Sbjct: 386 GVDLLEEMRELGVVPDVITYHALMVTCVN 414



 Score = 62.4 bits (150), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 93/479 (19%), Positives = 176/479 (36%), Gaps = 97/479 (20%)

Query: 120 LNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANL 179
           L+ K + +++ A  +GG  E+A  L+  +    G+ P +  YN+   ACAK      A  
Sbjct: 28  LHQKSHCMVITACGRGGQWEQAVKLLREM-PTAGLSPNVITYNAVFAACAKGEQWKGALA 86

Query: 180 CLDLMDSRMVGKNEVTYTELL----KLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVW 235
            L  M +  +  + +TY+  +    K   W+  L+ + E+        +  + +    V 
Sbjct: 87  LLKEMTAVGLTPDVITYSSAVDACAKGEQWKGALALLKEM---TAVGLTPDVITYSSAVD 143

Query: 236 SFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRW- 294
           +  +    K A   L+ M A+ +   +                  I  N LP M    W 
Sbjct: 144 ACAKGEQWKEALALLKEMTAVGLTPNV------------------ISYNGLPSMS--PWC 183

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++  I  C +         L+ +M ++GL P+  TY+  I A       +  + +LK M
Sbjct: 184 TYNSAIDGCSKGGQWKETLALLKEMAAVGLTPNVITYNSAIDACSKGGQWKEALALLKEM 243

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERA 414
               L P   + ++    CSK                       +A L  C   ++ + A
Sbjct: 244 TAVGLTPDVISYSSAIDACSKG---------------------ATAQLFPCAKGEQWKGA 282

Query: 415 IKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNI 473
           + +  +M    L P++ +Y    +                               A+ + 
Sbjct: 283 LALLKEMTVVGLTPNVVSYSAAIAC------------------------------AKGDQ 312

Query: 474 QHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFK 533
               ++   LLK + A G+  ++I             T N+ + +  +  +   A+ + K
Sbjct: 313 WKVALA---LLKKMTAVGLTPDVI-------------TCNSAIDACSKGGQWETALALLK 356

Query: 534 QMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDY 592
           +M   G+ P+   YN  ID C+    +K    L+  M   G  P  +TY AL+   ++Y
Sbjct: 357 EMAAVGLTPSVVGYNSAIDACARGGRWKEGVDLLEEMRELGVVPDVITYHALMVTCVNY 415


>gi|147812173|emb|CAN61517.1| hypothetical protein VITISV_033966 [Vitis vinifera]
          Length = 635

 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 80/381 (20%), Positives = 165/381 (43%), Gaps = 21/381 (5%)

Query: 315 LMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECS 374
           ++ Q++  G++P S  ++  I A      ++  M+    M+++  KP  ST  TL     
Sbjct: 129 IISQVEENGMEPDSIFFNAVINAFSESGNMQEAMKYFWKMKESGSKPTTSTFNTLIKGYG 188

Query: 375 KALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDKPERAIKIFAKM-RQKLRPDI 429
            A E + ++ LL+ +S+  N +P    ++  + A        +A  +  KM    L+PD 
Sbjct: 189 IAGEPEESQKLLZLMSQDENVRPNLRTYNVLVRAWCNKXNIMKAWNVVYKMVASGLQPDA 248

Query: 430 RTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGA 489
            TY  +                ++Q   A +   I ++M  +N+Q +  +   ++     
Sbjct: 249 VTYNTI-------------ATAYAQNGEASQAEGIILEMQNSNVQPNERTCCIIIGGYCK 295

Query: 490 EGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAAT 546
           EG I+E +Q+    K     P    +N+++   ++A +     E+   M+  G+ P+  T
Sbjct: 296 EGKIKEALQFVYRMKDLGLQPNLVVFNSLIKGFIDAVDRDGVNEVLTLMEEFGVKPDVIT 355

Query: 547 YNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVS 606
           ++ +++  S          +   MV+    P    Y+ L K  +  G+ ++A  +L+ + 
Sbjct: 356 FSTIMNAWSAAGFMDKCREIFDDMVKARIQPDAHVYSILAKGYVRAGEPEKAEEILNAMI 415

Query: 607 LEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHN 666
             G   +V+++ TI+   C  GR++    I E+M +  + P+  T   +  GY       
Sbjct: 416 KSGFHPNVVMFTTIINGWCSAGRMEYAIKIFEKMCECGIAPNLKTFETLIWGYGEARQPW 475

Query: 667 SAMEALQVLSMRMLCEEVSTL 687
            + E LQ++    +  E +TL
Sbjct: 476 KSEEVLQIMEEFNVQPEKTTL 496



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 85/216 (39%), Gaps = 36/216 (16%)

Query: 461 INAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLV 520
           I++I   +  N ++   I    ++ A    G ++E ++YF                    
Sbjct: 126 IHSIISQVEENGMEPDSIFFNAVINAFSESGNMQEAMKYFW------------------- 166

Query: 521 EAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRD-GFYPQT 579
                        +MK  G  P  +T+N +I    I    + +  L+ +M +D    P  
Sbjct: 167 -------------KMKESGSKPTTSTFNTLIKGYGIAGEPEESQKLLZLMSQDENVRPNL 213

Query: 580 MTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQ 639
            TY  L++   +  +  +A N++  +   G+  D + YNTI     + G     E II +
Sbjct: 214 RTYNVLVRAWCNKXNIMKAWNVVYKMVASGLQPDAVTYNTIATAYAQNGEASQAEGIILE 273

Query: 640 MHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
           M  + VQP+  TC  +  GY   G      EALQ +
Sbjct: 274 MQNSNVQPNERTCCIIIGGYCKEG---KIKEALQFV 306



 Score = 46.6 bits (109), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 34/163 (20%), Positives = 73/163 (44%), Gaps = 2/163 (1%)

Query: 501 CDSKTPLGTPTYNT-VLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRC 559
           C SKT   T    T +++ ++E         I   +   G  P+  TY  ++   +I + 
Sbjct: 63  CLSKTSCRTVRSRTKLMNIMIEKGRPQEVQSILDSIIEGGHKPSLVTYTTLLAALTIQKH 122

Query: 560 FKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNT 619
           F S  +++S +  +G  P ++ + A+I    + G+  EA+     +   G       +NT
Sbjct: 123 FDSIHSIISQVEENGMEPDSIFFNAVINAFSESGNMQEAMKYFWKMKESGSKPTTSTFNT 182

Query: 620 ILKKACEKGRIDVIEFIIEQMHQNK-VQPDPSTCHFVFSGYVN 661
           ++K     G  +  + ++Z M Q++ V+P+  T + +   + N
Sbjct: 183 LIKGYGIAGEPEESQKLLZLMSQDENVRPNLRTYNVLVRAWCN 225



 Score = 43.9 bits (102), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 68/327 (20%), Positives = 128/327 (39%), Gaps = 28/327 (8%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A  ++ +M + GLQP + TY+    A   +        ++  MQ +N++P + T   +  
Sbjct: 232 AWNVVYKMVASGLQPDAVTYNTIATAYAQNGEASQAEGIILEMQNSNVQPNERTCCIIIG 291

Query: 372 ECSKALELDLAEAL-----LDQISRCTNPKPFSAFLAA-CDTMDKPERAIKIFAKMRQ-K 424
              K  E  + EAL     +  +    N   F++ +    D +D+ +   ++   M +  
Sbjct: 292 GYCK--EGKIKEALQFVYRMKDLGLQPNLVVFNSLIKGFIDAVDR-DGVNEVLTLMEEFG 348

Query: 425 LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQ-HSH---ISM 480
           ++PD+ T+  +              N +S      +   I  DM +  IQ  +H   I  
Sbjct: 349 VKPDVITFSTIM-------------NAWSAAGFMDKCREIFDDMVKARIQPDAHVYSILA 395

Query: 481 KNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGI 540
           K  ++A G      E++     S        + T+++    A     A++IF++M  CGI
Sbjct: 396 KGYVRA-GEPEKAEEILNAMIKSGFHPNVVMFTTIINGWCSAGRMEYAIKIFEKMCECGI 454

Query: 541 PPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALN 600
            PN  T+  +I      R    +  ++ +M      P+  T   + +     G   EA  
Sbjct: 455 APNLKTFETLIWGYGEARQPWKSEEVLQIMEEFNVQPEKTTLLLVAEAWRATGLKKEANR 514

Query: 601 LLDLVSLEGIPHDVLLYNTILKKACEK 627
           +L  V  E   H+    + I   + EK
Sbjct: 515 ILSAVKNEETTHETDREDKIPVGSSEK 541



 Score = 43.1 bits (100), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 24/112 (21%), Positives = 51/112 (45%)

Query: 565 ALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKA 624
           +++  ++  G  P  +TYT L+  L     FD   +++  V   G+  D + +N ++   
Sbjct: 93  SILDSIIEGGHKPSLVTYTTLLAALTIQKHFDSIHSIISQVEENGMEPDSIFFNAVINAF 152

Query: 625 CEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
            E G +        +M ++  +P  ST + +  GY   G    + + LZ++S
Sbjct: 153 SESGNMQEAMKYFWKMKESGSKPTTSTFNTLIKGYGIAGEPEESQKLLZLMS 204



 Score = 42.0 bits (97), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 87/217 (40%), Gaps = 26/217 (11%)

Query: 552 DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIP 611
           D  S +RC    S      VR        + T L+ I+++ G   E  ++LD +   G  
Sbjct: 53  DPQSQVRCISCLSKTSCRTVR--------SRTKLMNIMIEKGRPQEVQSILDSIIEGGHK 104

Query: 612 HDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEA 671
             ++ Y T+L     +   D I  II Q+ +N ++PD    + V + +   G    AM+ 
Sbjct: 105 PSLVTYTTLLAALTIQKHFDSIHSIISQVEENGMEPDSIFFNAVINAFSESGNMQEAMKY 164

Query: 672 LQVLSMRMLCEEVSTLEEKRSDFEDLI----LAEDSEAESRILQFC---EDSNENLAFTA 724
              +       + S  +   S F  LI    +A + E   ++LZ     E+   NL  T 
Sbjct: 165 FWKM-------KESGSKPTTSTFNTLIKGYGIAGEPEESQKLLZLMSQDENVRPNLR-TY 216

Query: 725 ALLQLRWCTIVGFPISWSLDR---ASGLEDSQTNSNS 758
            +L   WC       +W++     ASGL+      N+
Sbjct: 217 NVLVRAWCNKXNIMKAWNVVYKMVASGLQPDAVTYNT 253


>gi|357499975|ref|XP_003620276.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495291|gb|AES76494.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 590

 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 96/419 (22%), Positives = 172/419 (41%), Gaps = 77/419 (18%)

Query: 318 QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL-SVECSKA 376
           ++ +LG      +Y   I  +      R  +++L+ +  N ++P      T+    C   
Sbjct: 180 KVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVK 239

Query: 377 LELDLAEALLDQISRCTNPK--PFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYE 433
           L  +  +   + +S+  +P    +SA ++    + K + AI +F KM  + ++PD+ T+ 
Sbjct: 240 LVNEAFDLFSEMVSKGISPDVVTYSALISGFCILGKLKDAIDLFNKMILENIKPDVYTFN 299

Query: 434 LLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMI 493
           +L      VNA  ++G M       K    +   M +  I+ + +               
Sbjct: 300 IL------VNAFCKDGKM-------KEGKTVFDMMMKQGIKPNFV--------------- 331

Query: 494 RELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC 553
                            TYN+++      +E ++A  IF  M   G+ P+  +Y+IMI+ 
Sbjct: 332 -----------------TYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMING 374

Query: 554 CSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHD 613
              I+ F  A  L   M R    P  +TY++LI  L   G    AL L+D +   G+P +
Sbjct: 375 FCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPN 434

Query: 614 VLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           +  YN+IL   C+  ++D    ++ +      QPD ST   +  G               
Sbjct: 435 ICTYNSILDALCKTHQVDKAIALLTKFKDKGFQPDISTYSILIKG--------------- 479

Query: 674 VLSMRMLCEEVSTLEEKRSDFEDLILAE---DSEAESRILQ-FCEDS--NENLAFTAAL 726
                 LC+    LE+ R  FEDL++     D  A + ++Q FC +   NE LA  + +
Sbjct: 480 ------LCQS-GKLEDARKVFEDLLVKGYNLDVYAYTIMIQGFCVEGLFNEALALLSKM 531



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 77/336 (22%), Positives = 139/336 (41%), Gaps = 20/336 (5%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A  L  +M S G+ P   TY   I        L++ +++   M   N+KP   T   L  
Sbjct: 244 AFDLFSEMVSKGISPDVVTYSALISGFCILGKLKDAIDLFNKMILENIKPDVYTFNILVN 303

Query: 372 ECSKALELDLAEALLDQISRCTNPKPFSAFLAACDT---MDKPERAIKIFAKMRQK-LRP 427
              K  ++   + + D + +      F  + +  D    + +  +A  IF  M Q  + P
Sbjct: 304 AFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNP 363

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL 487
           DI++Y ++ + F  +    E  N+F +             M R NI    ++  +L+  L
Sbjct: 364 DIQSYSIMINGFCKIKKFDEAMNLFKE-------------MHRKNIIPDVVTYSSLIDGL 410

Query: 488 GAEGMIR---ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNA 544
              G I    +L+    D   P    TYN++L +L +  +  +A+ +  + K  G  P+ 
Sbjct: 411 SKSGRISYALQLVDQMHDRGVPPNICTYNSILDALCKTHQVDKAIALLTKFKDKGFQPDI 470

Query: 545 ATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDL 604
           +TY+I+I         + A  +   ++  G+      YT +I+     G F+EAL LL  
Sbjct: 471 STYSILIKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTIMIQGFCVEGLFNEALALLSK 530

Query: 605 VSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQM 640
           +   G   D   Y  I+    +K   D+ E ++ +M
Sbjct: 531 MEDNGCIPDAKTYEIIILSLFKKDENDMAEKLLREM 566



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 91/186 (48%), Gaps = 5/186 (2%)

Query: 478 ISMKNLLKALGAEGMIRELIQYFCDSKTPLG----TPTYNTVLHSLVEAQESHRAMEIFK 533
           I+   L K L  +G I++    F D    LG      +Y T++H L +  E+  A+++ +
Sbjct: 156 ITFTTLSKGLCLKGQIQQAF-LFHDKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQ 214

Query: 534 QMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYG 593
           ++    + PN   YN +ID    ++    A  L S MV  G  P  +TY+ALI      G
Sbjct: 215 RVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMVSKGISPDVVTYSALISGFCILG 274

Query: 594 DFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCH 653
              +A++L + + LE I  DV  +N ++   C+ G++   + + + M +  ++P+  T +
Sbjct: 275 KLKDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYN 334

Query: 654 FVFSGY 659
            +  GY
Sbjct: 335 SLMDGY 340



 Score = 66.2 bits (160), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 84/183 (45%)

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           +N +L SLV+++  H  + + ++M+  GI PN    NI+I+C   +     A ++ + ++
Sbjct: 88  FNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKIL 147

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
           + G+ P T+T+T L K L   G   +A    D V   G   D + Y T++   C+ G   
Sbjct: 148 KMGYVPDTITFTTLSKGLCLKGQIQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVGETR 207

Query: 632 VIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKR 691
               +++++  N VQP+    + +          N A +    +  + +  +V T     
Sbjct: 208 AALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMVSKGISPDVVTYSALI 267

Query: 692 SDF 694
           S F
Sbjct: 268 SGF 270



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 74/382 (19%), Positives = 156/382 (40%), Gaps = 36/382 (9%)

Query: 181 LDLM---DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYSLSIFSLRKFVWS 236
           LDL+   D  +V  N V Y  ++      K ++   +++ + + K  S  + +    +  
Sbjct: 210 LDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMVSKGISPDVVTYSALISG 269

Query: 237 FTRLRDLKSAYETLQHMVALAMMGKLY-----INR-TSEGRLRSSR--LDIPIPLNALPV 288
           F  L  LK A +    M+   +   +Y     +N    +G+++  +   D+ +     P 
Sbjct: 270 FCILGKLKDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPN 329

Query: 289 MKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGM 348
                 +++ ++      +    A+ +   M   G+ P   +Y   I      +     M
Sbjct: 330 F----VTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAM 385

Query: 349 EVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI-SRCTNPK--PFSAFLAAC 405
            + K M + N+ P   T ++L    SK+  +  A  L+DQ+  R   P    +++ L A 
Sbjct: 386 NLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPNICTYNSILDAL 445

Query: 406 DTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAI 464
               + ++AI +  K + K  +PDI TY +L      +    + G    +++ A+++   
Sbjct: 446 CKTHQVDKAIALLTKFKDKGFQPDISTYSIL------IKGLCQSG----KLEDARKVFED 495

Query: 465 EMDMARNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVE 521
            +    N   +++  M   ++    EG+  E   L+    D+       TY  ++ SL +
Sbjct: 496 LLVKGYNLDVYAYTIM---IQGFCVEGLFNEALALLSKMEDNGCIPDAKTYEIIILSLFK 552

Query: 522 AQESHRAMEIFKQMKTCGIPPN 543
             E+  A ++ ++M   G+P N
Sbjct: 553 KDENDMAEKLLREMIARGLPLN 574



 Score = 39.7 bits (91), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 58/132 (43%), Gaps = 2/132 (1%)

Query: 107 METWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLG 166
           M  ++ M  K I  +   Y  ++  L K G +  A  L+  + +R G+ P +  YNS L 
Sbjct: 385 MNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDR-GVPPNICTYNSILD 443

Query: 167 ACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWED-YIKHYSL 225
           A  K H +  A   L     +    +  TY+ L+K       L    +++ED  +K Y+L
Sbjct: 444 ALCKTHQVDKAIALLTKFKDKGFQPDISTYSILIKGLCQSGKLEDARKVFEDLLVKGYNL 503

Query: 226 SIFSLRKFVWSF 237
            +++    +  F
Sbjct: 504 DVYAYTIMIQGF 515


>gi|357144033|ref|XP_003573143.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g38730-like [Brachypodium distachyon]
          Length = 599

 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 69/260 (26%), Positives = 119/260 (45%), Gaps = 11/260 (4%)

Query: 410 KPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
           +P  A ++F +MR + L PD      L +             +F+++  A     + M+ 
Sbjct: 126 RPHDAARVFDQMRARGLAPDAHACTALLTALARARMTATAHKVFNEMGRA----GVAMNT 181

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRA 528
              N    H+ +K    AL AEG++  +      +  PL   ++NTV+   V     + A
Sbjct: 182 HVYNAM-LHVCLKAR-DALRAEGLMTRMDA----AGVPLDRFSFNTVIALYVRKGMQYEA 235

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
           M + ++M+  G+ P+  T+N +I         K A+ L + M+     P T+TYT L+  
Sbjct: 236 MCVRERMQDEGVEPDIVTWNTVIHGLCKEGRMKEAAQLRTDMIAAAVEPDTVTYTTLVDG 295

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
               GD  EA+ L + +   G+   V  YN I++K CE G++  +  ++ +M   KVQ D
Sbjct: 296 YCRIGDVGEAVKLREEMEAGGMVPGVATYNAIIRKLCEDGKMKEVNGLLSEMDGRKVQAD 355

Query: 649 PSTCHFVFSGYVNCGFHNSA 668
             TC+ + + Y   G   SA
Sbjct: 356 HVTCNTLINSYAKRGDMTSA 375



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 79/377 (20%), Positives = 160/377 (42%), Gaps = 32/377 (8%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLR-NGMEVLKIM 354
           ++ ++H C + +++  AE LM +M + G+     +++  I A+   +G++   M V + M
Sbjct: 184 YNAMLHVCLKARDALRAEGLMTRMDAAGVPLDRFSFNTVI-ALYVRKGMQYEAMCVRERM 242

Query: 355 QQNNLKPQDSTIAT-LSVECSKALELDLAEALLDQISRCTNPKPFSAFL---AACDTMDK 410
           Q   ++P   T  T +   C +    + A+   D I+    P   +        C   D 
Sbjct: 243 QDEGVEPDIVTWNTVIHGLCKEGRMKEAAQLRTDMIAAAVEPDTVTYTTLVDGYCRIGDV 302

Query: 411 PERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
            E A+K+  +M    + P + TY  +           E+G M       K +N +  +M 
Sbjct: 303 GE-AVKLREEMEAGGMVPGVATYNAIIRKL------CEDGKM-------KEVNGLLSEMD 348

Query: 470 RNNIQHSHISMKNLLKALGAEGMIR---ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESH 526
              +Q  H++   L+ +    G +    ++ +   +S   L   TY  ++H   +A+E  
Sbjct: 349 GRKVQADHVTCNTLINSYAKRGDMTSACKVKKRMMESGLQLDQFTYKALIHGFCKAKELD 408

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSM----MVRDGFYPQTMTY 582
            A E   +M   G  PN + ++ ++D      C K+ +  V +    +++ G  P    Y
Sbjct: 409 EAKEALFEMMGRGFSPNYSVFSWLVDGF----CKKNNTDAVLLIPDELIKRGLPPDKSVY 464

Query: 583 TALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642
            +LI+ L   G  D A  +L  +  +G+  D L+Y T+       G++     I+ +M +
Sbjct: 465 RSLIRRLCKKGLVDLAQKVLHQMQGKGLEVDCLVYATLAYAHLTAGKVAAASDILNEMAR 524

Query: 643 NKVQPDPSTCHFVFSGY 659
            ++   P   + + + Y
Sbjct: 525 KQMSVTPQIYNCLCTSY 541



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 65/155 (41%)

Query: 509 TPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVS 568
            P++  +  S   +   H A  +F QM+  G+ P+A     ++   +  R   +A  + +
Sbjct: 111 VPSWLLLALSHSHSARPHDAARVFDQMRARGLAPDAHACTALLTALARARMTATAHKVFN 170

Query: 569 MMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
            M R G    T  Y A++ + L   D   A  L+  +   G+P D   +NT++     KG
Sbjct: 171 EMGRAGVAMNTHVYNAMLHVCLKARDALRAEGLMTRMDAAGVPLDRFSFNTVIALYVRKG 230

Query: 629 RIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
                  + E+M    V+PD  T + V  G    G
Sbjct: 231 MQYEAMCVRERMQDEGVEPDIVTWNTVIHGLCKEG 265



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 75/380 (19%), Positives = 143/380 (37%), Gaps = 57/380 (15%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A ++  QM++ GL P +H     + A+   R      +V   M +  +         +  
Sbjct: 130 AARVFDQMRARGLAPDAHACTALLTALARARMTATAHKVFNEMGRAGVAMNTHVYNAMLH 189

Query: 372 ECSKALELDLAEALLDQISRCTNPK---PFSAFLAACDTMDKPERAIKIFAKMR-QKLRP 427
            C KA +   AE L+ ++     P     F+  +A          A+ +  +M+ + + P
Sbjct: 190 VCLKARDALRAEGLMTRMDAAGVPLDRFSFNTVIALYVRKGMQYEAMCVRERMQDEGVEP 249

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKA- 486
           DI T+  +      ++   +EG M       K    +  DM    ++   ++   L+   
Sbjct: 250 DIVTWNTV------IHGLCKEGRM-------KEAAQLRTDMIAAAVEPDTVTYTTLVDGY 296

Query: 487 --LGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVE------------------AQESH 526
             +G  G   +L +         G  TYN ++  L E                   Q  H
Sbjct: 297 CRIGDVGEAVKLREEMEAGGMVPGVATYNAIIRKLCEDGKMKEVNGLLSEMDGRKVQADH 356

Query: 527 -----------------RAMEIFKQMKTCGIPPNAATYNIMIDC-CSIIRCFKSASALVS 568
                             A ++ K+M   G+  +  TY  +I   C      ++  AL  
Sbjct: 357 VTCNTLINSYAKRGDMTSACKVKKRMMESGLQLDQFTYKALIHGFCKAKELDEAKEALFE 416

Query: 569 MMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
           MM R GF P    ++ L+       + D  L + D +   G+P D  +Y +++++ C+KG
Sbjct: 417 MMGR-GFSPNYSVFSWLVDGFCKKNNTDAVLLIPDELIKRGLPPDKSVYRSLIRRLCKKG 475

Query: 629 RIDVIEFIIEQMHQNKVQPD 648
            +D+ + ++ QM    ++ D
Sbjct: 476 LVDLAQKVLHQMQGKGLEVD 495


>gi|302774715|ref|XP_002970774.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
 gi|300161485|gb|EFJ28100.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
          Length = 497

 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 87/366 (23%), Positives = 149/366 (40%), Gaps = 24/366 (6%)

Query: 319 MQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALE 378
           M+  G +P+  TY+  I  +  +       E+ + M+     P   T  TL     +  +
Sbjct: 1   MRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGK 60

Query: 379 LDLAEALLDQI--SRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLF 436
           L+ A AL  ++   R  +   F+  +       K E A++ F KM  +  P++ TY +L 
Sbjct: 61  LERAMALFQEMLDRRSHDVISFNILVTGLCRAGKIETALEFFRKMDDRCSPNVITYSVLI 120

Query: 437 SLFGNVNAPYEEGNMFSQVDSAKRINAIEM--DMARNNIQHSHISMKNLLKALGAEGMIR 494
                      + N  SQ        A+E+   M         I+   L+  L  E  + 
Sbjct: 121 DGLC-------KANRVSQ--------AVELLESMKARGCSPDVITYTILVDGLCKESKVA 165

Query: 495 ---ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI 551
              E+++   D+       TYN++LH L  A+    A+ + + M   G  PN  TY  +I
Sbjct: 166 AAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLI 225

Query: 552 D-CCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGI 610
           D  C + R  K A A+++ M+  G  P  M Y  LI  L      DE++ LL      GI
Sbjct: 226 DGLCKVGR-VKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGI 284

Query: 611 PHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAME 670
             DV+ Y++++   C   R+D    ++  +      PD      +  G    G  + A +
Sbjct: 285 KPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFD 344

Query: 671 ALQVLS 676
             +V++
Sbjct: 345 LYEVMT 350



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 112/518 (21%), Positives = 194/518 (37%), Gaps = 59/518 (11%)

Query: 152 YGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSA 211
           +G  P +  YNS +    K +    A    + M S     + VTY  LL        L  
Sbjct: 4   HGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLER 63

Query: 212 VHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGR 271
              ++++ +   S  + S    V    R   +++A E  + M        +  +   +G 
Sbjct: 64  AMALFQEMLDRRSHDVISFNILVTGLCRAGKIETALEFFRKMDDRCSPNVITYSVLIDGL 123

Query: 272 LRSSRLDIPIPLNALPVMKVLRWSFSDVIHAC----GRTQNSGLAE--QLMLQMQSLGLQ 325
            +++R+   + L  L  MK  R    DVI       G  + S +A   +++ +M   G  
Sbjct: 124 CKANRVSQAVEL--LESMKA-RGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCV 180

Query: 326 PSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEAL 385
           P+  TY+  +  +   R + + + +++ M      P   T  TL                
Sbjct: 181 PNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTL---------------- 224

Query: 386 LDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAP 445
           +D + +    K   A LA  D +DK                PD+  Y +L          
Sbjct: 225 IDGLCKVGRVKDACAMLA--DMIDKGGT-------------PDLMIYNMLI--------- 260

Query: 446 YEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCD 502
               N   + D      A+        I+   ++  +++  L     + E   L+ Y   
Sbjct: 261 ----NGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKS 316

Query: 503 SKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID-CCSIIRCFK 561
              P     Y+T++  L +A +   A ++++ M   G   +  TY+ +ID  C   R   
Sbjct: 317 RGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMTGDGCDADVVTYSTLIDGLCKAGR-VD 375

Query: 562 SASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTIL 621
            A  L++ MVR G  P TMTY +LIK L D    DEA+ L++ +         + YN ++
Sbjct: 376 EAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILI 435

Query: 622 KKACEKGRIDVIEF-IIEQMHQNKVQPDPSTCHFVFSG 658
              C   R+D       ++M  N V PD  T   +  G
Sbjct: 436 HGMCRMERVDSAALDYFQEMIDNGVIPDHITYSILLEG 473



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 81/409 (19%), Positives = 175/409 (42%), Gaps = 33/409 (8%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ +I    +      A++L   M+S+   PS  TY+  +  +     L   M + + M
Sbjct: 12  TYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEM 71

Query: 355 QQNNLKPQDS-TIATLSVECSKALELDLAEALLDQIS-RCT-NPKPFSAFLAACDTMDKP 411
                +  D  +   L     +A +++ A     ++  RC+ N   +S  +      ++ 
Sbjct: 72  LDR--RSHDVISFNILVTGLCRAGKIETALEFFRKMDDRCSPNVITYSVLIDGLCKANRV 129

Query: 412 ERAIKIFAKMRQK-LRPDIRTYELLFSLF---GNVNAPYE----------------EGNM 451
            +A+++   M+ +   PD+ TY +L         V A +E                  ++
Sbjct: 130 SQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSL 189

Query: 452 FSQVDSAKRIN---AIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLG 508
              +  A+R++   A+  DM       + ++   L+  L   G +++      D     G
Sbjct: 190 LHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGG 249

Query: 509 TP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYN-IMIDCCSIIRCFKSAS 564
           TP    YN +++ L +A +   ++ + ++  + GI P+  TY+ ++   C   R  ++  
Sbjct: 250 TPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACR 309

Query: 565 ALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKA 624
            L+ +  R G  P  + Y+ LI  L   G  DEA +L ++++ +G   DV+ Y+T++   
Sbjct: 310 LLLYVKSR-GCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMTGDGCDADVVTYSTLIDGL 368

Query: 625 CEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           C+ GR+D    ++ +M +    P   T + +  G  +    + A+E ++
Sbjct: 369 CKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVE 417


>gi|356541430|ref|XP_003539180.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Glycine max]
          Length = 492

 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 64/291 (21%), Positives = 123/291 (42%), Gaps = 26/291 (8%)

Query: 394 NPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMF 452
           +PK  +       ++ KP RA++ F  M +  L  D+ ++  L  +    N      ++ 
Sbjct: 135 SPKTLAILAERYASIGKPHRAVRTFLSMHEHGLHQDLHSFNTLLDILCKSNRVETAHDLL 194

Query: 453 SQVDSAKRINAIEM---------------------DMARNNIQHSHISMKNLLKALGAEG 491
             + S  R + +                       +M +  I+ + ++   +LK      
Sbjct: 195 RTLKSRFRPDTVSYNILANGYCLKKRTPMALRVLKEMVQRGIEPTMVTYNTMLKGYFRSN 254

Query: 492 MIRELIQYFCD---SKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYN 548
            I+E  +++ +    K  +   +Y TV+H   EA E  +A  +F +M   G+ PN ATYN
Sbjct: 255 QIKEAWEFYLEMKKRKCEIDVVSYTTVIHGFGEAGEVKKAKRVFDEMVKEGVAPNVATYN 314

Query: 549 IMIDCCSIIRCFKSASALVSMMVRDGF-YPQTMTYTALIKILLDYGDFDEALNLLDLVSL 607
            +I         ++A A+   MVR+G   P  +T+  +I+ L   GD + AL  ++ +  
Sbjct: 315 ALIQVFCKKDSVQNAVAVFEEMVREGVCSPNVVTFNVVIRGLCHVGDMERALGFMERMGE 374

Query: 608 EGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
            G+   V  YN +++  C+ G I+    +  +M      P+  T + + S 
Sbjct: 375 HGLRASVQTYNVVIRYFCDAGEIEKGLEVFGKMGDGLCLPNLDTYNVLISA 425


>gi|12324362|gb|AAG52154.1|AC022355_15 unknown protein; 19199-17308 [Arabidopsis thaliana]
          Length = 558

 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 87/400 (21%), Positives = 180/400 (45%), Gaps = 20/400 (5%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           ++  V++   +  +  LA  L+ +M++  ++     ++  I ++   R + + + + K M
Sbjct: 151 TYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEM 210

Query: 355 QQNNLKPQDSTIATL-SVECSKALELDLAEALLDQISRCTNPK--PFSAFLAACDTMDKP 411
           +   ++P   T ++L S  CS     D ++ L D I +  NP    F+A + A     K 
Sbjct: 211 ETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKF 270

Query: 412 ERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
             A K+   M ++ + PDI TY  L + F           M  ++D AK++   E  +++
Sbjct: 271 VEAEKLHDDMIKRSIDPDIFTYNSLINGF----------CMHDRLDKAKQM--FEFMVSK 318

Query: 471 N---NIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHR 527
           +   ++   +  +K   K+   E    EL +          T TY T++  L    +   
Sbjct: 319 DCFPDLDTYNTLIKGFCKSKRVEDGT-ELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDN 377

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A ++FKQM + G+PP+  TY+I++D        + A  +   M +         YT +I+
Sbjct: 378 AQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIE 437

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
            +   G  D+  +L   +SL+G+  +V+ YNT++   C K  +     ++++M ++   P
Sbjct: 438 GMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLP 497

Query: 648 DPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTL 687
           D  T + +   ++  G   ++ E ++ +       + ST+
Sbjct: 498 DSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTI 537



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 82/382 (21%), Positives = 155/382 (40%), Gaps = 20/382 (5%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A  L+ QM  +G +P + T+   I  +         + ++  M Q   +P   T   +  
Sbjct: 98  AVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVN 157

Query: 372 ECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDK---PERAIKIFAKMRQK-LRP 427
              K  ++DLA  LL+++           F    D++ K    + A+ +F +M  K +RP
Sbjct: 158 GLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRP 217

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL 487
           ++ TY  L S   +     +   + S             DM    I  + ++   L+ A 
Sbjct: 218 NVVTYSSLISCLCSYGRWSDASQLLS-------------DMIEKKINPNLVTFNALIDAF 264

Query: 488 GAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNA 544
             EG   E  +   D       P   TYN++++         +A ++F+ M +    P+ 
Sbjct: 265 VKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDL 324

Query: 545 ATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDL 604
            TYN +I      +  +  + L   M   G    T+TYT LI+ L   GD D A  +   
Sbjct: 325 DTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQ 384

Query: 605 VSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGF 664
           +  +G+P D++ Y+ +L   C  G+++    + + M +++++ D      +  G    G 
Sbjct: 385 MVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGK 444

Query: 665 HNSAMEALQVLSMRMLCEEVST 686
            +   +    LS++ +   V T
Sbjct: 445 VDDGWDLFCSLSLKGVKPNVVT 466



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 72/152 (47%), Gaps = 4/152 (2%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           T +++L+     +    A+ +  QM   G  P+  T+  +I    +      A ALV  M
Sbjct: 81  TLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRM 140

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           V+ G  P  +TY  ++  L   GD D A NLL+ +    I  DV+++NTI+   C+   +
Sbjct: 141 VQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHV 200

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNC 662
           D    + ++M    ++P+  T    +S  ++C
Sbjct: 201 DDALNLFKEMETKGIRPNVVT----YSSLISC 228



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 84/460 (18%), Positives = 177/460 (38%), Gaps = 76/460 (16%)

Query: 93  ILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERY 152
           ++N   +  D          ME  +I  +   +  ++ +LCK  ++++A NL   + E  
Sbjct: 155 VVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEM-ETK 213

Query: 153 GIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAV 212
           GI P +  Y+S +           A+  L  M  + +  N VT+  L+   V +      
Sbjct: 214 GIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEA 273

Query: 213 HEIWEDYIKH-YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGR 271
            ++ +D IK      IF+    +  F     L  A +  + MV+                
Sbjct: 274 EKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVS---------------- 317

Query: 272 LRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTY 331
                       +  P +     +++ +I    +++      +L  +M   GL   + TY
Sbjct: 318 -----------KDCFPDLD----TYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTY 362

Query: 332 DGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR 391
              I+ +  D    N  +V K M  + + P    I T S+             LLD +  
Sbjct: 363 TTLIQGLFHDGDCDNAQKVFKQMVSDGVPPD---IMTYSI-------------LLDGL-- 404

Query: 392 CTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGN 450
           C N               K E+A+++F  M++ +++ DI  Y  +           +  +
Sbjct: 405 CNNG--------------KLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWD 450

Query: 451 MFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP 510
           +F  +     +  ++ ++   N   S +  K LL+   A  +++++ +   D   P  + 
Sbjct: 451 LFCSL----SLKGVKPNVVTYNTMISGLCSKRLLQE--AYALLKKMKE---DGPLP-DSG 500

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIM 550
           TYNT++ + +   +   + E+ ++M++C    +A+T  ++
Sbjct: 501 TYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGLV 540


>gi|297807691|ref|XP_002871729.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317566|gb|EFH47988.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 504

 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 75/338 (22%), Positives = 151/338 (44%), Gaps = 20/338 (5%)

Query: 318 QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL-SVECSKA 376
           +M  +G +P+   Y+  I  +   + + N +++L  M+ + ++P   T  +L S  C+  
Sbjct: 176 RMVEMGYEPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTYNSLISGLCNSG 235

Query: 377 LELDLAEALLDQISRCTNPK--PFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYE 433
              D    +     R   P    F+A + AC    +   A +++ +M R+ L PDI TY 
Sbjct: 236 RWDDATRMVSCMTKREIYPDVFTFNALIDACVKEGRISEAEELYEEMIRRSLDPDIVTYS 295

Query: 434 LLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMI 493
           LL  ++G          M+S++D A+++      M         ++   L+        +
Sbjct: 296 LL--IYGLC--------MYSRLDEAEQMFGF---MVSKGCFPDVVTYSILINGYCKSKKV 342

Query: 494 RELIQYFCD---SKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIM 550
              ++ FC+         T TY  ++     A + + A EIFK M  CG+PPN  TYN++
Sbjct: 343 EHGMKLFCEMSQRGVVRNTVTYTVLIQGYCRAGKLNVAEEIFKWMVFCGVPPNIITYNVL 402

Query: 551 IDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGI 610
           +         + A  +++ M + G     +TY  +I+ +   G+  +A +L   ++L+G+
Sbjct: 403 LHGLCDNGKIEKALVILADMQKSGMDADIVTYNIIIRGMCKAGEVADAWDLYCSLNLKGL 462

Query: 611 PHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
             D+  Y  ++    +KG     + +  +M ++ + P+
Sbjct: 463 TPDIWTYTAMMLGLYKKGLRGEADALFRKMKEDGILPN 500



 Score = 70.1 bits (170), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 72/148 (48%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           T+ ++L+        + A+ +F +M   G  PN   YN +ID     +   +A  L++ M
Sbjct: 153 TFGSLLNGFCRGDRIYDALYMFDRMVEMGYEPNVVIYNTIIDGLCKSKQVDNALDLLNRM 212

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
             DG  P  +TY +LI  L + G +D+A  ++  ++   I  DV  +N ++    ++GRI
Sbjct: 213 EVDGIRPDAVTYNSLISGLCNSGRWDDATRMVSCMTKREIYPDVFTFNALIDACVKEGRI 272

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
              E + E+M +  + PD  T   +  G
Sbjct: 273 SEAEELYEEMIRRSLDPDIVTYSLLIYG 300



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 84/398 (21%), Positives = 157/398 (39%), Gaps = 20/398 (5%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           FS ++ A  + +   +   L  QMQ LG+  +  T +  +        L   +  L  M 
Sbjct: 84  FSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSFLGKMM 143

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPER-- 413
           +   +P   T  +L     +   +  A  + D++           +    D + K ++  
Sbjct: 144 KLGHEPDIVTFGSLLNGFCRGDRIYDALYMFDRMVEMGYEPNVVIYNTIIDGLCKSKQVD 203

Query: 414 -AIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471
            A+ +  +M    +RPD  TY  L S  G  N+         + D A R+ +    M + 
Sbjct: 204 NALDLLNRMEVDGIRPDAVTYNSLIS--GLCNS--------GRWDDATRMVSC---MTKR 250

Query: 472 NIQHSHISMKNLLKALGAEGMI---RELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRA 528
            I     +   L+ A   EG I    EL +            TY+ +++ L        A
Sbjct: 251 EIYPDVFTFNALIDACVKEGRISEAEELYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEA 310

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
            ++F  M + G  P+  TY+I+I+     +  +    L   M + G    T+TYT LI+ 
Sbjct: 311 EQMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTVLIQG 370

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
               G  + A  +   +   G+P +++ YN +L   C+ G+I+    I+  M ++ +  D
Sbjct: 371 YCRAGKLNVAEEIFKWMVFCGVPPNIITYNVLLHGLCDNGKIEKALVILADMQKSGMDAD 430

Query: 649 PSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
             T + +  G    G    A +    L+++ L  ++ T
Sbjct: 431 IVTYNIIIRGMCKAGEVADAWDLYCSLNLKGLTPDIWT 468



 Score = 39.7 bits (91), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 45/209 (21%), Positives = 83/209 (39%), Gaps = 13/209 (6%)

Query: 10  FQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCR-GER 68
           +  I D  CKSK        V N L+L   +    G+  +++   T   ++  LC  G  
Sbjct: 189 YNTIIDGLCKSK-------QVDNALDLLNRMEVD-GIRPDAV---TYNSLISGLCNSGRW 237

Query: 69  SRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLM 128
             A+ ++  +           F  +++ C +        E +  M  + +  +   Y L+
Sbjct: 238 DDATRMVSCMTKREIYPDVFTFNALIDACVKEGRISEAEELYEEMIRRSLDPDIVTYSLL 297

Query: 129 MQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRM 188
           +  LC    L+EA  +  F+  + G +P +  Y+  +    K   + H       M  R 
Sbjct: 298 IYGLCMYSRLDEAEQMFGFMVSK-GCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRG 356

Query: 189 VGKNEVTYTELLKLAVWQKNLSAVHEIWE 217
           V +N VTYT L++       L+   EI++
Sbjct: 357 VVRNTVTYTVLIQGYCRAGKLNVAEEIFK 385


>gi|357466003|ref|XP_003603286.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492334|gb|AES73537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1246

 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 97/424 (22%), Positives = 178/424 (41%), Gaps = 41/424 (9%)

Query: 287 PVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRN 346
           P MK    ++S ++ A GR  ++     L+ +M+S+GL+P+ +TY   IRA+   R + +
Sbjct: 233 PSMK----TYSALMVALGRRGDTRKIMNLLEEMKSIGLRPNIYTYTICIRALGRARRIDD 288

Query: 347 GMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACD 406
              + K M      P   T   L      A +LD A+ L  ++   ++      ++   D
Sbjct: 289 AWGIFKEMDDEGCGPDVITYTVLIDALCAAGKLDKAKELYVKMRASSHSPDRVTYITLMD 348

Query: 407 TMDKP---ERAIKIFAKMR-QKLRPDIRTYELLFSLF---GNVNAPYE------------ 447
              K    E   + + +M      PD+ TY +L       G+V+  ++            
Sbjct: 349 KFGKVGDLETVKRFWNEMEVDGYAPDVVTYTILIEALCKSGDVDRAFDMLDVMTTKGIFP 408

Query: 448 ----EGNMFSQVDSAKRIN-AIEM--DMARNNIQHSHISMKNLLKALGAEGMIRELIQYF 500
                  M   +  A+R++ A+E+  +M    ++ +  S    +   G  G   + I  F
Sbjct: 409 NLHTYNTMICGLLKARRLDEALELLENMESLGVKPTAFSYVLFIDYYGKSGDPAKAIDTF 468

Query: 501 CDSKTPLGTPTY---NTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSII 557
              K     P+    N  L++L E      A +IF  +  CG+ P++ TYN+++ C S  
Sbjct: 469 ETMKKRGIMPSIAACNASLYTLAETGRISEAEDIFNDLHKCGLSPDSVTYNMLMKCYSKA 528

Query: 558 RCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLY 617
                A+ L+S M+  G  P  M   +LI  L   G  D A  +   +    +   V+ Y
Sbjct: 529 GQIDKATQLLSEMISKGCEPDVMIINSLINTLYKAGRVDAAWKMFGRLKNLKLAPTVVTY 588

Query: 618 NTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSM 677
           N +L    ++G+I     +   M ++   P+  T    F+  ++C   N A++    L++
Sbjct: 589 NILLTGLGKEGKILKALELFGSMTESGCPPNTIT----FNSLLDCLSKNDAVD----LAL 640

Query: 678 RMLC 681
           +M C
Sbjct: 641 KMFC 644



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 62/276 (22%), Positives = 123/276 (44%), Gaps = 17/276 (6%)

Query: 414 AIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNN 472
           A+K++ +M  + ++P ++TY  L    G      +  N+  ++ S            R N
Sbjct: 219 ALKVYKRMISEGMKPSMKTYSALMVALGRRGDTRKIMNLLEEMKSIG---------LRPN 269

Query: 473 IQHSHISMKNLLKAL---GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAM 529
           I    I ++ L +A     A G+ +E+    C         TY  ++ +L  A +  +A 
Sbjct: 270 IYTYTICIRALGRARRIDDAWGIFKEMDDEGCGPDVI----TYTVLIDALCAAGKLDKAK 325

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
           E++ +M+     P+  TY  ++D    +   ++     + M  DG+ P  +TYT LI+ L
Sbjct: 326 ELYVKMRASSHSPDRVTYITLMDKFGKVGDLETVKRFWNEMEVDGYAPDVVTYTILIEAL 385

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649
              GD D A ++LD+++ +GI  ++  YNT++    +  R+D    ++E M    V+P  
Sbjct: 386 CKSGDVDRAFDMLDVMTTKGIFPNLHTYNTMICGLLKARRLDEALELLENMESLGVKPTA 445

Query: 650 STCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVS 685
            +       Y   G    A++  + +  R +   ++
Sbjct: 446 FSYVLFIDYYGKSGDPAKAIDTFETMKKRGIMPSIA 481



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 126/615 (20%), Positives = 237/615 (38%), Gaps = 77/615 (12%)

Query: 54  ATQMQIVDALC-RGERSRASHLLLNLGHAHHSLGA---DDFFHIL--NYCARSPDPLFVM 107
            T M I  AL  +G   RA   L  +      L A   +   H+L   +C  +      +
Sbjct: 167 TTYMTIFKALSIKGGIGRAPFALRKMTEVGFILNAYSYNGLIHLLLPGFCNEA------L 220

Query: 108 ETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGA 167
           + ++ M  + +  + K Y  +M AL + G   +  NL+  + +  G+ P +  Y   + A
Sbjct: 221 KVYKRMISEGMKPSMKTYSALMVALGRRGDTRKIMNLLEEM-KSIGLRPNIYTYTICIRA 279

Query: 168 CAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSI 227
             +   +  A      MD    G + +TYT L+        L    E++           
Sbjct: 280 LGRARRIDDAWGIFKEMDDEGCGPDVITYTVLIDALCAAGKLDKAKELY----------- 328

Query: 228 FSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALP 287
                      ++R    + + + ++  +   GK+    T +       +D   P     
Sbjct: 329 ----------VKMRASSHSPDRVTYITLMDKFGKVGDLETVKRFWNEMEVDGYAP----- 373

Query: 288 VMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNG 347
              V+ ++   +I A  ++ +   A  ++  M + G+ P+ HTY+  I  ++  R L   
Sbjct: 374 --DVVTYTI--LIEALCKSGDVDRAFDMLDVMTTKGIFPNLHTYNTMICGLLKARRLDEA 429

Query: 348 MEVLKIMQQNNLKPQDSTIATL------SVECSKAL---ELDLAEALLDQISRCTNPKPF 398
           +E+L+ M+   +KP   +          S + +KA+   E      ++  I+ C      
Sbjct: 430 LELLENMESLGVKPTAFSYVLFIDYYGKSGDPAKAIDTFETMKKRGIMPSIAAC------ 483

Query: 399 SAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDS 457
           +A L       +   A  IF  + +  L PD  TY +L   +              Q+D 
Sbjct: 484 NASLYTLAETGRISEAEDIFNDLHKCGLSPDSVTYNMLMKCYSKA----------GQIDK 533

Query: 458 AKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPT---YNT 514
           A ++ +   +M     +   + + +L+  L   G +    + F   K     PT   YN 
Sbjct: 534 ATQLLS---EMISKGCEPDVMIINSLINTLYKAGRVDAAWKMFGRLKNLKLAPTVVTYNI 590

Query: 515 VLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDG 574
           +L  L +  +  +A+E+F  M   G PPN  T+N ++DC S       A  +   M    
Sbjct: 591 LLTGLGKEGKILKALELFGSMTESGCPPNTITFNSLLDCLSKNDAVDLALKMFCRMTMMN 650

Query: 575 FYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI-DVI 633
             P  +TY  +I  L+  G  D A      +  + +  D +   T++      GR+ D I
Sbjct: 651 CNPDVLTYNTIIYGLIREGRIDYAFWFFHQMK-KFLSPDYVTLCTLIPGVVRHGRVEDAI 709

Query: 634 EFIIEQMHQNKVQPD 648
           + ++E +HQ  +Q +
Sbjct: 710 KVVMEFVHQACLQTN 724



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 130/643 (20%), Positives = 251/643 (39%), Gaps = 97/643 (15%)

Query: 87   ADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIY 146
            A+D F+ L+ C  SPD +    T+ M+         KCY        K G +++A+ L+ 
Sbjct: 499  AEDIFNDLHKCGLSPDSV----TYNMLM--------KCY-------SKAGQIDKATQLLS 539

Query: 147  FLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQ 206
             +  + G  P + + NS +    K   +  A      + +  +    VTY  LL     +
Sbjct: 540  EMISK-GCEPDVMIINSLINTLYKAGRVDAAWKMFGRLKNLKLAPTVVTYNILLTGLGKE 598

Query: 207  KNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYET----LQHMVALAMMG-- 260
              +    E++       S++         +F  L D  S  +     L+    + MM   
Sbjct: 599  GKILKALELFG------SMTESGCPPNTITFNSLLDCLSKNDAVDLALKMFCRMTMMNCN 652

Query: 261  --KLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHAC---------GRTQNS 309
               L  N    G +R  R+D           ++ ++   D +  C         GR +++
Sbjct: 653  PDVLTYNTIIYGLIREGRIDYAFWF----FHQMKKFLSPDYVTLCTLIPGVVRHGRVEDA 708

Query: 310  GLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL 369
               + +M  +    LQ +S  +   +  I+++  +   +   +I+  N++   D  +  L
Sbjct: 709  --IKVVMEFVHQACLQTNSQFWGELMECILTEAEIEEAISFAEILVCNSVCQDDHVMLPL 766

Query: 370  -SVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDKPERAIKIFAKMRQK 424
              V C +   LD A+ + D+ ++     P    ++  +      +  E+A+++F  M+  
Sbjct: 767  IKVLCKRKKALD-AQNVFDKFTKNLGIHPTLESYNCLMDGLLGSNFTEKALELFEDMKSA 825

Query: 425  -LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDS-AKRINAIEMDMARNNIQHSHISMKN 482
               P+  TY LL    G      +  +++S++ S     NAI      N I  + +   N
Sbjct: 826  GTHPNNFTYNLLLDAHGKSKRINKLYDLYSEMRSRGCEPNAI----THNIIISALVKSNN 881

Query: 483  LLKALG--------------------AEGMIR------------ELIQYFCDSKTPLGTP 510
            L KAL                      +G+++            E++ Y C   + +   
Sbjct: 882  LNKALDLYYELMSGDFSPTPCTYGPLIDGLLKAGRSEQAMKIFEEMLDYGCGPNSVI--- 938

Query: 511  TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
             YN +++   ++ E   A E+FK+M   GI P+  +Y I+++C  I      A      +
Sbjct: 939  -YNILINGFGKSGEIDFACELFKKMVKEGIRPDLKSYTILVECLCITGRIDEAVQYFEEL 997

Query: 571  VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
               G  P T++Y  +I  L      DEAL+L   +   GI  D+  YN ++      G++
Sbjct: 998  KLTGLDPDTVSYNFIINGLGKSRRLDEALSLFSEMKNRGISPDLYTYNALILHLGIAGKV 1057

Query: 631  DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
            DV   + E++    ++P   T + +  G+   G  + A    +
Sbjct: 1058 DVAVKMYEELQLVGLEPSVFTYNALIRGHSLSGNKDQAFSVFK 1100



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 101/242 (41%), Gaps = 20/242 (8%)

Query: 483 LLKALGAEGMIRELIQYFCDSKTPL-----------GTPTYNTVLHSLVEAQESHRAMEI 531
           +L A    G+I  L+  FC+    +              TY+ ++ +L    ++ + M +
Sbjct: 198 ILNAYSYNGLIHLLLPGFCNEALKVYKRMISEGMKPSMKTYSALMVALGRRGDTRKIMNL 257

Query: 532 FKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLD 591
            ++MK+ G+ PN  TY I I      R    A  +   M  +G  P  +TYT LI  L  
Sbjct: 258 LEEMKSIGLRPNIYTYTICIRALGRARRIDDAWGIFKEMDDEGCGPDVITYTVLIDALCA 317

Query: 592 YGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
            G  D+A  L   +       D + Y T++ K  + G ++ ++    +M  +   PD  T
Sbjct: 318 AGKLDKAKELYVKMRASSHSPDRVTYITLMDKFGKVGDLETVKRFWNEMEVDGYAPDVVT 377

Query: 652 CHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST--------LEEKRSDFEDLILAEDS 703
              +       G  + A + L V++ + +   + T        L+ +R D E L L E+ 
Sbjct: 378 YTILIEALCKSGDVDRAFDMLDVMTTKGIFPNLHTYNTMICGLLKARRLD-EALELLENM 436

Query: 704 EA 705
           E+
Sbjct: 437 ES 438



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 73/359 (20%), Positives = 132/359 (36%), Gaps = 78/359 (21%)

Query: 294  WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
            ++++ ++ A G+++       L  +M+S G +P++ T++  I A+V    L   +++   
Sbjct: 832  FTYNLLLDAHGKSKRINKLYDLYSEMRSRGCEPNAITHNIIISALVKSNNLNKALDLYYE 891

Query: 354  MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPER 413
            +   +  P                            + CT        L A     + E+
Sbjct: 892  LMSGDFSP----------------------------TPCTYGPLIDGLLKA----GRSEQ 919

Query: 414  AIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNN 472
            A+KIF +M      P+   Y +L + FG             ++D A  +      M +  
Sbjct: 920  AMKIFEEMLDYGCGPNSVIYNILINGFGKS----------GEIDFACELFK---KMVKEG 966

Query: 473  IQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIF 532
            I+    S   L++ L   G I E +QYF                                
Sbjct: 967  IRPDLKSYTILVECLCITGRIDEAVQYF-------------------------------- 994

Query: 533  KQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDY 592
            +++K  G+ P+  +YN +I+     R    A +L S M   G  P   TY ALI  L   
Sbjct: 995  EELKLTGLDPDTVSYNFIINGLGKSRRLDEALSLFSEMKNRGISPDLYTYNALILHLGIA 1054

Query: 593  GDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
            G  D A+ + + + L G+   V  YN +++     G  D    + ++M      P+  T
Sbjct: 1055 GKVDVAVKMYEELQLVGLEPSVFTYNALIRGHSLSGNKDQAFSVFKKMMVVGCSPNTET 1113


>gi|115445449|ref|NP_001046504.1| Os02g0266200 [Oryza sativa Japonica Group]
 gi|50251963|dbj|BAD27898.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536035|dbj|BAF08418.1| Os02g0266200 [Oryza sativa Japonica Group]
 gi|125581581|gb|EAZ22512.1| hypothetical protein OsJ_06176 [Oryza sativa Japonica Group]
 gi|215704610|dbj|BAG94238.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215737116|dbj|BAG96045.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 632

 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 97/432 (22%), Positives = 169/432 (39%), Gaps = 61/432 (14%)

Query: 287 PVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRN 346
           P+  V     S VI   G  +  G A  +  Q+++   QP++  Y+  I  ++ +     
Sbjct: 153 PICVVTPMELSQVIRMLGNAKMIGKAITIFYQIKARKCQPTAQAYNSMIIMLIHEGQYEK 212

Query: 347 GMEVLKIM-QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRC---TNPKPFSAFL 402
             E+   M  + +  P   T + L     K    D A  LL+++         K ++  +
Sbjct: 213 VHELYNEMSNEGHCHPDTVTYSALISAFCKLGRQDSAIRLLNEMKENGMQPTAKIYTMII 272

Query: 403 AACDTMDKPERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI 461
           +    +D    A+ +F +MR    RPD+ TY  L    G             ++D A   
Sbjct: 273 SLFFKLDNVHGALSLFEEMRYMYCRPDVFTYTELIRGLGKA----------GRIDEAYHF 322

Query: 462 NAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHS 518
                +M R + +   + M N++  LG  G + + ++ F +       P   TYNT++ +
Sbjct: 323 YH---EMQREDCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKA 379

Query: 519 LVEAQESHRAMEIF---KQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGF 575
           L E++   R  E+F   ++MK  GI P+  TY+I+ID        + A  L+  M   GF
Sbjct: 380 LFESKS--RVSEVFSWFERMKGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGF 437

Query: 576 YP-----------------------------------QTMTYTALIKILLDYGDFDEALN 600
            P                                       Y  +IK L   G  D+A+N
Sbjct: 438 PPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAIN 497

Query: 601 LLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYV 660
           L D +S  G   +V  YN ++        +D     + +M ++   PD ++ + + +G  
Sbjct: 498 LFDEMSKLGCTPNVYAYNALMSGLARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLA 557

Query: 661 NCGFHNSAMEAL 672
             G  + AME L
Sbjct: 558 KTGGPHRAMEML 569



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 58/269 (21%), Positives = 117/269 (43%), Gaps = 15/269 (5%)

Query: 326 PSSHTYDGFIRAIVSDRG-LRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEA 384
           P+  TY+  I+A+   +  +       + M+ + + P   T + L     K   ++ A  
Sbjct: 368 PNVVTYNTIIKALFESKSRVSEVFSWFERMKGSGISPSPFTYSILIDGFCKTNRIEKAMM 427

Query: 385 LLDQISRCTNPKPFSAFLAACDTMDKPER---AIKIFAKMRQKL-RPDIRTYELLFSLFG 440
           LL+++     P   +A+ +  D + K +R   A ++F ++++       R Y ++    G
Sbjct: 428 LLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLG 487

Query: 441 NVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYF 500
                 +  N+F   D   ++       A N +         L +AL     +R++ ++ 
Sbjct: 488 KAGRLDDAINLF---DEMSKLGCTPNVYAYNALMSGLARACMLDEALTT---MRKMQEHG 541

Query: 501 CDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCF 560
           C         +YN +L+ L +    HRAME+   MK   I P+A +YN ++   S    F
Sbjct: 542 CLPDIN----SYNIILNGLAKTGGPHRAMEMLTNMKNSTIKPDAVSYNTVLSALSHAGMF 597

Query: 561 KSASALVSMMVRDGFYPQTMTYTALIKIL 589
           + A+ L+  M   GF    +TY+++++ +
Sbjct: 598 EEAAELMKEMNALGFEYDLITYSSILEAI 626



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 84/391 (21%), Positives = 152/391 (38%), Gaps = 29/391 (7%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           ++S +I A  +      A +L+ +M+  G+QP++  Y   I        +   + + + M
Sbjct: 232 TYSALISAFCKLGRQDSAIRLLNEMKENGMQPTAKIYTMIISLFFKLDNVHGALSLFEEM 291

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSA-------FLAACDT 407
           +    +P   T   L     KA  +D A     ++ R  + KP +        FL     
Sbjct: 292 RYMYCRPDVFTYTELIRGLGKAGRIDEAYHFYHEMQR-EDCKPDTVVMNNMINFLGKAGR 350

Query: 408 MDKPERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM 466
           +D     +K+F +M      P++ TY  +      + A +E  +  S+V S         
Sbjct: 351 LDD---GLKLFEEMGVSHCIPNVVTYNTI------IKALFESKSRVSEVFSWFE------ 395

Query: 467 DMARNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQ 523
            M  + I  S  +   L+        I +   L++   +   P     Y +++ +L +A+
Sbjct: 396 RMKGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAK 455

Query: 524 ESHRAMEIFKQMK-TCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTY 582
               A E+F+++K  CG   +A  Y +MI           A  L   M + G  P    Y
Sbjct: 456 RYDLACELFQELKENCG-SSSARVYAVMIKHLGKAGRLDDAINLFDEMSKLGCTPNVYAY 514

Query: 583 TALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642
            AL+  L      DEAL  +  +   G   D+  YN IL    + G       ++  M  
Sbjct: 515 NALMSGLARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKTGGPHRAMEMLTNMKN 574

Query: 643 NKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           + ++PD  + + V S   + G    A E ++
Sbjct: 575 STIKPDAVSYNTVLSALSHAGMFEEAAELMK 605



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 83/389 (21%), Positives = 156/389 (40%), Gaps = 16/389 (4%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y  ++ A CK G  + A  L+  + E  G+ P   +Y   +    KL + VH  L L   
Sbjct: 233 YSALISAFCKLGRQDSAIRLLNEMKEN-GMQPTAKIYTMIISLFFKLDN-VHGALSLFEE 290

Query: 185 DSRMVGKNEV-TYTELL----KLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTR 239
              M  + +V TYTEL+    K     +     HE+  +  K  ++ + ++  F+    R
Sbjct: 291 MRYMYCRPDVFTYTELIRGLGKAGRIDEAYHFYHEMQREDCKPDTVVMNNMINFLGKAGR 350

Query: 240 LRDLKSAYETL--QHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFS 297
           L D    +E +   H +   +     I    E + R S +           +    +++S
Sbjct: 351 LDDGLKLFEEMGVSHCIPNVVTYNTIIKALFESKSRVSEVFSWFERMKGSGISPSPFTYS 410

Query: 298 DVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQN 357
            +I    +T     A  L+ +M   G  P    Y   I A+   +      E+ + +++N
Sbjct: 411 ILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKEN 470

Query: 358 NLKPQDSTIATLSVECSKALELDLAEALLDQISR--CT-NPKPFSAFLAACDTMDKPERA 414
                    A +     KA  LD A  L D++S+  CT N   ++A ++        + A
Sbjct: 471 CGSSSARVYAVMIKHLGKAGRLDDAINLFDEMSKLGCTPNVYAYNALMSGLARACMLDEA 530

Query: 415 IKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQV-DSAKRINAIEMDMARNN 472
           +    KM++    PDI +Y ++ +       P+    M + + +S  + +A+  +   + 
Sbjct: 531 LTTMRKMQEHGCLPDINSYNIILNGLAKTGGPHRAMEMLTNMKNSTIKPDAVSYNTVLSA 590

Query: 473 IQHSHI--SMKNLLKALGAEGMIRELIQY 499
           + H+ +      L+K + A G   +LI Y
Sbjct: 591 LSHAGMFEEAAELMKEMNALGFEYDLITY 619


>gi|225439731|ref|XP_002272943.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic [Vitis vinifera]
          Length = 772

 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 92/394 (23%), Positives = 169/394 (42%), Gaps = 30/394 (7%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +F+ +I A  R      A  +M +M S GL P   T+   ++  + +  +   + + + M
Sbjct: 213 TFNILIKALCRAHQIRPAILMMEEMGSYGLSPDEKTFTTLMQGFIEEGNMNGALRIREQM 272

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDK 410
                   + T+  L     K   ++   + +D++S     +P    F++ +     +  
Sbjct: 273 VAAGCPSSNVTVNVLVHGYCKEGRIEEVLSFIDEMSN-EGFRPDRFTFNSLVNGLCRIGH 331

Query: 411 PERAIKIFAKMRQK-LRPDIRTY-ELLFSL--FGNVNAPYEEGNMFSQVDSAKRINAIEM 466
            + A++I   M Q+   PDI TY  L+F L   G V    E  N             I  
Sbjct: 332 VKHALEILDVMLQEGFDPDIFTYNSLIFGLCKLGEVEEAVEILNQM-----------ILR 380

Query: 467 DMARNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQ 523
           D + N + ++      L+  L  E  + E   L +            T+N+++  L    
Sbjct: 381 DFSPNTVTYN-----TLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTN 435

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDC-CSIIRCFKSASALVSMMVRDGFYPQTMTY 582
               AME+F++MKT G  P+  TYN++ID  CS  R  + A +L+  M   G     +TY
Sbjct: 436 NHRLAMELFEEMKTKGCHPDEFTYNMLIDSLCSRGR-LEEALSLLKEMESSGCSRNVVTY 494

Query: 583 TALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642
             LI         +EA  + D + L+GI  +V+ YNT++   C+  R++    +++QM  
Sbjct: 495 NTLIDGFCKNKRIEEAEEIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLM 554

Query: 643 NKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
             ++PD  T + + + +   G    A + +Q ++
Sbjct: 555 EGLKPDKFTYNSLLTYFCRAGDIKKAADIVQTMT 588



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 109/544 (20%), Positives = 217/544 (39%), Gaps = 70/544 (12%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLC--LD 182
           +L+++++  K    +EA  ++  + E +G+      YN FL     L+ +V  N    ++
Sbjct: 143 FLILIESYAKFELFDEAVAVVDIMEEEFGLKLDAFTYN-FL-----LNVLVDGNKLKLVE 196

Query: 183 LMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLR- 241
           +++SRMV +      ++    +  K L   H+I    +    +  + L     +FT L  
Sbjct: 197 IVNSRMVSRG--IKPDVTTFNILIKALCRAHQIRPAILMMEEMGSYGLSPDEKTFTTLMQ 254

Query: 242 ------DLKSAYETLQHMVALAM-MGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRW 294
                 ++  A    + MVA       + +N    G  +  R++           +VL  
Sbjct: 255 GFIEEGNMNGALRIREQMVAAGCPSSNVTVNVLVHGYCKEGRIE-----------EVL-- 301

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           SF D                   +M + G +P   T++  +  +     +++ +E+L +M
Sbjct: 302 SFID-------------------EMSNEGFRPDRFTFNSLVNGLCRIGHVKHALEILDVM 342

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPKP--FSAFLAACDTMDKP 411
            Q    P   T  +L     K  E++ A  +L+Q I R  +P    ++  ++     ++ 
Sbjct: 343 LQEGFDPDIFTYNSLIFGLCKLGEVEEAVEILNQMILRDFSPNTVTYNTLISTLCKENQV 402

Query: 412 ERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           E A ++   +  K + PD+ T+  L       N       +F +             M  
Sbjct: 403 EEATELARVLTSKGILPDVCTFNSLIQGLCLTNNHRLAMELFEE-------------MKT 449

Query: 471 NNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHR 527
                   +   L+ +L + G + E   L++    S       TYNT++    + +    
Sbjct: 450 KGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLIDGFCKNKRIEE 509

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A EIF +M+  GI  N  TYN +ID     R  + A+ L+  M+ +G  P   TY +L+ 
Sbjct: 510 AEEIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGLKPDKFTYNSLLT 569

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
                GD  +A +++  ++  G   D + Y T++    + GR+++   ++  +    +  
Sbjct: 570 YFCRAGDIKKAADIVQTMTSNGCEPDSVTYGTLILGLSKAGRVELASRLLRTVQLKGMVL 629

Query: 648 DPST 651
            P T
Sbjct: 630 APQT 633



 Score = 79.3 bits (194), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 115/567 (20%), Positives = 220/567 (38%), Gaps = 67/567 (11%)

Query: 112 MMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERY---GIYPILPVYNSFLGAC 168
           M EE  + L+   Y  ++  L  G  L+    L+  +  R    GI P +  +N  + A 
Sbjct: 166 MEEEFGLKLDAFTYNFLLNVLVDGNKLK----LVEIVNSRMVSRGIKPDVTTFNILIKAL 221

Query: 169 AKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSI- 227
            + H +  A L ++ M S  +  +E T+T L++  + + N++    I E  +     S  
Sbjct: 222 CRAHQIRPAILMMEEMGSYGLSPDEKTFTTLMQGFIEEGNMNGALRIREQMVAAGCPSSN 281

Query: 228 FSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALP 287
            ++   V  + +   ++     +  M             ++EG                 
Sbjct: 282 VTVNVLVHGYCKEGRIEEVLSFIDEM-------------SNEG----------------- 311

Query: 288 VMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNG 347
             +  R++F+ +++   R  +   A +++  M   G  P   TY+  I  +     +   
Sbjct: 312 -FRPDRFTFNSLVNGLCRIGHVKHALEILDVMLQEGFDPDIFTYNSLIFGLCKLGEVEEA 370

Query: 348 MEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR-------CTNPKPFSA 400
           +E+L  M   +  P   T  TL     K  +++ A  L   ++        CT    F++
Sbjct: 371 VEILNQMILRDFSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCT----FNS 426

Query: 401 FLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAK 459
            +      +    A+++F +M+ K   PD  TY +L     +     E  ++  +++S+ 
Sbjct: 427 LIQGLCLTNNHRLAMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESS- 485

Query: 460 RINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSK---TPLGTPTYNTVL 516
                    +RN + ++      L+        I E  + F + +         TYNT++
Sbjct: 486 -------GCSRNVVTYN-----TLIDGFCKNKRIEEAEEIFDEMELQGISRNVVTYNTLI 533

Query: 517 HSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFY 576
             L + +    A ++  QM   G+ P+  TYN ++         K A+ +V  M  +G  
Sbjct: 534 DGLCKNRRVEEAAQLMDQMLMEGLKPDKFTYNSLLTYFCRAGDIKKAADIVQTMTSNGCE 593

Query: 577 PQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFI 636
           P ++TY  LI  L   G  + A  LL  V L+G+      YN ++K    + R      +
Sbjct: 594 PDSVTYGTLILGLSKAGRVELASRLLRTVQLKGMVLAPQTYNPVIKALFREKRTSEAVRL 653

Query: 637 IEQMHQNKVQPDPSTCHFVFSGYVNCG 663
             +M +    PD  T   VF G  + G
Sbjct: 654 FREMMEKGDPPDAVTYKVVFRGLCSGG 680



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 80/165 (48%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TYN +L+ LV+  +      +  +M + GI P+  T+NI+I         + A  ++  M
Sbjct: 178 TYNFLLNVLVDGNKLKLVEIVNSRMVSRGIKPDVTTFNILIKALCRAHQIRPAILMMEEM 237

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
              G  P   T+T L++  ++ G+ + AL + + +   G P   +  N ++   C++GRI
Sbjct: 238 GSYGLSPDEKTFTTLMQGFIEEGNMNGALRIREQMVAAGCPSSNVTVNVLVHGYCKEGRI 297

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
           + +   I++M     +PD  T + + +G    G    A+E L V+
Sbjct: 298 EEVLSFIDEMSNEGFRPDRFTFNSLVNGLCRIGHVKHALEILDVM 342



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/241 (22%), Positives = 101/241 (41%), Gaps = 3/241 (1%)

Query: 450 NMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGT 509
           N+    +  K +  +   M    I+    +   L+KAL     IR  I    +  +   +
Sbjct: 184 NVLVDGNKLKLVEIVNSRMVSRGIKPDVTTFNILIKALCRAHQIRPAILMMEEMGSYGLS 243

Query: 510 P---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASAL 566
           P   T+ T++   +E    + A+ I +QM   G P +  T N+++         +   + 
Sbjct: 244 PDEKTFTTLMQGFIEEGNMNGALRIREQMVAAGCPSSNVTVNVLVHGYCKEGRIEEVLSF 303

Query: 567 VSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE 626
           +  M  +GF P   T+ +L+  L   G    AL +LD++  EG   D+  YN+++   C+
Sbjct: 304 IDEMSNEGFRPDRFTFNSLVNGLCRIGHVKHALEILDVMLQEGFDPDIFTYNSLIFGLCK 363

Query: 627 KGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
            G ++    I+ QM      P+  T + + S          A E  +VL+ + +  +V T
Sbjct: 364 LGEVEEAVEILNQMILRDFSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCT 423

Query: 687 L 687
            
Sbjct: 424 F 424



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 83/407 (20%), Positives = 153/407 (37%), Gaps = 56/407 (13%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           + +V+   G+  + G   +++ +M+  G +    T+   I +          + V+ IM+
Sbjct: 108 YEEVLRKLGKDGSFGSMRRVLQEMKHTGCEIRRGTFLILIESYAKFELFDEAVAVVDIME 167

Query: 356 QN-NLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPK--PFSAFLAACDTMDKP 411
           +   LK    T   L        +L L E +  + +SR   P    F+  + A     + 
Sbjct: 168 EEFGLKLDAFTYNFLLNVLVDGNKLKLVEIVNSRMVSRGIKPDVTTFNILIKALCRAHQI 227

Query: 412 ERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
             AI +  +M    L PD +T+  L   F       EEGNM    + A RI      M  
Sbjct: 228 RPAILMMEEMGSYGLSPDEKTFTTLMQGF------IEEGNM----NGALRIRE---QMVA 274

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP-------------------- 510
                S++++  L+     EG I E++ +  +       P                    
Sbjct: 275 AGCPSSNVTVNVLVHGYCKEGRIEEVLSFIDEMSNEGFRPDRFTFNSLVNGLCRIGHVKH 334

Query: 511 ------------------TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID 552
                             TYN+++  L +  E   A+EI  QM      PN  TYN +I 
Sbjct: 335 ALEILDVMLQEGFDPDIFTYNSLIFGLCKLGEVEEAVEILNQMILRDFSPNTVTYNTLIS 394

Query: 553 CCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPH 612
                   + A+ L  ++   G  P   T+ +LI+ L    +   A+ L + +  +G   
Sbjct: 395 TLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTNNHRLAMELFEEMKTKGCHP 454

Query: 613 DVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
           D   YN ++   C +GR++    ++++M  +    +  T + +  G+
Sbjct: 455 DEFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLIDGF 501



 Score = 55.8 bits (133), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 67/304 (22%), Positives = 124/304 (40%), Gaps = 16/304 (5%)

Query: 105 FVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSF 164
             ME +  M+ K    +   Y +++ +LC  G LEEA +L+  + E  G    +  YN+ 
Sbjct: 439 LAMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEM-ESSGCSRNVVTYNTL 497

Query: 165 LGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHY 223
           +    K   +  A    D M+ + + +N VTY  L+      + +    ++ +  + +  
Sbjct: 498 IDGFCKNKRIEEAEEIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGL 557

Query: 224 SLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA------LAMMGKLYINRTSEGRLR-SSR 276
               F+    +  F R  D+K A + +Q M +          G L +  +  GR+  +SR
Sbjct: 558 KPDKFTYNSLLTYFCRAGDIKKAADIVQTMTSNGCEPDSVTYGTLILGLSKAGRVELASR 617

Query: 277 LDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIR 336
           L   + L     M +   +++ VI A  R + +  A +L  +M   G  P + TY    R
Sbjct: 618 LLRTVQLKG---MVLAPQTYNPVIKALFREKRTSEAVRLFREMMEKGDPPDAVTYKVVFR 674

Query: 337 AIVSDRG-LRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNP 395
            + S  G +   ++ L  M      P  S+   L+        L + + L+  ++R    
Sbjct: 675 GLCSGGGPIGEAVDFLVEMTDKGFLPDFSSFLMLA---EGLCALSMEDTLIKLVNRVMKQ 731

Query: 396 KPFS 399
             FS
Sbjct: 732 ANFS 735


>gi|225437600|ref|XP_002271180.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic [Vitis vinifera]
          Length = 867

 Score = 90.5 bits (223), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 118/280 (42%), Gaps = 16/280 (5%)

Query: 398 FSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVD 456
           FSA ++A       + AIK+F  M+   L+P++ TY  +    G     +          
Sbjct: 223 FSALISAYGRSGYCDEAIKVFETMKSSGLKPNLVTYNAVIDACGKGGVDF---------- 272

Query: 457 SAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGM---IRELIQYFCDSKTPLGTPTYN 513
              R   I  +M RN +Q   I+  +LL   G  G+    R L              TYN
Sbjct: 273 --NRAAEIFDEMLRNGVQPDRITFNSLLAVCGRGGLWEAARNLFSEMLYRGIEQDIFTYN 330

Query: 514 TVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRD 573
           T+L ++ +  +   A +I  +M    I PN  TY+ +ID  +       A  L + M   
Sbjct: 331 TLLDAVCKGGQMDLAFQIMSEMPRKHIMPNVVTYSTVIDGYAKAGRLDEALNLFNEMKFA 390

Query: 574 GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVI 633
                 ++Y  L+ I    G F+EALN+   +   GI  D + YN +L    ++G+ + +
Sbjct: 391 SIGLDRVSYNTLLSIYAKLGRFEEALNVCKEMESSGIKKDAVTYNALLGGYGKQGKYEEV 450

Query: 634 EFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           + + E+M   ++ P+  T   +   Y   G +  AME  +
Sbjct: 451 KRVFEEMKAERIFPNLLTYSTLIDVYSKGGLYQEAMEVFR 490



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 81/376 (21%), Positives = 164/376 (43%), Gaps = 23/376 (6%)

Query: 297 SDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQ 356
           S +I   GR     LA+ +     + G   + + +   I A          ++V + M+ 
Sbjct: 189 SAMISILGRLGQVELAKNVFETALNEGYGNTVYAFSALISAYGRSGYCDEAIKVFETMKS 248

Query: 357 NNLKPQDSTIATLSVECSKA-LELDLAEALLDQISRCTNPKP----FSAFLAACDTMDKP 411
           + LKP   T   +   C K  ++ + A  + D++ R    +P    F++ LA C      
Sbjct: 249 SGLKPNLVTYNAVIDACGKGGVDFNRAAEIFDEMLR-NGVQPDRITFNSLLAVCGRGGLW 307

Query: 412 ERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           E A  +F++M  + +  DI TY  L      ++A  + G    Q+D A +I +   +M R
Sbjct: 308 EAARNLFSEMLYRGIEQDIFTYNTL------LDAVCKGG----QMDLAFQIMS---EMPR 354

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSK---TPLGTPTYNTVLHSLVEAQESHR 527
            +I  + ++   ++      G + E +  F + K     L   +YNT+L    +      
Sbjct: 355 KHIMPNVVTYSTVIDGYAKAGRLDEALNLFNEMKFASIGLDRVSYNTLLSIYAKLGRFEE 414

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A+ + K+M++ GI  +A TYN ++        ++    +   M  +  +P  +TY+ LI 
Sbjct: 415 ALNVCKEMESSGIKKDAVTYNALLGGYGKQGKYEEVKRVFEEMKAERIFPNLLTYSTLID 474

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
           +    G + EA+ +       G+  DV+LY+ ++   C+ G ++     +++M +  ++P
Sbjct: 475 VYSKGGLYQEAMEVFREFKKAGLKADVVLYSALIDALCKNGLVESAVSFLDEMTKEGIRP 534

Query: 648 DPSTCHFVFSGYVNCG 663
           +  T + +   +   G
Sbjct: 535 NVVTYNSIIDAFGRSG 550



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 99/208 (47%), Gaps = 1/208 (0%)

Query: 463 AIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEA 522
           A+  +  RN       +M ++L  LG   + + + +   +         ++ ++ +   +
Sbjct: 174 AVRREQRRNEQGKLASAMISILGRLGQVELAKNVFETALNEGYGNTVYAFSALISAYGRS 233

Query: 523 QESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRC-FKSASALVSMMVRDGFYPQTMT 581
                A+++F+ MK+ G+ PN  TYN +ID C      F  A+ +   M+R+G  P  +T
Sbjct: 234 GYCDEAIKVFETMKSSGLKPNLVTYNAVIDACGKGGVDFNRAAEIFDEMLRNGVQPDRIT 293

Query: 582 YTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMH 641
           + +L+ +    G ++ A NL   +   GI  D+  YNT+L   C+ G++D+   I+ +M 
Sbjct: 294 FNSLLAVCGRGGLWEAARNLFSEMLYRGIEQDIFTYNTLLDAVCKGGQMDLAFQIMSEMP 353

Query: 642 QNKVQPDPSTCHFVFSGYVNCGFHNSAM 669
           +  + P+  T   V  GY   G  + A+
Sbjct: 354 RKHIMPNVVTYSTVIDGYAKAGRLDEAL 381



 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 86/361 (23%), Positives = 153/361 (42%), Gaps = 26/361 (7%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDR-GLRNGMEVLK 352
           ++FS +I A GR+     A ++   M+S GL+P+  TY+  I A            E+  
Sbjct: 221 YAFSALISAYGRSGYCDEAIKVFETMKSSGLKPNLVTYNAVIDACGKGGVDFNRAAEIFD 280

Query: 353 IMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPKPFS--AFLAACDTMD 409
            M +N ++P   T  +L   C +    + A  L  + + R      F+    L A     
Sbjct: 281 EMLRNGVQPDRITFNSLLAVCGRGGLWEAARNLFSEMLYRGIEQDIFTYNTLLDAVCKGG 340

Query: 410 KPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
           + + A +I ++M R+ + P++ TY  +   +       E  N+F+++    +  +I +D 
Sbjct: 341 QMDLAFQIMSEMPRKHIMPNVVTYSTVIDGYAKAGRLDEALNLFNEM----KFASIGLD- 395

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP----TYNTVLHSLVEAQE 524
                    +S   LL      G   E +   C      G      TYN +L    +  +
Sbjct: 396 --------RVSYNTLLSIYAKLGRFEEALN-VCKEMESSGIKKDAVTYNALLGGYGKQGK 446

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
                 +F++MK   I PN  TY+ +ID  S    ++ A  +     + G     + Y+A
Sbjct: 447 YEEVKRVFEEMKAERIFPNLLTYSTLIDVYSKGGLYQEAMEVFREFKKAGLKADVVLYSA 506

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
           LI  L   G  + A++ LD ++ EGI  +V+ YN+I+      GR    E +I+  ++  
Sbjct: 507 LIDALCKNGLVESAVSFLDEMTKEGIRPNVVTYNSIIDAF---GRSGSAECVIDPPYETN 563

Query: 645 V 645
           V
Sbjct: 564 V 564



 Score = 62.4 bits (150), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/298 (19%), Positives = 119/298 (39%), Gaps = 49/298 (16%)

Query: 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
           R +F+ ++  CGR      A  L  +M   G++    TY+  + A+     +    +++ 
Sbjct: 291 RITFNSLLAVCGRGGLWEAARNLFSEMLYRGIEQDIFTYNTLLDAVCKGGQMDLAFQIMS 350

Query: 353 IMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPE 412
            M + ++ P   T +T+    +KA  LD                                
Sbjct: 351 EMPRKHIMPNVVTYSTVIDGYAKAGRLD-------------------------------- 378

Query: 413 RAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471
            A+ +F +M+   +  D  +Y  L S++  +    E  N+  +++S+             
Sbjct: 379 EALNLFNEMKFASIGLDRVSYNTLLSIYAKLGRFEEALNVCKEMESS------------- 425

Query: 472 NIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRA 528
            I+   ++   LL   G +G   E+ + F + K     P   TY+T++    +      A
Sbjct: 426 GIKKDAVTYNALLGGYGKQGKYEEVKRVFEEMKAERIFPNLLTYSTLIDVYSKGGLYQEA 485

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
           ME+F++ K  G+  +   Y+ +ID        +SA + +  M ++G  P  +TY ++I
Sbjct: 486 MEVFREFKKAGLKADVVLYSALIDALCKNGLVESAVSFLDEMTKEGIRPNVVTYNSII 543



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 107/514 (20%), Positives = 199/514 (38%), Gaps = 61/514 (11%)

Query: 119 GLNNKCYLL--MMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVH 176
           G  N  Y    ++ A  + GY +EA  +   + +  G+ P L  YN+ + AC K    V 
Sbjct: 215 GYGNTVYAFSALISAYGRSGYCDEAIKVFETM-KSSGLKPNLVTYNAVIDACGK--GGVD 271

Query: 177 ANLCLDLMDSRM---VGKNEVTYTELLKL----AVWQKNLSAVHEIWEDYIKHYSLSIFS 229
            N   ++ D  +   V  + +T+  LL +     +W+   +   E+    I+     IF+
Sbjct: 272 FNRAAEIFDEMLRNGVQPDRITFNSLLAVCGRGGLWEAARNLFSEMLYRGIEQ---DIFT 328

Query: 230 LRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTS-EGRLRSSRLDIPIPLNALPV 288
               + +  +   +  A++ +  M    +M  +    T  +G  ++ RLD    LN    
Sbjct: 329 YNTLLDAVCKGGQMDLAFQIMSEMPRKHIMPNVVTYSTVIDGYAKAGRLDEA--LNLFNE 386

Query: 289 MKVL-----RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRG 343
           MK       R S++ ++    +      A  +  +M+S G++  + TY+  +        
Sbjct: 387 MKFASIGLDRVSYNTLLSIYAKLGRFEEALNVCKEMESSGIKKDAVTYNALLGGYGKQGK 446

Query: 344 LRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLA 403
                 V + M+   + P   T +TL    SK      A  +  +  +         + A
Sbjct: 447 YEEVKRVFEEMKAERIFPNLLTYSTLIDVYSKGGLYQEAMEVFREFKKAGLKADVVLYSA 506

Query: 404 ACDTMDKP---ERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAK 459
             D + K    E A+    +M ++ +RP++ TY  +   FG        G+    +D   
Sbjct: 507 LIDALCKNGLVESAVSFLDEMTKEGIRPNVVTYNSIIDAFG------RSGSAECVIDPPY 560

Query: 460 RINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVL 516
             N  +M         S  S+K +  A  +E   +E   +I+ F       G        
Sbjct: 561 ETNVSKM---------SSSSLKVVEDATESEVGDKEDNQIIKIF-------GQLAAEKTC 604

Query: 517 HSLVE---AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRD 573
           H+  E    QE    + +F +M    I PN  T++ +++ CS    F+ A    SM++ +
Sbjct: 605 HAKKENRGRQEILCILAVFHKMHELDIKPNVVTFSAILNACSRCNSFEDA----SMLLEE 660

Query: 574 GFYPQTMTYTALIKILLDYGD--FDEALNLLDLV 605
                   Y     +L+ YGD  + +A +L D V
Sbjct: 661 LRLFDNQVYGVAHGLLMGYGDNVWVQAQSLFDEV 694


>gi|242039015|ref|XP_002466902.1| hypothetical protein SORBIDRAFT_01g016180 [Sorghum bicolor]
 gi|241920756|gb|EER93900.1| hypothetical protein SORBIDRAFT_01g016180 [Sorghum bicolor]
          Length = 653

 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 135/577 (23%), Positives = 227/577 (39%), Gaps = 56/577 (9%)

Query: 111 RMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFL-GACA 169
           R+     +  N   Y  +++ALC  G + +A +++  +  R G  PI P+Y+  L  AC+
Sbjct: 104 RLAASVPVPPNAYTYFPVVRALCARGRIADALSVLDEM-RRRGCAPIPPMYHVILEAACS 162

Query: 170 KLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFS 229
           +       +    L D    G            A+   N + V     D       ++  
Sbjct: 163 RGGGGGFRSAVRVLQDLHGRG-----------CALDVGNCNLVLNAVCDQGGSVDEALRL 211

Query: 230 LRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVM 289
           LR    SF    D+ S    L+ +      G++         L    + +  P N +   
Sbjct: 212 LRDLPTSFGCDPDVVSYNAVLKGLCMAKRWGRVQ-------DLMEEMVRVGCPPNVV--- 261

Query: 290 KVLRWSFSDVIHACGRTQNSGLAE---QLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRN 346
                +F+ +I   G    +GL E   Q++ QM   G  P    Y   +  +  +  L  
Sbjct: 262 -----TFNTLI---GYLCRNGLFERVHQVLAQMVDHGCTPDIRMYATVLDGVCKEGHLEV 313

Query: 347 GMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACD 406
             E+L  M    LKP      T+      A   + AE LL ++     P     F    D
Sbjct: 314 AHEILDRMPSYGLKPNVVCYNTVLKGLCSAERWEQAEELLAEMFDNDCPLDDVTFNILVD 373

Query: 407 TMDKPERAIKIFAKMRQKLR----PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRIN 462
              +     ++   + Q L     PD+ TY  +      +N   +EG +   V   K + 
Sbjct: 374 FFCQNGLVYRVIELLEQMLEHGCVPDVITYTTV------INGFCKEGLIDEAVMLLKSMA 427

Query: 463 AIEMDMARNNIQHSHISMKNLLKA---LGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSL 519
           A      R N     I +K L  A   + AE ++ ++I+  C S  P+   T+NTV++ L
Sbjct: 428 ACG---CRPNTISYTIVLKGLCSAERWVDAEDLMSQMIEQGC-SPNPV---TFNTVINFL 480

Query: 520 VEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQT 579
            +     +A+E+ KQM   G  P+  +Y+ +ID          A  L+++MV  G  P T
Sbjct: 481 CKKGLVEQAIELLKQMLLNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNT 540

Query: 580 MTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID-VIEFIIE 638
           + Y+++   L   G  +  + + D +    I  D +LYN ++   C++G  D  IEF + 
Sbjct: 541 IIYSSIASALSKEGRINRVIQMFDNIQDVTIRSDAVLYNAVISSLCKRGGTDRAIEF-LA 599

Query: 639 QMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
            M  +   P+ ST   +  G  + GF   A E L  L
Sbjct: 600 YMVSSGCMPNESTYTILIRGLASEGFVKEAQEMLTEL 636



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/225 (23%), Positives = 90/225 (40%), Gaps = 39/225 (17%)

Query: 491 GMIRELIQYFCDSKTPLG----TPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAAT 546
           G + E ++   D  T  G      +YN VL  L  A+   R  ++ ++M   G PPN  T
Sbjct: 203 GSVDEALRLLRDLPTSFGCDPDVVSYNAVLKGLCMAKRWGRVQDLMEEMVRVGCPPNVVT 262

Query: 547 YNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVS 606
           +N +I        F+    +++ MV  G  P    Y  ++  +   G  + A  +LD + 
Sbjct: 263 FNTLIGYLCRNGLFERVHQVLAQMVDHGCTPDIRMYATVLDGVCKEGHLEVAHEILDRMP 322

Query: 607 LEGIPHDVLLYNTILKKACEKGR-----------------IDVIEF-------------- 635
             G+  +V+ YNT+LK  C   R                 +D + F              
Sbjct: 323 SYGLKPNVVCYNTVLKGLCSAERWEQAEELLAEMFDNDCPLDDVTFNILVDFFCQNGLVY 382

Query: 636 ----IIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
               ++EQM ++   PD  T   V +G+   G  + A+  L+ ++
Sbjct: 383 RVIELLEQMLEHGCVPDVITYTTVINGFCKEGLIDEAVMLLKSMA 427


>gi|3107905|dbj|BAA25906.1| leaf protein [Ipomoea nil]
          Length = 665

 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 72/287 (25%), Positives = 122/287 (42%), Gaps = 16/287 (5%)

Query: 396 KPFSAFL-----AACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEG 449
           +P S F      A C++ +  E A+KIF KMR+K  +P   T+  L   FG +  P E  
Sbjct: 135 RPDSIFFNPMINAFCESGNVKE-AMKIFRKMREKGCKPTASTFNALIKGFGIIGKPEESS 193

Query: 450 NMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGT 509
            +   +   + I     D   N +  +  +  N+ KA G       ++     +      
Sbjct: 194 KLLEIMSREENIKPD--DRTYNILVQAWCNKNNIEKAWG-------VVHRMVGAGLKPDV 244

Query: 510 PTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSM 569
            TYNT+  +    +E+ RA E+  QM+   + PN  T  I++D  S       A   +  
Sbjct: 245 VTYNTIARAYARGKETSRAAELISQMQNNKVAPNVRTCGIVVDGYSKEGNMADALKFIYK 304

Query: 570 MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
           M   G +P    + +L+K  LD  D       L L+   G+  DV+ Y+TI+      G 
Sbjct: 305 MQGFGVHPNLFIFNSLLKGFLDITDTKGVDETLTLMQEFGVKPDVVTYSTIMNAWSSAGL 364

Query: 630 IDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
           ++  E + + M ++ ++PD      +  GYV  G    A   L+ ++
Sbjct: 365 MEKCEEMFQDMIKSGIEPDNHAFSILAKGYVRAGEPKKAEALLEAMA 411



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 78/386 (20%), Positives = 169/386 (43%), Gaps = 27/386 (6%)

Query: 315 LMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECS 374
           L+ +++  GL+P S  ++  I A      ++  M++ + M++   KP  ST   L     
Sbjct: 125 LLKKVEQNGLRPDSIFFNPMINAFCESGNVKEAMKIFRKMREKGCKPTASTFNALIKGFG 184

Query: 375 KALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDKPERAIKIFAKM-RQKLRPDI 429
              + + +  LL+ +SR  N KP    ++  + A    +  E+A  +  +M    L+PD+
Sbjct: 185 IIGKPEESSKLLEIMSREENIKPDDRTYNILVQAWCNKNNIEKAWGVVHRMVGAGLKPDV 244

Query: 430 RTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGA 489
            TY  +          Y  G   S+  +A+ I+ ++ +    N++   I    ++     
Sbjct: 245 VTYNTIARA-------YARGKETSR--AAELISQMQNNKVAPNVRTCGI----VVDGYSK 291

Query: 490 EGMIRELIQYFCDSKTPLGTPT---YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAAT 546
           EG + + +++    +     P    +N++L   ++  ++    E    M+  G+ P+  T
Sbjct: 292 EGNMADALKFIYKMQGFGVHPNLFIFNSLLKGFLDITDTKGVDETLTLMQEFGVKPDVVT 351

Query: 547 YNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVS 606
           Y+ +++  S     +    +   M++ G  P    ++ L K  +  G+  +A  LL+ ++
Sbjct: 352 YSTIMNAWSSAGLMEKCEEMFQDMIKSGIEPDNHAFSILAKGYVRAGEPKKAEALLEAMA 411

Query: 607 LEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHN 666
             G   +V+++ TI+   C   +++    + ++M +  VQP+ +T   +  GY       
Sbjct: 412 THGAHPNVVMFTTIISGWCSAAKMEDALRVYDRMCRMDVQPNLNTFETLIWGYGEANEPW 471

Query: 667 SAMEALQVLSMRMLCEEVSTLEEKRS 692
            A E LQ++      EE+  L  K +
Sbjct: 472 KAEELLQIM------EEMGVLPRKNT 491



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 75/189 (39%), Gaps = 36/189 (19%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TY TVL +L   +       + K+++  G+ P++  +N MI+        K A  +   M
Sbjct: 105 TYTTVLAALTLQKRFKSIPLLLKKVEQNGLRPDSIFFNPMINAFCESGNVKEAMKIFRKM 164

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSL-EGIPHDVLLYNTILKKACEKGR 629
              G  P   T+ ALIK     G  +E+  LL+++S  E I  D   YN +++  C K  
Sbjct: 165 REKGCKPTASTFNALIKGFGIIGKPEESSKLLEIMSREENIKPDDRTYNILVQAWCNKNN 224

Query: 630 I-----------------DVIEF------------------IIEQMHQNKVQPDPSTCHF 654
           I                 DV+ +                  +I QM  NKV P+  TC  
Sbjct: 225 IEKAWGVVHRMVGAGLKPDVVTYNTIARAYARGKETSRAAELISQMQNNKVAPNVRTCGI 284

Query: 655 VFSGYVNCG 663
           V  GY   G
Sbjct: 285 VVDGYSKEG 293



 Score = 45.1 bits (105), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 28/148 (18%), Positives = 66/148 (44%), Gaps = 1/148 (0%)

Query: 515 VLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDG 574
           ++ +L+E  +      I K +   G  P   TY  ++   ++ + FKS   L+  + ++G
Sbjct: 74  LMKTLIERGKPQEVHSITKGLTEEGHRPTLVTYTTVLAALTLQKRFKSIPLLLKKVEQNG 133

Query: 575 FYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIE 634
             P ++ +  +I    + G+  EA+ +   +  +G       +N ++K     G+ +   
Sbjct: 134 LRPDSIFFNPMINAFCESGNVKEAMKIFRKMREKGCKPTASTFNALIKGFGIIGKPEESS 193

Query: 635 FIIEQM-HQNKVQPDPSTCHFVFSGYVN 661
            ++E M  +  ++PD  T + +   + N
Sbjct: 194 KLLEIMSREENIKPDDRTYNILVQAWCN 221



 Score = 42.4 bits (98), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 56/278 (20%), Positives = 107/278 (38%), Gaps = 42/278 (15%)

Query: 79  GHAHHSLGADDFFHILNYC------ARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQAL 132
           G  H  +GA     ++ Y       AR  +     E    M+  ++  N +   +++   
Sbjct: 230 GVVHRMVGAGLKPDVVTYNTIARAYARGKETSRAAELISQMQNNKVAPNVRTCGIVVDGY 289

Query: 133 CKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKN 192
            K G + +A   IY + + +G++P L ++NS L     +      +  L LM    V  +
Sbjct: 290 SKEGNMADALKFIYKM-QGFGVHPNLFIFNSLLKGFLDITDTKGVDETLTLMQEFGVKPD 348

Query: 193 EVTYTELLKLAVWQKNLSAVHEIWEDYIK------HYSLSIFSLRKFVWSFTRLRDLKSA 246
            VTY+ ++        +    E+++D IK      +++ SI +       + R  + K A
Sbjct: 349 VVTYSTIMNAWSSAGLMEKCEEMFQDMIKSGIEPDNHAFSILAK-----GYVRAGEPKKA 403

Query: 247 YETLQHMVA------LAMMGKLYINRTSEGRL--------RSSRLDIPIPLNALPVMKVL 292
              L+ M        + M   +     S  ++        R  R+D+   LN        
Sbjct: 404 EALLEAMATHGAHPNVVMFTTIISGWCSAAKMEDALRVYDRMCRMDVQPNLN-------- 455

Query: 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHT 330
             +F  +I   G       AE+L+  M+ +G+ P  +T
Sbjct: 456 --TFETLIWGYGEANEPWKAEELLQIMEEMGVLPRKNT 491


>gi|125582652|gb|EAZ23583.1| hypothetical protein OsJ_07284 [Oryza sativa Japonica Group]
          Length = 667

 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 75/327 (22%), Positives = 137/327 (41%), Gaps = 33/327 (10%)

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI---SRCTNPKPFSAFLAACDTMDK 410
           M ++  +P   T  +L V   +  ++D+A  L D++       +   ++  +       +
Sbjct: 1   MVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEAGR 60

Query: 411 PERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMF-----------------S 453
            + A+++F +M Q   PD+  Y  L     N     EEG +                  +
Sbjct: 61  IDEAVELFGEMDQ---PDMHMYAALVKGLCNAERG-EEGLLMLRRMKELGWRPSTRAYAA 116

Query: 454 QVD------SAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPL 507
            VD       AK    +  +M    +    ++   ++ A   EG + + ++     K   
Sbjct: 117 VVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRG 176

Query: 508 GTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSAS 564
             P   TYN ++       + H+AM +  +M+ CG+ P+A TYN++I    I    +SA 
Sbjct: 177 CKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCIDGHIESAF 236

Query: 565 ALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKA 624
            L+ +M  DG      TY ALI  L   G  D+A +L D +   GI  + + +N+++   
Sbjct: 237 RLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGL 296

Query: 625 CEKGRIDVIEFIIEQMHQNKVQPDPST 651
           C+ G+ D+    +E+M      PD  T
Sbjct: 297 CKSGKADIAWKFLEKMVSAGCTPDTYT 323



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/255 (23%), Positives = 105/255 (41%), Gaps = 14/255 (5%)

Query: 421 MRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISM 480
           +R   RPD  T+  L   +   N          QVD A+ +      M         +S 
Sbjct: 2   VRSGWRPDAYTFNSLIVGYCRTN----------QVDVARDLFD---KMPLRGFAQDVVSY 48

Query: 481 KNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGI 540
             L++ L   G I E ++ F +   P     Y  ++  L  A+     + + ++MK  G 
Sbjct: 49  ATLIEGLCEAGRIDEAVELFGEMDQP-DMHMYAALVKGLCNAERGEEGLLMLRRMKELGW 107

Query: 541 PPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALN 600
            P+   Y  ++D     R  K A  ++  M   G  P  +T TA+I      G   +AL 
Sbjct: 108 RPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALR 167

Query: 601 LLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYV 660
           +L+L+ L G   +V  YN +++  C +G++     ++ +M    V PD  T + +  G  
Sbjct: 168 VLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQC 227

Query: 661 NCGFHNSAMEALQVL 675
             G   SA   L+++
Sbjct: 228 IDGHIESAFRLLRLM 242



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 80/371 (21%), Positives = 152/371 (40%), Gaps = 30/371 (8%)

Query: 315 LMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDST-IATLSVEC 373
           ++ +M+ LG +PS+  Y   +     +R  +   E+L+ M +  L P   T  A ++  C
Sbjct: 98  MLRRMKELGWRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYC 157

Query: 374 SKALELDLAEAL-LDQISRCT-NPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIR 430
            +    D    L L ++  C  N   ++A +       K  +A+ +  KMR   + PD  
Sbjct: 158 KEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAV 217

Query: 431 TYELLF---SLFGNVNAPYE-------EGNMFSQVDSAKRINAIEMD------------M 468
           TY LL     + G++ + +        +G +  Q      INA+  D            +
Sbjct: 218 TYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSL 277

Query: 469 ARNNIQHSHISMKNLLKAL---GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQES 525
               I+ + ++  +L+  L   G   +  + ++    +     T TY++ +  L + + S
Sbjct: 278 ETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGS 337

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
              +    +M    + P+   Y I+I      R +   +     MV  G  P  +TYT  
Sbjct: 338 QEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTS 397

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           ++     G  +EA N+L  +S  G+  D + YNT++      G+ D    I++QM     
Sbjct: 398 MRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVAS 457

Query: 646 QPDPSTCHFVF 656
            P+  T +F+ 
Sbjct: 458 VPNQFT-YFIL 467



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 122/647 (18%), Positives = 251/647 (38%), Gaps = 42/647 (6%)

Query: 32  NKLELSRTLTTTM---GLNEESISKATQMQIVDALCRGER-SRASHLLLNLGHAHHSLGA 87
           N+++++R L   M   G  ++ +S AT   +++ LC   R   A  L   +      + A
Sbjct: 24  NQVDVARDLFDKMPLRGFAQDVVSYAT---LIEGLCEAGRIDEAVELFGEMDQPDMHMYA 80

Query: 88  DDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYF 147
                + N   R  + L ++   R M+E     + + Y  ++   C+    +EA  ++  
Sbjct: 81  ALVKGLCN-AERGEEGLLML---RRMKELGWRPSTRAYAAVVDFRCRERKAKEAEEMLQE 136

Query: 148 LGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQK 207
           + E+ G+ P +    + + A  K   M  A   L+LM  R    N  TY  L++      
Sbjct: 137 MFEK-GLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFC--- 192

Query: 208 NLSAVHEIWEDYIKHYSLSI----FSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLY 263
           N   VH+      K  +  +     +    +        ++SA+  L+ M    ++   Y
Sbjct: 193 NEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQY 252

Query: 264 I-NRTSEGRLRSSRLDIPIPL-NALPV--MKVLRWSFSDVIHACGRTQNSGLAEQLMLQM 319
             N       +  R D    L ++L    +K    +F+ +I+   ++  + +A + + +M
Sbjct: 253 TYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKM 312

Query: 320 QSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALEL 379
            S G  P ++TY  FI  +   +G + G+  +  M Q ++KP       +  +  K    
Sbjct: 313 VSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNY 372

Query: 380 DL-AEALLDQISRCTNPK--PFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELL 435
            L A    + +S   NP    ++  + A     +   A  +  +M +  +  D   Y  L
Sbjct: 373 GLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTL 432

Query: 436 FSLFGNVNAPYEEGNMFSQVDSAKRI-----------NAIEMDMARNNIQHSHISMKNLL 484
                ++       ++  Q+ S   +           + + M +  + +  +   +   +
Sbjct: 433 MDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVEDVLPLTPAGVWKAI 492

Query: 485 KALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNA 544
           +     G+   + +   +   P  + TY+++L    E   +  A  +   MK   I  N 
Sbjct: 493 ELTDVFGLFDVMKK---NEFLP-NSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNE 548

Query: 545 ATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDL 604
             Y  ++ C    + +  A  LV  M++ GF PQ M+Y  L+  L+  G  D+A  +   
Sbjct: 549 DIYTALVTCFCKSKRYLDAWVLVCSMIQHGFIPQLMSYQHLLSGLICEGQTDKAKEIFMN 608

Query: 605 VSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
              +    D +++  I+    +KG  D+   +I  + +   +P   T
Sbjct: 609 SRWKDYSPDEIVWKVIIDGLIKKGHSDISREMIIMLERMNCRPSHQT 655



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 101/490 (20%), Positives = 184/490 (37%), Gaps = 66/490 (13%)

Query: 239 RLRDLKSAYETLQHM-----VALAMMGKLYINR-TSEGRLRSSRLDIPIPLNALPVMKVL 292
           R R  K A E LQ M         +     IN    EGR+  +       L  L +MK L
Sbjct: 123 RERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDA-------LRVLELMK-L 174

Query: 293 R------WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRN 346
           R      W+++ ++           A  L+ +M++ G+ P + TY+  IR    D  + +
Sbjct: 175 RGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCIDGHIES 234

Query: 347 GMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI-SRCTNPKP--FSAFLA 403
              +L++M+ + L     T   L     K    D A +L D + +R   P    F++ + 
Sbjct: 235 AFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLIN 294

Query: 404 ACDTMDKPERAIKIFAKM-RQKLRPDIRTY----ELLFSLFGNVNAPYEEGNMFSQVDSA 458
                 K + A K   KM      PD  TY    E L  + G+       G M  +    
Sbjct: 295 GLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKP 354

Query: 459 KRINAIEM------------------DMARNNIQHSHISMKNLLKALGAEGMIRE---LI 497
             +N   +                  +M  +      ++    ++A   EG + E   ++
Sbjct: 355 STVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVL 414

Query: 498 QYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSII 557
                +   + T  YNT++       ++  A+ I KQM +    PN  TY I++     +
Sbjct: 415 MEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRM 474

Query: 558 RCFK-----------------SASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALN 600
           R  +                     L  +M ++ F P + TY+++++   + G  +EA +
Sbjct: 475 RLVEDVLPLTPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATS 534

Query: 601 LLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYV 660
           L+ L+  + I  +  +Y  ++   C+  R      ++  M Q+   P   +   + SG +
Sbjct: 535 LVSLMKEDSISLNEDIYTALVTCFCKSKRYLDAWVLVCSMIQHGFIPQLMSYQHLLSGLI 594

Query: 661 NCGFHNSAME 670
             G  + A E
Sbjct: 595 CEGQTDKAKE 604



 Score = 55.8 bits (133), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 83/416 (19%), Positives = 158/416 (37%), Gaps = 47/416 (11%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A +L+  M+  GL    +TY+  I A+  D        +   ++   +KP   T  +L  
Sbjct: 235 AFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLIN 294

Query: 372 ECSKALELDLAEALLDQI--SRCT-NPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRP 427
              K+ + D+A   L+++  + CT +   +S+F+     M   +  +    +M QK ++P
Sbjct: 295 GLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKP 354

Query: 428 DI-------------RTYELLFSLFGNVNAPYEEGNMFSQVDSAK------RINAIE--- 465
                          R Y L+   +G + +     ++ +   S +      R+N  E   
Sbjct: 355 STVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVL 414

Query: 466 MDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLV-- 520
           M+M++N +    ++   L+    + G     +       +    P   TY  +L  LV  
Sbjct: 415 MEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRM 474

Query: 521 ---------------EAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASA 565
                          +A E      +F  MK     PN+ TY+ +++  S     + A++
Sbjct: 475 RLVEDVLPLTPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATS 534

Query: 566 LVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKAC 625
           LVS+M  D        YTAL+        + +A  L+  +   G    ++ Y  +L    
Sbjct: 535 LVSLMKEDSISLNEDIYTALVTCFCKSKRYLDAWVLVCSMIQHGFIPQLMSYQHLLSGLI 594

Query: 626 EKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLC 681
            +G+ D  + I          PD      +  G +  G  + + E + +L  RM C
Sbjct: 595 CEGQTDKAKEIFMNSRWKDYSPDEIVWKVIIDGLIKKGHSDISREMIIMLE-RMNC 649



 Score = 40.8 bits (94), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 34/168 (20%), Positives = 69/168 (41%), Gaps = 4/168 (2%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           T+N+++       +   A ++F +M   G   +  +Y  +I+          A  L   M
Sbjct: 12  TFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEAGRIDEAVELFGEM 71

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
            +    P    Y AL+K L +    +E L +L  +   G       Y  ++   C + + 
Sbjct: 72  DQ----PDMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPSTRAYAAVVDFRCRERKA 127

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678
              E ++++M +  + P   TC  V + Y   G  + A+  L+++ +R
Sbjct: 128 KEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLR 175


>gi|399216092|emb|CCF72780.1| unnamed protein product [Babesia microti strain RI]
          Length = 1520

 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 67/283 (23%), Positives = 134/283 (47%), Gaps = 17/283 (6%)

Query: 398  FSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVD 456
            +SA L AC  ++ P+  ++   K ++    PD++TY LL   F + +   E  ++++++ 
Sbjct: 910  YSAILDACIRINSPDHLLESVNKYKKFGFHPDLQTYGLLIKFFSSSDNVMECFHLWNEMT 969

Query: 457  SAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCD----SKTPLGTPTY 512
            S   +   E++          ++   +  AL +  M+ E +    D    S     T  Y
Sbjct: 970  S---LYGYELN---------EVTYGCMFDALVSNNMLDEALSLLKDMKKNSNIKPNTIIY 1017

Query: 513  NTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVR 572
            +T++    + ++ ++A+ I+  M   G+ PN  TYN +ID C+ +     A+ L+  M+ 
Sbjct: 1018 STLIKGFGQTKQLNKALNIYLTMLDEGVVPNTITYNSIIDACARVGDMNKAANLLEDMLN 1077

Query: 573  DGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDV 632
            +   P  +T++ +IK      + D +L LL  +S  GI  D +LYN++L    + GR  +
Sbjct: 1078 NNIEPDLITFSTVIKGYCVQSNMDRSLQLLRAMSERGIKPDGILYNSLLDGCVKSGRPWL 1137

Query: 633  IEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
             + + ++M +N + P   T   +   Y   G  + A + +  L
Sbjct: 1138 CQQLWDEMQENGIAPSNFTLTILIKMYGRLGQLDKAFQLMDEL 1180



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 46/224 (20%), Positives = 86/224 (38%), Gaps = 43/224 (19%)

Query: 492  MIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI 551
            M+ +L+QY       +    Y+ +L + +        +E   + K  G  P+  TY ++I
Sbjct: 896  MMTDLLQYH------MSNDFYSAILDACIRINSPDHLLESVNKYKKFGFHPDLQTYGLLI 949

Query: 552  DCCS----IIRCF---------------------------------KSASALVSMMVRDG 574
               S    ++ CF                                 ++ S L  M     
Sbjct: 950  KFFSSSDNVMECFHLWNEMTSLYGYELNEVTYGCMFDALVSNNMLDEALSLLKDMKKNSN 1009

Query: 575  FYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIE 634
              P T+ Y+ LIK        ++ALN+   +  EG+  + + YN+I+      G ++   
Sbjct: 1010 IKPNTIIYSTLIKGFGQTKQLNKALNIYLTMLDEGVVPNTITYNSIIDACARVGDMNKAA 1069

Query: 635  FIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678
             ++E M  N ++PD  T   V  GY      + +++ L+ +S R
Sbjct: 1070 NLLEDMLNNNIEPDLITFSTVIKGYCVQSNMDRSLQLLRAMSER 1113



 Score = 49.7 bits (117), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 65/270 (24%), Positives = 117/270 (43%), Gaps = 28/270 (10%)

Query: 379  LDLAEALLDQISRCTNPKP----FSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYE 433
            LD A +LL  + + +N KP    +S  +       +  +A+ I+  M  + + P+  TY 
Sbjct: 994  LDEALSLLKDMKKNSNIKPNTIIYSTLIKGFGQTKQLNKALNIYLTMLDEGVVPNTITYN 1053

Query: 434  LLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAE-GM 492
             +      ++A    G+M       K  N +E DM  NNI+   I+   ++K    +  M
Sbjct: 1054 SI------IDACARVGDM------NKAANLLE-DMLNNNIEPDLITFSTVIKGYCVQSNM 1100

Query: 493  IR--ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIM 550
             R  +L++   +         YN++L   V++       +++ +M+  GI P+  T  I+
Sbjct: 1101 DRSLQLLRAMSERGIKPDGILYNSLLDGCVKSGRPWLCQQLWDEMQENGIAPSNFTLTIL 1160

Query: 551  IDCCSIIRCFKSASALVSMMVRD-GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEG 609
            I     +     A  L+  + R       T  YT L+   +  G +  AL++ + ++  G
Sbjct: 1161 IKMYGRLGQLDKAFQLMDELPRKYNIQTNTHVYTCLMSACITNGKYKMALDVFNCMNGNG 1220

Query: 610  IPHDVLLYNTILKKACEKGR-----IDVIE 634
            I  D   Y TI+  A  KGR     ID+I+
Sbjct: 1221 IVPDSKTYETIIFGAI-KGRLLYQVIDIIK 1249



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 75/166 (45%), Gaps = 12/166 (7%)

Query: 295  SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
            +FS VI       N   + QL+  M   G++P    Y+  +   V         ++   M
Sbjct: 1086 TFSTVIKGYCVQSNMDRSLQLLRAMSERGIKPDGILYNSLLDGCVKSGRPWLCQQLWDEM 1145

Query: 355  QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR----CTNPKPFSAFLAACDTMDK 410
            Q+N + P + T+  L     +  +LD A  L+D++ R     TN   ++  ++AC T  K
Sbjct: 1146 QENGIAPSNFTLTILIKMYGRLGQLDKAFQLMDELPRKYNIQTNTHVYTCLMSACITNGK 1205

Query: 411  PERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQV 455
             + A+ +F  M    + PD +TYE +  +FG +     +G +  QV
Sbjct: 1206 YKMALDVFNCMNGNGIVPDSKTYETI--IFGAI-----KGRLLYQV 1244


>gi|255574497|ref|XP_002528160.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532417|gb|EEF34211.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 569

 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 80/343 (23%), Positives = 148/343 (43%), Gaps = 21/343 (6%)

Query: 351 LKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDK 410
            ++++   +  +D+    L   C+  L L+ AEA+  ++ +   P     + A  D + K
Sbjct: 172 FELIEARCIPTEDTYALLLKAYCTSGL-LEKAEAIFAEMRKYGLPPSAIVYNAYIDGLMK 230

Query: 411 ---PERAIKIFAKMRQKL-RPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM 466
              P+RA++IF +M++   +P   TY LL +L G  +  Y    +F+++ S K       
Sbjct: 231 AGNPQRAVEIFQRMKRDCCQPSTETYTLLINLHGKASQSYMALKLFNEMRSQK------- 283

Query: 467 DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQ 523
              + NI     +   L+ A   EG+  +  + F   +     P    YN ++ +   A 
Sbjct: 284 --CKPNI----CTYTALVNAFAREGLCEKAEEIFEQLQEDGHEPDVYAYNALMEAYSRAG 337

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
             + A EIF  M+  G  P+ A+YNIM+D        + A A+   M R G  P   ++ 
Sbjct: 338 FPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRGGLHEDAQAVFEEMKRLGITPTMKSHM 397

Query: 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
            L+      GD  +  ++++ +   G+  D  + N++L      G+   +E ++  M   
Sbjct: 398 LLLSAYSKAGDVAKCEDIVNELHESGLEPDTFVLNSMLNLYGRLGQFGKMEEVLTAMESG 457

Query: 644 KVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
               D ST + + + Y   GF        Q L+ + L  +V T
Sbjct: 458 PYATDISTYNILINIYGRAGFFEKMEGLFQSLAAKNLKPDVVT 500


>gi|358346916|ref|XP_003637510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503445|gb|AES84648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 718

 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 116/532 (21%), Positives = 209/532 (39%), Gaps = 80/532 (15%)

Query: 140 EASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTEL 199
           E  NL+  L    G  P    YN  L A  + + +      ++++ S+MV  NE    ++
Sbjct: 105 EIENLLKILENELGFKPDTNFYNIALNALVEDNKLK----LVEMLHSKMV--NEGIVLDV 158

Query: 200 LKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLR-------DLKSAYETLQH 252
               V  K L   H++    +    ++   L+    +FT L        DL  A +  + 
Sbjct: 159 STFNVLIKALCKAHQLRPAILMLEEMANHGLKPDEITFTTLMQGFIEEGDLNGALKMKKQ 218

Query: 253 MVALAMM-----GKLYINR-TSEGRLRSS-RLDIPIPLNALPVMKVLRWSFSDVIHACGR 305
           M+    +      K+ +N    EGR+  + R  + +        +V   +F+ +++   R
Sbjct: 219 MLGYGCLLTNVSVKVLVNGFCKEGRVEEALRFVLEVSEEGFSPDQV---TFNSLVNGFCR 275

Query: 306 TQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDST 365
             N   A  ++  M   G  P  +TY+  I  +         +E+L+ M      P   T
Sbjct: 276 IGNVNDALDIVDFMIEKGFDPDVYTYNSLISGMCKLGEFEKAIEILQQMILRECSPNTVT 335

Query: 366 IATLSVECSKALEL----DLAEALLDQ---ISRCTNPKPFSAFLAACDTMDKPERAIKIF 418
             TL     K  E+    DLA  L+ +      CT    F+  +         + A+++F
Sbjct: 336 YNTLISALCKENEIEAATDLARILVSKGLLPDVCT----FNTLIQGLCLSKNQDIAMEMF 391

Query: 419 AKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSH 477
            +M+ K  +PD  TY +L       +  YE           +R+    M           
Sbjct: 392 EEMKNKGCKPDEFTYSILID-----SLCYE-----------RRLKEALM----------- 424

Query: 478 ISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKT 537
                LLK + + G  R  +              YNT++  L +++    A EIF QM+ 
Sbjct: 425 -----LLKEMESSGCARNAV-------------VYNTLIDGLCKSRRIEDAEEIFDQMEL 466

Query: 538 CGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDE 597
            G+  ++ TYN +ID     +  + AS L+  M+ +G  P   TY +L+      GD ++
Sbjct: 467 LGVSRSSVTYNTLIDGLCKNKRVEEASQLMDQMIMEGLKPDKFTYNSLLTYFCRVGDIEK 526

Query: 598 ALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649
           A +++  ++  G   D+  Y T++   C  GR+DV   ++  +    +   P
Sbjct: 527 AGDIVQTMASNGCEPDIFTYGTLIGGLCRAGRVDVASKLLRSVQMKGIVLTP 578



 Score = 76.3 bits (186), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 113/589 (19%), Positives = 233/589 (39%), Gaps = 65/589 (11%)

Query: 32  NKLELSRTLTTTMGLNEESISKATQMQI-VDALCRGERSRASHLLLNLGHAHHSLGADD- 89
           NKL+L   L + M +NE  +   +   + + ALC+  + R + L+L    A+H L  D+ 
Sbjct: 137 NKLKLVEMLHSKM-VNEGIVLDVSTFNVLIKALCKAHQLRPAILMLE-EMANHGLKPDEI 194

Query: 90  -FFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFL 148
            F  ++       D    ++  + M      L N    +++   CK G +EEA   +  +
Sbjct: 195 TFTTLMQGFIEEGDLNGALKMKKQMLGYGCLLTNVSVKVLVNGFCKEGRVEEALRFVLEV 254

Query: 149 GERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELL----KLAV 204
            E  G  P    +NS +    ++ ++  A   +D M  +    +  TY  L+    KL  
Sbjct: 255 SEE-GFSPDQVTFNSLVNGFCRIGNVNDALDIVDFMIEKGFDPDVYTYNSLISGMCKLGE 313

Query: 205 WQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYI 264
           ++K   A+  + +  ++  S +  +    + +  +  ++++A +  + +V+  ++  +  
Sbjct: 314 FEK---AIEILQQMILRECSPNTVTYNTLISALCKENEIEAATDLARILVSKGLLPDV-- 368

Query: 265 NRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGL 324
                                         +F+ +I     ++N  +A ++  +M++ G 
Sbjct: 369 -----------------------------CTFNTLIQGLCLSKNQDIAMEMFEEMKNKGC 399

Query: 325 QPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEA 384
           +P   TY   I ++  +R L+  + +LK M+ +          TL     K+  ++ AE 
Sbjct: 400 KPDEFTYSILIDSLCYERRLKEALMLLKEMESSGCARNAVVYNTLIDGLCKSRRIEDAEE 459

Query: 385 LLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ----KLRPDIRTYELLFSLFG 440
           + DQ+      +    +    D + K +R  +    M Q     L+PD  TY  L +   
Sbjct: 460 IFDQMELLGVSRSSVTYNTLIDGLCKNKRVEEASQLMDQMIMEGLKPDKFTYNSLLT--- 516

Query: 441 NVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMI---RELI 497
                      F +V   ++   I   MA N  +    +   L+  L   G +    +L+
Sbjct: 517 ----------YFCRVGDIEKAGDIVQTMASNGCEPDIFTYGTLIGGLCRAGRVDVASKLL 566

Query: 498 QYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI-DCCSI 556
           +        L    YN V+ +L   + +   M +F++M     PP+A T+ I+    C+ 
Sbjct: 567 RSVQMKGIVLTPHAYNPVIQALFMRKRTKEGMRLFREMMEKSDPPDALTHKIVFRGLCNG 626

Query: 557 IRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLV 605
               + A      M+  G  P+  ++  L + L      D  + L+++V
Sbjct: 627 GGPIQEAIDFTVEMLEKGILPEFPSFGFLAEGLCSLSMEDTLIELINMV 675



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 89/396 (22%), Positives = 164/396 (41%), Gaps = 31/396 (7%)

Query: 311 LAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLS 370
           L E L  +M + G+     T++  I+A+     LR  + +L+ M  + LKP + T  TL 
Sbjct: 141 LVEMLHSKMVNEGIVLDVSTFNVLIKALCKAHQLRPAILMLEEMANHGLKPDEITFTTLM 200

Query: 371 VECSKALELDLAEALLDQI----SRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-L 425
               +  +L+ A  +  Q+       TN          C    + E A++   ++ ++  
Sbjct: 201 QGFIEEGDLNGALKMKKQMLGYGCLLTNVSVKVLVNGFCKE-GRVEEALRFVLEVSEEGF 259

Query: 426 RPDIRTYELLFSLF---GNVNAP----------------YEEGNMFS---QVDSAKRINA 463
            PD  T+  L + F   GNVN                  Y   ++ S   ++   ++   
Sbjct: 260 SPDQVTFNSLVNGFCRIGNVNDALDIVDFMIEKGFDPDVYTYNSLISGMCKLGEFEKAIE 319

Query: 464 IEMDMARNNIQHSHISMKNLLKALGAEGMIR---ELIQYFCDSKTPLGTPTYNTVLHSLV 520
           I   M       + ++   L+ AL  E  I    +L +            T+NT++  L 
Sbjct: 320 ILQQMILRECSPNTVTYNTLISALCKENEIEAATDLARILVSKGLLPDVCTFNTLIQGLC 379

Query: 521 EAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTM 580
            ++    AME+F++MK  G  P+  TY+I+ID     R  K A  L+  M   G     +
Sbjct: 380 LSKNQDIAMEMFEEMKNKGCKPDEFTYSILIDSLCYERRLKEALMLLKEMESSGCARNAV 439

Query: 581 TYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQM 640
            Y  LI  L      ++A  + D + L G+    + YNT++   C+  R++    +++QM
Sbjct: 440 VYNTLIDGLCKSRRIEDAEEIFDQMELLGVSRSSVTYNTLIDGLCKNKRVEEASQLMDQM 499

Query: 641 HQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
               ++PD  T + + + +   G    A + +Q ++
Sbjct: 500 IMEGLKPDKFTYNSLLTYFCRVGDIEKAGDIVQTMA 535



 Score = 70.1 bits (170), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 78/168 (46%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TY+ ++ SL   +    A+ + K+M++ G   NA  YN +ID     R  + A  +   M
Sbjct: 405 TYSILIDSLCYERRLKEALMLLKEMESSGCARNAVVYNTLIDGLCKSRRIEDAEEIFDQM 464

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
              G    ++TY  LI  L      +EA  L+D + +EG+  D   YN++L   C  G I
Sbjct: 465 ELLGVSRSSVTYNTLIDGLCKNKRVEEASQLMDQMIMEGLKPDKFTYNSLLTYFCRVGDI 524

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678
           +    I++ M  N  +PD  T   +  G    G  + A + L+ + M+
Sbjct: 525 EKAGDIVQTMASNGCEPDIFTYGTLIGGLCRAGRVDVASKLLRSVQMK 572



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 66/328 (20%), Positives = 139/328 (42%), Gaps = 24/328 (7%)

Query: 368 TLSVECSKALELDLAEALLDQI---SRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK 424
           TL ++ +++   D    LL Q+       N   F+  + +     + E  +KI       
Sbjct: 60  TLLLQLTQSSSFDSITTLLKQLKSSGSIPNATTFATLIQSFTNFHEIENLLKILEN-ELG 118

Query: 425 LRPDIRTYELLFSLFGNVNAPYEEGNM-FSQVDSAKRIN-AIEMDMARNNIQHSHISMKN 482
            +PD   Y +       +NA  E+  +   ++  +K +N  I +D++  N+         
Sbjct: 119 FKPDTNFYNIA------LNALVEDNKLKLVEMLHSKMVNEGIVLDVSTFNV--------- 163

Query: 483 LLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCG 539
           L+KAL     +R  I    +       P   T+ T++   +E  + + A+++ KQM   G
Sbjct: 164 LIKALCKAHQLRPAILMLEEMANHGLKPDEITFTTLMQGFIEEGDLNGALKMKKQMLGYG 223

Query: 540 IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEAL 599
                 +  ++++        + A   V  +  +GF P  +T+ +L+      G+ ++AL
Sbjct: 224 CLLTNVSVKVLVNGFCKEGRVEEALRFVLEVSEEGFSPDQVTFNSLVNGFCRIGNVNDAL 283

Query: 600 NLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
           +++D +  +G   DV  YN+++   C+ G  +    I++QM   +  P+  T + + S  
Sbjct: 284 DIVDFMIEKGFDPDVYTYNSLISGMCKLGEFEKAIEILQQMILRECSPNTVTYNTLISAL 343

Query: 660 VNCGFHNSAMEALQVLSMRMLCEEVSTL 687
                  +A +  ++L  + L  +V T 
Sbjct: 344 CKENEIEAATDLARILVSKGLLPDVCTF 371



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 77/166 (46%), Gaps = 12/166 (7%)

Query: 510 PTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSM 569
           P   T+L  L ++        + KQ+K+ G  PNA T+  +I        F     L+ +
Sbjct: 56  PPNETLLLQLTQSSSFDSITTLLKQLKSSGSIPNATTFATLIQS---FTNFHEIENLLKI 112

Query: 570 MVRD-GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSL----EGIPHDVLLYNTILKKA 624
           +  + GF P T  Y   +  L++    D  L L++++      EGI  DV  +N ++K  
Sbjct: 113 LENELGFKPDTNFYNIALNALVE----DNKLKLVEMLHSKMVNEGIVLDVSTFNVLIKAL 168

Query: 625 CEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAME 670
           C+  ++     ++E+M  + ++PD  T   +  G++  G  N A++
Sbjct: 169 CKAHQLRPAILMLEEMANHGLKPDEITFTTLMQGFIEEGDLNGALK 214


>gi|147779268|emb|CAN70089.1| hypothetical protein VITISV_038171 [Vitis vinifera]
          Length = 838

 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 79/343 (23%), Positives = 149/343 (43%), Gaps = 21/343 (6%)

Query: 351 LKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDK 410
           L++++   +  +D+    L   C+  L L+ AEA+  ++ +   P     + A  D + K
Sbjct: 122 LELLEARCVPTEDTYALLLKAYCTSGL-LEKAEAVFAEMRKYGFPPSAVVYNAYIDGLMK 180

Query: 411 ---PERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM 466
               ++A++IF +M R + +P   TY +L +L+G  +  Y    +F ++ S K       
Sbjct: 181 GGDTQKAVEIFERMKRDRCQPSTATYTMLINLYGKASKSYMALKVFHEMRSQK------- 233

Query: 467 DMARNNIQHSHISMKNLLKALGAEGM---IRELIQYFCDSKTPLGTPTYNTVLHSLVEAQ 523
              + NI     +   L+ A   EG+     E+ +   ++        YN ++ +   A 
Sbjct: 234 --CKPNI----CTFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALMEAYSRAG 287

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
             + A EIF  M+  G  P+ A+YNIM+D        + A A+  +M R G  P   ++ 
Sbjct: 288 FPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEVMKRLGITPTMKSHM 347

Query: 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
            L+      G   +   +++ +   GI  D  + N++L      G+ + +E ++  M + 
Sbjct: 348 LLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEKMEEVLTAMEKG 407

Query: 644 KVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
               D ST + + + Y   GF     E  + L  R L  +V T
Sbjct: 408 PYPADISTYNILINIYGRAGFFARMEELFRSLPARNLIPDVVT 450



 Score = 45.8 bits (107), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 79/447 (17%), Positives = 167/447 (37%), Gaps = 83/447 (18%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y L+++A C  G LE+A  +   +  +YG  P   VYN+++    K      A    + M
Sbjct: 136 YALLLKAYCTSGLLEKAEAVFAEM-RKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERM 194

Query: 185 DSRMVGKNEVTYTELLKL-AVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDL 243
                  +  TYT L+ L     K+  A+    E   +    +I +    V +F R    
Sbjct: 195 KRDRCQPSTATYTMLINLYGKASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGLC 254

Query: 244 KSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHAC 303
           + A E  + +    +   +Y                               +++ ++ A 
Sbjct: 255 EKAEEIFEQLQEAGLEPDVY-------------------------------AYNALMEAY 283

Query: 304 GRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQD 363
            R      A ++   MQ +G +P   +Y+  + A        +   V ++M++  + P  
Sbjct: 284 SRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEVMKRLGITPTM 343

Query: 364 STIATLSVECSKALELDLAEALLDQISRC-TNPKPF--SAFLAACDTMDKPERAIKIFAK 420
            +   L    S+A ++   E +++Q+ +    P  F  ++ L     + + E+  ++   
Sbjct: 344 KSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEKMEEVLTA 403

Query: 421 MRQKLRP-DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHIS 479
           M +   P DI TY +L +++G           F++                         
Sbjct: 404 MEKGPYPADISTYNILINIYG-------RAGFFAR------------------------- 431

Query: 480 MKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCG 539
           M+ L ++L A  +I +++             T+ + + +    ++ +R +E+F++M   G
Sbjct: 432 MEELFRSLPARNLIPDVV-------------TWTSRIGAYSRRKQYNRCLEVFEEMIDAG 478

Query: 540 IPPNAATY-NIMIDCCSIIRCFKSASA 565
             P+  T  N+++     +  F   SA
Sbjct: 479 CYPDGGTAKNVLLKVAIFMASFLVGSA 505



 Score = 43.9 bits (102), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 67/341 (19%), Positives = 123/341 (36%), Gaps = 33/341 (9%)

Query: 285 ALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGL 344
             P   V+  ++ D +   G TQ    A ++  +M+    QPS+ TY   I         
Sbjct: 163 GFPPSAVVYNAYIDGLMKGGDTQK---AVEIFERMKRDRCQPSTATYTMLINLYGKASKS 219

Query: 345 RNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRC---TNPKPFSAF 401
              ++V   M+    KP   T   L    ++    + AE + +Q+       +   ++A 
Sbjct: 220 YMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNAL 279

Query: 402 LAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVN----------------- 443
           + A      P  A +IF+ M+     PD  +Y ++   +G                    
Sbjct: 280 MEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEVMKRLGI 339

Query: 444 APYEEGNM-----FSQVDSAKRINAIEMDMARNNIQHSHI---SMKNLLKALGAEGMIRE 495
            P  + +M     +S+     +   I   M ++ I+       SM NL   LG    + E
Sbjct: 340 TPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEKMEE 399

Query: 496 LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCS 555
           ++        P    TYN +++    A    R  E+F+ +    + P+  T+   I   S
Sbjct: 400 VLTAMEKGPYPADISTYNILINIYGRAGFFARMEELFRSLPARNLIPDVVTWTSRIGAYS 459

Query: 556 IIRCFKSASALVSMMVRDGFYPQTMTY-TALIKILLDYGDF 595
             + +     +   M+  G YP   T    L+K+ +    F
Sbjct: 460 RRKQYNRCLEVFEEMIDAGCYPDGGTAKNVLLKVAIFMASF 500


>gi|449433429|ref|XP_004134500.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g16890, mitochondrial-like
           [Cucumis sativus]
          Length = 688

 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 94/421 (22%), Positives = 163/421 (38%), Gaps = 67/421 (15%)

Query: 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
           R++++ +IH   R      A +LM QM+ LG  P+  TY   I    + +      +VL+
Sbjct: 264 RFTYNILIHGVCRLGVVDEALRLMKQMEGLGYFPNVFTYTILIDGFFNAKRAGETFKVLQ 323

Query: 353 IMQQNNLKPQDSTIATL------SVECSKALEL---------DLAEALLDQISRCTNPKP 397
            M++ N+ P ++T+ +L       +   KA EL          + + + D I  C +   
Sbjct: 324 TMKERNVVPNEATMRSLVHGVFRCIAPDKAFELLLEFVERKQGITQLVCDNILYCLSNNS 383

Query: 398 FSA----FLAACDTMDKPERAI----------KIFAKMRQK-LRPDIRTYELLFSLFGNV 442
            ++    F  +  T +     +           +F    Q  ++P   TY  L      +
Sbjct: 384 MASEAVMFXPSSSTFNITLACVLKKLDLKVTCTVFDNCVQSGVKPGFSTYLTL------I 437

Query: 443 NAPYEEGNM----------------------------FSQVDSAKRINAIEMDMARNNIQ 474
            A Y+ G M                              +  S  R + +  D+    I 
Sbjct: 438 EALYKAGKMEIGNRYMDRLINDGLISNIYSYNMVIDCLCKGKSMDRASEMFRDLHNRGIS 497

Query: 475 HSHISMKNLLKALGAEGMI---RELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEI 531
            + ++   L+      G +   +EL++   +S+      T+N+++  L +A +   A   
Sbjct: 498 PNIVTYNTLIGGFCRNGNMDKAQELLEMLLESRFRPDIFTFNSLIDGLCQAHKHENAFGC 557

Query: 532 FKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLD 591
           F +M    +PPN  TYNI+I     I     ++ L+  M   G  P T ++ ALI+    
Sbjct: 558 FTEMVEWDVPPNVITYNILICSFCAIGDVSRSTHLLRQMKLHGIQPDTFSFNALIQGYTG 617

Query: 592 YGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
              F +A  L D +   GI  D   Y  ++K  C+ GR D    I   M +N   PD  T
Sbjct: 618 KNRFQKAEKLFDSMLRLGIQPDNYTYGALIKSLCKSGRHDKAREIFLSMKENGCTPDSYT 677

Query: 652 C 652
           C
Sbjct: 678 C 678



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 68/375 (18%), Positives = 134/375 (35%), Gaps = 33/375 (8%)

Query: 304 GRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQD 363
           GR   +    ++  Q+  LGL P++  Y+  + A++    L       + M  +N  P  
Sbjct: 205 GRLGLANYCVEVFGQIGLLGLNPTTRLYNAVMDALIKSNSLDLAYLKFQQMSSHNCVPDR 264

Query: 364 STIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERA---IKIFAK 420
            T   L     +   +D A  L+ Q+           +    D     +RA    K+   
Sbjct: 265 FTYNILIHGVCRLGVVDEALRLMKQMEGLGYFPNVFTYTILIDGFFNAKRAGETFKVLQT 324

Query: 421 MRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIE------MDMARNNIQ 474
           M+++                  N    E  M S V    R  A +      ++       
Sbjct: 325 MKER------------------NVVPNEATMRSLVHGVFRCIAPDKAFELLLEFVERKQG 366

Query: 475 HSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQ 534
            + +   N+L  L    M  E + +   S T      +N  L  +++  +      +F  
Sbjct: 367 ITQLVCDNILYCLSNNSMASEAVMFXPSSST------FNITLACVLKKLDLKVTCTVFDN 420

Query: 535 MKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGD 594
               G+ P  +TY  +I+        +  +  +  ++ DG      +Y  +I  L     
Sbjct: 421 CVQSGVKPGFSTYLTLIEALYKAGKMEIGNRYMDRLINDGLISNIYSYNMVIDCLCKGKS 480

Query: 595 FDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHF 654
            D A  +   +   GI  +++ YNT++   C  G +D  + ++E + +++ +PD  T + 
Sbjct: 481 MDRASEMFRDLHNRGISPNIVTYNTLIGGFCRNGNMDKAQELLEMLLESRFRPDIFTFNS 540

Query: 655 VFSGYVNCGFHNSAM 669
           +  G      H +A 
Sbjct: 541 LIDGLCQAHKHENAF 555



 Score = 42.4 bits (98), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 54/144 (37%)

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
           +E+F Q+   G+ P    YN ++D          A      M      P   TY  LI  
Sbjct: 214 VEVFGQIGLLGLNPTTRLYNAVMDALIKSNSLDLAYLKFQQMSSHNCVPDRFTYNILIHG 273

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
           +   G  DEAL L+  +   G   +V  Y  ++       R      +++ M +  V P+
Sbjct: 274 VCRLGVVDEALRLMKQMEGLGYFPNVFTYTILIDGFFNAKRAGETFKVLQTMKERNVVPN 333

Query: 649 PSTCHFVFSGYVNCGFHNSAMEAL 672
            +T   +  G   C   + A E L
Sbjct: 334 EATMRSLVHGVFRCIAPDKAFELL 357



 Score = 42.4 bits (98), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 53/267 (19%), Positives = 107/267 (40%), Gaps = 24/267 (8%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           ++  +I A  +     +  + M ++ + GL  + ++Y+  I  +   + +    E+ + +
Sbjct: 432 TYLTLIEALYKAGKMEIGNRYMDRLINDGLISNIYSYNMVIDCLCKGKSMDRASEMFRDL 491

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDK 410
               + P   T  TL     +   +D A+ LL+ +   +  +P    F++ +       K
Sbjct: 492 HNRGISPNIVTYNTLIGGFCRNGNMDKAQELLEMLLE-SRFRPDIFTFNSLIDGLCQAHK 550

Query: 411 PERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
            E A   F +M +  + P++ TY +L                F  +    R   +   M 
Sbjct: 551 HENAFGCFTEMVEWDVPPNVITYNILIC-------------SFCAIGDVSRSTHLLRQMK 597

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP----TYNTVLHSLVEAQES 525
            + IQ    S   L++    +   ++  + F DS   LG      TY  ++ SL ++   
Sbjct: 598 LHGIQPDTFSFNALIQGYTGKNRFQKAEKLF-DSMLRLGIQPDNYTYGALIKSLCKSGRH 656

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMID 552
            +A EIF  MK  G  P++ T ++  D
Sbjct: 657 DKAREIFLSMKENGCTPDSYTCSLFSD 683


>gi|296083865|emb|CBI24253.3| unnamed protein product [Vitis vinifera]
          Length = 582

 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 121/561 (21%), Positives = 208/561 (37%), Gaps = 93/561 (16%)

Query: 127 LMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDS 186
           ++++ LC+ G + EA  LI  +G R  + P +  YN+ +    K   +  A   L  M++
Sbjct: 3   IVLKGLCRNGGVFEAMGLIREMG-RKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEA 61

Query: 187 RMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH-YSLSIFSLRKFVWSFTRLRDLKS 245
                N VT T L+        +    E+ E   K  +   +      +  F    +L  
Sbjct: 62  AGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDR 121

Query: 246 AYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGR 305
             E    M     +GK                   I  N +        ++S ++H   R
Sbjct: 122 GKELFDEM-----LGK------------------GISANVV--------TYSCLVHGLCR 150

Query: 306 TQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDST 365
                 A  ++  M   G+ P   TY G I  +  D    + M++L +M +   +P + T
Sbjct: 151 LGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVT 210

Query: 366 I-ATLSVECSKALELDLAEALLDQISRCTNPK--PFSAFLAACDTMDKPERAIKIFAKM- 421
               LS  C + L +D  + L   I +        ++  +       K + A+K+F  M 
Sbjct: 211 YNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMF 270

Query: 422 --RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHIS 479
                L P++ T+ +L      +    +EG +   V        I   M +     + ++
Sbjct: 271 DNENCLEPNVFTFNML------IGGLCKEGRLTKAV-------KIHRKMVKKGSCGNLVT 317

Query: 480 MKNLLKALGAEGMIRELIQY-----------------------------------FCDSK 504
              LL      G I+E ++                                    FC+ +
Sbjct: 318 YNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMR 377

Query: 505 TPLGTPT---YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFK 561
           T    P    YNT++ SL +     +A  +F++M      P+  ++N MID       F+
Sbjct: 378 THGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQ 437

Query: 562 SASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTIL 621
               L   MV  G  P  +T++ LI  L   G+ DEA + L+ +   G   D L+Y+++L
Sbjct: 438 FVKELQMKMVEMGLRPDALTFSTLINRLSKLGELDEAKSALERMVASGFTPDALVYDSLL 497

Query: 622 KKACEKGRIDVIEFIIEQMHQ 642
           K    KG  D  E II  +HQ
Sbjct: 498 KGLSSKG--DTTE-IINLLHQ 515



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 73/164 (44%)

Query: 513 NTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVR 572
           N VL  L        AM + ++M    + P+  +YN +I+     +  K A  L+  M  
Sbjct: 2   NIVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEA 61

Query: 573 DGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDV 632
            G +P ++T T L+  L   G  DEA+ LL+ +  +G   DV+LY T++   C  G +D 
Sbjct: 62  AGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDR 121

Query: 633 IEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
            + + ++M    +  +  T   +  G    G    A   L  ++
Sbjct: 122 GKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMA 165



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 93/202 (46%), Gaps = 7/202 (3%)

Query: 477 HISMKNLLKALG---AEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFK 533
           +I +K L +  G   A G+IRE+ +    S +P    +YNT+++ L +A++   A+ +  
Sbjct: 2   NIVLKGLCRNGGVFEAMGLIREMGR---KSVSP-DIVSYNTLINGLCKAKKLKEAVGLLL 57

Query: 534 QMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYG 593
           +M+  G  PN+ T   ++D          A  L+  M + GF    + Y  LI    + G
Sbjct: 58  EMEAAGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNG 117

Query: 594 DFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCH 653
           + D    L D +  +GI  +V+ Y+ ++   C  G+      ++  M ++ + PD  T  
Sbjct: 118 NLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYT 177

Query: 654 FVFSGYVNCGFHNSAMEALQVL 675
            +  G    G    AM+ L ++
Sbjct: 178 GLIDGLCKDGRATHAMDLLNLM 199



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/218 (21%), Positives = 90/218 (41%), Gaps = 14/218 (6%)

Query: 467 DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQ 523
           +M R ++    +S   L+  L     ++E +    + +     P   T  T++  L +  
Sbjct: 23  EMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDG 82

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
               AME+ + MK  G   +   Y  +I              L   M+  G     +TY+
Sbjct: 83  RMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYS 142

Query: 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR----IDVIEFIIEQ 639
            L+  L   G + EA  +L+ ++  GI  DV+ Y  ++   C+ GR    +D++  ++E+
Sbjct: 143 CLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEK 202

Query: 640 MHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSM 677
                 +P   T + + SG    G     ++A ++L M
Sbjct: 203 GE----EPSNVTYNVLLSGLCKEGL---VIDAFKILRM 233



 Score = 40.8 bits (94), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 68/330 (20%), Positives = 128/330 (38%), Gaps = 15/330 (4%)

Query: 54  ATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHIL-NYCARSPDPLFVMETWRM 112
            T   ++D LC+  R+  +  LLNL        ++  +++L +   +    +   +  RM
Sbjct: 174 VTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRM 233

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYG-IYPILPVYNSFLGACAKL 171
           M EK    +   Y  +M+ LC  G ++EA  L   + +    + P +  +N  +G   K 
Sbjct: 234 MIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKE 293

Query: 172 HSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK-HYSLSIFSL 230
             +  A      M  +    N VTY  LL   +    +    E+W+  +   +  + F+ 
Sbjct: 294 GRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTY 353

Query: 231 RKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRT------SEGRLRSSRLDIPIPLN 284
              +  F ++R L  A      M    +   L+   T       EG L  ++       N
Sbjct: 354 SILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGN 413

Query: 285 ALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGL 344
           A     ++  SF+ +I    +  +    ++L ++M  +GL+P + T+   I  +     L
Sbjct: 414 ANCEPDII--SFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDALTFSTLINRLSKLGEL 471

Query: 345 RNGMEVLKIMQQNNLKPQ----DSTIATLS 370
                 L+ M  +   P     DS +  LS
Sbjct: 472 DEAKSALERMVASGFTPDALVYDSLLKGLS 501


>gi|224083253|ref|XP_002306972.1| predicted protein [Populus trichocarpa]
 gi|222856421|gb|EEE93968.1| predicted protein [Populus trichocarpa]
          Length = 709

 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 111/516 (21%), Positives = 211/516 (40%), Gaps = 99/516 (19%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y +++ AL +   L EA    + L +R  + P+   YN+ + ACA+ + +  A   +  M
Sbjct: 171 YSILIHALGQSEKLYEA----FLLSQRQNLTPL--TYNALISACARNNDLEKALNLITRM 224

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNL--SAV-----HEIWEDYIKHYSLSIFSLRKFVWSF 237
                  + V Y+ +++ ++ +KN   SA+      EI  D ++   L +      +  F
Sbjct: 225 RQDGYPSDFVNYSLIIR-SLMRKNRVDSAILQKLYREIECDKLE---LDVQLSNDIIVGF 280

Query: 238 TRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFS 297
            +  DL  A E L                   G ++ S L +         +  + W+  
Sbjct: 281 AKAGDLSKALEFL-------------------GVVQGSGLSVKTA-----TLVAVIWALG 316

Query: 298 DVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQN 357
           +    CGRT     AE +  +M+  GL+P +  Y+  +R  V    L++   V+  M+++
Sbjct: 317 N----CGRTVE---AEAIFEEMRDNGLKPRTRAYNALLRGYVKAGLLKDAEFVVSEMERS 369

Query: 358 NLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDKPER 413
            + P + T + L      A   + A  +L ++   +N +P    FS  L++     + ++
Sbjct: 370 GVSPNEQTYSFLIDAYGNAGRWESARIVLKEM-EASNVQPNAYVFSRILSSYRDKGEWQK 428

Query: 414 AIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNN 472
           + ++  +M    +RPD   Y ++   FG  N                             
Sbjct: 429 SFQVLREMENSGVRPDRVFYNVMIDTFGKFNC---------------------------- 460

Query: 473 IQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIF 532
           + H+  +   +L    +EG+  +             T T+NT++     A +  RA E+F
Sbjct: 461 LDHAMATFDRML----SEGIEPD-------------TVTWNTLIDCHCRAGKHDRAEELF 503

Query: 533 KQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDY 592
           ++M   G  P   T+NIMI+       +     L++ M   G  P ++TYT LI I    
Sbjct: 504 EEMMEGGYSPCNTTFNIMINSFGDQERWDDVKNLLAHMRSQGLVPNSVTYTTLIDIYGKS 563

Query: 593 GDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
           G F++A+  LD +   G+     +YN ++    ++G
Sbjct: 564 GRFNDAIECLDDMKAAGLKPSSTMYNALINAYAQRG 599



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 126/310 (40%), Gaps = 23/310 (7%)

Query: 381 LAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRP-DIRTYELLFSLF 439
           L EA L    +   P  ++A ++AC   +  E+A+ +  +MRQ   P D   Y L+    
Sbjct: 184 LYEAFLLSQRQNLTPLTYNALISACARNNDLEKALNLITRMRQDGYPSDFVNYSLIIRSL 243

Query: 440 GNVNAPYEEGNMFSQVDSA---KRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIREL 496
              N          +VDSA   K    IE D    ++Q S+  +    KA G      E 
Sbjct: 244 MRKN----------RVDSAILQKLYREIECDKLELDVQLSNDIIVGFAKA-GDLSKALEF 292

Query: 497 IQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSI 556
           +     S   + T T   V+ +L     +  A  IF++M+  G+ P    YN ++     
Sbjct: 293 LGVVQGSGLSVKTATLVAVIWALGNCGRTVEAEAIFEEMRDNGLKPRTRAYNALLRGYVK 352

Query: 557 IRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLL 616
               K A  +VS M R G  P   TY+ LI    + G ++ A  +L  +    +  +  +
Sbjct: 353 AGLLKDAEFVVSEMERSGVSPNEQTYSFLIDAYGNAGRWESARIVLKEMEASNVQPNAYV 412

Query: 617 YNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFS--GYVNCGFHNSAMEALQV 674
           ++ IL    +KG       ++ +M  + V+PD    + +    G  NC  H  AM     
Sbjct: 413 FSRILSSYRDKGEWQKSFQVLREMENSGVRPDRVFYNVMIDTFGKFNCLDH--AMATFD- 469

Query: 675 LSMRMLCEEV 684
              RML E +
Sbjct: 470 ---RMLSEGI 476



 Score = 48.1 bits (113), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 57/110 (51%), Gaps = 2/110 (1%)

Query: 580 MTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID--VIEFII 637
           +TY ALI       D ++ALNL+  +  +G P D + Y+ I++    K R+D  +++ + 
Sbjct: 199 LTYNALISACARNNDLEKALNLITRMRQDGYPSDFVNYSLIIRSLMRKNRVDSAILQKLY 258

Query: 638 EQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTL 687
            ++  +K++ D    + +  G+   G  + A+E L V+    L  + +TL
Sbjct: 259 REIECDKLELDVQLSNDIIVGFAKAGDLSKALEFLGVVQGSGLSVKTATL 308



 Score = 41.2 bits (95), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 59/262 (22%), Positives = 101/262 (38%), Gaps = 11/262 (4%)

Query: 150 ERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNL 209
           E  G+ P    YN  +    K + + HA    D M S  +  + VT+  L+         
Sbjct: 437 ENSGVRPDRVFYNVMIDTFGKFNCLDHAMATFDRMLSEGIEPDTVTWNTLIDCHCRAGKH 496

Query: 210 SAVHEIWEDYIK-HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRT- 267
               E++E+ ++  YS    +    + SF            L HM +  ++       T 
Sbjct: 497 DRAEELFEEMMEGGYSPCNTTFNIMINSFGDQERWDDVKNLLAHMRSQGLVPNSVTYTTL 556

Query: 268 SEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHAC--GRTQNSGLAEQLMLQMQSL--- 322
            +   +S R +  I    L  MK      S  ++          GL+EQ +   +++   
Sbjct: 557 IDIYGKSGRFNDAI--ECLDDMKAAGLKPSSTMYNALINAYAQRGLSEQAVSAFRAMRVD 614

Query: 323 GLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLA 382
           GL+PS    +  I A   DR       VL+ M++N+LKP   T  TL     +  + D  
Sbjct: 615 GLKPSLLALNSLINAFGEDRRDAEAFTVLQYMKENDLKPDVVTYTTLMKALIRVEKFDKV 674

Query: 383 EALLDQ--ISRCTNPKPFSAFL 402
            ++ ++  +S CT  +   A L
Sbjct: 675 PSVYEEMILSGCTPDRKARAML 696


>gi|449438705|ref|XP_004137128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 88/370 (23%), Positives = 158/370 (42%), Gaps = 53/370 (14%)

Query: 315 LMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECS 374
           L  +M  L ++ S +T++  I  +  +  L+   + +  M+ + +KP   T  T+     
Sbjct: 208 LYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYC 267

Query: 375 KALELDLAEALLDQISRCT-NPKPFS--AFLAACDTMDKPERAIKIFAKMRQK-LRPDIR 430
            +  ++ A+A+L  + R    P  F+  + ++      + E A KIF +M QK LRP   
Sbjct: 268 SSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAV 327

Query: 431 TYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAE 490
            Y  L   F N      +GN+    D A   +A + +M +  I  +              
Sbjct: 328 IYNTLIDGFCN------KGNL----DMA---SAYKDEMLKKGISPT-------------- 360

Query: 491 GMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIM 550
                               TYN+++H+L   Q +  A  + K+++  GI P+A TYNI+
Sbjct: 361 ------------------MSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNIL 402

Query: 551 IDCCSIIRCFKSASALV--SMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLE 608
           I+     RC  +  A +    M+  G  P   TYT+L+ +L       EA +L   ++ E
Sbjct: 403 IN--GYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSE 460

Query: 609 GIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSA 668
           G+  DV+++N ++   C    +     +++ M + KV PD  T + +  G+   G    A
Sbjct: 461 GVLPDVIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEA 520

Query: 669 MEALQVLSMR 678
            E    +  R
Sbjct: 521 RELFDEMKRR 530



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 112/544 (20%), Positives = 214/544 (39%), Gaps = 59/544 (10%)

Query: 127 LMMQALCKGGYLEEASNLIYFLG---ERYGIYPILPVYNSFLGACAKLHSMVHANLCLDL 183
           L+ QAL  GG       +  FL    +R G    + V++  + +C  ++    A  C   
Sbjct: 119 LLKQAL-GGGTTNSIREIFEFLAASRDRLGFKSSI-VFDYLIKSCCDMNRADEAFECFYT 176

Query: 184 MDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDL 243
           M  + V     T   LL L +    L+     W  Y + +               RLR +
Sbjct: 177 MKEKGVLPTIETCNSLLSLFL---KLNRTEAAWVLYAEMF---------------RLR-I 217

Query: 244 KSAYETLQHMV-ALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHA 302
           KS+  T   M+  L   GKL   +   G + +S +   I             +++ ++H 
Sbjct: 218 KSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNI------------VTYNTIVHG 265

Query: 303 CGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQ 362
              +     A+ ++  M+   ++P S TY   I  +     L    ++ + M Q  L+P 
Sbjct: 266 YCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPS 325

Query: 363 DSTIATL-SVECSKALELDLAEALLDQ-ISRCTNP--KPFSAFLAACDTMDKPERAIKIF 418
                TL    C+K   LD+A A  D+ + +  +P    +++ + A     + + A  + 
Sbjct: 326 AVIYNTLIDGFCNKG-NLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMI 384

Query: 419 AKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSH 477
            ++++K + PD  TY +L              N + +  +AK+   +  +M  + I+ + 
Sbjct: 385 KEIQEKGISPDAITYNILI-------------NGYCRCANAKKAFLLHDEMLASGIKPTK 431

Query: 478 ISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPT---YNTVLHSLVEAQESHRAMEIFKQ 534
            +  +LL  L  +  ++E    F    +    P    +N ++           A E+ K 
Sbjct: 432 KTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDVIMFNALIDGHCSNSNVKGAFELLKD 491

Query: 535 MKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGD 594
           M    +PP+  T+N ++         + A  L   M R G  P  +++  LI      GD
Sbjct: 492 MDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGD 551

Query: 595 FDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHF 654
             +A  + + +   G    VL YN +++  C+    D+ E ++++M    + PD +T   
Sbjct: 552 IKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEGDLAEELLKEMVSKGMTPDDTTYFT 611

Query: 655 VFSG 658
           +  G
Sbjct: 612 LIEG 615



 Score = 68.9 bits (167), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 81/179 (45%), Gaps = 3/179 (1%)

Query: 488 GAEGMIRELIQYFCDSKTPLG---TPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNA 544
           G    IRE+ ++   S+  LG   +  ++ ++ S  +   +  A E F  MK  G+ P  
Sbjct: 127 GTTNSIREIFEFLAASRDRLGFKSSIVFDYLIKSCCDMNRADEAFECFYTMKEKGVLPTI 186

Query: 545 ATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDL 604
            T N ++     +   ++A  L + M R        T+  +I +L   G   +A + +  
Sbjct: 187 ETCNSLLSLFLKLNRTEAAWVLYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGH 246

Query: 605 VSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
           +   G+  +++ YNTI+   C  GR++  + I+  M + K++PD  T   + SG    G
Sbjct: 247 METSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQG 305



 Score = 56.2 bits (134), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 67/153 (43%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           T N++L   ++   +  A  ++ +M    I  +  T+NIMI+        K A   V  M
Sbjct: 188 TCNSLLSLFLKLNRTEAAWVLYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHM 247

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
              G  P  +TY  ++      G  + A  +L  +  + I  D   Y +++   C++GR+
Sbjct: 248 ETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRL 307

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
           +    I E+M Q  ++P     + +  G+ N G
Sbjct: 308 EEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKG 340


>gi|293334951|ref|NP_001170632.1| uncharacterized protein LOC100384682 [Zea mays]
 gi|238006488|gb|ACR34279.1| unknown [Zea mays]
 gi|413925463|gb|AFW65395.1| hypothetical protein ZEAMMB73_565010 [Zea mays]
          Length = 462

 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 82/373 (21%), Positives = 147/373 (39%), Gaps = 51/373 (13%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           AE +++    LGL P   TY+  + A     GL  G+ V+  M++  ++P   T      
Sbjct: 31  AESVLVDAIRLGLPPDVVTYNTLLAAYCRVDGLDAGLAVVHRMREAGVRPDAVT------ 84

Query: 372 ECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIR 430
                                     +++ +   D      RA+ +F +M R  + PD  
Sbjct: 85  --------------------------YNSLITGADRSGLTVRALDLFDEMLRSGVAPDSW 118

Query: 431 TYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAE 490
           +Y  L         P          + A R+ A   DMA   +     +   LL  L   
Sbjct: 119 SYNALMHCLFRSGHP----------EHAYRVFA---DMADRGVAPCATTYNTLLDGLLKA 165

Query: 491 GMIR---ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATY 547
           G +     + +Y   +  P+G  TYNT+++ L ++ +   A  + K++      PNA TY
Sbjct: 166 GHVTNAFRMFRYLQRAGLPVGIVTYNTMINGLCKSGKVGYARMVLKELGRTEHAPNAVTY 225

Query: 548 NIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSL 607
             ++ CC     F+        ++  G+      YT +I  L+  G   EA    +L+  
Sbjct: 226 TTVMKCCFRYGRFEQGLETFLSLLEGGYISDAFPYTTVISALVKKGRMQEANTYCELMIQ 285

Query: 608 EGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNS 667
            G   D   YNT++   C++G+I+    ++  M +  ++ D  T   + +G    G   +
Sbjct: 286 SGSTLDNACYNTLIHLRCQEGKINDAFELLNMMEEGGLESDEYTFSILVNGLCKMGQIEA 345

Query: 668 AMEALQVLSMRML 680
           A +  Q+ SM M+
Sbjct: 346 AEK--QIWSMEMM 356



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 64/170 (37%)

Query: 506 PLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASA 565
            L T   N  L SL       RA  +       G+PP+  TYN ++     +    +  A
Sbjct: 9   ALSTRLMNVGLASLCRGGWLDRAESVLVDAIRLGLPPDVVTYNTLLAAYCRVDGLDAGLA 68

Query: 566 LVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKAC 625
           +V  M   G  P  +TY +LI      G    AL+L D +   G+  D   YN ++    
Sbjct: 69  VVHRMREAGVRPDAVTYNSLITGADRSGLTVRALDLFDEMLRSGVAPDSWSYNALMHCLF 128

Query: 626 EKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
             G  +    +   M    V P  +T + +  G +  G   +A    + L
Sbjct: 129 RSGHPEHAYRVFADMADRGVAPCATTYNTLLDGLLKAGHVTNAFRMFRYL 178


>gi|46091165|dbj|BAD13711.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 101/470 (21%), Positives = 188/470 (40%), Gaps = 20/470 (4%)

Query: 227 IFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLY-----INRTSEGRLRSSRLDIPI 281
           + S    +  F +  DL  AY T   M+   ++  +      I    + +     +++  
Sbjct: 199 VVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLT 258

Query: 282 PLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSD 341
            +    VM   R +++ ++H    +     A   + +M S G++P   TY+  +  +  +
Sbjct: 259 SMVKNGVMPNCR-TYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKN 317

Query: 342 RGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT---NPKPF 398
                  ++   M +  LKP+ +T  TL    +    L     LLD + R     N   F
Sbjct: 318 GRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVF 377

Query: 399 SAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDS 457
           S  + A     K ++A+ +F+KMRQ+ L PD  TY  +  +        +    F Q+  
Sbjct: 378 SILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMID 437

Query: 458 AKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLH 517
            +       ++  N++ HS        KA       +ELI    D    L T  +N+++ 
Sbjct: 438 ERLSPG---NIVYNSLIHSLCIFDKWDKA-------KELILEMLDRGICLDTIFFNSIID 487

Query: 518 SLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYP 577
           S  +      + ++F  M   G+ P+  TY+ +ID   +      A+ L++ MV  G  P
Sbjct: 488 SHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKP 547

Query: 578 QTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFII 637
             +TY  LI         ++AL L   +   G+  D++ YN IL+   +  R    + + 
Sbjct: 548 DCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELY 607

Query: 638 EQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTL 687
             + ++  Q + ST + +  G       + A+   Q L +  L  E  T 
Sbjct: 608 VGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTF 657



 Score = 70.9 bits (172), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 79/171 (46%), Gaps = 2/171 (1%)

Query: 495 ELIQYFCD--SKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID 552
           EL+Q   D     P    +Y TV++   +  +  +A   + +M   GI PN  TY+ +I 
Sbjct: 183 ELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIA 242

Query: 553 CCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPH 612
                +    A  +++ MV++G  P   TY +++      G   EA+  L  +  +G+  
Sbjct: 243 ALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEP 302

Query: 613 DVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
           DV+ YN+++   C+ GR      + + M +  ++P+ +T   +  GY   G
Sbjct: 303 DVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKG 353



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/215 (23%), Positives = 92/215 (42%), Gaps = 6/215 (2%)

Query: 478 ISMKNLLKALGAEGMIRELIQYFCDSKTPLG-TP---TYNTVLHSLVEAQESHRAMEIFK 533
           I+   +LK L A+    + +       T LG  P   +YN +L  L +   S  A+E+ +
Sbjct: 127 IAFTPMLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDDNRSQEALELLQ 186

Query: 534 QMKTCG--IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLD 591
            M   G   PP+  +Y  +I+          A      M+  G  P  +TY+++I  L  
Sbjct: 187 MMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCK 246

Query: 592 YGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
               D+A+ +L  +   G+  +   YN+I+   C  G+       +++MH + V+PD  T
Sbjct: 247 AQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVT 306

Query: 652 CHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
            + +       G    A +    ++ R L  E++T
Sbjct: 307 YNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITT 341



 Score = 59.3 bits (142), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 114/552 (20%), Positives = 215/552 (38%), Gaps = 68/552 (12%)

Query: 107 METWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERY--GIYPILPVYNSF 164
           ME    M +  +  N + Y  ++   C  G  +EA   I FL + +  G+ P +  YNS 
Sbjct: 254 MEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEA---IGFLKKMHSDGVEPDVVTYNSL 310

Query: 165 LGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK--- 221
           +    K      A    D M  R +     TY  LL+    +  L  +H + +  ++   
Sbjct: 311 MDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGI 370

Query: 222 ---HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLD 278
              HY  SI                         + A A  GK+        ++R   L+
Sbjct: 371 HPNHYVFSIL------------------------ICAYAKQGKVDQAMLVFSKMRQQGLN 406

Query: 279 IPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAI 338
            P  +    V+ +L  S        GR ++   A +   QM    L P +  Y+  I ++
Sbjct: 407 -PDTVTYGTVIGILCKS--------GRVED---AMRYFEQMIDERLSPGNIVYNSLIHSL 454

Query: 339 -VSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP 397
            + D+  +    +L+++ +          + +   C +   ++ +E L D + R    KP
Sbjct: 455 CIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIE-SEKLFDLMVR-IGVKP 512

Query: 398 ----FSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMF 452
               +S  +       K + A K+ A M    ++PD  TY  L + +  ++   +   +F
Sbjct: 513 DIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLF 572

Query: 453 SQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTY 512
            +++S+     +  D+   NI    +       A       +EL     +S T L   TY
Sbjct: 573 REMESS----GVSPDIITYNIILQGLFQTRRTAA------AKELYVGITESGTQLELSTY 622

Query: 513 NTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVR 572
           N +LH L +   +  A+ +F+ +    +     T+NIMI     +     A  L + +  
Sbjct: 623 NIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSA 682

Query: 573 DGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG---R 629
           +G  P   TY+ + + L++ G  +E  +L   +   G   +  + N+I++K  ++G   R
Sbjct: 683 NGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITR 742

Query: 630 IDVIEFIIEQMH 641
                F+I++ H
Sbjct: 743 AGTYLFMIDEKH 754


>gi|356574874|ref|XP_003555568.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Glycine max]
          Length = 576

 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 98/390 (25%), Positives = 170/390 (43%), Gaps = 57/390 (14%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A +L+ +M S GLQP  +TY+  +R +   RGL +     + +   N  P  +    L  
Sbjct: 235 AMRLLDEMMSRGLQPDMYTYNVIVRGMCK-RGLVD--RAFEFVSNLNTTPSLNLYNLLLK 291

Query: 372 ECSKALELDLAEALL-DQISRCTNPK--PFSAFLAACDTMDKPERAIKIFAKMRQK-LRP 427
                   +  E L+ D I +   P    +S  +++     K   A+ +   M++K L P
Sbjct: 292 GLLNEGRWEAGERLMSDMIVKGCEPNIVTYSVLISSLCRDGKAGEAVDVLRVMKEKGLNP 351

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL 487
           D   Y+ L S F       +EG               ++D+A              +  +
Sbjct: 352 DAYCYDPLISAF------CKEG---------------KVDLA-----------IGFVDDM 379

Query: 488 GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATY 547
            + G + +++ Y             NT++ SL +   +  A+ IFK+++  G PPNA++Y
Sbjct: 380 ISAGWLPDIVNY-------------NTIMGSLCKKGRADEALNIFKKLEEVGCPPNASSY 426

Query: 548 NIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL-DLVS 606
           N M            A  ++  M+ +G  P  +TY +LI  L   G  DEA+ LL D+  
Sbjct: 427 NTMFGALWSSGDKIRALTMILEMLSNGVDPDRITYNSLISSLCRDGMVDEAIGLLVDMER 486

Query: 607 LEGIPHDVLLYNTILKKACEKGRI-DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFH 665
            E  P  V+ YN +L   C+  RI D IE ++  M  N  QP+ +T   +  G    G+ 
Sbjct: 487 TEWQPT-VISYNIVLLGLCKAHRIVDAIE-VLAVMVDNGCQPNETTYTLLVEGVGYAGWR 544

Query: 666 NSAME-ALQVLSMRMLCEEVSTLEEKRSDF 694
           + A+E A  ++SM  + +++    +K++ F
Sbjct: 545 SYAVELAKSLVSMNAISQDLFRRLQKQNHF 574



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 76/160 (47%), Gaps = 7/160 (4%)

Query: 480 MKNLLKALGAEGMIR--ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKT 537
           +K L  +   E  +R  E+++ + D  +      YN V+     +     A  +  +MK 
Sbjct: 119 IKGLFTSKRTEKAVRVMEILEQYGDPDSF----AYNAVISGFCRSDRFDAANRVILRMKY 174

Query: 538 CGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDE 597
            G  P+  TYNI+I           A  ++  ++ D   P  +TYT LI+  + +G  D+
Sbjct: 175 RGFSPDVVTYNILIGSLCARGKLDLALKVMDQLLEDNCNPTVITYTILIEATIIHGSIDD 234

Query: 598 ALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID-VIEFI 636
           A+ LLD +   G+  D+  YN I++  C++G +D   EF+
Sbjct: 235 AMRLLDEMMSRGLQPDMYTYNVIVRGMCKRGLVDRAFEFV 274



 Score = 60.1 bits (144), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 73/355 (20%), Positives = 146/355 (41%), Gaps = 28/355 (7%)

Query: 318 QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKAL 377
           QM   G +P        I+ + + +     + V++I++Q       +  A +S  C ++ 
Sbjct: 102 QMVKRGYKPDVILCTKLIKGLFTSKRTEKAVRVMEILEQYGDPDSFAYNAVISGFC-RSD 160

Query: 378 ELDLAEALLDQIS-RCTNPK--PFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYE 433
             D A  ++ ++  R  +P    ++  + +     K + A+K+  ++      P + TY 
Sbjct: 161 RFDAANRVILRMKYRGFSPDVVTYNILIGSLCARGKLDLALKVMDQLLEDNCNPTVITYT 220

Query: 434 LLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMI 493
           +L           E   +   +D A R+  ++  M+R  +Q    +   +++ +   G++
Sbjct: 221 ILI----------EATIIHGSIDDAMRL--LDEMMSRG-LQPDMYTYNVIVRGMCKRGLV 267

Query: 494 RELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHR---AMEIFKQMKTCGIPPNAATYNIM 550
               ++  +  T   TP+ N     L       R      +   M   G  PN  TY+++
Sbjct: 268 DRAFEFVSNLNT---TPSLNLYNLLLKGLLNEGRWEAGERLMSDMIVKGCEPNIVTYSVL 324

Query: 551 IDCCSIIRCFKSASAL--VSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLE 608
           I   S+ R  K+  A+  + +M   G  P    Y  LI      G  D A+  +D +   
Sbjct: 325 IS--SLCRDGKAGEAVDVLRVMKEKGLNPDAYCYDPLISAFCKEGKVDLAIGFVDDMISA 382

Query: 609 GIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
           G   D++ YNTI+   C+KGR D    I +++ +    P+ S+ + +F    + G
Sbjct: 383 GWLPDIVNYNTIMGSLCKKGRADEALNIFKKLEEVGCPPNASSYNTMFGALWSSG 437



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 67/149 (44%), Gaps = 4/149 (2%)

Query: 522 AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMT 581
            +++ R MEI +Q       P++  YN +I        F +A+ ++  M   GF P  +T
Sbjct: 128 TEKAVRVMEILEQYGD----PDSFAYNAVISGFCRSDRFDAANRVILRMKYRGFSPDVVT 183

Query: 582 YTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMH 641
           Y  LI  L   G  D AL ++D +  +     V+ Y  +++     G ID    ++++M 
Sbjct: 184 YNILIGSLCARGKLDLALKVMDQLLEDNCNPTVITYTILIEATIIHGSIDDAMRLLDEMM 243

Query: 642 QNKVQPDPSTCHFVFSGYVNCGFHNSAME 670
              +QPD  T + +  G    G  + A E
Sbjct: 244 SRGLQPDMYTYNVIVRGMCKRGLVDRAFE 272



 Score = 42.7 bits (99), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 37/176 (21%), Positives = 76/176 (43%), Gaps = 11/176 (6%)

Query: 516 LHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCF----KSASALVSMMV 571
           L+ L +  +   A+   +QM   G  P+      +I C  +I+      ++  A+  M +
Sbjct: 84  LNRLCKTGKYTEALYFLEQMVKRGYKPD------VILCTKLIKGLFTSKRTEKAVRVMEI 137

Query: 572 RDGFY-PQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
            + +  P +  Y A+I        FD A  ++  +   G   DV+ YN ++   C +G++
Sbjct: 138 LEQYGDPDSFAYNAVISGFCRSDRFDAANRVILRMKYRGFSPDVVTYNILIGSLCARGKL 197

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           D+   +++Q+ ++   P   T   +    +  G  + AM  L  +  R L  ++ T
Sbjct: 198 DLALKVMDQLLEDNCNPTVITYTILIEATIIHGSIDDAMRLLDEMMSRGLQPDMYT 253


>gi|356513139|ref|XP_003525271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g21222-like [Glycine max]
          Length = 621

 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 88/432 (20%), Positives = 185/432 (42%), Gaps = 24/432 (5%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ ++ A  R +       L+ ++   G++P S   +  I A      +   M++ + M
Sbjct: 97  TYTTLVAALTRQKRFKSIPALLSKVADNGMKPDSILLNAMINAFSDSGKVDEAMKIFQKM 156

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDK 410
           ++   KP  ST  TL            +  LL+ + +  N KP    ++  + A  T  K
Sbjct: 157 KEYGCKPTTSTYNTLIKGFGIVGRPYESMKLLEMMGQDENVKPNDRTYNILIQAWCTKKK 216

Query: 411 PERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
            E A  +  KM    ++PD+ TY  +                ++Q    ++   + + M 
Sbjct: 217 LEEAWNVLHKMVASGIQPDVVTYNTM-------------ARAYAQNGETEKAERLILKMQ 263

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESH 526
            N ++ +  +   ++     EG + E +++    K     P    +N+++   ++A +++
Sbjct: 264 YNKVKPNERTCGIIISGYCKEGNMTEALRFLYRMKELGVHPNPVVFNSLIKGYLDATDTN 323

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
              E    M+  GI P+  T++ +++  S      +   + + MV+ G  P    Y+ L 
Sbjct: 324 GVDEALTLMEEFGIKPDVVTFSTIMNAWSSAGLMDNCEEIFNDMVKAGIEPDIHAYSILA 383

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
           K  +  G   +A +LL  +S  G+  +V+++ TI+   C  G++D    + E+MH+    
Sbjct: 384 KGYVRAGQPRKAESLLTSMSKYGVQTNVVIFTTIISGWCAAGKMDRAFSLCEKMHEMGTS 443

Query: 647 PDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDFEDLILAEDSEAE 706
           P+  T   +  GY        A E L  +  R +  E+ST++     +  + L +++   
Sbjct: 444 PNLKTYETLIWGYGEAKQPWKAEEILSTMEERGVVPEMSTMQLVADAWRAIGLFKEA--- 500

Query: 707 SRILQFCEDSNE 718
           +RIL   E+ +E
Sbjct: 501 NRILNGSEEESE 512



 Score = 57.0 bits (136), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 68/146 (46%), Gaps = 1/146 (0%)

Query: 515 VLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDG 574
           ++++L+   + H A  +F  +   G  P   TY  ++   +  + FKS  AL+S +  +G
Sbjct: 66  LMNALIGKGKPHEAQAVFHNLTEEGHKPTLITYTTLVAALTRQKRFKSIPALLSKVADNG 125

Query: 575 FYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIE 634
             P ++   A+I    D G  DEA+ +   +   G       YNT++K     GR     
Sbjct: 126 MKPDSILLNAMINAFSDSGKVDEAMKIFQKMKEYGCKPTTSTYNTLIKGFGIVGRPYESM 185

Query: 635 FIIEQMHQNK-VQPDPSTCHFVFSGY 659
            ++E M Q++ V+P+  T + +   +
Sbjct: 186 KLLEMMGQDENVKPNDRTYNILIQAW 211


>gi|115482730|ref|NP_001064958.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|41152691|dbj|BAD08215.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113639567|dbj|BAF26872.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|215693996|dbj|BAG89195.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 794

 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 101/470 (21%), Positives = 188/470 (40%), Gaps = 20/470 (4%)

Query: 227 IFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLY-----INRTSEGRLRSSRLDIPI 281
           + S    +  F +  DL  AY T   M+   ++  +      I    + +     +++  
Sbjct: 199 VVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLT 258

Query: 282 PLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSD 341
            +    VM   R +++ ++H    +     A   + +M S G++P   TY+  +  +  +
Sbjct: 259 SMVKNGVMPNCR-TYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKN 317

Query: 342 RGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT---NPKPF 398
                  ++   M +  LKP+ +T  TL    +    L     LLD + R     N   F
Sbjct: 318 GRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVF 377

Query: 399 SAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDS 457
           S  + A     K ++A+ +F+KMRQ+ L PD  TY  +  +        +    F Q+  
Sbjct: 378 SILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMID 437

Query: 458 AKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLH 517
            +       ++  N++ HS        KA       +ELI    D    L T  +N+++ 
Sbjct: 438 ERLSPG---NIVYNSLIHSLCIFDKWDKA-------KELILEMLDRGICLDTIFFNSIID 487

Query: 518 SLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYP 577
           S  +      + ++F  M   G+ P+  TY+ +ID   +      A+ L++ MV  G  P
Sbjct: 488 SHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKP 547

Query: 578 QTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFII 637
             +TY  LI         ++AL L   +   G+  D++ YN IL+   +  R    + + 
Sbjct: 548 DCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELY 607

Query: 638 EQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTL 687
             + ++  Q + ST + +  G       + A+   Q L +  L  E  T 
Sbjct: 608 VGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTF 657



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 79/171 (46%), Gaps = 2/171 (1%)

Query: 495 ELIQYFCD--SKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID 552
           EL+Q   D     P    +Y TV++   +  +  +A   + +M   GI PN  TY+ +I 
Sbjct: 183 ELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIA 242

Query: 553 CCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPH 612
                +    A  +++ MV++G  P   TY +++      G   EA+  L  +  +G+  
Sbjct: 243 ALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEP 302

Query: 613 DVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
           DV+ YN+++   C+ GR      + + M +  ++P+ +T   +  GY   G
Sbjct: 303 DVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKG 353



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 92/215 (42%), Gaps = 6/215 (2%)

Query: 478 ISMKNLLKALGAEGMIRELIQYFCDSKTPLG-TP---TYNTVLHSLVEAQESHRAMEIFK 533
           I+   LLK L A+    + +       T LG  P   +YN +L  L +   S  A+E+ +
Sbjct: 127 IAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQ 186

Query: 534 QMKTCG--IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLD 591
            M   G   PP+  +Y  +I+          A      M+  G  P  +TY+++I  L  
Sbjct: 187 MMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCK 246

Query: 592 YGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
               D+A+ +L  +   G+  +   YN+I+   C  G+       +++MH + V+PD  T
Sbjct: 247 AQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVT 306

Query: 652 CHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
            + +       G    A +    ++ R L  E++T
Sbjct: 307 YNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITT 341



 Score = 59.3 bits (142), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 114/552 (20%), Positives = 215/552 (38%), Gaps = 68/552 (12%)

Query: 107 METWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERY--GIYPILPVYNSF 164
           ME    M +  +  N + Y  ++   C  G  +EA   I FL + +  G+ P +  YNS 
Sbjct: 254 MEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEA---IGFLKKMHSDGVEPDVVTYNSL 310

Query: 165 LGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK--- 221
           +    K      A    D M  R +     TY  LL+    +  L  +H + +  ++   
Sbjct: 311 MDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGI 370

Query: 222 ---HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLD 278
              HY  SI                         + A A  GK+        ++R   L+
Sbjct: 371 HPNHYVFSIL------------------------ICAYAKQGKVDQAMLVFSKMRQQGLN 406

Query: 279 IPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAI 338
            P  +    V+ +L  S        GR ++   A +   QM    L P +  Y+  I ++
Sbjct: 407 -PDTVTYGTVIGILCKS--------GRVED---AMRYFEQMIDERLSPGNIVYNSLIHSL 454

Query: 339 -VSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP 397
            + D+  +    +L+++ +          + +   C +   ++ +E L D + R    KP
Sbjct: 455 CIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIE-SEKLFDLMVR-IGVKP 512

Query: 398 ----FSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMF 452
               +S  +       K + A K+ A M    ++PD  TY  L + +  ++   +   +F
Sbjct: 513 DIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLF 572

Query: 453 SQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTY 512
            +++S+     +  D+   NI    +       A       +EL     +S T L   TY
Sbjct: 573 REMESS----GVSPDIITYNIILQGLFQTRRTAA------AKELYVGITESGTQLELSTY 622

Query: 513 NTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVR 572
           N +LH L +   +  A+ +F+ +    +     T+NIMI     +     A  L + +  
Sbjct: 623 NIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSA 682

Query: 573 DGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG---R 629
           +G  P   TY+ + + L++ G  +E  +L   +   G   +  + N+I++K  ++G   R
Sbjct: 683 NGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITR 742

Query: 630 IDVIEFIIEQMH 641
                F+I++ H
Sbjct: 743 AGTYLFMIDEKH 754


>gi|299469706|emb|CBN76560.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 915

 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 72/340 (21%), Positives = 132/340 (38%), Gaps = 50/340 (14%)

Query: 314 QLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVEC 373
           +L+ +M+  G  P+S  Y   I A       R+ M +L  M+++ + P D  +       
Sbjct: 348 ELIQEMRREGPSPNSQCYASAITACARAHDPRSAMRLLADMREDGVPPNDVVL------- 400

Query: 374 SKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ--KLRPDIRT 431
                                    +A + AC   D P+ A+K+   M +   ++P+  T
Sbjct: 401 -------------------------NAAVDACGKGDAPDEALKLLRGMEKAYGVKPNTVT 435

Query: 432 YELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEG 491
           +    S               S+   A+   A+  +M+   ++  + S    ++   A G
Sbjct: 436 FNSAIS-------------GLSRAGRAREAKALLNEMSERGLKPDNFSFNAAMQGFAAAG 482

Query: 492 MIRELIQYFCDSKT---PLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYN 548
             R       + K+    +   +Y T + +  +A +   A+++ K+M+  G+ PN   YN
Sbjct: 483 DPRNTASLSDEMKSRGIGMDVVSYGTAVSACAKAGDVKGALKLLKEMQEAGVEPNTVVYN 542

Query: 549 IMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLE 608
             +D C      K A  L+  M   G      +YT  I      GD D+AL  L+ +S E
Sbjct: 543 SALDACGRAGKPKVAEKLLRKMGETGVVRDATSYTGAIVACSRNGDGDKALEWLETMSKE 602

Query: 609 GIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
           GI  + + YN  +      G     E+++ +M    V P+
Sbjct: 603 GIAPEAITYNYAMAACGRSGNDRQAEWLLNEMRGQGVTPN 642



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 65/351 (18%), Positives = 133/351 (37%), Gaps = 38/351 (10%)

Query: 90  FFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLG 149
           +   +  CAR+ DP   M     M E  +  N+      + A  KG   +EA  L+  + 
Sbjct: 365 YASAITACARAHDPRSAMRLLADMREDGVPPNDVVLNAAVDACGKGDAPDEALKLLRGME 424

Query: 150 ERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLK---LAVWQ 206
           + YG+ P    +NS +   ++      A   L+ M  R +  +  ++   ++    A   
Sbjct: 425 KAYGVKPNTVTFNSAISGLSRAGRAREAKALLNEMSERGLKPDNFSFNAAMQGFAAAGDP 484

Query: 207 KNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINR 266
           +N +++ +  E   +   + + S    V +  +  D+K A + L+ M    +     +  
Sbjct: 485 RNTASLSD--EMKSRGIGMDVVSYGTAVSACAKAGDVKGALKLLKEMQEAGVEPNTVV-- 540

Query: 267 TSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQP 326
                                        ++  + ACGR     +AE+L+ +M   G+  
Sbjct: 541 -----------------------------YNSALDACGRAGKPKVAEKLLRKMGETGVVR 571

Query: 327 SSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALL 386
            + +Y G I A   +      +E L+ M +  + P+  T       C ++     AE LL
Sbjct: 572 DATSYTGAIVACSRNGDGDKALEWLETMSKEGIAPEAITYNYAMAACGRSGNDRQAEWLL 631

Query: 387 DQI-SRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLF 436
           +++  +   P   S + AA   + K  R   + + + +  R  +   E+ +
Sbjct: 632 NEMRGQGVTPNRIS-YSAAMFALGKAGRLPDVLSLLEEMHREGVEADEVTY 681


>gi|222613080|gb|EEE51212.1| hypothetical protein OsJ_32033 [Oryza sativa Japonica Group]
          Length = 1144

 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 101/470 (21%), Positives = 188/470 (40%), Gaps = 20/470 (4%)

Query: 227 IFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLY-----INRTSEGRLRSSRLDIPI 281
           + S    +  F +  DL  AY T   M+   ++  +      I    + +     +++  
Sbjct: 199 VVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLT 258

Query: 282 PLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSD 341
            +    VM   R +++ ++H    +     A   + +M S G++P   TY+  +  +  +
Sbjct: 259 SMVKNGVMPNCR-TYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKN 317

Query: 342 RGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT---NPKPF 398
                  ++   M +  LKP+ +T  TL    +    L     LLD + R     N   F
Sbjct: 318 GRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVF 377

Query: 399 SAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDS 457
           S  + A     K ++A+ +F+KMRQ+ L PD  TY  +  +        +    F Q+  
Sbjct: 378 SILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMID 437

Query: 458 AKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLH 517
            +       ++  N++ HS        KA       +ELI    D    L T  +N+++ 
Sbjct: 438 ERLSPG---NIVYNSLIHSLCIFDKWDKA-------KELILEMLDRGICLDTIFFNSIID 487

Query: 518 SLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYP 577
           S  +      + ++F  M   G+ P+  TY+ +ID   +      A+ L++ MV  G  P
Sbjct: 488 SHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKP 547

Query: 578 QTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFII 637
             +TY  LI         ++AL L   +   G+  D++ YN IL+   +  R    + + 
Sbjct: 548 DCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELY 607

Query: 638 EQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTL 687
             + ++  Q + ST + +  G       + A+   Q L +  L  E  T 
Sbjct: 608 VGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTF 657



 Score = 72.4 bits (176), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 79/171 (46%), Gaps = 2/171 (1%)

Query: 495 ELIQYFCD--SKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID 552
           EL+Q   D     P    +Y TV++   +  +  +A   + +M   GI PN  TY+ +I 
Sbjct: 183 ELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIA 242

Query: 553 CCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPH 612
                +    A  +++ MV++G  P   TY +++      G   EA+  L  +  +G+  
Sbjct: 243 ALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEP 302

Query: 613 DVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
           DV+ YN+++   C+ GR      + + M +  ++P+ +T   +  GY   G
Sbjct: 303 DVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKG 353



 Score = 63.2 bits (152), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 92/215 (42%), Gaps = 6/215 (2%)

Query: 478 ISMKNLLKALGAEGMIRELIQYFCDSKTPLG-TP---TYNTVLHSLVEAQESHRAMEIFK 533
           I+   LLK L A+    + +       T LG  P   +YN +L  L +   S  A+E+ +
Sbjct: 127 IAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQ 186

Query: 534 QMKTCG--IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLD 591
            M   G   PP+  +Y  +I+          A      M+  G  P  +TY+++I  L  
Sbjct: 187 MMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCK 246

Query: 592 YGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
               D+A+ +L  +   G+  +   YN+I+   C  G+       +++MH + V+PD  T
Sbjct: 247 AQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVT 306

Query: 652 CHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
            + +       G    A +    ++ R L  E++T
Sbjct: 307 YNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITT 341



 Score = 60.1 bits (144), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 119/572 (20%), Positives = 224/572 (39%), Gaps = 74/572 (12%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y  ++    K G L++A    + + +R GI P +  Y+S + A  K  +M  A   L  M
Sbjct: 202 YTTVINGFFKEGDLDKAYGTYHEMLDR-GILPNVVTYSSIIAALCKAQAMDKAMEVLTSM 260

Query: 185 DSRMVGKNEVTYTELL----KLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRL 240
               V  N  TY  ++         ++ +  + ++  D ++   ++  SL  ++    R 
Sbjct: 261 VKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRC 320

Query: 241 RDLKSAYETLQH---MVALAMMGKLYINRTSEGRLRS--SRLDIPIPLNALPVMKVLRWS 295
            + +  ++++        +   G L     ++G L      LD+ +     P      + 
Sbjct: 321 TEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPN----HYV 376

Query: 296 FSDVIHACGRTQNSGLAEQLML---QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
           FS +I A  +    G  +Q ML   +M+  GL P + TY   I  +     + + M   +
Sbjct: 377 FSILICAYAK---QGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFE 433

Query: 353 IMQQNNLKPQD----STIATLSV--ECSKALELDL------------------------- 381
            M    L P +    S I +L +  +  KA EL L                         
Sbjct: 434 QMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEG 493

Query: 382 ----AEALLDQISRCTNPKP----FSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTY 432
               +E L D + R    KP    +S  +       K + A K+ A M    ++PD  TY
Sbjct: 494 RVIESEKLFDLMVR-IGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTY 552

Query: 433 ELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGM 492
             L + +  ++   +   +F +++S+     +  D+   NI    +       A      
Sbjct: 553 NTLINGYCKISRMEDALVLFREMESS----GVSPDIITYNIILQGLFQTRRTAA------ 602

Query: 493 IRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID 552
            +EL     +S T L   TYN +LH L +   +  A+ +F+ +    +     T+NIMI 
Sbjct: 603 AKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIG 662

Query: 553 CCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPH 612
               +     A  L + +  +G  P   TY+ + + L++ G  +E  +L   +   G   
Sbjct: 663 ALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTA 722

Query: 613 DVLLYNTILKKACEKG---RIDVIEFIIEQMH 641
           +  + N+I++K  ++G   R     F+I++ H
Sbjct: 723 NSRMLNSIVRKLLQRGDITRAGTYLFMIDEKH 754



 Score = 40.0 bits (92), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 63/143 (44%), Gaps = 8/143 (5%)

Query: 528 AMEIFKQMKTCG---IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
           A+  + +M   G   + PN  TY I+I  C          A +  +++ GF    + +T 
Sbjct: 72  AVSRYNRMARAGADEVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTP 131

Query: 585 LIKILLDYGDFDEALNLL--DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642
           L+K L       +A++++   +  L  IP +V  YN +LK  C++ R      +++ M  
Sbjct: 132 LLKGLCADKRTSDAMDIVLRRMTQLGCIP-NVFSYNILLKGLCDENRSQEALELLQMMPD 190

Query: 643 N--KVQPDPSTCHFVFSGYVNCG 663
           +     PD  +   V +G+   G
Sbjct: 191 DGGDCPPDVVSYTTVINGFFKEG 213


>gi|363543233|ref|NP_001241831.1| uncharacterized protein LOC100857030 [Zea mays]
 gi|224033903|gb|ACN36027.1| unknown [Zea mays]
          Length = 655

 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 95/370 (25%), Positives = 159/370 (42%), Gaps = 22/370 (5%)

Query: 314 QLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVEC 373
           +++ QM   G  P    Y   I  I  +  L    E+L  M    LKP      TL    
Sbjct: 283 EVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGL 342

Query: 374 SKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDK---PERAIKIFAKMRQK-LRPDI 429
             A   +  E LL ++     P     F    D   +    +R I++  +M ++   PD+
Sbjct: 343 CSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLERGCMPDV 402

Query: 430 RTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKA--- 486
            TY  +      +N   +EG +   V   K + A       N I ++ I +K L  A   
Sbjct: 403 ITYTTV------INGFCKEGLIDEAVMLLKSMTAC--GCKPNTISYT-IVLKGLCSAERW 453

Query: 487 LGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAAT 546
           + AE ++ ++IQ  C    PL   T+NT+++ L +     +A+E+ KQM   G  P+  +
Sbjct: 454 VDAEDLMSQMIQQGC----PLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLIS 509

Query: 547 YNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVS 606
           Y+ +ID          A  L+++MV  G  P T+ Y+++   L   G  ++ + + D + 
Sbjct: 510 YSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQ 569

Query: 607 LEGIPHDVLLYNTILKKACEKGRID-VIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFH 665
              I  D +LYN ++   C++G  +  IEF +  M  +   P+ ST   +  G  + GF 
Sbjct: 570 DTTIRSDAVLYNAVISSLCKRGETERAIEF-LAYMVSSGCVPNESTYTILIRGLASEGFV 628

Query: 666 NSAMEALQVL 675
             A E L  L
Sbjct: 629 KEAQEMLTEL 638



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 89/392 (22%), Positives = 164/392 (41%), Gaps = 34/392 (8%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGM-----E 349
           S++ V+      +  G  ++LM +M  +   P+  T++  I  +      RNG+     E
Sbjct: 229 SYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLC-----RNGLFERVHE 283

Query: 350 VLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAAC 405
           VL  M ++   P     AT+     K   L++A  +L+++      KP    ++  L   
Sbjct: 284 VLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPS-YGLKPNVVCYNTLLKGL 342

Query: 406 DTMDKPERAIKIFAKMRQKLRP-DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAI 464
            + ++ E   ++ A+M  K  P D  T+ +L              + F Q     R+  +
Sbjct: 343 CSAERWEETEELLAEMFDKDCPLDDVTFNILV-------------DFFCQNGLVDRVIEL 389

Query: 465 EMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLG----TPTYNTVLHSLV 520
              M         I+   ++     EG+I E +     S T  G    T +Y  VL  L 
Sbjct: 390 LEQMLERGCMPDVITYTTVINGFCKEGLIDEAVMLL-KSMTACGCKPNTISYTIVLKGLC 448

Query: 521 EAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTM 580
            A+    A ++  QM   G P N  T+N +I+        + A  L+  M+ +G  P  +
Sbjct: 449 SAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLI 508

Query: 581 TYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQM 640
           +Y+ +I  L   G  DEAL LL+++  +G+  + ++Y++I      +GRI+ +  + + +
Sbjct: 509 SYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNI 568

Query: 641 HQNKVQPDPSTCHFVFSGYVNCGFHNSAMEAL 672
               ++ D    + V S     G    A+E L
Sbjct: 569 QDTTIRSDAVLYNAVISSLCKRGETERAIEFL 600



 Score = 70.1 bits (170), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 64/265 (24%), Positives = 118/265 (44%), Gaps = 11/265 (4%)

Query: 412 ERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           ER  ++ A+M      PDIR Y  +      ++   +EG++    +   R+ +  +   +
Sbjct: 279 ERVHEVLAQMVEHGCTPDIRMYATI------IDGICKEGHLEVAHEILNRMPSYGL---K 329

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAME 530
            N+   +  +K L  A   E    EL+    D   PL   T+N ++    +     R +E
Sbjct: 330 PNVVCYNTLLKGLCSAERWE-ETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIE 388

Query: 531 IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590
           + +QM   G  P+  TY  +I+          A  L+  M   G  P T++YT ++K L 
Sbjct: 389 LLEQMLERGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLC 448

Query: 591 DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650
               + +A +L+  +  +G P + + +NT++   C+KG ++    +++QM  N   PD  
Sbjct: 449 SAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLI 508

Query: 651 TCHFVFSGYVNCGFHNSAMEALQVL 675
           +   V  G    G  + A+E L V+
Sbjct: 509 SYSTVIDGLGKAGKTDEALELLNVM 533



 Score = 62.4 bits (150), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/244 (22%), Positives = 101/244 (41%), Gaps = 8/244 (3%)

Query: 492 MIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI 551
           ++R+L  + C+        +YN VL  L  A+      E+ ++M     PPN  T+N +I
Sbjct: 214 LLRDLPSFGCEPDVV----SYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLI 269

Query: 552 DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIP 611
                   F+    +++ MV  G  P    Y  +I  +   G  + A  +L+ +   G+ 
Sbjct: 270 SYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYGLK 329

Query: 612 HDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEA 671
            +V+ YNT+LK  C   R +  E ++ +M       D  T + +   +   G  +  +E 
Sbjct: 330 PNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIEL 389

Query: 672 LQVLSMRMLCEEVSTLEEKRSDFEDLILAEDSEAESRILQFCEDSNENLAFTAALLQL-- 729
           L+ +  R    +V T     + F    L +++    + +  C      +++T  L  L  
Sbjct: 390 LEQMLERGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCS 449

Query: 730 --RW 731
             RW
Sbjct: 450 AERW 453



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/136 (22%), Positives = 65/136 (47%)

Query: 513 NTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVR 572
           N VL+++ +      A+ + + + + G  P+  +YN ++    + + +     L+  MVR
Sbjct: 196 NLVLNAICDQGSVDEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVR 255

Query: 573 DGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDV 632
               P  +T+  LI  L   G F+    +L  +   G   D+ +Y TI+   C++G ++V
Sbjct: 256 MACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEV 315

Query: 633 IEFIIEQMHQNKVQPD 648
              I+ +M    ++P+
Sbjct: 316 AHEILNRMPSYGLKPN 331



 Score = 47.8 bits (112), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 71/169 (42%), Gaps = 2/169 (1%)

Query: 505 TPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSAS 564
            P    TY  V+ +L        A+ +  +M   G  P    Y+++++       F+SA 
Sbjct: 118 VPPNAYTYFPVVRALCARGRIADALAVLDEMPRRGCAPIPPMYHVILEAACRGGGFRSAV 177

Query: 565 ALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL-DLVSLEGIPHDVLLYNTILKK 623
            ++  +   G          ++  + D G  DEAL+LL DL S  G   DV+ YN +LK 
Sbjct: 178 RVLEDLHARGCALDVGNCNLVLNAICDQGSVDEALHLLRDLPSF-GCEPDVVSYNAVLKG 236

Query: 624 ACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEAL 672
            C   R   ++ ++E+M +    P+  T + + S     G      E L
Sbjct: 237 LCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVL 285



 Score = 41.2 bits (95), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 43/99 (43%)

Query: 577 PQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFI 636
           P   TY  +++ L   G   +AL +LD +   G      +Y+ IL+ AC  G       +
Sbjct: 120 PNAYTYFPVVRALCARGRIADALAVLDEMPRRGCAPIPPMYHVILEAACRGGGFRSAVRV 179

Query: 637 IEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
           +E +H      D   C+ V +   + G  + A+  L+ L
Sbjct: 180 LEDLHARGCALDVGNCNLVLNAICDQGSVDEALHLLRDL 218


>gi|119638441|gb|ABL85032.1| auxin efflux carrier [Brachypodium sylvaticum]
          Length = 895

 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 127/596 (21%), Positives = 234/596 (39%), Gaps = 21/596 (3%)

Query: 108 ETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGA 167
           + +  M  ++  +N   Y +M+  LC+ G +EEA      + + YG+ P    Y + +  
Sbjct: 264 KVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMVD-YGLSPDAFTYGALMNG 322

Query: 168 CAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK-HYSLS 226
             K   +  A   LD M    +  N V Y  L+   + +   +   +I ++ I      +
Sbjct: 323 LCKGSRLKEAKALLDEMSCSGLKPNIVVYGTLVDGFMKEGKTAEAFDILKEMISAGVQPN 382

Query: 227 IFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYI-NRTSEGRLRSSRLDIPIPL-N 284
                  +    ++  L  A + L+ M+ + +    +  N   +G  +    D    L N
Sbjct: 383 KIMYDNLIRGLCKIGQLGRASKLLKEMIKVGLRPDTFTYNPLMQGHFQQHDKDGAFELLN 442

Query: 285 ALPVMKVLRWSFSDVIHACGRTQN--SGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDR 342
            +    +L   +S  I   G  QN  S  A  L+ +M S GL+P++  Y   I     + 
Sbjct: 443 EMRNSGILPNVYSYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEG 502

Query: 343 GLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI-SRCTNPKPF--S 399
            +    E L+ M + N+ P      +L    S    ++ AE    Q+  R   P  F  S
Sbjct: 503 NISLACEALEKMTKANVHPDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPDEFTYS 562

Query: 400 AFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSA 458
             +         E+A ++  +M    L+P+  TY  L          Y + N + +V S 
Sbjct: 563 GLIHGYCKTGNLEKADQLLRQMLNSGLKPNADTYTDLLE-------GYFKSNDYEKVSSI 615

Query: 459 KRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHS 518
            +      D   N+I    I ++NL ++   E     L +   +   P     Y++++  
Sbjct: 616 LQSMLGSGDKPDNHIYG--IVIRNLSRSENMEVAFMVLTEVEKNGLVP-DLHIYSSLISG 672

Query: 519 LVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQ 578
           L +  +  +A+ +  +M   G+ P    YN +ID          A  +   ++  G  P 
Sbjct: 673 LCKIADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLVPN 732

Query: 579 TMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIE 638
            +TYTALI      GD  +A +L   +   GI  D  +YN +     +   ++   F+ E
Sbjct: 733 CVTYTALIDGNCKNGDITDAFDLYKEMLDRGIAPDAFVYNVLATGCSDAADLEQALFLTE 792

Query: 639 QMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDF 694
           +M  N+   + S  + +  G+   G      + L V+  R +     T+E+  S+F
Sbjct: 793 EMF-NRGYANVSLFNTLVHGFCKRGKLQETEKLLHVMMDREIVPNAQTVEKVVSEF 847



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 113/563 (20%), Positives = 216/563 (38%), Gaps = 28/563 (4%)

Query: 112 MMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKL 171
           MM +  +    +C   +++ L +   +E    L  F+ E  GI P +  Y++F+ A  K 
Sbjct: 198 MMADLGLAPTRRCCNGLLKDLLRADAMELLWKLKGFM-EGAGILPDVYTYSTFIEAHCKA 256

Query: 172 HSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLS--IFS 229
                A    + M  R    NEVTY  ++        +       E+ +  Y LS   F+
Sbjct: 257 RDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMVD-YGLSPDAFT 315

Query: 230 LRKFVWSFTRLRDLKSAYETLQHMVA------LAMMGKLYINRTSEGRLRSSRLDIPIPL 283
               +    +   LK A   L  M        + + G L      EG+  +   DI   +
Sbjct: 316 YGALMNGLCKGSRLKEAKALLDEMSCSGLKPNIVVYGTLVDGFMKEGK-TAEAFDILKEM 374

Query: 284 NALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRG 343
            +  V    +  + ++I    +    G A +L+ +M  +GL+P + TY+  ++       
Sbjct: 375 ISAGVQPN-KIMYDNLIRGLCKIGQLGRASKLLKEMIKVGLRPDTFTYNPLMQGHFQQHD 433

Query: 344 LRNGMEVLKIMQQNNLKPQDSTIATL-SVECSKALELDLAEALLDQISRCTNPKPF--SA 400
                E+L  M+ + + P   +   + +  C      +    L + IS    P  F  + 
Sbjct: 434 KDGAFELLNEMRNSGILPNVYSYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAP 493

Query: 401 FLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAK 459
            +           A +   KM +  + PD+  Y  L      V    E    ++QV   +
Sbjct: 494 LIIGHSKEGNISLACEALEKMTKANVHPDLFCYNSLIKGLSTVGRMEEAEEYYAQV---Q 550

Query: 460 RINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSL 519
           +   +  +   + + H +    NL KA        +L++   +S       TY  +L   
Sbjct: 551 KRGLVPDEFTYSGLIHGYCKTGNLEKA-------DQLLRQMLNSGLKPNADTYTDLLEGY 603

Query: 520 VEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQT 579
            ++ +  +   I + M   G  P+   Y I+I   S     + A  +++ + ++G  P  
Sbjct: 604 FKSNDYEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDL 663

Query: 580 MTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQ 639
             Y++LI  L    D ++A+ LLD ++ EG+   ++ YN ++   C  G I     + + 
Sbjct: 664 HIYSSLISGLCKIADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDS 723

Query: 640 MHQNKVQPDPSTCHFVFSGYVNC 662
           +    + P+  T   +  G  NC
Sbjct: 724 ILAKGLVPNCVTYTALIDG--NC 744



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 98/451 (21%), Positives = 172/451 (38%), Gaps = 51/451 (11%)

Query: 298 DVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQN 357
           D     G  +N   A Q++L M  LGL P+    +G ++ ++    +    ++   M+  
Sbjct: 181 DTYKKTGSVRN---AAQVVLMMADLGLAPTRRCCNGLLKDLLRADAMELLWKLKGFMEGA 237

Query: 358 NLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKPERA 414
            + P   T +T      KA + D A+ + +++ R     N   ++  ++        E A
Sbjct: 238 GILPDVYTYSTFIEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEA 297

Query: 415 IKIFAKMRQ-KLRPDIRTYELLFS----------------------------LFGN-VNA 444
                +M    L PD  TY  L +                            ++G  V+ 
Sbjct: 298 FGFKEEMVDYGLSPDAFTYGALMNGLCKGSRLKEAKALLDEMSCSGLKPNIVVYGTLVDG 357

Query: 445 PYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL---GAEGMIRELIQYFC 501
             +EG      D  K       +M    +Q + I   NL++ L   G  G   +L++   
Sbjct: 358 FMKEGKTAEAFDILK-------EMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLKEMI 410

Query: 502 DSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFK 561
                  T TYN ++    +  +   A E+  +M+  GI PN  +Y IMI+        K
Sbjct: 411 KVGLRPDTFTYNPLMQGHFQQHDKDGAFELLNEMRNSGILPNVYSYGIMINGLCQNGESK 470

Query: 562 SASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTIL 621
            A  L+  M+ +G  P    Y  LI      G+   A   L+ ++   +  D+  YN+++
Sbjct: 471 EAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGNISLACEALEKMTKANVHPDLFCYNSLI 530

Query: 622 KKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLC 681
           K     GR++  E    Q+ +  + PD     F +SG ++       +E    L  +ML 
Sbjct: 531 KGLSTVGRMEEAEEYYAQVQKRGLVPD----EFTYSGLIHGYCKTGNLEKADQLLRQMLN 586

Query: 682 EEVSTLEEKRSD-FEDLILAEDSEAESRILQ 711
             +    +  +D  E    + D E  S ILQ
Sbjct: 587 SGLKPNADTYTDLLEGYFKSNDYEKVSSILQ 617


>gi|18071404|gb|AAL58263.1|AC068923_5 putative membrane-associated protein [Oryza sativa Japonica Group]
          Length = 1219

 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 101/470 (21%), Positives = 188/470 (40%), Gaps = 20/470 (4%)

Query: 227 IFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLY-----INRTSEGRLRSSRLDIPI 281
           + S    +  F +  DL  AY T   M+   ++  +      I    + +     +++  
Sbjct: 199 VVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLT 258

Query: 282 PLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSD 341
            +    VM   R +++ ++H    +     A   + +M S G++P   TY+  +  +  +
Sbjct: 259 SMVKNGVMPNCR-TYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKN 317

Query: 342 RGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT---NPKPF 398
                  ++   M +  LKP+ +T  TL    +    L     LLD + R     N   F
Sbjct: 318 GRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVF 377

Query: 399 SAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDS 457
           S  + A     K ++A+ +F+KMRQ+ L PD  TY  +  +        +    F Q+  
Sbjct: 378 SILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMID 437

Query: 458 AKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLH 517
            +       ++  N++ HS        KA       +ELI    D    L T  +N+++ 
Sbjct: 438 ERLSPG---NIVYNSLIHSLCIFDKWDKA-------KELILEMLDRGICLDTIFFNSIID 487

Query: 518 SLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYP 577
           S  +      + ++F  M   G+ P+  TY+ +ID   +      A+ L++ MV  G  P
Sbjct: 488 SHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKP 547

Query: 578 QTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFII 637
             +TY  LI         ++AL L   +   G+  D++ YN IL+   +  R    + + 
Sbjct: 548 DCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELY 607

Query: 638 EQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTL 687
             + ++  Q + ST + +  G       + A+   Q L +  L  E  T 
Sbjct: 608 VGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTF 657



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 79/171 (46%), Gaps = 2/171 (1%)

Query: 495 ELIQYFCD--SKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID 552
           EL+Q   D     P    +Y TV++   +  +  +A   + +M   GI PN  TY+ +I 
Sbjct: 183 ELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIA 242

Query: 553 CCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPH 612
                +    A  +++ MV++G  P   TY +++      G   EA+  L  +  +G+  
Sbjct: 243 ALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEP 302

Query: 613 DVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
           DV+ YN+++   C+ GR      + + M +  ++P+ +T   +  GY   G
Sbjct: 303 DVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKG 353



 Score = 62.8 bits (151), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 92/215 (42%), Gaps = 6/215 (2%)

Query: 478 ISMKNLLKALGAEGMIRELIQYFCDSKTPLG-TP---TYNTVLHSLVEAQESHRAMEIFK 533
           I+   LLK L A+    + +       T LG  P   +YN +L  L +   S  A+E+ +
Sbjct: 127 IAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQ 186

Query: 534 QMKTCG--IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLD 591
            M   G   PP+  +Y  +I+          A      M+  G  P  +TY+++I  L  
Sbjct: 187 MMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCK 246

Query: 592 YGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
               D+A+ +L  +   G+  +   YN+I+   C  G+       +++MH + V+PD  T
Sbjct: 247 AQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVT 306

Query: 652 CHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
            + +       G    A +    ++ R L  E++T
Sbjct: 307 YNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITT 341



 Score = 59.7 bits (143), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 114/552 (20%), Positives = 215/552 (38%), Gaps = 68/552 (12%)

Query: 107 METWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERY--GIYPILPVYNSF 164
           ME    M +  +  N + Y  ++   C  G  +EA   I FL + +  G+ P +  YNS 
Sbjct: 254 MEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEA---IGFLKKMHSDGVEPDVVTYNSL 310

Query: 165 LGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK--- 221
           +    K      A    D M  R +     TY  LL+    +  L  +H + +  ++   
Sbjct: 311 MDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGI 370

Query: 222 ---HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLD 278
              HY  SI                         + A A  GK+        ++R   L+
Sbjct: 371 HPNHYVFSIL------------------------ICAYAKQGKVDQAMLVFSKMRQQGLN 406

Query: 279 IPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAI 338
            P  +    V+ +L  S        GR ++   A +   QM    L P +  Y+  I ++
Sbjct: 407 -PDTVTYGTVIGILCKS--------GRVED---AMRYFEQMIDERLSPGNIVYNSLIHSL 454

Query: 339 -VSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP 397
            + D+  +    +L+++ +          + +   C +   ++ +E L D + R    KP
Sbjct: 455 CIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIE-SEKLFDLMVR-IGVKP 512

Query: 398 ----FSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMF 452
               +S  +       K + A K+ A M    ++PD  TY  L + +  ++   +   +F
Sbjct: 513 DIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLF 572

Query: 453 SQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTY 512
            +++S+     +  D+   NI    +       A       +EL     +S T L   TY
Sbjct: 573 REMESS----GVSPDIITYNIILQGLFQTRRTAA------AKELYVGITESGTQLELSTY 622

Query: 513 NTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVR 572
           N +LH L +   +  A+ +F+ +    +     T+NIMI     +     A  L + +  
Sbjct: 623 NIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSA 682

Query: 573 DGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG---R 629
           +G  P   TY+ + + L++ G  +E  +L   +   G   +  + N+I++K  ++G   R
Sbjct: 683 NGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITR 742

Query: 630 IDVIEFIIEQMH 641
                F+I++ H
Sbjct: 743 AGTYLFMIDEKH 754



 Score = 39.7 bits (91), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 63/143 (44%), Gaps = 8/143 (5%)

Query: 528 AMEIFKQMKTCG---IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
           A+  + +M   G   + PN  TY I+I  C          A +  +++ GF    + +T 
Sbjct: 72  AVSRYNRMARAGADEVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTP 131

Query: 585 LIKILLDYGDFDEALNLL--DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642
           L+K L       +A++++   +  L  IP +V  YN +LK  C++ R      +++ M  
Sbjct: 132 LLKGLCADKRTSDAMDIVLRRMTQLGCIP-NVFSYNILLKGLCDENRSQEALELLQMMPD 190

Query: 643 N--KVQPDPSTCHFVFSGYVNCG 663
           +     PD  +   V +G+   G
Sbjct: 191 DGGDCPPDVVSYTTVINGFFKEG 213


>gi|115446101|ref|NP_001046830.1| Os02g0470000 [Oryza sativa Japonica Group]
 gi|47497415|dbj|BAD19472.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|47497530|dbj|BAD19582.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113536361|dbj|BAF08744.1| Os02g0470000 [Oryza sativa Japonica Group]
          Length = 649

 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 82/338 (24%), Positives = 138/338 (40%), Gaps = 15/338 (4%)

Query: 314 QLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVEC 373
           +LM +M   G  P+  T+   I ++  +  + + +EVL+ M++   +P       +    
Sbjct: 313 ELMAEMVRKGCSPNEATFSMLISSLCQNNLVDSAVEVLEQMEKYGCEPDTVNYNIIINSL 372

Query: 374 SKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYE 433
           S+   +D A  LL+ +    +   F+A L      ++   A ++ A+M    R D    E
Sbjct: 373 SERGRVDDALRLLNSMVCKPDALGFNAVLKGFCRAERWHDASELIAQM---FRDDCPLIE 429

Query: 434 LLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMI 493
           + F++  +         M  Q         +   M R       ++  +LL     +G++
Sbjct: 430 MTFNILID---------MLCQNGLVNYATQVFEQMPRYRCTPDIVTYSSLLNGFSEQGLV 480

Query: 494 RELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC 553
              IQ F          +YN VL  L  A     A E+  +M     PPN  T+NI+I+ 
Sbjct: 481 EVAIQLFRSMPCKPDIFSYNAVLKGLCRAARWEDAGELIAEMVGKDCPPNEVTFNILINS 540

Query: 554 CSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHD 613
                    A  ++  M   G  P   TY ALI    + G  D+AL LL  +S +    D
Sbjct: 541 LCQKGLVDRAIEVLEQMPNYGSTPDIFTYNALINGFSEQGRLDDALKLLSTMSCK---PD 597

Query: 614 VLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
            + YN+ LK  C   R    E ++ +M +NK  P+  T
Sbjct: 598 AISYNSTLKGLCRAERWQDAEELVAEMLRNKCTPNEVT 635



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 78/371 (21%), Positives = 154/371 (41%), Gaps = 23/371 (6%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTI-ATLS 370
           A QL+ QM   G  P    Y   I        +   +++L  M     KP      A L 
Sbjct: 244 AVQLLDQMPRYGCTPDVVIYSTLINGFSEQGHVDQALDLLNTML---CKPNTVCYNAALK 300

Query: 371 VECSKALELDLAEALLDQISRCTNPK--PFSAFLAACDTMDKPERAIKIFAKMRQ-KLRP 427
             C      D+ E + + + +  +P    FS  +++    +  + A+++  +M +    P
Sbjct: 301 GLCIAERWEDIGELMAEMVRKGCSPNEATFSMLISSLCQNNLVDSAVEVLEQMEKYGCEP 360

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL 487
           D   Y ++      +N+  E G    +VD A R+  +   + + +    +  +K   +A 
Sbjct: 361 DTVNYNII------INSLSERG----RVDDALRL--LNSMVCKPDALGFNAVLKGFCRAE 408

Query: 488 GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATY 547
                   + Q F D   PL   T+N ++  L +    + A ++F+QM      P+  TY
Sbjct: 409 RWHDASELIAQMFRDD-CPLIEMTFNILIDMLCQNGLVNYATQVFEQMPRYRCTPDIVTY 467

Query: 548 NIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSL 607
           + +++  S     + A  L   M      P   +Y A++K L     +++A  L+  +  
Sbjct: 468 SSLLNGFSEQGLVEVAIQLFRSM---PCKPDIFSYNAVLKGLCRAARWEDAGELIAEMVG 524

Query: 608 EGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNS 667
           +  P + + +N ++   C+KG +D    ++EQM      PD  T + + +G+   G  + 
Sbjct: 525 KDCPPNEVTFNILINSLCQKGLVDRAIEVLEQMPNYGSTPDIFTYNALINGFSEQGRLDD 584

Query: 668 AMEALQVLSMR 678
           A++ L  +S +
Sbjct: 585 ALKLLSTMSCK 595



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/194 (23%), Positives = 82/194 (42%), Gaps = 11/194 (5%)

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLG-TP---TYNTVLHSLVEAQES 525
           RN    + ++    +++    G++   +Q   D     G TP    Y+T+++   E    
Sbjct: 218 RNRCPPNEVTFATQIRSFCQNGLLDRAVQLL-DQMPRYGCTPDVVIYSTLINGFSEQGHV 276

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
            +A+++   M      PN   YN  +    I   ++    L++ MVR G  P   T++ L
Sbjct: 277 DQALDLLNTMLC---KPNTVCYNAALKGLCIAERWEDIGELMAEMVRKGCSPNEATFSML 333

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           I  L      D A+ +L+ +   G   D + YN I+    E+GR+D    ++  M     
Sbjct: 334 ISSLCQNNLVDSAVEVLEQMEKYGCEPDTVNYNIIINSLSERGRVDDALRLLNSM---VC 390

Query: 646 QPDPSTCHFVFSGY 659
           +PD    + V  G+
Sbjct: 391 KPDALGFNAVLKGF 404



 Score = 46.6 bits (109), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 88/471 (18%), Positives = 170/471 (36%), Gaps = 67/471 (14%)

Query: 121 NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLC 180
           N   +   +++ C+ G L+ A  L+  +  RYG  P + +Y++ +          H +  
Sbjct: 224 NEVTFATQIRSFCQNGLLDRAVQLLDQM-PRYGCTPDVVIYSTLING---FSEQGHVDQA 279

Query: 181 LDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYSLSIFSLRKFVWSFTR 239
           LDL+++ +   N V Y   LK     +    + E+  + + K  S +  +    + S  +
Sbjct: 280 LDLLNTMLCKPNTVCYNAALKGLCIAERWEDIGELMAEMVRKGCSPNEATFSMLISSLCQ 339

Query: 240 LRDLKSAYETLQHMVALA-----MMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRW 294
              + SA E L+ M         +   + IN  SE      R+D  + L    V K    
Sbjct: 340 NNLVDSAVEVLEQMEKYGCEPDTVNYNIIINSLSE----RGRVDDALRLLNSMVCKPDAL 395

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
            F+ V+    R +    A +L+ QM          T++  I  +  +  +    +V + M
Sbjct: 396 GFNAVLKGFCRAERWHDASELIAQMFRDDCPLIEMTFNILIDMLCQNGLVNYATQVFEQM 455

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERA 414
            +    P   T                                +S+ L         E A
Sbjct: 456 PRYRCTPDIVT--------------------------------YSSLLNGFSEQGLVEVA 483

Query: 415 IKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQ 474
           I++F  M    +PDI +Y  +           + G + ++             M   +  
Sbjct: 484 IQLFRSM--PCKPDIFSYNAVLKGLCRAARWEDAGELIAE-------------MVGKDCP 528

Query: 475 HSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEI 531
            + ++   L+ +L  +G++   I+          TP   TYN +++      E  R  + 
Sbjct: 529 PNEVTFNILINSLCQKGLVDRAIEVLEQMPNYGSTPDIFTYNALINGF---SEQGRLDDA 585

Query: 532 FKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTY 582
            K + T    P+A +YN  +        ++ A  LV+ M+R+   P  +T+
Sbjct: 586 LKLLSTMSCKPDAISYNSTLKGLCRAERWQDAEELVAEMLRNKCTPNEVTF 636



 Score = 46.6 bits (109), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 58/121 (47%), Gaps = 3/121 (2%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TY  ++     +     A+ +   M    + P+  TYN ++    I + ++ A  L++ M
Sbjct: 160 TYTALIDGYCRSGRLDDALRLIASMP---VAPDTYTYNTVLKGLCIAKKWEEAEELMAEM 216

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           +R+   P  +T+   I+     G  D A+ LLD +   G   DV++Y+T++    E+G +
Sbjct: 217 IRNRCPPNEVTFATQIRSFCQNGLLDRAVQLLDQMPRYGCTPDVVIYSTLINGFSEQGHV 276

Query: 631 D 631
           D
Sbjct: 277 D 277


>gi|242096872|ref|XP_002438926.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
 gi|241917149|gb|EER90293.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
          Length = 924

 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 114/549 (20%), Positives = 211/549 (38%), Gaps = 44/549 (8%)

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
           M E    LN   Y  ++  LC+ G +EEA      + E YG+ P    Y + +    K  
Sbjct: 269 MRETGCSLNVVTYNTLIGGLCRAGAIEEAFGYKKEM-EDYGLVPDGFTYGAIINGLCKRG 327

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRK 232
               A   LD M    +  N V Y+ L+   + Q N     +I    +K  S +     K
Sbjct: 328 RPDQAKCLLDEMSCAGLMPNVVVYSTLIDGFMRQGNADEAFKI----VKEMSAAGVQPNK 383

Query: 233 FVW-----SFTRLRDLKSAYETLQHMVALAMMGK-LYINRTSEGRLRSSRLDIPIPLNAL 286
             +        +L  +  A   L+ M  +  M   +  N   EG LR    +      A 
Sbjct: 384 ITYDNLIRGLCKLGRMGRASRILKQMTKIGYMADTMTYNLVIEGHLRQHNKE-----EAF 438

Query: 287 PVMKVLR--------WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAI 338
            ++  +R        +++S +I+   +   S  A  L+ QM + GL+P++  Y   I   
Sbjct: 439 LLLNEMRKGGISPNVYTYSIIINGLCQIGESERASGLLEQMIADGLKPNAFVYAPLISGY 498

Query: 339 VSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPKP 397
             +       E LK M + NL P      +L +  S   ++D A    D+ + +   P  
Sbjct: 499 CREGSFSLACETLKKMTRENLTPDLYCYNSLIIGLSNVGKMDEAIEYYDEMLEKGFQPND 558

Query: 398 FS--AFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQ 454
           F+    +         E+A ++  +M    L P+   Y  +            EG  + +
Sbjct: 559 FTYGGLIHGYSMAGNLEKAEQLLHQMLNSGLNPNDFIYAQIL-----------EG--YFK 605

Query: 455 VDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---T 511
            D+ +++++    M    +   +     ++  L + G ++  +      +     P    
Sbjct: 606 SDNLEKVSSTLKSMLEKGLMPDNRLYGIVIHNLSSSGHMQAAVSVLSVIEKNGLVPDSLI 665

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           Y +++    +A +  +A+ +  +M   GI P  + YN +ID          A  + + ++
Sbjct: 666 YGSLISGFCKAADMEKAVGLLDEMAKKGIEPGISCYNALIDGFCKSDDISHARNIFNSII 725

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
             G  P  +TYT LI      GD  +A++L + +  EG+  D  +Y+ +       G + 
Sbjct: 726 CKGLPPNCVTYTTLIDGYCKAGDIRDAIDLYNEMLTEGVAPDAFVYSVLAAGCSNSGDLQ 785

Query: 632 VIEFIIEQM 640
              FI E+M
Sbjct: 786 QALFITEEM 794



 Score = 85.9 bits (211), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 107/473 (22%), Positives = 184/473 (38%), Gaps = 48/473 (10%)

Query: 233 FVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALP-VMKV 291
           F WS TRL     A +   H+        LY    + G L       P P   L  V + 
Sbjct: 106 FYWSRTRLAPSAPAPDAFAHLAVSLCAAGLY--PQANGLLDQMIRAYPTPPLVLSSVHRA 163

Query: 292 LRWS-----------FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVS 340
           L  S             D     GR ++     +++L M+ LGL PS    +G ++ ++ 
Sbjct: 164 LSGSDQGRRPVVLDVLVDTYKKTGRVRD---GAEVVLLMKDLGLAPSLRCCNGLLKDLLR 220

Query: 341 DRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI--SRCT-NPKP 397
              L    +V   M+   + P   T +TL     K  +L+ A+ +++++  + C+ N   
Sbjct: 221 ADALDLLWKVRGFMEGAGISPDVYTYSTLIEAYCKVRDLESAKKVVEEMRETGCSLNVVT 280

Query: 398 FSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVD 456
           ++  +         E A     +M    L PD  TY  + +       P +   +  ++ 
Sbjct: 281 YNTLIGGLCRAGAIEEAFGYKKEMEDYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEMS 340

Query: 457 SA-----------------KRINAIEM-----DMARNNIQHSHISMKNLLKAL---GAEG 491
            A                 ++ NA E      +M+   +Q + I+  NL++ L   G  G
Sbjct: 341 CAGLMPNVVVYSTLIDGFMRQGNADEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMG 400

Query: 492 MIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI 551
               +++          T TYN V+   +       A  +  +M+  GI PN  TY+I+I
Sbjct: 401 RASRILKQMTKIGYMADTMTYNLVIEGHLRQHNKEEAFLLLNEMRKGGISPNVYTYSIII 460

Query: 552 DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIP 611
           +    I   + AS L+  M+ DG  P    Y  LI      G F  A   L  ++ E + 
Sbjct: 461 NGLCQIGESERASGLLEQMIADGLKPNAFVYAPLISGYCREGSFSLACETLKKMTRENLT 520

Query: 612 HDVLLYNTILKKACEKGRID-VIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
            D+  YN+++      G++D  IE+  ++M +   QP+  T   +  GY   G
Sbjct: 521 PDLYCYNSLIIGLSNVGKMDEAIEY-YDEMLEKGFQPNDFTYGGLIHGYSMAG 572



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 113/563 (20%), Positives = 212/563 (37%), Gaps = 59/563 (10%)

Query: 150 ERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNL 209
           E  GI P +  Y++ + A  K+  +  A   ++ M       N VTY  L+         
Sbjct: 235 EGAGISPDVYTYSTLIEAYCKVRDLESAKKVVEEMRETGCSLNVVTYNTLIGGLC---RA 291

Query: 210 SAVHEI--WEDYIKHYSL--SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYIN 265
            A+ E   ++  ++ Y L    F+    +    +      A   L  M    +M  + + 
Sbjct: 292 GAIEEAFGYKKEMEDYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNVVVY 351

Query: 266 RT-SEGRLRSSRLDIPIPLNALPVMKVL--------RWSFSDVIHACGRTQNSGLAEQLM 316
            T  +G +R    D      A  ++K +        + ++ ++I    +    G A +++
Sbjct: 352 STLIDGFMRQGNAD-----EAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRIL 406

Query: 317 LQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKA 376
            QM  +G    + TY+  I   +          +L  M++  + P   T + +     + 
Sbjct: 407 KQMTKIGYMADTMTYNLVIEGHLRQHNKEEAFLLLNEMRKGGISPNVYTYSIIINGLCQI 466

Query: 377 LELDLAEALLDQ-ISRCTNPKPF------------SAFLAACDTMDKPERAIKIFAKMRQ 423
            E + A  LL+Q I+    P  F             +F  AC+T+ K           R+
Sbjct: 467 GESERASGLLEQMIADGLKPNAFVYAPLISGYCREGSFSLACETLKK---------MTRE 517

Query: 424 KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQ-VDSAKRINAIEMDMARNNIQHSHISMKN 482
            L PD+  Y  L     NV    E    + + ++   + N    D     + H +    N
Sbjct: 518 NLTPDLYCYNSLIIGLSNVGKMDEAIEYYDEMLEKGFQPN----DFTYGGLIHGYSMAGN 573

Query: 483 LLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPP 542
           L KA        +L+    +S        Y  +L    ++    +     K M   G+ P
Sbjct: 574 LEKA-------EQLLHQMLNSGLNPNDFIYAQILEGYFKSDNLEKVSSTLKSMLEKGLMP 626

Query: 543 NAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL 602
           +   Y I+I   S     ++A +++S++ ++G  P ++ Y +LI       D ++A+ LL
Sbjct: 627 DNRLYGIVIHNLSSSGHMQAAVSVLSVIEKNGLVPDSLIYGSLISGFCKAADMEKAVGLL 686

Query: 603 DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNC 662
           D ++ +GI   +  YN ++   C+   I     I   +    + P+  T   +  GY   
Sbjct: 687 DEMAKKGIEPGISCYNALIDGFCKSDDISHARNIFNSIICKGLPPNCVTYTTLIDGYCKA 746

Query: 663 GFHNSAMEALQVLSMRMLCEEVS 685
           G    A++    L   ML E V+
Sbjct: 747 GDIRDAID----LYNEMLTEGVA 765



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 120/625 (19%), Positives = 232/625 (37%), Gaps = 66/625 (10%)

Query: 55  TQMQIVDALC-RGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMM 113
           T   I++ LC RG   +A  LL  +  A        +  +++   R  +     +  + M
Sbjct: 315 TYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNVVVYSTLIDGFMRQGNADEAFKIVKEM 374

Query: 114 EEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHS 173
               +  N   Y  +++ LCK G +  AS ++  +  + G       YN  +    + H+
Sbjct: 375 SAAGVQPNKITYDNLIRGLCKLGRMGRASRILKQM-TKIGYMADTMTYNLVIEGHLRQHN 433

Query: 174 MVHANLCLDLMDSRMVGKNEVTYT----ELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFS 229
              A L L+ M    +  N  TY+     L ++   ++    + ++  D +K    + F 
Sbjct: 434 KEEAFLLLNEMRKGGISPNVYTYSIIINGLCQIGESERASGLLEQMIADGLKP---NAFV 490

Query: 230 LRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYI-NRTSEGRLRSSRLDIPIPLNALPV 288
               +  + R      A ETL+ M    +   LY  N    G     ++D  I      +
Sbjct: 491 YAPLISGYCREGSFSLACETLKKMTRENLTPDLYCYNSLIIGLSNVGKMDEAIEYYDEML 550

Query: 289 MKVLR---WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLR 345
            K  +   +++  +IH      N   AEQL+ QM + GL P+   Y   +        L 
Sbjct: 551 EKGFQPNDFTYGGLIHGYSMAGNLEKAEQLLHQMLNSGLNPNDFIYAQILEGYFKSDNLE 610

Query: 346 NGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFL 402
                LK M +  L P +     +    S +  +  A ++L  I +     +   + + +
Sbjct: 611 KVSSTLKSMLEKGLMPDNRLYGIVIHNLSSSGHMQAAVSVLSVIEKNGLVPDSLIYGSLI 670

Query: 403 AA-CDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKR 460
           +  C   D  E+A+ +  +M +K + P I  Y  L   F                     
Sbjct: 671 SGFCKAADM-EKAVGLLDEMAKKGIEPGISCYNALIDGF--------------------- 708

Query: 461 INAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLV 520
                     ++I H+    +N+  ++  +G+             P    TY T++    
Sbjct: 709 -------CKSDDISHA----RNIFNSIICKGL-------------PPNCVTYTTLIDGYC 744

Query: 521 EAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTM 580
           +A +   A++++ +M T G+ P+A  Y+++   CS     + A  +   M+  G Y    
Sbjct: 745 KAGDIRDAIDLYNEMLTEGVAPDAFVYSVLAAGCSNSGDLQQALFITEEMIARG-YAIIS 803

Query: 581 TYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQM 640
           ++  L+      G   E +  L ++  + I   +L    I+    E G++     I  ++
Sbjct: 804 SFNTLVHGFCKRGKLQETVKFLHVMMDKDIVPSLLTVENIVIGLGEAGKLSEAHTIFVEL 863

Query: 641 HQ-NKVQPDPSTCHFVFSGYVNCGF 664
            Q N    D      +F+  +N G 
Sbjct: 864 QQKNASHRDTDHLSSLFTDMINQGL 888



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 65/142 (45%)

Query: 535 MKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGD 594
           M+  GI P+  TY+ +I+    +R  +SA  +V  M   G     +TY  LI  L   G 
Sbjct: 234 MEGAGISPDVYTYSTLIEAYCKVRDLESAKKVVEEMRETGCSLNVVTYNTLIGGLCRAGA 293

Query: 595 FDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHF 654
            +EA      +   G+  D   Y  I+   C++GR D  + ++++M    + P+      
Sbjct: 294 IEEAFGYKKEMEDYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNVVVYST 353

Query: 655 VFSGYVNCGFHNSAMEALQVLS 676
           +  G++  G  + A + ++ +S
Sbjct: 354 LIDGFMRQGNADEAFKIVKEMS 375


>gi|297836334|ref|XP_002886049.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331889|gb|EFH62308.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 755

 Score = 89.7 bits (221), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 107/443 (24%), Positives = 170/443 (38%), Gaps = 71/443 (16%)

Query: 305 RTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDS 364
           R     LA + +  M S G   ++     FIR   SD     G E+L  M+   ++P   
Sbjct: 315 RAHGLELAREFVEHMLSRGRHLNAALLSLFIRKYCSDGYFDKGWELLMGMKDYGIRPDIV 374

Query: 365 TIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACD---TMDKPERAIKIFAKM 421
                  +  KA  L  A ++L ++      +   +  +  D    + KPE AIK+    
Sbjct: 375 AFTVFIDKLCKAGFLREATSVLFKLKLFGISQDSVSVSSVIDGFCKVGKPEEAIKLIHSF 434

Query: 422 RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQV-------DSAKRINAIE-------MD 467
           R  LRP+I  Y    S   +         +F ++       D       I+        D
Sbjct: 435 R--LRPNIFVYSSFLSNICSTGDMLRASTIFQEIFELGLLPDCYCYTTMIDGYCTLGRTD 492

Query: 468 MA--------RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVL 516
            A        ++    S I+   L+ A    G I +    F   KT    P   TYN ++
Sbjct: 493 KAFQFFGALLKSGNPPSLITYTLLIGACSKFGSISDAESVFRIMKTEGLHPDVVTYNNLM 552

Query: 517 HSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFY 576
           +   +  + ++  E+  +M++ GI P+ ATYNI+I    +      A+ ++S ++R GF 
Sbjct: 553 YGYGKTHQLNKVFELIDEMRSAGISPDVATYNILIHSMVVRGYVDEANEIISELIRRGFV 612

Query: 577 PQTMTYTALIKILLDYGDFDEALNLL----------DLVSLEGIPH-------------- 612
           P  + +T +I  L   GDF EA  L           D+V+   + H              
Sbjct: 613 PSALAFTDVIGGLSKRGDFQEAFILWFYMADLRVKPDVVTCSALLHGYCRAQRMEKAIVL 672

Query: 613 -----------DVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVN 661
                      DV+LYNT++   C  G I+    +I  M Q  + P+ ST H +  G   
Sbjct: 673 FDKLLDAGLKPDVVLYNTLIHGYCSVGDIEKACELIGLMVQRGMLPNESTHHALVVGLEG 732

Query: 662 CGFHNSAMEALQVLSMRMLCEEV 684
             F NS   A       ML EE+
Sbjct: 733 KRFMNSEEHA------SMLLEEI 749



 Score = 41.6 bits (96), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 64/274 (23%), Positives = 104/274 (37%), Gaps = 32/274 (11%)

Query: 117 EIGL--NNKCYLLMMQALCKGGYLEEASNLIYFLGE--RYGIYPILPVYNSFLGACAKLH 172
           E+GL  +  CY  M+   C  G  ++A     F G   + G  P L  Y   +GAC+K  
Sbjct: 468 ELGLLPDCYCYTTMIDGYCTLGRTDKA---FQFFGALLKSGNPPSLITYTLLIGACSKFG 524

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDY--------IKHYS 224
           S+  A     +M +  +  + VTY  L+        L+ V E+ ++         +  Y+
Sbjct: 525 SISDAESVFRIMKTEGLHPDVVTYNNLMYGYGKTHQLNKVFELIDEMRSAGISPDVATYN 584

Query: 225 LSIFSL--RKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIP 282
           + I S+  R +V           A E +  ++    +          G L S R D    
Sbjct: 585 ILIHSMVVRGYV---------DEANEIISELIRRGFVPSALAFTDVIGGL-SKRGDFQEA 634

Query: 283 LNALPVMKVLR-----WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRA 337
                 M  LR      + S ++H   R Q    A  L  ++   GL+P    Y+  I  
Sbjct: 635 FILWFYMADLRVKPDVVTCSALLHGYCRAQRMEKAIVLFDKLLDAGLKPDVVLYNTLIHG 694

Query: 338 IVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
             S   +    E++ +M Q  + P +ST   L V
Sbjct: 695 YCSVGDIEKACELIGLMVQRGMLPNESTHHALVV 728


>gi|296086456|emb|CBI32045.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score = 89.7 bits (221), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 82/351 (23%), Positives = 151/351 (43%), Gaps = 16/351 (4%)

Query: 314 QLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVEC 373
           +L+ +MQ  GL+P+ +TY+G I  +     +     VL+ M    + P      TL    
Sbjct: 209 KLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGF 268

Query: 374 SKALELDLAEALLDQISRCTNPKPFSAFLAA----CDTMDKPERAIKIFAKMR-QKLRPD 428
            K   +  A  L D++ +      F  + A     C T  +   A K+F +M  ++L PD
Sbjct: 269 CKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQT-GRVMEADKLFHEMVCKRLEPD 327

Query: 429 IRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALG 488
             TY  L      ++   +EG M        ++  ++M +  N + ++  ++ + L   G
Sbjct: 328 EVTYTAL------IDGYCKEGKMKEAFSLHNQM--LQMGLTPNIVTYT--ALADGLCKCG 377

Query: 489 AEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYN 548
                 EL+   C     L   TYN++++ L +A    +A+++ K M+  G  P+A TY 
Sbjct: 378 EVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYT 437

Query: 549 IMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLE 608
            ++D     R    A  L+  M+     P  +T+  L+      G  ++   LL  +  +
Sbjct: 438 TLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEK 497

Query: 609 GIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
           GI  +   YN+++K+ C +  +     I   M    V PD +T + +  G+
Sbjct: 498 GIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGH 548



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 78/347 (22%), Positives = 137/347 (39%), Gaps = 24/347 (6%)

Query: 295 SFSDVIHACGRTQNSGL--AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
           +++ VI  CG  Q   +  A++L  +M    L+P   TY   I     +  ++    +  
Sbjct: 295 TYTAVI--CGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHN 352

Query: 353 IMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT---NPKPFSAFLAACDTMD 409
            M Q  L P   T   L+    K  E+D A  LL ++ R     N   +++ +       
Sbjct: 353 QMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAG 412

Query: 410 KPERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
             ++A+K+   M      PD  TY  L              + + +     R + +   M
Sbjct: 413 NIDQAVKLMKDMEVAGFHPDAVTYTTLM-------------DAYCKSREMVRAHELLRQM 459

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQES 525
               +Q + ++   L+      GM+ +   L+++  +        TYN+++         
Sbjct: 460 LDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNM 519

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
               EI++ M   G+ P+  TYNI+I      R  K A  L   MV  GF     +Y AL
Sbjct: 520 RATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNLTVSSYNAL 579

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDV 632
           IK       F EA  L + +  EG+  D  +YN       ++G++++
Sbjct: 580 IKGFYKRKKFLEARELFEQMRREGLVADREIYNIFADINYDEGKMEL 626



 Score = 62.8 bits (151), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 83/194 (42%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TY  V+  L +      A ++F +M    + P+  TY  +ID        K A +L + M
Sbjct: 295 TYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQM 354

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           ++ G  P  +TYTAL   L   G+ D A  LL  +  +G+  ++  YN+++   C+ G I
Sbjct: 355 LQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNI 414

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEK 690
           D    +++ M      PD  T   +   Y        A E L+ +  R L   V T    
Sbjct: 415 DQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVL 474

Query: 691 RSDFEDLILAEDSE 704
            + F    + ED E
Sbjct: 475 MNGFCMSGMLEDGE 488



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 75/170 (44%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TYN V+  L +  +   A  + ++M + GI P+   Y  +ID    +    SA  L   M
Sbjct: 225 TYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEM 284

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
            +    P  +TYTA+I  L   G   EA  L   +  + +  D + Y  ++   C++G++
Sbjct: 285 QKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKM 344

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRML 680
                +  QM Q  + P+  T   +  G   CG  ++A E L  +  + L
Sbjct: 345 KEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGL 394



 Score = 45.8 bits (107), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 55/272 (20%), Positives = 110/272 (40%), Gaps = 9/272 (3%)

Query: 105 FVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSF 164
           +V++    M+ K +  N   Y  ++  LCK G + EA  ++  +    GI P   +Y + 
Sbjct: 206 WVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISE-GIAPDGVIYTTL 264

Query: 165 LGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELL-KLAVWQKNLSAVHEIWEDYIKHY 223
           +    KL ++  A    D M  R +  + +TYT ++  L    + + A     E   K  
Sbjct: 265 IDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRL 324

Query: 224 SLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYI-NRTSEGRLRSSRLDIPIP 282
                +    +  + +   +K A+     M+ + +   +      ++G  +   +D    
Sbjct: 325 EPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANE 384

Query: 283 LNALPVMKVLR---WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIV 339
           L      K L    ++++ +++   +  N   A +LM  M+  G  P + TY   + A  
Sbjct: 385 LLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYC 444

Query: 340 SDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
             R +    E+L+ M    L+P   T+ T +V
Sbjct: 445 KSREMVRAHELLRQMLDRELQP---TVVTFNV 473


>gi|357120470|ref|XP_003561950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Brachypodium distachyon]
          Length = 925

 Score = 89.7 bits (221), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 80/368 (21%), Positives = 157/368 (42%), Gaps = 52/368 (14%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           ++ VI+A  +  N   AE ++ ++   G++P + TY   I     +R L +  E+   M 
Sbjct: 231 YNSVINALCKDGNVRDAESIINKVFKSGMKPDTFTYTSMILGYCRNRDLDSAFEIFNRMD 290

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKPE 412
           +   +P  +T +TL      +  ++ A   + +++R         F+A + A   M + E
Sbjct: 291 EEGCEPNAATYSTLINGLCNSGRVNEALDFISEMTRHGVLPTVHTFTAPIVALCDMGRIE 350

Query: 413 RAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471
            A KIF  M++K  +P++ TY  L S                     +R++ + +     
Sbjct: 351 DAWKIFIDMKKKGCKPNVYTYTSLIS--------------------GQRVSRMAI----- 385

Query: 472 NIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEI 531
                      L   +  +G++   +             TYN +++ L+E  E   A+ +
Sbjct: 386 ----------GLFHRMSRDGVVPNTV-------------TYNALMNVLMENMEIDSALIV 422

Query: 532 FKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLD 591
           F  M   G  PN ++YN +I     I   + A ++++ M++    P  +TY  +IK   D
Sbjct: 423 FNMMGKHGCLPNTSSYNELIRGYCTIGDTEKAMSMLTNMLKGRPTPTLVTYNIIIKGYCD 482

Query: 592 YGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
            GD D A+ +L+L+   G   D   Y  ++   C+  ++++   +  +M    + P+  T
Sbjct: 483 SGDTDVAIRVLELMKANGCQPDEWSYTELISGFCKISKMELASGMFNEMMDRGLCPNEVT 542

Query: 652 CHFVFSGY 659
              + SGY
Sbjct: 543 YTALISGY 550



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 85/340 (25%), Positives = 144/340 (42%), Gaps = 50/340 (14%)

Query: 323 GLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLA 382
           GLQP+   Y+  I A+  D  +R+   ++  + ++ +KP   T  ++ +   +  +LD  
Sbjct: 223 GLQPNLLIYNSVINALCKDGNVRDAESIINKVFKSGMKPDTFTYTSMILGYCRNRDLD-- 280

Query: 383 EALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGN 441
                           SAF              +IF +M ++   P+  TY  L +   N
Sbjct: 281 ----------------SAF--------------EIFNRMDEEGCEPNAATYSTLINGLCN 310

Query: 442 VNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFC 501
                E  +  S+             M R+ +  +  +    + AL   G I +  + F 
Sbjct: 311 SGRVNEALDFISE-------------MTRHGVLPTVHTFTAPIVALCDMGRIEDAWKIFI 357

Query: 502 DSKTPLGTPTYNTVLHSLVEAQESHR-AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCF 560
           D K     P   T   SL+  Q   R A+ +F +M   G+ PN  TYN +++        
Sbjct: 358 DMKKKGCKPNVYTYT-SLISGQRVSRMAIGLFHRMSRDGVVPNTVTYNALMNVLMENMEI 416

Query: 561 KSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLL-YNT 619
            SA  + +MM + G  P T +Y  LI+     GD ++A+++L  + L+G P   L+ YN 
Sbjct: 417 DSALIVFNMMGKHGCLPNTSSYNELIRGYCTIGDTEKAMSMLTNM-LKGRPTPTLVTYNI 475

Query: 620 ILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
           I+K  C+ G  DV   ++E M  N  QPD  +   + SG+
Sbjct: 476 IIKGYCDSGDTDVAIRVLELMKANGCQPDEWSYTELISGF 515



 Score = 79.3 bits (194), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 94/464 (20%), Positives = 189/464 (40%), Gaps = 54/464 (11%)

Query: 228 FSLRKFVWSFTRLRDLKSAYETLQHM------VALAMMGKLYINRTSEGRLRSSRLDIPI 281
           F+    +  + R RDL SA+E    M         A    L     + GR+  + LD   
Sbjct: 264 FTYTSMILGYCRNRDLDSAFEIFNRMDEEGCEPNAATYSTLINGLCNSGRVNEA-LDFIS 322

Query: 282 PLNALPVMKVLRWSFSDVIHAC--GRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIV 339
            +    V+  +    + ++  C  GR ++   A ++ + M+  G +P+ +TY   I    
Sbjct: 323 EMTRHGVLPTVHTFTAPIVALCDMGRIED---AWKIFIDMKKKGCKPNVYTYTSLISG-- 377

Query: 340 SDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPK 396
             R  R  + +   M ++ + P   T   L     + +E+D A  + + + +     N  
Sbjct: 378 -QRVSRMAIGLFHRMSRDGVVPNTVTYNALMNVLMENMEIDSALIVFNMMGKHGCLPNTS 436

Query: 397 PFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQV 455
            ++  +    T+   E+A+ +   M + +  P + TY ++   + +              
Sbjct: 437 SYNELIRGYCTIGDTEKAMSMLTNMLKGRPTPTLVTYNIIIKGYCDSG------------ 484

Query: 456 DSAKRINAIEMDMARNNIQHSHISMKNLLKALG-------AEGMIRELI-QYFCDSKTPL 507
           D+   I  +E+ M  N  Q    S   L+           A GM  E++ +  C ++   
Sbjct: 485 DTDVAIRVLEL-MKANGCQPDEWSYTELISGFCKISKMELASGMFNEMMDRGLCPNEV-- 541

Query: 508 GTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALV 567
              TY  ++    + ++   A  + ++MK  G  PN  TYN++I   +    F  A  L 
Sbjct: 542 ---TYTALISGYCKDEKLDCAARMLERMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELC 598

Query: 568 SMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEK 627
            +M+ +   P  +TY+ +I  L + G    AL + + +   G   ++  Y+++++   ++
Sbjct: 599 KVMLEEKISPDVVTYSTVINGLCNNGAIPLALEMFNKMVKHGCLPNLHTYSSLIQALGQE 658

Query: 628 GRIDVIEFIIEQMHQNKVQPDPST-------CHFVFSGYVNCGF 664
           GR++  E +  ++ +  + PD  T       C  V SG V+  F
Sbjct: 659 GRVEEAEEMFSELKKQGLIPDEVTYVKMIEVC--VMSGKVDRAF 700



 Score = 72.4 bits (176), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 89/196 (45%), Gaps = 6/196 (3%)

Query: 483 LLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHR---AMEIFKQMKTCG 539
           L+  L   G + E + +  +       PT +T    +V   +  R   A +IF  MK  G
Sbjct: 304 LINGLCNSGRVNEALDFISEMTRHGVLPTVHTFTAPIVALCDMGRIEDAWKIFIDMKKKG 363

Query: 540 IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEAL 599
             PN  TY  +I   S  R  + A  L   M RDG  P T+TY AL+ +L++  + D AL
Sbjct: 364 CKPNVYTYTSLI---SGQRVSRMAIGLFHRMSRDGVVPNTVTYNALMNVLMENMEIDSAL 420

Query: 600 NLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
            + +++   G   +   YN +++  C  G  +    ++  M + +  P   T + +  GY
Sbjct: 421 IVFNMMGKHGCLPNTSSYNELIRGYCTIGDTEKAMSMLTNMLKGRPTPTLVTYNIIIKGY 480

Query: 660 VNCGFHNSAMEALQVL 675
            + G  + A+  L+++
Sbjct: 481 CDSGDTDVAIRVLELM 496



 Score = 66.2 bits (160), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 108/540 (20%), Positives = 216/540 (40%), Gaps = 62/540 (11%)

Query: 151 RYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLS 210
           R G+ P L +YNS + A  K  ++  A   ++ +    +  +  TYT ++      ++L 
Sbjct: 221 REGLQPNLLIYNSVINALCKDGNVRDAESIINKVFKSGMKPDTFTYTSMILGYCRNRDLD 280

Query: 211 AVHEIW--------EDYIKHYSLSIFSL---------RKFVWSFTRLRDLKSAYETLQHM 253
           +  EI+        E     YS  I  L           F+   TR   L + +     +
Sbjct: 281 SAFEIFNRMDEEGCEPNAATYSTLINGLCNSGRVNEALDFISEMTRHGVLPTVHTFTAPI 340

Query: 254 VALAMMG------KLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQ 307
           VAL  MG      K++I+   +G                   K   ++++ +I      +
Sbjct: 341 VALCDMGRIEDAWKIFIDMKKKG------------------CKPNVYTYTSLISG---QR 379

Query: 308 NSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIA 367
            S +A  L  +M   G+ P++ TY+  +  ++ +  + + + V  +M ++   P  S+  
Sbjct: 380 VSRMAIGLFHRMSRDGVVPNTVTYNALMNVLMENMEIDSALIVFNMMGKHGCLPNTSSYN 439

Query: 368 TLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAA-CDTMDKPERAIKIFAKMR 422
            L        + + A ++L  + +   P P    ++  +   CD+ D  + AI++   M+
Sbjct: 440 ELIRGYCTIGDTEKAMSMLTNMLK-GRPTPTLVTYNIIIKGYCDSGDT-DVAIRVLELMK 497

Query: 423 -QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMK 481
               +PD  +Y  L S F  ++       MF+++        ++  +  N + ++ + + 
Sbjct: 498 ANGCQPDEWSYTELISGFCKISKMELASGMFNEM--------MDRGLCPNEVTYTAL-IS 548

Query: 482 NLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIP 541
              K    +   R +++    S       TYN ++H L +      A E+ K M    I 
Sbjct: 549 GYCKDEKLDCAAR-MLERMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMLEEKIS 607

Query: 542 PNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNL 601
           P+  TY+ +I+          A  + + MV+ G  P   TY++LI+ L   G  +EA  +
Sbjct: 608 PDVVTYSTVINGLCNNGAIPLALEMFNKMVKHGCLPNLHTYSSLIQALGQEGRVEEAEEM 667

Query: 602 LDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVN 661
              +  +G+  D + Y  +++     G++D     + +M     QP   T   +  G  N
Sbjct: 668 FSELKKQGLIPDEVTYVKMIEVCVMSGKVDRAFDFLGEMINAGCQPTLQTYDVLIKGLQN 727



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 69/151 (45%)

Query: 497 IQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSI 556
           +  F      +G  TY T+L  L +   +   M+ + Q+   G+ PN   YN +I+    
Sbjct: 181 LDMFSQRGPKMGLFTYTTLLIQLNKLNMTSTVMDRYHQILREGLQPNLLIYNSVINALCK 240

Query: 557 IRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLL 616
               + A ++++ + + G  P T TYT++I       D D A  + + +  EG   +   
Sbjct: 241 DGNVRDAESIINKVFKSGMKPDTFTYTSMILGYCRNRDLDSAFEIFNRMDEEGCEPNAAT 300

Query: 617 YNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
           Y+T++   C  GR++     I +M ++ V P
Sbjct: 301 YSTLINGLCNSGRVNEALDFISEMTRHGVLP 331


>gi|125582060|gb|EAZ22991.1| hypothetical protein OsJ_06687 [Oryza sativa Japonica Group]
          Length = 466

 Score = 89.7 bits (221), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 82/338 (24%), Positives = 138/338 (40%), Gaps = 15/338 (4%)

Query: 314 QLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVEC 373
           +LM +M   G  P+  T+   I ++  +  + + +EVL+ M++   +P       +    
Sbjct: 130 ELMAEMVRKGCSPNEATFSMLISSLCQNNLVDSAVEVLEQMEKYGCEPDTVNYNIIINSL 189

Query: 374 SKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYE 433
           S+   +D A  LL+ +    +   F+A L      ++   A ++ A+M    R D    E
Sbjct: 190 SERGRVDDALRLLNSMVCKPDALGFNAVLKGFCRAERWHDASELIAQM---FRDDCPLIE 246

Query: 434 LLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMI 493
           + F++  +         M  Q         +   M R       ++  +LL     +G++
Sbjct: 247 MTFNILID---------MLCQNGLVNYATQVFEQMPRYRCTPDIVTYSSLLNGFSEQGLV 297

Query: 494 RELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC 553
              IQ F          +YN VL  L  A     A E+  +M     PPN  T+NI+I+ 
Sbjct: 298 EVAIQLFRSMPCKPDIFSYNAVLKGLCRAARWEDAGELIAEMVGKDCPPNEVTFNILINS 357

Query: 554 CSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHD 613
                    A  ++  M   G  P   TY ALI    + G  D+AL LL  +S +    D
Sbjct: 358 LCQKGLVDRAIEVLEQMPNYGSTPDIFTYNALINGFSEQGRLDDALKLLSTMSCK---PD 414

Query: 614 VLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
            + YN+ LK  C   R    E ++ +M +NK  P+  T
Sbjct: 415 AISYNSTLKGLCRAERWQDAEELVAEMLRNKCTPNEVT 452



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 78/371 (21%), Positives = 154/371 (41%), Gaps = 23/371 (6%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTI-ATLS 370
           A QL+ QM   G  P    Y   I        +   +++L  M     KP      A L 
Sbjct: 61  AVQLLDQMPRYGCTPDVVIYSTLINGFSEQGHVDQALDLLNTML---CKPNTVCYNAALK 117

Query: 371 VECSKALELDLAEALLDQISRCTNPK--PFSAFLAACDTMDKPERAIKIFAKMRQ-KLRP 427
             C      D+ E + + + +  +P    FS  +++    +  + A+++  +M +    P
Sbjct: 118 GLCIAERWEDIGELMAEMVRKGCSPNEATFSMLISSLCQNNLVDSAVEVLEQMEKYGCEP 177

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL 487
           D   Y ++      +N+  E G    +VD A R+  +   + + +    +  +K   +A 
Sbjct: 178 DTVNYNII------INSLSERG----RVDDALRL--LNSMVCKPDALGFNAVLKGFCRAE 225

Query: 488 GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATY 547
                   + Q F D   PL   T+N ++  L +    + A ++F+QM      P+  TY
Sbjct: 226 RWHDASELIAQMFRDD-CPLIEMTFNILIDMLCQNGLVNYATQVFEQMPRYRCTPDIVTY 284

Query: 548 NIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSL 607
           + +++  S     + A  L   M      P   +Y A++K L     +++A  L+  +  
Sbjct: 285 SSLLNGFSEQGLVEVAIQLFRSM---PCKPDIFSYNAVLKGLCRAARWEDAGELIAEMVG 341

Query: 608 EGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNS 667
           +  P + + +N ++   C+KG +D    ++EQM      PD  T + + +G+   G  + 
Sbjct: 342 KDCPPNEVTFNILINSLCQKGLVDRAIEVLEQMPNYGSTPDIFTYNALINGFSEQGRLDD 401

Query: 668 AMEALQVLSMR 678
           A++ L  +S +
Sbjct: 402 ALKLLSTMSCK 412



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/194 (23%), Positives = 82/194 (42%), Gaps = 11/194 (5%)

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLG-TP---TYNTVLHSLVEAQES 525
           RN    + ++    +++    G++   +Q   D     G TP    Y+T+++   E    
Sbjct: 35  RNRCPPNEVTFATQIRSFCQNGLLDRAVQLL-DQMPRYGCTPDVVIYSTLINGFSEQGHV 93

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
            +A+++   M      PN   YN  +    I   ++    L++ MVR G  P   T++ L
Sbjct: 94  DQALDLLNTMLC---KPNTVCYNAALKGLCIAERWEDIGELMAEMVRKGCSPNEATFSML 150

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           I  L      D A+ +L+ +   G   D + YN I+    E+GR+D    ++  M     
Sbjct: 151 ISSLCQNNLVDSAVEVLEQMEKYGCEPDTVNYNIIINSLSERGRVDDALRLLNSM---VC 207

Query: 646 QPDPSTCHFVFSGY 659
           +PD    + V  G+
Sbjct: 208 KPDALGFNAVLKGF 221



 Score = 52.8 bits (125), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 74/165 (44%), Gaps = 3/165 (1%)

Query: 509 TPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVS 568
           T TYNTVL  L  A++   A E+  +M     PPN  T+   I           A  L+ 
Sbjct: 7   TYTYNTVLKGLCIAKKWEEAEELMAEMIRNRCPPNEVTFATQIRSFCQNGLLDRAVQLLD 66

Query: 569 MMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
            M R G  P  + Y+ LI    + G  D+AL+LL+ +  +    + + YN  LK  C   
Sbjct: 67  QMPRYGCTPDVVIYSTLINGFSEQGHVDQALDLLNTMLCK---PNTVCYNAALKGLCIAE 123

Query: 629 RIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           R + I  ++ +M +    P+ +T   + S        +SA+E L+
Sbjct: 124 RWEDIGELMAEMVRKGCSPNEATFSMLISSLCQNNLVDSAVEVLE 168



 Score = 47.0 bits (110), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 91/473 (19%), Positives = 175/473 (36%), Gaps = 71/473 (15%)

Query: 121 NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLC 180
           N   +   +++ C+ G L+ A  L+  +  RYG  P + +Y++ +          H +  
Sbjct: 41  NEVTFATQIRSFCQNGLLDRAVQLLDQM-PRYGCTPDVVIYSTLING---FSEQGHVDQA 96

Query: 181 LDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYSLSIFSLRKFVWSFTR 239
           LDL+++ +   N V Y   LK     +    + E+  + + K  S +  +    + S  +
Sbjct: 97  LDLLNTMLCKPNTVCYNAALKGLCIAERWEDIGELMAEMVRKGCSPNEATFSMLISSLCQ 156

Query: 240 LRDLKSAYETLQHMVALA-----MMGKLYINRTSE-GRLRSS-RLDIPIPLNALPVMKVL 292
              + SA E L+ M         +   + IN  SE GR+  + RL     LN++ V K  
Sbjct: 157 NNLVDSAVEVLEQMEKYGCEPDTVNYNIIINSLSERGRVDDALRL-----LNSM-VCKPD 210

Query: 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
              F+ V+    R +    A +L+ QM          T++  I  +  +  +    +V +
Sbjct: 211 ALGFNAVLKGFCRAERWHDASELIAQMFRDDCPLIEMTFNILIDMLCQNGLVNYATQVFE 270

Query: 353 IMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPE 412
            M +    P   T                                +S+ L         E
Sbjct: 271 QMPRYRCTPDIVT--------------------------------YSSLLNGFSEQGLVE 298

Query: 413 RAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNN 472
            AI++F  M    +PDI +Y  +           + G + ++             M   +
Sbjct: 299 VAIQLFRSM--PCKPDIFSYNAVLKGLCRAARWEDAGELIAE-------------MVGKD 343

Query: 473 IQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAM 529
              + ++   L+ +L  +G++   I+          TP   TYN +++      E  R  
Sbjct: 344 CPPNEVTFNILINSLCQKGLVDRAIEVLEQMPNYGSTPDIFTYNALINGF---SEQGRLD 400

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTY 582
           +  K + T    P+A +YN  +        ++ A  LV+ M+R+   P  +T+
Sbjct: 401 DALKLLSTMSCKPDAISYNSTLKGLCRAERWQDAEELVAEMLRNKCTPNEVTF 453



 Score = 44.3 bits (103), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 49/92 (53%)

Query: 540 IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEAL 599
           + P+  TYN ++    I + ++ A  L++ M+R+   P  +T+   I+     G  D A+
Sbjct: 3   VAPDTYTYNTVLKGLCIAKKWEEAEELMAEMIRNRCPPNEVTFATQIRSFCQNGLLDRAV 62

Query: 600 NLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
            LLD +   G   DV++Y+T++    E+G +D
Sbjct: 63  QLLDQMPRYGCTPDVVIYSTLINGFSEQGHVD 94


>gi|297802850|ref|XP_002869309.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297315145|gb|EFH45568.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1114

 Score = 89.7 bits (221), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 113/504 (22%), Positives = 192/504 (38%), Gaps = 36/504 (7%)

Query: 169 AKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLS----AVHEIWEDYIKHYS 224
            K+  M +     DLM  R++ ++  TY  + K    +  L     A+ ++ E     + 
Sbjct: 134 GKIEEMAYV---FDLMQKRIIKRDTNTYLTIFKCLSVKGGLRQAPFALRKMRE---FGFV 187

Query: 225 LSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLN 284
           L+ +S    +    + R    A E  + M+       L    +    L   R DI   + 
Sbjct: 188 LNAYSYNGLIHLLLKSRFCTEAMEVYRRMILDGFRPSLQTYSSLMVGL-GKRRDIESVMG 246

Query: 285 ALPVMKVLR-----WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIV 339
            L  M+ L      ++F+  I   GR      A +++ +M   G  P   TY   I A+ 
Sbjct: 247 LLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALC 306

Query: 340 SDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFS 399
           + R L    EV   M+    KP   T  TL    S   +LD       ++ +  +     
Sbjct: 307 TARKLDCAKEVFAKMKTGRHKPDRVTYITLLDRFSDNRDLDSVNQFWSEMEKDGHVPDVV 366

Query: 400 AFLAACDTMDKPERAIKIFAKMR----QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQV 455
            F    D + K     + FAK+     Q + P++ TY  L      V+   +   +F  +
Sbjct: 367 TFTILVDALCKAGNFGEAFAKLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALEIFDNM 426

Query: 456 DSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTY--- 512
           +S               ++ +  +    +   G  G     ++ F   KT    P     
Sbjct: 427 ESL-------------GVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVAC 473

Query: 513 NTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVR 572
           N  L+SL +A     A +IF  +K  G+ P++ TYN+M+ C S +     A  L+S MV 
Sbjct: 474 NASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMVE 533

Query: 573 DGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDV 632
           +   P  +   +LI  L      DEA  +   +    +   V+ YNT+L    + G+I  
Sbjct: 534 NCCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQE 593

Query: 633 IEFIIEQMHQNKVQPDPSTCHFVF 656
              + E M Q    P+  T + +F
Sbjct: 594 AIELFEGMVQKGCPPNTITFNTLF 617



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 141/664 (21%), Positives = 270/664 (40%), Gaps = 61/664 (9%)

Query: 54  ATQMQIVDALCRGER-SRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRM 112
            T   ++DALC   +   A  +   +    H      +  +L+  + + D   V + W  
Sbjct: 296 VTYTVLIDALCTARKLDCAKEVFAKMKTGRHKPDRVTYITLLDRFSDNRDLDSVNQFWSE 355

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
           ME+     +   + +++ ALCK G   EA   +  + ++ GI P L  YN+ +    ++H
Sbjct: 356 MEKDGHVPDVVTFTILVDALCKAGNFGEAFAKLDVMRDQ-GILPNLHTYNTLICGLLRVH 414

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQK---NLSAVHEIWEDYIKHYSLSIFS 229
            +  A    D M+S  +G     YT ++ +  + K   ++SA+    +   K  + +I +
Sbjct: 415 RLDDALEIFDNMES--LGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVA 472

Query: 230 LRKFVWSFT---RLRDLKSAYETLQHM------VALAMMGKLY--INRTSEG-RLRSSRL 277
               ++S     R R+ K  +  L+ +      V   MM K Y  +    E  +L S  +
Sbjct: 473 CNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMV 532

Query: 278 DIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRA 337
           +     N      ++  S  + ++   R      A ++ ++M+ + L+P+  TY+  +  
Sbjct: 533 E-----NCCEPDVIVVNSLINTLYKADRVDE---AWKMFMRMKEMKLKPTVVTYNTLLAG 584

Query: 338 IVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLA-EALLDQISRCTNPK 396
           +  +  ++  +E+ + M Q    P   T  TL     K  E+ LA + L   +     P 
Sbjct: 585 LGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPD 644

Query: 397 PFS--AFLAACDTMDKPERAIKIFAKMRQKLRPDIRT-----------------YELLFS 437
            F+    +       + + A+  F +M++ + PD  T                 Y+++ +
Sbjct: 645 VFTYNTIIFGLVKNGQVKEAMCFFHQMKKLVYPDFVTLCTLLPGVVKAGLIEDAYKIIAN 704

Query: 438 -LFGNVNAP---YEEGNMFSQVDSAKRINAIEMD--MARNNIQHSHIS-----MKNLLKA 486
            L+   + P   + E  M S +  A   NA+     +  N I     S     ++   K 
Sbjct: 705 FLYSCADQPANLFWEDLMGSILAEAGIDNAVSFSERLVANGICRDGDSILVPIIRYSFKH 764

Query: 487 LGAEGMIRELIQYFC-DSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAA 545
             A G  R L + F  D       PTYN ++  L+EA     A ++F Q+K  G  P+ A
Sbjct: 765 NNASGA-RMLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKNTGCIPDVA 823

Query: 546 TYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNL-LDL 604
           TYN ++D             +   M      P T+T+  +I  L+  G+ D+AL+L  DL
Sbjct: 824 TYNFLLDAYGKSGKIDELFEIYKEMSAHECEPNTITHNIVISGLVKAGNVDDALDLYYDL 883

Query: 605 VSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGF 664
           +S          Y  ++    + GR+   + + E M     +P+ +  + + +G+   G 
Sbjct: 884 MSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMSDYGCRPNCAIYNILINGFGKAGE 943

Query: 665 HNSA 668
            ++A
Sbjct: 944 ADAA 947



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 92/422 (21%), Positives = 172/422 (40%), Gaps = 55/422 (13%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           +S++ +IH   +++    A ++  +M   G +PS  TY   +  +   R + + M +LK 
Sbjct: 191 YSYNGLIHLLLKSRFCTEAMEVYRRMILDGFRPSLQTYSSLMVGLGKRRDIESVMGLLKE 250

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQIS-RCTNPK--PFSAFLAACDTMDK 410
           M+   LKP   T         +A +++ A  +L ++      P    ++  + A  T  K
Sbjct: 251 METLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARK 310

Query: 411 PERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
            + A ++FAKM+  + +PD  TY  L              + FS       +N    +M 
Sbjct: 311 LDCAKEVFAKMKTGRHKPDRVTYITLL-------------DRFSDNRDLDSVNQFWSEME 357

Query: 470 RNNIQHSHISMKNLLKALGAEGMIREL---IQYFCDSKTPLGTPTYNTVLHSLVEAQESH 526
           ++      ++   L+ AL   G   E    +    D        TYNT++  L+      
Sbjct: 358 KDGHVPDVVTFTILVDALCKAGNFGEAFAKLDVMRDQGILPNLHTYNTLICGLLRVHRLD 417

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMID-----------------------CCSIIRCFKSA 563
            A+EIF  M++ G+ P A TY + ID                         +I+ C  S 
Sbjct: 418 DALEIFDNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASL 477

Query: 564 SAL-----------VSMMVRD-GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIP 611
            +L           +   ++D G  P ++TY  ++K     G+ DEA+ LL  +      
Sbjct: 478 YSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMVENCCE 537

Query: 612 HDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEA 671
            DV++ N+++    +  R+D    +  +M + K++P   T + + +G    G    A+E 
Sbjct: 538 PDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIEL 597

Query: 672 LQ 673
            +
Sbjct: 598 FE 599



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 74/334 (22%), Positives = 145/334 (43%), Gaps = 16/334 (4%)

Query: 325  QPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNL-KPQDSTIATLSVECSKALELDLAE 383
            QP++  ++  + +I+++ G+ N +   + +  N + +  DS +  +     K      A 
Sbjct: 712  QPANLFWEDLMGSILAEAGIDNAVSFSERLVANGICRDGDSILVPIIRYSFKHNNASGAR 771

Query: 384  ALLDQISRCTNPKP----FSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSL 438
             L ++ ++    +P    ++  +      D  E A  +F +++     PD+ TY  L   
Sbjct: 772  MLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKNTGCIPDVATYNFLLDA 831

Query: 439  FGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQ 498
            +G      + G +    +  K ++A E +   N I H +I +  L+KA   +  +     
Sbjct: 832  YG------KSGKIDELFEIYKEMSAHECE--PNTITH-NIVISGLVKAGNVDDALDLYYD 882

Query: 499  YFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIR 558
               D        TY  ++  L ++   + A ++F+ M   G  PN A YNI+I+      
Sbjct: 883  LMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMSDYGCRPNCAIYNILINGFGKAG 942

Query: 559  CFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYN 618
               +A AL   MV++G  P   TY+ L+  L   G  DE L+    +   G+  DV+ YN
Sbjct: 943  EADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFRELKESGLNPDVVCYN 1002

Query: 619  TILKKACEKGRIDVIEFIIEQMHQNK-VQPDPST 651
             I+    +  R++    +  +M +++ + PD  T
Sbjct: 1003 LIINGLGKFHRLEEALVLFNEMKKSRGITPDLYT 1036



 Score = 72.8 bits (177), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 92/204 (45%), Gaps = 3/204 (1%)

Query: 484 LKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGI 540
           ++ LG  G I E   +++   D        TY  ++ +L  A++   A E+F +MKT   
Sbjct: 267 IRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFAKMKTGRH 326

Query: 541 PPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALN 600
            P+  TY  ++D  S  R   S +   S M +DG  P  +T+T L+  L   G+F EA  
Sbjct: 327 KPDRVTYITLLDRFSDNRDLDSVNQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFA 386

Query: 601 LLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYV 660
            LD++  +GI  ++  YNT++       R+D    I + M    V+P   T       Y 
Sbjct: 387 KLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALEIFDNMESLGVKPTAYTYIVFIDYYG 446

Query: 661 NCGFHNSAMEALQVLSMRMLCEEV 684
             G   SA+E  + +  + +   +
Sbjct: 447 KSGDSVSALETFEKMKTKGIAPNI 470



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 136/641 (21%), Positives = 252/641 (39%), Gaps = 82/641 (12%)

Query: 106 VMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFL 165
           VM   + ME   +  N   + + ++ L + G + EA  ++  + +  G  P +  Y   +
Sbjct: 244 VMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDE-GCGPDVVTYTVLI 302

Query: 166 GACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSL 225
            A      +  A      M +     + VTY  LL      ++L +V++ W +  K   +
Sbjct: 303 DALCTARKLDCAKEVFAKMKTGRHKPDRVTYITLLDRFSDNRDLDSVNQFWSEMEKDGHV 362

Query: 226 -SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYI-NRTSEGRLRSSRLDIPIP- 282
             + +    V +  +  +   A+  L  M    ++  L+  N    G LR  RLD  +  
Sbjct: 363 PDVVTFTILVDALCKAGNFGEAFAKLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALEI 422

Query: 283 ---LNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIV 339
              + +L V K   +++   I   G++ +S  A +   +M++ G+ P+    +  + ++ 
Sbjct: 423 FDNMESLGV-KPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLA 481

Query: 340 SDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVEC-SKALELDLAEALLDQ-ISRCTNPKP 397
                R   ++   ++   L P DS    + ++C SK  E+D A  LL + +  C  P  
Sbjct: 482 KAGRDREAKQIFYGLKDIGLVP-DSVTYNMMMKCYSKVGEIDEAIKLLSEMVENCCEPDV 540

Query: 398 F--SAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMF-S 453
              ++ +      D+ + A K+F +M++ KL+P + TY  L +  G      E   +F  
Sbjct: 541 IVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEG 600

Query: 454 QVDSAKRINAIEMD-----MARNNIQHSHISMKNLLK------------------ALGAE 490
            V      N I  +     + +N+     +++K L K                   L   
Sbjct: 601 MVQKGCPPNTITFNTLFDCLCKND--EVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKN 658

Query: 491 GMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQ-MKTCGIPP---- 542
           G ++E + +F   K  L  P   T  T+L  +V+A     A +I    + +C   P    
Sbjct: 659 GQVKEAMCFFHQMKK-LVYPDFVTLCTLLPGVVKAGLIEDAYKIIANFLYSCADQPANLF 717

Query: 543 ---------------NAATYNIMIDCCSIIR------------CFK-----SASALVSMM 570
                          NA +++  +    I R             FK      A  L    
Sbjct: 718 WEDLMGSILAEAGIDNAVSFSERLVANGICRDGDSILVPIIRYSFKHNNASGARMLFEKF 777

Query: 571 VRD-GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
            +D G  P+  TY  LI  LL+    + A ++   V   G   DV  YN +L    + G+
Sbjct: 778 TKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKNTGCIPDVATYNFLLDAYGKSGK 837

Query: 630 IDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAME 670
           ID +  I ++M  ++ +P+  T + V SG V  G  + A++
Sbjct: 838 IDELFEIYKEMSAHECEPNTITHNIVISGLVKAGNVDDALD 878



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 131/616 (21%), Positives = 224/616 (36%), Gaps = 93/616 (15%)

Query: 90   FFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLG 149
            +   ++Y  +S D +  +ET+  M+ K I  N       + +L K G   EA  + Y L 
Sbjct: 438  YIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLK 497

Query: 150  ERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNL 209
            +  G+ P    YN  +   +K+  +  A   L  M       + +    L+   +++ + 
Sbjct: 498  D-IGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMVENCCEPDVIVVNSLIN-TLYKAD- 554

Query: 210  SAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSE 269
              V E W+                   F R++++K     + +   LA +GK    +  E
Sbjct: 555  -RVDEAWK------------------MFMRMKEMKLKPTVVTYNTLLAGLGK--NGKIQE 593

Query: 270  G-RLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSS 328
               L    +    P N +        +F+ +     +     LA +++ +M  +G  P  
Sbjct: 594  AIELFEGMVQKGCPPNTI--------TFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDV 645

Query: 329  HTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLA------ 382
             TY+  I  +V +  ++  M     M++  + P   T+ TL     KA  ++ A      
Sbjct: 646  FTYNTIIFGLVKNGQVKEAMCFFHQMKKL-VYPDFVTLCTLLPGVVKAGLIEDAYKIIAN 704

Query: 383  --------------EALLDQI---SRCTNPKPFSAFLAA---CDTMD------------- 409
                          E L+  I   +   N   FS  L A   C   D             
Sbjct: 705  FLYSCADQPANLFWEDLMGSILAEAGIDNAVSFSERLVANGICRDGDSILVPIIRYSFKH 764

Query: 410  -KPERAIKIFAKMRQKL--RPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM 466
                 A  +F K  + L  +P + TY LL       +      ++F QV +   I     
Sbjct: 765  NNASGARMLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKNTGCIP---- 820

Query: 467  DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQ 523
            D+A  N          LL A G  G I EL + + +       P   T+N V+  LV+A 
Sbjct: 821  DVATYNF---------LLDAYGKSGKIDELFEIYKEMSAHECEPNTITHNIVISGLVKAG 871

Query: 524  ESHRAMEIFKQ-MKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTY 582
                A++++   M      P A TY  +ID  S       A  L   M   G  P    Y
Sbjct: 872  NVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMSDYGCRPNCAIY 931

Query: 583  TALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642
              LI      G+ D A  L   +  EG+  D+  Y+ ++   C  GR+D       ++ +
Sbjct: 932  NILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFRELKE 991

Query: 643  NKVQPDPSTCHFVFSG 658
            + + PD    + + +G
Sbjct: 992  SGLNPDVVCYNLIING 1007



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 79/365 (21%), Positives = 144/365 (39%), Gaps = 24/365 (6%)

Query: 318 QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKAL 377
           +M+  G   ++++Y+G I  ++  R     MEV + M  +  +P   T ++L V   K  
Sbjct: 180 KMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILDGFRPSLQTYSSLMVGLGKRR 239

Query: 378 ELDLAEALLDQISRCT---NPKPFSAFLAACDTMDKPERAIKIFAKMR-QKLRPDIRTYE 433
           +++    LL ++       N   F+  +       K   A +I  +M  +   PD+ TY 
Sbjct: 240 DIESVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYT 299

Query: 434 LLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMI 493
           +L                  ++D AK + A +M   R+  +   ++   LL        +
Sbjct: 300 VLIDALCTAR----------KLDCAKEVFA-KMKTGRH--KPDRVTYITLLDRFSDNRDL 346

Query: 494 RELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIM 550
             + Q++ + +     P   T+  ++ +L +A     A      M+  GI PN  TYN +
Sbjct: 347 DSVNQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFAKLDVMRDQGILPNLHTYNTL 406

Query: 551 IDCCSIIRCFKSASAL--VSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLE 608
           I  C ++R  +   AL     M   G  P   TY   I      GD   AL   + +  +
Sbjct: 407 I--CGLLRVHRLDDALEIFDNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTK 464

Query: 609 GIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSA 668
           GI  +++  N  L    + GR    + I   +    + PD  T + +   Y   G  + A
Sbjct: 465 GIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEA 524

Query: 669 MEALQ 673
           ++ L 
Sbjct: 525 IKLLS 529



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 66/300 (22%), Positives = 134/300 (44%), Gaps = 22/300 (7%)

Query: 295  SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVL-KI 353
            +++ ++ A G++       ++  +M +   +P++ T++  I  +V    + + +++   +
Sbjct: 824  TYNFLLDAYGKSGKIDELFEIYKEMSAHECEPNTITHNIVISGLVKAGNVDDALDLYYDL 883

Query: 354  MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR--C-TNPKPFSAFLAACDTMDK 410
            M   +  P   T   L    SK+  L  A+ L + +S   C  N   ++  +       +
Sbjct: 884  MSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMSDYGCRPNCAIYNILINGFGKAGE 943

Query: 411  PERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
             + A  +F +M ++ +RPD++TY +L      V    E  + F ++  +     +  D+ 
Sbjct: 944  ADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFRELKES----GLNPDVV 999

Query: 470  RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLG-TP---TYNTVLHSLVEAQES 525
              N+         ++  LG    + E +  F + K   G TP   TYN+++ +L  A   
Sbjct: 1000 CYNL---------IINGLGKFHRLEEALVLFNEMKKSRGITPDLYTYNSLILNLGIAGMV 1050

Query: 526  HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
              A +I+ +++  G+ PN  T+N +I   S+    + A A+   MV  GF P T TY  L
Sbjct: 1051 EEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTYEQL 1110



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 70/291 (24%), Positives = 118/291 (40%), Gaps = 32/291 (10%)

Query: 311  LAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLS 370
            +A+ + LQ+++ G  P   TY+  + A      +    E+ K M  +  +P   T   + 
Sbjct: 805  IAQDVFLQVKNTGCIPDVATYNFLLDAYGKSGKIDELFEIYKEMSAHECEPNTITHNIVI 864

Query: 371  VECSKALELDLAEALLDQISRCTNPKPFSAFLAAC------DTMDKPER---AIKIFAKM 421
                KA  +D A   LD      + + FS    AC      D + K  R   A ++F  M
Sbjct: 865  SGLVKAGNVDDA---LDLYYDLMSDRDFSP--TACTYGPLIDGLSKSGRLYEAKQLFEGM 919

Query: 422  RQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISM 480
                 RP+   Y +L + FG             + D+A    A+   M +  ++    + 
Sbjct: 920  SDYGCRPNCAIYNILINGFGKA----------GEADAA---CALFKRMVKEGVRPDLKTY 966

Query: 481  KNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKT 537
              L+  L   G + E + YF + K     P    YN +++ L +      A+ +F +MK 
Sbjct: 967  SVLVDCLCMVGRVDEGLHYFRELKESGLNPDVVCYNLIINGLGKFHRLEEALVLFNEMKK 1026

Query: 538  C-GIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
              GI P+  TYN +I    I    + A  + + + R G  P   T+ ALI+
Sbjct: 1027 SRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIR 1077


>gi|357130063|ref|XP_003566676.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 822

 Score = 89.7 bits (221), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 91/377 (24%), Positives = 157/377 (41%), Gaps = 21/377 (5%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           S++ VIH   R      A  L  +M   G+ P   TY  +I A+   R +     VL+ M
Sbjct: 229 SYNTVIHGFFREGEVSKACNLFHEMMQQGVVPDVVTYSSYIDALCKARAMDKAELVLRQM 288

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQIS-RCTNPKPFS--AFLAACDTMDKP 411
             N  +P   T   +    S   +      +  +++ R   P  F+  +++++     K 
Sbjct: 289 ISNGFEPDKVTYNCMIHGYSILGQWKETAGMFREMTRRGLMPDIFTCNSYMSSLCKHGKS 348

Query: 412 ERAIKIFAKMRQKL-RPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           + A + F  M  K  +PD+ TY +L   +       +  N+F+ ++     N I  D + 
Sbjct: 349 KEAAEFFDSMAAKGHKPDLVTYSVLLHGYAAEGYVVDMLNLFNSMEG----NGIVADHSV 404

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHR 527
            NI         L+ A G  GM+ E +  F   +     P   TY TV+ +         
Sbjct: 405 YNI---------LIDAYGKRGMMDEAMLIFTQMQERGVMPDAWTYGTVIAAFSRMGRLAD 455

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGF-YPQTMTYTALI 586
           AM+ F QM   G+ P+   YN +I    +      A  L+S M+  G   P T+ + ++I
Sbjct: 456 AMDKFNQMIAMGLKPDTIVYNSLIQGFCMHGNLVKAKELISEMMSRGIPRPNTVFFNSII 515

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
             L   G   EA ++ DLV   G   DV+ +N+++      G+++    +++ M    ++
Sbjct: 516 NSLCKEGRVVEAQDIFDLVIHIGERPDVITFNSLIDGYGLVGKMEKAFGVLDAMISVGIE 575

Query: 647 PDPSTCHFVFSGYVNCG 663
           PD  T   +  GY   G
Sbjct: 576 PDVVTYSALLDGYCRNG 592



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 132/604 (21%), Positives = 236/604 (39%), Gaps = 72/604 (11%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y  ++    + G + +A NL + + ++ G+ P +  Y+S++ A  K  +M  A L L  M
Sbjct: 230 YNTVIHGFFREGEVSKACNLFHEMMQQ-GVVPDVVTYSSYIDALCKARAMDKAELVLRQM 288

Query: 185 DSRMVGKNEVTYTELLK----LAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRL 240
            S     ++VTY  ++     L  W++      E+     +     IF+   ++ S  + 
Sbjct: 289 ISNGFEPDKVTYNCMIHGYSILGQWKETAGMFREMTR---RGLMPDIFTCNSYMSSLCKH 345

Query: 241 RDLKSAYETLQHMVA------LAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVL-- 292
              K A E    M A      L     L     +EG +    +D+    N++    ++  
Sbjct: 346 GKSKEAAEFFDSMAAKGHKPDLVTYSVLLHGYAAEGYV----VDMLNLFNSMEGNGIVAD 401

Query: 293 RWSFSDVIHACGRTQNSGLAEQLML---QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGME 349
              ++ +I A G+    G+ ++ ML   QMQ  G+ P + TY   I A      L + M+
Sbjct: 402 HSVYNILIDAYGK---RGMMDEAMLIFTQMQERGVMPDAWTYGTVIAAFSRMGRLADAMD 458

Query: 350 VLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFL-AACDTM 408
               M    LKP      +L         L  A+ L+ ++     P+P + F  +  +++
Sbjct: 459 KFNQMIAMGLKPDTIVYNSLIQGFCMHGNLVKAKELISEMMSRGIPRPNTVFFNSIINSL 518

Query: 409 DKPERAIK---IF-AKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAI 464
            K  R ++   IF   +    RPD+ T+  L   +G V    +    F  +D+   +  I
Sbjct: 519 CKEGRVVEAQDIFDLVIHIGERPDVITFNSLIDGYGLVGKMEKA---FGVLDAMISV-GI 574

Query: 465 EMD--------------------------MARNNIQHSHISMKNLLKAL-------GAEG 491
           E D                          M    ++ + I+   +L  L       GA+ 
Sbjct: 575 EPDVVTYSALLDGYCRNGRIDDGLILFREMLSKGVKPTTITYGIILHGLFNDGRTVGAKK 634

Query: 492 MIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI 551
           M  E+I+    S T +   T   +L  L        A+ +FK++    +  N A  N MI
Sbjct: 635 MCHEMIE----SGTTMDISTCGIILGGLCRNNCDDEAIALFKKLGAMNVKFNIAIINTMI 690

Query: 552 DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIP 611
           D    +R  + A+ L   +   G  P   TY  +I  LL  G  +EA N+  L+   G  
Sbjct: 691 DAMYKVRKREEANELFDSISATGLVPNASTYGVMITNLLKEGSVEEADNMFSLMEKSGCA 750

Query: 612 HDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEA 671
               L N I++   EKG I      + ++    +  + ST   + S +   G +   +++
Sbjct: 751 PSSRLLNNIIRVLLEKGEISKAGNYLSKVDGKTISLEASTASLMLSLFSRKGKYREQIKS 810

Query: 672 LQVL 675
           L  +
Sbjct: 811 LPAM 814



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 74/324 (22%), Positives = 130/324 (40%), Gaps = 44/324 (13%)

Query: 385 LLDQISRCTNPKP---FSAFLAA-------CDTMDKPERAIKIFAKM-RQKLRPDIR--- 430
           L D++ R T P P    + FL A           D P  A+ +F ++ R++ RP +    
Sbjct: 59  LFDELLRQTTPVPERALNGFLTALARAPSSATCRDGPSLAVALFNRICREEARPRVALPT 118

Query: 431 --TYELL-------------FSLFG-----NVNAPYEEGNMFSQ-VDSAKR----INAIE 465
             TY +L             F+LFG      +       N+  + +  AKR    +N + 
Sbjct: 119 VCTYNILMDCCCRAHRPTVGFALFGRFLKTGLKTDVIVANILLKCLCHAKRSDDAVNVLL 178

Query: 466 MDMARNNIQHSHISMKNLLKALGAEGMIRELIQ--YFCDSKTPLGTP---TYNTVLHSLV 520
             M    ++   IS   +LK+L  +   +  +   +    K+   +P   +YNTV+H   
Sbjct: 179 HRMPELGVEPDTISYSTVLKSLCEDSRSQRALDLLHTMVKKSGGCSPNVVSYNTVIHGFF 238

Query: 521 EAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTM 580
              E  +A  +F +M   G+ P+  TY+  ID     R    A  ++  M+ +GF P  +
Sbjct: 239 REGEVSKACNLFHEMMQQGVVPDVVTYSSYIDALCKARAMDKAELVLRQMISNGFEPDKV 298

Query: 581 TYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQM 640
           TY  +I      G + E   +   ++  G+  D+   N+ +   C+ G+        + M
Sbjct: 299 TYNCMIHGYSILGQWKETAGMFREMTRRGLMPDIFTCNSYMSSLCKHGKSKEAAEFFDSM 358

Query: 641 HQNKVQPDPSTCHFVFSGYVNCGF 664
                +PD  T   +  GY   G+
Sbjct: 359 AAKGHKPDLVTYSVLLHGYAAEGY 382



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 70/353 (19%), Positives = 141/353 (39%), Gaps = 31/353 (8%)

Query: 315 LMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQN------NLKPQDSTIAT 368
           L+ +M  LG++P + +Y   ++++  D   +  +++L  M +       N+   ++ I  
Sbjct: 177 LLHRMPELGVEPDTISYSTVLKSLCEDSRSQRALDLLHTMVKKSGGCSPNVVSYNTVIHG 236

Query: 369 LSVECSKALELDLAEALLDQISRCTNPKPFSAFLAA---CDTMDKPERAIKIFAKMRQKL 425
              E   +   +L   ++ Q     +   +S+++ A      MDK E  ++    +    
Sbjct: 237 FFREGEVSKACNLFHEMMQQ-GVVPDVVTYSSYIDALCKARAMDKAELVLR--QMISNGF 293

Query: 426 RPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLK 485
            PD  TY  +   +  +    E   MF +             M R  +     +  + + 
Sbjct: 294 EPDKVTYNCMIHGYSILGQWKETAGMFRE-------------MTRRGLMPDIFTCNSYMS 340

Query: 486 ALGAEGMIRELIQYFCDSKTPLGTP----TYNTVLHSLVEAQESHRAMEIFKQMKTCGIP 541
           +L   G  +E  ++F DS    G      TY+ +LH           + +F  M+  GI 
Sbjct: 341 SLCKHGKSKEAAEFF-DSMAAKGHKPDLVTYSVLLHGYAAEGYVVDMLNLFNSMEGNGIV 399

Query: 542 PNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNL 601
            + + YNI+ID          A  + + M   G  P   TY  +I      G   +A++ 
Sbjct: 400 ADHSVYNILIDAYGKRGMMDEAMLIFTQMQERGVMPDAWTYGTVIAAFSRMGRLADAMDK 459

Query: 602 LDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHF 654
            + +   G+  D ++YN++++  C  G +   + +I +M    + P P+T  F
Sbjct: 460 FNQMIAMGLKPDTIVYNSLIQGFCMHGNLVKAKELISEMMSRGI-PRPNTVFF 511



 Score = 43.5 bits (101), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 65/303 (21%), Positives = 115/303 (37%), Gaps = 15/303 (4%)

Query: 379 LDLAEALLDQISRCT-NPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLF 436
           LDL   ++ +   C+ N   ++  +       +  +A  +F +M +Q + PD+ TY    
Sbjct: 210 LDLLHTMVKKSGGCSPNVVSYNTVIHGFFREGEVSKACNLFHEMMQQGVVPDVVTYSSYI 269

Query: 437 SLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIREL 496
                  A  +   +  Q+ S    N  E D    N      S+    K     GM RE+
Sbjct: 270 DALCKARAMDKAELVLRQMIS----NGFEPDKVTYNCMIHGYSILGQWKE--TAGMFREM 323

Query: 497 IQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSI 556
            +       P    T N+ + SL +  +S  A E F  M   G  P+  TY++++   + 
Sbjct: 324 TRR---GLMP-DIFTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPDLVTYSVLLHGYAA 379

Query: 557 IRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLL 616
                    L + M  +G       Y  LI      G  DEA+ +   +   G+  D   
Sbjct: 380 EGYVVDMLNLFNSMEGNGIVADHSVYNILIDAYGKRGMMDEAMLIFTQMQERGVMPDAWT 439

Query: 617 YNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
           Y T++      GR+        QM    ++PD    + +  G+     H + ++A +++S
Sbjct: 440 YGTVIAAFSRMGRLADAMDKFNQMIAMGLKPDTIVYNSLIQGFC---MHGNLVKAKELIS 496

Query: 677 MRM 679
             M
Sbjct: 497 EMM 499


>gi|302826367|ref|XP_002994672.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
 gi|300137182|gb|EFJ04264.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
          Length = 816

 Score = 89.7 bits (221), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 144/352 (40%), Gaps = 31/352 (8%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ +IH      +   A +L   M   G  PS  TY+  I A      L    +++K M
Sbjct: 360 AYTSLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKM 419

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR--CT-NPKPFSAFL--------- 402
            ++   P   T  T+     K+  ++ A  L +++ R  CT N +  +  +         
Sbjct: 420 IEDGHVPDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKI 479

Query: 403 -AACDTMDKPERAIKIFAKMRQKLR-PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKR 460
             AC    K + A ++  +M      PD+ TY  L S   ++          ++VD A+ 
Sbjct: 480 DQACQR-GKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSI----------ARVDDARH 528

Query: 461 INAIEMDMARNNIQHSHISMKNLLKALGAEGMI---RELIQYFCDSKTPLGTPTYNTVLH 517
           +  +E DM +   + + ++   L+  L   G I   RE++     S       TYNT++H
Sbjct: 529 L--LE-DMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVH 585

Query: 518 SLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYP 577
               A ++ RA E+   M   G+ PN  TY  ++           A  + + M   G  P
Sbjct: 586 GHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAP 645

Query: 578 QTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
              TYTALI      G  D  L L   +   GI  D ++Y T+  + C+ GR
Sbjct: 646 NLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGR 697



 Score = 79.3 bits (194), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 77/317 (24%), Positives = 131/317 (41%), Gaps = 43/317 (13%)

Query: 409 DKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQV------------ 455
           D+ + A+++F KM ++ + PD  +Y +L           +  N+F ++            
Sbjct: 302 DRIDEAVQMFEKMNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAY 361

Query: 456 -------------DSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRE---LIQY 499
                        D A+ + A   DM R     S ++   ++ A    GM+ E   LI+ 
Sbjct: 362 TSLIHGLCMANSFDDARELFA---DMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKK 418

Query: 500 FCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYN-IMIDCCSIIR 558
             +        TYNTV+  L ++     A+ +F +M+  G  PN  ++N I++  C   +
Sbjct: 419 MIEDGHVPDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSK 478

Query: 559 C--------FKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL-DLVSLEG 609
                       A  L+  M  DG  P  +TY+ LI  L      D+A +LL D+V  + 
Sbjct: 479 IDQACQRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQC 538

Query: 610 IPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAM 669
            P  V+  NT++   C+ GRI     +++ M  +   PD  T + +  G+   G    A 
Sbjct: 539 KPT-VVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERAR 597

Query: 670 EALQVLSMRMLCEEVST 686
           E L  +  R L   V T
Sbjct: 598 ELLSDMVARGLAPNVVT 614



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 71/369 (19%), Positives = 141/369 (38%), Gaps = 11/369 (2%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           WS+  +I    +      A  L  ++   G+ PS+  Y   I  +       +  E+   
Sbjct: 324 WSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFAD 383

Query: 354 MQQNNLKPQDSTI-ATLSVECSKAL---ELDLAEALLDQISRCTNPKPFSAFLAACDTMD 409
           M +    P   T    +   C + +     DL + +++      +   ++  +       
Sbjct: 384 MNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIED-GHVPDVVTYNTVMDGLCKSS 442

Query: 410 KPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
           + E A+ +F +M R    P+ R++  +  L     +  ++     ++D A R+     D 
Sbjct: 443 RVEEALLLFNEMERLGCTPNRRSHNTII-LGLCQQSKIDQACQRGKLDEAFRLLKRMTDD 501

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRA 528
                  ++ ++ + L ++      R L++     +      T NT++H L +A     A
Sbjct: 502 GHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEA 561

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
            E+   M + G  P+  TYN ++         + A  L+S MV  G  P  +TYTAL+  
Sbjct: 562 REVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSG 621

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
           L       EA  +   +   G   ++  Y  ++   C  G++D    +  +M    + PD
Sbjct: 622 LCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPD 681

Query: 649 PSTCHFVFS 657
               H V+ 
Sbjct: 682 ----HVVYG 686


>gi|297741319|emb|CBI32450.3| unnamed protein product [Vitis vinifera]
          Length = 851

 Score = 89.7 bits (221), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 140/322 (43%), Gaps = 20/322 (6%)

Query: 315 LMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECS 374
           L+  M S G+QP+  +Y+  I  +  +  ++   E+L+ M      P + T  TL     
Sbjct: 67  LLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYC 126

Query: 375 KALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPE---RAIKIFAKMR-QKLRPDIR 430
           K      A  +  ++ R         + A  ++M K     RA++ F +MR + LRP+ R
Sbjct: 127 KEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNER 186

Query: 431 TYELL---FSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL 487
           TY  L   FS  G +N  Y   N  ++   +  +      +  N   H H  ++ + +AL
Sbjct: 187 TYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSV------VTYNAFIHGHCVLERMEEAL 240

Query: 488 GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATY 547
           G       ++Q   +        +Y+T++       E  RA ++ ++M   G+ P+A TY
Sbjct: 241 G-------VVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTY 293

Query: 548 NIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSL 607
           + +I     +R    A  L   M+  G  P   TYT LI      GD ++AL+L D +  
Sbjct: 294 SSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIH 353

Query: 608 EGIPHDVLLYNTILKKACEKGR 629
           +G   D + Y+ ++    ++ R
Sbjct: 354 KGFLPDAVTYSVLINGLNKQAR 375



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 61/266 (22%), Positives = 111/266 (41%), Gaps = 17/266 (6%)

Query: 412 ERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           ++ +  F +M R    P++ TY  L   +  +           ++D A     +   M+ 
Sbjct: 27  QKGLGCFGEMERNGCLPNVVTYNTLIDAYCKM----------GRIDEAF---GLLKSMSS 73

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHR 527
             +Q + IS   ++  L  EG ++E  +   +      TP   TYNT+L+   +    H+
Sbjct: 74  KGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQ 133

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A+ I  +M   G+ P+  TY  +I+     R    A      M   G  P   TYT LI 
Sbjct: 134 ALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLID 193

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
                G  +EA  +L+ ++  G    V+ YN  +   C   R++    ++++M +  + P
Sbjct: 194 GFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAP 253

Query: 648 DPSTCHFVFSGYVNCGFHNSAMEALQ 673
           D  +   + SG+   G  + A +  Q
Sbjct: 254 DVVSYSTIISGFCRKGELDRAFQMKQ 279



 Score = 72.8 bits (177), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 72/170 (42%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TYN ++       E  + +  F +M+  G  PN  TYN +ID    +     A  L+  M
Sbjct: 12  TYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSM 71

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
              G  P  ++Y  +I  L   G   EA  +L+ +  +G   D + YNT+L   C++G  
Sbjct: 72  SSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNF 131

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRML 680
                I  +M +N V P   T   + +        N AME    + +R L
Sbjct: 132 HQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGL 181



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 106/493 (21%), Positives = 183/493 (37%), Gaps = 70/493 (14%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y  ++ A CK G ++EA  L+  +  + G+ P L  YN  +    +  SM  A   L+ M
Sbjct: 48  YNTLIDAYCKMGRIDEAFGLLKSMSSK-GMQPNLISYNVIINGLCREGSMKEAWEILEEM 106

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH-YSLSIFSLRKFVWSFTRLRDL 243
             +    +EVTY  LL     + N      I  + +++  S S+ +    + S  + R+L
Sbjct: 107 GYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNL 166

Query: 244 KSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHAC 303
             A E    M                 R+R  R +                +++ +I   
Sbjct: 167 NRAMEFFDQM-----------------RIRGLRPN--------------ERTYTTLIDGF 195

Query: 304 GRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQD 363
            R      A +++ +M   G  PS  TY+ FI        +   + V++ M +  L P  
Sbjct: 196 SRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDV 255

Query: 364 STIATLSVECSKALELDLAEALLDQ-ISRCTNPKP--FSAFLAACDTMDKPERAIKIFAK 420
            + +T+     +  ELD A  +  + + +  +P    +S+ +     M +   A  +  +
Sbjct: 256 VSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQE 315

Query: 421 M-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHIS 479
           M    L PD  TY  L      +NA   EG++   +        +  +M         ++
Sbjct: 316 MLDMGLPPDEFTYTTL------INAYCVEGDLNKALH-------LHDEMIHKGFLPDAVT 362

Query: 480 MKNLLKALGAEGMIRE----LIQYFCDSKTPLGTPTYNTVLH--SLVEAQES-------- 525
              L+  L  +   RE    L +   +   P    TY+T++   S +E +          
Sbjct: 363 YSVLINGLNKQARTREAKRLLFKLIYEESVPSDV-TYDTLIENCSNIEFKSVVALIKGFC 421

Query: 526 -----HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTM 580
                H A  +F+ M      P  A YN++I           A  L   M+  GF P T+
Sbjct: 422 MKGLMHEADRVFESMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTV 481

Query: 581 TYTALIKILLDYG 593
           T   LIK L   G
Sbjct: 482 TVITLIKALFKEG 494



 Score = 48.1 bits (113), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 27/109 (24%), Positives = 49/109 (44%)

Query: 570 MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
           M+R    P   TY  LI+     G+  + L     +   G   +V+ YNT++   C+ GR
Sbjct: 1   MIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGR 60

Query: 630 IDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678
           ID    +++ M    +QP+  + + + +G    G    A E L+ +  +
Sbjct: 61  IDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYK 109


>gi|224126843|ref|XP_002319940.1| predicted protein [Populus trichocarpa]
 gi|222858316|gb|EEE95863.1| predicted protein [Populus trichocarpa]
          Length = 555

 Score = 89.7 bits (221), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 105/471 (22%), Positives = 180/471 (38%), Gaps = 35/471 (7%)

Query: 194 VTYTELLKLAVWQKNLSAVHEIWEDY-IKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQH 252
           V + EL    V  K+   V  + +   +   S  + SL   +  F RL  +   +  L  
Sbjct: 92  VKFGELFSALVRMKHYKTVVSLSKQMEMAGISHDVLSLTILINCFCRLCHVDYGFSVLGK 151

Query: 253 MVALAMMGKLYINRT------SEGRL-RSSRL-DIPIPLNALPVMKVLRWSFSDVIHACG 304
           ++ L +   +    T       EG++ R+  L D+ +     P +     S+S +I    
Sbjct: 152 IIKLGLEPNVITFSTLINGFCIEGKIGRAIELFDVMVARGYKPNVH----SYSIIIKGLC 207

Query: 305 RTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDS 364
           R   +    +L+  M+ +G +P    Y+  +  +  DR +   + +   M+   + P   
Sbjct: 208 RVGKTTEVIKLLEHMKVVGCEPDVVIYNTIVDRLCKDRLVNEAVHIFCKMKGTGILPTVV 267

Query: 365 TIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDK----PERAIKIFAK 420
           T  +L            A  LL+++          AF    D M K     E  + +   
Sbjct: 268 TYTSLIHGLRNLGRWKEAFGLLNEMKGGNIMPDLVAFSVLIDIMCKEGEVSEARVILKTM 327

Query: 421 MRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISM 480
               + PD+ TY  L + +       E   +F  + S  R+  +              S 
Sbjct: 328 TEMGVEPDVATYNTLMNGYCLRMEVVEARKVFEVMISKGRMPDV-------------FSF 374

Query: 481 KNLLKALGAEGMIRELIQYFCDSKTPLG----TPTYNTVLHSLVEAQESHRAMEIFKQMK 536
             L+        I E  Q F D  T  G    T +YNT++  L +A+    A E+FK M 
Sbjct: 375 SILVNGYCKAKRIDEAKQLF-DEMTHRGLIPDTVSYNTLISGLCQARRPLEAEELFKDMH 433

Query: 537 TCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFD 596
           + G PPN  TY+I++DC S       A  L   M   G  P  +TY  +I  +  YG F 
Sbjct: 434 SNGYPPNLVTYSILLDCLSKQGYLDQAMGLFRAMENSGLKPDLVTYNIMIDGMCKYGKFK 493

Query: 597 EALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
           +A  L   +S++G+  +  +    +   C+ G +D       QM ++   P
Sbjct: 494 DARELFAELSVKGLQPNNWVCTPTIDGVCKGGLLDEAHKAFRQMEKDDCSP 544



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 86/186 (46%), Gaps = 5/186 (2%)

Query: 478 ISMKNLLKALGAEGMIRELIQYFCDSKTPLG----TPTYNTVLHSLVEAQESHRAMEIFK 533
           I+   L+     EG I   I+ F D     G      +Y+ ++  L    ++   +++ +
Sbjct: 162 ITFSTLINGFCIEGKIGRAIELF-DVMVARGYKPNVHSYSIIIKGLCRVGKTTEVIKLLE 220

Query: 534 QMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYG 593
            MK  G  P+   YN ++D     R    A  +   M   G  P  +TYT+LI  L + G
Sbjct: 221 HMKVVGCEPDVVIYNTIVDRLCKDRLVNEAVHIFCKMKGTGILPTVVTYTSLIHGLRNLG 280

Query: 594 DFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCH 653
            + EA  LL+ +    I  D++ ++ ++   C++G +     I++ M +  V+PD +T +
Sbjct: 281 RWKEAFGLLNEMKGGNIMPDLVAFSVLIDIMCKEGEVSEARVILKTMTEMGVEPDVATYN 340

Query: 654 FVFSGY 659
            + +GY
Sbjct: 341 TLMNGY 346



 Score = 66.2 bits (160), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 108/244 (44%), Gaps = 20/244 (8%)

Query: 421 MRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISM 480
           ++  L P++ T+  L      +N    EG +       + I   ++ +AR    + H S 
Sbjct: 153 IKLGLEPNVITFSTL------INGFCIEGKI------GRAIELFDVMVARGYKPNVH-SY 199

Query: 481 KNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKT 537
             ++K L   G   E+I+     K     P    YNT++  L + +  + A+ IF +MK 
Sbjct: 200 SIIIKGLCRVGKTTEVIKLLEHMKVVGCEPDVVIYNTIVDRLCKDRLVNEAVHIFCKMKG 259

Query: 538 CGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDE 597
            GI P   TY  +I     +  +K A  L++ M      P  + ++ LI I+   G+  E
Sbjct: 260 TGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMKGGNIMPDLVAFSVLIDIMCKEGEVSE 319

Query: 598 ALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEF--IIEQMHQNKVQPDPSTCHFV 655
           A  +L  ++  G+  DV  YNT++   C   R++V+E   + E M      PD  +   +
Sbjct: 320 ARVILKTMTEMGVEPDVATYNTLMNGYCL--RMEVVEARKVFEVMISKGRMPDVFSFSIL 377

Query: 656 FSGY 659
            +GY
Sbjct: 378 VNGY 381



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 75/371 (20%), Positives = 144/371 (38%), Gaps = 22/371 (5%)

Query: 318 QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKAL 377
           ++  LGL+P+  T+   I     +  +   +E+  +M     KP   + + +     +  
Sbjct: 151 KIIKLGLEPNVITFSTLINGFCIEGKIGRAIELFDVMVARGYKPNVHSYSIIIKGLCRVG 210

Query: 378 ELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPE---RAIKIFAKMR-QKLRPDIRTYE 433
           +      LL+ +           +    D + K      A+ IF KM+   + P + TY 
Sbjct: 211 KTTEVIKLLEHMKVVGCEPDVVIYNTIVDRLCKDRLVNEAVHIFCKMKGTGILPTVVTYT 270

Query: 434 LLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMI 493
            L     N+    E   + ++             M   NI    ++   L+  +  EG +
Sbjct: 271 SLIHGLRNLGRWKEAFGLLNE-------------MKGGNIMPDLVAFSVLIDIMCKEGEV 317

Query: 494 RELIQYFCDSKTPLGT----PTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNI 549
            E  +    + T +G      TYNT+++      E   A ++F+ M + G  P+  +++I
Sbjct: 318 SE-ARVILKTMTEMGVEPDVATYNTLMNGYCLRMEVVEARKVFEVMISKGRMPDVFSFSI 376

Query: 550 MIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEG 609
           +++     +    A  L   M   G  P T++Y  LI  L       EA  L   +   G
Sbjct: 377 LVNGYCKAKRIDEAKQLFDEMTHRGLIPDTVSYNTLISGLCQARRPLEAEELFKDMHSNG 436

Query: 610 IPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAM 669
            P +++ Y+ +L    ++G +D    +   M  + ++PD  T + +  G    G    A 
Sbjct: 437 YPPNLVTYSILLDCLSKQGYLDQAMGLFRAMENSGLKPDLVTYNIMIDGMCKYGKFKDAR 496

Query: 670 EALQVLSMRML 680
           E    LS++ L
Sbjct: 497 ELFAELSVKGL 507



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 75/393 (19%), Positives = 144/393 (36%), Gaps = 57/393 (14%)

Query: 326 PSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVEC-SKALELDLAEA 384
           PS   +     A+V  +  +  + + K M+   +   D    T+ + C  +   +D   +
Sbjct: 89  PSIVKFGELFSALVRMKHYKTVVSLSKQMEMAGIS-HDVLSLTILINCFCRLCHVDYGFS 147

Query: 385 LLDQISRCT---NPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFG 440
           +L +I +     N   FS  +       K  RAI++F  M  +  +P++ +Y ++     
Sbjct: 148 VLGKIIKLGLEPNVITFSTLINGFCIEGKIGRAIELFDVMVARGYKPNVHSYSIIIKGLC 207

Query: 441 NVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYF 500
            V    E   +   +    ++   E D+   N          ++  L  + ++ E +  F
Sbjct: 208 RVGKTTEVIKLLEHM----KVVGCEPDVVIYN---------TIVDRLCKDRLVNEAVHIF 254

Query: 501 CDSKTPLGTPT---YNTVLHSL-----------------------------------VEA 522
           C  K     PT   Y +++H L                                    + 
Sbjct: 255 CKMKGTGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMKGGNIMPDLVAFSVLIDIMCKE 314

Query: 523 QESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTY 582
            E   A  I K M   G+ P+ ATYN +++   +      A  +  +M+  G  P   ++
Sbjct: 315 GEVSEARVILKTMTEMGVEPDVATYNTLMNGYCLRMEVVEARKVFEVMISKGRMPDVFSF 374

Query: 583 TALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642
           + L+         DEA  L D ++  G+  D + YNT++   C+  R    E + + MH 
Sbjct: 375 SILVNGYCKAKRIDEAKQLFDEMTHRGLIPDTVSYNTLISGLCQARRPLEAEELFKDMHS 434

Query: 643 NKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
           N   P+  T   +       G+ + AM   + +
Sbjct: 435 NGYPPNLVTYSILLDCLSKQGYLDQAMGLFRAM 467


>gi|225456753|ref|XP_002268934.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580 [Vitis vinifera]
 gi|297733985|emb|CBI15232.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score = 89.7 bits (221), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 124/580 (21%), Positives = 229/580 (39%), Gaps = 36/580 (6%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y  +M  L +  Y ++A   +Y      GI P +  +   + +  +      A   L+ M
Sbjct: 114 YNAIMNILVEYRYFDQAHK-VYMRMRDKGIVPDVYTFTIRMKSFCRTSRPHAARRLLNNM 172

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK-HYSLSIFSLRKFVWSFTRLRDL 243
            S+    + V Y  ++     + +    HE++E+ +       I +  K + +  R   +
Sbjct: 173 PSQGCESSAVAYCTVIGGFYEENHRVEAHELFEEMLGLGICPDIMAFNKLIHTLCRKGHV 232

Query: 244 KSAYETLQHMVALAMMGKLY-INRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIH- 301
           + +   L  ++   +   L+ +N   +G  + + L+  I L    +  V R    DVI  
Sbjct: 233 QESERLLNKVLKRGVSPNLFTVNIFIQGFCQRAMLNEAIRL----LDGVGRGLTPDVITY 288

Query: 302 ---ACGRTQNSGL--AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQ 356
               CG  +N  +  AE  + +M + G +P   TY+  I        ++N  ++L+    
Sbjct: 289 NTLICGLCKNFKVVEAEHYLRKMVNEGYEPDGFTYNSIIDGYCKLGMMQNADQILRDGAF 348

Query: 357 NNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPE---- 412
               P +ST  +L     +  ++D A  + ++       K     L  C+T+ K      
Sbjct: 349 KGFVPDESTYCSLINGLCQDGDIDRAINVFNEAME----KGLKPNLVLCNTLVKGLSQQG 404

Query: 413 ---RAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
              +A+K+  +M +    PDI TY L+ +    +    +  N+         I+AI    
Sbjct: 405 LILQALKLMNEMSENGCSPDIWTYNLVINGLCKIGCVSDADNLV--------IDAIAKGH 456

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRA 528
             +    + + +    K L  +  I E++    +        TYN++L+ L +A +    
Sbjct: 457 LPDVFTFNTL-IDGYCKKLKLDNAI-EIVDRMWNHGVSPDVITYNSILNGLCKAGKYEDV 514

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
           M  FK M   G  PN  TYNI+ +     R  + A  L+  M   G  P  + +  L+K 
Sbjct: 515 MGTFKLMMEKGCVPNIITYNILTESFCKARKVEEALNLIEEMQNKGLTPDVVNFGTLMKG 574

Query: 589 LLDYGDFDEALNLLDLVSLE-GIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
             D GD D A  L   V  +    H +  YN ++     K  +++ E +  +M +N   P
Sbjct: 575 FCDNGDLDGAYQLFKRVDEQYKFSHTIATYNIMINAFAGKLNMNMAEKLFNKMCENGFSP 634

Query: 648 DPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTL 687
           D  T   +  G+   G  NS    L V   + L   ++T 
Sbjct: 635 DSYTYRVMIDGFCKTGNINSGYSFLLVKIEKGLIPSLTTF 674



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 118/537 (21%), Positives = 222/537 (41%), Gaps = 48/537 (8%)

Query: 128 MMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFL-GACAKLHSMVHANLCLDLMDS 186
           ++  LC+ G+++E+  L+  + +R G+ P L   N F+ G C +       N  + L+D 
Sbjct: 222 LIHTLCRKGHVQESERLLNKVLKR-GVSPNLFTVNIFIQGFCQR----AMLNEAIRLLDG 276

Query: 187 --RMVGKNEVTYTELL-KLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDL 243
             R +  + +TY  L+  L    K + A H + +   + Y    F+    +  + +L  +
Sbjct: 277 VGRGLTPDVITYNTLICGLCKNFKVVEAEHYLRKMVNEGYEPDGFTYNSIIDGYCKLGMM 336

Query: 244 KSAYETLQHMVALAMMGKLYINRTS----EGRLRSSRLDIPIPLNALPVMKVLRWSFSDV 299
           ++A + L+     A  G +    T      G  +   +D  I +    + K L+ +    
Sbjct: 337 QNADQILRDG---AFKGFVPDESTYCSLINGLCQDGDIDRAINVFNEAMEKGLKPNLVLC 393

Query: 300 IHACGRTQNSGL---AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGME-VLKIMQ 355
                     GL   A +LM +M   G  P   TY+  I  +     + +    V+  + 
Sbjct: 394 NTLVKGLSQQGLILQALKLMNEMSENGCSPDIWTYNLVINGLCKIGCVSDADNLVIDAIA 453

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQI-SRCTNPK--PFSAFLAACDTMDKPE 412
           + +L P   T  TL     K L+LD A  ++D++ +   +P    +++ L       K E
Sbjct: 454 KGHL-PDVFTFNTLIDGYCKKLKLDNAIEIVDRMWNHGVSPDVITYNSILNGLCKAGKYE 512

Query: 413 RAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471
             +  F  M +K   P+I TY +L   F              +V+ A  +N IE +M   
Sbjct: 513 DVMGTFKLMMEKGCVPNIITYNILTESFCKA----------RKVEEA--LNLIE-EMQNK 559

Query: 472 NIQHSHISMKNLLKALGAEGMIRELIQYF--CDSKTPLG--TPTYNTVLHSLVEAQESHR 527
            +    ++   L+K     G +    Q F   D +        TYN ++++       + 
Sbjct: 560 GLTPDVVNFGTLMKGFCDNGDLDGAYQLFKRVDEQYKFSHTIATYNIMINAFAGKLNMNM 619

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A ++F +M   G  P++ TY +MID         S  + + + +  G  P   T+  ++ 
Sbjct: 620 AEKLFNKMCENGFSPDSYTYRVMIDGFCKTGNINSGYSFLLVKIEKGLIPSLTTFGRVLN 679

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTIL---KKACEKGRIDVIEFIIEQMH 641
            L       EA+ ++ L+  +GI  +V+  NTI    KK     +I V+E ++++ H
Sbjct: 680 CLCLKRRVHEAVGIIHLMVHKGIVPEVV--NTIFEADKKEVAAPKI-VVENLMKKGH 733


>gi|449467169|ref|XP_004151297.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g21222-like [Cucumis sativus]
 gi|449518833|ref|XP_004166440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g21222-like [Cucumis sativus]
          Length = 609

 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 81/420 (19%), Positives = 177/420 (42%), Gaps = 21/420 (5%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ ++ A  R +       L+ +M+  G++P S   +  I A      ++  ME+ + M
Sbjct: 94  TYTALVAALTRQKRFKAISGLLSEMEETGIKPDSILLNAIINAFSESGNVKEAMEIFQKM 153

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAA-CDTMD 409
           +++  KP  ST  TL        + + +  LL+ ++R TN KP    ++  + A C    
Sbjct: 154 EESGCKPTTSTFNTLIKGYGIIRKPEESMKLLELMTRTTNLKPNNRTYNILVGALCKKKS 213

Query: 410 KPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
             E    +   +   ++PD+ TY  L                ++Q     +  +I +DM 
Sbjct: 214 IKEAWNVVHQMLASGVQPDVVTYNTL-------------ARAYAQDGETNKAESIIVDML 260

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPT---YNTVLHSLVEAQESH 526
              +  +  +   ++     +G + E ++     +     P    +N+++   ++  +S 
Sbjct: 261 NKKVNPNERTCGIIVGGYCEQGNLAEALRVVYRMRDLGIHPNLVIFNSLIKGFLDIGDSD 320

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
              +    M+  G+ P+  T++ +++  S          +   M++ G  P    ++ L 
Sbjct: 321 GVDKALTMMEESGVKPDVITFSTIMNGWSSAGRMDKCQEIFDDMLKSGIEPDIHVFSILA 380

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
           K  +  G+  +A +LL+ +S  G+  +V+++ TI+   C  G+++    + E M    V 
Sbjct: 381 KGFVRAGEPVKAESLLNFMSKYGVRPNVVIFTTIISGWCTAGKMEKAWKVFEHMCDMDVS 440

Query: 647 PDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDFEDLILAEDSEAE 706
           P+  T   +  GY        A E LQ++    +  E STL+     +  + +  D++AE
Sbjct: 441 PNLKTFETLIWGYGEAKQPWRAEEILQMMEEMNVVPENSTLKLVSEAWRSIGMVNDAKAE 500



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 76/345 (22%), Positives = 140/345 (40%), Gaps = 48/345 (13%)

Query: 323 GLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLA 382
           G +P++ TY   + A+   +  +    +L  M++  +KP DS                L 
Sbjct: 87  GHRPTTVTYTALVAALTRQKRFKAISGLLSEMEETGIKP-DSI---------------LL 130

Query: 383 EALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGN 441
            A+++  S   N K                 A++IF KM +   +P   T+  L   +G 
Sbjct: 131 NAIINAFSESGNVK----------------EAMEIFQKMEESGCKPTTSTFNTLIKGYGI 174

Query: 442 VNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRE---LIQ 498
           +  P E             +  +E+     N++ ++ +   L+ AL  +  I+E   ++ 
Sbjct: 175 IRKPEES------------MKLLELMTRTTNLKPNNRTYNILVGALCKKKSIKEAWNVVH 222

Query: 499 YFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIR 558
               S       TYNT+  +  +  E+++A  I   M    + PN  T  I++       
Sbjct: 223 QMLASGVQPDVVTYNTLARAYAQDGETNKAESIIVDMLNKKVNPNERTCGIIVGGYCEQG 282

Query: 559 CFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYN 618
               A  +V  M   G +P  + + +LIK  LD GD D     L ++   G+  DV+ ++
Sbjct: 283 NLAEALRVVYRMRDLGIHPNLVIFNSLIKGFLDIGDSDGVDKALTMMEESGVKPDVITFS 342

Query: 619 TILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
           TI+      GR+D  + I + M ++ ++PD      +  G+V  G
Sbjct: 343 TIMNGWSSAGRMDKCQEIFDDMLKSGIEPDIHVFSILAKGFVRAG 387



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 3/117 (2%)

Query: 561 KSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTI 620
           + A  + + +V  G  P T+TYTAL+  L     F     LL  +   GI  D +L N I
Sbjct: 74  QEAQFIFNSLVEQGHRPTTVTYTALVAALTRQKRFKAISGLLSEMEETGIKPDSILLNAI 133

Query: 621 LKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSM 677
           +    E G +     I ++M ++  +P  ST + +  GY   G      E++++L +
Sbjct: 134 INAFSESGNVKEAMEIFQKMEESGCKPTTSTFNTLIKGY---GIIRKPEESMKLLEL 187



 Score = 48.1 bits (113), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 45/206 (21%), Positives = 73/206 (35%), Gaps = 37/206 (17%)

Query: 500 FCDSKTPLGTPTYNT-VLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIR 558
            C      GT    T +++ LVE  +   A  IF  +   G  P   TY  ++   +  +
Sbjct: 47  LCLGNNSCGTVRSRTKLMNILVERGKPQEAQFIFNSLVEQGHRPTTVTYTALVAALTRQK 106

Query: 559 CFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYN 618
            FK+ S L+S M   G  P ++   A+I    + G+  EA+ +   +   G       +N
Sbjct: 107 RFKAISGLLSEMEETGIKPDSILLNAIINAFSESGNVKEAMEIFQKMEESGCKPTTSTFN 166

Query: 619 TILK------------------------------------KACEKGRIDVIEFIIEQMHQ 642
           T++K                                      C+K  I     ++ QM  
Sbjct: 167 TLIKGYGIIRKPEESMKLLELMTRTTNLKPNNRTYNILVGALCKKKSIKEAWNVVHQMLA 226

Query: 643 NKVQPDPSTCHFVFSGYVNCGFHNSA 668
           + VQPD  T + +   Y   G  N A
Sbjct: 227 SGVQPDVVTYNTLARAYAQDGETNKA 252



 Score = 40.4 bits (93), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 49/261 (18%), Positives = 106/261 (40%), Gaps = 37/261 (14%)

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
           M  K++  N +   +++   C+ G L EA  ++Y + +  GI+P L ++NS +     + 
Sbjct: 259 MLNKKVNPNERTCGIIVGGYCEQGNLAEALRVVYRMRD-LGIHPNLVIFNSLIKGFLDIG 317

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK---HYSLSIFS 229
                +  L +M+   V  + +T++ ++        +    EI++D +K      + +FS
Sbjct: 318 DSDGVDKALTMMEESGVKPDVITFSTIMNGWSSAGRMDKCQEIFDDMLKSGIEPDIHVFS 377

Query: 230 LRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVM 289
           +      F R      A E ++    L  M K  +           R ++ I        
Sbjct: 378 I--LAKGFVR------AGEPVKAESLLNFMSKYGV-----------RPNVVI-------- 410

Query: 290 KVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGME 349
                 F+ +I           A ++   M  + + P+  T++  I      +      E
Sbjct: 411 ------FTTIISGWCTAGKMEKAWKVFEHMCDMDVSPNLKTFETLIWGYGEAKQPWRAEE 464

Query: 350 VLKIMQQNNLKPQDSTIATLS 370
           +L++M++ N+ P++ST+  +S
Sbjct: 465 ILQMMEEMNVVPENSTLKLVS 485


>gi|297739653|emb|CBI29835.3| unnamed protein product [Vitis vinifera]
          Length = 852

 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 84/377 (22%), Positives = 161/377 (42%), Gaps = 30/377 (7%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ +I+A GR      A  +M  M    + PS  TY+  I A  S    +  + V K M
Sbjct: 199 TYNALINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLINACGSSGNWKEALNVCKKM 258

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLD--QISRCTNPKP----FSAFLAACDTM 408
            +N + P    + T ++  S     +    +L   ++ + TN +P     +  +     +
Sbjct: 259 TENGVGPD---LVTHNIVLSAYKRGNQYSKVLSYFELMKGTNIRPDTTTLNIVIYCLVKL 315

Query: 409 DKPERAIKIFAKMRQKLR---PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKR-INAI 464
            +  +AI IF  M++K     PD+ T+  +  L+          ++  Q+++ +   N +
Sbjct: 316 GQNGKAIDIFNSMKEKRSECYPDVVTFTTIIHLY----------SVCGQIENCQTAFNTM 365

Query: 465 EMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVE 521
             +  + NI    +S   L+ A  + GM +E    F + K     P   +Y ++L++  +
Sbjct: 366 LAEGLKPNI----VSYNALIGAYASHGMDKEAFSVFNEIKKNGFHPDVVSYTSLLNAYGK 421

Query: 522 AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMT 581
           + +  +AM++F+ M+     PN  +YN +ID          A  ++  M R+G  P  ++
Sbjct: 422 SGKPEKAMKVFELMRRNHCKPNLVSYNALIDAYGSKGLLTEAVEILHEMERNGVQPNIVS 481

Query: 582 YTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMH 641
              L+      G   +  ++L    L GI  +   YN+ +      G  D    +   M 
Sbjct: 482 ICTLLAACGRCGQKVKIKSVLSAAELRGIKLNTTAYNSAIGSYLSVGEYDKALSLYRAMR 541

Query: 642 QNKVQPDPSTCHFVFSG 658
             KV+PDP T + + SG
Sbjct: 542 TKKVKPDPVTYNVLISG 558



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 124/569 (21%), Positives = 219/569 (38%), Gaps = 94/569 (16%)

Query: 104 LFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNS 163
            F M+ WR   + E       Y  ++ A  + G    A N++  +  R  I P    YN+
Sbjct: 185 FFEMQKWRCKPDAET------YNALINAHGRAGQWRWAMNIMDDM-LRAAIPPSRSTYNN 237

Query: 164 FLGACAKLHSMVHA-NLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH 222
            + AC    +   A N+C  + ++  VG + VT+  +L         S V          
Sbjct: 238 LINACGSSGNWKEALNVCKKMTENG-VGPDLVTHNIVLSAYKRGNQYSKV---------- 286

Query: 223 YSLSIFSLRKFVWSFTRLR-DLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPI 281
             LS F L K     T +R D  +    +  +V L   GK      S    RS      +
Sbjct: 287 --LSYFELMK----GTNIRPDTTTLNIVIYCLVKLGQNGKAIDIFNSMKEKRSECYPDVV 340

Query: 282 PLNALPVMKVLRWSFSDVIH---ACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAI 338
                        +F+ +IH    CG+ +N   A   ML   + GL+P+  +Y+  I A 
Sbjct: 341 -------------TFTTIIHLYSVCGQIENCQTAFNTML---AEGLKPNIVSYNALIGAY 384

Query: 339 VSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPF 398
            S    +    V   +++N   P                         D +S       +
Sbjct: 385 ASHGMDKEAFSVFNEIKKNGFHP-------------------------DVVS-------Y 412

Query: 399 SAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDS 457
           ++ L A     KPE+A+K+F  MR+   +P++ +Y  L   +G+      +G +   V+ 
Sbjct: 413 TSLLNAYGKSGKPEKAMKVFELMRRNHCKPNLVSYNALIDAYGS------KGLLTEAVE- 465

Query: 458 AKRINAIEMDMARNNIQHSHISMKNLLKALGAEGM---IRELIQYFCDSKTPLGTPTYNT 514
                 I  +M RN +Q + +S+  LL A G  G    I+ ++         L T  YN+
Sbjct: 466 ------ILHEMERNGVQPNIVSICTLLAACGRCGQKVKIKSVLSAAELRGIKLNTTAYNS 519

Query: 515 VLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDG 574
            + S +   E  +A+ +++ M+T  + P+  TYN++I  C  +  +  A   +  M+   
Sbjct: 520 AIGSYLSVGEYDKALSLYRAMRTKKVKPDPVTYNVLISGCCKMSKYGEALGFLDEMMDLK 579

Query: 575 FYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIE 634
                  Y+++I      G   EA ++   + + G   DV+ Y  ++         +   
Sbjct: 580 IPLSKEVYSSVICAYSKQGQVTEAESMFTKMKMVGCRPDVITYTAMIHAYDVAENWEKAS 639

Query: 635 FIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
            +  +M  + VQPD   C  +   +   G
Sbjct: 640 ALFLEMETDDVQPDSIACSSLMRAFNKGG 668



 Score = 65.9 bits (159), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 68/325 (20%), Positives = 135/325 (41%), Gaps = 53/325 (16%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           S++ +++A G++     A ++   M+    +P+  +Y+  I A  S   L   +E+L  M
Sbjct: 411 SYTSLLNAYGKSGKPEKAMKVFELMRRNHCKPNLVSYNALIDAYGSKGLLTEAVEILHEM 470

Query: 355 QQNNLKPQDSTIATLSVECSK-----ALELDLAEALLDQISRCTNPKPFSAFLAACDTMD 409
           ++N ++P   +I TL   C +      ++  L+ A L  I    N   +++ + +  ++ 
Sbjct: 471 ERNGVQPNIVSICTLLAACGRCGQKVKIKSVLSAAELRGIK--LNTTAYNSAIGSYLSVG 528

Query: 410 KPERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
           + ++A+ ++  MR +K++PD  TY +L S                               
Sbjct: 529 EYDKALSLYRAMRTKKVKPDPVTYNVLIS------------------------------- 557

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRA 528
                      M    +ALG        +    D K PL    Y++V+ +  +  +   A
Sbjct: 558 -------GCCKMSKYGEALG-------FLDEMMDLKIPLSKEVYSSVICAYSKQGQVTEA 603

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
             +F +MK  G  P+  TY  MI    +   ++ ASAL   M  D   P ++  ++L++ 
Sbjct: 604 ESMFTKMKMVGCRPDVITYTAMIHAYDVAENWEKASALFLEMETDDVQPDSIACSSLMRA 663

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHD 613
               G   + L L + +  + IP +
Sbjct: 664 FNKGGQPAKVLVLAEFMREKKIPFN 688



 Score = 57.0 bits (136), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/221 (21%), Positives = 95/221 (42%), Gaps = 17/221 (7%)

Query: 483 LLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESH----RAMEIFKQMKTC 538
           L++ +   G +   +Q F   K        N + + ++     H    +A  +F +M+  
Sbjct: 132 LIREITQIGSLEHSVQVFRWMKNQKNYCARNDIYNMMIRLHARHNIVDQARGLFFEMQKW 191

Query: 539 GIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEA 598
              P+A TYN +I+       ++ A  ++  M+R    P   TY  LI      G++ EA
Sbjct: 192 RCKPDAETYNALINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLINACGSSGNWKEA 251

Query: 599 LNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
           LN+   ++  G+  D++ +N +L       +   +    E M    ++PD +T + V   
Sbjct: 252 LNVCKKMTENGVGPDLVTHNIVLSAYKRGNQYSKVLSYFELMKGTNIRPDTTTLNIVIYC 311

Query: 659 YVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSD-FEDLI 698
            V  G +  A++              ++++EKRS+ + D++
Sbjct: 312 LVKLGQNGKAIDIF------------NSMKEKRSECYPDVV 340



 Score = 56.2 bits (134), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 67/366 (18%), Positives = 151/366 (41%), Gaps = 23/366 (6%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           S   ++ ACGR       + ++   +  G++ ++  Y+  I + +S       + + + M
Sbjct: 481 SICTLLAACGRCGQKVKIKSVLSAAELRGIKLNTTAYNSAIGSYLSVGEYDKALSLYRAM 540

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNP---KPFSAFLAACDTMDKP 411
           +   +KP   T   L   C K  +   A   LD++     P   + +S+ + A     + 
Sbjct: 541 RTKKVKPDPVTYNVLISGCCKMSKYGEALGFLDEMMDLKIPLSKEVYSSVICAYSKQGQV 600

Query: 412 ERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
             A  +F KM+    RPD+ TY  +              + +   ++ ++ +A+ ++M  
Sbjct: 601 TEAESMFTKMKMVGCRPDVITYTAMI-------------HAYDVAENWEKASALFLEMET 647

Query: 471 NNIQHSHISMKNLLKAL---GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHR 527
           +++Q   I+  +L++A    G    +  L ++  + K P    ++  ++ +    +E   
Sbjct: 648 DDVQPDSIACSSLMRAFNKGGQPAKVLVLAEFMREKKIPFNNSSFFEMVSACSLLREWRE 707

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
            + + K M+      +    N ++         ++   L   +V  G      TY+ L+K
Sbjct: 708 IIGLIKLMEPSISVVSIGLLNQLLHFLGKSGKIETMMKLFYKIVASGAEINFYTYSILLK 767

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID---VIEFIIEQMHQNK 644
            LL  G++ + + +L  +   G+   V +Y +I   A  +   +   VI+  IE + +N 
Sbjct: 768 NLLAAGNWRKYIEVLQWMEEAGLQPSVGMYRSISSFAQNRSGAEYAAVIQERIESLKRNS 827

Query: 645 VQPDPS 650
              +P+
Sbjct: 828 RNQNPT 833


>gi|224097576|ref|XP_002310993.1| predicted protein [Populus trichocarpa]
 gi|222850813|gb|EEE88360.1| predicted protein [Populus trichocarpa]
          Length = 877

 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 83/437 (18%), Positives = 166/437 (37%), Gaps = 41/437 (9%)

Query: 288 VMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNG 347
           + K  R  F  ++    R  +   A Q    M+  G+ PSSH Y   I A    R +   
Sbjct: 297 IKKPARREFGLMVGYYARRGDMHRARQTFESMRVRGIYPSSHVYTSLIHAYAVGRDMEEA 356

Query: 348 MEVLKIMQQNNLKPQDSTIATLSV---------ECSKALELDLAEALLDQISRCTNPKP- 397
           +  ++ M++  +   + ++ T S+            ++  +D AE+L+ ++       P 
Sbjct: 357 LSCVRKMKEEGV---EMSLVTYSIVVGGFAKIGNADQSCNMDRAESLVREMEEEGIDAPI 413

Query: 398 --FSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLF---GNVNAPYEEGNM 451
             +   +     +   E+ + +F ++++    P + +Y  L +++   G V+   E   M
Sbjct: 414 DIYHTMMNGYTMIGNEEKCLIVFKRLKECGFAPSVISYGCLINMYTKMGKVSKALEVSKM 473

Query: 452 FSQVDSAKRINAIEM-------------------DMARNNIQHSHISMKNLLKALGAEGM 492
                    +    M                   D+ ++ ++   +   N++KA    G 
Sbjct: 474 MESAGIKHNMKTYSMLINGFLKLKDWTNAFTVFEDVIKDGLKPDVVLYNNIIKAFCGMGN 533

Query: 493 IRELIQYFCDSKTPLGTPTYNT---VLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNI 549
           +   I    + +     PT  T   ++H    A E  RA+EIF  M+  G  P   T+N 
Sbjct: 534 MDRAIHMVKEMQKKRHRPTSRTFMPIIHGFARAGEMRRALEIFDMMRRSGCIPTVHTFNA 593

Query: 550 MIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEG 609
           ++      R  + A  ++  M   G  P   TYT ++      GD  +A      +  EG
Sbjct: 594 LVLGLVEKRQMEKAVEILDEMALAGVSPDEHTYTTIMNGYAALGDTGKAFEYFTKLRNEG 653

Query: 610 IPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAM 669
           +  DV  Y  +LK  C+ GR+     +  +M    +  +    + +  G+   G    A 
Sbjct: 654 LELDVFTYEALLKACCKSGRMQSALAVTREMSAQNIPRNTFVYNILIDGWARRGDVWEAA 713

Query: 670 EALQVLSMRMLCEEVST 686
           + +Q +    +  ++ T
Sbjct: 714 DLMQQMKQEGVQPDIHT 730



 Score = 69.3 bits (168), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 102/500 (20%), Positives = 201/500 (40%), Gaps = 57/500 (11%)

Query: 153 GIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYT--------------- 197
           GIYP   VY S + A A    M  A  C+  M    V  + VTY+               
Sbjct: 332 GIYPSSHVYTSLIHAYAVGRDMEEALSCVRKMKEEGVEMSLVTYSIVVGGFAKIGNADQS 391

Query: 198 ------ELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQ 251
                 E L   + ++ + A  +I+   +  Y++ I +  K +  F RL++   A   + 
Sbjct: 392 CNMDRAESLVREMEEEGIDAPIDIYHTMMNGYTM-IGNEEKCLIVFKRLKECGFAPSVIS 450

Query: 252 HMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGL 311
           +   + M  K+       G++ S  L++   + +  +   ++ ++S +I+   + ++   
Sbjct: 451 YGCLINMYTKM-------GKV-SKALEVSKMMESAGIKHNMK-TYSMLINGFLKLKDWTN 501

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A  +   +   GL+P    Y+  I+A      +   + ++K MQ+   +P   T   +  
Sbjct: 502 AFTVFEDVIKDGLKPDVVLYNNIIKAFCGMGNMDRAIHMVKEMQKKRHRPTSRTFMPIIH 561

Query: 372 ECSKALELDLAEALLDQISRC---TNPKPFSAFLAACDTMDKPERAIKIFAKMR-QKLRP 427
             ++A E+  A  + D + R         F+A +       + E+A++I  +M    + P
Sbjct: 562 GFARAGEMRRALEIFDMMRRSGCIPTVHTFNALVLGLVEKRQMEKAVEILDEMALAGVSP 621

Query: 428 DIRTYELL---FSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLL 484
           D  TY  +   ++  G+    +E    F+++    R   +E+D+          + + LL
Sbjct: 622 DEHTYTTIMNGYAALGDTGKAFE---YFTKL----RNEGLELDV---------FTYEALL 665

Query: 485 KALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIP 541
           KA    G ++    + +       P  T  YN ++       +   A ++ +QMK  G+ 
Sbjct: 666 KACCKSGRMQSALAVTREMSAQNIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQ 725

Query: 542 PNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNL 601
           P+  TY   I+ C        A+  +  M   G  P   TYT LI         ++AL  
Sbjct: 726 PDIHTYTSFINACCKAGDMLRATKTIQEMEALGVKPNVKTYTTLIHGWACASLPEKALRC 785

Query: 602 LDLVSLEGIPHDVLLYNTIL 621
            + + L G+  D  +Y+ ++
Sbjct: 786 FEEMKLAGLKPDKAVYHCLM 805



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 73/368 (19%), Positives = 142/368 (38%), Gaps = 16/368 (4%)

Query: 318 QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKAL 377
           +++  G  PS  +Y   I        +   +EV K+M+   +K    T + L     K  
Sbjct: 438 RLKECGFAPSVISYGCLINMYTKMGKVSKALEVSKMMESAGIKHNMKTYSMLINGFLKLK 497

Query: 378 ELDLAEALLDQISRCTNPKP----FSAFLAACDTMDKPERAIKIFAKMRQKL-RPDIRTY 432
           +   A  + + + +    KP    ++  + A   M   +RAI +  +M++K  RP  RT+
Sbjct: 498 DWTNAFTVFEDVIK-DGLKPDVVLYNNIIKAFCGMGNMDRAIHMVKEMQKKRHRPTSRTF 556

Query: 433 ELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGM 492
             +   F           +F   D  +R   I      N +    +  + + KA+     
Sbjct: 557 MPIIHGFARAGEMRRALEIF---DMMRRSGCIPTVHTFNALVLGLVEKRQMEKAV----- 608

Query: 493 IRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID 552
             E++     +       TY T+++      ++ +A E F +++  G+  +  TY  ++ 
Sbjct: 609 --EILDEMALAGVSPDEHTYTTIMNGYAALGDTGKAFEYFTKLRNEGLELDVFTYEALLK 666

Query: 553 CCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPH 612
            C      +SA A+   M        T  Y  LI      GD  EA +L+  +  EG+  
Sbjct: 667 ACCKSGRMQSALAVTREMSAQNIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQP 726

Query: 613 DVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEAL 672
           D+  Y + +   C+ G +      I++M    V+P+  T   +  G+        A+   
Sbjct: 727 DIHTYTSFINACCKAGDMLRATKTIQEMEALGVKPNVKTYTTLIHGWACASLPEKALRCF 786

Query: 673 QVLSMRML 680
           + + +  L
Sbjct: 787 EEMKLAGL 794



 Score = 45.4 bits (106), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 76/175 (43%), Gaps = 4/175 (2%)

Query: 26  ERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSL 85
           E+R +   +E+   +    G++ +  +  T M    AL  G+  +A      L +    L
Sbjct: 600 EKRQMEKAVEILDEMALA-GVSPDEHTYTTIMNGYAAL--GDTGKAFEYFTKLRNEGLEL 656

Query: 86  GADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLI 145
               +  +L  C +S      +   R M  + I  N   Y +++    + G + EA++L+
Sbjct: 657 DVFTYEALLKACCKSGRMQSALAVTREMSAQNIPRNTFVYNILIDGWARRGDVWEAADLM 716

Query: 146 YFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELL 200
             + +  G+ P +  Y SF+ AC K   M+ A   +  M++  V  N  TYT L+
Sbjct: 717 QQMKQE-GVQPDIHTYTSFINACCKAGDMLRATKTIQEMEALGVKPNVKTYTTLI 770


>gi|334183602|ref|NP_176522.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806282|sp|Q9C8T7.2|PP101_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63330
 gi|332195966|gb|AEE34087.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 559

 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 87/400 (21%), Positives = 180/400 (45%), Gaps = 20/400 (5%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           ++  V++   +  +  LA  L+ +M++  ++     ++  I ++   R + + + + K M
Sbjct: 152 TYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEM 211

Query: 355 QQNNLKPQDSTIATL-SVECSKALELDLAEALLDQISRCTNPK--PFSAFLAACDTMDKP 411
           +   ++P   T ++L S  CS     D ++ L D I +  NP    F+A + A     K 
Sbjct: 212 ETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKF 271

Query: 412 ERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
             A K+   M ++ + PDI TY  L + F           M  ++D AK++   E  +++
Sbjct: 272 VEAEKLHDDMIKRSIDPDIFTYNSLINGFC----------MHDRLDKAKQM--FEFMVSK 319

Query: 471 N---NIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHR 527
           +   ++   +  +K   K+   E    EL +          T TY T++  L    +   
Sbjct: 320 DCFPDLDTYNTLIKGFCKSKRVEDGT-ELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDN 378

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A ++FKQM + G+PP+  TY+I++D        + A  +   M +         YT +I+
Sbjct: 379 AQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIE 438

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
            +   G  D+  +L   +SL+G+  +V+ YNT++   C K  +     ++++M ++   P
Sbjct: 439 GMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLP 498

Query: 648 DPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTL 687
           D  T + +   ++  G   ++ E ++ +       + ST+
Sbjct: 499 DSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTI 538



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 101/476 (21%), Positives = 189/476 (39%), Gaps = 32/476 (6%)

Query: 226 SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLY-----IN---RTSEGRLRSSRL 277
           SIF   K + +  +++         + M  L +   LY     IN   R S+  L  + L
Sbjct: 9   SIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALL 68

Query: 278 DIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRA 337
              + L   P +  L    +   H  G+  +  +A  L+ QM  +G +P + T+   I  
Sbjct: 69  GKMMKLGYEPSIVTLSSLLNGYCH--GKRISDAVA--LVDQMVEMGYRPDTITFTTLIHG 124

Query: 338 IVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP 397
           +         + ++  M Q   +P   T   +     K  ++DLA  LL+++        
Sbjct: 125 LFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEAD 184

Query: 398 FSAFLAACDTMDK---PERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFS 453
              F    D++ K    + A+ +F +M  K +RP++ TY  L S   +     +   + S
Sbjct: 185 VVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLS 244

Query: 454 QVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP--- 510
                        DM    I  + ++   L+ A   EG   E  +   D       P   
Sbjct: 245 -------------DMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIF 291

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TYN++++         +A ++F+ M +    P+  TYN +I      +  +  + L   M
Sbjct: 292 TYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREM 351

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
              G    T+TYT LI+ L   GD D A  +   +  +G+P D++ Y+ +L   C  G++
Sbjct: 352 SHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKL 411

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           +    + + M +++++ D      +  G    G  +   +    LS++ +   V T
Sbjct: 412 EKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVT 467



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 81/356 (22%), Positives = 141/356 (39%), Gaps = 40/356 (11%)

Query: 276 RLDIPIPLNALPVMKVLRWS-----FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHT 330
           R DI +  N L  M+  +       F+ +I +  + ++   A  L  +M++ G++P+  T
Sbjct: 163 RGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVT 222

Query: 331 YDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-I 389
           Y   I  + S     +  ++L  M +  + P   T   L     K  +   AE L D  I
Sbjct: 223 YSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMI 282

Query: 390 SRCTNPKPFS--AFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPY 446
            R  +P  F+  + +      D+ ++A ++F  M  K   PD+ TY  L   F       
Sbjct: 283 KRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVE 342

Query: 447 EEGNMFSQV-------------------------DSAKRINAIEMDMARNNIQHSHISMK 481
           +   +F ++                         D+A+++      M  + +    ++  
Sbjct: 343 DGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFK---QMVSDGVPPDIMTYS 399

Query: 482 NLLKALGAEGMIR---ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTC 538
            LL  L   G +    E+  Y   S+  L    Y T++  + +A +     ++F  +   
Sbjct: 400 ILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLK 459

Query: 539 GIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGD 594
           G+ PN  TYN MI      R  + A AL+  M  DG  P + TY  LI+  L  GD
Sbjct: 460 GVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGD 515



 Score = 49.7 bits (117), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 84/460 (18%), Positives = 177/460 (38%), Gaps = 76/460 (16%)

Query: 93  ILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERY 152
           ++N   +  D          ME  +I  +   +  ++ +LCK  ++++A NL   + E  
Sbjct: 156 VVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEM-ETK 214

Query: 153 GIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAV 212
           GI P +  Y+S +           A+  L  M  + +  N VT+  L+   V +      
Sbjct: 215 GIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEA 274

Query: 213 HEIWEDYIKH-YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGR 271
            ++ +D IK      IF+    +  F     L  A +  + MV+                
Sbjct: 275 EKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSK--------------- 319

Query: 272 LRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTY 331
                       +  P +     +++ +I    +++      +L  +M   GL   + TY
Sbjct: 320 ------------DCFPDLD----TYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTY 363

Query: 332 DGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR 391
              I+ +  D    N  +V K M  + + P    I T S+             LLD +  
Sbjct: 364 TTLIQGLFHDGDCDNAQKVFKQMVSDGVPPD---IMTYSI-------------LLDGL-- 405

Query: 392 CTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGN 450
           C N K               E+A+++F  M++ +++ DI  Y  +           +  +
Sbjct: 406 CNNGKL--------------EKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWD 451

Query: 451 MFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP 510
           +F  +     +  ++ ++   N   S +  K LL+   A  +++++ +   D   P  + 
Sbjct: 452 LFCSL----SLKGVKPNVVTYNTMISGLCSKRLLQE--AYALLKKMKE---DGPLP-DSG 501

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIM 550
           TYNT++ + +   +   + E+ ++M++C    +A+T  ++
Sbjct: 502 TYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGLV 541


>gi|225436658|ref|XP_002276327.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Vitis vinifera]
          Length = 728

 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 121/561 (21%), Positives = 208/561 (37%), Gaps = 93/561 (16%)

Query: 127 LMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDS 186
           ++++ LC+ G + EA  LI  +G R  + P +  YN+ +    K   +  A   L  M++
Sbjct: 149 IVLKGLCRNGGVFEAMGLIREMG-RKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEA 207

Query: 187 RMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH-YSLSIFSLRKFVWSFTRLRDLKS 245
                N VT T L+        +    E+ E   K  +   +      +  F    +L  
Sbjct: 208 AGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDR 267

Query: 246 AYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGR 305
             E    M     +GK                   I  N +        ++S ++H   R
Sbjct: 268 GKELFDEM-----LGK------------------GISANVV--------TYSCLVHGLCR 296

Query: 306 TQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDST 365
                 A  ++  M   G+ P   TY G I  +  D    + M++L +M +   +P + T
Sbjct: 297 LGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVT 356

Query: 366 I-ATLSVECSKALELDLAEALLDQISRCTNPK--PFSAFLAACDTMDKPERAIKIFAKMR 422
               LS  C + L +D  + L   I +        ++  +       K + A+K+F  M 
Sbjct: 357 YNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMF 416

Query: 423 QK---LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHIS 479
                L P++ T+ +L      +    +EG +   V        I   M +     + ++
Sbjct: 417 DNENCLEPNVFTFNML------IGGLCKEGRLTKAVK-------IHRKMVKKGSCGNLVT 463

Query: 480 MKNLLKALGAEGMIRELIQY-----------------------------------FCDSK 504
              LL      G I+E ++                                    FC+ +
Sbjct: 464 YNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMR 523

Query: 505 TPLGTPT---YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFK 561
           T    P    YNT++ SL +     +A  +F++M      P+  ++N MID       F+
Sbjct: 524 THGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQ 583

Query: 562 SASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTIL 621
               L   MV  G  P  +T++ LI  L   G+ DEA + L+ +   G   D L+Y+++L
Sbjct: 584 FVKELQMKMVEMGLRPDALTFSTLINRLSKLGELDEAKSALERMVASGFTPDALVYDSLL 643

Query: 622 KKACEKGRIDVIEFIIEQMHQ 642
           K    KG  D  E II  +HQ
Sbjct: 644 KGLSSKG--DTTE-IINLLHQ 661



 Score = 66.2 bits (160), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 89/212 (41%), Gaps = 16/212 (7%)

Query: 491 GMIRELIQYFCDSKTP-LGTPTY---------------NTVLHSLVEAQESHRAMEIFKQ 534
           G +  LI+ F D++ P LG                   N VL  L        AM + ++
Sbjct: 110 GSLSALIECFADAQKPQLGFGVVGLVLKRGFTVNVFIMNIVLKGLCRNGGVFEAMGLIRE 169

Query: 535 MKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGD 594
           M    + P+  +YN +I+     +  K A  L+  M   G +P ++T T L+  L   G 
Sbjct: 170 MGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGR 229

Query: 595 FDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHF 654
            DEA+ LL+ +  +G   DV+LY T++   C  G +D  + + ++M    +  +  T   
Sbjct: 230 MDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYSC 289

Query: 655 VFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           +  G    G    A   L  ++   +  +V T
Sbjct: 290 LVHGLCRLGQWKEANTVLNAMAEHGIHPDVVT 321



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 95/207 (45%), Gaps = 7/207 (3%)

Query: 472 NIQHSHISMKNLLKALG---AEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRA 528
           N+   +I +K L +  G   A G+IRE+ +    S +P    +YNT+++ L +A++   A
Sbjct: 143 NVFIMNIVLKGLCRNGGVFEAMGLIREMGR---KSVSP-DIVSYNTLINGLCKAKKLKEA 198

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
           + +  +M+  G  PN+ T   ++D          A  L+  M + GF    + Y  LI  
Sbjct: 199 VGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISG 258

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
             + G+ D    L D +  +GI  +V+ Y+ ++   C  G+      ++  M ++ + PD
Sbjct: 259 FCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPD 318

Query: 649 PSTCHFVFSGYVNCGFHNSAMEALQVL 675
             T   +  G    G    AM+ L ++
Sbjct: 319 VVTYTGLIDGLCKDGRATHAMDLLNLM 345



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/218 (21%), Positives = 90/218 (41%), Gaps = 14/218 (6%)

Query: 467 DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQ 523
           +M R ++    +S   L+  L     ++E +    + +     P   T  T++  L +  
Sbjct: 169 EMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDG 228

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
               AME+ + MK  G   +   Y  +I              L   M+  G     +TY+
Sbjct: 229 RMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYS 288

Query: 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR----IDVIEFIIEQ 639
            L+  L   G + EA  +L+ ++  GI  DV+ Y  ++   C+ GR    +D++  ++E+
Sbjct: 289 CLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEK 348

Query: 640 MHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSM 677
                 +P   T + + SG    G     ++A ++L M
Sbjct: 349 GE----EPSNVTYNVLLSGLCKEGL---VIDAFKILRM 379



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/168 (19%), Positives = 78/168 (46%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           T N ++ +L  ++    A  ++++M    + P+  + + +I+C +  +  +    +V ++
Sbjct: 76  TCNFLVDALARSRNYGLAFSVYRRMTHVDVLPSFGSLSALIECFADAQKPQLGFGVVGLV 135

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           ++ GF         ++K L   G   EA+ L+  +  + +  D++ YNT++   C+  ++
Sbjct: 136 LKRGFTVNVFIMNIVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKL 195

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678
                ++ +M      P+  TC  +  G    G  + AME L+ +  +
Sbjct: 196 KEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKK 243



 Score = 43.1 bits (100), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 62/147 (42%), Gaps = 2/147 (1%)

Query: 514 TVLHSLVEAQESH--RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           T L SL +   S    A+ +F       + P+ AT N ++D  +  R +  A ++   M 
Sbjct: 42  TQLRSLCQKPNSQFTEAVSLFHSALDFNLLPSWATCNFLVDALARSRNYGLAFSVYRRMT 101

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
                P   + +ALI+   D         ++ LV   G   +V + N +LK  C  G + 
Sbjct: 102 HVDVLPSFGSLSALIECFADAQKPQLGFGVVGLVLKRGFTVNVFIMNIVLKGLCRNGGVF 161

Query: 632 VIEFIIEQMHQNKVQPDPSTCHFVFSG 658
               +I +M +  V PD  + + + +G
Sbjct: 162 EAMGLIREMGRKSVSPDIVSYNTLING 188



 Score = 40.8 bits (94), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 68/330 (20%), Positives = 128/330 (38%), Gaps = 15/330 (4%)

Query: 54  ATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHIL-NYCARSPDPLFVMETWRM 112
            T   ++D LC+  R+  +  LLNL        ++  +++L +   +    +   +  RM
Sbjct: 320 VTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRM 379

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYG-IYPILPVYNSFLGACAKL 171
           M EK    +   Y  +M+ LC  G ++EA  L   + +    + P +  +N  +G   K 
Sbjct: 380 MIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKE 439

Query: 172 HSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK-HYSLSIFSL 230
             +  A      M  +    N VTY  LL   +    +    E+W+  +   +  + F+ 
Sbjct: 440 GRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTY 499

Query: 231 RKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRT------SEGRLRSSRLDIPIPLN 284
              +  F ++R L  A      M    +   L+   T       EG L  ++       N
Sbjct: 500 SILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGN 559

Query: 285 ALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGL 344
           A     ++  SF+ +I    +  +    ++L ++M  +GL+P + T+   I  +     L
Sbjct: 560 ANCEPDII--SFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDALTFSTLINRLSKLGEL 617

Query: 345 RNGMEVLKIMQQNNLKPQ----DSTIATLS 370
                 L+ M  +   P     DS +  LS
Sbjct: 618 DEAKSALERMVASGFTPDALVYDSLLKGLS 647


>gi|359481811|ref|XP_002278330.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41720-like [Vitis vinifera]
          Length = 848

 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 124/569 (21%), Positives = 219/569 (38%), Gaps = 94/569 (16%)

Query: 104 LFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNS 163
            F M+ WR   + E       Y  ++ A  + G    A N++  +  R  I P    YN+
Sbjct: 185 FFEMQKWRCKPDAET------YNALINAHGRAGQWRWAMNIMDDM-LRAAIPPSRSTYNN 237

Query: 164 FLGACAKLHSMVHA-NLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH 222
            + AC    +   A N+C  + ++  VG + VT+  +L         S V          
Sbjct: 238 LINACGSSGNWKEALNVCKKMTENG-VGPDLVTHNIVLSAYKRGNQYSKV---------- 286

Query: 223 YSLSIFSLRKFVWSFTRLR-DLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPI 281
             LS F L K     T +R D  +    +  +V L   GK      S    RS      +
Sbjct: 287 --LSYFELMK----GTNIRPDTTTLNIVIYCLVKLGQNGKAIDIFNSMKEKRSECYPDVV 340

Query: 282 PLNALPVMKVLRWSFSDVIH---ACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAI 338
                        +F+ +IH    CG+ +N   A   ML   + GL+P+  +Y+  I A 
Sbjct: 341 -------------TFTTIIHLYSVCGQIENCQTAFNTML---AEGLKPNIVSYNALIGAY 384

Query: 339 VSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPF 398
            S    +    V   +++N   P                         D +S       +
Sbjct: 385 ASHGMDKEAFSVFNEIKKNGFHP-------------------------DVVS-------Y 412

Query: 399 SAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDS 457
           ++ L A     KPE+A+K+F  MR+   +P++ +Y  L   +G+      +G +   V+ 
Sbjct: 413 TSLLNAYGKSGKPEKAMKVFELMRRNHCKPNLVSYNALIDAYGS------KGLLTEAVE- 465

Query: 458 AKRINAIEMDMARNNIQHSHISMKNLLKALGAEGM---IRELIQYFCDSKTPLGTPTYNT 514
                 I  +M RN +Q + +S+  LL A G  G    I+ ++         L T  YN+
Sbjct: 466 ------ILHEMERNGVQPNIVSICTLLAACGRCGQKVKIKSVLSAAELRGIKLNTTAYNS 519

Query: 515 VLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDG 574
            + S +   E  +A+ +++ M+T  + P+  TYN++I  C  +  +  A   +  M+   
Sbjct: 520 AIGSYLSVGEYDKALSLYRAMRTKKVKPDPVTYNVLISGCCKMSKYGEALGFLDEMMDLK 579

Query: 575 FYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIE 634
                  Y+++I      G   EA ++   + + G   DV+ Y  ++         +   
Sbjct: 580 IPLSKEVYSSVICAYSKQGQVTEAESMFTKMKMVGCRPDVITYTAMIHAYDVAENWEKAS 639

Query: 635 FIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
            +  +M  + VQPD   C  +   +   G
Sbjct: 640 ALFLEMETDDVQPDSIACSSLMRAFNKGG 668



 Score = 65.9 bits (159), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 68/325 (20%), Positives = 135/325 (41%), Gaps = 53/325 (16%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           S++ +++A G++     A ++   M+    +P+  +Y+  I A  S   L   +E+L  M
Sbjct: 411 SYTSLLNAYGKSGKPEKAMKVFELMRRNHCKPNLVSYNALIDAYGSKGLLTEAVEILHEM 470

Query: 355 QQNNLKPQDSTIATLSVECSK-----ALELDLAEALLDQISRCTNPKPFSAFLAACDTMD 409
           ++N ++P   +I TL   C +      ++  L+ A L  I    N   +++ + +  ++ 
Sbjct: 471 ERNGVQPNIVSICTLLAACGRCGQKVKIKSVLSAAELRGIK--LNTTAYNSAIGSYLSVG 528

Query: 410 KPERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
           + ++A+ ++  MR +K++PD  TY +L S                               
Sbjct: 529 EYDKALSLYRAMRTKKVKPDPVTYNVLIS------------------------------- 557

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRA 528
                      M    +ALG        +    D K PL    Y++V+ +  +  +   A
Sbjct: 558 -------GCCKMSKYGEALG-------FLDEMMDLKIPLSKEVYSSVICAYSKQGQVTEA 603

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
             +F +MK  G  P+  TY  MI    +   ++ ASAL   M  D   P ++  ++L++ 
Sbjct: 604 ESMFTKMKMVGCRPDVITYTAMIHAYDVAENWEKASALFLEMETDDVQPDSIACSSLMRA 663

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHD 613
               G   + L L + +  + IP +
Sbjct: 664 FNKGGQPAKVLVLAEFMREKKIPFN 688



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/221 (21%), Positives = 95/221 (42%), Gaps = 17/221 (7%)

Query: 483 LLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESH----RAMEIFKQMKTC 538
           L++ +   G +   +Q F   K        N + + ++     H    +A  +F +M+  
Sbjct: 132 LIREITQIGSLEHSVQVFRWMKNQKNYCARNDIYNMMIRLHARHNIVDQARGLFFEMQKW 191

Query: 539 GIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEA 598
              P+A TYN +I+       ++ A  ++  M+R    P   TY  LI      G++ EA
Sbjct: 192 RCKPDAETYNALINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLINACGSSGNWKEA 251

Query: 599 LNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
           LN+   ++  G+  D++ +N +L       +   +    E M    ++PD +T + V   
Sbjct: 252 LNVCKKMTENGVGPDLVTHNIVLSAYKRGNQYSKVLSYFELMKGTNIRPDTTTLNIVIYC 311

Query: 659 YVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSD-FEDLI 698
            V  G +  A++              ++++EKRS+ + D++
Sbjct: 312 LVKLGQNGKAIDIF------------NSMKEKRSECYPDVV 340



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 60/333 (18%), Positives = 137/333 (41%), Gaps = 20/333 (6%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           S   ++ ACGR       + ++   +  G++ ++  Y+  I + +S       + + + M
Sbjct: 481 SICTLLAACGRCGQKVKIKSVLSAAELRGIKLNTTAYNSAIGSYLSVGEYDKALSLYRAM 540

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNP---KPFSAFLAACDTMDKP 411
           +   +KP   T   L   C K  +   A   LD++     P   + +S+ + A     + 
Sbjct: 541 RTKKVKPDPVTYNVLISGCCKMSKYGEALGFLDEMMDLKIPLSKEVYSSVICAYSKQGQV 600

Query: 412 ERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
             A  +F KM+    RPD+ TY  +              + +   ++ ++ +A+ ++M  
Sbjct: 601 TEAESMFTKMKMVGCRPDVITYTAMI-------------HAYDVAENWEKASALFLEMET 647

Query: 471 NNIQHSHISMKNLLKAL---GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHR 527
           +++Q   I+  +L++A    G    +  L ++  + K P    ++  ++ +    +E   
Sbjct: 648 DDVQPDSIACSSLMRAFNKGGQPAKVLVLAEFMREKKIPFNNSSFFEMVSACSLLREWRE 707

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
            + + K M+      +    N ++         ++   L   +V  G      TY+ L+K
Sbjct: 708 IIGLIKLMEPSISVVSIGLLNQLLHFLGKSGKIETMMKLFYKIVASGAEINFYTYSILLK 767

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTI 620
            LL  G++ + + +L  +   G+   V +Y +I
Sbjct: 768 NLLAAGNWRKYIEVLQWMEEAGLQPSVGMYRSI 800


>gi|357159753|ref|XP_003578548.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At4g17915-like [Brachypodium distachyon]
          Length = 460

 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 79/371 (21%), Positives = 141/371 (38%), Gaps = 49/371 (13%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           AE +++    LG+ P   TY+  + A     GL  G  VL+ M++  + P          
Sbjct: 29  AESVLIDAILLGMPPDVVTYNTLLAAHCRAAGLDAGFAVLRRMREAGVWP---------- 78

Query: 372 ECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIR 430
                                 N   +++ + A   +    RA+ +F +M R  + PD  
Sbjct: 79  ----------------------NAVTYNSLIVAASRVGLTMRALDLFDEMLRAGIAPDAW 116

Query: 431 TYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAE 490
           +Y +L         P +   +F+             DMA   +     +   LL  L   
Sbjct: 117 SYNVLMHCLFRSGHPEDAYRVFA-------------DMAEKGVTPCTTTYNTLLDGLFKA 163

Query: 491 GMIR---ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATY 547
           G       + +Y      P+G  TYNT+++ L  + +   A  I +++      PNA TY
Sbjct: 164 GHATNAYRMFRYLQRVGLPVGIVTYNTMINGLCRSGKVGYARMILRELGRTEHTPNAVTY 223

Query: 548 NIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSL 607
             ++ CC     F         ++  G  P    Y  +I  L+  G  +EA    +L+  
Sbjct: 224 TTVMKCCFRYGRFDQGLETFLSLLEGGHIPDVFPYCTVISALVKKGRVEEANAYSELMIQ 283

Query: 608 EGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNS 667
            G   D   YNT++   C++G++D    ++  M +  ++ D  T   + +G    G   +
Sbjct: 284 SGSRLDTACYNTLIHLRCQEGKLDDAFELLSMMEEGGLESDEYTFSILVNGLCKLGHIEA 343

Query: 668 AMEALQVLSMR 678
           A + L  + MR
Sbjct: 344 AEKQLCYMEMR 354



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 67/173 (38%)

Query: 503 SKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKS 562
           ++  L T   N  L +L  +    RA  +       G+PP+  TYN ++          +
Sbjct: 4   ARAQLSTRLMNVCLAALCRSGSLERAESVLIDAILLGMPPDVVTYNTLLAAHCRAAGLDA 63

Query: 563 ASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILK 622
             A++  M   G +P  +TY +LI      G    AL+L D +   GI  D   YN ++ 
Sbjct: 64  GFAVLRRMREAGVWPNAVTYNSLIVAASRVGLTMRALDLFDEMLRAGIAPDAWSYNVLMH 123

Query: 623 KACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
                G  +    +   M +  V P  +T + +  G    G   +A    + L
Sbjct: 124 CLFRSGHPEDAYRVFADMAEKGVTPCTTTYNTLLDGLFKAGHATNAYRMFRYL 176



 Score = 50.1 bits (118), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 71/392 (18%), Positives = 143/392 (36%), Gaps = 55/392 (14%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           WS++ ++H   R+ +   A ++   M   G+ P + TY+  +  +       N   + + 
Sbjct: 116 WSYNVLMHCLFRSGHPEDAYRVFADMAEKGVTPCTTTYNTLLDGLFKAGHATNAYRMFRY 175

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRC---TNPKPFSAFLAACDTMDK 410
           +Q+  L     T  T+     ++ ++  A  +L ++ R     N   ++  +  C    +
Sbjct: 176 LQRVGLPVGIVTYNTMINGLCRSGKVGYARMILRELGRTEHTPNAVTYTTVMKCCFRYGR 235

Query: 411 PERAIKIFAKMRQKLR-PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
            ++ ++ F  + +    PD+  Y  + S         EE N +S++              
Sbjct: 236 FDQGLETFLSLLEGGHIPDVFPYCTVISALVK-KGRVEEANAYSEL-------------- 280

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAM 529
                                     +IQ    S + L T  YNT++H   +  +   A 
Sbjct: 281 --------------------------MIQ----SGSRLDTACYNTLIHLRCQEGKLDDAF 310

Query: 530 EIFKQMKTCGIPPNAATYNIMID-CCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
           E+   M+  G+  +  T++I+++  C +     +   L  M +RD      + Y  L+  
Sbjct: 311 ELLSMMEEGGLESDEYTFSILVNGLCKLGHIEAAEKQLCYMEMRD-MESNVVAYNCLVDA 369

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
           L      D A+ LL  + L+    D   Y +++   C  GR  +    +    +      
Sbjct: 370 LCKSDQVDAAIRLLHDMKLK----DDFTYTSLVHGLCRVGRYHMASKFLRICLREGNNVL 425

Query: 649 PSTCHFVFSGYVNCGFHNSAMEALQVLSMRML 680
            S    V +G  + GF N   +    L M  L
Sbjct: 426 ASAKRAVIAGLRSAGFKNDVRKVRSALYMARL 457


>gi|224069551|ref|XP_002326371.1| predicted protein [Populus trichocarpa]
 gi|222833564|gb|EEE72041.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score = 89.4 bits (220), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 85/415 (20%), Positives = 181/415 (43%), Gaps = 26/415 (6%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           ++ + +++A  +  N   A   + ++   GL P S TY   I     +  + +  +V  +
Sbjct: 215 YTLNTMVNAYSKMGNIVEANLYVSKIFQAGLSPDSFTYTSLILGYCRNNDVNSAYKVFNM 274

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR--C-TNPKPFSAFLAACDTMDK 410
           M     +  + +  T+     +A  +D   +L  ++    C    + ++  + A    D+
Sbjct: 275 MPNKGCRRNEVSYTTIIHGLCEAGRIDEGISLFKKMREDDCYPTVRTYTVIIHALFGNDR 334

Query: 411 PERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
               + +F +MR++   P++ TY ++      V+A  +E     ++D ++RI     +M 
Sbjct: 335 NLEGMDLFNEMRERSCEPNVHTYTVM------VDAMCKE----RKLDESRRILN---EMM 381

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESH 526
              +  S ++   L++    EG I   ++     ++    P   TYN ++    + +  H
Sbjct: 382 EKGLVPSVVTYNALIRGYCEEGRIEAALEILGLMESNNCRPNERTYNELICGFSKRKHVH 441

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
           +AM +  +M    + P+  TYN +I        F SA  L+ ++  +G  P   TY+  I
Sbjct: 442 KAMTLLSKMLESKLTPSLVTYNSLIHVQCKAGHFDSAYKLLDLLKENGLVPDQWTYSVFI 501

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
             L      +EA +L + +  +GI  + ++Y  ++   C+ G+ID    ++E+MH     
Sbjct: 502 DTLCKSKRMEEACDLFNSLKEKGIKANEVMYTALIDGHCKAGKIDEAISLLERMHSEDCL 561

Query: 647 PDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST----LEE--KRSDFE 695
           P+ ST + +  G    G     +  ++ +S   +   V+T    +EE  +  DF+
Sbjct: 562 PNSSTYNSLIYGVCKEGKVQEGLSMVENMSKMGVKPTVATYTILIEEMLREGDFD 616



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 103/469 (21%), Positives = 184/469 (39%), Gaps = 38/469 (8%)

Query: 228 FSLRKFVWSFTRLRDLKSAYETLQHMVALA-MMGKLYINRTSEGRLRSSRLDIPIPL--- 283
           F+    +  + R  D+ SAY+    M        ++       G   + R+D  I L   
Sbjct: 250 FTYTSLILGYCRNNDVNSAYKVFNMMPNKGCRRNEVSYTTIIHGLCEAGRIDEGISLFKK 309

Query: 284 ----NALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIV 339
               +  P ++    +++ +IHA      +     L  +M+    +P+ HTY   + A+ 
Sbjct: 310 MREDDCYPTVR----TYTVIIHALFGNDRNLEGMDLFNEMRERSCEPNVHTYTVMVDAMC 365

Query: 340 SDRGLRNGMEVLKIMQQNNLKPQDSTI-ATLSVECSKA-LELDLAEALLDQISRC-TNPK 396
            +R L     +L  M +  L P   T  A +   C +  +E  L    L + + C  N +
Sbjct: 366 KERKLDESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALEILGLMESNNCRPNER 425

Query: 397 PFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQV 455
            ++  +          +A+ + +KM   KL P + TY  L      ++   + G      
Sbjct: 426 TYNELICGFSKRKHVHKAMTLLSKMLESKLTPSLVTYNSL------IHVQCKAG----HF 475

Query: 456 DSAKRINAIEMDMAR-NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSK---TPLGTPT 511
           DSA ++    +D+ + N +     +    +  L     + E    F   K          
Sbjct: 476 DSAYKL----LDLLKENGLVPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEVM 531

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           Y  ++    +A +   A+ + ++M +    PN++TYN +I         +   ++V  M 
Sbjct: 532 YTALIDGHCKAGKIDEAISLLERMHSEDCLPNSSTYNSLIYGVCKEGKVQEGLSMVENMS 591

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
           + G  P   TYT LI+ +L  GDFD A  + + +   G   DV  Y   +   C  G + 
Sbjct: 592 KMGVKPTVATYTILIEEMLREGDFDHANRVFNQMVSFGHKPDVYTYTAFIHTYCTSGNVK 651

Query: 632 VIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRML 680
             E ++ +M +  V PD  T   + S Y   G    A +A  VL  RML
Sbjct: 652 EAEGMMARMIEAGVMPDSLTYTLLISAYERLGL---AYDAFNVLK-RML 696



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 96/502 (19%), Positives = 196/502 (39%), Gaps = 72/502 (14%)

Query: 154 IYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVH 213
           I P +   N+ + A +K+ ++V ANL +  +    +  +  TYT L+       ++++ +
Sbjct: 210 IVPNIYTLNTMVNAYSKMGNIVEANLYVSKIFQAGLSPDSFTYTSLILGYCRNNDVNSAY 269

Query: 214 EIWE--------------DYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVAL--A 257
           +++                 I H       + + +  F ++R+    Y T++    +  A
Sbjct: 270 KVFNMMPNKGCRRNEVSYTTIIHGLCEAGRIDEGISLFKKMRE-DDCYPTVRTYTVIIHA 328

Query: 258 MMGKLYINRTSEG-------RLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSG 310
           + G    +R  EG       R RS   ++               +++ ++ A  + +   
Sbjct: 329 LFGN---DRNLEGMDLFNEMRERSCEPNV--------------HTYTVMVDAMCKERKLD 371

Query: 311 LAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLS 370
            + +++ +M   GL PS  TY+  IR    +  +   +E+L +M+ NN +P + T   L 
Sbjct: 372 ESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALEILGLMESNNCRPNERTYNELI 431

Query: 371 VECSKALELDLAEALLDQI--SRCTNPK--PFSAFLAACDTMDKPERAIKIFAKMRQK-L 425
              SK   +  A  LL ++  S+ T P    +++ +         + A K+   +++  L
Sbjct: 432 CGFSKRKHVHKAMTLLSKMLESKLT-PSLVTYNSLIHVQCKAGHFDSAYKLLDLLKENGL 490

Query: 426 RPDIRTYELLFSLFGNVNAPYEEGNMFSQ----------------VDSAKRINAIEMDMA 469
            PD  TY +            E  ++F+                 +D   +   I+  ++
Sbjct: 491 VPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEVMYTALIDGHCKAGKIDEAIS 550

Query: 470 RNNIQHSHISMKN------LLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLV 520
                HS   + N      L+  +  EG ++E   +++            TY  ++  ++
Sbjct: 551 LLERMHSEDCLPNSSTYNSLIYGVCKEGKVQEGLSMVENMSKMGVKPTVATYTILIEEML 610

Query: 521 EAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTM 580
              +   A  +F QM + G  P+  TY   I         K A  +++ M+  G  P ++
Sbjct: 611 REGDFDHANRVFNQMVSFGHKPDVYTYTAFIHTYCTSGNVKEAEGMMARMIEAGVMPDSL 670

Query: 581 TYTALIKILLDYGDFDEALNLL 602
           TYT LI      G   +A N+L
Sbjct: 671 TYTLLISAYERLGLAYDAFNVL 692



 Score = 60.5 bits (145), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 82/370 (22%), Positives = 162/370 (43%), Gaps = 28/370 (7%)

Query: 107 METWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFL- 165
           M+ +  M E+    N   Y +M+ A+CK   L+E+  ++  + E+ G+ P +  YN+ + 
Sbjct: 339 MDLFNEMRERSCEPNVHTYTVMVDAMCKERKLDESRRILNEMMEK-GLVPSVVTYNALIR 397

Query: 166 GACAKLHSMVHANL-CLDLMDSRMVGKNEVTYTELL----KLAVWQKNLSAVHEIWEDYI 220
           G C +    + A L  L LM+S     NE TY EL+    K     K ++ + ++ E  +
Sbjct: 398 GYCEE--GRIEAALEILGLMESNNCRPNERTYNELICGFSKRKHVHKAMTLLSKMLESKL 455

Query: 221 KHYSLSIFSLRKFVWSFTRLRDLKSAYETL-----QHMVALAMMGKLYINRTSEGRLRSS 275
              + S+ +    +    +     SAY+ L       +V       ++I+   + +    
Sbjct: 456 ---TPSLVTYNSLIHVQCKAGHFDSAYKLLDLLKENGLVPDQWTYSVFIDTLCKSKRMEE 512

Query: 276 RLDIPIPLNALPV--MKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDG 333
             D+    N+L    +K     ++ +I    +      A  L+ +M S    P+S TY+ 
Sbjct: 513 ACDL---FNSLKEKGIKANEVMYTALIDGHCKAGKIDEAISLLERMHSEDCLPNSSTYNS 569

Query: 334 FIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT 393
            I  +  +  ++ G+ +++ M +  +KP  +T   L  E  +  + D A  + +Q+    
Sbjct: 570 LIYGVCKEGKVQEGLSMVENMSKMGVKPTVATYTILIEEMLREGDFDHANRVFNQMVSFG 629

Query: 394 NPKP----FSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEE 448
           + KP    ++AF+    T    + A  + A+M +  + PD  TY LL S +  +   Y+ 
Sbjct: 630 H-KPDVYTYTAFIHTYCTSGNVKEAEGMMARMIEAGVMPDSLTYTLLISAYERLGLAYDA 688

Query: 449 GNMFSQVDSA 458
            N+  ++  A
Sbjct: 689 FNVLKRMLDA 698



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 67/150 (44%)

Query: 502 DSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFK 561
           D K  L   +YN +L  L           ++ +M    I PN  T N M++  S +    
Sbjct: 172 DIKFKLSVRSYNELLMMLARFLMIDEMKRVYTEMLNDMIVPNIYTLNTMVNAYSKMGNIV 231

Query: 562 SASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTIL 621
            A+  VS + + G  P + TYT+LI       D + A  + +++  +G   + + Y TI+
Sbjct: 232 EANLYVSKIFQAGLSPDSFTYTSLILGYCRNNDVNSAYKVFNMMPNKGCRRNEVSYTTII 291

Query: 622 KKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
              CE GRID    + ++M ++   P   T
Sbjct: 292 HGLCEAGRIDEGISLFKKMREDDCYPTVRT 321


>gi|224125496|ref|XP_002319601.1| predicted protein [Populus trichocarpa]
 gi|222857977|gb|EEE95524.1| predicted protein [Populus trichocarpa]
          Length = 460

 Score = 89.4 bits (220), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 66/280 (23%), Positives = 118/280 (42%), Gaps = 17/280 (6%)

Query: 398 FSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVD 456
           F+  L+   +  K   A+K+F +M +    PD+ TY  +      +N   + GN    + 
Sbjct: 13  FNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTI------INGLCKMGNTTMALQ 66

Query: 457 SAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCD---SKTPLGTPTYN 513
             K+       M     + + ++   ++ +L  + ++ E + +F +      P    TY+
Sbjct: 67  LLKK-------MEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYS 119

Query: 514 TVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRD 573
           ++LH        + A  +FKQM    + PN  T+ I+ID     R    A  +   M   
Sbjct: 120 SILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEK 179

Query: 574 GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVI 633
           G  P   TY AL+         DEA  L +++  +G   +V  YN ++   C+ GRID  
Sbjct: 180 GLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEA 239

Query: 634 EFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           + ++ +M    + PD  T   +  G+   G    A E L+
Sbjct: 240 KGLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLK 279



 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 88/402 (21%), Positives = 174/402 (43%), Gaps = 24/402 (5%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           ++S +I+   +  N+ +A QL+ +M+  G +P+   Y+  I ++  DR +   M+    M
Sbjct: 47  TYSTIINGLCKMGNTTMALQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEM 106

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPKPFSAFLAACDTMDKPE- 412
            +  + P   T +++         ++ A +L  Q + R   P   + F    D + K   
Sbjct: 107 VKEGIPPDVFTYSSILHGFCNLGRVNEATSLFKQMVERNVIPNKVT-FTILIDGLCKKRM 165

Query: 413 --RAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI-NAIEMDM 468
              A  +F  M +K L PD+ TY  L   + +           SQ+D A+++ N ++   
Sbjct: 166 ISEAWLVFETMTEKGLEPDVYTYNALVDGYCSR----------SQMDEAQKLFNIMDRKG 215

Query: 469 ARNNIQHSHISMKNLLKAL---GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQES 525
              N++  +I +    K+     A+G++ E+      S TP    TY+T++    +    
Sbjct: 216 CAPNVRSYNILINGHCKSGRIDEAKGLLAEMSH---KSLTP-DIFTYSTLMRGFCQVGRP 271

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
             A E+ K+M + G+ PN  TY+I++D          A  L+  M      P    YT L
Sbjct: 272 QEAQELLKEMCSYGLLPNLITYSIVLDGLCKHGHLDEAFELLKAMQESKIEPNIFIYTIL 331

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           I+ +  +G  + A  L   + ++GI   V+ Y  ++    + G  +    +  +M  N  
Sbjct: 332 IEGMCTFGKLEAARELFSNLFVKGIQPTVVTYTVMISGLLKGGLSNEACELFREMAVNGC 391

Query: 646 QPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTL 687
            P+  T + +  G++  G   +A+  ++ +  +    + ST 
Sbjct: 392 LPNSCTYNVIIQGFLRNGDTPNAVRLIEEMVGKGFSADSSTF 433



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 84/377 (22%), Positives = 158/377 (41%), Gaps = 24/377 (6%)

Query: 319 MQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALE 378
           M  LGLQP+  T++  +  + S   + + +++   M +   +P   T +T+     K   
Sbjct: 1   MFKLGLQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGN 60

Query: 379 LDLAEALLDQISRCTNPKPFSAFLAACDTMDKPE---RAIKIFAKM-RQKLRPDIRTYEL 434
             +A  LL ++          A+    D++ K      A+  F++M ++ + PD+ TY  
Sbjct: 61  TTMALQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSS 120

Query: 435 LFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIR 494
           +   F N+    E  ++F Q             M   N+  + ++   L+  L  + MI 
Sbjct: 121 ILHGFCNLGRVNEATSLFKQ-------------MVERNVIPNKVTFTILIDGLCKKRMIS 167

Query: 495 ELIQYFCDSKTPLGTP----TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIM 550
           E    F ++ T  G      TYN ++       +   A ++F  M   G  PN  +YNI+
Sbjct: 168 EAWLVF-ETMTEKGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNIL 226

Query: 551 IDC-CSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEG 609
           I+  C   R    A  L++ M      P   TY+ L++     G   EA  LL  +   G
Sbjct: 227 INGHCKSGR-IDEAKGLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYG 285

Query: 610 IPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAM 669
           +  +++ Y+ +L   C+ G +D    +++ M ++K++P+      +  G    G   +A 
Sbjct: 286 LLPNLITYSIVLDGLCKHGHLDEAFELLKAMQESKIEPNIFIYTILIEGMCTFGKLEAAR 345

Query: 670 EALQVLSMRMLCEEVST 686
           E    L ++ +   V T
Sbjct: 346 ELFSNLFVKGIQPTVVT 362



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 83/340 (24%), Positives = 141/340 (41%), Gaps = 30/340 (8%)

Query: 33  KLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFH 92
           KL L  TL T   L     SKA   +I+DA+      +    ++ +GH    +    +  
Sbjct: 3   KLGLQPTLVTFNTLLSGLCSKA---KIMDAV------KLFDEMVKMGHEPDVI---TYST 50

Query: 93  ILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGE-- 150
           I+N   +  +    ++  + MEEK    N   Y  ++ +LCK   + EA +   F  E  
Sbjct: 51  IINGLCKMGNTTMALQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMD---FFSEMV 107

Query: 151 RYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLS 210
           + GI P +  Y+S L     L  +  A      M  R V  N+VT+T L+     ++ +S
Sbjct: 108 KEGIPPDVFTYSSILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMIS 167

Query: 211 AVHEIWEDYI-KHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHM--VALAMMGKLYINRT 267
               ++E    K     +++    V  +     +  A +    M     A   + Y N  
Sbjct: 168 EAWLVFETMTEKGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSY-NIL 226

Query: 268 SEGRLRSSRLDIPIPLNALPVMKVLR---WSFSDVIHA---CGRTQNSGLAEQLMLQMQS 321
             G  +S R+D    L A    K L    +++S ++      GR Q    A++L+ +M S
Sbjct: 227 INGHCKSGRIDEAKGLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQE---AQELLKEMCS 283

Query: 322 LGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKP 361
            GL P+  TY   +  +     L    E+LK MQ++ ++P
Sbjct: 284 YGLLPNLITYSIVLDGLCKHGHLDEAFELLKAMQESKIEP 323


>gi|302781560|ref|XP_002972554.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
 gi|300160021|gb|EFJ26640.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
          Length = 581

 Score = 89.4 bits (220), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 121/538 (22%), Positives = 207/538 (38%), Gaps = 126/538 (23%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGE--RYGIYPILPVYNSFLGACAKLHSMVHANLCLD 182
           Y +++Q+LC+ G  E A  L  F GE  R G+ P +  YN+ +    K            
Sbjct: 48  YNIVLQSLCRAG--ETARALEIFRGEMARDGVAPTIVTYNTIINGLCK------------ 93

Query: 183 LMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH-YSLSIFSLRKFVWSFTRLR 241
                    NE               L A  E++E+ +K  +   + +    + S  +  
Sbjct: 94  --------SNE---------------LGAGMELFEELVKRGHHPDVVTYNTLIDSLCKAG 130

Query: 242 DLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIH 301
           DL+ A      M                    SSR  +P   N +        ++S +I+
Sbjct: 131 DLEEARRLHGGM--------------------SSRGCVP---NVV--------TYSVLIN 159

Query: 302 ACGRTQNSGLAEQLMLQM--QSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNL 359
              +      A +L+ +M  +S  + P+  TY+ F+  +          E+++ ++  +L
Sbjct: 160 GLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSL 219

Query: 360 K--PQDSTIATLSVECSKALELDLAEALLDQI---SRCTNPKPFSAFLAACDTMDKPERA 414
           +  P   T +TL     K  + D  EA  D +       N   ++A +      DK ERA
Sbjct: 220 RVSPDTVTFSTLIDGLCKCGQTD--EACNDDMIAGGYVPNVVTYNALVNGLCKADKMERA 277

Query: 415 IKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNI 473
             +   M  K + PD+ TY +L   F             S+VD A               
Sbjct: 278 HAMIESMVDKGVTPDVITYSVLVDAFCKA----------SRVDEALE------------- 314

Query: 474 QHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFK 533
                    LL  + + G    ++             T+N+++  L ++  S  A +I  
Sbjct: 315 ---------LLHGMASRGCTPNVV-------------TFNSIIDGLCKSDRSGEAFQIAL 352

Query: 534 QMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYG 593
           Q+    + P+  T+NI+I        F+ ASAL   MV     P  MT+ ALI  L   G
Sbjct: 353 QVYNRMLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNMQPDVMTFGALIDGLCKAG 412

Query: 594 DFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
             + A ++LDL+   G+P +V+ YN ++   C+ GRI+     +E+M  +   P+  T
Sbjct: 413 QVEAARDILDLMGNLGVPPNVVTYNVLVHGLCKSGRIEEPCEFLEEMVSSGCVPESMT 470



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 85/182 (46%), Gaps = 6/182 (3%)

Query: 475 HSHISMKNLLKALGAEGMIRELI-----QYFCDSKTPLGTPTYNTVLHSLVEAQESHRAM 529
           H H +  NLL  +    +  + +     ++F    +      YN VL SL  A E+ RA+
Sbjct: 6   HHHTAAANLLVPITTATINTQRVNLCPLKFFFVRSSSRSVADYNIVLQSLCRAGETARAL 65

Query: 530 EIFK-QMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
           EIF+ +M   G+ P   TYN +I+         +   L   +V+ G +P  +TY  LI  
Sbjct: 66  EIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEELVKRGHHPDVVTYNTLIDS 125

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
           L   GD +EA  L   +S  G   +V+ Y+ ++   C+ GRID    +I++M +      
Sbjct: 126 LCKAGDLEEARRLHGGMSSRGCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVL 185

Query: 649 PS 650
           P+
Sbjct: 186 PN 187



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 76/351 (21%), Positives = 136/351 (38%), Gaps = 49/351 (13%)

Query: 318 QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKAL 377
           +M   G+ P+  TY+  I  +     L  GME+ + + +    P   T  TL     KA 
Sbjct: 71  EMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEELVKRGHHPDVVTYNTLIDSLCKAG 130

Query: 378 ELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFS 437
           +L+ A  L   +S                                +   P++ TY +L +
Sbjct: 131 DLEEARRLHGGMSS-------------------------------RGCVPNVVTYSVLIN 159

Query: 438 LFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRE-- 495
               V           ++D A+ +   EM     ++  + I+  + L  L  + M  E  
Sbjct: 160 GLCKV----------GRIDEAREL-IQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEAC 208

Query: 496 -LIQYFCDS--KTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID 552
            L++   D   +    T T++T++  L +  ++  A      M   G  PN  TYN +++
Sbjct: 209 ELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACN--DDMIAGGYVPNVVTYNALVN 266

Query: 553 CCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPH 612
                   + A A++  MV  G  P  +TY+ L+         DEAL LL  ++  G   
Sbjct: 267 GLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTP 326

Query: 613 DVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
           +V+ +N+I+   C+  R      I  Q++   + PD  T + + +G    G
Sbjct: 327 NVVTFNSIIDGLCKSDRSGEAFQIALQVYNRMLVPDKVTFNILIAGACKAG 377



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 53/265 (20%), Positives = 112/265 (42%), Gaps = 16/265 (6%)

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFL-GACAKL 171
           M +K +  +   Y +++ A CK   ++EA  L++ +  R G  P +  +NS + G C   
Sbjct: 284 MVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASR-GCTPNVVTFNSIIDGLCKSD 342

Query: 172 HSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYSLSIFSL 230
            S     + L + + RM+  ++VT+  L+  A    N      ++E+ + K+    + + 
Sbjct: 343 RSGEAFQIALQVYN-RMLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNMQPDVMTF 401

Query: 231 RKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYI-NRTSEGRLRSSRLDIP-------IP 282
              +    +   +++A + L  M  L +   +   N    G  +S R++ P       + 
Sbjct: 402 GALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNVLVHGLCKSGRIEEPCEFLEEMVS 461

Query: 283 LNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDR 342
              +P       ++  +++A  R   +  A QL+ +++S G  P + TY+  +  +    
Sbjct: 462 SGCVPE----SMTYGSLVYALCRASRTDDALQLVSKLKSFGWDPDTVTYNILVDGLWKSG 517

Query: 343 GLRNGMEVLKIMQQNNLKPQDSTIA 367
                + VL+ M     +P   T A
Sbjct: 518 KTEQAITVLEEMVGKGHQPDSFTFA 542


>gi|297849642|ref|XP_002892702.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338544|gb|EFH68961.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 667

 Score = 89.4 bits (220), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 79/385 (20%), Positives = 166/385 (43%), Gaps = 47/385 (12%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           ++ + +I+   R   +  A  ++ ++  LG +P + T++  I  +  +  +   + ++  
Sbjct: 101 YTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLESKVSEAVVLVAR 160

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPER 413
           M +N  +P   T  ++     K+ +  LA  LL ++                      ER
Sbjct: 161 MVENGCQPNVVTYNSIVNGICKSGDTSLALDLLRKMD---------------------ER 199

Query: 414 AIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNI 473
            +K           D+ TY  +      +++   +G + + +   K       +M    I
Sbjct: 200 NVK----------ADVFTYSTI------IDSLCRDGCIDAAISLFK-------EMETKGI 236

Query: 474 QHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAME 530
           + S ++  +L+  L   G   + +Q   D  +    P   T+N ++   V+  +   A E
Sbjct: 237 KSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPNVITFNVLIDVFVKEGKLQEANE 296

Query: 531 IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590
           ++K+M T GI PN  TYN ++D   +      A+ ++ +MVR+   P  +T+T+LIK   
Sbjct: 297 LYKEMITKGISPNTITYNSLMDGYCMQNRLSEANNMLDLMVRNNCSPDIVTFTSLIKGYC 356

Query: 591 DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650
                DE + L   +S  G+  + + Y+ +++  C+ G++++ E + ++M    V PD  
Sbjct: 357 KVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQSGKLEIAEELFQEMVSLGVLPDVM 416

Query: 651 TCHFVFSGYVNCGFHNSAMEALQVL 675
           T   +  G  + G    A+E  + L
Sbjct: 417 TYGILLDGLCDNGKLEKALEIFEDL 441



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/222 (21%), Positives = 94/222 (42%), Gaps = 3/222 (1%)

Query: 468 MARNNIQHSHISMKNLLKAL---GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQE 524
           M  N  Q + ++  +++  +   G   +  +L++   +        TY+T++ SL     
Sbjct: 161 MVENGCQPNVVTYNSIVNGICKSGDTSLALDLLRKMDERNVKADVFTYSTIIDSLCRDGC 220

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
              A+ +FK+M+T GI  +  TYN ++        +     L+  M      P  +T+  
Sbjct: 221 IDAAISLFKEMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPNVITFNV 280

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
           LI + +  G   EA  L   +  +GI  + + YN+++   C + R+     +++ M +N 
Sbjct: 281 LIDVFVKEGKLQEANELYKEMITKGISPNTITYNSLMDGYCMQNRLSEANNMLDLMVRNN 340

Query: 645 VQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
             PD  T   +  GY      +  M+  + +S R L     T
Sbjct: 341 CSPDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVT 382



 Score = 66.6 bits (161), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 79/177 (44%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           T N +++      ++  A  +  ++   G  P+  T+N +I+   +      A  LV+ M
Sbjct: 102 TLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLESKVSEAVVLVARM 161

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           V +G  P  +TY +++  +   GD   AL+LL  +    +  DV  Y+TI+   C  G I
Sbjct: 162 VENGCQPNVVTYNSIVNGICKSGDTSLALDLLRKMDERNVKADVFTYSTIIDSLCRDGCI 221

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTL 687
           D    + ++M    ++    T + +  G    G  N  ++ L+ ++ R +   V T 
Sbjct: 222 DAAISLFKEMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPNVITF 278



 Score = 64.3 bits (155), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 85/404 (21%), Positives = 157/404 (38%), Gaps = 55/404 (13%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ +++   ++ ++ LA  L+ +M    ++    TY   I ++  D  +   + + K M
Sbjct: 172 TYNSIVNGICKSGDTSLALDLLRKMDERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEM 231

Query: 355 QQNNLKPQDSTIATLSVECSKALEL-DLAEALLDQISRCTNPK--PFSAFLAACDTMDKP 411
           +   +K    T  +L     KA +  D  + L D  SR   P    F+  +       K 
Sbjct: 232 ETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPNVITFNVLIDVFVKEGKL 291

Query: 412 ERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           + A +++ +M  K + P+  TY  L   +   N   E  NM                M R
Sbjct: 292 QEANELYKEMITKGISPNTITYNSLMDGYCMQNRLSEANNMLDL-------------MVR 338

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCD-SKTPL--GTPTYNTVLHSLVEAQESHR 527
           NN     ++  +L+K       + E ++ F   SK  L   T TY+ ++    ++ +   
Sbjct: 339 NNCSPDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQSGKLEI 398

Query: 528 AMEIFKQMKTCGIPPNAATYNIMID-CCSIIRCFKSA------------------SALVS 568
           A E+F++M + G+ P+  TY I++D  C   +  K+                   + ++ 
Sbjct: 399 AEELFQEMVSLGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMNLDIVMYTIIIE 458

Query: 569 MMVRDG----------------FYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPH 612
            M + G                  P  MTYT +I  L   G   EA  LL  +  +G   
Sbjct: 459 GMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNEP 518

Query: 613 DVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVF 656
           +   YNT+++     G +     +IE+M       D S+   V 
Sbjct: 519 NDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVI 562



 Score = 60.5 bits (145), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 62/282 (21%), Positives = 118/282 (41%), Gaps = 20/282 (7%)

Query: 90  FFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLG 149
           +  I+N   +S D    ++  R M+E+ +  +   Y  ++ +LC+ G ++ A +L   + 
Sbjct: 173 YNSIVNGICKSGDTSLALDLLRKMDERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEM- 231

Query: 150 ERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNL 209
           E  GI   L  YNS +G   K          L  M SR +  N +T+  L+ + V +  L
Sbjct: 232 ETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPNVITFNVLIDVFVKEGKL 291

Query: 210 SAVHEIWEDYI-KHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMV-----------ALA 257
              +E++++ I K  S +  +    +  +     L  A   L  MV              
Sbjct: 292 QEANELYKEMITKGISPNTITYNSLMDGYCMQNRLSEANNMLDLMVRNNCSPDIVTFTSL 351

Query: 258 MMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLML 317
           + G   + R  EG     +L   I    L    V   ++S ++    ++    +AE+L  
Sbjct: 352 IKGYCKVKRVDEGM----KLFRKISKRGLVANTV---TYSILVQGFCQSGKLEIAEELFQ 404

Query: 318 QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNL 359
           +M SLG+ P   TY   +  +  +  L   +E+ + +Q++ +
Sbjct: 405 EMVSLGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKM 446



 Score = 48.1 bits (113), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 92/461 (19%), Positives = 173/461 (37%), Gaps = 74/461 (16%)

Query: 128 MMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDL---M 184
           ++  LC    + EA  L+  + E  G  P +  YNS +    K       +L LDL   M
Sbjct: 141 LINGLCLESKVSEAVVLVARMVEN-GCQPNVVTYNSIVNGICKSG---DTSLALDLLRKM 196

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDY-IKHYSLSIFSLRKFVWSFTRLRDL 243
           D R V  +  TY+ ++        + A   ++++   K    S+ +    V    +    
Sbjct: 197 DERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSLVTYNSLVGGLCKAGKW 256

Query: 244 KSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIP--IPLNALPVMKVLRWSFSDVIH 301
               + L+ M                    +SR  IP  I  N L           DV  
Sbjct: 257 NDGVQLLKDM--------------------TSRKIIPNVITFNVLI----------DVFV 286

Query: 302 ACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKP 361
             G+ Q    A +L  +M + G+ P++ TY+  +        L     +L +M +NN  P
Sbjct: 287 KEGKLQE---ANELYKEMITKGISPNTITYNSLMDGYCMQNRLSEANNMLDLMVRNNCSP 343

Query: 362 QDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKPERAIKIF 418
              T  +L     K   +D    L  +IS+     N   +S  +       K E A ++F
Sbjct: 344 DIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQSGKLEIAEELF 403

Query: 419 AKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEG-NMFSQVDSAKRINAIEM---------- 466
            +M    + PD+ TY +L     + N   E+   +F  +  +K    I M          
Sbjct: 404 QEMVSLGVLPDVMTYGILLDGLCD-NGKLEKALEIFEDLQKSKMNLDIVMYTIIIEGMCK 462

Query: 467 ------------DMARNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPT 511
                        +    ++ + ++   ++  L  +G + E   L++   +        T
Sbjct: 463 GGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNEPNDCT 522

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID 552
           YNT++ + +   +   + ++ ++MK+CG   +A++  ++ID
Sbjct: 523 YNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVID 563



 Score = 46.2 bits (108), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 28/112 (25%), Positives = 59/112 (52%), Gaps = 1/112 (0%)

Query: 107 METWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLG 166
           +E +  +++ ++ L+   Y ++++ +CKGG +E+A NL   L  + G+ P +  Y   + 
Sbjct: 435 LEIFEDLQKSKMNLDIVMYTIIIEGMCKGGKVEDAWNLFCSLPCK-GVKPNVMTYTVMIS 493

Query: 167 ACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWED 218
              K  S+  AN+ L  M+      N+ TY  L++  +   +L+A  ++ E+
Sbjct: 494 GLCKKGSLSEANILLRKMEEDGNEPNDCTYNTLIRAHLRDGDLTASAKLIEE 545


>gi|297835244|ref|XP_002885504.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331344|gb|EFH61763.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 618

 Score = 89.4 bits (220), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 91/404 (22%), Positives = 173/404 (42%), Gaps = 26/404 (6%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           ++  V++   ++ N+ LA  L  +M+   ++ S   Y   I ++  D  L + + +   M
Sbjct: 211 TYGPVLNRMCKSGNTALALDLFRKMEERSIKASVVQYSIVIDSLCKDGNLDDALSLFNEM 270

Query: 355 QQNNLKPQ----DSTIATLSVECSKALELDLAEALLDQISRCTNPK--PFSAFLAACDTM 408
           +   +K       S I  L   C+     D A+ L + I R   P    FSA +      
Sbjct: 271 EMKGIKADVVAYSSIIGGL---CNDGRWDDGAKMLREMIGRNIIPNVVTFSALIDVFVKE 327

Query: 409 DKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMD 467
            K   A +++ +M  + + PD  TY  L   F   N   E   M   + S          
Sbjct: 328 GKLLEAKELYNEMVARGIAPDTITYSSLIDGFCKENRLGEANQMLDLMVSKG-------- 379

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCD--SKTPLG-TPTYNTVLHSLVEAQE 524
               NI    I + +  KA   +  +R     FC+  SK  +  T TYNT++    ++ +
Sbjct: 380 -CEPNIVTYSILINSYCKAKRVDNGMR----LFCEISSKGLVADTVTYNTLVQGFCQSGK 434

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
            + A E+F++M + G+PP+  TY I++D        + A  +   M +         Y  
Sbjct: 435 LNVAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELQKALEIFEKMQKSRMILGIGIYNI 494

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
           +I  + +    D+A +L   +S++G+  DVL YN ++   C+KG +   + +  +M ++ 
Sbjct: 495 IIHGMCNASKVDDAWSLFCSLSVKGVKPDVLTYNVMIGGLCKKGSLSEADMLFRKMKEDG 554

Query: 645 VQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLE 688
             P   T + +   ++      S++E ++ + MR    + ST++
Sbjct: 555 CAPSDCTYNILIRAHLGGSGVISSVELIEEMKMRGFAADASTIK 598



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 71/141 (50%), Gaps = 2/141 (1%)

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           ++ +  ++   +E    +   K+M   GI  N  T NIMI+C    R    A ++V   +
Sbjct: 72  FSKLFSAVARRKEYDLVLGFCKEMDLNGIEHNMYTMNIMINCFCRKRKLLFAFSVVGRAL 131

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLD-LVSLEGIPHDVLLYNTILKKACEKGRI 630
           + GF P T+T++ LI      G   EA+ L+D +V ++  P+ V+  NT++   C KGR+
Sbjct: 132 KFGFEPNTITFSTLINGFCLEGRVSEAVALVDRMVEMKYRPN-VVTVNTLINGLCLKGRV 190

Query: 631 DVIEFIIEQMHQNKVQPDPST 651
                +I++M +   + +  T
Sbjct: 191 TEALVLIDRMVKYGCEANEIT 211



 Score = 53.9 bits (128), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 64/316 (20%), Positives = 137/316 (43%), Gaps = 15/316 (4%)

Query: 54  ATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFH--ILNYCARSPDPLFVMETWR 111
            T   +++ LC   R   + +L++     +   A++  +  +LN   +S +    ++ +R
Sbjct: 175 VTVNTLINGLCLKGRVTEALVLIDR-MVKYGCEANEITYGPVLNRMCKSGNTALALDLFR 233

Query: 112 MMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKL 171
            MEE+ I  +   Y +++ +LCK G L++A +L   + E  GI   +  Y+S +G     
Sbjct: 234 KMEERSIKASVVQYSIVIDSLCKDGNLDDALSLFNEM-EMKGIKADVVAYSSIIGGLCND 292

Query: 172 HSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYSLSIFSL 230
                    L  M  R +  N VT++ L+ + V +  L    E++ + + +  +    + 
Sbjct: 293 GRWDDGAKMLREMIGRNIIPNVVTFSALIDVFVKEGKLLEAKELYNEMVARGIAPDTITY 352

Query: 231 RKFVWSFTRLRDLKSAYETLQHMVALA-----MMGKLYINRTSEGRL--RSSRLDIPIPL 283
              +  F +   L  A + L  MV+       +   + IN   + +      RL   I  
Sbjct: 353 SSLIDGFCKENRLGEANQMLDLMVSKGCEPNIVTYSILINSYCKAKRVDNGMRLFCEISS 412

Query: 284 NALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRG 343
             L    V   +++ ++    ++    +A++L  +M S G+ PS  TY   +  +  +  
Sbjct: 413 KGLVADTV---TYNTLVQGFCQSGKLNVAKELFQEMVSRGVPPSVVTYGILLDGLCDNGE 469

Query: 344 LRNGMEVLKIMQQNNL 359
           L+  +E+ + MQ++ +
Sbjct: 470 LQKALEIFEKMQKSRM 485



 Score = 47.0 bits (110), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 51/248 (20%), Positives = 99/248 (39%), Gaps = 16/248 (6%)

Query: 451 MFSQVDSAKRINAI-----EMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKT 505
           +FS V   K  + +     EMD+  N I+H+  +M  ++     +   R+L+  F     
Sbjct: 75  LFSAVARRKEYDLVLGFCKEMDL--NGIEHNMYTMNIMINCFCRK---RKLLFAFSVVGR 129

Query: 506 PL------GTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRC 559
            L       T T++T+++          A+ +  +M      PN  T N +I+   +   
Sbjct: 130 ALKFGFEPNTITFSTLINGFCLEGRVSEAVALVDRMVEMKYRPNVVTVNTLINGLCLKGR 189

Query: 560 FKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNT 619
              A  L+  MV+ G     +TY  ++  +   G+   AL+L   +    I   V+ Y+ 
Sbjct: 190 VTEALVLIDRMVKYGCEANEITYGPVLNRMCKSGNTALALDLFRKMEERSIKASVVQYSI 249

Query: 620 ILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRM 679
           ++   C+ G +D    +  +M    ++ D      +  G  N G  +   + L+ +  R 
Sbjct: 250 VIDSLCKDGNLDDALSLFNEMEMKGIKADVVAYSSIIGGLCNDGRWDDGAKMLREMIGRN 309

Query: 680 LCEEVSTL 687
           +   V T 
Sbjct: 310 IIPNVVTF 317



 Score = 42.4 bits (98), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 75/389 (19%), Positives = 160/389 (41%), Gaps = 21/389 (5%)

Query: 8   TRFQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCR-G 66
            ++ ++ DS CK   +  +  ++ N++E+        G+  + ++ ++   I+  LC  G
Sbjct: 245 VQYSIVIDSLCKDG-NLDDALSLFNEMEMK-------GIKADVVAYSS---IIGGLCNDG 293

Query: 67  ERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYL 126
                + +L  +   +       F  +++   +    L   E +  M  + I  +   Y 
Sbjct: 294 RWDDGAKMLREMIGRNIIPNVVTFSALIDVFVKEGKLLEAKELYNEMVARGIAPDTITYS 353

Query: 127 LMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDS 186
            ++   CK   L EA+ ++  +  + G  P +  Y+  + +  K   + +       + S
Sbjct: 354 SLIDGFCKENRLGEANQMLDLMVSK-GCEPNIVTYSILINSYCKAKRVDNGMRLFCEISS 412

Query: 187 RMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYSLSIFSLRKFVWSFTRLRDLKS 245
           + +  + VTY  L++       L+   E++++ + +    S+ +    +       +L+ 
Sbjct: 413 KGLVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELQK 472

Query: 246 AYETLQHMVALAMMGKLYI-NRTSEGRLRSSRLDIPIPL-NALPVMKVLRWSFSDVIHAC 303
           A E  + M    M+  + I N    G   +S++D    L  +L V  V     +  +   
Sbjct: 473 ALEIFEKMQKSRMILGIGIYNIIIHGMCNASKVDDAWSLFCSLSVKGVKPDVLTYNVMIG 532

Query: 304 GRTQNSGLAEQLML--QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKP 361
           G  +   L+E  ML  +M+  G  PS  TY+  IRA +   G+ + +E+++ M+      
Sbjct: 533 GLCKKGSLSEADMLFRKMKEDGCAPSDCTYNILIRAHLGGSGVISSVELIEEMKMRGFAA 592

Query: 362 QDSTIATLSVECSKALELDLAEALLDQIS 390
             STI  + V  S      L +  LD +S
Sbjct: 593 DASTIKMVVVMLSDG---RLDKTFLDMLS 618


>gi|221483021|gb|EEE21345.1| PPR repeat-containing protein, putative [Toxoplasma gondii GT1]
          Length = 1945

 Score = 89.4 bits (220), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 99/180 (55%), Gaps = 4/180 (2%)

Query: 472  NIQHSHISMKNLLKALGAEGMIRELIQYFCDSK----TPLGTPTYNTVLHSLVEAQESHR 527
             +Q + ++   +  AL + G + E ++ F + K     P  T  Y+T++    ++++  R
Sbjct: 1049 GLQPNAVAYGCMYDALVSNGRVVEALELFEEMKREGQVPPNTIMYSTIIKGFAQSKQLDR 1108

Query: 528  AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
            A++++ +M+  G+  N  T+N ++D C+ +     A+ L+  M+  G  P  +T++ +IK
Sbjct: 1109 ALKMYAEMQQNGVAINTVTFNSIVDACARVGAMDKAAMLLEDMLSQGIKPDLITFSTIIK 1168

Query: 588  ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
                +G+ ++AL+LL  +    I  D +LYN++L    + GR+ + E++ E+M + ++ P
Sbjct: 1169 GYCVHGEMNKALHLLKAMRERHIKPDGVLYNSLLDGCVKTGRVSLCEYLWEEMQREEIPP 1228



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 60/143 (41%), Gaps = 1/143 (0%)

Query: 539  GIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDG-FYPQTMTYTALIKILLDYGDFDE 597
            G+ PNA  Y  M D          A  L   M R+G   P T+ Y+ +IK        D 
Sbjct: 1049 GLQPNAVAYGCMYDALVSNGRVVEALELFEEMKREGQVPPNTIMYSTIIKGFAQSKQLDR 1108

Query: 598  ALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFS 657
            AL +   +   G+  + + +N+I+      G +D    ++E M    ++PD  T   +  
Sbjct: 1109 ALKMYAEMQQNGVAINTVTFNSIVDACARVGAMDKAAMLLEDMLSQGIKPDLITFSTIIK 1168

Query: 658  GYVNCGFHNSAMEALQVLSMRML 680
            GY   G  N A+  L+ +  R +
Sbjct: 1169 GYCVHGEMNKALHLLKAMRERHI 1191



 Score = 40.8 bits (94), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 68/334 (20%), Positives = 135/334 (40%), Gaps = 63/334 (18%)

Query: 321  SLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTI-ATLSVECSKALEL 379
            S GLQP++  Y     A+VS+  +   +E+ + M++    P ++ + +T+    +++ +L
Sbjct: 1047 SRGLQPNAVAYGCMYDALVSNGRVVEALELFEEMKREGQVPPNTIMYSTIIKGFAQSKQL 1106

Query: 380  DLA---EALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELL 435
            D A    A + Q     N   F++ + AC  +   ++A  +   M  Q ++PD+ T+  +
Sbjct: 1107 DRALKMYAEMQQNGVAINTVTFNSIVDACARVGAMDKAAMLLEDMLSQGIKPDLITFSTI 1166

Query: 436  ---FSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGM 492
               + + G +N                   A+ +  A   ++  HI    +L        
Sbjct: 1167 IKGYCVHGEMN------------------KALHLLKA---MRERHIKPDGVL-------- 1197

Query: 493  IRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID 552
                               YN++L   V+         ++++M+   IPP+  T  I+I 
Sbjct: 1198 -------------------YNSLLDGCVKTGRVSLCEYLWEEMQREEIPPSNFTLTILIK 1238

Query: 553  CCSIIRCFKSASALVSMMVRD-GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIP 611
                +   + A  LV  + R  GF      YT L+   +   ++  AL + D +   G+ 
Sbjct: 1239 MHGRLYQLQKAFDLVKELPRKYGFSINAHVYTCLMAACIVNREYYLALEVYDCMERSGVR 1298

Query: 612  HDVLLYNTILKKACEKGR-----IDVIEFIIEQM 640
             D     TI+   C KGR     ++++   ++QM
Sbjct: 1299 GDPKTLTTIV-GGCIKGRMIREAVNIVSRALDQM 1331


>gi|159464329|ref|XP_001690394.1| hypothetical protein CHLREDRAFT_114572 [Chlamydomonas reinhardtii]
 gi|158279894|gb|EDP05653.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 287

 Score = 89.4 bits (220), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 81/333 (24%), Positives = 142/333 (42%), Gaps = 51/333 (15%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           ++++ +I  CG  Q    A +L+ +M+S G+  + HTY   +   +    L    +V K 
Sbjct: 1   YTYTTMISQCGSHQQLRRALELVAEMRSRGIDCNVHTYSALMNVCIKANELDLAQDVYKQ 60

Query: 354 MQQNNLKPQDSTIATL-SVECSKALELD---LAEALLDQISRCTNPKPFSAFLAACDTMD 409
           M +    P   T   L  VE SK    +   LA AL+    +    + ++  ++AC+   
Sbjct: 61  MLEEGCSPNLVTYNILIDVEASKRKTTERRRLAVALVRSGIQ-AEVRTYNTVISACNKSG 119

Query: 410 KPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
           +PE+A+K++ KM    ++P   TY  L S +G             QV+ A       +D+
Sbjct: 120 QPEQALKVYEKMLAAGVKPSATTYTALISAYGKKG----------QVEKA-------LDI 162

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRA 528
            R+ I+                G  R +I             TY++++ +  +A     A
Sbjct: 163 FRDMIRR---------------GCERNVI-------------TYSSLISACEKAGRWEMA 194

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
           +E+F +M      PN  TYN +I  CS    ++ AS L   M   G  P ++TY  LI  
Sbjct: 195 LELFSKMHKENCKPNVVTYNSLIAACSHGGHWEKASELFEQMQTQGCKPDSITYCGLITA 254

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTIL 621
               G +  AL   + +  +G   D  ++N+++
Sbjct: 255 YERGGQWRRALKAFEQMQSQGCHPDAAVFNSLM 287



 Score = 69.3 bits (168), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 58/277 (20%), Positives = 121/277 (43%), Gaps = 11/277 (3%)

Query: 398 FSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVD 456
           ++  ++ C +  +  RA+++ A+MR + +  ++ TY  L ++    N      +++ Q+ 
Sbjct: 3   YTTMISQCGSHQQLRRALELVAEMRSRGIDCNVHTYSALMNVCIKANELDLAQDVYKQM- 61

Query: 457 SAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVL 516
                  +E   + N + ++ +      K    E   R L      S       TYNTV+
Sbjct: 62  -------LEEGCSPNLVTYNILIDVEASKRKTTER--RRLAVALVRSGIQAEVRTYNTVI 112

Query: 517 HSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFY 576
            +  ++ +  +A++++++M   G+ P+A TY  +I         + A  +   M+R G  
Sbjct: 113 SACNKSGQPEQALKVYEKMLAAGVKPSATTYTALISAYGKKGQVEKALDIFRDMIRRGCE 172

Query: 577 PQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFI 636
              +TY++LI      G ++ AL L   +  E    +V+ YN+++      G  +    +
Sbjct: 173 RNVITYSSLISACEKAGRWEMALELFSKMHKENCKPNVVTYNSLIAACSHGGHWEKASEL 232

Query: 637 IEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
            EQM     +PD  T   + + Y   G    A++A +
Sbjct: 233 FEQMQTQGCKPDSITYCGLITAYERGGQWRRALKAFE 269



 Score = 59.3 bits (142), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 77/172 (44%), Gaps = 1/172 (0%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TY T++      Q+  RA+E+  +M++ GI  N  TY+ +++ C        A  +   M
Sbjct: 2   TYTTMISQCGSHQQLRRALELVAEMRSRGIDCNVHTYSALMNVCIKANELDLAQDVYKQM 61

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           + +G  P  +TY  LI +        E   L   +   GI  +V  YNT++    + G+ 
Sbjct: 62  LEEGCSPNLVTYNILIDVEASKRKTTERRRLAVALVRSGIQAEVRTYNTVISACNKSGQP 121

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCE 682
           +    + E+M    V+P  +T   + S Y   G    A++  + + +R  CE
Sbjct: 122 EQALKVYEKMLAAGVKPSATTYTALISAYGKKGQVEKALDIFRDM-IRRGCE 172


>gi|302755288|ref|XP_002961068.1| hypothetical protein SELMODRAFT_75649 [Selaginella moellendorffii]
 gi|300172007|gb|EFJ38607.1| hypothetical protein SELMODRAFT_75649 [Selaginella moellendorffii]
          Length = 461

 Score = 89.4 bits (220), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 86/356 (24%), Positives = 153/356 (42%), Gaps = 26/356 (7%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           ++S ++ A    + +  A +L+ QM+S+GL+    TY   I ++     +     +++ M
Sbjct: 89  TYSILVAALTAAKRNNDALELLEQMESVGLEADKDTYSLIIHSLCKSGMVDKAKVLVERM 148

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQI--SRCTNPKPFSAFLAACDTMDKPE 412
              N  P       +  E SK   +D A  +  +     CT+   +++ +       + +
Sbjct: 149 ISRNCVPDARIYDPVIEELSKTGRVDEAVEIAKEADAKHCTSVVTYNSLVLGFLKARRLK 208

Query: 413 RAIKIFAKM-RQKLRPDIRTYELLF---SLFGNVNAPYE---EGNMFSQVDSAKRINAIE 465
           R IK+F +M R    PDI TY +LF   S  G     Y+     N    +      N++ 
Sbjct: 209 RGIKVFTRMARTGPSPDIYTYNILFEGLSRHGLWRFAYKLLPRMNQDGVLPDVVTFNSLI 268

Query: 466 MDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQES 525
             +  +N  H  +++            I+E++   CD        TY  +L  L     +
Sbjct: 269 NGLVEDNRYHRAVTL------------IQEMVSRGCDP----NAITYTILLKWLARNART 312

Query: 526 HRAMEIFKQMKTCGIPPNAATYN-IMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
              +E+F+++    + PN  TYN +M   C   R  ++      M+  D   P  +TY A
Sbjct: 313 DECVELFQRLLDRKLAPNVYTYNTVMSALCKAGRLDQAHRLFGVMLASDCTPPNAITYRA 372

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQM 640
           LI  L    + + A+ LLD ++  G   DV  Y TI+   C++GRID    ++E+M
Sbjct: 373 LIHGLCLKMELERAVLLLDAMAKRGCAPDVACYGTIVAAFCKQGRIDEAFELLERM 428



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 84/346 (24%), Positives = 155/346 (44%), Gaps = 25/346 (7%)

Query: 340 SDRG-LRNGMEVLKIMQQNN--LKPQDSTIATLSVECSKALELDLAEALL----DQISRC 392
           S++G LR  +E+LK M +N   L  QD     L   C KA  +D A   L    +  S  
Sbjct: 27  SEQGNLRATIELLKDMAENGSTLSIQDLN-GCLRGLC-KAGNVDGALEFLREAKNSFSLR 84

Query: 393 TNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNM 451
            +   +S  +AA     +   A+++  +M    L  D  TY L+      +++  + G  
Sbjct: 85  ASVSTYSILVAALTAAKRNNDALELLEQMESVGLEADKDTYSLI------IHSLCKSG-- 136

Query: 452 FSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYF--CDSKTPLGT 509
              VD AK +  +E  ++RN +  + I    +++ L   G + E ++     D+K     
Sbjct: 137 --MVDKAKVL--VERMISRNCVPDARI-YDPVIEELSKTGRVDEAVEIAKEADAKHCTSV 191

Query: 510 PTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSM 569
            TYN+++   ++A+   R +++F +M   G  P+  TYNI+ +  S    ++ A  L+  
Sbjct: 192 VTYNSLVLGFLKARRLKRGIKVFTRMARTGPSPDIYTYNILFEGLSRHGLWRFAYKLLPR 251

Query: 570 MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
           M +DG  P  +T+ +LI  L++   +  A+ L+  +   G   + + Y  +LK      R
Sbjct: 252 MNQDGVLPDVVTFNSLINGLVEDNRYHRAVTLIQEMVSRGCDPNAITYTILLKWLARNAR 311

Query: 630 IDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
            D    + +++   K+ P+  T + V S     G  + A     V+
Sbjct: 312 TDECVELFQRLLDRKLAPNVYTYNTVMSALCKAGRLDQAHRLFGVM 357



 Score = 45.4 bits (106), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 72/177 (40%), Gaps = 5/177 (2%)

Query: 512 YNTVLHSLVEAQESHRAMEIFKQM--KTCGIPPNAATYNIMIDCCSIIRCFKSASALVSM 569
           Y+ V+  L +      A+EI K+   K C    +  TYN ++      R  K    + + 
Sbjct: 160 YDPVIEELSKTGRVDEAVEIAKEADAKHC---TSVVTYNSLVLGFLKARRLKRGIKVFTR 216

Query: 570 MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
           M R G  P   TY  L + L  +G +  A  LL  ++ +G+  DV+ +N+++    E  R
Sbjct: 217 MARTGPSPDIYTYNILFEGLSRHGLWRFAYKLLPRMNQDGVLPDVVTFNSLINGLVEDNR 276

Query: 630 IDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
                 +I++M      P+  T   +          +  +E  Q L  R L   V T
Sbjct: 277 YHRAVTLIQEMVSRGCDPNAITYTILLKWLARNARTDECVELFQRLLDRKLAPNVYT 333


>gi|221503954|gb|EEE29631.1| PPR repeat-containing protein, putative [Toxoplasma gondii VEG]
          Length = 1945

 Score = 89.4 bits (220), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 99/180 (55%), Gaps = 4/180 (2%)

Query: 472  NIQHSHISMKNLLKALGAEGMIRELIQYFCDSK----TPLGTPTYNTVLHSLVEAQESHR 527
             +Q + ++   +  AL + G + E ++ F + K     P  T  Y+T++    ++++  R
Sbjct: 1049 GLQPNAVAYGCMYDALVSNGRVVEALELFEEMKREGQVPPNTIMYSTIIKGFAQSKQLDR 1108

Query: 528  AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
            A++++ +M+  G+  N  T+N ++D C+ +     A+ L+  M+  G  P  +T++ +IK
Sbjct: 1109 ALKMYAEMQQNGVAINTVTFNSIVDACARVGAMDKAAMLLEDMLSQGIKPDLITFSTIIK 1168

Query: 588  ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
                +G+ ++AL+LL  +    I  D +LYN++L    + GR+ + E++ E+M + ++ P
Sbjct: 1169 GYCVHGEMNKALHLLKAMRERHIKPDGVLYNSLLDGCVKTGRVSLCEYLWEEMQREEIPP 1228



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 60/143 (41%), Gaps = 1/143 (0%)

Query: 539  GIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDG-FYPQTMTYTALIKILLDYGDFDE 597
            G+ PNA  Y  M D          A  L   M R+G   P T+ Y+ +IK        D 
Sbjct: 1049 GLQPNAVAYGCMYDALVSNGRVVEALELFEEMKREGQVPPNTIMYSTIIKGFAQSKQLDR 1108

Query: 598  ALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFS 657
            AL +   +   G+  + + +N+I+      G +D    ++E M    ++PD  T   +  
Sbjct: 1109 ALKMYAEMQQNGVAINTVTFNSIVDACARVGAMDKAAMLLEDMLSQGIKPDLITFSTIIK 1168

Query: 658  GYVNCGFHNSAMEALQVLSMRML 680
            GY   G  N A+  L+ +  R +
Sbjct: 1169 GYCVHGEMNKALHLLKAMRERHI 1191



 Score = 40.4 bits (93), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 68/334 (20%), Positives = 135/334 (40%), Gaps = 63/334 (18%)

Query: 321  SLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTI-ATLSVECSKALEL 379
            S GLQP++  Y     A+VS+  +   +E+ + M++    P ++ + +T+    +++ +L
Sbjct: 1047 SRGLQPNAVAYGCMYDALVSNGRVVEALELFEEMKREGQVPPNTIMYSTIIKGFAQSKQL 1106

Query: 380  DLA---EALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELL 435
            D A    A + Q     N   F++ + AC  +   ++A  +   M  Q ++PD+ T+  +
Sbjct: 1107 DRALKMYAEMQQNGVAINTVTFNSIVDACARVGAMDKAAMLLEDMLSQGIKPDLITFSTI 1166

Query: 436  ---FSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGM 492
               + + G +N                   A+ +  A   ++  HI    +L        
Sbjct: 1167 IKGYCVHGEMN------------------KALHLLKA---MRERHIKPDGVL-------- 1197

Query: 493  IRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID 552
                               YN++L   V+         ++++M+   IPP+  T  I+I 
Sbjct: 1198 -------------------YNSLLDGCVKTGRVSLCEYLWEEMQREEIPPSNFTLTILIK 1238

Query: 553  CCSIIRCFKSASALVSMMVRD-GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIP 611
                +   + A  LV  + R  GF      YT L+   +   ++  AL + D +   G+ 
Sbjct: 1239 MHGRLYQLQKAFDLVKELPRKYGFSINAHVYTCLMAACIVNREYYLALEVYDCMERSGVR 1298

Query: 612  HDVLLYNTILKKACEKGR-----IDVIEFIIEQM 640
             D     TI+   C KGR     ++++   ++QM
Sbjct: 1299 GDPKTLTTIV-GGCIKGRMIREAVNIVSRALDQM 1331


>gi|147834641|emb|CAN60904.1| hypothetical protein VITISV_016343 [Vitis vinifera]
          Length = 580

 Score = 89.4 bits (220), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 78/353 (22%), Positives = 146/353 (41%), Gaps = 51/353 (14%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A + +  M+ LG +P+  +Y+  I    S   +     +L  M+   ++P   T  +L  
Sbjct: 192 AREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLIS 251

Query: 372 ECSKALELDLAEALLD---QISRCTNPKPFSAFLAA-CDTMDKPERAIKIFAKMRQK-LR 426
              K   L+ A  L D   +I    N   ++  +   C+  D  ERA     +M +K + 
Sbjct: 252 GMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDL-ERAFSYRDEMVKKGIM 310

Query: 427 PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKA 486
           P + TY LL      V+A + EG M    D                          ++K 
Sbjct: 311 PSVSTYNLL------VHALFMEGRMGEADD--------------------------MIKE 338

Query: 487 LGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAAT 546
           +  +G+I + I             TYN +++       + RA ++  +M + GI P   T
Sbjct: 339 MRKKGIIPDAI-------------TYNILINGYSRCGNAKRAFDLHNEMLSKGIEPTHVT 385

Query: 547 YNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVS 606
           Y  +I   S     K A  L   ++  G  P  + + A+I      G+ + A  LL  + 
Sbjct: 386 YTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMIDGHCANGNVERAFMLLKEMD 445

Query: 607 LEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
            + +P D + +NT+++  C +G+++    ++++M    ++PD  + + + SGY
Sbjct: 446 RKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKXRGIKPDHISYNTLISGY 498



 Score = 87.0 bits (214), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 86/379 (22%), Positives = 158/379 (41%), Gaps = 30/379 (7%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           S++ +IH      N   A +++  M+  G++P S+TY   I  +  +  L     +   M
Sbjct: 210 SYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKM 269

Query: 355 QQNNLKPQDSTIATL-SVECSKALELDLAEALLDQ-ISRCTNPK--PFSAFLAACDTMDK 410
            +  L P   T  TL    C+K  +L+ A +  D+ + +   P    ++  + A     +
Sbjct: 270 VEIGLVPNAVTYNTLIDGYCNKG-DLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGR 328

Query: 411 PERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
              A  +  +MR+K + PD  TY +L              N +S+  +AKR   +  +M 
Sbjct: 329 MGEADDMIKEMRKKGIIPDAITYNILI-------------NGYSRCGNAKRAFDLHNEML 375

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESH 526
              I+ +H++  +L+  L     ++E   L +   D         +N ++          
Sbjct: 376 SKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMIDGHCANGNVE 435

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRC----FKSASALVSMMVRDGFYPQTMTY 582
           RA  + K+M    +PP+  T+N ++      RC     + A  L+  M   G  P  ++Y
Sbjct: 436 RAFMLLKEMDRKSVPPDEVTFNTLMQG----RCREGKVEEARMLLDEMKXRGIKPDHISY 491

Query: 583 TALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642
             LI      GD  +A  + D +   G    +L YN ++K  C+    D+ E ++++M  
Sbjct: 492 NTLISGYGRRGDIKDAFXVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVN 551

Query: 643 NKVQPDPSTCHFVFSGYVN 661
             + PD ST   +  G  N
Sbjct: 552 KGISPDDSTYLSLIEGMGN 570



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 72/275 (26%), Positives = 123/275 (44%), Gaps = 22/275 (8%)

Query: 412 ERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           E A +I   MR K + PD  TY  L S         E   +F   D    I  +   +  
Sbjct: 225 EGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLF---DKMVEIGLVPNAVTY 281

Query: 471 NNIQHSHISMKNLLKALG-AEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAM 529
           N +   + +  +L +A    + M+++ I             TYN ++H+L        A 
Sbjct: 282 NTLIDGYCNKGDLERAFSYRDEMVKKGIMP--------SVSTYNLLVHALFMEGRMGEAD 333

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
           ++ K+M+  GI P+A TYNI+I+  S     K A  L + M+  G  P  +TYT+LI +L
Sbjct: 334 DMIKEMRKKGIIPDAITYNILINGYSRCGNAKRAFDLHNEMLSKGIEPTHVTYTSLIYVL 393

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649
                  EA +L + +  +G+  DV+++N ++   C  G ++    ++++M +  V PD 
Sbjct: 394 SRRNRMKEADDLFEKILDQGVSPDVIMFNAMIDGHCANGNVERAFMLLKEMDRKSVPPDE 453

Query: 650 STCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEV 684
            T + +  G    G         +V   RML +E+
Sbjct: 454 VTFNTLMQGRCREG---------KVEEARMLLDEM 479



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/104 (25%), Positives = 51/104 (49%)

Query: 560 FKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNT 619
            K A   +  M   GF P  ++Y  +I      G+ + A  +LD + ++GI  D   Y +
Sbjct: 189 LKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGS 248

Query: 620 ILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
           ++   C++GR++    + ++M +  + P+  T + +  GY N G
Sbjct: 249 LISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKG 292



 Score = 45.8 bits (107), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 56/262 (21%), Positives = 116/262 (44%), Gaps = 6/262 (2%)

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
           M +K I  +   Y L++ AL   G + EA ++I  +  + GI P    YN  +   ++  
Sbjct: 304 MVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEM-RKKGIIPDAITYNILINGYSRCG 362

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYSLSIFSLR 231
           +   A    + M S+ +    VTYT L+ +   +  +    +++E  + +  S  +    
Sbjct: 363 NAKRAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFN 422

Query: 232 KFVWSFTRLRDLKSAYETLQHMVALAM-MGKLYINRTSEGRLRSSRL-DIPIPLNALPV- 288
             +       +++ A+  L+ M   ++   ++  N   +GR R  ++ +  + L+ +   
Sbjct: 423 AMIDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKXR 482

Query: 289 -MKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNG 347
            +K    S++ +I   GR  +   A  +  +M S+G  P+  TY+  I+ +  ++     
Sbjct: 483 GIKPDHISYNTLISGYGRRGDIKDAFXVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLA 542

Query: 348 MEVLKIMQQNNLKPQDSTIATL 369
            E+LK M    + P DST  +L
Sbjct: 543 EELLKEMVNKGISPDDSTYLSL 564


>gi|237840063|ref|XP_002369329.1| PPR repeat-containing protein [Toxoplasma gondii ME49]
 gi|211966993|gb|EEB02189.1| PPR repeat-containing protein [Toxoplasma gondii ME49]
          Length = 1945

 Score = 89.4 bits (220), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 99/180 (55%), Gaps = 4/180 (2%)

Query: 472  NIQHSHISMKNLLKALGAEGMIRELIQYFCDSK----TPLGTPTYNTVLHSLVEAQESHR 527
             +Q + ++   +  AL + G + E ++ F + K     P  T  Y+T++    ++++  R
Sbjct: 1049 GLQPNAVAYGCMYDALVSNGRVVEALELFEEMKREGQVPPNTIMYSTIIKGFAQSKQLDR 1108

Query: 528  AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
            A++++ +M+  G+  N  T+N ++D C+ +     A+ L+  M+  G  P  +T++ +IK
Sbjct: 1109 ALKMYAEMQQNGVAINTVTFNSIVDACARVGAMDKAAMLLEDMLSQGIKPDLITFSTIIK 1168

Query: 588  ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
                +G+ ++AL+LL  +    I  D +LYN++L    + GR+ + E++ E+M + ++ P
Sbjct: 1169 GYCVHGEMNKALHLLKAMRERHIKPDGVLYNSLLDGCVKTGRVSLCEYLWEEMQREEIPP 1228



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 60/143 (41%), Gaps = 1/143 (0%)

Query: 539  GIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDG-FYPQTMTYTALIKILLDYGDFDE 597
            G+ PNA  Y  M D          A  L   M R+G   P T+ Y+ +IK        D 
Sbjct: 1049 GLQPNAVAYGCMYDALVSNGRVVEALELFEEMKREGQVPPNTIMYSTIIKGFAQSKQLDR 1108

Query: 598  ALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFS 657
            AL +   +   G+  + + +N+I+      G +D    ++E M    ++PD  T   +  
Sbjct: 1109 ALKMYAEMQQNGVAINTVTFNSIVDACARVGAMDKAAMLLEDMLSQGIKPDLITFSTIIK 1168

Query: 658  GYVNCGFHNSAMEALQVLSMRML 680
            GY   G  N A+  L+ +  R +
Sbjct: 1169 GYCVHGEMNKALHLLKAMRERHI 1191



 Score = 40.8 bits (94), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 68/334 (20%), Positives = 135/334 (40%), Gaps = 63/334 (18%)

Query: 321  SLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTI-ATLSVECSKALEL 379
            S GLQP++  Y     A+VS+  +   +E+ + M++    P ++ + +T+    +++ +L
Sbjct: 1047 SRGLQPNAVAYGCMYDALVSNGRVVEALELFEEMKREGQVPPNTIMYSTIIKGFAQSKQL 1106

Query: 380  DLA---EALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELL 435
            D A    A + Q     N   F++ + AC  +   ++A  +   M  Q ++PD+ T+  +
Sbjct: 1107 DRALKMYAEMQQNGVAINTVTFNSIVDACARVGAMDKAAMLLEDMLSQGIKPDLITFSTI 1166

Query: 436  ---FSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGM 492
               + + G +N                   A+ +  A   ++  HI    +L        
Sbjct: 1167 IKGYCVHGEMN------------------KALHLLKA---MRERHIKPDGVL-------- 1197

Query: 493  IRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID 552
                               YN++L   V+         ++++M+   IPP+  T  I+I 
Sbjct: 1198 -------------------YNSLLDGCVKTGRVSLCEYLWEEMQREEIPPSNFTLTILIK 1238

Query: 553  CCSIIRCFKSASALVSMMVRD-GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIP 611
                +   + A  LV  + R  GF      YT L+   +   ++  AL + D +   G+ 
Sbjct: 1239 MHGRLYQLQKAFDLVKELPRKYGFSINAHVYTCLMAACIVNREYYLALEVYDCMERSGVR 1298

Query: 612  HDVLLYNTILKKACEKGR-----IDVIEFIIEQM 640
             D     TI+   C KGR     ++++   ++QM
Sbjct: 1299 GDPKTLTTIV-GGCIKGRMIREAVNIVSRALDQM 1331


>gi|356544698|ref|XP_003540784.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Glycine max]
          Length = 495

 Score = 89.4 bits (220), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 82/368 (22%), Positives = 147/368 (39%), Gaps = 49/368 (13%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           SF   +    R ++   A  L+ +M+SL L PS  T      AI+++R   NG       
Sbjct: 106 SFDHAVDIAARMRDFNSAWALVGRMRSLRLGPSPKTL-----AILAERYASNG------- 153

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERA 414
                KP  +    LS          +AE  + Q     +   F+  L       + E A
Sbjct: 154 -----KPHRAVRTFLS----------MAEHGIRQ-----DLHSFNTLLDILCKSKRVETA 193

Query: 415 IKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQ 474
             +   +  + RPD  TY +L              N +  +        +  +M +  I+
Sbjct: 194 HSLLKTLTSRFRPDTVTYNIL-------------ANGYCLIKRTPMALRVLKEMVQRGIE 240

Query: 475 HSHISMKNLLKALGAEGMIRELIQYFCD---SKTPLGTPTYNTVLHSLVEAQESHRAMEI 531
            + ++   +LK       I+E  +++ +    K  +   TY TV+H    A +  +A  +
Sbjct: 241 PTMVTYNTMLKGYFRSNQIKEAWEFYLEMKKRKCEIDVVTYTTVIHGFGVAGDVKKAKRV 300

Query: 532 FKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGF-YPQTMTYTALIKILL 590
           F +M   G+ PN ATYN +I         ++A  +   M R+G   P  +TY  +I+ L 
Sbjct: 301 FHEMVKEGVVPNVATYNALIQVLCKKDSVENAVVVFEEMAREGVCVPNVVTYNVVIRGLC 360

Query: 591 DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650
             GD + AL  ++ +   G+   V  YN +++  C+ G ++    +  +M      P+  
Sbjct: 361 HVGDMERALGFMERMGEHGLRACVQTYNVVIRYFCDAGEVEKALEVFGKMGDGSCLPNLD 420

Query: 651 TCHFVFSG 658
           T + + S 
Sbjct: 421 TYNVLISA 428



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/284 (20%), Positives = 123/284 (43%), Gaps = 19/284 (6%)

Query: 394 NPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMF 452
           +PK  +       +  KP RA++ F  M +  +R D+ ++  L  +           ++ 
Sbjct: 138 SPKTLAILAERYASNGKPHRAVRTFLSMAEHGIRQDLHSFNTLLDILCKSKRVETAHSLL 197

Query: 453 SQVDSAKRINAIEMDMARNN---IQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGT 509
             + S  R + +  ++  N    I+ + ++++ +LK +   G+   ++            
Sbjct: 198 KTLTSRFRPDTVTYNILANGYCLIKRTPMALR-VLKEMVQRGIEPTMV------------ 244

Query: 510 PTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSM 569
            TYNT+L     + +   A E + +MK      +  TY  +I    +    K A  +   
Sbjct: 245 -TYNTMLKGYFRSNQIKEAWEFYLEMKKRKCEIDVVTYTTVIHGFGVAGDVKKAKRVFHE 303

Query: 570 MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGI-PHDVLLYNTILKKACEKG 628
           MV++G  P   TY ALI++L      + A+ + + ++ EG+   +V+ YN +++  C  G
Sbjct: 304 MVKEGVVPNVATYNALIQVLCKKDSVENAVVVFEEMAREGVCVPNVVTYNVVIRGLCHVG 363

Query: 629 RIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEAL 672
            ++     +E+M ++ ++    T + V   + + G    A+E  
Sbjct: 364 DMERALGFMERMGEHGLRACVQTYNVVIRYFCDAGEVEKALEVF 407


>gi|226528493|ref|NP_001147073.1| ATP binding protein [Zea mays]
 gi|195607078|gb|ACG25369.1| ATP binding protein [Zea mays]
          Length = 655

 Score = 89.4 bits (220), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 95/370 (25%), Positives = 158/370 (42%), Gaps = 22/370 (5%)

Query: 314 QLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVEC 373
           +++ QM   G  P    Y   I  I  +  L+   E+L  M    LKP      TL    
Sbjct: 283 EVLAQMAEHGCTPDIRMYATIIDGICKEGHLKVAHEILNRMPSYGLKPNVVCYNTLLKGL 342

Query: 374 SKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDK---PERAIKIFAKM-RQKLRPDI 429
             A   +  E LL ++     P     F    D   +    +R I++  +M      PD+
Sbjct: 343 CSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLVHGCMPDV 402

Query: 430 RTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKA--- 486
            TY  +      +N   +EG +   V   K + A       N I ++ I +K L  A   
Sbjct: 403 ITYTTV------INGFCKEGLIDEAVMLLKSMTAC--GCKPNTISYT-IVLKGLCSAERW 453

Query: 487 LGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAAT 546
           + AE ++ ++IQ  C    PL   T+NT+++ L +     +A+E+ KQM   G  P+  +
Sbjct: 454 VDAEDLMSQMIQQGC----PLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLIS 509

Query: 547 YNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVS 606
           Y+ +ID          A  L+++MV  G  P T+ Y+++   L   G  ++ + + D + 
Sbjct: 510 YSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQ 569

Query: 607 LEGIPHDVLLYNTILKKACEKGRID-VIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFH 665
              I  D +LYN ++   C++G  +  IEF +  M  +   P+ ST   +  G  + GF 
Sbjct: 570 DTTIRSDAVLYNAVISSLCKRGETERAIEF-LAYMVSSGCVPNESTYTILIRGLASEGFV 628

Query: 666 NSAMEALQVL 675
             A E L  L
Sbjct: 629 KEAQEMLTEL 638



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 86/387 (22%), Positives = 161/387 (41%), Gaps = 24/387 (6%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           S++ V+      +  G  ++LM +M  +   P+  T++  I  +  +       EVL  M
Sbjct: 229 SYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQM 288

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDK 410
            ++   P     AT+     K   L +A  +L+++      KP    ++  L    + ++
Sbjct: 289 AEHGCTPDIRMYATIIDGICKEGHLKVAHEILNRMPS-YGLKPNVVCYNTLLKGLCSAER 347

Query: 411 PERAIKIFAKMRQKLRP-DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
            E   ++ A+M  K  P D  T+ +L              + F Q     R+  +   M 
Sbjct: 348 WEETEELLAEMFDKDCPLDDVTFNILV-------------DFFCQNGLVDRVIELLEQML 394

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLG----TPTYNTVLHSLVEAQES 525
            +      I+   ++     EG+I E +     S T  G    T +Y  VL  L  A+  
Sbjct: 395 VHGCMPDVITYTTVINGFCKEGLIDEAVMLL-KSMTACGCKPNTISYTIVLKGLCSAERW 453

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
             A ++  QM   G P N  T+N +I+        + A  L+  M+ +G  P  ++Y+ +
Sbjct: 454 VDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTV 513

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           I  L   G  DEAL LL+++  +G+  + ++Y++I      +GRI+ +  + + +    +
Sbjct: 514 IDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQDTTI 573

Query: 646 QPDPSTCHFVFSGYVNCGFHNSAMEAL 672
           + D    + V S     G    A+E L
Sbjct: 574 RSDAVLYNAVISSLCKRGETERAIEFL 600



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 118/268 (44%), Gaps = 17/268 (6%)

Query: 412 ERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           ER  ++ A+M +    PDIR Y  +      ++   +EG++       K  + I   M  
Sbjct: 279 ERVHEVLAQMAEHGCTPDIRMYATI------IDGICKEGHL-------KVAHEILNRMPS 325

Query: 471 NNIQHSHISMKNLLKALGAEGM---IRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHR 527
             ++ + +    LLK L +        EL+    D   PL   T+N ++    +     R
Sbjct: 326 YGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDR 385

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
            +E+ +QM   G  P+  TY  +I+          A  L+  M   G  P T++YT ++K
Sbjct: 386 VIELLEQMLVHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLK 445

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
            L     + +A +L+  +  +G P + + +NT++   C+KG ++    +++QM  N   P
Sbjct: 446 GLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSP 505

Query: 648 DPSTCHFVFSGYVNCGFHNSAMEALQVL 675
           D  +   V  G    G  + A+E L V+
Sbjct: 506 DLISYSTVIDGLGKAGKTDEALELLNVM 533



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 77/182 (42%), Gaps = 4/182 (2%)

Query: 492 MIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI 551
           ++R+L  + C+        +YN VL  L  A+      E+ ++M     PPN  T+N +I
Sbjct: 214 LLRDLPSFGCEPDVV----SYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLI 269

Query: 552 DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIP 611
                   F+    +++ M   G  P    Y  +I  +   G    A  +L+ +   G+ 
Sbjct: 270 SYLCRNGLFERVHEVLAQMAEHGCTPDIRMYATIIDGICKEGHLKVAHEILNRMPSYGLK 329

Query: 612 HDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEA 671
            +V+ YNT+LK  C   R +  E ++ +M       D  T + +   +   G  +  +E 
Sbjct: 330 PNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIEL 389

Query: 672 LQ 673
           L+
Sbjct: 390 LE 391



 Score = 56.2 bits (134), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 31/136 (22%), Positives = 66/136 (48%)

Query: 513 NTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVR 572
           N VL+++ +     +A+ + + + + G  P+  +YN ++    + + +     L+  MVR
Sbjct: 196 NLVLNAICDQGSVDKALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVR 255

Query: 573 DGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDV 632
               P  +T+  LI  L   G F+    +L  ++  G   D+ +Y TI+   C++G + V
Sbjct: 256 MACPPNIVTFNTLISYLCRNGLFERVHEVLAQMAEHGCTPDIRMYATIIDGICKEGHLKV 315

Query: 633 IEFIIEQMHQNKVQPD 648
              I+ +M    ++P+
Sbjct: 316 AHEILNRMPSYGLKPN 331



 Score = 45.8 bits (107), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 71/169 (42%), Gaps = 2/169 (1%)

Query: 505 TPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSAS 564
            P    TY  V+ +L        A+ +  +M   G  P    Y+++++       F+SA 
Sbjct: 118 VPPNAYTYFPVVRALCARGRIADALAVLDEMPRRGCAPIPPMYHVILEAACRGGGFRSAV 177

Query: 565 ALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL-DLVSLEGIPHDVLLYNTILKK 623
            ++  +   G          ++  + D G  D+AL+LL DL S  G   DV+ YN +LK 
Sbjct: 178 RVLEDLHARGCALDVGNCNLVLNAICDQGSVDKALHLLRDLPSF-GCEPDVVSYNAVLKG 236

Query: 624 ACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEAL 672
            C   R   ++ ++E+M +    P+  T + + S     G      E L
Sbjct: 237 LCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVL 285



 Score = 41.2 bits (95), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 43/99 (43%)

Query: 577 PQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFI 636
           P   TY  +++ L   G   +AL +LD +   G      +Y+ IL+ AC  G       +
Sbjct: 120 PNAYTYFPVVRALCARGRIADALAVLDEMPRRGCAPIPPMYHVILEAACRGGGFRSAVRV 179

Query: 637 IEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
           +E +H      D   C+ V +   + G  + A+  L+ L
Sbjct: 180 LEDLHARGCALDVGNCNLVLNAICDQGSVDKALHLLRDL 218



 Score = 39.7 bits (91), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 76/370 (20%), Positives = 146/370 (39%), Gaps = 38/370 (10%)

Query: 90  FFHILNYCARSPDPLF--VMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYF 147
           F  +++Y  R  + LF  V E    M E     + + Y  ++  +CK G+L+ A  ++  
Sbjct: 265 FNTLISYLCR--NGLFERVHEVLAQMAEHGCTPDIRMYATIIDGICKEGHLKVAHEILNR 322

Query: 148 LGERYGIYPILPVYNSFL-GACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQ 206
           +   YG+ P +  YN+ L G C+         L  ++ D +    ++VT+  L+      
Sbjct: 323 M-PSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFD-KDCPLDDVTFNILVDFFCQN 380

Query: 207 KNLSAVHEIWEDYIKHYSL-SIFSLRKFVWSFTRLRDLKSAYETLQHMVA---------- 255
             +  V E+ E  + H  +  + +    +  F +   +  A   L+ M A          
Sbjct: 381 GLVDRVIELLEQMLVHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISY 440

Query: 256 -LAMMGKLYINRTSEGR-LRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAE 313
            + + G     R  +   L S  +    PLN +        +F+ +I+   +    GL E
Sbjct: 441 TIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPI--------TFNTLINFLCK---KGLVE 489

Query: 314 Q---LMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLS 370
           Q   L+ QM   G  P   +Y   I  +         +E+L +M    + P     ++++
Sbjct: 490 QAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIA 549

Query: 371 VECSKALELDLAEALLDQISRCT---NPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLR 426
              S+   ++    + D I   T   +   ++A +++     + ERAI+  A M      
Sbjct: 550 SALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCV 609

Query: 427 PDIRTYELLF 436
           P+  TY +L 
Sbjct: 610 PNESTYTILI 619


>gi|255577248|ref|XP_002529506.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531022|gb|EEF32875.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 808

 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 88/386 (22%), Positives = 157/386 (40%), Gaps = 24/386 (6%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ +I+A GR      A  +M  M    + PS  TY+  I A  S    R  ++V K M
Sbjct: 180 TYNALINAHGRAGQWRWAMNIMEDMLREAIPPSRSTYNNLINACGSSGNWREALKVSKQM 239

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSA----FLAACDTMDK 410
            +N + P   T   +        +   A +   ++ + TN +P +      +     + +
Sbjct: 240 TENGVGPDLVTHNIVLSAYKTGAQYSKALSYF-ELMKGTNIRPDTTTRNIVIYCLVKLGQ 298

Query: 411 PERAIKIFAKMRQK---LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMD 467
            E+AI IF  MR+K    RPDI T+  +  L+          ++  QV++ K   A+   
Sbjct: 299 CEKAIDIFNSMREKRAECRPDIVTFTSIIHLY----------SLSGQVENCK---AVFST 345

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQE 524
           M    +  + +S   L+ A    GM  E +  F   K     P   +Y ++L S   +++
Sbjct: 346 MLAEGLTPTIVSYNALIGAYAFHGMSEEALSVFKKIKASGLLPDVVSYTSLLSSYGRSKQ 405

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
             +A E+F  MK   + PN  ++N +ID          A  ++  M +DG +P  +T   
Sbjct: 406 PKKAREMFNMMKKAKLKPNVVSFNALIDAYGSNGLLADAVKVLREMEQDGIHPNIVTICT 465

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
           L+      G       +L    + GI  + +  N+ +      G  +    +   M + K
Sbjct: 466 LLAACGRCGQKVNIDAVLSAAKMRGIKLNTVACNSAIGSYMNVGEYEKAVALYNSMRKMK 525

Query: 645 VQPDPSTCHFVFSGYVNCGFHNSAME 670
           V P+  T   + SG      +  A+E
Sbjct: 526 VAPNSVTYTVLISGCCKMSKYGKAIE 551



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 84/455 (18%), Positives = 176/455 (38%), Gaps = 103/455 (22%)

Query: 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
           R +++++I+ACG + N   A ++  QM   G+ P   T++  + A  +       +   +
Sbjct: 213 RSTYNNLINACGSSGNWREALKVSKQMTENGVGPDLVTHNIVLSAYKTGAQYSKALSYFE 272

Query: 353 IMQQNNLKPQDSTIATLSV-------ECSKALEL-------------DLAE--------A 384
           +M+  N++P D+T   + +       +C KA+++             D+          +
Sbjct: 273 LMKGTNIRP-DTTTRNIVIYCLVKLGQCEKAIDIFNSMREKRAECRPDIVTFTSIIHLYS 331

Query: 385 LLDQISRCT-----------NPK--PFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIR 430
           L  Q+  C             P    ++A + A       E A+ +F K++   L PD+ 
Sbjct: 332 LSGQVENCKAVFSTMLAEGLTPTIVSYNALIGAYAFHGMSEEALSVFKKIKASGLLPDVV 391

Query: 431 TYELLFSLFGNVNAPYEEGNMFSQVDSAK-RINAIEM---------------------DM 468
           +Y  L S +G    P +   MF+ +  AK + N +                       +M
Sbjct: 392 SYTSLLSSYGRSKQPKKAREMFNMMKKAKLKPNVVSFNALIDAYGSNGLLADAVKVLREM 451

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSK---TPLGTPTYNTVLHSLVEAQES 525
            ++ I  + +++  LL A G  G    +      +K     L T   N+ + S +   E 
Sbjct: 452 EQDGIHPNIVTICTLLAACGRCGQKVNIDAVLSAAKMRGIKLNTVACNSAIGSYMNVGEY 511

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMI----------------------------DCCSII 557
            +A+ ++  M+   + PN+ TY ++I                            + CS +
Sbjct: 512 EKAVALYNSMRKMKVAPNSVTYTVLISGCCKMSKYGKAIEFFADMMELKIALTKEVCSSV 571

Query: 558 RCFKS-------ASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGI 610
            C  S       A ++ +MM   G  P  +T+TA++        + +A +L+  +    I
Sbjct: 572 ICAYSKQGQITEAESIFTMMKMAGCCPDIITFTAMLHAYNAGEHWGKACDLIQEMEDYDI 631

Query: 611 PHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
             D +  + +++   ++G    +  + E M + ++
Sbjct: 632 QLDTIACSALMRAFNKRGNPSQVLILAEFMKEKEI 666



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 80/417 (19%), Positives = 161/417 (38%), Gaps = 68/417 (16%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           S++ ++ + GR++    A ++   M+   L+P+  +++  I A  S+  L + ++VL+ M
Sbjct: 392 SYTSLLSSYGRSKQPKKAREMFNMMKKAKLKPNVVSFNALIDAYGSNGLLADAVKVLREM 451

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDT------- 407
           +Q+ + P   TI TL   C +  +    +  +D +      +       AC++       
Sbjct: 452 EQDGIHPNIVTICTLLAACGRCGQ----KVNIDAVLSAAKMRGIKLNTVACNSAIGSYMN 507

Query: 408 MDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM 466
           + + E+A+ ++  MR+ K+ P+  TY +L S                    +K   AIE 
Sbjct: 508 VGEYEKAVALYNSMRKMKVAPNSVTYTVLIS---------------GCCKMSKYGKAIEF 552

Query: 467 --DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVE 521
             DM    I  +     +++ A   +G I E    F   K     P   T+  +LH+   
Sbjct: 553 FADMMELKIALTKEVCSSVICAYSKQGQITEAESIFTMMKMAGCCPDIITFTAMLHAYNA 612

Query: 522 AQESHRAMEIFKQMK---------TCG--------------------------IPPNAAT 546
            +   +A ++ ++M+          C                           IP + A 
Sbjct: 613 GEHWGKACDLIQEMEDYDIQLDTIACSALMRAFNKRGNPSQVLILAEFMKEKEIPFSDAI 672

Query: 547 YNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVS 606
           +  M+  CS++R +++   L+ +M              L+ +L   G  +  + L   ++
Sbjct: 673 FFEMVSACSLLRDWRTILNLMKLMEPSFSVVSIGLLNQLLHVLGRSGKIESMMKLFYKIT 732

Query: 607 LEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
             G   +   Y+ +LK     G       ++E M    +QP     ++  S YV  G
Sbjct: 733 ASGAEINFNTYSIMLKNLLAVGNWRKYIEVLEWMEDAGIQPSIGM-YYDISSYVQKG 788



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/167 (21%), Positives = 72/167 (43%), Gaps = 4/167 (2%)

Query: 489 AEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYN 548
           A G+  E+ ++ C   +     TYN ++++   A +   AM I + M    IPP+ +TYN
Sbjct: 162 ARGLFFEMQEWRCKPDSE----TYNALINAHGRAGQWRWAMNIMEDMLREAIPPSRSTYN 217

Query: 549 IMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLE 608
            +I+ C     ++ A  +   M  +G  P  +T+  ++        + +AL+  +L+   
Sbjct: 218 NLINACGSSGNWREALKVSKQMTENGVGPDLVTHNIVLSAYKTGAQYSKALSYFELMKGT 277

Query: 609 GIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFV 655
            I  D    N ++    + G+ +    I   M + + +  P    F 
Sbjct: 278 NIRPDTTTRNIVIYCLVKLGQCEKAIDIFNSMREKRAECRPDIVTFT 324



 Score = 48.5 bits (114), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 73/170 (42%), Gaps = 2/170 (1%)

Query: 509 TPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVS 568
           T  YN ++        + +A  +F +M+     P++ TYN +I+       ++ A  ++ 
Sbjct: 143 TDMYNMMIRLHARHNLTDQARGLFFEMQEWRCKPDSETYNALINAHGRAGQWRWAMNIME 202

Query: 569 MMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
            M+R+   P   TY  LI      G++ EAL +   ++  G+  D++ +N +L       
Sbjct: 203 DMLREAIPPSRSTYNNLINACGSSGNWREALKVSKQMTENGVGPDLVTHNIVLSAYKTGA 262

Query: 629 RIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678
           +        E M    ++PD +T + V    V  G    A++     SMR
Sbjct: 263 QYSKALSYFELMKGTNIRPDTTTRNIVIYCLVKLGQCEKAIDIFN--SMR 310


>gi|15221282|ref|NP_172694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122242333|sp|Q0WKV3.1|PPR36_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12300, mitochondrial; Flags: Precursor
 gi|110741411|dbj|BAF02254.1| hypothetical protein [Arabidopsis thaliana]
 gi|332190743|gb|AEE28864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 637

 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 92/389 (23%), Positives = 170/389 (43%), Gaps = 24/389 (6%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           ++ S +I+   R +   LA   M ++  LG +P++ T+   I  +  +  +   +E++  
Sbjct: 124 YTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDR 183

Query: 354 MQQNNLKPQDSTIATL-SVECSKALELDLAEALLDQISR--CT-NPKPFSAFLAACDTMD 409
           M +   KP   TI TL +  C    E + A  L+D++    C  N   +   L       
Sbjct: 184 MVEMGHKPDLITINTLVNGLCLSGKEAE-AMLLIDKMVEYGCQPNAVTYGPVLNVMCKSG 242

Query: 410 KPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
           +   A+++  KM ++ ++ D   Y ++        +     N+F         N +EM  
Sbjct: 243 QTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLF---------NEMEMKG 293

Query: 469 ARNNIQHSHISMKNLLKAL----GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQE 524
              NI   +I +     A     GA+ ++R++I+     K      T++ ++ S V+  +
Sbjct: 294 ITTNIITYNILIGGFCNAGRWDDGAK-LLRDMIK----RKINPNVVTFSVLIDSFVKEGK 348

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
              A E+ K+M   GI P+  TY  +ID          A+ +V +MV  G  P   T+  
Sbjct: 349 LREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNI 408

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
           LI         D+ L L   +SL G+  D + YNT+++  CE G+++V + + ++M   K
Sbjct: 409 LINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRK 468

Query: 645 VQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           V P+  T   +  G  + G    A+E  +
Sbjct: 469 VPPNIVTYKILLDGLCDNGESEKALEIFE 497



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 81/409 (19%), Positives = 170/409 (41%), Gaps = 33/409 (8%)

Query: 312 AEQLML--QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL 369
           AE ++L  +M   G QP++ TY   +  +         ME+L+ M++ N+K      + +
Sbjct: 210 AEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSII 269

Query: 370 SVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKPERAIKIFAKM-RQKL 425
                K   LD A  L +++      TN   ++  +       + +   K+   M ++K+
Sbjct: 270 IDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKI 329

Query: 426 RPDIRTYELLFSLFGNVNAPYEEGNMFSQV-------DSAKRINAIEMDMARNNIQHSHI 478
            P++ T+ +L   F       E   +  ++       D+    + I+     N++  ++ 
Sbjct: 330 NPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKAN- 388

Query: 479 SMKNLLKALGAEGMIRE---LIQYFCDSK----------------TPLGTPTYNTVLHSL 519
            M +L+ + G +  IR    LI  +C +                     T TYNT++   
Sbjct: 389 QMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGF 448

Query: 520 VEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQT 579
            E  + + A E+F++M +  +PPN  TY I++D        + A  +   + +       
Sbjct: 449 CELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDI 508

Query: 580 MTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQ 639
             Y  +I  + +    D+A +L   + L+G+   V  YN ++   C+KG +   E +  +
Sbjct: 509 GIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRK 568

Query: 640 MHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLE 688
           M ++   PD  T + +   ++  G    +++ ++ L       + ST++
Sbjct: 569 MEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFSVDASTIK 617



 Score = 65.9 bits (159), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 106/506 (20%), Positives = 202/506 (39%), Gaps = 75/506 (14%)

Query: 59  IVDALC-RGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKE 117
           +V+ LC  G+ + A  L+  +        A  +  +LN   +S      ME  R MEE+ 
Sbjct: 199 LVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERN 258

Query: 118 IGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHA 177
           I L+   Y +++  LCK G L+ A NL   + E  GI   +  YN  +G           
Sbjct: 259 IKLDAVKYSIIIDGLCKHGSLDNAFNLFNEM-EMKGITTNIITYNILIGGFCNAGRWDDG 317

Query: 178 NLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSF 237
              L  M  R +  N VT++ L+   V +  L    E+ ++ I H  ++  ++     ++
Sbjct: 318 AKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMI-HRGIAPDTI-----TY 371

Query: 238 TRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFS 297
           T L D    +    H+     M  L +++  +  +R                     +F+
Sbjct: 372 TSLID---GFCKENHLDKANQMVDLMVSKGCDPNIR---------------------TFN 407

Query: 298 DVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQN 357
            +I+   +        +L  +M   G+   + TY+  I+       L    E+ + M   
Sbjct: 408 ILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSR 467

Query: 358 NLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKI 417
            + P    I T  +             LLD +               CD   + E+A++I
Sbjct: 468 KVPPN---IVTYKI-------------LLDGL---------------CDN-GESEKALEI 495

Query: 418 FAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHS 476
           F K+ + K+  DI  Y ++     N +   +  ++F  +     +  ++  +   NI   
Sbjct: 496 FEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLP----LKGVKPGVKTYNIMIG 551

Query: 477 HISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMK 536
            +  K  L    AE + R++ +   D   P G  TYN ++ + +   ++ +++++ +++K
Sbjct: 552 GLCKKGPLSE--AELLFRKMEE---DGHAPDGW-TYNILIRAHLGDGDATKSVKLIEELK 605

Query: 537 TCGIPPNAATYNIMIDCCSIIRCFKS 562
            CG   +A+T  ++ID  S  R  KS
Sbjct: 606 RCGFSVDASTIKMVIDMLSDGRLKKS 631



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 95/198 (47%), Gaps = 10/198 (5%)

Query: 484 LKALGAEGMIRELIQYFCDSKTPLGTPT-YNTVLHSLVEAQESHRAMEIFKQMKTCGIPP 542
           +KA  A  + R++I        PL T   ++ +  ++ + ++    + + KQM+  GI  
Sbjct: 67  IKADDAIDLFRDMIH-----SRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAH 121

Query: 543 NAATYNIMIDCCSIIRCFKSASALVSM--MVRDGFYPQTMTYTALIKILLDYGDFDEALN 600
           N  T +IMI+C    RC K   A  +M  +++ G+ P T+T++ LI  L   G   EAL 
Sbjct: 122 NLYTLSIMINC--FCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALE 179

Query: 601 LLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYV 660
           L+D +   G   D++  NT++   C  G+      +I++M +   QP+  T   V +   
Sbjct: 180 LVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMC 239

Query: 661 NCGFHNSAMEALQVLSMR 678
             G    AME L+ +  R
Sbjct: 240 KSGQTALAMELLRKMEER 257



 Score = 63.2 bits (152), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 78/355 (21%), Positives = 143/355 (40%), Gaps = 26/355 (7%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A  L  +M+  G+  +  TY+  I    +     +G ++L+ M +  + P   T + L  
Sbjct: 282 AFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLID 341

Query: 372 ECSKALELDLAEAL-LDQISRCTNPKPF---SAFLAAC--DTMDKPERAIKIFAKMRQKL 425
              K  +L  AE L  + I R   P      S     C  + +DK  + + +   + +  
Sbjct: 342 SFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLM--VSKGC 399

Query: 426 RPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLK 485
            P+IRT+ +L + +   N   +   +F +             M+   +    ++   L++
Sbjct: 400 DPNIRTFNILINGYCKANRIDDGLELFRK-------------MSLRGVVADTVTYNTLIQ 446

Query: 486 A---LGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPP 542
               LG   + +EL Q     K P    TY  +L  L +  ES +A+EIF++++   +  
Sbjct: 447 GFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMEL 506

Query: 543 NAATYNIMI-DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNL 601
           +   YNI+I   C+  +   +     S+ ++ G  P   TY  +I  L   G   EA  L
Sbjct: 507 DIGIYNIIIHGMCNASKVDDAWDLFCSLPLK-GVKPGVKTYNIMIGGLCKKGPLSEAELL 565

Query: 602 LDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVF 656
              +  +G   D   YN +++     G       +IE++ +     D ST   V 
Sbjct: 566 FRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFSVDASTIKMVI 620


>gi|242070261|ref|XP_002450407.1| hypothetical protein SORBIDRAFT_05g004830 [Sorghum bicolor]
 gi|241936250|gb|EES09395.1| hypothetical protein SORBIDRAFT_05g004830 [Sorghum bicolor]
          Length = 462

 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 81/373 (21%), Positives = 144/373 (38%), Gaps = 51/373 (13%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           AE +++    LGL P   TY+  + A     GL  G+ V+  M++  ++P   T      
Sbjct: 31  AESVVVDAIRLGLPPDVVTYNTLLAAHCRVAGLDAGIAVVHRMREAGVRPDAVT------ 84

Query: 372 ECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIR 430
                                     +++ +   D      RA+ +F +M R  + PD  
Sbjct: 85  --------------------------YNSLITGADRSGLTVRALDLFDEMLRSGVAPDSW 118

Query: 431 TYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAE 490
           +Y  L         P     +F+             DMA   +     +   LL  L   
Sbjct: 119 SYNALMHCLFRSGHPEHAYRVFA-------------DMADKGVAPCATTYNTLLDGLFKA 165

Query: 491 GMIR---ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATY 547
           G       + +Y   +  P+G  TYNT+++ L ++ +   A  + K++      PNA TY
Sbjct: 166 GHATNAYRMFRYLQRAGLPVGIVTYNTMINGLCKSGKVGYARMVLKELGRTEHAPNAVTY 225

Query: 548 NIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSL 607
             ++ CC     F+        ++  G+      YT +I  L+  G   EA    +L+  
Sbjct: 226 TTVMKCCFRYGRFEQGLETFLSLLEGGYISDAFPYTTVISALVKKGRMQEANTYCELMIQ 285

Query: 608 EGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNS 667
            G   D   YNT++   C++G+ID    ++  M +  ++ D  T   + +G    G   +
Sbjct: 286 SGSTLDNACYNTLIHLRCQEGKIDDAFELLNMMEEGGLESDEYTFSILVNGLCKMGQIEA 345

Query: 668 AMEALQVLSMRML 680
           A +  Q+ SM M+
Sbjct: 346 AEK--QIWSMEMM 356



 Score = 49.7 bits (117), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 65/173 (37%)

Query: 503 SKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKS 562
           ++  L T   N  L +L       RA  +       G+PP+  TYN ++     +    +
Sbjct: 6   AQLALSTRLMNVGLAALCRGGWLDRAESVVVDAIRLGLPPDVVTYNTLLAAHCRVAGLDA 65

Query: 563 ASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILK 622
             A+V  M   G  P  +TY +LI      G    AL+L D +   G+  D   YN ++ 
Sbjct: 66  GIAVVHRMREAGVRPDAVTYNSLITGADRSGLTVRALDLFDEMLRSGVAPDSWSYNALMH 125

Query: 623 KACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
                G  +    +   M    V P  +T + +  G    G   +A    + L
Sbjct: 126 CLFRSGHPEHAYRVFADMADKGVAPCATTYNTLLDGLFKAGHATNAYRMFRYL 178


>gi|302808965|ref|XP_002986176.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
 gi|300146035|gb|EFJ12707.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
          Length = 609

 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 107/232 (46%), Gaps = 13/232 (5%)

Query: 427 PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKA 486
           PD+ +Y ++ S F N    +    +  ++ SA          A +   H+ I +  +  A
Sbjct: 110 PDVCSYNIVISGFCNAGDLHAALELLEEMKSA--------GFAPDAFTHTPI-ITAMANA 160

Query: 487 LGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAAT 546
              +G +  L    CD        TY  ++ +   A++   AM++ ++M+  G PPN  T
Sbjct: 161 GDLDGAMDHLRSMGCDPNVV----TYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVT 216

Query: 547 YNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVS 606
           YN+++D    +    +A  +V  M+  GF P  MT+ +L+      G+ D+A  LL ++ 
Sbjct: 217 YNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMV 276

Query: 607 LEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
            +G+  +V+ Y+ ++   C+  +    + ++E+M    V PD  T   +  G
Sbjct: 277 AKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALIHG 328



 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 81/366 (22%), Positives = 158/366 (43%), Gaps = 21/366 (5%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ ++ A  +    G A+ ++ +M   G  P+  T++  +        + +  ++L IM
Sbjct: 216 TYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIM 275

Query: 355 QQNNLKPQDSTIATL-SVECSKALELDLAEALLDQISRCTNPKPF--SAFLAACDTMDKP 411
               ++P   T + L    C     L+  E L +  +R   P  F  SA +      DK 
Sbjct: 276 VAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKI 335

Query: 412 ERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           E A ++  +M      PD+  Y  +   F       + G +    ++ K +  +      
Sbjct: 336 EEAEQMLRRMAGSGCTPDVVVYSSIIHAF------CKSGKLL---EAQKTLQEMRKQRKS 386

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPL-GTPTYNTVLHSLVEAQESHRAM 529
            ++   +  +  L K LG     + +++   +S   L    TY+TV++ L ++     A 
Sbjct: 387 PDVVTYNTVIDGLCK-LGKIAEAQVILEQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQ 445

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRC--FKSASALVSMMVRDGFYPQTMTYTALIK 587
           ++  +M   G  P+  TY  +ID   + +C   + A  L+  M R G  P  +TYT LI 
Sbjct: 446 KLLDRMCKAGCNPDVVTYTTIID--GLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLIS 503

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ- 646
            L      DEA  +++ +   G P +++ YNT++   C  GRI   + ++++M   + + 
Sbjct: 504 GLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAEC 563

Query: 647 -PDPST 651
            PD +T
Sbjct: 564 SPDAAT 569



 Score = 79.7 bits (195), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 90/404 (22%), Positives = 163/404 (40%), Gaps = 46/404 (11%)

Query: 308 NSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIA 367
           N+G  +  M  ++S+G  P+  TY   I A    + L   M++L+ M++    P    + 
Sbjct: 159 NAGDLDGAMDHLRSMGCDPNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPN---LV 215

Query: 368 TLSVECSKALELDLAEALLDQISR------CTNPKPFSAFLAACDTMDKPERAIKIFAKM 421
           T +V      +L +  A  D + +        N   F++ +         + A K+   M
Sbjct: 216 TYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIM 275

Query: 422 RQK-LRPDIRTYELLFS------LFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR-NNI 473
             K +RP++ TY  L         F       EE         A   +A+   + + + I
Sbjct: 276 VAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKI 335

Query: 474 QHSHISMKNLLKALGAEGMIRELIQY------FCDS-----------------KTPLGTP 510
           + +    + +L+ +   G   +++ Y      FC S                 K+P    
Sbjct: 336 EEA----EQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSP-DVV 390

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCG-IPPNAATYNIMIDCCSIIRCFKSASALVSM 569
           TYNTV+  L +  +   A  I +QM+  G + P+  TY+ +I+          A  L+  
Sbjct: 391 TYNTVIDGLCKLGKIAEAQVILEQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDR 450

Query: 570 MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
           M + G  P  +TYT +I  L   G  +EA  LL  +   G   +V+ Y T++   C+  +
Sbjct: 451 MCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARK 510

Query: 630 IDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           +D  E ++E+M      P+  T + + +G    G    A + +Q
Sbjct: 511 VDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQ 554



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 96/469 (20%), Positives = 178/469 (37%), Gaps = 69/469 (14%)

Query: 153 GIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAV 212
           G  P +  Y + + A A+   +  A   L+ M  R    N VTY  L+        + A 
Sbjct: 174 GCDPNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAA 233

Query: 213 HEIWEDYIKH-YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYI-NRTSEG 270
            ++ +  I+  ++ ++ +    V  F +  ++  A + L  MVA  M   +   +   +G
Sbjct: 234 QDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDG 293

Query: 271 RLRSSRLDIPIPLNALPVMKVLR--------WSFSDVIHACGRTQNSGLAEQLMLQMQSL 322
             +S +      L A  V++ ++        +++S +IH   +      AEQ++ +M   
Sbjct: 294 LCKSQKF-----LEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGS 348

Query: 323 GLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLA 382
           G  P    Y   I A      L    + L+ M++    P   T  T+     K  ++  A
Sbjct: 349 GCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEA 408

Query: 383 EALLDQISRCTNPKP----FSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFS 437
           + +L+Q+    +  P    +S  +      D    A K+  +M +    PD+ TY  +  
Sbjct: 409 QVILEQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTI-- 466

Query: 438 LFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELI 497
                            +D   +   +E               + LL+ +   G    ++
Sbjct: 467 -----------------IDGLCKCGRLE-------------EAEYLLQGMKRAGCAPNVV 496

Query: 498 QYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSII 557
                        TY T++  L +A++   A  + ++M+  G PPN  TYN M++   + 
Sbjct: 497 -------------TYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVS 543

Query: 558 RCFKSASALVSMMVRDG---FYPQTMTYTALIKILLDYGDFDEALNLLD 603
              K A  LV  M +DG     P   TY  ++  L+      EA  LL+
Sbjct: 544 GRIKEAQQLVQRM-KDGRAECSPDAATYRTIVNALMSSDLVQEAEQLLE 591



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 89/445 (20%), Positives = 177/445 (39%), Gaps = 62/445 (13%)

Query: 107 METWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLG 166
           M+    M E+    N   Y +++ ALCK   +  A +++  + E  G  P +  +NS + 
Sbjct: 199 MKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEG-GFAPNVMTFNSLVD 257

Query: 167 ACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLK-LAVWQKNLSAVHEIWEDYIKHYSL 225
              K  ++  A   L +M ++ +  N VTY+ L+  L   QK L A   + E   +  + 
Sbjct: 258 GFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKTRGVTP 317

Query: 226 SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNA 285
             F+    +    +   ++ A + L+ M        + +                     
Sbjct: 318 DAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVV--------------------- 356

Query: 286 LPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLR 345
                     +S +IHA  ++     A++ + +M+     P   TY+  I  +     + 
Sbjct: 357 ----------YSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIA 406

Query: 346 NGMEVLKIMQQN-NLKPQDSTIATLSVECSKALELDLAEALLDQISRC-TNPKPFSAF-- 401
               +L+ MQ++ ++ P   T +T+     K+  L  A+ LLD++ +   NP   +    
Sbjct: 407 EAQVILEQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTI 466

Query: 402 ---LAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSA 458
              L  C  +++ E  ++     R    P++ TY  L S                +VD A
Sbjct: 467 IDGLCKCGRLEEAEYLLQ--GMKRAGCAPNVVTYTTLISGLCKAR----------KVDEA 514

Query: 459 KRINAIEMDMARN-NIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLG--TPTY 512
           +R+    M+  RN     + ++   ++  L   G I+E   L+Q   D +        TY
Sbjct: 515 ERV----MEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAECSPDAATY 570

Query: 513 NTVLHSLVEAQESHRAMEIFKQMKT 537
            T++++L+ +     A ++ +QMK+
Sbjct: 571 RTIVNALMSSDLVQEAEQLLEQMKS 595


>gi|51971677|dbj|BAD44503.1| hypothetical protein [Arabidopsis thaliana]
          Length = 447

 Score = 89.0 bits (219), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 137/343 (39%), Gaps = 23/343 (6%)

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKP-- 411
           M+   + P   T A ++   + A + D A  L   +      +  ++F    D + K   
Sbjct: 111 MRSLRIGPSPKTFAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLCKSKR 170

Query: 412 -ERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
            E+A ++F  +R +   D  TY ++              N +  +    +   +  +M  
Sbjct: 171 VEKAYELFRALRGRFSVDTVTYNVIL-------------NGWCLIKRTPKTLEVLKEMVE 217

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKT---PLGTPTYNTVLHSLVEAQESHR 527
             I  +  +   +LK     G IR   ++F + K     +   TY TV+H    A E  R
Sbjct: 218 RGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKR 277

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A  +F +M   G+ P+ ATYN MI         ++A  +   MVR G+ P   TY  LI+
Sbjct: 278 ARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIR 337

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
            L   G+F     L+  +  EG   +   YN +++   E   ++    + E+M      P
Sbjct: 338 GLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGSGDCLP 397

Query: 648 DPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEK 690
           +  T + + SG     F     E + V   +   +E+  L+ K
Sbjct: 398 NLDTYNILISGM----FVRKRSEDMVVAGNQAFAKEILRLQSK 436


>gi|356560499|ref|XP_003548529.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic-like [Glycine max]
          Length = 836

 Score = 89.0 bits (219), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 121/559 (21%), Positives = 224/559 (40%), Gaps = 64/559 (11%)

Query: 129 MQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRM 188
           + A CKGG + +A +L   + E  G++P +  YN+ +    K      A    D M    
Sbjct: 262 INAFCKGGRVGDAVDLFCKM-EGLGVFPNVVTYNNVIDGLFKSGRFEEALRFKDRMVRSK 320

Query: 189 VGKNEVTY----TELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLK 244
           V  + VTY    + L+KL ++++   A   + E Y   ++ +       +  + R  D+ 
Sbjct: 321 VNPSVVTYGVLISGLMKLEMFEE---ANEVLVEMYSMGFAPNEVVFNALIDGYCRKGDMG 377

Query: 245 SAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACG 304
            A      M   AM G                            MK    +F+ ++    
Sbjct: 378 EALRVRDEM---AMKG----------------------------MKPNFVTFNTLLQGFC 406

Query: 305 RTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDS 364
           R+     AEQ+++ + S GL  +       I  ++   G  + ++++  +   N++  DS
Sbjct: 407 RSNQMEQAEQVLVYILSSGLSVNMDVCSYVIHRLMERSGFVSALKIVTKLLSGNIRVSDS 466

Query: 365 TIATLSV---EC---SKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIF 418
            +  L V   +C   S+A+EL    A +  ++   N    +A L         E   ++ 
Sbjct: 467 LLTPLVVGLCKCEGHSEAIELWFKLAAVKGLA--ANTVTSNALLHGLCERGNMEEVFEVL 524

Query: 419 AKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSH 477
            +M +K L  D  +Y  L  +FG           + +++ A ++     +M +   Q   
Sbjct: 525 KQMLEKGLLLDRISYNTL--IFGCCK--------WGKIEEAFKLKE---EMVQQEFQPDT 571

Query: 478 ISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQ 534
            +   L+K L   G I ++ +   ++K     P   TY  +L    +A     A++ FK 
Sbjct: 572 YTYNFLMKGLADMGKIDDVHRLLHEAKEYGFVPNVYTYALLLEGYCKADRIEDAVKFFKN 631

Query: 535 MKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGD 594
           +    +  ++  YNI+I     I     A  L   M   G  P   TY++LI  +   G 
Sbjct: 632 LDYEKVELSSVVYNILIAAYCRIGNVTEAFKLRDAMKSRGILPTCATYSSLIHGMCCIGR 691

Query: 595 FDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHF 654
            DEA  + + +  EG+  +V  Y  ++   C+ G++D++  I+ +M  N ++P+  T   
Sbjct: 692 VDEAKEIFEEMRNEGLLPNVFCYTALIGGHCKLGQMDIVGSILLEMSSNGIRPNKITYTI 751

Query: 655 VFSGYVNCGFHNSAMEALQ 673
           +  GY   G    A E L 
Sbjct: 752 MIDGYCKLGNMKEARELLN 770


>gi|296081530|emb|CBI20053.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score = 89.0 bits (219), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 85/379 (22%), Positives = 159/379 (41%), Gaps = 30/379 (7%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           S++ +IH      N   A +++  M+  G++P S+TY   I  +  +  L     +   M
Sbjct: 264 SYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKM 323

Query: 355 QQNNLKPQDSTIATL-SVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDK 410
            +  L P   T  TL    C+K  +L+ A +  D++ +     +   ++  + A     +
Sbjct: 324 VEIGLVPNAVTYNTLIDGYCNKG-DLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGR 382

Query: 411 PERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
              A  +  +MR+K + PD  TY +L              N +S+  +AK+   +  +M 
Sbjct: 383 MGEADDMIKEMRKKGIIPDAITYNILI-------------NGYSRCGNAKKAFDLHNEML 429

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESH 526
              I+ +H++  +L+  L     ++E   L +   D         +N ++          
Sbjct: 430 SKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVE 489

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRC----FKSASALVSMMVRDGFYPQTMTY 582
           RA  + K+M    +PP+  T+N ++      RC     + A  L+  M R G  P  ++Y
Sbjct: 490 RAFMLLKEMDRKSVPPDEVTFNTLMQG----RCREGKVEEARMLLDEMKRRGIKPDHISY 545

Query: 583 TALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642
             LI      GD  +A  + D +   G    +L YN ++K  C+    D+ E ++++M  
Sbjct: 546 NTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVN 605

Query: 643 NKVQPDPSTCHFVFSGYVN 661
             + PD ST   +  G  N
Sbjct: 606 KGISPDDSTYLSLIEGMGN 624



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 75/370 (20%), Positives = 152/370 (41%), Gaps = 49/370 (13%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           ++F+ +++   +      A + +  M+ LG +P+  +Y+  I    S   +     +L  
Sbjct: 228 YTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDA 287

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLD---QISRCTNPKPFSAFLAACDTMDK 410
           M+   ++P   T  +L     K   L+ A  L D   +I    N   ++  +        
Sbjct: 288 MRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGD 347

Query: 411 PERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
            ERA     +M +K + P + TY LL      V+A + EG M    D             
Sbjct: 348 LERAFSYRDEMVKKGIMPSVSTYNLL------VHALFMEGRMGEADD------------- 388

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAM 529
                        ++K +  +G+I + I             TYN +++       + +A 
Sbjct: 389 -------------MIKEMRKKGIIPDAI-------------TYNILINGYSRCGNAKKAF 422

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
           ++  +M + GI P   TY  +I   S     K A  L   ++  G  P  + + A++   
Sbjct: 423 DLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGH 482

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649
              G+ + A  LL  +  + +P D + +NT+++  C +G+++    ++++M +  ++PD 
Sbjct: 483 CANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDH 542

Query: 650 STCHFVFSGY 659
            + + + SGY
Sbjct: 543 ISYNTLISGY 552



 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 72/275 (26%), Positives = 123/275 (44%), Gaps = 22/275 (8%)

Query: 412 ERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           E A +I   MR K + PD  TY  L S         E   +F   D    I  +   +  
Sbjct: 279 EGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLF---DKMVEIGLVPNAVTY 335

Query: 471 NNIQHSHISMKNLLKALG-AEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAM 529
           N +   + +  +L +A    + M+++ I             TYN ++H+L        A 
Sbjct: 336 NTLIDGYCNKGDLERAFSYRDEMVKKGIMP--------SVSTYNLLVHALFMEGRMGEAD 387

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
           ++ K+M+  GI P+A TYNI+I+  S     K A  L + M+  G  P  +TYT+LI +L
Sbjct: 388 DMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVL 447

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649
                  EA +L + +  +G+  DV+++N ++   C  G ++    ++++M +  V PD 
Sbjct: 448 SRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDE 507

Query: 650 STCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEV 684
            T + +  G    G         +V   RML +E+
Sbjct: 508 VTFNTLMQGRCREG---------KVEEARMLLDEM 533



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 70/153 (45%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           T N +L   ++      A  ++ +M    I     T+NIM++        K A   +  M
Sbjct: 194 TCNDMLSLFLKLNRMEMAWVLYAEMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFM 253

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
              GF P  ++Y  +I      G+ + A  +LD + ++GI  D   Y +++   C++GR+
Sbjct: 254 EGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRL 313

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
           +    + ++M +  + P+  T + +  GY N G
Sbjct: 314 EEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKG 346



 Score = 46.2 bits (108), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 57/262 (21%), Positives = 118/262 (45%), Gaps = 6/262 (2%)

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
           M +K I  +   Y L++ AL   G + EA ++I  + ++ GI P    YN  +   ++  
Sbjct: 358 MVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKK-GIIPDAITYNILINGYSRCG 416

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYSLSIFSLR 231
           +   A    + M S+ +    VTYT L+ +   +  +    +++E  + +  S  +    
Sbjct: 417 NAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFN 476

Query: 232 KFVWSFTRLRDLKSAYETLQHMVALAM-MGKLYINRTSEGRLRSSRL-DIPIPLNALP-- 287
             V       +++ A+  L+ M   ++   ++  N   +GR R  ++ +  + L+ +   
Sbjct: 477 AMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRR 536

Query: 288 VMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNG 347
            +K    S++ +I   GR  +   A ++  +M S+G  P+  TY+  I+ +  ++     
Sbjct: 537 GIKPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLA 596

Query: 348 MEVLKIMQQNNLKPQDSTIATL 369
            E+LK M    + P DST  +L
Sbjct: 597 EELLKEMVNKGISPDDSTYLSL 618


>gi|224133408|ref|XP_002321560.1| predicted protein [Populus trichocarpa]
 gi|222868556|gb|EEF05687.1| predicted protein [Populus trichocarpa]
          Length = 491

 Score = 89.0 bits (219), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 126/289 (43%), Gaps = 25/289 (8%)

Query: 395 PKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTY-------------ELLFSLF- 439
           PK F+       +  KP RA+K+F  M Q     D++++             E+ ++LF 
Sbjct: 136 PKTFAIIAERYASAGKPHRAVKVFLSMHQFGCFQDLQSFNTILDVLCKSKRVEMAYNLFK 195

Query: 440 ---GNVNAPYEEGN-MFSQVDSAKRIN-AIEM--DMARNNIQHSHISMKNLLKALGAEGM 492
              G   A     N M +     KR N A+EM  +M +  +  +  S   +LK     G 
Sbjct: 196 VFKGKFRADCVSYNVMVNGWCLIKRTNKALEMLKEMVKRGLTPNLTSYNTMLKGYFRAGQ 255

Query: 493 IRELIQYFCDSKT---PLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNI 549
           I E   +F + K     +   TY TV+H    A E  RA ++F  M   G+ P+ ATYN 
Sbjct: 256 INEAWDFFLEMKKRDCEIDVITYTTVIHGFGVAGEIKRARKVFDTMVKKGVLPSVATYNA 315

Query: 550 MIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEG 609
            I          +A  +   MV  G+ P ++TY  +I+ L   G+ + A+  +  +  +G
Sbjct: 316 FIQVLCKKDNVDNAIVIFEEMVVKGYVPNSITYNLVIRGLCHRGEMERAMEFMGRMKDDG 375

Query: 610 IPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
              +V  YN +++  C++G ID    + ++M      P+  T + + S 
Sbjct: 376 CEPNVQTYNLVIRYFCDEGEIDKALDLFQKMTSGDCLPNLDTYNILISA 424


>gi|242035429|ref|XP_002465109.1| hypothetical protein SORBIDRAFT_01g032160 [Sorghum bicolor]
 gi|241918963|gb|EER92107.1| hypothetical protein SORBIDRAFT_01g032160 [Sorghum bicolor]
          Length = 1153

 Score = 89.0 bits (219), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 95/436 (21%), Positives = 180/436 (41%), Gaps = 66/436 (15%)

Query: 288 VMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNG 347
           ++K    +F+ V    G       A   +  M+  G+  + +TY+G I  +V        
Sbjct: 138 IVKANVGTFATVFSGVGVQGGLRSAPVALPVMREAGMSLNGYTYNGLIYFLVKSGFDAEA 197

Query: 348 MEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI-SRCTNPKPFSAFLA--A 404
           MEV K M ++ + P   T + L V   K  ++D    LL+++ +R   P  +S  +    
Sbjct: 198 MEVYKAMVEDGISPSVRTYSVLMVSFGKKRDVDTVLWLLNEMEARGVKPNVYSYTICIRV 257

Query: 405 CDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQV-------- 455
                + + A +I  KM     +PD+ T+ ++  +  +     +  ++F ++        
Sbjct: 258 LGQAARFDEAYQILGKMEDSGCKPDVVTHTVVIQVLCDAGRLSDAKDVFWKMKASDQKPD 317

Query: 456 ------------DSAKRINAIEM--DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFC 501
                       DS    + +E+   M  +    + +S   ++ AL   G + E +  F 
Sbjct: 318 RVTYITLLDKCGDSGDSQSVMEIWNAMVADGYNDNIVSYTAVVDALCQVGRLDEALAVFD 377

Query: 502 DSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID------ 552
           + K    +P   +YN+++   ++A    RA+E+F  M  CG  PN  T+ + I+      
Sbjct: 378 EMKEKGISPEQYSYNSLISGFLKADMFDRALELFNHMNACGPSPNGYTHVLFINYYGKSG 437

Query: 553 -------------CCSIIRCFKSASALVSMMVRDG--------FY--------PQTMTYT 583
                           I+    +A+A++S + R G        FY        P T+TYT
Sbjct: 438 QSLKAIQRYEHMKSKGIVPDVAAANAVLSSLARSGRLGMAKRVFYELKDMGVSPDTITYT 497

Query: 584 ALIKILLDYGDFDEALNLL-DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642
            +IK        DEA+N   D+V    +P DVL  N+++    + G+ +    +  Q+ +
Sbjct: 498 MMIKCCSKASKADEAMNFFSDMVETGCVP-DVLALNSLIDTLYKGGKGNEAWKLFHQLKE 556

Query: 643 NKVQPDPSTCHFVFSG 658
            K++P   T + + SG
Sbjct: 557 MKIEPTNGTYNTLLSG 572



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 89/383 (23%), Positives = 164/383 (42%), Gaps = 29/383 (7%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           +S++  I   G+      A Q++ +M+  G +P   T+   I+ +     L +  +V   
Sbjct: 249 YSYTICIRVLGQAARFDEAYQILGKMEDSGCKPDVVTHTVVIQVLCDAGRLSDAKDVFWK 308

Query: 354 MQQNNLKPQDSTIATLSVECSKALE----LDLAEALLDQISRCTNPKPFSAFLAACDTMD 409
           M+ ++ KP   T  TL  +C  + +    +++  A++       N   ++A + A   + 
Sbjct: 309 MKASDQKPDRVTYITLLDKCGDSGDSQSVMEIWNAMVAD-GYNDNIVSYTAVVDALCQVG 367

Query: 410 KPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQ-VDSAKRINAIEMD 467
           + + A+ +F +M++K + P+  +Y  L S F        + +MF + ++    +NA    
Sbjct: 368 RLDEALAVFDEMKEKGISPEQYSYNSLISGF-------LKADMFDRALELFNHMNAC--- 417

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQE 524
              +   ++H+   N     G  G   + IQ +   K+    P     N VL SL  +  
Sbjct: 418 -GPSPNGYTHVLFINYY---GKSGQSLKAIQRYEHMKSKGIVPDVAAANAVLSSLARSGR 473

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
              A  +F ++K  G+ P+  TY +MI CCS       A    S MV  G  P  +   +
Sbjct: 474 LGMAKRVFYELKDMGVSPDTITYTMMIKCCSKASKADEAMNFFSDMVETGCVPDVLALNS 533

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
           LI  L   G  +EA  L   +    I      YNT+L     +G++  +  ++E+M  + 
Sbjct: 534 LIDTLYKGGKGNEAWKLFHQLKEMKIEPTNGTYNTLLSGLGREGKVKEVMHLLEEMTHSI 593

Query: 645 VQPDPSTCHFVF-----SGYVNC 662
             P+  T + V      +G VNC
Sbjct: 594 HPPNLITYNTVLDCLSKNGEVNC 616



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 135/662 (20%), Positives = 258/662 (38%), Gaps = 80/662 (12%)

Query: 55  TQMQIVDALCRGER-SRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMM 113
           T   ++  LC   R S A  +   +  +        +  +L+ C  S D   VME W  M
Sbjct: 285 THTVVIQVLCDAGRLSDAKDVFWKMKASDQKPDRVTYITLLDKCGDSGDSQSVMEIWNAM 344

Query: 114 EEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAK--- 170
                  N   Y  ++ ALC+ G L+EA  +   + E+ GI P    YNS +    K   
Sbjct: 345 VADGYNDNIVSYTAVVDALCQVGRLDEALAVFDEMKEK-GISPEQYSYNSLISGFLKADM 403

Query: 171 ----LHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWE-DYIKHYSL 225
               L    H N C         G +   YT +L +  + K+  ++  I   +++K   +
Sbjct: 404 FDRALELFNHMNAC---------GPSPNGYTHVLFINYYGKSGQSLKAIQRYEHMKSKGI 454

Query: 226 --SIFSLRKFVWSFTRLRDL---KSAYETLQHM------VALAMMGKLYINRTSEGRLRS 274
              + +    + S  R   L   K  +  L+ M      +   MM K   ++ S+     
Sbjct: 455 VPDVAAANAVLSSLARSGRLGMAKRVFYELKDMGVSPDTITYTMMIKC-CSKASKADEAM 513

Query: 275 SRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGF 334
           +     +    +P +  L  S  D ++  G+      A +L  Q++ + ++P++ TY+  
Sbjct: 514 NFFSDMVETGCVPDVLALN-SLIDTLYKGGKGNE---AWKLFHQLKEMKIEPTNGTYNTL 569

Query: 335 IRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTN 394
           +  +  +  ++  M +L+ M  +   P   T  T+    SK  E++ A  +L  ++    
Sbjct: 570 LSGLGREGKVKEVMHLLEEMTHSIHPPNLITYNTVLDCLSKNGEVNCAIGMLYSMTEKGC 629

Query: 395 PKPFSAFLAACDTMDKPER---AIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNM 451
               S++      + K ER   A ++F +M++ L PD  T   +   F       + G M
Sbjct: 630 TPDLSSYNTVMYGLIKEERFEEAFRMFCQMKKILAPDYATLCTILPSF------VKNGLM 683

Query: 452 FSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIR----------------- 494
              + + K    ++ D    +    H  M+ +L   G E  I                  
Sbjct: 684 KEALHTVKEY-ILKAD-CNTDKSSFHSLMEGILNKAGVEKSIEFAENIASRGILLNDFFL 741

Query: 495 -ELIQYFCDSK----------------TPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKT 537
             LI++ C  K                  L T +YN+++  LV+      A ++F +MK 
Sbjct: 742 CPLIRHLCKHKKALEAHQLFNKFKGLGVSLKTGSYNSLIRGLVDENLIDIAEDLFTEMKR 801

Query: 538 CGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDE 597
            G  P+  TYN+++D        +    + + M R G+    +TY  +I  L+     ++
Sbjct: 802 LGCGPDEFTYNLILDAMGKSMRIEEMLRVQAEMHRKGYESTYVTYNTIISGLVKSKRLEQ 861

Query: 598 ALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFS 657
           A++L   +  EG       Y  +L    + G++   E +  +M +   +P+ +  + + +
Sbjct: 862 AIDLYYNLMSEGFSPTPCTYGPLLDGLLKAGKMVDAENLFNEMLEYGCKPNCTIYNILLN 921

Query: 658 GY 659
           G+
Sbjct: 922 GH 923



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 76/335 (22%), Positives = 136/335 (40%), Gaps = 29/335 (8%)

Query: 349 EVLKIMQQNNLKPQDSTIATL--SVECSKAL-ELDLAEALLDQISRCTNPKPFSAFLAAC 405
           +V  +MQ+  +K    T AT+   V     L    +A  ++ +     N   ++  +   
Sbjct: 129 QVFDLMQKQIVKANVGTFATVFSGVGVQGGLRSAPVALPVMREAGMSLNGYTYNGLIYFL 188

Query: 406 DTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAK-RINA 463
                   A++++  M    + P +RTY +L   FG              VD+    +N 
Sbjct: 189 VKSGFDAEAMEVYKAMVEDGISPSVRTYSVLMVSFGKKR----------DVDTVLWLLNE 238

Query: 464 IEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFC---DSKTPLGTPTYNTVLHSLV 520
           +E    + N+    I     ++ LG      E  Q      DS       T+  V+  L 
Sbjct: 239 MEARGVKPNVYSYTIC----IRVLGQAARFDEAYQILGKMEDSGCKPDVVTHTVVIQVLC 294

Query: 521 EAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTM 580
           +A     A ++F +MK     P+  TY  ++D C      +S   + + MV DG+    +
Sbjct: 295 DAGRLSDAKDVFWKMKASDQKPDRVTYITLLDKCGDSGDSQSVMEIWNAMVADGYNDNIV 354

Query: 581 TYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQM 640
           +YTA++  L   G  DEAL + D +  +GI  +   YN+++       + D+ +  +E  
Sbjct: 355 SYTAVVDALCQVGRLDEALAVFDEMKEKGISPEQYSYNSLISGFL---KADMFDRALELF 411

Query: 641 -HQNKVQPDPST-CHFVFSGYVNCGFHNSAMEALQ 673
            H N   P P+   H +F  Y   G    +++A+Q
Sbjct: 412 NHMNACGPSPNGYTHVLFINYY--GKSGQSLKAIQ 444



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/239 (21%), Positives = 102/239 (42%), Gaps = 23/239 (9%)

Query: 417  IFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQH 475
            +F +M++    PD  TY L+    G             +++   R+ A   +M R   + 
Sbjct: 795  LFTEMKRLGCGPDEFTYNLILDAMGKS----------MRIEEMLRVQA---EMHRKGYES 841

Query: 476  SHISMKNLLKALGAEGMIRELIQYFCD------SKTPLGTPTYNTVLHSLVEAQESHRAM 529
            ++++   ++  L     + + I  + +      S TP    TY  +L  L++A +   A 
Sbjct: 842  TYVTYNTIISGLVKSKRLEQAIDLYYNLMSEGFSPTPC---TYGPLLDGLLKAGKMVDAE 898

Query: 530  EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
             +F +M   G  PN   YNI+++   I    ++   +   MV  G  P   +YT LI  L
Sbjct: 899  NLFNEMLEYGCKPNCTIYNILLNGHRIAGNTENVCQIFEKMVEQGINPDIKSYTVLIDTL 958

Query: 590  LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
               G  ++ L+    +   G+  D+++YN ++    +  RI+    +  +M +  + P+
Sbjct: 959  CTAGRLNDGLSYFRQLLELGLEPDLIIYNLLIDGLGKSERIEEAVCLFNEMKKKGIVPN 1017



 Score = 59.7 bits (143), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 82/360 (22%), Positives = 145/360 (40%), Gaps = 29/360 (8%)

Query: 294  WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
            ++++ ++ A G++       ++  +M   G + +  TY+  I  +V  + L   +++   
Sbjct: 809  FTYNLILDAMGKSMRIEEMLRVQAEMHRKGYESTYVTYNTIISGLVKSKRLEQAIDLYYN 868

Query: 354  MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR--CT-NPKPFSAFLAACDTMDK 410
            +      P   T   L     KA ++  AE L +++    C  N   ++  L        
Sbjct: 869  LMSEGFSPTPCTYGPLLDGLLKAGKMVDAENLFNEMLEYGCKPNCTIYNILLNGHRIAGN 928

Query: 411  PERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
             E   +IF KM  Q + PDI++Y +L           +  + F Q+        +E D+ 
Sbjct: 929  TENVCQIFEKMVEQGINPDIKSYTVLIDTLCTAGRLNDGLSYFRQLLEL----GLEPDLI 984

Query: 470  RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESH 526
              N+         L+  LG    I E +  F + K     P   TYN+++  L +A ++ 
Sbjct: 985  IYNL---------LIDGLGKSERIEEAVCLFNEMKKKGIVPNLYTYNSLILHLGKAGKAS 1035

Query: 527  RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
             A ++++++   G  PN  TYN +I   S+     S S   +    D         TALI
Sbjct: 1036 EAAQMYEELLIKGWKPNVFTYNALIRGYSV-----SGSTDNAYAAYDCVAVGVSLKTALI 1090

Query: 587  KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID----VIEFIIEQMHQ 642
              L+D    + A  L   +   G   D   YN IL    +  RI+    V E I E ++Q
Sbjct: 1091 SGLVDENLINIAEGLFAEMKRRGCGPDQFTYNLILDAIGKSMRIEEMLKVQEEIAEDLNQ 1150



 Score = 59.7 bits (143), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 80/357 (22%), Positives = 141/357 (39%), Gaps = 33/357 (9%)

Query: 311  LAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLS 370
            +AE L  +M+ LG  P   TY+  + A+     +    E+L++  + + K  +ST  T +
Sbjct: 791  IAEDLFTEMKRLGCGPDEFTYNLILDAMGKSMRIE---EMLRVQAEMHRKGYESTYVTYN 847

Query: 371  VECSKALELDLAEALLD----QISRCTNPKP--FSAFLAACDTMDKPERAIKIFAKMRQ- 423
               S  ++    E  +D     +S   +P P  +   L       K   A  +F +M + 
Sbjct: 848  TIISGLVKSKRLEQAIDLYYNLMSEGFSPTPCTYGPLLDGLLKAGKMVDAENLFNEMLEY 907

Query: 424  KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNL 483
              +P+   Y +L      +N     GN        + +  I   M    I     S   L
Sbjct: 908  GCKPNCTIYNIL------LNGHRIAGN-------TENVCQIFEKMVEQGINPDIKSYTVL 954

Query: 484  LKALGAEGMIRELIQYFCDSKTPLGTP----TYNTVLHSLVEAQESHRAMEIFKQMKTCG 539
            +  L   G + + + YF      LG       YN ++  L +++    A+ +F +MK  G
Sbjct: 955  IDTLCTAGRLNDGLSYF-RQLLELGLEPDLIIYNLLIDGLGKSERIEEAVCLFNEMKKKG 1013

Query: 540  IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEAL 599
            I PN  TYN +I           A+ +   ++  G+ P   TY ALI+     G  D A 
Sbjct: 1014 IVPNLYTYNSLILHLGKAGKASEAAQMYEELLIKGWKPNVFTYNALIRGYSVSGSTDNAY 1073

Query: 600  NLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVF 656
               D V++      V L   ++    ++  I++ E +  +M +    PD  T + + 
Sbjct: 1074 AAYDCVAV-----GVSLKTALISGLVDENLINIAEGLFAEMKRRGCGPDQFTYNLIL 1125



 Score = 58.9 bits (141), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 116/581 (19%), Positives = 215/581 (37%), Gaps = 64/581 (11%)

Query: 112 MMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKL 171
           +M E  + LN   Y  ++  L K G+  EA  +   + E  GI P +  Y+  + +  K 
Sbjct: 168 VMREAGMSLNGYTYNGLIYFLVKSGFDAEAMEVYKAMVED-GISPSVRTYSVLMVSFGKK 226

Query: 172 HSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLR 231
             +      L+ M++R V  N  +YT  +++          ++I                
Sbjct: 227 RDVDTVLWLLNEMEARGVKPNVYSYTICIRVLGQAARFDEAYQI---------------- 270

Query: 232 KFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKV 291
                  ++ D     + + H V + ++          GRL  ++ D+   + A    K 
Sbjct: 271 -----LGKMEDSGCKPDVVTHTVVIQVL-------CDAGRLSDAK-DVFWKMKASD-QKP 316

Query: 292 LRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVL 351
            R ++  ++  CG + +S    ++   M + G   +  +Y   + A+     L   + V 
Sbjct: 317 DRVTYITLLDKCGDSGDSQSVMEIWNAMVADGYNDNIVSYTAVVDALCQVGRLDEALAVF 376

Query: 352 KIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFS----AFLAACDT 407
             M++  + P+  +  +L     KA   D A  L + ++ C  P P       F+     
Sbjct: 377 DEMKEKGISPEQYSYNSLISGFLKADMFDRALELFNHMNAC-GPSPNGYTHVLFINYYGK 435

Query: 408 MDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVN-------APYEEGNMFSQVDS-- 457
             +  +AI+ +  M+ K + PD+     + S               YE  +M    D+  
Sbjct: 436 SGQSLKAIQRYEHMKSKGIVPDVAAANAVLSSLARSGRLGMAKRVFYELKDMGVSPDTIT 495

Query: 458 --------AKRINAIEM-----DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSK 504
                   +K   A E      DM         +++ +L+  L   G   E  + F   K
Sbjct: 496 YTMMIKCCSKASKADEAMNFFSDMVETGCVPDVLALNSLIDTLYKGGKGNEAWKLFHQLK 555

Query: 505 TPLGTPT---YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFK 561
                PT   YNT+L  L    +    M + ++M     PPN  TYN ++DC S      
Sbjct: 556 EMKIEPTNGTYNTLLSGLGREGKVKEVMHLLEEMTHSIHPPNLITYNTVLDCLSKNGEVN 615

Query: 562 SASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTIL 621
            A  ++  M   G  P   +Y  ++  L+    F+EA  +   +     P D     TIL
Sbjct: 616 CAIGMLYSMTEKGCTPDLSSYNTVMYGLIKEERFEEAFRMFCQMKKILAP-DYATLCTIL 674

Query: 622 KKACEKGRI-DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVN 661
               + G + + +  + E + +     D S+ H +  G +N
Sbjct: 675 PSFVKNGLMKEALHTVKEYILKADCNTDKSSFHSLMEGILN 715



 Score = 54.3 bits (129), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/201 (21%), Positives = 89/201 (44%), Gaps = 7/201 (3%)

Query: 480  MKNLLKA---LGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMK 536
            +  LLKA   + AE +  E+++Y C     +    YN +L+    A  +    +IF++M 
Sbjct: 885  LDGLLKAGKMVDAENLFNEMLEYGCKPNCTI----YNILLNGHRIAGNTENVCQIFEKMV 940

Query: 537  TCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFD 596
              GI P+  +Y ++ID            +    ++  G  P  + Y  LI  L      +
Sbjct: 941  EQGINPDIKSYTVLIDTLCTAGRLNDGLSYFRQLLELGLEPDLIIYNLLIDGLGKSERIE 1000

Query: 597  EALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVF 656
            EA+ L + +  +GI  ++  YN+++    + G+      + E++     +P+  T + + 
Sbjct: 1001 EAVCLFNEMKKKGIVPNLYTYNSLILHLGKAGKASEAAQMYEELLIKGWKPNVFTYNALI 1060

Query: 657  SGYVNCGFHNSAMEALQVLSM 677
             GY   G  ++A  A   +++
Sbjct: 1061 RGYSVSGSTDNAYAAYDCVAV 1081



 Score = 45.4 bits (106), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 74/181 (40%), Gaps = 5/181 (2%)

Query: 475 HSHISMKNLLKALGAEGMIRELIQYFCDSKTPL---GTPTYNTVLHSLVEAQESHRAMEI 531
           H+  S   +L+ + A G + ++ Q F   +  +      T+ TV  S V  Q   R+  +
Sbjct: 106 HTTESCNYMLELMRAHGRVGDMAQVFDLMQKQIVKANVGTFATVF-SGVGVQGGLRSAPV 164

Query: 532 -FKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590
               M+  G+  N  TYN +I           A  +   MV DG  P   TY+ L+    
Sbjct: 165 ALPVMREAGMSLNGYTYNGLIYFLVKSGFDAEAMEVYKAMVEDGISPSVRTYSVLMVSFG 224

Query: 591 DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650
              D D  L LL+ +   G+  +V  Y   ++   +  R D    I+ +M  +  +PD  
Sbjct: 225 KKRDVDTVLWLLNEMEARGVKPNVYSYTICIRVLGQAARFDEAYQILGKMEDSGCKPDVV 284

Query: 651 T 651
           T
Sbjct: 285 T 285


>gi|225447872|ref|XP_002269015.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Vitis vinifera]
          Length = 656

 Score = 89.0 bits (219), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 85/379 (22%), Positives = 159/379 (41%), Gaps = 30/379 (7%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           S++ +IH      N   A +++  M+  G++P S+TY   I  +  +  L     +   M
Sbjct: 286 SYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKM 345

Query: 355 QQNNLKPQDSTIATL-SVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDK 410
            +  L P   T  TL    C+K  +L+ A +  D++ +     +   ++  + A     +
Sbjct: 346 VEIGLVPNAVTYNTLIDGYCNKG-DLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGR 404

Query: 411 PERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
              A  +  +MR+K + PD  TY +L              N +S+  +AK+   +  +M 
Sbjct: 405 MGEADDMIKEMRKKGIIPDAITYNILI-------------NGYSRCGNAKKAFDLHNEML 451

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESH 526
              I+ +H++  +L+  L     ++E   L +   D         +N ++          
Sbjct: 452 SKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVE 511

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRC----FKSASALVSMMVRDGFYPQTMTY 582
           RA  + K+M    +PP+  T+N ++      RC     + A  L+  M R G  P  ++Y
Sbjct: 512 RAFMLLKEMDRKSVPPDEVTFNTLMQG----RCREGKVEEARMLLDEMKRRGIKPDHISY 567

Query: 583 TALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642
             LI      GD  +A  + D +   G    +L YN ++K  C+    D+ E ++++M  
Sbjct: 568 NTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVN 627

Query: 643 NKVQPDPSTCHFVFSGYVN 661
             + PD ST   +  G  N
Sbjct: 628 KGISPDDSTYLSLIEGMGN 646



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 75/370 (20%), Positives = 152/370 (41%), Gaps = 49/370 (13%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           ++F+ +++   +      A + +  M+ LG +P+  +Y+  I    S   +     +L  
Sbjct: 250 YTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDA 309

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLD---QISRCTNPKPFSAFLAACDTMDK 410
           M+   ++P   T  +L     K   L+ A  L D   +I    N   ++  +        
Sbjct: 310 MRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGD 369

Query: 411 PERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
            ERA     +M +K + P + TY LL      V+A + EG M    D             
Sbjct: 370 LERAFSYRDEMVKKGIMPSVSTYNLL------VHALFMEGRMGEADD------------- 410

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAM 529
                        ++K +  +G+I + I             TYN +++       + +A 
Sbjct: 411 -------------MIKEMRKKGIIPDAI-------------TYNILINGYSRCGNAKKAF 444

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
           ++  +M + GI P   TY  +I   S     K A  L   ++  G  P  + + A++   
Sbjct: 445 DLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGH 504

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649
              G+ + A  LL  +  + +P D + +NT+++  C +G+++    ++++M +  ++PD 
Sbjct: 505 CANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDH 564

Query: 650 STCHFVFSGY 659
            + + + SGY
Sbjct: 565 ISYNTLISGY 574



 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 72/275 (26%), Positives = 123/275 (44%), Gaps = 22/275 (8%)

Query: 412 ERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           E A +I   MR K + PD  TY  L S         E   +F   D    I  +   +  
Sbjct: 301 EGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLF---DKMVEIGLVPNAVTY 357

Query: 471 NNIQHSHISMKNLLKALG-AEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAM 529
           N +   + +  +L +A    + M+++ I             TYN ++H+L        A 
Sbjct: 358 NTLIDGYCNKGDLERAFSYRDEMVKKGIMP--------SVSTYNLLVHALFMEGRMGEAD 409

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
           ++ K+M+  GI P+A TYNI+I+  S     K A  L + M+  G  P  +TYT+LI +L
Sbjct: 410 DMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVL 469

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649
                  EA +L + +  +G+  DV+++N ++   C  G ++    ++++M +  V PD 
Sbjct: 470 SRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDE 529

Query: 650 STCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEV 684
            T + +  G    G         +V   RML +E+
Sbjct: 530 VTFNTLMQGRCREG---------KVEEARMLLDEM 555



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 70/153 (45%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           T N +L   ++      A  ++ +M    I     T+NIM++        K A   +  M
Sbjct: 216 TCNDMLSLFLKLNRMEMAWVLYAEMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFM 275

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
              GF P  ++Y  +I      G+ + A  +LD + ++GI  D   Y +++   C++GR+
Sbjct: 276 EGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRL 335

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
           +    + ++M +  + P+  T + +  GY N G
Sbjct: 336 EEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKG 368



 Score = 46.6 bits (109), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 57/262 (21%), Positives = 118/262 (45%), Gaps = 6/262 (2%)

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
           M +K I  +   Y L++ AL   G + EA ++I  + ++ GI P    YN  +   ++  
Sbjct: 380 MVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKK-GIIPDAITYNILINGYSRCG 438

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYSLSIFSLR 231
           +   A    + M S+ +    VTYT L+ +   +  +    +++E  + +  S  +    
Sbjct: 439 NAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFN 498

Query: 232 KFVWSFTRLRDLKSAYETLQHMVALAM-MGKLYINRTSEGRLRSSRL-DIPIPLNALP-- 287
             V       +++ A+  L+ M   ++   ++  N   +GR R  ++ +  + L+ +   
Sbjct: 499 AMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRR 558

Query: 288 VMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNG 347
            +K    S++ +I   GR  +   A ++  +M S+G  P+  TY+  I+ +  ++     
Sbjct: 559 GIKPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLA 618

Query: 348 MEVLKIMQQNNLKPQDSTIATL 369
            E+LK M    + P DST  +L
Sbjct: 619 EELLKEMVNKGISPDDSTYLSL 640


>gi|224130828|ref|XP_002328386.1| predicted protein [Populus trichocarpa]
 gi|222838101|gb|EEE76466.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score = 89.0 bits (219), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 74/362 (20%), Positives = 157/362 (43%), Gaps = 20/362 (5%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           +S + +I+   R  +   A  +M +M  LG+QP + T++  I  + ++  ++  + +   
Sbjct: 132 YSLNVLINCLCRLSHVDFAVSVMGKMFKLGIQPDAITFNTLINGLCNEGKIKEAVGLFNE 191

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKP-- 411
           M  +  +P   +  T+     K     +A  +  ++ +         +    D++ K   
Sbjct: 192 MVWSGHEPNVISYNTVINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTIIDSLCKDRL 251

Query: 412 -ERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
              A++  ++M  + + PD+ TY  +   F ++    E   +F +             M 
Sbjct: 252 VNEAVEFLSEMVDRGIPPDVVTYNTILHGFCSLGQLNEATRLFKE-------------MV 298

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESH 526
             N+    ++   L+  L  EGM+ E   + +   +        TYN ++       +  
Sbjct: 299 GRNVMPDTVTFNILVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYNALMDGYCLHNQMD 358

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
            A+++   M   G  PN ++YNI+I+     +    A  L+S M      P T+TY+ L+
Sbjct: 359 EAIKVLGIMIGKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLM 418

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
           + L   G   EALNL   +   G+  D++ Y+ +L   C+ G +D    ++++MH+ +++
Sbjct: 419 QGLCQVGRPREALNLFKEMCSSGLLPDLMAYSILLDGFCKHGHLDEALKLLKEMHERRIK 478

Query: 647 PD 648
           P+
Sbjct: 479 PN 480



 Score = 76.3 bits (186), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 58/276 (21%), Positives = 115/276 (41%), Gaps = 26/276 (9%)

Query: 414 AIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQ-VDSAKRINAIEMD---- 467
           A+ +  KM +  ++PD  T+  L +   N     E   +F++ V S    N I  +    
Sbjct: 150 AVSVMGKMFKLGIQPDAITFNTLINGLCNEGKIKEAVGLFNEMVWSGHEPNVISYNTVIN 209

Query: 468 -----------------MARNNIQHSHISMKNLLKALGAEGMIRELIQYF---CDSKTPL 507
                            M +N  + + ++   ++ +L  + ++ E +++     D   P 
Sbjct: 210 GLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTIIDSLCKDRLVNEAVEFLSEMVDRGIPP 269

Query: 508 GTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALV 567
              TYNT+LH      + + A  +FK+M    + P+  T+NI++D          A  + 
Sbjct: 270 DVVTYNTILHGFCSLGQLNEATRLFKEMVGRNVMPDTVTFNILVDGLCKEGMVSEARCVS 329

Query: 568 SMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEK 627
             M   G  P   TY AL+     +   DEA+ +L ++  +G   ++  YN ++   C+ 
Sbjct: 330 ETMTEKGAEPNAYTYNALMDGYCLHNQMDEAIKVLGIMIGKGCAPNLSSYNILINGYCKS 389

Query: 628 GRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
            R++  + ++ +M +  + PD  T   +  G    G
Sbjct: 390 KRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVG 425



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 108/510 (21%), Positives = 198/510 (38%), Gaps = 61/510 (11%)

Query: 226 SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLY-INRTSEGRLRSSRLDIPIPLN 284
           S+    KF+ S  + +   SA      M    +   +Y +N       R S +D      
Sbjct: 95  SVVEFGKFLGSIAKKKQYSSAVSLCNQMDLFGVTHNVYSLNVLINCLCRLSHVDF----- 149

Query: 285 ALPVM-KVLRW-------SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIR 336
           A+ VM K+ +        +F+ +I+          A  L  +M   G +P+  +Y+  I 
Sbjct: 150 AVSVMGKMFKLGIQPDAITFNTLINGLCNEGKIKEAVGLFNEMVWSGHEPNVISYNTVIN 209

Query: 337 AIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL-SVECSKALELDLAEALLDQISRCTNP 395
            +  +      + V + M+QN  KP   T  T+    C   L  +  E L + + R   P
Sbjct: 210 GLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTIIDSLCKDRLVNEAVEFLSEMVDRGIPP 269

Query: 396 K--PFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMF 452
               ++  L    ++ +   A ++F +M  + + PD  T+ +L      V+   +EG M 
Sbjct: 270 DVVTYNTILHGFCSLGQLNEATRLFKEMVGRNVMPDTVTFNIL------VDGLCKEG-MV 322

Query: 453 SQVDSAKRINAIEMDMARNNIQHS--------HISMKNLLKALG---AEGMIRELIQY-- 499
           S+          E     N   ++        H  M   +K LG    +G    L  Y  
Sbjct: 323 SEARCVSE-TMTEKGAEPNAYTYNALMDGYCLHNQMDEAIKVLGIMIGKGCAPNLSSYNI 381

Query: 500 ----FCDSK-----------------TPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTC 538
               +C SK                 TP  T TY+T++  L +      A+ +FK+M + 
Sbjct: 382 LINGYCKSKRMNEAKRLLSEMSEKNLTP-DTVTYSTLMQGLCQVGRPREALNLFKEMCSS 440

Query: 539 GIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEA 598
           G+ P+   Y+I++D          A  L+  M      P  + YT LI+ +   G  + A
Sbjct: 441 GLLPDLMAYSILLDGFCKHGHLDEALKLLKEMHERRIKPNIILYTILIRGMFIAGKLEVA 500

Query: 599 LNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
             L   +S +GI  D+  YN ++K   ++G  D       +M  +   PD  + + +  G
Sbjct: 501 KELFSKLSADGIRPDIWTYNVMIKGLLKEGLSDEAYEFFRKMEDDGFLPDSCSYNVIIQG 560

Query: 659 YVNCGFHNSAMEALQVLSMRMLCEEVSTLE 688
           ++     ++A++ +  +  +    + ST +
Sbjct: 561 FLQNQDSSTAIQLIDEMVGKRFSADSSTFQ 590



 Score = 49.3 bits (116), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 93/517 (17%), Positives = 200/517 (38%), Gaps = 90/517 (17%)

Query: 44  MGLNEESISKATQMQIVDALC-RGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPD 102
           +G+  ++I+  T   +++ LC  G+   A  L   +  + H      +  ++N   ++ +
Sbjct: 160 LGIQPDAITFNT---LINGLCNEGKIKEAVGLFNEMVWSGHEPNVISYNTVINGLCKNGN 216

Query: 103 PLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYN 162
            +  +  +R ME+     N   Y  ++ +LCK   + EA   +  + +R GI P +  YN
Sbjct: 217 TIMAVRVFRKMEQNRGKPNVVTYNTIIDSLCKDRLVNEAVEFLSEMVDR-GIPPDVVTYN 275

Query: 163 SFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH 222
           + L     L  +  A      M  R V  + VT+  L+     +  +S    + E     
Sbjct: 276 TILHGFCSLGQLNEATRLFKEMVGRNVMPDTVTFNILVDGLCKEGMVSEARCVSE----- 330

Query: 223 YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIP 282
            +++        +++  L D    +  +   + +                    L I I 
Sbjct: 331 -TMTEKGAEPNAYTYNALMDGYCLHNQMDEAIKV--------------------LGIMIG 369

Query: 283 LNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDR 342
               P +     S++ +I+   +++    A++L+ +M    L P + TY   ++ +    
Sbjct: 370 KGCAPNLS----SYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVG 425

Query: 343 GLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFL 402
             R  + + K M                  CS  L  DL                +S  L
Sbjct: 426 RPREALNLFKEM------------------CSSGLLPDLM--------------AYSILL 453

Query: 403 AACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMF--SQVDSAK 459
                    + A+K+  +M + +++P+I  Y +L               MF   +++ AK
Sbjct: 454 DGFCKHGHLDEALKLLKEMHERRIKPNIILYTILIR------------GMFIAGKLEVAK 501

Query: 460 RI-NAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTV 515
            + + +  D  R +I   ++ +K LLK    EG+  E  ++F   +     P   +YN +
Sbjct: 502 ELFSKLSADGIRPDIWTYNVMIKGLLK----EGLSDEAYEFFRKMEDDGFLPDSCSYNVI 557

Query: 516 LHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID 552
           +   ++ Q+S  A+++  +M       +++T+ +++D
Sbjct: 558 IQGFLQNQDSSTAIQLIDEMVGKRFSADSSTFQMLLD 594


>gi|218184398|gb|EEC66825.1| hypothetical protein OsI_33257 [Oryza sativa Indica Group]
          Length = 948

 Score = 89.0 bits (219), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 84/343 (24%), Positives = 147/343 (42%), Gaps = 20/343 (5%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           F+ VI  C        A +L   M   G QP +HTY   +  +     + + + +L+ M+
Sbjct: 314 FNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRISSAVRLLREME 373

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKPE 412
           +    P   T   +     K    D   ALL+++S      N + ++  + A     + +
Sbjct: 374 KKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMD 433

Query: 413 RAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471
            A+ +  +MR Q   PDI +Y  +     N     E  +MF         N +E  +  N
Sbjct: 434 EAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFE--------NLLEEGVVAN 485

Query: 472 NIQHSHISMKNLLKALGAEGMIR---ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRA 528
            I ++ I +  LL+    +  +R   E+I + C     L   +YN ++ ++ +     R+
Sbjct: 486 GITYNTI-IHALLRDGRWQDAVRLAKEMILHGCS----LDVVSYNGLIKAMCKDGNVDRS 540

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
           + + ++M   GI PN  +YNI+I      R  + A  L   M+  G  P  +TY  LI  
Sbjct: 541 LVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLING 600

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
           L   G    ALNLL+ +  E +  D++ YN ++   C+   +D
Sbjct: 601 LCKMGWMHAALNLLEKLHNENVHPDIITYNILISWHCKVRLLD 643



 Score = 79.0 bits (193), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 85/407 (20%), Positives = 171/407 (42%), Gaps = 29/407 (7%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           +  VIHA         A  L+ +M  +G     +T+D  +R +     +R    ++  M 
Sbjct: 213 YQTVIHALCDQGGVTEAATLLNEMLLMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMM 272

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAI 415
                P   T   L     +  + D A A+L ++    N   F+  +  C    K   A 
Sbjct: 273 TKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPE-LNVVLFNTVIGGCLAEGKLAEAT 331

Query: 416 KIFAKMRQK-LRPDIRTYELL---FSLFGNVNAPY-------EEG------------NMF 452
           +++  M  K  +PD  TY +L       G +++         ++G            + F
Sbjct: 332 ELYETMGLKGCQPDAHTYSILMHGLCKLGRISSAVRLLREMEKKGFAPNVVTYTIVLHSF 391

Query: 453 SQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP-- 510
            +        A+  +M+   +  +      ++ AL  +G + E +    + ++    P  
Sbjct: 392 CKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDI 451

Query: 511 -TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSM 569
            +YNT+++ L   ++   A  +F+ +   G+  N  TYN +I        ++ A  L   
Sbjct: 452 CSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKE 511

Query: 570 MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
           M+  G     ++Y  LIK +   G+ D +L LL+ ++ +GI  + + YN ++ + C++ R
Sbjct: 512 MILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERR 571

Query: 630 I-DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
           + D +E + +QM    + PD  T + + +G    G+ ++A+  L+ L
Sbjct: 572 VRDALE-LSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKL 617



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 65/149 (43%), Gaps = 1/149 (0%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQM-KTCGIPPNAATYNIMIDCCSIIRCFKSASALVSM 569
           +YN VL  L  A     A+ ++++M     +PP   T+ +       +     A AL+  
Sbjct: 141 SYNVVLSVLARADCHADALALYRRMVHRDRVPPTTFTFGVAARALCRLGRANEALALLRG 200

Query: 570 MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
           M R G  P  + Y  +I  L D G   EA  LL+ + L G   DV  ++ +++  C  GR
Sbjct: 201 MARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAADVNTFDDVVRGMCGLGR 260

Query: 630 IDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
           +     ++++M      P   T  F+  G
Sbjct: 261 VREAARLVDRMMTKGCMPGVMTYGFLLQG 289



 Score = 59.7 bits (143), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 59/277 (21%), Positives = 117/277 (42%), Gaps = 17/277 (6%)

Query: 413 RAIKIFAKM--RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           RA+ +  ++  R  ++P  R+Y ++ S+    +   +   ++ ++    R+         
Sbjct: 121 RALHLLDQLPRRFGVQPSFRSYNVVLSVLARADCHADALALYRRMVHRDRVPPTTFTFGV 180

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAME 530
                +  ++  L +A  A  ++R + ++ C     L    Y TV+H+L +      A  
Sbjct: 181 -----AARALCRLGRANEALALLRGMARHGCVPDAVL----YQTVIHALCDQGGVTEAAT 231

Query: 531 IFKQMKTCGIPPNAATYNIMI-DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
           +  +M   G   +  T++ ++   C + R  + A+ LV  M+  G  P  MTY  L++ L
Sbjct: 232 LLNEMLLMGCAADVNTFDDVVRGMCGLGR-VREAARLVDRMMTKGCMPGVMTYGFLLQGL 290

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649
                 DEA  +L  V       +V+L+NT++     +G++     + E M     QPD 
Sbjct: 291 CRVRQADEARAMLGRVP----ELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDA 346

Query: 650 STCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
            T   +  G    G  +SA+  L+ +  +     V T
Sbjct: 347 HTYSILMHGLCKLGRISSAVRLLREMEKKGFAPNVVT 383



 Score = 39.3 bits (90), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 96/445 (21%), Positives = 161/445 (36%), Gaps = 59/445 (13%)

Query: 32  NKLELSRTLTTTMGLNEESISKATQMQIVDALCR-GERSRASHLLLNL---GHAHHSLGA 87
            KL  +  L  TMGL        T   ++  LC+ G  S A  LL  +   G A + +  
Sbjct: 325 GKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRISSAVRLLREMEKKGFAPNVVTY 384

Query: 88  DDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYF 147
               H         D   ++E    M  K + LN++ Y  M+ ALCK G ++EA  LI  
Sbjct: 385 TIVLHSFCKNGMWDDTRALLEE---MSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQE 441

Query: 148 LGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYT----ELLKLA 203
           +  + G  P +  YN+ +        M  A    + +    V  N +TY      LL+  
Sbjct: 442 MRSQ-GCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDG 500

Query: 204 VWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLY 263
            WQ    AV    E  +   SL + S    + +  +  ++  +   L+ M          
Sbjct: 501 RWQ---DAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEM---------- 547

Query: 264 INRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLG 323
               +E  ++ + +                 S++ +I    + +    A +L  QM + G
Sbjct: 548 ----AEKGIKPNNV-----------------SYNILISELCKERRVRDALELSKQMLNQG 586

Query: 324 LQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAE 383
           L P   TY+  I  +     +   + +L+ +   N+ P   T   L     K   LD A 
Sbjct: 587 LAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILISWHCKVRLLDDAA 646

Query: 384 ALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVN 443
            LL++           A  A C   D+  R ++I      KL    +   L  S      
Sbjct: 647 MLLNR-----------AMAAVCPVGDR--RIMQILPDKNFKLYLHTKDSYLYCSRANECK 693

Query: 444 APYEEGNMFSQVDSAKRINAIEMDM 468
           A        S +DSA ++  + + +
Sbjct: 694 ANILLEQSTSFIDSAPKVGGVSLSI 718


>gi|302767038|ref|XP_002966939.1| hypothetical protein SELMODRAFT_30641 [Selaginella moellendorffii]
 gi|300164930|gb|EFJ31538.1| hypothetical protein SELMODRAFT_30641 [Selaginella moellendorffii]
          Length = 506

 Score = 89.0 bits (219), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 125/533 (23%), Positives = 215/533 (40%), Gaps = 60/533 (11%)

Query: 121 NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFL-GACAKLHSMVHANL 179
           N   Y  +M ALCK G L++A  L   +       P    Y + + G C K+  +  A L
Sbjct: 3   NVYTYNTVMSALCKAGRLDQAHRLFGVMLASDSTPPNAITYRALIHGLCLKME-LERAVL 61

Query: 180 CLDLMDSRMVGKNEVTYTEL-LKLAVWQKNLSAVHEIWEDYIKHYS-LSIFSLRKFVWSF 237
            LD +  ++      TY  +  K    + NL A  E+ +D  ++ S LSI  L   +   
Sbjct: 62  LLDAVYFKLSWLVPATYLIIRFKACHERGNLRATIELLKDMAENGSTLSIQDLNGCLRGL 121

Query: 238 TRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFS 297
            +  ++  A E  +                +   LR+S     I + AL   K       
Sbjct: 122 CKAGNVDGALEFFREA-------------KNSFSLRASVSTYSILVAALTAAK------- 161

Query: 298 DVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQN 357
                    +N+ + E ++ +M+S+GL+    TY   I ++     +     +++ M   
Sbjct: 162 ---------RNNDVYE-ILREMESVGLEADKDTYSLIIHSLCKSGMVDKAKVLVERMISR 211

Query: 358 NLKPQDSTIATLSVECSKALELDLAEALLDQI--SRCTNPKPFSAFLAACDTMDKPERAI 415
           N  P       +  E SK   +D A  +  +     CT+   +++ +       + +R I
Sbjct: 212 NCVPDARIYDPVIEELSKTGRVDEAVEIAKEADAKHCTSVVTYNSLVLGFLKARRLKRGI 271

Query: 416 KIFAKM-RQKLRPDIRTYELLF---SLFGNVNAPYE---EGNMFSQVDSAKRINAIEMDM 468
           K+F +M R    PDI TY +LF   S  G     Y+     N    +  A   N++   +
Sbjct: 272 KVFTRMARTGPSPDIYTYNILFEGLSRHGLWRFAYKLLPRMNQDGVLPDAVTFNSLINGL 331

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRA 528
             +N  H  +++            I+E++   CD        TY  +L  L     +   
Sbjct: 332 VEDNRYHRAVTL------------IQEMVSRGCDPNAI----TYTILLKWLARNARADEC 375

Query: 529 MEIFKQMKTCGIPPNAATYN-IMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           +E+F+++    + PN  TYN +M   C   R  ++      M+  D   P  +TY ALI 
Sbjct: 376 VELFQRLLDRKLAPNVYTYNTVMSALCKAGRLDQAHRLFGVMLASDCTPPNAITYRALIH 435

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQM 640
            L    + + A+ LLD ++      DV  Y TI+   C++GRID    ++E+M
Sbjct: 436 GLCLKMELERAVLLLDAMAKRDCAPDVACYGTIVAAFCKQGRIDEAFELLERM 488



 Score = 70.9 bits (172), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 80/351 (22%), Positives = 152/351 (43%), Gaps = 37/351 (10%)

Query: 341 DRG-LRNGMEVLKIMQQNNLKPQDSTIATLSVE----CSKAL--------ELDLAEALLD 387
           +RG LR  +E+LK M +N         +TLS++    C + L         L+      +
Sbjct: 88  ERGNLRATIELLKDMAENG--------STLSIQDLNGCLRGLCKAGNVDGALEFFREAKN 139

Query: 388 QISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPY 446
             S   +   +S  +AA     +     +I  +M    L  D  TY L+      +++  
Sbjct: 140 SFSLRASVSTYSILVAALTAAKRNNDVYEILREMESVGLEADKDTYSLI------IHSLC 193

Query: 447 EEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYF--CDSK 504
           + G     VD AK +  +E  ++RN +  + I    +++ L   G + E ++     D+K
Sbjct: 194 KSG----MVDKAKVL--VERMISRNCVPDARI-YDPVIEELSKTGRVDEAVEIAKEADAK 246

Query: 505 TPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSAS 564
                 TYN+++   ++A+   R +++F +M   G  P+  TYNI+ +  S    ++ A 
Sbjct: 247 HCTSVVTYNSLVLGFLKARRLKRGIKVFTRMARTGPSPDIYTYNILFEGLSRHGLWRFAY 306

Query: 565 ALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKA 624
            L+  M +DG  P  +T+ +LI  L++   +  A+ L+  +   G   + + Y  +LK  
Sbjct: 307 KLLPRMNQDGVLPDAVTFNSLINGLVEDNRYHRAVTLIQEMVSRGCDPNAITYTILLKWL 366

Query: 625 CEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
               R D    + +++   K+ P+  T + V S     G  + A     V+
Sbjct: 367 ARNARADECVELFQRLLDRKLAPNVYTYNTVMSALCKAGRLDQAHRLFGVM 417



 Score = 43.1 bits (100), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 42/177 (23%), Positives = 71/177 (40%), Gaps = 5/177 (2%)

Query: 512 YNTVLHSLVEAQESHRAMEIFKQM--KTCGIPPNAATYNIMIDCCSIIRCFKSASALVSM 569
           Y+ V+  L +      A+EI K+   K C    +  TYN ++      R  K    + + 
Sbjct: 220 YDPVIEELSKTGRVDEAVEIAKEADAKHC---TSVVTYNSLVLGFLKARRLKRGIKVFTR 276

Query: 570 MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
           M R G  P   TY  L + L  +G +  A  LL  ++ +G+  D + +N+++    E  R
Sbjct: 277 MARTGPSPDIYTYNILFEGLSRHGLWRFAYKLLPRMNQDGVLPDAVTFNSLINGLVEDNR 336

Query: 630 IDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
                 +I++M      P+  T   +          +  +E  Q L  R L   V T
Sbjct: 337 YHRAVTLIQEMVSRGCDPNAITYTILLKWLARNARADECVELFQRLLDRKLAPNVYT 393


>gi|168036356|ref|XP_001770673.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162678034|gb|EDQ64497.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 717

 Score = 89.0 bits (219), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 91/382 (23%), Positives = 162/382 (42%), Gaps = 44/382 (11%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIR--AIVSDRGLRNGMEVLK 352
           +F+  ++AC     +   E LM  M+  GLQP S T++  I+  A    R L   +    
Sbjct: 249 AFNAALNACATLGFAAKGEDLMNSMRRCGLQPDSITFNTLIKLYAKCDQRKLLKSLP--D 306

Query: 353 IMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPE 412
            M +N + P +ST+ +L        +L  AEALL ++                   DK E
Sbjct: 307 EMVENKVMPDESTVNSLIAGYVGLGDLREAEALLRRL------------------QDKSE 348

Query: 413 RAIKIFAKMRQ----KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
           +      K +      LRPD+RTY  L   +       ++G    + D+ + + A++MD 
Sbjct: 349 QGNDSKTKSKSWWGAHLRPDVRTYTTLMKGY------VQKGR---RSDAMRTLLAMQMDK 399

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQES 525
              +   + +S    + +    G++ E   ++Q       P+   TYN +L     A++ 
Sbjct: 400 DPRS-SPNEVSYTTAISSCVRLGLMDEATVVLQEMLKHNIPVNVITYNILLKGYCSARKL 458

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASAL--VSMMVRDGFYPQTMTYT 583
            +A  + K M+  G+  +  +YN +I+ C  I    +A+AL     M   G  P  ++YT
Sbjct: 459 QKAHSVVKDMEEAGVALDVVSYNTLINGC--IETGDNAAALDYFKKMRETGISPSAVSYT 516

Query: 584 ALIKILLDYGDFDEA-LNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642
            L+K     G   +  L   ++ +   +  D + +N +L   C  GR+   + +  QM +
Sbjct: 517 TLMKAFGRNGQPKQVHLVFEEMRNDPRMKTDAVAWNVLLDSYCRNGRVADAKRMFLQMKE 576

Query: 643 NKVQPDPSTCHFVFSGYVNCGF 664
           ++V P   T   +  GY   G 
Sbjct: 577 DRVLPTAFTYATLVKGYALGGM 598



 Score = 46.6 bits (109), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 60/294 (20%), Positives = 112/294 (38%), Gaps = 66/294 (22%)

Query: 398 FSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVD 456
           F+A L AC T+    +   +   MR+  L+PD  T+  L  L+             ++ D
Sbjct: 250 FNAALNACATLGFAAKGEDLMNSMRRCGLQPDSITFNTLIKLY-------------AKCD 296

Query: 457 SAKRINAIEMDMARNNIQHSHISMKNLLKA---LG----AEGMIREL---IQYFCDSKTP 506
             K + ++  +M  N +     ++ +L+     LG    AE ++R L    +   DSKT 
Sbjct: 297 QRKLLKSLPDEMVENKVMPDESTVNSLIAGYVGLGDLREAEALLRRLQDKSEQGNDSKTK 356

Query: 507 LGT----------PTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSI 556
             +           TY T++   V+      AM     M+    P ++            
Sbjct: 357 SKSWWGAHLRPDVRTYTTLMKGYVQKGRRSDAMRTLLAMQMDKDPRSS------------ 404

Query: 557 IRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLL 616
                               P  ++YT  I   +  G  DEA  +L  +    IP +V+ 
Sbjct: 405 --------------------PNEVSYTTAISSCVRLGLMDEATVVLQEMLKHNIPVNVIT 444

Query: 617 YNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAME 670
           YN +LK  C   ++     +++ M +  V  D  + + + +G +  G + +A++
Sbjct: 445 YNILLKGYCSARKLQKAHSVVKDMEEAGVALDVVSYNTLINGCIETGDNAAALD 498



 Score = 45.1 bits (105), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 77/185 (41%), Gaps = 20/185 (10%)

Query: 509 TPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVS 568
           T  +N  L++      + +  ++   M+ CG+ P++ T+N +I   +     K   +L  
Sbjct: 247 TGAFNAALNACATLGFAAKGEDLMNSMRRCGLQPDSITFNTLIKLYAKCDQRKLLKSLPD 306

Query: 569 MMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLV---SLEG--------------IP 611
            MV +   P   T  +LI   +  GD  EA  LL  +   S +G              + 
Sbjct: 307 EMVENKVMPDESTVNSLIAGYVGLGDLREAEALLRRLQDKSEQGNDSKTKSKSWWGAHLR 366

Query: 612 HDVLLYNTILKKACEKG-RIDVIEFIIE-QMHQN-KVQPDPSTCHFVFSGYVNCGFHNSA 668
            DV  Y T++K   +KG R D +  ++  QM ++ +  P+  +     S  V  G  + A
Sbjct: 367 PDVRTYTTLMKGYVQKGRRSDAMRTLLAMQMDKDPRSSPNEVSYTTAISSCVRLGLMDEA 426

Query: 669 MEALQ 673
              LQ
Sbjct: 427 TVVLQ 431



 Score = 41.6 bits (96), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 22/87 (25%), Positives = 46/87 (52%)

Query: 577 PQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFI 636
           P T  + A +      G   +  +L++ +   G+  D + +NT++K   +  +  +++ +
Sbjct: 245 PDTGAFNAALNACATLGFAAKGEDLMNSMRRCGLQPDSITFNTLIKLYAKCDQRKLLKSL 304

Query: 637 IEQMHQNKVQPDPSTCHFVFSGYVNCG 663
            ++M +NKV PD ST + + +GYV  G
Sbjct: 305 PDEMVENKVMPDESTVNSLIAGYVGLG 331


>gi|449495714|ref|XP_004159923.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Cucumis sativus]
          Length = 749

 Score = 89.0 bits (219), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 85/371 (22%), Positives = 155/371 (41%), Gaps = 21/371 (5%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIV-SDRGLRNGMEVLKIM 354
           F  V+ +C R      A  ++   +S G  P   +Y+  + A++ + + ++    + K M
Sbjct: 135 FDLVVKSCARVNLINKALSIVNLAKSYGFMPGVLSYNAILDAVIRTKQSVKIAEGIFKEM 194

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKP 411
            ++ + P   T   L      A  L++      ++ R     N   ++  + A   + K 
Sbjct: 195 VESGVSPNVYTYNILIRGFCTAGNLEMGLXFFGEMERNGCLPNVVTYNTIIDAYCKLRKI 254

Query: 412 ERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
             A K+   M  K L P++ +Y ++      +N    EG M       K  + I  +M++
Sbjct: 255 GEAFKLLRLMALKGLNPNLISYNVV------INGLCREGQM-------KETSEILEEMSK 301

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHR 527
                  ++   L+      G   + +    +      +P   TY T+++S+ +A   +R
Sbjct: 302 RRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNR 361

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           AME   QM+  G+ PN  TY  +ID  S     K A  ++  MV +GF P  +TY ALI 
Sbjct: 362 AMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALIN 421

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
                G  ++A  LL  +   G   DV+ Y+TI+   C    ++    +  +M    + P
Sbjct: 422 GHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISP 481

Query: 648 DPSTCHFVFSG 658
           D +T   +  G
Sbjct: 482 DVATYSSLIQG 492



 Score = 85.9 bits (211), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 79/373 (21%), Positives = 166/373 (44%), Gaps = 21/373 (5%)

Query: 295 SFSDVIHACGRTQNS-GLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           S++ ++ A  RT+ S  +AE +  +M   G+ P+ +TY+  IR   +   L  G+     
Sbjct: 169 SYNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLXFFGE 228

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQIS-RCTNPK--PFSAFLAACDTMDK 410
           M++N   P   T  T+     K  ++  A  LL  ++ +  NP    ++  +       +
Sbjct: 229 MERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQ 288

Query: 411 PERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
            +   +I  +M +++  PD  T+  L + + NV      GN    +        +  +M 
Sbjct: 289 MKETSEILEEMSKRRYVPDRVTFNTLINGYCNV------GNFHQAL-------VLHAEMV 335

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESH 526
           +N +  + ++   L+ ++   G +   +++    +     P   TY T++    +     
Sbjct: 336 KNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLK 395

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
           +A +I K+M   G  P   TYN +I+   I+   + AS L+  M+  GF P  ++Y+ +I
Sbjct: 396 QAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTII 455

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
                  + ++A  L   +  +GI  DV  Y+++++  C++ R+  +  + ++M    + 
Sbjct: 456 SGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLP 515

Query: 647 PDPSTCHFVFSGY 659
           PD  T   + + Y
Sbjct: 516 PDEVTYTSLINAY 528



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 96/229 (41%), Gaps = 6/229 (2%)

Query: 452 FSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPT 511
            S V+ AK    +   ++ N I  + I  K  +K   AEG+ +E+++    S       T
Sbjct: 152 LSIVNLAKSYGFMPGVLSYNAILDAVIRTKQSVKI--AEGIFKEMVE----SGVSPNVYT 205

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           YN ++     A      +  F +M+  G  PN  TYN +ID    +R    A  L+ +M 
Sbjct: 206 YNILIRGFCTAGNLEMGLXFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMA 265

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
             G  P  ++Y  +I  L   G   E   +L+ +S      D + +NT++   C  G   
Sbjct: 266 LKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFH 325

Query: 632 VIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRML 680
               +  +M +N + P+  T   + +     G  N AME L  +  R L
Sbjct: 326 QALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGL 374



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 69/309 (22%), Positives = 133/309 (43%), Gaps = 33/309 (10%)

Query: 400 AFLAACDTMDKPERAIKI----FAKMRQK-LRPDIRTYELLFSLF---GNVNAPYEEGNM 451
           ++ A  D + + ++++KI    F +M +  + P++ TY +L   F   GN+    E G  
Sbjct: 169 SYNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTAGNL----EMGLX 224

Query: 452 FSQVDSAKRINAIEMDMARNNIQHSHISMKN------LLKALGAEGMIRELIQYFCDSKT 505
           F      +R   +   +  N I  ++  ++       LL+ +  +G+   LI        
Sbjct: 225 F--FGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLI-------- 274

Query: 506 PLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASA 565
                +YN V++ L    +     EI ++M      P+  T+N +I+    +  F  A  
Sbjct: 275 -----SYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALV 329

Query: 566 LVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKAC 625
           L + MV++G  P  +TYT LI  +   G+ + A+  LD +   G+  +   Y T++    
Sbjct: 330 LHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFS 389

Query: 626 EKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVS 685
           ++G +     I+++M +N   P   T + + +G+   G    A   LQ +  R    +V 
Sbjct: 390 QQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVV 449

Query: 686 TLEEKRSDF 694
           +     S F
Sbjct: 450 SYSTIISGF 458



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 119/554 (21%), Positives = 208/554 (37%), Gaps = 85/554 (15%)

Query: 111 RMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAK 170
           R+M  K +  N   Y +++  LC+ G ++E S ++  + +R  + P    +N+ +     
Sbjct: 262 RLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYV-PDRVTFNTLINGYCN 320

Query: 171 LHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWE---DYIKHYSLSI 227
           + +   A +    M    +  N VTYT L+       NL+   E  +   D   H +   
Sbjct: 321 VGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRT 380

Query: 228 FSLRKFVWSFTRLRDLKSAYETLQHMV------ALAMMGKLYINRTSEGRLR--SSRLDI 279
           ++    +  F++   LK AY+ ++ MV       +     L       GR+   S  L  
Sbjct: 381 YT--TLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQE 438

Query: 280 PIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIV 339
            I    +P +     S+S +I    R Q    A QL ++M + G+ P   TY   I+ + 
Sbjct: 439 MIERGFIPDV----VSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLC 494

Query: 340 SDRGLRNGMEVLKIMQQNNLKPQDSTIATL-SVECSKALELDLAEALLDQISRCTNPKPF 398
             R L    ++ + M    L P + T  +L +  C   +E DL                 
Sbjct: 495 KQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYC---IEGDL----------------- 534

Query: 399 SAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDS 457
                        ++A+++  +M QK   PDI TY +L + F          N  S+   
Sbjct: 535 -------------DKALRLHDEMIQKGFSPDIVTYNVLINGF----------NKQSRTKE 571

Query: 458 AKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELI-QYFCDSKTPLGTPTYNTVL 516
           AKR+                     LLK L  E +  E+      D+   L   +   ++
Sbjct: 572 AKRL---------------------LLKLLYEESVPNEITYNTLIDNCNNLEFKSALALM 610

Query: 517 HSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFY 576
                    + A  + + M   G   N   YN++I   S +   + A  L   M+  GF 
Sbjct: 611 KGFCMKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHSGFA 670

Query: 577 PQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFI 636
           P ++T  AL K L   G   E   LLD         +  L   ++    ++G +D +  +
Sbjct: 671 PHSVTIMALAKSLYHEGKEVELNQLLDYTLKSCRITEAALAKVLIGINSKEGNMDAVFNV 730

Query: 637 IEQMHQNKVQPDPS 650
           ++ M  + + P  S
Sbjct: 731 LKDMALSGLLPYSS 744


>gi|255561943|ref|XP_002521980.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538784|gb|EEF40384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 584

 Score = 89.0 bits (219), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 108/488 (22%), Positives = 197/488 (40%), Gaps = 65/488 (13%)

Query: 197 TELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVAL 256
           T+L+K     +N+     + E   ++    +F+    +  F +   L++A   L  M + 
Sbjct: 108 TKLIKGFFNSRNIGKATRVMEILERYGKPDVFAYNALISGFIKANQLENANRVLDRMKSR 167

Query: 257 AMMGKLYINRTSEGRLRS-SRLDIPIPL-------NALPVMKVLRWSFSDVIHACGRTQN 308
             +  +       G   S  +LD+ + +       N  P +     +++ +I A      
Sbjct: 168 GFLPDVVTYNIMIGSFCSRGKLDLALEIFEELLKDNCEPTV----ITYTILIEATILDGG 223

Query: 309 SGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIAT 368
             +A +L+ +M S GL+P + TY+  IR +  +  +    E+L+ +     KP   T   
Sbjct: 224 IDVAMKLLDEMLSKGLEPDTLTYNAIIRGMCKEMMVDKAFELLRSLSSRGCKPDIITYNI 283

Query: 369 LSVECSKALELDLAEALLDQ-ISRCTNPK--PFSAFLAACDTMDKPERAIKIFAKMRQK- 424
           L        +    E L+ + IS    P     S  +       K E A+ +   M++K 
Sbjct: 284 LLRTLLSRGKWSEGEKLISEMISIGCKPNVVTHSILIGTLCRDGKVEEAVNLLRSMKEKG 343

Query: 425 LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLL 484
           L+PD   Y+ L + F        EG                +D+A              L
Sbjct: 344 LKPDAYCYDPLIAGF------CREG---------------RLDLA-----------TEFL 371

Query: 485 KALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNA 544
           + + ++G + +++ Y             NT++  L    ++ +A+E+F+++   G PPN 
Sbjct: 372 EYMISDGCLPDIVNY-------------NTIMAGLCRTGKADQALEVFEKLDEVGCPPNV 418

Query: 545 ATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL-D 603
           ++YN +            A  ++  ++  G  P  +TY +LI  L   G  DEA+ LL D
Sbjct: 419 SSYNTLFSALWSSGDRYRALEMILKLLNQGIDPDEITYNSLISCLCRDGMVDEAIELLVD 478

Query: 604 LVSLEGIPHDVLLYNTILKKACEKGRI-DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNC 662
           + S    P+ V+ YN IL   C+  R  D IE ++  M +   QP+ +T   +  G    
Sbjct: 479 MQSGRYRPN-VVSYNIILLGLCKVNRANDAIE-VLAAMTEKGCQPNETTYILLIEGIGFS 536

Query: 663 GFHNSAME 670
           G    AME
Sbjct: 537 GLRAEAME 544



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/300 (22%), Positives = 135/300 (45%), Gaps = 19/300 (6%)

Query: 382 AEALLDQISRCTNPKPFS--AFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSL 438
           A  +++ + R   P  F+  A ++     ++ E A ++  +M+ +   PD+ TY ++   
Sbjct: 123 ATRVMEILERYGKPDVFAYNALISGFIKANQLENANRVLDRMKSRGFLPDVVTYNIMIGS 182

Query: 439 FGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIR---E 495
           F +            ++D A  I     ++ ++N + + I+   L++A   +G I    +
Sbjct: 183 FCSR----------GKLDLALEIFE---ELLKDNCEPTVITYTILIEATILDGGIDVAMK 229

Query: 496 LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCS 555
           L+           T TYN ++  + +     +A E+ + + + G  P+  TYNI++    
Sbjct: 230 LLDEMLSKGLEPDTLTYNAIIRGMCKEMMVDKAFELLRSLSSRGCKPDIITYNILLRTLL 289

Query: 556 IIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVL 615
               +     L+S M+  G  P  +T++ LI  L   G  +EA+NLL  +  +G+  D  
Sbjct: 290 SRGKWSEGEKLISEMISIGCKPNVVTHSILIGTLCRDGKVEEAVNLLRSMKEKGLKPDAY 349

Query: 616 LYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
            Y+ ++   C +GR+D+    +E M  +   PD    + + +G    G  + A+E  + L
Sbjct: 350 CYDPLIAGFCREGRLDLATEFLEYMISDGCLPDIVNYNTIMAGLCRTGKADQALEVFEKL 409



 Score = 70.1 bits (170), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 83/373 (22%), Positives = 147/373 (39%), Gaps = 54/373 (14%)

Query: 306 TQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDST 365
           ++N G A ++M  ++  G +P    Y+  I   +    L N   VL  M+     P   T
Sbjct: 117 SRNIGKATRVMEILERYG-KPDVFAYNALISGFIKANQLENANRVLDRMKSRGFLPDVVT 175

Query: 366 IATL-SVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDKPERAIKIFAK 420
              +    CS+  +LDLA  + +++ +  N +P    ++  + A       + A+K+  +
Sbjct: 176 YNIMIGSFCSRG-KLDLALEIFEELLK-DNCEPTVITYTILIEATILDGGIDVAMKLLDE 233

Query: 421 MRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHIS 479
           M  K L PD  TY                             NAI   M +  +      
Sbjct: 234 MLSKGLEPDTLTY-----------------------------NAIIRGMCKEMMVDKAFE 264

Query: 480 MKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCG 539
              LL++L + G   ++I             TYN +L +L+   +     ++  +M + G
Sbjct: 265 ---LLRSLSSRGCKPDII-------------TYNILLRTLLSRGKWSEGEKLISEMISIG 308

Query: 540 IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEAL 599
             PN  T++I+I         + A  L+  M   G  P    Y  LI      G  D A 
Sbjct: 309 CKPNVVTHSILIGTLCRDGKVEEAVNLLRSMKEKGLKPDAYCYDPLIAGFCREGRLDLAT 368

Query: 600 NLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
             L+ +  +G   D++ YNTI+   C  G+ D    + E++ +    P+ S+ + +FS  
Sbjct: 369 EFLEYMISDGCLPDIVNYNTIMAGLCRTGKADQALEVFEKLDEVGCPPNVSSYNTLFSAL 428

Query: 660 VNCGFHNSAMEAL 672
            + G    A+E +
Sbjct: 429 WSSGDRYRALEMI 441



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 68/155 (43%), Gaps = 4/155 (2%)

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
           ++ R MEI ++       P+   YN +I         ++A+ ++  M   GF P  +TY 
Sbjct: 122 KATRVMEILERYGK----PDVFAYNALISGFIKANQLENANRVLDRMKSRGFLPDVVTYN 177

Query: 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
            +I      G  D AL + + +  +     V+ Y  +++     G IDV   ++++M   
Sbjct: 178 IMIGSFCSRGKLDLALEIFEELLKDNCEPTVITYTILIEATILDGGIDVAMKLLDEMLSK 237

Query: 644 KVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678
            ++PD  T + +  G       + A E L+ LS R
Sbjct: 238 GLEPDTLTYNAIIRGMCKEMMVDKAFELLRSLSSR 272


>gi|414872431|tpg|DAA50988.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
          Length = 1627

 Score = 89.0 bits (219), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 99/432 (22%), Positives = 171/432 (39%), Gaps = 61/432 (14%)

Query: 287  PVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRN 346
            P+  V     SDV+   G  +    A  +  Q+++   QP +  Y+  I  ++ +     
Sbjct: 1143 PICVVTPTELSDVVRMLGNAKMVRQAITIFYQIKTRKCQPIAQAYNSMIIMLMHEGQYEK 1202

Query: 347  GMEVLKIMQ-QNNLKPQDSTIATLSVECSKALELDLAEALLDQ---ISRCTNPKPFSAFL 402
              ++   M  + +  P   T + L     K    D A  LL++   I      K ++  +
Sbjct: 1203 VHQLYNEMSTEGHCFPDTVTYSALISAFCKLGRRDSAIQLLNEMKEIGMQPTTKIYTMLI 1262

Query: 403  AACDTMDKPERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI 461
            A     +    A+ +F +MR Q  RPD+ TY  L    G      E  + F +       
Sbjct: 1263 ALFFKFNDAHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFCE------- 1315

Query: 462  NAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHS 518
                  M R   +   + M N++  LG  G + + ++ F + +T    P   TYNT++ +
Sbjct: 1316 ------MQREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKA 1369

Query: 519  LVEAQESHRAMEI---FKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGF 575
            L E++   RA E+   F++MK  GI P++ TY+I+ID        + A  L+  M   GF
Sbjct: 1370 LFESKS--RASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGF 1427

Query: 576  YP-----------------------------------QTMTYTALIKILLDYGDFDEALN 600
             P                                       Y  +IK L   G  D+A+N
Sbjct: 1428 PPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAIN 1487

Query: 601  LLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYV 660
            + D ++  G   DV  YN ++      G +D     + +M ++   PD ++ + + +G  
Sbjct: 1488 MFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLA 1547

Query: 661  NCGFHNSAMEAL 672
              G  + AME L
Sbjct: 1548 KTGGPHRAMEML 1559



 Score = 62.8 bits (151), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 64/299 (21%), Positives = 134/299 (44%), Gaps = 15/299 (5%)

Query: 296  FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEV-LKIM 354
             +++I+  G+      A +L  +M++L   PS  TY+  I+A+   +   + +    + M
Sbjct: 1328 MNNMINFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKALFESKSRASEVPSWFERM 1387

Query: 355  QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPER- 413
            +++ + P   T + L     K   ++ A  LL+++     P   +A+ +  D + K +R 
Sbjct: 1388 KESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRY 1447

Query: 414  --AIKIFAKMRQKL-RPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
              A ++F ++++       R Y ++    G      +  NMF +++          D+  
Sbjct: 1448 DLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKL----GCAPDVYA 1503

Query: 471  NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAME 530
             N   S ++   +L    A   +R + ++ C         +YN +L+ L +    HRAME
Sbjct: 1504 YNALMSGLARTGMLDE--ALSTMRRMQEHGCIPDIN----SYNIILNGLAKTGGPHRAME 1557

Query: 531  IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
            +   MK   + P+  +YN ++   S    F+ AS L+  M   GF    +TY+++++ +
Sbjct: 1558 MLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEASKLMKEMNTLGFEYDLITYSSILEAI 1616



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 86/187 (45%), Gaps = 5/187 (2%)

Query: 467  DMARNNI-QHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEA 522
            +M RN I   +   + ++++ LG   M+R+ I  F   KT    P    YN+++  L+  
Sbjct: 1138 EMVRNPICVVTPTELSDVVRMLGNAKMVRQAITIFYQIKTRKCQPIAQAYNSMIIMLMHE 1197

Query: 523  QESHRAMEIFKQMKTCG-IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMT 581
             +  +  +++ +M T G   P+  TY+ +I     +    SA  L++ M   G  P T  
Sbjct: 1198 GQYEKVHQLYNEMSTEGHCFPDTVTYSALISAFCKLGRRDSAIQLLNEMKEIGMQPTTKI 1257

Query: 582  YTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMH 641
            YT LI +   + D   AL+L + +  +    DV  Y  +++   + GRID       +M 
Sbjct: 1258 YTMLIALFFKFNDAHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQ 1317

Query: 642  QNKVQPD 648
            +   +PD
Sbjct: 1318 REGCRPD 1324



 Score = 49.7 bits (117), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 77/381 (20%), Positives = 146/381 (38%), Gaps = 38/381 (9%)

Query: 295  SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
            ++S +I A  +      A QL+ +M+ +G+QP++  Y   I            + + + M
Sbjct: 1222 TYSALISAFCKLGRRDSAIQLLNEMKEIGMQPTTKIYTMLIALFFKFNDAHGALSLFEEM 1281

Query: 355  QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR--CTNPKPFSA----FLAACDTM 408
            +    +P   T   L     KA  +D A     ++ R  C     F      FL     +
Sbjct: 1282 RHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGRL 1341

Query: 409  DKPERAIKIFAKMRQKLR--PDIRTYELLF-SLFGNVNAPYEEGNMFSQ----------- 454
            D    A+K+F +M + LR  P + TY  +  +LF + +   E  + F +           
Sbjct: 1342 DD---AMKLFQEM-ETLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSF 1397

Query: 455  -----VDSAKRINAIEM------DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDS 503
                 +D   + N +E       +M          +  +L+ ALG         + F + 
Sbjct: 1398 TYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQEL 1457

Query: 504  KTPLGTPT---YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCF 560
            K   G+ +   Y  ++  L +A     A+ +F +M   G  P+   YN ++   +     
Sbjct: 1458 KENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGML 1517

Query: 561  KSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTI 620
              A + +  M   G  P   +Y  ++  L   G    A+ +L  +    +  DV+ YNT+
Sbjct: 1518 DEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTV 1577

Query: 621  LKKACEKGRIDVIEFIIEQMH 641
            L      G  +    ++++M+
Sbjct: 1578 LGALSHAGMFEEASKLMKEMN 1598


>gi|218195055|gb|EEC77482.1| hypothetical protein OsI_16315 [Oryza sativa Indica Group]
          Length = 455

 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 88/384 (22%), Positives = 168/384 (43%), Gaps = 61/384 (15%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQ-NNLKPQDSTIATLS 370
           A +L+ QM     +P++ TY+  I    S   ++  +++++ M++   + P   T  T+ 
Sbjct: 60  ALELLRQMP----RPNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVI 115

Query: 371 VECSKALELDLAEALLDQISRCTNPKP----FSAFLAA-CDT------------------ 407
               K   +D A  + D++      KP    ++A +   CD                   
Sbjct: 116 SGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGV 175

Query: 408 ---------------MD-KPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGN 450
                          MD +   A ++  +M  K L PD+ TY +L      +N   +EGN
Sbjct: 176 AMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNIL------INGHCKEGN 229

Query: 451 MFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP 510
           +       K+   I  +M+R  ++ + ++  +L+ AL  +G ++E  + F ++      P
Sbjct: 230 V-------KKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRP 282

Query: 511 T---YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALV 567
               YN +++S   +    RA EI  +M+   I P+  TYN ++    ++     A  L+
Sbjct: 283 DLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLI 342

Query: 568 SMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEK 627
             M + G  P  +TY  LI      GD  +AL + + +  +G    +L YN +++  C+ 
Sbjct: 343 DEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKN 402

Query: 628 GRIDVIEFIIEQMHQNKVQPDPST 651
           G+ D  E ++++M +N + PD ST
Sbjct: 403 GQGDDAENMVKEMVENGITPDDST 426



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 76/353 (21%), Positives = 148/353 (41%), Gaps = 12/353 (3%)

Query: 309 SGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIAT 368
           S  A  L   M  L L   + T++  +R + S       +E+L+ M + N    ++ IA 
Sbjct: 22  SAPAFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALELLRQMPRPNAVTYNTVIAG 81

Query: 369 LSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKM--RQKLR 426
                     LD+   + ++     N   +   ++    + + + A+K+F +M  + +++
Sbjct: 82  FCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVK 141

Query: 427 PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKA 486
           P+   Y  L   +       ++G + + +    R+  +E  +A     ++ +     +  
Sbjct: 142 PEAVMYNALIGGY------CDQGKLDTALLYRDRM--VERGVAMTVATYNLLVHALFMDG 193

Query: 487 LGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAAT 546
            G E    EL++            TYN +++   +     +A+EIF+ M   G+     T
Sbjct: 194 RGTEAY--ELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVT 251

Query: 547 YNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVS 606
           Y  +I   S     +    L    VR G  P  + Y ALI      G+ D A  ++  + 
Sbjct: 252 YTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEME 311

Query: 607 LEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
            + I  D + YNT+++  C  GR+D    +I++M +  +QPD  T + + SGY
Sbjct: 312 KKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGY 364



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 95/213 (44%), Gaps = 13/213 (6%)

Query: 412 ERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA- 469
           ++A++IF  M R+ +R  + TY  L           E   +F   D A R   I  D+  
Sbjct: 231 KKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLF---DEAVR-RGIRPDLVL 286

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAM 529
            N + +SH +  N+ +A        E++      +      TYNT++  L        A 
Sbjct: 287 YNALINSHSTSGNIDRAF-------EIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEAR 339

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
           ++  +M   GI P+  TYN +I   S+    K A  + + M+  GF P  +TY ALI+ L
Sbjct: 340 KLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGL 399

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILK 622
              G  D+A N++  +   GI  D   Y ++++
Sbjct: 400 CKNGQGDDAENMVKEMVENGITPDDSTYISLIE 432



 Score = 58.9 bits (141), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 56/265 (21%), Positives = 117/265 (44%), Gaps = 20/265 (7%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ ++HA         A +L+ +M   GL P   TY+  I     +  ++  +E+ + M
Sbjct: 181 TYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENM 240

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPK--PFSAFLAACDTMDKP 411
            +  ++    T  +L    SK  ++   + L D+ + R   P    ++A + +  T    
Sbjct: 241 SRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNI 300

Query: 412 ERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           +RA +I  +M +K + PD  TY  L               +  +VD A+++  I+ +M +
Sbjct: 301 DRAFEIMGEMEKKRIAPDDVTYNTLMRGL----------CLLGRVDEARKL--ID-EMTK 347

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHR 527
             IQ   ++   L+     +G +++ ++   +       P   TYN ++  L +  +   
Sbjct: 348 RGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDD 407

Query: 528 AMEIFKQMKTCGIPPNAATYNIMID 552
           A  + K+M   GI P+ +TY  +I+
Sbjct: 408 AENMVKEMVENGITPDDSTYISLIE 432



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 76/166 (45%), Gaps = 8/166 (4%)

Query: 507 LGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI-DCCSIIRCFKSASA 565
           L  P     LH L+ A  S  A  +F  M    +P    T+NIM+   CS     K A A
Sbjct: 4   LSLPISTASLHPLLSALPSAPAFALFADMFRLRLPLCTTTFNIMLRHLCS---AGKPARA 60

Query: 566 LVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL-DLVSLEGIPHDVLLYNTILKKA 624
           L   ++R    P  +TY  +I      G    AL+++ ++    GI  +   Y T++   
Sbjct: 61  L--ELLRQMPRPNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGW 118

Query: 625 CEKGRID-VIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAM 669
           C+ GR+D  ++   E + + +V+P+    + +  GY + G  ++A+
Sbjct: 119 CKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTAL 164


>gi|168063537|ref|XP_001783727.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162664733|gb|EDQ51441.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 445

 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 80/406 (19%), Positives = 169/406 (41%), Gaps = 50/406 (12%)

Query: 323 GLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL--------SVECS 374
           G +P+  TY   + +++SD  L  G  +L+ M+++N+ P      TL         ++ +
Sbjct: 20  GHRPAKETYTLLLSSLISDGRLGEGPLLLQQMEEDNVIPDAIFFNTLLNGYCEAGKMKEA 79

Query: 375 KALELDLAE---------------------------ALLDQISRCTNPKP----FSAFLA 403
           +AL L++ E                            LL ++++  N KP    F+  + 
Sbjct: 80  EALVLEMKERGCPLITSSYNTLIKGYGLDGQPEEAMKLLQEMAKDVNSKPNDRTFNMLIK 139

Query: 404 ACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRIN 462
           A      PE+A  + + MR   + PD+ +Y  L  LF  +  P++  N+ +++ +     
Sbjct: 140 AWAHDKNPEKARNVISMMRAAGVGPDVVSYNTLAQLFAKLGKPWDAENVITEMQNV---- 195

Query: 463 AIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEA 522
                  R N +   I +   + A   +  +R + +   D  +P     +N ++    E+
Sbjct: 196 -----YLRPNERTYGIVINGYIAAGQIDESLRLIERMKMDGISPT-IAVFNHLVKGYSES 249

Query: 523 QESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTY 582
            + H+  ++FK M+  G+ P+  T+ ++++          A A++  M      P  M Y
Sbjct: 250 MKPHKVDKVFKLMENFGVKPDVQTFGLIMNAWCSTGLIDEAKAVLLRMKEYDLQPDVMAY 309

Query: 583 TALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642
           + L+K     G  +E    L+++  E +  +V+ Y T++   C   ++D    + ++M  
Sbjct: 310 SILVKGYSRQGRPEEGEAFLNIMIDENLKPNVITYTTVISGYCSLAQMDDAMRVFQEMRS 369

Query: 643 NKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLE 688
             V P+  T   +  G+    +   A E L+ +       ++  +E
Sbjct: 370 RSVFPNMQTFRTLIWGFKEARWPRRAEEILEYIRKAGFTPDLECIE 415



 Score = 53.1 bits (126), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 50/256 (19%), Positives = 110/256 (42%), Gaps = 26/256 (10%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLS- 370
           AE ++ +MQ++ L+P+  TY   I   ++   +   + +++ M+ + + P   TIA  + 
Sbjct: 185 AENVITEMQNVYLRPNERTYGIVINGYIAAGQIDESLRLIERMKMDGISP---TIAVFNH 241

Query: 371 -----VECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-K 424
                 E  K  ++D    L++      + + F   + A  +    + A  +  +M++  
Sbjct: 242 LVKGYSESMKPHKVDKVFKLMENFGVKPDVQTFGLIMNAWCSTGLIDEAKAVLLRMKEYD 301

Query: 425 LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLL 484
           L+PD+  Y +L   +     P EEG  F  +            M   N++ + I+   ++
Sbjct: 302 LQPDVMAYSILVKGYSRQGRP-EEGEAFLNI------------MIDENLKPNVITYTTVI 348

Query: 485 KALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIP 541
               +   + + ++ F + ++    P   T+ T++    EA+   RA EI + ++  G  
Sbjct: 349 SGYCSLAQMDDAMRVFQEMRSRSVFPNMQTFRTLIWGFKEARWPRRAEEILEYIRKAGFT 408

Query: 542 PNAATYNIMIDCCSII 557
           P+     ++ DC   I
Sbjct: 409 PDLECIELVADCWRSI 424



 Score = 48.5 bits (114), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 50/105 (47%)

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
           RDG  P   TYT L+  L+  G   E   LL  +  + +  D + +NT+L   CE G++ 
Sbjct: 18  RDGHRPAKETYTLLLSSLISDGRLGEGPLLLQQMEEDNVIPDAIFFNTLLNGYCEAGKMK 77

Query: 632 VIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
             E ++ +M +       S+ + +  GY   G    AM+ LQ ++
Sbjct: 78  EAEALVLEMKERGCPLITSSYNTLIKGYGLDGQPEEAMKLLQEMA 122



 Score = 43.5 bits (101), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 35/168 (20%), Positives = 77/168 (45%), Gaps = 8/168 (4%)

Query: 90  FFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLG 149
           F H++   + S  P  V + +++ME   +  + + + L+M A C  G ++EA  ++  + 
Sbjct: 239 FNHLVKGYSESMKPHKVDKVFKLMENFGVKPDVQTFGLIMNAWCSTGLIDEAKAVLLRMK 298

Query: 150 ERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNL 209
           E Y + P +  Y+  +   ++          L++M    +  N +TYT ++       +L
Sbjct: 299 E-YDLQPDVMAYSILVKGYSRQGRPEEGEAFLNIMIDENLKPNVITYTTVISGYC---SL 354

Query: 210 SAVHEIWEDYIKHYSLSIF----SLRKFVWSFTRLRDLKSAYETLQHM 253
           + + +    + +  S S+F    + R  +W F   R  + A E L+++
Sbjct: 355 AQMDDAMRVFQEMRSRSVFPNMQTFRTLIWGFKEARWPRRAEEILEYI 402



 Score = 40.4 bits (93), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 67/167 (40%), Gaps = 4/167 (2%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +F  +++A   T     A+ ++L+M+   LQP    Y   ++          G   L IM
Sbjct: 273 TFGLIMNAWCSTGLIDEAKAVLLRMKEYDLQPDVMAYSILVKGYSRQGRPEEGEAFLNIM 332

Query: 355 QQNNLKPQDSTIAT-LSVECSKALELDLAEALLDQISRCTNP--KPFSAFLAACDTMDKP 411
              NLKP   T  T +S  CS A   D      +  SR   P  + F   +        P
Sbjct: 333 IDENLKPNVITYTTVISGYCSLAQMDDAMRVFQEMRSRSVFPNMQTFRTLIWGFKEARWP 392

Query: 412 ERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDS 457
            RA +I   +R+    PD+   EL+   + ++ A  E   + +  +S
Sbjct: 393 RRAEEILEYIRKAGFTPDLECIELVADCWRSIGADGEADRVLAGTNS 439


>gi|186495472|ref|NP_177628.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|133778904|gb|ABO38792.1| At1g74900 [Arabidopsis thaliana]
 gi|332197524|gb|AEE35645.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 453

 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 137/343 (39%), Gaps = 23/343 (6%)

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKP-- 411
           M+   + P   T A ++   + A + D A  L   +      +  ++F    D + K   
Sbjct: 117 MRSLRIGPSPKTFAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLCKSKR 176

Query: 412 -ERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
            E+A ++F  +R +   D  TY ++              N +  +    +   +  +M  
Sbjct: 177 VEKAYELFRALRGRFSVDTVTYNVIL-------------NGWCLIKRTPKALEVLKEMVE 223

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKT---PLGTPTYNTVLHSLVEAQESHR 527
             I  +  +   +LK     G IR   ++F + K     +   TY TV+H    A E  R
Sbjct: 224 RGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKR 283

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A  +F +M   G+ P+ ATYN MI         ++A  +   MVR G+ P   TY  LI+
Sbjct: 284 ARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIR 343

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
            L   G+F     L+  +  EG   +   YN +++   E   ++    + E+M      P
Sbjct: 344 GLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGSGDCLP 403

Query: 648 DPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEK 690
           +  T + + SG     F     E + V   +   +E+  L+ K
Sbjct: 404 NLDTYNILISGM----FVRKRSEDMVVAGNQAFAKEILRLQSK 442


>gi|296087509|emb|CBI34098.3| unnamed protein product [Vitis vinifera]
          Length = 718

 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 78/397 (19%), Positives = 162/397 (40%), Gaps = 30/397 (7%)

Query: 271 RLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHT 330
           R++   +   IP+N +        +++ +IH   +      A +++  M +LG +P+S T
Sbjct: 66  RIKDVMVSCGIPINLI--------TYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRT 117

Query: 331 YDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQIS 390
           +   I     +  +   +E+L  M++ NL P   +   +        +L LA  LL++++
Sbjct: 118 FCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMT 177

Query: 391 RCTNPKP----FSAFLAACDTMDKPERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAP 445
             +  KP    +S  +    +  + E A ++   M    + PDI  Y  + S        
Sbjct: 178 F-SGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCL------ 230

Query: 446 YEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYF---CD 502
                  S+    +  +   +++    ++   ++    +      G + E  +YF    D
Sbjct: 231 -------SKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLD 283

Query: 503 SKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKS 562
                  P Y  +++   +A     A+ IF+ +   G+ P+  T +  I         + 
Sbjct: 284 HGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQE 343

Query: 563 ASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILK 622
           A  + S +   G  P   TY++LI      G+ ++A  L D + L+GI  ++ +YN ++ 
Sbjct: 344 ALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVD 403

Query: 623 KACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
             C+ G I     + + M +  ++PD  T   +  GY
Sbjct: 404 GLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGY 440



 Score = 86.7 bits (213), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 123/576 (21%), Positives = 221/576 (38%), Gaps = 95/576 (16%)

Query: 99  RSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPIL 158
           R  D   V+    +M    I +N   Y +++  LCK G +E+A+ ++  +    G  P  
Sbjct: 57  REGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGM-ITLGCKPNS 115

Query: 159 PVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWED 218
             +   +    + H+M  A   LD M+ R +  + V+Y  ++      K+LS  +++ E 
Sbjct: 116 RTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEK 175

Query: 219 YIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSR-- 276
                            +F+ L+     Y TL       +MG       SEGR+  +R  
Sbjct: 176 ----------------MTFSGLKPNVVVYSTL-------IMG-----YASEGRIEEARRL 207

Query: 277 LDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIR 336
           LD        P +    + ++ +I    +      A   +L++Q  GL+P + T+  FI 
Sbjct: 208 LDGMSCSGVAPDI----FCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFIL 263

Query: 337 AIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEAL-----LDQISR 391
                  +    +    M  + L P +     L     KA   +L EAL     L  +  
Sbjct: 264 GYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKA--GNLMEALSIFRHLHALGV 321

Query: 392 CTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLF---GNVNAPYE 447
             + +  SAF+       + + A+K+F+++++K L PD+ TY  L S F   G V   +E
Sbjct: 322 LPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFE 381

Query: 448 EGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPL 507
                                      H  + +K +   +                    
Sbjct: 382 --------------------------LHDEMCLKGIAPNI-------------------- 395

Query: 508 GTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALV 567
               YN ++  L ++ +  RA ++F  M   G+ P++ TY+ MID          A +L 
Sbjct: 396 --FIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLF 453

Query: 568 SMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEK 627
             M   G  P +  Y AL+      GD ++A+NL   +  +G     L +NT++   C+ 
Sbjct: 454 HEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFA-TTLSFNTLIDGYCKS 512

Query: 628 GRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
            +I     + ++M   ++ PD  T   V   +   G
Sbjct: 513 CKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAG 548



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 92/406 (22%), Positives = 165/406 (40%), Gaps = 38/406 (9%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +F  +I    R  N G A +L+ +M+   L PS+ +Y   I  +   + L    ++L+ M
Sbjct: 117 TFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKM 176

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDK 410
             + LKP     +TL +  +    ++ A  LLD +S C+   P    ++A ++      K
Sbjct: 177 TFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMS-CSGVAPDIFCYNAIISCLSKAGK 235

Query: 411 PERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
            E A     +++ + L+PD  T+      +       E    F ++        ++  + 
Sbjct: 236 MEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEM--------LDHGLM 287

Query: 470 RNN-----IQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGT----PTYNTVLHSLV 520
            NN     + + H    NL++AL    + R L          LG      T +  +H L+
Sbjct: 288 PNNPLYTVLINGHFKAGNLMEALS---IFRHL--------HALGVLPDVQTCSAFIHGLL 336

Query: 521 EAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTM 580
           +      A+++F ++K  G+ P+  TY+ +I         + A  L   M   G  P   
Sbjct: 337 KNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIF 396

Query: 581 TYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQM 640
            Y AL+  L   GD   A  L D +  +G+  D + Y+T++   C+   +     +  +M
Sbjct: 397 IYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEM 456

Query: 641 HQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
               VQP      FV++  V+       ME    L   ML +  +T
Sbjct: 457 PSKGVQPHS----FVYNALVHGCCKEGDMEKAMNLFREMLQKGFAT 498



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 80/385 (20%), Positives = 141/385 (36%), Gaps = 24/385 (6%)

Query: 319 MQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALE 378
           M   GL P+++TY      +   + +       + MQ+  LKP  +  + L     +  +
Sbjct: 1   MGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGD 60

Query: 379 LDLAEALLDQISRCTNPK---PFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYEL 434
           +D    + D +  C  P     ++  +       K E+A +I   M     +P+ RT+ L
Sbjct: 61  IDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCL 120

Query: 435 LFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM--DMARNNIQHSHISMKNLLKAL---GA 489
           L      +     E NM           A+E+  +M + N+  S +S   ++  L     
Sbjct: 121 L------IEGYCREHNMG---------RALELLDEMEKRNLVPSAVSYGAMINGLCHCKD 165

Query: 490 EGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNI 549
             +  +L++    S        Y+T++           A  +   M   G+ P+   YN 
Sbjct: 166 LSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNA 225

Query: 550 MIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEG 609
           +I C S     + AS  +  +   G  P  +T+ A I      G   EA    D +   G
Sbjct: 226 IISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHG 285

Query: 610 IPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAM 669
           +  +  LY  ++    + G +     I   +H   V PD  TC     G +  G    A+
Sbjct: 286 LMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEAL 345

Query: 670 EALQVLSMRMLCEEVSTLEEKRSDF 694
           +    L  + L  +V T     S F
Sbjct: 346 KVFSELKEKGLVPDVFTYSSLISGF 370


>gi|302760727|ref|XP_002963786.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
 gi|300169054|gb|EFJ35657.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
          Length = 432

 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 85/352 (24%), Positives = 144/352 (40%), Gaps = 36/352 (10%)

Query: 324 LQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL------SVECSKAL 377
           L  SS TY+  IR   +   L     +L+ M    ++  D T + +          ++AL
Sbjct: 21  LPASSVTYNVLIRGFCNASDLDAAFSLLREMDVEGMQCNDRTTSIILQGLCRCGRVAQAL 80

Query: 378 E-----LDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKM--RQKLRPDIR 430
           E     L+LA A  D +S       ++  +     + + + A  +F KM      RP+  
Sbjct: 81  EHFDASLELAHAQPDVVS-------YTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAF 133

Query: 431 TYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAE 490
           TY  L       +          ++D+A+   A+  +  + +     ++   L+ AL   
Sbjct: 134 TYNALVDGLCKQD----------RLDAAR---AVITEARKRDFAPDVVTYNTLMAALFQL 180

Query: 491 GMIRELIQYFCDSKTPLGTPT---YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATY 547
           G + E +  F         PT   +N ++  L  A+    A+E+F +M      PN  TY
Sbjct: 181 GRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTY 240

Query: 548 NIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSL 607
           +++ID          A  L+  MV +G  P  + YT L+      G  D AL LL  +  
Sbjct: 241 SVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVS 300

Query: 608 EGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
           +G   DV+ Y  ++ K C+ GR+D    I  ++  NK  P+  T   +  GY
Sbjct: 301 QGCIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGY 352



 Score = 55.8 bits (133), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 74/169 (43%), Gaps = 8/169 (4%)

Query: 506 PLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASA 565
           P  + TYN ++     A +   A  + ++M   G+  N  T +I++    + RC + A A
Sbjct: 22  PASSVTYNVLIRGFCNASDLDAAFSLLREMDVEGMQCNDRTTSIILQ--GLCRCGRVAQA 79

Query: 566 L----VSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL-DLVSLEGIPHDVLLYNTI 620
           L     S+ +     P  ++YT LI  L   G  D A +L   +V+  G   +   YN +
Sbjct: 80  LEHFDASLELAHA-QPDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNAL 138

Query: 621 LKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAM 669
           +   C++ R+D    +I +  +    PD  T + + +     G  + A+
Sbjct: 139 VDGLCKQDRLDAARAVITEARKRDFAPDVVTYNTLMAALFQLGRVDEAL 187



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 69/346 (19%), Positives = 132/346 (38%), Gaps = 40/346 (11%)

Query: 220 IKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMM--GKLYINRTSEGRLRSSRL 277
           + H    + S    +    +L  + +A++  + MVA           N   +G  +  RL
Sbjct: 89  LAHAQPDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRL 148

Query: 278 DIPIPLNALPVMKVLRWSFS-DVIHACGRTQNSGLAEQLML-----------QMQSLGLQ 325
           D    +    + +  +  F+ DV+     T N+ +A    L           QM   G  
Sbjct: 149 DAARAV----ITEARKRDFAPDVV-----TYNTLMAALFQLGRVDEALATFTQMTEEGYV 199

Query: 326 PSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEAL 385
           P+  +++  I  +   R L + +EV   M   +  P   T + +     K+ +LD A+ L
Sbjct: 200 PTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQL 259

Query: 386 LDQ-ISRCTNPK--PFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGN 441
           LD+ +S    P    ++  +       + + A+ +  +M  Q   PD+ TY ++      
Sbjct: 260 LDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCK 319

Query: 442 VNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFC 501
           V           +VD A   + I  ++  N    + ++   L+        + E  +   
Sbjct: 320 V----------GRVDDA---HEIFRELVANKCSPNVVTYSALIGGYCRASRVDEGGKVMR 366

Query: 502 DSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATY 547
           +        TYNT++  L     +  A  +F++M  CG  P+A TY
Sbjct: 367 EMACRPNVVTYNTMIWGLSMVDRNEEAYGMFREMSECGFVPDARTY 412



 Score = 46.6 bits (109), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 71/333 (21%), Positives = 128/333 (38%), Gaps = 18/333 (5%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y  ++  LCK G ++ A +L   +    G  P    YN+ +    K   +  A   +   
Sbjct: 99  YTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAARAVITEA 158

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK----HYSLSIFSLRKFVWSFTRL 240
             R    + VTY  L+  A++Q  L  V E    + +     Y  ++ S    +    R 
Sbjct: 159 RKRDFAPDVVTYNTLMA-ALFQ--LGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRA 215

Query: 241 RDLKSAYETLQHMVALAMMGKLYI-NRTSEGRLRSSRLDIPIPLNALPVMKVLR---WSF 296
           R L  A E    M+       L   +   +G  +S +LD    L    V +  R    ++
Sbjct: 216 RRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAY 275

Query: 297 SDVI---HACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           + ++    A GR  +   A  L+ +M S G  P   TY   I  +     + +  E+ + 
Sbjct: 276 TPLVLGFSAAGRLDS---ALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFRE 332

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPER 413
           +  N   P   T + L     +A  +D    ++ +++   N   ++  +     +D+ E 
Sbjct: 333 LVANKCSPNVVTYSALIGGYCRASRVDEGGKVMREMACRPNVVTYNTMIWGLSMVDRNEE 392

Query: 414 AIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAP 445
           A  +F +M +    PD RTY  L      ++ P
Sbjct: 393 AYGMFREMSECGFVPDARTYRGLKRALRMIDQP 425



 Score = 44.3 bits (103), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 30/163 (18%), Positives = 71/163 (43%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TYN ++  L +      A  +  + +     P+  TYN ++     +     A A  + M
Sbjct: 134 TYNALVDGLCKQDRLDAARAVITEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQM 193

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
             +G+ P  +++ A+I  L       +AL + + +       +++ Y+ ++   C+  ++
Sbjct: 194 TEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQL 253

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           D  + ++++M     +PD      +  G+   G  +SA+  L+
Sbjct: 254 DEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLR 296


>gi|449508067|ref|XP_004163208.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 81/377 (21%), Positives = 159/377 (42%), Gaps = 26/377 (6%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           SF+ ++   G+     LA  + ++M + G++PS  T++  I  +     ++    ++  +
Sbjct: 169 SFTTLLIQLGKFDMVDLARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHI 228

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR--C-TNPKPFSAFLAACDTMDKP 411
            + +  P   T  +L +   +   LDLA A+ D++ +  C  N   +S  +    +  + 
Sbjct: 229 FRYDAYPNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRL 288

Query: 412 ERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM--DM 468
           E A+ +  +M QK + P + TY +                + S  D+     A+E+   M
Sbjct: 289 EEAMDMLEEMVQKGIEPTVYTYTI---------------PLVSLCDAGCSSEAVELLGKM 333

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRELIQYF----CDSKTPLGTPTYNTVLHSLVEAQE 524
            +     +  +   L+  L  +G     I  +     D   P  T TYN +++ L     
Sbjct: 334 KKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPT-TVTYNALINQLCVEGR 392

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
              A  IFK M + G  P+  TYN +I C  ++   + A  +   M++ G  P  +TY  
Sbjct: 393 FETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNT 452

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
           LI      G+ + A+ LL+++   G+  D   Y  ++      G+++    +   M ++ 
Sbjct: 453 LIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHG 512

Query: 645 VQPDPSTCHFVFSGYVN 661
           + P+  T   +  GY N
Sbjct: 513 ISPNHVTYTAIIDGYFN 529



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 99/230 (43%), Gaps = 3/230 (1%)

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQE 524
           M ++    + ++   L+  L +EG + E   +++            TY   L SL +A  
Sbjct: 263 MVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGC 322

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
           S  A+E+  +MK  G  PN  T+  +I   S    F+ A  L   M+ DG  P T+TY A
Sbjct: 323 SSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNA 382

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
           LI  L   G F+ A  +   +   G       YN I+K  C  G I     I ++M +  
Sbjct: 383 LINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAG 442

Query: 645 VQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDF 694
             P+  T + +  GY   G  N+AM  L+++    L  +  T  E  S F
Sbjct: 443 SSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGF 492



 Score = 74.3 bits (181), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 130/627 (20%), Positives = 235/627 (37%), Gaps = 87/627 (13%)

Query: 128 MMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSR 187
           M+  LCK G ++EA  LI     RY  YP    Y S +    + H++  A    D M   
Sbjct: 208 MINILCKKGRVQEA-KLIMSHIFRYDAYPNAFTYTSLILGHCRNHNLDLAFAMFDRMVKD 266

Query: 188 MVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFT----RLRDL 243
               N VTY+ L+     +  L    ++ E+ ++        +   V+++T     L D 
Sbjct: 267 GCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQK------GIEPTVYTYTIPLVSLCDA 320

Query: 244 KSAYETLQHMVALAMMGKLYINRTS----EGRLRSSRLDIPIPL---------------- 283
             + E ++ +  +   G +   +T      G  R  + +I I L                
Sbjct: 321 GCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTY 380

Query: 284 NAL-----------PVMKVLRWSFSDVIHACGRTQNS--------GLAEQLML---QMQS 321
           NAL               + +W  S       +T N         G  ++ M+   +M  
Sbjct: 381 NALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLK 440

Query: 322 LGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDL 381
            G  P+  TY+  I        L N M +L+IM+ N LKP   T   L    S+  +L+ 
Sbjct: 441 AGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEH 500

Query: 382 AEALLDQISR---CTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLR-PDIRTYELLFS 437
           A +L   +       N   ++A +     + K + A+ +F KM +    P  +TY ++ S
Sbjct: 501 ATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMIS 560

Query: 438 LFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELI 497
            F   N+  E  N   +             M +  +  + I+  + +  L   G      
Sbjct: 561 GFSKTNSISEAENFCGK-------------MVKQGLLPNVITYTSFIDGLCRNGRTGLAF 607

Query: 498 QYFCDSKTPLGTP---TYNTVLHSLVEAQESHRA--MEIFKQMKTCGIPPNAATYNIMI- 551
           + F + +     P   TY+++++ L +   +  A    +  ++   G  PN  TY  ++ 
Sbjct: 608 KIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVK 667

Query: 552 DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIP 611
             C   RC+++   +VSM  + G  P    Y AL+         + ALN+   +   G  
Sbjct: 668 GLCGEGRCYEADQLVVSMQ-KKGLQPSEEIYRALLIGECKNLKVESALNIFYSMDTLGFQ 726

Query: 612 HDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEA 671
             +  Y  ++   C++  I+  + I + M +     D      +  G +  G  +  ++ 
Sbjct: 727 LHLSDYKALICALCKENFIEEAQCIFQTMLEKHWNSDEVAWTVLLDGLLKEGETDLCLKL 786

Query: 672 LQVLSMR----------MLCEEVSTLE 688
           L V+  R          ML  E+S L+
Sbjct: 787 LHVMESRNCTLNFQTYVMLARELSALD 813



 Score = 63.2 bits (152), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 95/209 (45%), Gaps = 4/209 (1%)

Query: 483 LLKALGAEGMIRELIQYFCD--SKTPLGTP--TYNTVLHSLVEAQESHRAMEIFKQMKTC 538
           ++K+   EG ++ + Q+  +  SK   G    ++ T+L  L +      A +++ +M   
Sbjct: 137 MIKSCRNEGEVKRVTQFLSEINSKYDFGYTLCSFTTLLIQLGKFDMVDLARDMYIKMLNS 196

Query: 539 GIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEA 598
           GI P+  T+N MI+        + A  ++S + R   YP   TYT+LI       + D A
Sbjct: 197 GIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHNLDLA 256

Query: 599 LNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
             + D +  +G   + + Y+T++   C +GR++    ++E+M Q  ++P   T       
Sbjct: 257 FAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVS 316

Query: 659 YVNCGFHNSAMEALQVLSMRMLCEEVSTL 687
             + G  + A+E L  +  R     + T 
Sbjct: 317 LCDAGCSSEAVELLGKMKKRGCVPNIQTF 345


>gi|356530296|ref|XP_003533718.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Glycine max]
          Length = 830

 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 77/360 (21%), Positives = 148/360 (41%), Gaps = 59/360 (16%)

Query: 297 SDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQ 356
           S VI ACGR      A + + +++  G +P +  Y+  ++           + +LK M+ 
Sbjct: 291 STVISACGREGMLDEARKFLAELKLNGYKPGTVMYNSMLQVFGKAGIYTEALSILKEMED 350

Query: 357 NNLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKPER 413
           NN  P   T   L+    +A  LD   A++D ++      N   ++  + A     + + 
Sbjct: 351 NNCPPDSITYNELAATYVRAGFLDEGMAVIDTMTSKGVMPNAITYTTVIDAYGKAGREDD 410

Query: 414 AIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNN 472
           A+++F+KM+     P++ TY                                        
Sbjct: 411 ALRLFSKMKDLGCAPNVYTY---------------------------------------- 430

Query: 473 IQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAM 529
                    ++L  LG +    ++I+  C+ K     P   T+NT+L    E  + +   
Sbjct: 431 --------NSVLAMLGKKSRTEDVIKVLCEMKLNGCAPNRATWNTMLAVCSEEGKHNYVN 482

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFK--SASALVSMMVRDGFYPQTMTYTALIK 587
           ++ ++MK CG  P+  T+N +I   S  RC     ++ +   MV+ GF P   TY AL+ 
Sbjct: 483 KVLREMKNCGFEPDKDTFNTLIS--SYARCGSEVDSAKMYGEMVKSGFTPCVTTYNALLN 540

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
            L   GD+  A +++  +  +G   +   Y+ +L    + G +  IE + ++++  +V P
Sbjct: 541 ALAHRGDWKAAESVIQDMQTKGFKPNETSYSLLLHCYSKAGNVRGIEKVEKEIYDGQVFP 600



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/282 (23%), Positives = 122/282 (43%), Gaps = 16/282 (5%)

Query: 396 KPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQ 454
           + ++  L A     K +RAI +F KM    L P + TY ++  ++G +   +  G +   
Sbjct: 217 RAYTTILHAYARSGKYKRAIDLFDKMEGIGLDPTLVTYNVMLDVYGKMGRSW--GRILEL 274

Query: 455 VDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKT---PLGTPT 511
           +D          +M    ++    +   ++ A G EGM+ E  ++  + K      GT  
Sbjct: 275 LD----------EMRSKGLEFDEFTCSTVISACGREGMLDEARKFLAELKLNGYKPGTVM 324

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           YN++L    +A     A+ I K+M+    PP++ TYN +              A++  M 
Sbjct: 325 YNSMLQVFGKAGIYTEALSILKEMEDNNCPPDSITYNELAATYVRAGFLDEGMAVIDTMT 384

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
             G  P  +TYT +I      G  D+AL L   +   G   +V  YN++L    +K R +
Sbjct: 385 SKGVMPNAITYTTVIDAYGKAGREDDALRLFSKMKDLGCAPNVYTYNSVLAMLGKKSRTE 444

Query: 632 VIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
            +  ++ +M  N   P+ +T + + +     G HN   + L+
Sbjct: 445 DVIKVLCEMKLNGCAPNRATWNTMLAVCSEEGKHNYVNKVLR 486



 Score = 79.7 bits (195), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 92/411 (22%), Positives = 165/411 (40%), Gaps = 31/411 (7%)

Query: 264 INRTSEGRLRSSRLD-IPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSL 322
           + R S+  + S   D IP+   +L V      +++ ++HA  R+     A  L  +M+ +
Sbjct: 191 LGRESQHSIASKLFDLIPVEKYSLDVR-----AYTTILHAYARSGKYKRAIDLFDKMEGI 245

Query: 323 GLQPSSHTYDGFIRAIVSDRGLRNG--MEVLKIMQQNNLKPQDSTIATLSVECSKALELD 380
           GL P+  TY+  +  +    G   G  +E+L  M+   L+  + T +T+   C +   LD
Sbjct: 246 GLDPTLVTYNVMLD-VYGKMGRSWGRILELLDEMRSKGLEFDEFTCSTVISACGREGMLD 304

Query: 381 LAEALLDQISRCTNPKP----FSAFLAACDTMDKPERAIKIFAKMR-QKLRPDIRTYELL 435
            A   L ++ +    KP    +++ L           A+ I  +M      PD  TY  L
Sbjct: 305 EARKFLAEL-KLNGYKPGTVMYNSMLQVFGKAGIYTEALSILKEMEDNNCPPDSITYNEL 363

Query: 436 FSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRE 495
            + +  V A + +  M           A+   M    +  + I+   ++ A G  G   +
Sbjct: 364 AATY--VRAGFLDEGM-----------AVIDTMTSKGVMPNAITYTTVIDAYGKAGREDD 410

Query: 496 LIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID 552
            ++ F   K     P   TYN+VL  L +   +   +++  +MK  G  PN AT+N M+ 
Sbjct: 411 ALRLFSKMKDLGCAPNVYTYNSVLAMLGKKSRTEDVIKVLCEMKLNGCAPNRATWNTMLA 470

Query: 553 CCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPH 612
            CS        + ++  M   GF P   T+  LI      G   ++  +   +   G   
Sbjct: 471 VCSEEGKHNYVNKVLREMKNCGFEPDKDTFNTLISSYARCGSEVDSAKMYGEMVKSGFTP 530

Query: 613 DVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
            V  YN +L     +G     E +I+ M     +P+ ++   +   Y   G
Sbjct: 531 CVTTYNALLNALAHRGDWKAAESVIQDMQTKGFKPNETSYSLLLHCYSKAG 581



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 81/389 (20%), Positives = 158/389 (40%), Gaps = 22/389 (5%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ VI A G+      A +L  +M+ LG  P+ +TY+  +  +       + ++VL  M
Sbjct: 394 TYTTVIDAYGKAGREDDALRLFSKMKDLGCAPNVYTYNSVLAMLGKKSRTEDVIKVLCEM 453

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRC---TNPKPFSAFLAACDTMDKP 411
           + N   P  +T  T+   CS+  + +    +L ++  C    +   F+  +++       
Sbjct: 454 KLNGCAPNRATWNTMLAVCSEEGKHNYVNKVLREMKNCGFEPDKDTFNTLISSYARCGSE 513

Query: 412 ERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
             + K++ +M +    P + TY  L              N  +     K   ++  DM  
Sbjct: 514 VDSAKMYGEMVKSGFTPCVTTYNALL-------------NALAHRGDWKAAESVIQDMQT 560

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQES--H-R 527
              + +  S   LL      G +R + +   +       P++  +L +LV +     H R
Sbjct: 561 KGFKPNETSYSLLLHCYSKAGNVRGIEKVEKEIYDGQVFPSW-ILLRTLVLSNHKCRHLR 619

Query: 528 AME-IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
            ME  F Q++  G  P+    N M+   S  + F  A  ++  +   G  P   TY  L+
Sbjct: 620 GMERAFDQLQKYGYKPDLVVINSMLSMFSRNKMFSKAREMLHFIHECGLQPNLFTYNCLM 679

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
            + +   +  +A  +L  +       DV+ YNT++K  C KG +     ++ +M    +Q
Sbjct: 680 DLYVREDECWKAEEVLKGIQNSVPEPDVVSYNTVIKGFCRKGLMQEAIRVLSEMTTKGIQ 739

Query: 647 PDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
           P   T +   SGY      + A E ++ +
Sbjct: 740 PTIVTYNTFLSGYAGMELFDEANEVIRFM 768



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/202 (21%), Positives = 81/202 (40%), Gaps = 36/202 (17%)

Query: 504 KTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID----------- 552
           K  L    Y T+LH+   + +  RA+++F +M+  G+ P   TYN+M+D           
Sbjct: 211 KYSLDVRAYTTILHAYARSGKYKRAIDLFDKMEGIGLDPTLVTYNVMLDVYGKMGRSWGR 270

Query: 553 -------------------CCSIIRC------FKSASALVSMMVRDGFYPQTMTYTALIK 587
                              C ++I           A   ++ +  +G+ P T+ Y ++++
Sbjct: 271 ILELLDEMRSKGLEFDEFTCSTVISACGREGMLDEARKFLAELKLNGYKPGTVMYNSMLQ 330

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
           +    G + EAL++L  +     P D + YN +       G +D    +I+ M    V P
Sbjct: 331 VFGKAGIYTEALSILKEMEDNNCPPDSITYNELAATYVRAGFLDEGMAVIDTMTSKGVMP 390

Query: 648 DPSTCHFVFSGYVNCGFHNSAM 669
           +  T   V   Y   G  + A+
Sbjct: 391 NAITYTTVIDAYGKAGREDDAL 412



 Score = 54.3 bits (129), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 102/513 (19%), Positives = 187/513 (36%), Gaps = 72/513 (14%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y  M+Q   K G   EA +++  + E     P    YN       +   +      +D M
Sbjct: 325 YNSMLQVFGKAGIYTEALSILKEM-EDNNCPPDSITYNELAATYVRAGFLDEGMAVIDTM 383

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLK 244
            S+ V  N +TYT ++                 D          +LR     F++++DL 
Sbjct: 384 TSKGVMPNAITYTTVI-----------------DAYGKAGREDDALR----LFSKMKDLG 422

Query: 245 SAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNAL---------------PVM 289
            A     +   LAM+GK          L   +L+   P  A                 V 
Sbjct: 423 CAPNVYTYNSVLAMLGKKSRTEDVIKVLCEMKLNGCAPNRATWNTMLAVCSEEGKHNYVN 482

Query: 290 KVLRW-----------SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAI 338
           KVLR            +F+ +I +  R  +   + ++  +M   G  P   TY+  + A+
Sbjct: 483 KVLREMKNCGFEPDKDTFNTLISSYARCGSEVDSAKMYGEMVKSGFTPCVTTYNALLNAL 542

Query: 339 VSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPF 398
                 +    V++ MQ    KP +++ + L    SKA  +   E +  +I    + + F
Sbjct: 543 AHRGDWKAAESVIQDMQTKGFKPNETSYSLLLHCYSKAGNVRGIEKVEKEI---YDGQVF 599

Query: 399 SAFLA---------ACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEG 449
            +++           C  +   ERA     K   K  PD+     + S+F          
Sbjct: 600 PSWILLRTLVLSNHKCRHLRGMERAFDQLQKYGYK--PDLVVINSMLSMF-------SRN 650

Query: 450 NMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGT 509
            MFS+  + + ++ I     + N+  ++  + +L           E+++   +S      
Sbjct: 651 KMFSK--AREMLHFIHECGLQPNL-FTYNCLMDLYVREDECWKAEEVLKGIQNSVPEPDV 707

Query: 510 PTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSM 569
            +YNTV+           A+ +  +M T GI P   TYN  +   + +  F  A+ ++  
Sbjct: 708 VSYNTVIKGFCRKGLMQEAIRVLSEMTTKGIQPTIVTYNTFLSGYAGMELFDEANEVIRF 767

Query: 570 MVRDGFYPQTMTYTALIKILLDYGDFDEALNLL 602
           M+     P  +TY  L+      G  +EA++ +
Sbjct: 768 MIEHNCRPSELTYKILVDGYCKAGKHEEAMDFV 800


>gi|224078588|ref|XP_002305565.1| predicted protein [Populus trichocarpa]
 gi|222848529|gb|EEE86076.1| predicted protein [Populus trichocarpa]
          Length = 757

 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 89/392 (22%), Positives = 164/392 (41%), Gaps = 25/392 (6%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +F+ +I A  R      A  LM +M+  GL P   T+   ++  + +  L   M V + M
Sbjct: 197 TFNILIKALCRAHQIRPAILLMEEMEDFGLLPDEKTFTTIMQGFIEEGNLDGAMRVKEQM 256

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDK 410
            +      + T+  L     K   ++ A   ++++S      P    F+  +        
Sbjct: 257 VEAGCVVTNVTVNVLVNGFCKEGRIEEALRFIEEMSLREGFFPDKYTFNMLVNGLSKTGH 316

Query: 411 PERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI--NAIEMD 467
            + A+++   M R+   PDI TY  L S    +           +VD A ++    IE D
Sbjct: 317 VKHALEVMDMMLREGFDPDIYTYNSLISGLCKL----------GEVDEAVKVLNQMIERD 366

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQE 524
            + N + ++ I     +  L  E  + E   L              TYN+++  L  ++ 
Sbjct: 367 CSPNTVTYNTI-----ISTLCKENQVEEATKLALVLTGKGILPDVCTYNSLIQGLCLSRN 421

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
              AME++K+MKT G  P+  TYN++ID        + A  L+  M   G     +TY  
Sbjct: 422 HTVAMELYKEMKTKGCHPDEFTYNMLIDSLCFRGKLQEALNLLKEMEVSGCARNVITYNT 481

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
           LI          EA  + D + L+G+  + + YNT++   C+  R++    +++QM    
Sbjct: 482 LIDGFCKNKRIAEAEEIFDQMELQGVSRNSVTYNTLIDGLCKSERVEEASQLMDQMIMEG 541

Query: 645 VQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
           ++PD  T + + + +   G    A + +Q ++
Sbjct: 542 LRPDKFTYNSLLTYFCKAGDIKKAADIVQTMA 573



 Score = 88.2 bits (217), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 74/336 (22%), Positives = 146/336 (43%), Gaps = 24/336 (7%)

Query: 323 GLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLA 382
           G  P  +T++  +  +     +++ +EV+ +M +    P   T  +L     K  E+D A
Sbjct: 296 GFFPDKYTFNMLVNGLSKTGHVKHALEVMDMMLREGFDPDIYTYNSLISGLCKLGEVDEA 355

Query: 383 EALLDQ-ISRCTNPKP--FSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSL 438
             +L+Q I R  +P    ++  ++     ++ E A K+   +  K + PD+ TY  L   
Sbjct: 356 VKVLNQMIERDCSPNTVTYNTIISTLCKENQVEEATKLALVLTGKGILPDVCTYNSLI-- 413

Query: 439 FGNVNAPYEEGNMFSQVDSAKRINAIEM--DMARNNIQHSHISMKNLLKALGAEGMIREL 496
                    +G   S+  +     A+E+  +M          +   L+ +L   G ++E 
Sbjct: 414 ---------QGLCLSRNHTV----AMELYKEMKTKGCHPDEFTYNMLIDSLCFRGKLQEA 460

Query: 497 IQYFCD---SKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC 553
           +    +   S       TYNT++    + +    A EIF QM+  G+  N+ TYN +ID 
Sbjct: 461 LNLLKEMEVSGCARNVITYNTLIDGFCKNKRIAEAEEIFDQMELQGVSRNSVTYNTLIDG 520

Query: 554 CSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHD 613
                  + AS L+  M+ +G  P   TY +L+      GD  +A +++  ++ +G   D
Sbjct: 521 LCKSERVEEASQLMDQMIMEGLRPDKFTYNSLLTYFCKAGDIKKAADIVQTMASDGCEPD 580

Query: 614 VLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649
           ++ Y T++   C+ GR++    ++  +    +   P
Sbjct: 581 IVTYGTLIAGLCKAGRVEAATKLLRTIQMKGINLTP 616



 Score = 58.9 bits (141), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 76/372 (20%), Positives = 155/372 (41%), Gaps = 10/372 (2%)

Query: 90  FFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLG 149
           F  ++N  +++      +E   MM  +    +   Y  ++  LCK G ++EA  ++  + 
Sbjct: 304 FNMLVNGLSKTGHVKHALEVMDMMLREGFDPDIYTYNSLISGLCKLGEVDEAVKVLNQMI 363

Query: 150 ERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNL 209
           ER    P    YN+ +    K + +  A     ++  + +  +  TY  L++     +N 
Sbjct: 364 ER-DCSPNTVTYNTIISTLCKENQVEEATKLALVLTGKGILPDVCTYNSLIQGLCLSRNH 422

Query: 210 SAVHEIWEDY-IKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHM-VALAMMGKLYINRT 267
           +   E++++   K      F+    + S      L+ A   L+ M V+      +  N  
Sbjct: 423 TVAMELYKEMKTKGCHPDEFTYNMLIDSLCFRGKLQEALNLLKEMEVSGCARNVITYNTL 482

Query: 268 SEGRLRSSRL-DIPIPLNALPVMKVLRWS--FSDVIHACGRTQNSGLAEQLMLQMQSLGL 324
            +G  ++ R+ +     + + +  V R S  ++ +I    +++    A QLM QM   GL
Sbjct: 483 IDGFCKNKRIAEAEEIFDQMELQGVSRNSVTYNTLIDGLCKSERVEEASQLMDQMIMEGL 542

Query: 325 QPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEA 384
           +P   TY+  +        ++   ++++ M  +  +P   T  TL     KA  ++ A  
Sbjct: 543 RPDKFTYNSLLTYFCKAGDIKKAADIVQTMASDGCEPDIVTYGTLIAGLCKAGRVEAATK 602

Query: 385 LLDQIS-RCTN--PKPFSAFLAACDTMDKPERAIKIFAKMRQKLR-PDIRTYELLFSLFG 440
           LL  I  +  N  P  ++  + A     + + A+++F +M +K   PD  TY+++F    
Sbjct: 603 LLRTIQMKGINLTPHAYNPVIQALFRRKRSKEAVRLFREMIEKAEAPDAVTYKIVFRGLC 662

Query: 441 NVNAPYEEGNMF 452
               P  E   F
Sbjct: 663 QGGGPIGEAVDF 674



 Score = 57.0 bits (136), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 70/297 (23%), Positives = 122/297 (41%), Gaps = 25/297 (8%)

Query: 387 DQISRCTNP--KPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVN 443
           + +SR   P    F+  + A     +   AI +  +M    L PD +T+  +   F    
Sbjct: 185 NMVSRGIRPDVSTFNILIKALCRAHQIRPAILLMEEMEDFGLLPDEKTFTTIMQGF---- 240

Query: 444 APYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDS 503
              EEGN+    D A R+      M       +++++  L+     EG I E +++  + 
Sbjct: 241 --IEEGNL----DGAMRVKE---QMVEAGCVVTNVTVNVLVNGFCKEGRIEEALRFIEEM 291

Query: 504 KTPLG----TPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID-CCSIIR 558
               G      T+N +++ L +      A+E+   M   G  P+  TYN +I   C +  
Sbjct: 292 SLREGFFPDKYTFNMLVNGLSKTGHVKHALEVMDMMLREGFDPDIYTYNSLISGLCKLGE 351

Query: 559 CFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYN 618
             ++   L  M+ RD   P T+TY  +I  L      +EA  L  +++ +GI  DV  YN
Sbjct: 352 VDEAVKVLNQMIERDC-SPNTVTYNTIISTLCKENQVEEATKLALVLTGKGILPDVCTYN 410

Query: 619 TILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
           ++++  C      V   + ++M      PD  T + +        F     EAL +L
Sbjct: 411 SLIQGLCLSRNHTVAMELYKEMKTKGCHPDEFTYNMLIDSLC---FRGKLQEALNLL 464


>gi|449463386|ref|XP_004149415.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 81/377 (21%), Positives = 159/377 (42%), Gaps = 26/377 (6%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           SF+ ++   G+     LA  + ++M + G++PS  T++  I  +     ++    ++  +
Sbjct: 169 SFTTLLIQLGKFDMVDLARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHI 228

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR--C-TNPKPFSAFLAACDTMDKP 411
            + +  P   T  +L +   +   LDLA A+ D++ +  C  N   +S  +    +  + 
Sbjct: 229 FRYDAYPNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRL 288

Query: 412 ERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM--DM 468
           E A+ +  +M QK + P + TY +                + S  D+     A+E+   M
Sbjct: 289 EEAMDMLEEMVQKGIEPTVYTYTI---------------PLVSLCDAGCSSEAVELLGKM 333

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRELIQYF----CDSKTPLGTPTYNTVLHSLVEAQE 524
            +     +  +   L+  L  +G     I  +     D   P  T TYN +++ L     
Sbjct: 334 KKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPT-TVTYNALINQLCVEGR 392

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
              A  IFK M + G  P+  TYN +I C  ++   + A  +   M++ G  P  +TY  
Sbjct: 393 FETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNT 452

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
           LI      G+ + A+ LL+++   G+  D   Y  ++      G+++    +   M ++ 
Sbjct: 453 LIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHG 512

Query: 645 VQPDPSTCHFVFSGYVN 661
           + P+  T   +  GY N
Sbjct: 513 ISPNHVTYTAIIDGYFN 529



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 99/230 (43%), Gaps = 3/230 (1%)

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQE 524
           M ++    + ++   L+  L +EG + E   +++            TY   L SL +A  
Sbjct: 263 MVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGC 322

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
           S  A+E+  +MK  G  PN  T+  +I   S    F+ A  L   M+ DG  P T+TY A
Sbjct: 323 SSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNA 382

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
           LI  L   G F+ A  +   +   G       YN I+K  C  G I     I ++M +  
Sbjct: 383 LINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAG 442

Query: 645 VQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDF 694
             P+  T + +  GY   G  N+AM  L+++    L  +  T  E  S F
Sbjct: 443 SSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGF 492



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 130/627 (20%), Positives = 235/627 (37%), Gaps = 87/627 (13%)

Query: 128 MMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSR 187
           M+  LCK G ++EA  LI     RY  YP    Y S +    + H++  A    D M   
Sbjct: 208 MINILCKKGRVQEA-KLIMSHIFRYDAYPNAFTYTSLILGHCRNHNLDLAFAMFDRMVKD 266

Query: 188 MVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFT----RLRDL 243
               N VTY+ L+     +  L    ++ E+ ++        +   V+++T     L D 
Sbjct: 267 GCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQK------GIEPTVYTYTIPLVSLCDA 320

Query: 244 KSAYETLQHMVALAMMGKLYINRTS----EGRLRSSRLDIPIPL---------------- 283
             + E ++ +  +   G +   +T      G  R  + +I I L                
Sbjct: 321 GCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTY 380

Query: 284 NAL-----------PVMKVLRWSFSDVIHACGRTQNS--------GLAEQLML---QMQS 321
           NAL               + +W  S       +T N         G  ++ M+   +M  
Sbjct: 381 NALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLK 440

Query: 322 LGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDL 381
            G  P+  TY+  I        L N M +L+IM+ N LKP   T   L    S+  +L+ 
Sbjct: 441 AGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEH 500

Query: 382 AEALLDQISR---CTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLR-PDIRTYELLFS 437
           A +L   +       N   ++A +     + K + A+ +F KM +    P  +TY ++ S
Sbjct: 501 ATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMIS 560

Query: 438 LFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELI 497
            F   N+  E  N   +             M +  +  + I+  + +  L   G      
Sbjct: 561 GFSKTNSISEAENFCGK-------------MVKQGLLPNVITYTSFIDGLCRNGRTGLAF 607

Query: 498 QYFCDSKTPLGTP---TYNTVLHSLVEAQESHRA--MEIFKQMKTCGIPPNAATYNIMI- 551
           + F + +     P   TY+++++ L +   +  A    +  ++   G  PN  TY  ++ 
Sbjct: 608 KIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVK 667

Query: 552 DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIP 611
             C   RC+++   +VSM  + G  P    Y AL+         + ALN+   +   G  
Sbjct: 668 GLCGEGRCYEADQLVVSMQ-KKGLQPSEEIYRALLIGECKNLKVESALNIFYSMDTLGFQ 726

Query: 612 HDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEA 671
             +  Y  ++   C++  I+  + I + M +     D      +  G +  G  +  ++ 
Sbjct: 727 LHLSDYKALICALCKENFIEEAQCIFQTMLEKHWNSDEVVWTVLLDGLLKEGETDLCLKL 786

Query: 672 LQVLSMR----------MLCEEVSTLE 688
           L V+  R          ML  E+S L+
Sbjct: 787 LHVMESRNCTLNFQTYVMLARELSALD 813



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 95/209 (45%), Gaps = 4/209 (1%)

Query: 483 LLKALGAEGMIRELIQYFCD--SKTPLGTP--TYNTVLHSLVEAQESHRAMEIFKQMKTC 538
           ++K+   EG ++ + Q+  +  SK   G    ++ T+L  L +      A +++ +M   
Sbjct: 137 MIKSCRNEGEVKRVTQFLSEINSKYDFGYTLCSFTTLLIQLGKFDMVDLARDMYIKMLNS 196

Query: 539 GIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEA 598
           GI P+  T+N MI+        + A  ++S + R   YP   TYT+LI       + D A
Sbjct: 197 GIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHNLDLA 256

Query: 599 LNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
             + D +  +G   + + Y+T++   C +GR++    ++E+M Q  ++P   T       
Sbjct: 257 FAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVS 316

Query: 659 YVNCGFHNSAMEALQVLSMRMLCEEVSTL 687
             + G  + A+E L  +  R     + T 
Sbjct: 317 LCDAGCSSEAVELLGKMKKRGCVPNIQTF 345


>gi|125539409|gb|EAY85804.1| hypothetical protein OsI_07165 [Oryza sativa Indica Group]
          Length = 649

 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 83/338 (24%), Positives = 139/338 (41%), Gaps = 15/338 (4%)

Query: 314 QLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVEC 373
           +LM +M   G  P+  T+   I ++  +  + + +EVL+ M++   +P       +    
Sbjct: 313 ELMAEMVRKGCSPNEATFSMLISSLCQNNLVDSAVEVLEQMEKYGCEPDTVNYNIIINSL 372

Query: 374 SKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYE 433
           S+   +D A  LL+ +    +   F+A L      ++   A ++ A+M    R D    E
Sbjct: 373 SERGRVDDALRLLNSMVCKPDALGFNAVLKGFCRAERWHDASELIAQM---FRDDCPLIE 429

Query: 434 LLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMI 493
           + F++  +        N  +QV            M R       ++  +LL     +G++
Sbjct: 430 MTFNILIDTLCQNGLVNYATQVFE---------QMPRYRCTPDIVTYSSLLNGFSEQGLV 480

Query: 494 RELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC 553
              IQ F          +YN VL  L  A     A E+  +M     PPN  T+NI+I+ 
Sbjct: 481 EVAIQLFRSMPCKPDIFSYNAVLKGLCRAARWEDAGELIAEMVGKDCPPNEVTFNILINS 540

Query: 554 CSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHD 613
                    A  ++  M   G  P   TY ALI    + G  D+AL LL  +S +    D
Sbjct: 541 LCQKGLVDRAIEVLEQMPNYGSTPDIFTYNALINGFSEQGRLDDALKLLSTMSCK---PD 597

Query: 614 VLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
            + YN+ LK  C   R    E ++ +M +NK  P+  T
Sbjct: 598 AISYNSTLKGLCRAERWQDAEELVAEMLRNKCTPNEVT 635



 Score = 62.8 bits (151), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 78/371 (21%), Positives = 155/371 (41%), Gaps = 23/371 (6%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTI-ATLS 370
           A QL+ QM   G  P    Y   I        +   +++L  M     KP      A L 
Sbjct: 244 AVQLLDQMPRYGCTPDVVIYSTLINGFSEQGHVDQALDLLNTML---CKPNTVCYNAALK 300

Query: 371 VECSKALELDLAEALLDQISRCTNPK--PFSAFLAACDTMDKPERAIKIFAKMRQ-KLRP 427
             C      D+ E + + + +  +P    FS  +++    +  + A+++  +M +    P
Sbjct: 301 GLCIAERWEDIGELMAEMVRKGCSPNEATFSMLISSLCQNNLVDSAVEVLEQMEKYGCEP 360

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL 487
           D   Y ++      +N+  E G    +VD A R+  +   + + +    +  +K   +A 
Sbjct: 361 DTVNYNII------INSLSERG----RVDDALRL--LNSMVCKPDALGFNAVLKGFCRAE 408

Query: 488 GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATY 547
                   + Q F D   PL   T+N ++ +L +    + A ++F+QM      P+  TY
Sbjct: 409 RWHDASELIAQMFRDD-CPLIEMTFNILIDTLCQNGLVNYATQVFEQMPRYRCTPDIVTY 467

Query: 548 NIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSL 607
           + +++  S     + A  L   M      P   +Y A++K L     +++A  L+  +  
Sbjct: 468 SSLLNGFSEQGLVEVAIQLFRSM---PCKPDIFSYNAVLKGLCRAARWEDAGELIAEMVG 524

Query: 608 EGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNS 667
           +  P + + +N ++   C+KG +D    ++EQM      PD  T + + +G+   G  + 
Sbjct: 525 KDCPPNEVTFNILINSLCQKGLVDRAIEVLEQMPNYGSTPDIFTYNALINGFSEQGRLDD 584

Query: 668 AMEALQVLSMR 678
           A++ L  +S +
Sbjct: 585 ALKLLSTMSCK 595



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/194 (23%), Positives = 82/194 (42%), Gaps = 11/194 (5%)

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLG-TP---TYNTVLHSLVEAQES 525
           RN    + ++    +++    G++   +Q   D     G TP    Y+T+++   E    
Sbjct: 218 RNRCPPNEVTFATQIRSFCQNGLLDRAVQLL-DQMPRYGCTPDVVIYSTLINGFSEQGHV 276

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
            +A+++   M      PN   YN  +    I   ++    L++ MVR G  P   T++ L
Sbjct: 277 DQALDLLNTMLC---KPNTVCYNAALKGLCIAERWEDIGELMAEMVRKGCSPNEATFSML 333

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           I  L      D A+ +L+ +   G   D + YN I+    E+GR+D    ++  M     
Sbjct: 334 ISSLCQNNLVDSAVEVLEQMEKYGCEPDTVNYNIIINSLSERGRVDDALRLLNSM---VC 390

Query: 646 QPDPSTCHFVFSGY 659
           +PD    + V  G+
Sbjct: 391 KPDALGFNAVLKGF 404



 Score = 46.6 bits (109), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 58/121 (47%), Gaps = 3/121 (2%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TY  ++     +     A+ +   M    + P+  TYN ++    I + ++ A  L++ M
Sbjct: 160 TYTALIDGYCRSGRLDDALRLIASMP---VAPDTYTYNTVLKGLCIAKKWEEAEELMAEM 216

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           +R+   P  +T+   I+     G  D A+ LLD +   G   DV++Y+T++    E+G +
Sbjct: 217 IRNRCPPNEVTFATQIRSFCQNGLLDRAVQLLDQMPRYGCTPDVVIYSTLINGFSEQGHV 276

Query: 631 D 631
           D
Sbjct: 277 D 277



 Score = 41.2 bits (95), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 65/297 (21%), Positives = 125/297 (42%), Gaps = 32/297 (10%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A +++ QM+  G +P +  Y+  I ++ S+RG  +  + L+++     KP       +  
Sbjct: 346 AVEVLEQMEKYGCEPDTVNYNIIINSL-SERGRVD--DALRLLNSMVCKPDALGFNAVLK 402

Query: 372 ECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKP---ERAIKIFAKM-RQKLRP 427
              +A     A  L+ Q+ R   P     F    DT+ +      A ++F +M R +  P
Sbjct: 403 GFCRAERWHDASELIAQMFRDDCPLIEMTFNILIDTLCQNGLVNYATQVFEQMPRYRCTP 462

Query: 428 DIRTYELLFSLF---GNVNAPYE-------EGNMFSQ-------VDSAKRINAIEM--DM 468
           DI TY  L + F   G V    +       + ++FS          +A+  +A E+  +M
Sbjct: 463 DIVTYSSLLNGFSEQGLVEVAIQLFRSMPCKPDIFSYNAVLKGLCRAARWEDAGELIAEM 522

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQES 525
              +   + ++   L+ +L  +G++   I+          TP   TYN +++      E 
Sbjct: 523 VGKDCPPNEVTFNILINSLCQKGLVDRAIEVLEQMPNYGSTPDIFTYNALINGF---SEQ 579

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTY 582
            R  +  K + T    P+A +YN  +        ++ A  LV+ M+R+   P  +T+
Sbjct: 580 GRLDDALKLLSTMSCKPDAISYNSTLKGLCRAERWQDAEELVAEMLRNKCTPNEVTF 636


>gi|359475765|ref|XP_002273555.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 935

 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 78/397 (19%), Positives = 162/397 (40%), Gaps = 30/397 (7%)

Query: 271 RLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHT 330
           R++   +   IP+N +        +++ +IH   +      A +++  M +LG +P+S T
Sbjct: 265 RIKDVMVSCGIPINLI--------TYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRT 316

Query: 331 YDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQIS 390
           +   I     +  +   +E+L  M++ NL P   +   +        +L LA  LL++++
Sbjct: 317 FCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMT 376

Query: 391 RCTNPKP----FSAFLAACDTMDKPERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAP 445
             +  KP    +S  +    +  + E A ++   M    + PDI  Y  + S        
Sbjct: 377 F-SGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCL------ 429

Query: 446 YEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYF---CD 502
                  S+    +  +   +++    ++   ++    +      G + E  +YF    D
Sbjct: 430 -------SKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLD 482

Query: 503 SKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKS 562
                  P Y  +++   +A     A+ IF+ +   G+ P+  T +  I         + 
Sbjct: 483 HGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQE 542

Query: 563 ASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILK 622
           A  + S +   G  P   TY++LI      G+ ++A  L D + L+GI  ++ +YN ++ 
Sbjct: 543 ALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVD 602

Query: 623 KACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
             C+ G I     + + M +  ++PD  T   +  GY
Sbjct: 603 GLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGY 639



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 119/557 (21%), Positives = 215/557 (38%), Gaps = 95/557 (17%)

Query: 118 IGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHA 177
           I +N   Y +++  LCK G +E+A+ ++  +    G  P    +   +    + H+M  A
Sbjct: 275 IPINLITYNVLIHGLCKFGKMEKAAEILKGM-ITLGCKPNSRTFCLLIEGYCREHNMGRA 333

Query: 178 NLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSF 237
              LD M+ R +  + V+Y  ++      K+LS  +++ E                  +F
Sbjct: 334 LELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEK----------------MTF 377

Query: 238 TRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSR--LDIPIPLNALPVMKVLRWS 295
           + L+     Y TL       +MG       SEGR+  +R  LD        P +    + 
Sbjct: 378 SGLKPNVVVYSTL-------IMG-----YASEGRIEEARRLLDGMSCSGVAPDI----FC 421

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           ++ +I    +      A   +L++Q  GL+P + T+  FI        +    +    M 
Sbjct: 422 YNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEML 481

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEAL-----LDQISRCTNPKPFSAFLAACDTMDK 410
            + L P +     L     KA   +L EAL     L  +    + +  SAF+       +
Sbjct: 482 DHGLMPNNPLYTVLINGHFKA--GNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGR 539

Query: 411 PERAIKIFAKMRQK-LRPDIRTYELLFSLF---GNVNAPYEEGNMFSQVDSAKRINAIEM 466
            + A+K+F+++++K L PD+ TY  L S F   G V   +E                   
Sbjct: 540 VQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFE------------------- 580

Query: 467 DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESH 526
                   H  + +K +   +                        YN ++  L ++ +  
Sbjct: 581 -------LHDEMCLKGIAPNI----------------------FIYNALVDGLCKSGDIQ 611

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
           RA ++F  M   G+ P++ TY+ MID          A +L   M   G  P +  Y AL+
Sbjct: 612 RARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALV 671

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
                 GD ++A+NL   +  +G     L +NT++   C+  +I     + ++M   ++ 
Sbjct: 672 HGCCKEGDMEKAMNLFREMLQKGFA-TTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIM 730

Query: 647 PDPSTCHFVFSGYVNCG 663
           PD  T   V   +   G
Sbjct: 731 PDHVTYTTVIDWHCKAG 747



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 91/404 (22%), Positives = 166/404 (41%), Gaps = 34/404 (8%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +F  +I    R  N G A +L+ +M+   L PS+ +Y   I  +   + L    ++L+ M
Sbjct: 316 TFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKM 375

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDK 410
             + LKP     +TL +  +    ++ A  LLD +S C+   P    ++A ++      K
Sbjct: 376 TFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMS-CSGVAPDIFCYNAIISCLSKAGK 434

Query: 411 PERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
            E A     +++ + L+PD  T+      +       E    F ++        ++  + 
Sbjct: 435 MEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEM--------LDHGLM 486

Query: 470 RNN-----IQHSHISMKNLLKALGAEGMIREL--IQYFCDSKTPLGTPTYNTVLHSLVEA 522
            NN     + + H    NL++AL    + R L  +    D +T       +  +H L++ 
Sbjct: 487 PNNPLYTVLINGHFKAGNLMEALS---IFRHLHALGVLPDVQT------CSAFIHGLLKN 537

Query: 523 QESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTY 582
                A+++F ++K  G+ P+  TY+ +I         + A  L   M   G  P    Y
Sbjct: 538 GRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIY 597

Query: 583 TALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642
            AL+  L   GD   A  L D +  +G+  D + Y+T++   C+   +     +  +M  
Sbjct: 598 NALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPS 657

Query: 643 NKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
             VQP      FV++  V+       ME    L   ML +  +T
Sbjct: 658 KGVQPH----SFVYNALVHGCCKEGDMEKAMNLFREMLQKGFAT 697



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 74/331 (22%), Positives = 141/331 (42%), Gaps = 19/331 (5%)

Query: 304 GRTQNSGLAEQLML--QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKP 361
           G  +   L E L +   + +LG+ P   T   FI  ++ +  ++  ++V   +++  L P
Sbjct: 498 GHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVP 557

Query: 362 QDSTIATLSVECSKALELDLAEALLDQIS-RCTNPKPFSAFLAACDTMDKP---ERAIKI 417
              T ++L     K  E++ A  L D++  +   P  F  + A  D + K    +RA K+
Sbjct: 558 DVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIF-IYNALVDGLCKSGDIQRARKL 616

Query: 418 FAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHS 476
           F  M +K L PD  TY  +   +       E  ++F ++ S             N + H 
Sbjct: 617 FDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSK---GVQPHSFVYNALVHG 673

Query: 477 HISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMK 536
                ++ KA+    + RE++Q     K    T ++NT++    ++ +   A ++F++M 
Sbjct: 674 CCKEGDMEKAMN---LFREMLQ-----KGFATTLSFNTLIDGYCKSCKIQEASQLFQEMI 725

Query: 537 TCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFD 596
              I P+  TY  +ID        + A+ L   M        T+TYT+L+      G   
Sbjct: 726 AKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSS 785

Query: 597 EALNLLDLVSLEGIPHDVLLYNTILKKACEK 627
           E   L + +  +G+  D + Y  ++   C++
Sbjct: 786 EVFALFEKMVAKGVKPDEVTYGLVIYAHCKE 816



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 80/385 (20%), Positives = 141/385 (36%), Gaps = 24/385 (6%)

Query: 319 MQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALE 378
           M   GL P+++TY      +   + +       + MQ+  LKP  +  + L     +  +
Sbjct: 200 MGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGD 259

Query: 379 LDLAEALLDQISRCTNPK---PFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYEL 434
           +D    + D +  C  P     ++  +       K E+A +I   M     +P+ RT+ L
Sbjct: 260 IDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCL 319

Query: 435 LFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM--DMARNNIQHSHISMKNLLKAL---GA 489
           L      +     E NM           A+E+  +M + N+  S +S   ++  L     
Sbjct: 320 L------IEGYCREHNMG---------RALELLDEMEKRNLVPSAVSYGAMINGLCHCKD 364

Query: 490 EGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNI 549
             +  +L++    S        Y+T++           A  +   M   G+ P+   YN 
Sbjct: 365 LSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNA 424

Query: 550 MIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEG 609
           +I C S     + AS  +  +   G  P  +T+ A I      G   EA    D +   G
Sbjct: 425 IISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHG 484

Query: 610 IPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAM 669
           +  +  LY  ++    + G +     I   +H   V PD  TC     G +  G    A+
Sbjct: 485 LMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEAL 544

Query: 670 EALQVLSMRMLCEEVSTLEEKRSDF 694
           +    L  + L  +V T     S F
Sbjct: 545 KVFSELKEKGLVPDVFTYSSLISGF 569



 Score = 57.0 bits (136), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 88/213 (41%), Gaps = 18/213 (8%)

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAM 529
           RN    S +    L+ +    GM+ E    F  +K        +++L SL+         
Sbjct: 149 RNYGGSSPVVFDILIDSYKRMGMLDEAANVFFVAKN-------DSILISLIRCNS----- 196

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
              + M   G+ PN  TY I+       +    A      M + G  P     +ALI   
Sbjct: 197 --LRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGF 254

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649
           +  GD DE L + D++   GIP +++ YN ++   C+ G+++    I++ M     +P+ 
Sbjct: 255 MREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNS 314

Query: 650 STCHFVFSGYVNCGFHN--SAMEALQVLSMRML 680
            T   +  GY  C  HN   A+E L  +  R L
Sbjct: 315 RTFCLLIEGY--CREHNMGRALELLDEMEKRNL 345


>gi|224056220|ref|XP_002298762.1| predicted protein [Populus trichocarpa]
 gi|222846020|gb|EEE83567.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 87/377 (23%), Positives = 161/377 (42%), Gaps = 28/377 (7%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           ++++ +I  C R      A  +   M+S+G  P   TY+  +      R  +  MEVL+ 
Sbjct: 105 YTYNTLITCCRRGSLHEEAAAVFKDMKSMGFVPDKVTYNALLDVYGKSRRTKEAMEVLRE 164

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT---NPKPFSAFLAACDTMDK 410
           M+ N   P   T  +L    ++   L  A  L +Q+       +   ++  L+      K
Sbjct: 165 MEVNGCSPSIVTYNSLISAYARDGLLKEAMELKNQMVEGGINLDVFTYTTLLSGFVRAGK 224

Query: 411 PERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
            E A+++FA+MR    +P+I T+  L  + GN     E   +F ++ ++  +  I     
Sbjct: 225 DESAMRVFAEMRAAGCKPNICTFNALIKMHGNRGKFAEMMKVFEEIKNSCCVPDI----- 279

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESH 526
                   ++   LL   G  GM  E+   F + K     P   TYNT++ +        
Sbjct: 280 --------VTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTYNTLISAYSRCGSFD 331

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
           +AM+I+K+M   GI P+ +TYN ++   +    ++ +  + + M      P  +TY +L+
Sbjct: 332 QAMDIYKRMLEAGITPDLSTYNAVLAALARGGLWEQSEKIFAEMKDGRCKPNELTYCSLL 391

Query: 587 KILLDYGDFDEALNLLDLVSLEGI-PHDVLLYNTILKKACEKGRIDVI---EFIIEQMHQ 642
               +  +    L L + +    I PH VLL   +L  +    + D++   E    ++ +
Sbjct: 392 HAYANGKEIGRMLALAEEICSGVIEPHAVLLKTLVLVNS----KCDLLVEAEVAFLELKR 447

Query: 643 NKVQPDPSTCHFVFSGY 659
               PD ST + + S Y
Sbjct: 448 KGFSPDLSTLNAMLSIY 464



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 77/382 (20%), Positives = 143/382 (37%), Gaps = 60/382 (15%)

Query: 299 VIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNN 358
           +I   G+     +A  L+  +   G     + Y   I A VS+   R  + V K M++  
Sbjct: 4   IISMLGKEGKVSVAASLLNDLHKDGFGLDVYAYTSLITACVSNGRYREAVMVFKKMEEEG 63

Query: 359 LKPQDSTI-ATLSVECSKALELDLAEALLDQISRCT---NPKPFSAFLAACDTMDKPERA 414
            KP   T    L+V     +  +  + L + +       +   ++  +  C      E A
Sbjct: 64  CKPTLITYNVILNVYGKMGMPWNKIKGLFEGMKNAGVLPDEYTYNTLITCCRRGSLHEEA 123

Query: 415 IKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM--DMARN 471
             +F  M+     PD  TY  L  ++G                S +   A+E+  +M  N
Sbjct: 124 AAVFKDMKSMGFVPDKVTYNALLDVYGK---------------SRRTKEAMEVLREMEVN 168

Query: 472 NIQHSHISMKNLLKALGAEGMIRELIQY---FCDSKTPLGTPTYNTVLHSLVEAQESHRA 528
               S ++  +L+ A   +G+++E ++      +    L   TY T+L   V A +   A
Sbjct: 169 GCSPSIVTYNSLISAYARDGLLKEAMELKNQMVEGGINLDVFTYTTLLSGFVRAGKDESA 228

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
           M +F +M+  G  PN  T                                   + ALIK+
Sbjct: 229 MRVFAEMRAAGCKPNICT-----------------------------------FNALIKM 253

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
             + G F E + + + +       D++ +NT+L    + G    +  + ++M +    P+
Sbjct: 254 HGNRGKFAEMMKVFEEIKNSCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPE 313

Query: 649 PSTCHFVFSGYVNCGFHNSAME 670
             T + + S Y  CG  + AM+
Sbjct: 314 RDTYNTLISAYSRCGSFDQAMD 335



 Score = 72.4 bits (176), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 110/554 (19%), Positives = 201/554 (36%), Gaps = 93/554 (16%)

Query: 133 CKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKN 192
           C+ G L E +  ++   +  G  P    YN+ L    K      A   L  M+      +
Sbjct: 114 CRRGSLHEEAAAVFKDMKSMGFVPDKVTYNALLDVYGKSRRTKEAMEVLREMEVNGCSPS 173

Query: 193 EVTYTELLKLAVWQKNLSAVHEIWEDYIK-HYSLSIFSLRKFVWSFTRLRDLKSAYETLQ 251
            VTY  L+        L    E+    ++   +L +F+    +  F R    +SA     
Sbjct: 174 IVTYNSLISAYARDGLLKEAMELKNQMVEGGINLDVFTYTTLLSGFVRAGKDESAMRVFA 233

Query: 252 HMVALA---------MMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHA 302
            M A            + K++ NR     +     +I    N+  V  ++ W  + ++  
Sbjct: 234 EMRAAGCKPNICTFNALIKMHGNRGKFAEMMKVFEEIK---NSCCVPDIVTW--NTLLAV 288

Query: 303 CGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQ 362
            G+         +  +M+  G  P   TY+  I A          M++ K M +  + P 
Sbjct: 289 FGQNGMDSEVSGVFKEMKRAGFVPERDTYNTLISAYSRCGSFDQAMDIYKRMLEAGITPD 348

Query: 363 DSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMR 422
            ST                                ++A LAA       E++ KIFA+M+
Sbjct: 349 LST--------------------------------YNAVLAALARGGLWEQSEKIFAEMK 376

Query: 423 Q-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMK 481
             + +P+  TY  L   + N     E G M           A+  ++    I+   + +K
Sbjct: 377 DGRCKPNELTYCSLLHAYANGK---EIGRML----------ALAEEICSGVIEPHAVLLK 423

Query: 482 NLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIP 541
            L+           L+   CD                LVEA+ +      F ++K  G  
Sbjct: 424 TLV-----------LVNSKCD---------------LLVEAEVA------FLELKRKGFS 451

Query: 542 PNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNL 601
           P+ +T N M+      + F   + +++ M   GF P   TY +L+ +     +F+ +  +
Sbjct: 452 PDLSTLNAMLSIYGRRQMFTKTNEILNFMNESGFTPSLATYNSLMYMHSRSENFERSEEV 511

Query: 602 LDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVN 661
           L  +  +GI  D + YNT++   C  GR+     I  +M ++ + PD  T +   + Y  
Sbjct: 512 LKEILAKGIKPDTISYNTVIFAYCRNGRMKEASRIFSEMRESGLVPDVITYNTFVASYAA 571

Query: 662 CGFHNSAMEALQVL 675
                 A++ ++ +
Sbjct: 572 DSMFEDAIDVVRYM 585



 Score = 70.5 bits (171), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 58/277 (20%), Positives = 112/277 (40%), Gaps = 45/277 (16%)

Query: 398 FSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVD 456
           +++ + AC +  +   A+ +F KM ++  +P + TY ++ +++G +  P+ +        
Sbjct: 36  YTSLITACVSNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNK-------- 87

Query: 457 SAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVL 516
                                  +K L + +   G++ +  +Y           TYNT++
Sbjct: 88  -----------------------IKGLFEGMKNAGVLPD--EY-----------TYNTLI 111

Query: 517 HSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFY 576
                      A  +FK MK+ G  P+  TYN ++D     R  K A  ++  M  +G  
Sbjct: 112 TCCRRGSLHEEAAAVFKDMKSMGFVPDKVTYNALLDVYGKSRRTKEAMEVLREMEVNGCS 171

Query: 577 PQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFI 636
           P  +TY +LI      G   EA+ L + +   GI  DV  Y T+L      G+ +    +
Sbjct: 172 PSIVTYNSLISAYARDGLLKEAMELKNQMVEGGINLDVFTYTTLLSGFVRAGKDESAMRV 231

Query: 637 IEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
             +M     +P+  T + +   + N G     M+  +
Sbjct: 232 FAEMRAAGCKPNICTFNALIKMHGNRGKFAEMMKVFE 268



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 63/316 (19%), Positives = 135/316 (42%), Gaps = 24/316 (7%)

Query: 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
           R +++ +I A  R  +   A  +  +M   G+ P   TY+  + A+          ++  
Sbjct: 314 RDTYNTLISAYSRCGSFDQAMDIYKRMLEAGITPDLSTYNAVLAALARGGLWEQSEKIFA 373

Query: 353 IMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNP-KPFSAFL-------AA 404
            M+    KP + T  +L    +   E+    AL ++I  C+   +P +  L       + 
Sbjct: 374 EMKDGRCKPNELTYCSLLHAYANGKEIGRMLALAEEI--CSGVIEPHAVLLKTLVLVNSK 431

Query: 405 CDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINA 463
           CD + + E A   F ++++K   PD+ T   + S++G      +   + + ++ +    +
Sbjct: 432 CDLLVEAEVA---FLELKRKGFSPDLSTLNAMLSIYGRRQMFTKTNEILNFMNESGFTPS 488

Query: 464 IEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQ 523
           +      N++ + H   +N  +   +E +++E++           T +YNTV+ +     
Sbjct: 489 LA---TYNSLMYMHSRSENFER---SEEVLKEILA----KGIKPDTISYNTVIFAYCRNG 538

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
               A  IF +M+  G+ P+  TYN  +   +    F+ A  +V  M++ G  P   TY 
Sbjct: 539 RMKEASRIFSEMRESGLVPDVITYNTFVASYAADSMFEDAIDVVRYMIKHGCKPNQNTYN 598

Query: 584 ALIKILLDYGDFDEAL 599
           +++     +   D+A+
Sbjct: 599 SVVDGYCKHNHRDDAI 614


>gi|75194072|sp|Q9S7R4.1|PP125_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g74900, mitochondrial; AltName: Full=Protein
           ORGANELLE TRANSCRIPT PROCESSING DEFECT 43; Flags:
           Precursor
 gi|5882733|gb|AAD55286.1|AC008263_17 Contains a PF|01535 DUF17 domain [Arabidopsis thaliana]
 gi|12323885|gb|AAG51911.1|AC013258_5 hypothetical protein; 69434-67986 [Arabidopsis thaliana]
          Length = 482

 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/311 (23%), Positives = 126/311 (40%), Gaps = 19/311 (6%)

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKP-- 411
           M+   + P   T A ++   + A + D A  L   +      +  ++F    D + K   
Sbjct: 117 MRSLRIGPSPKTFAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLCKSKR 176

Query: 412 -ERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
            E+A ++F  +R +   D  TY ++              N +  +    +   +  +M  
Sbjct: 177 VEKAYELFRALRGRFSVDTVTYNVIL-------------NGWCLIKRTPKALEVLKEMVE 223

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKT---PLGTPTYNTVLHSLVEAQESHR 527
             I  +  +   +LK     G IR   ++F + K     +   TY TV+H    A E  R
Sbjct: 224 RGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKR 283

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A  +F +M   G+ P+ ATYN MI         ++A  +   MVR G+ P   TY  LI+
Sbjct: 284 ARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIR 343

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
            L   G+F     L+  +  EG   +   YN +++   E   ++    + E+M      P
Sbjct: 344 GLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGSGDCLP 403

Query: 648 DPSTCHFVFSG 658
           +  T + + SG
Sbjct: 404 NLDTYNILISG 414



 Score = 66.2 bits (160), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 76/165 (46%)

Query: 509 TPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVS 568
           T TYN +L+     + + +A+E+ K+M   GI PN  TYN M+         + A     
Sbjct: 195 TVTYNVILNGWCLIKRTPKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFL 254

Query: 569 MMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
            M +       +TYT ++      G+   A N+ D +  EG+   V  YN +++  C+K 
Sbjct: 255 EMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKD 314

Query: 629 RIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
            ++    + E+M +   +P+ +T + +  G  + G  +   E +Q
Sbjct: 315 NVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQ 359


>gi|294883700|ref|XP_002771031.1| pentatricopeptide repeat-containing protein, putative [Perkinsus
           marinus ATCC 50983]
 gi|239874237|gb|EER02847.1| pentatricopeptide repeat-containing protein, putative [Perkinsus
           marinus ATCC 50983]
          Length = 941

 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 96/401 (23%), Positives = 184/401 (45%), Gaps = 37/401 (9%)

Query: 274 SSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDG 333
           + RLD+ I    +P +     SF+ V+    +  N   A + M +MQ  G  P+  TY+ 
Sbjct: 282 AGRLDVSITGAGVPNV----VSFNTVMKGHLKQGNMRQARKTMREMQEAGFPPNVITYNE 337

Query: 334 FIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLS---VECSKALELDLAEALLDQIS 390
            + ++V  +  R   EV++ M+ N L P   T + L       S A ++     L++++ 
Sbjct: 338 LLHSMVQGKDKRGIWEVVEEMKANGLPPNKVTCSILLKALTSHSHASDVVRTMELVERMR 397

Query: 391 RCTNPKPFSAFLAACDTMDKPERAIKIFA-KMRQKL-----RPDIRT-YELLFSLFGNVN 443
              +   FS+ + AC  + K    + I + K++Q +      P +   Y     L   + 
Sbjct: 398 GEMDEVLFSSVIEACIRIGK----LDILSNKLQQYILVGSQGPMVGCRYTAGGGLVKGLT 453

Query: 444 APYEEGNMFSQVDSAK---RINAIEMDMARNNIQHSHISMKNLLKAL-------GAEGMI 493
           AP   G+M      AK   R+ ++  +M +  ++ + I++  ++ AL        A  +I
Sbjct: 454 AP-TYGSMIKAYGHAKDLRRVWSLWSEMRQRAVKPTAITLGCMVDALVTNRYPEDALSLI 512

Query: 494 RELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC 553
            E++    D    + T  Y+TVL     +++  R  +I+++M++  IP N  ++N ++D 
Sbjct: 513 HEMLNT-PDCADCVNTIVYSTVLKGFALSKQVDRVFDIYQEMRSNKIPLNTVSFNTIMDA 571

Query: 554 CSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL-DL--VSLEG- 609
           C+     +  S +   M   G  P  +TY+ ++K     GD D A ++L D+  VS  G 
Sbjct: 572 CARSGSMERVSDIFREMDEQGIEPDIITYSTVVKGYCLAGDVDTAFSVLRDMSGVSRRGG 631

Query: 610 ---IPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
                 D ++YN++L    ++ R+D    ++++M  N V P
Sbjct: 632 RKKFAPDEIMYNSLLDGCAKQHRVDQALQLLDEMRANGVAP 672



 Score = 48.5 bits (114), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 64/142 (45%), Gaps = 6/142 (4%)

Query: 90  FFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFL- 148
           F  I++ CARS     V + +R M+E+ I  +   Y  +++  C  G ++ A +++  + 
Sbjct: 565 FNTIMDACARSGSMERVSDIFREMDEQGIEPDIITYSTVVKGYCLAGDVDTAFSVLRDMS 624

Query: 149 -----GERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLA 203
                G R    P   +YNS L  CAK H +  A   LD M +  V  +  T + L+KL 
Sbjct: 625 GVSRRGGRKKFAPDEIMYNSLLDGCAKQHRVDQALQLLDEMRANGVAPSNYTLSILVKLL 684

Query: 204 VWQKNLSAVHEIWEDYIKHYSL 225
              + L     + ED    YS 
Sbjct: 685 GRARRLLEAFNMVEDLSTAYSF 706



 Score = 47.0 bits (110), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 109/536 (20%), Positives = 197/536 (36%), Gaps = 77/536 (14%)

Query: 156 PILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEI 215
           P +  +N+ +    K  +M  A   +  M       N +TY ELL   V  K+   + E+
Sbjct: 295 PNVVSFNTVMKGHLKQGNMRQARKTMREMQEAGFPPNVITYNELLHSMVQGKDKRGIWEV 354

Query: 216 WEDY----IKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGR 271
            E+     +    ++   L K + S +   D+    E ++ M     M ++  +   E  
Sbjct: 355 VEEMKANGLPPNKVTCSILLKALTSHSHASDVVRTMELVERM--RGEMDEVLFSSVIEAC 412

Query: 272 LRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTY 331
           +R  +LDI   L+      +L  S   ++  C  T   GL + L           ++ TY
Sbjct: 413 IRIGKLDI---LSNKLQQYILVGSQGPMV-GCRYTAGGGLVKGL-----------TAPTY 457

Query: 332 DGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR 391
              I+A    + LR    +   M+Q  +KP   T+              + +AL+     
Sbjct: 458 GSMIKAYGHAKDLRRVWSLWSEMRQRAVKPTAITLGC------------MVDALV----- 500

Query: 392 CTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNM 451
            TN  P  A     + ++ P+ A  +          +   Y  +   F           +
Sbjct: 501 -TNRYPEDALSLIHEMLNTPDCADCV----------NTIVYSTVLKGFA----------L 539

Query: 452 FSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP- 510
             QVD   R+  I  +M  N I  + +S   ++ A    G +  +   F +       P 
Sbjct: 540 SKQVD---RVFDIYQEMRSNKIPLNTVSFNTIMDACARSGSMERVSDIFREMDEQGIEPD 596

Query: 511 --TYNTVLHSLVEAQESHRAMEIFKQMKTCG-------IPPNAATYNIMIDCCSIIRCFK 561
             TY+TV+     A +   A  + + M             P+   YN ++D C+      
Sbjct: 597 IITYSTVVKGYCLAGDVDTAFSVLRDMSGVSRRGGRKKFAPDEIMYNSLLDGCAKQHRVD 656

Query: 562 SASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL-DLVSLEGIPHDVLLYNTI 620
            A  L+  M  +G  P   T + L+K+L       EA N++ DL +      +V +Y  +
Sbjct: 657 QALQLLDEMRANGVAPSNYTLSILVKLLGRARRLLEAFNMVEDLSTAYSFRANVHVYTCL 716

Query: 621 LKKACEKGRIDVIEFIIEQMHQN-KVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
           ++      ++     + + M Q  +V PD  T   +  G   C + N    A +V+
Sbjct: 717 IQACVHNKQLQRAMKLHDAMIQEYRVDPDQKTYAVLARG---CIYSNQLEMAAKVV 769


>gi|356517404|ref|XP_003527377.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Glycine max]
          Length = 696

 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 79/358 (22%), Positives = 153/358 (42%), Gaps = 22/358 (6%)

Query: 299 VIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNN 358
           VI A G +  +  AE L  +++  G +P +  Y+  ++  V    L++   V+  M++  
Sbjct: 298 VILALGNSGRTHEAEALFEEIRENGSEPRTRAYNALLKGYVKTGSLKDAEFVVSEMEKAG 357

Query: 359 LKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDKPERA 414
           +KP + T + L    + A   + A  +L ++   +N +P    +S  LA+     + +++
Sbjct: 358 VKPDEQTYSLLIDAYAHAGRWESARIVLKEM-EASNVEPNSYVYSRILASYRDKGEWQKS 416

Query: 415 IKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNI 473
            ++   M+   ++PD   Y ++   FG  N           +D A    A    M    I
Sbjct: 417 FQVLKDMKSNGVQPDRHFYNVMIDTFGKYNC----------LDHAM---ATFERMLSEGI 463

Query: 474 QHSHISMKNLLK---ALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAME 530
           +   ++   L+      G   M  EL              TYN +++S+ E Q   +   
Sbjct: 464 RPDTVTWNTLINCHCKSGRHNMAEELFGEMQQRGYSPCITTYNIMINSMGEQQRWEQVSL 523

Query: 531 IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590
              +M++ G+ PN+ TY  ++D       F  A   + ++   GF P +  Y ALI    
Sbjct: 524 FLSKMQSQGLLPNSITYTTLVDVYGKSGRFSDAIECLEVLKSTGFKPTSTMYNALINAYA 583

Query: 591 DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
             G  + A+N   L++ EG+   +L  N+++    E  R      +++ M +N ++PD
Sbjct: 584 QRGLSELAVNAFRLMTTEGLTPSLLALNSLINAFGEDRRDAEAFAVLQYMKENNIEPD 641



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 83/388 (21%), Positives = 156/388 (40%), Gaps = 53/388 (13%)

Query: 295 SFSDVIHACGRTQ--NSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
           ++S +I    R+   +S + ++L  ++++  ++   H  +  I            M  L 
Sbjct: 222 NYSSIIQYLTRSNKIDSPILQKLYTEIETDKIEIDGHLMNDIILGFSKAGDPTRAMRFLA 281

Query: 353 IMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTM 408
           + Q N L P+ ST+  + +    +     AEAL ++I R    +P    ++A L      
Sbjct: 282 MAQSNGLNPKPSTLVAVILALGNSGRTHEAEALFEEI-RENGSEPRTRAYNALLKGYVKT 340

Query: 409 DKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMD 467
              + A  + ++M +  ++PD +TY LL   + +            + +SA RI   EM+
Sbjct: 341 GSLKDAEFVVSEMEKAGVKPDEQTYSLLIDAYAHA----------GRWESA-RIVLKEME 389

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHR 527
            A N   +S++                                 Y+ +L S  +  E  +
Sbjct: 390 -ASNVEPNSYV---------------------------------YSRILASYRDKGEWQK 415

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           + ++ K MK+ G+ P+   YN+MID      C   A A    M+ +G  P T+T+  LI 
Sbjct: 416 SFQVLKDMKSNGVQPDRHFYNVMIDTFGKYNCLDHAMATFERMLSEGIRPDTVTWNTLIN 475

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
                G  + A  L   +   G    +  YN ++    E+ R + +   + +M    + P
Sbjct: 476 CHCKSGRHNMAEELFGEMQQRGYSPCITTYNIMINSMGEQQRWEQVSLFLSKMQSQGLLP 535

Query: 648 DPSTCHFVFSGYVNCGFHNSAMEALQVL 675
           +  T   +   Y   G  + A+E L+VL
Sbjct: 536 NSITYTTLVDVYGKSGRFSDAIECLEVL 563



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 68/339 (20%), Positives = 142/339 (41%), Gaps = 38/339 (11%)

Query: 381 LAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLF 439
           L EA L    +   P  ++A + AC      E+A+ + +KMR+   +PD   Y  +    
Sbjct: 171 LYEAFLLSQRQVLTPLTYNALIGACARNGDVEKALNLMSKMRRDGYQPDFVNYSSIIQYL 230

Query: 440 ---GNVNAPYEEGNMFSQVDSAKRINAIEMD-------------------------MARN 471
                +++P  +  +++++++ K    IE+D                         MA++
Sbjct: 231 TRSNKIDSPILQ-KLYTEIETDK----IEIDGHLMNDIILGFSKAGDPTRAMRFLAMAQS 285

Query: 472 N-IQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHR 527
           N +     ++  ++ ALG  G   E   L +   ++ +   T  YN +L   V+      
Sbjct: 286 NGLNPKPSTLVAVILALGNSGRTHEAEALFEEIRENGSEPRTRAYNALLKGYVKTGSLKD 345

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A  +  +M+  G+ P+  TY+++ID  +    ++SA  ++  M      P +  Y+ ++ 
Sbjct: 346 AEFVVSEMEKAGVKPDEQTYSLLIDAYAHAGRWESARIVLKEMEASNVEPNSYVYSRILA 405

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
              D G++ ++  +L  +   G+  D   YN ++    +   +D      E+M    ++P
Sbjct: 406 SYRDKGEWQKSFQVLKDMKSNGVQPDRHFYNVMIDTFGKYNCLDHAMATFERMLSEGIRP 465

Query: 648 DPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           D  T + + + +   G HN A E    +  R     ++T
Sbjct: 466 DTVTWNTLINCHCKSGRHNMAEELFGEMQQRGYSPCITT 504


>gi|302775073|ref|XP_002970953.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
 gi|300161664|gb|EFJ28279.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
          Length = 577

 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 112/553 (20%), Positives = 204/553 (36%), Gaps = 54/553 (9%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y  ++  LCK G LEEA +L+  + +  G  P +  Y S +    K      A      M
Sbjct: 24  YNALLNGLCKMGRLEEAIDLLRKIVDN-GCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEM 82

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSL-SIFSLRKFVWSFTRLRDL 243
             R +  + V YT L++  +    +     +++    H  +  + +L   +   ++   +
Sbjct: 83  ALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRI 142

Query: 244 KSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHAC 303
            +A    + M A  +     +                               +S +IH  
Sbjct: 143 GAAVRIFKSMEARGLAPNEVV-------------------------------YSALIHGL 171

Query: 304 GRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQD 363
            + +    A +++ QM+     P + TY+  I  +     +         M +   KP  
Sbjct: 172 CKARKMDCALEMLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDV 231

Query: 364 STIATLSVECSKALELDLAEALLDQ---ISRCT-NPKPFSAFLAACDTMDKPERAIKIFA 419
            T   L     KA   D A   L Q   I+ CT +   ++A +       K E A+ +  
Sbjct: 232 YTYNILISGFCKAGNTDAASHSLAQETTINGCTIDIHTYTAIVDWLAKNKKIEEAVALME 291

Query: 420 KMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHI 478
           K+      P I TY  L       N   + G +   +D  ++I         N      +
Sbjct: 292 KITANGCTPTIATYNALL------NGLCKMGRLEEAIDLLRKI-------VDNGCTPDVV 338

Query: 479 SMKNLLKALGAEGMIRELIQYFCD---SKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQM 535
           +  +L+  LG E    E  + F +       L T  Y  ++  L++  +  +A  ++K M
Sbjct: 339 TYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTM 398

Query: 536 KTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDF 595
            + G  P+  T + MID  S      +A  +   M   G  P  + Y+ALI  L      
Sbjct: 399 TSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKM 458

Query: 596 DEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFV 655
           D AL +L  +       D + YN ++   C+ G ++      ++M +   +PD  T + +
Sbjct: 459 DCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNIL 518

Query: 656 FSGYVNCGFHNSA 668
            SG+   G  ++A
Sbjct: 519 ISGFCKAGNTDAA 531



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/267 (22%), Positives = 108/267 (40%), Gaps = 17/267 (6%)

Query: 410 KPERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
           K E A+ +  K+      P I TY  L       N   + G +   +D  ++I       
Sbjct: 1   KIEEAVALMEKITANGCTPTIATYNALL------NGLCKMGRLEEAIDLLRKI------- 47

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRELIQYFCD---SKTPLGTPTYNTVLHSLVEAQES 525
             N      ++  +L+  LG E    E  + F +       L T  Y  ++  L++  + 
Sbjct: 48  VDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKI 107

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
            +A  ++K M + G  P+  T + MID  S      +A  +   M   G  P  + Y+AL
Sbjct: 108 PQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSAL 167

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           I  L      D AL +L  +       D + YN ++   C+ G ++      ++M +   
Sbjct: 168 IHGLCKARKMDCALEMLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGC 227

Query: 646 QPDPSTCHFVFSGYVNCGFHNSAMEAL 672
           +PD  T + + SG+   G  ++A  +L
Sbjct: 228 KPDVYTYNILISGFCKAGNTDAASHSL 254



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 71/156 (45%), Gaps = 2/156 (1%)

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMID-CCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
             A+ + +++   G  P  ATYN +++  C + R  + A  L+  +V +G  P  +TYT+
Sbjct: 3   EEAVALMEKITANGCTPTIATYNALLNGLCKMGR-LEEAIDLLRKIVDNGCTPDVVTYTS 61

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
           LI  L       EA  L   ++L G+  D + Y  ++++  + G+I     + + M  + 
Sbjct: 62  LIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHG 121

Query: 645 VQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRML 680
             PD  T   +  G    G   +A+   + +  R L
Sbjct: 122 CVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGL 157


>gi|125537003|gb|EAY83491.1| hypothetical protein OsI_38705 [Oryza sativa Indica Group]
          Length = 696

 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 107/442 (24%), Positives = 191/442 (43%), Gaps = 54/442 (12%)

Query: 233 FVWSFTRLRDLKSAYETLQHMVALAMMGKLYI-NRTSEGRLRSSRLDIP-IPLNALPV-- 288
            V S+ RL   + A+E    M  L +     + N      +R+  +D   +    +P   
Sbjct: 159 LVESWGRLGLARYAHEVFVQMPRLGLRPSTAVYNALIAASVRAGAVDTAYLRFQQMPADG 218

Query: 289 MKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTY----DGFIRAIVSDRGL 344
            +  R++++ ++H   R      A +L+ QM+  G++P+  TY    DGF  A   +   
Sbjct: 219 CRPDRFTYNSLVHGVCRRGIVDEAVRLVRQMEGEGIRPNVFTYTMLVDGFCNAGRVEEAF 278

Query: 345 RNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALL-DQISRCTNPKPFSAFLA 403
           R    +L  M++  + P ++T  TL     + LE D A  +L D +   T+  P     +
Sbjct: 279 R----MLDKMKEKGVAPSEATYRTLVHGVFRCLERDKAYRMLSDWLGHETSLHP-----S 329

Query: 404 ACDTM-------DKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNA----PYEEGNMF 452
           AC TM       D  + A++ FAK     R   R Y L  + FG V +      E  ++ 
Sbjct: 330 ACHTMLYCLSKKDMAKEAVE-FAK-----RMSARGYLLDSTAFGIVMSCSLKCLEVSDLC 383

Query: 453 SQVDSAKRINAIEMDMARNNIQHSHISMKNLLKA---LG---AEGMIRELIQYFCDSKTP 506
             +DS  +            +  S ++ KN  KA   LG    +G++  ++         
Sbjct: 384 ELLDSFIKNGGNPGFDVYIMVIKSLLNCKNFSKANHYLGHMVLKGLLSSVM--------- 434

Query: 507 LGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASAL 566
               +YN V+   V+A    +A EI K+M+  G  PN  T+N +I   S +    +A  +
Sbjct: 435 ----SYNMVIDCFVKAGAVDKAEEIVKEMQDKGFLPNLVTFNTLISGYSKLGNVHNAKVV 490

Query: 567 VSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE 626
           + M++  GF P  +T+T+LI  L +    D+A    + ++  G+  +   YN ++   C 
Sbjct: 491 LKMLMEHGFMPDIITFTSLIDGLCNTHQLDDAFVCFEEMAEWGVRPNAQTYNVLMHTLCS 550

Query: 627 KGRIDVIEFIIEQMHQNKVQPD 648
            G ++    ++ +M  + V PD
Sbjct: 551 AGHVNKAIDLLNKMKIDGVTPD 572



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 80/379 (21%), Positives = 155/379 (40%), Gaps = 45/379 (11%)

Query: 299 VIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNN 358
           ++ + GR   +  A ++ +QM  LGL+PS+  Y+  I A V    +       + M  + 
Sbjct: 159 LVESWGRLGLARYAHEVFVQMPRLGLRPSTAVYNALIAASVRAGAVDTAYLRFQQMPADG 218

Query: 359 LKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIF 418
            +P   T  +L     +   +D A  L+ Q+                             
Sbjct: 219 CRPDRFTYNSLVHGVCRRGIVDEAVRLVRQME---------------------------- 250

Query: 419 AKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHI 478
               + +RP++ TY +L   F N     E    F  +D  K       +     + H   
Sbjct: 251 ---GEGIRPNVFTYTMLVDGFCNAGRVEEA---FRMLDKMKEKGVAPSEATYRTLVH--- 301

Query: 479 SMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTC 538
               + + L  +   R L  +    +T L     +T+L+ L +   +  A+E  K+M   
Sbjct: 302 ---GVFRCLERDKAYRMLSDWL-GHETSLHPSACHTMLYCLSKKDMAKEAVEFAKRMSAR 357

Query: 539 GIPPNAATYNIMIDCCSIIRCFKSAS--ALVSMMVRDGFYPQTMTYTALIKILLDYGDFD 596
           G   ++  + I++ C   ++C + +    L+   +++G  P    Y  +IK LL+  +F 
Sbjct: 358 GYLLDSTAFGIVMSCS--LKCLEVSDLCELLDSFIKNGGNPGFDVYIMVIKSLLNCKNFS 415

Query: 597 EALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVF 656
           +A + L  + L+G+   V+ YN ++    + G +D  E I+++M      P+  T + + 
Sbjct: 416 KANHYLGHMVLKGLLSSVMSYNMVIDCFVKAGAVDKAEEIVKEMQDKGFLPNLVTFNTLI 475

Query: 657 SGYVNCGFHNSAMEALQVL 675
           SGY   G  ++A   L++L
Sbjct: 476 SGYSKLGNVHNAKVVLKML 494



 Score = 53.1 bits (126), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 104/496 (20%), Positives = 176/496 (35%), Gaps = 70/496 (14%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y  ++  +C+ G ++EA  L+  + E  GI P +  Y   +        +  A   LD M
Sbjct: 226 YNSLVHGVCRRGIVDEAVRLVRQM-EGEGIRPNVFTYTMLVDGFCNAGRVEEAFRMLDKM 284

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH-YSLSIFSLRKFVWSFTRLRDL 243
             + V  +E TY  L+            + +  D++ H  SL   +    ++  ++    
Sbjct: 285 KEKGVAPSEATYRTLVHGVFRCLERDKAYRMLSDWLGHETSLHPSACHTMLYCLSKKDMA 344

Query: 244 KSAYETLQHMVALAMMGKLYINRTSEGRLRSSRL------------DIPIPLNALPVMKV 291
           K A E  + M A   +    ++ T+ G + S  L            D  I     P   V
Sbjct: 345 KEAVEFAKRMSARGYL----LDSTAFGIVMSCSLKCLEVSDLCELLDSFIKNGGNPGFDV 400

Query: 292 LRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVL 351
               +  VI +    +N   A   +  M   GL  S  +Y+  I   V    +    E++
Sbjct: 401 ----YIMVIKSLLNCKNFSKANHYLGHMVLKGLLSSVMSYNMVIDCFVKAGAVDKAEEIV 456

Query: 352 KIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKP 411
           K MQ     P   T  TL    SK   +  A+ +L  +                      
Sbjct: 457 KEMQDKGFLPNLVTFNTLISGYSKLGNVHNAKVVLKML---------------------- 494

Query: 412 ERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471
                    M     PDI T+  L     N +          Q+D A      E +MA  
Sbjct: 495 ---------MEHGFMPDIITFTSLIDGLCNTH----------QLDDA--FVCFE-EMAEW 532

Query: 472 NIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRA 528
            ++ +  +   L+  L + G + + I      K    TP   ++N ++ S    ++  +A
Sbjct: 533 GVRPNAQTYNVLMHTLCSAGHVNKAIDLLNKMKIDGVTPDAYSFNALILSFCRMRKVDKA 592

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGF-YPQTMTYTALIK 587
            +IF  M   G+ P++ TYN +I      R    A  ++    R G       +Y  ++ 
Sbjct: 593 EDIFNDMVRFGVVPDSYTYNSLIKALCDERRVNKAKEILFARERSGCSTSNNQSYWPIVA 652

Query: 588 ILLDYGDFDEALNLLD 603
            L   G F EA  L+D
Sbjct: 653 ALAKMGQFSEAGELMD 668



 Score = 50.1 bits (118), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 29/133 (21%), Positives = 55/133 (41%)

Query: 531 IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590
           +  +++ CG   +      +++    +   + A  +   M R G  P T  Y ALI   +
Sbjct: 140 LVAEVRGCGCEVSEELVCALVESWGRLGLARYAHEVFVQMPRLGLRPSTAVYNALIAASV 199

Query: 591 DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650
             G  D A      +  +G   D   YN+++   C +G +D    ++ QM    ++P+  
Sbjct: 200 RAGAVDTAYLRFQQMPADGCRPDRFTYNSLVHGVCRRGIVDEAVRLVRQMEGEGIRPNVF 259

Query: 651 TCHFVFSGYVNCG 663
           T   +  G+ N G
Sbjct: 260 TYTMLVDGFCNAG 272


>gi|297830438|ref|XP_002883101.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328941|gb|EFH59360.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 689

 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 114/534 (21%), Positives = 216/534 (40%), Gaps = 52/534 (9%)

Query: 147 FLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQ 206
            +G +    P L  YN  +     ++ ++ A+  +  M +R    N VT+T L+      
Sbjct: 151 LIGFKKEFVPSLTNYNRLINQLCLIYRVIDAHKLVFDMRNRGHLPNVVTFTTLIGGYCEI 210

Query: 207 KNLSAVHEIWEDY----IKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHM--------- 253
           + L   H+++++     I+  SL++  L   +  F ++RD+++  + ++ +         
Sbjct: 211 RELEVAHKVFDEMRGCGIRPNSLTMSVL---IGGFFKMRDVETGRKLMKELWEYMKDEAD 267

Query: 254 --VALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVL--RWSFSDVIHACGRTQNS 309
             +  A    L  +   EG       DI      +P  + +   +S+  +I +  R + +
Sbjct: 268 TSMKTAAFANLVDSMCREGYFN----DIFEIAENMPQCESVNVEFSYGHMIDSLCRYRRN 323

Query: 310 GLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL 369
             A +++  M+S GL+P   +Y+  I  +  D G     ++L+   +    P + T   L
Sbjct: 324 HGAARIVYIMKSKGLKPRRTSYNAIIHGLCKDGGCMRAYQLLEEGSEFGFFPSEYTYKLL 383

Query: 370 SVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KL 425
                + L+      +L+ + R       + ++ +L A   MD P   + +   M Q   
Sbjct: 384 VESLCRELDTGKTRNVLELMLRKEGTDRTRIYNIYLRALCVMDNPTEILNVLVSMLQGDC 443

Query: 426 RPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMD---MARNNIQHSHISMKN 482
            PD  T   + + F  +           +VD A ++    M     A + +  + + M  
Sbjct: 444 SPDEYTLNTVVNGFCKM----------GRVDDAMKVLGDMMTGKFCAPDAVTLTTV-MCG 492

Query: 483 LLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPP 542
           LL    AE  +  L +   + K   G  TYN V+  L +  +   AM +F Q++   +  
Sbjct: 493 LLSQGRAEEALDVLNRVMPEKKIKPGVVTYNAVIRGLFKLNKGDEAMCVFDQLEKASVTA 552

Query: 543 NAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYP----QTMTYTALIKILLDYGDFDEA 598
           ++ TY I+ID      C  S   +      D  +P        Y A +K L   G   +A
Sbjct: 553 DSTTYAIIIDGL----CVTSQVDMAKKFWDDVIWPSGRHDVFVYAAFLKGLCRSGYLSDA 608

Query: 599 LNLL-DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
            + L DL     IP+ V+ YNT++ +    G       I+E+M +N   PD  T
Sbjct: 609 CHFLYDLADSGAIPN-VVCYNTVIDECSRSGLKREAYQILEEMRKNGQAPDAVT 661



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 69/295 (23%), Positives = 121/295 (41%), Gaps = 18/295 (6%)

Query: 394 NPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMF 452
           N   F+  +     + + E A K+F +MR   +RP+  T  +L   F  +    E G   
Sbjct: 196 NVVTFTTLIGGYCEIRELEVAHKVFDEMRGCGIRPNSLTMSVLIGGFFKMR-DVETGRKL 254

Query: 453 SQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYF-----CDSKTPL 507
                 K +     D A  +++ +  +  NL+ ++  EG   ++ +       C+S    
Sbjct: 255 -----MKELWEYMKDEADTSMKTA--AFANLVDSMCREGYFNDIFEIAENMPQCESVNV- 306

Query: 508 GTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI-DCCSIIRCFKSASAL 566
              +Y  ++ SL   + +H A  I   MK+ G+ P   +YN +I   C    C + A  L
Sbjct: 307 -EFSYGHMIDSLCRYRRNHGAARIVYIMKSKGLKPRRTSYNAIIHGLCKDGGCMR-AYQL 364

Query: 567 VSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE 626
           +      GF+P   TY  L++ L    D  +  N+L+L+  +       +YN  L+  C 
Sbjct: 365 LEEGSEFGFFPSEYTYKLLVESLCRELDTGKTRNVLELMLRKEGTDRTRIYNIYLRALCV 424

Query: 627 KGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLC 681
                 I  ++  M Q    PD  T + V +G+   G  + AM+ L  +     C
Sbjct: 425 MDNPTEILNVLVSMLQGDCSPDEYTLNTVVNGFCKMGRVDDAMKVLGDMMTGKFC 479



 Score = 46.6 bits (109), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 124/649 (19%), Positives = 232/649 (35%), Gaps = 115/649 (17%)

Query: 27  RRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALC-RGERSRASHLLLNLGHAHHSL 85
           RR+V N+    R + +   +     +    ++++D LC RG R  +    LNL    HSL
Sbjct: 48  RRSVTNRAYWRRRIHSICAVRR---NPDEALRVLDGLCLRGYRPDS----LNLSSVIHSL 100

Query: 86  ---GADDFFH--ILNYCA--------------------RSPDPLFVMETWRMMEEKEIGL 120
              G  D  H   L + A                    RSP   F +    +  +KE   
Sbjct: 101 CDAGRFDEAHRRFLLFVASGFIPDERTCNVIIARLLDLRSPVSTFGVIQRLIGFKKEFVP 160

Query: 121 NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLC 180
           +   Y  ++  LC    + +A  L++ +  R G  P +  + + +G   ++  +  A+  
Sbjct: 161 SLTNYNRLINQLCLIYRVIDAHKLVFDMRNR-GHLPNVVTFTTLIGGYCEIRELEVAHKV 219

Query: 181 LDLMDSRMVGKNEVTYTELL----KLAVWQKNLSAVHEIWEDYIKH---YSLSIFSLRKF 233
            D M    +  N +T + L+    K+   +     + E+WE Y+K     S+   +    
Sbjct: 220 FDEMRGCGIRPNSLTMSVLIGGFFKMRDVETGRKLMKELWE-YMKDEADTSMKTAAFANL 278

Query: 234 VWSFTRLRDLKSAYETLQHMVALA----------MMGKLYINRTSEGRLRSSRLDIPIPL 283
           V S  R       +E  ++M              M+  L   R + G  R       + +
Sbjct: 279 VDSMCREGYFNDIFEIAENMPQCESVNVEFSYGHMIDSLCRYRRNHGAARI------VYI 332

Query: 284 NALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIV---- 339
                +K  R S++ +IH   +      A QL+ +    G  PS +TY   + ++     
Sbjct: 333 MKSKGLKPRRTSYNAIIHGLCKDGGCMRAYQLLEEGSEFGFFPSEYTYKLLVESLCRELD 392

Query: 340 ----------------SDRG------------LRNGMEVLKI---MQQNNLKPQDSTIAT 368
                           +DR             + N  E+L +   M Q +  P + T+ T
Sbjct: 393 TGKTRNVLELMLRKEGTDRTRIYNIYLRALCVMDNPTEILNVLVSMLQGDCSPDEYTLNT 452

Query: 369 LSVECSKALELDLAEALLDQI--SRCTNPKPFSAFLAACD--TMDKPERAIKIFAKM--R 422
           +     K   +D A  +L  +   +   P   +     C   +  + E A+ +  ++   
Sbjct: 453 VVNGFCKMGRVDDAMKVLGDMMTGKFCAPDAVTLTTVMCGLLSQGRAEEALDVLNRVMPE 512

Query: 423 QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKN 482
           +K++P + TY  +      +N   E   +F Q++ A             ++     +   
Sbjct: 513 KKIKPGVVTYNAVIRGLFKLNKGDEAMCVFDQLEKA-------------SVTADSTTYAI 559

Query: 483 LLKALGAEGMIRELIQYFCDSKTPLG---TPTYNTVLHSLVEAQESHRAMEIFKQMKTCG 539
           ++  L     +    +++ D   P G      Y   L  L  +     A      +   G
Sbjct: 560 IIDGLCVTSQVDMAKKFWDDVIWPSGRHDVFVYAAFLKGLCRSGYLSDACHFLYDLADSG 619

Query: 540 IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
             PN   YN +ID CS     + A  ++  M ++G  P  +T+  L K+
Sbjct: 620 AIPNVVCYNTVIDECSRSGLKREAYQILEEMRKNGQAPDAVTWRILDKL 668


>gi|224092696|ref|XP_002309701.1| predicted protein [Populus trichocarpa]
 gi|222855677|gb|EEE93224.1| predicted protein [Populus trichocarpa]
          Length = 597

 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 104/479 (21%), Positives = 195/479 (40%), Gaps = 41/479 (8%)

Query: 205 WQKNLSAVHEIWEDYIKHYSLS-----------IFSLRKFVWSFTRLRDLKSAYETLQHM 253
           + K LSA+ ++ + Y    SLS           I++L  F+  F +L+ +   +  L  +
Sbjct: 95  FAKLLSAIVKMGQYYDVVISLSKQMELVGLSPNIYTLSIFMNCFCQLQRVDLGFSVLAKV 154

Query: 254 VALAMMGKLYINRT-SEGRLRSSRLDIPIPLNALPVMKVLR---WSFSDVIHACGRTQNS 309
           + L +   +    T   G  +       + L    V K  +   ++++ +I+   +   +
Sbjct: 155 IKLGLQPTIVTFTTLINGLCKVGEFAQAVELFDDMVAKGCQPDVYTYNTIINGLCKIGET 214

Query: 310 GLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL 369
             A  L+ +M+  G QP+  TY   I ++  DR +   +++   M+   + P   T  +L
Sbjct: 215 AAAAGLLKKMEEAGCQPNMVTYSTLIDSLCRDRLVNEALDIFSYMKAKGISPDIFTYTSL 274

Query: 370 SVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTM---DKPERAIKIFAKMRQ-KL 425
                K      A ALL++++          F    DT     K   A+ +   M +  +
Sbjct: 275 IQGLCKFSRWKEASALLNEMTSLNIMPDIVTFNVLVDTFCKEGKVSEALGVLKTMTEMGV 334

Query: 426 RPDIRTYELL---FSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKN 482
            P++ TY  L   +SL+ +V            V++ K  + +     + NI   +I +  
Sbjct: 335 EPNVVTYSSLMYGYSLWTDV------------VEARKLFHVMITKGCKPNIFSYNILING 382

Query: 483 LLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCG 539
             KA      I E +Q F +      TP   +YNT++H   +  +   A ++F+ M T G
Sbjct: 383 YCKA----KRIDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLGKLREAQDLFRNMCTNG 438

Query: 540 IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEAL 599
             P+  TY+I++D          A  L   M      P  + YT L+  +   G+  +A 
Sbjct: 439 NLPDLFTYSILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYTILVHAMCKSGNHKDAR 498

Query: 600 NLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
            L   + ++G+   V LY TI+   C++G +D        M  +   PD  + + +  G
Sbjct: 499 KLFSELFVQGLQPHVQLYTTIINGLCKEGLLDEALEAFRNMEADGCPPDEISYNVIIRG 557



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 100/213 (46%), Gaps = 3/213 (1%)

Query: 450 NMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGT 509
           N F Q+       ++   + +  +Q + ++   L+  L   G   + ++ F D       
Sbjct: 136 NCFCQLQRVDLGFSVLAKVIKLGLQPTIVTFTTLINGLCKVGEFAQAVELFDDMVAKGCQ 195

Query: 510 P---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASAL 566
           P   TYNT+++ L +  E+  A  + K+M+  G  PN  TY+ +ID     R    A  +
Sbjct: 196 PDVYTYNTIINGLCKIGETAAAAGLLKKMEEAGCQPNMVTYSTLIDSLCRDRLVNEALDI 255

Query: 567 VSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE 626
            S M   G  P   TYT+LI+ L  +  + EA  LL+ ++   I  D++ +N ++   C+
Sbjct: 256 FSYMKAKGISPDIFTYTSLIQGLCKFSRWKEASALLNEMTSLNIMPDIVTFNVLVDTFCK 315

Query: 627 KGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
           +G++     +++ M +  V+P+  T   +  GY
Sbjct: 316 EGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGY 348



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 80/166 (48%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           T+ T+++ L +  E  +A+E+F  M   G  P+  TYN +I+    I    +A+ L+  M
Sbjct: 165 TFTTLINGLCKVGEFAQAVELFDDMVAKGCQPDVYTYNTIINGLCKIGETAAAAGLLKKM 224

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
              G  P  +TY+ LI  L      +EAL++   +  +GI  D+  Y ++++  C+  R 
Sbjct: 225 EEAGCQPNMVTYSTLIDSLCRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQGLCKFSRW 284

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
                ++ +M    + PD  T + +   +   G  + A+  L+ ++
Sbjct: 285 KEASALLNEMTSLNIMPDIVTFNVLVDTFCKEGKVSEALGVLKTMT 330



 Score = 52.8 bits (125), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 85/435 (19%), Positives = 176/435 (40%), Gaps = 42/435 (9%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           +  ++  LCK G   +A  L   +  + G  P +  YN+ +    K+     A   L  M
Sbjct: 166 FTTLINGLCKVGEFAQAVELFDDMVAK-GCQPDVYTYNTIINGLCKIGETAAAAGLLKKM 224

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLS--IFSLRKFVWSFTRLRD 242
           +      N VTY+ L+      + ++   +I+  Y+K   +S  IF+    +    +   
Sbjct: 225 EEAGCQPNMVTYSTLIDSLCRDRLVNEALDIFS-YMKAKGISPDIFTYTSLIQGLCKFSR 283

Query: 243 LKSAYETLQHMVALAMMGKLY-INRTSEGRLRSSRLDIPIPLNALPVMKVLR-------- 293
            K A   L  M +L +M  +   N   +   +  ++       AL V+K +         
Sbjct: 284 WKEASALLNEMTSLNIMPDIVTFNVLVDTFCKEGKVS-----EALGVLKTMTEMGVEPNV 338

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
            ++S +++      +   A +L   M + G +P+  +Y+  I      + +   M++   
Sbjct: 339 VTYSSLMYGYSLWTDVVEARKLFHVMITKGCKPNIFSYNILINGYCKAKRIDEAMQLFNE 398

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPK-----PFSAFLAACDTM 408
           M    L P + +  TL     +  +L  A+ L   +  CTN        +S  L      
Sbjct: 399 MIHQGLTPNNVSYNTLIHGFCQLGKLREAQDLFRNM--CTNGNLPDLFTYSILLDGFCKQ 456

Query: 409 DKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMD 467
               +A ++F  M+   L+P++  Y +L      V+A  + GN     D+ K  + + + 
Sbjct: 457 GYLGKAFRLFRAMQSTYLKPNLVMYTIL------VHAMCKSGN---HKDARKLFSELFVQ 507

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQE 524
             + ++Q        ++  L  EG++ E ++ F + +     P   +YN ++  L++ ++
Sbjct: 508 GLQPHVQL----YTTIINGLCKEGLLDEALEAFRNMEADGCPPDEISYNVIIRGLLQHKD 563

Query: 525 SHRAMEIFKQMKTCG 539
             RA+ +  +M+  G
Sbjct: 564 ESRALLLVGEMRDRG 578


>gi|224093190|ref|XP_002309826.1| predicted protein [Populus trichocarpa]
 gi|222852729|gb|EEE90276.1| predicted protein [Populus trichocarpa]
          Length = 1480

 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 82/341 (24%), Positives = 154/341 (45%), Gaps = 35/341 (10%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSS----HTYDGFIRAIVSDRGLRNGM-EV 350
            S ++   G+     LA ++ ++ +     PS+      Y+  +  + + RG  N + E+
Sbjct: 223 LSTILSVLGKANQEALAVEVFMRAE-----PSAGNTVQVYNAMM-GVYARRGRFNKVQEL 276

Query: 351 LKIMQQNNLKPQDSTIATLSVECSKALEL--DLAEALLDQISRCTNPKP----FSAFLAA 404
           L +M++   KP   +  TL     KA  +  +LA  LL+++ R +  +P    ++  ++A
Sbjct: 277 LDLMRERGCKPDLVSFNTLINARLKAGAMMPNLAIELLNEVRR-SGLRPDTITYNTLISA 335

Query: 405 CDTMDKPERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINA 463
           C      E A K+F  M     +PD+ TY  + S++G      +   +F+ ++S      
Sbjct: 336 CSRASNLEEAAKVFDDMEAHHCQPDLWTYNAMISVYGRCGLSGKAEQLFNDLES------ 389

Query: 464 IEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCD-SKTPLGTP--TYNTVLHSLV 520
                         +S  +LL A   EG + ++ + + +  K   G    TYNT++H   
Sbjct: 390 -------RGFFPDAVSYNSLLYAFAREGNVEKVKEIWEEMVKIGFGKDEMTYNTMIHMYG 442

Query: 521 EAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTM 580
           +  ++  A+++++ M++ G  P+A TY ++ID          A+ ++S M+  G  P   
Sbjct: 443 KQGQNELALQLYRDMQSSGRNPDAVTYTVLIDSLGKTNKIAEAAGVMSEMLNTGVKPTLK 502

Query: 581 TYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTIL 621
           TY+ALI      G   EA    D +   GI  D L Y+ +L
Sbjct: 503 TYSALICGYAKAGKPVEAEETFDCMLRSGIRPDHLAYSVML 543



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 133/645 (20%), Positives = 252/645 (39%), Gaps = 74/645 (11%)

Query: 76  LNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKG 135
           LNL H  +S  A     IL+   ++      +E + M  E   G   + Y  MM    + 
Sbjct: 210 LNLRH-WYSPNARMLSTILSVLGKANQEALAVEVF-MRAEPSAGNTVQVYNAMMGVYARR 267

Query: 136 GYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDS-RMVG--KN 192
           G   +   L+  + ER G  P L  +N+ + A  K  +M+  NL ++L++  R  G   +
Sbjct: 268 GRFNKVQELLDLMRER-GCKPDLVSFNTLINARLKAGAMM-PNLAIELLNEVRRSGLRPD 325

Query: 193 EVTYTELLKLAVWQKNLSAVHEIWEDYIKHY-SLSIFSLRKFVWSFTR----------LR 241
            +TY  L+       NL    ++++D   H+    +++    +  + R            
Sbjct: 326 TITYNTLISACSRASNLEEAAKVFDDMEAHHCQPDLWTYNAMISVYGRCGLSGKAEQLFN 385

Query: 242 DLKS--------AYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLR 293
           DL+S        +Y +L  + A A  G   + +  E  +    + I    + +       
Sbjct: 386 DLESRGFFPDAVSYNSL--LYAFAREGN--VEKVKE--IWEEMVKIGFGKDEM------- 432

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
            +++ +IH  G+   + LA QL   MQS G  P + TY   I ++     +     V+  
Sbjct: 433 -TYNTMIHMYGKQGQNELALQLYRDMQSSGRNPDAVTYTVLIDSLGKTNKIAEAAGVMSE 491

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMD 409
           M    +KP   T + L    +KA +   AE   D + R +  +P    +S  L      +
Sbjct: 492 MLNTGVKPTLKTYSALICGYAKAGKPVEAEETFDCMLR-SGIRPDHLAYSVMLDIHLRFN 550

Query: 410 KPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVD-----SAKRINA 463
           +P+RA+ ++ +M    +  D   YEL+      VN   + G +   ++     + + I++
Sbjct: 551 EPKRAMTLYKEMLHDGITLDHSLYELMLRTLRKVNKVEDIGRVIRDMEEICGMNTQTISS 610

Query: 464 I---------EMDMARNNI-QHSHISMKNLLKAL------GAEGMIRELIQYFCDSKTPL 507
           I            M R  I  H  I  +NLL  L      G      +L+++  +     
Sbjct: 611 ILVKGECYDEAAKMLRRAISDHFEIDRENLLSILSSYSSSGRHAEALDLLEFLKEHSPRS 670

Query: 508 GTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALV 567
                  ++  L +AQ+   A++ +   +  G   +   +  +I CC        AS + 
Sbjct: 671 SQMITEALVVMLCKAQQLDAALKEYSNNRELGFTGSFTMFESLIQCCLENELITEASQVF 730

Query: 568 SMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGI-PHDVLLYNTILKKACE 626
           S M   G       Y +++ +    G  + A +L+D    +GI  +++ LY  +++    
Sbjct: 731 SDMRFCGIKASESLYESMVLLYCKMGFPETAHHLIDFAESDGILLNNISLYVNVIEAY-- 788

Query: 627 KGRIDV---IEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSA 668
            GR+ +    E +   + Q  +  D    + +   Y   G +  A
Sbjct: 789 -GRLKLWQKAESVAGNLRQRCITVDRKVWNALIEAYAASGCYERA 832



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 75/170 (44%), Gaps = 7/170 (4%)

Query: 509 TPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASA--L 566
           T TYNT++ +   A     A ++F  M+     P+  TYN MI      RC  S  A  L
Sbjct: 326 TITYNTLISACSRASNLEEAAKVFDDMEAHHCQPDLWTYNAMISVYG--RCGLSGKAEQL 383

Query: 567 VSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE 626
            + +   GF+P  ++Y +L+      G+ ++   + + +   G   D + YNT++    +
Sbjct: 384 FNDLESRGFFPDAVSYNSLLYAFAREGNVEKVKEIWEEMVKIGFGKDEMTYNTMIHMYGK 443

Query: 627 KGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
           +G+ ++   +   M  +   PD  T   +     + G  N   EA  V+S
Sbjct: 444 QGQNELALQLYRDMQSSGRNPDAVTYTVLID---SLGKTNKIAEAAGVMS 490



 Score = 52.8 bits (125), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 73/172 (42%), Gaps = 11/172 (6%)

Query: 513 NTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAA----TYNIMIDCCSIIRCFKSASALVS 568
           +T+L  L +A +   A+E+F + +     P+A      YN M+   +    F     L+ 
Sbjct: 224 STILSVLGKANQEALAVEVFMRAE-----PSAGNTVQVYNAMMGVYARRGRFNKVQELLD 278

Query: 569 MMVRDGFYPQTMTYTALIKILLDYGDF--DEALNLLDLVSLEGIPHDVLLYNTILKKACE 626
           +M   G  P  +++  LI   L  G    + A+ LL+ V   G+  D + YNT++     
Sbjct: 279 LMRERGCKPDLVSFNTLINARLKAGAMMPNLAIELLNEVRRSGLRPDTITYNTLISACSR 338

Query: 627 KGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678
              ++    + + M  +  QPD  T + + S Y  CG    A +    L  R
Sbjct: 339 ASNLEEAAKVFDDMEAHHCQPDLWTYNAMISVYGRCGLSGKAEQLFNDLESR 390



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 76/166 (45%), Gaps = 5/166 (3%)

Query: 512  YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC-CSIIRCFKSASALVSMM 570
            +N+VL   V  ++  + +++++++K  G+ P+  TYN +I   C   R  +  S +  M 
Sbjct: 956  WNSVLKMYVAIEDFRKTIQVYQRIKEDGLEPDEDTYNTLIVMYCRDHRPEEGFSLMHEMR 1015

Query: 571  VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
            V  G  P+  TY +L+         ++A  L + +  +G   D   Y+T++K     G  
Sbjct: 1016 VA-GLEPKLDTYKSLVASFGKQQLVEQAEELFEELQSKGCKLDRSFYHTMMKIYRNSGSH 1074

Query: 631  DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
               E +   M    V+P  +T H +   Y + G      EA +VLS
Sbjct: 1075 SKAERLFSMMKDAGVEPTIATMHLLMVSYGSSG---QPQEAEKVLS 1117



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 85/457 (18%), Positives = 161/457 (35%), Gaps = 100/457 (21%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           W+++ +I   GR   SG AEQL   ++S G  P + +Y+  + A   +  +    E+ + 
Sbjct: 362 WTYNAMISVYGRCGLSGKAEQLFNDLESRGFFPDAVSYNSLLYAFAREGNVEKVKEIWEE 421

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALL-DQISRCTNPKP--FSAFLAACDTMDK 410
           M +      + T  T+     K  + +LA  L  D  S   NP    ++  + +    +K
Sbjct: 422 MVKIGFGKDEMTYNTMIHMYGKQGQNELALQLYRDMQSSGRNPDAVTYTVLIDSLGKTNK 481

Query: 411 PERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
              A  + ++M    ++P ++TY  L   +     P E    F               M 
Sbjct: 482 IAEAAGVMSEMLNTGVKPTLKTYSALICGYAKAGKPVEAEETFDC-------------ML 528

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAM 529
           R+ I+  H++                                Y+ +L   +   E  RAM
Sbjct: 529 RSGIRPDHLA--------------------------------YSVMLDIHLRFNEPKRAM 556

Query: 530 EIFKQMKTCGIPPNAATYNIMI----------DCCSIIR--------------------- 558
            ++K+M   GI  + + Y +M+          D   +IR                     
Sbjct: 557 TLYKEMLHDGITLDHSLYELMLRTLRKVNKVEDIGRVIRDMEEICGMNTQTISSILVKGE 616

Query: 559 CFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYN 618
           C+  A+ ++   + D F        +++      G   EAL+LL+ +         ++  
Sbjct: 617 CYDEAAKMLRRAISDHFEIDRENLLSILSSYSSSGRHAEALDLLEFLKEHSPRSSQMITE 676

Query: 619 TILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAM-EALQVLSM 677
            ++   C+  ++D       + + N  +   +    +F   + C   N  + EA QV S 
Sbjct: 677 ALVVMLCKAQQLDA----ALKEYSNNRELGFTGSFTMFESLIQCCLENELITEASQVFSD 732

Query: 678 RMLCEEVSTLEEKRSDFEDLILAEDSEAESRILQFCE 714
              C                I A +S  ES +L +C+
Sbjct: 733 MRFCG---------------IKASESLYESMVLLYCK 754



 Score = 48.9 bits (115), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 60/339 (17%), Positives = 137/339 (40%), Gaps = 49/339 (14%)

Query: 290  KVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGME 349
            K+ + S   ++ A  R  N    +++   M++ G  P+ H Y    R +   + +R+   
Sbjct: 880  KISKSSILLMLDAFARAGNIFEVKKIYHGMKAAGYFPTMHLYRVMARLLSRGKQVRDVEA 939

Query: 350  VLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMD 409
            +L  M++   KP       LS+                          +++ L     ++
Sbjct: 940  MLSEMEEAGFKPD------LSI--------------------------WNSVLKMYVAIE 967

Query: 410  KPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
               + I+++ ++++  L PD  TY  L  ++   + P E  ++  ++    R+  +E  +
Sbjct: 968  DFRKTIQVYQRIKEDGLEPDEDTYNTLIVMYCRDHRPEEGFSLMHEM----RVAGLEPKL 1023

Query: 469  ARNNIQHSHISMKNLLKALGAEGMI---RELIQYFCDSKTPLGTPTYNTVLHSLVEAQES 525
                      + K+L+ + G + ++    EL +        L    Y+T++     +   
Sbjct: 1024 D---------TYKSLVASFGKQQLVEQAEELFEELQSKGCKLDRSFYHTMMKIYRNSGSH 1074

Query: 526  HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
             +A  +F  MK  G+ P  AT ++++         + A  ++S +   G    T+ Y+++
Sbjct: 1075 SKAERLFSMMKDAGVEPTIATMHLLMVSYGSSGQPQEAEKVLSNLKETGSNLSTLPYSSV 1134

Query: 586  IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKA 624
            I   L  GD++  +  L  +  EG+  D  ++   ++ A
Sbjct: 1135 IDAYLRNGDYNIGIQKLIQMKKEGLEPDHRIWTCFIRAA 1173



 Score = 46.6 bits (109), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 37/189 (19%), Positives = 76/189 (40%), Gaps = 3/189 (1%)

Query: 483  LLKALGAEGMIRELIQYFCDSKTPLGTPT---YNTVLHSLVEAQESHRAMEIFKQMKTCG 539
            +L A    G I E+ + +   K     PT   Y  +   L   ++      +  +M+  G
Sbjct: 889  MLDAFARAGNIFEVKKIYHGMKAAGYFPTMHLYRVMARLLSRGKQVRDVEAMLSEMEEAG 948

Query: 540  IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEAL 599
              P+ + +N ++     I  F+    +   +  DG  P   TY  LI +       +E  
Sbjct: 949  FKPDLSIWNSVLKMYVAIEDFRKTIQVYQRIKEDGLEPDEDTYNTLIVMYCRDHRPEEGF 1008

Query: 600  NLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
            +L+  + + G+   +  Y +++    ++  ++  E + E++     + D S  H +   Y
Sbjct: 1009 SLMHEMRVAGLEPKLDTYKSLVASFGKQQLVEQAEELFEELQSKGCKLDRSFYHTMMKIY 1068

Query: 660  VNCGFHNSA 668
             N G H+ A
Sbjct: 1069 RNSGSHSKA 1077



 Score = 41.6 bits (96), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 55/239 (23%), Positives = 98/239 (41%), Gaps = 22/239 (9%)

Query: 511  TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
            TY +++ S  + Q   +A E+F+++++ G   + + Y+ M+           A  L SMM
Sbjct: 1025 TYKSLVASFGKQQLVEQAEELFEELQSKGCKLDRSFYHTMMKIYRNSGSHSKAERLFSMM 1084

Query: 571  VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
               G  P   T   L+      G   EA  +L  +   G     L Y++++      G  
Sbjct: 1085 KDAGVEPTIATMHLLMVSYGSSGQPQEAEKVLSNLKETGSNLSTLPYSSVIDAYLRNGDY 1144

Query: 631  DV-IEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG-FHNSAMEALQVLSMRMLCEEVSTLE 688
            ++ I+ +I QM +  ++PD    H +++ ++          EA+ +L         + L+
Sbjct: 1145 NIGIQKLI-QMKKEGLEPD----HRIWTCFIRAASLSRRTSEAIVLL---------NALQ 1190

Query: 689  EKRSDFEDLILAEDSE----AESRILQFCEDSNENLA--FTAALLQLRWCTIVGFPISW 741
            +   D    +L E  E    A  R L+  E   +N A  F  AL  L W   +    SW
Sbjct: 1191 DAGFDLPIRLLTEKPESLVSALDRCLEMLETLEDNAAFNFVNALEDLLWAFELRATASW 1249


>gi|224130398|ref|XP_002320827.1| predicted protein [Populus trichocarpa]
 gi|222861600|gb|EEE99142.1| predicted protein [Populus trichocarpa]
          Length = 775

 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 75/348 (21%), Positives = 147/348 (42%), Gaps = 24/348 (6%)

Query: 321 SLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ-QNNLKPQDSTIATLSVECSKALEL 379
           S+ ++P    Y+  I  +      + G+ +++ M+ Q    P   T   L     KA E+
Sbjct: 376 SVSVEPDVVIYNTLIDGLCKVGRQQEGLGLMERMRSQKGCAPDTITYNCLIDGFCKAGEI 435

Query: 380 DLAEALLDQISR---CTNPKPFSAFLAACDTMDKPERAIKIFAK-MRQKLRPDIRTYELL 435
           +  + L D++++     N    +  +       +   A+  F +  R+ ++ D  TY  L
Sbjct: 436 EKGKELFDEMNKEGVAPNVVTVNTLVGGMCRTGRVSSAVNFFVEAQRRGMKGDAVTYTAL 495

Query: 436 FSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRE 495
            + F NVN   +   +F++             M ++      I    L+      G + +
Sbjct: 496 INAFCNVNNFEKAMELFNE-------------MLKSGCSPDAIVYYTLISGFSQAGRMAD 542

Query: 496 LIQYFCDSKTPLG----TPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI 551
                 + K  LG    T  YNT++       + HR  E+ K+M+  G+ P+  TYN +I
Sbjct: 543 ASFVLAELK-KLGIRPDTVCYNTLIGGFCRTNKFHRVFEMLKEMEEAGLKPDTITYNTLI 601

Query: 552 DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL-DLVSLEGI 610
              S     K A  ++  M++ G  P   TY A+I      G+ +EA+ +  D+ +   +
Sbjct: 602 AYASKNGDLKFAQKVMRKMIKAGVVPTVATYGAVINAYCLNGNGNEAMEIFKDMKAASKV 661

Query: 611 PHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
           P + ++YN ++   C+  ++     ++E M    V P+ +T + +F G
Sbjct: 662 PPNTVIYNILINSLCKNNKVKSAVSLMEDMKIWGVTPNTTTYNAIFKG 709



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 74/382 (19%), Positives = 153/382 (40%), Gaps = 42/382 (10%)

Query: 297 SDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQ 356
           + ++    R  N     +LM +M  + +QP+  T+   I  +   R + + +EVL+ M  
Sbjct: 309 NSLLTGLAREGNFNRMNELMEKMVEMDIQPNVVTFGILINHMCKFRRVDDALEVLEKMSG 368

Query: 357 NNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIK 416
                ++S   ++SVE     ++ +   L+D + +                + + +  + 
Sbjct: 369 G----KESGGISVSVEP----DVVIYNTLIDGLCK----------------VGRQQEGLG 404

Query: 417 IFAKMRQK--LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQ 474
           +  +MR +    PD  TY  L   F       +   +F +             M +  + 
Sbjct: 405 LMERMRSQKGCAPDTITYNCLIDGFCKAGEIEKGKELFDE-------------MNKEGVA 451

Query: 475 HSHISMKNLLKALGAEGMIRELIQYFCDSK---TPLGTPTYNTVLHSLVEAQESHRAMEI 531
            + +++  L+  +   G +   + +F +++         TY  ++++        +AME+
Sbjct: 452 PNVVTVNTLVGGMCRTGRVSSAVNFFVEAQRRGMKGDAVTYTALINAFCNVNNFEKAMEL 511

Query: 532 FKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLD 591
           F +M   G  P+A  Y  +I   S       AS +++ + + G  P T+ Y  LI     
Sbjct: 512 FNEMLKSGCSPDAIVYYTLISGFSQAGRMADASFVLAELKKLGIRPDTVCYNTLIGGFCR 571

Query: 592 YGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
              F     +L  +   G+  D + YNT++  A + G +   + ++ +M +  V P  +T
Sbjct: 572 TNKFHRVFEMLKEMEEAGLKPDTITYNTLIAYASKNGDLKFAQKVMRKMIKAGVVPTVAT 631

Query: 652 CHFVFSGYVNCGFHNSAMEALQ 673
              V + Y   G  N AME  +
Sbjct: 632 YGAVINAYCLNGNGNEAMEIFK 653



 Score = 69.3 bits (168), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 75/337 (22%), Positives = 132/337 (39%), Gaps = 34/337 (10%)

Query: 298 DVIHACGRTQNS-GLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQ 356
           D +   GR Q   GL E++  Q    G  P + TY+  I        +  G E+   M +
Sbjct: 391 DGLCKVGRQQEGLGLMERMRSQK---GCAPDTITYNCLIDGFCKAGEIEKGKELFDEMNK 447

Query: 357 NNLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKPER 413
             + P   T+ TL     +   +  A     +  R     +   ++A + A   ++  E+
Sbjct: 448 EGVAPNVVTVNTLVGGMCRTGRVSSAVNFFVEAQRRGMKGDAVTYTALINAFCNVNNFEK 507

Query: 414 AIKIFAKM-RQKLRPDIRTYELLFSLFGNV----NAPYEEGNM----------------- 451
           A+++F +M +    PD   Y  L S F       +A +    +                 
Sbjct: 508 AMELFNEMLKSGCSPDAIVYYTLISGFSQAGRMADASFVLAELKKLGIRPDTVCYNTLIG 567

Query: 452 -FSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIR---ELIQYFCDSKTPL 507
            F + +   R+  +  +M    ++   I+   L+      G ++   ++++    +    
Sbjct: 568 GFCRTNKFHRVFEMLKEMEEAGLKPDTITYNTLIAYASKNGDLKFAQKVMRKMIKAGVVP 627

Query: 508 GTPTYNTVLHSLVEAQESHRAMEIFKQMKTCG-IPPNAATYNIMIDCCSIIRCFKSASAL 566
              TY  V+++       + AMEIFK MK    +PPN   YNI+I+        KSA +L
Sbjct: 628 TVATYGAVINAYCLNGNGNEAMEIFKDMKAASKVPPNTVIYNILINSLCKNNKVKSAVSL 687

Query: 567 VSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLD 603
           +  M   G  P T TY A+ K L D  D ++    +D
Sbjct: 688 MEDMKIWGVTPNTTTYNAIFKGLRDEKDLEKVFEFMD 724



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 63/301 (20%), Positives = 118/301 (39%), Gaps = 23/301 (7%)

Query: 305 RTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDS 364
           RT     A    ++ Q  G++  + TY   I A  +       ME+   M ++   P   
Sbjct: 466 RTGRVSSAVNFFVEAQRRGMKGDAVTYTALINAFCNVNNFEKAMELFNEMLKSGCSPDAI 525

Query: 365 TIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDKPERAIKIFAK 420
              TL    S+A  +  A  +L ++ +    +P    ++  +      +K  R  ++  +
Sbjct: 526 VYYTLISGFSQAGRMADASFVLAELKKL-GIRPDTVCYNTLIGGFCRTNKFHRVFEMLKE 584

Query: 421 MRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHIS 479
           M +  L+PD  TY  L + + + N   +    F+Q    K I A         +  +  +
Sbjct: 585 MEEAGLKPDTITYNTLIA-YASKNGDLK----FAQKVMRKMIKA--------GVVPTVAT 631

Query: 480 MKNLLKALGAEGMIRELIQYFCD----SKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQM 535
              ++ A    G   E ++ F D    SK P  T  YN +++SL +  +   A+ + + M
Sbjct: 632 YGAVINAYCLNGNGNEAMEIFKDMKAASKVPPNTVIYNILINSLCKNNKVKSAVSLMEDM 691

Query: 536 KTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDF 595
           K  G+ PN  TYN +       +  +     +  M+     P  +T   L + L   G+ 
Sbjct: 692 KIWGVTPNTTTYNAIFKGLRDEKDLEKVFEFMDRMIEHACNPDYITMEILTEWLSAVGEI 751

Query: 596 D 596
           +
Sbjct: 752 E 752


>gi|449523421|ref|XP_004168722.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 87/370 (23%), Positives = 157/370 (42%), Gaps = 53/370 (14%)

Query: 315 LMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECS 374
           L  +M  L ++ S +T++  I  +  +  L+   + +  M+ + +KP   T  T+     
Sbjct: 208 LYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYC 267

Query: 375 KALELDLAEALLDQISRCT-NPKPFS--AFLAACDTMDKPERAIKIFAKMRQK-LRPDIR 430
            +  ++ A+A+L  + R    P  F+  + ++      + E A KIF +M QK LRP   
Sbjct: 268 SSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAV 327

Query: 431 TYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAE 490
            Y  L   F N      +GN+    D A   +A + +M +  I  +              
Sbjct: 328 IYNTLIDGFCN------KGNL----DMA---SAYKDEMLKKGISPT-------------- 360

Query: 491 GMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIM 550
                               TYN+++H+L   Q +  A  + K+++  GI P+A TYNI+
Sbjct: 361 ------------------MSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNIL 402

Query: 551 IDCCSIIRCFKSASALV--SMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLE 608
           I+     RC  +  A +    M+  G  P   TYT+L+ +L       EA +L   ++ E
Sbjct: 403 IN--GYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSE 460

Query: 609 GIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSA 668
           G+  D +++N ++   C    +     +++ M + KV PD  T + +  G+   G    A
Sbjct: 461 GVLPDAIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEA 520

Query: 669 MEALQVLSMR 678
            E    +  R
Sbjct: 521 RELFDEMKRR 530



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 114/545 (20%), Positives = 218/545 (40%), Gaps = 61/545 (11%)

Query: 127 LMMQALCKGGYLEEASNLIYFLG---ERYGIYPILPVYNSFLGACAKLHSMVHANLCLDL 183
           L+ QAL  GG       +  FL    +R G    + V++  + +C  ++    A  C   
Sbjct: 119 LLRQAL-GGGTTNSIREIFEFLAASRDRLGFKSSI-VFDYLIKSCCDMNRADEAFECFYT 176

Query: 184 MDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDL 243
           M  + V     T   LL L +    L+     W  Y + +               RLR +
Sbjct: 177 MKEKGVLPTIETCNSLLSLFL---KLNRTEAAWVLYAEMF---------------RLR-I 217

Query: 244 KSAYETLQHMV-ALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHA 302
           KS+  T   M+  L   GKL   +   G + +S +   I             +++ ++H 
Sbjct: 218 KSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNI------------VTYNTIVHG 265

Query: 303 CGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQ 362
              +     A+ ++  M+   ++P S TY   I  +     L    ++ + M Q  L+P 
Sbjct: 266 YCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPS 325

Query: 363 DSTIATL-SVECSKALELDLAEALLDQ-ISRCTNP--KPFSAFLAACDTMDKPERAIKIF 418
                TL    C+K   LD+A A  D+ + +  +P    +++ + A     + + A  + 
Sbjct: 326 AVIYNTLIDGFCNKG-NLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMI 384

Query: 419 AKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSH 477
            ++++K + PD  TY +L              N + +  +AK+   +  +M  + I+ + 
Sbjct: 385 KEIQEKGISPDAITYNILI-------------NGYCRCANAKKAFLLHDEMLASGIKPTK 431

Query: 478 ISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHR----AMEIFK 533
            +  +LL  L  +  ++E    F    T  G      + ++L++   S+     A E+ K
Sbjct: 432 KTYTSLLHVLSKKNRMKEADDLF-KKITSEGVLPDAIMFNALIDGHCSNSNVKGAFELLK 490

Query: 534 QMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYG 593
            M    +PP+  T+N ++         + A  L   M R G  P  +++  LI      G
Sbjct: 491 DMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRG 550

Query: 594 DFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCH 653
           D  +A  + + +   G    VL YN +++  C+    D+ E ++++M    + PD +T  
Sbjct: 551 DIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEGDLAEELLKEMVSKGMTPDDTTYF 610

Query: 654 FVFSG 658
            +  G
Sbjct: 611 TLIEG 615



 Score = 68.9 bits (167), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 81/179 (45%), Gaps = 3/179 (1%)

Query: 488 GAEGMIRELIQYFCDSKTPLG---TPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNA 544
           G    IRE+ ++   S+  LG   +  ++ ++ S  +   +  A E F  MK  G+ P  
Sbjct: 127 GTTNSIREIFEFLAASRDRLGFKSSIVFDYLIKSCCDMNRADEAFECFYTMKEKGVLPTI 186

Query: 545 ATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDL 604
            T N ++     +   ++A  L + M R        T+  +I +L   G   +A + +  
Sbjct: 187 ETCNSLLSLFLKLNRTEAAWVLYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGH 246

Query: 605 VSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
           +   G+  +++ YNTI+   C  GR++  + I+  M + K++PD  T   + SG    G
Sbjct: 247 METSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQG 305



 Score = 56.2 bits (134), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 67/153 (43%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           T N++L   ++   +  A  ++ +M    I  +  T+NIMI+        K A   V  M
Sbjct: 188 TCNSLLSLFLKLNRTEAAWVLYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHM 247

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
              G  P  +TY  ++      G  + A  +L  +  + I  D   Y +++   C++GR+
Sbjct: 248 ETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRL 307

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
           +    I E+M Q  ++P     + +  G+ N G
Sbjct: 308 EEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKG 340


>gi|357443403|ref|XP_003591979.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355481027|gb|AES62230.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 873

 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 76/276 (27%), Positives = 130/276 (47%), Gaps = 15/276 (5%)

Query: 393 TNPKPF-SAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGN 450
           T PKP     LAA     +P    +IF KM++ + RP++ T   L +     N+ +    
Sbjct: 135 TIPKPLLDTSLAAYVISKQPHLGHQIFNKMKRLRFRPNLLTCNTLLNALVRSNSSHSL-- 192

Query: 451 MFSQ--VDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLG 508
           +FS+     A ++         N + H + S  N  +AL    +I ++ +Y C    P  
Sbjct: 193 VFSREVFQDAVKLGVQPNVNTFNILIHGYCSDNNTEEALR---LINQMGEYGC---CP-D 245

Query: 509 TPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVS 568
             TYNTVL +L +  +  +  ++  QMK  G+ PN  TYNI++     ++  K A+ ++ 
Sbjct: 246 NVTYNTVLTALCKRSQLTQVRDLLLQMKNSGLFPNRNTYNILVHGYCKLKWLKEAAEVIE 305

Query: 569 MMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLD-LVSLEGIPHDVLLYNTILKKACEK 627
           +M   G  P   TY  +++ L D G  DEA+ L D + S + +P DV+ YNT++    E 
Sbjct: 306 LMTGKGMLPDVWTYNTMVRGLCDEGKIDEAVRLRDKMESFKLVP-DVVTYNTLIDGCFEH 364

Query: 628 GRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
              D    ++E+M    V+ +  T + +   +   G
Sbjct: 365 RGSDAAFKLVEEMKARGVKENGVTHNIMIKWFCTEG 400



 Score = 79.3 bits (194), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 85/388 (21%), Positives = 155/388 (39%), Gaps = 58/388 (14%)

Query: 295 SFSDVIHA-CGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           +++ V+ A C R+Q + + + L+LQM++ GL P+ +TY+  +      + L+   EV+++
Sbjct: 248 TYNTVLTALCKRSQLTQVRD-LLLQMKNSGLFPNRNTYNILVHGYCKLKWLKEAAEVIEL 306

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPER 413
           M    + P   T  T+               L D+                     K + 
Sbjct: 307 MTGKGMLPDVWTYNTM------------VRGLCDE--------------------GKIDE 334

Query: 414 AIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNN 472
           A+++  KM   KL PD+ TY  L                F    S      +E +M    
Sbjct: 335 AVRLRDKMESFKLVPDVVTYNTLID------------GCFEHRGSDAAFKLVE-EMKARG 381

Query: 473 IQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAM 529
           ++ + ++   ++K    EG I E             +P   TYNT+++   +A +   A 
Sbjct: 382 VKENGVTHNIMIKWFCTEGKIDEASNVMVKMVESGFSPDCFTYNTMINGYCKAGKMAEAY 441

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
           ++  +M   G+  +  T N ++    + +    A  L     + G+    +TY  LI   
Sbjct: 442 KMMDEMGRKGLKLDTFTLNTLLHTMCLEKQLDDAYTLTMKARKRGYILDEVTYGTLIMGY 501

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649
                 D AL L + +   GI   ++ YNTI++  C  G+ D     + ++ +  + PD 
Sbjct: 502 FKDEQADRALKLWEEMKETGIVATIITYNTIIRGLCLSGKTDQAVDKLNELLEKGLVPDE 561

Query: 650 STCHFVFSGYVNCG-------FHNSAME 670
           ST + +  GY   G       FHN  +E
Sbjct: 562 STSNIIIHGYCWEGAVEKAFQFHNKMVE 589



 Score = 70.9 bits (172), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 71/314 (22%), Positives = 122/314 (38%), Gaps = 49/314 (15%)

Query: 322 LGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDL 381
           LG+QP+ +T++  I    SD      + ++  M +    P + T  T+     K  +L  
Sbjct: 205 LGVQPNVNTFNILIHGYCSDNNTEEALRLINQMGEYGCCPDNVTYNTVLTALCKRSQLTQ 264

Query: 382 AEALLDQISRC---TNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFS 437
              LL Q+       N   ++  +     +   + A ++   M  K + PD+ TY  +  
Sbjct: 265 VRDLLLQMKNSGLFPNRNTYNILVHGYCKLKWLKEAAEVIELMTGKGMLPDVWTYNTM-- 322

Query: 438 LFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELI 497
               V    +EG    ++D A R                                +R+ +
Sbjct: 323 ----VRGLCDEG----KIDEAVR--------------------------------LRDKM 342

Query: 498 QYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSII 557
           + F   K      TYNT++    E + S  A ++ ++MK  G+  N  T+NIMI      
Sbjct: 343 ESF---KLVPDVVTYNTLIDGCFEHRGSDAAFKLVEEMKARGVKENGVTHNIMIKWFCTE 399

Query: 558 RCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLY 617
                AS ++  MV  GF P   TY  +I      G   EA  ++D +  +G+  D    
Sbjct: 400 GKIDEASNVMVKMVESGFSPDCFTYNTMINGYCKAGKMAEAYKMMDEMGRKGLKLDTFTL 459

Query: 618 NTILKKACEKGRID 631
           NT+L   C + ++D
Sbjct: 460 NTLLHTMCLEKQLD 473



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 89/182 (48%), Gaps = 7/182 (3%)

Query: 510 PTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSM 569
           P  +T L + V +++ H   +IF +MK     PN  T N +++  +++R   S S + S 
Sbjct: 139 PLLDTSLAAYVISKQPHLGHQIFNKMKRLRFRPNLLTCNTLLN--ALVRSNSSHSLVFSR 196

Query: 570 -----MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKA 624
                 V+ G  P   T+  LI       + +EAL L++ +   G   D + YNT+L   
Sbjct: 197 EVFQDAVKLGVQPNVNTFNILIHGYCSDNNTEEALRLINQMGEYGCCPDNVTYNTVLTAL 256

Query: 625 CEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEV 684
           C++ ++  +  ++ QM  + + P+ +T + +  GY    +   A E +++++ + +  +V
Sbjct: 257 CKRSQLTQVRDLLLQMKNSGLFPNRNTYNILVHGYCKLKWLKEAAEVIELMTGKGMLPDV 316

Query: 685 ST 686
            T
Sbjct: 317 WT 318



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 81/407 (19%), Positives = 162/407 (39%), Gaps = 43/407 (10%)

Query: 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
           R +++ ++H   + +    A +++  M   G+ P   TY+  +R +  +  +   + +  
Sbjct: 281 RNTYNILVHGYCKLKWLKEAAEVIELMTGKGMLPDVWTYNTMVRGLCDEGKIDEAVRLRD 340

Query: 353 IMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMD 409
            M+   L P   T  TL   C +    D A  L++++       N    +  +    T  
Sbjct: 341 KMESFKLVPDVVTYNTLIDGCFEHRGSDAAFKLVEEMKARGVKENGVTHNIMIKWFCTEG 400

Query: 410 KPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNM---FSQVDSAKRINAIE 465
           K + A  +  KM +    PD  TY  +      +N   + G M   +  +D   R   ++
Sbjct: 401 KIDEASNVMVKMVESGFSPDCFTYNTM------INGYCKAGKMAEAYKMMDEMGR-KGLK 453

Query: 466 MD-MARNNIQHSHISMKNL-------LKALGAEGMIRE------LIQYFCDSKTPLGTP- 510
           +D    N + H+    K L       +KA     ++ E      ++ YF D +       
Sbjct: 454 LDTFTLNTLLHTMCLEKQLDDAYTLTMKARKRGYILDEVTYGTLIMGYFKDEQADRALKL 513

Query: 511 --------------TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSI 556
                         TYNT++  L  + ++ +A++   ++   G+ P+ +T NI+I     
Sbjct: 514 WEEMKETGIVATIITYNTIIRGLCLSGKTDQAVDKLNELLEKGLVPDESTSNIIIHGYCW 573

Query: 557 IRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLL 616
               + A    + MV     P   T   L++ L   G  ++ L L +    +G P D + 
Sbjct: 574 EGAVEKAFQFHNKMVEHSLKPDIFTCNILLRGLCREGMLEKGLTLFNTWISKGKPMDTVT 633

Query: 617 YNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
           YN I+   C++ R++    ++ +M    ++PD  T + + +G    G
Sbjct: 634 YNIIISSFCKERRLEDAFDLMTEMEGKNLEPDRYTYNAIVTGLTKAG 680



 Score = 48.9 bits (115), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 111/567 (19%), Positives = 211/567 (37%), Gaps = 96/567 (16%)

Query: 121 NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLC 180
           N   + +++   C     EEA  LI  +GE YG  P    YN+ L A  K   +      
Sbjct: 210 NVNTFNILIHGYCSDNNTEEALRLINQMGE-YGCCPDNVTYNTVLTALCKRSQLTQVRDL 268

Query: 181 LDLMDSRMVGKNEVTYTELL----KLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWS 236
           L  M +  +  N  TY  L+    KL  W K  + V E+         ++   +   VW+
Sbjct: 269 LLQMKNSGLFPNRNTYNILVHGYCKLK-WLKEAAEVIEL---------MTGKGMLPDVWT 318

Query: 237 F----------------TRLRDLKSAYETLQHMVAL-AMMGKLYINRTSEG--RLRSSRL 277
           +                 RLRD   +++ +  +V    ++   + +R S+   +L     
Sbjct: 319 YNTMVRGLCDEGKIDEAVRLRDKMESFKLVPDVVTYNTLIDGCFEHRGSDAAFKLVEEMK 378

Query: 278 DIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRA 337
              +  N +    +++W  ++     G+      A  +M++M   G  P   TY+  I  
Sbjct: 379 ARGVKENGVTHNIMIKWFCTE-----GKIDE---ASNVMVKMVESGFSPDCFTYNTMING 430

Query: 338 IVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEAL----------LD 387
                 +    +++  M +  LK    T+ TL        +LD A  L          LD
Sbjct: 431 YCKAGKMAEAYKMMDEMGRKGLKLDTFTLNTLLHTMCLEKQLDDAYTLTMKARKRGYILD 490

Query: 388 QISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLF---------- 436
           +++       +   +      ++ +RA+K++ +M++  +   I TY  +           
Sbjct: 491 EVT-------YGTLIMGYFKDEQADRALKLWEEMKETGIVATIITYNTIIRGLCLSGKTD 543

Query: 437 SLFGNVNAPYEEGNMFSQVDSAKRIN------AIEMDMARNN--IQHSH----ISMKNLL 484
                +N   E+G +  +  S   I+      A+E     +N  ++HS      +   LL
Sbjct: 544 QAVDKLNELLEKGLVPDESTSNIIIHGYCWEGAVEKAFQFHNKMVEHSLKPDIFTCNILL 603

Query: 485 KALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIP 541
           + L  EGM+ +   L   +     P+ T TYN ++ S  + +    A ++  +M+   + 
Sbjct: 604 RGLCREGMLEKGLTLFNTWISKGKPMDTVTYNIIISSFCKERRLEDAFDLMTEMEGKNLE 663

Query: 542 PNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQT-----------MTYTALIKILL 590
           P+  TYN ++   +     + A  L       G   +T           M Y+  I  L 
Sbjct: 664 PDRYTYNAIVTGLTKAGRTEEAEKLALKFAEKGQQVKTQDTSPELGTSDMMYSEQISSLC 723

Query: 591 DYGDFDEALNLLDLVSLEGIPHDVLLY 617
             G + +A+ L      +G+  +   Y
Sbjct: 724 TQGKYKDAMKLFQQAEQKGVSLNKYTY 750


>gi|449469499|ref|XP_004152457.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Cucumis sativus]
 gi|449487784|ref|XP_004157799.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Cucumis sativus]
          Length = 502

 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 77/351 (21%), Positives = 146/351 (41%), Gaps = 25/351 (7%)

Query: 319 MQSLGLQPS-SHTYDGFIRAIVSDRGLRNGMEVLKI---MQQNNLKPQDSTIATLSVECS 374
            + L   PS +H+   F  AI     +R+   V  +   M+   + P   T A ++    
Sbjct: 99  FKHLEYHPSYAHSASSFDHAIDIAGRMRDYKTVWALVARMRARRIGPSSKTFAIIAERFV 158

Query: 375 KALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERA----IKIFAKMRQKLRPDIR 430
            A + D A  +   +     P+   +F    D + K +R       +F  +R K + D+ 
Sbjct: 159 AAGKPDRAIKVFLSMREHGCPQDLHSFNTILDILCKSKRVEMAYNNLFKVLRGKFKADVV 218

Query: 431 TYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAE 490
           +Y ++              N +  +    +   +  +M    +  +  +   LLK     
Sbjct: 219 SYNII-------------ANGWCLIKRTPKALEVLKEMVERGLTPTITTYNILLKGYFRA 265

Query: 491 GMIRELIQYFCDSK---TPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATY 547
           G ++E  ++F   K     +   TY T++H      E  RA ++F +M   GI P+ ATY
Sbjct: 266 GQLKEAWEFFLQMKEREVEIDVVTYTTMVHGFGVVGEIKRARKVFNEMVGEGILPSTATY 325

Query: 548 NIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSL 607
           N MI         ++A  +   MV+ G+ P   TY  +I+ L   G+ D+A+  ++ +  
Sbjct: 326 NAMIQVLCKKDSVENAVLMFEEMVKKGYVPNLTTYNVVIRGLFHAGNMDKAMEFIERMKT 385

Query: 608 EGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
           +G   +V  YN  ++  C+ G ++    + E+M Q  + P+  T + + S 
Sbjct: 386 DGCEPNVQTYNVAIRYFCDAGDVEKGLSMFEKMGQGSL-PNLDTYNVLISA 435



 Score = 77.0 bits (188), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 66/267 (24%), Positives = 121/267 (45%), Gaps = 21/267 (7%)

Query: 401 FLAACDTMDKPERAIKIFAKMRQKLRP-DIRTYELLFSLF---GNVNAPYEEGNMFSQVD 456
           F+AA     KP+RAIK+F  MR+   P D+ ++  +  +      V   Y   N+F  + 
Sbjct: 157 FVAA----GKPDRAIKVFLSMREHGCPQDLHSFNTILDILCKSKRVEMAYN--NLFKVLR 210

Query: 457 SAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVL 516
              + + +    + N I +    +K   KAL    +++E+++      TP  T TYN +L
Sbjct: 211 GKFKADVV----SYNIIANGWCLIKRTPKALE---VLKEMVE---RGLTPTIT-TYNILL 259

Query: 517 HSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFY 576
                A +   A E F QMK   +  +  TY  M+    ++   K A  + + MV +G  
Sbjct: 260 KGYFRAGQLKEAWEFFLQMKEREVEIDVVTYTTMVHGFGVVGEIKRARKVFNEMVGEGIL 319

Query: 577 PQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFI 636
           P T TY A+I++L      + A+ + + +  +G   ++  YN +++     G +D     
Sbjct: 320 PSTATYNAMIQVLCKKDSVENAVLMFEEMVKKGYVPNLTTYNVVIRGLFHAGNMDKAMEF 379

Query: 637 IEQMHQNKVQPDPSTCHFVFSGYVNCG 663
           IE+M  +  +P+  T +     + + G
Sbjct: 380 IERMKTDGCEPNVQTYNVAIRYFCDAG 406



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 35/161 (21%), Positives = 78/161 (48%), Gaps = 1/161 (0%)

Query: 527 RAMEIFKQMKT-CGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
           +A++ FK ++       +A++++  ID    +R +K+  ALV+ M      P + T+  +
Sbjct: 94  KALQFFKHLEYHPSYAHSASSFDHAIDIAGRMRDYKTVWALVARMRARRIGPSSKTFAII 153

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
            +  +  G  D A+ +   +   G P D+  +NTIL   C+  R+++    + ++ + K 
Sbjct: 154 AERFVAAGKPDRAIKVFLSMREHGCPQDLHSFNTILDILCKSKRVEMAYNNLFKVLRGKF 213

Query: 646 QPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           + D  + + + +G+        A+E L+ +  R L   ++T
Sbjct: 214 KADVVSYNIIANGWCLIKRTPKALEVLKEMVERGLTPTITT 254



 Score = 41.6 bits (96), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 33/147 (22%), Positives = 67/147 (45%), Gaps = 5/147 (3%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ ++H  G       A ++  +M   G+ PS+ TY+  I+ +     + N + + + M
Sbjct: 289 TYTTMVHGFGVVGEIKRARKVFNEMVGEGILPSTATYNAMIQVLCKKDSVENAVLMFEEM 348

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR--C-TNPKPFS-AFLAACDTMDK 410
            +    P  +T   +      A  +D A   ++++    C  N + ++ A    CD  D 
Sbjct: 349 VKKGYVPNLTTYNVVIRGLFHAGNMDKAMEFIERMKTDGCEPNVQTYNVAIRYFCDAGD- 407

Query: 411 PERAIKIFAKMRQKLRPDIRTYELLFS 437
            E+ + +F KM Q   P++ TY +L S
Sbjct: 408 VEKGLSMFEKMGQGSLPNLDTYNVLIS 434


>gi|449438681|ref|XP_004137116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Cucumis sativus]
          Length = 749

 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 85/371 (22%), Positives = 155/371 (41%), Gaps = 21/371 (5%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIV-SDRGLRNGMEVLKIM 354
           F  V+ +C R      A  ++   +S G  P   +Y+  + A++ + + ++    + K M
Sbjct: 135 FDLVVKSCARVNLINKALSIVNLAKSYGFMPGVLSYNAILDAVIRTKQSVKIAEGIFKEM 194

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKP 411
            ++ + P   T   L      A  L++      ++ R     N   ++  + A   + K 
Sbjct: 195 VESGVSPNVYTYNILIRGFCTAGNLEMGLFFFGEMERNGCLPNVVTYNTIIDAYCKLRKI 254

Query: 412 ERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
             A K+   M  K L P++ +Y ++      +N    EG M       K  + I  +M++
Sbjct: 255 GEAFKLLRLMALKGLNPNLISYNVV------INGLCREGQM-------KETSEILEEMSK 301

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHR 527
                  ++   L+      G   + +    +      +P   TY T+++S+ +A   +R
Sbjct: 302 RRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNR 361

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           AME   QM+  G+ PN  TY  +ID  S     K A  ++  MV +GF P  +TY ALI 
Sbjct: 362 AMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALIN 421

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
                G  ++A  LL  +   G   DV+ Y+TI+   C    ++    +  +M    + P
Sbjct: 422 GHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISP 481

Query: 648 DPSTCHFVFSG 658
           D +T   +  G
Sbjct: 482 DVATYSSLIQG 492



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 79/373 (21%), Positives = 166/373 (44%), Gaps = 21/373 (5%)

Query: 295 SFSDVIHACGRTQNS-GLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           S++ ++ A  RT+ S  +AE +  +M   G+ P+ +TY+  IR   +   L  G+     
Sbjct: 169 SYNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLFFFGE 228

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQIS-RCTNPK--PFSAFLAACDTMDK 410
           M++N   P   T  T+     K  ++  A  LL  ++ +  NP    ++  +       +
Sbjct: 229 MERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQ 288

Query: 411 PERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
            +   +I  +M +++  PD  T+  L + + NV      GN    +        +  +M 
Sbjct: 289 MKETSEILEEMSKRRYVPDRVTFNTLINGYCNV------GNFHQAL-------VLHAEMV 335

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESH 526
           +N +  + ++   L+ ++   G +   +++    +     P   TY T++    +     
Sbjct: 336 KNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLK 395

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
           +A +I K+M   G  P   TYN +I+   I+   + AS L+  M+  GF P  ++Y+ +I
Sbjct: 396 QAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTII 455

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
                  + ++A  L   +  +GI  DV  Y+++++  C++ R+  +  + ++M    + 
Sbjct: 456 SGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLP 515

Query: 647 PDPSTCHFVFSGY 659
           PD  T   + + Y
Sbjct: 516 PDEVTYTSLINAY 528



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 116/571 (20%), Positives = 223/571 (39%), Gaps = 77/571 (13%)

Query: 75  LLNLGHAHHSL-GADDFFHILNYCARSPDPLFVME-TWRMMEEKEIGLNNKCYLLMMQAL 132
           ++NL  ++  + G   +  IL+   R+   + + E  ++ M E  +  N   Y ++++  
Sbjct: 154 IVNLAKSYGFMPGVLSYNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYNILIRGF 213

Query: 133 CKGGYLEEASNLIYFLGE--RYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVG 190
           C  G LE     ++F GE  R G  P +  YN+ + A  KL  +  A   L LM  + + 
Sbjct: 214 CTAGNLEMG---LFFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLN 270

Query: 191 KNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETL 250
            N ++Y  ++     +  +    EI E+          S R++V        L + Y  +
Sbjct: 271 PNLISYNVVINGLCREGQMKETSEILEE---------MSKRRYVPDRVTFNTLINGYCNV 321

Query: 251 QHM-VALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNS 309
            +   AL +  ++  N  S   +                      +++ +I++  +  N 
Sbjct: 322 GNFHQALVLHAEMVKNGLSPNVV----------------------TYTTLINSMCKAGNL 359

Query: 310 GLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTI-AT 368
             A + + QM+  GL P+  TY   I        L+   +++K M +N   P   T  A 
Sbjct: 360 NRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNAL 419

Query: 369 LSVECSKALELDLAEALLDQISRCTNPK--PFSAFLAACDTMDKPERAIKIFAKMRQK-L 425
           ++  C      D +  L + I R   P    +S  ++      + E+A ++  +M  K +
Sbjct: 420 INGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGI 479

Query: 426 RPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLK 485
            PD+ TY  L           E  ++F ++ S               +    ++  +L+ 
Sbjct: 480 SPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSL-------------GLPPDEVTYTSLIN 526

Query: 486 ALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPP 542
           A   EG + + ++   +      +P   TYN +++   +   +  A  +  ++      P
Sbjct: 527 AYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVP 586

Query: 543 NAATYNIMIDCCSIIRCFKSASAL----------------VSMMVRDGFYPQTMTYTALI 586
           N  TYN +ID C+ +  FKSA AL                +  M++ G+      Y  +I
Sbjct: 587 NEITYNTLIDNCNNLE-FKSALALMKGFCMKGLMNEADRVLESMLQKGYKLNEEVYNVII 645

Query: 587 KILLDYGDFDEALNLLDLVSLEGI-PHDVLL 616
                 G+ ++A NL   +   G  PH V +
Sbjct: 646 HGHSKVGNIEKAYNLYKEMLHSGFAPHSVTI 676



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 96/229 (41%), Gaps = 6/229 (2%)

Query: 452 FSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPT 511
            S V+ AK    +   ++ N I  + I  K  +K   AEG+ +E+++    S       T
Sbjct: 152 LSIVNLAKSYGFMPGVLSYNAILDAVIRTKQSVKI--AEGIFKEMVE----SGVSPNVYT 205

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           YN ++     A      +  F +M+  G  PN  TYN +ID    +R    A  L+ +M 
Sbjct: 206 YNILIRGFCTAGNLEMGLFFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMA 265

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
             G  P  ++Y  +I  L   G   E   +L+ +S      D + +NT++   C  G   
Sbjct: 266 LKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFH 325

Query: 632 VIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRML 680
               +  +M +N + P+  T   + +     G  N AME L  +  R L
Sbjct: 326 QALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGL 374



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 69/309 (22%), Positives = 133/309 (43%), Gaps = 33/309 (10%)

Query: 400 AFLAACDTMDKPERAIKI----FAKMRQK-LRPDIRTYELLFSLF---GNVNAPYEEGNM 451
           ++ A  D + + ++++KI    F +M +  + P++ TY +L   F   GN+    E G  
Sbjct: 169 SYNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTAGNL----EMGLF 224

Query: 452 FSQVDSAKRINAIEMDMARNNIQHSHISMKN------LLKALGAEGMIRELIQYFCDSKT 505
           F      +R   +   +  N I  ++  ++       LL+ +  +G+   LI        
Sbjct: 225 F--FGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLI-------- 274

Query: 506 PLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASA 565
                +YN V++ L    +     EI ++M      P+  T+N +I+    +  F  A  
Sbjct: 275 -----SYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALV 329

Query: 566 LVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKAC 625
           L + MV++G  P  +TYT LI  +   G+ + A+  LD +   G+  +   Y T++    
Sbjct: 330 LHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFS 389

Query: 626 EKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVS 685
           ++G +     I+++M +N   P   T + + +G+   G    A   LQ +  R    +V 
Sbjct: 390 QQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVV 449

Query: 686 TLEEKRSDF 694
           +     S F
Sbjct: 450 SYSTIISGF 458



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 119/554 (21%), Positives = 208/554 (37%), Gaps = 85/554 (15%)

Query: 111 RMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAK 170
           R+M  K +  N   Y +++  LC+ G ++E S ++  + +R  + P    +N+ +     
Sbjct: 262 RLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYV-PDRVTFNTLINGYCN 320

Query: 171 LHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWE---DYIKHYSLSI 227
           + +   A +    M    +  N VTYT L+       NL+   E  +   D   H +   
Sbjct: 321 VGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRT 380

Query: 228 FSLRKFVWSFTRLRDLKSAYETLQHMV------ALAMMGKLYINRTSEGRLR--SSRLDI 279
           ++    +  F++   LK AY+ ++ MV       +     L       GR+   S  L  
Sbjct: 381 YT--TLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQE 438

Query: 280 PIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIV 339
            I    +P +     S+S +I    R Q    A QL ++M + G+ P   TY   I+ + 
Sbjct: 439 MIERGFIPDV----VSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLC 494

Query: 340 SDRGLRNGMEVLKIMQQNNLKPQDSTIATL-SVECSKALELDLAEALLDQISRCTNPKPF 398
             R L    ++ + M    L P + T  +L +  C   +E DL                 
Sbjct: 495 KQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYC---IEGDL----------------- 534

Query: 399 SAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDS 457
                        ++A+++  +M QK   PDI TY +L + F          N  S+   
Sbjct: 535 -------------DKALRLHDEMIQKGFSPDIVTYNVLINGF----------NKQSRTKE 571

Query: 458 AKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELI-QYFCDSKTPLGTPTYNTVL 516
           AKR+                     LLK L  E +  E+      D+   L   +   ++
Sbjct: 572 AKRL---------------------LLKLLYEESVPNEITYNTLIDNCNNLEFKSALALM 610

Query: 517 HSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFY 576
                    + A  + + M   G   N   YN++I   S +   + A  L   M+  GF 
Sbjct: 611 KGFCMKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHSGFA 670

Query: 577 PQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFI 636
           P ++T  AL K L   G   E   LLD         +  L   ++    ++G +D +  +
Sbjct: 671 PHSVTIMALAKSLYHEGKEVELNQLLDYTLKSCRITEAALAKVLIGINSKEGNMDAVFNV 730

Query: 637 IEQMHQNKVQPDPS 650
           ++ M  + + P  S
Sbjct: 731 LKDMALSGLLPYSS 744


>gi|357481229|ref|XP_003610900.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512235|gb|AES93858.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1508

 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 78/360 (21%), Positives = 151/360 (41%), Gaps = 25/360 (6%)

Query: 299 VIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNN 358
           ++   G+    G+A ++  + +S+ +  +   Y+  +     +       E+  +M++  
Sbjct: 236 ILSVLGKANQEGIAVEIFAKAESV-IADTVQVYNAMMGVYARNGNFEKVNEMFNLMRERG 294

Query: 359 LKPQDSTIATLSVECSK--ALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDKPE 412
            +P   +  TL     K  A    LA  LLD++ +    +P    ++  ++AC      +
Sbjct: 295 CEPDIVSFNTLINAKVKSCATVSGLAIELLDEVGKF-GLRPDIITYNTLISACSRESNLK 353

Query: 413 RAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471
            AI +F+ M   + +PD+ TY  + S++G      +  ++F ++ S             N
Sbjct: 354 EAIGVFSHMESNRCQPDLWTYNAMISVYGRCGFALKAEHLFEKLKS-------------N 400

Query: 472 NIQHSHISMKNLLKALGAEG---MIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRA 528
                 ++  +LL A   EG    +R++ +            TYNT++H   +      A
Sbjct: 401 GFSPDAVTYNSLLYAFSKEGNTEKVRDISEEMVKMGFGKDEMTYNTIIHMYGKHGRHDEA 460

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
           + +++ MK+ G  P+A TY ++ID        + AS ++S M+  G  P   TY+ALI  
Sbjct: 461 LRLYRDMKSSGRNPDAVTYTVLIDLLGKASKIEEASKVMSEMLDAGVKPTLHTYSALICA 520

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
               G   EA    + +   GI  D L Y+ +L        I     + ++M +    PD
Sbjct: 521 YAKVGRRVEAEETFNRMRESGIKADHLAYSVMLDFFLRFNEIKKAAALYQEMIEAGFTPD 580



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/267 (23%), Positives = 115/267 (43%), Gaps = 25/267 (9%)

Query: 412 ERAIKIFA--KMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQV-----DSAKRINAI 464
           +RA++++    M+Q    + R    + S+ G  N       +F++      D+ +  NA+
Sbjct: 211 QRALELYECLTMQQWYATNARMVATILSVLGKANQEGIAVEIFAKAESVIADTVQVYNAM 270

Query: 465 EMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVE--A 522
               ARN        M NL++  G E  I                 ++NT++++ V+  A
Sbjct: 271 MGVYARNGNFEKVNEMFNLMRERGCEPDI----------------VSFNTLINAKVKSCA 314

Query: 523 QESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTY 582
             S  A+E+  ++   G+ P+  TYN +I  CS     K A  + S M  +   P   TY
Sbjct: 315 TVSGLAIELLDEVGKFGLRPDIITYNTLISACSRESNLKEAIGVFSHMESNRCQPDLWTY 374

Query: 583 TALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642
            A+I +    G   +A +L + +   G   D + YN++L    ++G  + +  I E+M +
Sbjct: 375 NAMISVYGRCGFALKAEHLFEKLKSNGFSPDAVTYNSLLYAFSKEGNTEKVRDISEEMVK 434

Query: 643 NKVQPDPSTCHFVFSGYVNCGFHNSAM 669
                D  T + +   Y   G H+ A+
Sbjct: 435 MGFGKDEMTYNTIIHMYGKHGRHDEAL 461



 Score = 60.5 bits (145), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 68/298 (22%), Positives = 117/298 (39%), Gaps = 21/298 (7%)

Query: 361 PQDSTIATLSV-ECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFA 419
           P D      SV + S    L+L E L  Q    TN +  +  L+     ++   A++IFA
Sbjct: 195 PTDFCFVVKSVGQSSWQRALELYECLTMQQWYATNARMVATILSVLGKANQEGIAVEIFA 254

Query: 420 KMRQKLRPDIRTYELLFSLFGNVNAPYEEGN-MFSQVDSAKRINAIEMDMARNNIQHSHI 478
           K    +   ++ Y  +  ++   N  +E+ N MF+ +    R    E D+         +
Sbjct: 255 KAESVIADTVQVYNAMMGVYAR-NGNFEKVNEMFNLM----RERGCEPDI---------V 300

Query: 479 SMKNLLKA-----LGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFK 533
           S   L+ A         G+  EL+             TYNT++ +         A+ +F 
Sbjct: 301 SFNTLINAKVKSCATVSGLAIELLDEVGKFGLRPDIITYNTLISACSRESNLKEAIGVFS 360

Query: 534 QMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYG 593
            M++    P+  TYN MI           A  L   +  +GF P  +TY +L+      G
Sbjct: 361 HMESNRCQPDLWTYNAMISVYGRCGFALKAEHLFEKLKSNGFSPDAVTYNSLLYAFSKEG 420

Query: 594 DFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
           + ++  ++ + +   G   D + YNTI+    + GR D    +   M  +   PD  T
Sbjct: 421 NTEKVRDISEEMVKMGFGKDEMTYNTIIHMYGKHGRHDEALRLYRDMKSSGRNPDAVT 478



 Score = 60.1 bits (144), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 77/389 (19%), Positives = 160/389 (41%), Gaps = 22/389 (5%)

Query: 296  FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
            +  +IH C +++   +A QL   M+  G++PS   Y   +              +L   +
Sbjct: 720  YESLIHECTKSEQFDIASQLFSDMRFNGVEPSECLYQSMVSVYCRIGFPETAQHLLYHAE 779

Query: 356  QNNLKPQDSTIATLS-VECSKALEL-DLAEALLDQI-SRCT--NPKPFSAFLAACDTMDK 410
            +N++   + T+  +  +E    L++   AE++++ +  RC+  + K ++A + A      
Sbjct: 780  KNDIILDNVTVHIIDIIETYGKLKMWQSAESIVENLRQRCSKMDRKVWNALIHAYAFSGC 839

Query: 411  PERAIKIF-AKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
             ERA  IF   MR+   P +       S+ G + A   +G +         +  +  ++ 
Sbjct: 840  YERARAIFNTMMREGPSPTVE------SVNGLLQALIVDGRL-------SELYVVIQELQ 886

Query: 470  RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPT---YNTVLHSLVEAQESH 526
              +++ S  S+  +L+A    G + E+ + +   K     PT   Y  ++  L   +   
Sbjct: 887  DMDLKISKSSILLMLEAFAQAGNLFEVQKVYNGMKAAGYFPTMHLYRLMIGLLCRFKRVR 946

Query: 527  RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
                +  +M   G  P+   +N ++   S I  F++   +  M+   G  P   TY  LI
Sbjct: 947  DVRVMLSEMGEAGFKPDLQIFNSVLKLYSSIEEFQNMGVIYQMIQDAGLAPDEETYNTLI 1006

Query: 587  KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
             +       +E L+L+  +   G+      Y +++    ++   D  E + E++  N  +
Sbjct: 1007 TMYCRDHRPEEGLSLMHKMKSLGLEPKRDTYRSMIAAFSKQQLYDQAEELFEELRSNGYK 1066

Query: 647  PDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
             D S  H +   Y   G H  A   L+++
Sbjct: 1067 LDRSFYHLMMKMYRTSGDHQKAENLLEIM 1095



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 66/339 (19%), Positives = 129/339 (38%), Gaps = 57/339 (16%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ +I AC R  N   A  +   M+S   QP   TY+  I              + + +
Sbjct: 338 TYNTLISACSRESNLKEAIGVFSHMESNRCQPDLWTYNAMISVYGRCGFALKAEHLFEKL 397

Query: 355 QQNNLKPQ----DSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDK 410
           + N   P     +S +   S E +     D++E ++ ++    +   ++  +       +
Sbjct: 398 KSNGFSPDAVTYNSLLYAFSKEGNTEKVRDISEEMV-KMGFGKDEMTYNTIIHMYGKHGR 456

Query: 411 PERAIKIFAKMRQKLR-PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
            + A++++  M+   R PD  TY +L  L G            S+++ A ++ +  +D  
Sbjct: 457 HDEALRLYRDMKSSGRNPDAVTYTVLIDLLGKA----------SKIEEASKVMSEMLDAG 506

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAM 529
                H                                   TY+ ++ +  +      A 
Sbjct: 507 VKPTLH-----------------------------------TYSALICAYAKVGRRVEAE 531

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
           E F +M+  GI  +   Y++M+D        K A+AL   M+  GF P T  Y  ++  L
Sbjct: 532 ETFNRMRESGIKADHLAYSVMLDFFLRFNEIKKAAALYQEMIEAGFTPDTGLYEVMLPAL 591

Query: 590 L--DYGDFDEALNLLDLVSLEGI-PHDVLLYNTILKKAC 625
           +  + GD  E + + D   L  + PHD+   + ++K  C
Sbjct: 592 VRENMGDVIERV-VQDTKELGSMNPHDI--SSVLVKGGC 627



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 101/496 (20%), Positives = 184/496 (37%), Gaps = 100/496 (20%)

Query: 290  KVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGME 349
            K+ R  ++ +IHA   +     A  +   M   G  P+  + +G ++A++ D  L     
Sbjct: 821  KMDRKVWNALIHAYAFSGCYERARAIFNTMMREGPSPTVESVNGLLQALIVDGRLSELYV 880

Query: 350  VLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMD 409
            V++ +Q  +LK   S+I  +       LE       L ++ +  N    + +        
Sbjct: 881  VIQELQDMDLKISKSSILLM-------LEAFAQAGNLFEVQKVYNGMKAAGYF------- 926

Query: 410  KPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
                             P +  Y L+  L        +   M S++  A      + D+ 
Sbjct: 927  -----------------PTMHLYRLMIGLLCRFKRVRDVRVMLSEMGEA----GFKPDL- 964

Query: 470  RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAM 529
               I +S + + + ++     G+I ++IQ   D+       TYNT++            +
Sbjct: 965  --QIFNSVLKLYSSIEEFQNMGVIYQMIQ---DAGLAPDEETYNTLITMYCRDHRPEEGL 1019

Query: 530  EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
             +  +MK+ G+ P   TY  MI   S  + +  A  L   +  +G+      Y  ++K+ 
Sbjct: 1020 SLMHKMKSLGLEPKRDTYRSMIAAFSKQQLYDQAEELFEELRSNGYKLDRSFYHLMMKMY 1079

Query: 590  LDYGDFDEALNLLDLVSLEGI-PH----------------------------------DV 614
               GD  +A NLL+++   GI P+                                  D 
Sbjct: 1080 RTSGDHQKAENLLEIMKEAGIEPNTATMHLLMVSYGKSGQPEEADRILKNLRTMGAVLDT 1139

Query: 615  LLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS--TCHF---VFSGYVNCGFHNSAM 669
            L Y++++    +KG        + +M +  ++PD    TC       SG VN    N+ +
Sbjct: 1140 LPYSSVIDAYLKKGDAKAGIEKLTEMKEAAIEPDHRIWTCFIRAASLSGEVNDA--NNLL 1197

Query: 670  EALQV----LSMRMLCEEVSTLEEKRSDFEDLILAEDSEAESRILQFCEDSNENLAFTAA 725
             ALQ     L +R+L E+  +L           ++E  +   R L+  ED N    F  A
Sbjct: 1198 NALQAVGFDLPIRLLGEKSESL-----------VSEVDQCLGR-LEHVED-NAAFNFVNA 1244

Query: 726  LLQLRWCTIVGFPISW 741
            L+ L W   +    SW
Sbjct: 1245 LVDLLWAFELRATASW 1260



 Score = 42.7 bits (99), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 105/548 (19%), Positives = 189/548 (34%), Gaps = 61/548 (11%)

Query: 154 IYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQ-KNLSAV 212
           I   + VYN+ +G  A+  +    N   +LM  R    + V++  L+   V     +S +
Sbjct: 260 IADTVQVYNAMMGVYARNGNFEKVNEMFNLMRERGCEPDIVSFNTLINAKVKSCATVSGL 319

Query: 213 HEIWEDYIKHYSL--SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEG 270
                D +  + L   I +    + + +R  +LK A     HM                 
Sbjct: 320 AIELLDEVGKFGLRPDIITYNTLISACSRESNLKEAIGVFSHM----------------- 362

Query: 271 RLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHT 330
              S+R    +            W+++ +I   GR   +  AE L  +++S G  P + T
Sbjct: 363 --ESNRCQPDL------------WTYNAMISVYGRCGFALKAEHLFEKLKSNGFSPDAVT 408

Query: 331 YDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALL-DQI 389
           Y+  + A   +       ++ + M +      + T  T+     K    D A  L  D  
Sbjct: 409 YNSLLYAFSKEGNTEKVRDISEEMVKMGFGKDEMTYNTIIHMYGKHGRHDEALRLYRDMK 468

Query: 390 SRCTNPKP--FSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNV---- 442
           S   NP    ++  +       K E A K+ ++M    ++P + TY  L   +  V    
Sbjct: 469 SSGRNPDAVTYTVLIDLLGKASKIEEASKVMSEMLDAGVKPTLHTYSALICAYAKVGRRV 528

Query: 443 ------NAPYEEG------------NMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLL 484
                 N   E G            + F + +  K+  A+  +M            + +L
Sbjct: 529 EAEETFNRMRESGIKADHLAYSVMLDFFLRFNEIKKAAALYQEMIEAGFTPDTGLYEVML 588

Query: 485 KALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNA 544
            AL  E M  ++I+        LG+   + +   LV+        ++ K   + G   + 
Sbjct: 589 PALVRENM-GDVIERVVQDTKELGSMNPHDISSVLVKGGCYDHGAKMLKVAISNGYELDR 647

Query: 545 ATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDL 604
             +  ++   S    +  A  LV            M   ALI IL   G  D AL     
Sbjct: 648 EIFLSIMSSYSSSARYSEACELVEFFREHAPDDIQMITEALIIILCKAGKLDAALEEYRS 707

Query: 605 VSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGF 664
               G      +Y +++ +  +  + D+   +   M  N V+P       + S Y   GF
Sbjct: 708 RGGLGTFRSCTMYESLIHECTKSEQFDIASQLFSDMRFNGVEPSECLYQSMVSVYCRIGF 767

Query: 665 HNSAMEAL 672
             +A   L
Sbjct: 768 PETAQHLL 775


>gi|298707411|emb|CBJ30040.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 564

 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/315 (22%), Positives = 132/315 (41%), Gaps = 20/315 (6%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +FS  + ACG       A  L+ QM   G+ P+  T+   + A       R  + +L+ M
Sbjct: 149 TFSSAVAACGNAGQWERALGLLDQMAEEGVPPNEFTFSAAVSACGKAGQWRPALTILRRM 208

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKP 411
           +  N  P   T       C KA E  LA+ LL ++       N   F++ ++A     + 
Sbjct: 209 RAANCPPNVQTYTAAIDACGKAGEWRLAQGLLAEMREKGVAPNVITFNSAISALGNGGQW 268

Query: 412 ERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           + A+ +   M    ++P++ +Y    +  G+ N                R  A+   M  
Sbjct: 269 QEALNLLRDMPSMGVQPNMWSYTAAVTACGDNN-------------RWARALAVHEQMRS 315

Query: 471 NNIQHSHISMKNLLKAL---GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHR 527
             I+   +S    + A    GA  M   L+    D   P    +++T + +  + Q+  R
Sbjct: 316 RGIRGDEVSFTAAIDACAQGGAWEMALALLDEMRDEGIPPTVRSFSTAISACGKGQQWGR 375

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A+ + ++M+  G+ PN  ++N  ID C     +++A +L+  M   G    T+TY A+I 
Sbjct: 376 AVALLREMEEVGVSPNEVSFNAAIDACGRAGQWRAALSLLDKMSSAGVPRGTITYNAVIA 435

Query: 588 ILLDYGDFDEALNLL 602
                 ++  A+++L
Sbjct: 436 ACGKGKEWARAVSVL 450



 Score = 87.4 bits (215), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 75/324 (23%), Positives = 137/324 (42%), Gaps = 23/324 (7%)

Query: 314 QLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVEC 373
           +L+ +M ++GL P+  T+   + A  +       + +L  M +  + P + T +     C
Sbjct: 133 RLLGEMAAVGLSPNVTTFSSAVAACGNAGQWERALGLLDQMAEEGVPPNEFTFSAAVSAC 192

Query: 374 SKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDKPERAIKIFAKMRQK-LRPD 428
            KA +   A  +L ++ R  N  P    ++A + AC    +   A  + A+MR+K + P+
Sbjct: 193 GKAGQWRPALTILRRM-RAANCPPNVQTYTAAIDACGKAGEWRLAQGLLAEMREKGVAPN 251

Query: 429 IRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALG 488
           + T+    S  GN     E  N+               DM    +Q +  S    + A G
Sbjct: 252 VITFNSAISALGNGGQWQEALNLLR-------------DMPSMGVQPNMWSYTAAVTACG 298

Query: 489 AEG-MIREL-IQYFCDSKTPLGTP-TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAA 545
                 R L +     S+   G   ++   + +  +      A+ +  +M+  GIPP   
Sbjct: 299 DNNRWARALAVHEQMRSRGIRGDEVSFTAAIDACAQGGAWEMALALLDEMRDEGIPPTVR 358

Query: 546 TYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLV 605
           +++  I  C   + +  A AL+  M   G  P  +++ A I      G +  AL+LLD +
Sbjct: 359 SFSTAISACGKGQQWGRAVALLREMEEVGVSPNEVSFNAAIDACGRAGQWRAALSLLDKM 418

Query: 606 SLEGIPHDVLLYNTILKKACEKGR 629
           S  G+P   + YN ++  AC KG+
Sbjct: 419 SSAGVPRGTITYNAVI-AACGKGK 441



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 79/360 (21%), Positives = 145/360 (40%), Gaps = 22/360 (6%)

Query: 329 HTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ 388
           +TY   + A+         + +L +M+   + P           C+K  + + A ALLDQ
Sbjct: 70  YTYSVLMSAVARSGRWEEVLVLLDVMRSEGVAPDHFAFGAAVNACAKGGQWERAVALLDQ 129

Query: 389 -----------ISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFS 437
                      +    N   FS+ +AAC    + ERA+ +  +M ++  P     E  FS
Sbjct: 130 RALRLLGEMAAVGLSPNVTTFSSAVAACGNAGQWERALGLLDQMAEEGVP---PNEFTFS 186

Query: 438 LFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELI 497
               V+A  + G     +   +R+ A        N+Q    ++    KA G   + + L+
Sbjct: 187 --AAVSACGKAGQWRPALTILRRMRAANCP---PNVQTYTAAIDACGKA-GEWRLAQGLL 240

Query: 498 QYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSII 557
               +        T+N+ + +L    +   A+ + + M + G+ PN  +Y   +  C   
Sbjct: 241 AEMREKGVAPNVITFNSAISALGNGGQWQEALNLLRDMPSMGVQPNMWSYTAAVTACGDN 300

Query: 558 RCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLY 617
             +  A A+   M   G     +++TA I      G ++ AL LLD +  EGIP  V  +
Sbjct: 301 NRWARALAVHEQMRSRGIRGDEVSFTAAIDACAQGGAWEMALALLDEMRDEGIPPTVRSF 360

Query: 618 NTILKKACEKG-RIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
           +T +  AC KG +      ++ +M +  V P+  + +         G   +A+  L  +S
Sbjct: 361 STAI-SACGKGQQWGRAVALLREMEEVGVSPNEVSFNAAIDACGRAGQWRAALSLLDKMS 419



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 75/354 (21%), Positives = 137/354 (38%), Gaps = 34/354 (9%)

Query: 112 MMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLI-----YFLGE--RYGIYPILPVYNSF 164
           +M  + +  ++  +   + A  KGG  E A  L+       LGE    G+ P +  ++S 
Sbjct: 94  VMRSEGVAPDHFAFGAAVNACAKGGQWERAVALLDQRALRLLGEMAAVGLSPNVTTFSSA 153

Query: 165 LGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELL----KLAVWQKNLSAVHEIWE--- 217
           + AC        A   LD M    V  NE T++  +    K   W+  L+ +  +     
Sbjct: 154 VAACGNAGQWERALGLLDQMAEEGVPPNEFTFSAAVSACGKAGQWRPALTILRRMRAANC 213

Query: 218 -DYIKHYSLSIFSLRKFV-WSFTR-----LRDLKSAYETLQHMVALAMMGKLYINRTSEG 270
              ++ Y+ +I +  K   W   +     +R+   A   +    A++ +G     + +  
Sbjct: 214 PPNVQTYTAAIDACGKAGEWRLAQGLLAEMREKGVAPNVITFNSAISALGNGGQWQEALN 273

Query: 271 RLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHT 330
            LR    D+P  +   P M    WS++  + ACG       A  +  QM+S G++    +
Sbjct: 274 LLR----DMP-SMGVQPNM----WSYTAAVTACGDNNRWARALAVHEQMRSRGIRGDEVS 324

Query: 331 YDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALL---D 387
           +   I A          + +L  M+   + P   + +T    C K  +   A ALL   +
Sbjct: 325 FTAAIDACAQGGAWEMALALLDEMRDEGIPPTVRSFSTAISACGKGQQWGRAVALLREME 384

Query: 388 QISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRP-DIRTYELLFSLFG 440
           ++    N   F+A + AC    +   A+ +  KM     P    TY  + +  G
Sbjct: 385 EVGVSPNEVSFNAAIDACGRAGQWRAALSLLDKMSSAGVPRGTITYNAVIAACG 438



 Score = 48.5 bits (114), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 83/367 (22%), Positives = 135/367 (36%), Gaps = 58/367 (15%)

Query: 90  FFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLG 149
           F   ++ C ++      +   R M       N + Y   + A  K G    A  L+  + 
Sbjct: 185 FSAAVSACGKAGQWRPALTILRRMRAANCPPNVQTYTAAIDACGKAGEWRLAQGLLAEMR 244

Query: 150 ERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAV----W 205
           E+ G+ P +  +NS + A         A   L  M S  V  N  +YT  +        W
Sbjct: 245 EK-GVAPNVITFNSAISALGNGGQWQEALNLLRDMPSMGVQPNMWSYTAAVTACGDNNRW 303

Query: 206 QKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDL---KSAYETLQHMVALAMMGKL 262
            + L AVHE          +    +R    SFT   D      A+E     +ALA++ ++
Sbjct: 304 ARAL-AVHE---------QMRSRGIRGDEVSFTAAIDACAQGGAWE-----MALALLDEM 348

Query: 263 YINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSL 322
                          D  IP    P ++    SFS  I ACG+ Q  G A  L+ +M+ +
Sbjct: 349 R--------------DEGIP----PTVR----SFSTAISACGKGQQWGRAVALLREMEEV 386

Query: 323 GLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLA 382
           G+ P+  +++  I A       R  + +L  M    +     T   +   C K  E   A
Sbjct: 387 GVSPNEVSFNAAIDACGRAGQWRAALSLLDKMSSAGVPRGTITYNAVIAACGKGKEWARA 446

Query: 383 -----EALLDQISRCTNPKP--------FSAFLAACDTMDKPERAIKIFAKMRQKLRPDI 429
                E L  Q     +  P        +SA + AC    + E AI +   +R+  R ++
Sbjct: 447 VSVLREMLAGQAKTDGDMAPVPMADVVSYSAAIDACVRAGEWEEAISLVELLRRDRRLNV 506

Query: 430 RTYELLF 436
            T  + +
Sbjct: 507 GTEGVRY 513



 Score = 44.3 bits (103), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 5/89 (5%)

Query: 593 GDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTC 652
           G + EAL   +L   +G+  DV  Y+ ++      GR + +  +++ M    V PD    
Sbjct: 48  GQWKEALTAANLAREDGVVFDVYTYSVLMSAVARSGRWEEVLVLLDVMRSEGVAPD---- 103

Query: 653 HFVFSGYVN-CGFHNSAMEALQVLSMRML 680
           HF F   VN C        A+ +L  R L
Sbjct: 104 HFAFGAAVNACAKGGQWERAVALLDQRAL 132


>gi|224133106|ref|XP_002327962.1| predicted protein [Populus trichocarpa]
 gi|222837371|gb|EEE75750.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 82/365 (22%), Positives = 147/365 (40%), Gaps = 20/365 (5%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           + F+ +I+   R Q    A  ++ ++  LG +P + T+   I  +  +      ME    
Sbjct: 120 FHFNILINCFSRLQRVDFAFSVLGKIIKLGFEPDAVTFSSLINGLCFEDKFARAMEFFDE 179

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPE- 412
           M  +  +P   T  T+     K  +  +A  LL ++ +         +    D + K   
Sbjct: 180 MVASGYQPNLHTYNTIIKGFCKIGKTTVAVGLLKKMDKAGGRPDIVIYNTIIDGLCKDRL 239

Query: 413 --RAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
              A+ IF++++ K +RPD+ TY +L     N +   E   +F+++ S            
Sbjct: 240 VSEALDIFSEIKGKGVRPDVFTYSILMHGLCNSDQKEEASALFNEMMSL----------- 288

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESH 526
             NI    ++   L+  L  EGM+ E   +I+   +        TYN++++      +  
Sbjct: 289 --NIMPDVVTFNILVDKLCKEGMLSEAQGIIKIMIEKGVEPNYATYNSLMNGYCLQNKVF 346

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
            A  +F  M T G  PN  +YNI+I+     +    A  L   M   G  P T  Y  LI
Sbjct: 347 EARMVFDAMITKGCMPNVVSYNILINGYCKAQRIDEARELFDEMSFRGLIPNTFNYNTLI 406

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
             L   G   EA  L   +  +G   D++    +L   C+ G +D    +   M  + ++
Sbjct: 407 SGLCQAGRHCEARELFKDMQAQGCSPDLVTCTILLDSLCKLGYLDNALRLFRAMQDSCLK 466

Query: 647 PDPST 651
           P+  T
Sbjct: 467 PNLVT 471



 Score = 66.2 bits (160), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 54/230 (23%), Positives = 105/230 (45%), Gaps = 8/230 (3%)

Query: 450 NMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGT 509
           N FS++       ++   + +   +   ++  +L+  L  E      +++F +       
Sbjct: 127 NCFSRLQRVDFAFSVLGKIIKLGFEPDAVTFSSLINGLCFEDKFARAMEFFDEMVASGYQ 186

Query: 510 P---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASAL 566
           P   TYNT++    +  ++  A+ + K+M   G  P+   YN +ID     R    A  +
Sbjct: 187 PNLHTYNTIIKGFCKIGKTTVAVGLLKKMDKAGGRPDIVIYNTIIDGLCKDRLVSEALDI 246

Query: 567 VSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL-DLVSLEGIPHDVLLYNTILKKAC 625
            S +   G  P   TY+ L+  L +    +EA  L  +++SL  +P DV+ +N ++ K C
Sbjct: 247 FSEIKGKGVRPDVFTYSILMHGLCNSDQKEEASALFNEMMSLNIMP-DVVTFNILVDKLC 305

Query: 626 EKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
           ++G +   + II+ M +  V+P+ +T + + +GY      N   EA  V 
Sbjct: 306 KEGMLSEAQGIIKIMIEKGVEPNYATYNSLMNGYC---LQNKVFEARMVF 352



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 72/137 (52%)

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           ++ +L +LV  +     + + K+++   I  +   +NI+I+C S ++    A +++  ++
Sbjct: 87  FDKLLSALVRIKHYGTVLSLSKRIELLRIERDVFHFNILINCFSRLQRVDFAFSVLGKII 146

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
           + GF P  +T+++LI  L     F  A+   D +   G   ++  YNTI+K  C+ G+  
Sbjct: 147 KLGFEPDAVTFSSLINGLCFEDKFARAMEFFDEMVASGYQPNLHTYNTIIKGFCKIGKTT 206

Query: 632 VIEFIIEQMHQNKVQPD 648
           V   ++++M +   +PD
Sbjct: 207 VAVGLLKKMDKAGGRPD 223



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 62/150 (41%)

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           +N +++     Q    A  +  ++   G  P+A T++ +I+       F  A      MV
Sbjct: 122 FNILINCFSRLQRVDFAFSVLGKIIKLGFEPDAVTFSSLINGLCFEDKFARAMEFFDEMV 181

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
             G+ P   TY  +IK     G    A+ LL  +   G   D+++YNTI+   C+   + 
Sbjct: 182 ASGYQPNLHTYNTIIKGFCKIGKTTVAVGLLKKMDKAGGRPDIVIYNTIIDGLCKDRLVS 241

Query: 632 VIEFIIEQMHQNKVQPDPSTCHFVFSGYVN 661
               I  ++    V+PD  T   +  G  N
Sbjct: 242 EALDIFSEIKGKGVRPDVFTYSILMHGLCN 271


>gi|357449339|ref|XP_003594946.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124359380|gb|ABN05846.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355483994|gb|AES65197.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 849

 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 88/389 (22%), Positives = 164/389 (42%), Gaps = 22/389 (5%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ VI+A G+  ++  A ++  QM+ LG  P+  TY+  +  +       + +++L  M
Sbjct: 415 TYTTVINAYGKAGDADKALEVFGQMKELGCVPNVCTYNNVLVLLGKRSRSEDMIKILCDM 474

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRC---TNPKPFSAFLAACDTMDKP 411
           + N   P   T  T+   C +  +      +L ++  C    + + F+  ++A       
Sbjct: 475 KLNGCPPDRITWNTMLAVCGEKGKQKFVSQVLREMKNCGFEPDKETFNTLISAYGRCGSE 534

Query: 412 ERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
               K++ +M      P I TY  L      +NA    GN        K   ++ +DM +
Sbjct: 535 VDVAKMYGEMVAAGFTPCITTYNAL------LNALARRGNW-------KAAESVVLDMRK 581

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAME 530
              + +  S   LL      G +R L +   +       P++  +L +LV      R ++
Sbjct: 582 KGFKPNETSYSLLLHCYSKAGNVRGLEKVEMEIYDGHVFPSW-MLLRTLVLTNYKCRQLK 640

Query: 531 ----IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
                F Q++  G   +    N M+      +  + A  ++ ++   G  P  +TY +LI
Sbjct: 641 GMERAFHQLQNNGYKLDMVVINSMLSMFVRNQKLEKAHEMLDVIHVSGLQPNLVTYNSLI 700

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
            +    GD  +A  +L  +   GI  DV+ YNT++K  C+KG +     I+ +M  N VQ
Sbjct: 701 DLYARVGDCWKAEEMLKDIQNSGISPDVVSYNTVIKGFCKKGLVQEAIRILSEMTANGVQ 760

Query: 647 PDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
           P P T +   S Y   G    A E ++ +
Sbjct: 761 PCPITFNTFMSCYAGNGLFAEADEVIRYM 789



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 80/352 (22%), Positives = 143/352 (40%), Gaps = 62/352 (17%)

Query: 358 NLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTM-------DK 410
           N+K  D ++  +     +  +  +A  L D I      + +S  + AC T+        K
Sbjct: 197 NMKVDDQSVEFMVKMLGRESQYSIASKLFDIIP----VEEYSLDVKACTTVLHAYARTGK 252

Query: 411 PERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
            +RAI+IF KM++  L P + TY ++  ++G +   +   +M  ++    R   +E D  
Sbjct: 253 YKRAIEIFEKMKETGLDPTLVTYNVMLDVYGKMGRAW---SMILELLDEMRSKGLEFD-- 307

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKT---PLGTPTYNTVLHSLVEAQESH 526
                    +   ++ A G EG++ E  ++F D K      GT TYN++L    +A    
Sbjct: 308 -------EFTCTTVISACGREGILDEARRFFDDLKLNGYKPGTATYNSMLQVFGKAGVYT 360

Query: 527 RAMEIFKQMK-----------------------------------TCGIPPNAATYNIMI 551
            A+ I K+M+                                   + G+ PNA TY  +I
Sbjct: 361 EALNILKEMEDNNCEPDAITYNELVAAYVRAGFHDEGAAVIDTMASKGVMPNAITYTTVI 420

Query: 552 DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIP 611
           +          A  +   M   G  P   TY  ++ +L      ++ + +L  + L G P
Sbjct: 421 NAYGKAGDADKALEVFGQMKELGCVPNVCTYNNVLVLLGKRSRSEDMIKILCDMKLNGCP 480

Query: 612 HDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
            D + +NT+L    EKG+   +  ++ +M     +PD  T + + S Y  CG
Sbjct: 481 PDRITWNTMLAVCGEKGKQKFVSQVLREMKNCGFEPDKETFNTLISAYGRCG 532



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 89/448 (19%), Positives = 172/448 (38%), Gaps = 76/448 (16%)

Query: 220 IKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHM-------------VALAMMGKLYINR 266
           ++ YSL + +    + ++ R    K A E  + M             V L + GK+    
Sbjct: 230 VEEYSLDVKACTTVLHAYARTGKYKRAIEIFEKMKETGLDPTLVTYNVMLDVYGKM---- 285

Query: 267 TSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQP 326
              GR  S  L++   + +   ++   ++ + VI ACGR      A +    ++  G +P
Sbjct: 286 ---GRAWSMILELLDEMRS-KGLEFDEFTCTTVISACGREGILDEARRFFDDLKLNGYKP 341

Query: 327 SSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALL 386
            + TY+  ++           + +LK M+ NN +P   T   L     +A   D   A++
Sbjct: 342 GTATYNSMLQVFGKAGVYTEALNILKEMEDNNCEPDAITYNELVAAYVRAGFHDEGAAVI 401

Query: 387 DQISR---CTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNV 442
           D ++      N   ++  + A       ++A+++F +M++    P++ TY          
Sbjct: 402 DTMASKGVMPNAITYTTVINAYGKAGDADKALEVFGQMKELGCVPNVCTY---------- 451

Query: 443 NAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCD 502
                                       NN+          L  LG      ++I+  CD
Sbjct: 452 ----------------------------NNV----------LVLLGKRSRSEDMIKILCD 473

Query: 503 SK---TPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRC 559
            K    P    T+NT+L    E  +     ++ ++MK CG  P+  T+N +I        
Sbjct: 474 MKLNGCPPDRITWNTMLAVCGEKGKQKFVSQVLREMKNCGFEPDKETFNTLISAYGRCGS 533

Query: 560 FKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNT 619
               + +   MV  GF P   TY AL+  L   G++  A +++  +  +G   +   Y+ 
Sbjct: 534 EVDVAKMYGEMVAAGFTPCITTYNALLNALARRGNWKAAESVVLDMRKKGFKPNETSYSL 593

Query: 620 ILKKACEKGRIDVIEFIIEQMHQNKVQP 647
           +L    + G +  +E +  +++   V P
Sbjct: 594 LLHCYSKAGNVRGLEKVEMEIYDGHVFP 621



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 64/280 (22%), Positives = 108/280 (38%), Gaps = 45/280 (16%)

Query: 464 IEMDMARNNIQHSHISMKNLLKALGAEG---MIRELIQYFCDSKTPLGTPTYNTVLHSLV 520
           + ++    N++    S++ ++K LG E    +  +L       +  L      TVLH+  
Sbjct: 189 VWLNFGSENMKVDDQSVEFMVKMLGRESQYSIASKLFDIIPVEEYSLDVKACTTVLHAYA 248

Query: 521 EAQESHRAMEIFKQMKTCGIPPNAATYNIMID---------------------------- 552
              +  RA+EIF++MK  G+ P   TYN+M+D                            
Sbjct: 249 RTGKYKRAIEIFEKMKETGLDPTLVTYNVMLDVYGKMGRAWSMILELLDEMRSKGLEFDE 308

Query: 553 --CCSIIRC------FKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDL 604
             C ++I           A      +  +G+ P T TY +++++    G + EALN+L  
Sbjct: 309 FTCTTVISACGREGILDEARRFFDDLKLNGYKPGTATYNSMLQVFGKAGVYTEALNILKE 368

Query: 605 VSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGF 664
           +       D + YN ++      G  D    +I+ M    V P+  T   V + Y   G 
Sbjct: 369 MEDNNCEPDAITYNELVAAYVRAGFHDEGAAVIDTMASKGVMPNAITYTTVINAYGKAGD 428

Query: 665 HNSAMEALQVLSMRMLCEEVST------LEEKRSDFEDLI 698
            + A+E    +        V T      L  KRS  ED+I
Sbjct: 429 ADKALEVFGQMKELGCVPNVCTYNNVLVLLGKRSRSEDMI 468



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 100/541 (18%), Positives = 194/541 (35%), Gaps = 106/541 (19%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y  M+Q   K G   EA N++  + E     P    YN  + A  +          +D M
Sbjct: 346 YNSMLQVFGKAGVYTEALNILKEM-EDNNCEPDAITYNELVAAYVRAGFHDEGAAVIDTM 404

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLK 244
            S+ V  N +TYT ++       +     E+                     F ++++L 
Sbjct: 405 ASKGVMPNAITYTTVINAYGKAGDADKALEV---------------------FGQMKELG 443

Query: 245 SAYETLQHMVALAMMGKLYINRTSEGRLRSS---RLDIPIPLNALPVMKVLRWSFSDVIH 301
                  +   L ++GK         R RS    ++   + LN  P  ++   +++ ++ 
Sbjct: 444 CVPNVCTYNNVLVLLGK---------RSRSEDMIKILCDMKLNGCPPDRI---TWNTMLA 491

Query: 302 ACGRTQNSGLAEQLMLQMQSLGLQPSSHTYD-------------------------GFIR 336
            CG         Q++ +M++ G +P   T++                         GF  
Sbjct: 492 VCGEKGKQKFVSQVLREMKNCGFEPDKETFNTLISAYGRCGSEVDVAKMYGEMVAAGFTP 551

Query: 337 AIVSDRGLRNGM----------EVLKIMQQNNLKPQDSTIATLSVECSKA--------LE 378
            I +   L N +           V+  M++   KP +++ + L    SKA        +E
Sbjct: 552 CITTYNALLNALARRGNWKAAESVVLDMRKKGFKPNETSYSLLLHCYSKAGNVRGLEKVE 611

Query: 379 LDLAEA------LLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTY 432
           +++ +       +L +    TN K        C  +   ERA         KL  D+   
Sbjct: 612 MEIYDGHVFPSWMLLRTLVLTNYK--------CRQLKGMERAFHQLQNNGYKL--DMVVI 661

Query: 433 ELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGM 492
             + S+F   N   E+ +        + ++ I +   + N+  ++ S+ +L   +G    
Sbjct: 662 NSMLSMFVR-NQKLEKAH--------EMLDVIHVSGLQPNLV-TYNSLIDLYARVGDCWK 711

Query: 493 IRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID 552
             E+++   +S       +YNTV+    +      A+ I  +M   G+ P   T+N  + 
Sbjct: 712 AEEMLKDIQNSGISPDVVSYNTVIKGFCKKGLVQEAIRILSEMTANGVQPCPITFNTFMS 771

Query: 553 CCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPH 612
           C +    F  A  ++  M+  G  P  +TY  +I   +      EA++ +  +    I  
Sbjct: 772 CYAGNGLFAEADEVIRYMIEHGCMPNELTYKIVIDGYIKAKKHKEAMDFVSKIKEIDISF 831

Query: 613 D 613
           D
Sbjct: 832 D 832


>gi|8778650|gb|AAF79658.1|AC025416_32 F5O11.4 [Arabidopsis thaliana]
          Length = 975

 Score = 88.2 bits (217), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 92/389 (23%), Positives = 170/389 (43%), Gaps = 24/389 (6%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           ++ S +I+   R +   LA   M ++  LG +P++ T+   I  +  +  +   +E++  
Sbjct: 222 YTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDR 281

Query: 354 MQQNNLKPQDSTIATL-SVECSKALELDLAEALLDQISR--C-TNPKPFSAFLAACDTMD 409
           M +   KP   TI TL +  C    E + A  L+D++    C  N   +   L       
Sbjct: 282 MVEMGHKPDLITINTLVNGLCLSGKEAE-AMLLIDKMVEYGCQPNAVTYGPVLNVMCKSG 340

Query: 410 KPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
           +   A+++  KM ++ ++ D   Y ++        +     N+F         N +EM  
Sbjct: 341 QTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLF---------NEMEMKG 391

Query: 469 ARNNIQHSHISMKNLLKAL----GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQE 524
              NI   +I +     A     GA+ ++R++I+     K      T++ ++ S V+  +
Sbjct: 392 ITTNIITYNILIGGFCNAGRWDDGAK-LLRDMIK----RKINPNVVTFSVLIDSFVKEGK 446

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
              A E+ K+M   GI P+  TY  +ID          A+ +V +MV  G  P   T+  
Sbjct: 447 LREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNI 506

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
           LI         D+ L L   +SL G+  D + YNT+++  CE G+++V + + ++M   K
Sbjct: 507 LINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRK 566

Query: 645 VQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           V P+  T   +  G  + G    A+E  +
Sbjct: 567 VPPNIVTYKILLDGLCDNGESEKALEIFE 595



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 81/409 (19%), Positives = 170/409 (41%), Gaps = 33/409 (8%)

Query: 312 AEQLML--QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL 369
           AE ++L  +M   G QP++ TY   +  +         ME+L+ M++ N+K      + +
Sbjct: 308 AEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSII 367

Query: 370 SVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKPERAIKIFAKM-RQKL 425
                K   LD A  L +++      TN   ++  +       + +   K+   M ++K+
Sbjct: 368 IDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKI 427

Query: 426 RPDIRTYELLFSLFGNVNAPYEEGNMFSQV-------DSAKRINAIEMDMARNNIQHSHI 478
            P++ T+ +L   F       E   +  ++       D+    + I+     N++  ++ 
Sbjct: 428 NPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKAN- 486

Query: 479 SMKNLLKALGAEGMIRE---LIQYFCDSK----------------TPLGTPTYNTVLHSL 519
            M +L+ + G +  IR    LI  +C +                     T TYNT++   
Sbjct: 487 QMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGF 546

Query: 520 VEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQT 579
            E  + + A E+F++M +  +PPN  TY I++D        + A  +   + +       
Sbjct: 547 CELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDI 606

Query: 580 MTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQ 639
             Y  +I  + +    D+A +L   + L+G+   V  YN ++   C+KG +   E +  +
Sbjct: 607 GIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRK 666

Query: 640 MHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLE 688
           M ++   PD  T + +   ++  G    +++ ++ L       + ST++
Sbjct: 667 MEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFSVDASTIK 715



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 83/372 (22%), Positives = 148/372 (39%), Gaps = 37/372 (9%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A  L  +M+  G+  +  TY+  I    +     +G ++L+ M +  + P   T + L  
Sbjct: 380 AFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLID 439

Query: 372 ECSKALELDLAEAL-LDQISRCTNPKPF---SAFLAAC--DTMDKPERAIKIFAKMRQKL 425
              K  +L  AE L  + I R   P      S     C  + +DK  + + +   + +  
Sbjct: 440 SFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLM--VSKGC 497

Query: 426 RPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLK 485
            P+IRT+ +L + +   N   +   +F +             M+   +    ++   L++
Sbjct: 498 DPNIRTFNILINGYCKANRIDDGLELFRK-------------MSLRGVVADTVTYNTLIQ 544

Query: 486 A---LGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPP 542
               LG   + +EL Q     K P    TY  +L  L +  ES +A+EIF++++   +  
Sbjct: 545 GFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMEL 604

Query: 543 NAATYNIMI-DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNL 601
           +   YNI+I   C+  +   +     S+ ++ G  P   TY  +I  L   G   EA  L
Sbjct: 605 DIGIYNIIIHGMCNASKVDDAWDLFCSLPLK-GVKPGVKTYNIMIGGLCKKGPLSEAELL 663

Query: 602 LDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFV------ 655
              +  +G   D   YN +++     G       +IE++ +     D ST   V      
Sbjct: 664 FRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFSVDASTIKMVIDMLSD 723

Query: 656 -----FSGYVNC 662
                FS Y NC
Sbjct: 724 DKANYFSKYHNC 735



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 103/499 (20%), Positives = 199/499 (39%), Gaps = 75/499 (15%)

Query: 59  IVDALC-RGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKE 117
           +V+ LC  G+ + A  L+  +        A  +  +LN   +S      ME  R MEE+ 
Sbjct: 297 LVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERN 356

Query: 118 IGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHA 177
           I L+   Y +++  LCK G L+ A NL   + E  GI   +  YN  +G           
Sbjct: 357 IKLDAVKYSIIIDGLCKHGSLDNAFNLFNEM-EMKGITTNIITYNILIGGFCNAGRWDDG 415

Query: 178 NLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSF 237
              L  M  R +  N VT++ L+   V +  L    E+ ++ I H  ++  ++     ++
Sbjct: 416 AKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMI-HRGIAPDTI-----TY 469

Query: 238 TRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFS 297
           T L D    +    H+     M  L +++  +  +R                     +F+
Sbjct: 470 TSLID---GFCKENHLDKANQMVDLMVSKGCDPNIR---------------------TFN 505

Query: 298 DVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQN 357
            +I+   +        +L  +M   G+   + TY+  I+       L    E+ + M   
Sbjct: 506 ILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSR 565

Query: 358 NLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKI 417
            + P    I T  +             LLD +               CD   + E+A++I
Sbjct: 566 KVPPN---IVTYKI-------------LLDGL---------------CDN-GESEKALEI 593

Query: 418 FAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHS 476
           F K+ + K+  DI  Y ++     N +   +  ++F  +     +  ++  +   NI   
Sbjct: 594 FEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLP----LKGVKPGVKTYNIMIG 649

Query: 477 HISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMK 536
            +  K  L    AE + R++ +   D   P G  TYN ++ + +   ++ +++++ +++K
Sbjct: 650 GLCKKGPLSE--AELLFRKMEE---DGHAPDGW-TYNILIRAHLGDGDATKSVKLIEELK 703

Query: 537 TCGIPPNAATYNIMIDCCS 555
            CG   +A+T  ++ID  S
Sbjct: 704 RCGFSVDASTIKMVIDMLS 722



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 95/198 (47%), Gaps = 10/198 (5%)

Query: 484 LKALGAEGMIRELIQYFCDSKTPLGTPT-YNTVLHSLVEAQESHRAMEIFKQMKTCGIPP 542
           +KA  A  + R++I        PL T   ++ +  ++ + ++    + + KQM+  GI  
Sbjct: 165 IKADDAIDLFRDMIH-----SRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAH 219

Query: 543 NAATYNIMIDCCSIIRCFKSASALVSM--MVRDGFYPQTMTYTALIKILLDYGDFDEALN 600
           N  T +IMI+C    RC K   A  +M  +++ G+ P T+T++ LI  L   G   EAL 
Sbjct: 220 NLYTLSIMINC--FCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALE 277

Query: 601 LLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYV 660
           L+D +   G   D++  NT++   C  G+      +I++M +   QP+  T   V +   
Sbjct: 278 LVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMC 337

Query: 661 NCGFHNSAMEALQVLSMR 678
             G    AME L+ +  R
Sbjct: 338 KSGQTALAMELLRKMEER 355


>gi|242054609|ref|XP_002456450.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
 gi|241928425|gb|EES01570.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
          Length = 669

 Score = 88.2 bits (217), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 120/559 (21%), Positives = 223/559 (39%), Gaps = 85/559 (15%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y ++++A+C+    E+A  ++  +  + G  P +  YN  +    +   +  A   L+ +
Sbjct: 181 YTVLLEAMCRNSGFEQAMAVLDEMRAK-GCTPNIVTYNVIINGMCREGRVDDARELLNRL 239

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSL-SIFSLRKFVWSFTRLRDL 243
            S     + V+YT LLK     K    V E++ + ++   + +  +    +  F R   +
Sbjct: 240 PSYGFQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMV 299

Query: 244 KSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHAC 303
           + A + L+ M             T  G   ++ L   I +N+              I   
Sbjct: 300 ERAIQVLEQM-------------TEHGCATNTTL-CNIVINS--------------ICKQ 331

Query: 304 GRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQD 363
           GR  +   A +L+  M S G  P + +Y   ++ +       +  E+L  M +NN  P +
Sbjct: 332 GRVDD---AFKLLNDMGSYGCNPDTISYTTVLKGLCRAERWDDAKELLNEMVRNNCPPNE 388

Query: 364 STIAT-LSVECSKALELDLAEALLDQISR--CT-NPKPFSAFLAACDTMDKPERAIKIFA 419
            T  T + + C K L ++ A  L++Q+S   CT     ++A +         + A+++F 
Sbjct: 389 VTFNTFICILCQKGL-IEQAIMLIEQMSEHGCTVGVVTYNALVNGFCVQGHIDSALELFR 447

Query: 420 KMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHIS 479
            M    +P+  TY  L +   N                A+R++                 
Sbjct: 448 SM--PCKPNTITYTTLLTGLCN----------------AERLD----------------- 472

Query: 480 MKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCG 539
                   GA  ++ E+++  C    P    T+N ++    +      A+E+ +QM   G
Sbjct: 473 --------GAAELVAEMLRGDC----PPNVVTFNVLVSFFCQKGFLEEAIELVEQMMEHG 520

Query: 540 IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEAL 599
             PN  TYN ++D  +     + A  L+  +V  G  P  +T++++I IL      +EA+
Sbjct: 521 CTPNLITYNTLLDGITKDCSSEDALELLHGLVSKGVSPDVITFSSIIGILSKEDRIEEAV 580

Query: 600 NLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
            L  +V   G+    ++YN IL   C++  ID        M  N   P+ ST   +  G 
Sbjct: 581 QLFHVVQDIGMRPKAVVYNKILLGLCKRCEIDNAIDFFAYMVSNGCMPNESTYIILIEGL 640

Query: 660 VNCGFHNSAMEALQVLSMR 678
            + G    A + L VL  R
Sbjct: 641 AHEGLLKEAQDLLSVLCSR 659



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 87/373 (23%), Positives = 149/373 (39%), Gaps = 31/373 (8%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A  L+  M   G QP+  TY   + A+  + G    M VL  M+     P   T   +  
Sbjct: 162 ALSLLDDMLRRGCQPNVVTYTVLLEAMCRNSGFEQAMAVLDEMRAKGCTPNIVTYNVIIN 221

Query: 372 ECSKALELDLAEALLDQI-SRCTNPK--PFSAFLAACDTMDKPERAIKIFAKMRQK-LRP 427
              +   +D A  LL+++ S    P    ++  L       + +   ++FA+M +K   P
Sbjct: 222 GMCREGRVDDARELLNRLPSYGFQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMP 281

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLK-- 485
           +  T+++L   F         G M  +  + + +  +       N    +I + ++ K  
Sbjct: 282 NEVTFDMLIRFFC-------RGGMVER--AIQVLEQMTEHGCATNTTLCNIVINSICKQG 332

Query: 486 -ALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNA 544
               A  ++ ++  Y C+      T +Y TVL  L  A+    A E+  +M     PPN 
Sbjct: 333 RVDDAFKLLNDMGSYGCNPD----TISYTTVLKGLCRAERWDDAKELLNEMVRNNCPPNE 388

Query: 545 ATYNIMIDCCSIIRCFKS----ASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALN 600
            T+N  I     I C K     A  L+  M   G     +TY AL+      G  D AL 
Sbjct: 389 VTFNTFI----CILCQKGLIEQAIMLIEQMSEHGCTVGVVTYNALVNGFCVQGHIDSALE 444

Query: 601 LLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYV 660
           L    S+   P + + Y T+L   C   R+D    ++ +M +    P+  T + + S + 
Sbjct: 445 LFR--SMPCKP-NTITYTTLLTGLCNAERLDGAAELVAEMLRGDCPPNVVTFNVLVSFFC 501

Query: 661 NCGFHNSAMEALQ 673
             GF   A+E ++
Sbjct: 502 QKGFLEEAIELVE 514



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 72/166 (43%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TY  ++  L +      A+ +   M   G  PN  TY ++++       F+ A A++  M
Sbjct: 145 TYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCRNSGFEQAMAVLDEM 204

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
              G  P  +TY  +I  +   G  D+A  LL+ +   G   D + Y T+LK  C   R 
Sbjct: 205 RAKGCTPNIVTYNVIINGMCREGRVDDARELLNRLPSYGFQPDTVSYTTLLKGLCASKRW 264

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
           D +E +  +M +    P+  T   +   +   G    A++ L+ ++
Sbjct: 265 DDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLEQMT 310



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 72/175 (41%), Gaps = 4/175 (2%)

Query: 501 CDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCF 560
           CD + P        ++ +L     +  A  + +  +  G P +   YN ++         
Sbjct: 69  CDGEAP-DVYLCTKLIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHL 127

Query: 561 KSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTI 620
            +A  L+  M      P   TYT LI++L D G   +AL+LLD +   G   +V+ Y  +
Sbjct: 128 DAARRLIGSM---PVAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVL 184

Query: 621 LKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
           L+  C     +    ++++M      P+  T + + +G    G  + A E L  L
Sbjct: 185 LEAMCRNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARELLNRL 239


>gi|302816960|ref|XP_002990157.1| hypothetical protein SELMODRAFT_131102 [Selaginella moellendorffii]
 gi|300142012|gb|EFJ08717.1| hypothetical protein SELMODRAFT_131102 [Selaginella moellendorffii]
          Length = 760

 Score = 88.2 bits (217), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 75/328 (22%), Positives = 132/328 (40%), Gaps = 20/328 (6%)

Query: 353 IMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRC---TNPKPFSAFLAACDTMD 409
           ++QQN     D   +T+     +    D A+ + D+        N   +S+ + A     
Sbjct: 111 VLQQNLRSQWDKVTSTIISSLGRLGRSDWAQLIFDRAVGAGFGNNVFVYSSLICAYGRSG 170

Query: 410 KPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
           K  +A++IF  M+   +P++  Y          NA  +  +      +A RI     +M 
Sbjct: 171 KLAKAVEIFEAMKVVCKPNLVVY----------NAVIDACSKGGDYPTALRIF---REML 217

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSK---TPLGTPTYNTVLHSLVEAQESH 526
              +    I+   L+ A G      E  + F + +         TYNT++ +     + H
Sbjct: 218 EQGMSPDRITFNTLISAAGRANRWEECDRIFAEMEERGIARDDVTYNTLIATYCRGGQMH 277

Query: 527 RAMEIFKQM-KTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
               + + M K+ GI P+  TY+ MID  + +     A AL   M      P  + Y  +
Sbjct: 278 LGAALMETMAKSSGIEPSVITYSTMIDGYAKLGLAHEAIALFQEMRNQNVEPDGICYNTM 337

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           + I    G+FDEA ++   +   G   D++ YN +L    ++G+      ++E+M Q   
Sbjct: 338 VDIHARLGNFDEAHSIRRAMEEAGFAKDIVTYNALLDSYGKQGKFREAMSLLEEMKQRGA 397

Query: 646 QPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
            P+  T   +   Y   GFH  AM   Q
Sbjct: 398 SPNILTYSALIDAYCKHGFHRDAMALFQ 425



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 88/373 (23%), Positives = 158/373 (42%), Gaps = 26/373 (6%)

Query: 297 SDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEV---LKI 353
           S +I + GR   S  A+ +  +    G   +   Y   I A      L   +E+   +K+
Sbjct: 125 STIISSLGRLGRSDWAQLIFDRAVGAGFGNNVFVYSSLICAYGRSGKLAKAVEIFEAMKV 184

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPER 413
           + + NL   ++ I   S        L +   +L+Q     +   F+  ++A    ++ E 
Sbjct: 185 VCKPNLVVYNAVIDACSKGGDYPTALRIFREMLEQ-GMSPDRITFNTLISAAGRANRWEE 243

Query: 414 AIKIFAKMRQK--LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMD-MAR 470
             +IFA+M ++   R D+ TY  L        A Y  G           + A  M+ MA+
Sbjct: 244 CDRIFAEMEERGIARDDV-TYNTLI-------ATYCRGGQM-------HLGAALMETMAK 288

Query: 471 NN-IQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPT---YNTVLHSLVEAQESH 526
           ++ I+ S I+   ++      G+  E I  F + +     P    YNT++          
Sbjct: 289 SSGIEPSVITYSTMIDGYAKLGLAHEAIALFQEMRNQNVEPDGICYNTMVDIHARLGNFD 348

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
            A  I + M+  G   +  TYN ++D       F+ A +L+  M + G  P  +TY+ALI
Sbjct: 349 EAHSIRRAMEEAGFAKDIVTYNALLDSYGKQGKFREAMSLLEEMKQRGASPNILTYSALI 408

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
                +G   +A+ L   V   G+  DV+LY+T++   C+ G  D    ++E+M  N ++
Sbjct: 409 DAYCKHGFHRDAMALFQDVKKAGLQPDVVLYSTLVDGCCKNGSPDEALALLEEMADNGIR 468

Query: 647 PDPSTCHFVFSGY 659
           P+  T + +   Y
Sbjct: 469 PNVITYNSLLDAY 481



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 77/404 (19%), Positives = 158/404 (39%), Gaps = 65/404 (16%)

Query: 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
           R +F+ +I A GR       +++  +M+  G+     TY+                    
Sbjct: 225 RITFNTLISAAGRANRWEECDRIFAEMEERGIARDDVTYN-------------------- 264

Query: 353 IMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTM 408
                          TL     +  ++ L  AL++ +++ +  +P    +S  +     +
Sbjct: 265 ---------------TLIATYCRGGQMHLGAALMETMAKSSGIEPSVITYSTMIDGYAKL 309

Query: 409 DKPERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMD 467
                AI +F +MR Q + PD   Y  +  +   +      GN F +  S +R       
Sbjct: 310 GLAHEAIALFQEMRNQNVEPDGICYNTMVDIHARL------GN-FDEAHSIRRA------ 356

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQE 524
           M         ++   LL + G +G  RE +    + K    +P   TY+ ++ +  +   
Sbjct: 357 MEEAGFAKDIVTYNALLDSYGKQGKFREAMSLLEEMKQRGASPNILTYSALIDAYCKHGF 416

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
              AM +F+ +K  G+ P+   Y+ ++D C        A AL+  M  +G  P  +TY +
Sbjct: 417 HRDAMALFQDVKKAGLQPDVVLYSTLVDGCCKNGSPDEALALLEEMADNGIRPNVITYNS 476

Query: 585 LI-----KILLDYGDFDE-ALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIE 638
           L+     + L+   +F +    LL  V++   P       +++    ++  +     +  
Sbjct: 477 LLDAYGRQCLMVRKNFPKLRFFLLPRVTMLLKPSVDYDQQSLVDPKQKQALVLAAARVFR 536

Query: 639 QMHQNKVQPDPSTCHFVFSGYVNCGF---HNSAMEALQVLSMRM 679
           +M +N V+P+  T   + +   +C      +S +EA++V   R+
Sbjct: 537 EMAKNGVKPNVVTFSSILNACSHCASVEDASSLLEAMRVFDGRV 580


>gi|225442663|ref|XP_002279821.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Vitis vinifera]
          Length = 725

 Score = 88.2 bits (217), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 116/523 (22%), Positives = 217/523 (41%), Gaps = 88/523 (16%)

Query: 198 ELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLK---SAYETLQHMV 254
           E+LKL V  + +  V +I  D   H  +  F      W+  R R+ +   + Y  L H +
Sbjct: 83  EVLKLKVDHRLVREVLKI--DVEIHVKIQFFK-----WAGKR-RNFEHDSTTYMALIHCL 134

Query: 255 ALA-MMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAE 313
             A M+G+++  +T +  +RS+ +  P  L             S+++   G+ +    A 
Sbjct: 135 DEAGMLGEMW--KTIQEMVRSTCVIGPADL-------------SEIVKVLGKAKMVNKAL 179

Query: 314 QLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM-QQNNLKPQDSTIATLSVE 372
            +  Q++    +P+S+TY+  I  ++ +       E+   M  + +  P   T + L   
Sbjct: 180 SIFYQIKGRKCKPTSNTYNSMILMLMQEGHHEKVHELYNEMCNEGDCLPDTVTYSALIAA 239

Query: 373 CSKALELDLAEALLDQISRC---TNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPD 428
             K    D A +L D++         K ++  L     + + E+A+ +  +M++K     
Sbjct: 240 FGKLGRDDSAISLFDEMKENGLHPTAKIYTTILGIYFKLGRVEKALGLVQEMKEKGCALT 299

Query: 429 IRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALG 488
           + TY  L    G      E  ++F             M+M +   +   + + NL+  LG
Sbjct: 300 VYTYTELIKGVGKAGKVEEAYSIF-------------MNMLKEGCKPDVVLINNLINLLG 346

Query: 489 AEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIF---KQMKTCGIPP 542
             G + + I+ F + ++   TP   TYNTV+ +L E++   RA E F   ++MK  G+ P
Sbjct: 347 KAGRLADAIKLFEEMESLQCTPNVVTYNTVIKALFESKA--RASEAFLWYEKMKENGVVP 404

Query: 543 NAATYNIMID--C---------------------------CSIIRC------FKSASALV 567
           ++ TY+I+ID  C                           CS+I        +++A+ L 
Sbjct: 405 SSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFAPCPAAYCSLINALGKAKRYEAANELF 464

Query: 568 SMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEK 627
             +  +  Y     Y  +IK L   G   EA++L + +   G   DV  YN ++      
Sbjct: 465 QELRENCGYSSARVYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNALMSGMVRV 524

Query: 628 GRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAME 670
           G  D    ++  M +N   PD ++ + + +G+   G    A+E
Sbjct: 525 GMTDEAHSLLRTMEENGCTPDLNSHNIILNGFARTGGPKGAIE 567



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 100/492 (20%), Positives = 194/492 (39%), Gaps = 74/492 (15%)

Query: 122 NKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCL 181
           N   L++MQ     G+ E+   L   +       P    Y++ + A  KL     A    
Sbjct: 198 NSMILMLMQE----GHHEKVHELYNEMCNEGDCLPDTVTYSALIAAFGKLGRDDSAISLF 253

Query: 182 DLMDSRMVGKNEVTYTELL----KLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSF 237
           D M    +      YT +L    KL   +K L  V E+ E   K  +L++++  + +   
Sbjct: 254 DEMKENGLHPTAKIYTTILGIYFKLGRVEKALGLVQEMKE---KGCALTVYTYTELIKGV 310

Query: 238 TRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFS 297
            +   ++ AY              +++N   EG     + D+ +               +
Sbjct: 311 GKAGKVEEAYS-------------IFMNMLKEG----CKPDVVL--------------IN 339

Query: 298 DVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVL--KIMQ 355
           ++I+  G+      A +L  +M+SL   P+  TY+  I+A+   +  R     L  + M+
Sbjct: 340 NLINLLGKAGRLADAIKLFEEMESLQCTPNVVTYNTVIKALFESKA-RASEAFLWYEKMK 398

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKPE 412
           +N + P   T + L     K   ++ A  LL+++        P  + + + A     + E
Sbjct: 399 ENGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFAPCPAAYCSLINALGKAKRYE 458

Query: 413 RAIKIFAKMRQKLR-PDIRTYELLFSLFGNVNAPYEEGNMFSQVDS------AKRINAIE 465
            A ++F ++R+       R Y ++    G      E  ++F+++            NA+ 
Sbjct: 459 AANELFQELRENCGYSSARVYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNALM 518

Query: 466 MDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQES 525
             M R  +               A  ++R + +  C   TP    ++N +L+        
Sbjct: 519 SGMVRVGMTDE------------AHSLLRTMEENGC---TP-DLNSHNIILNGFARTGGP 562

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
             A+E+F +MK   I P+  +YN ++ C S    F+ A+ L+  M   GF    +TY+++
Sbjct: 563 KGAIEMFTRMKNSKIKPDVVSYNTVLGCLSRAGMFEEAAKLMKEMNSKGFEYDLITYSSI 622

Query: 586 IKILLDYGDFDE 597
           ++ +   G  DE
Sbjct: 623 LEAV---GKIDE 631



 Score = 42.4 bits (98), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 63/339 (18%), Positives = 128/339 (37%), Gaps = 15/339 (4%)

Query: 315 LMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECS 374
           L+ +M+  G   + +TY   I+ +     +     +   M +   KP    I  L     
Sbjct: 287 LVQEMKEKGCALTVYTYTELIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLINNLINLLG 346

Query: 375 KALELDLAEALLDQIS--RCT-NPKPFSAFLAAC-DTMDKPERAIKIFAKMRQK-LRPDI 429
           KA  L  A  L +++   +CT N   ++  + A  ++  +   A   + KM++  + P  
Sbjct: 347 KAGRLADAIKLFEEMESLQCTPNVVTYNTVIKALFESKARASEAFLWYEKMKENGVVPSS 406

Query: 430 RTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGA 489
            TY +L   F   N   +   +  ++D          +        ++ S+ N L     
Sbjct: 407 FTYSILIDGFCKTNRVEKALLLLEEMD----------EKGFAPCPAAYCSLINALGKAKR 456

Query: 490 EGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNI 549
                EL Q   ++        Y  ++  L +      A+++F +MK  G  P+   YN 
Sbjct: 457 YEAANELFQELRENCGYSSARVYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNA 516

Query: 550 MIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEG 609
           ++     +     A +L+  M  +G  P   ++  ++      G    A+ +   +    
Sbjct: 517 LMSGMVRVGMTDEAHSLLRTMEENGCTPDLNSHNIILNGFARTGGPKGAIEMFTRMKNSK 576

Query: 610 IPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
           I  DV+ YNT+L      G  +    ++++M+    + D
Sbjct: 577 IKPDVVSYNTVLGCLSRAGMFEEAAKLMKEMNSKGFEYD 615


>gi|302759537|ref|XP_002963191.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
 gi|300168459|gb|EFJ35062.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
          Length = 628

 Score = 88.2 bits (217), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 95/429 (22%), Positives = 171/429 (39%), Gaps = 50/429 (11%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           ++++  + A  +     LA +   QMQ  G  P   TY   +R +     L    E+L  
Sbjct: 39  FTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDFTYSIVLRGLCKAGELDKAKELLGQ 98

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR------------------CTNP 395
           ++++ +K    T + +   C KA  +D A  +   +S                   C+  
Sbjct: 99  LRESGVKLNVITYSVVIDGCCKASRVDDALEIFKTMSSGGGCVPDVVTFNSLLKGLCSGE 158

Query: 396 KPFSAFL-------AAC-----------DTMDKPER---AIKIFAKMRQK-LRPDIRTYE 433
           +   AF+       A C           D + K  R   A +++ +M +K   PD+  Y 
Sbjct: 159 RMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAYT 218

Query: 434 LLFSLFGNVNAPYEEGNMFSQ-VDSAKRINAIEMDMARNNI---QHSHISMKNLLKALGA 489
              +     N   E  +   + V    + +A+        +    H+  +   +++ L  
Sbjct: 219 SFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTVIGILCKKGHAEEAQNQMIEHLCR 278

Query: 490 EGMIRELIQYF---CDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCG---IPPN 543
            GM+ E  + F        P     +NT++H++ +++     + +F++MK+      PPN
Sbjct: 279 SGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPN 338

Query: 544 AATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLD 603
             TYNIM+D     +    A  LV+ M   G  P  +TY+AL+  L   G  D A +LL+
Sbjct: 339 LETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLE 398

Query: 604 LVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
            +S EG+  D     +IL    + G++D     +E M      PD  T + +  G    G
Sbjct: 399 EMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGLCKAG 458

Query: 664 FHNSAMEAL 672
             + A+  L
Sbjct: 459 RIDEAITFL 467



 Score = 88.2 bits (217), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 100/470 (21%), Positives = 186/470 (39%), Gaps = 55/470 (11%)

Query: 216 WEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMV----------------ALAMM 259
           W    K Y  S+F+   F+ +  +    + AYE  Q M                  L   
Sbjct: 27  WLGRQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDFTYSIVLRGLCKA 86

Query: 260 GKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQM 319
           G+L   +   G+LR S     + LN +        ++S VI  C +      A ++   M
Sbjct: 87  GELDKAKELLGQLRES----GVKLNVI--------TYSVVIDGCCKASRVDDALEIFKTM 134

Query: 320 QSLG-LQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALE 378
            S G   P   T++  ++ + S   +     + + M +   +P   + +TL     KA  
Sbjct: 135 SSGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGR 194

Query: 379 LDLAEALLDQ-ISRCTNPK--PFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYEL 434
           LD A  L ++ + +   P    +++F+      ++   A     KM  K  + D   +  
Sbjct: 195 LDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFST 254

Query: 435 LFSLFGNVNAPYEEGNMF-------SQVDSAKRINAIEMDMARNN---------IQHSHI 478
           +  +        E  N           +D A      E  ++RN+         + H+  
Sbjct: 255 VIGILCKKGHAEEAQNQMIEHLCRSGMLDEA--CKTFEEMISRNHPPSAELFNTLIHAVC 312

Query: 479 SMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTC 538
             K L   +     ++ + +++C    P    TYN ++ +L +A++   A E+  +M   
Sbjct: 313 KSKRLPDGVLLFQRMKSMKEFYC----PPNLETYNIMVDNLCKAKQLDEAQELVNEMANY 368

Query: 539 GIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEA 598
           G+ P+  TY+ ++D    +     A  L+  M ++G +P + T  +++  L   G  D A
Sbjct: 369 GLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYA 428

Query: 599 LNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
           L+ L+ +   G   D++ YNT+L   C+ GRID     + +M   K  PD
Sbjct: 429 LSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPD 478



 Score = 63.2 bits (152), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 108/586 (18%), Positives = 228/586 (38%), Gaps = 77/586 (13%)

Query: 88  DDFFH--ILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLI 145
           DDF +  +L    ++ +     E    + E  + LN   Y +++   CK   +++A  + 
Sbjct: 72  DDFTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEIF 131

Query: 146 YFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVW 205
             +    G  P +  +NS L        M  A +  + M       N ++Y+ LL     
Sbjct: 132 KTMSSGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCK 191

Query: 206 QKNLSAVHEIWEDYIKHYSL-SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYI 264
              L     +WE+ ++   +  + +   FV    +   +  A +  + MV          
Sbjct: 192 AGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVT--------- 242

Query: 265 NRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQ------ 318
                   + S+ D                +FS VI    +  ++  A+  M++      
Sbjct: 243 --------KGSKADA--------------VAFSTVIGILCKKGHAEEAQNQMIEHLCRSG 280

Query: 319 -----------MQSLGLQPSSHTYDGFIRAIVSDRGLRNGM---EVLKIMQQNNLKPQDS 364
                      M S    PS+  ++  I A+   + L +G+   + +K M++    P   
Sbjct: 281 MLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLE 340

Query: 365 TIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKPERAIKIFAKM 421
           T   +     KA +LD A+ L+++++      +   +SA +     + K +RA  +  +M
Sbjct: 341 TYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEM 400

Query: 422 -RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISM 480
            ++ + PD       F+    +NA  + G    +VD A  ++ +E   AR +     ++ 
Sbjct: 401 SKEGVFPDS------FTDASILNALSKAG----KVDYA--LSHLETMKARGSTP-DLVTY 447

Query: 481 KNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKT 537
             LL  L   G I E I +         TP   +Y  ++ +L  + ++  A  IF++M  
Sbjct: 448 NTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVK 507

Query: 538 CGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDE 597
            G+ P+   Y+ ++D   + R      AL  ++      P  + +  ++  L   G  ++
Sbjct: 508 RGVLPDTVLYHSLLD--GLARNGLEDLAL-ELLKTSLCKPDFVMHKMVLDGLCKAGKAED 564

Query: 598 ALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
           A  +++ ++  G P D   Y +++    + G++D    +++   + 
Sbjct: 565 ACEVVERMADAGFPADAFTYISVVSGLRKLGKVDKARQLVDDASET 610



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 92/419 (21%), Positives = 155/419 (36%), Gaps = 76/419 (18%)

Query: 323 GLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLA 382
           G Q S  TY+ F+ A+      +   E  + MQ+    P D T + +     KA ELD A
Sbjct: 33  GYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDFTYSIVLRGLCKAGELDKA 92

Query: 383 EALLDQISRCT---NPKPFSAFLAACDTMDKPERAIKIFAKMRQK--LRPDIRTYELLFS 437
           + LL Q+       N   +S  +  C    + + A++IF  M       PD+ T+  L  
Sbjct: 93  KELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEIFKTMSSGGGCVPDVVTFNSLLK 152

Query: 438 LFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRE-- 495
              +     E   +F               MA+   + + IS   LL  L   G + E  
Sbjct: 153 GLCSGERMSEAFVLFEY-------------MAKAGCEPNVISYSTLLDGLCKAGRLDEAC 199

Query: 496 --------------LIQYF---------------CDSKTPLGTP-------TYNTVLHSL 519
                         L+ Y                CD    + T         ++TV+  L
Sbjct: 200 RLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTVIGIL 259

Query: 520 VE---AQESHRAM--------------EIFKQMKTCGIPPNAATYNIMIDC-CSIIRCFK 561
            +   A+E+   M              + F++M +   PP+A  +N +I   C   R   
Sbjct: 260 CKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPD 319

Query: 562 SASALVSMMVRDGFY--PQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNT 619
                  M     FY  P   TY  ++  L      DEA  L++ ++  G+  DV+ Y+ 
Sbjct: 320 GVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSA 379

Query: 620 ILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678
           ++   C+ G++D    ++E+M +  V PD  T   + +     G  + A+  L+ +  R
Sbjct: 380 LVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKAR 438



 Score = 45.8 bits (107), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 74/333 (22%), Positives = 132/333 (39%), Gaps = 49/333 (14%)

Query: 39  TLTTTMG-LNEESISKATQMQIVDALCR-GERSRASHLLLNLGHAHHSLGADDF---FHI 93
             +T +G L ++  ++  Q Q+++ LCR G    A      +   +H   A+ F    H 
Sbjct: 251 AFSTVIGILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHA 310

Query: 94  LNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYG 153
           +    R PD + + +  + M+E     N + Y +M+  LCK   L+EA  L+  +   YG
Sbjct: 311 VCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMA-NYG 369

Query: 154 IYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVH 213
           + P +  Y++ +    KL  +  A   L+ M    V  +  T   +L        LS   
Sbjct: 370 LSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASIL------NALSKAG 423

Query: 214 EIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLR 273
           ++       Y+LS     K   S   L      Y TL                  +G  +
Sbjct: 424 KV------DYALSHLETMKARGSTPDL----VTYNTLL-----------------DGLCK 456

Query: 274 SSRLDIPIPLNALPVMKVLR---WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHT 330
           + R+D  I   A  V        +S++ +I A  R+  +  A  +  +M   G+ P +  
Sbjct: 457 AGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGVLPDTVL 516

Query: 331 YDGFIRAIVSDRGLRNGME--VLKIMQQNNLKP 361
           Y   +  +      RNG+E   L++++ +  KP
Sbjct: 517 YHSLLDGLA-----RNGLEDLALELLKTSLCKP 544


>gi|414871539|tpg|DAA50096.1| TPA: ATP binding protein [Zea mays]
          Length = 692

 Score = 88.2 bits (217), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 95/370 (25%), Positives = 157/370 (42%), Gaps = 22/370 (5%)

Query: 314 QLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVEC 373
           +++ QM   G  P    Y   I  I  +  L    E+L  M    LKP      TL    
Sbjct: 320 EVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGL 379

Query: 374 SKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDK---PERAIKIFAKM-RQKLRPDI 429
             A   +  E LL ++     P     F    D   +    +R I++  +M      PD+
Sbjct: 380 CSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCMPDV 439

Query: 430 RTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKA--- 486
            TY  + + F       +EG +   V   K + A       N I ++ I +K L  A   
Sbjct: 440 ITYTTVINGF------CKEGLIDEAVMLLKSMTAC--GCKPNTISYT-IVLKGLCSAERW 490

Query: 487 LGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAAT 546
           + AE ++ ++IQ  C    PL   T+NT+++ L +     +A+E+ KQM   G  P+  +
Sbjct: 491 VDAEDLMSQMIQQGC----PLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLIS 546

Query: 547 YNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVS 606
           Y+ +ID          A  L+++MV  G  P T+ Y+++   L   G  ++ + + D + 
Sbjct: 547 YSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQ 606

Query: 607 LEGIPHDVLLYNTILKKACEKGRID-VIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFH 665
              I  D +LYN ++   C++G  +  IEF +  M  +   P+ ST   +  G  + GF 
Sbjct: 607 DTTIRSDAVLYNAVISSLCKRGETERAIEF-LAYMVSSGCVPNESTYTILIRGLASEGFV 665

Query: 666 NSAMEALQVL 675
             A E L  L
Sbjct: 666 KEAQEMLTEL 675



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 86/387 (22%), Positives = 162/387 (41%), Gaps = 24/387 (6%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           S++ V+      +  G  ++LM +M  +   P+  T++  I  +  +       EVL  M
Sbjct: 266 SYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQM 325

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDK 410
            ++   P     AT+     K   L++A  +L+++      KP    ++  L    + ++
Sbjct: 326 VEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPS-YGLKPNVVCYNTLLKGLCSAER 384

Query: 411 PERAIKIFAKMRQKLRP-DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
            E   ++ A+M  K  P D  T+ +L              + F Q     R+  +   M 
Sbjct: 385 WEETEELLAEMFDKDCPLDDVTFNILV-------------DFFCQNGLVDRVIELLEQML 431

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLG----TPTYNTVLHSLVEAQES 525
            +      I+   ++     EG+I E +     S T  G    T +Y  VL  L  A+  
Sbjct: 432 EHGCMPDVITYTTVINGFCKEGLIDEAVMLL-KSMTACGCKPNTISYTIVLKGLCSAERW 490

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
             A ++  QM   G P N  T+N +I+        + A  L+  M+ +G  P  ++Y+ +
Sbjct: 491 VDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTV 550

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           I  L   G  DEAL LL+++  +G+  + ++Y++I      +GRI+ +  + + +    +
Sbjct: 551 IDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQDTTI 610

Query: 646 QPDPSTCHFVFSGYVNCGFHNSAMEAL 672
           + D    + V S     G    A+E L
Sbjct: 611 RSDAVLYNAVISSLCKRGETERAIEFL 637



 Score = 69.7 bits (169), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 64/265 (24%), Positives = 118/265 (44%), Gaps = 11/265 (4%)

Query: 412 ERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           ER  ++ A+M      PDIR Y  +      ++   +EG++    +   R+ +  +   +
Sbjct: 316 ERVHEVLAQMVEHGCTPDIRMYATI------IDGICKEGHLEVAHEILNRMPSYGL---K 366

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAME 530
            N+   +  +K L  A   E    EL+    D   PL   T+N ++    +     R +E
Sbjct: 367 PNVVCYNTLLKGLCSAERWE-ETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIE 425

Query: 531 IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590
           + +QM   G  P+  TY  +I+          A  L+  M   G  P T++YT ++K L 
Sbjct: 426 LLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLC 485

Query: 591 DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650
               + +A +L+  +  +G P + + +NT++   C+KG ++    +++QM  N   PD  
Sbjct: 486 SAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLI 545

Query: 651 TCHFVFSGYVNCGFHNSAMEALQVL 675
           +   V  G    G  + A+E L V+
Sbjct: 546 SYSTVIDGLGKAGKTDEALELLNVM 570



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 79/182 (43%), Gaps = 4/182 (2%)

Query: 492 MIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI 551
           ++R+L  + C+        +YN VL  L  A+      E+ ++M     PPN  T+N +I
Sbjct: 251 LLRDLPSFGCEPDVV----SYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLI 306

Query: 552 DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIP 611
                   F+    +++ MV  G  P    Y  +I  +   G  + A  +L+ +   G+ 
Sbjct: 307 SYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYGLK 366

Query: 612 HDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEA 671
            +V+ YNT+LK  C   R +  E ++ +M       D  T + +   +   G  +  +E 
Sbjct: 367 PNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIEL 426

Query: 672 LQ 673
           L+
Sbjct: 427 LE 428



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/136 (22%), Positives = 65/136 (47%)

Query: 513 NTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVR 572
           N VL+++ +      A+ + + + + G  P+  +YN ++    + + +     L+  MVR
Sbjct: 233 NLVLNAICDQGSVDEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVR 292

Query: 573 DGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDV 632
               P  +T+  LI  L   G F+    +L  +   G   D+ +Y TI+   C++G ++V
Sbjct: 293 MACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEV 352

Query: 633 IEFIIEQMHQNKVQPD 648
              I+ +M    ++P+
Sbjct: 353 AHEILNRMPSYGLKPN 368



 Score = 47.4 bits (111), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 71/169 (42%), Gaps = 2/169 (1%)

Query: 505 TPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSAS 564
            P    TY  V+ +L        A+ +  +M   G  P    Y+++++       F+SA 
Sbjct: 155 VPPNAYTYFPVVRALCARGRIADALAVLDEMPRRGCAPIPPMYHVILEAACRGGGFRSAV 214

Query: 565 ALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL-DLVSLEGIPHDVLLYNTILKK 623
            ++  +   G          ++  + D G  DEAL+LL DL S  G   DV+ YN +LK 
Sbjct: 215 RVLEDLHARGCALDVGNCNLVLNAICDQGSVDEALHLLRDLPSF-GCEPDVVSYNAVLKG 273

Query: 624 ACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEAL 672
            C   R   ++ ++E+M +    P+  T + + S     G      E L
Sbjct: 274 LCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVL 322



 Score = 42.0 bits (97), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 77/370 (20%), Positives = 147/370 (39%), Gaps = 38/370 (10%)

Query: 90  FFHILNYCARSPDPLF--VMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYF 147
           F  +++Y  R  + LF  V E    M E     + + Y  ++  +CK G+LE A  ++  
Sbjct: 302 FNTLISYLCR--NGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNR 359

Query: 148 LGERYGIYPILPVYNSFL-GACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQ 206
           +   YG+ P +  YN+ L G C+         L  ++ D +    ++VT+  L+      
Sbjct: 360 M-PSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFD-KDCPLDDVTFNILVDFFCQN 417

Query: 207 KNLSAVHEIWEDYIKHYSLS-IFSLRKFVWSFTRLRDLKSAYETLQHMVA---------- 255
             +  V E+ E  ++H  +  + +    +  F +   +  A   L+ M A          
Sbjct: 418 GLVDRVIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISY 477

Query: 256 -LAMMGKLYINRTSEGR-LRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAE 313
            + + G     R  +   L S  +    PLN +        +F+ +I+   +    GL E
Sbjct: 478 TIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPI--------TFNTLINFLCK---KGLVE 526

Query: 314 Q---LMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLS 370
           Q   L+ QM   G  P   +Y   I  +         +E+L +M    + P     ++++
Sbjct: 527 QAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIA 586

Query: 371 VECSKALELDLAEALLDQISRCT---NPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLR 426
              S+   ++    + D I   T   +   ++A +++     + ERAI+  A M      
Sbjct: 587 SALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCV 646

Query: 427 PDIRTYELLF 436
           P+  TY +L 
Sbjct: 647 PNESTYTILI 656



 Score = 41.2 bits (95), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 43/99 (43%)

Query: 577 PQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFI 636
           P   TY  +++ L   G   +AL +LD +   G      +Y+ IL+ AC  G       +
Sbjct: 157 PNAYTYFPVVRALCARGRIADALAVLDEMPRRGCAPIPPMYHVILEAACRGGGFRSAVRV 216

Query: 637 IEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
           +E +H      D   C+ V +   + G  + A+  L+ L
Sbjct: 217 LEDLHARGCALDVGNCNLVLNAICDQGSVDEALHLLRDL 255


>gi|297743291|emb|CBI36158.3| unnamed protein product [Vitis vinifera]
          Length = 638

 Score = 88.2 bits (217), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 115/523 (21%), Positives = 216/523 (41%), Gaps = 88/523 (16%)

Query: 198 ELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLK---SAYETLQHMV 254
           E+LKL V  + +  V +I  D   H  +  F      W+  R R+ +   + Y  L H +
Sbjct: 83  EVLKLKVDHRLVREVLKI--DVEIHVKIQFFK-----WAGKR-RNFEHDSTTYMALIHCL 134

Query: 255 ALA-MMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAE 313
             A M+G+++  +T +  +RS+ +  P  L             S+++   G+ +    A 
Sbjct: 135 DEAGMLGEMW--KTIQEMVRSTCVIGPADL-------------SEIVKVLGKAKMVNKAL 179

Query: 314 QLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM-QQNNLKPQDSTIATLSVE 372
            +  Q++    +P+S+TY+  I  ++ +       E+   M  + +  P   T + L   
Sbjct: 180 SIFYQIKGRKCKPTSNTYNSMILMLMQEGHHEKVHELYNEMCNEGDCLPDTVTYSALIAA 239

Query: 373 CSKALELDLAEALLDQISRC---TNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPD 428
             K    D A +L D++         K ++  L     + + E+A+ +  +M++K     
Sbjct: 240 FGKLGRDDSAISLFDEMKENGLHPTAKIYTTILGIYFKLGRVEKALGLVQEMKEKGCALT 299

Query: 429 IRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALG 488
           + TY  L    G      E  ++F             M+M +   +   + + NL+  LG
Sbjct: 300 VYTYTELIKGVGKAGKVEEAYSIF-------------MNMLKEGCKPDVVLINNLINLLG 346

Query: 489 AEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIF---KQMKTCGIPP 542
             G + + I+ F + ++   TP   TYNTV+ +L E++   RA E F   ++MK  G+ P
Sbjct: 347 KAGRLADAIKLFEEMESLQCTPNVVTYNTVIKALFESKA--RASEAFLWYEKMKENGVVP 404

Query: 543 NAATYNIMIDC-----------------------------CSIIRC------FKSASALV 567
           ++ TY+I+ID                              CS+I        +++A+ L 
Sbjct: 405 SSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFAPCPAAYCSLINALGKAKRYEAANELF 464

Query: 568 SMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEK 627
             +  +  Y     Y  +IK L   G   EA++L + +   G   DV  YN ++      
Sbjct: 465 QELRENCGYSSARVYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNALMSGMVRV 524

Query: 628 GRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAME 670
           G  D    ++  M +N   PD ++ + + +G+   G    A+E
Sbjct: 525 GMTDEAHSLLRTMEENGCTPDLNSHNIILNGFARTGGPKGAIE 567



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 100/492 (20%), Positives = 194/492 (39%), Gaps = 74/492 (15%)

Query: 122 NKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCL 181
           N   L++MQ     G+ E+   L   +       P    Y++ + A  KL     A    
Sbjct: 198 NSMILMLMQE----GHHEKVHELYNEMCNEGDCLPDTVTYSALIAAFGKLGRDDSAISLF 253

Query: 182 DLMDSRMVGKNEVTYTELL----KLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSF 237
           D M    +      YT +L    KL   +K L  V E+ E   K  +L++++  + +   
Sbjct: 254 DEMKENGLHPTAKIYTTILGIYFKLGRVEKALGLVQEMKE---KGCALTVYTYTELIKGV 310

Query: 238 TRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFS 297
            +   ++ AY              +++N   EG     + D+ +               +
Sbjct: 311 GKAGKVEEAYS-------------IFMNMLKEG----CKPDVVL--------------IN 339

Query: 298 DVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVL--KIMQ 355
           ++I+  G+      A +L  +M+SL   P+  TY+  I+A+   +  R     L  + M+
Sbjct: 340 NLINLLGKAGRLADAIKLFEEMESLQCTPNVVTYNTVIKALFESKA-RASEAFLWYEKMK 398

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKPE 412
           +N + P   T + L     K   ++ A  LL+++        P  + + + A     + E
Sbjct: 399 ENGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFAPCPAAYCSLINALGKAKRYE 458

Query: 413 RAIKIFAKMRQKLR-PDIRTYELLFSLFGNVNAPYEEGNMFSQVDS------AKRINAIE 465
            A ++F ++R+       R Y ++    G      E  ++F+++            NA+ 
Sbjct: 459 AANELFQELRENCGYSSARVYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNALM 518

Query: 466 MDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQES 525
             M R  +               A  ++R + +  C   TP    ++N +L+        
Sbjct: 519 SGMVRVGMTDE------------AHSLLRTMEENGC---TP-DLNSHNIILNGFARTGGP 562

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
             A+E+F +MK   I P+  +YN ++ C S    F+ A+ L+  M   GF    +TY+++
Sbjct: 563 KGAIEMFTRMKNSKIKPDVVSYNTVLGCLSRAGMFEEAAKLMKEMNSKGFEYDLITYSSI 622

Query: 586 IKILLDYGDFDE 597
           ++ +   G  DE
Sbjct: 623 LEAV---GKIDE 631



 Score = 42.4 bits (98), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 63/339 (18%), Positives = 128/339 (37%), Gaps = 15/339 (4%)

Query: 315 LMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECS 374
           L+ +M+  G   + +TY   I+ +     +     +   M +   KP    I  L     
Sbjct: 287 LVQEMKEKGCALTVYTYTELIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLINNLINLLG 346

Query: 375 KALELDLAEALLDQIS--RCT-NPKPFSAFLAAC-DTMDKPERAIKIFAKMRQK-LRPDI 429
           KA  L  A  L +++   +CT N   ++  + A  ++  +   A   + KM++  + P  
Sbjct: 347 KAGRLADAIKLFEEMESLQCTPNVVTYNTVIKALFESKARASEAFLWYEKMKENGVVPSS 406

Query: 430 RTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGA 489
            TY +L   F   N   +   +  ++D          +        ++ S+ N L     
Sbjct: 407 FTYSILIDGFCKTNRVEKALLLLEEMD----------EKGFAPCPAAYCSLINALGKAKR 456

Query: 490 EGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNI 549
                EL Q   ++        Y  ++  L +      A+++F +MK  G  P+   YN 
Sbjct: 457 YEAANELFQELRENCGYSSARVYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNA 516

Query: 550 MIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEG 609
           ++     +     A +L+  M  +G  P   ++  ++      G    A+ +   +    
Sbjct: 517 LMSGMVRVGMTDEAHSLLRTMEENGCTPDLNSHNIILNGFARTGGPKGAIEMFTRMKNSK 576

Query: 610 IPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
           I  DV+ YNT+L      G  +    ++++M+    + D
Sbjct: 577 IKPDVVSYNTVLGCLSRAGMFEEAAKLMKEMNSKGFEYD 615


>gi|302821741|ref|XP_002992532.1| hypothetical protein SELMODRAFT_135367 [Selaginella moellendorffii]
 gi|300139734|gb|EFJ06470.1| hypothetical protein SELMODRAFT_135367 [Selaginella moellendorffii]
          Length = 759

 Score = 88.2 bits (217), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 75/328 (22%), Positives = 132/328 (40%), Gaps = 20/328 (6%)

Query: 353 IMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRC---TNPKPFSAFLAACDTMD 409
           ++QQN     D   +T+     +    D A+ + D+        N   +S+ + A     
Sbjct: 110 VLQQNLRSQWDKVTSTIISSLGRLGRSDWAQLIFDRAVGAGFGNNVFVYSSLICAYGRSG 169

Query: 410 KPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
           K  +A++IF  M+   +P++  Y          NA  +  +      +A RI     +M 
Sbjct: 170 KLAKAVEIFEAMKVVCKPNLVVY----------NAVIDACSKGGDYPTALRIF---REML 216

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSK---TPLGTPTYNTVLHSLVEAQESH 526
              +    I+   L+ A G      E  + F + +         TYNT++ +     + H
Sbjct: 217 EQGMSPDRITFNTLISAAGRANRWEECDRIFAEMEERGIARDDVTYNTLIATYCRGGQMH 276

Query: 527 RAMEIFKQM-KTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
               + + M K+ GI P+  TY+ MID  + +     A AL   M      P  + Y  +
Sbjct: 277 LGAALMETMAKSSGIEPSVITYSTMIDGYAKLGLAHEAIALFQEMRNQNVEPDGICYNTM 336

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           + I    G+FDEA ++   +   G   D++ YN +L    ++G+      ++E+M Q   
Sbjct: 337 VDIHARLGNFDEAHSIRRAMEEAGFAKDIVTYNALLDSYGKQGKFREAMSLLEEMKQRGA 396

Query: 646 QPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
            P+  T   +   Y   GFH  AM   Q
Sbjct: 397 SPNILTYSALIDAYCKHGFHRDAMALFQ 424



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 88/373 (23%), Positives = 158/373 (42%), Gaps = 26/373 (6%)

Query: 297 SDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEV---LKI 353
           S +I + GR   S  A+ +  +    G   +   Y   I A      L   +E+   +K+
Sbjct: 124 STIISSLGRLGRSDWAQLIFDRAVGAGFGNNVFVYSSLICAYGRSGKLAKAVEIFEAMKV 183

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPER 413
           + + NL   ++ I   S        L +   +L+Q     +   F+  ++A    ++ E 
Sbjct: 184 VCKPNLVVYNAVIDACSKGGDYPTALRIFREMLEQ-GMSPDRITFNTLISAAGRANRWEE 242

Query: 414 AIKIFAKMRQK--LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMD-MAR 470
             +IFA+M ++   R D+ TY  L        A Y  G           + A  M+ MA+
Sbjct: 243 CDRIFAEMEERGIARDDV-TYNTLI-------ATYCRGGQM-------HLGAALMETMAK 287

Query: 471 NN-IQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPT---YNTVLHSLVEAQESH 526
           ++ I+ S I+   ++      G+  E I  F + +     P    YNT++          
Sbjct: 288 SSGIEPSVITYSTMIDGYAKLGLAHEAIALFQEMRNQNVEPDGICYNTMVDIHARLGNFD 347

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
            A  I + M+  G   +  TYN ++D       F+ A +L+  M + G  P  +TY+ALI
Sbjct: 348 EAHSIRRAMEEAGFAKDIVTYNALLDSYGKQGKFREAMSLLEEMKQRGASPNILTYSALI 407

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
                +G   +A+ L   V   G+  DV+LY+T++   C+ G  D    ++E+M  N ++
Sbjct: 408 DAYCKHGFHRDAMALFQDVKKAGLQPDVVLYSTLVDGCCKNGSPDEALALLEEMADNGIR 467

Query: 647 PDPSTCHFVFSGY 659
           P+  T + +   Y
Sbjct: 468 PNVITYNSLLDAY 480



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 69/334 (20%), Positives = 127/334 (38%), Gaps = 85/334 (25%)

Query: 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
           R +F+ +I A GR       +++  +M+  G+     TY+                    
Sbjct: 224 RITFNTLISAAGRANRWEECDRIFAEMEERGIARDDVTYN-------------------- 263

Query: 353 IMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTM 408
                          TL     +  ++ L  AL++ +++ +  +P    +S  +     +
Sbjct: 264 ---------------TLIATYCRGGQMHLGAALMETMAKSSGIEPSVITYSTMIDGYAKL 308

Query: 409 DKPERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMD 467
                AI +F +MR Q + PD   Y  +                   VD   R+      
Sbjct: 309 GLAHEAIALFQEMRNQNVEPDGICYNTM-------------------VDIHARL------ 343

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHR 527
               N   +H    ++ +A+   G  ++++             TYN +L S  +  +   
Sbjct: 344 ---GNFDEAH----SIRRAMEEAGFAKDIV-------------TYNALLDSYGKQGKFRE 383

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           AM + ++MK  G  PN  TY+ +ID        + A AL   + + G  P  + Y+ L+ 
Sbjct: 384 AMSLLEEMKQRGASPNILTYSALIDAYCKHGFHRDAMALFQDVKKAGLQPDVVLYSTLVD 443

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTIL 621
                G  DEAL LL+ ++  GI  +V+ YN++L
Sbjct: 444 GCCKNGSPDEALALLEEMADNGIRPNVITYNSLL 477



 Score = 48.9 bits (115), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 72/317 (22%), Positives = 135/317 (42%), Gaps = 37/317 (11%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQM-QSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           +++ +I    R     L   LM  M +S G++PS  TY   I            + + + 
Sbjct: 261 TYNTLIATYCRGGQMHLGAALMETMAKSSGIEPSVITYSTMIDGYAKLGLAHEAIALFQE 320

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPER 413
           M+  N++P      T+    ++    D A ++   +      K    + A  D+  K  +
Sbjct: 321 MRNQNVEPDGICYNTMVDIHARLGNFDEAHSIRRAMEEAGFAKDIVTYNALLDSYGKQGK 380

Query: 414 ---AIKIFAKMRQK-LRPDIRTYELLF-------------SLFGNVNAPYEEGNMF---S 453
              A+ +  +M+Q+   P+I TY  L              +LF +V     + ++    +
Sbjct: 381 FREAMSLLEEMKQRGASPNILTYSALIDAYCKHGFHRDAMALFQDVKKAGLQPDVVLYST 440

Query: 454 QVD------SAKRINAIEMDMARNNIQHSHISMKNLLKALGAEG-MIREL---IQYFCDS 503
            VD      S     A+  +MA N I+ + I+  +LL A G +  M+R+    +++F   
Sbjct: 441 LVDGCCKNGSPDEALALLEEMADNGIRPNVITYNSLLDAYGRQCLMVRKTFPKLRFFLLP 500

Query: 504 K-TPLGTPTYNTVLHSLVEAQESHR----AMEIFKQMKTCGIPPNAATYNIMIDCCSIIR 558
           + T L  P+      SLV+ ++       A  +F++M   G+ PN  T++ +++ CS   
Sbjct: 501 RVTMLLKPSMQDDQQSLVDPKQKQALVLAAARVFREMAKNGVKPNVVTFSSILNACSHCA 560

Query: 559 CFKSASALV-SMMVRDG 574
             + AS L+ +M V DG
Sbjct: 561 SVEDASNLLEAMRVFDG 577


>gi|224123314|ref|XP_002319048.1| predicted protein [Populus trichocarpa]
 gi|222857424|gb|EEE94971.1| predicted protein [Populus trichocarpa]
          Length = 497

 Score = 88.2 bits (217), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/284 (23%), Positives = 121/284 (42%), Gaps = 17/284 (5%)

Query: 394 NPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMF 452
           N   FS  L    +  K   A+K+F +M +    PD+ TY  +      +N   + G+  
Sbjct: 46  NHVTFSTLLNGLSSKAKIIDAVKLFDEMVKMGYEPDVITYSTI------INGLCKMGSTT 99

Query: 453 SQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP-- 510
             +   K+       M     + + +    ++ +L  + +I E +++  +      +P  
Sbjct: 100 MAIQLLKK-------MEEKGCKPNVVVYSTIIDSLCKDKLITEAMEFLSEMVNRGISPNV 152

Query: 511 -TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSM 569
            TY+++LH       S+ A  +FKQM    + P+  T+NI++D  S       A  +   
Sbjct: 153 VTYSSILHGFCNLGRSNEATSLFKQMVERNVMPDTVTFNILVDGLSKEGMILEAQCVFET 212

Query: 570 MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
           M+  G  P   TY AL+         DEA  L +++  +G    V  YN ++K  C+ GR
Sbjct: 213 MIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGHCKSGR 272

Query: 630 IDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           ID  + ++ +M    + PD  T   +  G+   G    A + L+
Sbjct: 273 IDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLE 316



 Score = 87.0 bits (214), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 83/384 (21%), Positives = 162/384 (42%), Gaps = 22/384 (5%)

Query: 311 LAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLS 370
            A  ++  M  LGLQP+  T+   +  + S   + + +++   M +   +P   T +T+ 
Sbjct: 30  FAFSVLGNMFKLGLQPNHVTFSTLLNGLSSKAKIIDAVKLFDEMVKMGYEPDVITYSTII 89

Query: 371 VECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPE---RAIKIFAKMRQK-LR 426
               K     +A  LL ++           +    D++ K +    A++  ++M  + + 
Sbjct: 90  NGLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTIIDSLCKDKLITEAMEFLSEMVNRGIS 149

Query: 427 PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKA 486
           P++ TY  +   F N+    E  ++F Q             M   N+    ++   L+  
Sbjct: 150 PNVVTYSSILHGFCNLGRSNEATSLFKQ-------------MVERNVMPDTVTFNILVDG 196

Query: 487 LGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPN 543
           L  EGMI E   + +   +        TYN ++       +   A ++F  M   G  P+
Sbjct: 197 LSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPS 256

Query: 544 AATYNIMIDC-CSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL 602
             +YNI+I   C   R    A  L++ M      P T+TY+ L+K     G   +A  LL
Sbjct: 257 VRSYNILIKGHCKSGR-IDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLL 315

Query: 603 DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNC 662
           + +   G+  D++ Y+ +L   C++G +D    +++ M ++K++P+      +  G  N 
Sbjct: 316 EEMRSYGLLPDLMTYSIVLDGLCKQGHLDEAFELLKAMQESKIEPNIFIYTILIQGMCNF 375

Query: 663 GFHNSAMEALQVLSMRMLCEEVST 686
           G   +A E    L ++ +  +V T
Sbjct: 376 GKLEAARELFSNLFVKGIQPDVVT 399



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 89/424 (20%), Positives = 176/424 (41%), Gaps = 27/424 (6%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           ++S +I+   +  ++ +A QL+ +M+  G +P+   Y   I ++  D+ +   ME L  M
Sbjct: 84  TYSTIINGLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTIIDSLCKDKLITEAMEFLSEM 143

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPKPFSAFLAACDTMDKPER 413
               + P   T +++          + A +L  Q + R   P   + F    D + K   
Sbjct: 144 VNRGISPNVVTYSSILHGFCNLGRSNEATSLFKQMVERNVMPDTVT-FNILVDGLSKEGM 202

Query: 414 AIK---IFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
            ++   +F  M +K + P++ TY  L   + +           SQ+D A+++  I   M 
Sbjct: 203 ILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQ----------SQMDEAQKLFNI---MV 249

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESH 526
           R     S  S   L+K     G I E      +      TP   TY+T++    +     
Sbjct: 250 RKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQ 309

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
            A ++ ++M++ G+ P+  TY+I++D          A  L+  M      P    YT LI
Sbjct: 310 DAQKLLEEMRSYGLLPDLMTYSIVLDGLCKQGHLDEAFELLKAMQESKIEPNIFIYTILI 369

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
           + + ++G  + A  L   + ++GI  DV+ Y  ++    + G  +    +   M  +   
Sbjct: 370 QGMCNFGKLEAARELFSNLFVKGIQPDVVTYTVMISGLLKGGLSNEACELFRDMAVHGCL 429

Query: 647 PDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLE-----EKRSDFEDLILAE 701
           P+  T + +  G++  G  ++A   ++ +  R    + ST +     E R +   L +  
Sbjct: 430 PNSCTYNVIIQGFLRNGDTSNAGRLIEEMVGRGFSADSSTFQMLSDLESRDEIISLFMHG 489

Query: 702 DSEA 705
            S+ 
Sbjct: 490 SSQG 493


>gi|156083863|ref|XP_001609415.1| pentatricopeptide repeat domain containing protein [Babesia bovis
           T2Bo]
 gi|154796666|gb|EDO05847.1| pentatricopeptide repeat domain containing protein [Babesia bovis]
          Length = 1067

 Score = 88.2 bits (217), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 126/273 (46%), Gaps = 21/273 (7%)

Query: 398 FSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMF---- 452
           FS  L  C  +  P+R +++  K RQ  L+P ++T  ++    G      E   ++    
Sbjct: 664 FSVALDCCLRLKNPKRLLRLITKFRQMGLQPQLQTCGVIIKSLGCCGRIAECKEIWKEMA 723

Query: 453 -SQVDSAKRIN-AIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP 510
            SQ +    +   I +D   NN +       +LL+ +  +G ++              T 
Sbjct: 724 NSQGNEPNEVTYGIMLDAYVNNNRMEE--AMDLLQEMKQKGNVKP------------NTI 769

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
            Y T++    + ++  RAM I+  M + G+  N  TYN +ID C+ +   K+A+AL+  M
Sbjct: 770 MYTTLIKGFGQNRQLQRAMSIYDMMVSEGVMRNTVTYNSIIDACARVGDMKAAAALLEEM 829

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           + +   P  +T++ +IK      + D++  LL ++   GI  D +LYN++L+   + GR+
Sbjct: 830 MMNQVEPDLITFSTIIKGYCVQCNMDQSFQLLSIMYERGIKPDGILYNSLLEGCVKSGRL 889

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
            + E + EQM  + + P   T   +   Y   G
Sbjct: 890 WLCEKLWEQMRIHGIAPSNFTLTILIKMYGRSG 922



 Score = 49.7 bits (117), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 73/387 (18%), Positives = 141/387 (36%), Gaps = 54/387 (13%)

Query: 295  SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
            SFS  +  C R +N     +L+ + + +GLQP   T    I+++     +    E+ K M
Sbjct: 663  SFSVALDCCLRLKNPKRLLRLITKFRQMGLQPQLQTCGVIIKSLGCCGRIAECKEIWKEM 722

Query: 355  --QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPE 412
               Q N +P + T                                +   L A    ++ E
Sbjct: 723  ANSQGN-EPNEVT--------------------------------YGIMLDAYVNNNRME 749

Query: 413  RAIKIFAKMRQK--LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
             A+ +  +M+QK  ++P+   Y  L   FG             Q    +R  +I   M  
Sbjct: 750  EAMDLLQEMKQKGNVKPNTIMYTTLIKGFG-------------QNRQLQRAMSIYDMMVS 796

Query: 471  NNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHR 527
              +  + ++  +++ A    G ++    L++    ++      T++T++          +
Sbjct: 797  EGVMRNTVTYNSIIDACARVGDMKAAAALLEEMMMNQVEPDLITFSTIIKGYCVQCNMDQ 856

Query: 528  AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
            + ++   M   GI P+   YN +++ C           L   M   G  P   T T LIK
Sbjct: 857  SFQLLSIMYERGIKPDGILYNSLLEGCVKSGRLWLCEKLWEQMRIHGIAPSNFTLTILIK 916

Query: 588  ILLDYGDFDEALNLLDLVSLE-GIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
            +    G  D+  +L++ +  E G   +  +Y  ++      GR +    I   +    V+
Sbjct: 917  MYGRSGQLDKVFDLVERLPAEYGFTINAHVYTCLMSACITNGRYNTALDIYRCVKDGSVK 976

Query: 647  PDPSTCHFVFSGYVNCGFHNSAMEALQ 673
            PD  T   +  G         A++ L+
Sbjct: 977  PDAKTYETLLQGVTRGNLFAEAVDLLR 1003



 Score = 42.0 bits (97), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 51/273 (18%), Positives = 116/273 (42%), Gaps = 15/273 (5%)

Query: 108 ETWRMMEEKEIGLNNKC-YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLG 166
           E W+ M   +    N+  Y +M+ A      +EEA +L+  + ++  + P   +Y + + 
Sbjct: 717 EIWKEMANSQGNEPNEVTYGIMLDAYVNNNRMEEAMDLLQEMKQKGNVKPNTIMYTTLIK 776

Query: 167 ACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWED-YIKHYSL 225
              +   +  A    D+M S  V +N VTY  ++       ++ A   + E+  +     
Sbjct: 777 GFGQNRQLQRAMSIYDMMVSEGVMRNTVTYNSIIDACARVGDMKAAAALLEEMMMNQVEP 836

Query: 226 SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMM--GKLYINRTSEGRLRSSRLDIPIPL 283
            + +    +  +    ++  +++ L  M    +   G LY N   EG ++S RL +   L
Sbjct: 837 DLITFSTIIKGYCVQCNMDQSFQLLSIMYERGIKPDGILY-NSLLEGCVKSGRLWLCEKL 895

Query: 284 -NALPVMKVL--RWSFSDVIHACGRTQNSGLAEQLMLQMQSL----GLQPSSHTYDGFIR 336
              + +  +    ++ + +I   GR   SG  +++   ++ L    G   ++H Y   + 
Sbjct: 896 WEQMRIHGIAPSNFTLTILIKMYGR---SGQLDKVFDLVERLPAEYGFTINAHVYTCLMS 952

Query: 337 AIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL 369
           A +++      +++ + ++  ++KP   T  TL
Sbjct: 953 ACITNGRYNTALDIYRCVKDGSVKPDAKTYETL 985


>gi|115449873|ref|NP_001048572.1| Os02g0824000 [Oryza sativa Japonica Group]
 gi|113538103|dbj|BAF10486.1| Os02g0824000 [Oryza sativa Japonica Group]
          Length = 1013

 Score = 88.2 bits (217), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 115/547 (21%), Positives = 210/547 (38%), Gaps = 62/547 (11%)

Query: 161 YNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI 220
           YN+ +    +   +  A   LD+M    V  N  TYT  +      K +    +++E  +
Sbjct: 207 YNTLVAGFCRAGQVDAARGVLDMMKEAGVDPNVATYTPFIVYYCRTKGVEEAFDLYEGMV 266

Query: 221 KH-YSLSIFSLRKFVWSFTRLRDLKSAYETLQHM------------------VALAMMGK 261
           ++   L + +L   V    R      AY   + M                  +A A  GK
Sbjct: 267 RNGVLLDVVTLSALVAGLCRDGRFSEAYALFREMDKVGAAPNHVTYCTLIDSLAKAGRGK 326

Query: 262 LYINRTSEGRLRSSRLDIPIPLNAL-----------PVMKVLRWSFSD-----------V 299
             ++   E   R   +D+ +   AL            V   LR++ SD           +
Sbjct: 327 ELLSLLGEMVSRGVVMDL-VTYTALMDWLGKQGKTDEVKDTLRFALSDNLSPNGVTYTVL 385

Query: 300 IHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNL 359
           I A  +  N   AEQ++L+M+   + P+  T+   I   V    L    E  ++M++  +
Sbjct: 386 IDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKATEYKRMMKERGI 445

Query: 360 KPQDSTIATLSVECSKALELDLA-EALLDQISRCTNPKPF--SAFLAACDTMDKPERAIK 416
            P   T  TL     K    D A E   D +        F   + +       K E A+ 
Sbjct: 446 NPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCEGVKVNKFIVDSLVNGLRQNGKIEEAMA 505

Query: 417 IFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQH 475
           +F       L  D   Y  L      ++  ++ G+M +     + +      M RN +  
Sbjct: 506 LFKDASGSGLSLDHVNYTTL------IDGLFKAGDMPTAFKFGQEL------MDRNMLPD 553

Query: 476 SHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIF 532
           + +     +  L   G  +E   +  + +     P   TYNT++ S     E+ +A+++ 
Sbjct: 554 A-VVYNVFINCLCMLGKFKEAKSFLTEMRNMGLKPDQSTYNTMIVSHCRKGETAKALKLL 612

Query: 533 KQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDY 592
            +MK   I PN  TYN ++         + A  L++ MV  GF P ++T+  +++     
Sbjct: 613 HEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSSLTHRRVLQACSQS 672

Query: 593 GDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTC 652
              D  L++ + +   G+  D+ +YNT+L+  C  G       ++E+M  + + PD  T 
Sbjct: 673 RRLDVILDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRKATVVLEEMLGSGIAPDTITF 732

Query: 653 HFVFSGY 659
           + +  G+
Sbjct: 733 NALILGH 739



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 84/378 (22%), Positives = 153/378 (40%), Gaps = 42/378 (11%)

Query: 325 QPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEA 384
           +P++  Y+  + A +SD    +   VL  M +  +     T+ TL     +  ++D A A
Sbjct: 100 RPTTVAYN-ILLAALSDHA--HAPAVLAEMCKRGVPFDGVTVNTLLAGLCRNGQVDAAAA 156

Query: 385 LLDQIS--RCTNPKPFSAFLAA-CDTMDKPERAIKIFAKMR-QKLRPDIRTYELLFSLFG 440
           L D+       +   ++  +A  C   D P  A+ +  +M  Q L  D+  Y  L + F 
Sbjct: 157 LADRGGGIHALDVIGWNTLIAGYCRVGDTPA-ALSVADRMTAQGLPMDVVGYNTLVAGFC 215

Query: 441 NVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISM-----------KNLLKALGA 489
                        QVD+A+ +    +DM +      +++            K + +A   
Sbjct: 216 RA----------GQVDAARGV----LDMMKEAGVDPNVATYTPFIVYYCRTKGVEEAFDL 261

Query: 490 -EGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYN 548
            EGM+R  +         L   T + ++  L        A  +F++M   G  PN  TY 
Sbjct: 262 YEGMVRNGVL--------LDVVTLSALVAGLCRDGRFSEAYALFREMDKVGAAPNHVTYC 313

Query: 549 IMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLE 608
            +ID  +     K   +L+  MV  G     +TYTAL+  L   G  DE  + L     +
Sbjct: 314 TLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDEVKDTLRFALSD 373

Query: 609 GIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSA 668
            +  + + Y  ++   C+   +D  E ++ +M +  + P+  T   V +G+V  G  + A
Sbjct: 374 NLSPNGVTYTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKA 433

Query: 669 MEALQVLSMRMLCEEVST 686
            E  +++  R +   V T
Sbjct: 434 TEYKRMMKERGINPNVVT 451



 Score = 59.7 bits (143), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 109/582 (18%), Positives = 215/582 (36%), Gaps = 93/582 (15%)

Query: 106 VMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFL 165
           V +T R      +  N   Y +++ ALCK   ++EA  ++  + E+  I P +  ++S +
Sbjct: 363 VKDTLRFALSDNLSPNGVTYTVLIDALCKAHNVDEAEQVLLEMEEK-SISPNVVTFSSVI 421

Query: 166 GACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSL 225
               K   +  A     +M  R +  N VTY  L+      +   A  E++ D +     
Sbjct: 422 NGFVKRGLLDKATEYKRMMKERGINPNVVTYGTLIDGFFKFQGQDAALEVYHDML----C 477

Query: 226 SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNA 285
               + KF+        + S    L+    +     L+ + +  G               
Sbjct: 478 EGVKVNKFI--------VDSLVNGLRQNGKIEEAMALFKDASGSG--------------- 514

Query: 286 LPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLR 345
              + +   +++ +I    +  +   A +   ++    + P +  Y+ FI  +      +
Sbjct: 515 ---LSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLPDAVVYNVFINCLCMLGKFK 571

Query: 346 NGMEVLKIMQQNNLKPQDSTIATLSVE-CSKALELDLAEALLDQISRCTNPKPFSAFLAA 404
                L  M+   LKP  ST  T+ V  C K                             
Sbjct: 572 EAKSFLTEMRNMGLKPDQSTYNTMIVSHCRKG---------------------------- 603

Query: 405 CDTMDKPERAIKIFAKMR-QKLRPDIRTYELLFS-LFGN-------------VNAPYEEG 449
                +  +A+K+  +M+   ++P++ TY  L + LFG              V+A +   
Sbjct: 604 -----ETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPS 658

Query: 450 NM-----FSQVDSAKRINAIEMDMAR---NNIQHSHISMKN-LLKALGAEGMIRE---LI 497
           ++           ++R++ I +D+     N   H+ I++ N LL+ L   GM R+   ++
Sbjct: 659 SLTHRRVLQACSQSRRLDVI-LDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRKATVVL 717

Query: 498 QYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSII 557
           +    S     T T+N ++    ++     A   + QM    I PN AT+N ++     +
Sbjct: 718 EEMLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTLLGGLESV 777

Query: 558 RCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLY 617
                A  ++  M + G  P  +TY  L        +  EA+ L   +  +G    V  Y
Sbjct: 778 GRIGEAGTVLIEMEKSGLEPNNLTYDILATGHGKQSNKVEAMRLYCEMVGKGFVPKVSTY 837

Query: 618 NTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
           N ++    + G +   + + + M +  V P   T   + SG+
Sbjct: 838 NALISDFTKAGMMTQAKELFKDMQKRGVHPTSCTYDILVSGW 879



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 106/562 (18%), Positives = 201/562 (35%), Gaps = 85/562 (15%)

Query: 156 PILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEI 215
           P    YN  L A   L    HA   L  M  R V  + VT   LL        + A   +
Sbjct: 101 PTTVAYNILLAA---LSDHAHAPAVLAEMCKRGVPFDGVTVNTLLAGLCRNGQVDAAAAL 157

Query: 216 WEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAM-MGKLYINRTSEGRLRS 274
            +     ++L +      +  + R+ D  +A      M A  + M  +  N    G  R+
Sbjct: 158 ADRGGGIHALDVIGWNTLIAGYCRVGDTPAALSVADRMTAQGLPMDVVGYNTLVAGFCRA 217

Query: 275 SRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGF 334
            ++D                                 A  ++  M+  G+ P+  TY  F
Sbjct: 218 GQVDA--------------------------------ARGVLDMMKEAGVDPNVATYTPF 245

Query: 335 IRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTN 394
           I      +G+    ++ + M +N +     T++ L     +      A AL  ++ +   
Sbjct: 246 IVYYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAYALFREMDKVGA 305

Query: 395 PKPFSAFLAACDTMDKPERAIKIFAKMRQKLRP----DIRTYELLFSLFGNVNAPYEEGN 450
                 +    D++ K  R  ++ + + + +      D+ TY  L    G      ++G 
Sbjct: 306 APNHVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDWLG------KQGK 359

Query: 451 MFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP 510
              +V    R  A+  +++ N + ++ + +  L KA   +   + L++    S +P    
Sbjct: 360 T-DEVKDTLRF-ALSDNLSPNGVTYT-VLIDALCKAHNVDEAEQVLLEMEEKSISP-NVV 415

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID------------------ 552
           T+++V++  V+     +A E  + MK  GI PN  TY  +ID                  
Sbjct: 416 TFSSVINGFVKRGLLDKATEYKRMMKERGINPNVVTYGTLIDGFFKFQGQDAALEVYHDM 475

Query: 553 CCSIIRCFK-SASALVSMMVRDGFYPQTMT----------------YTALIKILLDYGDF 595
            C  ++  K    +LV+ + ++G   + M                 YT LI  L   GD 
Sbjct: 476 LCEGVKVNKFIVDSLVNGLRQNGKIEEAMALFKDASGSGLSLDHVNYTTLIDGLFKAGDM 535

Query: 596 DEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFV 655
             A      +    +  D ++YN  +   C  G+    +  + +M    ++PD ST + +
Sbjct: 536 PTAFKFGQELMDRNMLPDAVVYNVFINCLCMLGKFKEAKSFLTEMRNMGLKPDQSTYNTM 595

Query: 656 FSGYVNCGFHNSAMEALQVLSM 677
              +   G    A++ L  + M
Sbjct: 596 IVSHCRKGETAKALKLLHEMKM 617


>gi|414887392|tpg|DAA63406.1| TPA: hypothetical protein ZEAMMB73_124662 [Zea mays]
          Length = 795

 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 75/319 (23%), Positives = 138/319 (43%), Gaps = 33/319 (10%)

Query: 398 FSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVD 456
           ++A ++A     +   A+ +F +M    ++P + TY ++F  +  ++ P++E  + + VD
Sbjct: 187 YTALVSAFSRAGRFRDAVAVFQRMVDGGVQPALVTYNVVFHAYSKMSVPWKE--VVALVD 244

Query: 457 SAKRINAIEMD--------------------------MARNNIQHSHISMKNLLKALGAE 490
           S K  + IE D                          M     +   ++  +LL   G  
Sbjct: 245 SMKE-DGIERDRYTYNTLISCCRRRGLHREAAQVFDEMKAAGFEPDKVTFNSLLDVYGKA 303

Query: 491 GMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATY 547
               E I      +    TP   TYN+++ + V+      A+E+ ++M+  G+ P+  TY
Sbjct: 304 RKHEEAIGVLKRMENAGCTPSVVTYNSLISAYVKDGLLEEALELKQEMEFRGMKPDVVTY 363

Query: 548 NIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSL 607
             +I     +    +A A  S MVR+G  P   TY ALIK+    G F E + + D +  
Sbjct: 364 TTLISGLDRVGKIDAALATYSEMVRNGCSPNLCTYNALIKLHGVRGKFTEMMAVFDDLRS 423

Query: 608 EGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNS 667
            G   DV+ +NT+L    + G    +  + ++M +    P+  T   + S Y  CG  + 
Sbjct: 424 AGYVPDVVTWNTLLSVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDQ 483

Query: 668 AMEALQVLSMRMLCEEVST 686
           AME  + +    +  ++ST
Sbjct: 484 AMEIYKRMIEAGIYPDIST 502



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 79/359 (22%), Positives = 146/359 (40%), Gaps = 51/359 (14%)

Query: 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
           R++++ +I  C R      A Q+  +M++ G +P   T++  +      R     + VLK
Sbjct: 255 RYTYNTLISCCRRRGLHREAAQVFDEMKAAGFEPDKVTFNSLLDVYGKARKHEEAIGVLK 314

Query: 353 IMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPE 412
            M+     P   T  +L       +   + + LL                         E
Sbjct: 315 RMENAGCTPSVVTYNSL-------ISAYVKDGLL-------------------------E 342

Query: 413 RAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471
            A+++  +M  + ++PD+ TY  L S    V           ++D+A    A   +M RN
Sbjct: 343 EALELKQEMEFRGMKPDVVTYTTLISGLDRVG----------KIDAAL---ATYSEMVRN 389

Query: 472 NIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRA 528
               +  +   L+K  G  G   E++  F D ++    P   T+NT+L    +       
Sbjct: 390 GCSPNLCTYNALIKLHGVRGKFTEMMAVFDDLRSAGYVPDVVTWNTLLSVFGQNGLDSEV 449

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
             +FK+MK  G  P   TY  +I   S    F  A  +   M+  G YP   TY A++  
Sbjct: 450 SGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIYPDISTYNAVLSA 509

Query: 589 LLDYGDFDEALNLL-DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
           L   G +++A  L  ++V  +  P D L Y+++L       ++D ++ + E ++  +++
Sbjct: 510 LARGGRWEQAEKLFAEMVDRDCKP-DELSYSSLLHAYANAKKLDKMKTLSEDIYAERIE 567



 Score = 62.8 bits (151), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 86/433 (19%), Positives = 169/433 (39%), Gaps = 70/433 (16%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +F+ ++   G+ +    A  ++ +M++ G  PS  TY+  I A V D  L   +E+ + M
Sbjct: 292 TFNSLLDVYGKARKHEEAIGVLKRMENAGCTPSVVTYNSLISAYVKDGLLEEALELKQEM 351

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR--CT-NPKPFSAFLAACDTMDKP 411
           +   +KP   T  TL     +  ++D A A   ++ R  C+ N   ++A +       K 
Sbjct: 352 EFRGMKPDVVTYTTLISGLDRVGKIDAALATYSEMVRNGCSPNLCTYNALIKLHGVRGKF 411

Query: 412 ERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIE----- 465
              + +F  +R     PD+ T+  L S+FG      E   +F ++  A  I   +     
Sbjct: 412 TEMMAVFDDLRSAGYVPDVVTWNTLLSVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSL 471

Query: 466 -------------MDMARNNIQ---HSHISMKN-LLKALGAEGMIRELIQYFCDSKTPLG 508
                        M++ +  I+   +  IS  N +L AL   G   +  + F +      
Sbjct: 472 ISSYSRCGLFDQAMEIYKRMIEAGIYPDISTYNAVLSALARGGRWEQAEKLFAEMVDRDC 531

Query: 509 TP---TYNTVLHSLVEAQ--------------------------------------ESHR 527
            P   +Y+++LH+   A+                                      E+ +
Sbjct: 532 KPDELSYSSLLHAYANAKKLDKMKTLSEDIYAERIERHNWLVKTLVLVNNKVNNLPETEK 591

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A +  ++ + C +  N    N M+      +  K    ++S+M+ +       TY +L+ 
Sbjct: 592 AFQELRR-RRCSLDIN--VLNAMVSIYGKNKMVKKVEEVLSLMMENSINHSAATYNSLMH 648

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
           +    GD ++  ++L  +   G+  D   YNT++     KG++     +  +M  + V+P
Sbjct: 649 MYSRLGDCEKCESILTEIKSSGMRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGVKP 708

Query: 648 DPSTCHFVFSGYV 660
           D  T +     YV
Sbjct: 709 DIVTYNIFIKSYV 721



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 76/343 (22%), Positives = 146/343 (42%), Gaps = 33/343 (9%)

Query: 319 MQSLGLQPSSHTYDGFIRAIVSDRGLRNGME-VLKIMQQNNLKPQDSTIATLSVECSKAL 377
           ++S G  P   T++  + ++    GL + +  V K M++    P+  T  +L    S+  
Sbjct: 421 LRSAGYVPDVVTWNTLL-SVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCG 479

Query: 378 ELDLAEALLDQISRC---TNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYE 433
             D A  +  ++       +   ++A L+A     + E+A K+FA+M  +  +PD  +Y 
Sbjct: 480 LFDQAMEIYKRMIEAGIYPDISTYNAVLSALARGGRWEQAEKLFAEMVDRDCKPDELSYS 539

Query: 434 LLFSLFGNVNAPYEEGNMFSQVDSAKRI------------------NAIEMDMARNNIQH 475
            L   + N     ++    S+   A+RI                  N  E + A   ++ 
Sbjct: 540 SLLHAYANAKK-LDKMKTLSEDIYAERIERHNWLVKTLVLVNNKVNNLPETEKAFQELRR 598

Query: 476 SHISMK-NLLKAL----GAEGMIR---ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHR 527
              S+  N+L A+    G   M++   E++    ++       TYN+++H      +  +
Sbjct: 599 RRCSLDINVLNAMVSIYGKNKMVKKVEEVLSLMMENSINHSAATYNSLMHMYSRLGDCEK 658

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
              I  ++K+ G+ P+  +YN +I         K AS L S M   G  P  +TY   IK
Sbjct: 659 CESILTEIKSSGMRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGVKPDIVTYNIFIK 718

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
             +    F+EA++L+  +  +G   +   +N+IL+     GR+
Sbjct: 719 SYVANIMFEEAIDLVRYLVTQGCRPNERTFNSILQGYSRHGRM 761



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 96/487 (19%), Positives = 182/487 (37%), Gaps = 55/487 (11%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y  ++ A  K G LEEA  L   + E  G+ P +  Y + +    ++  +  A      M
Sbjct: 328 YNSLISAYVKDGLLEEALELKQEM-EFRGMKPDVVTYTTLISGLDRVGKIDAALATYSEM 386

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLK 244
                  N  TY  L+KL   +   + +  +++D                     LR   
Sbjct: 387 VRNGCSPNLCTYNALIKLHGVRGKFTEMMAVFDD---------------------LRSAG 425

Query: 245 SAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACG 304
              + +     L++ G+  ++    G  +  +    IP          R ++  +I +  
Sbjct: 426 YVPDVVTWNTLLSVFGQNGLDSEVSGVFKEMKKAGYIPE---------RDTYVSLISSYS 476

Query: 305 RTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDS 364
           R      A ++  +M   G+ P   TY+  + A+          ++   M   + KP + 
Sbjct: 477 RCGLFDQAMEIYKRMIEAGIYPDISTYNAVLSALARGGRWEQAEKLFAEMVDRDCKPDEL 536

Query: 365 TIATLSVECSKALELDLAEALLDQI--SRCTNPKPFSAFLA----ACDTMDKPERAIKIF 418
           + ++L    + A +LD  + L + I   R          L       + + + E+A +  
Sbjct: 537 SYSSLLHAYANAKKLDKMKTLSEDIYAERIERHNWLVKTLVLVNNKVNNLPETEKAFQEL 596

Query: 419 AKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHI 478
            + R  L  DI     + S++G       +  M  +V+    +      M  N+I HS  
Sbjct: 597 RRRRCSL--DINVLNAMVSIYG-------KNKMVKKVEEVLSL------MMENSINHSAA 641

Query: 479 SMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQM 535
           +  +L+      G   +      + K+    P   +YNTV+++     +   A  +F +M
Sbjct: 642 TYNSLMHMYSRLGDCEKCESILTEIKSSGMRPDRYSYNTVIYAYGRKGQMKEASRLFSEM 701

Query: 536 KTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDF 595
           K  G+ P+  TYNI I        F+ A  LV  +V  G  P   T+ ++++    +G  
Sbjct: 702 KCSGVKPDIVTYNIFIKSYVANIMFEEAIDLVRYLVTQGCRPNERTFNSILQGYSRHGRM 761

Query: 596 DEALNLL 602
            EA + L
Sbjct: 762 VEAKSFL 768



 Score = 44.7 bits (104), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 31/133 (23%), Positives = 55/133 (41%), Gaps = 1/133 (0%)

Query: 542 PNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYG-DFDEALN 600
           P+A+ Y  ++   S    F+ A A+   MV  G  P  +TY  +          + E + 
Sbjct: 182 PDASAYTALVSAFSRAGRFRDAVAVFQRMVDGGVQPALVTYNVVFHAYSKMSVPWKEVVA 241

Query: 601 LLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYV 660
           L+D +  +GI  D   YNT++     +G       + ++M     +PD  T + +   Y 
Sbjct: 242 LVDSMKEDGIERDRYTYNTLISCCRRRGLHREAAQVFDEMKAAGFEPDKVTFNSLLDVYG 301

Query: 661 NCGFHNSAMEALQ 673
               H  A+  L+
Sbjct: 302 KARKHEEAIGVLK 314



 Score = 42.4 bits (98), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 63/285 (22%), Positives = 119/285 (41%), Gaps = 40/285 (14%)

Query: 107 METWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLG 166
           ME ++ M E  I  +   Y  ++ AL +GG  E+A  L   + +R    P    Y+S L 
Sbjct: 485 MEIYKRMIEAGIYPDISTYNAVLSALARGGRWEQAEKLFAEMVDR-DCKPDELSYSSLLH 543

Query: 167 ACA---KLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDY---- 219
           A A   KL  M    L  D+   R+   N +  T L+ +     NL    + +++     
Sbjct: 544 AYANAKKLDKM--KTLSEDIYAERIERHNWLVKT-LVLVNNKVNNLPETEKAFQELRRRR 600

Query: 220 ------IKHYSLSIFSLRKFVWSFTRLRDL---------KSAYETLQHMVALAMMGKLYI 264
                 + +  +SI+   K V     +  L          + Y +L HM   + +G    
Sbjct: 601 CSLDINVLNAMVSIYGKNKMVKKVEEVLSLMMENSINHSAATYNSLMHM--YSRLGDCEK 658

Query: 265 NRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGL 324
             +    ++SS             M+  R+S++ VI+A GR      A +L  +M+  G+
Sbjct: 659 CESILTEIKSSG------------MRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGV 706

Query: 325 QPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL 369
           +P   TY+ FI++ V++      +++++ +     +P + T  ++
Sbjct: 707 KPDIVTYNIFIKSYVANIMFEEAIDLVRYLVTQGCRPNERTFNSI 751


>gi|168022838|ref|XP_001763946.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162684951|gb|EDQ71350.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 727

 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 81/378 (21%), Positives = 154/378 (40%), Gaps = 11/378 (2%)

Query: 290 KVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGME 349
           K +   ++ +IH  G+  +   A     +M++ G+  S H Y+  IRA +  + L+  + 
Sbjct: 120 KAVERDYALLIHYYGKRGDKRGARVTFEKMRAAGIDSSVHAYNNLIRAYIMAQNLQGAVS 179

Query: 350 VLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPKP--FSAFLAACD 406
            ++ M+   + P  +T + +      +  ++ AE    + +S   N     +S+ + A  
Sbjct: 180 CVEEMEIEGIFPNAATFSAIISGYGSSGNVEAAEKWFQRSVSENWNHNVAIYSSIIHAYC 239

Query: 407 TMDKPERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIE 465
                ERA  + A M  Q L   +  Y +L   +   +   +  N+F ++ +        
Sbjct: 240 KAGNMERAEALVADMEEQGLEATLGLYNILMDGYARCHIEAQCLNVFHKLKA-------R 292

Query: 466 MDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQES 525
           +D   +    ++  + NL   LG      E  +        L   TY+ ++   V+  + 
Sbjct: 293 IDTGLSPTAVTYGCLINLYTKLGKMMKALEFCKEMKAQGITLNRNTYSMLVDGYVQLGDF 352

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
             A  +F+ M   GI P+  TYNI++      R    A  L+  M   G  P   TY  +
Sbjct: 353 ANAFSVFEDMSEAGIEPDWVTYNILLKAFCKSRQMTRAIQLLGRMKTRGCSPTIQTYITI 412

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           I   +  GD   A   +  + L G   +   YN I+    + G+ID    +I++M    V
Sbjct: 413 IDGFMKTGDVRMAYKTVSEMKLAGCRPNATTYNVIMHNLVQLGQIDRAASVIDEMELAGV 472

Query: 646 QPDPSTCHFVFSGYVNCG 663
           QP+  +   +  G+ + G
Sbjct: 473 QPNFRSYTTLMQGFASIG 490



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 78/375 (20%), Positives = 151/375 (40%), Gaps = 47/375 (12%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTY----DGFIRAIVSDRGLRNGMEVL 351
           +S +IHA  +  N   AE L+  M+  GL+ +   Y    DG+ R  +  + L N    L
Sbjct: 231 YSSIIHAYCKAGNMERAEALVADMEEQGLEATLGLYNILMDGYARCHIEAQCL-NVFHKL 289

Query: 352 KIMQQNNLKPQDST---IATLSVECSKALE-LDLAEALLDQISRCTNPKPFSAFLAACDT 407
           K      L P   T   +  L  +  K ++ L+  + +  Q     N   +S  +     
Sbjct: 290 KARIDTGLSPTAVTYGCLINLYTKLGKMMKALEFCKEMKAQ-GITLNRNTYSMLVDGYVQ 348

Query: 408 MDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM 466
           +     A  +F  M +  + PD  TY +L   F                 S +   AI++
Sbjct: 349 LGDFANAFSVFEDMSEAGIEPDWVTYNILLKAF---------------CKSRQMTRAIQL 393

Query: 467 DMARNNIQHSHISMKN---LLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLV 520
            + R   +    +++    ++      G +R   +   + K     P   TYN ++H+LV
Sbjct: 394 -LGRMKTRGCSPTIQTYITIIDGFMKTGDVRMAYKTVSEMKLAGCRPNATTYNVIMHNLV 452

Query: 521 EAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSII-------RCFKSASALVSMMVRD 573
           +  +  RA  +  +M+  G+ PN  +Y  ++   + I       +C K  + +       
Sbjct: 453 QLGQIDRAASVIDEMELAGVQPNFRSYTTLMQGFASIGEIGLAFKCLKRVNEITQK---- 508

Query: 574 GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVI 633
              P  ++Y +L+K     G    A+ + + ++  G+P +  ++NT+L    ++G +   
Sbjct: 509 ---PPIISYASLLKACCKAGRMQNAIAVTEEMAFAGVPMNNYIFNTLLDGWAQRGDMWEA 565

Query: 634 EFIIEQMHQNKVQPD 648
             I+++M Q    PD
Sbjct: 566 YGIMQKMRQEGFTPD 580



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/168 (20%), Positives = 71/168 (42%)

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           Y  ++H   +  +   A   F++M+  GI  +   YN +I    + +  + A + V  M 
Sbjct: 126 YALLIHYYGKRGDKRGARVTFEKMRAAGIDSSVHAYNNLIRAYIMAQNLQGAVSCVEEME 185

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
            +G +P   T++A+I      G+ + A         E   H+V +Y++I+   C+ G ++
Sbjct: 186 IEGIFPNAATFSAIISGYGSSGNVEAAEKWFQRSVSENWNHNVAIYSSIIHAYCKAGNME 245

Query: 632 VIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRM 679
             E ++  M +  ++      + +  GY  C      +     L  R+
Sbjct: 246 RAEALVADMEEQGLEATLGLYNILMDGYARCHIEAQCLNVFHKLKARI 293



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 91/481 (18%), Positives = 183/481 (38%), Gaps = 56/481 (11%)

Query: 121 NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLC 180
           N   Y  ++ A CK G +E A  L+  + E+ G+   L +YN  +   A+ H        
Sbjct: 227 NVAIYSSIIHAYCKAGNMERAEALVADMEEQ-GLEATLGLYNILMDGYARCHIEAQCLNV 285

Query: 181 LDLMDSRM---VGKNEVTYTELLKLAV-WQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWS 236
              + +R+   +    VTY  L+ L     K + A+    E   +  +L+  +    V  
Sbjct: 286 FHKLKARIDTGLSPTAVTYGCLINLYTKLGKMMKALEFCKEMKAQGITLNRNTYSMLVDG 345

Query: 237 FTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSF 296
           + +L D  +A+   + M              SE  +    +   I L A           
Sbjct: 346 YVQLGDFANAFSVFEDM--------------SEAGIEPDWVTYNILLKAF---------- 381

Query: 297 SDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQ 356
                 C +++    A QL+ +M++ G  P+  TY   I   +    +R   + +  M+ 
Sbjct: 382 ------C-KSRQMTRAIQLLGRMKTRGCSPTIQTYITIIDGFMKTGDVRMAYKTVSEMKL 434

Query: 357 NNLKPQDSTIATLSVECSKALELDLAEALLDQISRC---TNPKPFSAFLAACDTMDKPER 413
              +P  +T   +     +  ++D A +++D++       N + ++  +    ++ +   
Sbjct: 435 AGCRPNATTYNVIMHNLVQLGQIDRAASVIDEMELAGVQPNFRSYTTLMQGFASIGEIGL 494

Query: 414 AIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNN 472
           A K   ++ +   +P I +Y  L      + A  + G M + +       A+  +MA   
Sbjct: 495 AFKCLKRVNEITQKPPIISYASL------LKACCKAGRMQNAI-------AVTEEMAFAG 541

Query: 473 IQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAM 529
           +  ++     LL      G + E        +    TP   +Y + +++  +A +  +A 
Sbjct: 542 VPMNNYIFNTLLDGWAQRGDMWEAYGIMQKMRQEGFTPDIHSYTSFVNACCKAGDMQKAT 601

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
           E  ++MK   + PN  TY I+I   + +   + A      M   G  P    Y  ++  L
Sbjct: 602 ETIEEMKQQDLQPNLQTYTILIHGWTSVSHPEKALICYDEMKAAGLIPDKPLYYCIVTSL 661

Query: 590 L 590
           L
Sbjct: 662 L 662



 Score = 46.6 bits (109), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 37/180 (20%), Positives = 71/180 (39%), Gaps = 7/180 (3%)

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASAL----- 566
           Y++++H+  +A    RA  +   M+  G+      YNI++D     RC   A  L     
Sbjct: 231 YSSIIHAYCKAGNMERAEALVADMEEQGLEATLGLYNILMD--GYARCHIEAQCLNVFHK 288

Query: 567 VSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE 626
           +   +  G  P  +TY  LI +    G   +AL     +  +GI  +   Y+ ++    +
Sbjct: 289 LKARIDTGLSPTAVTYGCLINLYTKLGKMMKALEFCKEMKAQGITLNRNTYSMLVDGYVQ 348

Query: 627 KGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
            G       + E M +  ++PD  T + +   +        A++ L  +  R     + T
Sbjct: 349 LGDFANAFSVFEDMSEAGIEPDWVTYNILLKAFCKSRQMTRAIQLLGRMKTRGCSPTIQT 408


>gi|162460542|ref|NP_001105869.1| pentatricopeptide repeat protein [Zea mays]
 gi|95931777|gb|ABF57644.1| pentatricopeptide repeat protein [Zea mays]
          Length = 886

 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/248 (23%), Positives = 113/248 (45%), Gaps = 12/248 (4%)

Query: 429 IRTYELLFSLFGNVNAPYEEGNMFSQVDSA-KRINAIEMDMARNNIQHSHISMKNLLKAL 487
           + TY +L S +G  N      N+F +  +    +N I      +NI H+H    N+ +A 
Sbjct: 321 VVTYSILISGYGKTNDAQSADNLFKEAKTKLDNLNGI----IYSNIIHAHCQSGNMDRA- 375

Query: 488 GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATY 547
             E ++RE+ +   D+   +    Y++++H     Q+  + + +F+++K CG  P   +Y
Sbjct: 376 --EELVREMEEDGIDAPIDV----YHSMMHGYTVVQDEKKCLIVFERLKECGFKPTIISY 429

Query: 548 NIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSL 607
             +I+    +     A A+   M   G      TY+ LI   +   DF  A ++ + +  
Sbjct: 430 GCLINLYVKVGKVPKAIAISKEMESHGIKHNNKTYSMLINGFIHLHDFANAFSIFEDMIK 489

Query: 608 EGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNS 667
            G+  D  +YN +++  C+ G +D    I E+M + ++QP   T   +  G+   G    
Sbjct: 490 SGLQPDRAIYNLLVEAFCKMGNMDRAIRIFERMQKERMQPSNRTFRPIIEGFAVAGDMKR 549

Query: 668 AMEALQVL 675
           A + L ++
Sbjct: 550 AFDTLDLM 557



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 78/374 (20%), Positives = 150/374 (40%), Gaps = 24/374 (6%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           +S++IHA  ++ N   AE+L+ +M+  G+      Y   +      +  +  + V + ++
Sbjct: 359 YSNIIHAHCQSGNMDRAEELVREMEEDGIDAPIDVYHSMMHGYTVVQDEKKCLIVFERLK 418

Query: 356 QNNLKP---QDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPE 412
           +   KP       +  L V+  K  +       ++      N K +S  +     +    
Sbjct: 419 ECGFKPTIISYGCLINLYVKVGKVPKAIAISKEMESHGIKHNNKTYSMLINGFIHLHDFA 478

Query: 413 RAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471
            A  IF  M +  L+PD   Y LL   F  +      GNM    D A RI      M + 
Sbjct: 479 NAFSIFEDMIKSGLQPDRAIYNLLVEAFCKM------GNM----DRAIRIFE---RMQKE 525

Query: 472 NIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPT---YNTVLHSLVEAQESHRA 528
            +Q S+ + + +++     G ++         +     PT   YN ++H LV   +  +A
Sbjct: 526 RMQPSNRTFRPIIEGFAVAGDMKRAFDTLDLMRRSGCAPTVMTYNALIHGLVRKHQVEKA 585

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
           + +  +M   GI PN  TY I++   +       A    + +   G       Y  L++ 
Sbjct: 586 VSVLDKMSIAGIAPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRA 645

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
               G    AL +   +S + IP +  +YN ++     +G +     +++QM ++ + P+
Sbjct: 646 CCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAADLLKQMKEDGIPPN 705

Query: 649 PSTCHFVFSGYVNC 662
             T    F+ Y+N 
Sbjct: 706 IHT----FTSYINA 715



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/160 (21%), Positives = 70/160 (43%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TY+ +++  +   +   A  IF+ M   G+ P+ A YN++++    +     A  +   M
Sbjct: 463 TYSMLINGFIHLHDFANAFSIFEDMIKSGLQPDRAIYNLLVEAFCKMGNMDRAIRIFERM 522

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
            ++   P   T+  +I+     GD   A + LDL+   G    V+ YN ++     K ++
Sbjct: 523 QKERMQPSNRTFRPIIEGFAVAGDMKRAFDTLDLMRRSGCAPTVMTYNALIHGLVRKHQV 582

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAME 670
           +    ++++M    + P+  T   +  GY   G    A E
Sbjct: 583 EKAVSVLDKMSIAGIAPNEHTYTIIMRGYAASGDIGKAFE 622



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 93/457 (20%), Positives = 166/457 (36%), Gaps = 69/457 (15%)

Query: 111 RMMEEKEIGLNNKCYLLMMQALCKGGYL---EEASNLIYFLGERY---GIYPILPVYNSF 164
           R MEE  I      Y  MM      GY    +E   LI F  ER    G  P +  Y   
Sbjct: 380 REMEEDGIDAPIDVYHSMMH-----GYTVVQDEKKCLIVF--ERLKECGFKPTIISYGCL 432

Query: 165 LGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK--- 221
           +    K+  +  A      M+S  +  N  TY+ L+   +   + +    I+ED IK   
Sbjct: 433 INLYVKVGKVPKAIAISKEMESHGIKHNNKTYSMLINGFIHLHDFANAFSIFEDMIKSGL 492

Query: 222 HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRL--DI 279
               +I++L   V +F ++ ++  A    + M    M      NRT    +    +  D+
Sbjct: 493 QPDRAIYNL--LVEAFCKMGNMDRAIRIFERMQKERMQPS---NRTFRPIIEGFAVAGDM 547

Query: 280 PIPLNALPVMK-----VLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGF 334
               + L +M+         +++ +IH   R      A  ++ +M   G+ P+ HTY   
Sbjct: 548 KRAFDTLDLMRRSGCAPTVMTYNALIHGLVRKHQVEKAVSVLDKMSIAGIAPNEHTYTII 607

Query: 335 IRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTN 394
           +R   +   +    E    ++++ LK       TL   C K+  +  A A+  ++S    
Sbjct: 608 MRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSF--- 664

Query: 395 PKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQ 454
                                       QK+  +   Y +L   +      +E  ++  Q
Sbjct: 665 ----------------------------QKIPRNTFIYNILIDGWARRGDVWEAADLLKQ 696

Query: 455 VDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNT 514
                    ++ D    NI H+  S  N     G       +IQ   D        T+ T
Sbjct: 697 ---------MKEDGIPPNI-HTFTSYINACCKAGDMQRAENVIQEMADVGLKPNVKTFTT 746

Query: 515 VLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI 551
           ++          RA++ F++MK+ G+ P+ A Y+ ++
Sbjct: 747 LIKGWARVSLPDRALKCFEEMKSAGLKPDEAAYHCLV 783



 Score = 52.4 bits (124), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 31/137 (22%), Positives = 59/137 (43%)

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
           + H A   F+ M+  GI PNA  +  ++   ++    + A + V  M  +G     +TY+
Sbjct: 266 DKHHARATFENMRARGIEPNAFVFTSLVHAYAVAGDMRGALSCVEEMKSEGIEMTVVTYS 325

Query: 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
            LI       D   A NL      +    + ++Y+ I+   C+ G +D  E ++ +M ++
Sbjct: 326 ILISGYGKTNDAQSADNLFKEAKTKLDNLNGIIYSNIIHAHCQSGNMDRAEELVREMEED 385

Query: 644 KVQPDPSTCHFVFSGYV 660
            +       H +  GY 
Sbjct: 386 GIDAPIDVYHSMMHGYT 402


>gi|71027557|ref|XP_763422.1| hypothetical protein [Theileria parva strain Muguga]
 gi|68350375|gb|EAN31139.1| hypothetical protein TP03_0402 [Theileria parva]
          Length = 596

 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 86/385 (22%), Positives = 162/385 (42%), Gaps = 46/385 (11%)

Query: 323 GLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI-MQQNNLKP------QDSTIATLSVECSK 375
           G+  SS   +G +R  +S   +R  + +L   +  N +KP      Q+  I+++ +  + 
Sbjct: 12  GISNSSTMTNGLVR--ISTYLVRVCIAILNFTVALNYVKPLLRSNHQNEEISSMLMMVAT 69

Query: 376 ALE----LDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIR 430
            L+    LD      ++ S   N   ++  L +C  +   +R ++I  K R   L P+I+
Sbjct: 70  RLDSRSKLDSFLTFCERTSILINEACYNVILDSCIKLKNNKRLLRIINKFRVWGLLPNIQ 129

Query: 431 TYELLFSLFGNVNAPYEEGNMFSQ------VDSAKRINAIEMDMARNNIQHSHISMKNLL 484
           T+ ++     + N  ++   +F Q       +    +N     +    +    ++  N +
Sbjct: 130 TFGIIIKTLSSSNLIHDCEELFYQYINSNGTNGVNGVNGANGSVTGGTVTSGTVTGGNQV 189

Query: 485 K---ALGAEGMIRELIQYFC-----------DS------------KTPLGTPTYNTVLHS 518
                  A  +    I Y C           DS            K    T  Y T++  
Sbjct: 190 SNPVTPSASTVTNNEIVYGCMFDAYVNNNSVDSAMRLFEDMKERGKVKPNTIMYTTLIKG 249

Query: 519 LVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQ 578
             + ++  +AM IF+ M+  G+ PN  TYN +ID C+ +    SA+ L+  M+  G  P 
Sbjct: 250 YGQNKQLDKAMRIFRLMQQDGVQPNTVTYNSVIDACARVGEMNSATRLLEEMLSSGIEPD 309

Query: 579 TMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIE 638
            +T++ +IK      D D++  LL ++   GI  DV+LYN++L+   + G + + E +  
Sbjct: 310 LITFSTIIKGYCVQSDMDKSFQLLSVMYERGIMPDVILYNSLLEGCVKSGLLWLCEKLWS 369

Query: 639 QMHQNKVQPDPSTCHFVFSGYVNCG 663
           QM +  + P   T   +   Y   G
Sbjct: 370 QMQEYNIPPSNFTLTILIKMYGRSG 394



 Score = 55.8 bits (133), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 55/266 (20%), Positives = 116/266 (43%), Gaps = 24/266 (9%)

Query: 312 AEQLMLQMQSLG-LQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLS 370
           A +L   M+  G ++P++  Y   I+    ++ L   M + ++MQQ+ ++P   T  ++ 
Sbjct: 223 AMRLFEDMKERGKVKPNTIMYTTLIKGYGQNKQLDKAMRIFRLMQQDGVQPNTVTYNSVI 282

Query: 371 VECSKALELDLAEALLDQ-ISRCTNPK--PFSAFLAACDTMDKPERAIKIFAKMRQK-LR 426
             C++  E++ A  LL++ +S    P    FS  +         +++ ++ + M ++ + 
Sbjct: 283 DACARVGEMNSATRLLEEMLSSGIEPDLITFSTIIKGYCVQSDMDKSFQLLSVMYERGIM 342

Query: 427 PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKA 486
           PD+  Y  L          +    ++SQ             M   NI  S+ ++  L+K 
Sbjct: 343 PDVILYNSLLEGCVKSGLLWLCEKLWSQ-------------MQEYNIPPSNFTLTILIKM 389

Query: 487 LGAEGMIRELIQYFCDS-----KTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIP 541
            G  G + ++ +   D         + T  Y  ++ + +   +    ++I+K MK  G+ 
Sbjct: 390 YGRSGQLDKVFE-LADELPKRYNFSINTHVYTCLMSACITNGKYSMVLDIYKYMKINGVK 448

Query: 542 PNAATYNIMIDCCSIIRCFKSASALV 567
           P+A T+  +I   S    FK A+ +V
Sbjct: 449 PDAKTFETIIQGLSRGSLFKEAAQVV 474



 Score = 43.5 bits (101), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 38/182 (20%), Positives = 80/182 (43%), Gaps = 40/182 (21%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIR---------------AIV 339
           +++ VI AC R      A +L+ +M S G++P   T+   I+               +++
Sbjct: 277 TYNSVIDACARVGEMNSATRLLEEMLSSGIEPDLITFSTIIKGYCVQSDMDKSFQLLSVM 336

Query: 340 SDRGL---------------RNGM-----EVLKIMQQNNLKPQDSTIATLSVECSKALEL 379
            +RG+               ++G+     ++   MQ+ N+ P + T+  L     ++ +L
Sbjct: 337 YERGIMPDVILYNSLLEGCVKSGLLWLCEKLWSQMQEYNIPPSNFTLTILIKMYGRSGQL 396

Query: 380 D----LAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMR-QKLRPDIRTYEL 434
           D    LA+ L  + +   N   ++  ++AC T  K    + I+  M+   ++PD +T+E 
Sbjct: 397 DKVFELADELPKRYNFSINTHVYTCLMSACITNGKYSMVLDIYKYMKINGVKPDAKTFET 456

Query: 435 LF 436
           + 
Sbjct: 457 II 458



 Score = 40.8 bits (94), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 62/273 (22%), Positives = 113/273 (41%), Gaps = 35/273 (12%)

Query: 112 MMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKL 171
           M E  ++  N   Y  +++   +   L++A   I+ L ++ G+ P    YNS + ACA++
Sbjct: 230 MKERGKVKPNTIMYTTLIKGYGQNKQLDKAMR-IFRLMQQDGVQPNTVTYNSVIDACARV 288

Query: 172 HSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKN-------LSAVHE--IWEDYIKH 222
             M  A   L+ M S  +  + +T++ ++K    Q +       LS ++E  I  D I +
Sbjct: 289 GEMNSATRLLEEMLSSGIEPDLITFSTIIKGYCVQSDMDKSFQLLSVMYERGIMPDVILY 348

Query: 223 YSLSIFSLRK-FVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPI 281
            SL    ++   +W   +L      Y        L ++ K+Y         RS +LD   
Sbjct: 349 NSLLEGCVKSGLLWLCEKLWSQMQEYNIPPSNFTLTILIKMY--------GRSGQLDKVF 400

Query: 282 PL-NALPVMKVLRWSFSDVIH-------ACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDG 333
            L + LP     R++FS   H       AC       +   +   M+  G++P + T++ 
Sbjct: 401 ELADELPK----RYNFSINTHVYTCLMSACITNGKYSMVLDIYKYMKINGVKPDAKTFET 456

Query: 334 FIRAIVSDRGLRNG----MEVLKIMQQNNLKPQ 362
            I+ +      +      MEV  +   NN + Q
Sbjct: 457 IIQGLSRGSLFKEAAQVVMEVYSLSNSNNGEAQ 489


>gi|18424537|ref|NP_568948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170898|sp|Q9FIT7.1|PP442_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g61990, mitochondrial; Flags: Precursor
 gi|10176917|dbj|BAB10161.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010163|gb|AED97546.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 974

 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 111/601 (18%), Positives = 239/601 (39%), Gaps = 83/601 (13%)

Query: 108 ETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERY--------------- 152
           + ++ M E+ +  + K Y +++ A C+ G ++   ++++   + +               
Sbjct: 207 DVYKGMVERNVVFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEKEFRTATLNVDGALKLKE 266

Query: 153 -----GIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQK 207
                G+ P+   Y+  +    K+  +  A   L  MDS  V  +  TY+ L+   +  +
Sbjct: 267 SMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGR 326

Query: 208 NLSAVHEIWEDYIKH-YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMM--GKLYI 264
           N  A   +  + + H  ++  +     +   ++   ++ A      M+A  ++   + Y 
Sbjct: 327 NADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYA 386

Query: 265 NRTSEGRLRSSRLDIPIPLNALPVMK-----VLRWSFSDVIHACGRTQNSGLAEQLMLQM 319
           +   EG  R   +     L  L  MK     +  +++  V+     + +   A  ++ +M
Sbjct: 387 SLI-EGYCREKNVRQGYEL--LVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEM 443

Query: 320 QSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALEL 379
            + G +P+   Y   I+  + +    + M VLK M++  + P      +L +  SKA  +
Sbjct: 444 IASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRM 503

Query: 380 DLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLF 439
           D A + L ++                               +   L+P+  TY       
Sbjct: 504 DEARSFLVEM-------------------------------VENGLKPNAFTY------- 525

Query: 440 GNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQY 499
           G   + Y E + F+  D   +      +M    +  + +    L+     +G + E    
Sbjct: 526 GAFISGYIEASEFASADKYVK------EMRECGVLPNKVLCTGLINEYCKKGKVIEACSA 579

Query: 500 F---CDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSI 556
           +    D        TY  +++ L +  +   A EIF++M+  GI P+  +Y ++I+  S 
Sbjct: 580 YRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSK 639

Query: 557 IRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLL 616
           +   + AS++   MV +G  P  + Y  L+      G+ ++A  LLD +S++G+  + + 
Sbjct: 640 LGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVT 699

Query: 617 YNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVN-CGFHNSAMEALQVL 675
           Y TI+   C+ G +     + ++M    + PD     FV++  V+ C   N    A+ + 
Sbjct: 700 YCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPD----SFVYTTLVDGCCRLNDVERAITIF 755

Query: 676 S 676
            
Sbjct: 756 G 756



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 132/634 (20%), Positives = 242/634 (38%), Gaps = 90/634 (14%)

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
           M+   + L+N  Y L++  L KG   + A  L++ +   +GI     +Y+  +   +K  
Sbjct: 303 MDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEM-VSHGINIKPYMYDCCICVMSKEG 361

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK-HYSLSIFSLR 231
            M  A    D M +  +      Y  L++    +KN+   +E+  +  K +  +S ++  
Sbjct: 362 VMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYG 421

Query: 232 KFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRT-SEGRLRSSRLDIPIPLNALPVMK 290
             V       DL  AY  ++ M+A      + I  T  +  L++SR       +A+ V+K
Sbjct: 422 TVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFG-----DAMRVLK 476

Query: 291 VLR--------WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDR 342
            ++        + ++ +I    + +    A   +++M   GL+P++ TY  FI   +   
Sbjct: 477 EMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEAS 536

Query: 343 GLRNGMEVLKIMQQNNLKPQDSTIATLSVE-CSKALELDLAEA---LLDQISRCTNPKPF 398
              +  + +K M++  + P       L  E C K   ++   A   ++DQ     + K +
Sbjct: 537 EFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQ-GILGDAKTY 595

Query: 399 SAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELL---FSLFGNVNAP-------YE 447
           +  +      DK + A +IF +MR K + PD+ +Y +L   FS  GN+           E
Sbjct: 596 TVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVE 655

Query: 448 EG--------NM----FSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRE 495
           EG        NM    F +    ++   +  +M+   +  + ++   ++      G + E
Sbjct: 656 EGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAE 715

Query: 496 LIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIF-KQMKTCGIP---------- 541
             + F + K     P    Y T++       +  RA+ IF    K C             
Sbjct: 716 AFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALINW 775

Query: 542 ---------------------------PNAATYNIMIDCCSIIRCFKSASALVSMMVRDG 574
                                      PN  TYNIMID        ++A  L   M    
Sbjct: 776 VFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNAN 835

Query: 575 FYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIE 634
             P  +TYT+L+      G   E   + D     GI  D ++Y+ I+    ++G      
Sbjct: 836 LMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKAL 895

Query: 635 FIIEQMHQNKVQPDP-----STCHFVFSGYVNCG 663
            +++QM       D      STC  + SG+   G
Sbjct: 896 VLVDQMFAKNAVDDGCKLSISTCRALLSGFAKVG 929



 Score = 66.6 bits (161), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 82/374 (21%), Positives = 147/374 (39%), Gaps = 51/374 (13%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A+ L   M + GL P +  Y   I     ++ +R G E+L  M++ N+     T  T+  
Sbjct: 366 AKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVK 425

Query: 372 ECSKALELDLAEALLDQI--SRC-TNPKPFSAFLAACDTMDKPERAIKIFAKMR-QKLRP 427
               + +LD A  ++ ++  S C  N   ++  +       +   A+++  +M+ Q + P
Sbjct: 426 GMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAP 485

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL 487
           DI  Y                 ++   +  AKR     MD AR+ +      ++N LK  
Sbjct: 486 DIFCYN----------------SLIIGLSKAKR-----MDEARSFLVEM---VENGLKP- 520

Query: 488 GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATY 547
                                  TY   +   +EA E   A +  K+M+ CG+ PN    
Sbjct: 521 --------------------NAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLC 560

Query: 548 NIMI-DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVS 606
             +I + C   +  ++ SA  SM V  G      TYT L+  L      D+A  +   + 
Sbjct: 561 TGLINEYCKKGKVIEACSAYRSM-VDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMR 619

Query: 607 LEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHN 666
            +GI  DV  Y  ++    + G +     I ++M +  + P+    + +  G+   G   
Sbjct: 620 GKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIE 679

Query: 667 SAMEALQVLSMRML 680
            A E L  +S++ L
Sbjct: 680 KAKELLDEMSVKGL 693



 Score = 60.1 bits (144), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/177 (23%), Positives = 75/177 (42%), Gaps = 6/177 (3%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
            Y +++      +   +  E+  +MK   I  +  TY  ++           A  +V  M
Sbjct: 384 AYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEM 443

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           +  G  P  + YT LIK  L    F +A+ +L  +  +GI  D+  YN+++    +  R+
Sbjct: 444 IASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRM 503

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSA------MEALQVLSMRMLC 681
           D     + +M +N ++P+  T     SGY+      SA      M    VL  ++LC
Sbjct: 504 DEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLC 560



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 74/362 (20%), Positives = 137/362 (37%), Gaps = 42/362 (11%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           AE++  +M+  G+ P   +Y   I        ++    +   M +  L P       L  
Sbjct: 611 AEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLG 670

Query: 372 ECSKALELDLAEALLDQIS-RCTNPKPFS---AFLAACDTMDKPERAIKIFAKMRQK-LR 426
              ++ E++ A+ LLD++S +  +P   +        C + D  E A ++F +M+ K L 
Sbjct: 671 GFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAE-AFRLFDEMKLKGLV 729

Query: 427 PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHIS------- 479
           PD   Y  L                   VD   R+N +E  +          +       
Sbjct: 730 PDSFVYTTL-------------------VDGCCRLNDVERAITIFGTNKKGCASSTAPFN 770

Query: 480 -MKNLLKALGAEGMIRELIQYFCD-SKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQ 534
            + N +   G   +  E++    D S    G P   TYN ++  L +      A E+F Q
Sbjct: 771 ALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQ 830

Query: 535 MKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGD 594
           M+   + P   TY  +++    +        +    +  G  P  + Y+ +I   L  G 
Sbjct: 831 MQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGM 890

Query: 595 FDEALNLLDLVSL-----EGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649
             +AL L+D +       +G    +     +L    + G ++V E ++E M + +  PD 
Sbjct: 891 TTKALVLVDQMFAKNAVDDGCKLSISTCRALLSGFAKVGEMEVAEKVMENMVRLQYIPDS 950

Query: 650 ST 651
           +T
Sbjct: 951 AT 952


>gi|359473521|ref|XP_002273398.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Vitis vinifera]
          Length = 755

 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 115/553 (20%), Positives = 210/553 (37%), Gaps = 86/553 (15%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y +M+  LCK G LE A +L   + E  G  P +  YNS +    KL  +       + M
Sbjct: 258 YNIMIDYLCKEGDLEMARSLFTQMKEA-GFTPDIVTYNSLIDGHGKLGLLDECICIFEQM 316

Query: 185 DSRMVGKNEVTYTELL----KLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRL 240
                  + +TY  L+    K     K    +HE+  + +K    ++ +   F+ +F + 
Sbjct: 317 KDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKP---NVVTYSTFIDAFCKE 373

Query: 241 RDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVI 300
             L+ A +    M  +A+                                   ++++ +I
Sbjct: 374 GMLQEAIKFFVDMRRVALTPN-------------------------------EFTYTSLI 402

Query: 301 HACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLK 360
            A  +  N   A +L+ ++   G++ +  TY   +  +  +  ++   EV + M    + 
Sbjct: 403 DANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVA 462

Query: 361 PQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAK 420
           P   T   L     KA E++ A+ +L ++                      E+ IK    
Sbjct: 463 PNQETYTALVHGFIKAKEMEYAKDILKEMK---------------------EKCIK---- 497

Query: 421 MRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISM 480
                 PD+  Y  +  L+G  N         S+++ AK +     ++  + I  + +  
Sbjct: 498 ------PDLLLYGTI--LWGLCNE--------SRLEEAKLLIG---EIKESGINTNAVIY 538

Query: 481 KNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKT 537
             L+ A    G   E   L++   D        TY  ++  L ++     AM  F +M  
Sbjct: 539 TTLMDAYFKSGQATEALTLLEEMLDLGLIATEVTYCALIDGLCKSGLVQEAMHHFGRMSE 598

Query: 538 CGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDE 597
            G+ PN A Y  ++D      CF+ A  L   M+  G  P  + YTALI   + +G+  E
Sbjct: 599 IGLQPNVAVYTALVDGLCKNNCFEVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQE 658

Query: 598 ALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFS 657
           ALNL D +   G+  D+  Y  ++      G++     ++++M    V PD      +  
Sbjct: 659 ALNLRDRMIEIGMELDLHAYTALIWGLSHSGQVQKARNLLDEMIGKGVLPDEVVYMCLIK 718

Query: 658 GYVNCGFHNSAME 670
            Y   G  + A+E
Sbjct: 719 KYYALGKVDEALE 731



 Score = 82.8 bits (203), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 80/395 (20%), Positives = 158/395 (40%), Gaps = 48/395 (12%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           S + ++H   +     L+ +    M + G++ S  TY+  I  +  +  L     +   M
Sbjct: 222 SCNALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQM 281

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERA 414
           ++    P   T  +L     K   LD    + +Q+             A CD        
Sbjct: 282 KEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKD-----------ADCD-------- 322

Query: 415 IKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQ 474
                       PD+ TY  L              N F + +   +      +M  N ++
Sbjct: 323 ------------PDVITYNALI-------------NCFCKFERMPKAFEFLHEMKANGLK 357

Query: 475 HSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEI 531
            + ++    + A   EGM++E I++F D +    TP   TY +++ +  +A     A+++
Sbjct: 358 PNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKL 417

Query: 532 FKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLD 591
            +++   GI  N  TY  ++D        K A  +   M+  G  P   TYTAL+   + 
Sbjct: 418 VEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIK 477

Query: 592 YGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
             + + A ++L  +  + I  D+LLY TIL   C + R++  + +I ++ ++ +  +   
Sbjct: 478 AKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVI 537

Query: 652 CHFVFSGYVNCGFHNSAMEAL-QVLSMRMLCEEVS 685
              +   Y   G    A+  L ++L + ++  EV+
Sbjct: 538 YTTLMDAYFKSGQATEALTLLEEMLDLGLIATEVT 572



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 115/289 (39%), Gaps = 26/289 (8%)

Query: 398 FSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVD 456
           F A  +A   +   E A + F KMR+ ++ P  R+   L      V         F  + 
Sbjct: 188 FDALFSALIELGMLEEASECFLKMRKFRVFPKPRSCNALLHRLSKVGRGDLSRKFFKDMG 247

Query: 457 SAKRINAI--------------EMDMARN--------NIQHSHISMKNLLKALGAEGMIR 494
           +A    ++              +++MAR+              ++  +L+   G  G++ 
Sbjct: 248 AAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLD 307

Query: 495 ELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI 551
           E I  F   K     P   TYN +++   + +   +A E   +MK  G+ PN  TY+  I
Sbjct: 308 ECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFI 367

Query: 552 DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIP 611
           D        + A      M R    P   TYT+LI      G+  EAL L++ +   GI 
Sbjct: 368 DAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIK 427

Query: 612 HDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYV 660
            +V+ Y  +L   CE+GR+   E +   M    V P+  T   +  G++
Sbjct: 428 LNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFI 476



 Score = 45.8 bits (107), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 35/155 (22%), Positives = 62/155 (40%), Gaps = 4/155 (2%)

Query: 508 GTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALV 567
           G   ++ +  +L+E      A E F +M+   + P   + N ++   S +     +    
Sbjct: 184 GFGVFDALFSALIELGMLEEASECFLKMRKFRVFPKPRSCNALLHRLSKVGRGDLSRKFF 243

Query: 568 SMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEK 627
             M   G      TY  +I  L   GD + A +L   +   G   D++ YN+++    + 
Sbjct: 244 KDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKL 303

Query: 628 GRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNC 662
           G +D    I EQM      PD  T    ++  +NC
Sbjct: 304 GLLDECICIFEQMKDADCDPDVIT----YNALINC 334


>gi|428186270|gb|EKX55120.1| hypothetical protein GUITHDRAFT_53115, partial [Guillardia theta
           CCMP2712]
          Length = 363

 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/315 (21%), Positives = 133/315 (42%), Gaps = 20/315 (6%)

Query: 324 LQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAE 383
           L+P + T+   I A       +  M +   M+   ++P + T A L   C K  ++  A 
Sbjct: 59  LRPDTVTFSTAISACAKGGEWQRAMNMYHEMEAQGIEPNEFTFAALITACEKGGQVSKAF 118

Query: 384 ALLDQISR---CTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLF 439
            + +++       N   F+A +++C+ +   +RA+K+  +M  K ++P+++ Y    S  
Sbjct: 119 EVFERMQARGIVGNVYTFTAAISSCEKLGDWQRALKLLEEMIAKGIQPNLQAYSAAIS-- 176

Query: 440 GNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQY 499
                         +   A+    +   M    I+   I    ++ A G  G+     + 
Sbjct: 177 -----------ACEKAAEARPALGLLERMTNEKIKPDIIVYSAVMAACGKAGLWEPAARI 225

Query: 500 FCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSI 556
           F   K    TP    Y+T++ +   A E  RA+E+F+ M+  G+ PN   Y   I  C+ 
Sbjct: 226 FQKMKREGLTPDVVAYSTLIQAYQRAGEWSRALEVFQLMEKAGVRPNVIAYTEAIAACAK 285

Query: 557 IRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLL 616
              ++ +  L+  M  D   P  + Y  +I  L   G +D  L LL ++  +    ++  
Sbjct: 286 AGEWRRSLGLLERMKADKLRPDAVAYNFVISALSRGGQWDAGLTLLQMLEEDEAQPNIST 345

Query: 617 YNTILKKACEKGRID 631
           Y T++K   + G+ +
Sbjct: 346 YCTVIKACGDNGQWE 360



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/312 (21%), Positives = 129/312 (41%), Gaps = 20/312 (6%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +FS  I AC +      A  +  +M++ G++P+  T+   I A      +    EV + M
Sbjct: 65  TFSTAISACAKGGEWQRAMNMYHEMEAQGIEPNEFTFAALITACEKGGQVSKAFEVFERM 124

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNP--KPFSAFLAACDTMDKP 411
           Q   +     T       C K  +   A  LL++ I++   P  + +SA ++AC+   + 
Sbjct: 125 QARGIVGNVYTFTAAISSCEKLGDWQRALKLLEEMIAKGIQPNLQAYSAAISACEKAAEA 184

Query: 412 ERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
             A+ +  +M  +K++PDI  Y  + +  G          +F +             M R
Sbjct: 185 RPALGLLERMTNEKIKPDIIVYSAVMAACGKAGLWEPAARIFQK-------------MKR 231

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHR 527
             +    ++   L++A    G     ++ F   +     P    Y   + +  +A E  R
Sbjct: 232 EGLTPDVVAYSTLIQAYQRAGEWSRALEVFQLMEKAGVRPNVIAYTEAIAACAKAGEWRR 291

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           ++ + ++MK   + P+A  YN +I   S    + +   L+ M+  D   P   TY  +IK
Sbjct: 292 SLGLLERMKADKLRPDAVAYNFVISALSRGGQWDAGLTLLQMLEEDEAQPNISTYCTVIK 351

Query: 588 ILLDYGDFDEAL 599
              D G +++AL
Sbjct: 352 ACGDNGQWEKAL 363



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 73/374 (19%), Positives = 156/374 (41%), Gaps = 56/374 (14%)

Query: 314 QLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGME----VLKIMQQN-----NLKPQDS 364
           +++  ++  GL P+  +Y+  + A+  +   R  +     V    ++N     +L+P   
Sbjct: 5   EVLKSIEKEGLTPTRVSYNAAMSALTRNGRWREALSMFDSVFSQTERNKVAARSLRPDTV 64

Query: 365 TIATLSVECSKALELDLAEALLDQI-SRCTNPK--PFSAFLAACDTMDKPERAIKIFAKM 421
           T +T    C+K  E   A  +  ++ ++   P    F+A + AC+   +  +A ++F +M
Sbjct: 65  TFSTAISACAKGGEWQRAMNMYHEMEAQGIEPNEFTFAALITACEKGGQVSKAFEVFERM 124

Query: 422 RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMK 481
           + +             + GNV          + + S +++                   +
Sbjct: 125 QAR------------GIVGNVY------TFTAAISSCEKLG----------------DWQ 150

Query: 482 NLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIP 541
             LK L  E MI + IQ    +        Y+  + +  +A E+  A+ + ++M    I 
Sbjct: 151 RALKLL--EEMIAKGIQPNLQA--------YSAAISACEKAAEARPALGLLERMTNEKIK 200

Query: 542 PNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNL 601
           P+   Y+ ++  C     ++ A+ +   M R+G  P  + Y+ LI+     G++  AL +
Sbjct: 201 PDIIVYSAVMAACGKAGLWEPAARIFQKMKREGLTPDVVAYSTLIQAYQRAGEWSRALEV 260

Query: 602 LDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVN 661
             L+   G+  +V+ Y   +    + G       ++E+M  +K++PD    +FV S    
Sbjct: 261 FQLMEKAGVRPNVIAYTEAIAACAKAGEWRRSLGLLERMKADKLRPDAVAYNFVISALSR 320

Query: 662 CGFHNSAMEALQVL 675
            G  ++ +  LQ+L
Sbjct: 321 GGQWDAGLTLLQML 334


>gi|302799687|ref|XP_002981602.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
 gi|300150768|gb|EFJ17417.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
          Length = 628

 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 95/429 (22%), Positives = 171/429 (39%), Gaps = 50/429 (11%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           ++++  + A  +     LA +   QMQ  G  P   TY   +R +     L    E+L  
Sbjct: 39  FTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDFTYSIVLRGLCKAGELDKAKELLGQ 98

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR------------------CTNP 395
           ++++ +K    T + +   C KA  +D A  +   +S                   C+  
Sbjct: 99  LRESGVKLNVITYSVVIDGCCKASRVDDALEIFKTMSAGGGCVPDVVTFNSLLKGLCSGE 158

Query: 396 KPFSAFL-------AAC-----------DTMDKPER---AIKIFAKMRQK-LRPDIRTYE 433
           +   AF+       A C           D + K  R   A +++ +M +K   PD+  Y 
Sbjct: 159 RMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAYT 218

Query: 434 LLFSLFGNVNAPYEEGNMFSQ-VDSAKRINAIEMDMARNNI---QHSHISMKNLLKALGA 489
              +     N   E  +   + V    + +A+        +    H+  +   +++ L  
Sbjct: 219 SFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTVIGILCKKGHAEEAQNQMIEHLCR 278

Query: 490 EGMIRELIQYF---CDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCG---IPPN 543
            GM+ E  + F        P     +NT++H++ +++     + +F++MK+      PPN
Sbjct: 279 SGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPN 338

Query: 544 AATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLD 603
             TYNIM+D     +    A  LV+ M   G  P  +TY+AL+  L   G  D A +LL+
Sbjct: 339 LETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLE 398

Query: 604 LVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
            +S EG+  D     +IL    + G++D     +E M      PD  T + +  G    G
Sbjct: 399 EMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGLCKAG 458

Query: 664 FHNSAMEAL 672
             + A+  L
Sbjct: 459 RIDEAITFL 467



 Score = 87.0 bits (214), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 99/470 (21%), Positives = 186/470 (39%), Gaps = 55/470 (11%)

Query: 216 WEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMV----------------ALAMM 259
           W    K Y  S+F+   F+ +  +    + AYE  Q M                  L   
Sbjct: 27  WLGRQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDFTYSIVLRGLCKA 86

Query: 260 GKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQM 319
           G+L   +   G+LR S     + LN +        ++S VI  C +      A ++   M
Sbjct: 87  GELDKAKELLGQLRES----GVKLNVI--------TYSVVIDGCCKASRVDDALEIFKTM 134

Query: 320 QSLG-LQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALE 378
            + G   P   T++  ++ + S   +     + + M +   +P   + +TL     KA  
Sbjct: 135 SAGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGR 194

Query: 379 LDLAEALLDQ-ISRCTNPK--PFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYEL 434
           LD A  L ++ + +   P    +++F+      ++   A     KM  K  + D   +  
Sbjct: 195 LDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFST 254

Query: 435 LFSLFGNVNAPYEEGNMF-------SQVDSAKRINAIEMDMARNN---------IQHSHI 478
           +  +        E  N           +D A      E  ++RN+         + H+  
Sbjct: 255 VIGILCKKGHAEEAQNQMIEHLCRSGMLDEA--CKTFEEMISRNHPPSAELFNTLIHAVC 312

Query: 479 SMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTC 538
             K L   +     ++ + +++C    P    TYN ++ +L +A++   A E+  +M   
Sbjct: 313 KSKRLPDGVLLFQRMKSMKEFYC----PPNLETYNIMVDNLCKAKQLDEAQELVNEMANY 368

Query: 539 GIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEA 598
           G+ P+  TY+ ++D    +     A  L+  M ++G +P + T  +++  L   G  D A
Sbjct: 369 GLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYA 428

Query: 599 LNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
           L+ L+ +   G   D++ YNT+L   C+ GRID     + +M   K  PD
Sbjct: 429 LSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPD 478



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 108/574 (18%), Positives = 224/574 (39%), Gaps = 77/574 (13%)

Query: 88  DDFFH--ILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLI 145
           DDF +  +L    ++ +     E    + E  + LN   Y +++   CK   +++A  + 
Sbjct: 72  DDFTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEIF 131

Query: 146 YFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVW 205
             +    G  P +  +NS L        M  A +  + M       N ++Y+ LL     
Sbjct: 132 KTMSAGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCK 191

Query: 206 QKNLSAVHEIWEDYIKHYSL-SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYI 264
              L     +WE+ ++   +  + +   FV    +   +  A +  + MV          
Sbjct: 192 AGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVT--------- 242

Query: 265 NRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQ------ 318
                   + S+ D                +FS VI    +  ++  A+  M++      
Sbjct: 243 --------KGSKADA--------------VAFSTVIGILCKKGHAEEAQNQMIEHLCRSG 280

Query: 319 -----------MQSLGLQPSSHTYDGFIRAIVSDRGLRNGM---EVLKIMQQNNLKPQDS 364
                      M S    PS+  ++  I A+   + L +G+   + +K M++    P   
Sbjct: 281 MLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLE 340

Query: 365 TIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKPERAIKIFAKM 421
           T   +     KA +LD A+ L+++++      +   +SA +     + K +RA  +  +M
Sbjct: 341 TYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEM 400

Query: 422 -RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISM 480
            ++ + PD       F+    +NA  + G    +VD A  ++ +E   AR +     ++ 
Sbjct: 401 SKEGVFPDS------FTDASILNALSKAG----KVDYA--LSHLETMKARGSTP-DLVTY 447

Query: 481 KNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKT 537
             LL  L   G I E I +         TP   +Y  ++ +L  + ++  A  IF++M  
Sbjct: 448 NTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVK 507

Query: 538 CGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDE 597
            G+ P+   Y+ ++D   + R      AL  ++      P  + +  ++  L   G  ++
Sbjct: 508 RGVLPDTVLYHSLLD--GLARNGLEDLAL-ELLKTSLCKPDFVMHKMVVDGLCKAGKAED 564

Query: 598 ALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
           A  +++ ++  G P D   Y  +++   + G++D
Sbjct: 565 ACEVVERMADAGFPADAFTYINVVRGLRKLGKVD 598



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 92/419 (21%), Positives = 155/419 (36%), Gaps = 76/419 (18%)

Query: 323 GLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLA 382
           G Q S  TY+ F+ A+      +   E  + MQ+    P D T + +     KA ELD A
Sbjct: 33  GYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDFTYSIVLRGLCKAGELDKA 92

Query: 383 EALLDQISRCT---NPKPFSAFLAACDTMDKPERAIKIFAKMRQK--LRPDIRTYELLFS 437
           + LL Q+       N   +S  +  C    + + A++IF  M       PD+ T+  L  
Sbjct: 93  KELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEIFKTMSAGGGCVPDVVTFNSLLK 152

Query: 438 LFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRE-- 495
              +     E   +F               MA+   + + IS   LL  L   G + E  
Sbjct: 153 GLCSGERMSEAFVLFEY-------------MAKAGCEPNVISYSTLLDGLCKAGRLDEAC 199

Query: 496 --------------LIQYF---------------CDSKTPLGTP-------TYNTVLHSL 519
                         L+ Y                CD    + T         ++TV+  L
Sbjct: 200 RLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTVIGIL 259

Query: 520 VE---AQESHRAM--------------EIFKQMKTCGIPPNAATYNIMIDC-CSIIRCFK 561
            +   A+E+   M              + F++M +   PP+A  +N +I   C   R   
Sbjct: 260 CKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPD 319

Query: 562 SASALVSMMVRDGFY--PQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNT 619
                  M     FY  P   TY  ++  L      DEA  L++ ++  G+  DV+ Y+ 
Sbjct: 320 GVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSA 379

Query: 620 ILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678
           ++   C+ G++D    ++E+M +  V PD  T   + +     G  + A+  L+ +  R
Sbjct: 380 LVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKAR 438



 Score = 45.8 bits (107), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 74/333 (22%), Positives = 132/333 (39%), Gaps = 49/333 (14%)

Query: 39  TLTTTMG-LNEESISKATQMQIVDALCR-GERSRASHLLLNLGHAHHSLGADDF---FHI 93
             +T +G L ++  ++  Q Q+++ LCR G    A      +   +H   A+ F    H 
Sbjct: 251 AFSTVIGILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHA 310

Query: 94  LNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYG 153
           +    R PD + + +  + M+E     N + Y +M+  LCK   L+EA  L+  +   YG
Sbjct: 311 VCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMA-NYG 369

Query: 154 IYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVH 213
           + P +  Y++ +    KL  +  A   L+ M    V  +  T   +L        LS   
Sbjct: 370 LSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASIL------NALSKAG 423

Query: 214 EIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLR 273
           ++       Y+LS     K   S   L      Y TL                  +G  +
Sbjct: 424 KV------DYALSHLETMKARGSTPDL----VTYNTLL-----------------DGLCK 456

Query: 274 SSRLDIPIPLNALPVMKVLR---WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHT 330
           + R+D  I   A  V        +S++ +I A  R+  +  A  +  +M   G+ P +  
Sbjct: 457 AGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGVLPDTVL 516

Query: 331 YDGFIRAIVSDRGLRNGME--VLKIMQQNNLKP 361
           Y   +  +      RNG+E   L++++ +  KP
Sbjct: 517 YHSLLDGLA-----RNGLEDLALELLKTSLCKP 544


>gi|242092396|ref|XP_002436688.1| hypothetical protein SORBIDRAFT_10g007070 [Sorghum bicolor]
 gi|241914911|gb|EER88055.1| hypothetical protein SORBIDRAFT_10g007070 [Sorghum bicolor]
          Length = 551

 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 81/365 (22%), Positives = 158/365 (43%), Gaps = 30/365 (8%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
            F ++I A G+ +   L   L+  M+  GL  S  T+   +R     R ++  +E  + M
Sbjct: 167 GFHNLIEALGKIKQFKLVWSLVETMRCRGLL-SKDTFKLIVRRYARARKVKEAVETFEKM 225

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR----CTNPKPFSAFLAACDTMDK 410
               LK + S    L    SK+ ++  A+A+  ++ R      + K ++  +        
Sbjct: 226 SIFGLKTELSDYNWLIDTLSKSKQVKKAQAIYKEMKRKGKFVPDLKTYTVLMEGWGH--- 282

Query: 411 PERAIKIFAKMRQKL-----RPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIE 465
            E+ + +   M Q++     RPD+  Y +L S F       E   +F +++         
Sbjct: 283 -EKDLLMVKTMYQEMIDAGIRPDVVAYGMLISAFCKSGKCDEAIKVFYEME--------- 332

Query: 466 MDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKT---PLGTPTYNTVLHSLVEA 522
              A   +   H+    L+  LG+E  + E ++YF   K    P+  PT N V+ +   A
Sbjct: 333 ---ASGCMPSPHVYCM-LINGLGSEERLDEALKYFEQYKKSGFPMEVPTCNAVVGAYCRA 388

Query: 523 QESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTY 582
            +   A ++  +M+ C I PN+ TY++++      + F+ A  +   M  DG  PQ  TY
Sbjct: 389 SKFEHAFKMVDEMRECKIGPNSRTYDVILHYLIKSQKFEEAYNVFQRMGMDGCEPQLNTY 448

Query: 583 TALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642
           T ++ +    G  D ALN+   +   G+   + +++ ++   C + R++      ++M  
Sbjct: 449 TMMVGMFCSNGRVDMALNVWKQMGERGVLPCMHMFSALINGLCFENRLEEACVYFQEMLD 508

Query: 643 NKVQP 647
             ++P
Sbjct: 509 KGIRP 513



 Score = 45.8 bits (107), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 30/142 (21%), Positives = 57/142 (40%), Gaps = 2/142 (1%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC-CSIIRCFKSASALVSM 569
           TY  ++      ++      ++++M   GI P+   Y ++I   C   +C ++      M
Sbjct: 272 TYTVLMEGWGHEKDLLMVKTMYQEMIDAGIRPDVVAYGMLISAFCKSGKCDEAIKVFYEM 331

Query: 570 MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
               G  P    Y  LI  L      DEAL   +     G P +V   N ++   C   +
Sbjct: 332 EA-SGCMPSPHVYCMLINGLGSEERLDEALKYFEQYKKSGFPMEVPTCNAVVGAYCRASK 390

Query: 630 IDVIEFIIEQMHQNKVQPDPST 651
            +    ++++M + K+ P+  T
Sbjct: 391 FEHAFKMVDEMRECKIGPNSRT 412


>gi|357502217|ref|XP_003621397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496412|gb|AES77615.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 550

 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 84/382 (21%), Positives = 158/382 (41%), Gaps = 53/382 (13%)

Query: 304 GRTQNSGLAEQLMLQ--MQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKP 361
           G   N  L E L     + +LG      +Y   I  +      R  +++LK ++   L  
Sbjct: 138 GICLNGKLKEALHFHDHVIALGFHLDQVSYRTLINGLCKIGETRAALQMLKKIE-GKLVN 196

Query: 362 QDSTIATLSVE--CSKALELDLAEALLDQISRCTNPK--PFSAFLAACDTMDKPERAIKI 417
            D  +  + +   C      D  +   + I++  +P    F++ +     + + + A  +
Sbjct: 197 TDVVMYNIIINSLCKDKAVSDAYQLYSEMITKRISPDVVTFNSLILGFCVVGQLKEAFGL 256

Query: 418 FAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHS 476
           F +M  K + PD+ T+ +L      V+A  ++GN+                         
Sbjct: 257 FHEMVLKNINPDVYTFSIL------VDALCKDGNI------------------------- 285

Query: 477 HISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMK 536
               KN+L  +  +G+I +++             TY++++       E ++A  +F  M 
Sbjct: 286 -TRAKNMLAVMMKQGVIPDVV-------------TYSSLMDGYCLVNEVNKAKHVFSTMS 331

Query: 537 TCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFD 596
             G+ P+A +YNIMI+    I+    A +L   M   G  P T+TY +LI  L   G   
Sbjct: 332 RLGVAPHAHSYNIMINGLGKIKMVDEALSLFKEMCCKGIAPDTVTYNSLIDGLCKLGRIS 391

Query: 597 EALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVF 656
            A  L+D +   GIP D+L YN+++   C+   ID    +++++    +QP   T + + 
Sbjct: 392 YAWQLVDEMHNNGIPADILTYNSLIDVLCKNHHIDKAIALVKKIKDQGIQPSMYTYNILI 451

Query: 657 SGYVNCGFHNSAMEALQVLSMR 678
            G    G   +A +  Q L ++
Sbjct: 452 DGLCKGGRLKNAQDVFQDLLIK 473



 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 85/366 (23%), Positives = 153/366 (41%), Gaps = 24/366 (6%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           S+  +I+   +   +  A Q++ +++   +      Y+  I ++  D+ + +  ++   M
Sbjct: 166 SYRTLINGLCKIGETRAALQMLKKIEGKLVNTDVVMYNIIINSLCKDKAVSDAYQLYSEM 225

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALL-DQISRCTNPK--PFSAFLAACDTMDKP 411
               + P   T  +L +      +L  A  L  + + +  NP    FS  + A       
Sbjct: 226 ITKRISPDVVTFNSLILGFCVVGQLKEAFGLFHEMVLKNINPDVYTFSILVDALCKDGNI 285

Query: 412 ERAIKIFA-KMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
            RA  + A  M+Q + PD+ TY  L   +  VN          +V+ AK + +    M+R
Sbjct: 286 TRAKNMLAVMMKQGVIPDVVTYSSLMDGYCLVN----------EVNKAKHVFS---TMSR 332

Query: 471 NNIQ-HSHISMKNLLKALGAEGMIRELIQYF----CDSKTPLGTPTYNTVLHSLVEAQES 525
             +  H+H S   ++  LG   M+ E +  F    C    P  T TYN+++  L +    
Sbjct: 333 LGVAPHAH-SYNIMINGLGKIKMVDEALSLFKEMCCKGIAP-DTVTYNSLIDGLCKLGRI 390

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
             A ++  +M   GIP +  TYN +ID          A ALV  +   G  P   TY  L
Sbjct: 391 SYAWQLVDEMHNNGIPADILTYNSLIDVLCKNHHIDKAIALVKKIKDQGIQPSMYTYNIL 450

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           I  L   G    A ++   + ++G   +   YN ++   C++G  +  E ++ +M  N +
Sbjct: 451 IDGLCKGGRLKNAQDVFQDLLIKGYSVNAWTYNIMINGLCKEGLFNEAEVLLSKMENNGI 510

Query: 646 QPDPST 651
            PD  T
Sbjct: 511 IPDAVT 516



 Score = 60.1 bits (144), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 67/125 (53%), Gaps = 5/125 (4%)

Query: 509 TPT---YNTVLHSLVEAQESH--RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSA 563
           TP+   +N +L S+V+A  +H   A+ +  Q++  GI P   T+NI+++C   +     A
Sbjct: 54  TPSIVEFNKILGSIVKANNNHYTTAISLSHQLELKGITPTIVTFNILVNCYCHLGEMTFA 113

Query: 564 SALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKK 623
            ++ + +++ G++P T+T+  LI  +   G   EAL+  D V   G   D + Y T++  
Sbjct: 114 FSIFAKILKLGYHPTTITFNTLINGICLNGKLKEALHFHDHVIALGFHLDQVSYRTLING 173

Query: 624 ACEKG 628
            C+ G
Sbjct: 174 LCKIG 178


>gi|14532710|gb|AAK64156.1| unknown protein [Arabidopsis thaliana]
          Length = 974

 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 111/601 (18%), Positives = 239/601 (39%), Gaps = 83/601 (13%)

Query: 108 ETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERY--------------- 152
           + ++ M E+ +  + K Y +++ A C+ G ++   ++++   + +               
Sbjct: 207 DVYKGMVERNVVFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEKEFRTATLNVDGALKLKE 266

Query: 153 -----GIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQK 207
                G+ P+   Y+  +    K+  +  A   L  MDS  V  +  TY+ L+   +  +
Sbjct: 267 SMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGR 326

Query: 208 NLSAVHEIWEDYIKH-YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMM--GKLYI 264
           N  A   +  + + H  ++  +     +   ++   ++ A      M+A  ++   + Y 
Sbjct: 327 NADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYA 386

Query: 265 NRTSEGRLRSSRLDIPIPLNALPVMK-----VLRWSFSDVIHACGRTQNSGLAEQLMLQM 319
           +   EG  R   +     L  L  MK     +  +++  V+     + +   A  ++ +M
Sbjct: 387 SLI-EGYCREKNVRQGYEL--LVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEM 443

Query: 320 QSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALEL 379
            + G +P+   Y   I+  + +    + M VLK M++  + P      +L +  SKA  +
Sbjct: 444 IASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRM 503

Query: 380 DLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLF 439
           D A + L ++                               +   L+P+  TY       
Sbjct: 504 DEARSFLVEM-------------------------------VENGLKPNAFTY------- 525

Query: 440 GNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQY 499
           G   + Y E + F+  D   +      +M    +  + +    L+     +G + E    
Sbjct: 526 GAFISGYIEASEFASADKYVK------EMRECGVLPNKVLCTGLINEYCKKGKVIEACSA 579

Query: 500 F---CDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSI 556
           +    D        TY  +++ L +  +   A EIF++M+  GI P+  +Y ++I+  S 
Sbjct: 580 YRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSK 639

Query: 557 IRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLL 616
           +   + AS++   MV +G  P  + Y  L+      G+ ++A  LLD +S++G+  + + 
Sbjct: 640 LGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVT 699

Query: 617 YNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVN-CGFHNSAMEALQVL 675
           Y TI+   C+ G +     + ++M    + PD     FV++  V+ C   N    A+ + 
Sbjct: 700 YCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPD----SFVYTTLVDGCCRLNDVERAITIF 755

Query: 676 S 676
            
Sbjct: 756 G 756



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 132/634 (20%), Positives = 242/634 (38%), Gaps = 90/634 (14%)

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
           M+   + L+N  Y L++  L KG   + A  L++ +   +GI     +Y+  +   +K  
Sbjct: 303 MDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEM-VSHGINIKPYMYDCCICVMSKEG 361

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK-HYSLSIFSLR 231
            M  A    D M +  +      Y  L++    +KN+   +E+  +  K +  +S ++  
Sbjct: 362 VMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYG 421

Query: 232 KFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRT-SEGRLRSSRLDIPIPLNALPVMK 290
             V       DL  AY  ++ M+A      + I  T  +  L++SR       +A+ V+K
Sbjct: 422 TVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFG-----DAMRVLK 476

Query: 291 VLR--------WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDR 342
            ++        + ++ +I    + +    A   +++M   GL+P++ TY  FI   +   
Sbjct: 477 EMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEAS 536

Query: 343 GLRNGMEVLKIMQQNNLKPQDSTIATLSVE-CSKALELDLAEA---LLDQISRCTNPKPF 398
              +  + +K M++  + P       L  E C K   ++   A   ++DQ     + K +
Sbjct: 537 EFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQ-GILGDAKTY 595

Query: 399 SAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELL---FSLFGNVNAP-------YE 447
           +  +      DK + A +IF +MR K + PD+ +Y +L   FS  GN+           E
Sbjct: 596 TVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVE 655

Query: 448 EG--------NM----FSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRE 495
           EG        NM    F +    ++   +  +M+   +  + ++   ++      G + E
Sbjct: 656 EGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAE 715

Query: 496 LIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIF-KQMKTCGIP---------- 541
             + F + K     P    Y T++       +  RA+ IF    K C             
Sbjct: 716 AFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALINW 775

Query: 542 ---------------------------PNAATYNIMIDCCSIIRCFKSASALVSMMVRDG 574
                                      PN  TYNIMID        ++A  L   M    
Sbjct: 776 VFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNAN 835

Query: 575 FYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIE 634
             P  +TYT+L+      G   E   + D     GI  D ++Y+ I+    ++G      
Sbjct: 836 LMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKAL 895

Query: 635 FIIEQMHQNKVQPDP-----STCHFVFSGYVNCG 663
            +++QM       D      STC  + SG+   G
Sbjct: 896 VLVDQMFAKNAVDDGCKLSISTCRALLSGFAKVG 929



 Score = 66.6 bits (161), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 82/374 (21%), Positives = 147/374 (39%), Gaps = 51/374 (13%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A+ L   M + GL P +  Y   I     ++ +R G E+L  M++ N+     T  T+  
Sbjct: 366 AKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVK 425

Query: 372 ECSKALELDLAEALLDQI--SRC-TNPKPFSAFLAACDTMDKPERAIKIFAKMR-QKLRP 427
               + +LD A  ++ ++  S C  N   ++  +       +   A+++  +M+ Q + P
Sbjct: 426 GMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAP 485

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL 487
           DI  Y                 ++   +  AKR     MD AR+ +      ++N LK  
Sbjct: 486 DIFCYN----------------SLIIGLSKAKR-----MDEARSFLVEM---VENGLKP- 520

Query: 488 GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATY 547
                                  TY   +   +EA E   A +  K+M+ CG+ PN    
Sbjct: 521 --------------------NAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLC 560

Query: 548 NIMI-DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVS 606
             +I + C   +  ++ SA  SM V  G      TYT L+  L      D+A  +   + 
Sbjct: 561 TGLINEYCKKGKVIEACSAYRSM-VDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMR 619

Query: 607 LEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHN 666
            +GI  DV  Y  ++    + G +     I ++M +  + P+    + +  G+   G   
Sbjct: 620 GKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIE 679

Query: 667 SAMEALQVLSMRML 680
            A E L  +S++ L
Sbjct: 680 KAKELLDEMSVKGL 693



 Score = 60.1 bits (144), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/177 (23%), Positives = 75/177 (42%), Gaps = 6/177 (3%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
            Y +++      +   +  E+  +MK   I  +  TY  ++           A  +V  M
Sbjct: 384 AYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEM 443

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           +  G  P  + YT LIK  L    F +A+ +L  +  +GI  D+  YN+++    +  R+
Sbjct: 444 IASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRM 503

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSA------MEALQVLSMRMLC 681
           D     + +M +N ++P+  T     SGY+      SA      M    VL  ++LC
Sbjct: 504 DEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLC 560



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 74/362 (20%), Positives = 137/362 (37%), Gaps = 42/362 (11%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           AE++  +M+  G+ P   +Y   I        ++    +   M +  L P       L  
Sbjct: 611 AEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLG 670

Query: 372 ECSKALELDLAEALLDQIS-RCTNPKPFS---AFLAACDTMDKPERAIKIFAKMRQK-LR 426
              ++ E++ A+ LLD++S +  +P   +        C + D  E A ++F +M+ K L 
Sbjct: 671 GFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAE-AFRLFDEMKLKGLV 729

Query: 427 PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHIS------- 479
           PD   Y  L                   VD   R+N +E  +          +       
Sbjct: 730 PDSFVYTTL-------------------VDGCCRLNDVERAITIFGTNKKGCASSTAPFN 770

Query: 480 -MKNLLKALGAEGMIRELIQYFCD-SKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQ 534
            + N +   G   +  E++    D S    G P   TYN ++  L +      A E+F Q
Sbjct: 771 ALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQ 830

Query: 535 MKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGD 594
           M+   + P   TY  +++    +        +    +  G  P  + Y+ +I   L  G 
Sbjct: 831 MQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGM 890

Query: 595 FDEALNLLDLVSL-----EGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649
             +AL L+D +       +G    +     +L    + G ++V E ++E M + +  PD 
Sbjct: 891 TTKALVLVDQMFAKNAVDDGCKLSISTCRALLSGFAKVGEMEVAEKVMENMVRLQYIPDS 950

Query: 650 ST 651
           +T
Sbjct: 951 AT 952


>gi|47550658|dbj|BAD20284.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 791

 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 91/398 (22%), Positives = 164/398 (41%), Gaps = 16/398 (4%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ ++H    ++    A   + +M+S G++P   TY+  +  +  +       ++   M
Sbjct: 268 TYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSM 327

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR-CTNPK--PFSAFLAACDTMDKP 411
            +  L+P  +T  TL    +    L    ALLD + R   +P    F+  + A    +K 
Sbjct: 328 TKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKV 387

Query: 412 ERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQ-VDSAKRINAIEMDMA 469
           + A+ +F+KMRQ  L P++ TY  +  +     +  +    F Q +D     N I     
Sbjct: 388 DEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNII----V 443

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAM 529
             ++ HS        KA        ELI    D    L T  +N+++HS  +      + 
Sbjct: 444 YTSLIHSLCIFDKWDKA-------EELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESE 496

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
           ++F  M   G+ PN  TY+ +ID   +      A+ L+S M   G  P  +TY  LI   
Sbjct: 497 KLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGY 556

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649
                 D+AL L   +   G+  +++ YN IL+      R    + +   + ++  Q + 
Sbjct: 557 CRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVGITKSGTQLEL 616

Query: 650 STCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTL 687
           ST + +  G       + A+   Q L +  L  E  T 
Sbjct: 617 STYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTF 654



 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 87/400 (21%), Positives = 158/400 (39%), Gaps = 52/400 (13%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           S++ VI+   +  +S  A     +M    + P   TY   I A+   + +   MEVL  M
Sbjct: 198 SYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTM 257

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERA 414
            +N + P                                N   +++ L    + ++P+ A
Sbjct: 258 VKNGVMP--------------------------------NCMTYNSILHGYCSSEQPKEA 285

Query: 415 IKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNI 473
           I    KMR   + PD+ TY  L           E   +F  +   KR   +E D+A    
Sbjct: 286 IGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSM--TKR--GLEPDIA---- 337

Query: 474 QHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAME 530
                +   LL+    +G + E   L+     +        +N ++ +  + ++   AM 
Sbjct: 338 -----TYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAML 392

Query: 531 IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590
           +F +M+  G+ PN  TY  +I           A      M+ +G  P  + YT+LI  L 
Sbjct: 393 VFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLC 452

Query: 591 DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650
            +  +D+A  L+  +   GI  + + +N+I+   C++GR+   E + + M +  V+P+  
Sbjct: 453 IFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVI 512

Query: 651 TCHFVFSGYVNCGFHNSAMEALQVL---SMRMLCEEVSTL 687
           T   +  GY   G  + A + L  +    M+  C   +TL
Sbjct: 513 TYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTL 552



 Score = 54.3 bits (129), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 122/605 (20%), Positives = 225/605 (37%), Gaps = 64/605 (10%)

Query: 59  IVDALCRGERSRASHLLLNLGHAHHSLGAD----DFFHILNYCARSPDPLFVMETWRMME 114
           ++  LC   RS+ +  LL++       G+      +  ++N   +  D      T+  M 
Sbjct: 164 LLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVINGFFKEGDSDKAYSTYHEML 223

Query: 115 EKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSM 174
           ++ I  +   Y  ++ ALCKG  +++A  ++  +  + G+ P    YNS L         
Sbjct: 224 DRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTM-VKNGVMPNCMTYNSILHGYCSSEQP 282

Query: 175 VHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFV 234
             A   L  M S  V  + VTY  L+         +   +I++   K        L   +
Sbjct: 283 KEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKR------GLEPDI 336

Query: 235 WSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRW 294
            ++  L    +    L  M AL                    LD+ +     P   V   
Sbjct: 337 ATYCTLLQGYATKGALVEMHAL--------------------LDLMVRNGIHPDHHV--- 373

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
            F+ +I A  + +    A  +  +M+  GL P+  TY   I  +     + + M   + M
Sbjct: 374 -FNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQM 432

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEAL-LDQISR--CTNPKPFSAFLAACDTMDKP 411
               L P      +L        + D AE L L+ + R  C N   F++ + +     + 
Sbjct: 433 IDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRV 492

Query: 412 ERAIKIFAKM-RQKLRPDIRTYELL---FSLFGNVN-------APYEEG----------- 449
             + K+F  M R  ++P++ TY  L   + L G ++       + +  G           
Sbjct: 493 IESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTL 552

Query: 450 -NMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL---GAEGMIRELIQYFCDSKT 505
            N + +V       A+  +M  + +  + I+   +L+ L         +EL      S T
Sbjct: 553 INGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVGITKSGT 612

Query: 506 PLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASA 565
            L   TYN +LH L +   +  A+ +F+ +    +     T+NIMI     +     A  
Sbjct: 613 QLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKD 672

Query: 566 LVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKAC 625
           L      +G  P   TY  + + ++  G  +E   L   +   G   D  + N I+++  
Sbjct: 673 LFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFFSMEDNGCTVDSGMLNFIVRELL 732

Query: 626 EKGRI 630
           ++G I
Sbjct: 733 QRGEI 737



 Score = 39.7 bits (91), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 71/167 (42%), Gaps = 9/167 (5%)

Query: 528 AMEIFKQMKTCG---IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
           A+  + +M   G   + P   TY I+I CC          A +  +V+ GF  + +T+T 
Sbjct: 68  AVSRYNRMARAGAGKVTPTVHTYGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTP 127

Query: 585 LIKILLDYGDFDEALNLL--DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642
           L+K L       +A++++   +  L  +P DV     +LK  C++ R      ++  M  
Sbjct: 128 LLKGLCADKRTSDAMDIVLRRMTELSCMP-DVFSCTILLKGLCDENRSQEALELLHMMAD 186

Query: 643 NK---VQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           ++     PD  +   V +G+   G  + A      +  R +  +V T
Sbjct: 187 DRGGGSAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVT 233


>gi|357463605|ref|XP_003602084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491132|gb|AES72335.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 579

 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 96/194 (49%)

Query: 477 HISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMK 536
            +S   L+  L   G  R  +Q    +        Y+T++ SL + +    A  ++ +M 
Sbjct: 115 QVSYAILMNGLCKMGETRAAMQMLRKTWVNADVVMYSTIIDSLCKGKFVTDAYRLYSEMI 174

Query: 537 TCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFD 596
             GI PN  T++I++D     R  K A  L++MM++ G  P  +TY A++         +
Sbjct: 175 AKGIFPNVYTFSILVDALCKDRKGKQAMNLLAMMMKKGVKPNVVTYGAIMDGYCLVNQVN 234

Query: 597 EALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVF 656
           +ALN+ +++  EG+  +V  YN I+   C+K R+D    + ++MH  K+ PD  T + + 
Sbjct: 235 KALNIFNVMVQEGVEPNVWCYNIIINGLCKKKRVDEAMNLFKEMHWKKINPDVVTYNILI 294

Query: 657 SGYVNCGFHNSAME 670
            G    G  ++++E
Sbjct: 295 DGLCKLGKISTSLE 308



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 77/335 (22%), Positives = 140/335 (41%), Gaps = 43/335 (12%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           +S +I +  + +    A +L  +M + G+ P+ +T+   + A+  DR  +  M +L +M 
Sbjct: 150 YSTIIDSLCKGKFVTDAYRLYSEMIAKGIFPNVYTFSILVDALCKDRKGKQAMNLLAMMM 209

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAI 415
           +  +KP                                N   + A +     +++  +A+
Sbjct: 210 KKGVKP--------------------------------NVVTYGAIMDGYCLVNQVNKAL 237

Query: 416 KIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQ 474
            IF  M Q+ + P++  Y ++ +         E  N+F ++   K+IN    D+   NI 
Sbjct: 238 NIFNVMVQEGVEPNVWCYNIIINGLCKKKRVDEAMNLFKEM-HWKKINP---DVVTYNI- 292

Query: 475 HSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQ 534
                + + L  LG      EL+         +   TYN++LH+L +     +A+ + K+
Sbjct: 293 -----LIDGLCKLGKISTSLELVDEMRSIGKTVDIITYNSLLHALCKNHHLDQAITLVKE 347

Query: 535 MKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGD 594
           +K  GI PN  TY  +ID        + A  +   ++ +G++    TY  +I  L   G 
Sbjct: 348 IKDQGIQPNVCTYTTLIDGLCKDGRLEDAYVIFQEILTEGYHITVWTYNVMINGLCKKGL 407

Query: 595 FDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
           FDEAL LL  +       D + Y TI+    EKG 
Sbjct: 408 FDEALALLSRMEDNACIPDAVSYETIIYALSEKGE 442



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 94/196 (47%), Gaps = 7/196 (3%)

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           YN +++ L + +    AM +FK+M    I P+  TYNI+ID    +    ++  LV  M 
Sbjct: 255 YNIIINGLCKKKRVDEAMNLFKEMHWKKINPDVVTYNILIDGLCKLGKISTSLELVDEMR 314

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
             G     +TY +L+  L      D+A+ L+  +  +GI  +V  Y T++   C+ GR++
Sbjct: 315 SIGKTVDIITYNSLLHALCKNHHLDQAITLVKEIKDQGIQPNVCTYTTLIDGLCKDGRLE 374

Query: 632 VIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKR 691
               I +++          T + + +G    G  +   EAL +LS RM  E+ + + +  
Sbjct: 375 DAYVIFQEILTEGYHITVWTYNVMINGLCKKGLFD---EALALLS-RM--EDNACIPDAV 428

Query: 692 SDFEDLILAEDSEAES 707
           S +E +I A   + E+
Sbjct: 429 S-YETIIYALSEKGET 443



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 66/130 (50%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           T++ ++ +L + ++  +AM +   M   G+ PN  TY  ++D   ++     A  + ++M
Sbjct: 184 TFSILVDALCKDRKGKQAMNLLAMMMKKGVKPNVVTYGAIMDGYCLVNQVNKALNIFNVM 243

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           V++G  P    Y  +I  L      DEA+NL   +  + I  DV+ YN ++   C+ G+I
Sbjct: 244 VQEGVEPNVWCYNIIINGLCKKKRVDEAMNLFKEMHWKKINPDVVTYNILIDGLCKLGKI 303

Query: 631 DVIEFIIEQM 640
                ++++M
Sbjct: 304 STSLELVDEM 313



 Score = 60.1 bits (144), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 58/256 (22%), Positives = 104/256 (40%), Gaps = 11/256 (4%)

Query: 394 NPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMF 452
           N   FS  + A     K ++A+ + A M +K ++P++ TY  +   +  VN   +  N+F
Sbjct: 181 NVYTFSILVDALCKDRKGKQAMNLLAMMMKKGVKPNVVTYGAIMDGYCLVNQVNKALNIF 240

Query: 453 SQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTY 512
                    N +  +    N+   +I +  L K    +  +    +       P    TY
Sbjct: 241 ---------NVMVQEGVEPNVWCYNIIINGLCKKKRVDEAMNLFKEMHWKKINP-DVVTY 290

Query: 513 NTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVR 572
           N ++  L +  +   ++E+  +M++ G   +  TYN ++           A  LV  +  
Sbjct: 291 NILIDGLCKLGKISTSLELVDEMRSIGKTVDIITYNSLLHALCKNHHLDQAITLVKEIKD 350

Query: 573 DGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDV 632
            G  P   TYT LI  L   G  ++A  +   +  EG    V  YN ++   C+KG  D 
Sbjct: 351 QGIQPNVCTYTTLIDGLCKDGRLEDAYVIFQEILTEGYHITVWTYNVMINGLCKKGLFDE 410

Query: 633 IEFIIEQMHQNKVQPD 648
              ++ +M  N   PD
Sbjct: 411 ALALLSRMEDNACIPD 426



 Score = 53.5 bits (127), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 60/118 (50%)

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           +N +L SLV+      A+ +F+Q++  GI P+  T  I+++C           ++++ ++
Sbjct: 13  FNHILASLVKINHYPTAISLFRQLEFNGIKPSIVTLTILMNCYCHTGGITFLFSILTKIL 72

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
           + G+ P ++T+T LIK +   G   EAL   D V   G   D + Y  ++   C+ G 
Sbjct: 73  KMGYEPNSITFTTLIKGMCLNGQAYEALLFHDHVVAHGFKLDQVSYAILMNGLCKMGE 130


>gi|225451899|ref|XP_002279045.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g38730-like [Vitis vinifera]
          Length = 590

 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 85/161 (52%), Gaps = 2/161 (1%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TYNT++    +    + A+ I  +M+  G+ P+  TYN +I      R  +   AL    
Sbjct: 234 TYNTLISLYCKKGMHYEALGIQDRMERGGVSPDIVTYNSLI--YGFCREGRMREALRLFR 291

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
             +G  P  +TYT LI       D +EAL L +++ +EG+   V+ YN+IL+K CE+G+I
Sbjct: 292 EINGATPNHVTYTTLIDGYCRVNDLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKI 351

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEA 671
                ++ +M + KV+PD  TC+ + + Y   G   SAM+ 
Sbjct: 352 KDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKV 392



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 86/396 (21%), Positives = 163/396 (41%), Gaps = 27/396 (6%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A Q+   M+  G +P  H     + ++   R      +V K M +  + P       L  
Sbjct: 146 AIQVFEHMRVHGFKPHLHACTVLLNSLAKARLTNMVWKVYKKMVRVGVVPNIHIFNVLIH 205

Query: 372 ECSKALELDLAEALLDQI-SRCTNPKPFS--AFLAACDTMDKPERAIKIFAKM-RQKLRP 427
            C K+ +++ AE LL+++ SR   P  F+    ++          A+ I  +M R  + P
Sbjct: 206 ACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEALGIQDRMERGGVSP 265

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAK--------------RINAIEMD------ 467
           DI TY  L   F       E   +F +++ A               R+N +E        
Sbjct: 266 DIVTYNSLIYGFCREGRMREALRLFREINGATPNHVTYTTLIDGYCRVNDLEEALRLREV 325

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQE 524
           M    +    ++  ++L+ L  EG I++   L+    + K      T NT++++  +  +
Sbjct: 326 MEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGD 385

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
              AM++ K+M   G+ P+  T+  +I     +    SA   +  M+  GF P   TY+ 
Sbjct: 386 MGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSPSYSTYSW 445

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
           L+    D  + +  + L D +S +G+  D+ +Y  ++++ C+  +I+  E I   M    
Sbjct: 446 LVDSYYDQDNKEAVIRLPDELSRKGLFVDISVYRALIRRLCKIDKIESAERIFTLMQGKG 505

Query: 645 VQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRML 680
           ++ D      +   Y   G   +A + L  +  R L
Sbjct: 506 MKGDSVVYTSLAYAYFKAGKAIAASDMLDEMDKRRL 541



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 82/184 (44%), Gaps = 16/184 (8%)

Query: 514 TVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRD 573
            +L+SL +A+ ++   +++K+M   G+ PN   +N++I  C      + A  L++ M   
Sbjct: 167 VLLNSLAKARLTNMVWKVYKKMVRVGVVPNIHIFNVLIHACCKSGDVEKAEQLLNEMESR 226

Query: 574 GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVI 633
             +P   TY  LI +    G   EAL + D +   G+  D++ YN+++   C +GR+   
Sbjct: 227 FIFPDLFTYNTLISLYCKKGMHYEALGIQDRMERGGVSPDIVTYNSLIYGFCREGRMREA 286

Query: 634 EFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS--------------MRM 679
             +  ++  N   P+  T   +  GY        A+   +V+               +R 
Sbjct: 287 LRLFREI--NGATPNHVTYTTLIDGYCRVNDLEEALRLREVMEVEGLHPGVVTYNSILRK 344

Query: 680 LCEE 683
           LCEE
Sbjct: 345 LCEE 348



 Score = 45.1 bits (105), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 81/383 (21%), Positives = 156/383 (40%), Gaps = 26/383 (6%)

Query: 93  ILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERY 152
           +LN  A++     V + ++ M    +  N   + +++ A CK G +E+A  L+  +  R+
Sbjct: 168 LLNSLAKARLTNMVWKVYKKMVRVGVVPNIHIFNVLIHACCKSGDVEKAEQLLNEMESRF 227

Query: 153 GIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAV 212
            I+P L  YN+ +    K      A    D M+   V  + VTY  L+     +  +   
Sbjct: 228 -IFPDLFTYNTLISLYCKKGMHYEALGIQDRMERGGVSPDIVTYNSLIYGFCREGRMREA 286

Query: 213 HEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMM-GKLYINRT---- 267
             ++ + I   + +  +    +  + R+ DL+ A    + M    +  G +  N      
Sbjct: 287 LRLFRE-INGATPNHVTYTTLIDGYCRVNDLEEALRLREVMEVEGLHPGVVTYNSILRKL 345

Query: 268 -SEGRLR-SSRLDIPIPLNALPVMKVL--RWSFSDVIHACGRTQNSGLAEQLMLQMQSLG 323
             EG+++ ++RL     LN +   KV     + + +I+A  +  + G A ++  +M   G
Sbjct: 346 CEEGKIKDANRL-----LNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAG 400

Query: 324 LQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAE 383
           L+P   T+   I        + +  E L  M      P  ST + L        + D  E
Sbjct: 401 LKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSPSYSTYSWL---VDSYYDQDNKE 457

Query: 384 ALL---DQISR---CTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLF 436
           A++   D++SR     +   + A +     +DK E A +IF  M+ K ++ D   Y  L 
Sbjct: 458 AVIRLPDELSRKGLFVDISVYRALIRRLCKIDKIESAERIFTLMQGKGMKGDSVVYTSLA 517

Query: 437 SLFGNVNAPYEEGNMFSQVDSAK 459
             +          +M  ++D  +
Sbjct: 518 YAYFKAGKAIAASDMLDEMDKRR 540


>gi|356554513|ref|XP_003545590.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g25630-like [Glycine max]
          Length = 632

 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/360 (20%), Positives = 159/360 (44%), Gaps = 21/360 (5%)

Query: 324 LQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAE 383
           ++P S  ++  I A      + +  +V++ M+++ LKP   T  TL      A + D + 
Sbjct: 138 MKPDSIFFNALINAFAESGNMEDAKKVVQKMKESGLKPSACTYNTLIKGYGIAGKPDESM 197

Query: 384 ALLDQISRCTNPKP----FSAFLAACDTMDKPERAIKIFAKMR-QKLRPDIRTYELLFSL 438
            LLD +S   N KP    ++  + A   M+    A  +  KM    ++PD+ T+  +   
Sbjct: 198 KLLDLMSTEGNVKPNLKTYNMLIRALCKMENISEAWNVVYKMTASGMQPDVVTFNTI--- 254

Query: 439 FGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQ 498
                        ++Q     +  A+ ++M RN+++ +  +   ++     EG ++E ++
Sbjct: 255 ----------ATAYAQNGKTAQAEAMILEMQRNSLKPNERTCTIIISGYCREGKVQEALR 304

Query: 499 YFCDSKTPLGTPTY---NTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCS 555
           +    K     P     N++++  V+  +     E+ K M+   I P+  TY+ +++  S
Sbjct: 305 FVYRMKDLGMQPNLIVLNSLVNGFVDMMDRDGVDEVLKLMEEFQIRPDVITYSTIMNAWS 364

Query: 556 IIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVL 615
                +    + + M++ G  P    Y+ L K  +   + ++A  +L +++  G+  +V+
Sbjct: 365 QAGFLEKCKEIYNNMLKSGVKPDAHAYSILAKGYVRAQEMEKAEEMLTVMTKSGVHPNVV 424

Query: 616 LYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
           ++ T++   C  GR+D    + ++M +  V P+  T   +  GY        A   LQ++
Sbjct: 425 IFTTVISGWCSVGRMDNAMRVFDKMGEFGVSPNLKTFETLIWGYAEAKQPWKAEGMLQIM 484



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 90/234 (38%), Gaps = 38/234 (16%)

Query: 468 MARNNIQ--HSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQES 525
           M +N+ Q   S   + N+L   G       + Q   +        TY T+L++L   +  
Sbjct: 64  MGKNDCQIVRSRTKVMNILIKSGKPQEAIVIFQNLIEGGHQPSLATYTTLLNALTTQKYF 123

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
                I   ++   + P++  +N +I+  +     + A  +V  M   G  P   TY  L
Sbjct: 124 KPIHSIVSLVEEKQMKPDSIFFNALINAFAESGNMEDAKKVVQKMKESGLKPSACTYNTL 183

Query: 586 IKILLDYGDFDEALNLLDLVSLE------------------------------------G 609
           IK     G  DE++ LLDL+S E                                    G
Sbjct: 184 IKGYGIAGKPDESMKLLDLMSTEGNVKPNLKTYNMLIRALCKMENISEAWNVVYKMTASG 243

Query: 610 IPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
           +  DV+ +NTI     + G+    E +I +M +N ++P+  TC  + SGY   G
Sbjct: 244 MQPDVVTFNTIATAYAQNGKTAQAEAMILEMQRNSLKPNERTCTIIISGYCREG 297



 Score = 44.3 bits (103), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 66/346 (19%), Positives = 130/346 (37%), Gaps = 72/346 (20%)

Query: 112 MMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKL 171
           M  E  +  N K Y ++++ALCK   + EA N++Y +    G+ P +  +N+   A A+ 
Sbjct: 203 MSTEGNVKPNLKTYNMLIRALCKMENISEAWNVVYKMTAS-GMQPDVVTFNTIATAYAQN 261

Query: 172 HSMVHANLCLDLMDSRMVGKNEVTYTELL----KLAVWQKNLSAVHEIWEDYIKHYSLSI 227
                A   +  M    +  NE T T ++    +    Q+ L  V+ + +D     +L +
Sbjct: 262 GKTAQAEAMILEMQRNSLKPNERTCTIIISGYCREGKVQEALRFVYRM-KDLGMQPNLIV 320

Query: 228 FSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALP 287
             L   V  F  + D     E L+ M               E ++R   +     +NA  
Sbjct: 321 --LNSLVNGFVDMMDRDGVDEVLKLM--------------EEFQIRPDVITYSTIMNA-- 362

Query: 288 VMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNG 347
                 WS +  +  C    N+         M   G++P +H Y    +  V  + +   
Sbjct: 363 ------WSQAGFLEKCKEIYNN---------MLKSGVKPDAHAYSILAKGYVRAQEMEKA 407

Query: 348 MEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDT 407
            E+L +M ++ + P                                N   F+  ++   +
Sbjct: 408 EEMLTVMTKSGVHP--------------------------------NVVIFTTVISGWCS 435

Query: 408 MDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMF 452
           + + + A+++F KM +  + P+++T+E L   +     P++   M 
Sbjct: 436 VGRMDNAMRVFDKMGEFGVSPNLKTFETLIWGYAEAKQPWKAEGML 481



 Score = 44.3 bits (103), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 80/384 (20%), Positives = 153/384 (39%), Gaps = 52/384 (13%)

Query: 194 VTYTELLKLAVWQKNLSAVHEIW----EDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYET 249
            TYT LL     QK    +H I     E  +K  S+   +L   + +F    +++ A + 
Sbjct: 108 ATYTTLLNALTTQKYFKPIHSIVSLVEEKQMKPDSIFFNAL---INAFAESGNMEDAKKV 164

Query: 250 LQHMVALAMM-GKLYINRTSEGRLRSSRLDIPIPL--------NALPVMKVLRWSFSDVI 300
           +Q M    +       N   +G   + + D  + L        N  P +K    +++ +I
Sbjct: 165 VQKMKESGLKPSACTYNTLIKGYGIAGKPDESMKLLDLMSTEGNVKPNLK----TYNMLI 220

Query: 301 HACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLK 360
            A  + +N   A  ++ +M + G+QP   T++    A   +        ++  MQ+N+LK
Sbjct: 221 RALCKMENISEAWNVVYKMTASGMQPDVVTFNTIATAYAQNGKTAQAEAMILEMQRNSLK 280

Query: 361 PQDSTIA-TLSVECSKALELDLAEAL-----LDQISRCTNPKPFSAFLAA-CDTMDKP-- 411
           P + T    +S  C    E  + EAL     +  +    N    ++ +    D MD+   
Sbjct: 281 PNERTCTIIISGYCR---EGKVQEALRFVYRMKDLGMQPNLIVLNSLVNGFVDMMDRDGV 337

Query: 412 ERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471
           +  +K+  + +  +RPD+ TY  +              N +SQ    ++   I  +M ++
Sbjct: 338 DEVLKLMEEFQ--IRPDVITYSTIM-------------NAWSQAGFLEKCKEIYNNMLKS 382

Query: 472 NIQ---HSH-ISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHR 527
            ++   H++ I  K  ++A   E    E++     S        + TV+           
Sbjct: 383 GVKPDAHAYSILAKGYVRAQEME-KAEEMLTVMTKSGVHPNVVIFTTVISGWCSVGRMDN 441

Query: 528 AMEIFKQMKTCGIPPNAATYNIMI 551
           AM +F +M   G+ PN  T+  +I
Sbjct: 442 AMRVFDKMGEFGVSPNLKTFETLI 465


>gi|218199303|gb|EEC81730.1| hypothetical protein OsI_25362 [Oryza sativa Indica Group]
          Length = 583

 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 86/406 (21%), Positives = 171/406 (42%), Gaps = 32/406 (7%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           ++ +IHA  R      A  +M  M    + P+  TY+  I A  +    +  +E+ K M 
Sbjct: 49  YNSLIHAHSRAGQWRWAINIMEDMLRAAIPPTRTTYNNVINACGAAGNWKKALELCKKMT 108

Query: 356 QNNLKP----QDSTIATL--SVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMD 409
           +N + P     +  ++ L    + SKA+       ++   +  ++    +  +     + 
Sbjct: 109 ENGVGPDLVTHNIVLSALKNGAQYSKAISY---FEIMKGANVTSDTFTLNIIIHCLVKIG 165

Query: 410 KPERAIKIFAKMRQ---KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM 466
           +   AI++F  MR+   K  PD+ TY  +   +           ++ QV++ K I  +  
Sbjct: 166 QCGEAIELFNSMRERRTKCPPDVVTYTSIMHSYC----------IYGQVENCKAIFDL-- 213

Query: 467 DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQ 523
            M    ++ + ++  +LL A  + GM RE +  F   K     P   +Y ++L++   + 
Sbjct: 214 -MVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLIKKNGLRPDIVSYTSLLNAYGRSA 272

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
           +  +A E+F +MK     PN  +YN +ID        K A  L+  M +DG  P  ++ +
Sbjct: 273 QPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGMLKEAVGLLHEMEKDGIQPDVVSIS 332

Query: 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
            L+              +L+     GI  + + YN+ +K     G  +    +   M ++
Sbjct: 333 TLLAACGRCRQITRIETILEAARSRGIDLNTVAYNSGIKSYLSFGDYEKALELYTSMRES 392

Query: 644 KVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEE 689
            V+PD  T + + SG    G +  ++   +     M+  +VS+ +E
Sbjct: 393 NVKPDAVTYNILISGSSKLGKYTESLRFFE----DMVDSKVSSTKE 434



 Score = 62.8 bits (151), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/224 (19%), Positives = 88/224 (39%), Gaps = 41/224 (18%)

Query: 489 AEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYN 548
           A G+  E+ ++ C     +    YN+++H+   A +   A+ I + M    IPP   TYN
Sbjct: 30  ARGLFFEMQEWRCKPDADI----YNSLIHAHSRAGQWRWAINIMEDMLRAAIPPTRTTYN 85

Query: 549 IMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLE 608
            +I+ C     +K A  L   M  +G  P  +T+  ++  L +   + +A++  +++   
Sbjct: 86  NVINACGAAGNWKKALELCKKMTENGVGPDLVTHNIVLSALKNGAQYSKAISYFEIMKGA 145

Query: 609 GI-------------------------------------PHDVLLYNTILKKACEKGRID 631
            +                                     P DV+ Y +I+   C  G+++
Sbjct: 146 NVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDVVTYTSIMHSYCIYGQVE 205

Query: 632 VIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
             + I + M    V+P+    + +   Y + G H  A+    ++
Sbjct: 206 NCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLI 249



 Score = 42.4 bits (98), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 1/112 (0%)

Query: 90  FFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLG 149
           +  +LN   RS  P    E +  M++     N   Y  ++ A    G L+EA  L++ + 
Sbjct: 261 YTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGMLKEAVGLLHEM- 319

Query: 150 ERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLK 201
           E+ GI P +   ++ L AC +   +      L+   SR +  N V Y   +K
Sbjct: 320 EKDGIQPDVVSISTLLAACGRCRQITRIETILEAARSRGIDLNTVAYNSGIK 371



 Score = 40.4 bits (93), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 35/167 (20%), Positives = 65/167 (38%)

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           Y  ++       +  +A  +F +M+     P+A  YN +I   S    ++ A  ++  M+
Sbjct: 14  YGMMIRLYARHNQVDQARGLFFEMQEWRCKPDADIYNSLIHAHSRAGQWRWAINIMEDML 73

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
           R    P   TY  +I      G++ +AL L   ++  G+  D++ +N +L       +  
Sbjct: 74  RAAIPPTRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLVTHNIVLSALKNGAQYS 133

Query: 632 VIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678
                 E M    V  D  T + +    V  G    A+E    +  R
Sbjct: 134 KAISYFEIMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRER 180


>gi|299469655|emb|CBN76509.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 787

 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 100/451 (22%), Positives = 181/451 (40%), Gaps = 45/451 (9%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVS-DRGLRNGMEVLKIM 354
           ++  I ACG    S +A  L+ +M +LG++P++ T    +RA    DRG    + VL+ M
Sbjct: 322 YNTAIAACGTGGQSEVAVDLLEEMNALGVRPNTQTCLAAVRAAGDRDRG-EQAVSVLRSM 380

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDK 410
            +  +  +    A     C +      A  LL ++ +    +P    + A +AAC    +
Sbjct: 381 SEAGVAAEAKCYAVTIKACGRGRRWARALELLREMEK-NGVEPIVMGYDACIAACGDGKQ 439

Query: 411 PERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNV-----------NAPYEEGNMFSQVDSA 458
            E+A+ +  +M    + P + +Y    +  G               P E G     V   
Sbjct: 440 WEQAVALLREMPTVGVTPTVVSYSHAIAACGQSYQWKPALELLREMPQEAGINPDAVCYN 499

Query: 459 KRINAI------EM------DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTP 506
             + A+      EM      +M    +     S    +KA G  G  +  +    + +  
Sbjct: 500 NCMTALGRGLQWEMALTLLREMPSVGLPIKAQSYTVAIKACGDAGEGKPAVALLREMQAE 559

Query: 507 LGTP----TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKS 562
           L  P    +Y   + +  +  +  +A+E+ ++M + G+ PN  TY   I  C     ++ 
Sbjct: 560 LSVPPNVISYTAAIAACGKGDQWKQALELLREMASMGVSPNDRTYTAAITACGNSGKWEE 619

Query: 563 ASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILK 622
           A +L+  M   G  P   +YTA IK   + G ++ A+ L   +   GI  DV  YN  ++
Sbjct: 620 ALSLLREMPTMGADPNIASYTATIKACGNGGQWERAVELFRELPSAGITADVQAYNACVQ 679

Query: 623 KACEKGRID-VIEFIIEQMHQNKVQPDPST--CHFVFSGYVNCGFHNSAMEALQVLSMRM 679
                G +D  +E + E      ++P+  T     +     + G    A+E L+ ++ R 
Sbjct: 680 ACGNSGAVDQAVELLREMAPAAGLEPNVFTYNAALMACSCPDGGRWGKALELLEEMAWRG 739

Query: 680 LCEEVSTLE-------EKRSDFEDLILAEDS 703
           +     T E       E+  D  D +LA+ S
Sbjct: 740 IAPNAVTHESALAACGERGRDEADRVLADMS 770



 Score = 69.7 bits (169), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 82/403 (20%), Positives = 158/403 (39%), Gaps = 44/403 (10%)

Query: 111 RMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAK 170
           R M E  +    KCY + ++A  +G     A  L+  + E+ G+ PI+  Y++ + AC  
Sbjct: 378 RSMSEAGVAAEAKCYAVTIKACGRGRRWARALELLREM-EKNGVEPIVMGYDACIAACGD 436

Query: 171 LHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAV----WQKNLSAVHE------IWEDYI 220
                 A   L  M +  V    V+Y+  +        W+  L  + E      I  D +
Sbjct: 437 GKQWEQAVALLREMPTVGVTPTVVSYSHAIAACGQSYQWKPALELLREMPQEAGINPDAV 496

Query: 221 KHYSLSIFSLRKFVW--SFTRLRDLKSA---YETLQHMVALAMMGKLYINRTSEGRLRSS 275
            + +      R   W  + T LR++ S     +   + VA+   G     + +   LR  
Sbjct: 497 CYNNCMTALGRGLQWEMALTLLREMPSVGLPIKAQSYTVAIKACGDAGEGKPAVALLREM 556

Query: 276 RLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFI 335
           + ++ +P N +        S++  I ACG+      A +L+ +M S+G+ P+  TY   I
Sbjct: 557 QAELSVPPNVI--------SYTAAIAACGKGDQWKQALELLREMASMGVSPNDRTYTAAI 608

Query: 336 RAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRC--- 392
            A  +       + +L+ M      P  ++       C    + + A  L  ++      
Sbjct: 609 TACGNSGKWEEALSLLREMPTMGADPNIASYTATIKACGNGGQWERAVELFRELPSAGIT 668

Query: 393 TNPKPFSAFLAACDTMDKPERAIKIFAKM--RQKLRPDIRTYELLFSLFGNVNAPYEEGN 450
            + + ++A + AC      ++A+++  +M     L P++ TY                  
Sbjct: 669 ADVQAYNACVQACGNSGAVDQAVELLREMAPAAGLEPNVFTYNAALM------------- 715

Query: 451 MFSQVDSAKRINAIEM--DMARNNIQHSHISMKNLLKALGAEG 491
             S  D  +   A+E+  +MA   I  + ++ ++ L A G  G
Sbjct: 716 ACSCPDGGRWGKALELLEEMAWRGIAPNAVTHESALAACGERG 758



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 66/140 (47%)

Query: 513 NTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVR 572
           N VL++          +E+ +QM+  G+ P+A TY   I  C   R ++ + AL+  M  
Sbjct: 218 NAVLNTFAADGRWQVVLEVMRQMREAGLTPDALTYTNAIKACGKGREWRRSVALLKEMSA 277

Query: 573 DGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDV 632
            G    ++ Y   +      G   EA+ LL  +   GI  +V+ YNT +      G+ +V
Sbjct: 278 HGVELNSIHYVCAMTACKISGMGAEAVGLLREMQAAGIEPNVICYNTAIAACGTGGQSEV 337

Query: 633 IEFIIEQMHQNKVQPDPSTC 652
              ++E+M+   V+P+  TC
Sbjct: 338 AVDLLEEMNALGVRPNTQTC 357



 Score = 63.2 bits (152), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 81/411 (19%), Positives = 162/411 (39%), Gaps = 35/411 (8%)

Query: 299 VIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNN 358
            + AC  +     A  L+ +MQ+ G++P+   Y+  I A  +       +++L+ M    
Sbjct: 290 AMTACKISGMGAEAVGLLREMQAAGIEPNVICYNTAIAACGTGGQSEVAVDLLEEMNALG 349

Query: 359 LKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKPERAI 415
           ++P   T              + A ++L  +S        K ++  + AC    +  RA+
Sbjct: 350 VRPNTQTCLAAVRAAGDRDRGEQAVSVLRSMSEAGVAAEAKCYAVTIKACGRGRRWARAL 409

Query: 416 KIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEE-----------GNMFSQVDSAKRINA 463
           ++  +M +  + P +  Y+   +  G+    +E+           G   + V  +  I A
Sbjct: 410 ELLREMEKNGVEPIVMGYDACIAACGD-GKQWEQAVALLREMPTVGVTPTVVSYSHAIAA 468

Query: 464 I--------EMDMARNNIQHSHIS-----MKNLLKALGAEGMIRE----LIQYFCDSKTP 506
                     +++ R   Q + I+       N + ALG  G+  E    L++       P
Sbjct: 469 CGQSYQWKPALELLREMPQEAGINPDAVCYNNCMTALG-RGLQWEMALTLLREMPSVGLP 527

Query: 507 LGTPTYNTVLHSLVEAQESHRAMEIFKQMKT-CGIPPNAATYNIMIDCCSIIRCFKSASA 565
           +   +Y   + +  +A E   A+ + ++M+    +PPN  +Y   I  C     +K A  
Sbjct: 528 IKAQSYTVAIKACGDAGEGKPAVALLREMQAELSVPPNVISYTAAIAACGKGDQWKQALE 587

Query: 566 LVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKAC 625
           L+  M   G  P   TYTA I    + G ++EAL+LL  +   G   ++  Y   +K   
Sbjct: 588 LLREMASMGVSPNDRTYTAAITACGNSGKWEEALSLLREMPTMGADPNIASYTATIKACG 647

Query: 626 EKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
             G+ +    +  ++    +  D    +       N G  + A+E L+ ++
Sbjct: 648 NGGQWERAVELFRELPSAGITADVQAYNACVQACGNSGAVDQAVELLREMA 698



 Score = 52.4 bits (124), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 58/279 (20%), Positives = 110/279 (39%), Gaps = 15/279 (5%)

Query: 348 MEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT---NPKPFSAFLAA 404
           +EV++ M++  L P   T       C K  E   + ALL ++S      N   +   + A
Sbjct: 234 LEVMRQMREAGLTPDALTYTNAIKACGKGREWRRSVALLKEMSAHGVELNSIHYVCAMTA 293

Query: 405 CDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINA 463
           C        A+ +  +M+   + P++  Y    +  G        G     VD  + +NA
Sbjct: 294 CKISGMGAEAVGLLREMQAAGIEPNVICYNTAIAACGT------GGQSEVAVDLLEEMNA 347

Query: 464 IEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQ 523
           + +   R N Q    +++        E  +  +++   ++        Y   + +    +
Sbjct: 348 LGV---RPNTQTCLAAVRAAGDRDRGEQAV-SVLRSMSEAGVAAEAKCYAVTIKACGRGR 403

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
              RA+E+ ++M+  G+ P    Y+  I  C   + ++ A AL+  M   G  P  ++Y+
Sbjct: 404 RWARALELLREMEKNGVEPIVMGYDACIAACGDGKQWEQAVALLREMPTVGVTPTVVSYS 463

Query: 584 ALIKILLDYGDFDEALNLLDLVSLE-GIPHDVLLYNTIL 621
             I        +  AL LL  +  E GI  D + YN  +
Sbjct: 464 HAIAACGQSYQWKPALELLREMPQEAGINPDAVCYNNCM 502


>gi|6633829|gb|AAF19688.1|AC009519_22 F1N19.15 [Arabidopsis thaliana]
          Length = 1048

 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 79/344 (22%), Positives = 144/344 (41%), Gaps = 22/344 (6%)

Query: 312  AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
            A  L+  M   G  P+   Y+  I  +  +R L N +EV   M++  ++    T  TL  
Sbjct: 693  AVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLIS 752

Query: 372  ECSKALE-LDLAEALLDQISRCTNPKPFSAFLAACDTMDKPE---RAIKIFAKM-RQKLR 426
              S +    D A  L D + R  +P     F A  DT  K      A  ++ +M R+ + 
Sbjct: 753  GLSNSGRWTDAARLLRDMVKRKIDPNVI-FFTALIDTFVKEGNLLEARNLYKEMIRRSVV 811

Query: 427  PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKA 486
            P++ TY  L + F       +   MF  + S      +             ++   L+  
Sbjct: 812  PNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDV-------------VTYNTLITG 858

Query: 487  LGAEGMIRELIQYFCD--SKTPLGTP-TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPN 543
                  + + ++ FC+   +  +G   TYNT++H   +A + + A ++F +M  CG+ P+
Sbjct: 859  FCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPD 918

Query: 544  AATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLD 603
              TYNI++DC       + A  +V  + +       +TY  +I+ L       EA  L  
Sbjct: 919  IVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFR 978

Query: 604  LVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
             ++ +G+  D + Y T++   C KG     + +  +M ++   P
Sbjct: 979  SLTRKGVKPDAIAYITMISGLCRKGLQREADKLCRRMKEDGFMP 1022



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/211 (22%), Positives = 93/211 (44%), Gaps = 13/211 (6%)

Query: 462 NAIEMD--MARNNIQHSHISMKNLLKALGAEG-------MIRELIQYFCDSKTPLGTPTY 512
           NA+E+   M +  I+   ++   L+  L   G       ++R++++   D         +
Sbjct: 727 NALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIF----F 782

Query: 513 NTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVR 572
             ++ + V+      A  ++K+M    + PN  TYN +I+   I  C   A  +  +MV 
Sbjct: 783 TALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVS 842

Query: 573 DGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDV 632
            G +P  +TY  LI         ++ + L   ++ +G+  D   YNT++   C+ G+++V
Sbjct: 843 KGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNV 902

Query: 633 IEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
            + +  +M    V PD  T + +     N G
Sbjct: 903 AQKVFNRMVDCGVSPDIVTYNILLDCLCNNG 933



 Score = 69.7 bits (169), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 82/419 (19%), Positives = 179/419 (42%), Gaps = 26/419 (6%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           +SF+ +IH   R      A  ++ +M  LG +PS  T+   +        + +   ++ +
Sbjct: 107 YSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVIL 166

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAA-CDTMD 409
           M ++  +P      TL     K  EL++A  LL+++ +     +   ++  L   C +  
Sbjct: 167 MVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGR 226

Query: 410 KPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
             + A  +   M++ + PD+ T+  L  +F       ++GN+    D A+ +     +M 
Sbjct: 227 WSDAARMLRDMMKRSINPDVVTFTALIDVF------VKQGNL----DEAQELYK---EMI 273

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLG----TPTYNTVLHSLVEAQES 525
           ++++  ++++  +++  L   G + +  + F D     G      TYNT++    + +  
Sbjct: 274 QSSVDPNNVTYNSIINGLCMHGRLYDAKKTF-DLMASKGCFPNVVTYNTLISGFCKFRMV 332

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
              M++F++M   G   +  TYN +I     +   + A  +   MV     P  +T+  L
Sbjct: 333 DEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCIL 392

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           +  L   G+ + AL   D +        ++ YN ++   C+  +++    +  ++    V
Sbjct: 393 LHGLCVNGEIESALVKFDDMRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEGV 452

Query: 646 QPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMR-MLCE---EVSTLEEKRSDFEDLILA 700
           +PD  T   +  G    G    A E ++ +    ++C+   E   LEE  S  +++ L+
Sbjct: 453 KPDARTYTIMILGLCKNGPRREADELIRRMKEEGIICQMNAEDDHLEEHSSSNKEISLS 511



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 86/198 (43%), Gaps = 6/198 (3%)

Query: 479 SMKNLLKALGAEGMIR--ELIQYFCDSKTPLGTP----TYNTVLHSLVEAQESHRAMEIF 532
           S+ +  + L A   +R  E + YF       G      ++  ++H          A+ + 
Sbjct: 70  SIVDFTRLLTATANLRRYETVIYFSQKMELYGISHDLYSFTILIHCFCRCSRLSFALSVL 129

Query: 533 KQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDY 592
            +M   G  P+  T+  ++    ++     A +LV +MV+ G+ P  + Y  LI  L   
Sbjct: 130 GKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKSGYEPNVVVYNTLIDGLCKN 189

Query: 593 GDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTC 652
           G+ + AL LL+ +  +G+  DV+ YNT+L   C  GR      ++  M +  + PD  T 
Sbjct: 190 GELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTF 249

Query: 653 HFVFSGYVNCGFHNSAME 670
             +   +V  G  + A E
Sbjct: 250 TALIDVFVKQGNLDEAQE 267



 Score = 66.6 bits (161), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 91/196 (46%), Gaps = 5/196 (2%)

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLG----TPTYNTVLHSLVEAQ 523
           M +   + S +++ +LL         +E +    DS    G       YNTV++ L + +
Sbjct: 665 MMKLGFRPSIVTLGSLLNGFCQGNRFQEAVS-LVDSMDGFGFVPNVVIYNTVINGLCKNR 723

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
           + + A+E+F  M+  GI  +A TYN +I   S    +  A+ L+  MV+    P  + +T
Sbjct: 724 DLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFT 783

Query: 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
           ALI   +  G+  EA NL   +    +  +V  YN+++   C  G +   +++ + M   
Sbjct: 784 ALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSK 843

Query: 644 KVQPDPSTCHFVFSGY 659
              PD  T + + +G+
Sbjct: 844 GCFPDVVTYNTLITGF 859



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 126/646 (19%), Positives = 252/646 (39%), Gaps = 80/646 (12%)

Query: 59  IVDALCR-GERSRASHLLLNLGHAHHSLGAD-----DFFHILNYCARSPDPLFVMETWRM 112
           ++D LC+ GE + A  LL  +      LGAD          L Y  R  D   ++   R 
Sbjct: 182 LIDGLCKNGELNIALELLNEM--EKKGLGADVVTYNTLLTGLCYSGRWSDAARML---RD 236

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
           M ++ I  +   +  ++    K G L+EA  L Y    +  + P    YNS +       
Sbjct: 237 MMKRSINPDVVTFTALIDVFVKQGNLDEAQEL-YKEMIQSSVDPNNVTYNSIINGLCMHG 295

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDY-IKHYSLSIFSLR 231
            +  A    DLM S+    N VTY  L+      + +    ++++    + ++  IF+  
Sbjct: 296 RLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYN 355

Query: 232 KFVWSFTRLRDLKSAYETLQHMVA----------LAMMGKLYINRTSEGRLRSSRLDIPI 281
             +  + ++  L+ A +    MV+            ++  L +N    G + S+ +    
Sbjct: 356 TLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILLHGLCVN----GEIESALVKFDD 411

Query: 282 PLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSD 341
              +   + ++ ++   +IH   +      A +L  ++   G++P + TY   I  +  +
Sbjct: 412 MRESEKYIGIVAYNI--MIHGLCKADKVEKAWELFCRLPVEGVKPDARTYTIMILGLCKN 469

Query: 342 RGLRNGMEVLKIMQQNNLKPQ-DSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSA 400
              R   E+++ M++  +  Q ++    L    S   E+ L+   L +I   +   PF  
Sbjct: 470 GPRREADELIRRMKEEGIICQMNAEDDHLEEHSSSNKEISLS---LREIWERSKSNPFWM 526

Query: 401 FLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKR 460
                      +R I I       ++  +R + LL                       +R
Sbjct: 527 -----------QRLIPI--AFSSSVKGFVRRHYLLL----------------------ER 551

Query: 461 INAIEMDMARNNIQHSHI-----SMKNLLKALGAEGMIRELIQYFCDSKTPLGTPT---Y 512
            N  E  ++R+    SH       ++N L  +  +    +    FC+       P+   +
Sbjct: 552 GNNPETSLSRSFSGASHHHHYRERLRNELHCIKFD----DAFSLFCEMLQSRPIPSIVDF 607

Query: 513 NTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVR 572
             VL  + +  +    + ++ +M+  GI  +  ++ I+I C         A AL+  M++
Sbjct: 608 TRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFTILIHCFCRCSRLSLALALLGKMMK 667

Query: 573 DGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDV 632
            GF P  +T  +L+        F EA++L+D +   G   +V++YNT++   C+   ++ 
Sbjct: 668 LGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNN 727

Query: 633 IEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678
              +   M +  ++ D  T + + SG  N G    A   L+ +  R
Sbjct: 728 ALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKR 773



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/249 (22%), Positives = 97/249 (38%), Gaps = 17/249 (6%)

Query: 414 AIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNN 472
           A+++F  M +K +R D  TY  L S   N              D+A+ +     DM +  
Sbjct: 728 ALEVFYCMEKKGIRADAVTYNTLISGLSNSG---------RWTDAARLLR----DMVKRK 774

Query: 473 IQHSHISMKNLLKALGAEGMI---RELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAM 529
           I  + I    L+     EG +   R L +            TYN++++          A 
Sbjct: 775 IDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAK 834

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
            +F  M + G  P+  TYN +I      +  +    L   M   G      TY  LI   
Sbjct: 835 YMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGY 894

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649
              G  + A  + + +   G+  D++ YN +L   C  G+I+    ++E + ++++  D 
Sbjct: 895 CQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDI 954

Query: 650 STCHFVFSG 658
            T + +  G
Sbjct: 955 ITYNIIIQG 963



 Score = 46.6 bits (109), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 46/225 (20%), Positives = 89/225 (39%), Gaps = 8/225 (3%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           T  ++L+   +      A+ +   M   G  PN   YN +I+     R   +A  +   M
Sbjct: 676 TLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCM 735

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
            + G     +TY  LI  L + G + +A  LL  +    I  +V+ +  ++    ++G +
Sbjct: 736 EKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNL 795

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEK 690
                + ++M +  V P+  T + + +G+   G    A     ++  +    +V T    
Sbjct: 796 LEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTL 855

Query: 691 RSDFEDLILAEDSEAESRILQFCEDSNENL---AFTAALLQLRWC 732
            + F      +    E  +  FCE + + L   AFT   L   +C
Sbjct: 856 ITGF-----CKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYC 895


>gi|222625337|gb|EEE59469.1| hypothetical protein OsJ_11675 [Oryza sativa Japonica Group]
          Length = 1095

 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 122/554 (22%), Positives = 218/554 (39%), Gaps = 80/554 (14%)

Query: 150 ERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNL 209
           E+ GI   L  YN  +    KL     A L L  M    +  +E +Y  L+     +  +
Sbjct: 291 EKNGIEADLYTYNIMIDKLCKLKRSARAYLLLKRMREVNLTPDECSYNTLIHGFFGEGKI 350

Query: 210 SAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSE 269
           +    I+   ++       SL+  V ++T L D                 G     RT E
Sbjct: 351 NLAIYIFNQMLRQ------SLKPSVATYTALID-----------------GYCRNGRTDE 387

Query: 270 GR----------LRSSRLDIPIPLN----------ALPVMKVLRWS--------FSDVIH 301
            R          +R S L     LN          AL ++K LR          ++ +I 
Sbjct: 388 ARRVLYEMQITGVRPSELTYSALLNGYCKHSKLGPALDLIKYLRSRSISINRTMYTILID 447

Query: 302 ACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKP 361
              +      A+Q++  M + G+ P   TY   I  +     +    E+L  MQ++ + P
Sbjct: 448 GFCQLGEVSKAKQILKCMLADGIDPDVITYSALINGMCKMGMIHETKEILSRMQKSGVLP 507

Query: 362 QDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAAC--DTMDKPERAIK 416
            +    TL     KA     A      I R     N    +A L +   + M       K
Sbjct: 508 NNVLYTTLVFYFCKAGHAKEALKYFVDIYRSGLVANSVIHNALLCSFYREGMIAEAEQFK 567

Query: 417 IFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNM---FSQVDSAKRINAIEMDMARNNI 473
            +   R K+  D+ ++  +      +++  + GN+   FS  D          +M R+  
Sbjct: 568 QYMS-RMKISFDVASFNCI------IDSYCQRGNVLEAFSVYD----------NMVRHGW 610

Query: 474 QHSHISMKNLLKALGAEGMI---RELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAME 530
                +  +LL+ L   G +   +E + Y  +    +   T NT+L  + +      A++
Sbjct: 611 PPDICTYGSLLRGLCQGGHLVQAKEFMVYLLEKACAIDEKTLNTLLVGICKHGTLDEALD 670

Query: 531 IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590
           + ++M T  I P+  TY I++D          A  L+ MM+  G  P T+ YT L+  L+
Sbjct: 671 LCEKMVTRNILPDTYTYTILLDGFCKRGKVVPALILLQMMLEKGLVPDTIAYTCLLNGLV 730

Query: 591 DYGDFDEALNLL-DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649
           + G    A  +  +++  EG+  D + YN+++    + G+I+ IE ++  MH+N+V P  
Sbjct: 731 NEGQVKAASYMFQEIICKEGLYADCIAYNSMMNGYLKGGQINEIERLMRNMHENEVYPSS 790

Query: 650 STCHFVFSGYVNCG 663
           ++ + +  GY+  G
Sbjct: 791 ASYNILMHGYIKKG 804



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 81/371 (21%), Positives = 153/371 (41%), Gaps = 26/371 (7%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           AE ++ +M++  L P++ TY+  +   V     ++ + +L  M++N ++    T   +  
Sbjct: 249 AESMLQKMKNCRL-PNAVTYNTILNWYVKKGRCKSALRILDDMEKNGIEADLYTYNIMID 307

Query: 372 ECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDKPERAIKIFAKM-RQKLR 426
           +  K      A  LL ++ R  N  P    ++  +       K   AI IF +M RQ L+
Sbjct: 308 KLCKLKRSARAYLLLKRM-REVNLTPDECSYNTLIHGFFGEGKINLAIYIFNQMLRQSLK 366

Query: 427 PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKA 486
           P + TY  L      ++     G    + D A+R+     +M    ++ S ++   LL  
Sbjct: 367 PSVATYTAL------IDGYCRNG----RTDEARRV---LYEMQITGVRPSELTYSALLNG 413

Query: 487 LGAE---GMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPN 543
                  G   +LI+Y       +    Y  ++    +  E  +A +I K M   GI P+
Sbjct: 414 YCKHSKLGPALDLIKYLRSRSISINRTMYTILIDGFCQLGEVSKAKQILKCMLADGIDPD 473

Query: 544 AATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLD 603
             TY+ +I+    +        ++S M + G  P  + YT L+      G   EAL    
Sbjct: 474 VITYSALINGMCKMGMIHETKEILSRMQKSGVLPNNVLYTTLVFYFCKAGHAKEALKYFV 533

Query: 604 LVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
            +   G+  + +++N +L     +G I   E   + M + K+  D ++ + +   Y   G
Sbjct: 534 DIYRSGLVANSVIHNALLCSFYREGMIAEAEQFKQYMSRMKISFDVASFNCIIDSYCQRG 593

Query: 664 FHNSAMEALQV 674
              + +EA  V
Sbjct: 594 ---NVLEAFSV 601



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 131/628 (20%), Positives = 241/628 (38%), Gaps = 75/628 (11%)

Query: 52  SKATQMQIVDALCRGERS-RASHLLLNLGHAHHSLGADDFFHILN-YCARSP-DPLFVME 108
           S AT   ++D  CR  R+  A  +L  +           +  +LN YC  S   P   ++
Sbjct: 368 SVATYTALIDGYCRNGRTDEARRVLYEMQITGVRPSELTYSALLNGYCKHSKLGP--ALD 425

Query: 109 TWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGAC 168
             + +  + I +N   Y +++   C+ G + +A  ++  +    GI P +  Y++ +   
Sbjct: 426 LIKYLRSRSISINRTMYTILIDGFCQLGEVSKAKQILKCMLAD-GIDPDVITYSALINGM 484

Query: 169 AKLHSMVHANLCLDLMDSRMVGKNEVTYTELL----KLAVWQKNLSAVHEIWEDYIKHYS 224
            K+  +      L  M    V  N V YT L+    K    ++ L    +I+   +   S
Sbjct: 485 CKMGMIHETKEILSRMQKSGVLPNNVLYTTLVFYFCKAGHAKEALKYFVDIYRSGLVANS 544

Query: 225 LSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLN 284
           +   +L   + SF R           + M+A A   K Y+          SR+ I   + 
Sbjct: 545 VIHNAL---LCSFYR-----------EGMIAEAEQFKQYM----------SRMKISFDVA 580

Query: 285 ALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGL 344
                     SF+ +I +  +  N   A  +   M   G  P   TY   +R +     L
Sbjct: 581 ----------SFNCIIDSYCQRGNVLEAFSVYDNMVRHGWPPDICTYGSLLRGLCQGGHL 630

Query: 345 RNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPKPFS--AF 401
               E +  + +      + T+ TL V   K   LD A  L ++ ++R   P  ++    
Sbjct: 631 VQAKEFMVYLLEKACAIDEKTLNTLLVGICKHGTLDEALDLCEKMVTRNILPDTYTYTIL 690

Query: 402 LAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKR 460
           L       K   A+ +   M +K L PD   Y  L +   N         MF ++   + 
Sbjct: 691 LDGFCKRGKVVPALILLQMMLEKGLVPDTIAYTCLLNGLVNEGQVKAASYMFQEIICKEG 750

Query: 461 INAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLV 520
           + A   D    N      SM N     G    I  L++   +++    + +YN ++H  +
Sbjct: 751 LYA---DCIAYN------SMMNGYLKGGQINEIERLMRNMHENEVYPSSASYNILMHGYI 801

Query: 521 EAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTM 580
           +  +  R + +++ M   GI P+  TY ++I         + A   +  MV +G +P  +
Sbjct: 802 KKGQLSRTLYLYRDMVKEGIKPDNVTYRLLIFGLCEYGLIEIAVKFLEKMVLEGVFPDNL 861

Query: 581 TYTALIKI------------LLDY----GDFDEALNLL-DLVSLEGIPHDVLLYNTILKK 623
            +  LIK             L  Y    GD D A  L  D+ +L  +P +V   ++I++ 
Sbjct: 862 AFDILIKAFSEKSKMSNALQLFSYMKWVGDIDGAFELKEDMKALGVVPSEV-AESSIVRG 920

Query: 624 ACEKGRIDVIEFIIEQMHQNKVQPDPST 651
            C+ G+++    +   + +  + P  +T
Sbjct: 921 LCKCGKVEEAIIVFSSIMRAGMVPTIAT 948



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 91/395 (23%), Positives = 160/395 (40%), Gaps = 34/395 (8%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTY----DGFIRAIVSDRGLRNGMEV 350
           S++ +IH         LA  +  QM    L+PS  TY    DG+ R   +D   R    V
Sbjct: 336 SYNTLIHGFFGEGKINLAIYIFNQMLRQSLKPSVATYTALIDGYCRNGRTDEARR----V 391

Query: 351 LKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI---SRCTNPKPFSAFLAACDT 407
           L  MQ   ++P + T + L     K  +L  A  L+  +   S   N   ++  +     
Sbjct: 392 LYEMQITGVRPSELTYSALLNGYCKHSKLGPALDLIKYLRSRSISINRTMYTILIDGFCQ 451

Query: 408 MDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM 466
           + +  +A +I   M    + PD+ TY  L +    +   +E   + S+            
Sbjct: 452 LGEVSKAKQILKCMLADGIDPDVITYSALINGMCKMGMIHETKEILSR------------ 499

Query: 467 DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCD-SKTPLGTPTYNTVLHSLVEAQES 525
            M ++ +  +++    L+      G  +E ++YF D  ++ L     N+V+H+ +     
Sbjct: 500 -MQKSGVLPNNVLYTTLVFYFCKAGHAKEALKYFVDIYRSGL---VANSVIHNALLCSFY 555

Query: 526 HRAM----EIFKQ-MKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTM 580
              M    E FKQ M    I  + A++N +ID          A ++   MVR G+ P   
Sbjct: 556 REGMIAEAEQFKQYMSRMKISFDVASFNCIIDSYCQRGNVLEAFSVYDNMVRHGWPPDIC 615

Query: 581 TYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQM 640
           TY +L++ L   G   +A   +  +  +    D    NT+L   C+ G +D    + E+M
Sbjct: 616 TYGSLLRGLCQGGHLVQAKEFMVYLLEKACAIDEKTLNTLLVGICKHGTLDEALDLCEKM 675

Query: 641 HQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
               + PD  T   +  G+   G    A+  LQ++
Sbjct: 676 VTRNILPDTYTYTILLDGFCKRGKVVPALILLQMM 710



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 71/168 (42%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TYNT+L+  V+      A+ I   M+  GI  +  TYNIMID    ++    A  L+  M
Sbjct: 266 TYNTILNWYVKKGRCKSALRILDDMEKNGIEADLYTYNIMIDKLCKLKRSARAYLLLKRM 325

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
                 P   +Y  LI      G  + A+ + + +  + +   V  Y  ++   C  GR 
Sbjct: 326 REVNLTPDECSYNTLIHGFFGEGKINLAIYIFNQMLRQSLKPSVATYTALIDGYCRNGRT 385

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678
           D    ++ +M    V+P   T   + +GY        A++ ++ L  R
Sbjct: 386 DEARRVLYEMQITGVRPSELTYSALLNGYCKHSKLGPALDLIKYLRSR 433



 Score = 57.0 bits (136), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 64/305 (20%), Positives = 115/305 (37%), Gaps = 39/305 (12%)

Query: 313  EQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVE 372
            E+LM  M    + PSS +Y+  +   +    L   + + + M +  +KP + T       
Sbjct: 775  ERLMRNMHENEVYPSSASYNILMHGYIKKGQLSRTLYLYRDMVKEGIKPDNVTY------ 828

Query: 373  CSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMR-QKLRPDIRT 431
              + L   L E  L +I                        A+K   KM  + + PD   
Sbjct: 829  --RLLIFGLCEYGLIEI------------------------AVKFLEKMVLEGVFPDNLA 862

Query: 432  YELLFSLFGNVNAPYEEGNMFSQVDSAKRINA---IEMDMARNNIQHSHISMKNLLKALG 488
            +++L   F   +       +FS +     I+    ++ DM    +  S ++  ++++ L 
Sbjct: 863  FDILIKAFSEKSKMSNALQLFSYMKWVGDIDGAFELKEDMKALGVVPSEVAESSIVRGLC 922

Query: 489  AEGMIRELIQYFCDSKTPLGTPT---YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAA 545
              G + E I  F         PT   + T++H L +  +   A  + + M++CG+  +  
Sbjct: 923  KCGKVEEAIIVFSSIMRAGMVPTIATFTTLMHGLCKEFKIDDAFHLKQLMESCGLKVDVV 982

Query: 546  TYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLV 605
            TYN++I      +C   A  L   M   G  P   TY  L   +   G   +   LL  +
Sbjct: 983  TYNVLITGLCNKKCICDALDLYEEMKSKGLLPNITTYITLTGAMYATGTMQDGEKLLKDI 1042

Query: 606  SLEGI 610
               GI
Sbjct: 1043 EDRGI 1047



 Score = 49.3 bits (116), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 73/158 (46%), Gaps = 3/158 (1%)

Query: 513 NTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC-CSIIRCFKSASALVSMMV 571
           N +L++LV   +S       K+      P +  T NI+++  C+  +  K+ S L  M  
Sbjct: 199 NNILNALVGINKSEYVWLFLKESLDRKFPLDVTTCNIVLNSLCTQGKLSKAESMLQKM-- 256

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
           ++   P  +TY  ++   +  G    AL +LD +   GI  D+  YN ++ K C+  R  
Sbjct: 257 KNCRLPNAVTYNTILNWYVKKGRCKSALRILDDMEKNGIEADLYTYNIMIDKLCKLKRSA 316

Query: 632 VIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAM 669
               ++++M +  + PD  + + +  G+   G  N A+
Sbjct: 317 RAYLLLKRMREVNLTPDECSYNTLIHGFFGEGKINLAI 354



 Score = 48.9 bits (115), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 90/208 (43%), Gaps = 27/208 (12%)

Query: 467  DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQ 523
            DM +  I+  +++ + L+  L   G+I   +++          P    ++ ++ +  E  
Sbjct: 815  DMVKEGIKPDNVTYRLLIFGLCEYGLIEIAVKFLEKMVLEGVFPDNLAFDILIKAFSEKS 874

Query: 524  ESHRAMEIFKQMKTCG-----------------IPPNAATYNIMIDCCSIIRCFKSASAL 566
            +   A+++F  MK  G                 +P   A  +I+   C   +C K   A+
Sbjct: 875  KMSNALQLFSYMKWVGDIDGAFELKEDMKALGVVPSEVAESSIVRGLC---KCGKVEEAI 931

Query: 567  V--SMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKA 624
            +  S ++R G  P   T+T L+  L      D+A +L  L+   G+  DV+ YN ++   
Sbjct: 932  IVFSSIMRAGMVPTIATFTTLMHGLCKEFKIDDAFHLKQLMESCGLKVDVVTYNVLITGL 991

Query: 625  CEKGRI-DVIEFIIEQMHQNKVQPDPST 651
            C K  I D ++ + E+M    + P+ +T
Sbjct: 992  CNKKCICDALD-LYEEMKSKGLLPNITT 1018



 Score = 44.7 bits (104), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 84/206 (40%), Gaps = 8/206 (3%)

Query: 509 TPTYNTVLHSLVEAQESHRAMEIFKQMKTC--GIPPNAATYNIMIDCCSIIRCFKSASAL 566
           T  Y  +L+ LV   +   A  +F+++  C  G+  +   YN M++             L
Sbjct: 719 TIAYTCLLNGLVNEGQVKAASYMFQEI-ICKEGLYADCIAYNSMMNGYLKGGQINEIERL 777

Query: 567 VSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE 626
           +  M  +  YP + +Y  L+   +  G     L L   +  EGI  D + Y  ++   CE
Sbjct: 778 MRNMHENEVYPSSASYNILMHGYIKKGQLSRTLYLYRDMVKEGIKPDNVTYRLLIFGLCE 837

Query: 627 KGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAME-ALQVLSMRMLCEEVS 685
            G I++    +E+M    V PD    +  F   +      S M  ALQ+ S      ++ 
Sbjct: 838 YGLIEIAVKFLEKMVLEGVFPD----NLAFDILIKAFSEKSKMSNALQLFSYMKWVGDID 893

Query: 686 TLEEKRSDFEDLILAEDSEAESRILQ 711
              E + D + L +     AES I++
Sbjct: 894 GAFELKEDMKALGVVPSEVAESSIVR 919


>gi|15232008|ref|NP_187518.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207466|sp|Q9SS81.1|PP221_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g09060
 gi|5923671|gb|AAD56322.1|AC009326_9 hypothetical protein [Arabidopsis thaliana]
 gi|332641194|gb|AEE74715.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 687

 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 89/187 (47%), Gaps = 5/187 (2%)

Query: 482 NLLKALGAEGMIRELIQYFCDSKTPLGTP----TYNTVLHSLVEAQESHRAMEIFKQMKT 537
           +++K  G   M  + +  F   +   G      +YNT+L++ VEA++  +   +F   +T
Sbjct: 83  SVIKTYGKNSMPDQALDVFKRMREIFGCEPAIRSYNTLLNAFVEAKQWVKVESLFAYFET 142

Query: 538 CGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDE 597
            G+ PN  TYN++I      + F+ A   +  M ++GF P   +Y+ +I  L   G  D+
Sbjct: 143 AGVAPNLQTYNVLIKMSCKKKEFEKARGFLDWMWKEGFKPDVFSYSTVINDLAKAGKLDD 202

Query: 598 ALNLLDLVSLEGIPHDVLLYNTILKKAC-EKGRIDVIEFIIEQMHQNKVQPDPSTCHFVF 656
           AL L D +S  G+  DV  YN ++     EK     +E     +  + V P+  T + + 
Sbjct: 203 ALELFDEMSERGVAPDVTCYNILIDGFLKEKDHKTAMELWDRLLEDSSVYPNVKTHNIMI 262

Query: 657 SGYVNCG 663
           SG   CG
Sbjct: 263 SGLSKCG 269



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 80/395 (20%), Positives = 169/395 (42%), Gaps = 27/395 (6%)

Query: 281 IPLNALPVMKVLR---------WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTY 331
           +P  AL V K +R          S++ +++A    +     E L    ++ G+ P+  TY
Sbjct: 93  MPDQALDVFKRMREIFGCEPAIRSYNTLLNAFVEAKQWVKVESLFAYFETAGVAPNLQTY 152

Query: 332 DGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR 391
           +  I+     +        L  M +   KP   + +T+  + +KA +LD A  L D++S 
Sbjct: 153 NVLIKMSCKKKEFEKARGFLDWMWKEGFKPDVFSYSTVINDLAKAGKLDDALELFDEMSE 212

Query: 392 CTNPKPFSAFLAACDTMDKP---ERAIKIFAKMRQ--KLRPDIRTYELLFSLFGNVNAPY 446
                  + +    D   K    + A++++ ++ +   + P+++T+ ++ S         
Sbjct: 213 RGVAPDVTCYNILIDGFLKEKDHKTAMELWDRLLEDSSVYPNVKTHNIMISGLSKCGRVD 272

Query: 447 EEGNMFSQVDSAKRINAIEMDM-ARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKT 505
           +   ++ ++   +R    E D+   +++ H      N+ K   AE +  EL +     K 
Sbjct: 273 DCLKIWERMKQNER----EKDLYTYSSLIHGLCDAGNVDK---AESVFNELDE----RKA 321

Query: 506 PLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASA 565
            +   TYNT+L       +   ++E+++ M+      N  +YNI+I           A+ 
Sbjct: 322 SIDVVTYNTMLGGFCRCGKIKESLELWRIMEHKN-SVNIVSYNILIKGLLENGKIDEATM 380

Query: 566 LVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKAC 625
           +  +M   G+     TY   I  L   G  ++AL ++  V   G   DV  Y +I+   C
Sbjct: 381 IWRLMPAKGYAADKTTYGIFIHGLCVNGYVNKALGVMQEVESSGGHLDVYAYASIIDCLC 440

Query: 626 EKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYV 660
           +K R++    ++++M ++ V+ +   C+ +  G +
Sbjct: 441 KKKRLEEASNLVKEMSKHGVELNSHVCNALIGGLI 475



 Score = 66.6 bits (161), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 94/206 (45%), Gaps = 16/206 (7%)

Query: 475 HSHISMKNLLKALGAEGMIR------ELI---QYFCDSKTPLGTPTYNTVLHSLVEAQES 525
           HS +   ++L+ L    M+       ELI   +  CD    L      +V+ +  +    
Sbjct: 41  HSAVVYHHILRRLSETRMVNHVSRIVELIRSQECKCDEDVAL------SVIKTYGKNSMP 94

Query: 526 HRAMEIFKQMKTC-GIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
            +A+++FK+M+   G  P   +YN +++     + +    +L +     G  P   TY  
Sbjct: 95  DQALDVFKRMREIFGCEPAIRSYNTLLNAFVEAKQWVKVESLFAYFETAGVAPNLQTYNV 154

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
           LIK+     +F++A   LD +  EG   DV  Y+T++    + G++D    + ++M +  
Sbjct: 155 LIKMSCKKKEFEKARGFLDWMWKEGFKPDVFSYSTVINDLAKAGKLDDALELFDEMSERG 214

Query: 645 VQPDPSTCHFVFSGYVNCGFHNSAME 670
           V PD +  + +  G++    H +AME
Sbjct: 215 VAPDVTCYNILIDGFLKEKDHKTAME 240



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 72/360 (20%), Positives = 145/360 (40%), Gaps = 22/360 (6%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A   +  M   G +P   +Y   I  +     L + +E+   M +  + P D T   + +
Sbjct: 168 ARGFLDWMWKEGFKPDVFSYSTVINDLAKAGKLDDALELFDEMSERGVAP-DVTCYNILI 226

Query: 372 -----ECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLR 426
                E      ++L + LL+  S   N K  +  ++      + +  +KI+ +M+Q  R
Sbjct: 227 DGFLKEKDHKTAMELWDRLLEDSSVYPNVKTHNIMISGLSKCGRVDDCLKIWERMKQNER 286

Query: 427 -PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLK 485
             D+ TY  L      ++   + GN    VD A+ +   E+D  + +I    ++   +L 
Sbjct: 287 EKDLYTYSSL------IHGLCDAGN----VDKAESVFN-ELDERKASIDV--VTYNTMLG 333

Query: 486 ALGAEGMIRELIQYF--CDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPN 543
                G I+E ++ +   + K  +   +YN ++  L+E  +   A  I++ M   G   +
Sbjct: 334 GFCRCGKIKESLELWRIMEHKNSVNIVSYNILIKGLLENGKIDEATMIWRLMPAKGYAAD 393

Query: 544 AATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLD 603
             TY I I    +      A  ++  +   G +     Y ++I  L      +EA NL+ 
Sbjct: 394 KTTYGIFIHGLCVNGYVNKALGVMQEVESSGGHLDVYAYASIIDCLCKKKRLEEASNLVK 453

Query: 604 LVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
            +S  G+  +  + N ++       R+    F + +M +N  +P   + + +  G    G
Sbjct: 454 EMSKHGVELNSHVCNALIGGLIRDSRLGEASFFLREMGKNGCRPTVVSYNILICGLCKAG 513



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 74/374 (19%), Positives = 149/374 (39%), Gaps = 24/374 (6%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           +S+S VI+   +      A +L  +M   G+ P    Y+  I   + ++  +  ME+   
Sbjct: 185 FSYSTVINDLAKAGKLDDALELFDEMSERGVAPDVTCYNILIDGFLKEKDHKTAMELWDR 244

Query: 354 MQQN-----NLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTM 408
           + ++     N+K  +  I+ LS +C +  +       + Q  R  +   +S+ +      
Sbjct: 245 LLEDSSVYPNVKTHNIMISGLS-KCGRVDDCLKIWERMKQNEREKDLYTYSSLIHGLCDA 303

Query: 409 DKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMD 467
              ++A  +F ++  +K   D+ TY  +   F       E   ++  ++    +N +  +
Sbjct: 304 GNVDKAESVFNELDERKASIDVVTYNTMLGGFCRCGKIKESLELWRIMEHKNSVNIVSYN 363

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRE--LIQYFCDSKT-PLGTPTYNTVLHSLVEAQE 524
           +              L+K L   G I E  +I     +K       TY   +H L     
Sbjct: 364 I--------------LIKGLLENGKIDEATMIWRLMPAKGYAADKTTYGIFIHGLCVNGY 409

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
            ++A+ + +++++ G   +   Y  +IDC    +  + AS LV  M + G    +    A
Sbjct: 410 VNKALGVMQEVESSGGHLDVYAYASIIDCLCKKKRLEEASNLVKEMSKHGVELNSHVCNA 469

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
           LI  L+      EA   L  +   G    V+ YN ++   C+ G+       +++M +N 
Sbjct: 470 LIGGLIRDSRLGEASFFLREMGKNGCRPTVVSYNILICGLCKAGKFGEASAFVKEMLENG 529

Query: 645 VQPDPSTCHFVFSG 658
            +PD  T   +  G
Sbjct: 530 WKPDLKTYSILLCG 543



 Score = 49.3 bits (116), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 90/544 (16%), Positives = 195/544 (35%), Gaps = 92/544 (16%)

Query: 93  ILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERY 152
           ++N  A++      +E +  M E+ +  +  CY +++    K    + A  L   L E  
Sbjct: 190 VINDLAKAGKLDDALELFDEMSERGVAPDVTCYNILIDGFLKEKDHKTAMELWDRLLEDS 249

Query: 153 GIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAV 212
            +YP +  +N  +   +K   +       + M      K+  TY+ L+       N+   
Sbjct: 250 SVYPNVKTHNIMISGLSKCGRVDDCLKIWERMKQNEREKDLYTYSSLIHGLCDAGNVDKA 309

Query: 213 HEIWEDYI-KHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGR 271
             ++ +   +  S+ + +    +  F R   +K + E  + M     +  +  N   +G 
Sbjct: 310 ESVFNELDERKASIDVVTYNTMLGGFCRCGKIKESLELWRIMEHKNSVNIVSYNILIKGL 369

Query: 272 LRSSRLDIPIPL------------------------------NALPVMKVLR-------- 293
           L + ++D    +                               AL VM+ +         
Sbjct: 370 LENGKIDEATMIWRLMPAKGYAADKTTYGIFIHGLCVNGYVNKALGVMQEVESSGGHLDV 429

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           ++++ +I    + +    A  L+ +M   G++ +SH  +  I  ++ D  L      L+ 
Sbjct: 430 YAYASIIDCLCKKKRLEEASNLVKEMSKHGVELNSHVCNALIGGLIRDSRLGEASFFLRE 489

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPER 413
           M +N  +P   +   L     KA +   A A + ++                        
Sbjct: 490 MGKNGCRPTVVSYNILICGLCKAGKFGEASAFVKEM------------------------ 525

Query: 414 AIKIFAKMRQKLRPDIRTYELLFSLF---GNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
                  +    +PD++TY +L         ++   E  + F Q       + +E D+  
Sbjct: 526 -------LENGWKPDLKTYSILLCGLCRDRKIDLALELWHQFLQ-------SGLETDVMM 571

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHR 527
           +NI         L+  L + G + + +    + +    T    TYNT++    +  +S+R
Sbjct: 572 HNI---------LIHGLCSVGKLDDAMTVMANMEHRNCTANLVTYNTLMEGFFKVGDSNR 622

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A  I+  M   G+ P+  +YN ++    + R    A          G +P   T+  L++
Sbjct: 623 ATVIWGYMYKMGLQPDIISYNTIMKGLCMCRGVSYAMEFFDDARNHGIFPTVYTWNILVR 682

Query: 588 ILLD 591
            +++
Sbjct: 683 AVVN 686



 Score = 48.1 bits (113), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 73/162 (45%), Gaps = 4/162 (2%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKS--ASALVS 568
           +YN ++  L +A +   A    K+M   G  P+  TY+I++  C + R  K   A  L  
Sbjct: 501 SYNILICGLCKAGKFGEASAFVKEMLENGWKPDLKTYSILL--CGLCRDRKIDLALELWH 558

Query: 569 MMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
             ++ G     M +  LI  L   G  D+A+ ++  +       +++ YNT+++   + G
Sbjct: 559 QFLQSGLETDVMMHNILIHGLCSVGKLDDAMTVMANMEHRNCTANLVTYNTLMEGFFKVG 618

Query: 629 RIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAME 670
             +    I   M++  +QPD  + + +  G   C   + AME
Sbjct: 619 DSNRATVIWGYMYKMGLQPDIISYNTIMKGLCMCRGVSYAME 660



 Score = 45.1 bits (105), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 43/200 (21%), Positives = 88/200 (44%), Gaps = 7/200 (3%)

Query: 467 DMARNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQ 523
           +M +N  + + +S   L+  L   G   E    ++   ++       TY+ +L  L   +
Sbjct: 489 EMGKNGCRPTVVSYNILICGLCKAGKFGEASAFVKEMLENGWKPDLKTYSILLCGLCRDR 548

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMI-DCCSIIRCFKSASALVSMMVRDGFYPQTMTY 582
           +   A+E++ Q    G+  +   +NI+I   CS+ +   + + + +M  R+      +TY
Sbjct: 549 KIDLALELWHQFLQSGLETDVMMHNILIHGLCSVGKLDDAMTVMANMEHRN-CTANLVTY 607

Query: 583 TALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE-KGRIDVIEFIIEQMH 641
             L++     GD + A  +   +   G+  D++ YNTI+K  C  +G    +EF  +   
Sbjct: 608 NTLMEGFFKVGDSNRATVIWGYMYKMGLQPDIISYNTIMKGLCMCRGVSYAMEF-FDDAR 666

Query: 642 QNKVQPDPSTCHFVFSGYVN 661
            + + P   T + +    VN
Sbjct: 667 NHGIFPTVYTWNILVRAVVN 686


>gi|413920484|gb|AFW60416.1| hypothetical protein ZEAMMB73_230014 [Zea mays]
          Length = 700

 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/355 (20%), Positives = 142/355 (40%), Gaps = 49/355 (13%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           AEQ++  +   GL P++  Y+  I      R LR    + + M+  +++P          
Sbjct: 353 AEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRP---------- 402

Query: 372 ECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIR 430
                          D I+       ++A +     ++   +A  +  +M +  + P + 
Sbjct: 403 ---------------DHIT-------YNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVE 440

Query: 431 TYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAE 490
           T+  L   +G                  ++   +  DM +  I+   IS  +++KA    
Sbjct: 441 TFNTLIDAYGTAG-------------QLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKN 487

Query: 491 GMIRELIQYFCD---SKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATY 547
           G I E +    D            YN+++ + +E+ ++ +A  + ++MK  G+  +  TY
Sbjct: 488 GKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTY 547

Query: 548 NIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSL 607
           N+++           A  L+  +   G  P  ++Y  +I    + GD D+AL LL  ++ 
Sbjct: 548 NLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNK 607

Query: 608 EGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNC 662
            GI   +  Y+T++      GR+  +E + +QM    V+P  S    +   YV C
Sbjct: 608 YGIRPTLRTYHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYVRC 662



 Score = 79.0 bits (193), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 74/373 (19%), Positives = 146/373 (39%), Gaps = 47/373 (12%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           +S++ VI    R+     A ++  +M  +G+ P+  TY+  I   V    L  G  +   
Sbjct: 195 FSYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGHVKGGDLEAGFRLRDQ 254

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPER 413
           M  +  KP   T   L     +A  +D    L+D+++                       
Sbjct: 255 MLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMAS---------------------- 292

Query: 414 AIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNI 473
                      + PD  TY +LF             +  ++   ++ + ++  +  +  +
Sbjct: 293 ---------HSMFPDGFTYSILF-------------DGLTRTGESRTMLSLFAESLKKGV 330

Query: 474 QHSHISMKNLLKALGAEGMI---RELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAME 530
                +   LL  L  +G +    ++++    +     T  YNT+++   + ++   A  
Sbjct: 331 MLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFC 390

Query: 531 IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590
           IF+QMK+  I P+  TYN +I+    +     A  LV  M + G  P   T+  LI    
Sbjct: 391 IFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYG 450

Query: 591 DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650
             G  ++   +L  +  +GI  DV+ + +++K  C+ G+I     I++ M    V P+  
Sbjct: 451 TAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQ 510

Query: 651 TCHFVFSGYVNCG 663
             + +   Y+  G
Sbjct: 511 VYNSIIDAYIESG 523



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 108/254 (42%), Gaps = 17/254 (6%)

Query: 414 AIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNN 472
           A  IF +M+ + +RPD  TY  L              N   +++   +   + M+M ++ 
Sbjct: 388 AFCIFEQMKSRHIRPDHITYNALI-------------NGLCKLEMVTKAEDLVMEMEKSG 434

Query: 473 IQHSHISMKNLLKALGAEGMIRELIQYFCDSK---TPLGTPTYNTVLHSLVEAQESHRAM 529
           +  S  +   L+ A G  G + +      D +         ++ +V+ +  +  +   A+
Sbjct: 435 VDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAV 494

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
            I   M    + PNA  YN +ID        + A  LV  M   G     +TY  L+K L
Sbjct: 495 AILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGL 554

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649
                 DEA  L+  +  +G+  DV+ YNTI+   C KG  D    ++++M++  ++P  
Sbjct: 555 CRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTL 614

Query: 650 STCHFVFSGYVNCG 663
            T H + S   + G
Sbjct: 615 RTYHTLVSALASAG 628



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 87/207 (42%), Gaps = 5/207 (2%)

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRA 528
           A N +  + ++  +L  AL    M+R + +   +   P    +YN V+  L  + +   A
Sbjct: 159 AWNKVVQACVAAGDLDVALA---MVRRMGR--SEGAPPPDAFSYNVVIAGLWRSGKGSDA 213

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
           +++F +M   G+ PN  TYN MID        ++   L   M+ DG  P  +TY  L+  
Sbjct: 214 LKVFDEMVDMGVVPNWITYNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNIVTYNVLLSG 273

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
           L   G  DE   L+D ++   +  D   Y+ +       G    +  +  +  +  V   
Sbjct: 274 LCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTRTGESRTMLSLFAESLKKGVMLG 333

Query: 649 PSTCHFVFSGYVNCGFHNSAMEALQVL 675
             TC  + +G    G    A + L++L
Sbjct: 334 AYTCSILLNGLCKDGKVAKAEQVLEML 360



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 71/408 (17%), Positives = 163/408 (39%), Gaps = 48/408 (11%)

Query: 59  IVDALCRGERSRASHLLLNLGHAHHSLGADDFFH--ILNYCARSPDPLFVMETWRMMEEK 116
           ++  LCR  R   + +L++   A HS+  D F +  + +   R+ +   ++  +    +K
Sbjct: 270 LLSGLCRAGRMDETRVLMD-EMASHSMFPDGFTYSILFDGLTRTGESRTMLSLFAESLKK 328

Query: 117 EIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVH 176
            + L      +++  LCK G + +A  ++  L    G+ P   +YN+ +    ++  +  
Sbjct: 329 GVMLGAYTCSILLNGLCKDGKVAKAEQVLEML-VHTGLVPTTVIYNTLINGYCQVRDLRG 387

Query: 177 ANLCLDLMDSRMVGKNEVTYTELL----KLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRK 232
           A    + M SR +  + +TY  L+    KL +  K    V E+ +  +     S+ +   
Sbjct: 388 AFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDP---SVETFNT 444

Query: 233 FVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVL 292
            + ++     L+  +  L  M                 + +  + D+             
Sbjct: 445 LIDAYGTAGQLEKCFTVLSDM-----------------QQKGIKSDV------------- 474

Query: 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
             SF  V+ A  +      A  ++  M    + P++  Y+  I A +          +++
Sbjct: 475 -ISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVE 533

Query: 353 IMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTM 408
            M+ + +     T   L     ++ ++D AE L+  + R    +P    ++  ++AC   
Sbjct: 534 KMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTL-RNQGLRPDVVSYNTIISACCNK 592

Query: 409 DKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQV 455
              ++A+++  +M +  +RP +RTY  L S   +    ++   ++ Q+
Sbjct: 593 GDTDKALELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQM 640


>gi|302784458|ref|XP_002974001.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
 gi|300158333|gb|EFJ24956.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
          Length = 561

 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 74/317 (23%), Positives = 140/317 (44%), Gaps = 19/317 (5%)

Query: 349 EVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTM 408
           + +++ ++    P + T  +L     KA +LD A  LLD++     P   +        +
Sbjct: 16  QAVQLFREERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIKGL 75

Query: 409 DKPER---AIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAI 464
            K  R   A+  F  +   K  PDI T+ +L      V+A  + G    +V+ A +I   
Sbjct: 76  CKAGRFGDALGYFKTVAGTKCTPDIITFNIL------VDALVKSG----RVEEAFQI--F 123

Query: 465 EMDMARNNIQHSHISMKNLLKALGAEGMIR---ELIQYFCDSKTPLGTPTYNTVLHSLVE 521
           E     +    + ++   ++  L  +G +    EL+    ++       TY+ ++  L +
Sbjct: 124 ESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCK 183

Query: 522 AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMT 581
           A  + +   + ++M   G  P+   YN +++     R    A  LV +M+R G YP  +T
Sbjct: 184 AGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVT 243

Query: 582 YTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMH 641
           Y +L+++       D A  L+ ++S  G P DV+ YNT++   C   R+D  + +++QM 
Sbjct: 244 YNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMV 303

Query: 642 QNKVQPDPSTCHFVFSG 658
             +  PD  T   +  G
Sbjct: 304 AARCVPDVITYSTIIDG 320



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 97/416 (23%), Positives = 160/416 (38%), Gaps = 76/416 (18%)

Query: 326 PSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEAL 385
           P+  TY   I  +  D  L   +E+L +M +    P   T + L     KA   D    L
Sbjct: 134 PNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTL 193

Query: 386 LDQISRCTNPKP----FSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFG 440
           L +++R    +P    ++  L       + + A+++   M R    P + TY  L  LF 
Sbjct: 194 LQEMTR-RGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFC 252

Query: 441 NVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL-------GAEGMI 493
                        QVD A R+  +   M+        I+   ++  L        A+ ++
Sbjct: 253 RSK----------QVDRAFRLIQV---MSERGCPPDVINYNTVIAGLCRDARLDDAQALL 299

Query: 494 RELIQYFCDSKTPLGTPTYNTVLHSL-----VEAQ-ESHRAMEIFKQMKTCGIPPNAATY 547
           ++++   C    P    TY+T++  L     V+A  +   A EI + MK  G PPNA TY
Sbjct: 300 KQMVAARC---VP-DVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTY 355

Query: 548 NIMIDCCSIIRCFKSASALV-----------------SMMVR--------DGFY------ 576
            ++I+   + R  KS  AL                  SM++         D  Y      
Sbjct: 356 AVVIE--GLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMM 413

Query: 577 ------PQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
                 P  + Y ALI  L   G+ D+A+ + +L+ +E     V  YN++L   C  GRI
Sbjct: 414 SERECKPNPVAYAALIDGLSKGGEVDKAVRVFELM-VESFRPGVATYNSVLDGLCGVGRI 472

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           +    ++E M   +  PD ++   +  G         A E  Q +  +    EV  
Sbjct: 473 EEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVGV 528



 Score = 70.9 bits (172), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 102/230 (44%), Gaps = 39/230 (16%)

Query: 482 NLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIP 541
           NLL   G  G   + +Q F + +      TY +++H L +A +  +A E+  +M+  GIP
Sbjct: 6   NLLVRAGQHG---QAVQLFREERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIP 62

Query: 542 PNAATYNIMI-DCCSIIRC------FKSASA------------LVSMMVRDG-------- 574
           P  A +N +I   C   R       FK+ +             LV  +V+ G        
Sbjct: 63  PGVAVHNGVIKGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQI 122

Query: 575 ---------FYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKAC 625
                      P  +TYT +I  L   G  D A+ LLDL++  G   +V+ Y+ +++  C
Sbjct: 123 FESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLC 182

Query: 626 EKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
           + GR D    ++++M +   QPD    + + +G       + A+E +Q++
Sbjct: 183 KAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLM 232



 Score = 67.0 bits (162), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 114/547 (20%), Positives = 211/547 (38%), Gaps = 44/547 (8%)

Query: 108 ETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGA 167
           +  ++  E+    N   Y  ++  LCK G L++A  L+  + +R GI P + V+N  +  
Sbjct: 16  QAVQLFREERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDR-GIPPGVAVHNGVIKG 74

Query: 168 CAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSL-- 225
             K      A      +       + +T+  L+   V    +    +I+E    H S   
Sbjct: 75  LCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESM--HTSSQC 132

Query: 226 --SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRT-SEGRLRSSRLDIPIP 282
             ++ +    +    +   L  A E L  M        +       EG  ++ R D    
Sbjct: 133 LPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFT 192

Query: 283 LNALPVMKVLRWSFS-DVI------HACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFI 335
           L    + ++ R  F  DVI      +   +++    A +L+  M   G  P+  TY+  +
Sbjct: 193 L----LQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLM 248

Query: 336 RAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI--SRCT 393
                 + +     ++++M +    P      T+     +   LD A+ALL Q+  +RC 
Sbjct: 249 ELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCV 308

Query: 394 -NPKPFSAFLAA------CDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAP 445
            +   +S  +         D   K E A +I   M+Q    P+  TY ++          
Sbjct: 309 PDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKS 368

Query: 446 YEEGNMFSQ-VDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSK 504
            +   +  + +DS    +     M   ++  SH    +L  A    GM+ E        +
Sbjct: 369 QQALALLRRMIDSEVVPDLSSFSMVIGSLCKSH----DLDAAYKIFGMMSE-------RE 417

Query: 505 TPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID-CCSIIRCFKSA 563
                  Y  ++  L +  E  +A+ +F+ M      P  ATYN ++D  C + R  + A
Sbjct: 418 CKPNPVAYAALIDGLSKGGEVDKAVRVFELMVE-SFRPGVATYNSVLDGLCGVGR-IEEA 475

Query: 564 SALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKK 623
             +V  M+    +P   +Y ALI+ L      +EA  L   V  +G   +V +YN ++ +
Sbjct: 476 VRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVGVYNVLVNE 535

Query: 624 ACEKGRI 630
            C+K R+
Sbjct: 536 LCKKKRL 542



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 86/366 (23%), Positives = 148/366 (40%), Gaps = 26/366 (7%)

Query: 305 RTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDS 364
           R    G A QL  + + +   P+  TY   I  +     L    E+L  M+   + P  +
Sbjct: 10  RAGQHGQAVQLFREERCV---PNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVA 66

Query: 365 TIATLSVECSKALELDLAEALLDQI--SRCT-NPKPFSAFLAACDTMDKPERAIKIFAKM 421
               +     KA     A      +  ++CT +   F+  + A     + E A +IF  M
Sbjct: 67  VHNGVIKGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESM 126

Query: 422 R--QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHIS 479
               +  P++ TY  +      +N   ++G +   ++    +N  E     N I +S + 
Sbjct: 127 HTSSQCLPNVVTYTTV------INGLCKDGKLDRAIELLDLMN--ETGCCPNVITYS-VL 177

Query: 480 MKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCG 539
           ++ L KA G       L+Q             YNT+L+ L +++    A+E+ + M   G
Sbjct: 178 VEGLCKA-GRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSG 236

Query: 540 IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEAL 599
             P   TYN +++     +    A  L+ +M   G  P  + Y  +I  L      D+A 
Sbjct: 237 CYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQ 296

Query: 600 NLL-DLVSLEGIPHDVLLYNTILKKACEKGRIDV---IEF---IIEQMHQNKVQPDPSTC 652
            LL  +V+   +P DV+ Y+TI+   C+  R+D    +E    I+E M Q    P+  T 
Sbjct: 297 ALLKQMVAARCVP-DVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTY 355

Query: 653 HFVFSG 658
             V  G
Sbjct: 356 AVVIEG 361



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 76/380 (20%), Positives = 149/380 (39%), Gaps = 31/380 (8%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           +++  +IH   +      A +L+ +M+  G+ P    ++G I+ +       + +   K 
Sbjct: 31  FTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIKGLCKAGRFGDALGYFKT 90

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI---SRC-TNPKPFSAFLAACDTMD 409
           +      P   T   L     K+  ++ A  + + +   S+C  N   ++  +       
Sbjct: 91  VAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDG 150

Query: 410 KPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
           K +RAI++   M +    P++ TY +L            EG    +     +   +  +M
Sbjct: 151 KLDRAIELLDLMNETGCCPNVITYSVLV-----------EG--LCKAGRTDKGFTLLQEM 197

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQES 525
            R   Q   I    LL  L     + E   L+Q    S       TYN+++     +++ 
Sbjct: 198 TRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQV 257

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMI-DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
            RA  + + M   G PP+   YN +I   C   R    A AL+  MV     P  +TY+ 
Sbjct: 258 DRAFRLIQVMSERGCPPDVINYNTVIAGLCRDAR-LDDAQALLKQMVAARCVPDVITYST 316

Query: 585 LI-------KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFII 637
           +I       ++  D+   + A  +L+++   G P +   Y  +++  C   +      ++
Sbjct: 317 IIDGLCKDWRVDADW-KLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALL 375

Query: 638 EQMHQNKVQPDPSTCHFVFS 657
            +M  ++V PD S+   V  
Sbjct: 376 RRMIDSEVVPDLSSFSMVIG 395



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 90/477 (18%), Positives = 173/477 (36%), Gaps = 77/477 (16%)

Query: 107 METWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLG 166
           +E   +M E     N   Y ++++ LCK G  ++   L+  +  R G  P + +YN+ L 
Sbjct: 156 IELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRR-GFQPDVIMYNTLLN 214

Query: 167 ACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLS-AVHEIWEDYIKHYSL 225
              K   +  A   + LM         VTY  L++L    K +  A   I     +    
Sbjct: 215 GLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPP 274

Query: 226 SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRT-SEGRLRSSRLDIPIPLN 284
            + +    +    R   L  A   L+ MVA   +  +    T  +G  +  R+D    L 
Sbjct: 275 DVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLE 334

Query: 285 ALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGL 344
           A                AC          +++  M+  G  P++ TY   I  +   R  
Sbjct: 335 A----------------AC----------EILEMMKQTGCPPNAGTYAVVIEGLCRARKS 368

Query: 345 RNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQIS--RCT-NPKPFSAF 401
           +  + +L+ M  + + P  S+ + +     K+ +LD A  +   +S   C  NP  ++A 
Sbjct: 369 QQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAAL 428

Query: 402 LAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI 461
           +       + ++A+++F  M +  RP + TY  +      V           +++ A R+
Sbjct: 429 IDGLSKGGEVDKAVRVFELMVESFRPGVATYNSVLDGLCGVG----------RIEEAVRM 478

Query: 462 NAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVE 521
                                       EGMI +  + F D        +Y  ++  L  
Sbjct: 479 ---------------------------VEGMIHK--ECFPDG------ASYGALIRGLCR 503

Query: 522 AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQ 578
                 A E+F+ ++  G       YN++++     +    A  + + ++  G+  Q
Sbjct: 504 VSCVEEAYELFQAVEAKGFAMEVGVYNVLVNELCKKKRLSDAHGVANKLIEAGYKQQ 560


>gi|48716316|dbj|BAD22929.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|48717088|dbj|BAD22861.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
          Length = 933

 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 115/547 (21%), Positives = 210/547 (38%), Gaps = 62/547 (11%)

Query: 161 YNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI 220
           YN+ +    +   +  A   LD+M    V  N  TYT  +      K +    +++E  +
Sbjct: 207 YNTLVAGFCRAGQVDAARGVLDMMKEAGVDPNVATYTPFIVYYCRTKGVEEAFDLYEGMV 266

Query: 221 KH-YSLSIFSLRKFVWSFTRLRDLKSAYETLQHM------------------VALAMMGK 261
           ++   L + +L   V    R      AY   + M                  +A A  GK
Sbjct: 267 RNGVLLDVVTLSALVAGLCRDGRFSEAYALFREMDKVGAAPNHVTYCTLIDSLAKAGRGK 326

Query: 262 LYINRTSEGRLRSSRLDIPIPLNAL-----------PVMKVLRWSFSD-----------V 299
             ++   E   R   +D+ +   AL            V   LR++ SD           +
Sbjct: 327 ELLSLLGEMVSRGVVMDL-VTYTALMDWLGKQGKTDEVKDTLRFALSDNLSPNGVTYTVL 385

Query: 300 IHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNL 359
           I A  +  N   AEQ++L+M+   + P+  T+   I   V    L    E  ++M++  +
Sbjct: 386 IDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKATEYKRMMKERGI 445

Query: 360 KPQDSTIATLSVECSKALELDLA-EALLDQISRCTNPKPF--SAFLAACDTMDKPERAIK 416
            P   T  TL     K    D A E   D +        F   + +       K E A+ 
Sbjct: 446 NPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCEGVKVNKFIVDSLVNGLRQNGKIEEAMA 505

Query: 417 IFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQH 475
           +F       L  D   Y  L      ++  ++ G+M +     + +      M RN +  
Sbjct: 506 LFKDASGSGLSLDHVNYTTL------IDGLFKAGDMPTAFKFGQEL------MDRNMLPD 553

Query: 476 SHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIF 532
           + +     +  L   G  +E   +  + +     P   TYNT++ S     E+ +A+++ 
Sbjct: 554 A-VVYNVFINCLCMLGKFKEAKSFLTEMRNMGLKPDQSTYNTMIVSHCRKGETAKALKLL 612

Query: 533 KQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDY 592
            +MK   I PN  TYN ++         + A  L++ MV  GF P ++T+  +++     
Sbjct: 613 HEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSSLTHRRVLQACSQS 672

Query: 593 GDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTC 652
              D  L++ + +   G+  D+ +YNT+L+  C  G       ++E+M  + + PD  T 
Sbjct: 673 RRLDVILDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRKATVVLEEMLGSGIAPDTITF 732

Query: 653 HFVFSGY 659
           + +  G+
Sbjct: 733 NALILGH 739



 Score = 65.1 bits (157), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 116/590 (19%), Positives = 223/590 (37%), Gaps = 42/590 (7%)

Query: 106 VMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFL 165
           V +T R      +  N   Y +++ ALCK   ++EA  ++  + E+  I P +  ++S +
Sbjct: 363 VKDTLRFALSDNLSPNGVTYTVLIDALCKAHNVDEAEQVLLEMEEK-SISPNVVTFSSVI 421

Query: 166 GACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYS 224
               K   +  A     +M  R +  N VTY  L+      +   A  E++ D + +   
Sbjct: 422 NGFVKRGLLDKATEYKRMMKERGINPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCEGVK 481

Query: 225 LSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTS--EGRLRSSRLDIPIP 282
           ++ F +   V    +   ++ A    +     + +   ++N T+  +G  ++   D+P  
Sbjct: 482 VNKFIVDSLVNGLRQNGKIEEAMALFKDASG-SGLSLDHVNYTTLIDGLFKAG--DMPTA 538

Query: 283 L---------NALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDG 333
                     N LP   V+   F + +   G+ +    A+  + +M+++GL+P   TY+ 
Sbjct: 539 FKFGQELMDRNMLPD-AVVYNVFINCLCMLGKFKE---AKSFLTEMRNMGLKPDQSTYNT 594

Query: 334 FIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRC 392
            I +          +++L  M+ +++KP   T  TL         ++ A+ LL++ +S  
Sbjct: 595 MIVSHCRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAG 654

Query: 393 TNPKPFS--AFLAACDTMDKPERAIKIFA-KMRQKLRPDIRTYELLFSLFGNVNAPYEEG 449
            +P   +    L AC    + +  + I    M   L  DI  Y  L  +           
Sbjct: 655 FSPSSLTHRRVLQACSQSRRLDVILDIHEWMMNAGLHADITVYNTLLQVL---------- 704

Query: 450 NMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLL----KALGAEGMIRELIQYFCDSKT 505
                    ++   +  +M  + I    I+   L+    K+   +       Q    + +
Sbjct: 705 ---CYHGMTRKATVVLEEMLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQNIS 761

Query: 506 PLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASA 565
           P    T+NT+L  L        A  +  +M+  G+ PN  TY+I+            A  
Sbjct: 762 P-NIATFNTLLGGLESVGRIGEAGTVLIEMEKSGLEPNNLTYDILATGHGKQSNKVEAMR 820

Query: 566 LVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKAC 625
           L   MV  GF P+  TY ALI      G   +A  L   +   G+      Y+ ++    
Sbjct: 821 LYCEMVGKGFVPKVSTYNALISDFTKAGMMTQAKELFKDMQKRGVHPTSCTYDILVSGWS 880

Query: 626 EKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
                  ++  ++ M +    P   T  F+   +   G    A   L+ L
Sbjct: 881 RIRNGTEVKKCLKDMKEKGFSPSKGTLSFICRAFSKPGMTWQAQRLLKNL 930



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 84/378 (22%), Positives = 153/378 (40%), Gaps = 42/378 (11%)

Query: 325 QPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEA 384
           +P++  Y+  + A +SD    +   VL  M +  +     T+ TL     +  ++D A A
Sbjct: 100 RPTTVAYN-ILLAALSDHA--HAPAVLAEMCKRGVPFDGVTVNTLLAGLCRNGQVDAAAA 156

Query: 385 LLDQIS--RCTNPKPFSAFLAA-CDTMDKPERAIKIFAKMR-QKLRPDIRTYELLFSLFG 440
           L D+       +   ++  +A  C   D P  A+ +  +M  Q L  D+  Y  L + F 
Sbjct: 157 LADRGGGIHALDVIGWNTLIAGYCRVGDTPA-ALSVADRMTAQGLPMDVVGYNTLVAGFC 215

Query: 441 NVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISM-----------KNLLKALGA 489
                        QVD+A+ +    +DM +      +++            K + +A   
Sbjct: 216 RAG----------QVDAARGV----LDMMKEAGVDPNVATYTPFIVYYCRTKGVEEAFDL 261

Query: 490 -EGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYN 548
            EGM+R  +         L   T + ++  L        A  +F++M   G  PN  TY 
Sbjct: 262 YEGMVRNGVL--------LDVVTLSALVAGLCRDGRFSEAYALFREMDKVGAAPNHVTYC 313

Query: 549 IMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLE 608
            +ID  +     K   +L+  MV  G     +TYTAL+  L   G  DE  + L     +
Sbjct: 314 TLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDEVKDTLRFALSD 373

Query: 609 GIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSA 668
            +  + + Y  ++   C+   +D  E ++ +M +  + P+  T   V +G+V  G  + A
Sbjct: 374 NLSPNGVTYTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKA 433

Query: 669 MEALQVLSMRMLCEEVST 686
            E  +++  R +   V T
Sbjct: 434 TEYKRMMKERGINPNVVT 451



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 106/562 (18%), Positives = 201/562 (35%), Gaps = 85/562 (15%)

Query: 156 PILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEI 215
           P    YN  L A   L    HA   L  M  R V  + VT   LL        + A   +
Sbjct: 101 PTTVAYNILLAA---LSDHAHAPAVLAEMCKRGVPFDGVTVNTLLAGLCRNGQVDAAAAL 157

Query: 216 WEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAM-MGKLYINRTSEGRLRS 274
            +     ++L +      +  + R+ D  +A      M A  + M  +  N    G  R+
Sbjct: 158 ADRGGGIHALDVIGWNTLIAGYCRVGDTPAALSVADRMTAQGLPMDVVGYNTLVAGFCRA 217

Query: 275 SRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGF 334
            ++D                                 A  ++  M+  G+ P+  TY  F
Sbjct: 218 GQVDA--------------------------------ARGVLDMMKEAGVDPNVATYTPF 245

Query: 335 IRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTN 394
           I      +G+    ++ + M +N +     T++ L     +      A AL  ++ +   
Sbjct: 246 IVYYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAYALFREMDKVGA 305

Query: 395 PKPFSAFLAACDTMDKPERAIKIFAKMRQKLRP----DIRTYELLFSLFGNVNAPYEEGN 450
                 +    D++ K  R  ++ + + + +      D+ TY  L    G      ++G 
Sbjct: 306 APNHVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDWLG------KQGK 359

Query: 451 MFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP 510
              +V    R  A+  +++ N + ++ + +  L KA   +   + L++    S +P    
Sbjct: 360 T-DEVKDTLRF-ALSDNLSPNGVTYT-VLIDALCKAHNVDEAEQVLLEMEEKSISP-NVV 415

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID------------------ 552
           T+++V++  V+     +A E  + MK  GI PN  TY  +ID                  
Sbjct: 416 TFSSVINGFVKRGLLDKATEYKRMMKERGINPNVVTYGTLIDGFFKFQGQDAALEVYHDM 475

Query: 553 CCSIIRCFK-SASALVSMMVRDGFYPQTMT----------------YTALIKILLDYGDF 595
            C  ++  K    +LV+ + ++G   + M                 YT LI  L   GD 
Sbjct: 476 LCEGVKVNKFIVDSLVNGLRQNGKIEEAMALFKDASGSGLSLDHVNYTTLIDGLFKAGDM 535

Query: 596 DEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFV 655
             A      +    +  D ++YN  +   C  G+    +  + +M    ++PD ST + +
Sbjct: 536 PTAFKFGQELMDRNMLPDAVVYNVFINCLCMLGKFKEAKSFLTEMRNMGLKPDQSTYNTM 595

Query: 656 FSGYVNCGFHNSAMEALQVLSM 677
              +   G    A++ L  + M
Sbjct: 596 IVSHCRKGETAKALKLLHEMKM 617



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 117/607 (19%), Positives = 228/607 (37%), Gaps = 81/607 (13%)

Query: 110 WRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERY--GIYPILPVYNSFLGA 167
           +R M++     N+  Y  ++ +L K G  +E   L+  LGE    G+   L  Y + +  
Sbjct: 297 FREMDKVGAAPNHVTYCTLIDSLAKAGRGKE---LLSLLGEMVSRGVVMDLVTYTALMDW 353

Query: 168 CAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIW-EDYIKHYSLS 226
             K          L    S  +  N VTYT L+       N+    ++  E   K  S +
Sbjct: 354 LGKQGKTDEVKDTLRFALSDNLSPNGVTYTVLIDALCKAHNVDEAEQVLLEMEEKSISPN 413

Query: 227 IFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNAL 286
           + +    +  F +   L  A E  +      MM +  IN                     
Sbjct: 414 VVTFSSVINGFVKRGLLDKATEYKR------MMKERGINPNV------------------ 449

Query: 287 PVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRN 346
                   ++  +I    + Q    A ++   M   G++ +    D  +  +  +  +  
Sbjct: 450 -------VTYGTLIDGFFKFQGQDAALEVYHDMLCEGVKVNKFIVDSLVNGLRQNGKIEE 502

Query: 347 GMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLA----EALLDQISRCTNPKPFSAFL 402
            M + K    + L        TL     KA ++  A    + L+D+ +   +   ++ F+
Sbjct: 503 AMALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDR-NMLPDAVVYNVFI 561

Query: 403 AACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI 461
                + K + A     +MR   L+PD  TY  +               + S     +  
Sbjct: 562 NCLCMLGKFKEAKSFLTEMRNMGLKPDQSTYNTM---------------IVSHCRKGETA 606

Query: 462 NAIEM--DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLG-TP---TYNTV 515
            A+++  +M  ++I+ + I+   L+  L   G + E  +Y  +     G +P   T+  V
Sbjct: 607 KALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAV-EKAKYLLNEMVSAGFSPSSLTHRRV 665

Query: 516 LHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGF 575
           L +  +++     ++I + M   G+  +   YN ++         + A+ ++  M+  G 
Sbjct: 666 LQACSQSRRLDVILDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRKATVVLEEMLGSGI 725

Query: 576 YPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEF 635
            P T+T+ ALI         D A      +  + I  ++  +NT+L      GRI     
Sbjct: 726 APDTITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTLLGGLESVGRIGEAGT 785

Query: 636 IIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCE--------EVSTL 687
           ++ +M ++ ++P+  T   + +G+   G  ++ +EA     MR+ CE        +VST 
Sbjct: 786 VLIEMEKSGLEPNNLTYDILATGH---GKQSNKVEA-----MRLYCEMVGKGFVPKVSTY 837

Query: 688 EEKRSDF 694
               SDF
Sbjct: 838 NALISDF 844


>gi|147841262|emb|CAN75614.1| hypothetical protein VITISV_022293 [Vitis vinifera]
          Length = 590

 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 85/161 (52%), Gaps = 2/161 (1%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TYNT++    +    + A+ I  +M+  G+ P+  TYN +I      R  +   AL    
Sbjct: 234 TYNTLISLYCKKGMHYEALGIQDRMERGGVSPDIVTYNSLI--YGFCREGRMREALRLFR 291

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
             +G  P  +TYT LI       D +EAL L +++ +EG+   V+ YN+IL+K CE+G+I
Sbjct: 292 EINGATPNHVTYTTLIDGYCRVNDLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKI 351

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEA 671
                ++ +M + KV+PD  TC+ + + Y   G   SAM+ 
Sbjct: 352 KDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKV 392



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 86/396 (21%), Positives = 163/396 (41%), Gaps = 27/396 (6%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A Q+   M+  G +P  H     + ++   R      +V K M +  + P       L  
Sbjct: 146 AIQVFEHMRVHGFKPHLHACTVLLNSLAKARLTNMVWKVYKKMVRVGVVPNIHIFNVLIH 205

Query: 372 ECSKALELDLAEALLDQI-SRCTNPKPFS--AFLAACDTMDKPERAIKIFAKM-RQKLRP 427
            C K+ +++ AE LL+++ SR   P  F+    ++          A+ I  +M R  + P
Sbjct: 206 ACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEALGIQDRMERGGVSP 265

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAK--------------RINAIEMD------ 467
           DI TY  L   F       E   +F +++ A               R+N +E        
Sbjct: 266 DIVTYNSLIYGFCREGRMREALRLFREINGATPNHVTYTTLIDGYCRVNDLEEALRLREV 325

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQE 524
           M    +    ++  ++L+ L  EG I++   L+    + K      T NT++++  +  +
Sbjct: 326 MEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGD 385

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
              AM++ K+M   G+ P+  T+  +I     +    SA   +  M+  GF P   TY+ 
Sbjct: 386 MGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSPSYSTYSW 445

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
           L+    D  + +  + L D +S +G+  D+ +Y  ++++ C+  +I+  E I   M    
Sbjct: 446 LVDSYYDQDNKEAVIRLPDELSRKGLFVDISVYRALIRRLCKIDKIESAERIFTLMQGKG 505

Query: 645 VQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRML 680
           ++ D      +   Y   G   +A + L  +  R L
Sbjct: 506 MKGDSVVYTSLAYAYFKAGKAIAASDMLDEMDKRRL 541



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 82/184 (44%), Gaps = 16/184 (8%)

Query: 514 TVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRD 573
            +L+SL +A+ ++   +++K+M   G+ PN   +N++I  C      + A  L++ M   
Sbjct: 167 VLLNSLAKARLTNMVWKVYKKMVRVGVVPNIHIFNVLIHACCKSGDVEKAEQLLNEMESR 226

Query: 574 GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVI 633
             +P   TY  LI +    G   EAL + D +   G+  D++ YN+++   C +GR+   
Sbjct: 227 FIFPDLFTYNTLISLYCKKGMHYEALGIQDRMERGGVSPDIVTYNSLIYGFCREGRMREA 286

Query: 634 EFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS--------------MRM 679
             +  ++  N   P+  T   +  GY        A+   +V+               +R 
Sbjct: 287 LRLFREI--NGATPNHVTYTTLIDGYCRVNDLEEALRLREVMEVEGLHPGVVTYNSILRK 344

Query: 680 LCEE 683
           LCEE
Sbjct: 345 LCEE 348



 Score = 45.1 bits (105), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 81/383 (21%), Positives = 156/383 (40%), Gaps = 26/383 (6%)

Query: 93  ILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERY 152
           +LN  A++     V + ++ M    +  N   + +++ A CK G +E+A  L+  +  R+
Sbjct: 168 LLNSLAKARLTNMVWKVYKKMVRVGVVPNIHIFNVLIHACCKSGDVEKAEQLLNEMESRF 227

Query: 153 GIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAV 212
            I+P L  YN+ +    K      A    D M+   V  + VTY  L+     +  +   
Sbjct: 228 -IFPDLFTYNTLISLYCKKGMHYEALGIQDRMERGGVSPDIVTYNSLIYGFCREGRMREA 286

Query: 213 HEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMM-GKLYINRT---- 267
             ++ + I   + +  +    +  + R+ DL+ A    + M    +  G +  N      
Sbjct: 287 LRLFRE-INGATPNHVTYTTLIDGYCRVNDLEEALRLREVMEVEGLHPGVVTYNSILRKL 345

Query: 268 -SEGRLR-SSRLDIPIPLNALPVMKVL--RWSFSDVIHACGRTQNSGLAEQLMLQMQSLG 323
             EG+++ ++RL     LN +   KV     + + +I+A  +  + G A ++  +M   G
Sbjct: 346 CEEGKIKDANRL-----LNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAG 400

Query: 324 LQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAE 383
           L+P   T+   I        + +  E L  M      P  ST + L        + D  E
Sbjct: 401 LKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSPSYSTYSWL---VDSYYDQDNKE 457

Query: 384 ALL---DQISR---CTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLF 436
           A++   D++SR     +   + A +     +DK E A +IF  M+ K ++ D   Y  L 
Sbjct: 458 AVIRLPDELSRKGLFVDISVYRALIRRLCKIDKIESAERIFTLMQGKGMKGDSVVYTSLA 517

Query: 437 SLFGNVNAPYEEGNMFSQVDSAK 459
             +          +M  ++D  +
Sbjct: 518 YAYFKAGKAIAASDMLDEMDKRR 540


>gi|222623943|gb|EEE58075.1| hypothetical protein OsJ_08937 [Oryza sativa Japonica Group]
          Length = 933

 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 115/547 (21%), Positives = 210/547 (38%), Gaps = 62/547 (11%)

Query: 161 YNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI 220
           YN+ +    +   +  A   LD+M    V  N  TYT  +      K +    +++E  +
Sbjct: 207 YNTLVAGFCRAGQVDAARGVLDMMKEAGVDPNVATYTPFIVYYCRTKGVEEAFDLYEGMV 266

Query: 221 KH-YSLSIFSLRKFVWSFTRLRDLKSAYETLQHM------------------VALAMMGK 261
           ++   L + +L   V    R      AY   + M                  +A A  GK
Sbjct: 267 RNGVLLDVVTLSALVAGLCRDGRFSEAYALFREMDKVGAAPNHVTYCTLIDSLAKAGRGK 326

Query: 262 LYINRTSEGRLRSSRLDIPIPLNAL-----------PVMKVLRWSFSD-----------V 299
             ++   E   R   +D+ +   AL            V   LR++ SD           +
Sbjct: 327 ELLSLLGEMVSRGVVMDL-VTYTALMDWLGKQGKTDEVKDTLRFALSDNLSPNGVTYTVL 385

Query: 300 IHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNL 359
           I A  +  N   AEQ++L+M+   + P+  T+   I   V    L    E  ++M++  +
Sbjct: 386 IDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKATEYKRMMKERGI 445

Query: 360 KPQDSTIATLSVECSKALELDLA-EALLDQISRCTNPKPF--SAFLAACDTMDKPERAIK 416
            P   T  TL     K    D A E   D +        F   + +       K E A+ 
Sbjct: 446 NPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCEGVKVNKFIVDSLVNGLRQNGKIEEAMA 505

Query: 417 IFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQH 475
           +F       L  D   Y  L      ++  ++ G+M +     + +      M RN +  
Sbjct: 506 LFKDASGSGLSLDHVNYTTL------IDGLFKAGDMPTAFKFGQEL------MDRNMLPD 553

Query: 476 SHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIF 532
           + +     +  L   G  +E   +  + +     P   TYNT++ S     E+ +A+++ 
Sbjct: 554 A-VVYNVFINCLCMLGKFKEAKSFLTEMRNMGLKPDQSTYNTMIVSHCRKGETAKALKLL 612

Query: 533 KQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDY 592
            +MK   I PN  TYN ++         + A  L++ MV  GF P ++T+  +++     
Sbjct: 613 HEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSSLTHRRVLQACSQS 672

Query: 593 GDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTC 652
              D  L++ + +   G+  D+ +YNT+L+  C  G       ++E+M  + + PD  T 
Sbjct: 673 RRLDVILDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRKATVVLEEMLGSGIAPDTITF 732

Query: 653 HFVFSGY 659
           + +  G+
Sbjct: 733 NALILGH 739



 Score = 65.1 bits (157), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 116/590 (19%), Positives = 223/590 (37%), Gaps = 42/590 (7%)

Query: 106 VMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFL 165
           V +T R      +  N   Y +++ ALCK   ++EA  ++  + E+  I P +  ++S +
Sbjct: 363 VKDTLRFALSDNLSPNGVTYTVLIDALCKAHNVDEAEQVLLEMEEK-SISPNVVTFSSVI 421

Query: 166 GACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYS 224
               K   +  A     +M  R +  N VTY  L+      +   A  E++ D + +   
Sbjct: 422 NGFVKRGLLDKATEYKRMMKERGINPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCEGVK 481

Query: 225 LSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTS--EGRLRSSRLDIPIP 282
           ++ F +   V    +   ++ A    +     + +   ++N T+  +G  ++   D+P  
Sbjct: 482 VNKFIVDSLVNGLRQNGKIEEAMALFKDASG-SGLSLDHVNYTTLIDGLFKAG--DMPTA 538

Query: 283 L---------NALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDG 333
                     N LP   V+   F + +   G+ +    A+  + +M+++GL+P   TY+ 
Sbjct: 539 FKFGQELMDRNMLPD-AVVYNVFINCLCMLGKFKE---AKSFLTEMRNMGLKPDQSTYNT 594

Query: 334 FIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRC 392
            I +          +++L  M+ +++KP   T  TL         ++ A+ LL++ +S  
Sbjct: 595 MIVSHCRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAG 654

Query: 393 TNPKPFS--AFLAACDTMDKPERAIKIFA-KMRQKLRPDIRTYELLFSLFGNVNAPYEEG 449
            +P   +    L AC    + +  + I    M   L  DI  Y  L              
Sbjct: 655 FSPSSLTHRRVLQACSQSRRLDVILDIHEWMMNAGLHADITVYNTLL------------- 701

Query: 450 NMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLL----KALGAEGMIRELIQYFCDSKT 505
            +       ++   +  +M  + I    I+   L+    K+   +       Q    + +
Sbjct: 702 QVLCYHGMTRKATVVLEEMLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQNIS 761

Query: 506 PLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASA 565
           P    T+NT+L  L        A  +  +M+  G+ PN  TY+I+            A  
Sbjct: 762 P-NIATFNTLLGGLESVGRIGEAGTVLIEMEKSGLEPNNLTYDILATGHGKQSNKVEAMR 820

Query: 566 LVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKAC 625
           L   MV  GF P+  TY ALI      G   +A  L   +   G+      Y+ ++    
Sbjct: 821 LYCEMVGKGFVPKVSTYNALISDFTKAGMMTQAKELFKDMQKRGVHPTSCTYDILVSGWS 880

Query: 626 EKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
                  ++  ++ M +    P   T  F+   +   G    A   L+ L
Sbjct: 881 RIRNGTEVKKCLKDMKEKGFSPSKGTLSFICRAFSKPGMTWQAQRLLKNL 930



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 84/197 (42%), Gaps = 8/197 (4%)

Query: 490 EGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNI 549
           EGM+R  +         L   T + ++  L        A  +F++M   G  PN  TY  
Sbjct: 263 EGMVRNGVL--------LDVVTLSALVAGLCRDGRFSEAYALFREMDKVGAAPNHVTYCT 314

Query: 550 MIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEG 609
           +ID  +     K   +L+  MV  G     +TYTAL+  L   G  DE  + L     + 
Sbjct: 315 LIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDEVKDTLRFALSDN 374

Query: 610 IPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAM 669
           +  + + Y  ++   C+   +D  E ++ +M +  + P+  T   V +G+V  G  + A 
Sbjct: 375 LSPNGVTYTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKAT 434

Query: 670 EALQVLSMRMLCEEVST 686
           E  +++  R +   V T
Sbjct: 435 EYKRMMKERGINPNVVT 451



 Score = 57.0 bits (136), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/220 (21%), Positives = 90/220 (40%), Gaps = 7/220 (3%)

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQE 524
           M RN +    +++  L+  L  +G   E    F +       P   TY T++ SL +A  
Sbjct: 265 MVRNGVLLDVVTLSALVAGLCRDGRFSEAYALFREMDKVGAAPNHVTYCTLIDSLAKAGR 324

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
               + +  +M + G+  +  TY  ++D              +   + D   P  +TYT 
Sbjct: 325 GKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDEVKDTLRFALSDNLSPNGVTYTV 384

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
           LI  L    + DEA  +L  +  + I  +V+ +++++    ++G +D        M +  
Sbjct: 385 LIDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKATEYKRMMKERG 444

Query: 645 VQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEV 684
           + P+  T   +  G+      ++A+E        MLCE V
Sbjct: 445 INPNVVTYGTLIDGFFKFQGQDAALEVYH----DMLCEGV 480



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 71/145 (48%), Gaps = 8/145 (5%)

Query: 509 TPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVS 568
           T  YN +L +L  +  +H A  +  +M   G+P +  T N ++    + R  +  +A   
Sbjct: 103 TVAYNILLAAL--SDHAH-APAVLAEMCKRGVPFDGVTVNTLL--AGLCRNGQVDAAAAL 157

Query: 569 MMVRDGFYPQTMTYTALIKIL--LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE 626
                G  P  M+    + +L    +GD   AL++ D ++ +G+P DV+ YNT++   C 
Sbjct: 158 ADRAGGITPW-MSSAGTLSLLDIAGFGDTPAALSVADRMTAQGLPMDVVGYNTLVAGFCR 216

Query: 627 KGRIDVIEFIIEQMHQNKVQPDPST 651
            G++D    +++ M +  V P+ +T
Sbjct: 217 AGQVDAARGVLDMMKEAGVDPNVAT 241



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 78/405 (19%), Positives = 157/405 (38%), Gaps = 49/405 (12%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A  ++  M+  G+ P+  TY  FI      +G+    ++ + M +N +     T++ L  
Sbjct: 223 ARGVLDMMKEAGVDPNVATYTPFIVYYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSALVA 282

Query: 372 ECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRP---- 427
              +      A AL  ++ +         +    D++ K  R  ++ + + + +      
Sbjct: 283 GLCRDGRFSEAYALFREMDKVGAAPNHVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVM 342

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL 487
           D+ TY  L    G      ++G    +V    R  A+  +++ N + ++ + +  L KA 
Sbjct: 343 DLVTYTALMDWLG------KQGKT-DEVKDTLRF-ALSDNLSPNGVTYT-VLIDALCKAH 393

Query: 488 GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATY 547
             +   + L++    S +P    T+++V++  V+     +A E  + MK  GI PN  TY
Sbjct: 394 NVDEAEQVLLEMEEKSISP-NVVTFSSVINGFVKRGLLDKATEYKRMMKERGINPNVVTY 452

Query: 548 NIMID------------------CCSIIRCFK-SASALVSMMVRDGFYPQTMT------- 581
             +ID                   C  ++  K    +LV+ + ++G   + M        
Sbjct: 453 GTLIDGFFKFQGQDAALEVYHDMLCEGVKVNKFIVDSLVNGLRQNGKIEEAMALFKDASG 512

Query: 582 ---------YTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDV 632
                    YT LI  L   GD   A      +    +  D ++YN  +   C  G+   
Sbjct: 513 SGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLPDAVVYNVFINCLCMLGKFKE 572

Query: 633 IEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSM 677
            +  + +M    ++PD ST + +   +   G    A++ L  + M
Sbjct: 573 AKSFLTEMRNMGLKPDQSTYNTMIVSHCRKGETAKALKLLHEMKM 617



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 117/607 (19%), Positives = 228/607 (37%), Gaps = 81/607 (13%)

Query: 110 WRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERY--GIYPILPVYNSFLGA 167
           +R M++     N+  Y  ++ +L K G  +E   L+  LGE    G+   L  Y + +  
Sbjct: 297 FREMDKVGAAPNHVTYCTLIDSLAKAGRGKE---LLSLLGEMVSRGVVMDLVTYTALMDW 353

Query: 168 CAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIW-EDYIKHYSLS 226
             K          L    S  +  N VTYT L+       N+    ++  E   K  S +
Sbjct: 354 LGKQGKTDEVKDTLRFALSDNLSPNGVTYTVLIDALCKAHNVDEAEQVLLEMEEKSISPN 413

Query: 227 IFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNAL 286
           + +    +  F +   L  A E  +      MM +  IN                     
Sbjct: 414 VVTFSSVINGFVKRGLLDKATEYKR------MMKERGINPNV------------------ 449

Query: 287 PVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRN 346
                   ++  +I    + Q    A ++   M   G++ +    D  +  +  +  +  
Sbjct: 450 -------VTYGTLIDGFFKFQGQDAALEVYHDMLCEGVKVNKFIVDSLVNGLRQNGKIEE 502

Query: 347 GMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLA----EALLDQISRCTNPKPFSAFL 402
            M + K    + L        TL     KA ++  A    + L+D+ +   +   ++ F+
Sbjct: 503 AMALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDR-NMLPDAVVYNVFI 561

Query: 403 AACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI 461
                + K + A     +MR   L+PD  TY  +               + S     +  
Sbjct: 562 NCLCMLGKFKEAKSFLTEMRNMGLKPDQSTYNTM---------------IVSHCRKGETA 606

Query: 462 NAIEM--DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLG-TP---TYNTV 515
            A+++  +M  ++I+ + I+   L+  L   G + E  +Y  +     G +P   T+  V
Sbjct: 607 KALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAV-EKAKYLLNEMVSAGFSPSSLTHRRV 665

Query: 516 LHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGF 575
           L +  +++     ++I + M   G+  +   YN ++         + A+ ++  M+  G 
Sbjct: 666 LQACSQSRRLDVILDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRKATVVLEEMLGSGI 725

Query: 576 YPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEF 635
            P T+T+ ALI         D A      +  + I  ++  +NT+L      GRI     
Sbjct: 726 APDTITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTLLGGLESVGRIGEAGT 785

Query: 636 IIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCE--------EVSTL 687
           ++ +M ++ ++P+  T   + +G+   G  ++ +EA     MR+ CE        +VST 
Sbjct: 786 VLIEMEKSGLEPNNLTYDILATGH---GKQSNKVEA-----MRLYCEMVGKGFVPKVSTY 837

Query: 688 EEKRSDF 694
               SDF
Sbjct: 838 NALISDF 844



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 60/143 (41%)

Query: 506 PLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASA 565
           P+    YNT++     A +   A  +   MK  G+ PN ATY   I      +  + A  
Sbjct: 201 PMDVVGYNTLVAGFCRAGQVDAARGVLDMMKEAGVDPNVATYTPFIVYYCRTKGVEEAFD 260

Query: 566 LVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKAC 625
           L   MVR+G     +T +AL+  L   G F EA  L   +   G   + + Y T++    
Sbjct: 261 LYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAYALFREMDKVGAAPNHVTYCTLIDSLA 320

Query: 626 EKGRIDVIEFIIEQMHQNKVQPD 648
           + GR   +  ++ +M    V  D
Sbjct: 321 KAGRGKELLSLLGEMVSRGVVMD 343



 Score = 45.1 bits (105), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 36/191 (18%), Positives = 72/191 (37%), Gaps = 2/191 (1%)

Query: 463 AIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSK--TPLGTPTYNTVLHSLV 520
           A+  +M +  +    +++  LL  L   G +         +   TP  +      L  + 
Sbjct: 121 AVLAEMCKRGVPFDGVTVNTLLAGLCRNGQVDAAAALADRAGGITPWMSSAGTLSLLDIA 180

Query: 521 EAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTM 580
              ++  A+ +  +M   G+P +   YN ++          +A  ++ MM   G  P   
Sbjct: 181 GFGDTPAALSVADRMTAQGLPMDVVGYNTLVAGFCRAGQVDAARGVLDMMKEAGVDPNVA 240

Query: 581 TYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQM 640
           TYT  I         +EA +L + +   G+  DV+  + ++   C  GR      +  +M
Sbjct: 241 TYTPFIVYYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAYALFREM 300

Query: 641 HQNKVQPDPST 651
            +    P+  T
Sbjct: 301 DKVGAAPNHVT 311


>gi|356577532|ref|XP_003556878.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
           chloroplastic-like [Glycine max]
          Length = 932

 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 95/470 (20%), Positives = 176/470 (37%), Gaps = 78/470 (16%)

Query: 288 VMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNG 347
           + K  R  +  ++   GR  +   A Q    M++ G++PSSH Y   I A    R +   
Sbjct: 279 IKKPARKEYGLMVKYYGRRGDMHHARQTFESMRARGIEPSSHVYSSLIHAYAVGRDMEEA 338

Query: 348 MEVLKIMQQNNLKPQDSTIATLSV-------------------ECSKAL----------- 377
           +  ++ M++  +   + TI T S+                   E  + L           
Sbjct: 339 LHCVRKMKEEGI---EMTIVTYSIIVGGFAKMGNADAADHWFEEAKEKLPSLNAVIYGGI 395

Query: 378 --------ELDLAEALLDQISRCTNPKPFSAFLAACDT---MDKPERAIKIFAKMRQ-KL 425
                    +D AEAL+ ++       P   +    D    +   E+ + +F ++++   
Sbjct: 396 IYAHCQICNMDRAEALVREMEEQGIDAPIDIYHTMMDGYTMIGNEEKCLIVFDRLKECGF 455

Query: 426 RPDIRTYELLFSLF---GNVNAPYEEGNMFSQVDSAKRINAIEM---------------- 466
            P + +Y  L +L+   G V+   E   M         +    M                
Sbjct: 456 FPSVISYGCLINLYTKVGKVSKALEISKMMKMSGIKHNMKTYSMLINGFLKLKDWANAFS 515

Query: 467 ---DMARNNIQHSHISMKNLLKALGAEG-------MIRELIQYFCDSKTPLGTPTYNTVL 516
              D  ++ ++   +   N++ A    G       M+R++ +   +   P  T T+  ++
Sbjct: 516 VFEDFTKDGLKPDVVLYNNIITAFCGMGNMDRAICMVRQMQK---ERHRPT-TRTFLPII 571

Query: 517 HSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFY 576
           H    A E  RA+EIF  M+  G  P   TYN +I      R    A A++  M   G  
Sbjct: 572 HGFARAGEMRRALEIFDMMRRSGCIPTVHTYNALILGLVEKRQMTKAVAILDEMNVAGVG 631

Query: 577 PQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFI 636
           P   TYT L++     GD ++A     ++  EG+  DV  Y  +LK  C+ GR+     +
Sbjct: 632 PNEHTYTTLMQGYASLGDTEKAFQYFTVLRNEGLEIDVYTYEALLKSCCKSGRMQSALAV 691

Query: 637 IEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
            ++M    +  +    + +  G+   G    A + +Q +    L  ++ T
Sbjct: 692 TKEMSAKNIPRNTFVYNILIDGWARRGDVWEAADLMQQMRKEGLLPDIHT 741



 Score = 69.3 bits (168), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 110/566 (19%), Positives = 219/566 (38%), Gaps = 69/566 (12%)

Query: 93  ILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERY 152
           ++ Y  R  D     +T+  M  + I  ++  Y  ++ A   G  +EEA + +  + E  
Sbjct: 290 MVKYYGRRGDMHHARQTFESMRARGIEPSSHVYSSLIHAYAVGRDMEEALHCVRKMKEE- 348

Query: 153 GIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTY---------------T 197
           GI   +  Y+  +G  AK+ +   A+   +    ++   N V Y                
Sbjct: 349 GIEMTIVTYSIIVGGFAKMGNADAADHWFEEAKEKLPSLNAVIYGGIIYAHCQICNMDRA 408

Query: 198 ELLKLAVWQKNLSAVHEIWEDYIKHYSL---------------------SIFSLRKFVWS 236
           E L   + ++ + A  +I+   +  Y++                     S+ S    +  
Sbjct: 409 EALVREMEEQGIDAPIDIYHTMMDGYTMIGNEEKCLIVFDRLKECGFFPSVISYGCLINL 468

Query: 237 FTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWS- 295
           +T++  +  A E  + M     M  +  N  +   L +  L +    NA  V +      
Sbjct: 469 YTKVGKVSKALEISKMM----KMSGIKHNMKTYSMLINGFLKLKDWANAFSVFEDFTKDG 524

Query: 296 -------FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGM 348
                  ++++I A     N   A  ++ QMQ    +P++ T+   I        +R  +
Sbjct: 525 LKPDVVLYNNIITAFCGMGNMDRAICMVRQMQKERHRPTTRTFLPIIHGFARAGEMRRAL 584

Query: 349 EVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRC---TNPKPFSAFLAAC 405
           E+  +M+++   P   T   L +   +  ++  A A+LD+++      N   ++  +   
Sbjct: 585 EIFDMMRRSGCIPTVHTYNALILGLVEKRQMTKAVAILDEMNVAGVGPNEHTYTTLMQGY 644

Query: 406 DTMDKPERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAI 464
            ++   E+A + F  +R + L  D+ TYE L      + +  + G M S +       A+
Sbjct: 645 ASLGDTEKAFQYFTVLRNEGLEIDVYTYEAL------LKSCCKSGRMQSAL-------AV 691

Query: 465 EMDMARNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVE 521
             +M+  NI  +      L+      G + E   L+Q            TY + +++  +
Sbjct: 692 TKEMSAKNIPRNTFVYNILIDGWARRGDVWEAADLMQQMRKEGLLPDIHTYTSFINACCK 751

Query: 522 AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMT 581
           A +  +A EI ++M+  GI PN  TY  +I+  +     + A +    M   GF P    
Sbjct: 752 AGDMQKATEIIQEMEASGIKPNLKTYTTLINGWARASMPEKALSCFEEMKLAGFKPDKAV 811

Query: 582 YTALIKILLDYGDFDEALNLLDLVSL 607
           Y  L+  LL    F ++     L+S+
Sbjct: 812 YHCLVTSLLSRATFAQSYVYSGLLSV 837



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 114/547 (20%), Positives = 204/547 (37%), Gaps = 34/547 (6%)

Query: 123 KCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLD 182
           K Y LM++   + G +  A      +  R GI P   VY+S + A A    M  A  C+ 
Sbjct: 285 KEYGLMVKYYGRRGDMHHARQTFESMRAR-GIEPSSHVYSSLIHAYAVGRDMEEALHCVR 343

Query: 183 LMDSRMVGKNEVTYTELLKLAVWQKNLSAV-HEIWEDYIKHYSLSIFSLRKFVWSFTRLR 241
            M    +    VTY+ ++       N  A  H   E   K  SL+       +++  ++ 
Sbjct: 344 KMKEEGIEMTIVTYSIIVGGFAKMGNADAADHWFEEAKEKLPSLNAVIYGGIIYAHCQIC 403

Query: 242 DLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLR-------- 293
           ++  A   ++ M    +   + I  T    +      I      L V   L+        
Sbjct: 404 NMDRAEALVREMEEQGIDAPIDIYHT----MMDGYTMIGNEEKCLIVFDRLKECGFFPSV 459

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
            S+  +I+   +      A ++   M+  G++ +  TY   I   +  +   N   V + 
Sbjct: 460 ISYGCLINLYTKVGKVSKALEISKMMKMSGIKHNMKTYSMLINGFLKLKDWANAFSVFED 519

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKP-- 411
             ++ LKP       +         +D A  ++ Q+ +  +      FL       +   
Sbjct: 520 FTKDGLKPDVVLYNNIITAFCGMGNMDRAICMVRQMQKERHRPTTRTFLPIIHGFARAGE 579

Query: 412 -ERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
             RA++IF  MR+    P + TY  L  + G V    E+  M   V       AI  +M 
Sbjct: 580 MRRALEIFDMMRRSGCIPTVHTYNAL--ILGLV----EKRQMTKAV-------AILDEMN 626

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFC---DSKTPLGTPTYNTVLHSLVEAQESH 526
              +  +  +   L++   + G   +  QYF    +    +   TY  +L S  ++    
Sbjct: 627 VAGVGPNEHTYTTLMQGYASLGDTEKAFQYFTVLRNEGLEIDVYTYEALLKSCCKSGRMQ 686

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
            A+ + K+M    IP N   YNI+ID  +       A+ L+  M ++G  P   TYT+ I
Sbjct: 687 SALAVTKEMSAKNIPRNTFVYNILIDGWARRGDVWEAADLMQQMRKEGLLPDIHTYTSFI 746

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
                 GD  +A  ++  +   GI  ++  Y T++         +      E+M     +
Sbjct: 747 NACCKAGDMQKATEIIQEMEASGIKPNLKTYTTLINGWARASMPEKALSCFEEMKLAGFK 806

Query: 647 PDPSTCH 653
           PD +  H
Sbjct: 807 PDKAVYH 813



 Score = 63.5 bits (153), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 73/163 (44%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TYN ++  LVE ++  +A+ I  +M   G+ PN  TY  ++   + +   + A    +++
Sbjct: 601 TYNALILGLVEKRQMTKAVAILDEMNVAGVGPNEHTYTTLMQGYASLGDTEKAFQYFTVL 660

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
             +G      TY AL+K     G    AL +   +S + IP +  +YN ++     +G +
Sbjct: 661 RNEGLEIDVYTYEALLKSCCKSGRMQSALAVTKEMSAKNIPRNTFVYNILIDGWARRGDV 720

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
                +++QM +  + PD  T     +     G    A E +Q
Sbjct: 721 WEAADLMQQMRKEGLLPDIHTYTSFINACCKAGDMQKATEIIQ 763



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 68/365 (18%), Positives = 143/365 (39%), Gaps = 16/365 (4%)

Query: 318 QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKAL 377
           +++  G  PS  +Y   I        +   +E+ K+M+ + +K    T + L     K  
Sbjct: 449 RLKECGFFPSVISYGCLINLYTKVGKVSKALEISKMMKMSGIKHNMKTYSMLINGFLKLK 508

Query: 378 ELDLAEALLDQISRCTNPKP----FSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTY 432
           +   A ++ +  ++    KP    ++  + A   M   +RAI +  +M +++ RP  RT+
Sbjct: 509 DWANAFSVFEDFTK-DGLKPDVVLYNNIITAFCGMGNMDRAICMVRQMQKERHRPTTRTF 567

Query: 433 ELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGM 492
             +   F           +F   D  +R   I      N +    +  + + KA+     
Sbjct: 568 LPIIHGFARAGEMRRALEIF---DMMRRSGCIPTVHTYNALILGLVEKRQMTKAVA---- 620

Query: 493 IRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID 552
              ++     +       TY T++       ++ +A + F  ++  G+  +  TY  ++ 
Sbjct: 621 ---ILDEMNVAGVGPNEHTYTTLMQGYASLGDTEKAFQYFTVLRNEGLEIDVYTYEALLK 677

Query: 553 CCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPH 612
            C      +SA A+   M        T  Y  LI      GD  EA +L+  +  EG+  
Sbjct: 678 SCCKSGRMQSALAVTKEMSAKNIPRNTFVYNILIDGWARRGDVWEAADLMQQMRKEGLLP 737

Query: 613 DVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEAL 672
           D+  Y + +   C+ G +     II++M  + ++P+  T   + +G+        A+   
Sbjct: 738 DIHTYTSFINACCKAGDMQKATEIIQEMEASGIKPNLKTYTTLINGWARASMPEKALSCF 797

Query: 673 QVLSM 677
           + + +
Sbjct: 798 EEMKL 802


>gi|302766812|ref|XP_002966826.1| hypothetical protein SELMODRAFT_11024 [Selaginella moellendorffii]
 gi|300164817|gb|EFJ31425.1| hypothetical protein SELMODRAFT_11024 [Selaginella moellendorffii]
          Length = 484

 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 86/371 (23%), Positives = 148/371 (39%), Gaps = 44/371 (11%)

Query: 323 GLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLA 382
           G +PS   Y   I  +V+++ +    ++LK M++ +    DS                  
Sbjct: 46  GHRPSVECYTVAIAEVVAEKKMSEAQQLLKQMEEEDGLAPDSVC---------------- 89

Query: 383 EALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGN 441
                          F+  +       + E A+++  +MRQK  RP   TY  L   +G 
Sbjct: 90  ---------------FNTVINGWCNEGQMEEAMRVVQEMRQKNCRPTTSTYNTLIKGYGV 134

Query: 442 VNAPYEEGNMFSQVDSAKRINAIEMD----MARNNIQHSHISMKNLLKALGAEGMIRELI 497
                +   +   + +  R +    D    +AR N++    +M  LL A   EG + E  
Sbjct: 135 AGQAEQAQQLVLHLLNKTRNSPSSEDGLEPVARPNLR----TMNTLLNAWCREGRLEEAW 190

Query: 498 QYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCC 554
           +     K+    P   TYNT+  +   A       ++   MK   + PN  TY I+I C 
Sbjct: 191 RVVAMIKSAGMQPDAVTYNTLAKAYAAAGRVAELEDLIADMKNARLKPNLRTYAILISCY 250

Query: 555 SIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNL-LDLVSLEGIPHD 613
                 +    L+S +  +G +P  + +  L+K      D    L + LDL++  G+  D
Sbjct: 251 CQNGMPERGLQLLSRLKFEGLHPDVVAFNTLLKGYSQENDQQLKLEMVLDLMAANGVRPD 310

Query: 614 VLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           V  Y+TI+      G  D  + I+ +M Q++V+PD      +  GYV  G  + A   LQ
Sbjct: 311 VTTYSTIMNWWSSAGMADKAQTILLEMQQDRVKPDVRAFAILAKGYVRSGRTHEAESLLQ 370

Query: 674 VLSMRMLCEEV 684
            +S+  +   V
Sbjct: 371 DMSLHGVAPNV 381



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 85/382 (22%), Positives = 160/382 (41%), Gaps = 36/382 (9%)

Query: 312 AEQLMLQMQSL-GLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLS 370
           A+QL+ QM+   GL P S  ++  I    ++  +   M V++ M+Q N +P  ST  TL 
Sbjct: 70  AQQLLKQMEEEDGLAPDSVCFNTVINGWCNEGQMEEAMRVVQEMRQKNCRPTTSTYNTLI 129

Query: 371 VECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIR 430
                A + + A+ L+  +   T   P S            E  ++  A      RP++R
Sbjct: 130 KGYGVAGQAEQAQQLVLHLLNKTRNSPSS------------EDGLEPVA------RPNLR 171

Query: 431 TYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAE 490
           T   L       NA   EG    +++ A R+ A+   +    +Q   ++   L KA  A 
Sbjct: 172 TMNTLL------NAWCREG----RLEEAWRVVAM---IKSAGMQPDAVTYNTLAKAYAAA 218

Query: 491 GMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATY 547
           G + EL     D K     P   TY  ++    +     R +++  ++K  G+ P+   +
Sbjct: 219 GRVAELEDLIADMKNARLKPNLRTYAILISCYCQNGMPERGLQLLSRLKFEGLHPDVVAF 278

Query: 548 NIMIDCCSIIRCFKSASALV-SMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVS 606
           N ++   S     +    +V  +M  +G  P   TY+ ++      G  D+A  +L  + 
Sbjct: 279 NTLLKGYSQENDQQLKLEMVLDLMAANGVRPDVTTYSTIMNWWSSAGMADKAQTILLEMQ 338

Query: 607 LEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHN 666
            + +  DV  +  + K     GR    E +++ M  + V P+      + SG+ + G  +
Sbjct: 339 QDRVKPDVRAFAILAKGYVRSGRTHEAESLLQDMSLHGVAPNVVVYTTIISGWCSMGRMD 398

Query: 667 SAMEALQVLSMRMLCEEVSTLE 688
            A+  L+++  R     ++T++
Sbjct: 399 DALRVLELMLERGEAPNLNTVQ 420



 Score = 42.7 bits (99), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 57/318 (17%), Positives = 119/318 (37%), Gaps = 81/318 (25%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A +++  ++S G+QP + TY+   +A  +   +    +++  M+   LKP   T A L +
Sbjct: 189 AWRVVAMIKSAGMQPDAVTYNTLAKAYAAAGRVAELEDLIADMKNARLKPNLRTYAIL-I 247

Query: 372 ECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMR-QKLRPDIR 430
            C                  C N                PER +++ ++++ + L PD+ 
Sbjct: 248 SCY-----------------CQN--------------GMPERGLQLLSRLKFEGLHPDVV 276

Query: 431 TYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAE 490
            +  L   +   N                                  + ++ +L  + A 
Sbjct: 277 AFNTLLKGYSQEN-------------------------------DQQLKLEMVLDLMAAN 305

Query: 491 GMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIM 550
           G+  ++              TY+T+++    A  + +A  I  +M+   + P+   + I+
Sbjct: 306 GVRPDVT-------------TYSTIMNWWSSAGMADKAQTILLEMQQDRVKPDVRAFAIL 352

Query: 551 IDCCSIIRCFKS--ASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLE 608
                 +R  ++  A +L+  M   G  P  + YT +I      G  D+AL +L+L+   
Sbjct: 353 AK--GYVRSGRTHEAESLLQDMSLHGVAPNVVVYTTIISGWCSMGRMDDALRVLELMLER 410

Query: 609 GIPHDVLLYNTILKKACE 626
           G   ++    T++   CE
Sbjct: 411 GEAPNLNTVQTLVWGFCE 428


>gi|224092332|ref|XP_002309562.1| predicted protein [Populus trichocarpa]
 gi|222855538|gb|EEE93085.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 121/267 (45%), Gaps = 18/267 (6%)

Query: 398 FSAFLAACDTMDKPERAIKIFAKMRQ--KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQV 455
           F+  L+A   M +   A+   +K  +   L PDI T  +L   F ++       ++FS+ 
Sbjct: 97  FTKLLSAIVKMGQYYGAVISLSKQMELAGLSPDIYTLSILIDCFSHLQRVDLAFSVFSK- 155

Query: 456 DSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPT---Y 512
                       M +  +Q   ++   L+  L   G   + +++F D +     PT   Y
Sbjct: 156 ------------MIKLGLQPDAVTFNTLINGLCKVGKFAQAVEFFDDFEASGCQPTVYTY 203

Query: 513 NTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVR 572
            T+++ L +  E+  A  +FK+M+  G  PN  TYNI+ID     +    A  + S M  
Sbjct: 204 TTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILIDSLCKDKLVNEALDIFSYMKA 263

Query: 573 DGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDV 632
               P   TY +LI+ L ++  + EA  LL+ ++   I  ++  +N ++   C++G++  
Sbjct: 264 KRISPDIFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMPNIFTFNVLVDAICKEGKVSE 323

Query: 633 IEFIIEQMHQNKVQPDPSTCHFVFSGY 659
            + + + M +  V+PD  T   +  GY
Sbjct: 324 AQGVFKTMTEMGVEPDVVTYSSLMYGY 350



 Score = 86.3 bits (212), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 107/530 (20%), Positives = 205/530 (38%), Gaps = 44/530 (8%)

Query: 184 MDSRMVGKNEVTYTELLKLAV-WQKNLSAVHEIWEDYIKHYSLS-----------IFSLR 231
           +D  +   N + + E L   + + K LSA+ ++ + Y    SLS           I++L 
Sbjct: 75  IDDALASFNHMLHREPLPCIIQFTKLLSAIVKMGQYYGAVISLSKQMELAGLSPDIYTLS 134

Query: 232 KFVWSFTRLRDLKSAYETLQHMVALAMM-GKLYINRTSEGRLRSSRLDIPIPL------- 283
             +  F+ L+ +  A+     M+ L +    +  N    G  +  +    +         
Sbjct: 135 ILIDCFSHLQRVDLAFSVFSKMIKLGLQPDAVTFNTLINGLCKVGKFAQAVEFFDDFEAS 194

Query: 284 NALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRG 343
              P +    ++++ +I+   +   +  A  L  +M+  G QP+  TY+  I ++  D+ 
Sbjct: 195 GCQPTV----YTYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILIDSLCKDKL 250

Query: 344 LRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT---NPKPFSA 400
           +   +++   M+   + P   T  +L            A ALL++++      N   F+ 
Sbjct: 251 VNEALDIFSYMKAKRISPDIFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMPNIFTFNV 310

Query: 401 FLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAK 459
            + A     K   A  +F  M +  + PD+ TY  L          Y        V++ K
Sbjct: 311 LVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLM---------YGYSLRMEIVEARK 361

Query: 460 RINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVL 516
             +A    M     +    S   L+K       I E  Q F +      TP    YNT++
Sbjct: 362 LFDA----MITKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLI 417

Query: 517 HSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFY 576
           H L +      A ++FK M + G  P+  TY++++D          A  L  +M      
Sbjct: 418 HGLCQLGRLREAQDLFKNMHSNGNLPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYLK 477

Query: 577 PQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFI 636
           P    Y  LI  +  +G+  +A  L   + ++G+  +V +Y TI+   C++G +D     
Sbjct: 478 PDIAMYNILIDAMCKFGNLKDARKLFSELFVQGLLPNVQIYTTIINNLCKEGLLDEALEA 537

Query: 637 IEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
              M  +   PD  + + +  G++     + A + +  +  R    E  T
Sbjct: 538 FRNMEGDGCPPDEFSYNVIIRGFLQYKDESRAAQLIGEMRDRGFVAEAGT 587



 Score = 47.8 bits (112), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 96/508 (18%), Positives = 195/508 (38%), Gaps = 84/508 (16%)

Query: 44  MGLNEESISKATQMQIVDALCR-GERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPD 102
           +GL  ++++  T   +++ LC+ G+ ++A     +   +        +  I+N   +  +
Sbjct: 159 LGLQPDAVTFNT---LINGLCKVGKFAQAVEFFDDFEASGCQPTVYTYTTIINGLCKIGE 215

Query: 103 PLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYN 162
                  ++ MEE     N   Y +++ +LCK   + EA ++  ++  +  I P +  YN
Sbjct: 216 TTAAAGLFKKMEEAGCQPNVVTYNILIDSLCKDKLVNEALDIFSYMKAKR-ISPDIFTYN 274

Query: 163 SFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH 222
           S +           A+  L+ M S  +  N  T+  L+     +  +S    +++     
Sbjct: 275 SLIQGLCNFRRWKEASALLNEMTSLNIMPNIFTFNVLVDAICKEGKVSEAQGVFK----- 329

Query: 223 YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIP 282
            +++   +   V +          Y +L +  +L M          E R      D  I 
Sbjct: 330 -TMTEMGVEPDVVT----------YSSLMYGYSLRM-------EIVEAR---KLFDAMIT 368

Query: 283 LNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDR 342
               P      +S++ +I    + +    A+QL  +M   GL P +  Y+  I  +    
Sbjct: 369 KGCKPDA----FSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQLG 424

Query: 343 GLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFL 402
            LR   ++ K M  N   P                +L     LLD   +         +L
Sbjct: 425 RLREAQDLFKNMHSNGNLP----------------DLFTYSMLLDGFCK-------EGYL 461

Query: 403 AACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI 461
                     +A ++F  M+   L+PDI  Y +L      ++A  + GN+    D+ K  
Sbjct: 462 G---------KAFRLFRVMQSTYLKPDIAMYNIL------IDAMCKFGNL---KDARKLF 503

Query: 462 NAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHS 518
           + + +     N+Q     + NL K    EG++ E ++ F + +     P   +YN ++  
Sbjct: 504 SELFVQGLLPNVQIYTTIINNLCK----EGLLDEALEAFRNMEGDGCPPDEFSYNVIIRG 559

Query: 519 LVEAQESHRAMEIFKQMKTCGIPPNAAT 546
            ++ ++  RA ++  +M+  G    A T
Sbjct: 560 FLQYKDESRAAQLIGEMRDRGFVAEAGT 587


>gi|147841407|emb|CAN66681.1| hypothetical protein VITISV_005087 [Vitis vinifera]
          Length = 882

 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 120/530 (22%), Positives = 213/530 (40%), Gaps = 35/530 (6%)

Query: 108 ETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGA 167
           + ++++ E+ +  N   Y  ++   CK G + +   L+  + E++ I+P + VY+S +  
Sbjct: 213 DMFQVLLEESLVPNCVTYSALIDGHCKLGDVNKGELLLQEMEEKH-IFPNVIVYSSIVDG 271

Query: 168 CAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSL-- 225
             K   +  A   +  M  R +  N   Y  L+             +++++ +K   L  
Sbjct: 272 YTKKGLLNEAMDVMRKMVQRNILPNVFVYGTLIDGYFKADQRGIALDLFKE-MKSRGLEE 330

Query: 226 SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTS--EGRLRSSRLDIPIPL 283
           + F +  FV +  R   ++ A E  + M++  ++    +N TS  +G  ++ +       
Sbjct: 331 NNFVIDSFVNNLKRSGRMEEADELFKDMMSRGLLPD-RVNYTSMMDGFFKAGKES----- 384

Query: 284 NALPVMKVLRWSFSDVIHACGRTQNSGL-------AEQLMLQMQSLGLQPSSHTYDGFIR 336
           +A  + + +    S           +GL       +E     M+ LGL P S T++  I 
Sbjct: 385 DAFNIAQEMTEKSSGFDVVAYNVLINGLFKLGKYESESFHTGMRQLGLAPDSATFNTMIN 444

Query: 337 AIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALL-DQISRCTNP 395
           A   +  L N +++L  M+   LKP   T   L      A E++    LL D +    +P
Sbjct: 445 AYCKEGNLGNALKLLNEMKSYGLKPNSITCNILVQRLCAAGEIEKTMDLLNDMLVMGFHP 504

Query: 396 KPFSAFLAACDTMDKPERAIKIFAKMRQ----KLRPDIRTYELLFSLFGNVNAPYEEGNM 451
            P +   A  D   K  RA  I     Q     ++ D+ TY  L S F  +        +
Sbjct: 505 TP-TTHKAVLDASSKSRRADVILHXHDQLVGMGVKLDLSTYNTLISTFCRLGMIRRATLV 563

Query: 452 FSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPT 511
           F  +     +  I   +  N + H +    +L KA           Q   +  +P    T
Sbjct: 564 FKDMMGKGILADI---ITYNALIHGYCISSHLKKAFAVHS------QMLTEGVSP-NVET 613

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           YN +L  L  A+    A  +  QMK  G+ PNA TY+I++     I   K    L   M+
Sbjct: 614 YNILLGGLSAARLIKEAAGLVNQMKERGLVPNATTYDILVSGHGKIGNMKECVKLYCEMI 673

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTIL 621
             GF P+T TY  LI          +A  L+  + + GIP +   Y+ ++
Sbjct: 674 TKGFVPKTRTYNVLISCFAKGKKMSQAKELMQEMQVRGIPPNSSTYDILI 723



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/278 (21%), Positives = 129/278 (46%), Gaps = 21/278 (7%)

Query: 413 RAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471
           RA+++   M+ +   PDI TY  L + F  +      G++F+    AK++     +++  
Sbjct: 35  RAVELLEGMKTEGPAPDIVTYNTLMNGFCKI------GDLFT----AKKLMG---EISLV 81

Query: 472 NIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRA 528
           N++ + I+   L+ A      + + +  + +       P   TY  +++ L ++ +   A
Sbjct: 82  NLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGLCKSGKVEEA 141

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALV--SMMVRDGFYPQTMTYTALI 586
             +F++M+  G+ PN  +Y  +ID  S+ +    A A V    MV  G     + YTAL+
Sbjct: 142 KSVFREMEEVGVVPNRFSYATLID--SLFKEGNVAEAFVLQGRMVVRGIGFDVVVYTALM 199

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
             L   G  + A ++  ++  E +  + + Y+ ++   C+ G ++  E ++++M +  + 
Sbjct: 200 DGLFKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGDVNKGELLLQEMEEKHIF 259

Query: 647 PDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEV 684
           P+      +  GY   G  N AM+ ++ +  R +   V
Sbjct: 260 PNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQRNILPNV 297



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 115/557 (20%), Positives = 225/557 (40%), Gaps = 39/557 (7%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y  +M  LCK G +EEA ++   + E  G+ P    Y + + +  K  ++  A +    M
Sbjct: 125 YTCIMNGLCKSGKVEEAKSVFREM-EEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRM 183

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSL--SIFSLRKFVWSFTRLRD 242
             R +G + V YT L+   +++  ++   E     +   SL  +  +    +    +L D
Sbjct: 184 VVRGIGFDVVVYTALMD-GLFKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGD 242

Query: 243 LKSAYETLQ-----HMVALAMMGKLYINRTSEGRLRSSRLDIP---IPLNALPVMKVLRW 294
           +      LQ     H+    ++    ++  ++  L +  +D+    +  N LP +    +
Sbjct: 243 VNKGELLLQEMEEKHIFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQRNILPNV----F 298

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
            +  +I    +    G+A  L  +M+S GL+ ++   D F+  +     +    E+ K M
Sbjct: 299 VYGTLIDGYFKADQRGIALDLFKEMKSRGLEENNFVIDSFVNNLKRSGRMEEADELFKDM 358

Query: 355 QQNNLKPQDSTIATLSVECSKALE----LDLAEALLDQISRCTNPKPFSAFLAACDTMDK 410
               L P      ++     KA +     ++A+ + ++ S   +   ++  +     + K
Sbjct: 359 MSRGLLPDRVNYTSMMDGFFKAGKESDAFNIAQEMTEK-SSGFDVVAYNVLINGLFKLGK 417

Query: 411 PERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
            E        MRQ  L PD  T+  +      +NA  +EGN+    ++ K +N    +M 
Sbjct: 418 YESE-SFHTGMRQLGLAPDSATFNTM------INAYCKEGNLG---NALKLLN----EMK 463

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAM 529
              ++ + I+   L++ L A G I + +    D       PT  T    L  + +S RA 
Sbjct: 464 SYGLKPNSITCNILVQRLCAAGEIEKTMDLLNDMLVMGFHPTPTTHKAVLDASSKSRRAD 523

Query: 530 EIF---KQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
            I     Q+   G+  + +TYN +I     +   + A+ +   M+  G     +TY ALI
Sbjct: 524 VILHXHDQLVGMGVKLDLSTYNTLISTFCRLGMIRRATLVFKDMMGKGILADIITYNALI 583

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
                     +A  +   +  EG+  +V  YN +L        I     ++ QM +  + 
Sbjct: 584 HGYCISSHLKKAFAVHSQMLTEGVSPNVETYNILLGGLSAARLIKEAAGLVNQMKERGLV 643

Query: 647 PDPSTCHFVFSGYVNCG 663
           P+ +T   + SG+   G
Sbjct: 644 PNATTYDILVSGHGKIG 660



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 82/175 (46%), Gaps = 6/175 (3%)

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC-CSIIRCFKSASALVSMM 570
           +N ++       E  RA+E+ + MKT G  P+  TYN +++  C I   F +A  L+  +
Sbjct: 20  FNVLIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLF-TAKKLMGEI 78

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
                 P  +TYT LI         ++AL + D ++++ +  DV+ Y  I+   C+ G++
Sbjct: 79  SLVNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGLCKSGKV 138

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVS 685
           +  + +  +M +  V P+     F ++  ++  F    +    VL  RM+   + 
Sbjct: 139 EEAKSVFREMEEVGVVPN----RFSYATLIDSLFKEGNVAEAFVLQGRMVVRGIG 189



 Score = 53.1 bits (126), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 44/221 (19%), Positives = 89/221 (40%), Gaps = 7/221 (3%)

Query: 458 AKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNT 514
            + +N  +    R +++H ++    L+      G I   ++     KT    P   TYNT
Sbjct: 2   TRHLNTYQHPEIRRSVEHFNV----LIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNT 57

Query: 515 VLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDG 574
           +++   +  +   A ++  ++    + PN  TY  +ID     +C + A  +   M    
Sbjct: 58  LMNGFCKIGDLFTAKKLMGEISLVNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKS 117

Query: 575 FYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIE 634
             P  +TYT ++  L   G  +EA ++   +   G+  +   Y T++    ++G +    
Sbjct: 118 LVPDVVTYTCIMNGLCKSGKVEEAKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAF 177

Query: 635 FIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
            +  +M    +  D      +  G    G  N+A +  QVL
Sbjct: 178 VLQGRMVVRGIGFDVVVYTALMDGLFKAGMANNAEDMFQVL 218


>gi|115461420|ref|NP_001054310.1| Os04g0684500 [Oryza sativa Japonica Group]
 gi|113565881|dbj|BAF16224.1| Os04g0684500 [Oryza sativa Japonica Group]
          Length = 901

 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 115/248 (46%), Gaps = 12/248 (4%)

Query: 429 IRTYELLFSLFGNVNAPYEEGNMFSQVDSA-KRINAIEMDMARNNIQHSHISMKNLLKAL 487
           I TY +L S F  +N      N+F +  +    +N I      +NI H+H    N+ +A 
Sbjct: 334 IVTYSILISGFAKINDSQSADNLFKEAKTKLSSLNGI----IYSNIIHAHCQSGNMERA- 388

Query: 488 GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATY 547
             E ++RE+ +   D+   +    Y++++H     Q  ++ + +F+++K CG  P+  +Y
Sbjct: 389 --EELVREMEEDGIDAPIDV----YHSMMHGYTIIQNENKCLVVFERLKECGFKPSIISY 442

Query: 548 NIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSL 607
             +++    I     A ++   M   G      TY+ LI   +   DF  A  + + +  
Sbjct: 443 GCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAIFEEMLR 502

Query: 608 EGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNS 667
            G+  D  +YN +++  C+ G +D    I+E+M + ++QP       +  GY   G   S
Sbjct: 503 SGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVAGDMKS 562

Query: 668 AMEALQVL 675
           A++ L ++
Sbjct: 563 ALDTLDLM 570



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 88/425 (20%), Positives = 164/425 (38%), Gaps = 57/425 (13%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           +S++IHA  ++ N   AE+L+ +M+  G+      Y   +      +     + V + ++
Sbjct: 372 YSNIIHAHCQSGNMERAEELVREMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLK 431

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT---NPKPFSAFLAACDTMDKPE 412
           +   KP   +   L     K  ++  A ++  ++  C    N K +S  +     +    
Sbjct: 432 ECGFKPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFA 491

Query: 413 RAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471
            A  IF +M R  L+PD   Y LL   F  +      GNM        R   I   M + 
Sbjct: 492 NAFAIFEEMLRSGLQPDRAIYNLLIEAFCKM------GNM-------DRAICILEKMQKE 538

Query: 472 NIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPT---YNTVLHSLVEAQESHRA 528
            +Q S+ + + +++     G ++  +      +     PT   YN ++H LV   +  RA
Sbjct: 539 RMQPSNRAFRPIIEGYAVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRA 598

Query: 529 MEIFKQMKTCGIPPNAATYNIMID------------------------------------ 552
           + +  +M   GI PN  TY I++                                     
Sbjct: 599 VSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRA 658

Query: 553 CCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPH 612
           CC   R  +SA A+   M        T  Y  LI      GD  EA +L+  +  +G+P 
Sbjct: 659 CCKSGR-MQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPP 717

Query: 613 DVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEAL 672
           ++  Y + +   C+ G +   E +IE+M    ++P+  T   +  G+      + A++  
Sbjct: 718 NIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWARVSLPDRALKCF 777

Query: 673 QVLSM 677
           + + +
Sbjct: 778 EEMKL 782



 Score = 56.2 bits (134), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 10/142 (7%)

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
           + H A   F+ M+  GI PNA  +  ++   ++ R  + A + V  M  +G     +TY+
Sbjct: 279 DKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMRGALSCVEEMKSEGLELTIVTYS 338

Query: 584 ALIKILLDYGDFDEALNLL-----DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIE 638
            LI       D   A NL       L SL GI     +Y+ I+   C+ G ++  E ++ 
Sbjct: 339 ILISGFAKINDSQSADNLFKEAKTKLSSLNGI-----IYSNIIHAHCQSGNMERAEELVR 393

Query: 639 QMHQNKVQPDPSTCHFVFSGYV 660
           +M ++ +       H +  GY 
Sbjct: 394 EMEEDGIDAPIDVYHSMMHGYT 415


>gi|356532718|ref|XP_003534918.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 529

 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 94/380 (24%), Positives = 152/380 (40%), Gaps = 28/380 (7%)

Query: 318 QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKAL 377
           ++  LG QP + T +  ++ +     ++  +     +     +    +  TL     K  
Sbjct: 70  KILKLGYQPDTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDHVSYGTLLNGLCKIG 129

Query: 378 ELDLAEALLDQI-SRCTNPKPFSAFLAACDTMDKPE---RAIKIFAKMRQK-LRPDIRTY 432
           E   A  LL  I  R T P     +    D + K +    A  ++++M  + + PD  TY
Sbjct: 130 ETRCAVKLLRMIEDRSTRPN-VVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPDAITY 188

Query: 433 ELL---FSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGA 489
             L   F L G +         FS +D          +M   NI         L+ AL  
Sbjct: 189 TTLIYGFCLLGQLMGA------FSLLD----------EMILKNINPGVYIYNILINALCK 232

Query: 490 EGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAAT 546
           EG ++E   L+          G  TY+T++       E   A +IF  M   G+ PN  +
Sbjct: 233 EGNVKEAKNLLAVMTKEGIKPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQMGVNPNVYS 292

Query: 547 YNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVS 606
           YNIMI+     +    A  L+  M+     P T+TY +LI  L   G    ALNL++ + 
Sbjct: 293 YNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMH 352

Query: 607 LEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHN 666
             G P DV+ Y ++L   C+   +D    +  +M +  +QP   T   +  G    G   
Sbjct: 353 HRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLK 412

Query: 667 SAMEALQVLSMRMLCEEVST 686
           +A E  Q L ++  C +V T
Sbjct: 413 NAQELFQHLLVKGCCIDVWT 432



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 79/367 (21%), Positives = 147/367 (40%), Gaps = 16/367 (4%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           S+  +++   +   +  A +L+  ++    +P+   Y+  I  +  D+ +    ++   M
Sbjct: 117 SYGTLLNGLCKIGETRCAVKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEM 176

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPKPFSAFL---AACDTMDK 410
               + P   T  TL        +L  A +LLD+ I +  NP  +   +   A C   + 
Sbjct: 177 DARGIFPDAITYTTLIYGFCLLGQLMGAFSLLDEMILKNINPGVYIYNILINALCKEGNV 236

Query: 411 PERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
            E    +    ++ ++P + TY  L   +           +  +V +AK+I    + M  
Sbjct: 237 KEAKNLLAVMTKEGIKPGVVTYSTLMDGYC----------LVGEVQNAKQIFHAMVQMGV 286

Query: 471 N-NIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAM 529
           N N+   +I +  L K    +  +  L +    +  P  T TYN+++  L ++     A+
Sbjct: 287 NPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVP-DTVTYNSLIDGLCKSGRITSAL 345

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
            +  +M   G P +  TY  ++D     +    A+AL   M   G  P   TYTALI  L
Sbjct: 346 NLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGL 405

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649
              G    A  L   + ++G   DV  Y  ++   C++G  D    I  +M  N   P+ 
Sbjct: 406 CKGGRLKNAQELFQHLLVKGCCIDVWTYTVMISGLCKEGMFDEALAIKSKMEDNGCIPNA 465

Query: 650 STCHFVF 656
            T   + 
Sbjct: 466 VTFEIII 472



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 72/147 (48%)

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           +N +L SL + ++   A+ + KQM+  GI  N  T NI+I+C   +     + +++  ++
Sbjct: 13  FNKILGSLAKMKQYLTAISLSKQMEVKGIRANFVTLNILINCFCHLGQMAFSFSVLGKIL 72

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
           + G+ P T+T   L+K L   G+  ++L+  D V  +G   D + Y T+L   C+ G   
Sbjct: 73  KLGYQPDTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDHVSYGTLLNGLCKIGETR 132

Query: 632 VIEFIIEQMHQNKVQPDPSTCHFVFSG 658
               ++  +     +P+    + +  G
Sbjct: 133 CAVKLLRMIEDRSTRPNVVMYNTIIDG 159



 Score = 46.6 bits (109), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 68/354 (19%), Positives = 140/354 (39%), Gaps = 53/354 (14%)

Query: 44  MGLNEESISKATQMQIVDALC-RGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPD 102
           +G   ++I+  T M+    LC +GE  ++ H    +      +    +  +LN   +  +
Sbjct: 74  LGYQPDTITLNTLMK---GLCLKGEVKKSLHFHDKVVAQGFQMDHVSYGTLLNGLCKIGE 130

Query: 103 PLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEA-------------------SN 143
               ++  RM+E++    N   Y  ++  LCK   + EA                   + 
Sbjct: 131 TRCAVKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPDAITYTT 190

Query: 144 LIY---FLGERYG------------IYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRM 188
           LIY    LG+  G            I P + +YN  + A  K  ++  A   L +M    
Sbjct: 191 LIYGFCLLGQLMGAFSLLDEMILKNINPGVYIYNILINALCKEGNVKEAKNLLAVMTKEG 250

Query: 189 VGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK-HYSLSIFSLRKFVWSFTRLRDLKSAY 247
           +    VTY+ L+        +    +I+   ++   + +++S    +    + + +  A 
Sbjct: 251 IKPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAM 310

Query: 248 ETLQHMVALAMM-GKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLR--------WSFSD 298
             L+ M+   M+   +  N   +G  +S R+      +AL +M  +          +++ 
Sbjct: 311 NLLREMLHKNMVPDTVTYNSLIDGLCKSGRIT-----SALNLMNEMHHRGQPADVVTYTS 365

Query: 299 VIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
           ++ A  + QN   A  L ++M+  G+QP+ +TY   I  +     L+N  E+ +
Sbjct: 366 LLDALCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQ 419


>gi|449444190|ref|XP_004139858.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
 gi|449530677|ref|XP_004172320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 839

 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 76/377 (20%), Positives = 162/377 (42%), Gaps = 26/377 (6%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           +SFS ++   G+    GL   + ++M + G++P+  T++  I+ + +   ++    ++  
Sbjct: 168 YSFSTLLIQLGKFDMDGLGRDVYIEMLNSGIRPNLFTFNAMIKILCNKGKVQEAELIMGH 227

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR--C-TNPKPFSAFLAACDTMDK 410
           +      P   T  +L +   K   LDLA  + D++ +  C  N   +SA +    +  +
Sbjct: 228 IFHYGACPDTFTYTSLIIGHCKNGNLDLAFEMFDRMVKDGCDPNSVTYSALINGLCSEGR 287

Query: 411 PERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM--D 467
            E A+ +  +M  K + P +  Y +                + S  D+ +   A+++   
Sbjct: 288 LEEAMDMLEEMIDKGIEPTVHAYTI---------------PIVSLCDAGRSCEAVKLLGK 332

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRELIQYF----CDSKTPLGTPTYNTVLHSLVEAQ 523
           M +     +  +   L+  L  +G     I  +     D   P    TY+ +++ L    
Sbjct: 333 MKKRGCGPNVQTYTALISGLSRDGKFEVAIGVYHKMLADGLVPTAV-TYSALINQLYVEG 391

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
               A+ IF+ M +    PN  TYN++I     I   + A+A+   M++ G  P  +TY 
Sbjct: 392 RFETALTIFEWMLSHDSLPNTETYNVIIKGFCSIGYIQKATAIFDQMLKAGPSPNVITYN 451

Query: 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
            +I I    G  + A+ LL+++   G+  D   Y  ++      G+++    +  +M ++
Sbjct: 452 IIIHIYFKQGYMNNAMRLLEMMKGNGLKLDTWTYANLISGFSRGGKLEHAFSLFNEMVEH 511

Query: 644 KVQPDPSTCHFVFSGYV 660
            + P+  T + + +GY+
Sbjct: 512 GISPNVVTYNAIINGYL 528



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 100/212 (47%), Gaps = 5/212 (2%)

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQE 524
           M ++    + ++   L+  L +EG + E   +++   D         Y   + SL +A  
Sbjct: 263 MVKDGCDPNSVTYSALINGLCSEGRLEEAMDMLEEMIDKGIEPTVHAYTIPIVSLCDAGR 322

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
           S  A+++  +MK  G  PN  TY  +I   S    F+ A  +   M+ DG  P  +TY+A
Sbjct: 323 SCEAVKLLGKMKKRGCGPNVQTYTALISGLSRDGKFEVAIGVYHKMLADGLVPTAVTYSA 382

Query: 585 LIKILLDYGDFDEALNLLD-LVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
           LI  L   G F+ AL + + ++S + +P +   YN I+K  C  G I     I +QM + 
Sbjct: 383 LINQLYVEGRFETALTIFEWMLSHDSLP-NTETYNVIIKGFCSIGYIQKATAIFDQMLKA 441

Query: 644 KVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
              P+  T + +   Y   G+ N+AM  L+++
Sbjct: 442 GPSPNVITYNIIIHIYFKQGYMNNAMRLLEMM 473



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 86/379 (22%), Positives = 152/379 (40%), Gaps = 61/379 (16%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDST----IA 367
           A +L+ +M+  G  P+  TY   I  +  D      + V   M  + L P   T    I 
Sbjct: 326 AVKLLGKMKKRGCGPNVQTYTALISGLSRDGKFEVAIGVYHKMLADGLVPTAVTYSALIN 385

Query: 368 TLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLR 426
            L VE      L + E +L   S   N + ++  +    ++   ++A  IF +M +    
Sbjct: 386 QLYVEGRFETALTIFEWMLSHDS-LPNTETYNVIIKGFCSIGYIQKATAIFDQMLKAGPS 444

Query: 427 PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKA 486
           P++ TY ++  ++      +++G M    ++A R+  +EM M  N ++    +  NL+  
Sbjct: 445 PNVITYNIIIHIY------FKQGYM----NNAMRL--LEM-MKGNGLKLDTWTYANLISG 491

Query: 487 LGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPN 543
               G +      F +      +P   TYN +++  +   +   A+ +F +M   G  P+
Sbjct: 492 FSRGGKLEHAFSLFNEMVEHGISPNVVTYNAIINGYLTVAKVDDALALFWKMVESGNVPS 551

Query: 544 AATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL------------- 590
           + TYN+MI   S       A      MV+ G  P  +TYT+ I  L              
Sbjct: 552 SGTYNMMISGFSKTNRISEAENFCGKMVKQGLLPNVITYTSFIDGLCKNGRTSLAFKIFH 611

Query: 591 -----DY-----------------GDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
                DY                 G  ++A  LLD    +G   +V  Y T+++  C KG
Sbjct: 612 EMKKRDYFPNLCTYSSLIDGLCQEGQAEDAERLLD----DGCEPNVDTYTTLVRGLCGKG 667

Query: 629 RIDVIEFIIEQMHQNKVQP 647
           R    + ++E M +  +QP
Sbjct: 668 RCYEADQLVESMKKKGLQP 686



 Score = 76.6 bits (187), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 86/401 (21%), Positives = 151/401 (37%), Gaps = 43/401 (10%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           ++++ +I    +  N  LA ++  +M   G  P+S TY   I  + S+  L   M++L+ 
Sbjct: 238 FTYTSLIIGHCKNGNLDLAFEMFDRMVKDGCDPNSVTYSALINGLCSEGRLEEAMDMLEE 297

Query: 354 MQQNNLKP--QDSTIATLSVECSKALELDLAEALLDQISRCTNP--KPFSAFLAACDTMD 409
           M    ++P     TI  +S+ C      +  + L     R   P  + ++A ++      
Sbjct: 298 MIDKGIEPTVHAYTIPIVSL-CDAGRSCEAVKLLGKMKKRGCGPNVQTYTALISGLSRDG 356

Query: 410 KPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNM----------------- 451
           K E AI ++ KM    L P   TY  L      +N  Y EG                   
Sbjct: 357 KFEVAIGVYHKMLADGLVPTAVTYSAL------INQLYVEGRFETALTIFEWMLSHDSLP 410

Query: 452 -----------FSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRE---LI 497
                      F  +   ++  AI   M +     + I+   ++     +G +     L+
Sbjct: 411 NTETYNVIIKGFCSIGYIQKATAIFDQMLKAGPSPNVITYNIIIHIYFKQGYMNNAMRLL 470

Query: 498 QYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSII 557
           +    +   L T TY  ++       +   A  +F +M   GI PN  TYN +I+    +
Sbjct: 471 EMMKGNGLKLDTWTYANLISGFSRGGKLEHAFSLFNEMVEHGISPNVVTYNAIINGYLTV 530

Query: 558 RCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLY 617
                A AL   MV  G  P + TY  +I          EA N    +  +G+  +V+ Y
Sbjct: 531 AKVDDALALFWKMVESGNVPSSGTYNMMISGFSKTNRISEAENFCGKMVKQGLLPNVITY 590

Query: 618 NTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
            + +   C+ GR  +   I  +M +    P+  T   +  G
Sbjct: 591 TSFIDGLCKNGRTSLAFKIFHEMKKRDYFPNLCTYSSLIDG 631



 Score = 58.9 bits (141), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 80/178 (44%), Gaps = 6/178 (3%)

Query: 492 MIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNI-M 550
           M   +++  CD  +     TY+ +++ L        AM++ ++M   GI P    Y I +
Sbjct: 259 MFDRMVKDGCDPNSV----TYSALINGLCSEGRLEEAMDMLEEMIDKGIEPTVHAYTIPI 314

Query: 551 IDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGI 610
           +  C   R  + A  L+  M + G  P   TYTALI  L   G F+ A+ +   +  +G+
Sbjct: 315 VSLCDAGRSCE-AVKLLGKMKKRGCGPNVQTYTALISGLSRDGKFEVAIGVYHKMLADGL 373

Query: 611 PHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSA 668
               + Y+ ++ +   +GR +    I E M  +   P+  T + +  G+ + G+   A
Sbjct: 374 VPTAVTYSALINQLYVEGRFETALTIFEWMLSHDSLPNTETYNVIIKGFCSIGYIQKA 431



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 116/600 (19%), Positives = 239/600 (39%), Gaps = 76/600 (12%)

Query: 59  IVDALCRGERSRASHLLLNLGHAHHSLGADDFFH----ILNYCARSPDPLFVMETWRMME 114
           ++  LC   + + + L++  GH  H     D F     I+ +C ++ +     E +  M 
Sbjct: 208 MIKILCNKGKVQEAELIM--GHIFHYGACPDTFTYTSLIIGHC-KNGNLDLAFEMFDRMV 264

Query: 115 EKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSM 174
           +     N+  Y  ++  LC  G LEEA +++  + ++ GI P +  Y   + +       
Sbjct: 265 KDGCDPNSVTYSALINGLCSEGRLEEAMDMLEEMIDK-GIEPTVHAYTIPIVSLCDAGRS 323

Query: 175 VHANLCLDLMDSRMVGKNEVTYTE----LLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSL 230
             A   L  M  R  G N  TYT     L +   ++  +   H++  D +   +++  +L
Sbjct: 324 CEAVKLLGKMKKRGCGPNVQTYTALISGLSRDGKFEVAIGVYHKMLADGLVPTAVTYSAL 383

Query: 231 RKFVWSFTRLRDLKSAYE-TLQH----------MVALAMMGKLYINRTS---EGRLRSS- 275
              ++   R     + +E  L H          ++        YI + +   +  L++  
Sbjct: 384 INQLYVEGRFETALTIFEWMLSHDSLPNTETYNVIIKGFCSIGYIQKATAIFDQMLKAGP 443

Query: 276 -----RLDIPIPL--------NALPVMKVLR--------WSFSDVIHACGRTQNSGLAEQ 314
                  +I I +        NA+ ++++++        W+++++I    R      A  
Sbjct: 444 SPNVITYNIIIHIYFKQGYMNNAMRLLEMMKGNGLKLDTWTYANLISGFSRGGKLEHAFS 503

Query: 315 LMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECS 374
           L  +M   G+ P+  TY+  I   ++   + + + +   M ++   P   T   +    S
Sbjct: 504 LFNEMVEHGISPNVVTYNAIINGYLTVAKVDDALALFWKMVESGNVPSSGTYNMMISGFS 563

Query: 375 KALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIR 430
           K   +  AE    ++ +     N   +++F+       +   A KIF +M+++   P++ 
Sbjct: 564 KTNRISEAENFCGKMVKQGLLPNVITYTSFIDGLCKNGRTSLAFKIFHEMKKRDYFPNLC 623

Query: 431 TYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAE 490
           TY  L      ++   +EG    Q + A+R+     D    N+     +   L++ L  +
Sbjct: 624 TYSSL------IDGLCQEG----QAEDAERLLD---DGCEPNVD----TYTTLVRGLCGK 666

Query: 491 GMIRELIQYFCDSKTPLGTPT---YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATY 547
           G   E  Q     K     P+   Y  +L    +  E   A++IF  M T G  P  + Y
Sbjct: 667 GRCYEADQLVESMKKKGLQPSEEIYRALLVGQCKNLEVESALKIFDSMVTTGFQPCLSDY 726

Query: 548 NIMIDCCSIIRC--FKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLV 605
             +I  C++ +    + A  +   M++  +    + +T L+  LL  G+ D +L LL ++
Sbjct: 727 KALI--CALCKANFRQKAQCMFQTMLKKHWNSDEVVWTVLLDGLLKEGETDLSLELLHVM 784


>gi|449448914|ref|XP_004142210.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
 gi|449525343|ref|XP_004169677.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
          Length = 768

 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 86/392 (21%), Positives = 163/392 (41%), Gaps = 26/392 (6%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +F+ +I A  +      A  +M +M S GL P   T+   ++  +    L   + + + M
Sbjct: 205 TFNILIKALCKAHQVRPAILMMEEMPSYGLSPDETTFTTIMQGYIEGGNLDGALRIKEQM 264

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPKPFS--AFLAACDTMDKP 411
            +      D T+  L     K   +D A + + + +S    P  F+    +     +   
Sbjct: 265 VEYGCPCTDVTVNVLINGFCKQGRIDQALSFIQEAVSEGFRPDQFTYNTLVNGLCKIGHA 324

Query: 412 ERAIKIF-AKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDS------AKRINAI 464
           + A+++  A +   L PDI TY  L S    +    E   +  Q+ S      A   NAI
Sbjct: 325 KHAMEVVDAMLLGGLDPDIYTYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAI 384

Query: 465 EMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQE 524
              + + N       +  LL + G       ++   C         T+N+++  L  +  
Sbjct: 385 ISSLCKENRVDEATEIARLLTSKG-------ILPDVC---------TFNSLIQGLCLSSN 428

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
              AM++F++MK  G  P+  TYN++ID     R  + A  L+  M  +G     + Y  
Sbjct: 429 HKSAMDLFEEMKGKGCRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELNGCARNVVIYNT 488

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
           LI         +EA  + D + L+G+  D + YNT++   C+  R++    +++QM    
Sbjct: 489 LIDGFCKNKRIEEAEEIFDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEG 548

Query: 645 VQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
           ++PD  T + + + +   G    A + +Q ++
Sbjct: 549 LRPDKFTYNSLLTHFCKTGDIKKAADIVQTMT 580



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 74/341 (21%), Positives = 139/341 (40%), Gaps = 21/341 (6%)

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQ--ISRCTNPKP-FSAFLAACDTMDKP 411
           +Q N  P  S    +  +  KA   +    +L++  +S C   +  F  F+ +    +  
Sbjct: 89  KQPNFVPSSSVYEEILRKLGKAGSFEYMRRVLEEMKLSGCEFDRGIFLIFVESYGKFELY 148

Query: 412 ERAIKIFAKMRQ--KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
           +  + I   M    +++PD R Y +L              N+    +  K + +    M 
Sbjct: 149 DEVVGIVKVMEDEYRIKPDTRFYNVLL-------------NVLVDANKLKLVESAHSSMV 195

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESH 526
           R  I+H   +   L+KAL     +R  I    +  +   +P   T+ T++   +E     
Sbjct: 196 RRRIRHDVSTFNILIKALCKAHQVRPAILMMEEMPSYGLSPDETTFTTIMQGYIEGGNLD 255

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
            A+ I +QM   G P    T N++I+          A + +   V +GF P   TY  L+
Sbjct: 256 GALRIKEQMVEYGCPCTDVTVNVLINGFCKQGRIDQALSFIQEAVSEGFRPDQFTYNTLV 315

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
             L   G    A+ ++D + L G+  D+  YN+++   C+ G I+    I++QM      
Sbjct: 316 NGLCKIGHAKHAMEVVDAMLLGGLDPDIYTYNSLISGLCKLGEIEEAVKILDQMVSRDCS 375

Query: 647 PDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTL 687
           P+  T + + S        + A E  ++L+ + +  +V T 
Sbjct: 376 PNAVTYNAIISSLCKENRVDEATEIARLLTSKGILPDVCTF 416



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 103/544 (18%), Positives = 209/544 (38%), Gaps = 77/544 (14%)

Query: 111 RMMEEKEIG---LNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGA 167
           R++EE ++     +   +L+ +++  K    +E   ++  + + Y I P    YN  L  
Sbjct: 118 RVLEEMKLSGCEFDRGIFLIFVESYGKFELYDEVVGIVKVMEDEYRIKPDTRFYNVLLNV 177

Query: 168 CAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSI 227
               + +         M  R +  +  T+  L+K       L   H++    +    +  
Sbjct: 178 LVDANKLKLVESAHSSMVRRRIRHDVSTFNILIKA------LCKAHQVRPAILMMEEMPS 231

Query: 228 FSLRKFVWSFTRL-------RDLKSAYETLQHMVALAM-MGKLYINRTSEGRLRSSRLDI 279
           + L     +FT +        +L  A    + MV        + +N    G  +  R+D 
Sbjct: 232 YGLSPDETTFTTIMQGYIEGGNLDGALRIKEQMVEYGCPCTDVTVNVLINGFCKQGRIDQ 291

Query: 280 PIPLNALPVMKVLR---WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIR 336
            +      V +  R   ++++ +++   +  ++  A +++  M   GL P  +TY+  I 
Sbjct: 292 ALSFIQEAVSEGFRPDQFTYNTLVNGLCKIGHAKHAMEVVDAMLLGGLDPDIYTYNSLIS 351

Query: 337 AIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPK 396
            +     +   +++L  M   +  P   T   +     K   +D A     +I+R    K
Sbjct: 352 GLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAIISSLCKENRVDEAT----EIARLLTSK 407

Query: 397 -------PFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEE 448
                   F++ +         + A+ +F +M+ K  RPD  TY +L             
Sbjct: 408 GILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGCRPDEFTYNML------------- 454

Query: 449 GNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLG 508
                 +DS      +E  +             NLLK +   G  R ++           
Sbjct: 455 ------IDSLCSSRKLEEAL-------------NLLKEMELNGCARNVV----------- 484

Query: 509 TPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVS 568
              YNT++    + +    A EIF +M+  G+  ++ TYN +ID     +  + A+ L+ 
Sbjct: 485 --IYNTLIDGFCKNKRIEEAEEIFDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMD 542

Query: 569 MMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
            M+ +G  P   TY +L+      GD  +A +++  ++  G   D++ Y T++   C+ G
Sbjct: 543 QMIMEGLRPDKFTYNSLLTHFCKTGDIKKAADIVQTMTSSGCNPDIVTYATLISGLCKAG 602

Query: 629 RIDV 632
           R+ V
Sbjct: 603 RVQV 606



 Score = 43.1 bits (100), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 56/249 (22%), Positives = 103/249 (41%), Gaps = 18/249 (7%)

Query: 107 METWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLG 166
           M+ +  M+ K    +   Y +++ +LC    LEEA NL+  + E  G    + +YN+ + 
Sbjct: 433 MDLFEEMKGKGCRPDEFTYNMLIDSLCSSRKLEEALNLLKEM-ELNGCARNVVIYNTLID 491

Query: 167 ACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYSL 225
              K   +  A    D M+ + V ++ VTY  L+      K +    ++ +  I +    
Sbjct: 492 GFCKNKRIEEAEEIFDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEGLRP 551

Query: 226 SIFSLRKFVWSFTRLRDLKSAYETLQHMVA------LAMMGKLYINRTSEGRLR-SSRLD 278
             F+    +  F +  D+K A + +Q M +      +     L       GR++ +SRL 
Sbjct: 552 DKFTYNSLLTHFCKTGDIKKAADIVQTMTSSGCNPDIVTYATLISGLCKAGRVQVASRLL 611

Query: 279 IPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAI 338
             I +     M +   +++ VI A  +   +  A +L  +M      P + TY       
Sbjct: 612 RSIQMKG---MVLTPHAYNPVIQALFKRNRTHEAMRLFREMLDKSEPPDAITYK------ 662

Query: 339 VSDRGLRNG 347
           +  RGL NG
Sbjct: 663 IVYRGLCNG 671


>gi|147840312|emb|CAN63985.1| hypothetical protein VITISV_001389 [Vitis vinifera]
          Length = 850

 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 95/383 (24%), Positives = 155/383 (40%), Gaps = 22/383 (5%)

Query: 311 LAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLS 370
           + E L+L   + G  P    +D  +R  V  R LR G E  ++++   L    +   +L 
Sbjct: 273 IVESLVLTYGNCGSNP--LVFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLL 330

Query: 371 VECSKALELDLAEALLDQISRC---TNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LR 426
               K   +DLA  +  ++ R     N    +  + A     K E      + M +K + 
Sbjct: 331 GGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVF 390

Query: 427 PDIRTYELLFSLFGNVNAPYEEG---NMFSQVDSAKRINAIEMDMARNNIQHSHISMKNL 483
           PD+ TY  L      +NA   +G     F  +DS             N I +        
Sbjct: 391 PDVVTYNTL------INAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTG-- 442

Query: 484 LKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPN 543
            K L A+G++ E+++      +P  T TYN +L           A  IF +M + G+ P+
Sbjct: 443 -KYLRAKGVLDEMLKI---GMSP-DTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPD 497

Query: 544 AATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLD 603
             +++ +I   S   C   A      M   G  P  + YT LI      G   EAL + D
Sbjct: 498 LVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRD 557

Query: 604 LVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
            +  +G   DV+ YNTIL   C++  +   + +  +M +  V PD  T   + +GY   G
Sbjct: 558 EMLEQGCXLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYXKDG 617

Query: 664 FHNSAMEALQVLSMRMLCEEVST 686
             N A+   +++  R L  +V T
Sbjct: 618 NMNKAVTLFEMMIQRNLKPDVVT 640



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 98/427 (22%), Positives = 163/427 (38%), Gaps = 67/427 (15%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A +LM  M   GL+P   TY+  I  +           VL  M +  + P  +T   L V
Sbjct: 412 AFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLV 471

Query: 372 ECSKALELDLAEALLDQI-SRCTNPK--PFSAFLAACDTMDKPERAIKIFAKMRQK-LRP 427
           EC +   +  AE + D++ S+   P    FSA +         ++A+K F  M+   L P
Sbjct: 472 ECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAP 531

Query: 428 DIRTYELLFSLF---GNVNAP-------YEEGNMFSQVDSAKRINAI-------EMD--- 467
           D   Y +L   F   G ++          E+G     V     +N +       E D   
Sbjct: 532 DNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCXLDVVTYNTILNGLCKEKMLSEADELF 591

Query: 468 --MARNNIQHSHISMKNLLKALGAEGMIRELIQYF---CDSKTPLGTPTYNTVLHSLVEA 522
             M    +     +   L+     +G + + +  F             TYNT++    + 
Sbjct: 592 TEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKG 651

Query: 523 QESHRAMEIFKQMKTCGIPPNAATYNIMID-----------------------------C 553
            E  +  E++  M +  I PN  +Y I+I+                             C
Sbjct: 652 SEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITC 711

Query: 554 CSIIRCF------KSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSL 607
            +I++ +        A   +S M+  G  P  +TY  LI   +   + D A  L++ +  
Sbjct: 712 NTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMEN 771

Query: 608 EGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNS 667
            G+  DV+ YN IL     +GR+   E I+ +M +  V PD ST   + +G+V     N+
Sbjct: 772 SGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVT---QNN 828

Query: 668 AMEALQV 674
             EA +V
Sbjct: 829 LKEAFRV 835



 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 110/518 (21%), Positives = 207/518 (39%), Gaps = 70/518 (13%)

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
           MEEK +  +   Y  ++ A C+ G LEEA  L+  +  + G+ P +  YN+ +    K  
Sbjct: 384 MEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGK-GLKPCVFTYNAIINGLCKTG 442

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDY--------IKHYS 224
             + A   LD M    +  +  TY  LL       N+     I+++         +  +S
Sbjct: 443 KYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFS 502

Query: 225 LSIFSLRK---FVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRT-SEG-RLRSSRLDI 279
             I  L K      +    RD+K+A     +++   ++G    N   SE  ++R   L+ 
Sbjct: 503 ALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQ 562

Query: 280 PIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIV 339
              L+ +        +++ +++   + +    A++L  +M   G+ P  +T+   I    
Sbjct: 563 GCXLDVV--------TYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYX 614

Query: 340 SDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALL-DQISRCTNPK-- 396
            D  +   + + ++M Q NLKP   T  TL     K  E++    L  D ISR   P   
Sbjct: 615 KDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHI 674

Query: 397 PFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVD 456
            +   +     M     A +++ +M +K       +E        +   Y          
Sbjct: 675 SYGILINGYCNMGCVSEAFRLWDEMVEK------GFEATIITCNTIVKGY---------- 718

Query: 457 SAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVL 516
             +  NA++ D   +N+         LLK +  +G+                  TYNT++
Sbjct: 719 -CRAGNAVKADEFLSNM---------LLKGIVPDGI------------------TYNTLI 750

Query: 517 HSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFY 576
           +  ++ +   RA  +  +M+  G+ P+  TYN++++  S     + A  ++  M+  G  
Sbjct: 751 NGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVN 810

Query: 577 PQTMTYTALIKILLDYGDFDEALNLLDLVSLEG-IPHD 613
           P   TYT+LI   +   +  EA  + D +   G +P D
Sbjct: 811 PDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVPDD 848



 Score = 76.3 bits (186), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 79/362 (21%), Positives = 153/362 (42%), Gaps = 24/362 (6%)

Query: 311 LAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL- 369
           LA ++  ++   G+Q + +T +  I A+  ++ + N    L  M++  + P   T  TL 
Sbjct: 341 LAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLI 400

Query: 370 SVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDKPERAIKIFAKM-RQK 424
           +  C + L L+ A  L+D +S     KP    ++A +       K  RA  +  +M +  
Sbjct: 401 NAYCRQGL-LEEAFELMDSMSG-KGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIG 458

Query: 425 LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLL 484
           + PD  TY +L      V     +  M      A+RI     +M    +    +S   L+
Sbjct: 459 MSPDTATYNILL-----VECCRNDNMM-----DAERIFD---EMPSQGVVPDLVSFSALI 505

Query: 485 KALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIP 541
             L   G + + ++YF D K     P    Y  ++           A+++  +M   G  
Sbjct: 506 GLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCX 565

Query: 542 PNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNL 601
            +  TYN +++     +    A  L + M   G +P   T+T LI      G+ ++A+ L
Sbjct: 566 LDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTL 625

Query: 602 LDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVN 661
            +++    +  DV+ YNT++   C+   ++ +  +   M   ++ P+  +   + +GY N
Sbjct: 626 FEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCN 685

Query: 662 CG 663
            G
Sbjct: 686 MG 687


>gi|242058301|ref|XP_002458296.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
 gi|241930271|gb|EES03416.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
          Length = 1035

 Score = 87.4 bits (215), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 130/623 (20%), Positives = 244/623 (39%), Gaps = 86/623 (13%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGER--YGIYPILPVYNSFL-GACAKLHSMVHANLCL 181
           Y ++++ LC     EEA  L++ + +   +   P +  Y++ + G   +       NL L
Sbjct: 168 YNILLKGLCNEKRAEEALELLHMMADDQVWSCPPNVVSYSTVINGFFTEGQVDKPYNLFL 227

Query: 182 DLMDSRMVGKNEVTYTELL----KLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSF 237
           ++MD R +  + VTYT ++    K  ++ +  +   ++ ++ +K    +I +    +  +
Sbjct: 228 EMMD-RGIPPDVVTYTTVIDGLCKAQLFDRAEAVFQQMIDNGVKP---NIDTYNCLIHGY 283

Query: 238 TRLRDLKSAYETLQHMVA------LAMMGKLYINRTSEGRLRSSR--LDIPIPLNALPVM 289
             +   K     L+ M A          G L       GR R +R   D  I     P +
Sbjct: 284 LSIGKWKEVVRMLEEMSAGGPKPNCCTYGSLLNYLCKNGRCREARFFFDSMIGKGIKPSV 343

Query: 290 KVLRWSFSDVIHACGRTQNSGLAE--QLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNG 347
                ++  ++H  G      L+E   L+  M + G+ P+ H ++ F  A      +   
Sbjct: 344 T----TYGIMLH--GYATKGALSEMHDLLNLMVANGISPNHHIFNIFFSAYAKCGIIDKA 397

Query: 348 MEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPK--PFSAFLAA 404
           M++   M+Q  L P   +   L     K   +D AE   +Q I+    P    FS+ +  
Sbjct: 398 MDIFNKMRQQGLSPDAVSYGALIDALCKLGRVDDAEVKFNQMINEGVTPDIVVFSSLVYG 457

Query: 405 CDTMDKPERAIKIFAKM---------------------------RQKL---------RPD 428
             T+DK E+  ++F +M                            Q+L         RPD
Sbjct: 458 LCTVDKWEKVEELFFEMLNVGIHPNIVFFNTILCNLCKEGRVMEGQRLVDSIECMGVRPD 517

Query: 429 IRTYELLFSLFGNVNAPYEEGN-MFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL 487
           + +Y  L            +G+ +   +D A ++  +E  M    ++    S   LL   
Sbjct: 518 VISYNTLI-----------DGHCLAGTIDEASKL--LE-GMVSVGLKPDSFSYNTLLHGY 563

Query: 488 GAEGMIRELIQYF----CDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPN 543
              G I     +F     +  TP G  TYNT+LH L + +    A E++  M   G   +
Sbjct: 564 CKAGRIDSAYSHFRKMLSNGITP-GVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKWD 622

Query: 544 AATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLD 603
             TYNI+++      C   A  +   +   G     +T+  +I  LL  G  ++A++L  
Sbjct: 623 IYTYNIILNGLCKSNCVDEAIKMFQNLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFA 682

Query: 604 LVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
            +   G+  +V+ Y  +++   E+G ++  + +   M +N   P+    + +    ++ G
Sbjct: 683 AIPANGLVQNVVTYRLVVENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRG 742

Query: 664 FHNSAMEALQVLSMRMLCEEVST 686
             + A   L  L  R    E ST
Sbjct: 743 DISRAGAYLSKLDERNFSVEAST 765



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 82/192 (42%), Gaps = 6/192 (3%)

Query: 478 ISMKNLLKALGAEGMIRE---LIQYFCDSKT---PLGTPTYNTVLHSLVEAQESHRAMEI 531
           +S   LLK L  E    E   L+    D +    P    +Y+TV++      +  +   +
Sbjct: 166 VSYNILLKGLCNEKRAEEALELLHMMADDQVWSCPPNVVSYSTVINGFFTEGQVDKPYNL 225

Query: 532 FKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLD 591
           F +M   GIPP+  TY  +ID     + F  A A+   M+ +G  P   TY  LI   L 
Sbjct: 226 FLEMMDRGIPPDVVTYTTVIDGLCKAQLFDRAEAVFQQMIDNGVKPNIDTYNCLIHGYLS 285

Query: 592 YGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
            G + E + +L+ +S  G   +   Y ++L   C+ GR     F  + M    ++P  +T
Sbjct: 286 IGKWKEVVRMLEEMSAGGPKPNCCTYGSLLNYLCKNGRCREARFFFDSMIGKGIKPSVTT 345

Query: 652 CHFVFSGYVNCG 663
              +  GY   G
Sbjct: 346 YGIMLHGYATKG 357



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 80/168 (47%), Gaps = 4/168 (2%)

Query: 513 NTVLHSLVEAQESHRAMEIFKQ-MKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           N +L+ L + +    AM++  Q M   G  P+  +YNI++      +  + A  L+ MM 
Sbjct: 133 NQLLNGLCDGKRVGEAMDVLLQRMPELGCMPDTVSYNILLKGLCNEKRAEEALELLHMMA 192

Query: 572 RDGFY---PQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
            D  +   P  ++Y+ +I      G  D+  NL   +   GIP DV+ Y T++   C+  
Sbjct: 193 DDQVWSCPPNVVSYSTVINGFFTEGQVDKPYNLFLEMMDRGIPPDVVTYTTVIDGLCKAQ 252

Query: 629 RIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
             D  E + +QM  N V+P+  T + +  GY++ G     +  L+ +S
Sbjct: 253 LFDRAEAVFQQMIDNGVKPNIDTYNCLIHGYLSIGKWKEVVRMLEEMS 300



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 97/585 (16%), Positives = 221/585 (37%), Gaps = 60/585 (10%)

Query: 107 METWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEA-------------------SNLIYF 147
           M+ +  M ++ +  +   Y  ++ ALCK G +++A                   S+L+Y 
Sbjct: 398 MDIFNKMRQQGLSPDAVSYGALIDALCKLGRVDDAEVKFNQMINEGVTPDIVVFSSLVYG 457

Query: 148 LGE---------------RYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKN 192
           L                   GI+P +  +N+ L    K   ++     +D ++   V  +
Sbjct: 458 LCTVDKWEKVEELFFEMLNVGIHPNIVFFNTILCNLCKEGRVMEGQRLVDSIECMGVRPD 517

Query: 193 EVTYTELLKLAVWQKNLSAVHEIWEDYIK-HYSLSIFSLRKFVWSFTRLRDLKSAYETLQ 251
            ++Y  L+        +    ++ E  +        FS    +  + +   + SAY   +
Sbjct: 518 VISYNTLIDGHCLAGTIDEASKLLEGMVSVGLKPDSFSYNTLLHGYCKAGRIDSAYSHFR 577

Query: 252 HMVALAMM-GKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRW---SFSDVIHACGRTQ 307
            M++  +  G +  N    G  ++ R      L    +    +W   +++ +++   ++ 
Sbjct: 578 KMLSNGITPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKWDIYTYNIILNGLCKSN 637

Query: 308 NSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDST-- 365
               A ++   + S GLQ +  T++  I A++      + M++   +  N L     T  
Sbjct: 638 CVDEAIKMFQNLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAIPANGLVQNVVTYR 697

Query: 366 -IATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK 424
            +    +E     E D   + +++     N +  +A +          RA    +K+ ++
Sbjct: 698 LVVENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISRAGAYLSKLDER 757

Query: 425 -LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNL 483
               +  T  +L S+F +    +   ++  +       N+  +      I  ++    +L
Sbjct: 758 NFSVEASTTSMLISIFSSDEYQHHAKSLPKKYRILNEANSSALIKKARRIDDAY----SL 813

Query: 484 LKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPN 543
            + +  +G+  +++             TYNT+LH L +      A E++  M       N
Sbjct: 814 FREMLMKGLTPDVV-------------TYNTILHGLFQTGRFSEAKELYLSMINSRTQMN 860

Query: 544 AATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLD 603
             TYNI+++      C   A  +   +   G     +T+  +I  LL  G  ++A++L  
Sbjct: 861 IYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFA 920

Query: 604 LVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
            +   G+  DV+ Y  + +   E+G ++  + +   M ++    D
Sbjct: 921 AIPANGLVPDVVTYRLVAENLIEEGSLEEFDGLFLTMEKSGTPLD 965


>gi|356551942|ref|XP_003544331.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 545

 Score = 87.4 bits (215), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 85/376 (22%), Positives = 151/376 (40%), Gaps = 20/376 (5%)

Query: 318 QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKAL 377
           ++  LG QP++ T +  ++ +  +  ++  +     +     +    +   L     K  
Sbjct: 118 KILKLGYQPNTITLNTLMKGLCLEGKVKEALRFHDKVLAQGFRLSGISYGILINGVCKIG 177

Query: 378 ELDLAEALLDQISRCTNPKPFSAFLAACDTMDKP---ERAIKIFAKMRQK-LRPDIRTYE 433
           E   A  LL +I R +       +    D + K    + A  ++ +M  K + PD+ TY 
Sbjct: 178 ETRAAIRLLRRIERWSIRPNVVIYSMIIDRLCKDTLVDEAYDLYTEMVGKGISPDVVTYS 237

Query: 434 LLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMI 493
           +L S F  V      G +   +D          +M   NI     +   L+ AL  EG +
Sbjct: 238 ILVSGFCIV------GQLNRAIDLLN-------EMVLENINPDIYTYTILVDALCKEGKV 284

Query: 494 RE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIM 550
           +E   ++     +   L    Y+T++       E + A  +F  M   G+ P+   Y+IM
Sbjct: 285 KEAENVLAVMVKACVNLDVVVYSTLMDGYCLVNEVNNAKRVFYTMTQMGVTPDVHCYSIM 344

Query: 551 IDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGI 610
           I+    I+    A  L   + +    P T+TYT+LI  L   G      +L D +   G 
Sbjct: 345 INGLCKIKRVDEALNLFEEIHQKNMVPDTVTYTSLIDCLCKSGRISYVWDLFDEMLDRGQ 404

Query: 611 PHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAME 670
           P DV+ YN ++   C+ G +D    +  +M    ++P+  T   +  G    G   +A+E
Sbjct: 405 PPDVITYNNLIDALCKNGHLDRAIALFNKMKDQAIRPNVYTFTILLDGLCKVGRLKNALE 464

Query: 671 ALQVLSMRMLCEEVST 686
             Q L  +  C  V T
Sbjct: 465 FFQDLLTKGYCLNVRT 480



 Score = 76.6 bits (187), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 78/362 (21%), Positives = 146/362 (40%), Gaps = 21/362 (5%)

Query: 290 KVLRWS-------FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDR 342
           ++ RWS       +S +I    +      A  L  +M   G+ P   TY   +       
Sbjct: 188 RIERWSIRPNVVIYSMIIDRLCKDTLVDEAYDLYTEMVGKGISPDVVTYSILVSGFCIVG 247

Query: 343 GLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLD-QISRCTNPKP--FS 399
            L   +++L  M   N+ P   T   L     K  ++  AE +L   +  C N     +S
Sbjct: 248 QLNRAIDLLNEMVLENINPDIYTYTILVDALCKEGKVKEAENVLAVMVKACVNLDVVVYS 307

Query: 400 AFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSA 458
             +     +++   A ++F  M Q  + PD+  Y ++ +    +    E  N+F ++   
Sbjct: 308 TLMDGYCLVNEVNNAKRVFYTMTQMGVTPDVHCYSIMINGLCKIKRVDEALNLFEEIH-- 365

Query: 459 KRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHS 518
                 + +M  + + ++  S+ + L   G    + +L     D   P    TYN ++ +
Sbjct: 366 ------QKNMVPDTVTYT--SLIDCLCKSGRISYVWDLFDEMLDRGQPPDVITYNNLIDA 417

Query: 519 LVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQ 578
           L +     RA+ +F +MK   I PN  T+ I++D    +   K+A      ++  G+   
Sbjct: 418 LCKNGHLDRAIALFNKMKDQAIRPNVYTFTILLDGLCKVGRLKNALEFFQDLLTKGYCLN 477

Query: 579 TMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIE 638
             TYT +I  L   G  DEAL L   +   G   D + +  +++   +K   D  E ++ 
Sbjct: 478 VRTYTVMINGLCKEGLLDEALALQSRMEDNGCISDAVTFEIMIRAFFDKDENDKAEKLVR 537

Query: 639 QM 640
           +M
Sbjct: 538 EM 539



 Score = 57.0 bits (136), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 88/210 (41%), Gaps = 35/210 (16%)

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           +N +L SLV  +    A+ ++KQM+   + P+  T NI+I+C         A + VS ++
Sbjct: 61  FNKILISLVNVKRYPTAISLYKQMELSEVEPDYFTLNIIINCFCHFGQVVLAFSGVSKIL 120

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEG---------------------- 609
           + G+ P T+T   L+K L   G   EAL   D V  +G                      
Sbjct: 121 KLGYQPNTITLNTLMKGLCLEGKVKEALRFHDKVLAQGFRLSGISYGILINGVCKIGETR 180

Query: 610 -------------IPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVF 656
                        I  +V++Y+ I+ + C+   +D    +  +M    + PD  T   + 
Sbjct: 181 AAIRLLRRIERWSIRPNVVIYSMIIDRLCKDTLVDEAYDLYTEMVGKGISPDVVTYSILV 240

Query: 657 SGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           SG+   G  N A++ L  + +  +  ++ T
Sbjct: 241 SGFCIVGQLNRAIDLLNEMVLENINPDIYT 270


>gi|125592120|gb|EAZ32470.1| hypothetical protein OsJ_16686 [Oryza sativa Japonica Group]
          Length = 879

 Score = 87.4 bits (215), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 115/248 (46%), Gaps = 12/248 (4%)

Query: 429 IRTYELLFSLFGNVNAPYEEGNMFSQVDSA-KRINAIEMDMARNNIQHSHISMKNLLKAL 487
           I TY +L S F  +N      N+F +  +    +N I      +NI H+H    N+ +A 
Sbjct: 312 IVTYSILISGFAKINDSQSADNLFKEAKTKLSSLNGI----IYSNIIHAHCQSGNMERA- 366

Query: 488 GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATY 547
             E ++RE+ +   D+   +    Y++++H     Q  ++ + +F+++K CG  P+  +Y
Sbjct: 367 --EELVREMEEDGIDAPIDV----YHSMMHGYTIIQNENKCLVVFERLKECGFKPSIISY 420

Query: 548 NIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSL 607
             +++    I     A ++   M   G      TY+ LI   +   DF  A  + + +  
Sbjct: 421 GCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAIFEEMLR 480

Query: 608 EGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNS 667
            G+  D  +YN +++  C+ G +D    I+E+M + ++QP       +  GY   G   S
Sbjct: 481 SGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVAGDMKS 540

Query: 668 AMEALQVL 675
           A++ L ++
Sbjct: 541 ALDTLDLM 548



 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 88/425 (20%), Positives = 164/425 (38%), Gaps = 57/425 (13%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           +S++IHA  ++ N   AE+L+ +M+  G+      Y   +      +     + V + ++
Sbjct: 350 YSNIIHAHCQSGNMERAEELVREMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLK 409

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT---NPKPFSAFLAACDTMDKPE 412
           +   KP   +   L     K  ++  A ++  ++  C    N K +S  +     +    
Sbjct: 410 ECGFKPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFA 469

Query: 413 RAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471
            A  IF +M R  L+PD   Y LL   F  +      GNM        R   I   M + 
Sbjct: 470 NAFAIFEEMLRSGLQPDRAIYNLLIEAFCKM------GNM-------DRAICILEKMQKE 516

Query: 472 NIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPT---YNTVLHSLVEAQESHRA 528
            +Q S+ + + +++     G ++  +      +     PT   YN ++H LV   +  RA
Sbjct: 517 RMQPSNRAFRPIIEGYAVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRA 576

Query: 529 MEIFKQMKTCGIPPNAATYNIMID------------------------------------ 552
           + +  +M   GI PN  TY I++                                     
Sbjct: 577 VSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRA 636

Query: 553 CCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPH 612
           CC   R  +SA A+   M        T  Y  LI      GD  EA +L+  +  +G+P 
Sbjct: 637 CCKSGR-MQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPP 695

Query: 613 DVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEAL 672
           ++  Y + +   C+ G +   E +IE+M    ++P+  T   +  G+      + A++  
Sbjct: 696 NIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWARVSLPDRALKCF 755

Query: 673 QVLSM 677
           + + +
Sbjct: 756 EEMKL 760



 Score = 56.2 bits (134), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 10/142 (7%)

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
           + H A   F+ M+  GI PNA  +  ++   ++ R  + A + V  M  +G     +TY+
Sbjct: 257 DKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMRGALSCVEEMKSEGLELTIVTYS 316

Query: 584 ALIKILLDYGDFDEALNLL-----DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIE 638
            LI       D   A NL       L SL GI     +Y+ I+   C+ G ++  E ++ 
Sbjct: 317 ILISGFAKINDSQSADNLFKEAKTKLSSLNGI-----IYSNIIHAHCQSGNMERAEELVR 371

Query: 639 QMHQNKVQPDPSTCHFVFSGYV 660
           +M ++ +       H +  GY 
Sbjct: 372 EMEEDGIDAPIDVYHSMMHGYT 393


>gi|255557937|ref|XP_002519997.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540761|gb|EEF42321.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1429

 Score = 87.4 bits (215), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 79/368 (21%), Positives = 163/368 (44%), Gaps = 29/368 (7%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGME-VLKIM 354
            + ++   G+     LA ++ ++ +S  +  +   Y+  +  + +  G  N ++ +L +M
Sbjct: 179 LATILAVLGKANQEALAVEIFIRAEST-VDNTVQVYNAMM-GVYARTGRFNKVQGMLDLM 236

Query: 355 QQNNLKPQDSTIATL--SVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTM 408
           ++   +P   +  TL  +   + A+  ++A  LL+++ R +  +P    ++  ++AC   
Sbjct: 237 RERGCEPDLVSFNTLINARLKAGAMTPNVAIELLNEVRR-SGLRPDIITYNTLISACSRE 295

Query: 409 DKPERAIKIFAKMRQKL-RPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMD 467
              E A+K+F  M     +PD+ TY  + S++G      +   +F +++S          
Sbjct: 296 SNLEEAVKVFDDMEAHYCQPDLWTYNAMISVYGRCGFSGKAEQLFKELESKGYF------ 349

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLG----TPTYNTVLHSLVEAQ 523
                     ++  +LL A   EG + + ++  C+    +G      TYNT++H   +  
Sbjct: 350 -------PDAVTYNSLLYAFAREGNV-DKVKEICNEMVQMGFIRDEMTYNTIIHMYGKQG 401

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
           +   A+++++ MK  G  P+A TY ++ID          A+ ++S M+  G  P   TY+
Sbjct: 402 QHGLALQLYRDMKLSGRTPDAITYTVLIDSLGKANKMVEAANVMSEMLNIGVKPTLRTYS 461

Query: 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
           ALI      G   EA    D +   GI  D L Y+ +L              +  +M ++
Sbjct: 462 ALICGYARAGQRLEAEETFDCMRRSGIRPDQLAYSVMLDVFLRFDEATKAMMLYREMVRD 521

Query: 644 KVQPDPST 651
            + PDP+ 
Sbjct: 522 GITPDPTV 529



 Score = 65.1 bits (157), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 77/350 (22%), Positives = 143/350 (40%), Gaps = 25/350 (7%)

Query: 338 IVSDRGLRNGMEVLKIMQQNNLK----PQDSTIATLSVECSKALELDLA-EALLDQISRC 392
           +V   G  N    L++ +  NL+    P    +AT+     KA +  LA E  +   S  
Sbjct: 147 VVKWVGQENWQRALEVFEWLNLRHWYSPNARMLATILAVLGKANQEALAVEIFIRAESTV 206

Query: 393 TNP-KPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGN 450
            N  + ++A +       +  +   +   MR++   PD+ ++  L      +NA  + G 
Sbjct: 207 DNTVQVYNAMMGVYARTGRFNKVQGMLDLMRERGCEPDLVSFNTL------INARLKAGA 260

Query: 451 MFSQVDSAKRINAIEM--DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLG 508
           M   V       AIE+  ++ R+ ++   I+   L+ A   E  + E ++ F D +    
Sbjct: 261 MTPNV-------AIELLNEVRRSGLRPDIITYNTLISACSRESNLEEAVKVFDDMEAHYC 313

Query: 509 TP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASA 565
            P   TYN ++        S +A ++FK++++ G  P+A TYN ++   +          
Sbjct: 314 QPDLWTYNAMISVYGRCGFSGKAEQLFKELESKGYFPDAVTYNSLLYAFAREGNVDKVKE 373

Query: 566 LVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKAC 625
           + + MV+ GF    MTY  +I +    G    AL L   + L G   D + Y  ++    
Sbjct: 374 ICNEMVQMGFIRDEMTYNTIIHMYGKQGQHGLALQLYRDMKLSGRTPDAITYTVLIDSLG 433

Query: 626 EKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
           +  ++     ++ +M    V+P   T   +  GY   G    A E    +
Sbjct: 434 KANKMVEAANVMSEMLNIGVKPTLRTYSALICGYARAGQRLEAEETFDCM 483



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/195 (21%), Positives = 82/195 (42%), Gaps = 3/195 (1%)

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIREL---IQYFCDSKTPLGTPTYNTVLHSLVEAQE 524
           M R+    +  S+  LL+AL  +G + EL    Q   D    +   +   +L +      
Sbjct: 796 MMRDGPSPTVDSINGLLQALIVDGRLEELYVVTQEIQDMGFQISKSSILLILDAFARVSN 855

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
              A +I++ MK  G  P    Y IMI      +  +   A+V+ M   GF P    + +
Sbjct: 856 IAEAKKIYQGMKAAGYFPTMHLYRIMIGLLCKGKRVRDVEAMVTEMEEAGFRPDLSIWNS 915

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
           ++++     DF + + +   +  +G+  D   YNT++   C   R +    ++ +M +  
Sbjct: 916 MLRLYTGIDDFRKTVQIYQRIKEDGLQPDEDTYNTLIVMYCRDHRPEEGCSLMHEMRRIG 975

Query: 645 VQPDPSTCHFVFSGY 659
           ++P   T   + + +
Sbjct: 976 LEPKLDTYKSLIAAF 990



 Score = 53.5 bits (127), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 73/168 (43%), Gaps = 7/168 (4%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASA--LVS 568
           TYNT++ +         A+++F  M+     P+  TYN MI      RC  S  A  L  
Sbjct: 284 TYNTLISACSRESNLEEAVKVFDDMEAHYCQPDLWTYNAMISVYG--RCGFSGKAEQLFK 341

Query: 569 MMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
            +   G++P  +TY +L+      G+ D+   + + +   G   D + YNTI+    ++G
Sbjct: 342 ELESKGYFPDAVTYNSLLYAFAREGNVDKVKEICNEMVQMGFIRDEMTYNTIIHMYGKQG 401

Query: 629 RIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
           +  +   +   M  +   PD  T   +     + G  N  +EA  V+S
Sbjct: 402 QHGLALQLYRDMKLSGRTPDAITYTVLID---SLGKANKMVEAANVMS 446



 Score = 47.8 bits (112), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 60/290 (20%), Positives = 113/290 (38%), Gaps = 34/290 (11%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           W+++ +I   GR   SG AEQL  +++S G  P + TY+  + A   +  +    E+   
Sbjct: 318 WTYNAMISVYGRCGFSGKAEQLFKELESKGYFPDAVTYNSLLYAFAREGNVDKVKEICNE 377

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPER 413
           M Q      + T  T+     K  +  LA  L   +           +    D++ K  +
Sbjct: 378 MVQMGFIRDEMTYNTIIHMYGKQGQHGLALQLYRDMKLSGRTPDAITYTVLIDSLGKANK 437

Query: 414 AIKIFAKMRQKL----RPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
            ++    M + L    +P +RTY  L   +       E    F               M 
Sbjct: 438 MVEAANVMSEMLNIGVKPTLRTYSALICGYARAGQRLEAEETFDC-------------MR 484

Query: 470 RNNIQHSHISMKNLL-------KALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEA 522
           R+ I+   ++   +L       +A  A  + RE+++   D  TP  T  Y  +L +L   
Sbjct: 485 RSGIRPDQLAYSVMLDVFLRFDEATKAMMLYREMVR---DGITPDPT-VYGAMLRNLGRE 540

Query: 523 QESHRAMEIFKQM-KTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
            +      I + M + CG+ P A   +I++       C++ A+ ++ + +
Sbjct: 541 NKVEDIQRIIRDMEEVCGMNPQAIA-SILVKG----ECYEDAAGMLRLAI 585



 Score = 45.4 bits (106), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 87/422 (20%), Positives = 166/422 (39%), Gaps = 55/422 (13%)

Query: 296  FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
            +  +I  C   + +  A Q+   M+  G++PS   Y   +  +    G       L  + 
Sbjct: 667  YESLIQCCEENEFTAEASQIFSDMRFNGVKPSKSLYRSMV-LMYCKMGFPETAHYLIDLA 725

Query: 356  QNNLKPQDS-TIATLSVECSKALEL-DLAEALLDQI-SRCTN--PKPFSAFLAACDTMDK 410
            +    P D  +I    +E    L+L   AE+L+  +  RCTN   K ++A + A      
Sbjct: 726  EIEGMPFDKISIDVAVIETYGKLKLWQKAESLVGNLRQRCTNVDRKVWNALIQAYAASGC 785

Query: 411  PERAIKIF-AKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
             E+A  +F   MR    P +       S+ G + A   +G +       + I  +   ++
Sbjct: 786  YEQARAVFNTMMRDGPSPTVD------SINGLLQALIVDGRLEELYVVTQEIQDMGFQIS 839

Query: 470  RNNI--------QHSHIS-MKNLLKALGAEG------MIRELIQYFCDSKTPLGTPT--- 511
            +++I        + S+I+  K + + + A G      + R +I   C  K          
Sbjct: 840  KSSILLILDAFARVSNIAEAKKIYQGMKAAGYFPTMHLYRIMIGLLCKGKRVRDVEAMVT 899

Query: 512  -------------YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIR 558
                         +N++L       +  + ++I++++K  G+ P+  TYN +I    ++ 
Sbjct: 900  EMEEAGFRPDLSIWNSMLRLYTGIDDFRKTVQIYQRIKEDGLQPDEDTYNTLI----VMY 955

Query: 559  CF----KSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDV 614
            C     +   +L+  M R G  P+  TY +LI          +A  L + +  +G   D 
Sbjct: 956  CRDHRPEEGCSLMHEMRRIGLEPKLDTYKSLIAAFGKQQLVVDAEELFEELLSKGSKLDR 1015

Query: 615  LLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQV 674
              Y+ ++K     G     E ++  M    V+P  +T H +   Y + G      EA +V
Sbjct: 1016 SFYHIMMKIYRNSGNHSKAEKLLSMMKDAGVEPTIATMHLLMVSYGSSG---QPQEAEKV 1072

Query: 675  LS 676
            L+
Sbjct: 1073 LT 1074


>gi|226501158|ref|NP_001146427.1| uncharacterized protein LOC100280009 [Zea mays]
 gi|219887141|gb|ACL53945.1| unknown [Zea mays]
          Length = 522

 Score = 87.4 bits (215), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 71/355 (20%), Positives = 142/355 (40%), Gaps = 49/355 (13%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           AEQ++  +   GL P++  Y+  I      R LR    + + M+  +++P          
Sbjct: 175 AEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRP---------- 224

Query: 372 ECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIR 430
                          D I+       ++A +     ++   +A  +  +M +  + P + 
Sbjct: 225 ---------------DHIT-------YNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVE 262

Query: 431 TYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAE 490
           T+  L   +G                  ++   +  DM +  I+   IS  +++KA    
Sbjct: 263 TFNTLIDAYGTAG-------------QLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKN 309

Query: 491 GMIRELIQYFCD---SKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATY 547
           G I E +    D            YN+++ + +E+ ++ +A  + ++MK  G+  +  TY
Sbjct: 310 GKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTY 369

Query: 548 NIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSL 607
           N+++           A  L+  +   G  P  ++Y  +I    + GD D+AL LL  ++ 
Sbjct: 370 NLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNK 429

Query: 608 EGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNC 662
            GI   +  Y+T++      GR+  +E + +QM    V+P  S    +   YV C
Sbjct: 430 YGIRPTLRTYHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYVRC 484



 Score = 79.0 bits (193), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 74/373 (19%), Positives = 146/373 (39%), Gaps = 47/373 (12%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           +S++ VI    R+     A ++  +M  +G+ P+  TY+  I   V    L  G  +   
Sbjct: 17  FSYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGHVKGGDLEAGFRLRDQ 76

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPER 413
           M  +  KP   T   L     +A  +D    L+D+++                       
Sbjct: 77  MLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMAS---------------------- 114

Query: 414 AIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNI 473
                      + PD  TY +LF             +  ++   ++ + ++  +  +  +
Sbjct: 115 ---------HSMFPDGFTYSILF-------------DGLTRTGESRTMLSLFAESLKKGV 152

Query: 474 QHSHISMKNLLKALGAEGMI---RELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAME 530
                +   LL  L  +G +    ++++    +     T  YNT+++   + ++   A  
Sbjct: 153 MLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFC 212

Query: 531 IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590
           IF+QMK+  I P+  TYN +I+    +     A  LV  M + G  P   T+  LI    
Sbjct: 213 IFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYG 272

Query: 591 DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650
             G  ++   +L  +  +GI  DV+ + +++K  C+ G+I     I++ M    V P+  
Sbjct: 273 TAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQ 332

Query: 651 TCHFVFSGYVNCG 663
             + +   Y+  G
Sbjct: 333 VYNSIIDAYIESG 345



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 108/254 (42%), Gaps = 17/254 (6%)

Query: 414 AIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNN 472
           A  IF +M+ + +RPD  TY  L              N   +++   +   + M+M ++ 
Sbjct: 210 AFCIFEQMKSRHIRPDHITYNALI-------------NGLCKLEMVTKAEDLVMEMEKSG 256

Query: 473 IQHSHISMKNLLKALGAEGMIRELIQYFCDSK---TPLGTPTYNTVLHSLVEAQESHRAM 529
           +  S  +   L+ A G  G + +      D +         ++ +V+ +  +  +   A+
Sbjct: 257 VDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAV 316

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
            I   M    + PNA  YN +ID        + A  LV  M   G     +TY  L+K L
Sbjct: 317 AILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGL 376

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649
                 DEA  L+  +  +G+  DV+ YNTI+   C KG  D    ++++M++  ++P  
Sbjct: 377 CRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTL 436

Query: 650 STCHFVFSGYVNCG 663
            T H + S   + G
Sbjct: 437 RTYHTLVSALASAG 450



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 71/170 (41%)

Query: 506 PLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASA 565
           P    +YN V+  L  + +   A+++F +M   G+ PN  TYN MID        ++   
Sbjct: 13  PPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGHVKGGDLEAGFR 72

Query: 566 LVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKAC 625
           L   M+ DG  P  +TY  L+  L   G  DE   L+D ++   +  D   Y+ +     
Sbjct: 73  LRDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLT 132

Query: 626 EKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
             G    +  +  +  +  V     TC  + +G    G    A + L++L
Sbjct: 133 RTGESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEML 182



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 71/408 (17%), Positives = 163/408 (39%), Gaps = 48/408 (11%)

Query: 59  IVDALCRGERSRASHLLLNLGHAHHSLGADDFFH--ILNYCARSPDPLFVMETWRMMEEK 116
           ++  LCR  R   + +L++   A HS+  D F +  + +   R+ +   ++  +    +K
Sbjct: 92  LLSGLCRAGRMDETRVLMD-EMASHSMFPDGFTYSILFDGLTRTGESRTMLSLFAESLKK 150

Query: 117 EIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVH 176
            + L      +++  LCK G + +A  ++  L    G+ P   +YN+ +    ++  +  
Sbjct: 151 GVMLGAYTCSILLNGLCKDGKVAKAEQVLEML-VHTGLVPTTVIYNTLINGYCQVRDLRG 209

Query: 177 ANLCLDLMDSRMVGKNEVTYTELL----KLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRK 232
           A    + M SR +  + +TY  L+    KL +  K    V E+ +  +     S+ +   
Sbjct: 210 AFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDP---SVETFNT 266

Query: 233 FVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVL 292
            + ++     L+  +  L  M                 + +  + D+             
Sbjct: 267 LIDAYGTAGQLEKCFTVLSDM-----------------QQKGIKSDV------------- 296

Query: 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
             SF  V+ A  +      A  ++  M    + P++  Y+  I A +          +++
Sbjct: 297 -ISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVE 355

Query: 353 IMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTM 408
            M+ + +     T   L     ++ ++D AE L+  + R    +P    ++  ++AC   
Sbjct: 356 KMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTL-RNQGLRPDVVSYNTIISACCNK 414

Query: 409 DKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQV 455
              ++A+++  +M +  +RP +RTY  L S   +    ++   ++ Q+
Sbjct: 415 GDTDKALELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQM 462


>gi|358347154|ref|XP_003637626.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503561|gb|AES84764.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 989

 Score = 87.4 bits (215), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 89/379 (23%), Positives = 154/379 (40%), Gaps = 56/379 (14%)

Query: 311 LAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLS 370
           LAE ++ +M+   + P+  T+   I        L   ++VL+ M Q N+ P     A L 
Sbjct: 479 LAELVLQKMEKEHVPPNVITFSSIINGYAKKGMLSKAVDVLREMVQRNVMPNTIVYAILI 538

Query: 371 VECSKALELDLAEALLDQI-SRCTNPKP--FSAFLAACDTMDKPERAIKIFAKMRQK-LR 426
               KA E D+A+    ++ SR        F   L     + + + A  +   M  K + 
Sbjct: 539 DGYFKAGEQDVADDFCKEMKSRRLEESNVIFDILLNNLKRVGRMDEARSLIIDMYSKGID 598

Query: 427 PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKA 486
           PDI  Y  L      ++  ++EGN  + +       +I  +M   NI+   ++   L+K 
Sbjct: 599 PDIVNYASL------IDGYFKEGNQLAAL-------SIVQEMKEKNIRFDVVAYNALIKG 645

Query: 487 LGAEGMIRELIQYFCDSKTPLGTP----TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPP 542
           L   G      +Y C     LG      TYNT++++     ++  A++I  +MK+ GI P
Sbjct: 646 LLRLGKYDP--RYVCSRMIELGLAPDCITYNTIINTYCIKGKTEDALDILNEMKSYGIMP 703

Query: 543 NAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNL- 601
           NA TYNI                L+  + + GF P  +T+  L+K        D+ L + 
Sbjct: 704 NAVTYNI----------------LIGGLCKTGFVPTPITHKFLVKAYSRSEKADKILQIH 747

Query: 602 ----------------LDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
                           LD +   GI  D++ YN +++  C    ++       QM  + +
Sbjct: 748 EKLVASGLELKRQKVVLDEMVKRGISADLVTYNALIRGYCTGSHVEKALKTYSQMFVDGI 807

Query: 646 QPDPSTCHFVFSGYVNCGF 664
            P+ +T + +  G  N G 
Sbjct: 808 APNITTYNTLLGGLSNAGL 826



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 119/555 (21%), Positives = 207/555 (37%), Gaps = 66/555 (11%)

Query: 110 WRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACA 169
           +R M E  +  N+  Y  ++ +L K G + EA NL   +  R GI   +    + +    
Sbjct: 379 FREMYEMGLDPNHVSYATIINSLFKSGRVMEAFNLQSQMVVR-GISFDIVTCTTVMDGLF 437

Query: 170 KLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK-HYSLSIF 228
           K+     A    + +    +  N VTY+ LL        +     + +   K H   ++ 
Sbjct: 438 KVGKTKEAEEVFETILKLNLAPNCVTYSALLDGYCKLGKMELAELVLQKMEKEHVPPNVI 497

Query: 229 SLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRT-SEGRLRSSRLDIPIPLNALP 287
           +    +  + +   L  A + L+ MV   +M    +     +G  ++   D+    +   
Sbjct: 498 TFSSIINGYAKKGMLSKAVDVLREMVQRNVMPNTIVYAILIDGYFKAGEQDVAD--DFCK 555

Query: 288 VMKVLRWSFSDVI-----HACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDR 342
            MK  R   S+VI     +   R      A  L++ M S G+ P    Y   I     + 
Sbjct: 556 EMKSRRLEESNVIFDILLNNLKRVGRMDEARSLIIDMYSKGIDPDIVNYASLIDGYFKEG 615

Query: 343 GLRNGMEVLKIMQQNNLK----PQDSTIATL--------SVECSKALELDLAEALLDQIS 390
                + +++ M++ N++      ++ I  L           CS+ +EL LA    D I+
Sbjct: 616 NQLAALSIVQEMKEKNIRFDVVAYNALIKGLLRLGKYDPRYVCSRMIELGLAP---DCIT 672

Query: 391 RCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLF---GNVNAPY 446
                  ++  +       K E A+ I  +M+   + P+  TY +L       G V  P 
Sbjct: 673 -------YNTIINTYCIKGKTEDALDILNEMKSYGIMPNAVTYNILIGGLCKTGFVPTPI 725

Query: 447 ------------EEGNMFSQVDSA--------KRINAIEMDMARNNIQHSHISMKNLLKA 486
                       E+ +   Q+           KR   +  +M +  I    ++   L++ 
Sbjct: 726 THKFLVKAYSRSEKADKILQIHEKLVASGLELKRQKVVLDEMVKRGISADLVTYNALIRG 785

Query: 487 L----GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEA----QESHRAMEIFKQMKTC 538
                  E  ++   Q F D   P    TYNT+L  L  A    +      ++  +M   
Sbjct: 786 YCTGSHVEKALKTYSQMFVDGIAP-NITTYNTLLGGLSNAGLMEEMMEETEKLVSEMNER 844

Query: 539 GIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEA 598
           G+ PNAATY+I++     +   K    L   M+  GF P   TY  LI      G   EA
Sbjct: 845 GLVPNAATYDILVSGYGRVGNRKKTIILHIEMITKGFVPTLKTYNVLISDYAKSGKMIEA 904

Query: 599 LNLL-DLVSLEGIPH 612
             LL DL++   IP+
Sbjct: 905 RELLNDLLTKGRIPN 919



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/190 (22%), Positives = 84/190 (44%), Gaps = 11/190 (5%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           +Y T+++SL ++     A  +  QM   GI  +  T   ++D    +   K A  +   +
Sbjct: 393 SYATIINSLFKSGRVMEAFNLQSQMVVRGISFDIVTCTTVMDGLFKVGKTKEAEEVFETI 452

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           ++    P  +TY+AL+      G  + A  +L  +  E +P +V+ +++I+    +KG +
Sbjct: 453 LKLNLAPNCVTYSALLDGYCKLGKMELAELVLQKMEKEHVPPNVITFSSIINGYAKKGML 512

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST--LE 688
                ++ +M Q  V P+      +  GY   G  + A +          C+E+ +  LE
Sbjct: 513 SKAVDVLREMVQRNVMPNTIVYAILIDGYFKAGEQDVADD---------FCKEMKSRRLE 563

Query: 689 EKRSDFEDLI 698
           E    F+ L+
Sbjct: 564 ESNVIFDILL 573



 Score = 49.7 bits (117), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 69/170 (40%), Gaps = 12/170 (7%)

Query: 506 PLGTPTYNTVLHSLVEAQESH----RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFK 561
           P  T  Y +   +L+    +H     A   F  M+  G+ P    +N ++   +      
Sbjct: 52  PTKTHLYVSFFCTLIRLYLTHDRFSTASATFSHMRALGLVPTLPFWNTLLYQFNASGLVS 111

Query: 562 SASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL---DLVSLEGIPHDVLLYN 618
               + S M+  G  P   +   L+  L   GD D AL  L   D+V ++ +      YN
Sbjct: 112 QVKLMYSDMLFCGVVPDVFSVNVLVHSLCKVGDLDLALGYLRNNDVVDIDNVT-----YN 166

Query: 619 TILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSA 668
           T++   C+KG +D    ++ +M +  +  D  TC+ +  GY   G    A
Sbjct: 167 TVIWGFCQKGLVDQGFGLLSEMVKRGLCFDSITCNILVKGYCRIGLVQYA 216



 Score = 48.5 bits (114), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 71/383 (18%), Positives = 147/383 (38%), Gaps = 38/383 (9%)

Query: 324 LQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAE 383
           LQP+  TY   I A     G+     + K M  N + P   T +++     +  +L  A 
Sbjct: 317 LQPTLVTYTTLIAAYCKFVGVEESHSLYKKMIMNGIMPDVVTCSSILYGFCRHGKLTEAA 376

Query: 384 ALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ----KLRPDIRTYELLFSLF 439
            L  ++          ++    +++ K  R ++ F    Q     +  DI T   +    
Sbjct: 377 VLFREMYEMGLDPNHVSYATIINSLFKSGRVMEAFNLQSQMVVRGISFDIVTCTTVMDGL 436

Query: 440 GNVNAPYEEGNMFSQV----------------DSAKRINAIEM------DMARNNIQHSH 477
             V    E   +F  +                D   ++  +E+       M + ++  + 
Sbjct: 437 FKVGKTKEAEEVFETILKLNLAPNCVTYSALLDGYCKLGKMELAELVLQKMEKEHVPPNV 496

Query: 478 ISMKNLLKALGAEGM-------IRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAME 530
           I+  +++     +GM       +RE++Q          T  Y  ++    +A E   A +
Sbjct: 497 ITFSSIINGYAKKGMLSKAVDVLREMVQ----RNVMPNTIVYAILIDGYFKAGEQDVADD 552

Query: 531 IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590
             K+MK+  +  +   ++I+++    +     A +L+  M   G  P  + Y +LI    
Sbjct: 553 FCKEMKSRRLEESNVIFDILLNNLKRVGRMDEARSLIIDMYSKGIDPDIVNYASLIDGYF 612

Query: 591 DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650
             G+   AL+++  +  + I  DV+ YN ++K     G+ D   ++  +M +  + PD  
Sbjct: 613 KEGNQLAALSIVQEMKEKNIRFDVVAYNALIKGLLRLGKYDP-RYVCSRMIELGLAPDCI 671

Query: 651 TCHFVFSGYVNCGFHNSAMEALQ 673
           T + + + Y   G    A++ L 
Sbjct: 672 TYNTIINTYCIKGKTEDALDILN 694


>gi|302803484|ref|XP_002983495.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
 gi|300148738|gb|EFJ15396.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
          Length = 561

 Score = 87.4 bits (215), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 74/317 (23%), Positives = 140/317 (44%), Gaps = 19/317 (5%)

Query: 349 EVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTM 408
           + +++ ++    P + T  +L     KA +LD A  LLD++     P   +        +
Sbjct: 16  QAVQLFREERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIRGL 75

Query: 409 DKPER---AIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAI 464
            K  R   A+  F  +   K  PDI T+ +L      V+A  + G    +V+ A +I   
Sbjct: 76  CKAGRFGDALGYFKTVAGTKCTPDIITFNIL------VDALVKSG----RVEEAFQI--F 123

Query: 465 EMDMARNNIQHSHISMKNLLKALGAEGMIR---ELIQYFCDSKTPLGTPTYNTVLHSLVE 521
           E     +    + ++   ++  L  +G +    EL+    ++       TY+ ++  L +
Sbjct: 124 ESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCK 183

Query: 522 AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMT 581
           A  + +   + ++M   G  P+   YN +++     R    A  LV +M+R G YP  +T
Sbjct: 184 AGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVT 243

Query: 582 YTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMH 641
           Y +L+++       D A  L+ ++S  G P DV+ YNT++   C   R+D  + +++QM 
Sbjct: 244 YNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMV 303

Query: 642 QNKVQPDPSTCHFVFSG 658
             +  PD  T   +  G
Sbjct: 304 AARCVPDVITYSTIIDG 320



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 97/416 (23%), Positives = 160/416 (38%), Gaps = 76/416 (18%)

Query: 326 PSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEAL 385
           P+  TY   I  +  D  L   +E+L +M +    P   T + L     KA   D    L
Sbjct: 134 PNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTL 193

Query: 386 LDQISRCTNPKP----FSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFG 440
           L +++R    +P    ++  L       + + A+++   M R    P + TY  L  LF 
Sbjct: 194 LQEMTR-RGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFC 252

Query: 441 NVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL-------GAEGMI 493
                        QVD A R+  +   M+        I+   ++  L        A+ ++
Sbjct: 253 RSK----------QVDRAFRLIQV---MSERGCPPDVINYNTVIAGLCRDARLDDAQALL 299

Query: 494 RELIQYFCDSKTPLGTPTYNTVLHSL-----VEAQ-ESHRAMEIFKQMKTCGIPPNAATY 547
           ++++   C    P    TY+T++  L     V+A  +   A EI + MK  G PPNA TY
Sbjct: 300 KQMVAARC---VP-DVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTY 355

Query: 548 NIMIDCCSIIRCFKSASALV-----------------SMMVR--------DGFY------ 576
            ++I+   + R  KS  AL                  SM++         D  Y      
Sbjct: 356 AVVIE--GLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMM 413

Query: 577 ------PQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
                 P  + Y ALI  L   G+ D+A+ + +L+ +E     V  YN++L   C  GRI
Sbjct: 414 SERECKPNPVAYAALIDGLSKGGEVDKAVRVFELM-VESFRPGVATYNSVLDGLCGVGRI 472

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           +    ++E M   +  PD ++   +  G         A E  Q +  +    EV  
Sbjct: 473 EEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVGV 528



 Score = 70.9 bits (172), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 102/230 (44%), Gaps = 39/230 (16%)

Query: 482 NLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIP 541
           NLL   G  G   + +Q F + +      TY +++H L +A +  +A E+  +M+  GIP
Sbjct: 6   NLLVRAGQHG---QAVQLFREERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIP 62

Query: 542 PNAATYNIMI-DCCSIIRC------FKSASA------------LVSMMVRDG-------- 574
           P  A +N +I   C   R       FK+ +             LV  +V+ G        
Sbjct: 63  PGVAVHNGVIRGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQI 122

Query: 575 ---------FYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKAC 625
                      P  +TYT +I  L   G  D A+ LLDL++  G   +V+ Y+ +++  C
Sbjct: 123 FESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLC 182

Query: 626 EKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
           + GR D    ++++M +   QPD    + + +G       + A+E +Q++
Sbjct: 183 KAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLM 232



 Score = 66.6 bits (161), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 114/547 (20%), Positives = 211/547 (38%), Gaps = 44/547 (8%)

Query: 108 ETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGA 167
           +  ++  E+    N   Y  ++  LCK G L++A  L+  + +R GI P + V+N  +  
Sbjct: 16  QAVQLFREERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDR-GIPPGVAVHNGVIRG 74

Query: 168 CAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSL-- 225
             K      A      +       + +T+  L+   V    +    +I+E    H S   
Sbjct: 75  LCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESM--HTSSQC 132

Query: 226 --SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRT-SEGRLRSSRLDIPIP 282
             ++ +    +    +   L  A E L  M        +       EG  ++ R D    
Sbjct: 133 LPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFT 192

Query: 283 LNALPVMKVLRWSFS-DVI------HACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFI 335
           L    + ++ R  F  DVI      +   +++    A +L+  M   G  P+  TY+  +
Sbjct: 193 L----LQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLM 248

Query: 336 RAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI--SRCT 393
                 + +     ++++M +    P      T+     +   LD A+ALL Q+  +RC 
Sbjct: 249 ELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCV 308

Query: 394 -NPKPFSAFLAA------CDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAP 445
            +   +S  +         D   K E A +I   M+Q    P+  TY ++          
Sbjct: 309 PDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKS 368

Query: 446 YEEGNMFSQ-VDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSK 504
            +   +  + +DS    +     M   ++  SH    +L  A    GM+ E        +
Sbjct: 369 QQALALLRRMIDSEVVPDLSSFSMVIGSLCKSH----DLDAAYKIFGMMSE-------RE 417

Query: 505 TPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID-CCSIIRCFKSA 563
                  Y  ++  L +  E  +A+ +F+ M      P  ATYN ++D  C + R  + A
Sbjct: 418 CKPNPVAYAALIDGLSKGGEVDKAVRVFELMVE-SFRPGVATYNSVLDGLCGVGR-IEEA 475

Query: 564 SALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKK 623
             +V  M+    +P   +Y ALI+ L      +EA  L   V  +G   +V +YN ++ +
Sbjct: 476 VRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVGVYNVLVNE 535

Query: 624 ACEKGRI 630
            C+K R+
Sbjct: 536 LCKKKRL 542



 Score = 65.9 bits (159), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 77/380 (20%), Positives = 149/380 (39%), Gaps = 31/380 (8%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           +++  +IH   +      A +L+ +M+  G+ P    ++G IR +       + +   K 
Sbjct: 31  FTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIRGLCKAGRFGDALGYFKT 90

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI---SRC-TNPKPFSAFLAACDTMD 409
           +      P   T   L     K+  ++ A  + + +   S+C  N   ++  +       
Sbjct: 91  VAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDG 150

Query: 410 KPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
           K +RAI++   M +    P++ TY +L            EG    +     +   +  +M
Sbjct: 151 KLDRAIELLDLMNETGCCPNVITYSVLV-----------EG--LCKAGRTDKGFTLLQEM 197

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQES 525
            R   Q   I    LL  L     + E   L+Q    S       TYN+++     +++ 
Sbjct: 198 TRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQV 257

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMI-DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
            RA  + + M   G PP+   YN +I   C   R    A AL+  MV     P  +TY+ 
Sbjct: 258 DRAFRLIQVMSERGCPPDVINYNTVIAGLCRDAR-LDDAQALLKQMVAARCVPDVITYST 316

Query: 585 LI-------KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFII 637
           +I       ++  D+   + A  +L+++   G P +   Y  +++  C   +      ++
Sbjct: 317 IIDGLCKDWRVDADW-KLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALL 375

Query: 638 EQMHQNKVQPDPSTCHFVFS 657
            +M  ++V PD S+   V  
Sbjct: 376 RRMIDSEVVPDLSSFSMVIG 395



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 90/477 (18%), Positives = 173/477 (36%), Gaps = 77/477 (16%)

Query: 107 METWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLG 166
           +E   +M E     N   Y ++++ LCK G  ++   L+  +  R G  P + +YN+ L 
Sbjct: 156 IELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRR-GFQPDVIMYNTLLN 214

Query: 167 ACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLS-AVHEIWEDYIKHYSL 225
              K   +  A   + LM         VTY  L++L    K +  A   I     +    
Sbjct: 215 GLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPP 274

Query: 226 SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRT-SEGRLRSSRLDIPIPLN 284
            + +    +    R   L  A   L+ MVA   +  +    T  +G  +  R+D    L 
Sbjct: 275 DVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLE 334

Query: 285 ALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGL 344
           A                AC          +++  M+  G  P++ TY   I  +   R  
Sbjct: 335 A----------------AC----------EILEMMKQTGCPPNAGTYAVVIEGLCRARKS 368

Query: 345 RNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQIS--RCT-NPKPFSAF 401
           +  + +L+ M  + + P  S+ + +     K+ +LD A  +   +S   C  NP  ++A 
Sbjct: 369 QQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAAL 428

Query: 402 LAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI 461
           +       + ++A+++F  M +  RP + TY  +      V           +++ A R+
Sbjct: 429 IDGLSKGGEVDKAVRVFELMVESFRPGVATYNSVLDGLCGVG----------RIEEAVRM 478

Query: 462 NAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVE 521
                                       EGMI +  + F D        +Y  ++  L  
Sbjct: 479 ---------------------------VEGMIHK--ECFPDG------ASYGALIRGLCR 503

Query: 522 AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQ 578
                 A E+F+ ++  G       YN++++     +    A  + + ++  G+  Q
Sbjct: 504 VSCVEEAYELFQAVEAKGFAMEVGVYNVLVNELCKKKRLSDAHGVANKLIEAGYKQQ 560


>gi|225454948|ref|XP_002277434.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
           mitochondrial-like [Vitis vinifera]
          Length = 835

 Score = 87.4 bits (215), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 83/315 (26%), Positives = 127/315 (40%), Gaps = 16/315 (5%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           +E     M+ LGL P S T++  I A   +  L N +++L  M+   LKP   T   L  
Sbjct: 420 SESFHTGMRQLGLAPDSATFNTMINAYCKEGNLGNALKLLNEMKSYGLKPNSITCNILVQ 479

Query: 372 ECSKALELDLAEALL-DQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ----KLR 426
               A E++    LL D +    +P P +   A  D   K  RA  I     Q     ++
Sbjct: 480 RLCAAGEIEKTMDLLNDMLVMGFHPTP-TTHKAVLDASSKSRRADVILHMHDQLVGMGVK 538

Query: 427 PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKA 486
            D+ TY  L S F  +        +F  +     +  I   +  N + H +    +L KA
Sbjct: 539 LDLSTYNTLISTFCRLGMIRRATLVFKDMMGKGILADI---ITYNALIHGYCISSHLKKA 595

Query: 487 LGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAAT 546
                      Q   +  +P    TYN +L  L  A+    A  +  QMK  G+ PNA T
Sbjct: 596 FAVHS------QMLTEGVSP-NVETYNILLGGLSAARLIKEAAGLVNQMKERGLVPNATT 648

Query: 547 YNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVS 606
           Y+I++     I   K    L   M+  GF P+T TY  LI          +A  L+  + 
Sbjct: 649 YDILVSGHGKIGNMKECVKLYCEMITKGFVPKTRTYNVLISCFAKGKKMSQAKELMQEMQ 708

Query: 607 LEGIPHDVLLYNTIL 621
           + GIP +   Y+ ++
Sbjct: 709 VRGIPPNSSTYDILI 723



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/278 (21%), Positives = 129/278 (46%), Gaps = 21/278 (7%)

Query: 413 RAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471
           RA+++   M+ +   PDI TY  L + F  +      G++F+    AK++     +++  
Sbjct: 35  RAVELLEGMKTEGPAPDIVTYNTLMNGFCKI------GDLFT----AKKLMG---EISLV 81

Query: 472 NIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRA 528
           N++ + I+   L+ A      + + +  + +       P   TY  +++ L ++ +   A
Sbjct: 82  NLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGLCKSGKVEEA 141

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALV--SMMVRDGFYPQTMTYTALI 586
             +F++M+  G+ PN  +Y  +ID  S+ +    A A V    MV  G     + YTAL+
Sbjct: 142 KSVFREMEEVGVVPNRFSYATLID--SLFKEGNVAEAFVLQGRMVVRGIGFDVVVYTALM 199

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
             L   G  + A ++  ++  E +  + + Y+ ++   C+ G ++  E ++++M +  + 
Sbjct: 200 DGLFKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGDVNKGELLLQEMEEKHIF 259

Query: 647 PDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEV 684
           P+      +  GY   G  N AM+ ++ +  R +   V
Sbjct: 260 PNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQRNILPNV 297



 Score = 70.5 bits (171), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 114/557 (20%), Positives = 226/557 (40%), Gaps = 39/557 (7%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y  +M  LCK G +EEA ++   + E  G+ P    Y + + +  K  ++  A +    M
Sbjct: 125 YTCIMNGLCKSGKVEEAKSVFREM-EEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRM 183

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSL--SIFSLRKFVWSFTRLRD 242
             R +G + V YT L+   +++  ++   E     +   SL  +  +    +    +L D
Sbjct: 184 VVRGIGFDVVVYTALMD-GLFKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGD 242

Query: 243 LKSAYETLQ-----HMVALAMMGKLYINRTSEGRLRSSRLDIP---IPLNALPVMKVLRW 294
           +      LQ     H+    ++    ++  ++  L +  +D+    +  N LP +    +
Sbjct: 243 VNKGELLLQEMEEKHIFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQRNILPNV----F 298

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
            +  +I    +    G+A  L  +M+S GL+ ++   D F+  +     +    E+ K M
Sbjct: 299 VYGTLIDGYFKADQRGIALDLFKEMKSRGLEENNFVIDSFVNNLKRSGRMEEADELFKDM 358

Query: 355 QQNNLKPQDSTIATLSVECSKALE----LDLAEALLDQISRCTNPKPFSAFLAACDTMDK 410
               L P      ++     KA +     ++A+ + ++ S   +   ++  +     + K
Sbjct: 359 MSRGLLPDRVNYTSMMDGFFKAGKESDAFNIAQEMTEK-SSGFDVVAYNVLINGLFKLGK 417

Query: 411 PERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
            E        MRQ  L PD  T+  +      +NA  +EGN+    ++ K +N    +M 
Sbjct: 418 YESE-SFHTGMRQLGLAPDSATFNTM------INAYCKEGNLG---NALKLLN----EMK 463

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRA- 528
              ++ + I+   L++ L A G I + +    D       PT  T    L  + +S RA 
Sbjct: 464 SYGLKPNSITCNILVQRLCAAGEIEKTMDLLNDMLVMGFHPTPTTHKAVLDASSKSRRAD 523

Query: 529 --MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
             + +  Q+   G+  + +TYN +I     +   + A+ +   M+  G     +TY ALI
Sbjct: 524 VILHMHDQLVGMGVKLDLSTYNTLISTFCRLGMIRRATLVFKDMMGKGILADIITYNALI 583

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
                     +A  +   +  EG+  +V  YN +L        I     ++ QM +  + 
Sbjct: 584 HGYCISSHLKKAFAVHSQMLTEGVSPNVETYNILLGGLSAARLIKEAAGLVNQMKERGLV 643

Query: 647 PDPSTCHFVFSGYVNCG 663
           P+ +T   + SG+   G
Sbjct: 644 PNATTYDILVSGHGKIG 660



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 82/175 (46%), Gaps = 6/175 (3%)

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC-CSIIRCFKSASALVSMM 570
           +N ++       E  RA+E+ + MKT G  P+  TYN +++  C I   F +A  L+  +
Sbjct: 20  FNVLIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLF-TAKKLMGEI 78

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
                 P  +TYT LI         ++AL + D ++++ +  DV+ Y  I+   C+ G++
Sbjct: 79  SLVNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGLCKSGKV 138

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVS 685
           +  + +  +M +  V P+     F ++  ++  F    +    VL  RM+   + 
Sbjct: 139 EEAKSVFREMEEVGVVPN----RFSYATLIDSLFKEGNVAEAFVLQGRMVVRGIG 189



 Score = 53.1 bits (126), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 44/221 (19%), Positives = 89/221 (40%), Gaps = 7/221 (3%)

Query: 458 AKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNT 514
            + +N  +    R +++H ++    L+      G I   ++     KT    P   TYNT
Sbjct: 2   TRHLNTYQHPEIRRSVEHFNV----LIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNT 57

Query: 515 VLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDG 574
           +++   +  +   A ++  ++    + PN  TY  +ID     +C + A  +   M    
Sbjct: 58  LMNGFCKIGDLFTAKKLMGEISLVNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKS 117

Query: 575 FYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIE 634
             P  +TYT ++  L   G  +EA ++   +   G+  +   Y T++    ++G +    
Sbjct: 118 LVPDVVTYTCIMNGLCKSGKVEEAKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAF 177

Query: 635 FIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
            +  +M    +  D      +  G    G  N+A +  QVL
Sbjct: 178 VLQGRMVVRGIGFDVVVYTALMDGLFKAGMANNAEDMFQVL 218


>gi|334183626|ref|NP_176639.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122242336|sp|Q0WKZ3.1|PP105_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g64580
 gi|110741328|dbj|BAF02214.1| hypothetical protein [Arabidopsis thaliana]
 gi|332196134|gb|AEE34255.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 523

 Score = 87.4 bits (215), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 79/344 (22%), Positives = 144/344 (41%), Gaps = 22/344 (6%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A  L+  M   G  P+   Y+  I  +  +R L N +EV   M++  ++    T  TL  
Sbjct: 168 AVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLIS 227

Query: 372 ECSKALE-LDLAEALLDQISRCTNPKPFSAFLAACDTMDKPE---RAIKIFAKM-RQKLR 426
             S +    D A  L D + R  +P     F A  DT  K      A  ++ +M R+ + 
Sbjct: 228 GLSNSGRWTDAARLLRDMVKRKIDPNVI-FFTALIDTFVKEGNLLEARNLYKEMIRRSVV 286

Query: 427 PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKA 486
           P++ TY  L + F       +   MF  + S      +             ++   L+  
Sbjct: 287 PNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDV-------------VTYNTLITG 333

Query: 487 LGAEGMIRELIQYFCD--SKTPLGTP-TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPN 543
                 + + ++ FC+   +  +G   TYNT++H   +A + + A ++F +M  CG+ P+
Sbjct: 334 FCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPD 393

Query: 544 AATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLD 603
             TYNI++DC       + A  +V  + +       +TY  +I+ L       EA  L  
Sbjct: 394 IVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFR 453

Query: 604 LVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
            ++ +G+  D + Y T++   C KG     + +  +M ++   P
Sbjct: 454 SLTRKGVKPDAIAYITMISGLCRKGLQREADKLCRRMKEDGFMP 497



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/211 (22%), Positives = 93/211 (44%), Gaps = 13/211 (6%)

Query: 462 NAIEM--DMARNNIQHSHISMKNLLKALGAEG-------MIRELIQYFCDSKTPLGTPTY 512
           NA+E+   M +  I+   ++   L+  L   G       ++R++++   D         +
Sbjct: 202 NALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIF----F 257

Query: 513 NTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVR 572
             ++ + V+      A  ++K+M    + PN  TYN +I+   I  C   A  +  +MV 
Sbjct: 258 TALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVS 317

Query: 573 DGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDV 632
            G +P  +TY  LI         ++ + L   ++ +G+  D   YNT++   C+ G+++V
Sbjct: 318 KGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNV 377

Query: 633 IEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
            + +  +M    V PD  T + +     N G
Sbjct: 378 AQKVFNRMVDCGVSPDIVTYNILLDCLCNNG 408



 Score = 65.9 bits (159), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 91/196 (46%), Gaps = 5/196 (2%)

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLG----TPTYNTVLHSLVEAQ 523
           M +   + S +++ +LL         +E +    DS    G       YNTV++ L + +
Sbjct: 140 MMKLGFRPSIVTLGSLLNGFCQGNRFQEAVS-LVDSMDGFGFVPNVVIYNTVINGLCKNR 198

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
           + + A+E+F  M+  GI  +A TYN +I   S    +  A+ L+  MV+    P  + +T
Sbjct: 199 DLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFT 258

Query: 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
           ALI   +  G+  EA NL   +    +  +V  YN+++   C  G +   +++ + M   
Sbjct: 259 ALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSK 318

Query: 644 KVQPDPSTCHFVFSGY 659
              PD  T + + +G+
Sbjct: 319 GCFPDVVTYNTLITGF 334



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/249 (22%), Positives = 97/249 (38%), Gaps = 17/249 (6%)

Query: 414 AIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNN 472
           A+++F  M +K +R D  TY  L S   N              D+A+ +     DM +  
Sbjct: 203 ALEVFYCMEKKGIRADAVTYNTLISGLSNSG---------RWTDAARLLR----DMVKRK 249

Query: 473 IQHSHISMKNLLKALGAEGMI---RELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAM 529
           I  + I    L+     EG +   R L +            TYN++++          A 
Sbjct: 250 IDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAK 309

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
            +F  M + G  P+  TYN +I      +  +    L   M   G      TY  LI   
Sbjct: 310 YMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGY 369

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649
              G  + A  + + +   G+  D++ YN +L   C  G+I+    ++E + ++++  D 
Sbjct: 370 CQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDI 429

Query: 650 STCHFVFSG 658
            T + +  G
Sbjct: 430 ITYNIIIQG 438



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/184 (22%), Positives = 83/184 (45%), Gaps = 3/184 (1%)

Query: 500 FCDSKTPLGTPT---YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSI 556
           FC+       P+   +  VL  + +  +    + ++ +M+  GI  +  ++ I+I C   
Sbjct: 67  FCEMLQSRPIPSIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFTILIHCFCR 126

Query: 557 IRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLL 616
                 A AL+  M++ GF P  +T  +L+        F EA++L+D +   G   +V++
Sbjct: 127 CSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVI 186

Query: 617 YNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
           YNT++   C+   ++    +   M +  ++ D  T + + SG  N G    A   L+ + 
Sbjct: 187 YNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMV 246

Query: 677 MRML 680
            R +
Sbjct: 247 KRKI 250



 Score = 45.8 bits (107), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 46/225 (20%), Positives = 89/225 (39%), Gaps = 8/225 (3%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           T  ++L+   +      A+ +   M   G  PN   YN +I+     R   +A  +   M
Sbjct: 151 TLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCM 210

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
            + G     +TY  LI  L + G + +A  LL  +    I  +V+ +  ++    ++G +
Sbjct: 211 EKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNL 270

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEK 690
                + ++M +  V P+  T + + +G+   G    A     ++  +    +V T    
Sbjct: 271 LEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTL 330

Query: 691 RSDFEDLILAEDSEAESRILQFCEDSNENL---AFTAALLQLRWC 732
            + F      +    E  +  FCE + + L   AFT   L   +C
Sbjct: 331 ITGF-----CKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYC 370


>gi|242067235|ref|XP_002448894.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
 gi|241934737|gb|EES07882.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
          Length = 796

 Score = 87.4 bits (215), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 82/192 (42%), Gaps = 6/192 (3%)

Query: 478 ISMKNLLKALGAEGMIRE---LIQYFCDSKT---PLGTPTYNTVLHSLVEAQESHRAMEI 531
           +S   LLK    E    E   L+    D +    P    +YNTV++      +  +A  +
Sbjct: 167 VSYNTLLKGFCDENRAEEALELLHMMADGQVRSCPPNLVSYNTVINGFFTEGQVDKAYNL 226

Query: 532 FKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLD 591
           F  M   GIPPN  TY I+ID     +    A  +   M+  G  P  +TYT LI   L 
Sbjct: 227 FLDMTDQGIPPNVVTYTIVIDGLCKAQVVDRAEGVFQQMIDKGVRPNIVTYTCLIHGYLS 286

Query: 592 YGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
            G + E + +L  +S  G+  D   Y  +L   C+KG+      + + M +  ++PD S 
Sbjct: 287 IGQWKEVVRMLKEMSAHGLEPDCFTYGLLLDYLCKKGKCTEARKLFDSMIRKGIKPDVSI 346

Query: 652 CHFVFSGYVNCG 663
              +  GY   G
Sbjct: 347 YGIILHGYATKG 358



 Score = 85.9 bits (211), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 125/591 (21%), Positives = 232/591 (39%), Gaps = 56/591 (9%)

Query: 111 RMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFL--GERYGIYPILPVYNSFLGAC 168
           R M E     N   Y  +++  C     EEA  L++ +  G+     P L  YN+ +   
Sbjct: 155 RRMSELGCTPNVVSYNTLLKGFCDENRAEEALELLHMMADGQVRSCPPNLVSYNTVINGF 214

Query: 169 AKLHSMVHA-NLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYSLS 226
                +  A NL LD+ D + +  N VTYT ++      + +     +++  I K    +
Sbjct: 215 FTEGQVDKAYNLFLDMTD-QGIPPNVVTYTIVIDGLCKAQVVDRAEGVFQQMIDKGVRPN 273

Query: 227 IFSLRKFVWSFTRLRDLKSAYETLQHMVALAM------MGKLYINRTSEGRLRSSR--LD 278
           I +    +  +  +   K     L+ M A  +       G L      +G+   +R   D
Sbjct: 274 IVTYTCLIHGYLSIGQWKEVVRMLKEMSAHGLEPDCFTYGLLLDYLCKKGKCTEARKLFD 333

Query: 279 IPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAE--QLMLQMQSLGLQPSSHTYDGFIR 336
             I     P + +    +  ++H  G      L+E    +  M   G+ P+ + ++    
Sbjct: 334 SMIRKGIKPDVSI----YGIILH--GYATKGALSEMHSFLDLMVGNGISPNHYIFNIVFC 387

Query: 337 AIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI---SRCT 393
           A      +   M++   M+Q  L P     ATL     K   +D AE   +Q+       
Sbjct: 388 AFAKKAMIGEAMDIFNKMRQQGLSPNVVNYATLIDALCKLGRVDDAELKFNQMINEGVAP 447

Query: 394 NPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTY----------------ELLF 436
           N   F++ +    T+DK E+A ++F +M  Q + P++  +                + L 
Sbjct: 448 NIVVFTSLVYGLCTIDKWEKAGELFFEMVNQGIHPNVVFFNTIMCNLCTEGRVMKAQRLI 507

Query: 437 SLFGNV---------NAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL 487
            L   V         NA      +  + D A ++  I + +    ++ +  +   LL   
Sbjct: 508 DLMERVGTRPDIISYNALIRGHCLVGKTDEASKLLDIMLSVG---LKPNECTYNTLLHGY 564

Query: 488 GAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNA 544
             +G I +    F +  +   TP   TYNT+LH L + +    A E++  M T G   + 
Sbjct: 565 CRDGRIDDAYSVFQEMLSNGITPVVVTYNTILHGLFKTRRFSEAKELYLNMITSGKQWSI 624

Query: 545 ATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDL 604
            TYNI+++  S   C   A  +   +         +T+  +I  LL  G  ++A+NL   
Sbjct: 625 YTYNIILNGLSKNNCVDEALKMFQSLCSKDLQVDIITFNIMIGALLKDGRKEDAMNLFAT 684

Query: 605 VSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFV 655
           +S  G+  DV  Y  I +   E+G ++  + +  +M ++   P+    +F+
Sbjct: 685 ISANGLVPDVTTYRLIAENLIEEGSLEEFDGMFSEMEKSGCAPNSLMLNFL 735



 Score = 79.0 bits (193), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 88/204 (43%), Gaps = 10/204 (4%)

Query: 478 ISMKNLLKALGAEGMIRELIQYF---CDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQ 534
           +S   ++     EG + +    F    D   P    TY  V+  L +AQ   RA  +F+Q
Sbjct: 205 VSYNTVINGFFTEGQVDKAYNLFLDMTDQGIPPNVVTYTIVIDGLCKAQVVDRAEGVFQQ 264

Query: 535 MKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGD 594
           M   G+ PN  TY  +I     I  +K    ++  M   G  P   TY  L+  L   G 
Sbjct: 265 MIDKGVRPNIVTYTCLIHGYLSIGQWKEVVRMLKEMSAHGLEPDCFTYGLLLDYLCKKGK 324

Query: 595 FDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHF 654
             EA  L D +  +GI  DV +Y  IL     KG +  +   ++ M  N + P+    H+
Sbjct: 325 CTEARKLFDSMIRKGIKPDVSIYGIILHGYATKGALSEMHSFLDLMVGNGISPN----HY 380

Query: 655 VFSGYVNCGFHNSAM--EALQVLS 676
           +F+  V C F   AM  EA+ + +
Sbjct: 381 IFN-IVFCAFAKKAMIGEAMDIFN 403



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 85/383 (22%), Positives = 150/383 (39%), Gaps = 49/383 (12%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ VI    + Q    AE +  QM   G++P+  TY   I   +S    +  + +LK M
Sbjct: 241 TYTIVIDGLCKAQVVDRAEGVFQQMIDKGVRPNIVTYTCLIHGYLSIGQWKEVVRMLKEM 300

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERA 414
             + L+P   T   L         LD     L +  +CT  +                  
Sbjct: 301 SAHGLEPDCFTYGLL---------LDY----LCKKGKCTEAR------------------ 329

Query: 415 IKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNI 473
            K+F  M R+ ++PD+  Y ++   +    A  E   M S +D           M  N I
Sbjct: 330 -KLFDSMIRKGIKPDVSIYGIILHGYATKGALSE---MHSFLDL----------MVGNGI 375

Query: 474 QHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPT---YNTVLHSLVEAQESHRAME 530
             +H     +  A   + MI E +  F   +    +P    Y T++ +L +      A  
Sbjct: 376 SPNHYIFNIVFCAFAKKAMIGEAMDIFNKMRQQGLSPNVVNYATLIDALCKLGRVDDAEL 435

Query: 531 IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590
            F QM   G+ PN   +  ++     I  ++ A  L   MV  G +P  + +  ++  L 
Sbjct: 436 KFNQMINEGVAPNIVVFTSLVYGLCTIDKWEKAGELFFEMVNQGIHPNVVFFNTIMCNLC 495

Query: 591 DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650
             G   +A  L+DL+   G   D++ YN +++  C  G+ D    +++ M    ++P+  
Sbjct: 496 TEGRVMKAQRLIDLMERVGTRPDIISYNALIRGHCLVGKTDEASKLLDIMLSVGLKPNEC 555

Query: 651 TCHFVFSGYVNCGFHNSAMEALQ 673
           T + +  GY   G  + A    Q
Sbjct: 556 TYNTLLHGYCRDGRIDDAYSVFQ 578



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 78/370 (21%), Positives = 151/370 (40%), Gaps = 22/370 (5%)

Query: 314 QLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVEC 373
            +M   Q     P+  +Y+  I    ++  +     +   M    + P   T   +    
Sbjct: 190 HMMADGQVRSCPPNLVSYNTVINGFFTEGQVDKAYNLFLDMTDQGIPPNVVTYTIVIDGL 249

Query: 374 SKALELDLAEALLDQ-ISRCTNPK--PFSAFLAACDTMDKPERAIKIFAKMR-QKLRPDI 429
            KA  +D AE +  Q I +   P    ++  +    ++ + +  +++  +M    L PD 
Sbjct: 250 CKAQVVDRAEGVFQQMIDKGVRPNIVTYTCLIHGYLSIGQWKEVVRMLKEMSAHGLEPDC 309

Query: 430 RTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGA 489
            TY LL           E   +F   DS  R   I+ D++   I         +L     
Sbjct: 310 FTYGLLLDYLCKKGKCTEARKLF---DSMIR-KGIKPDVSIYGI---------ILHGYAT 356

Query: 490 EGMIRELIQYFCDSKTPLG-TPT---YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAA 545
           +G + E+   F D     G +P    +N V  +  +      AM+IF +M+  G+ PN  
Sbjct: 357 KGALSEM-HSFLDLMVGNGISPNHYIFNIVFCAFAKKAMIGEAMDIFNKMRQQGLSPNVV 415

Query: 546 TYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLV 605
            Y  +ID    +     A    + M+ +G  P  + +T+L+  L     +++A  L   +
Sbjct: 416 NYATLIDALCKLGRVDDAELKFNQMINEGVAPNIVVFTSLVYGLCTIDKWEKAGELFFEM 475

Query: 606 SLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFH 665
             +GI  +V+ +NTI+   C +GR+   + +I+ M +   +PD  + + +  G+   G  
Sbjct: 476 VNQGIHPNVVFFNTIMCNLCTEGRVMKAQRLIDLMERVGTRPDIISYNALIRGHCLVGKT 535

Query: 666 NSAMEALQVL 675
           + A + L ++
Sbjct: 536 DEASKLLDIM 545



 Score = 58.9 bits (141), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 79/168 (47%), Gaps = 8/168 (4%)

Query: 515 VLHSLVEAQESHRAMEIF-KQMKTCGIPPNAATYNIMIDC-CSIIRCFKSASALVSMMVR 572
           +L  L +A+    AM +  ++M   G  PN  +YN ++   C   R  + A  L+ MM  
Sbjct: 136 LLKGLCDAKRVGEAMGVLLRRMSELGCTPNVVSYNTLLKGFCDENRA-EEALELLHMMA- 193

Query: 573 DGFY----PQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
           DG      P  ++Y  +I      G  D+A NL   ++ +GIP +V+ Y  ++   C+  
Sbjct: 194 DGQVRSCPPNLVSYNTVINGFFTEGQVDKAYNLFLDMTDQGIPPNVVTYTIVIDGLCKAQ 253

Query: 629 RIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
            +D  E + +QM    V+P+  T   +  GY++ G     +  L+ +S
Sbjct: 254 VVDRAEGVFQQMIDKGVRPNIVTYTCLIHGYLSIGQWKEVVRMLKEMS 301


>gi|147771990|emb|CAN69053.1| hypothetical protein VITISV_022963 [Vitis vinifera]
          Length = 2021

 Score = 87.4 bits (215), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 90/392 (22%), Positives = 159/392 (40%), Gaps = 31/392 (7%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           ++  +I+   +  N+  A +L+  M+    QP    Y   I ++  DR +     +   M
Sbjct: 172 TYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQM 231

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPK--P----FSAFLAACDTM 408
               + P   T  +L        E      LL+Q+    N K  P    FS  + A    
Sbjct: 232 VGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQM---VNSKILPDVVIFSTVVDALCKE 288

Query: 409 DKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMF-SQVDSAKRINAIEM 466
            K   A +I   M Q+ + PD+ TY  L            +G+   S++D A  +   +M
Sbjct: 289 GKVTEAHEIVDMMIQRGVEPDVVTYTTLM-----------DGHCLQSEMDEA--VKVFDM 335

Query: 467 DMARNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQ 523
            M R       IS   L+        I +   L +  C  +    T TYNT+++ L    
Sbjct: 336 -MVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMYGLCHVG 394

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
               A+ +F +M   G  P+  TY+I++D     R  + A AL+  +      P    Y 
Sbjct: 395 RLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNRHLEEAMALLKAIEASNLNPDIQVYN 454

Query: 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
            +I  +   G+ + A +L   +S +G+   V  YN ++   C++G ++    +  +M  N
Sbjct: 455 IIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGN 514

Query: 644 KVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
              PD  T + +  G++    +N  + A+Q+L
Sbjct: 515 DCSPDGCTYNTIARGFLQ---NNETLRAIQLL 543



 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/274 (21%), Positives = 117/274 (42%), Gaps = 17/274 (6%)

Query: 394 NPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMF 452
           +P  F+  +       K   A+ +F KM  +  +P++ TY  L      +N   + GN  
Sbjct: 134 DPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTL------INGLCKVGNTS 187

Query: 453 SQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP-- 510
           + +   +        M + N Q   +   +++ +L  +  + E    F        +P  
Sbjct: 188 AAIRLLR-------SMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDI 240

Query: 511 -TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSM 569
            TY +++H+L    E      +  QM    I P+   ++ ++D          A  +V M
Sbjct: 241 FTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDM 300

Query: 570 MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
           M++ G  P  +TYT L+       + DEA+ + D++  +G   DV+ Y T++   C+  +
Sbjct: 301 MIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHK 360

Query: 630 IDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
           ID   ++ E+M + +  PD  T + +  G  + G
Sbjct: 361 IDKAMYLFEEMCRKEWIPDTKTYNTLMYGLCHVG 394



 Score = 70.1 bits (170), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 69/143 (48%)

Query: 506 PLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASA 565
           P     +  +L S+ + +     + +  QM + G+PPN  T NI+I+    +     A +
Sbjct: 62  PPSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILINSFCHLNRVGFAFS 121

Query: 566 LVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKAC 625
           +++ +++ G  P   T+T LI+ L   G   EAL+L D +  EG   +V+ Y T++   C
Sbjct: 122 VLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLC 181

Query: 626 EKGRIDVIEFIIEQMHQNKVQPD 648
           + G       ++  M Q   QPD
Sbjct: 182 KVGNTSAAIRLLRSMEQGNCQPD 204



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/202 (23%), Positives = 84/202 (41%), Gaps = 38/202 (18%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID-CCSI------IRCFKS- 562
           T+ T++  L    +   A+ +F +M   G  PN  TY  +I+  C +      IR  +S 
Sbjct: 137 TFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSM 196

Query: 563 ---------------------------ASALVSMMVRDGFYPQTMTYTALIKILLDYGDF 595
                                      A  L S MV  G  P   TYT+L+  L +  ++
Sbjct: 197 EQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEW 256

Query: 596 DEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFV 655
                LL+ +    I  DV++++T++   C++G++     I++ M Q  V+PD  T   +
Sbjct: 257 KHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTL 316

Query: 656 FSGYVNCGFHNSAMEALQVLSM 677
             G+      +   EA++V  M
Sbjct: 317 MDGHC---LQSEMDEAVKVFDM 335



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/144 (22%), Positives = 58/144 (40%)

Query: 505 TPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSAS 564
            P    T N +++S         A  +  ++   G  P+  T+  +I    +      A 
Sbjct: 96  VPPNVYTLNILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEAL 155

Query: 565 ALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKA 624
            L   M+ +GF P  +TY  LI  L   G+   A+ LL  +       DV++Y +I+   
Sbjct: 156 HLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSL 215

Query: 625 CEKGRIDVIEFIIEQMHQNKVQPD 648
           C+  ++     +  QM    + PD
Sbjct: 216 CKDRQVTEAFNLFSQMVGQGISPD 239


>gi|308082018|ref|NP_001183846.1| uncharacterized protein LOC100502439 [Zea mays]
 gi|238014984|gb|ACR38527.1| unknown [Zea mays]
 gi|414872746|tpg|DAA51303.1| TPA: hypothetical protein ZEAMMB73_971718 [Zea mays]
          Length = 623

 Score = 87.4 bits (215), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 69/285 (24%), Positives = 123/285 (43%), Gaps = 28/285 (9%)

Query: 405 CDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI--- 461
           C   D  +  + I  K +Q        ++L+  L G +   +E G + S     K +   
Sbjct: 194 CHCADSYDMMVDILGKFKQ--------FDLMCGLIGQM---HEIGGLVSLATMTKVMRRL 242

Query: 462 -------NAIEM--DMARNNIQHSHISMKNLLKALGAEGMIRELIQYF--CDSKTPLGTP 510
                  +AI+    M R  +     +M  LL  L  E  ++     F       P    
Sbjct: 243 CGANRWSDAIDAFHKMDRFGVAKDTKAMNVLLDTLCKERSVKRARGAFQALKGTIPPDES 302

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           ++NT++H   +A+    A E  K+M+  G  P+  TY  +I+   + + F++   ++  M
Sbjct: 303 SFNTLVHGWCKARMLKEARETMKEMERHGFSPSVTTYTCLIEAYCMEKDFQTVDGILDEM 362

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
              G  P  +TYT ++  L   G   EAL+  D V  +G   D   YN ++   C  GR+
Sbjct: 363 HTKGCTPNIITYTIVMHALGKAGRTQEALDTFDKVKQDGCALDASFYNCLIYILCRAGRL 422

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
               F++E+MH+  + P+ +T + + S   +   H+ A  AL++L
Sbjct: 423 QDANFVVEEMHRTGISPNLTTFNTLISAACD---HSLAENALKLL 464



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 84/188 (44%), Gaps = 3/188 (1%)

Query: 467 DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQ 523
           +M R+    S  +   L++A   E   + +     +  T   TP   TY  V+H+L +A 
Sbjct: 326 EMERHGFSPSVTTYTCLIEAYCMEKDFQTVDGILDEMHTKGCTPNIITYTIVMHALGKAG 385

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
            +  A++ F ++K  G   +A+ YN +I         + A+ +V  M R G  P   T+ 
Sbjct: 386 RTQEALDTFDKVKQDGCALDASFYNCLIYILCRAGRLQDANFVVEEMHRTGISPNLTTFN 445

Query: 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
            LI    D+   + AL LL  +  +    D+  Y  +LK  C +  +  + F+I  M + 
Sbjct: 446 TLISAACDHSLAENALKLLVQMEEQSCNPDIKTYTPLLKLCCRRKWVKTLLFLICHMFRK 505

Query: 644 KVQPDPST 651
            + PD ST
Sbjct: 506 DITPDFST 513



 Score = 43.9 bits (102), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 56/313 (17%), Positives = 124/313 (39%), Gaps = 21/313 (6%)

Query: 318 QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKAL 377
           +M   G+   +   +  +  +  +R ++      + ++   + P +S+  TL     KA 
Sbjct: 257 KMDRFGVAKDTKAMNVLLDTLCKERSVKRARGAFQALK-GTIPPDESSFNTLVHGWCKAR 315

Query: 378 ELDLAEALLDQISRCTNPKPFSAFLAACDT--MDKPERAIK-IFAKMRQK-LRPDIRTYE 433
            L  A   + ++ R       + +    +   M+K  + +  I  +M  K   P+I TY 
Sbjct: 316 MLKEARETMKEMERHGFSPSVTTYTCLIEAYCMEKDFQTVDGILDEMHTKGCTPNIITYT 375

Query: 434 LLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMI 493
           ++    G      E  + F +V    + +   +D +  N          L+  L   G +
Sbjct: 376 IVMHALGKAGRTQEALDTFDKV----KQDGCALDASFYNC---------LIYILCRAGRL 422

Query: 494 RE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIM 550
           ++   +++    +       T+NT++ +  +   +  A+++  QM+     P+  TY  +
Sbjct: 423 QDANFVVEEMHRTGISPNLTTFNTLISAACDHSLAENALKLLVQMEEQSCNPDIKTYTPL 482

Query: 551 IDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGI 610
           +  C   +  K+   L+  M R    P   TYT L+  L   G   ++   L+ + L+G 
Sbjct: 483 LKLCCRRKWVKTLLFLICHMFRKDITPDFSTYTLLVCWLCRNGRLTQSCLFLEEMVLKGF 542

Query: 611 PHDVLLYNTILKK 623
                 ++ +L+K
Sbjct: 543 TPQQATFDLVLEK 555



 Score = 40.0 bits (92), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 9/122 (7%)

Query: 92  HILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGER 151
           H L    R+ + L   +T+  +++    L+   Y  ++  LC+ G L++A N +     R
Sbjct: 379 HALGKAGRTQEAL---DTFDKVKQDGCALDASFYNCLIYILCRAGRLQDA-NFVVEEMHR 434

Query: 152 YGIYPILPVYNSFLGACAKLHSMVHANLCLDL-MDSRMVGKNEVTYTELLKLAV---WQK 207
            GI P L  +N+ + A    HS+    L L + M+ +    +  TYT LLKL     W K
Sbjct: 435 TGISPNLTTFNTLISAACD-HSLAENALKLLVQMEEQSCNPDIKTYTPLLKLCCRRKWVK 493

Query: 208 NL 209
            L
Sbjct: 494 TL 495


>gi|357494939|ref|XP_003617758.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519093|gb|AET00717.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 906

 Score = 87.4 bits (215), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 94/419 (22%), Positives = 169/419 (40%), Gaps = 35/419 (8%)

Query: 273 RSSRLDIPIPLNALPVMKVLRWS-----FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPS 327
           R  R+D  + L  L  MK   ++     ++  I   G+     +A +   +M++ GL P 
Sbjct: 250 REGRIDAALSL--LDEMKSNSFTADLVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGLVPD 307

Query: 328 SHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLD 387
             TY   I  +   R L   +E+ + +  N   P      T+ +    A + D A +LL+
Sbjct: 308 DVTYTTLIGVLCKARRLDEAVELFEELDLNRSVPCVYAYNTMIMGYGSAGKFDEAYSLLE 367

Query: 388 QISR---CTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLF---GN 441
           +  R     +   ++  L       K E A++I  +MRQ   P++ TY +L  +    G 
Sbjct: 368 RQKRKGCIPSVIAYNCILTCLGRKGKVEEALRIHDEMRQDAAPNLTTYNILIDMLCKAGE 427

Query: 442 VNAPYE------EGNMFSQVDSA-----KRINAIEMDMARN---NIQHSHISMKN----- 482
           + A  +      E  +F  + +      +   A ++D A +    + H   S  +     
Sbjct: 428 LEAALKVQDTMKEAGLFPNIMTVNIMIDRLCKAQKLDEACSIFLGLDHKVCSPDSRTFCS 487

Query: 483 LLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCG 539
           L+  LG  G + +   L +   DS        Y +++ +  +        +I+K+M   G
Sbjct: 488 LIDGLGRRGRVDDAYSLYEKMLDSDQIPNVVVYTSLIQNFFKCGRKEDGHKIYKEMVHRG 547

Query: 540 IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEAL 599
             P+    N  +DC       +   AL   +   G  P   +Y+ LI  L+  G   E  
Sbjct: 548 CSPDLMLLNSYMDCVFKAGEVEKGRALFEEIKAQGLVPDVRSYSILIHGLVKAGFSRETY 607

Query: 600 NLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
            L   +  +G+  DVL YNT++   C+ G++D    ++E+M    +QP   T   V  G
Sbjct: 608 KLFYEMKEQGLHLDVLAYNTVIDGFCKSGKVDKAYQLLEEMKTKGLQPTVVTYGSVVDG 666



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 91/389 (23%), Positives = 153/389 (39%), Gaps = 33/389 (8%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +F  +I   GR      A  L  +M      P+   Y   I+         +G ++ K M
Sbjct: 484 TFCSLIDGLGRRGRVDDAYSLYEKMLDSDQIPNVVVYTSLIQNFFKCGRKEDGHKIYKEM 543

Query: 355 QQNNLKPQDSTIATLSVECS-KALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDK 410
                 P D  +    ++C  KA E++   AL ++I       + + +S  +        
Sbjct: 544 VHRGCSP-DLMLLNSYMDCVFKAGEVEKGRALFEEIKAQGLVPDVRSYSILIHGLVKAGF 602

Query: 411 PERAIKIFAKMR-QKLRPDIRTYELLFSLF---GNVNAPYE-------EG------NMFS 453
                K+F +M+ Q L  D+  Y  +   F   G V+  Y+       +G         S
Sbjct: 603 SRETYKLFYEMKEQGLHLDVLAYNTVIDGFCKSGKVDKAYQLLEEMKTKGLQPTVVTYGS 662

Query: 454 QVDSAKRINAIE-----MDMARN-NIQHSHISMKNLLKALGAEGMIRE----LIQYFCDS 503
            VD   +I+ ++      + A++  +  + +   +L+   G  G I E    L +     
Sbjct: 663 VVDGLAKIDRLDEAYMLFEEAKSIGVDLNVVIYSSLIDGFGKVGRIDEAYLILEELMQKG 722

Query: 504 KTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSA 563
            TP  + T+N +L +LV+A+E   A   F+ MK     PNA TY+IMI+   +IR F  A
Sbjct: 723 LTP-NSYTWNCLLDALVKAEEIDEAQVCFQNMKNLKCSPNAMTYSIMINGLCMIRKFNKA 781

Query: 564 SALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKK 623
                 M + G  P  +TYT +I  L   G+  EA  L D     G   D   YN +++ 
Sbjct: 782 FVFWQEMQKQGLKPNNITYTTMIAGLAKAGNVMEARGLFDRFKASGGVPDSACYNAMIEG 841

Query: 624 ACEKGRIDVIEFIIEQMHQNKVQPDPSTC 652
                +      + E+      + +  TC
Sbjct: 842 LSSANKAMDAYIVFEETRLKGCRVNSKTC 870



 Score = 67.0 bits (162), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 98/460 (21%), Positives = 165/460 (35%), Gaps = 100/460 (21%)

Query: 304 GRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQD 363
            RT+N    EQ++ +M   G   S+H     + + V    L+    V+++M++   +P  
Sbjct: 144 ARTRNLDYLEQILEEMSVAGFGLSNHVSVELVASFVKSHKLKEAFGVIEMMRKFKFRPAF 203

Query: 364 STIATLSVECSKA-----------------------------------LELDLAEALLDQ 388
           S   TL    S A                                     +D A +LLD+
Sbjct: 204 SAYTTLIGALSAANRPDPMLTLFHQMQEIGYEANVHLFTTLVRVFAREGRIDAALSLLDE 263

Query: 389 ISRCTNPKPFSAFLAACD---TMDKPERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNA 444
           +   +       +    D    + K + A K F +M+ Q L PD  TY  L  +      
Sbjct: 264 MKSNSFTADLVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGLVPDDVTYTTLIGVLCKARR 323

Query: 445 PYEEGNMFSQVDSAKRI--------------NAIEMDMA--------RNNIQHSHISMKN 482
             E   +F ++D  + +              +A + D A        R     S I+   
Sbjct: 324 LDEAVELFEELDLNRSVPCVYAYNTMIMGYGSAGKFDEAYSLLERQKRKGCIPSVIAYNC 383

Query: 483 LLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCG 539
           +L  LG +G + E ++   D       P   TYN ++  L +A E   A+++   MK  G
Sbjct: 384 ILTCLGRKGKVEEALRIH-DEMRQDAAPNLTTYNILIDMLCKAGELEAALKVQDTMKEAG 442

Query: 540 IPPNAATYNIMID----------CCSII------------RCFKS-------------AS 564
           + PN  T NIMID           CSI             R F S             A 
Sbjct: 443 LFPNIMTVNIMIDRLCKAQKLDEACSIFLGLDHKVCSPDSRTFCSLIDGLGRRGRVDDAY 502

Query: 565 ALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKA 624
           +L   M+     P  + YT+LI+     G  ++   +   +   G   D++L N+ +   
Sbjct: 503 SLYEKMLDSDQIPNVVVYTSLIQNFFKCGRKEDGHKIYKEMVHRGCSPDLMLLNSYMDCV 562

Query: 625 CEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGF 664
            + G ++    + E++    + PD  +   +  G V  GF
Sbjct: 563 FKAGEVEKGRALFEEIKAQGLVPDVRSYSILIHGLVKAGF 602



 Score = 65.9 bits (159), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 105/562 (18%), Positives = 220/562 (39%), Gaps = 56/562 (9%)

Query: 98  ARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPI 157
           A  PDP+  +  +  M+E     N   +  +++   + G ++ A +L+  + +       
Sbjct: 216 ANRPDPMLTL--FHQMQEIGYEANVHLFTTLVRVFAREGRIDAALSLLDEM-KSNSFTAD 272

Query: 158 LPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWE 217
           L +YN  +    K+  +  A      M ++ +  ++VTYT L+ +    + L    E++E
Sbjct: 273 LVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGLVPDDVTYTTLIGVLCKARRLDEAVELFE 332

Query: 218 DYIKHYSLS-IFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSR 276
           +   + S+  +++    +  +        AY  L+                     +  +
Sbjct: 333 ELDLNRSVPCVYAYNTMIMGYGSAGKFDEAYSLLER--------------------QKRK 372

Query: 277 LDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIR 336
             IP  +           +++ ++   GR      A ++  +M+     P+  TY+  I 
Sbjct: 373 GCIPSVI-----------AYNCILTCLGRKGKVEEALRIHDEMRQ-DAAPNLTTYNILID 420

Query: 337 AIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEAL---LDQISRCT 393
            +     L   ++V   M++  L P   T+  +     KA +LD A ++   LD      
Sbjct: 421 MLCKAGELEAALKVQDTMKEAGLFPNIMTVNIMIDRLCKAQKLDEACSIFLGLDHKVCSP 480

Query: 394 NPKPFSAFLAACDTMDKPERAIKIFAKMRQKLR-PDIRTYELLFSLFGNVNAPYEEGNMF 452
           + + F + +       + + A  ++ KM    + P++  Y  L   F       E+G+  
Sbjct: 481 DSRTFCSLIDGLGRRGRVDDAYSLYEKMLDSDQIPNVVVYTSLIQNFFKCGRK-EDGH-- 537

Query: 453 SQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP-- 510
                      I  +M         + + + +  +   G + +    F + K     P  
Sbjct: 538 ----------KIYKEMVHRGCSPDLMLLNSYMDCVFKAGEVEKGRALFEEIKAQGLVPDV 587

Query: 511 -TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSM 569
            +Y+ ++H LV+A  S    ++F +MK  G+  +   YN +ID          A  L+  
Sbjct: 588 RSYSILIHGLVKAGFSRETYKLFYEMKEQGLHLDVLAYNTVIDGFCKSGKVDKAYQLLEE 647

Query: 570 MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
           M   G  P  +TY +++  L      DEA  L +     G+  +V++Y++++    + GR
Sbjct: 648 MKTKGLQPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSIGVDLNVVIYSSLIDGFGKVGR 707

Query: 630 IDVIEFIIEQMHQNKVQPDPST 651
           ID    I+E++ Q  + P+  T
Sbjct: 708 IDEAYLILEELMQKGLTPNSYT 729



 Score = 43.9 bits (102), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 40/198 (20%), Positives = 76/198 (38%), Gaps = 7/198 (3%)

Query: 476 SHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQM 535
           S +    L +A G   M+R+        K       Y T++ +L  A      + +F QM
Sbjct: 177 SFVKSHKLKEAFGVIEMMRKF-------KFRPAFSAYTTLIGALSAANRPDPMLTLFHQM 229

Query: 536 KTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDF 595
           +  G   N   +  ++   +      +A +L+  M  + F    + Y   I      G  
Sbjct: 230 QEIGYEANVHLFTTLVRVFAREGRIDAALSLLDEMKSNSFTADLVLYNVCIDCFGKVGKV 289

Query: 596 DEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFV 655
           D A      +  +G+  D + Y T++   C+  R+D    + E++  N+  P     + +
Sbjct: 290 DMAWKFFHEMKAQGLVPDDVTYTTLIGVLCKARRLDEAVELFEELDLNRSVPCVYAYNTM 349

Query: 656 FSGYVNCGFHNSAMEALQ 673
             GY + G  + A   L+
Sbjct: 350 IMGYGSAGKFDEAYSLLE 367


>gi|242048026|ref|XP_002461759.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
 gi|241925136|gb|EER98280.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
          Length = 896

 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 90/403 (22%), Positives = 174/403 (43%), Gaps = 34/403 (8%)

Query: 297 SDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQ 356
           +D++ A  RT+    AE+++  M+ L  +P+   Y   I A+   R     +E+L+ MQ+
Sbjct: 151 ADLVSALVRTRRLDDAERVIAAMRRLKFRPAFSAYTVLIGAMAEARQPERALELLRQMQE 210

Query: 357 NNLKPQDSTIATLSVECSKALELDLAEALLDQI-SRCTNPKPFSAFLAACDTMDKP---E 412
              +       TL    ++   ++ A AL+D++   C  P     +    D   K    +
Sbjct: 211 VGYEVGVPLFTTLVRALAREGRVEGALALVDEVKGSCLEPD-IVLYNVCIDCFGKAGNVD 269

Query: 413 RAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI---------- 461
            A K F +++ Q L+PD  +Y  +  +        E   +F Q+++ + +          
Sbjct: 270 MAWKFFHELKSQGLKPDDVSYTSMIWVLCKAGRLSEAEELFGQMETERAVPCAYAYNTMI 329

Query: 462 ----------NAIEM--DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPL-- 507
                     NA ++   +       S +S  ++L  LG +  + E +  F   K     
Sbjct: 330 MGYGSAGQFENAYKLLDQLKERGCIPSVVSFNSILTCLGKKRKVDEALTLFEAMKKDAEP 389

Query: 508 GTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALV 567
            + TYN ++  L  A +   A  I  +M+  G+ PN  T NIM+D     + F+ A  + 
Sbjct: 390 NSSTYNIIIDMLCMAGKVEEAYMIRDEMEHAGLFPNLLTVNIMVDRLCKAKKFEPAYEMF 449

Query: 568 SMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEK 627
               + G  P ++TY +LI  L   G+ D+A  L + +   G   + ++Y ++++     
Sbjct: 450 ETASQRGCNPNSVTYCSLIDGLGKKGNVDDAYRLFENMLDTGHNANPVVYTSLIRNFFMH 509

Query: 628 GRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAME 670
           GR +    I ++M++   QPD +    + + Y++C F    +E
Sbjct: 510 GRKEDGHKIFKEMNRRGCQPDLT----LLNTYMDCVFKAGDVE 548



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 76/358 (21%), Positives = 143/358 (39%), Gaps = 31/358 (8%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           ++  +I   G+  N   A +L   M   G   +   Y   IR         +G ++ K M
Sbjct: 463 TYCSLIDGLGKKGNVDDAYRLFENMLDTGHNANPVVYTSLIRNFFMHGRKEDGHKIFKEM 522

Query: 355 QQNNLKPQDSTIATLSVECS-KALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDK 410
            +   +P D T+    ++C  KA +++   A+ + I       + + +S  +       +
Sbjct: 523 NRRGCQP-DLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSYSILIHGLTKAGQ 581

Query: 411 PERAIKIFAKMRQK-LRPDIRTYELLFSLF---GNVNAPYE----------------EGN 450
                 IF  M+Q+    D R Y  +   F   G ++  YE                 G+
Sbjct: 582 ARETSSIFHAMKQQGFALDARAYNAVVDGFCKSGKLDKAYEVLEEMKVKRVPPTVATYGS 641

Query: 451 MFSQVDSAKRINAIEM---DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPL 507
           +   +    R++   M   +     I+ + I   +L+   G  G I E      +     
Sbjct: 642 IIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEEMMKKG 701

Query: 508 GTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSAS 564
            TP   T+N+++ +LV+A+E + A+  F+ MK     PN  TY+I+I+    ++ +  A 
Sbjct: 702 LTPNVYTWNSLMDALVKAEEINEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAF 761

Query: 565 ALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILK 622
                M + G  P  +TYT +I  L   G+  +A +L +     G   D   +N +++
Sbjct: 762 VFWQEMQKQGLVPNVVTYTTMIAGLAKVGNITDACSLFERFKANGGTPDAASFNALIE 819



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 79/376 (21%), Positives = 147/376 (39%), Gaps = 20/376 (5%)

Query: 318 QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKAL 377
           +M+  GL P+  T +  +  +   +      E+ +   Q    P   T  +L     K  
Sbjct: 416 EMEHAGLFPNLLTVNIMVDRLCKAKKFEPAYEMFETASQRGCNPNSVTYCSLIDGLGKKG 475

Query: 378 ELDLAEALLDQI---SRCTNPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYE 433
            +D A  L + +       NP  +++ +       + E   KIF +M R+  +PD+    
Sbjct: 476 NVDDAYRLFENMLDTGHNANPVVYTSLIRNFFMHGRKEDGHKIFKEMNRRGCQPDLT--- 532

Query: 434 LLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMI 493
            L + +  ++  ++ G++       ++  AI  D+          S   L+  L   G  
Sbjct: 533 -LLNTY--MDCVFKAGDV-------EKGRAIFEDIKGYGFLPDVRSYSILIHGLTKAGQA 582

Query: 494 RELIQYFCDSKT---PLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIM 550
           RE    F   K     L    YN V+    ++ +  +A E+ ++MK   +PP  ATY  +
Sbjct: 583 RETSSIFHAMKQQGFALDARAYNAVVDGFCKSGKLDKAYEVLEEMKVKRVPPTVATYGSI 642

Query: 551 IDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGI 610
           ID  + I     A  L       G     + Y++LI      G  DEA  +L+ +  +G+
Sbjct: 643 IDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEEMMKKGL 702

Query: 611 PHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAME 670
             +V  +N+++    +   I+      + M + K  P+  T   + +G      +N A  
Sbjct: 703 TPNVYTWNSLMDALVKAEEINEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFV 762

Query: 671 ALQVLSMRMLCEEVST 686
             Q +  + L   V T
Sbjct: 763 FWQEMQKQGLVPNVVT 778



 Score = 67.0 bits (162), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 75/389 (19%), Positives = 145/389 (37%), Gaps = 57/389 (14%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           S++ +I    +      AE+L  QM++    P ++ Y+  I    S     N  ++L  +
Sbjct: 289 SYTSMIWVLCKAGRLSEAEELFGQMETERAVPCAYAYNTMIMGYGSAGQFENAYKLLDQL 348

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERA 414
           ++    P  S ++                              F++ L       K + A
Sbjct: 349 KERGCIP--SVVS------------------------------FNSILTCLGKKRKVDEA 376

Query: 415 IKIFAKMRQKLRPDIRTYELLFSLF---GNVNAPY------EEGNMFSQ-------VD-- 456
           + +F  M++   P+  TY ++  +    G V   Y      E   +F         VD  
Sbjct: 377 LTLFEAMKKDAEPNSSTYNIIIDMLCMAGKVEEAYMIRDEMEHAGLFPNLLTVNIMVDRL 436

Query: 457 -SAKRIN-AIEM--DMARNNIQHSHISMKNLLKALGAEGMIRELIQYF---CDSKTPLGT 509
             AK+   A EM    ++     + ++  +L+  LG +G + +  + F    D+      
Sbjct: 437 CKAKKFEPAYEMFETASQRGCNPNSVTYCSLIDGLGKKGNVDDAYRLFENMLDTGHNANP 496

Query: 510 PTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSM 569
             Y +++ +           +IFK+M   G  P+    N  +DC       +   A+   
Sbjct: 497 VVYTSLIRNFFMHGRKEDGHKIFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFED 556

Query: 570 MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
           +   GF P   +Y+ LI  L   G   E  ++   +  +G   D   YN ++   C+ G+
Sbjct: 557 IKGYGFLPDVRSYSILIHGLTKAGQARETSSIFHAMKQQGFALDARAYNAVVDGFCKSGK 616

Query: 630 IDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
           +D    ++E+M   +V P  +T   +  G
Sbjct: 617 LDKAYEVLEEMKVKRVPPTVATYGSIIDG 645



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 73/310 (23%), Positives = 130/310 (41%), Gaps = 27/310 (8%)

Query: 379 LDLAEALLDQISRCTNPKPFSAF---LAACDTMDKPERAIKIFAKMRQKLRPDIRTYELL 435
           LD AE ++  + R      FSA+   + A     +PERA+++  +M++        YE+ 
Sbjct: 163 LDDAERVIAAMRRLKFRPAFSAYTVLIGAMAEARQPERALELLRQMQEV------GYEVG 216

Query: 436 FSLFGN-VNAPYEEGNM---FSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEG 491
             LF   V A   EG +    + VD  K  + +E D+   N+          +   G  G
Sbjct: 217 VPLFTTLVRALAREGRVEGALALVDEVKG-SCLEPDIVLYNV---------CIDCFGKAG 266

Query: 492 MIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYN 548
            +    ++F + K+    P   +Y +++  L +A     A E+F QM+T    P A  YN
Sbjct: 267 NVDMAWKFFHELKSQGLKPDDVSYTSMIWVLCKAGRLSEAEELFGQMETERAVPCAYAYN 326

Query: 549 IMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLE 608
            MI        F++A  L+  +   G  P  +++ +++  L      DEAL L + +  +
Sbjct: 327 TMIMGYGSAGQFENAYKLLDQLKERGCIPSVVSFNSILTCLGKKRKVDEALTLFEAMKKD 386

Query: 609 GIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSA 668
             P+    YN I+   C  G+++    I ++M    + P+  T + +            A
Sbjct: 387 AEPNSST-YNIIIDMLCMAGKVEEAYMIRDEMEHAGLFPNLLTVNIMVDRLCKAKKFEPA 445

Query: 669 MEALQVLSMR 678
            E  +  S R
Sbjct: 446 YEMFETASQR 455



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 96/503 (19%), Positives = 193/503 (38%), Gaps = 53/503 (10%)

Query: 115 EKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSM 174
           +K+   N+  Y +++  LC  G +EEA  +I    E  G++P L   N  +    K    
Sbjct: 384 KKDAEPNSSTYNIIIDMLCMAGKVEEAY-MIRDEMEHAGLFPNLLTVNIMVDRLCKAKKF 442

Query: 175 VHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYSLSIFSLRKF 233
             A    +    R    N VTY  L+     + N+   + ++E+ +   ++ +       
Sbjct: 443 EPAYEMFETASQRGCNPNSVTYCSLIDGLGKKGNVDDAYRLFENMLDTGHNANPVVYTSL 502

Query: 234 VWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLR 293
           + +F      +  ++  + M           NR      R  + D+ + LN         
Sbjct: 503 IRNFFMHGRKEDGHKIFKEM-----------NR------RGCQPDLTL-LN--------- 535

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
            ++ D +   G  +       +   ++  G  P   +Y   I  +      R    +   
Sbjct: 536 -TYMDCVFKAGDVEK---GRAIFEDIKGYGFLPDVRSYSILIHGLTKAGQARETSSIFHA 591

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPER 413
           M+Q            +     K+ +LD A  +L+++     P   + + +  D + K +R
Sbjct: 592 MKQQGFALDARAYNAVVDGFCKSGKLDKAYEVLEEMKVKRVPPTVATYGSIIDGLAKIDR 651

Query: 414 ---AIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
              A  +F + + K +  ++  Y  L   FG V           ++D A  I  +E +M 
Sbjct: 652 LDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKV----------GRIDEAYLI--LE-EMM 698

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELI---QYFCDSKTPLGTPTYNTVLHSLVEAQESH 526
           +  +  +  +  +L+ AL     I E +   Q   + K    T TY+ +++ L   Q+ +
Sbjct: 699 KKGLTPNVYTWNSLMDALVKAEEINEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYN 758

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
           +A   +++M+  G+ PN  TY  MI   + +     A +L      +G  P   ++ ALI
Sbjct: 759 KAFVFWQEMQKQGLVPNVVTYTTMIAGLAKVGNITDACSLFERFKANGGTPDAASFNALI 818

Query: 587 KILLDYGDFDEALNLLDLVSLEG 609
           + +       EA ++ +   L+G
Sbjct: 819 EGMSHANRAIEAYHVFEETRLKG 841



 Score = 43.9 bits (102), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 30/139 (21%), Positives = 59/139 (42%)

Query: 510 PTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSM 569
           P    ++ +LV  +    A  +   M+     P  + Y ++I   +  R  + A  L+  
Sbjct: 148 PACADLVSALVRTRRLDDAERVIAAMRRLKFRPAFSAYTVLIGAMAEARQPERALELLRQ 207

Query: 570 MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
           M   G+      +T L++ L   G  + AL L+D V    +  D++LYN  +    + G 
Sbjct: 208 MQEVGYEVGVPLFTTLVRALAREGRVEGALALVDEVKGSCLEPDIVLYNVCIDCFGKAGN 267

Query: 630 IDVIEFIIEQMHQNKVQPD 648
           +D+      ++    ++PD
Sbjct: 268 VDMAWKFFHELKSQGLKPD 286


>gi|222622248|gb|EEE56380.1| hypothetical protein OsJ_05522 [Oryza sativa Japonica Group]
          Length = 518

 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 69/323 (21%), Positives = 146/323 (45%), Gaps = 20/323 (6%)

Query: 348 MEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDT 407
           +EVL +MQ+   +P + T + L   C KA ++  A A+ D+ISR  +   ++  L+    
Sbjct: 43  VEVLSLMQEAGFEPNEVTYSNLLASCIKARDVHSARAMFDKISR-PSVTTWNTLLSGYCQ 101

Query: 408 MDKPERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM 466
            ++ +  I++F +M+ Q ++PD  T  ++ S    +            +D  +++++  +
Sbjct: 102 EEQHQDTIELFRRMQHQNVQPDRTTLAVILSSCSKLGI----------LDFGRQVHSASV 151

Query: 467 DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESH 526
               +N       + ++    G  G+ R +     +  T      +N+++  L     + 
Sbjct: 152 RFLLHNDMFVASGLVDMYSKCGQIGIARSIF----NKMTERDVVCWNSIISGLTIHSLNK 207

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
            A + FKQM+  GI P  ++Y  MI+ CS +        + + +++DG+       +ALI
Sbjct: 208 EAFDFFKQMRENGIMPTESSYASMINSCSRLSSIPHGRQIHAQVMKDGYDQNVYVGSALI 267

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
            +    G+ D+A    D + ++    +++ +N ++    + G  D    + E M   + +
Sbjct: 268 DMYAKCGNMDDARLFFDTMMMK----NIVAWNEMIHGYAQNGLGDKAVELFEYMLTTEQK 323

Query: 647 PDPSTCHFVFSGYVNCGFHNSAM 669
           PD  T   V +G  + G  + AM
Sbjct: 324 PDAVTFIAVLTGCSHSGLVDKAM 346



 Score = 50.1 bits (118), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 86/466 (18%), Positives = 169/466 (36%), Gaps = 93/466 (19%)

Query: 283 LNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDR 342
             +LP + ++ W+   +I   G+  +   A +++  MQ  G +P+  TY   + + +  R
Sbjct: 15  FESLPSVTIVSWNI--LITGFGQEGSCAKAVEVLSLMQEAGFEPNEVTYSNLLASCIKAR 72

Query: 343 GL-------------------------------RNGMEVLKIMQQNNLKPQDSTIATLSV 371
            +                               ++ +E+ + MQ  N++P  +T+A +  
Sbjct: 73  DVHSARAMFDKISRPSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVILS 132

Query: 372 ECSKALELD-------------------LAEALLDQISRCT---------------NPKP 397
            CSK   LD                   +A  L+D  S+C                +   
Sbjct: 133 SCSKLGILDFGRQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNKMTERDVVC 192

Query: 398 FSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVD 456
           +++ ++        + A   F +MR+  + P   +Y  + +            +  S + 
Sbjct: 193 WNSIISGLTIHSLNKEAFDFFKQMRENGIMPTESSYASMIN----------SCSRLSSIP 242

Query: 457 SAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVL 516
             ++I+A  M    +   +   ++ ++    G     R     F D+        +N ++
Sbjct: 243 HGRQIHAQVMKDGYDQNVYVGSALIDMYAKCGNMDDAR----LFFDTMMMKNIVAWNEMI 298

Query: 517 HSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRD-GF 575
           H   +     +A+E+F+ M T    P+A T+  ++  CS       A A  + M    G 
Sbjct: 299 HGYAQNGLGDKAVELFEYMLTTEQKPDAVTFIAVLTGCSHSGLVDKAMAFFNSMENSYGI 358

Query: 576 YPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIP--HDVLLYNTILKKACEKGRIDVI 633
            P    YT LI  L   G F E   L+  +  +  P   +VLL   ++    E G+    
Sbjct: 359 IPLAEHYTCLIDALGRAGRFVEVEALIHKMPCKDDPIIWEVLLAACVVHHNAELGK---- 414

Query: 634 EFIIEQMHQNKVQP-DPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678
                  H  ++ P +PS    + + Y + G H  A     ++S R
Sbjct: 415 ---CAAEHLFRIDPKNPSPYVLLSNIYASLGRHGDASAVRALMSNR 457



 Score = 46.2 bits (108), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 61/135 (45%), Gaps = 10/135 (7%)

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
           E   A+++F+ + +  I     ++NI+I           A  ++S+M   GF P  +TY+
Sbjct: 7   EMDEAVKVFESLPSVTI----VSWNILITGFGQEGSCAKAVEVLSLMQEAGFEPNEVTYS 62

Query: 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKAC-EKGRIDVIEFIIEQMHQ 642
            L+   +   D   A  + D +S       V  +NT+L   C E+   D IE      HQ
Sbjct: 63  NLLASCIKARDVHSARAMFDKISRP----SVTTWNTLLSGYCQEEQHQDTIELFRRMQHQ 118

Query: 643 NKVQPDPSTCHFVFS 657
           N VQPD +T   + S
Sbjct: 119 N-VQPDRTTLAVILS 132


>gi|357130476|ref|XP_003566874.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Brachypodium distachyon]
          Length = 810

 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 87/387 (22%), Positives = 170/387 (43%), Gaps = 31/387 (8%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           +  +I  C +   +  A +L  QM   GL PS+      ++ +++DR  ++ + + + M 
Sbjct: 335 YGVLIRGCDQVGMTQKAYELCRQMTGQGLLPSTFELSLVLKGLLNDRRWKDAVCLFEEMA 394

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDKP 411
            + L P   T   L     +A +L  A  L D++ +    KP    +++ L         
Sbjct: 395 DSGL-PDVFTYNNLIHWHCQAHKLREALNLFDRMKK-AGVKPSINTYNSLLMGYCKKGCM 452

Query: 412 ERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           + A+K++++M  +  +P++ TY    +L     A  +  N ++ +D  K+ N +  +   
Sbjct: 453 DEAVKLYSEMPMEGFKPNVVTY---ITLMRGYIAKKDFDNAYALLDEMKQ-NGVSCNDYT 508

Query: 471 NNIQHSHISM-------KNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQ 523
            N+  + I M         +LK+  +EG I  ++             TYN++++  V+A 
Sbjct: 509 YNVLINGICMVDRVCEVDGMLKSFMSEGFIPTMM-------------TYNSIINGFVKAG 555

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
               A  +++QM+  G+PPN  TY   ID      C   A  +++ + R G  P  + Y 
Sbjct: 556 MMGSAFTVYQQMREKGLPPNIITYTSFIDGYCRTGCSDMALKMLNDVRRRGLQPDIVAYN 615

Query: 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
           ALI      G+   AL LL ++  +G+  + ++YN+++        +  +    E M + 
Sbjct: 616 ALINGFCQEGNMSHALQLLVILLKDGLAPNTVVYNSLITGYKNLNMMKEVSKFYESMIKG 675

Query: 644 KVQPDPSTCHFVFSGYVNCGFHNSAME 670
            +  D ST   +  G+   G    A+E
Sbjct: 676 GIVADTSTYTTLIDGFSKDGNVAFALE 702



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 107/252 (42%), Gaps = 18/252 (7%)

Query: 496 LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCS 555
           L +   DS  P    TYN ++H   +A +   A+ +F +MK  G+ P+  TYN ++    
Sbjct: 389 LFEEMADSGLP-DVFTYNNLIHWHCQAHKLREALNLFDRMKKAGVKPSINTYNSLLMGYC 447

Query: 556 IIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVL 615
              C   A  L S M  +GF P  +TY  L++  +   DFD A  LLD +   G+  +  
Sbjct: 448 KKGCMDEAVKLYSEMPMEGFKPNVVTYITLMRGYIAKKDFDNAYALLDEMKQNGVSCNDY 507

Query: 616 LYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
            YN ++   C   R+  ++ +++        P   T + + +G+V  G   SA    Q +
Sbjct: 508 TYNVLINGICMVDRVCEVDGMLKSFMSEGFIPTMMTYNSIINGFVKAGMMGSAFTVYQQM 567

Query: 676 SMRMLCEEVSTLEEK-----RSDFEDLILAEDSEAESRILQ------------FCEDSNE 718
             + L   + T         R+   D+ L   ++   R LQ            FC++ N 
Sbjct: 568 REKGLPPNIITYTSFIDGYCRTGCSDMALKMLNDVRRRGLQPDIVAYNALINGFCQEGNM 627

Query: 719 NLAFTAALLQLR 730
           + A    ++ L+
Sbjct: 628 SHALQLLVILLK 639



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 90/417 (21%), Positives = 175/417 (41%), Gaps = 46/417 (11%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           ++  I A  +  + G A +++ +M+ +G      TY   +  +V    +   + V   M+
Sbjct: 230 YALAITALCKLGDGGRALRMLREMKEVGFDTCDFTYRTMVDVLVKTGRMEEALRVNDEMR 289

Query: 356 QNNLKPQDSTIAT-------LSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTM 408
               K  D  +AT       L  E   AL L   E L D I        +   +  CD +
Sbjct: 290 DAG-KKMDVIVATTLMRGYCLRQEVGNALNL-FKETLKDGI--VPTKVMYGVLIRGCDQV 345

Query: 409 DKPERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVN--------APYEE------GNMFS 453
              ++A ++  +M  Q L P   T+EL   L G +N          +EE       ++F+
Sbjct: 346 GMTQKAYELCRQMTGQGLLPS--TFELSLVLKGLLNDRRWKDAVCLFEEMADSGLPDVFT 403

Query: 454 -------QVDSAKRINAIEM--DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSK 504
                     + K   A+ +   M +  ++ S  +  +LL     +G + E ++ +  S+
Sbjct: 404 YNNLIHWHCQAHKLREALNLFDRMKKAGVKPSINTYNSLLMGYCKKGCMDEAVKLY--SE 461

Query: 505 TPL-----GTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID-CCSIIR 558
            P+        TY T++   +  ++   A  +  +MK  G+  N  TYN++I+  C + R
Sbjct: 462 MPMEGFKPNVVTYITLMRGYIAKKDFDNAYALLDEMKQNGVSCNDYTYNVLINGICMVDR 521

Query: 559 CFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYN 618
             +    L S M  +GF P  MTY ++I   +  G    A  +   +  +G+P +++ Y 
Sbjct: 522 VCEVDGMLKSFM-SEGFIPTMMTYNSIINGFVKAGMMGSAFTVYQQMREKGLPPNIITYT 580

Query: 619 TILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
           + +   C  G  D+   ++  + +  +QPD    + + +G+   G  + A++ L +L
Sbjct: 581 SFIDGYCRTGCSDMALKMLNDVRRRGLQPDIVAYNALINGFCQEGNMSHALQLLVIL 637



 Score = 69.3 bits (168), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 70/346 (20%), Positives = 136/346 (39%), Gaps = 20/346 (5%)

Query: 398 FSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVD 456
           F A ++AC      E A+++F +M   ++ PD R Y L  +    +    + G     + 
Sbjct: 195 FDALMSACLKEGMHEDAVRLFDEMPGAEIDPDQRVYALAITALCKLG---DGGRALRMLR 251

Query: 457 SAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVL 516
             K +     D     +    +    + +AL     +R       D+   +      T++
Sbjct: 252 EMKEVGFDTCDFTYRTMVDVLVKTGRMEEALRVNDEMR-------DAGKKMDVIVATTLM 304

Query: 517 HSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFY 576
                 QE   A+ +FK+    GI P    Y ++I  C  +   + A  L   M   G  
Sbjct: 305 RGYCLRQEVGNALNLFKETLKDGIVPTKVMYGVLIRGCDQVGMTQKAYELCRQMTGQGLL 364

Query: 577 PQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFI 636
           P T   + ++K LL+   + +A+ L + ++  G+P DV  YN ++   C+  ++     +
Sbjct: 365 PSTFELSLVLKGLLNDRRWKDAVCLFEEMADSGLP-DVFTYNNLIHWHCQAHKLREALNL 423

Query: 637 IEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEE------K 690
            ++M +  V+P  +T + +  GY   G  + A++    + M      V T          
Sbjct: 424 FDRMKKAGVKPSINTYNSLLMGYCKKGCMDEAVKLYSEMPMEGFKPNVVTYITLMRGYIA 483

Query: 691 RSDFEDLILAEDSEAESRILQFCEDSNENLAFTAALLQLRWCTIVG 736
           + DF++     D   ++ +   C D   N+      +  R C + G
Sbjct: 484 KKDFDNAYALLDEMKQNGV--SCNDYTYNVLINGICMVDRVCEVDG 527



 Score = 66.6 bits (161), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 120/588 (20%), Positives = 223/588 (37%), Gaps = 54/588 (9%)

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
           M   EI  + + Y L + ALCK G    A  ++  + E  G       Y + +    K  
Sbjct: 218 MPGAEIDPDQRVYALAITALCKLGDGGRALRMLREMKE-VGFDTCDFTYRTMVDVLVKTG 276

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRK 232
            M  A    D M       + +  T L++    ++ +     ++++ +K     I   + 
Sbjct: 277 RMEEALRVNDEMRDAGKKMDVIVATTLMRGYCLRQEVGNALNLFKETLKD---GIVPTKV 333

Query: 233 FVWSFTRLRD----LKSAYETLQHMVALAMMGKLY-INRTSEGRLRSSRLDIPIPL---- 283
                 R  D     + AYE  + M    ++   + ++   +G L   R    + L    
Sbjct: 334 MYGVLIRGCDQVGMTQKAYELCRQMTGQGLLPSTFELSLVLKGLLNDRRWKDAVCLFEEM 393

Query: 284 --NALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSD 341
             + LP +    ++++++IH   +      A  L  +M+  G++PS +TY+  +      
Sbjct: 394 ADSGLPDV----FTYNNLIHWHCQAHKLREALNLFDRMKKAGVKPSINTYNSLLMGYCKK 449

Query: 342 RGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPF 398
             +   +++   M     KP   T  TL        + D A ALLD++ +     N   +
Sbjct: 450 GCMDEAVKLYSEMPMEGFKPNVVTYITLMRGYIAKKDFDNAYALLDEMKQNGVSCNDYTY 509

Query: 399 SAFLAACDTMDK---PERAIKIFAKMRQKLRPDIRTYELLFSLF------GNVNAPY--- 446
           +  +     +D+    +  +K F  M +   P + TY  + + F      G+    Y   
Sbjct: 510 NVLINGICMVDRVCEVDGMLKSF--MSEGFIPTMMTYNSIINGFVKAGMMGSAFTVYQQM 567

Query: 447 -EEG------NMFSQVDSAKRINAIEM------DMARNNIQHSHISMKNLLKALGAEGMI 493
            E+G         S +D   R    +M      D+ R  +Q   ++   L+     EG +
Sbjct: 568 REKGLPPNIITYTSFIDGYCRTGCSDMALKMLNDVRRRGLQPDIVAYNALINGFCQEGNM 627

Query: 494 RELIQYFC----DSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNI 549
              +Q       D   P  T  YN+++             + ++ M   GI  + +TY  
Sbjct: 628 SHALQLLVILLKDGLAP-NTVVYNSLITGYKNLNMMKEVSKFYESMIKGGIVADTSTYTT 686

Query: 550 MIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEG 609
           +ID  S       A  L S M+  G+ P   T+TAL   L   GD D A  LL+ +    
Sbjct: 687 LIDGFSKDGNVAFALELYSEMMAKGYIPDAFTFTALTHGLCRSGDIDGAKKLLEEMRRLD 746

Query: 610 IPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFS 657
           +  +V +YN ++       ++     + ++M    +QPD +T   + S
Sbjct: 747 VRPNVFIYNMLINGYLRDCKLQEAFRLHDEMLNMGIQPDDTTYDILVS 794


>gi|449438016|ref|XP_004136786.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41720-like [Cucumis sativus]
          Length = 707

 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 82/374 (21%), Positives = 153/374 (40%), Gaps = 24/374 (6%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ +I+A GR      A  +M  M    + PS  T++  I A  S    R  + V K M
Sbjct: 67  TYNALINAHGRAGQWRWATNIMEDMLRAAIPPSRSTFNNLINACGSCGNWREALRVCKKM 126

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDK 410
             N + P   T   +        +   A +   ++ + TN +P     +  +     + +
Sbjct: 127 TDNGVGPDLVTHNIVLSAYKSGAQYSKALSYF-ELMKGTNIRPDTTTLNIVIHCLIKVKQ 185

Query: 411 PERAIKIFAKMRQK---LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMD 467
             +AI+IF+ MR+K    RPD+ T+  +  L+          ++  Q++  K   A+   
Sbjct: 186 YGQAIEIFSSMREKRSECRPDVVTFTSIIHLY----------SVRGQIEDCK---AVFST 232

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQE 524
           M    I+ + +S   L+ A  + GM +E    F + K     P   +Y +++ +   +Q+
Sbjct: 233 MLAEGIKPNIVSYNALISAYASHGMDKEAFSVFDEMKRSGFCPDVVSYTSLISTFGRSQQ 292

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
             RA E+F  MK     PN  +YN ++D          A  ++  M +DG +P  ++   
Sbjct: 293 PARAREVFDMMKRNKCKPNLVSYNALMDAYGSNGYLPQAVDILREMEQDGIHPNVVSICT 352

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
           L+     +G      ++L    L GI  + +  N+ +      G  +    +   M    
Sbjct: 353 LLAACGRFGQKVNIDSVLSAAELRGIHLNTIACNSAIGSYMNIGEYEKAINLYRSMENKT 412

Query: 645 VQPDPSTCHFVFSG 658
            +PD  T   + SG
Sbjct: 413 TKPDSVTFTILISG 426



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 85/425 (20%), Positives = 183/425 (43%), Gaps = 35/425 (8%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           S++ +I   GR+Q    A ++   M+    +P+  +Y+  + A  S+  L   +++L+ M
Sbjct: 279 SYTSLISTFGRSQQPARAREVFDMMKRNKCKPNLVSYNALMDAYGSNGYLPQAVDILREM 338

Query: 355 QQNNLKPQDSTIATLSVECSK---ALELD--LAEALLDQISRCTNPKPFSAFLAACDTMD 409
           +Q+ + P   +I TL   C +    + +D  L+ A L  I    N    ++ + +   + 
Sbjct: 339 EQDGIHPNVVSICTLLAACGRFGQKVNIDSVLSAAELRGIH--LNTIACNSAIGSYMNIG 396

Query: 410 KPERAIKIFAKMRQKL-RPDIRTYELLFSLFGNVNAPYEEGNMF------------SQVD 456
           + E+AI ++  M  K  +PD  T+ +L S    + + YEE   F            S++ 
Sbjct: 397 EYEKAINLYRSMENKTTKPDSVTFTILISGCCRM-SKYEEALCFFKEMLDLRIPLSSEIY 455

Query: 457 SA------KRINAIEMDMARNNIQHSH-----ISMKNLLKALGAEGM---IRELIQYFCD 502
           S+      K+   ++ +   N+++ S      ++   ++ A  A  M   +  L Q    
Sbjct: 456 SSMICAYSKQGQLVKAESLFNSLKGSGCCPDLVTYTAMINAYSASEMWEKVCALYQEMEA 515

Query: 503 SKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKS 562
           +   L +   + ++ +  +  ++   + + + MK  GIP N A +  M+  CSI+R ++ 
Sbjct: 516 NNIQLDSIACSALMKAFNKGNQASNVLILAEIMKEKGIPFNDANFFEMLSACSILRDWRK 575

Query: 563 ASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILK 622
           A+ L+++M          T   L++ L   G  +  + L       G   ++  Y+ +LK
Sbjct: 576 ATDLINLMEPSFHLVSLGTINHLLQFLGKSGKTEIMIKLFYRFVALGSSVNINTYSILLK 635

Query: 623 KACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCE 682
                G+      +++ M+   +QP  +  + +     +CG    A    + + MR+   
Sbjct: 636 NLLSAGKWRKYIEVLQWMNDAGIQPSHAMYNNILFFAQHCGDAEYAAVIKERVGMRLCIS 695

Query: 683 EVSTL 687
            +S +
Sbjct: 696 LISVV 700



 Score = 55.8 bits (133), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 63/291 (21%), Positives = 111/291 (38%), Gaps = 52/291 (17%)

Query: 409 DKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMD 467
           ++ ++A  +F +M++ + +PD+ TY  L +  G         N+               D
Sbjct: 44  NRIDQARGLFFEMQKWRCKPDVETYNALINAHGRAGQWRWATNIME-------------D 90

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP----TYNTVLHSLVEAQ 523
           M R  I  S  +  NL+ A G+ G  RE ++  C   T  G      T+N VL +     
Sbjct: 91  MLRAAIPPSRSTFNNLINACGSCGNWREALR-VCKKMTDNGVGPDLVTHNIVLSAYKSGA 149

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
           +  +A+  F+ MK   I P+  T NI+I C                              
Sbjct: 150 QYSKALSYFELMKGTNIRPDTTTLNIVIHC------------------------------ 179

Query: 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
            LIK+   YG   E  + +     E  P DV+ + +I+     +G+I+  + +   M   
Sbjct: 180 -LIKVK-QYGQAIEIFSSMREKRSECRP-DVVTFTSIIHLYSVRGQIEDCKAVFSTMLAE 236

Query: 644 KVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDF 694
            ++P+  + + + S Y + G    A      +     C +V +     S F
Sbjct: 237 GIKPNIVSYNALISAYASHGMDKEAFSVFDEMKRSGFCPDVVSYTSLISTF 287



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/214 (21%), Positives = 86/214 (40%), Gaps = 16/214 (7%)

Query: 484 LKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESH----RAMEIFKQMKTCG 539
           +K L   G I   +Q F   K        N + + ++     H    +A  +F +M+   
Sbjct: 1   MKELTQIGSIEHCVQVFDWMKNQRNYCARNDIYNMMIRLHARHNRIDQARGLFFEMQKWR 60

Query: 540 IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEAL 599
             P+  TYN +I+       ++ A+ ++  M+R    P   T+  LI      G++ EAL
Sbjct: 61  CKPDVETYNALINAHGRAGQWRWATNIMEDMLRAAIPPSRSTFNNLINACGSCGNWREAL 120

Query: 600 NLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
            +   ++  G+  D++ +N +L       +        E M    ++PD +T + V    
Sbjct: 121 RVCKKMTDNGVGPDLVTHNIVLSAYKSGAQYSKALSYFELMKGTNIRPDTTTLNIVIHCL 180

Query: 660 VNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSD 693
           +    +  A+E              S++ EKRS+
Sbjct: 181 IKVKQYGQAIEIF------------SSMREKRSE 202


>gi|242058007|ref|XP_002458149.1| hypothetical protein SORBIDRAFT_03g027690 [Sorghum bicolor]
 gi|241930124|gb|EES03269.1| hypothetical protein SORBIDRAFT_03g027690 [Sorghum bicolor]
          Length = 795

 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 95/392 (24%), Positives = 167/392 (42%), Gaps = 25/392 (6%)

Query: 299 VIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNN 358
           V+ AC   +  G A +L  +M   G++P    Y   I  +   R     ++VL  M++  
Sbjct: 194 VMRACVVGRMHGDAVRLFDEMAGAGVKPDERVYAITITGLCKLRDADRAVQVLGKMREAG 253

Query: 359 LKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTM-----DKPER 413
           LKP+D T  ++     K   +D A  L DQ+   T  K    FLA           +  +
Sbjct: 254 LKPRDFTYNSVVDVLVKVGRMDEALRLKDQMLLATG-KKMDVFLATTLMQGYCLHGEIGK 312

Query: 414 AIKIFAK-MRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNN 472
           A+ +F + +R  + P   TY +L           E   +  Q+        IE  +  + 
Sbjct: 313 ALDLFDEAVRDGVTPTNVTYTVLIKGCDAEGMTDETYKLCRQM--------IEQGLLPST 364

Query: 473 IQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIF 532
            +  ++ +K LL+    E  I  L     D+  P    TY  ++H L +  + H A+ ++
Sbjct: 365 YEF-NLVIKGLLRNKQWEDAI-ALFDLVVDTGVP-DVFTYGCLIHWLSKHHKVHEAVNLW 421

Query: 533 KQMKTCGIPPNAAT-YNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLD 591
            +MK  G+ P+  T +++++  C    C   A  L S M   GF P  +TYT L+K  + 
Sbjct: 422 DKMKEAGVKPSIVTCHSLLLGYCE-KGCMDEALKLYSEMPGKGFPPNEVTYTTLMKGYIK 480

Query: 592 YGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
              FD+A  LL+ +   G+      YN ++   C   R+  ++ ++++       P   T
Sbjct: 481 KKAFDKAYALLNEMHQNGVSCGEYTYNILINGLCMVDRVCEVDEMLKRFVSEGFVPTTMT 540

Query: 652 CHFVFSGYVNCGFHNSAMEALQVLSMRMLCEE 683
            + + +G+V  G   SA+        R +CE+
Sbjct: 541 YNSIINGFVKAGMMGSALAMY-----RQMCEK 567



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 88/433 (20%), Positives = 181/433 (41%), Gaps = 36/433 (8%)

Query: 305 RTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDS 364
           + +++  A Q++ +M+  GL+P   TY+  +  +V    +   + +   M     K  D 
Sbjct: 235 KLRDADRAVQVLGKMREAGLKPRDFTYNSVVDVLVKVGRMDEALRLKDQMLLATGKKMDV 294

Query: 365 TIAT-------LSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKI 417
            +AT       L  E  KAL+L   EA+ D ++  TN   ++  +  CD     +   K+
Sbjct: 295 FLATTLMQGYCLHGEIGKALDL-FDEAVRDGVTP-TNVT-YTVLIKGCDAEGMTDETYKL 351

Query: 418 FAKM-RQKLRPDIRTYEL----------------LFSLFGNVNAP--YEEGNMFSQVDSA 458
             +M  Q L P    + L                LF L  +   P  +  G +   +   
Sbjct: 352 CRQMIEQGLLPSTYEFNLVIKGLLRNKQWEDAIALFDLVVDTGVPDVFTYGCLIHWLSKH 411

Query: 459 KRIN-AIEM--DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCD---SKTPLGTPTY 512
            +++ A+ +   M    ++ S ++  +LL     +G + E ++ + +      P    TY
Sbjct: 412 HKVHEAVNLWDKMKEAGVKPSIVTCHSLLLGYCEKGCMDEALKLYSEMPGKGFPPNEVTY 471

Query: 513 NTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVR 572
            T++   ++ +   +A  +  +M   G+     TYNI+I+   ++        ++   V 
Sbjct: 472 TTLMKGYIKKKAFDKAYALLNEMHQNGVSCGEYTYNILINGLCMVDRVCEVDEMLKRFVS 531

Query: 573 DGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDV 632
           +GF P TMTY ++I   +  G    AL +   +  +GI  +++ Y + +   C     D+
Sbjct: 532 EGFVPTTMTYNSIINGFVKAGMMGSALAMYRQMCEKGITPNIVTYTSFIDGYCRTNCCDL 591

Query: 633 IEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRS 692
              ++  M  N + PD +  +   + +   G  + A+  L +L    L   V+      +
Sbjct: 592 AVKLLIYMRCNGIHPDIAAYNAFINMFCKQGNMSHALHFLVLLLKDGLTPNVTVYNSFVT 651

Query: 693 DFEDL-ILAEDSE 704
            +++L ++AE S+
Sbjct: 652 GYKNLKMMAEASK 664



 Score = 69.3 bits (168), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 77/338 (22%), Positives = 148/338 (43%), Gaps = 29/338 (8%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ +I  C     +    +L  QM   GL PS++ ++  I+ ++ ++   + + +  ++
Sbjct: 331 TYTVLIKGCDAEGMTDETYKLCRQMIEQGLLPSTYEFNLVIKGLLRNKQWEDAIALFDLV 390

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP-----FSAFLAACDT-- 407
               + P   T   L    SK  ++  A  L D++      KP      S  L  C+   
Sbjct: 391 VDTGV-PDVFTYGCLIHWLSKHHKVHEAVNLWDKMKE-AGVKPSIVTCHSLLLGYCEKGC 448

Query: 408 MDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM 466
           MD+   A+K++++M  K   P+  TY  L          Y +   F +        A+  
Sbjct: 449 MDE---ALKLYSEMPGKGFPPNEVTYTTLMK-------GYIKKKAFDKA------YALLN 492

Query: 467 DMARNNI---QHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQ 523
           +M +N +   ++++  + N L  +     + E+++ F        T TYN++++  V+A 
Sbjct: 493 EMHQNGVSCGEYTYNILINGLCMVDRVCEVDEMLKRFVSEGFVPTTMTYNSIINGFVKAG 552

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
               A+ +++QM   GI PN  TY   ID      C   A  L+  M  +G +P    Y 
Sbjct: 553 MMGSALAMYRQMCEKGITPNIVTYTSFIDGYCRTNCCDLAVKLLIYMRCNGIHPDIAAYN 612

Query: 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTIL 621
           A I +    G+   AL+ L L+  +G+  +V +YN+ +
Sbjct: 613 AFINMFCKQGNMSHALHFLVLLLKDGLTPNVTVYNSFV 650



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 72/161 (44%), Gaps = 7/161 (4%)

Query: 499 YFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIR 558
           Y+ D+K       Y+ V+ + V  +    A+ +F +M   G+ P+   Y I I     +R
Sbjct: 184 YYADAKM------YDVVMRACVVGRMHGDAVRLFDEMAGAGVKPDERVYAITITGLCKLR 237

Query: 559 CFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSL-EGIPHDVLLY 617
               A  ++  M   G  P+  TY +++ +L+  G  DEAL L D + L  G   DV L 
Sbjct: 238 DADRAVQVLGKMREAGLKPRDFTYNSVVDVLVKVGRMDEALRLKDQMLLATGKKMDVFLA 297

Query: 618 NTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
            T+++  C  G I     + ++  ++ V P   T   +  G
Sbjct: 298 TTLMQGYCLHGEIGKALDLFDEAVRDGVTPTNVTYTVLIKG 338



 Score = 46.6 bits (109), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 73/344 (21%), Positives = 133/344 (38%), Gaps = 14/344 (4%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL-S 370
           A +L  +M   G  P+  TY   ++  +  +       +L  M QN +   + T   L +
Sbjct: 452 ALKLYSEMPGKGFPPNEVTYTTLMKGYIKKKAFDKAYALLNEMHQNGVSCGEYTYNILIN 511

Query: 371 VECSKALELDLAEALLDQISRCTNPKP--FSAFLAACDTMDKPERAIKIFAKMRQK-LRP 427
             C      ++ E L   +S    P    +++ +           A+ ++ +M +K + P
Sbjct: 512 GLCMVDRVCEVDEMLKRFVSEGFVPTTMTYNSIINGFVKAGMMGSALAMYRQMCEKGITP 571

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL 487
           +I TY      +   N      ++  ++    R N I  D+A  N   + I+M    K  
Sbjct: 572 NIVTYTSFIDGYCRTNC----CDLAVKLLIYMRCNGIHPDIAAYN---AFINM--FCKQG 622

Query: 488 GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATY 547
                +  L+    D  TP     YN+ +      +    A + +  M    I  +   Y
Sbjct: 623 NMSHALHFLVLLLKDGLTP-NVTVYNSFVTGYKNLKMMAEASKFYYSMIKQRIAADTEIY 681

Query: 548 NIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSL 607
             +ID  S +     A  L S M+ +   P   T+TAL   L   GD D A  LLD ++ 
Sbjct: 682 TTLIDGFSKVGNVAFALELYSEMLANHNIPDDKTFTALTHGLCRSGDIDGAKRLLDDMTR 741

Query: 608 EGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
             +  + + YN ++      G++     + ++M  + V PD +T
Sbjct: 742 LDVCPNTVTYNMLINAHIRDGKLQEAFQLHDKMLSSGVVPDDTT 785



 Score = 43.9 bits (102), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 92/452 (20%), Positives = 171/452 (37%), Gaps = 79/452 (17%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYP-ILPVYNSFLGACAKLHSMVHANLCLD- 182
           Y  ++  L K   + EA NL   + E  G+ P I+  ++  LG C K         C+D 
Sbjct: 401 YGCLIHWLSKHHKVHEAVNLWDKMKEA-GVKPSIVTCHSLLLGYCEKG--------CMDE 451

Query: 183 --LMDSRMVGK----NEVTYTELLKLAVWQKNLSAVHEIW-EDYIKHYSLSIFSLRKFVW 235
              + S M GK    NEVTYT L+K  + +K     + +  E +    S   ++    + 
Sbjct: 452 ALKLYSEMPGKGFPPNEVTYTTLMKGYIKKKAFDKAYALLNEMHQNGVSCGEYTYNILIN 511

Query: 236 SFTRLRDLKSAYETLQHMVALAMM-GKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLR- 293
               +  +    E L+  V+   +   +  N    G +++  +   + +      K +  
Sbjct: 512 GLCMVDRVCEVDEMLKRFVSEGFVPTTMTYNSIINGFVKAGMMGSALAMYRQMCEKGITP 571

Query: 294 --WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVL 351
              +++  I    RT    LA +L++ M+  G+ P    Y+ FI        + + +  L
Sbjct: 572 NIVTYTSFIDGYCRTNCCDLAVKLLIYMRCNGIHPDIAAYNAFINMFCKQGNMSHALHFL 631

Query: 352 KIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKP 411
            ++ ++ L P                                N   +++F+     +   
Sbjct: 632 VLLLKDGLTP--------------------------------NVTVYNSFVTGYKNLKMM 659

Query: 412 ERAIKIFAKM-RQKLRPDIRTYELL---FSLFGNVNAPYEEGNMFSQVDSAKRINAIEMD 467
             A K +  M +Q++  D   Y  L   FS  GNV    E   ++S++            
Sbjct: 660 AEASKFYYSMIKQRIAADTEIYTTLIDGFSKVGNVAFALE---LYSEM------------ 704

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPL----GTPTYNTVLHSLVEAQ 523
           +A +NI     +   L   L   G I +  +   D  T L     T TYN ++++ +   
Sbjct: 705 LANHNIPDDK-TFTALTHGLCRSGDI-DGAKRLLDDMTRLDVCPNTVTYNMLINAHIRDG 762

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCS 555
           +   A ++  +M + G+ P+  TYNI    C+
Sbjct: 763 KLQEAFQLHDKMLSSGVVPDDTTYNIFPLTCN 794



 Score = 42.0 bits (97), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 28/113 (24%), Positives = 49/113 (43%)

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A+ +F +M+  G   +A  Y++++  C + R    A  L   M   G  P    Y   I 
Sbjct: 172 ALTLFDEMRCKGYYADAKMYDVVMRACVVGRMHGDAVRLFDEMAGAGVKPDERVYAITIT 231

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQM 640
            L    D D A+ +L  +   G+      YN+++    + GR+D    + +QM
Sbjct: 232 GLCKLRDADRAVQVLGKMREAGLKPRDFTYNSVVDVLVKVGRMDEALRLKDQM 284


>gi|168019209|ref|XP_001762137.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162686541|gb|EDQ72929.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 513

 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 83/392 (21%), Positives = 148/392 (37%), Gaps = 47/392 (11%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           F+ ++ A GRT+    AE     M+     P+  +++  + A      L     VL  M+
Sbjct: 104 FNMLMDAYGRTKQWTEAENTFHLMKKFQCLPTETSFNVLMAAYSRGGQLERAERVLHEMK 163

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAI 415
           ++N  P   T  T     +K+    LAE +  ++     P   + F    +   K   + 
Sbjct: 164 ESNCSPGLVTYNTYLEVLNKSGSWQLAEDVFREMQNRGVPPAVNTFTLMINIYGKAHHSA 223

Query: 416 K---IFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNN 472
           K   +F  MR+ L P       LF+    +NA   EGN                      
Sbjct: 224 KAEHLFQSMRKALCPPS-----LFTYTALINAHAREGNC--------------------- 257

Query: 473 IQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIF 532
                +  + +   L + G + ++              TYN +L +         A E+F
Sbjct: 258 -----VRAEEIFAELQSVGFVPDIY-------------TYNALLEAYSRGGHPAGAKEVF 299

Query: 533 KQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDY 592
           + M   G+  +  +YNI+ID          A A+   M + GF P   ++  L+   +  
Sbjct: 300 ETMLEAGVKADHVSYNILIDAFGRAGLISDAQAIYDSMKKVGFKPTMKSHILLLSAFVKA 359

Query: 593 GDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTC 652
           G   +A N +  +   G+  D  ++N++L      GR+D +E + E M  +  +PD  T 
Sbjct: 360 GRVTDAENFVRRLESMGVEPDTFMFNSLLGAYGNSGRMDKMESLYESMQGSVCKPDIITL 419

Query: 653 HFVFSGYVNCGFHNSAMEALQVLSMRMLCEEV 684
           + + + Y   G+   A E    L  +    +V
Sbjct: 420 NTLINVYAQGGYIERAEEIFNSLESKGFTPDV 451



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 82/442 (18%), Positives = 170/442 (38%), Gaps = 59/442 (13%)

Query: 124 CYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDL 183
           C+ ++M A  +     EA N  + + +++   P    +N  + A ++   +  A   L  
Sbjct: 103 CFNMLMDAYGRTKQWTEAENTFHLM-KKFQCLPTETSFNVLMAAYSRGGQLERAERVLHE 161

Query: 184 MDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDL 243
           M         VTY   L++     N S   ++ ED  +                 + R +
Sbjct: 162 MKESNCSPGLVTYNTYLEVL----NKSGSWQLAEDVFRE---------------MQNRGV 202

Query: 244 KSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHAC 303
             A  T   M+ +   GK + +  +E   +S R  +  P           ++++ +I+A 
Sbjct: 203 PPAVNTFTLMINI--YGKAHHSAKAEHLFQSMRKALCPPS---------LFTYTALINAH 251

Query: 304 GRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQD 363
            R  N   AE++  ++QS+G  P  +TY+  + A           EV + M +  +K   
Sbjct: 252 AREGNCVRAEEIFAELQSVGFVPDIYTYNALLEAYSRGGHPAGAKEVFETMLEAGVKADH 311

Query: 364 STIATLSVECSKALELDLAEALLDQISRCTNPKP--------FSAFLAACDTMDKPERAI 415
            +   L     +A  +  A+A+ D + +    KP         SAF+ A    D  E  +
Sbjct: 312 VSYNILIDAFGRAGLISDAQAIYDSMKK-VGFKPTMKSHILLLSAFVKAGRVTDA-ENFV 369

Query: 416 KIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQH 475
           +    M   + PD   +  L   +GN       G M        ++ ++   M  +  + 
Sbjct: 370 RRLESM--GVEPDTFMFNSLLGAYGN------SGRM-------DKMESLYESMQGSVCKP 414

Query: 476 SHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIF 532
             I++  L+      G I    + F   ++   TP   ++ +++ +  + +   + + ++
Sbjct: 415 DIITLNTLINVYAQGGYIERAEEIFNSLESKGFTPDVMSWTSLMGAYSKRKLYRKCVSVY 474

Query: 533 KQMKTCGIPPNAATYNIMIDCC 554
           ++M   G  P+ AT  +++  C
Sbjct: 475 QKMLIAGCIPDRATAKVLLSSC 496


>gi|356499433|ref|XP_003518545.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Glycine max]
          Length = 905

 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 92/360 (25%), Positives = 151/360 (41%), Gaps = 35/360 (9%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +F  +I   GR      A  L  +M   G  P++  Y   IR         +G ++ K M
Sbjct: 483 TFCSLIDGLGRHGKVNDAYMLYEKMLDSGQTPNAVVYTSLIRNFFKCGRKEDGHKIYKEM 542

Query: 355 QQNNLKPQDSTIATLSVECS-KALELDLAEALLDQI-SRCTNP--KPFSAFLAACDTMDK 410
                 P D  +    ++C  KA E++   AL ++I ++   P  + +S  +        
Sbjct: 543 MHRGCSP-DLMLLNNYMDCVFKAGEIEKGRALFEEIKAQGLTPDVRSYSILIHGLVKGGF 601

Query: 411 PERAIKIFAKMR-QKLRPDIRTYELLFSLF---GNVNAPYE----------------EGN 450
            +   K+F +M+ Q L  D R Y ++   F   G VN  Y+                 G+
Sbjct: 602 SKDTYKLFYEMKEQGLHLDTRAYNIVIDGFCKSGKVNKAYQLLEEMKTKGLQPTVVTYGS 661

Query: 451 MFSQVDSAKRINAIEM---DMARNNIQHSHISMKNLLKALGAEGMIRE----LIQYFCDS 503
           +   +    R++   M   +     +  + +   +L+   G  G I E    L +     
Sbjct: 662 VIDGLAKIDRLDEAYMLFEEAKSKAVDLNVVVYSSLIDGFGKVGRIDEAYLILEELMQKG 721

Query: 504 KTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSA 563
            TP  T T+N +L +LV+A+E   A+  F+ MK    PPN  TY+IM++    +R F  A
Sbjct: 722 LTP-NTYTWNCLLDALVKAEEIDEALVCFQNMKNLKCPPNEVTYSIMVNGLCKVRKFNKA 780

Query: 564 SALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLD-LVSLEGIPHDVLLYNTILK 622
                 M + G  P T+TYT +I  L   G+  EA +L +   S  GIP D   YN +++
Sbjct: 781 FVFWQEMQKQGLKPNTITYTTMISGLARVGNVLEAKDLFERFKSSGGIP-DSACYNAMIE 839



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 95/435 (21%), Positives = 169/435 (38%), Gaps = 67/435 (15%)

Query: 304 GRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQD 363
            RT+N    EQ++ +M   G  PS++T    + + V  R LR    V++ M++   +P  
Sbjct: 143 ARTRNLEYLEQILEEMSMAGFGPSNNTCIEMVASFVKSRKLREAFGVIETMRKFKFRPAY 202

Query: 364 STIATLSVECSKALELDLAEALLDQISR--------------CTNPKP--FSAFLAACDT 407
           S   TL    S A E D    LL Q+                C   +     A L+  D 
Sbjct: 203 SAYTTLIGALSAAHEADPMLTLLRQMQEIGYEVTVHLFTTLICVFAREGRVDAALSLLDE 262

Query: 408 M----------------------DKPERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNA 444
           M                       K + A K F +++ Q L PD  T+  +  +      
Sbjct: 263 MKSNSFNADLVLYNVCIDCFGKVGKVDMAWKFFHELKSQGLVPDDVTFTSMIGVLCKAER 322

Query: 445 PYEEGNMFSQVDSAKRINAI----EMDMARNNIQH------------------SHISMKN 482
             E   +F ++DS K +  +     M M   ++                    S I+   
Sbjct: 323 VDEAVELFEELDSNKSVPCVYAYNTMIMGYGSVGKFNEAYSLLERQKRKGCIPSVIAYNC 382

Query: 483 LLKALGAEGMIRELIQYFCDSKTPLGT--PTYNTVLHSLVEAQESHRAMEIFKQMKTCGI 540
           +L  LG +G + E ++     K        +YN ++  L +A E   A+++   MK  G+
Sbjct: 383 ILTCLGRKGKVEEALRILEAMKMDAAPNLTSYNILIDMLCKAGELEAALKVQDSMKEAGL 442

Query: 541 PPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALN 600
            PN  T NIMID     +    A ++   +      P ++T+ +LI  L  +G  ++A  
Sbjct: 443 FPNIITVNIMIDRLCKAQRLDEACSIFLGLDHKVCTPDSVTFCSLIDGLGRHGKVNDAYM 502

Query: 601 LLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYV 660
           L + +   G   + ++Y ++++   + GR +    I ++M      PD      + + Y+
Sbjct: 503 LYEKMLDSGQTPNAVVYTSLIRNFFKCGRKEDGHKIYKEMMHRGCSPD----LMLLNNYM 558

Query: 661 NCGFHNSAMEALQVL 675
           +C F    +E  + L
Sbjct: 559 DCVFKAGEIEKGRAL 573



 Score = 69.3 bits (168), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 72/387 (18%), Positives = 150/387 (38%), Gaps = 28/387 (7%)

Query: 300 IHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNL 359
           I   G+     +A +   +++S GL P   T+   I  +     +   +E+ + +  N  
Sbjct: 279 IDCFGKVGKVDMAWKFFHELKSQGLVPDDVTFTSMIGVLCKAERVDEAVELFEELDSNKS 338

Query: 360 KPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKPERAIK 416
            P      T+ +      + + A +LL++  R     +   ++  L       K E A++
Sbjct: 339 VPCVYAYNTMIMGYGSVGKFNEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALR 398

Query: 417 IFAKMRQKLRPDIRTYELLFSLF---GNVNAPYE------EGNMFSQVDS---------- 457
           I   M+    P++ +Y +L  +    G + A  +      E  +F  + +          
Sbjct: 399 ILEAMKMDAAPNLTSYNILIDMLCKAGELEAALKVQDSMKEAGLFPNIITVNIMIDRLCK 458

Query: 458 AKRIN---AIEMDMARNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPT 511
           A+R++   +I + +         ++  +L+  LG  G + +   L +   DS        
Sbjct: 459 AQRLDEACSIFLGLDHKVCTPDSVTFCSLIDGLGRHGKVNDAYMLYEKMLDSGQTPNAVV 518

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           Y +++ +  +        +I+K+M   G  P+    N  +DC       +   AL   + 
Sbjct: 519 YTSLIRNFFKCGRKEDGHKIYKEMMHRGCSPDLMLLNNYMDCVFKAGEIEKGRALFEEIK 578

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
             G  P   +Y+ LI  L+  G   +   L   +  +G+  D   YN ++   C+ G+++
Sbjct: 579 AQGLTPDVRSYSILIHGLVKGGFSKDTYKLFYEMKEQGLHLDTRAYNIVIDGFCKSGKVN 638

Query: 632 VIEFIIEQMHQNKVQPDPSTCHFVFSG 658
               ++E+M    +QP   T   V  G
Sbjct: 639 KAYQLLEEMKTKGLQPTVVTYGSVIDG 665



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 123/606 (20%), Positives = 235/606 (38%), Gaps = 72/606 (11%)

Query: 98  ARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPI 157
           AR+ +  ++ +    M     G +N   + M+ +  K   L EA  +I  +  ++   P 
Sbjct: 143 ARTRNLEYLEQILEEMSMAGFGPSNNTCIEMVASFVKSRKLREAFGVIETM-RKFKFRPA 201

Query: 158 LPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVT---YTELLKLAVWQKNLSAVHE 214
              Y + +GA +  H    A+  L L+        EVT   +T L+ +   +  + A   
Sbjct: 202 YSAYTTLIGALSAAH---EADPMLTLLRQMQEIGYEVTVHLFTTLICVFAREGRVDAALS 258

Query: 215 IWEDYIKH--------YSLSIFSLRK-----FVWSFTRLRDLKSAYETLQHMVALAMMGK 261
           + ++   +        Y++ I    K       W F    +LKS       +   +M+G 
Sbjct: 259 LLDEMKSNSFNADLVLYNVCIDCFGKVGKVDMAWKF--FHELKSQGLVPDDVTFTSMIGV 316

Query: 262 LYINRTSEGRLRSSRLDIPIPL-------NALPVMKVLRWSFSDVIHACGRTQNSGLAEQ 314
           L          ++ R+D  + L        ++P +    ++++ +I   G       A  
Sbjct: 317 L---------CKAERVDEAVELFEELDSNKSVPCV----YAYNTMIMGYGSVGKFNEAYS 363

Query: 315 LMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECS 374
           L+ + +  G  PS   Y+  +  +     +   + +L+ M+ +      S    + + C 
Sbjct: 364 LLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRILEAMKMDAAPNLTSYNILIDMLC- 422

Query: 375 KALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPER---AIKIFAKMRQKL-RPDIR 430
           KA EL+ A  + D +                D + K +R   A  IF  +  K+  PD  
Sbjct: 423 KAGELEAALKVQDSMKEAGLFPNIITVNIMIDRLCKAQRLDEACSIFLGLDHKVCTPDSV 482

Query: 431 TYELLFSLFGNVNAPYEEGNMFSQ-VDSAKRINAI-EMDMARN---------------NI 473
           T+  L    G      +   ++ + +DS +  NA+    + RN                +
Sbjct: 483 TFCSLIDGLGRHGKVNDAYMLYEKMLDSGQTPNAVVYTSLIRNFFKCGRKEDGHKIYKEM 542

Query: 474 QHSHIS-----MKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQES 525
            H   S     + N +  +   G I +    F + K    TP   +Y+ ++H LV+   S
Sbjct: 543 MHRGCSPDLMLLNNYMDCVFKAGEIEKGRALFEEIKAQGLTPDVRSYSILIHGLVKGGFS 602

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
               ++F +MK  G+  +   YNI+ID          A  L+  M   G  P  +TY ++
Sbjct: 603 KDTYKLFYEMKEQGLHLDTRAYNIVIDGFCKSGKVNKAYQLLEEMKTKGLQPTVVTYGSV 662

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           I  L      DEA  L +    + +  +V++Y++++    + GRID    I+E++ Q  +
Sbjct: 663 IDGLAKIDRLDEAYMLFEEAKSKAVDLNVVVYSSLIDGFGKVGRIDEAYLILEELMQKGL 722

Query: 646 QPDPST 651
            P+  T
Sbjct: 723 TPNTYT 728



 Score = 52.8 bits (125), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 101/517 (19%), Positives = 194/517 (37%), Gaps = 61/517 (11%)

Query: 106 VMETWRMME--EKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNS 163
           V E  R++E  + +   N   Y +++  LCK G LE A  +   + E  G++P +   N 
Sbjct: 393 VEEALRILEAMKMDAAPNLTSYNILIDMLCKAGELEAALKVQDSMKEA-GLFPNIITVNI 451

Query: 164 FLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH- 222
            +    K   +  A      +D ++   + VT+  L+        ++  + ++E  +   
Sbjct: 452 MIDRLCKAQRLDEACSIFLGLDHKVCTPDSVTFCSLIDGLGRHGKVNDAYMLYEKMLDSG 511

Query: 223 ---YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA---LAMMGKLYINRTSEGRLRSSR 276
               ++   SL +  +   R  D    Y+ + H      L ++          G +   R
Sbjct: 512 QTPNAVVYTSLIRNFFKCGRKEDGHKIYKEMMHRGCSPDLMLLNNYMDCVFKAGEIEKGR 571

Query: 277 LDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIR 336
                 + A  +   +R S+S +IH   +   S    +L  +M+  GL   +  Y+  I 
Sbjct: 572 ALFE-EIKAQGLTPDVR-SYSILIHGLVKGGFSKDTYKLFYEMKEQGLHLDTRAYNIVID 629

Query: 337 AIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT--- 393
                  +    ++L+ M+   L+P   T  ++    +K   LD A  L ++        
Sbjct: 630 GFCKSGKVNKAYQLLEEMKTKGLQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKAVDL 689

Query: 394 NPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMF 452
           N   +S+ +     + + + A  I  ++ QK L P+  T+  L                 
Sbjct: 690 NVVVYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNTYTWNCLLDAL------------- 736

Query: 453 SQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTY 512
                   + A E+D A    Q+    MKNL                    K P    TY
Sbjct: 737 --------VKAEEIDEALVCFQN----MKNL--------------------KCPPNEVTY 764

Query: 513 NTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVR 572
           + +++ L + ++ ++A   +++M+  G+ PN  TY  MI   + +     A  L      
Sbjct: 765 SIMVNGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTTMISGLARVGNVLEAKDLFERFKS 824

Query: 573 DGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEG 609
            G  P +  Y A+I+ L +     +A  L +   L+G
Sbjct: 825 SGGIPDSACYNAMIEGLSNANKAMDAYILFEETRLKG 861



 Score = 41.6 bits (96), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 69/155 (44%), Gaps = 8/155 (5%)

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A+ +  +MK+     +   YN+ IDC   +     A      +   G  P  +T+T++I 
Sbjct: 256 ALSLLDEMKSNSFNADLVLYNVCIDCFGKVGKVDMAWKFFHELKSQGLVPDDVTFTSMIG 315

Query: 588 ILLDYGDFDEALNLL-DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
           +L      DEA+ L  +L S + +P  V  YNT++      G+ +    ++E+  +    
Sbjct: 316 VLCKAERVDEAVELFEELDSNKSVPC-VYAYNTMIMGYGSVGKFNEAYSLLERQKRKGCI 374

Query: 647 PDPSTCHFVFSGYVNC-GFHNSAMEALQVL-SMRM 679
           P        ++  + C G      EAL++L +M+M
Sbjct: 375 PSV----IAYNCILTCLGRKGKVEEALRILEAMKM 405


>gi|224107129|ref|XP_002314384.1| predicted protein [Populus trichocarpa]
 gi|222863424|gb|EEF00555.1| predicted protein [Populus trichocarpa]
          Length = 764

 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 81/387 (20%), Positives = 159/387 (41%), Gaps = 28/387 (7%)

Query: 300 IHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNL 359
           I   G+     +A +   +M++ GL P   TY   +  +     L   +E+ + M+QN  
Sbjct: 138 IDCFGKVGKVDMAWKFFHEMKANGLVPDDVTYTSMMGVLCKANRLDEAVEIFEQMEQNRQ 197

Query: 360 KPQDSTIATLSVECSKALELDLAEALLD-QISRCTNPK--PFSAFLAACDTMDKPERAIK 416
            P      T+ +    A + D A +LL+ Q ++   P    ++  L       K ++A++
Sbjct: 198 VPCAYAYNTMIMGYGSAGKFDEAYSLLERQRAKGCIPSVVAYNCILTCLGKKGKTDKALR 257

Query: 417 IFAKMRQKLRPDIRTYELLFSLF---GNVNAPY------EEGNMFSQVDS---------- 457
           IF +M++   P++ TY ++  +    GNV A +      +E  +F  V +          
Sbjct: 258 IFEEMKRDAMPNLPTYNIIIGMLCKAGNVEAAFKVRDAMKEAGLFPNVRTINIMIDRLCK 317

Query: 458 AKRIN---AIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYF---CDSKTPLGTPT 511
           A++++   +I   M          +  +L+  LG +G + +  + +    D+        
Sbjct: 318 AQKLDEACSIFEGMDYKVCSPDGATFCSLIDGLGKQGRVDDAYRIYERMLDADQIPNVVV 377

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           Y +++ +  +        +++K+M   G  P+    N  +DC       +   AL   + 
Sbjct: 378 YTSLIRNFFKCDRKEDGHKMYKEMMRSGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIK 437

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
             GF P T +Y+ LI  L+  G   E   L   +  +G   D   YNT++   C+ G+++
Sbjct: 438 ARGFLPDTRSYSILIHSLVKAGFARETYELYYAMKDQGCVLDTRAYNTVIDGFCKSGKVN 497

Query: 632 VIEFIIEQMHQNKVQPDPSTCHFVFSG 658
               ++E+M      P   T   V  G
Sbjct: 498 KAYQLLEEMKTMGHHPTVVTYGSVVDG 524



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 75/354 (21%), Positives = 141/354 (39%), Gaps = 21/354 (5%)

Query: 305 RTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDS 364
           RT+N    EQ++ +M   G  P+++T    + + V  R L    ++L++M+    +P  S
Sbjct: 3   RTRNFDYLEQILGEMSIAGFGPTNYTCVELVASCVKSRKLIEAFDLLQMMRHFKFRPAFS 62

Query: 365 TIATLSVECSKALELDLAEALLDQISRC---TNPKPFSAFLAACDTMDKPERAIKIFAKM 421
              TL    S+  E D   AL +Q+       N    +  +       + + A+ +  +M
Sbjct: 63  AYTTLIGALSEVGESDRMLALFNQMQELGYEVNVHLLTTLIRVFSREGRVDAALSLLDEM 122

Query: 422 RQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISM 480
           +      DI  Y +    FG V           +VD A +      +M  N +    ++ 
Sbjct: 123 KSNTFDADIVLYNVCIDCFGKV----------GKVDMAWKFF---HEMKANGLVPDDVTY 169

Query: 481 KNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKT 537
            +++  L     + E ++ F   +     P    YNT++     A +   A  + ++ + 
Sbjct: 170 TSMMGVLCKANRLDEAVEIFEQMEQNRQVPCAYAYNTMIMGYGSAGKFDEAYSLLERQRA 229

Query: 538 CGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDE 597
            G  P+   YN ++ C         A  +   M RD   P   TY  +I +L   G+ + 
Sbjct: 230 KGCIPSVVAYNCILTCLGKKGKTDKALRIFEEMKRDAM-PNLPTYNIIIGMLCKAGNVEA 288

Query: 598 ALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
           A  + D +   G+  +V   N ++ + C+  ++D    I E M      PD +T
Sbjct: 289 AFKVRDAMKEAGLFPNVRTINIMIDRLCKAQKLDEACSIFEGMDYKVCSPDGAT 342



 Score = 72.4 bits (176), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 117/551 (21%), Positives = 214/551 (38%), Gaps = 39/551 (7%)

Query: 109 TWRMMEE-KEIGL--NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFL 165
            W+   E K  GL  ++  Y  MM  LCK   L+EA  +   + +   + P    YN+ +
Sbjct: 150 AWKFFHEMKANGLVPDDVTYTSMMGVLCKANRLDEAVEIFEQMEQNRQV-PCAYAYNTMI 208

Query: 166 GACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSL 225
                      A   L+   ++    + V Y  +L     +        I+E+  +    
Sbjct: 209 MGYGSAGKFDEAYSLLERQRAKGCIPSVVAYNCILTCLGKKGKTDKALRIFEEMKRDAMP 268

Query: 226 SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKL-YINRTSEGRLRSSRLDIPIPLN 284
           ++ +    +    +  ++++A++    M    +   +  IN   +   ++ +LD    + 
Sbjct: 269 NLPTYNIIIGMLCKAGNVEAAFKVRDAMKEAGLFPNVRTINIMIDRLCKAQKLDEACSIF 328

Query: 285 ALPVMKVLR---WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSD 341
                KV      +F  +I   G+      A ++  +M      P+   Y   IR     
Sbjct: 329 EGMDYKVCSPDGATFCSLIDGLGKQGRVDDAYRIYERMLDADQIPNVVVYTSLIRNFFKC 388

Query: 342 RGLRNGMEVLKIMQQNNLKPQDSTIATLSVECS-KALELDLAEALLDQI-SRCTNP--KP 397
               +G ++ K M ++   P D  +    ++C  KA E +   AL ++I +R   P  + 
Sbjct: 389 DRKEDGHKMYKEMMRSGCSP-DLMLLNTYMDCVFKAGETEKGRALFEEIKARGFLPDTRS 447

Query: 398 FSAFLAACDTMDKPERAIKIFAKMR-QKLRPDIRTYELLFSLF---GNVNAPY---EEGN 450
           +S  + +           +++  M+ Q    D R Y  +   F   G VN  Y   EE  
Sbjct: 448 YSILIHSLVKAGFARETYELYYAMKDQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMK 507

Query: 451 MF----------SQVDSAKRINAIEM------DMARNNIQHSHISMKNLLKALGAEGMIR 494
                       S VD   +I+ ++       +   N I+ + +   +L+   G  G + 
Sbjct: 508 TMGHHPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSNGIELNQVIYSSLIDGFGKVGRVD 567

Query: 495 ELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI 551
           E      +      TP   T+N +L  LV+A+E + A+  F+ MK     PN  TY I+I
Sbjct: 568 EAYLVMEEMMQKGLTPNVYTWNCLLDGLVKAEEINEALVCFQSMKDLKCTPNQITYCILI 627

Query: 552 DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIP 611
           +    +R F  A      M + G  P T+TYTA+I  L   G+  +A +L +     G  
Sbjct: 628 NGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTAMISGLAKSGNVAQASSLFERFRASGGI 687

Query: 612 HDVLLYNTILK 622
            D   YN +++
Sbjct: 688 PDSASYNAMIE 698



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 77/355 (21%), Positives = 145/355 (40%), Gaps = 20/355 (5%)

Query: 326 PSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEAL 385
           P+  TY+  I  +     +    +V   M++  L P   TI  +     KA +LD A ++
Sbjct: 268 PNLPTYNIIIGMLCKAGNVEAAFKVRDAMKEAGLFPNVRTINIMIDRLCKAQKLDEACSI 327

Query: 386 LDQISRCTNPKPFSAFLAACDTMDKPER---AIKIFAKMRQKLR-PDIRTYELLFSLFGN 441
            + +         + F +  D + K  R   A +I+ +M    + P++  Y    SL  N
Sbjct: 328 FEGMDYKVCSPDGATFCSLIDGLGKQGRVDDAYRIYERMLDADQIPNVVVYT---SLIRN 384

Query: 442 VNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFC 501
                     F + D  +  + +  +M R+      + +   +  +   G   +    F 
Sbjct: 385 ----------FFKCDRKEDGHKMYKEMMRSGCSPDLMLLNTYMDCVFKAGETEKGRALFE 434

Query: 502 DSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIR 558
           + K     P   +Y+ ++HSLV+A  +    E++  MK  G   +   YN +ID      
Sbjct: 435 EIKARGFLPDTRSYSILIHSLVKAGFARETYELYYAMKDQGCVLDTRAYNTVIDGFCKSG 494

Query: 559 CFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYN 618
               A  L+  M   G +P  +TY +++  L      DEA  L +     GI  + ++Y+
Sbjct: 495 KVNKAYQLLEEMKTMGHHPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSNGIELNQVIYS 554

Query: 619 TILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           +++    + GR+D    ++E+M Q  + P+  T + +  G V     N A+   Q
Sbjct: 555 SLIDGFGKVGRVDEAYLVMEEMMQKGLTPNVYTWNCLLDGLVKAEEINEALVCFQ 609



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 96/490 (19%), Positives = 193/490 (39%), Gaps = 48/490 (9%)

Query: 192 NEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSI-FSLRKFVWSFTRLRDLKSAYETL 250
           ++VTYT ++ +      L    EI+E   ++  +   ++    +  +        AY  L
Sbjct: 165 DDVTYTSMMGVLCKANRLDEAVEIFEQMEQNRQVPCAYAYNTMIMGYGSAGKFDEAYSLL 224

Query: 251 QHMVA-------------LAMMGKLYINRTSEGRL-RSSRLDIPIPLNALPVMKVLRWSF 296
           +   A             L  +GK       +G+  ++ R+   +  +A+P +     ++
Sbjct: 225 ERQRAKGCIPSVVAYNCILTCLGK-------KGKTDKALRIFEEMKRDAMPNLP----TY 273

Query: 297 SDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQ 356
           + +I    +  N   A ++   M+  GL P+  T +  I  +   + L     + + M  
Sbjct: 274 NIIIGMLCKAGNVEAAFKVRDAMKEAGLFPNVRTINIMIDRLCKAQKLDEACSIFEGMDY 333

Query: 357 NNLKPQDSTIATLSVECSKALELDLA----EALLDQISRCTNPKPFSAFLAACDTMDKPE 412
               P  +T  +L     K   +D A    E +LD   +  N   +++ +      D+ E
Sbjct: 334 KVCSPDGATFCSLIDGLGKQGRVDDAYRIYERMLDA-DQIPNVVVYTSLIRNFFKCDRKE 392

Query: 413 RAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471
              K++ +M R    PD+    +L + + +         +F   ++ K     E   AR 
Sbjct: 393 DGHKMYKEMMRSGCSPDL----MLLNTYMDC--------VFKAGETEKGRALFEEIKARG 440

Query: 472 NIQHSHISMKNLLKALGAEGMIRELIQYFC---DSKTPLGTPTYNTVLHSLVEAQESHRA 528
            +  +  S   L+ +L   G  RE  + +    D    L T  YNTV+    ++ + ++A
Sbjct: 441 FLPDTR-SYSILIHSLVKAGFARETYELYYAMKDQGCVLDTRAYNTVIDGFCKSGKVNKA 499

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
            ++ ++MKT G  P   TY  ++D  + I     A  L      +G     + Y++LI  
Sbjct: 500 YQLLEEMKTMGHHPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSNGIELNQVIYSSLIDG 559

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
               G  DEA  +++ +  +G+  +V  +N +L    +   I+      + M   K  P+
Sbjct: 560 FGKVGRVDEAYLVMEEMMQKGLTPNVYTWNCLLDGLVKAEEINEALVCFQSMKDLKCTPN 619

Query: 649 PSTCHFVFSG 658
             T   + +G
Sbjct: 620 QITYCILING 629



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 67/163 (41%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
            Y T++ +L E  ES R + +F QM+  G   N      +I   S      +A +L+  M
Sbjct: 63  AYTTLIGALSEVGESDRMLALFNQMQELGYEVNVHLLTTLIRVFSREGRVDAALSLLDEM 122

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
             + F    + Y   I      G  D A      +   G+  D + Y +++   C+  R+
Sbjct: 123 KSNTFDADIVLYNVCIDCFGKVGKVDMAWKFFHEMKANGLVPDDVTYTSMMGVLCKANRL 182

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           D    I EQM QN+  P     + +  GY + G  + A   L+
Sbjct: 183 DEAVEIFEQMEQNRQVPCAYAYNTMIMGYGSAGKFDEAYSLLE 225



 Score = 48.1 bits (113), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 94/497 (18%), Positives = 187/497 (37%), Gaps = 61/497 (12%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y +++  LCK G +E A  +   + E  G++P +   N  +    K   +  A    + M
Sbjct: 273 YNIIIGMLCKAGNVEAAFKVRDAMKEA-GLFPNVRTINIMIDRLCKAQKLDEACSIFEGM 331

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWE-----DYIKHYSLSIFSLRKFVWSFTR 239
           D ++   +  T+  L+     Q  +   + I+E     D I +  +    +R F +   R
Sbjct: 332 DYKVCSPDGATFCSLIDGLGKQGRVDDAYRIYERMLDADQIPNVVVYTSLIRNF-FKCDR 390

Query: 240 LRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDV 299
             D    Y+ +                     +RS            P + +L  ++ D 
Sbjct: 391 KEDGHKMYKEM---------------------MRSG---------CSPDLMLLN-TYMDC 419

Query: 300 IHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNL 359
           +   G T+       L  ++++ G  P + +Y   I ++V     R   E+   M+    
Sbjct: 420 VFKAGETEK---GRALFEEIKARGFLPDTRSYSILIHSLVKAGFARETYELYYAMKDQGC 476

Query: 360 KPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFA 419
                   T+     K+ +++ A  LL+++    +      + +  D + K +R  + + 
Sbjct: 477 VLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTMGHHPTVVTYGSVVDGLAKIDRLDEAYM 536

Query: 420 KMRQKLRPDIRTYELLFSL----FGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQH 475
              +     I   ++++S     FG V           +VD A  +     +M +  +  
Sbjct: 537 LFEEAKSNGIELNQVIYSSLIDGFGKV----------GRVDEAYLVME---EMMQKGLTP 583

Query: 476 SHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIF 532
           +  +   LL  L     I E +  F   K    TP   TY  +++ L + ++ ++A   +
Sbjct: 584 NVYTWNCLLDGLVKAEEINEALVCFQSMKDLKCTPNQITYCILINGLCKVRKFNKAFVFW 643

Query: 533 KQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDY 592
           ++M+  G+ PN  TY  MI   +       AS+L       G  P + +Y A+I+ L   
Sbjct: 644 QEMQKQGLKPNTITYTAMISGLAKSGNVAQASSLFERFRASGGIPDSASYNAMIEGLSIA 703

Query: 593 GDFDEALNLLDLVSLEG 609
               +A  L +   L+G
Sbjct: 704 NRALDAYQLFEETRLKG 720


>gi|15237384|ref|NP_197167.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171647|sp|Q9FMD3.1|PP389_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g16640, mitochondrial; Flags: Precursor
 gi|10176973|dbj|BAB10191.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737318|dbj|BAF00605.1| hypothetical protein [Arabidopsis thaliana]
 gi|332004938|gb|AED92321.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 504

 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 74/338 (21%), Positives = 150/338 (44%), Gaps = 20/338 (5%)

Query: 318 QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL-SVECSKA 376
           QM  +G +P+   Y+  I  +   + + N +++L  M+++ + P   T  +L S  CS  
Sbjct: 176 QMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSG 235

Query: 377 LELDLAEALLDQISRCTNPK--PFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYE 433
              D    +     R   P    F+A + AC    +   A + + +M R+ L PDI TY 
Sbjct: 236 RWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYS 295

Query: 434 LLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMI 493
           LL  ++G          M+S++D A+ +      M         ++   L+        +
Sbjct: 296 LL--IYGLC--------MYSRLDEAEEMFGF---MVSKGCFPDVVTYSILINGYCKSKKV 342

Query: 494 RELIQYFCD---SKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIM 550
              ++ FC+         T TY  ++     A + + A EIF++M  CG+ PN  TYN++
Sbjct: 343 EHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVL 402

Query: 551 IDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGI 610
           +         + A  +++ M ++G     +TY  +I+ +   G+  +A ++   ++ +G+
Sbjct: 403 LHGLCDNGKIEKALVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGL 462

Query: 611 PHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
             D+  Y T++    +KG     + +  +M ++ + P+
Sbjct: 463 MPDIWTYTTMMLGLYKKGLRREADALFRKMKEDGILPN 500



 Score = 69.3 bits (168), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 70/148 (47%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           T+ ++L+        + A+ +F QM   G  PN   YN +ID     +   +A  L++ M
Sbjct: 153 TFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRM 212

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
            +DG  P  +TY +LI  L   G + +A  ++  ++   I  DV  +N ++    ++GR+
Sbjct: 213 EKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRV 272

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
              E   E+M +  + PD  T   +  G
Sbjct: 273 SEAEEFYEEMIRRSLDPDIVTYSLLIYG 300



 Score = 65.9 bits (159), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 72/149 (48%), Gaps = 2/149 (1%)

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID-CCSIIRCFKSASALVSMM 570
           YNT++  L ++++   A+++  +M+  GI P+  TYN +I   CS  R +  A+ +VS M
Sbjct: 189 YNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGR-WSDATRMVSCM 247

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
            +   YP   T+ ALI   +  G   EA    + +    +  D++ Y+ ++   C   R+
Sbjct: 248 TKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRL 307

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
           D  E +   M      PD  T   + +GY
Sbjct: 308 DEAEEMFGFMVSKGCFPDVVTYSILINGY 336



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 78/377 (20%), Positives = 146/377 (38%), Gaps = 24/377 (6%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           FS ++ A  + +   +   L  QMQ LG+  +  T +  +        L   +  L  M 
Sbjct: 84  FSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSFLGKMI 143

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPER-- 413
           +   +P   T  +L     +   +  A  + DQ+           +    D + K ++  
Sbjct: 144 KLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVD 203

Query: 414 -AIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMD--MA 469
            A+ +  +M +  + PD+ TY  L S                   S +  +A  M   M 
Sbjct: 204 NALDLLNRMEKDGIGPDVVTYNSLIS---------------GLCSSGRWSDATRMVSCMT 248

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESH 526
           +  I     +   L+ A   EG + E  +++ +       P   TY+ +++ L       
Sbjct: 249 KREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLD 308

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
            A E+F  M + G  P+  TY+I+I+     +  +    L   M + G    T+TYT LI
Sbjct: 309 EAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILI 368

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
           +     G  + A  +   +   G+  +++ YN +L   C+ G+I+    I+  M +N + 
Sbjct: 369 QGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVILADMQKNGMD 428

Query: 647 PDPSTCHFVFSGYVNCG 663
            D  T + +  G    G
Sbjct: 429 ADIVTYNIIIRGMCKAG 445



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 78/347 (22%), Positives = 133/347 (38%), Gaps = 31/347 (8%)

Query: 344 LRNGMEVLKI---------MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTN 394
           LRNG+  +K+         M Q    P  +  + L    SK  + D+   L +Q+     
Sbjct: 53  LRNGIRFMKLDDSLDLFFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGI 112

Query: 395 PKPFSAFLAACDTM-------DKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPY 446
           P      L  C+ +        +   A+    KM +    P I T+  L + F   +  Y
Sbjct: 113 PHN----LCTCNILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVY 168

Query: 447 EEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTP 506
           +   MF Q+        + M    N + ++ I +  L K+   +  +  L +   D   P
Sbjct: 169 DALYMFDQM--------VGMGYKPNVVIYNTI-IDGLCKSKQVDNALDLLNRMEKDGIGP 219

Query: 507 LGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASAL 566
               TYN+++  L  +     A  +   M    I P+  T+N +ID C        A   
Sbjct: 220 -DVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEF 278

Query: 567 VSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE 626
              M+R    P  +TY+ LI  L  Y   DEA  +   +  +G   DV+ Y+ ++   C+
Sbjct: 279 YEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCK 338

Query: 627 KGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
             +++    +  +M Q  V  +  T   +  GY   G  N A E  +
Sbjct: 339 SKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFR 385



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/197 (23%), Positives = 86/197 (43%), Gaps = 6/197 (3%)

Query: 495 ELIQYFCDSKTPLGTP----TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIM 550
           +++ Y  +    LG P    T N +L+      +   A+    +M   G  P+  T+  +
Sbjct: 98  DVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSL 157

Query: 551 IDC-CSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEG 609
           ++  C   R +  A  +   MV  G+ P  + Y  +I  L      D AL+LL+ +  +G
Sbjct: 158 LNGFCRGDRVY-DALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDG 216

Query: 610 IPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAM 669
           I  DV+ YN+++   C  GR      ++  M + ++ PD  T + +    V  G  + A 
Sbjct: 217 IGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAE 276

Query: 670 EALQVLSMRMLCEEVST 686
           E  + +  R L  ++ T
Sbjct: 277 EFYEEMIRRSLDPDIVT 293



 Score = 49.7 bits (117), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 85/396 (21%), Positives = 158/396 (39%), Gaps = 34/396 (8%)

Query: 2   YRPLLRT--RFQLIADSFCKSKFHKHERRNVANKLELSRTLT--TTMGLNEESISKATQM 57
           YR +LR   RF  + DS     FH  + R + +  + SR L+  + M   +  I    QM
Sbjct: 49  YREMLRNGIRFMKLDDSL-DLFFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQM 107

Query: 58  Q-------------IVDALCR-GERSRASHLLLNLGHAHHSLGADDFFHILN-YCA--RS 100
           Q             +++  CR  + S A   L  +    H      F  +LN +C   R 
Sbjct: 108 QMLGIPHNLCTCNILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRV 167

Query: 101 PDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPV 160
            D L++ +    M  K    N   Y  ++  LCK   ++ A +L+  + E+ GI P +  
Sbjct: 168 YDALYMFDQMVGMGYKP---NVVIYNTIIDGLCKSKQVDNALDLLNRM-EKDGIGPDVVT 223

Query: 161 YNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI 220
           YNS +           A   +  M  R +  +  T+  L+   V +  +S   E +E+ I
Sbjct: 224 YNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMI 283

Query: 221 KH-YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRT-SEGRLRSSRLD 278
           +      I +    ++       L  A E    MV+      +        G  +S +++
Sbjct: 284 RRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVE 343

Query: 279 IPIPLNA-LPVMKVLR--WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFI 335
             + L   +    V+R   +++ +I    R     +AE++  +M   G+ P+  TY+  +
Sbjct: 344 HGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLL 403

Query: 336 RAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
             +  +  +   + +L  MQ+N +   D+ I T ++
Sbjct: 404 HGLCDNGKIEKALVILADMQKNGM---DADIVTYNI 436


>gi|168055632|ref|XP_001779828.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668740|gb|EDQ55341.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 730

 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 109/499 (21%), Positives = 195/499 (39%), Gaps = 38/499 (7%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y  ++    K G+  EA+N++  + E  G  P +  YN  L A  +      A    D M
Sbjct: 226 YNALLDVYGKAGWYNEAANVLKEM-ESAGCLPNIVTYNELLSAFGRAGLCNAAAEMKDSM 284

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDY-IKHYSLSIFSLRKFVWSFTRLRDL 243
            S+ +  +  TYT LL        +    EI+      + + + F+    +    + ++ 
Sbjct: 285 VSKGIEPDVFTYTSLLSAYSRAGKVEQAMEIYNQMRTSNCTPNSFTFNALIGMHGKNKNF 344

Query: 244 KSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVL-----RWSFSD 298
                  + M A  +   +    +  G    + +   + L     MK       + +F+ 
Sbjct: 345 SEMMVIFEDMQACGVEPDIVTWNSLLGAFGKNGMYSEV-LKVFRGMKKAGFEPDKATFNI 403

Query: 299 VIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNN 358
           +I A GR  +S  A  +   M   G  P   T++  + A+  +    +   +L  + +++
Sbjct: 404 LIEAYGRCGSSDQALSIYDGMLQAGCTPDLATFNTLLAALAREGRWEHAELILDELNRSS 463

Query: 359 LKPQDSTIATLSVECSKALELDLAEALLDQISRCTNP------KPFSAFLAACDTMDKPE 412
            KP D   A++    +   EL+  + ++D +     P      K F    + C  +D+ E
Sbjct: 464 YKPNDIAYASMLHAYANGGELEKLKEMVDTLHTIYVPFTKILLKTFVLVYSKCSLVDEAE 523

Query: 413 RAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAK--RINAIEMDMA 469
            A   F  MR      D  T+  + S++G      ++G M    D+    R   +E D+ 
Sbjct: 524 DA---FLAMRHHGYLSDTSTFNAMISMYG------KKGMMDKATDTFALLRSTGLEPDVV 574

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESH 526
             N          L+   G EGM R+      +      TP   +YNTV+ S  +  +  
Sbjct: 575 TYNC---------LMGMYGREGMYRKCEATLRECMAAGQTPDLVSYNTVIFSYSKHGQLS 625

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
            A  IF +M + GI P++ TYN  + C      F  A ++V  M + G  P  +TY  L+
Sbjct: 626 SATRIFHEMVSNGIQPDSFTYNTFVGCYVNGGMFPEALSVVKHMHKTGCKPDEVTYRTLV 685

Query: 587 KILLDYGDFDEALNLLDLV 605
                 G F+E   +L  +
Sbjct: 686 DAYCKIGKFEEVERILKFI 704



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 104/510 (20%), Positives = 205/510 (40%), Gaps = 34/510 (6%)

Query: 194 VTYTELLKLAVWQKNLSAVHEIWEDYIKH-YSLSIFSLRKFVWSFTRLRDLKSAYETLQH 252
           VT   +L++   +  L+ V  +++   +  Y L +++    + + +R R  K A    + 
Sbjct: 83  VTIAVMLRILGRESQLTTVSRLFKSLREEGYPLDVYAYTSLISALSRNRKFKEALGFFEQ 142

Query: 253 M---------VALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHAC 303
           M         V   ++  LY  +   GR   + L++   + A  + +   ++++  I AC
Sbjct: 143 MKEAGPQPSLVTYNVIIDLYGKK---GRSWENILELFEEMKAQGI-QPDEYTYNTAITAC 198

Query: 304 GRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQD 363
                   A +L  QM+S    P   TY+  +              VLK M+     P  
Sbjct: 199 ASGSLCEEATELFTQMKSSNCTPDRVTYNALLDVYGKAGWYNEAANVLKEMESAGCLPNI 258

Query: 364 STIATLSVECSKALELDLAEALLDQ-ISRCTNPKPFS--AFLAACDTMDKPERAIKIFAK 420
            T   L     +A   + A  + D  +S+   P  F+  + L+A     K E+A++I+ +
Sbjct: 259 VTYNELLSAFGRAGLCNAAAEMKDSMVSKGIEPDVFTYTSLLSAYSRAGKVEQAMEIYNQ 318

Query: 421 MR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHIS 479
           MR     P+  T+  L  + G  N  + E            +  I  DM    ++   ++
Sbjct: 319 MRTSNCTPNSFTFNALIGMHGK-NKNFSE------------MMVIFEDMQACGVEPDIVT 365

Query: 480 MKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMK 536
             +LL A G  GM  E+++ F   K     P   T+N ++ +      S +A+ I+  M 
Sbjct: 366 WNSLLGAFGKNGMYSEVLKVFRGMKKAGFEPDKATFNILIEAYGRCGSSDQALSIYDGML 425

Query: 537 TCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFD 596
             G  P+ AT+N ++   +    ++ A  ++  + R  + P  + Y +++    + G+ +
Sbjct: 426 QAGCTPDLATFNTLLAALAREGRWEHAELILDELNRSSYKPNDIAYASMLHAYANGGELE 485

Query: 597 EALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVF 656
           +   ++D +    +P   +L  T +    +   +D  E     M  +    D ST + + 
Sbjct: 486 KLKEMVDTLHTIYVPFTKILLKTFVLVYSKCSLVDEAEDAFLAMRHHGYLSDTSTFNAMI 545

Query: 657 SGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           S Y   G  + A +   +L    L  +V T
Sbjct: 546 SMYGKKGMMDKATDTFALLRSTGLEPDVVT 575



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 80/391 (20%), Positives = 157/391 (40%), Gaps = 40/391 (10%)

Query: 348 MEVLKIMQQN-NLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNP---KPFSAFLA 403
           +EV   M+Q+ N +P   TIA +     +  +L     L   +     P     +++ ++
Sbjct: 66  LEVFNWMRQSVNFRPDGVTIAVMLRILGRESQLTTVSRLFKSLREEGYPLDVYAYTSLIS 125

Query: 404 ACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRIN 462
           A     K + A+  F +M++   +P + TY ++  L+G     +E              N
Sbjct: 126 ALSRNRKFKEALGFFEQMKEAGPQPSLVTYNVIIDLYGKKGRSWE--------------N 171

Query: 463 AIEM--DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLH 517
            +E+  +M    IQ    +    + A  +  +  E  + F   K+   TP   TYN +L 
Sbjct: 172 ILELFEEMKAQGIQPDEYTYNTAITACASGSLCEEATELFTQMKSSNCTPDRVTYNALLD 231

Query: 518 SLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYP 577
              +A   + A  + K+M++ G  PN  TYN ++          +A+ +   MV  G  P
Sbjct: 232 VYGKAGWYNEAANVLKEMESAGCLPNIVTYNELLSAFGRAGLCNAAAEMKDSMVSKGIEP 291

Query: 578 QTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFII 637
              TYT+L+      G  ++A+ + + +       +   +N ++    +      +  I 
Sbjct: 292 DVFTYTSLLSAYSRAGKVEQAMEIYNQMRTSNCTPNSFTFNALIGMHGKNKNFSEMMVIF 351

Query: 638 EQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDFEDL 697
           E M    V+PD  T + +   +   G ++  ++  + +       + +  E  ++ F  L
Sbjct: 352 EDMQACGVEPDIVTWNSLLGAFGKNGMYSEVLKVFRGM-------KKAGFEPDKATFNIL 404

Query: 698 ILAEDSEAESRILQFCEDSNENLAFTAALLQ 728
           I     EA  R    C  S++ L+    +LQ
Sbjct: 405 I-----EAYGR----CGSSDQALSIYDGMLQ 426



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/264 (24%), Positives = 112/264 (42%), Gaps = 19/264 (7%)

Query: 413 RAIKIFAKMRQKL--RPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           +A+++F  MRQ +  RPD  T  ++  + G  +       +F  +    R     +D+  
Sbjct: 64  KALEVFNWMRQSVNFRPDGVTIAVMLRILGRESQLTTVSRLFKSL----REEGYPLDV-- 117

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQES-H 526
                   +  +L+ AL      +E + +F   K     P   TYN ++    +   S  
Sbjct: 118 -------YAYTSLISALSRNRKFKEALGFFEQMKEAGPQPSLVTYNVIIDLYGKKGRSWE 170

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
             +E+F++MK  GI P+  TYN  I  C+     + A+ L + M      P  +TY AL+
Sbjct: 171 NILELFEEMKAQGIQPDEYTYNTAITACASGSLCEEATELFTQMKSSNCTPDRVTYNALL 230

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
            +    G ++EA N+L  +   G   +++ YN +L      G  +    + + M    ++
Sbjct: 231 DVYGKAGWYNEAANVLKEMESAGCLPNIVTYNELLSAFGRAGLCNAAAEMKDSMVSKGIE 290

Query: 647 PDPSTCHFVFSGYVNCGFHNSAME 670
           PD  T   + S Y   G    AME
Sbjct: 291 PDVFTYTSLLSAYSRAGKVEQAME 314



 Score = 69.3 bits (168), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 130/633 (20%), Positives = 237/633 (37%), Gaps = 103/633 (16%)

Query: 106 VMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFL 165
           ++E +  M+ + I  +   Y   + A   G   EEA+ L   + +     P    YN+ L
Sbjct: 172 ILELFEEMKAQGIQPDEYTYNTAITACASGSLCEEATELFTQM-KSSNCTPDRVTYNALL 230

Query: 166 GACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYS 224
               K      A   L  M+S     N VTY ELL         +A  E+ +  + K   
Sbjct: 231 DVYGKAGWYNEAANVLKEMESAGCLPNIVTYNELLSAFGRAGLCNAAAEMKDSMVSKGIE 290

Query: 225 LSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLN 284
             +F+    + +++R   ++ A E    M            RTS               N
Sbjct: 291 PDVFTYTSLLSAYSRAGKVEQAMEIYNQM------------RTS---------------N 323

Query: 285 ALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGL 344
             P      ++F+ +I   G+ +N      +   MQ+ G++P   T++  + A       
Sbjct: 324 CTPN----SFTFNALIGMHGKNKNFSEMMVIFEDMQACGVEPDIVTWNSLLGAFG----- 374

Query: 345 RNGM--EVLKI---MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFS 399
           +NGM  EVLK+   M++   +P  +T                   L++   RC +     
Sbjct: 375 KNGMYSEVLKVFRGMKKAGFEPDKATF----------------NILIEAYGRCGSS---- 414

Query: 400 AFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSA 458
                       ++A+ I+  M Q    PD+ T+  L +        +E   +   +D  
Sbjct: 415 ------------DQALSIYDGMLQAGCTPDLATFNTLLAALAR-EGRWEHAELI--LDEL 459

Query: 459 KRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHS 518
            R +    D+A  ++ H++ +   L K       ++E++        P       T +  
Sbjct: 460 NRSSYKPNDIAYASMLHAYANGGELEK-------LKEMVDTLHTIYVPFTKILLKTFVLV 512

Query: 519 LVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQ 578
             +      A + F  M+  G   + +T+N MI           A+   +++   G  P 
Sbjct: 513 YSKCSLVDEAEDAFLAMRHHGYLSDTSTFNAMISMYGKKGMMDKATDTFALLRSTGLEPD 572

Query: 579 TMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIE 638
            +TY  L+ +    G + +    L      G   D++ YNT++    + G++     I  
Sbjct: 573 VVTYNCLMGMYGREGMYRKCEATLRECMAAGQTPDLVSYNTVIFSYSKHGQLSSATRIFH 632

Query: 639 QMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLC--EEVS--TLEE---KR 691
           +M  N +QPD  T +     YVN G    A+  ++ +  +  C  +EV+  TL +   K 
Sbjct: 633 EMVSNGIQPDSFTYNTFVGCYVNGGMFPEALSVVKHMH-KTGCKPDEVTYRTLVDAYCKI 691

Query: 692 SDFEDLILAEDSEAESRILQFCEDSNENLAFTA 724
             FE++          RIL+F + S+ N +  A
Sbjct: 692 GKFEEV---------ERILKFIKSSDPNFSKAA 715



 Score = 57.0 bits (136), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 88/220 (40%), Gaps = 9/220 (4%)

Query: 482 NLLKALGAEGMIRELIQYFCDSKT-----PLGTPTYNTVLHSLVEAQESHRAMEIFKQMK 536
           +++K LG EG   + ++ F   +      P G  T   +L  L    +      +FK ++
Sbjct: 51  SIMKGLGREGQWNKALEVFNWMRQSVNFRPDGV-TIAVMLRILGRESQLTTVSRLFKSLR 109

Query: 537 TCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYG-DF 595
             G P +   Y  +I   S  R FK A      M   G  P  +TY  +I +    G  +
Sbjct: 110 EEGYPLDVYAYTSLISALSRNRKFKEALGFFEQMKEAGPQPSLVTYNVIIDLYGKKGRSW 169

Query: 596 DEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI-DVIEFIIEQMHQNKVQPDPSTCHF 654
           +  L L + +  +GI  D   YNT +  AC  G + +    +  QM  +   PD  T + 
Sbjct: 170 ENILELFEEMKAQGIQPDEYTYNTAI-TACASGSLCEEATELFTQMKSSNCTPDRVTYNA 228

Query: 655 VFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDF 694
           +   Y   G++N A   L+ +        + T  E  S F
Sbjct: 229 LLDVYGKAGWYNEAANVLKEMESAGCLPNIVTYNELLSAF 268


>gi|225432035|ref|XP_002273694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Vitis vinifera]
          Length = 666

 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 74/339 (21%), Positives = 150/339 (44%), Gaps = 21/339 (6%)

Query: 318 QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKAL 377
            M+  G++P+  TY+  ++A+  +  +    ++L  M      P + +  TL     K  
Sbjct: 171 NMKKDGMEPNVFTYNILLKALCKNNRVDGAHKLLVEMSSKGCDPDEVSYTTLISSLCKLG 230

Query: 378 ELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLF 436
           ++  A  L   +S   +   ++A +         E A ++  +M  K + P++ +Y  + 
Sbjct: 231 KVKEAREL--AMSFTPSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGIDPNVISYTTI- 287

Query: 437 SLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIREL 496
                +NA  + GN+   +    ++       AR    + H +  +L+K    +G   E 
Sbjct: 288 -----INALSDAGNVELSLAVLAKM------FARGCSPNLH-TFTSLIKGFFLKGGSHEA 335

Query: 497 IQYFCDSKTPLGTP----TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID 552
           + ++ D     G       YN ++H L   +    A+ +F QM+  G  PN  TY+ +ID
Sbjct: 336 LDFW-DRMIREGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALID 394

Query: 553 CCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPH 612
             +       AS + + M+  G +P  + YT ++ +L     F++A  L++ + +E  P 
Sbjct: 395 GYAKAGDLDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPP 454

Query: 613 DVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
           + + +NT +K  C  GR+D    + +QM  +   P+ +T
Sbjct: 455 NTVTFNTFIKGLCGSGRVDWAIKVFDQMGNSGCFPNTTT 493



 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 73/324 (22%), Positives = 139/324 (42%), Gaps = 36/324 (11%)

Query: 378 ELDLAEALLDQIS----RCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTY 432
           E+D  + LL Q+      C+    F + + +       E+A+K F +M+  +++P ++ Y
Sbjct: 91  EMDCVQYLLQQMKLEGISCSE-DLFISVIGSYRRAGSSEQALKTFYRMQDFRVKPTVKIY 149

Query: 433 -------------ELLFSLFGNVNAPYEEGNMFS------------QVDSAKRINAIEMD 467
                        +++  ++ N+     E N+F+            +VD A ++    ++
Sbjct: 150 NHILDALLDENRFQMINPIYSNMKKDGMEPNVFTYNILLKALCKNNRVDGAHKL---LVE 206

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHR 527
           M+        +S   L+ +L   G ++E  +    S TP   P YN +++ + +      
Sbjct: 207 MSSKGCDPDEVSYTTLISSLCKLGKVKE-ARELAMSFTP-SVPVYNALINGVCKEYTFEE 264

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A ++  +M   GI PN  +Y  +I+  S     + + A+++ M   G  P   T+T+LIK
Sbjct: 265 AFQLLDEMMNKGIDPNVISYTTIINALSDAGNVELSLAVLAKMFARGCSPNLHTFTSLIK 324

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
                G   EAL+  D +  EG+  +V+ YN ++   C K  +     +  QM  N   P
Sbjct: 325 GFFLKGGSHEALDFWDRMIREGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCP 384

Query: 648 DPSTCHFVFSGYVNCGFHNSAMEA 671
           +  T   +  GY   G  + A E 
Sbjct: 385 NVRTYSALIDGYAKAGDLDGASEV 408



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 87/385 (22%), Positives = 153/385 (39%), Gaps = 32/385 (8%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLS- 370
           A QL+ +M + G+ P+  +Y   I A+     +   + VL  M      P   T  +L  
Sbjct: 265 AFQLLDEMMNKGIDPNVISYTTIINALSDAGNVELSLAVLAKMFARGCSPNLHTFTSLIK 324

Query: 371 ---VECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMR-QKLR 426
              ++      LD  + ++ +     N   ++A +    +      A+ +F +M      
Sbjct: 325 GFFLKGGSHEALDFWDRMIRE-GVVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCC 383

Query: 427 PDIRTYELLFSLF---GNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNL 483
           P++RTY  L   +   G+++   E  N                 M  +    + ++   +
Sbjct: 384 PNVRTYSALIDGYAKAGDLDGASEVWNW----------------MITHGCHPNVVAYTCM 427

Query: 484 LKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGI 540
           +  L    M  +   LI+       P  T T+NT +  L  +     A+++F QM   G 
Sbjct: 428 VDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLCGSGRVDWAIKVFDQMGNSGC 487

Query: 541 PPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALN 600
            PN  TYN ++D     R F  A  LV  M   G     +TY  +I      G   EAL 
Sbjct: 488 FPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIELNLVTYNTIIYGYCCAGMLGEALE 547

Query: 601 LLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYV 660
           LL  + + G   D +  N ++   C++G++++   +++++   K  PD      + SG  
Sbjct: 548 LLGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAIQLMDRLSAGKWHPDIIAYTSLISGIC 607

Query: 661 NCGFHNSAMEALQVLSMRMLCEEVS 685
               H    EA+  L  RML E +S
Sbjct: 608 T---HIGVEEAIVYLR-RMLSEGIS 628



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 131/662 (19%), Positives = 254/662 (38%), Gaps = 65/662 (9%)

Query: 24  KHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHH 83
           KHE  ++   LE  +++  +       ++   QM I       E     +LL  +     
Sbjct: 51  KHEH-DITLALEYFKSIANSKSFKHTPLT--YQMMIEKLASEREMDCVQYLLQQMKLEGI 107

Query: 84  SLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASN 143
           S   D F  ++    R+      ++T+  M++  +    K Y  ++ AL      +   N
Sbjct: 108 SCSEDLFISVIGSYRRAGSSEQALKTFYRMQDFRVKPTVKIYNHILDALLDENRFQMI-N 166

Query: 144 LIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLA 203
            IY   ++ G+ P +  YN  L A  K + +  A+  L  M S+    +EV+YT L+   
Sbjct: 167 PIYSNMKKDGMEPNVFTYNILLKALCKNNRVDGAHKLLVEMSSKGCDPDEVSYTTLISSL 226

Query: 204 VWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLY 263
                L  V E  E  +  ++ S+      +    +    + A++ L  M          
Sbjct: 227 C---KLGKVKEARELAMS-FTPSVPVYNALINGVCKEYTFEEAFQLLDEM---------- 272

Query: 264 INRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLG 323
                        ++  I  N +        S++ +I+A     N  L+  ++ +M + G
Sbjct: 273 -------------MNKGIDPNVI--------SYTTIINALSDAGNVELSLAVLAKMFARG 311

Query: 324 LQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTI-ATLSVECSKALELDLA 382
             P+ HT+   I+      G    ++    M +  + P      A +   CSK   L  A
Sbjct: 312 CSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIREGVVPNVVAYNALMHGLCSKR-SLGDA 370

Query: 383 EALLDQI---SRCTNPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSL 438
            ++ +Q+     C N + +SA +         + A +++  M      P++  Y  +  +
Sbjct: 371 VSVFNQMEINGCCPNVRTYSALIDGYAKAGDLDGASEVWNWMITHGCHPNVVAYTCMVDV 430

Query: 439 FGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQ 498
                      +MF+Q         +  +M   N   + ++    +K L   G +   I+
Sbjct: 431 LC-------RNSMFNQA------YCLIENMQVENCPPNTVTFNTFIKGLCGSGRVDWAIK 477

Query: 499 YF---CDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID--C 553
            F    +S     T TYN +L SL++ +    A  + K M+  GI  N  TYN +I   C
Sbjct: 478 VFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIELNLVTYNTIIYGYC 537

Query: 554 CSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHD 613
           C+ +     A  L+  MV  G  P  +T   +I      G  + A+ L+D +S      D
Sbjct: 538 CAGM--LGEALELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAIQLMDRLSAGKWHPD 595

Query: 614 VLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           ++ Y +++   C    ++     + +M    + P+ +T + +     +   H+ A++ L 
Sbjct: 596 IIAYTSLISGICTHIGVEEAIVYLRRMLSEGISPNVATWNVLVRHLFSNMGHSGAVQFLD 655

Query: 674 VL 675
            +
Sbjct: 656 AV 657


>gi|357521009|ref|XP_003630793.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524815|gb|AET05269.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 584

 Score = 87.0 bits (214), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 84/402 (20%), Positives = 173/402 (43%), Gaps = 19/402 (4%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ ++ A  R +       L+ +++  G++P S  ++  I A      +   M++ + M
Sbjct: 80  TYTTLVAALTRLKRFNSIPSLLSKVEENGVKPDSILFNAMINAFSDSGKVHEAMKIFRKM 139

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDK 410
           ++   KP  ST  TL            A  LL+ + +  N KP    ++  + A  T ++
Sbjct: 140 KECGCKPTTSTFNTLIKGFGIVGRPHEAMKLLEMMIQDGNVKPNERTYNILIQAWCTKNE 199

Query: 411 PERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
            E A  +  KM    ++PDI TY  L   F              + D+A+R+  ++M   
Sbjct: 200 LEEAWNVMHKMVNSGMQPDIVTYNTLARAFAQ----------NGETDNAERL-ILKMQQY 248

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESH 526
            N ++ +  +   +++    EG + E +++    K     P    +N+++   ++  ++ 
Sbjct: 249 NNKVKPNERTCGIIIRGYCKEGNMTEALRFLYKMKELGVHPNPVVFNSLIKGYLDITDTD 308

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
              E    M+  GI P+  TY+ +++  S      +   +   MV+    P    Y+ L 
Sbjct: 309 GVEEALTLMEEFGIKPDVVTYSTIMNAWSSSGLMDNCEEIFDDMVKAEIEPDIQAYSILA 368

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
           K  +  G  D+A  LL+ ++  G+  +V+++ TI+   C  G++D    + E+M++    
Sbjct: 369 KGYVRAGQPDKAEALLNSMTKYGLQANVVIFTTIISGWCAAGKMDCALRLYEKMNEMGTP 428

Query: 647 PDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLE 688
            +  T   +  GY        A E L  +    +  E+ST+E
Sbjct: 429 LNLKTYETLIWGYGEAKQPWKAEELLVTMEESGVAPEMSTIE 470



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/146 (22%), Positives = 67/146 (45%), Gaps = 1/146 (0%)

Query: 515 VLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDG 574
           ++ +L+   + H A+ IF  +   G  P   TY  ++   + ++ F S  +L+S +  +G
Sbjct: 49  LMSTLIRKGKPHEAVTIFNSLTEEGHKPTIITYTTLVAALTRLKRFNSIPSLLSKVEENG 108

Query: 575 FYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIE 634
             P ++ + A+I    D G   EA+ +   +   G       +NT++K     GR     
Sbjct: 109 VKPDSILFNAMINAFSDSGKVHEAMKIFRKMKECGCKPTTSTFNTLIKGFGIVGRPHEAM 168

Query: 635 FIIEQMHQN-KVQPDPSTCHFVFSGY 659
            ++E M Q+  V+P+  T + +   +
Sbjct: 169 KLLEMMIQDGNVKPNERTYNILIQAW 194



 Score = 47.8 bits (112), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 27/113 (23%), Positives = 54/113 (47%)

Query: 563 ASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILK 622
           A  + + +  +G  P  +TYT L+  L     F+   +LL  V   G+  D +L+N ++ 
Sbjct: 62  AVTIFNSLTEEGHKPTIITYTTLVAALTRLKRFNSIPSLLSKVEENGVKPDSILFNAMIN 121

Query: 623 KACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
              + G++     I  +M +   +P  ST + +  G+   G  + AM+ L+++
Sbjct: 122 AFSDSGKVHEAMKIFRKMKECGCKPTTSTFNTLIKGFGIVGRPHEAMKLLEMM 174



 Score = 40.4 bits (93), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 47/225 (20%), Positives = 86/225 (38%), Gaps = 22/225 (9%)

Query: 121 NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLC 180
           N +   ++++  CK G + EA   +Y + E  G++P   V+NS +     +         
Sbjct: 255 NERTCGIIIRGYCKEGNMTEALRFLYKMKE-LGVHPNPVVFNSLIKGYLDITDTDGVEEA 313

Query: 181 LDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK-HYSLSIFSLRKFVWSFTR 239
           L LM+   +  + VTY+ ++        +    EI++D +K      I +       + R
Sbjct: 314 LTLMEEFGIKPDVVTYSTIMNAWSSSGLMDNCEEIFDDMVKAEIEPDIQAYSILAKGYVR 373

Query: 240 LRDLKSAYETLQHMVALAMMGKLYINRT------SEG------RLRSSRLDIPIPLNALP 287
                 A   L  M    +   + I  T      + G      RL     ++  PLN L 
Sbjct: 374 AGQPDKAEALLNSMTKYGLQANVVIFTTIISGWCAAGKMDCALRLYEKMNEMGTPLN-LK 432

Query: 288 VMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYD 332
             + L W +       G  +    AE+L++ M+  G+ P   T +
Sbjct: 433 TYETLIWGY-------GEAKQPWKAEELLVTMEESGVAPEMSTIE 470


>gi|297727505|ref|NP_001176116.1| Os10g0368800 [Oryza sativa Japonica Group]
 gi|20043026|gb|AAM08834.1|AC113335_14 Putative PPR-repeat protein [Oryza sativa Japonica Group]
 gi|22830267|gb|AAN08650.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|31431615|gb|AAP53366.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255679344|dbj|BAH94844.1| Os10g0368800 [Oryza sativa Japonica Group]
          Length = 913

 Score = 87.0 bits (214), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 83/338 (24%), Positives = 145/338 (42%), Gaps = 20/338 (5%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           F+ VI  C        A +L   M   G QP +HTY   +  +     + + + +L+ M+
Sbjct: 314 FNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREME 373

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKPE 412
           +    P   T   +     K    D   ALL+++S      N + ++  + A     + +
Sbjct: 374 KKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMD 433

Query: 413 RAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471
            A+ +  +MR Q   PDI +Y  +     N     E  +MF         N +E  +  N
Sbjct: 434 EAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFE--------NLLEEGVVAN 485

Query: 472 NIQHSHISMKNLLKALGAEGMIR---ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRA 528
            I ++ I +  LL+    +  +R   E+I + C     L   +YN ++ ++ +     R+
Sbjct: 486 GITYNTI-IHALLRDGRWQDAVRLAKEMILHGCS----LDVVSYNGLIKAMCKDGNVDRS 540

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
           + + ++M   GI PN  +YNI+I      R  + A  L   M+  G  P  +TY  LI  
Sbjct: 541 LVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLING 600

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE 626
           L   G    ALNLL+ +  E +  D++ YN ++   C+
Sbjct: 601 LCKMGWMHAALNLLEKLHNENVHPDIITYNILISWHCK 638



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 85/407 (20%), Positives = 170/407 (41%), Gaps = 29/407 (7%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           +  VIHA         A  L+ +M  +G     +T+D  +R +     +R    ++  M 
Sbjct: 213 YQTVIHALCDQGGVTEAATLLNEMLLMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMM 272

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAI 415
                P   T   L     +  + D A A+L ++    N   F+  +  C    K   A 
Sbjct: 273 TKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPE-LNVVLFNTVIGGCLAEGKLAEAT 331

Query: 416 KIFAKMRQK-LRPDIRTYELL---FSLFGNVNAPY-------EEG------------NMF 452
           +++  M  K  +PD  TY +L       G + +         ++G            + F
Sbjct: 332 ELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSF 391

Query: 453 SQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP-- 510
            +        A+  +M+   +  +      ++ AL  +G + E +    + ++    P  
Sbjct: 392 CKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDI 451

Query: 511 -TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSM 569
            +YNT+++ L   ++   A  +F+ +   G+  N  TYN +I        ++ A  L   
Sbjct: 452 CSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKE 511

Query: 570 MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
           M+  G     ++Y  LIK +   G+ D +L LL+ ++ +GI  + + YN ++ + C++ R
Sbjct: 512 MILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERR 571

Query: 630 I-DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
           + D +E + +QM    + PD  T + + +G    G+ ++A+  L+ L
Sbjct: 572 VRDALE-LSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKL 617



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 59/278 (21%), Positives = 118/278 (42%), Gaps = 19/278 (6%)

Query: 413 RAIKIFAKMRQK--LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           RA+ +  ++ ++  ++P  R+Y ++ S+    +   +   ++ ++    R+         
Sbjct: 121 RALHLLDQLPRRFGVQPSFRSYNVVLSVLARADCHADALALYRRMVHRDRVPPTTFTFGV 180

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAME 530
                +  ++  L +A  A  ++R + ++ C     L    Y TV+H+L +      A  
Sbjct: 181 -----AARALCRLGRADEALALLRGMARHGCVPDAVL----YQTVIHALCDQGGVTEAAT 231

Query: 531 IFKQMKTCGIPPNAATY-NIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
           +  +M   G   +  T+ +++   C + R  + A+ LV  M+  G  P  MTY  L++ L
Sbjct: 232 LLNEMLLMGCAADVNTFDDVVRGMCGLGR-VREAARLVDRMMTKGCMPGVMTYGFLLQGL 290

Query: 590 LDYGDFDEALNLLDLVSLEGIPH-DVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
                 DEA  +L  V     P  +V+L+NT++     +G++     + E M     QPD
Sbjct: 291 CRVRQADEARAMLGRV-----PELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPD 345

Query: 649 PSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
             T   +  G    G   SA+  L+ +  +     V T
Sbjct: 346 AHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVT 383


>gi|297744958|emb|CBI38550.3| unnamed protein product [Vitis vinifera]
          Length = 795

 Score = 87.0 bits (214), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 83/315 (26%), Positives = 127/315 (40%), Gaps = 16/315 (5%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           +E     M+ LGL P S T++  I A   +  L N +++L  M+   LKP   T   L  
Sbjct: 420 SESFHTGMRQLGLAPDSATFNTMINAYCKEGNLGNALKLLNEMKSYGLKPNSITCNILVQ 479

Query: 372 ECSKALELDLAEALL-DQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ----KLR 426
               A E++    LL D +    +P P +   A  D   K  RA  I     Q     ++
Sbjct: 480 RLCAAGEIEKTMDLLNDMLVMGFHPTP-TTHKAVLDASSKSRRADVILHMHDQLVGMGVK 538

Query: 427 PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKA 486
            D+ TY  L S F  +        +F  +     +  I   +  N + H +    +L KA
Sbjct: 539 LDLSTYNTLISTFCRLGMIRRATLVFKDMMGKGILADI---ITYNALIHGYCISSHLKKA 595

Query: 487 LGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAAT 546
                      Q   +  +P    TYN +L  L  A+    A  +  QMK  G+ PNA T
Sbjct: 596 FAVHS------QMLTEGVSP-NVETYNILLGGLSAARLIKEAAGLVNQMKERGLVPNATT 648

Query: 547 YNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVS 606
           Y+I++     I   K    L   M+  GF P+T TY  LI          +A  L+  + 
Sbjct: 649 YDILVSGHGKIGNMKECVKLYCEMITKGFVPKTRTYNVLISCFAKGKKMSQAKELMQEMQ 708

Query: 607 LEGIPHDVLLYNTIL 621
           + GIP +   Y+ ++
Sbjct: 709 VRGIPPNSSTYDILI 723



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/278 (21%), Positives = 129/278 (46%), Gaps = 21/278 (7%)

Query: 413 RAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471
           RA+++   M+ +   PDI TY  L + F  +      G++F+    AK++     +++  
Sbjct: 35  RAVELLEGMKTEGPAPDIVTYNTLMNGFCKI------GDLFT----AKKLMG---EISLV 81

Query: 472 NIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRA 528
           N++ + I+   L+ A      + + +  + +       P   TY  +++ L ++ +   A
Sbjct: 82  NLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGLCKSGKVEEA 141

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALV--SMMVRDGFYPQTMTYTALI 586
             +F++M+  G+ PN  +Y  +ID  S+ +    A A V    MV  G     + YTAL+
Sbjct: 142 KSVFREMEEVGVVPNRFSYATLID--SLFKEGNVAEAFVLQGRMVVRGIGFDVVVYTALM 199

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
             L   G  + A ++  ++  E +  + + Y+ ++   C+ G ++  E ++++M +  + 
Sbjct: 200 DGLFKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGDVNKGELLLQEMEEKHIF 259

Query: 647 PDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEV 684
           P+      +  GY   G  N AM+ ++ +  R +   V
Sbjct: 260 PNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQRNILPNV 297



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 114/557 (20%), Positives = 226/557 (40%), Gaps = 39/557 (7%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y  +M  LCK G +EEA ++   + E  G+ P    Y + + +  K  ++  A +    M
Sbjct: 125 YTCIMNGLCKSGKVEEAKSVFREM-EEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRM 183

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSL--SIFSLRKFVWSFTRLRD 242
             R +G + V YT L+   +++  ++   E     +   SL  +  +    +    +L D
Sbjct: 184 VVRGIGFDVVVYTALMD-GLFKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGD 242

Query: 243 LKSAYETLQ-----HMVALAMMGKLYINRTSEGRLRSSRLDIP---IPLNALPVMKVLRW 294
           +      LQ     H+    ++    ++  ++  L +  +D+    +  N LP +    +
Sbjct: 243 VNKGELLLQEMEEKHIFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQRNILPNV----F 298

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
            +  +I    +    G+A  L  +M+S GL+ ++   D F+  +     +    E+ K M
Sbjct: 299 VYGTLIDGYFKADQRGIALDLFKEMKSRGLEENNFVIDSFVNNLKRSGRMEEADELFKDM 358

Query: 355 QQNNLKPQDSTIATLSVECSKALE----LDLAEALLDQISRCTNPKPFSAFLAACDTMDK 410
               L P      ++     KA +     ++A+ + ++ S   +   ++  +     + K
Sbjct: 359 MSRGLLPDRVNYTSMMDGFFKAGKESDAFNIAQEMTEK-SSGFDVVAYNVLINGLFKLGK 417

Query: 411 PERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
            E        MRQ  L PD  T+  +      +NA  +EGN+    ++ K +N    +M 
Sbjct: 418 YESE-SFHTGMRQLGLAPDSATFNTM------INAYCKEGNLG---NALKLLN----EMK 463

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRA- 528
              ++ + I+   L++ L A G I + +    D       PT  T    L  + +S RA 
Sbjct: 464 SYGLKPNSITCNILVQRLCAAGEIEKTMDLLNDMLVMGFHPTPTTHKAVLDASSKSRRAD 523

Query: 529 --MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
             + +  Q+   G+  + +TYN +I     +   + A+ +   M+  G     +TY ALI
Sbjct: 524 VILHMHDQLVGMGVKLDLSTYNTLISTFCRLGMIRRATLVFKDMMGKGILADIITYNALI 583

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
                     +A  +   +  EG+  +V  YN +L        I     ++ QM +  + 
Sbjct: 584 HGYCISSHLKKAFAVHSQMLTEGVSPNVETYNILLGGLSAARLIKEAAGLVNQMKERGLV 643

Query: 647 PDPSTCHFVFSGYVNCG 663
           P+ +T   + SG+   G
Sbjct: 644 PNATTYDILVSGHGKIG 660



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 82/175 (46%), Gaps = 6/175 (3%)

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC-CSIIRCFKSASALVSMM 570
           +N ++       E  RA+E+ + MKT G  P+  TYN +++  C I   F +A  L+  +
Sbjct: 20  FNVLIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLF-TAKKLMGEI 78

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
                 P  +TYT LI         ++AL + D ++++ +  DV+ Y  I+   C+ G++
Sbjct: 79  SLVNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGLCKSGKV 138

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVS 685
           +  + +  +M +  V P+     F ++  ++  F    +    VL  RM+   + 
Sbjct: 139 EEAKSVFREMEEVGVVPN----RFSYATLIDSLFKEGNVAEAFVLQGRMVVRGIG 189



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 44/221 (19%), Positives = 89/221 (40%), Gaps = 7/221 (3%)

Query: 458 AKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNT 514
            + +N  +    R +++H ++    L+      G I   ++     KT    P   TYNT
Sbjct: 2   TRHLNTYQHPEIRRSVEHFNV----LIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNT 57

Query: 515 VLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDG 574
           +++   +  +   A ++  ++    + PN  TY  +ID     +C + A  +   M    
Sbjct: 58  LMNGFCKIGDLFTAKKLMGEISLVNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKS 117

Query: 575 FYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIE 634
             P  +TYT ++  L   G  +EA ++   +   G+  +   Y T++    ++G +    
Sbjct: 118 LVPDVVTYTCIMNGLCKSGKVEEAKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAF 177

Query: 635 FIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
            +  +M    +  D      +  G    G  N+A +  QVL
Sbjct: 178 VLQGRMVVRGIGFDVVVYTALMDGLFKAGMANNAEDMFQVL 218


>gi|226507918|ref|NP_001144813.1| uncharacterized protein LOC100277891 [Zea mays]
 gi|195647376|gb|ACG43156.1| hypothetical protein [Zea mays]
          Length = 597

 Score = 87.0 bits (214), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 80/374 (21%), Positives = 152/374 (40%), Gaps = 24/374 (6%)

Query: 324 LQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAE 383
            +P    Y+  I A    R L         + +    P + T A L      + +L  AE
Sbjct: 168 FRPDIICYNLLIDAYGQKRQLSEAEAAYMALLEARCVPTEDTYALLLRAYCGSGQLHRAE 227

Query: 384 ALLDQISRCTNPKPFSAFLAACDTMDKP---ERAIKIFAKMR-QKLRPDIRTYELLFSLF 439
            ++ ++ R   P   + + A  D + K    E+A++++ +M+ ++ R +  TY L+ +++
Sbjct: 228 GVISEMQRNGIPPTATVYNAYLDGLLKARCSEKAVEVYQRMKKERCRTNTZTYXLMINVY 287

Query: 440 GNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQY 499
           G  N P     +F ++ S            + NI     +   L+ A   EG+  +  + 
Sbjct: 288 GKANQPMSSLRVFREMKSVG---------CKPNI----CTYTALVNAFAREGLCEKAEEV 334

Query: 500 FCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSI 556
           F + +     P    YN ++ +   A     A EIF  M+  G  P+ A+YNI++D    
Sbjct: 335 FEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMEHMGCEPDRASYNILVDAFGR 394

Query: 557 IRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLL 616
               + A A    + + G  P   ++  L+      G+      ++  +   G+  D   
Sbjct: 395 AGLHQEAEAAFQELKQQGMRPTMKSHMLLLSAHARSGNVARCEEVMAQLHKSGLRPDTFA 454

Query: 617 YNTILKKACEKGRIDVIEFIIEQMHQ----NKVQPDPSTCHFVFSGYVNCGFHNSAMEAL 672
            N +L      GR+D +E +   M +    +   PD ST + + + Y   G+ +    A 
Sbjct: 455 LNAMLNAYGRAGRLDDMERLFAAMERGDGASAGAPDTSTYNVLVNAYGRAGYLDRMEAAF 514

Query: 673 QVLSMRMLCEEVST 686
           + L+ R L  +V T
Sbjct: 515 RSLAARGLAADVVT 528



 Score = 57.0 bits (136), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 55/268 (20%), Positives = 100/268 (37%), Gaps = 27/268 (10%)

Query: 422 RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAK---------------------- 459
           R   RPDI  Y LL   +G      E    +  +  A+                      
Sbjct: 165 RSSFRPDIICYNLLIDAYGQKRQLSEAEAAYMALLEARCVPTEDTYALLLRAYCGSGQLH 224

Query: 460 RINAIEMDMARNNIQHS----HISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTV 515
           R   +  +M RN I  +    +  +  LLKA  +E  + E+ Q     +    T TY  +
Sbjct: 225 RAEGVISEMQRNGIPPTATVYNAYLDGLLKARCSEKAV-EVYQRMKKERCRTNTZTYXLM 283

Query: 516 LHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGF 575
           ++   +A +   ++ +F++MK+ G  PN  TY  +++  +     + A  +   M + G 
Sbjct: 284 INVYGKANQPMSSLRVFREMKSVGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGH 343

Query: 576 YPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEF 635
            P    Y AL++     G    A  +  L+   G   D   YN ++      G     E 
Sbjct: 344 EPDVYAYNALMEAYSRAGLPQGASEIFSLMEHMGCEPDRASYNILVDAFGRAGLHQEAEA 403

Query: 636 IIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
             +++ Q  ++P   +   + S +   G
Sbjct: 404 AFQELKQQGMRPTMKSHMLLLSAHARSG 431



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 56/291 (19%), Positives = 124/291 (42%), Gaps = 26/291 (8%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGM-EVLKI 353
           +++ +++A  R      AE++  +MQ  G +P  + Y+  + A  S  GL  G  E+  +
Sbjct: 314 TYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAY-SRAGLPQGASEIFSL 372

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR-CTNP--KPFSAFLAACDTMDK 410
           M+    +P  ++   L     +A     AEA   ++ +    P  K     L+A      
Sbjct: 373 MEHMGCEPDRASYNILVDAFGRAGLHQEAEAAFQELKQQGMRPTMKSHMLLLSAHARSGN 432

Query: 411 PERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
             R  ++ A++ +  LRPD      + + +G      +   +F+ ++     +A   D +
Sbjct: 433 VARCEEVMAQLHKSGLRPDTFALNAMLNAYGRAGRLDDMERLFAAMERGDGASAGAPDTS 492

Query: 470 RNNI------QHSHIS-MKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEA 522
             N+      +  ++  M+   ++L A G+  +++             T+ + + +    
Sbjct: 493 TYNVLVNAYGRAGYLDRMEAAFRSLAARGLAADVV-------------TWTSRIGAYARK 539

Query: 523 QESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRD 573
           +E  + + +F++M   G  P+A T  +++  CS  R  +  +A+V  M +D
Sbjct: 540 KEYGQCLRVFEEMVDAGCYPDAGTAKVLLAACSDERQVEQVTAIVRSMHKD 590



 Score = 46.2 bits (108), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 65/379 (17%), Positives = 138/379 (36%), Gaps = 61/379 (16%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           AE ++ +MQ  G+ P++  Y+ ++  ++  R     +EV + M++   +    T   +  
Sbjct: 226 AEGVISEMQRNGIPPTATVYNAYLDGLLKARCSEKAVEVYQRMKKERCRTNTZTYXLMIN 285

Query: 372 ECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDKPERAIKIFAKMRQKL-R 426
              KA +   +  +  ++ +    KP    ++A + A       E+A ++F +M+Q    
Sbjct: 286 VYGKANQPMSSLRVFREM-KSVGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHE 344

Query: 427 PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKA 486
           PD+  Y  L   +     P     +FS ++        E D A  NI         L+ A
Sbjct: 345 PDVYAYNALMEAYSRAGLPQGASEIFSLMEHM----GCEPDRASYNI---------LVDA 391

Query: 487 LGAEGMIRELIQYFCDSKTPLGTPTYNT---VLHSLVEAQESHRAMEIFKQMKTCGI--- 540
            G  G+ +E    F + K     PT  +   +L +   +    R  E+  Q+   G+   
Sbjct: 392 FGRAGLHQEAEAAFQELKQQGMRPTMKSHMLLLSAHARSGNVARCEEVMAQLHKSGLRPD 451

Query: 541 ------------------------------------PPNAATYNIMIDCCSIIRCFKSAS 564
                                                P+ +TYN++++            
Sbjct: 452 TFALNAMLNAYGRAGRLDDMERLFAAMERGDGASAGAPDTSTYNVLVNAYGRAGYLDRME 511

Query: 565 ALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKA 624
           A    +   G     +T+T+ I       ++ + L + + +   G   D      +L   
Sbjct: 512 AAFRSLAARGLAADVVTWTSRIGAYARKKEYGQCLRVFEEMVDAGCYPDAGTAKVLLAAC 571

Query: 625 CEKGRIDVIEFIIEQMHQN 643
            ++ +++ +  I+  MH++
Sbjct: 572 SDERQVEQVTAIVRSMHKD 590



 Score = 45.1 bits (105), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 60/324 (18%), Positives = 123/324 (37%), Gaps = 56/324 (17%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           ++  +I+  G+      + ++  +M+S+G +P+  TY   + A   +       EV + M
Sbjct: 279 TYXLMINVYGKANQPMSSLRVFREMKSVGCKPNICTYTALVNAFAREGLCEKAEEVFEEM 338

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMD-KPER 413
           QQ   +P                ++    AL++  SR   P+  S   +  + M  +P+R
Sbjct: 339 QQAGHEP----------------DVYAYNALMEAYSRAGLPQGASEIFSLMEHMGCEPDR 382

Query: 414 A-----IKIFAKM--------------RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQ 454
           A     +  F +               +Q +RP ++++ LL S      A    GN+   
Sbjct: 383 ASYNILVDAFGRAGLHQEAEAAFQELKQQGMRPTMKSHMLLLS------AHARSGNV--- 433

Query: 455 VDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLG------ 508
                R   +   + ++ ++    ++  +L A G  G + ++ + F   +   G      
Sbjct: 434 ----ARCEEVMAQLHKSGLRPDTFALNAMLNAYGRAGRLDDMERLFAAMERGDGASAGAP 489

Query: 509 -TPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALV 567
            T TYN ++++   A    R    F+ +   G+  +  T+   I   +  + +     + 
Sbjct: 490 DTSTYNVLVNAYGRAGYLDRMEAAFRSLAARGLAADVVTWTSRIGAYARKKEYGQCLRVF 549

Query: 568 SMMVRDGFYPQTMTYTALIKILLD 591
             MV  G YP   T   L+    D
Sbjct: 550 EEMVDAGCYPDAGTAKVLLAACSD 573


>gi|115444451|ref|NP_001046005.1| Os02g0167200 [Oryza sativa Japonica Group]
 gi|113535536|dbj|BAF07919.1| Os02g0167200, partial [Oryza sativa Japonica Group]
          Length = 526

 Score = 87.0 bits (214), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 69/323 (21%), Positives = 146/323 (45%), Gaps = 20/323 (6%)

Query: 348 MEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDT 407
           +EVL +MQ+   +P + T + L   C KA ++  A A+ D+ISR  +   ++  L+    
Sbjct: 59  VEVLSLMQEAGFEPNEVTYSNLLASCIKARDVHSARAMFDKISR-PSVTTWNTLLSGYCQ 117

Query: 408 MDKPERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM 466
            ++ +  I++F +M+ Q ++PD  T  ++ S    +            +D  +++++  +
Sbjct: 118 EEQHQDTIELFRRMQHQNVQPDRTTLAVILSSCSKLGI----------LDFGRQVHSASV 167

Query: 467 DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESH 526
               +N       + ++    G  G+ R +     +  T      +N+++  L     + 
Sbjct: 168 RFLLHNDMFVASGLVDMYSKCGQIGIARSIF----NKMTERDVVCWNSIISGLTIHSLNK 223

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
            A + FKQM+  GI P  ++Y  MI+ CS +        + + +++DG+       +ALI
Sbjct: 224 EAFDFFKQMRENGIMPTESSYASMINSCSRLSSIPHGRQIHAQVMKDGYDQNVYVGSALI 283

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
            +    G+ D+A    D + ++    +++ +N ++    + G  D    + E M   + +
Sbjct: 284 DMYAKCGNMDDARLFFDTMMMK----NIVAWNEMIHGYAQNGLGDKAVELFEYMLTTEQK 339

Query: 647 PDPSTCHFVFSGYVNCGFHNSAM 669
           PD  T   V +G  + G  + AM
Sbjct: 340 PDAVTFIAVLTGCSHSGLVDKAM 362



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 86/466 (18%), Positives = 169/466 (36%), Gaps = 93/466 (19%)

Query: 283 LNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDR 342
             +LP + ++ W+   +I   G+  +   A +++  MQ  G +P+  TY   + + +  R
Sbjct: 31  FESLPSVTIVSWNI--LITGFGQEGSCAKAVEVLSLMQEAGFEPNEVTYSNLLASCIKAR 88

Query: 343 GL-------------------------------RNGMEVLKIMQQNNLKPQDSTIATLSV 371
            +                               ++ +E+ + MQ  N++P  +T+A +  
Sbjct: 89  DVHSARAMFDKISRPSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVILS 148

Query: 372 ECSKALELD-------------------LAEALLDQISRCT---------------NPKP 397
            CSK   LD                   +A  L+D  S+C                +   
Sbjct: 149 SCSKLGILDFGRQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNKMTERDVVC 208

Query: 398 FSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVD 456
           +++ ++        + A   F +MR+  + P   +Y  + +            +  S + 
Sbjct: 209 WNSIISGLTIHSLNKEAFDFFKQMRENGIMPTESSYASMIN----------SCSRLSSIP 258

Query: 457 SAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVL 516
             ++I+A  M    +   +   ++ ++    G     R     F D+        +N ++
Sbjct: 259 HGRQIHAQVMKDGYDQNVYVGSALIDMYAKCGNMDDAR----LFFDTMMMKNIVAWNEMI 314

Query: 517 HSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRD-GF 575
           H   +     +A+E+F+ M T    P+A T+  ++  CS       A A  + M    G 
Sbjct: 315 HGYAQNGLGDKAVELFEYMLTTEQKPDAVTFIAVLTGCSHSGLVDKAMAFFNSMENSYGI 374

Query: 576 YPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIP--HDVLLYNTILKKACEKGRIDVI 633
            P    YT LI  L   G F E   L+  +  +  P   +VLL   ++    E G+    
Sbjct: 375 IPLAEHYTCLIDALGRAGRFVEVEALIHKMPCKDDPIIWEVLLAACVVHHNAELGK---- 430

Query: 634 EFIIEQMHQNKVQP-DPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678
                  H  ++ P +PS    + + Y + G H  A     ++S R
Sbjct: 431 ---CAAEHLFRIDPKNPSPYVLLSNIYASLGRHGDASAVRALMSNR 473



 Score = 47.8 bits (112), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 66/146 (45%), Gaps = 10/146 (6%)

Query: 513 NTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVR 572
           N+++    +  E   A+++F+ + +  I     ++NI+I           A  ++S+M  
Sbjct: 12  NSLIDMYTKCVEMDEAVKVFESLPSVTI----VSWNILITGFGQEGSCAKAVEVLSLMQE 67

Query: 573 DGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKAC-EKGRID 631
            GF P  +TY+ L+   +   D   A  + D +S       V  +NT+L   C E+   D
Sbjct: 68  AGFEPNEVTYSNLLASCIKARDVHSARAMFDKISRP----SVTTWNTLLSGYCQEEQHQD 123

Query: 632 VIEFIIEQMHQNKVQPDPSTCHFVFS 657
            IE      HQN VQPD +T   + S
Sbjct: 124 TIELFRRMQHQN-VQPDRTTLAVILS 148


>gi|414864980|tpg|DAA43537.1| TPA: hypothetical protein ZEAMMB73_764503 [Zea mays]
          Length = 649

 Score = 87.0 bits (214), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 141/671 (21%), Positives = 243/671 (36%), Gaps = 107/671 (15%)

Query: 16  SFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRG--------E 67
           S C+S   +  RR  A++ E+  +L  +        S   Q Q+ D L R         E
Sbjct: 54  SECQSLLLRMSRRRGASRREIVSSLLAS--------SPTPQPQVFDLLIRTYTQSRKPRE 105

Query: 68  RSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLL 127
              A  LLL+      +  ++    +L   +R+  P    E +R++   +  +N     +
Sbjct: 106 AFEAFRLLLDHRVPVPASASNALLAVL---SRAGWPHLAQEAYRLVLSSDSEVNAYTLNI 162

Query: 128 MMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSR 187
           M+ + CK    + A  +I  + E+  ++P +  +N  + A  +   +  A   +D M +R
Sbjct: 163 MVHSYCKTLEFDGADTVISEM-EKRCVFPDVVTHNVLIDARFRAGDVDAAIALVDSMANR 221

Query: 188 MVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK-HYSLSIFSLRKFVWSFTRLRDLKSA 246
            +    VTY  +LK     +      E++    +   +  + S    +  F R+ ++K A
Sbjct: 222 GLKPGIVTYNSVLKGLCKHRRFDKAKEVFRTMDQCSVAPDVRSFNILIGGFCRVGEVKEA 281

Query: 247 ---YETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHAC 303
              Y+ +QH                    R    D+               SFS +I   
Sbjct: 282 VKFYKEMQH--------------------RYVTPDV--------------VSFSCLIGLF 307

Query: 304 GRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQD 363
            R      A   + +M+ LGL P    Y   I        +   + V   M      P  
Sbjct: 308 SRRGEMDHAGAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGFGCLPDV 367

Query: 364 STIATLSVECSKALELDLAEALLDQIS-RCTNPK--PFSAFLAACDTMDKPERAIKIFAK 420
            T  TL     K   L  AE LL+++  R   P    F+  +         E A+++F  
Sbjct: 368 VTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTTLIHGYCRQGNFENALQLFDT 427

Query: 421 M-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHIS 479
           + RQ+LRPD+ TY  L               M  + D AK  N +  DM    I  +HI 
Sbjct: 428 LLRQRLRPDVVTYNSLID------------GMCRKGDLAK-ANELWDDMHAREILPNHI- 473

Query: 480 MKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCG 539
                                          TY+ ++ S  E  +   A     +M   G
Sbjct: 474 -------------------------------TYSILIDSHCEKGQVEDAFGFLDEMVKKG 502

Query: 540 IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEAL 599
             PN  TYN +I         K     +  M +D  +P  +T+  LI   +   +   A 
Sbjct: 503 NLPNIRTYNSIIKGYCRSGNVKKGQQFLQKMRQDNVFPDLITFNTLIHGYIKEENMHGAF 562

Query: 600 NLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
           N+ +++  E +  D + YN I+    E+G +     + + M  + ++PD  T   + +G+
Sbjct: 563 NVFNIMEKEMVRPDAVTYNMIINGFSEQGNMQDAGRVFKGMGDSGIEPDRYTYMSLINGH 622

Query: 660 VNCGFHNSAME 670
           V  G    A +
Sbjct: 623 VTAGNSKQAFQ 633



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 86/193 (44%)

Query: 495 ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCC 554
           E  +   D + P+     N +L  L  A   H A E ++ + +     NA T NIM+   
Sbjct: 108 EAFRLLLDHRVPVPASASNALLAVLSRAGWPHLAQEAYRLVLSSDSEVNAYTLNIMVHSY 167

Query: 555 SIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDV 614
                F  A  ++S M +   +P  +T+  LI      GD D A+ L+D ++  G+   +
Sbjct: 168 CKTLEFDGADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIALVDSMANRGLKPGI 227

Query: 615 LLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQV 674
           + YN++LK  C+  R D  + +   M Q  V PD  + + +  G+   G    A++  + 
Sbjct: 228 VTYNSVLKGLCKHRRFDKAKEVFRTMDQCSVAPDVRSFNILIGGFCRVGEVKEAVKFYKE 287

Query: 675 LSMRMLCEEVSTL 687
           +  R +  +V + 
Sbjct: 288 MQHRYVTPDVVSF 300



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 85/407 (20%), Positives = 156/407 (38%), Gaps = 26/407 (6%)

Query: 293 RWSFSDV------IHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRN 346
           R  F DV      I A  R  +   A  L+  M + GL+P   TY+  ++ +   R    
Sbjct: 186 RCVFPDVVTHNVLIDARFRAGDVDAAIALVDSMANRGLKPGIVTYNSVLKGLCKHRRFDK 245

Query: 347 GMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQIS-RCTNPK--PFSAFLA 403
             EV + M Q ++ P   +   L     +  E+  A     ++  R   P    FS  + 
Sbjct: 246 AKEVFRTMDQCSVAPDVRSFNILIGGFCRVGEVKEAVKFYKEMQHRYVTPDVVSFSCLIG 305

Query: 404 ACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQ-VDSAKRI 461
                 + + A     +M+   L PD   Y ++   F    +  E   +  + V      
Sbjct: 306 LFSRRGEMDHAGAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGFGCLP 365

Query: 462 NAIEMDMARNNI--QHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSL 519
           + +  +   N +  QH  +  + LL  +   G+  +L              T+ T++H  
Sbjct: 366 DVVTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLC-------------TFTTLIHGY 412

Query: 520 VEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQT 579
                   A+++F  +    + P+  TYN +ID          A+ L   M      P  
Sbjct: 413 CRQGNFENALQLFDTLLRQRLRPDVVTYNSLIDGMCRKGDLAKANELWDDMHAREILPNH 472

Query: 580 MTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQ 639
           +TY+ LI    + G  ++A   LD +  +G   ++  YN+I+K  C  G +   +  +++
Sbjct: 473 ITYSILIDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNSIIKGYCRSGNVKKGQQFLQK 532

Query: 640 MHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           M Q+ V PD  T + +  GY+     + A     ++   M+  +  T
Sbjct: 533 MRQDNVFPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVRPDAVT 579



 Score = 42.0 bits (97), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 48/256 (18%), Positives = 101/256 (39%), Gaps = 6/256 (2%)

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
           MEE+ +  +   +  ++   C+ G  E A  L   L  R  + P +  YNS +    +  
Sbjct: 393 MEERGVTPDLCTFTTLIHGYCRQGNFENALQLFDTL-LRQRLRPDVVTYNSLIDGMCRKG 451

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSL-SIFSLR 231
            +  AN   D M +R +  N +TY+ L+     +  +       ++ +K  +L +I +  
Sbjct: 452 DLAKANELWDDMHAREILPNHITYSILIDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYN 511

Query: 232 KFVWSFTRLRDLKSAYETLQHMVALAMMGKLY-INRTSEGRLRSSRLDIPIPLNALPVMK 290
             +  + R  ++K   + LQ M    +   L   N    G ++   +     +  +   +
Sbjct: 512 SIIKGYCRSGNVKKGQQFLQKMRQDNVFPDLITFNTLIHGYIKEENMHGAFNVFNIMEKE 571

Query: 291 VLR---WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNG 347
           ++R    +++ +I+      N   A ++   M   G++P  +TY   I   V+    +  
Sbjct: 572 MVRPDAVTYNMIINGFSEQGNMQDAGRVFKGMGDSGIEPDRYTYMSLINGHVTAGNSKQA 631

Query: 348 MEVLKIMQQNNLKPQD 363
            ++   M      P D
Sbjct: 632 FQLHDEMIHRGFAPDD 647


>gi|15231438|ref|NP_187385.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75204605|sp|Q9SFV9.1|PP218_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g07290, mitochondrial; Flags: Precursor
 gi|6642636|gb|AAF20217.1|AC012395_4 hypothetical protein [Arabidopsis thaliana]
 gi|332641002|gb|AEE74523.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 880

 Score = 87.0 bits (214), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 81/374 (21%), Positives = 156/374 (41%), Gaps = 20/374 (5%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTI-ATLS 370
           A  L  +M   G +P+ HTY   I  +  D  +     V + M ++ + P   T  A ++
Sbjct: 320 AFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALIN 379

Query: 371 VECSKALELDLAEALLDQISRCTNP--KPFSAFLAACDTMDKPERAIKIFAKM-RQKLRP 427
             C     +   E L     R   P  + F+  +     + KP +A+ +  +M    L P
Sbjct: 380 GYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSP 439

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL 487
           DI +Y +L      ++    EG+M +       +N  +       I+   ++   ++ A 
Sbjct: 440 DIVSYNVL------IDGLCREGHMNTAYKLLSSMNCFD-------IEPDCLTFTAIINAF 486

Query: 488 GAEG---MIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNA 544
             +G   +    +         L   T  T++  + +  ++  A+ I + +    I    
Sbjct: 487 CKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCKVGKTRDALFILETLVKMRILTTP 546

Query: 545 ATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDL 604
            + N+++D  S     K   A++  + + G  P  +TYT L+  L+  GD   +  +L+L
Sbjct: 547 HSLNVILDMLSKGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDITGSFRILEL 606

Query: 605 VSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGF 664
           + L G   +V  Y  I+   C+ GR++  E ++  M  + V P+  T   +  GYVN G 
Sbjct: 607 MKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGK 666

Query: 665 HNSAMEALQVLSMR 678
            + A+E ++ +  R
Sbjct: 667 LDRALETVRAMVER 680



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 77/164 (46%), Gaps = 3/164 (1%)

Query: 528 AMEIFKQM-KTCGIPPNAATYNIMI-DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
           A+++F  M K     PN+ +Y+I+I   C + R  + A  L   M   G  P T TYT L
Sbjct: 249 ALKVFDVMSKEVTCAPNSVSYSILIHGLCEVGR-LEEAFGLKDQMGEKGCQPSTRTYTVL 307

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           IK L D G  D+A NL D +   G   +V  Y  ++   C  G+I+    +  +M ++++
Sbjct: 308 IKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRI 367

Query: 646 QPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEE 689
            P   T + + +GY   G    A E L V+  R     V T  E
Sbjct: 368 FPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNE 411



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 74/164 (45%)

Query: 509 TPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVS 568
           T TY  ++ +L +     +A  +F +M   G  PN  TY ++ID        + A+ +  
Sbjct: 301 TRTYTVLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCR 360

Query: 569 MMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
            MV+D  +P  +TY ALI      G    A  LL ++       +V  +N +++  C  G
Sbjct: 361 KMVKDRIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVG 420

Query: 629 RIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEAL 672
           +      ++++M  N + PD  + + +  G    G  N+A + L
Sbjct: 421 KPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTAYKLL 464



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 67/163 (41%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           +Y+ ++H L E      A  +  QM   G  P+  TY ++I           A  L   M
Sbjct: 268 SYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEM 327

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           +  G  P   TYT LI  L   G  +EA  +   +  + I   V+ YN ++   C+ GR+
Sbjct: 328 IPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALINGYCKDGRV 387

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
                ++  M +   +P+  T + +  G    G    A+  L+
Sbjct: 388 VPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLK 430



 Score = 42.7 bits (99), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 103/513 (20%), Positives = 188/513 (36%), Gaps = 40/513 (7%)

Query: 59  IVDALCRGERSRASHL----LLNLGHAHHSLGADDFFHILNYC--ARSPDPLFVMETWRM 112
           IV+ALC+   + A+ +    +L +G    S        +L +C      D L V +   M
Sbjct: 201 IVNALCKNGYTEAAEMFMSKILKIGFVLDSHIGTSL--LLGFCRGLNLRDALKVFDV--M 256

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
            +E     N+  Y +++  LC+ G LEEA  L   +GE+ G  P    Y   + A     
Sbjct: 257 SKEVTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEK-GCQPSTRTYTVLIKALCDRG 315

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSL-SIFSLR 231
            +  A    D M  R    N  TYT L+        +   + +    +K     S+ +  
Sbjct: 316 LIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYN 375

Query: 232 KFVWSFTRLRDLKSAYETLQHMVALAMMGKL-YINRTSEGRLRSSRLDIPIPLNALPVMK 290
             +  + +   +  A+E L  M   A    +   N   EG  R  +     P  A+ ++K
Sbjct: 376 ALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGK-----PYKAVHLLK 430

Query: 291 VLR--------WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDR 342
            +          S++ +I    R  +   A +L+  M    ++P   T+   I A     
Sbjct: 431 RMLDNGLSPDIVSYNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTFTAIINAFCKQG 490

Query: 343 GLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFS 399
                   L +M +  +   + T  TL     K  +   A  +L+ + +    T P   +
Sbjct: 491 KADVASAFLGLMLRKGISLDEVTGTTLIDGVCKVGKTRDALFILETLVKMRILTTPHSLN 550

Query: 400 AFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSA 458
             L       K +  + +  K+ +  L P + TY  L      V+     G++     S 
Sbjct: 551 VILDMLSKGCKVKEELAMLGKINKLGLVPSVVTYTTL------VDGLIRSGDI---TGSF 601

Query: 459 KRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHS 518
           + +  +++     N+ + +  + N L   G      +L+    DS       TY  ++  
Sbjct: 602 RILELMKLSGCLPNV-YPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKG 660

Query: 519 LVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI 551
            V   +  RA+E  + M   G   N   Y+ ++
Sbjct: 661 YVNNGKLDRALETVRAMVERGYELNDRIYSSLL 693


>gi|356562834|ref|XP_003549673.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Glycine max]
          Length = 747

 Score = 87.0 bits (214), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 99/419 (23%), Positives = 170/419 (40%), Gaps = 61/419 (14%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVS----DRGLRNGM-- 348
           +F+ ++H   +      +E+L+ ++   G+ P+  T++ F++ +      DR +RN    
Sbjct: 218 AFNKLVHVLCKKGLVFESERLLGKVLKRGVCPNLFTFNIFVQGLCREGALDRAVRNSRVV 277

Query: 349 ---EVLKIMQQNNLKPQDSTI-ATLSVECSKALELDLAEALLDQISRCTNPKPF---SAF 401
              E L+ M     +P D T  + +   C K +  D    L D + +   P  F   S  
Sbjct: 278 EAEEYLRKMVNGGFEPDDLTYNSIIDGYCKKGMVQDANRVLKDAVFKGFKPDEFTYCSLI 337

Query: 402 LAACDTMDKPERAIKIFAK-MRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKR 460
              C   D P+RA+ +F   + + LRP I  Y  L      +    ++G +   +   + 
Sbjct: 338 NGFCKDGD-PDRAMAVFKDGLGKGLRPSIVLYNTL------IKGLSQQGLILPAL---QL 387

Query: 461 INAIEMDMARNNIQHSHISMKNLLKALG-------------AEGMIRELIQY------FC 501
           +N +  +    NI   ++ +  L K +G             A+G   ++  Y      +C
Sbjct: 388 MNEMAENGCLPNIWTYNLVINGLCK-MGCVSDASHLVDDAIAKGCPPDIFTYNTLIDGYC 446

Query: 502 -----DSKTPLG--------TP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAA 545
                DS T +         TP   TYNT+L+ L +A +S   MEIFK M+  G  PN  
Sbjct: 447 KQLKLDSATEMVNRMWSQGMTPDVITYNTLLNGLCKAGKSEEVMEIFKAMEEKGCTPNII 506

Query: 546 TYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLV 605
           TYNI++D     +    A  L+  M   G  P  +++  L       GD D A  L   +
Sbjct: 507 TYNIIVDSLCKAKKVNEAVDLLGEMKSKGLKPDVVSFGTLFTGFCKIGDIDGAYQLFRRM 566

Query: 606 SLE-GIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
             +  + H    YN I+    E+  +++   +   M  +   PD  T   V  G+   G
Sbjct: 567 EKQYDVCHTTATYNIIVSAFSEQLNMNMAMKLFSVMKNSGCDPDNYTYRVVIDGFCKMG 625



 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 77/370 (20%), Positives = 154/370 (41%), Gaps = 9/370 (2%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A ++ ++M+  G+Q   +TY   I++          + +L+ M +           T+  
Sbjct: 130 AHKVYMRMRDRGVQSDVYTYTIRIKSFCKTARPYAALRLLRNMPELGCDSNAVAYCTVVA 189

Query: 372 ECSKALELDLAEALLDQ-ISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIR 430
               + E D A  L D+ ++RC  P    AF      + K     +    + + L+  + 
Sbjct: 190 GLYDSGEHDHARELFDEMLARCLCPD-VVAFNKLVHVLCKKGLVFESERLLGKVLKRGVC 248

Query: 431 TYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM--DMARNNIQHSHISMKNLLKALG 488
                F++F  V     EG +   V +++ + A E    M     +   ++  +++    
Sbjct: 249 PNLFTFNIF--VQGLCREGALDRAVRNSRVVEAEEYLRKMVNGGFEPDDLTYNSIIDGYC 306

Query: 489 AEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAA 545
            +GM+++  +   D+      P   TY ++++   +  +  RAM +FK     G+ P+  
Sbjct: 307 KKGMVQDANRVLKDAVFKGFKPDEFTYCSLINGFCKDGDPDRAMAVFKDGLGKGLRPSIV 366

Query: 546 TYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLV 605
            YN +I   S       A  L++ M  +G  P   TY  +I  L   G   +A +L+D  
Sbjct: 367 LYNTLIKGLSQQGLILPALQLMNEMAENGCLPNIWTYNLVINGLCKMGCVSDASHLVDDA 426

Query: 606 SLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFH 665
             +G P D+  YNT++   C++ ++D    ++ +M    + PD  T + + +G    G  
Sbjct: 427 IAKGCPPDIFTYNTLIDGYCKQLKLDSATEMVNRMWSQGMTPDVITYNTLLNGLCKAGKS 486

Query: 666 NSAMEALQVL 675
              ME  + +
Sbjct: 487 EEVMEIFKAM 496



 Score = 49.3 bits (116), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 50/240 (20%), Positives = 91/240 (37%), Gaps = 23/240 (9%)

Query: 448 EGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPL 507
           +G +   VD+ +R++    D +     HSH ++ N+L   G      ++     D     
Sbjct: 89  KGKVQEAVDTFERMDFYNCDPS----VHSHNAIMNILVEFGYHNQAHKVYMRMRDRGVQS 144

Query: 508 GTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKS----- 562
              TY   + S  +    + A+ + + M   G   NA  Y     C  +   + S     
Sbjct: 145 DVYTYTIRIKSFCKTARPYAALRLLRNMPELGCDSNAVAY-----CTVVAGLYDSGEHDH 199

Query: 563 ASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILK 622
           A  L   M+     P  + +  L+ +L   G   E+  LL  V   G+  ++  +N  ++
Sbjct: 200 ARELFDEMLARCLCPDVVAFNKLVHVLCKKGLVFESERLLGKVLKRGVCPNLFTFNIFVQ 259

Query: 623 KACEKGRID-------VIEF--IIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
             C +G +D       V+E    + +M     +PD  T + +  GY   G    A   L+
Sbjct: 260 GLCREGALDRAVRNSRVVEAEEYLRKMVNGGFEPDDLTYNSIIDGYCKKGMVQDANRVLK 319



 Score = 48.1 bits (113), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 84/406 (20%), Positives = 149/406 (36%), Gaps = 73/406 (17%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           AE+ + +M + G +P   TY+  I        +++   VLK       KP + T  +L  
Sbjct: 279 AEEYLRKMVNGGFEPDDLTYNSIIDGYCKKGMVQDANRVLKDAVFKGFKPDEFTYCSLIN 338

Query: 372 ECSKALELDLAEALL-DQISRCTNPKP--FSAFLAACDTMDKPERAIKIFAKMRQK-LRP 427
              K  + D A A+  D + +   P    ++  +           A+++  +M +    P
Sbjct: 339 GFCKDGDPDRAMAVFKDGLGKGLRPSIVLYNTLIKGLSQQGLILPALQLMNEMAENGCLP 398

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSA-----------------------KRINAI 464
           +I TY L+ +    +    +  ++   VD A                       K  +A 
Sbjct: 399 NIWTYNLVINGLCKMGCVSDASHL---VDDAIAKGCPPDIFTYNTLIDGYCKQLKLDSAT 455

Query: 465 EM--DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSL 519
           EM   M    +    I+   LL  L   G   E+++ F   +    TP   TYN ++ SL
Sbjct: 456 EMVNRMWSQGMTPDVITYNTLLNGLCKAGKSEEVMEIFKAMEEKGCTPNIITYNIIVDSL 515

Query: 520 VEAQESHRAMEIFKQMKTCGIPPNA----------------------------------- 544
            +A++ + A+++  +MK+ G+ P+                                    
Sbjct: 516 CKAKKVNEAVDLLGEMKSKGLKPDVVSFGTLFTGFCKIGDIDGAYQLFRRMEKQYDVCHT 575

Query: 545 -ATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALN-LL 602
            ATYNI++   S       A  L S+M   G  P   TY  +I      G+  +    LL
Sbjct: 576 TATYNIIVSAFSEQLNMNMAMKLFSVMKNSGCDPDNYTYRVVIDGFCKMGNITQGYKFLL 635

Query: 603 DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
           + +    IP  +  +  +L   C K ++     II  M Q  + P+
Sbjct: 636 ENMEKRFIP-SLTTFGRVLNCLCVKDKVHEAVGIIHLMLQKGIVPE 680



 Score = 46.6 bits (109), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 69/323 (21%), Positives = 119/323 (36%), Gaps = 78/323 (24%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A QLM +M   G  P+  TY+  I  +     + +   ++         P   T  TL  
Sbjct: 384 ALQLMNEMAENGCLPNIWTYNLVINGLCKMGCVSDASHLVDDAIAKGCPPDIFTYNTLID 443

Query: 372 ECSKALELDLAEALLDQI-SRCTNPK--PFSAFLAACDTMDKPERAIKIFAKMRQK-LRP 427
              K L+LD A  +++++ S+   P    ++  L       K E  ++IF  M +K   P
Sbjct: 444 GYCKQLKLDSATEMVNRMWSQGMTPDVITYNTLLNGLCKAGKSEEVMEIFKAMEEKGCTP 503

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDS---AKRIN-AIEM--DMARNNIQHSHISMK 481
           +I TY ++                   VDS   AK++N A+++  +M    ++   +S  
Sbjct: 504 NIITYNII-------------------VDSLCKAKKVNEAVDLLGEMKSKGLKPDVVSFG 544

Query: 482 NLLKALGAEGMIRELIQYF---------CDSKTPLGTPTYNTVLHSLVEAQESHRAMEIF 532
            L       G I    Q F         C +     T TYN ++ +  E    + AM++F
Sbjct: 545 TLFTGFCKIGDIDGAYQLFRRMEKQYDVCHT-----TATYNIIVSAFSEQLNMNMAMKLF 599

Query: 533 KQMKTCGIPPNAATYNIMID-----------------------------------CCSII 557
             MK  G  P+  TY ++ID                                   C  + 
Sbjct: 600 SVMKNSGCDPDNYTYRVVIDGFCKMGNITQGYKFLLENMEKRFIPSLTTFGRVLNCLCVK 659

Query: 558 RCFKSASALVSMMVRDGFYPQTM 580
                A  ++ +M++ G  P+T+
Sbjct: 660 DKVHEAVGIIHLMLQKGIVPETV 682


>gi|255547572|ref|XP_002514843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545894|gb|EEF47397.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 594

 Score = 87.0 bits (214), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 77/371 (20%), Positives = 158/371 (42%), Gaps = 20/371 (5%)

Query: 310 GLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL 369
           GL   ++ ++  LG +PS  T++  I  +  +  +   ME L  +     +P   T   +
Sbjct: 156 GLGFSVLGKIFKLGFKPSIITFNTLINGLCIEGRIVEAMEQLDYIMSRGYQPTVYTHTMI 215

Query: 370 SVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDK---PERAIKIFAKMRQ-KL 425
                K  +   A   + ++          ++    D++ K      A+ +F  MR   +
Sbjct: 216 VNGLCKIGKTSAAIVWMKKMVELDCEPEVVSYSIIIDSLCKNRLVNEAVDLFYHMRSIGI 275

Query: 426 RPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLK 485
            P + TY  L  ++G  N+              K+ + +  +M   N++   ++   L+ 
Sbjct: 276 SPTVVTYNSL--IYGMCNS-----------GQWKQASILFKEMLEWNMKPDVVTFSILVD 322

Query: 486 ALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPP 542
           AL  EG++ E +  F         P   TY++++H + ++     +  +  +M +  I P
Sbjct: 323 ALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKSSLWKESSTLLNEMLSRNIRP 382

Query: 543 NAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL 602
           +  T++I +D          A +++++M+  G  P  +TY +L+     +   DEA  + 
Sbjct: 383 DVVTFSIWVDVFCKKGMVSEAQSIINLMIERGLRPNVVTYNSLMDGYCLHSQMDEARKVF 442

Query: 603 DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNC 662
           D++  +G   DVL YN ++K  C+  RID  + + ++M    + P+  T   + SG    
Sbjct: 443 DIMVNKGCAPDVLSYNILIKGYCKSERIDEAKQLFDEMSHKGLTPNSITHTTLISGLCQA 502

Query: 663 GFHNSAMEALQ 673
           G   +A E  +
Sbjct: 503 GRPYAAKELFK 513



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 85/395 (21%), Positives = 150/395 (37%), Gaps = 51/395 (12%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           S+S +I +  + +    A  L   M+S+G+ P+  TY+  I  + +    +    + K M
Sbjct: 246 SYSIIIDSLCKNRLVNEAVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASILFKEM 305

Query: 355 QQNNLKPQDSTIATL-SVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPER 413
            + N+KP   T + L    C + + L+                                 
Sbjct: 306 LEWNMKPDVVTFSILVDALCKEGVVLE--------------------------------- 332

Query: 414 AIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNN 472
           A+ +F KM Q  + PDI TY  L       +   E   + ++             M   N
Sbjct: 333 ALSVFGKMIQIAMEPDIVTYSSLIHGVCKSSLWKESSTLLNE-------------MLSRN 379

Query: 473 IQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAM 529
           I+   ++    +     +GM+ E   +I    +        TYN+++       +   A 
Sbjct: 380 IRPDVVTFSIWVDVFCKKGMVSEAQSIINLMIERGLRPNVVTYNSLMDGYCLHSQMDEAR 439

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
           ++F  M   G  P+  +YNI+I           A  L   M   G  P ++T+T LI  L
Sbjct: 440 KVFDIMVNKGCAPDVLSYNILIKGYCKSERIDEAKQLFDEMSHKGLTPNSITHTTLISGL 499

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649
              G    A  L   +   G P D++ Y+T+L   C+ G +D    + E + +++++P+ 
Sbjct: 500 CQAGRPYAAKELFKKMGSHGCPPDLITYSTLLSGFCKHGHLDEALALFEALKKSQLKPNH 559

Query: 650 STCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEV 684
             C  +  G    G    A E    LS+  L  +V
Sbjct: 560 VICKILLGGMCKAGKLEDAKELFSSLSIEELQPDV 594



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/137 (21%), Positives = 63/137 (45%)

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           +N +L +LV  +     + I+++M+  G+  +  T  I+I+C   +       +++  + 
Sbjct: 107 FNQLLAALVRMKHYDSVVSIYRKMEFFGVSCSVYTLTILINCLCHLHLVGLGFSVLGKIF 166

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
           + GF P  +T+  LI  L   G   EA+  LD +   G    V  +  I+   C+ G+  
Sbjct: 167 KLGFKPSIITFNTLINGLCIEGRIVEAMEQLDYIMSRGYQPTVYTHTMIVNGLCKIGKTS 226

Query: 632 VIEFIIEQMHQNKVQPD 648
                +++M +   +P+
Sbjct: 227 AAIVWMKKMVELDCEPE 243


>gi|449461223|ref|XP_004148341.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Cucumis sativus]
 gi|449507064|ref|XP_004162923.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Cucumis sativus]
          Length = 844

 Score = 87.0 bits (214), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 103/547 (18%), Positives = 215/547 (39%), Gaps = 87/547 (15%)

Query: 237 FTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSF 296
           F R++D   +   + + V L + GK+       GR     LD+   +     ++   ++ 
Sbjct: 255 FERMKDCGLSPSLVTYNVMLDVYGKM-------GRSWDKILDLLDEMRN-EGLQFDEFTC 306

Query: 297 SDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQ 356
           S VI ACGR      A++  ++++S G +P + TY+  ++           + +LK M+ 
Sbjct: 307 STVISACGREGLINEAKEFFVELKSSGYEPGTVTYNALLQVFGKAGIYSEALNILKEMED 366

Query: 357 NNLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKPER 413
           NN      T   L     +A   +    ++D ++R     N   ++  + A     K  +
Sbjct: 367 NNCTLDSVTYNELVAAYVRAGFYEEGATVIDTMTRKGVMPNAVTYTTVINAYGRAGKEVK 426

Query: 414 AIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQV----------------- 455
           A+++F +M++    P++ TY  + +L G  +   E   + S +                 
Sbjct: 427 ALQLFNQMKKSGCVPNVCTYNSILALLGKKSRSEEMIKILSDMRINGCPPNRITWNTLLA 486

Query: 456 ---DSAKR--INAIEMDMARNNIQHSHISMKNLLKALG-------AEGMIRELIQYFCDS 503
              D  K   +N +  +M     +    +   L+ A G       A  M  E+++     
Sbjct: 487 MCGDKGKHKFVNHVFREMKNCGFEPGKDTFNTLISAYGRCGSELDAAKMYDEMMKA---G 543

Query: 504 KTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC---------- 553
            TP  T TYN +L++L    +   A  +   M+  G  PN  ++++M+ C          
Sbjct: 544 FTPCAT-TYNALLNALARRGDWKAAESVLLDMRNKGFKPNETSFSLMLHCYAKGGNVRGL 602

Query: 554 ----------------------------CSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
                                       C  +R  + A      ++++G+ P  + + ++
Sbjct: 603 ERIGKDIYDGQIFPSWVLLRTLILANFKCRAVRGMERA---FEELMKNGYKPDMVIFNSM 659

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           + I      ++ A  +LDL+   G+  D++ YN+++     +G     E I++ + ++  
Sbjct: 660 LSIFAKNNMYERAQKMLDLIRESGLQPDLVTYNSLMNMYARRGECWKAEEILKGLIKSGE 719

Query: 646 QPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDFEDL-ILAEDSE 704
            PD  + + +  G+   G    A+  +  ++ R +C  + T     S +    + AE  E
Sbjct: 720 SPDLVSYNTIIKGFCRQGLMQEAIRVMSEMTTRGICPCIFTYNTFVSGYAGRGMFAEVDE 779

Query: 705 AESRILQ 711
             S ++Q
Sbjct: 780 VISYMIQ 786



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 80/330 (24%), Positives = 138/330 (41%), Gaps = 54/330 (16%)

Query: 374 SKALEL-----------DLAEALLDQISRCTNPKPFSAFLAACDTM-------DKPERAI 415
           SKA+EL            +A  LLD+I        +S  + AC T+        K ++AI
Sbjct: 197 SKAVELMIRILGRESKYSIALKLLDKIP----IDKYSLDVRACTTILHAYSRNGKYKQAI 252

Query: 416 KIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQ 474
            +F +M+   L P + TY ++  ++G +   ++            +I  +  +M    +Q
Sbjct: 253 AMFERMKDCGLSPSLVTYNVMLDVYGKMGRSWD------------KILDLLDEMRNEGLQ 300

Query: 475 HSHISMKNLLKALGAEGMIRELIQYFCDSKTP---LGTPTYNTVLHSLVEAQESHRAMEI 531
               +   ++ A G EG+I E  ++F + K+     GT TYN +L    +A     A+ I
Sbjct: 301 FDEFTCSTVISACGREGLINEAKEFFVELKSSGYEPGTVTYNALLQVFGKAGIYSEALNI 360

Query: 532 FKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLD 591
            K+M+      ++ TYN ++        ++  + ++  M R G  P  +TYT +I     
Sbjct: 361 LKEMEDNNCTLDSVTYNELVAAYVRAGFYEEGATVIDTMTRKGVMPNAVTYTTVINAYGR 420

Query: 592 YGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
            G   +AL L + +   G   +V  YN+IL    +K R + +  I+  M  N   P+  T
Sbjct: 421 AGKEVKALQLFNQMKKSGCVPNVCTYNSILALLGKKSRSEEMIKILSDMRINGCPPNRIT 480

Query: 652 ----------------CHFVFSGYVNCGFH 665
                            + VF    NCGF 
Sbjct: 481 WNTLLAMCGDKGKHKFVNHVFREMKNCGFE 510



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 81/377 (21%), Positives = 147/377 (38%), Gaps = 25/377 (6%)

Query: 297 SDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVS-DRGLRNGMEVLKIMQ 355
           + ++HA  R      A  +  +M+  GL PS  TY+  +       R     +++L  M+
Sbjct: 236 TTILHAYSRNGKYKQAIAMFERMKDCGLSPSLVTYNVMLDVYGKMGRSWDKILDLLDEMR 295

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDKP 411
              L+  + T +T+   C +   ++ A+    ++ + +  +P    ++A L         
Sbjct: 296 NEGLQFDEFTCSTVISACGREGLINEAKEFFVEL-KSSGYEPGTVTYNALLQVFGKAGIY 354

Query: 412 ERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAP-YEEGNMFSQVDSAKRINAIEMDMA 469
             A+ I  +M       D  TY  L + +  V A  YEEG   + +D+          M 
Sbjct: 355 SEALNILKEMEDNNCTLDSVTYNELVAAY--VRAGFYEEGA--TVIDT----------MT 400

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESH 526
           R  +  + ++   ++ A G  G   + +Q F   K     P   TYN++L  L +   S 
Sbjct: 401 RKGVMPNAVTYTTVINAYGRAGKEVKALQLFNQMKKSGCVPNVCTYNSILALLGKKSRSE 460

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
             ++I   M+  G PPN  T+N ++  C      K  + +   M   GF P   T+  LI
Sbjct: 461 EMIKILSDMRINGCPPNRITWNTLLAMCGDKGKHKFVNHVFREMKNCGFEPGKDTFNTLI 520

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
                 G   +A  + D +   G       YN +L     +G     E ++  M     +
Sbjct: 521 SAYGRCGSELDAAKMYDEMMKAGFTPCATTYNALLNALARRGDWKAAESVLLDMRNKGFK 580

Query: 647 PDPSTCHFVFSGYVNCG 663
           P+ ++   +   Y   G
Sbjct: 581 PNETSFSLMLHCYAKGG 597



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/199 (23%), Positives = 82/199 (41%), Gaps = 39/199 (19%)

Query: 514 TVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID--------------------- 552
           T+LH+     +  +A+ +F++MK CG+ P+  TYN+M+D                     
Sbjct: 237 TILHAYSRNGKYKQAIAMFERMKDCGLSPSLVTYNVMLDVYGKMGRSWDKILDLLDEMRN 296

Query: 553 ---------CCSIIRC------FKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDE 597
                    C ++I           A      +   G+ P T+TY AL+++    G + E
Sbjct: 297 EGLQFDEFTCSTVISACGREGLINEAKEFFVELKSSGYEPGTVTYNALLQVFGKAGIYSE 356

Query: 598 ALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFS 657
           ALN+L  +       D + YN ++      G  +    +I+ M +  V P+  T   V +
Sbjct: 357 ALNILKEMEDNNCTLDSVTYNELVAAYVRAGFYEEGATVIDTMTRKGVMPNAVTYTTVIN 416

Query: 658 GYVNCGFHNSAMEALQVLS 676
            Y   G     ++ALQ+ +
Sbjct: 417 AYGRAG---KEVKALQLFN 432



 Score = 55.8 bits (133), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 61/318 (19%), Positives = 125/318 (39%), Gaps = 26/318 (8%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +F+ +I A GR  +   A ++  +M   G  P + TY+  + A+      +    VL  M
Sbjct: 515 TFNTLISAYGRCGSELDAAKMYDEMMKAGFTPCATTYNALLNALARRGDWKAAESVLLDM 574

Query: 355 QQNNLKPQDSTIATLSVEC-SKALELDLAEALLDQISRCTNPKPFSAFLA---------A 404
           +    KP +++  +L + C +K   +   E +   I    + + F +++           
Sbjct: 575 RNKGFKPNETSF-SLMLHCYAKGGNVRGLERIGKDI---YDGQIFPSWVLLRTLILANFK 630

Query: 405 CDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAI 464
           C  +   ERA +    M+   +PD+  +  + S+F   N       M   +    R + +
Sbjct: 631 CRAVRGMERAFEEL--MKNGYKPDMVIFNSMLSIFAKNNMYERAQKMLDLI----RESGL 684

Query: 465 EMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQE 524
           + D+   N      S+ N+    G      E+++    S       +YNT++        
Sbjct: 685 QPDLVTYN------SLMNMYARRGECWKAEEILKGLIKSGESPDLVSYNTIIKGFCRQGL 738

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
              A+ +  +M T GI P   TYN  +   +    F     ++S M++    P  +TY  
Sbjct: 739 MQEAIRVMSEMTTRGICPCIFTYNTFVSGYAGRGMFAEVDEVISYMIQKNCKPNELTYKI 798

Query: 585 LIKILLDYGDFDEALNLL 602
           ++        + +A++ +
Sbjct: 799 IVDGYCKARKYQDAMDFI 816


>gi|302799689|ref|XP_002981603.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
 gi|300150769|gb|EFJ17418.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
          Length = 609

 Score = 87.0 bits (214), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 115/551 (20%), Positives = 218/551 (39%), Gaps = 51/551 (9%)

Query: 112 MMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKL 171
           M + K +  +   Y  ++   CK G ++ A  ++  +  R G+ P +  Y S +    + 
Sbjct: 35  MRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGMAPDVVTYTSVVDGLCRD 94

Query: 172 HSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYS-LSIFSL 230
             M  A   +  M  + V  ++ T++ L+      + +    +++++ +     L   S 
Sbjct: 95  GKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSCRLDAVSS 154

Query: 231 RKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMK 290
              +    R R +  AYE  Q M                  +R      P  +       
Sbjct: 155 SALITGLCRERRIGEAYELFQEM-----------------EMREDGAWKPDVV------- 190

Query: 291 VLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEV 350
               +++ +I    ++ N   A +++  M+     P+  TY   +  +     L   +++
Sbjct: 191 ----TYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDL 246

Query: 351 LKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPK---PFSAFLAACDT 407
            + M      P   T  TL      A ++D A  L+D+++    P     ++A L     
Sbjct: 247 FRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPADTVSYNALLDGYCR 306

Query: 408 MDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM 466
           + + E A ++F +M  K   PD  TY  L   F N +   EE      +++ K    I+ 
Sbjct: 307 LGRIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCNASR-LEEARFL--LENMKTAAGIDP 363

Query: 467 DMARNNIQHSHIS-MKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQES 525
           D+   +I  +  S  K  ++A        E IQ            TY++++  L +A   
Sbjct: 364 DVVTYSIVVAGYSRAKRFVEAA-------EFIQEMIARNVAPNAVTYSSLIDGLCKAGRV 416

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMID-CCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
           + AME+ K +      P+  TY I+I+  C   R  + A  L+  MV     P   T+ +
Sbjct: 417 NHAMEVLKNVD----KPDVVTYTIVIEGLCGTDR-TEEALTLLEEMVNKRVEPSVGTFNS 471

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
           +I  L   GD DEA  LL  ++  G+   ++ Y T+L+     GR+++   + E M + K
Sbjct: 472 VIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAYELFEVMRR-K 530

Query: 645 VQPDPSTCHFV 655
            +   S  + V
Sbjct: 531 AKKSSSAANLV 541



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 83/390 (21%), Positives = 162/390 (41%), Gaps = 35/390 (8%)

Query: 324 LQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQN-NLKPQDSTIATLSVECSKALELDLA 382
           + P+  TY+  +  +   R      EVLK M+   ++ P   T +T+     K  E+D A
Sbjct: 5   VAPNERTYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRA 64

Query: 383 -EALLDQISRCTNPKPFSAFLAACDTM---DKPERAIKIFAKMRQK-LRPDIRTYELLFS 437
            E L + ++R         + +  D +    K +RA ++  +M+ K + PD  T+  L +
Sbjct: 65  CEILREMVTRDGMAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALIT 124

Query: 438 LFGNVNAPYEEGNMFSQV-DSAKRINAI-----------------------EMDMARNNI 473
            + N     E   ++ ++  S+ R++A+                       EM+M  +  
Sbjct: 125 GWCNARKVDEALKLYKEILTSSCRLDAVSSSALITGLCRERRIGEAYELFQEMEMREDGA 184

Query: 474 -QHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAM 529
            +   ++   L+      G + + ++     +     P   TY+++LH L +A +  +A+
Sbjct: 185 WKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQAL 244

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
           ++F++M + G  PN  TY  +I          +A  L+  M        T++Y AL+   
Sbjct: 245 DLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPADTVSYNALLDGY 304

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK-VQPD 648
              G  +EA  L   ++ +    D + Y  +++  C   R++   F++E M     + PD
Sbjct: 305 CRLGRIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPD 364

Query: 649 PSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678
             T   V +GY        A E +Q +  R
Sbjct: 365 VVTYSIVVAGYSRAKRFVEAAEFIQEMIAR 394



 Score = 73.2 bits (178), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 123/570 (21%), Positives = 209/570 (36%), Gaps = 92/570 (16%)

Query: 118 IGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHA 177
           +  N + Y +++  LCK     +A  ++  + +   + P L  Y++ +    K   M  A
Sbjct: 5   VAPNERTYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRA 64

Query: 178 NLCLDLMDSR-MVGKNEVTYTELLK-LAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVW 235
              L  M +R  +  + VTYT ++  L    K   A   + E  +K      F+    + 
Sbjct: 65  CEILREMVTRDGMAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALIT 124

Query: 236 SFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWS 295
            +   R +  A              KLY     E    S RLD                S
Sbjct: 125 GWCNARKVDEAL-------------KLY----KEILTSSCRLDA--------------VS 153

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQ---SLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
            S +I    R +  G A +L  +M+       +P   TY   I        L   M++L 
Sbjct: 154 SSALITGLCRERRIGEAYELFQEMEMREDGAWKPDVVTYTALIDGFCKSGNLEKAMKMLG 213

Query: 353 IMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPE 412
           +M+     P   T ++L     KA +LD                                
Sbjct: 214 VMEGRKCVPNVVTYSSLLHGLCKAGDLD-------------------------------- 241

Query: 413 RAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMD-MAR 470
           +A+ +F +M  K   P++ TY    +L   + A +       +VD+A+ +    MD M  
Sbjct: 242 QALDLFRRMTSKGCVPNVVTYT---TLIHGLCAAH-------KVDAARLL----MDEMTA 287

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHR 527
                  +S   LL      G I E  Q F +       P   TY  ++     A     
Sbjct: 288 TCCPADTVSYNALLDGYCRLGRIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCNASRLEE 347

Query: 528 AMEIFKQMKTC-GIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
           A  + + MKT  GI P+  TY+I++   S  + F  A+  +  M+     P  +TY++LI
Sbjct: 348 ARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLI 407

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
             L   G  + A+ +L  V       DV+ Y  +++  C   R +    ++E+M   +V+
Sbjct: 408 DGLCKAGRVNHAMEVLKNVD----KPDVVTYTIVIEGLCGTDRTEEALTLLEEMVNKRVE 463

Query: 647 PDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
           P   T + V       G  + A + L  ++
Sbjct: 464 PSVGTFNSVIGALCRLGDMDEAWKLLVAMA 493



 Score = 43.5 bits (101), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 81/362 (22%), Positives = 144/362 (39%), Gaps = 33/362 (9%)

Query: 108 ETWRMMEEKEIGL---NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSF 164
           E ++ ME +E G    +   Y  ++   CK G LE+A  ++  +  R  + P +  Y+S 
Sbjct: 172 ELFQEMEMREDGAWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCV-PNVVTYSSL 230

Query: 165 LGACAKLHSMVHANLCLDL---MDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK 221
           L    K   +  A   LDL   M S+    N VTYT L+        + A   + ++   
Sbjct: 231 LHGLCKAGDLDQA---LDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTA 287

Query: 222 HYSLS-IFSLRKFVWSFTRLRDLKSAYETLQHMVALAMM-GKLYINRTSEGRLRSSRLDI 279
               +   S    +  + RL  ++ A +  + M A + +  ++       G   +SRL+ 
Sbjct: 288 TCCPADTVSYNALLDGYCRLGRIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCNASRLEE 347

Query: 280 PIPLNALPVMKVLRW------SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDG 333
              L  L  MK          ++S V+    R +    A + + +M +  + P++ TY  
Sbjct: 348 ARFL--LENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSS 405

Query: 334 FIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVE--CSKALELDLAEALLDQISR 391
            I  +     + + MEVLK     N+   D    T+ +E  C      +    L + +++
Sbjct: 406 LIDGLCKAGRVNHAMEVLK-----NVDKPDVVTYTIVIEGLCGTDRTEEALTLLEEMVNK 460

Query: 392 CTNPK--PFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELL---FSLFGNVNAP 445
              P    F++ + A   +   + A K+   M    L P + TY  L   FS  G +   
Sbjct: 461 RVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIA 520

Query: 446 YE 447
           YE
Sbjct: 521 YE 522


>gi|242074832|ref|XP_002447352.1| hypothetical protein SORBIDRAFT_06g033480 [Sorghum bicolor]
 gi|241938535|gb|EES11680.1| hypothetical protein SORBIDRAFT_06g033480 [Sorghum bicolor]
          Length = 888

 Score = 87.0 bits (214), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 58/248 (23%), Positives = 115/248 (46%), Gaps = 12/248 (4%)

Query: 429 IRTYELLFSLFGNVNAPYEEGNMFSQVDSA-KRINAIEMDMARNNIQHSHISMKNLLKAL 487
           + TY +L + +G  N       +F +  +    +N I      +NI H+H    N+ +A 
Sbjct: 323 VVTYSILIAGYGKTNDAESADKLFKEAKTKLDNLNGI----IYSNIIHAHCQSGNMDRA- 377

Query: 488 GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATY 547
             E ++RE+ +   D+   +    Y++++H    AQ+  + + +F+++K CG  P+  +Y
Sbjct: 378 --EELVREMEEDGIDAPIDV----YHSMMHGYTVAQDEKKCLIVFERLKECGFRPSIISY 431

Query: 548 NIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSL 607
             +I+    I     A A+   M   G      TY+ LI   +   DF  A ++ + +  
Sbjct: 432 GCLINLYVKIGKVPKALAVSKEMESHGIKHNNKTYSMLINGFIHLHDFANAFSIFEDMIK 491

Query: 608 EGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNS 667
            G+  D  +YN +++  C+ G +D    I E+M + ++QP   T   +  G+   G    
Sbjct: 492 SGLQPDRAIYNLLVEAFCKMGNMDRAIRIFERMKKERMQPSNRTFRPIIEGFAVAGDMKR 551

Query: 668 AMEALQVL 675
           A++ L ++
Sbjct: 552 ALDTLDLM 559



 Score = 82.8 bits (203), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 77/374 (20%), Positives = 151/374 (40%), Gaps = 24/374 (6%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           +S++IHA  ++ N   AE+L+ +M+  G+      Y   +      +  +  + V + ++
Sbjct: 361 YSNIIHAHCQSGNMDRAEELVREMEEDGIDAPIDVYHSMMHGYTVAQDEKKCLIVFERLK 420

Query: 356 QNNLKP---QDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPE 412
           +   +P       +  L V+  K  +       ++      N K +S  +     +    
Sbjct: 421 ECGFRPSIISYGCLINLYVKIGKVPKALAVSKEMESHGIKHNNKTYSMLINGFIHLHDFA 480

Query: 413 RAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471
            A  IF  M +  L+PD   Y LL   F  +      GNM    D A RI      M + 
Sbjct: 481 NAFSIFEDMIKSGLQPDRAIYNLLVEAFCKM------GNM----DRAIRIFE---RMKKE 527

Query: 472 NIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRA 528
            +Q S+ + + +++     G ++  +      +     P   TYN ++H L+   +  RA
Sbjct: 528 RMQPSNRTFRPIIEGFAVAGDMKRALDTLDLMRRSGCAPTVMTYNALIHGLIRKHQVERA 587

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
           + +  +M   GI PN  TY I++   +       A    + +   G       Y  L++ 
Sbjct: 588 VSVLDKMSIAGIAPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRA 647

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
               G    AL +   +S + IP +  +YN ++     +G +     +++QM ++ + P+
Sbjct: 648 CCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAADLMKQMKEDGIPPN 707

Query: 649 PSTCHFVFSGYVNC 662
             T    F+ Y+N 
Sbjct: 708 IHT----FTSYINA 717



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 74/366 (20%), Positives = 148/366 (40%), Gaps = 26/366 (7%)

Query: 318 QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKAL 377
           +++  G +PS  +Y   I   V    +   + V K M+ + +K  + T + L    +  +
Sbjct: 418 RLKECGFRPSIISYGCLINLYVKIGKVPKALAVSKEMESHGIKHNNKTYSML---INGFI 474

Query: 378 EL-DLAEALL---DQISRCTNPKP--FSAFLAACDTMDKPERAIKIFAKMR-QKLRPDIR 430
            L D A A     D I     P    ++  + A   M   +RAI+IF +M+ ++++P  R
Sbjct: 475 HLHDFANAFSIFEDMIKSGLQPDRAIYNLLVEAFCKMGNMDRAIRIFERMKKERMQPSNR 534

Query: 431 TYELLFSLFGNVNAPYEEGNMFSQVDS---AKRINAIEMDMARNNIQHSHISMKNLLKAL 487
           T+  +   F         G+M   +D+    +R       M  N + H  I    + +A+
Sbjct: 535 TFRPIIEGFAVA------GDMKRALDTLDLMRRSGCAPTVMTYNALIHGLIRKHQVERAV 588

Query: 488 GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATY 547
                   ++     +       TY  ++     + +  +A E F ++K  G+  +   Y
Sbjct: 589 S-------VLDKMSIAGIAPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIY 641

Query: 548 NIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSL 607
             ++  C      +SA A+   M        T  Y  LI      GD  EA +L+  +  
Sbjct: 642 ETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAADLMKQMKE 701

Query: 608 EGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNS 667
           +GIP ++  + + +   C+ G +   E +I++M    ++P+  T   +  G+      + 
Sbjct: 702 DGIPPNIHTFTSYINACCKAGDMQRAENVIQEMADVGLKPNVKTFTTLIKGWAKVSLPDR 761

Query: 668 AMEALQ 673
           A++  +
Sbjct: 762 ALKCFE 767



 Score = 55.8 bits (133), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 107/533 (20%), Positives = 194/533 (36%), Gaps = 85/533 (15%)

Query: 111 RMMEEKEIGLNNKCYLLMMQALCKGGYL---EEASNLIYFLGERY---GIYPILPVYNSF 164
           R MEE  I      Y  MM      GY    +E   LI F  ER    G  P +  Y   
Sbjct: 382 REMEEDGIDAPIDVYHSMMH-----GYTVAQDEKKCLIVF--ERLKECGFRPSIISYGCL 434

Query: 165 LGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK--- 221
           +    K+  +  A      M+S  +  N  TY+ L+   +   + +    I+ED IK   
Sbjct: 435 INLYVKIGKVPKALAVSKEMESHGIKHNNKTYSMLINGFIHLHDFANAFSIFEDMIKSGL 494

Query: 222 HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRL--DI 279
               +I++L   V +F ++ ++  A    + M    M      NRT    +    +  D+
Sbjct: 495 QPDRAIYNL--LVEAFCKMGNMDRAIRIFERMKKERMQPS---NRTFRPIIEGFAVAGDM 549

Query: 280 PIPLNALPVMK-----VLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGF 334
              L+ L +M+         +++ +IH   R      A  ++ +M   G+ P+ HTY   
Sbjct: 550 KRALDTLDLMRRSGCAPTVMTYNALIHGLIRKHQVERAVSVLDKMSIAGIAPNEHTYTII 609

Query: 335 IRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTN 394
           +R   +   +    E    ++++ LK       TL   C K+  +  A A+  ++S    
Sbjct: 610 MRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMS---- 665

Query: 395 PKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQ 454
                                       QK+  +   Y +L   +      +E  ++  Q
Sbjct: 666 ---------------------------FQKIPRNTFIYNILIDGWARRGDVWEAADLMKQ 698

Query: 455 VDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNT 514
                    ++ D    NI H+  S  N     G       +IQ   D        T+ T
Sbjct: 699 ---------MKEDGIPPNI-HTFTSYINACCKAGDMQRAENVIQEMADVGLKPNVKTFTT 748

Query: 515 VLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDG 574
           ++    +     RA++ F++MK+ G+ P+ A Y+ ++            S L    V +G
Sbjct: 749 LIKGWAKVSLPDRALKCFEEMKSAGLKPDEAAYHCLV-----------TSLLSRATVMEG 797

Query: 575 FYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEK 627
                 TYT ++ +  +  + D  ++L   V      H++      L +A ++
Sbjct: 798 -----STYTGILSVCREMFENDLTVDLRTAVHWSKWLHEIERTGGALTEALQR 845



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 66/167 (39%), Gaps = 30/167 (17%)

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
           + H A   F+ M+  GI PNA  +  ++   ++ R  + A + V  M  +G     +TY+
Sbjct: 268 DKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMRGALSCVEEMKSEGLEMTVVTYS 327

Query: 584 ALIKILLDYGD-------FDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFI 636
            LI       D       F EA   LD  +L GI     +Y+ I+   C+ G +D  E +
Sbjct: 328 ILIAGYGKTNDAESADKLFKEAKTKLD--NLNGI-----IYSNIIHAHCQSGNMDRAEEL 380

Query: 637 IEQ----------------MHQNKVQPDPSTCHFVFSGYVNCGFHNS 667
           + +                MH   V  D   C  VF     CGF  S
Sbjct: 381 VREMEEDGIDAPIDVYHSMMHGYTVAQDEKKCLIVFERLKECGFRPS 427


>gi|224059754|ref|XP_002299984.1| predicted protein [Populus trichocarpa]
 gi|222847242|gb|EEE84789.1| predicted protein [Populus trichocarpa]
          Length = 610

 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 83/356 (23%), Positives = 143/356 (40%), Gaps = 20/356 (5%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A ++M  M   GL+PS  TY+  I  +           +L  M    L P  +T  TL V
Sbjct: 172 AFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLV 231

Query: 372 ECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRP 427
           E  +      A+ +  ++ R     +   FS+ +A        ++A+  F  M++  L P
Sbjct: 232 ESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLVP 291

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL 487
           D   Y +L      ++     GNM   +        I  +M         I+   +L  L
Sbjct: 292 DNVIYTVL------MHGYCRNGNMLEAL-------KIRDEMLEQGCVLDVIAYNTILNGL 338

Query: 488 GAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNA 544
             E M+ +  + F +       P   T+ T++H   +     +A+ +F  M    I P+ 
Sbjct: 339 CKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDI 398

Query: 545 ATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDL 604
             YN +ID    +   + AS L   M+    +P  +TY  LI      G   EA  L D+
Sbjct: 399 VAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDV 458

Query: 605 VSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYV 660
           +  +GI   ++  NT++K  C  G     +  + +M    V PD  + + + +G+V
Sbjct: 459 MIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTLINGFV 514



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 84/380 (22%), Positives = 160/380 (42%), Gaps = 22/380 (5%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTI-ATLS 370
            +  + +M+  G+     TY+  I A   +  L    E++  M    LKP   T  A ++
Sbjct: 137 VKSFLSEMEGNGIYADMVTYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIIN 196

Query: 371 VECSKALELDLAEALLDQISRCTNPKP--FSAFLAACDTMDKPERAIKIFAKM-RQKLRP 427
             C K         L++ ++   +P    ++  L      D    A +IF +M RQ + P
Sbjct: 197 GLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVP 256

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL 487
           D+ ++  L ++F   N   ++  ++ +    K+   +  ++    + H +    N+L+AL
Sbjct: 257 DLVSFSSLIAVFSR-NRHLDQALVYFR--DMKKFGLVPDNVIYTVLMHGYCRNGNMLEAL 313

Query: 488 GAEGMIR-ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAAT 546
                IR E+++  C     L    YNT+L+ L + +    A ++F +M   G  P+  T
Sbjct: 314 ----KIRDEMLEQGC----VLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDFYT 365

Query: 547 YNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLD-LV 605
           +  +I           A +L   M +    P  + Y  LI      G+ ++A  L D ++
Sbjct: 366 FTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMI 425

Query: 606 SLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFH 665
           S +  P+ +  Y  ++   C  G +     + + M +  ++P   TC+ V  GY   G  
Sbjct: 426 SRKIFPNHIT-YGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGDS 484

Query: 666 NSAMEALQVLSMRMLCEEVS 685
           + A E L     RM+ + V+
Sbjct: 485 SKADEFLG----RMIAKGVA 500



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 107/521 (20%), Positives = 194/521 (37%), Gaps = 72/521 (13%)

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
           ME   I  +   Y  ++ A C+ G LEEA  ++  + ++ G+ P L  YN+ +    K  
Sbjct: 144 MEGNGIYADMVTYNTLIGAYCREGLLEEAFEIMNSMADK-GLKPSLFTYNAIINGLCKKG 202

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSL-SIFSLR 231
               A   L  M +  +  +  TY  LL  +  + N S   EI+ + ++   +  + S  
Sbjct: 203 RYARAKGILIEMLNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFS 262

Query: 232 KFVWSFTRLRDLKSAYETLQHMVALAMMGKLYI------------NRTSEGRLRSSRLDI 279
             +  F+R R L  A    + M    ++    I            N     ++R   L+ 
Sbjct: 263 SLIAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQ 322

Query: 280 PIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIV 339
              L+ +        +++ +++   + +    A++L  +M   G  P  +T+   I    
Sbjct: 323 GCVLDVI--------AYNTILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHC 374

Query: 340 SDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLD-QISRCTNPKPF 398
            D  +   + +   M Q N+KP      TL     K  E++ A  L D  ISR       
Sbjct: 375 QDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISR------- 427

Query: 399 SAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSA 458
                            KIF        P+  TY +L + + +V            V  A
Sbjct: 428 -----------------KIF--------PNHITYGILINAYCSV----------GHVSEA 452

Query: 459 KRINAIEMDMARNNIQHSHISMKNLLKAL---GAEGMIRELIQYFCDSKTPLGTPTYNTV 515
            R+  +   M    I+ + ++   ++K     G      E +             +YNT+
Sbjct: 453 FRLWDV---MIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTL 509

Query: 516 LHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGF 575
           ++  V      +A     +M+  G+ P+  TYN++++        + A  ++  M+  G 
Sbjct: 510 INGFVREDNMDKAFLWINKMEKEGLLPDIITYNVVMNGFCRQGRMQEAELVLRKMIEKGI 569

Query: 576 YPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGI-PHDVL 615
            P   TYTALI   +   + +EA    D +   G  P DV 
Sbjct: 570 NPDRSTYTALINGHVTQDNLNEAFRFHDEMLQRGFAPDDVF 610



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 79/377 (20%), Positives = 143/377 (37%), Gaps = 30/377 (7%)

Query: 311 LAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL- 369
           LA ++  ++   G++ + +T +  + A+  D    +    L  M+ N +     T  TL 
Sbjct: 101 LAWEVHREVVRSGIELNVYTLNIMVNALCKDGKFDDVKSFLSEMEGNGIYADMVTYNTLI 160

Query: 370 SVECSKALELDLAEALLDQISRCTNPKPFS--AFLAACDTMDKPERAIKIFAKMRQ-KLR 426
              C + L  +  E +     +   P  F+  A +       +  RA  I  +M    L 
Sbjct: 161 GAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLS 220

Query: 427 PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM-----DMARNNIQHSHISMK 481
           PD  TY  L                   V+S +R N  E      +M R  +    +S  
Sbjct: 221 PDTTTYNTLL------------------VESCRRDNFSEAKEIFGEMLRQGVVPDLVSFS 262

Query: 482 NLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTC 538
           +L+        + + + YF D K     P    Y  ++H          A++I  +M   
Sbjct: 263 SLIAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQ 322

Query: 539 GIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEA 598
           G   +   YN +++     +    A  L   MV  G  P   T+T LI      G+  +A
Sbjct: 323 GCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKA 382

Query: 599 LNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
           L+L   ++   I  D++ YNT++   C+ G ++    + + M   K+ P+  T   + + 
Sbjct: 383 LSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILINA 442

Query: 659 YVNCGFHNSAMEALQVL 675
           Y + G  + A     V+
Sbjct: 443 YCSVGHVSEAFRLWDVM 459



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 81/380 (21%), Positives = 147/380 (38%), Gaps = 69/380 (18%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNG--MEVLK 352
           SFS +I    R ++   A      M+  GL P     D  I  ++     RNG  +E LK
Sbjct: 260 SFSSLIAVFSRNRHLDQALVYFRDMKKFGLVP-----DNVIYTVLMHGYCRNGNMLEALK 314

Query: 353 I----MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPK--PFSAFLAAC 405
           I    ++Q  +    +    L+  C + +  D A+ L D+ + R   P    F+  +   
Sbjct: 315 IRDEMLEQGCVLDVIAYNTILNGLCKEKMLTD-ADKLFDEMVERGALPDFYTFTTLIHGH 373

Query: 406 DTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAI 464
                  +A+ +F  M Q+ ++PDI  Y  L              + F +V   ++ + +
Sbjct: 374 CQDGNMTKALSLFGTMTQRNIKPDIVAYNTLI-------------DGFCKVGEMEKASEL 420

Query: 465 EMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP----TYNTVLHSLV 520
              M    I  +HI+   L+ A  + G + E  + + D     G      T NTV+    
Sbjct: 421 WDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLW-DVMIEKGIKPTLVTCNTVIKGYC 479

Query: 521 EAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTM 580
            + +S +A E   +M   G+ P+  +YN +I+          A   ++ M ++G  P   
Sbjct: 480 RSGDSSKADEFLGRMIAKGVAPDHISYNTLINGFVREDNMDKAFLWINKMEKEGLLP--- 536

Query: 581 TYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQM 640
                                           D++ YN ++   C +GR+   E ++ +M
Sbjct: 537 --------------------------------DIITYNVVMNGFCRQGRMQEAELVLRKM 564

Query: 641 HQNKVQPDPSTCHFVFSGYV 660
            +  + PD ST   + +G+V
Sbjct: 565 IEKGINPDRSTYTALINGHV 584



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 67/139 (48%)

Query: 513 NTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVR 572
           N++L  LV+      A E+ +++   GI  N  T NIM++       F    + +S M  
Sbjct: 87  NSLLGGLVKIDWVELAWEVHREVVRSGIELNVYTLNIMVNALCKDGKFDDVKSFLSEMEG 146

Query: 573 DGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDV 632
           +G Y   +TY  LI      G  +EA  +++ ++ +G+   +  YN I+   C+KGR   
Sbjct: 147 NGIYADMVTYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYAR 206

Query: 633 IEFIIEQMHQNKVQPDPST 651
            + I+ +M    + PD +T
Sbjct: 207 AKGILIEMLNIGLSPDTTT 225


>gi|414588908|tpg|DAA39479.1| TPA: chloroplast RNA splicing4 [Zea mays]
          Length = 1438

 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 78/361 (21%), Positives = 146/361 (40%), Gaps = 28/361 (7%)

Query: 299 VIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNN 358
           V+   GR +   +AE++ L+    G   +   ++  +          +  ++L  M    
Sbjct: 194 VLGVLGRARQDSIAEEVFLRFAGEG--ATVQVFNAMMGVYARSGRFDDARQLLDTMHDRG 251

Query: 359 LKPQDSTIATLSVECSKA--LELDLAEALLDQISRCTNPKP----FSAFLAACDTMDKPE 412
           + P   +  TL    SK+  L   +A  LL ++ R +  +P    ++  ++AC      E
Sbjct: 252 IDPDLVSFNTLINARSKSGCLAAGVALDLLFEV-RQSGLRPDVITYNTLISACSQSSNLE 310

Query: 413 RAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471
            A+ +F  M   + RPD+ TY  + S+ G      E   +F +             +   
Sbjct: 311 DAVTVFEDMIASECRPDLWTYNAMVSVHGRCGKAEEAERLFRE-------------LVEK 357

Query: 472 NIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP----TYNTVLHSLVEAQESHR 527
                 I+  +LL A   EG + + +++ C+     G      TYNT++H   +      
Sbjct: 358 GFMPDAITYNSLLYAFAKEGNV-DKVEHTCEQLVKAGFKKNEITYNTMIHMYGKMGRLDL 416

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A+ ++ +M+  G  P+A TY +MID    +     A  ++  M   G  P  + ++ALI 
Sbjct: 417 AVGLYDEMRAMGCTPDAVTYTVMIDSLGKMNRIAEAGKVLEDMTDAGLKPTLIAFSALIC 476

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
                G   +A N  D +   G+  D L Y  +L      G  + +  +  +M  +  +P
Sbjct: 477 AYAKGGRRADAENTFDCMIASGVKPDRLAYLVMLDVFARSGDTEKMLCLYRKMMNDNYRP 536

Query: 648 D 648
           D
Sbjct: 537 D 537



 Score = 60.1 bits (144), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 76/167 (45%), Gaps = 7/167 (4%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASA--LVS 568
           TYNT++ +  ++     A+ +F+ M      P+  TYN M+      RC K+  A  L  
Sbjct: 295 TYNTLISACSQSSNLEDAVTVFEDMIASECRPDLWTYNAMVSVHG--RCGKAEEAERLFR 352

Query: 569 MMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
            +V  GF P  +TY +L+      G+ D+  +  + +   G   + + YNT++    + G
Sbjct: 353 ELVEKGFMPDAITYNSLLYAFAKEGNVDKVEHTCEQLVKAGFKKNEITYNTMIHMYGKMG 412

Query: 629 RIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
           R+D+   + ++M      PD  T   +     + G  N   EA +VL
Sbjct: 413 RLDLAVGLYDEMRAMGCTPDAVTYTVMID---SLGKMNRIAEAGKVL 456



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/172 (22%), Positives = 72/172 (41%), Gaps = 3/172 (1%)

Query: 479 SMKNLLKALGAEGMIREL---IQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQM 535
           S+  +++AL  +G + EL   ++   D    +   T   +L +  +A +    M+I+  M
Sbjct: 817 SVNGMMRALIVDGRLDELYVVVEELQDMNFKISKSTVLLLLDAFAKAGDVFEVMKIYNGM 876

Query: 536 KTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDF 595
           K  G  PN   Y  MI        F+    +++ M   GF P      AL+ +    G+F
Sbjct: 877 KAAGYLPNMHLYRSMISLLCHHNRFRDVELMIAEMEGAGFKPDLAILNALLNMYTAAGNF 936

Query: 596 DEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
           D    +   +   G+  D   YNT++   C   R +    ++ +M +  + P
Sbjct: 937 DRTTQVYRSILEAGLEPDEDTYNTLIVMYCRSFRPEEGFTLLNEMGKRGLTP 988



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 53/261 (20%), Positives = 112/261 (42%), Gaps = 20/261 (7%)

Query: 313  EQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVE 372
            E ++ +M+  G +P     +  +    +        +V + + +  L+P + T  TL V 
Sbjct: 905  ELMIAEMEGAGFKPDLAILNALLNMYTAAGNFDRTTQVYRSILEAGLEPDEDTYNTLIVM 964

Query: 373  CSKALELDLAEALLDQIS-RCTNPK--PFSAFLAACDTMDKPERAIKIFAKMRQKLRPDI 429
              ++   +    LL+++  R   PK   + + LAA    +  E+A +IF +MR K     
Sbjct: 965  YCRSFRPEEGFTLLNEMGKRGLTPKLQSYKSLLAASAKAELREQADQIFEEMRSK----- 1019

Query: 430  RTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGA 489
             +Y+L  S++  +   Y      S+ ++   +      M  + I+ +  +M  L+ + G 
Sbjct: 1020 -SYQLNRSIYHMMMKIYRNAGNHSKAENLLAV------MKEDGIEPTIATMHILMTSYGT 1072

Query: 490  EGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAAT 546
             G  RE   ++     S   + T  Y+TV  + ++  + +       +MK  G+ P+   
Sbjct: 1073 AGQPREAENVLNNLKSSSLEVSTLPYSTVFDAYLKNGDYNHGTTKLLEMKRDGVEPDHQV 1132

Query: 547  YNIMIDCCSIIRCFKSASALV 567
            +   I   S+  C ++A A++
Sbjct: 1133 WTCFIRAASL--CEQTADAIL 1151



 Score = 45.4 bits (106), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 78/185 (42%), Gaps = 7/185 (3%)

Query: 483 LLKALGAEGMIREL--IQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGI 540
           +++A+G     R L   ++   S  P  +     VL  L  A++   A E+F  ++  G 
Sbjct: 161 VVRAVGESSWRRALDAFEWLARSSAP-ASRAVAVVLGVLGRARQDSIAEEVF--LRFAGE 217

Query: 541 PPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDE--A 598
                 +N M+   +    F  A  L+  M   G  P  +++  LI      G      A
Sbjct: 218 GATVQVFNAMMGVYARSGRFDDARQLLDTMHDRGIDPDLVSFNTLINARSKSGCLAAGVA 277

Query: 599 LNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
           L+LL  V   G+  DV+ YNT++    +   ++    + E M  ++ +PD  T + + S 
Sbjct: 278 LDLLFEVRQSGLRPDVITYNTLISACSQSSNLEDAVTVFEDMIASECRPDLWTYNAMVSV 337

Query: 659 YVNCG 663
           +  CG
Sbjct: 338 HGRCG 342



 Score = 44.7 bits (104), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 68/381 (17%), Positives = 140/381 (36%), Gaps = 43/381 (11%)

Query: 293  RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
            R  ++ +IHA   +     A  +   M   G  P+  + +G +RA++ D  L     V++
Sbjct: 780  RRIWNALIHAYAESGLYEKARAVFDNMIKTGPLPTVDSVNGMMRALIVDGRLDELYVVVE 839

Query: 353  IMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPE 412
             +Q  N K   ST+  L                              AF  A D  +   
Sbjct: 840  ELQDMNFKISKSTVLLL----------------------------LDAFAKAGDVFE--- 868

Query: 413  RAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471
              +KI+  M+     P++  Y  + SL  + N   +   M ++++ A      + D+A  
Sbjct: 869  -VMKIYNGMKAAGYLPNMHLYRSMISLLCHHNRFRDVELMIAEMEGA----GFKPDLAIL 923

Query: 472  NIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEI 531
            N      ++ N+  A G      ++ +   ++       TYNT++     +        +
Sbjct: 924  N------ALLNMYTAAGNFDRTTQVYRSILEAGLEPDEDTYNTLIVMYCRSFRPEEGFTL 977

Query: 532  FKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLD 591
              +M   G+ P   +Y  ++   +     + A  +   M    +      Y  ++KI  +
Sbjct: 978  LNEMGKRGLTPKLQSYKSLLAASAKAELREQADQIFEEMRSKSYQLNRSIYHMMMKIYRN 1037

Query: 592  YGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
             G+  +A NLL ++  +GI   +   + ++      G+    E ++  +  + ++     
Sbjct: 1038 AGNHSKAENLLAVMKEDGIEPTIATMHILMTSYGTAGQPREAENVLNNLKSSSLEVSTLP 1097

Query: 652  CHFVFSGYVNCGFHNSAMEAL 672
               VF  Y+  G +N     L
Sbjct: 1098 YSTVFDAYLKNGDYNHGTTKL 1118



 Score = 42.4 bits (98), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 31/156 (19%), Positives = 67/156 (42%), Gaps = 4/156 (2%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASAL--VS 568
            +N ++     +     A ++   M   GI P+  ++N +I+  S   C  +  AL  + 
Sbjct: 223 VFNAMMGVYARSGRFDDARQLLDTMHDRGIDPDLVSFNTLINARSKSGCLAAGVALDLLF 282

Query: 569 MMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL-DLVSLEGIPHDVLLYNTILKKACEK 627
            + + G  P  +TY  LI       + ++A+ +  D+++ E  P D+  YN ++      
Sbjct: 283 EVRQSGLRPDVITYNTLISACSQSSNLEDAVTVFEDMIASECRP-DLWTYNAMVSVHGRC 341

Query: 628 GRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
           G+ +  E +  ++ +    PD  T + +   +   G
Sbjct: 342 GKAEEAERLFRELVEKGFMPDAITYNSLLYAFAKEG 377



 Score = 42.4 bits (98), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 38/177 (21%), Positives = 76/177 (42%), Gaps = 6/177 (3%)

Query: 513  NTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASA--LVSMM 570
            N +L+    A    R  ++++ +   G+ P+  TYN +I      R F+      L++ M
Sbjct: 924  NALLNMYTAAGNFDRTTQVYRSILEAGLEPDEDTYNTLI--VMYCRSFRPEEGFTLLNEM 981

Query: 571  VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
             + G  P+  +Y +L+         ++A  + + +  +    +  +Y+ ++K     G  
Sbjct: 982  GKRGLTPKLQSYKSLLAASAKAELREQADQIFEEMRSKSYQLNRSIYHMMMKIYRNAGNH 1041

Query: 631  DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTL 687
               E ++  M ++ ++P  +T H + + Y   G    A   L  L    L  EVSTL
Sbjct: 1042 SKAENLLAVMKEDGIEPTIATMHILMTSYGTAGQPREAENVLNNLKSSSL--EVSTL 1096


>gi|224130706|ref|XP_002328356.1| predicted protein [Populus trichocarpa]
 gi|222838071|gb|EEE76436.1| predicted protein [Populus trichocarpa]
          Length = 613

 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 100/212 (47%), Gaps = 5/212 (2%)

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQE 524
           M +  I    I+   L+  L  EG I+E ++ F +       P   +Y TV++ L +   
Sbjct: 154 MFKLGIHPDAITFNALINGLCNEGKIKEAVELFNEMVKRGHEPNVISYTTVINGLCKTGN 213

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
           +  A+++FK+M+  G  PN  TY+ +ID     R    A   +S MV  G  P   TY +
Sbjct: 214 TSMAVDVFKKMEQNGCKPNVVTYSTIIDSLCKDRLVNDAMEFLSEMVERGIPPNVFTYNS 273

Query: 585 LIKILLDYGDFDEALNLL-DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
           ++    + G  +EA  L  ++V  + +P+ V  +  ++   C++G +     + E M + 
Sbjct: 274 IVHGFCNLGQLNEATRLFKEMVGRDVMPNTV-TFTILVDGLCKEGMVSEARLVFETMTEK 332

Query: 644 KVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
            V+PD ST + +  GY      N A +  +++
Sbjct: 333 GVEPDISTYNALMDGYCLQRLMNEAKKVFEIM 364



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 75/363 (20%), Positives = 162/363 (44%), Gaps = 22/363 (6%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           +S + +I+   R  +   +  ++ +M  LG+ P + T++  I  + ++  ++  +E+   
Sbjct: 129 YSLNILINCLCRLNHVDFSVSVLGKMFKLGIHPDAITFNALINGLCNEGKIKEAVELFNE 188

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPE- 412
           M +   +P   +  T+     K     +A  +  ++ +         +    D++ K   
Sbjct: 189 MVKRGHEPNVISYTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIIDSLCKDRL 248

Query: 413 --RAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
              A++  ++M ++ + P++ TY  +   F N+           Q++ A R+     +M 
Sbjct: 249 VNDAMEFLSEMVERGIPPNVFTYNSIVHGFCNL----------GQLNEATRLFK---EMV 295

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGT----PTYNTVLHSLVEAQES 525
             ++  + ++   L+  L  EGM+ E    F ++ T  G      TYN ++      +  
Sbjct: 296 GRDVMPNTVTFTILVDGLCKEGMVSEARLVF-ETMTEKGVEPDISTYNALMDGYCLQRLM 354

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
           + A ++F+ M   G  P A +YNI+I+     R    A +L++ M      P T+TY+ L
Sbjct: 355 NEAKKVFEIMIRKGCAPGAHSYNILINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYSTL 414

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           ++ L   G   EALNL   +   G   +++ Y  +L   C+ G +D    +++ M + K+
Sbjct: 415 MQGLCQLGRPKEALNLFKEMCSYGPHPNLVTYVILLDGFCKHGHLDEALKLLKSMKEKKL 474

Query: 646 QPD 648
           +P+
Sbjct: 475 EPN 477



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 85/361 (23%), Positives = 144/361 (39%), Gaps = 37/361 (10%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           S++ VI+   +T N+ +A  +  +M+  G +P+  TY   I ++  DR + + ME L  M
Sbjct: 200 SYTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIIDSLCKDRLVNDAMEFLSEM 259

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPKPFSAFLAACDTMDKP-- 411
            +  + P   T  ++        +L+ A  L  + + R   P   + F    D + K   
Sbjct: 260 VERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVT-FTILVDGLCKEGM 318

Query: 412 -ERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFS---------------- 453
              A  +F  M +K + PDI TY  L   +       E   +F                 
Sbjct: 319 VSEARLVFETMTEKGVEPDISTYNALMDGYCLQRLMNEAKKVFEIMIRKGCAPGAHSYNI 378

Query: 454 ---------QVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYF---C 501
                    ++D AK + A   +M    +    ++   L++ L   G  +E +  F   C
Sbjct: 379 LINGYCKSRRMDEAKSLLA---EMYHKALNPDTVTYSTLMQGLCQLGRPKEALNLFKEMC 435

Query: 502 DSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFK 561
                    TY  +L    +      A+++ K MK   + PN   Y I+I+   I    +
Sbjct: 436 SYGPHPNLVTYVILLDGFCKHGHLDEALKLLKSMKEKKLEPNIVHYTILIEGMFIAGKLE 495

Query: 562 SASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTIL 621
            A  L S +  DG  P   TYT +IK LL  G  DEA +L   +  +G   +   YN ++
Sbjct: 496 VAKELFSKLFGDGTRPDIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCSYNVMI 555

Query: 622 K 622
           +
Sbjct: 556 Q 556



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 79/370 (21%), Positives = 159/370 (42%), Gaps = 22/370 (5%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL-S 370
           A +L  +M   G +P+  +Y   I  +         ++V K M+QN  KP   T +T+  
Sbjct: 182 AVELFNEMVKRGHEPNVISYTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIID 241

Query: 371 VECSKALELDLAEALLDQISRCTNPKPFS--AFLAACDTMDKPERAIKIFAKMRQK-LRP 427
             C   L  D  E L + + R   P  F+  + +     + +   A ++F +M  + + P
Sbjct: 242 SLCKDRLVNDAMEFLSEMVERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMP 301

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQ---VDSAKRINAIEMDMARNNIQHSHISMKNLL 484
           +  T+ +L      V+   +EG M S+   V        +E D++  N       ++ L+
Sbjct: 302 NTVTFTIL------VDGLCKEG-MVSEARLVFETMTEKGVEPDISTYNALMDGYCLQRLM 354

Query: 485 KALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNA 544
               A+ +   +I+  C      G  +YN +++   +++    A  +  +M    + P+ 
Sbjct: 355 NE--AKKVFEIMIRKGCAP----GAHSYNILINGYCKSRRMDEAKSLLAEMYHKALNPDT 408

Query: 545 ATYN-IMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLD 603
            TY+ +M   C + R  K A  L   M   G +P  +TY  L+     +G  DEAL LL 
Sbjct: 409 VTYSTLMQGLCQLGRP-KEALNLFKEMCSYGPHPNLVTYVILLDGFCKHGHLDEALKLLK 467

Query: 604 LVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
            +  + +  +++ Y  +++     G+++V + +  ++  +  +PD  T   +  G +  G
Sbjct: 468 SMKEKKLEPNIVHYTILIEGMFIAGKLEVAKELFSKLFGDGTRPDIRTYTVMIKGLLKEG 527

Query: 664 FHNSAMEALQ 673
             + A +  +
Sbjct: 528 LSDEAYDLFR 537



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 107/248 (43%), Gaps = 13/248 (5%)

Query: 414 AIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQ-VDSAKRINAIEMDMARN 471
           ++ +  KM +  + PD  T+  L +   N     E   +F++ V      N I       
Sbjct: 147 SVSVLGKMFKLGIHPDAITFNALINGLCNEGKIKEAVELFNEMVKRGHEPNVI------- 199

Query: 472 NIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEI 531
               S+ ++ N L   G   M  ++ +    +       TY+T++ SL + +  + AME 
Sbjct: 200 ----SYTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIIDSLCKDRLVNDAMEF 255

Query: 532 FKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLD 591
             +M   GIPPN  TYN ++     +     A+ L   MV     P T+T+T L+  L  
Sbjct: 256 LSEMVERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTFTILVDGLCK 315

Query: 592 YGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
            G   EA  + + ++ +G+  D+  YN ++   C +  ++  + + E M +    P   +
Sbjct: 316 EGMVSEARLVFETMTEKGVEPDISTYNALMDGYCLQRLMNEAKKVFEIMIRKGCAPGAHS 375

Query: 652 CHFVFSGY 659
            + + +GY
Sbjct: 376 YNILINGY 383



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 77/175 (44%)

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           +   L S  + ++    + +  QM    +  N  + NI+I+C   +     + +++  M 
Sbjct: 96  FGKFLGSFAKKKQYSTVVSLCNQMDLFRVTHNVYSLNILINCLCRLNHVDFSVSVLGKMF 155

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
           + G +P  +T+ ALI  L + G   EA+ L + +   G   +V+ Y T++   C+ G   
Sbjct: 156 KLGIHPDAITFNALINGLCNEGKIKEAVELFNEMVKRGHEPNVISYTTVINGLCKTGNTS 215

Query: 632 VIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           +   + ++M QN  +P+  T   +          N AME L  +  R +   V T
Sbjct: 216 MAVDVFKKMEQNGCKPNVVTYSTIIDSLCKDRLVNDAMEFLSEMVERGIPPNVFT 270



 Score = 60.5 bits (145), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/176 (22%), Positives = 80/176 (45%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           T+N +++ L    +   A+E+F +M   G  PN  +Y  +I+          A  +   M
Sbjct: 165 TFNALINGLCNEGKIKEAVELFNEMVKRGHEPNVISYTTVINGLCKTGNTSMAVDVFKKM 224

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
            ++G  P  +TY+ +I  L      ++A+  L  +   GIP +V  YN+I+   C  G++
Sbjct: 225 EQNGCKPNVVTYSTIIDSLCKDRLVNDAMEFLSEMVERGIPPNVFTYNSIVHGFCNLGQL 284

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           +    + ++M    V P+  T   +  G    G  + A    + ++ + +  ++ST
Sbjct: 285 NEATRLFKEMVGRDVMPNTVTFTILVDGLCKEGMVSEARLVFETMTEKGVEPDIST 340



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 87/482 (18%), Positives = 168/482 (34%), Gaps = 84/482 (17%)

Query: 128 MMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSR 187
           ++  LC  G ++EA  L   + +R G  P +  Y + +    K  +   A      M+  
Sbjct: 169 LINGLCNEGKIKEAVELFNEMVKR-GHEPNVISYTTVINGLCKTGNTSMAVDVFKKMEQN 227

Query: 188 MVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYSLSIFSLRKFVWSFTRLRDLKSA 246
               N VTY+ ++      + ++   E   + + +    ++F+    V  F  L  L  A
Sbjct: 228 GCKPNVVTYSTIIDSLCKDRLVNDAMEFLSEMVERGIPPNVFTYNSIVHGFCNLGQLNEA 287

Query: 247 YETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRT 306
               + MV   +M                                   +F+ ++    + 
Sbjct: 288 TRLFKEMVGRDVMPN-------------------------------TVTFTILVDGLCKE 316

Query: 307 QNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTI 366
                A  +   M   G++P   TY+  +      R +    +V +IM +    P   + 
Sbjct: 317 GMVSEARLVFETMTEKGVEPDISTYNALMDGYCLQRLMNEAKKVFEIMIRKGCAPGAHSY 376

Query: 367 ATLSVECSKALELDLAEALLDQI-SRCTNPKP--FSAFLAACDTMDKPERAIKIFAKM-R 422
             L     K+  +D A++LL ++  +  NP    +S  +     + +P+ A+ +F +M  
Sbjct: 377 NILINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQLGRPKEALNLFKEMCS 436

Query: 423 QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMK- 481
               P++ TY +L   F                                  +H H+    
Sbjct: 437 YGPHPNLVTYVILLDGF---------------------------------CKHGHLDEAL 463

Query: 482 NLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIP 541
            LLK++  + +   ++ Y               ++  +  A +   A E+F ++   G  
Sbjct: 464 KLLKSMKEKKLEPNIVHY-------------TILIEGMFIAGKLEVAKELFSKLFGDGTR 510

Query: 542 PNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNL 601
           P+  TY +MI           A  L   M  DGF P + +Y  +I+  L   D   A+ L
Sbjct: 511 PDIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCSYNVMIQGFLQNQDSSTAIRL 570

Query: 602 LD 603
           +D
Sbjct: 571 ID 572



 Score = 49.3 bits (116), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 89/403 (22%), Positives = 158/403 (39%), Gaps = 51/403 (12%)

Query: 44  MGLNEESISKATQMQIVDALC-RGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPD 102
           +G++ ++I   T   +++ LC  G+   A  L   +    H      +  ++N   ++ +
Sbjct: 157 LGIHPDAI---TFNALINGLCNEGKIKEAVELFNEMVKRGHEPNVISYTTVINGLCKTGN 213

Query: 103 PLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYN 162
               ++ ++ ME+     N   Y  ++ +LCK   + +A   +  + ER GI P +  YN
Sbjct: 214 TSMAVDVFKKMEQNGCKPNVVTYSTIIDSLCKDRLVNDAMEFLSEMVER-GIPPNVFTYN 272

Query: 163 SFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-K 221
           S +     L  +  A      M  R V  N VT+T L+     +  +S    ++E    K
Sbjct: 273 SIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTFTILVDGLCKEGMVSEARLVFETMTEK 332

Query: 222 HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMM-GKLYINRTSEGRLRSSRLDIP 280
                I +    +  +   R +  A +  + M+      G    N    G  +S R+D  
Sbjct: 333 GVEPDISTYNALMDGYCLQRLMNEAKKVFEIMIRKGCAPGAHSYNILINGYCKSRRMDEA 392

Query: 281 IPLNALPVMKVLR---WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTY----DG 333
             L A    K L     ++S ++    +      A  L  +M S G  P+  TY    DG
Sbjct: 393 KSLLAEMYHKALNPDTVTYSTLMQGLCQLGRPKEALNLFKEMCSYGPHPNLVTYVILLDG 452

Query: 334 FIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT 393
           F +    D  L+    +LK M++  L+P    I   ++         L E +        
Sbjct: 453 FCKHGHLDEALK----LLKSMKEKKLEPN---IVHYTI---------LIEGM-------- 488

Query: 394 NPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELL 435
                  F+A      K E A ++F+K+     RPDIRTY ++
Sbjct: 489 -------FIAG-----KLEVAKELFSKLFGDGTRPDIRTYTVM 519


>gi|414875530|tpg|DAA52661.1| TPA: hypothetical protein ZEAMMB73_467633 [Zea mays]
          Length = 987

 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 111/554 (20%), Positives = 211/554 (38%), Gaps = 69/554 (12%)

Query: 112 MMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKL 171
           MM +    LN   Y L+++ LCK G + +A  L+  +  R G+ P +  YN+ +    K 
Sbjct: 274 MMVQDGCSLNLHMYTLLIKGLCKEGRIHDARGLLDEMPLR-GVVPSVWTYNAMIDGYCKS 332

Query: 172 HSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYSLSIFSL 230
             M  A     LM+      ++ TY  L+   +    L    E+    I + ++ ++ + 
Sbjct: 333 GRMKDALGIKALMEQNGCNPDDWTYNSLI-YGLCGGKLDEAEELLNGAIARGFTPTVITF 391

Query: 231 RKFVWSFTRLRDLKSAYETLQHMVA------LAMMGKLYINRTSEGRLRSSRLDI-PIPL 283
              +  + +   +  A     +M++      L   G L      + RL+ ++  +  +  
Sbjct: 392 TNLINGYCKAERIDDALRVKSNMISSNCKLDLQAYGVLINVLIKKCRLKEAKETLNEMFA 451

Query: 284 NALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRG 343
           N L    V+   ++ +I    +    G A ++   M+  G  P++ TY   I  ++ D+ 
Sbjct: 452 NGLAPNVVI---YTSIIDGYCKVGMVGAALEVFKLMEHEGCHPNAWTYGSLIYGLIQDKK 508

Query: 344 LRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLA 403
           L   M ++  MQ++ + P      TL     K  E D                       
Sbjct: 509 LHKAMALITKMQEDGITPGVIAYTTLIQGQCKKHEFD----------------------- 545

Query: 404 ACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRIN 462
                     A ++F  M +  L PD + Y +L       +   EE   F          
Sbjct: 546 ---------NAFRLFEMMEKNGLTPDEQAYNVLTDALCK-SGRAEEAYSF---------- 585

Query: 463 AIEMDMARNNIQHSHISMKNLLKALGAEG---MIRELIQYFCDSKTPLGTPTYNTVLHSL 519
                + R  +  + ++  +L+      G       LI+   +        TY+ +L +L
Sbjct: 586 -----LVRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADLYTYSVLLQAL 640

Query: 520 VEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFK--SASALVSMMVRDGFYP 577
            + ++ + A+ I  QM   G+  N   Y I+I    +I+  K   A +L + M+  G  P
Sbjct: 641 CKQKKLNEALSILDQMTVSGVKCNIVAYTIIIS--EMIKEGKHDHAKSLFNEMISSGHKP 698

Query: 578 QTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFII 637
              TYT  I      G  +EA +L+  +  +G+  DV+ Y+  +      G +D     +
Sbjct: 699 SATTYTVFISSYCKIGQIEEAEHLIGEMERDGVTPDVVTYHIFINGCGHMGYMDRAFSTL 758

Query: 638 EQMHQNKVQPDPST 651
           ++M     +P+  T
Sbjct: 759 KRMVDASCEPNCWT 772



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 134/670 (20%), Positives = 268/670 (40%), Gaps = 56/670 (8%)

Query: 10  FQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERS 69
           +  + D +CKS            +++ +  +   M  N  +    T   ++  LC G+  
Sbjct: 322 YNAMIDGYCKS-----------GRMKDALGIKALMEQNGCNPDDWTYNSLIYGLCGGKLD 370

Query: 70  RASHLLLNLGHAHHSLGADDFFHILN-YCA--RSPDPLFVMETWRMMEEKEIGLNNKCYL 126
            A  LL        +     F +++N YC   R  D L V      M      L+ + Y 
Sbjct: 371 EAEELLNGAIARGFTPTVITFTNLINGYCKAERIDDALRVKSN---MISSNCKLDLQAYG 427

Query: 127 LMMQALCKGGYLEEASNLIYFLGERY--GIYPILPVYNSFLGACAKLHSMVHANL-CLDL 183
           +++  L K   L+EA      L E +  G+ P + +Y S +    K+  MV A L    L
Sbjct: 428 VLINVLIKKCRLKEAKET---LNEMFANGLAPNVVIYTSIIDGYCKV-GMVGAALEVFKL 483

Query: 184 MDSRMVGKNEVTYTELLKLAVWQKNL----SAVHEIWEDYIKHYSLSIFSLRKFVWSFTR 239
           M+      N  TY  L+   +  K L    + + ++ ED I   +  + +    +    +
Sbjct: 484 MEHEGCHPNAWTYGSLIYGLIQDKKLHKAMALITKMQEDGI---TPGVIAYTTLIQGQCK 540

Query: 240 LRDLKSAYETLQHMVALAMM-GKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSD 298
             +  +A+   + M    +   +   N  ++   +S R +          + + + +++ 
Sbjct: 541 KHEFDNAFRLFEMMEKNGLTPDEQAYNVLTDALCKSGRAEEAYSFLVRKGVVLTKVTYTS 600

Query: 299 VIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNN 358
           ++    +  N+  A  L+ +M + G +   +TY   ++A+   + L   + +L  M  + 
Sbjct: 601 LVDGFSKAGNTDFAAVLIEKMVNEGCKADLYTYSVLLQALCKQKKLNEALSILDQMTVSG 660

Query: 359 LKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPKP--FSAFLAACDTMDKPERAI 415
           +K        +  E  K  + D A++L ++ IS    P    ++ F+++   + + E A 
Sbjct: 661 VKCNIVAYTIIISEMIKEGKHDHAKSLFNEMISSGHKPSATTYTVFISSYCKIGQIEEAE 720

Query: 416 KIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI--NAIEMDMARNN 472
            +  +M R  + PD+ TY +  +  G++      G M     + KR+   + E +     
Sbjct: 721 HLIGEMERDGVTPDVVTYHIFINGCGHM------GYMDRAFSTLKRMVDASCEPNCWTYW 774

Query: 473 IQHSHISMKNLLKA--LGAEGM--------IRELIQYFCDSKTPLGTPTYNTVLHSLVEA 522
           +   H    +L+ A  +   GM        + +L++            TY++++    +A
Sbjct: 775 LLLKHFLKMSLINAHYIDTSGMWNWIELNTVWQLLERMMKHGLNPTVVTYSSIIAGFCKA 834

Query: 523 QESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTY 582
                A  +   M    I PN   Y ++I CC  I+ F    + V+ M+  GF PQ  +Y
Sbjct: 835 TRLEEACVLLDHMLGKAISPNEEIYTMLIKCCCDIKLFGKDVSFVTDMIEFGFQPQLESY 894

Query: 583 TALIKILLDYGDFDEALNLL-DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMH 641
             LI  L D GD+D A +L  DL+ ++   H+ + +  +     + G +D    ++  M 
Sbjct: 895 HYLIVGLCDEGDYDRAKSLFCDLLGMD-YNHNEVAWKILNDGLLKAGHVDFCSQLLAAMD 953

Query: 642 QNKVQPDPST 651
               + D  +
Sbjct: 954 NRHCRIDSES 963



 Score = 76.3 bits (186), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 88/398 (22%), Positives = 165/398 (41%), Gaps = 57/398 (14%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A  L+ +M   G+ PS  TY+  I        +++ + +  +M+QN   P D T  +L  
Sbjct: 303 ARGLLDEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKALMEQNGCNPDDWTYNSLIY 362

Query: 372 ECSKALELDLAEALLD-QISRCTNPK--PFSAFLAACDTMDKPERAIKIFAKM-RQKLRP 427
                 +LD AE LL+  I+R   P    F+  +      ++ + A+++ + M     + 
Sbjct: 363 GLCGG-KLDEAEELLNGAIARGFTPTVITFTNLINGYCKAERIDDALRVKSNMISSNCKL 421

Query: 428 DIRTYELLFS-----------------LFGNVNAPYEEGNMF---SQVDSAKRINAIEMD 467
           D++ Y +L +                 +F N  AP    N+    S +D   ++  +   
Sbjct: 422 DLQAYGVLINVLIKKCRLKEAKETLNEMFANGLAP----NVVIYTSIIDGYCKVGMVGAA 477

Query: 468 M----------------ARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPT 511
           +                   ++ +  I  K L KA+     ++E      D  TP G   
Sbjct: 478 LEVFKLMEHEGCHPNAWTYGSLIYGLIQDKKLHKAMALITKMQE------DGITP-GVIA 530

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC-CSIIRCFKSASALVSMM 570
           Y T++    +  E   A  +F+ M+  G+ P+   YN++ D  C   R    A    S +
Sbjct: 531 YTTLIQGQCKKHEFDNAFRLFEMMEKNGLTPDEQAYNVLTDALCKSGR----AEEAYSFL 586

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           VR G     +TYT+L+      G+ D A  L++ +  EG   D+  Y+ +L+  C++ ++
Sbjct: 587 VRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADLYTYSVLLQALCKQKKL 646

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSA 668
           +    I++QM  + V+ +      + S  +  G H+ A
Sbjct: 647 NEALSILDQMTVSGVKCNIVAYTIIISEMIKEGKHDHA 684



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 82/189 (43%), Gaps = 5/189 (2%)

Query: 478 ISMKNLLKALGAEGMIRELIQYFC---DSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQ 534
           ++   ++ A   +G +    +YFC   +S   + T T N +L       +  +A  +   
Sbjct: 180 VTYNTMIMAYCKKGSLAIAHRYFCLLRESGMQMDTYTCNALLLGYCRTSDLRKACWLLMM 239

Query: 535 MKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGD 594
           M   G   N  +Y I+I      RC + A  LV MMV+DG       YT LIK L   G 
Sbjct: 240 MPLMGCRRNEYSYTILIQGLYEARCVREALVLVFMMVQDGCSLNLHMYTLLIKGLCKEGR 299

Query: 595 FDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHF 654
             +A  LLD + L G+   V  YN ++   C+ GR+     I   M QN   PD  T + 
Sbjct: 300 IHDARGLLDEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKALMEQNGCNPDDWTYNS 359

Query: 655 VFSGYVNCG 663
           +  G   CG
Sbjct: 360 LIYGL--CG 366



 Score = 46.2 bits (108), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 79/197 (40%), Gaps = 6/197 (3%)

Query: 483 LLKALGAEGMI---RELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCG 539
           L+K L  EG I   R L+             TYN ++    ++     A+ I   M+  G
Sbjct: 290 LIKGLCKEGRIHDARGLLDEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKALMEQNG 349

Query: 540 IPPNAATYNIMI-DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEA 598
             P+  TYN +I   C        A  L++  +  GF P  +T+T LI         D+A
Sbjct: 350 CNPDDWTYNSLIYGLCG--GKLDEAEELLNGAIARGFTPTVITFTNLINGYCKAERIDDA 407

Query: 599 LNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
           L +   +       D+  Y  ++    +K R+   +  + +M  N + P+      +  G
Sbjct: 408 LRVKSNMISSNCKLDLQAYGVLINVLIKKCRLKEAKETLNEMFANGLAPNVVIYTSIIDG 467

Query: 659 YVNCGFHNSAMEALQVL 675
           Y   G   +A+E  +++
Sbjct: 468 YCKVGMVGAALEVFKLM 484



 Score = 45.4 bits (106), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 72/161 (44%)

Query: 509 TPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVS 568
           T TYNT++ +  +      A   F  ++  G+  +  T N ++         + A  L+ 
Sbjct: 179 TVTYNTMIMAYCKKGSLAIAHRYFCLLRESGMQMDTYTCNALLLGYCRTSDLRKACWLLM 238

Query: 569 MMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
           MM   G      +YT LI+ L +     EAL L+ ++  +G   ++ +Y  ++K  C++G
Sbjct: 239 MMPLMGCRRNEYSYTILIQGLYEARCVREALVLVFMMVQDGCSLNLHMYTLLIKGLCKEG 298

Query: 629 RIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAM 669
           RI     ++++M    V P   T + +  GY   G    A+
Sbjct: 299 RIHDARGLLDEMPLRGVVPSVWTYNAMIDGYCKSGRMKDAL 339


>gi|41152688|dbj|BAD08213.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 762

 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 91/398 (22%), Positives = 164/398 (41%), Gaps = 16/398 (4%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ ++H    ++    A   + +M+S G++P   TY+  +  +  +       ++   M
Sbjct: 268 TYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSM 327

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR-CTNPK--PFSAFLAACDTMDKP 411
            +  L+P  +T  TL    +    L    ALLD + R   +P    F+  + A    +K 
Sbjct: 328 TKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKV 387

Query: 412 ERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQ-VDSAKRINAIEMDMA 469
           + A+ +F+KMRQ  L P++ TY  +  +     +  +    F Q +D     N I     
Sbjct: 388 DEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNII----V 443

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAM 529
             ++ HS        KA        ELI    D    L T  +N+++HS  +      + 
Sbjct: 444 YTSLIHSLCIFDKWDKA-------EELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESE 496

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
           ++F  M   G+ PN  TY+ +ID   +      A+ L+S M   G  P  +TY  LI   
Sbjct: 497 KLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGY 556

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649
                 D+AL L   +   G+  +++ YN IL+      R    + +   + ++  Q + 
Sbjct: 557 CRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVGITKSGTQLEL 616

Query: 650 STCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTL 687
           ST + +  G       + A+   Q L +  L  E  T 
Sbjct: 617 STYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTF 654



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 87/400 (21%), Positives = 158/400 (39%), Gaps = 52/400 (13%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           S++ VI+   +  +S  A     +M    + P   TY   I A+   + +   MEVL  M
Sbjct: 198 SYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTM 257

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERA 414
            +N + P                                N   +++ L    + ++P+ A
Sbjct: 258 VKNGVMP--------------------------------NCMTYNSILHGYCSSEQPKEA 285

Query: 415 IKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNI 473
           I    KMR   + PD+ TY  L           E   +F  +   KR   +E D+A    
Sbjct: 286 IGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSM--TKR--GLEPDIA---- 337

Query: 474 QHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAME 530
                +   LL+    +G + E   L+     +        +N ++ +  + ++   AM 
Sbjct: 338 -----TYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAML 392

Query: 531 IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590
           +F +M+  G+ PN  TY  +I           A      M+ +G  P  + YT+LI  L 
Sbjct: 393 VFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLC 452

Query: 591 DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650
            +  +D+A  L+  +   GI  + + +N+I+   C++GR+   E + + M +  V+P+  
Sbjct: 453 IFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVI 512

Query: 651 TCHFVFSGYVNCGFHNSAMEALQVL---SMRMLCEEVSTL 687
           T   +  GY   G  + A + L  +    M+  C   +TL
Sbjct: 513 TYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTL 552



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 123/605 (20%), Positives = 231/605 (38%), Gaps = 64/605 (10%)

Query: 59  IVDALCRGERSRASHLLLNLGHAHHSLGAD----DFFHILNYCARSPDPLFVMETWRMME 114
           ++  LC   RS+ +  LL++       G+      +  ++N   +  D      T+  M 
Sbjct: 164 LLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVINGFFKEGDSDKAYSTYHEML 223

Query: 115 EKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSM 174
           ++ I  +   Y  ++ ALCKG  +++A  ++  +  + G+ P    YNS L         
Sbjct: 224 DRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTM-VKNGVMPNCMTYNSILHGYCSSEQP 282

Query: 175 VHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFV 234
             A   L  M S  V  + VTY  L+         +   +I++   K        L   +
Sbjct: 283 KEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKR------GLEPDI 336

Query: 235 WSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRW 294
            ++  L    +    L  M AL                    LD+ +     P   V   
Sbjct: 337 ATYCTLLQGYATKGALVEMHAL--------------------LDLMVRNGIHPDHHV--- 373

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
            F+ +I A  + +    A  +  +M+  GL P+  TY   I  +     + + M   + M
Sbjct: 374 -FNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQM 432

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEAL-LDQISR--CTNPKPFSAFLAACDTMDKP 411
               L P      +L        + D AE L L+ + R  C N   F++ + +     + 
Sbjct: 433 IDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRV 492

Query: 412 ERAIKIFAKM-RQKLRPDIRTYELL---FSLFGNVN-------APYEEG----------- 449
             + K+F  M R  ++P++ TY  L   + L G ++       + +  G           
Sbjct: 493 IESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTL 552

Query: 450 -NMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL---GAEGMIRELIQYFCDSKT 505
            N + +V       A+  +M  + +  + I+   +L+ L         +EL      S T
Sbjct: 553 INGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVGITKSGT 612

Query: 506 PLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASA 565
            L   TYN +LH L +   +  A+ +F+ +    +     T+NIMI     +     A  
Sbjct: 613 QLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKD 672

Query: 566 LVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKAC 625
           L + +  +G  P   TY+ + + L++ G  +E  +L   +   G   +  + N+I++K  
Sbjct: 673 LFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLL 732

Query: 626 EKGRI 630
           ++G I
Sbjct: 733 QRGDI 737



 Score = 39.7 bits (91), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 71/167 (42%), Gaps = 9/167 (5%)

Query: 528 AMEIFKQMKTCG---IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
           A+  + +M   G   + P   TY I+I CC          A +  +V+ GF  + +T+T 
Sbjct: 68  AVSRYNRMARAGAGKVTPTVHTYGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTP 127

Query: 585 LIKILLDYGDFDEALNLL--DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642
           L+K L       +A++++   +  L  +P DV     +LK  C++ R      ++  M  
Sbjct: 128 LLKGLCADKRTSDAMDIVLRRMTELSCMP-DVFSCTILLKGLCDENRSQEALELLHMMAD 186

Query: 643 NK---VQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           ++     PD  +   V +G+   G  + A      +  R +  +V T
Sbjct: 187 DRGGGSAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVT 233


>gi|224130786|ref|XP_002328376.1| predicted protein [Populus trichocarpa]
 gi|222838091|gb|EEE76456.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 80/363 (22%), Positives = 159/363 (43%), Gaps = 22/363 (6%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           +S + +I+   R  +   A  ++ +M  LG+QP + T++  I     +  ++  + +   
Sbjct: 128 YSLNILINCLCRLNHVVFAISVLGKMFKLGIQPDAITFNTLINGRCIEGEIKEAVGLFNE 187

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKP-- 411
           M +   +P   + +T+     K+    +A  LL ++          A+    D++ K   
Sbjct: 188 MVRRGHQPDVISYSTVINGLCKSGNTSMALQLLRKMEEKGCKPNLVAYTTIIDSLCKDTL 247

Query: 412 -ERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
              A+ + ++M  + + PD+ TY  +   F ++    E   +F++             M 
Sbjct: 248 VNDAMDLLSEMVDRGIPPDVVTYSTILHGFCSLGHLNEATILFNE-------------MV 294

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP----TYNTVLHSLVEAQES 525
             N+  + ++   L+  L  EGM+ E    F ++ T  G      TYN ++       + 
Sbjct: 295 GRNVMPNTVTFTILVDGLCKEGMVSEARCVF-EAMTKKGAEPNAYTYNALMDGYCLNNQM 353

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
             A ++   M   G  P   +YNI+I+     R    A +L+  M      P T+TY+ L
Sbjct: 354 DEAQKVLDIMVDKGCAPVVHSYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTL 413

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           ++ L   G   EALNL   +   G+  D++ Y+T+L   C+ G +D    +++ M ++K+
Sbjct: 414 MQGLCQVGRPQEALNLFKEMCSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKI 473

Query: 646 QPD 648
           +PD
Sbjct: 474 EPD 476



 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 93/397 (23%), Positives = 161/397 (40%), Gaps = 51/397 (12%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           S+S VI+   ++ N+ +A QL+ +M+  G +P+   Y   I ++  D  + + M++L  M
Sbjct: 199 SYSTVINGLCKSGNTSMALQLLRKMEEKGCKPNLVAYTTIIDSLCKDTLVNDAMDLLSEM 258

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPKPFSAFLAACDTMDKP-- 411
               + P   T +T+         L+ A  L ++ + R   P   + F    D + K   
Sbjct: 259 VDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVT-FTILVDGLCKEGM 317

Query: 412 -ERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
              A  +F  M +K   P+  TY          NA  +   + +Q+D A+++  I +D  
Sbjct: 318 VSEARCVFEAMTKKGAEPNAYTY----------NALMDGYCLNNQMDEAQKVLDIMVDKG 367

Query: 470 RNNIQHSH--------------------------------ISMKNLLKALGAEGMIRELI 497
              + HS+                                ++   L++ L   G  +E +
Sbjct: 368 CAPVVHSYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVGRPQEAL 427

Query: 498 QYF---CDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCC 554
             F   C S       TY+T+L  L +      A+++ K M+   I P+   YNI+I+  
Sbjct: 428 NLFKEMCSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKIEPDIVLYNILIEGM 487

Query: 555 SIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDV 614
            I    + A  L S +  DG  P   TYT +IK LL  G  DEA  L   +  +G   + 
Sbjct: 488 FIAGKLEVAKELFSKLFADGIQPTIRTYTIMIKGLLKEGLSDEAYELFRKMEDDGFLPNS 547

Query: 615 LLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
             YN I++   +         +I++M   +   D ST
Sbjct: 548 CSYNVIIQGFLQNQDSSTAIRLIDEMVGKRFSADSST 584



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 54/256 (21%), Positives = 109/256 (42%), Gaps = 17/256 (6%)

Query: 412 ERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           + A+ +F +M R+  +PD+ +Y  +      +N   + GN    +   ++       M  
Sbjct: 179 KEAVGLFNEMVRRGHQPDVISYSTV------INGLCKSGNTSMALQLLRK-------MEE 225

Query: 471 NNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHR 527
              + + ++   ++ +L  + ++ +   L+    D   P    TY+T+LH        + 
Sbjct: 226 KGCKPNLVAYTTIIDSLCKDTLVNDAMDLLSEMVDRGIPPDVVTYSTILHGFCSLGHLNE 285

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A  +F +M    + PN  T+ I++D          A  +   M + G  P   TY AL+ 
Sbjct: 286 ATILFNEMVGRNVMPNTVTFTILVDGLCKEGMVSEARCVFEAMTKKGAEPNAYTYNALMD 345

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
                   DEA  +LD++  +G    V  YN ++   C++ R+D  + ++ +M + ++ P
Sbjct: 346 GYCLNNQMDEAQKVLDIMVDKGCAPVVHSYNILINGYCKRRRLDEAKSLLVEMSEKELTP 405

Query: 648 DPSTCHFVFSGYVNCG 663
           D  T   +  G    G
Sbjct: 406 DTVTYSTLMQGLCQVG 421



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 105/514 (20%), Positives = 202/514 (39%), Gaps = 84/514 (16%)

Query: 44  MGLNEESISKATQMQIVDALC-RGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPD 102
           +G+  ++I+  T   +++  C  GE   A  L   +    H      +  ++N   +S +
Sbjct: 156 LGIQPDAITFNT---LINGRCIEGEIKEAVGLFNEMVRRGHQPDVISYSTVINGLCKSGN 212

Query: 103 PLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYN 162
               ++  R MEEK    N   Y  ++ +LCK   + +A +L+  + +R GI P +  Y+
Sbjct: 213 TSMALQLLRKMEEKGCKPNLVAYTTIIDSLCKDTLVNDAMDLLSEMVDR-GIPPDVVTYS 271

Query: 163 SFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH 222
           + L     L  +  A +  + M  R V  N VT+T L+     +  +S    ++E   K 
Sbjct: 272 TILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTILVDGLCKEGMVSEARCVFEAMTKK 331

Query: 223 YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIP 282
            +          +++  L D                 G    N+  E +     LDI + 
Sbjct: 332 GA------EPNAYTYNALMD-----------------GYCLNNQMDEAQ---KVLDIMVD 365

Query: 283 LNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDR 342
               PV+     S++ +I+   + +    A+ L+++M    L P + TY   ++ +    
Sbjct: 366 KGCAPVVH----SYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVG 421

Query: 343 GLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFL 402
             +  + + K M  + L P   T +TL     K   LD                      
Sbjct: 422 RPQEALNLFKEMCSSGLLPDLMTYSTLLDGLCKHGHLD---------------------- 459

Query: 403 AACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMF--SQVDSAK 459
                      A+K+   M++ K+ PDI  Y +L            EG MF   +++ AK
Sbjct: 460 ----------EALKLLKSMQESKIEPDIVLYNILI-----------EG-MFIAGKLEVAK 497

Query: 460 RI-NAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHS 518
            + + +  D  +  I+   I +K LLK  G      EL +   D      + +YN ++  
Sbjct: 498 ELFSKLFADGIQPTIRTYTIMIKGLLKE-GLSDEAYELFRKMEDDGFLPNSCSYNVIIQG 556

Query: 519 LVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID 552
            ++ Q+S  A+ +  +M       +++T+ +++D
Sbjct: 557 FLQNQDSSTAIRLIDEMVGKRFSADSSTFQMLLD 590



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/175 (21%), Positives = 76/175 (43%)

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           +   L S+ + ++    + +  QM   G+  N  + NI+I+C   +     A +++  M 
Sbjct: 95  FGRFLGSIAKKKQYSTVVSLCNQMDLFGVTHNVYSLNILINCLCRLNHVVFAISVLGKMF 154

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
           + G  P  +T+  LI      G+  EA+ L + +   G   DV+ Y+T++   C+ G   
Sbjct: 155 KLGIQPDAITFNTLINGRCIEGEIKEAVGLFNEMVRRGHQPDVISYSTVINGLCKSGNTS 214

Query: 632 VIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           +   ++ +M +   +P+      +          N AM+ L  +  R +  +V T
Sbjct: 215 MALQLLRKMEEKGCKPNLVAYTTIIDSLCKDTLVNDAMDLLSEMVDRGIPPDVVT 269


>gi|222612706|gb|EEE50838.1| hypothetical protein OsJ_31258 [Oryza sativa Japonica Group]
          Length = 897

 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 83/338 (24%), Positives = 145/338 (42%), Gaps = 20/338 (5%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           F+ VI  C        A +L   M   G QP +HTY   +  +     + + + +L+ M+
Sbjct: 298 FNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREME 357

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKPE 412
           +    P   T   +     K    D   ALL+++S      N + ++  + A     + +
Sbjct: 358 KKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMD 417

Query: 413 RAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471
            A+ +  +MR Q   PDI +Y  +     N     E  +MF         N +E  +  N
Sbjct: 418 EAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFE--------NLLEEGVVAN 469

Query: 472 NIQHSHISMKNLLKALGAEGMIR---ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRA 528
            I ++ I +  LL+    +  +R   E+I + C     L   +YN ++ ++ +     R+
Sbjct: 470 GITYNTI-IHALLRDGRWQDAVRLAKEMILHGCS----LDVVSYNGLIKAMCKDGNVDRS 524

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
           + + ++M   GI PN  +YNI+I      R  + A  L   M+  G  P  +TY  LI  
Sbjct: 525 LVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLING 584

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE 626
           L   G    ALNLL+ +  E +  D++ YN ++   C+
Sbjct: 585 LCKMGWMHAALNLLEKLHNENVHPDIITYNILISWHCK 622



 Score = 76.3 bits (186), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 85/407 (20%), Positives = 170/407 (41%), Gaps = 29/407 (7%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           +  VIHA         A  L+ +M  +G     +T+D  +R +     +R    ++  M 
Sbjct: 197 YQTVIHALCDQGGVTEAATLLNEMLLMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMM 256

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAI 415
                P   T   L     +  + D A A+L ++    N   F+  +  C    K   A 
Sbjct: 257 TKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPE-LNVVLFNTVIGGCLAEGKLAEAT 315

Query: 416 KIFAKMRQK-LRPDIRTYELL---FSLFGNVNAPY-------EEG------------NMF 452
           +++  M  K  +PD  TY +L       G + +         ++G            + F
Sbjct: 316 ELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSF 375

Query: 453 SQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP-- 510
            +        A+  +M+   +  +      ++ AL  +G + E +    + ++    P  
Sbjct: 376 CKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDI 435

Query: 511 -TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSM 569
            +YNT+++ L   ++   A  +F+ +   G+  N  TYN +I        ++ A  L   
Sbjct: 436 CSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKE 495

Query: 570 MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
           M+  G     ++Y  LIK +   G+ D +L LL+ ++ +GI  + + YN ++ + C++ R
Sbjct: 496 MILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERR 555

Query: 630 I-DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
           + D +E + +QM    + PD  T + + +G    G+ ++A+  L+ L
Sbjct: 556 VRDALE-LSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKL 601



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 89/206 (43%), Gaps = 12/206 (5%)

Query: 483 LLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPP 542
           L +A  A  ++R + ++ C     L    Y TV+H+L +      A  +  +M   G   
Sbjct: 172 LGRADEALALLRGMARHGCVPDAVL----YQTVIHALCDQGGVTEAATLLNEMLLMGCAA 227

Query: 543 NAATY-NIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNL 601
           +  T+ +++   C + R  + A+ LV  M+  G  P  MTY  L++ L      DEA  +
Sbjct: 228 DVNTFDDVVRGMCGLGR-VREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAM 286

Query: 602 LDLVSLEGIPH-DVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYV 660
           L  V     P  +V+L+NT++     +G++     + E M     QPD  T   +  G  
Sbjct: 287 LGRV-----PELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLC 341

Query: 661 NCGFHNSAMEALQVLSMRMLCEEVST 686
             G   SA+  L+ +  +     V T
Sbjct: 342 KLGRIGSAVRLLREMEKKGFAPNVVT 367



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 51/119 (42%)

Query: 540 IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEAL 599
           +PP   T+ +       +     A AL+  M R G  P  + Y  +I  L D G   EA 
Sbjct: 155 VPPTTFTFGVAARALCRLGRADEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAA 214

Query: 600 NLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
            LL+ + L G   DV  ++ +++  C  GR+     ++++M      P   T  F+  G
Sbjct: 215 TLLNEMLLMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQG 273



 Score = 43.9 bits (102), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 42/95 (44%)

Query: 569 MMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
           M+ RD   P T T+    + L   G  DEAL LL  ++  G   D +LY T++   C++G
Sbjct: 149 MVHRDRVPPTTFTFGVAARALCRLGRADEALALLRGMARHGCVPDAVLYQTVIHALCDQG 208

Query: 629 RIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
            +     ++ +M       D +T   V  G    G
Sbjct: 209 GVTEAATLLNEMLLMGCAADVNTFDDVVRGMCGLG 243


>gi|449451888|ref|XP_004143692.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Cucumis sativus]
 gi|449529106|ref|XP_004171542.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Cucumis sativus]
          Length = 783

 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 99/427 (23%), Positives = 168/427 (39%), Gaps = 72/427 (16%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A  L+L M+S GL P+ HTY+  +        L+   +V++IM +NNL P   T   L  
Sbjct: 267 ARDLLLDMKSKGLSPNKHTYNMLVCGYCRLGLLKEATKVIEIMTRNNLLPTVWTYNMLVN 326

Query: 372 ECSKALELDLAEALLDQISR----------------CTNPKPFSAFLAACDTMDKP---- 411
                 ++D A  + D++ +                C+  +  S   +  + MDK     
Sbjct: 327 GFCNDGKIDEAFRIRDEMEKMNVLPDVVTYNTLIDGCSQWRDSSEVYSLIEEMDKKGVKC 386

Query: 412 ------------------ERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMF 452
                               A     KM +  L PD  TY    +L G      + G  F
Sbjct: 387 NAVTYNIILKWMCKKGNMTEATTTLDKMEENGLSPDCVTYN---TLIGAYCKAGKMGKAF 443

Query: 453 SQVDSAKRINAIEMDM-ARNNIQHSHISMK------NLLKALGAEGMIRE-------LIQ 498
             +D       +++D    N I H     K      NLL +    G I +       ++ 
Sbjct: 444 RMMDEMTS-KGLKIDTWTLNTILHCLCVEKKLDEAYNLLCSASKRGYILDEVSYGILILG 502

Query: 499 YFCDSKTPLG---------------TPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPN 543
           YF D K                   T TYN+V+  L ++++  +A++   +M   G+ P+
Sbjct: 503 YFKDEKGDRALNLWDEMKERQIMPSTITYNSVIGGLCQSRKVDQAIDKLNEMLENGLVPD 562

Query: 544 AATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLD 603
             TYNI+I    +    + A    + M+ + F P   T   L++ L   G  ++AL L +
Sbjct: 563 ETTYNIIIHGFCLEGNVEKAFQFHNEMIENLFKPDVYTCNILLRGLCREGMLEKALKLFN 622

Query: 604 LVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
            +  +G   DV+ YNTI+   C++G+ +    ++ +M   K+ PD  T   + +   + G
Sbjct: 623 TLVSKGKDIDVVTYNTIISSLCKEGKFENAYDLLTEMEAKKLGPDQYTYKVIIAALTDAG 682

Query: 664 FHNSAME 670
               A E
Sbjct: 683 RIKEAEE 689



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 77/337 (22%), Positives = 140/337 (41%), Gaps = 55/337 (16%)

Query: 395 PKPFSAFL----AACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEG 449
           P+P    L     A   MD+P  A +IF KM++   RP++ T   L +    V  P    
Sbjct: 136 PEPSKELLDTSIGAYVQMDQPHLATQIFNKMKRLNYRPNLLTCNTLMNSL--VRYPSS-- 191

Query: 450 NMFSQVDSAKRI--NAIEMDMARNNIQHSHISMKNLL--KALGAEGMIRELIQYFCDSKT 505
              S +  A+++  ++I++ +  N    + +     L  K   A   + ++ ++ C    
Sbjct: 192 ---SSILLARQVLKDSIKLGVVPNTNSFNILIYGYCLESKVKDALDWVNKMSEFGC---V 245

Query: 506 PLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASA 565
           P  T +YNT+L +L++ +    A ++   MK+ G+ PN  TYN+++     +   K A+ 
Sbjct: 246 P-DTVSYNTILDALLKRRLLQEARDLLLDMKSKGLSPNKHTYNMLVCGYCRLGLLKEATK 304

Query: 566 LVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNT------ 619
           ++ +M R+   P   TY  L+    + G  DEA  + D +    +  DV+ YNT      
Sbjct: 305 VIEIMTRNNLLPTVWTYNMLVNGFCNDGKIDEAFRIRDEMEKMNVLPDVVTYNTLIDGCS 364

Query: 620 -----------------------------ILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650
                                        ILK  C+KG +      +++M +N + PD  
Sbjct: 365 QWRDSSEVYSLIEEMDKKGVKCNAVTYNIILKWMCKKGNMTEATTTLDKMEENGLSPDCV 424

Query: 651 TCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTL 687
           T + +   Y   G    A   +  ++ + L  +  TL
Sbjct: 425 TYNTLIGAYCKAGKMGKAFRMMDEMTSKGLKIDTWTL 461



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 110/572 (19%), Positives = 219/572 (38%), Gaps = 101/572 (17%)

Query: 93  ILNYCARSPDPLFVMETWRMMEEK-EIGL--NNKCYLLMMQALCKGGYLEEASNLIYFLG 149
           ++N   R P    ++   +++++  ++G+  N   + +++   C    +++A + +  + 
Sbjct: 181 LMNSLVRYPSSSSILLARQVLKDSIKLGVVPNTNSFNILIYGYCLESKVKDALDWVNKMS 240

Query: 150 ERYGIYPILPVYNSFLGACAKLHSMVHA-NLCLDLMDSRMVGKNEVTYTELLKLAVWQKN 208
           E +G  P    YN+ L A  K   +  A +L LD M S+ +  N+ TY  L         
Sbjct: 241 E-FGCVPDTVSYNTILDALLKRRLLQEARDLLLD-MKSKGLSPNKHTYNML--------- 289

Query: 209 LSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYI-NRT 267
                                    V  + RL  LK A + ++ M    ++  ++  N  
Sbjct: 290 -------------------------VCGYCRLGLLKEATKVIEIMTRNNLLPTVWTYNML 324

Query: 268 SEGRLRSSRLDIPIPL-NALPVMKVLR--WSFSDVIHACGRTQNSGLAEQLMLQMQSLGL 324
             G     ++D    + + +  M VL    +++ +I  C + ++S     L+ +M   G+
Sbjct: 325 VNGFCNDGKIDEAFRIRDEMEKMNVLPDVVTYNTLIDGCSQWRDSSEVYSLIEEMDKKGV 384

Query: 325 QPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEA 384
           + ++ TY+  ++ +     +      L  M++N L P   T  TL     KA ++  A  
Sbjct: 385 KCNAVTYNIILKWMCKKGNMTEATTTLDKMEENGLSPDCVTYNTLIGAYCKAGKMGKAFR 444

Query: 385 LLDQISR-----------------CTNPKPFSAFLAACDTM------------------- 408
           ++D+++                  C   K   A+   C                      
Sbjct: 445 MMDEMTSKGLKIDTWTLNTILHCLCVEKKLDEAYNLLCSASKRGYILDEVSYGILILGYF 504

Query: 409 --DKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSA-KRINAI 464
             +K +RA+ ++ +M+++ + P   TY    S+ G +           +VD A  ++N  
Sbjct: 505 KDEKGDRALNLWDEMKERQIMPSTITYN---SVIGGLCQS-------RKVDQAIDKLN-- 552

Query: 465 EMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVE 521
             +M  N +     +   ++     EG + +  Q+  +    L  P   T N +L  L  
Sbjct: 553 --EMLENGLVPDETTYNIIIHGFCLEGNVEKAFQFHNEMIENLFKPDVYTCNILLRGLCR 610

Query: 522 AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMT 581
                +A+++F  + + G   +  TYN +I        F++A  L++ M      P   T
Sbjct: 611 EGMLEKALKLFNTLVSKGKDIDVVTYNTIISSLCKEGKFENAYDLLTEMEAKKLGPDQYT 670

Query: 582 YTALIKILLDYGDFDEALNLLDLVSLEGIPHD 613
           Y  +I  L D G   EA      +   GI HD
Sbjct: 671 YKVIIAALTDAGRIKEAEEFTLKMVESGIVHD 702


>gi|413937324|gb|AFW71875.1| hypothetical protein ZEAMMB73_225396 [Zea mays]
          Length = 818

 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 87/372 (23%), Positives = 154/372 (41%), Gaps = 20/372 (5%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDST-IATLS 370
           A  L+ +M++ G +P   TY+  I A+ ++  +   + +L  +  +  KP   T    L 
Sbjct: 305 AMALLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSNLPSHGCKPDAVTYTPVLK 364

Query: 371 VECSKALELDLAEALLDQISRCTNPK--PFSAFLAACDTMDKPERAIKIFAKMRQ-KLRP 427
             C      ++ E L +  S    P    F+  + +       +RAI++   M +     
Sbjct: 365 SLCGSERWKEVEELLAEMTSNNCAPDEVTFNTIVTSLCQQGLVDRAIEVVDHMSEHGCVA 424

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL 487
           DI TY  +     +V      G +   V+   R+ +          +   I+   +LK L
Sbjct: 425 DIVTYSSILDGLCDV------GRVDDAVELLSRLKSY-------GCKPDTIAYTTVLKGL 471

Query: 488 GAEGM---IRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNA 544
            +        EL+     S  P    T+NTV+ SL +     RA+ + +QM   G  P+ 
Sbjct: 472 CSTEQWERAEELMAEMLCSDCPPDEVTFNTVVASLCQKGLVDRAIRVVEQMSENGCSPDI 531

Query: 545 ATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDL 604
            TYN +ID      C   A  L+S +   G  P  +T+  L+K L     +++A  L+  
Sbjct: 532 VTYNCIIDGLCNESCIDDAMELLSDLQSCGCKPDIVTFNTLLKGLCGVDRWEDAEQLMAN 591

Query: 605 VSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGF 664
           +     P D L +NT++   C+KG +      ++ M +N   P+ ST   V    +  G 
Sbjct: 592 MMRSNCPPDELTFNTVITSLCQKGLLTQAIETLKIMAENGCVPNSSTYSIVVDALLKAGK 651

Query: 665 HNSAMEALQVLS 676
             +A+E L  ++
Sbjct: 652 AQAALELLSGMT 663



 Score = 85.9 bits (211), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 74/268 (27%), Positives = 126/268 (47%), Gaps = 19/268 (7%)

Query: 413 RAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471
           +A+ +  +MR K   PDI TY +L      +NA   EG+    VD A  I +   ++  +
Sbjct: 304 QAMALLDEMRAKGCEPDIVTYNVL------INAMCNEGD----VDEALNILS---NLPSH 350

Query: 472 NIQHSHISMKNLLKAL-GAE--GMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRA 528
             +   ++   +LK+L G+E    + EL+     +       T+NT++ SL +     RA
Sbjct: 351 GCKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNCAPDEVTFNTIVTSLCQQGLVDRA 410

Query: 529 MEIFKQMKTCGIPPNAATYNIMID-CCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           +E+   M   G   +  TY+ ++D  C + R    A  L+S +   G  P T+ YT ++K
Sbjct: 411 IEVVDHMSEHGCVADIVTYSSILDGLCDVGR-VDDAVELLSRLKSYGCKPDTIAYTTVLK 469

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
            L     ++ A  L+  +     P D + +NT++   C+KG +D    ++EQM +N   P
Sbjct: 470 GLCSTEQWERAEELMAEMLCSDCPPDEVTFNTVVASLCQKGLVDRAIRVVEQMSENGCSP 529

Query: 648 DPSTCHFVFSGYVNCGFHNSAMEALQVL 675
           D  T + +  G  N    + AME L  L
Sbjct: 530 DIVTYNCIIDGLCNESCIDDAMELLSDL 557



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 137/651 (21%), Positives = 253/651 (38%), Gaps = 69/651 (10%)

Query: 50  SISKATQMQIVDALCRGERSRASHLLLN-LGHAHHSLGADDFFHILNYCARSPDPLFVME 108
           S +  T   +V+  CR  R   +  L+N +     +   +     L    R PD L V +
Sbjct: 216 SATVVTYNTMVNGYCRAGRIEDARRLINGMPFPPDTFTFNPLIRALCVRGRIPDALAVFD 275

Query: 109 TWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGAC 168
               M  +    +   Y +++ A CK     +A  L+  +  + G  P +  YN  + A 
Sbjct: 276 D---MLHRGCSPSVVTYSILLDATCKESGYRQAMALLDEMRAK-GCEPDIVTYNVLINAM 331

Query: 169 AKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYSLSI 227
                +  A   L  + S     + VTYT +LK     +    V E+  +    + +   
Sbjct: 332 CNEGDVDEALNILSNLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNCAPDE 391

Query: 228 FSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALP 287
            +    V S  +   +  A E + HM     +  +           SS LD         
Sbjct: 392 VTFNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIVT--------YSSILD--------- 434

Query: 288 VMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNG 347
                     DV    GR  +   A +L+ +++S G +P +  Y   ++ + S       
Sbjct: 435 -------GLCDV----GRVDD---AVELLSRLKSYGCKPDTIAYTTVLKGLCSTEQWERA 480

Query: 348 MEVLKIMQQNNLKPQDSTIATLSVE-CSKALELDLAEALLDQISRCTNPKPFSAFLAACD 406
            E++  M  ++  P + T  T+    C K L +D A  +++Q+S          +    D
Sbjct: 481 EELMAEMLCSDCPPDEVTFNTVVASLCQKGL-VDRAIRVVEQMSENGCSPDIVTYNCIID 539

Query: 407 TMDKP---ERAIKIFAKMRQ-KLRPDIRTYE-LLFSLFGNVNAPYEEGNMFSQVDSAKRI 461
            +      + A+++ + ++    +PDI T+  LL  L G              VD  +  
Sbjct: 540 GLCNESCIDDAMELLSDLQSCGCKPDIVTFNTLLKGLCG--------------VDRWEDA 585

Query: 462 NAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYF---CDSKTPLGTPTYNTVLHS 518
             +  +M R+N     ++   ++ +L  +G++ + I+      ++     + TY+ V+ +
Sbjct: 586 EQLMANMMRSNCPPDELTFNTVITSLCQKGLLTQAIETLKIMAENGCVPNSSTYSIVVDA 645

Query: 519 LVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQ 578
           L++A ++  A+E+   M T G P +  TYN +I   +     + A  L+ +MV +G  P 
Sbjct: 646 LLKAGKAQAALELLSGM-TNGTP-DLITYNTVISNLTKAGKMEEALDLLRVMVSNGLCPD 703

Query: 579 TMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIE 638
           T TY +L   +      D A+ +L  V   G+  D   YN +L   C   R D+      
Sbjct: 704 TTTYRSLAYGVCREDGTDRAVRMLRRVQDTGLSPDTTFYNDVLLGFCRDRRTDLAIDCFA 763

Query: 639 QMHQNKVQPDPSTCHFVFSGYVNCGFHNSA------MEALQVLSMRMLCEE 683
            M  +   PD ST   +       G  + A      + +L VL  +++ EE
Sbjct: 764 HMVSSGCMPDESTYVILLEALAYGGLLDEAKRLLASLCSLGVLDKKLIEEE 814



 Score = 82.4 bits (202), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 102/226 (45%), Gaps = 4/226 (1%)

Query: 506 PLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASA 565
           P  T T+N ++ +L        A+ +F  M   G  P+  TY+I++D       ++ A A
Sbjct: 248 PPDTFTFNPLIRALCVRGRIPDALAVFDDMLHRGCSPSVVTYSILLDATCKESGYRQAMA 307

Query: 566 LVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKAC 625
           L+  M   G  P  +TY  LI  + + GD DEALN+L  +   G   D + Y  +LK  C
Sbjct: 308 LLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSNLPSHGCKPDAVTYTPVLKSLC 367

Query: 626 EKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVS 685
              R   +E ++ +M  N   PD  T + + +     G  + A+E +  +S      ++ 
Sbjct: 368 GSERWKEVEELLAEMTSNNCAPDEVTFNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIV 427

Query: 686 TLEEKRSDFEDLILAEDS-EAESRILQF-CEDSNENLAFTAALLQL 729
           T         D+   +D+ E  SR+  + C+   + +A+T  L  L
Sbjct: 428 TYSSILDGLCDVGRVDDAVELLSRLKSYGCKP--DTIAYTTVLKGL 471


>gi|225430498|ref|XP_002283327.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic [Vitis vinifera]
 gi|296082142|emb|CBI21147.3| unnamed protein product [Vitis vinifera]
          Length = 1113

 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 90/394 (22%), Positives = 159/394 (40%), Gaps = 28/394 (7%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           ++F+  I   GR      A  ++ +M   G  P   TY   I A+ +   L N  E+   
Sbjct: 263 YTFTICIRILGRAGKIDEAYGILKRMDDAGCGPDVVTYTVLIDALCNAGKLNNAKELFLK 322

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPER 413
           M+ ++ KP   T  TL  + S   +LD  +    ++           F    D + K  +
Sbjct: 323 MKASSHKPDRVTYITLLDKFSDHGDLDAIKEFWSEMEADGYLPDVVTFTILIDALCKVGK 382

Query: 414 AIKIFAKM----RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
             + F  +    +Q + P++ TY  L      +N   E   +F+ ++S          + 
Sbjct: 383 VDEAFGTLDVMKKQGVAPNLHTYNTLICGLLRLNRLDEALELFNSMES----------LG 432

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTY---NTVLHSLVEAQESH 526
                +++I     +   G  G   + I+ F   KT    P     N  L+SL E     
Sbjct: 433 LETTAYTYIL---FIDYYGKSGESGKAIKTFEKMKTNGIVPNIVACNASLYSLAEQGRLE 489

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
            A E F  +K CG+ P+A TYNI++ C         A  L+S M  +G  P+ +   +LI
Sbjct: 490 EAKEFFNGLKKCGLAPDAITYNILMRCYGKAGRVDDAIKLLSEMEENGCDPEVVIINSLI 549

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
             L      DEA  +   +    +   V+ YNT+L    ++GR+     + + M  +   
Sbjct: 550 DTLYKADRVDEAWKMFQRMKEMKLAPTVVTYNTLLAGLGKEGRVQEATALFKGMIADDCP 609

Query: 647 PDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRML 680
           P+  +    F+  ++C   N  ++    L+++ML
Sbjct: 610 PNTIS----FNTLLDCLCKNGEVD----LALKML 635



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 140/677 (20%), Positives = 275/677 (40%), Gaps = 61/677 (9%)

Query: 54  ATQMQIVDALCR-GERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRM 112
            T   ++DALC  G+ + A  L L +  + H      +  +L+  +   D   + E W  
Sbjct: 298 VTYTVLIDALCNAGKLNNAKELFLKMKASSHKPDRVTYITLLDKFSDHGDLDAIKEFWSE 357

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
           ME      +   + +++ ALCK G ++EA   +  + ++ G+ P L  YN+ +    +L+
Sbjct: 358 MEADGYLPDVVTFTILIDALCKVGKVDEAFGTLDVM-KKQGVAPNLHTYNTLICGLLRLN 416

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNL---SAVHEIWEDYIKHYSLSIFS 229
            +  A    + M+S  +G     YT +L +  + K+     A+    +        +I +
Sbjct: 417 RLDEALELFNSMES--LGLETTAYTYILFIDYYGKSGESGKAIKTFEKMKTNGIVPNIVA 474

Query: 230 LRKFVWSFT---RLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPL--- 283
               ++S     RL + K  +  L+    LA     Y N       ++ R+D  I L   
Sbjct: 475 CNASLYSLAEQGRLEEAKEFFNGLKK-CGLAPDAITY-NILMRCYGKAGRVDDAIKLLSE 532

Query: 284 ---NALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVS 340
              N      V+  S  D ++   R      A ++  +M+ + L P+  TY+  +  +  
Sbjct: 533 MEENGCDPEVVIINSLIDTLYKADRVDE---AWKMFQRMKEMKLAPTVVTYNTLLAGLGK 589

Query: 341 DRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP--- 397
           +  ++    + K M  ++  P   +  TL     K  E+DLA  +L +++   N  P   
Sbjct: 590 EGRVQEATALFKGMIADDCPPNTISFNTLLDCLCKNGEVDLALKMLFRMTE-MNCFPDVL 648

Query: 398 -FSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTY---------------------ELL 435
            ++  +      ++   A  +F +M++ + PD  T                      E +
Sbjct: 649 TYNTVIYGLIKENRVNYAFWLFHQMKKVIYPDYVTLCTLLPGVIKDGRIEDAFRVAKEFV 708

Query: 436 FSLFGNVNAPYEE---GNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGM 492
             +  + +  + E   G +  + +  + I   E  +  N I      +  L+K L   G 
Sbjct: 709 HHVGDHADGSFWEDLMGGILIEAEIGQSILFAE-SLVCNTICEDDSVLIPLVKFLCKHGK 767

Query: 493 IRELIQYFCD-SKTPLGTPT---YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYN 548
             +    F   +K+   TP+   YN+++  L++A+ +  A  +F +MK  G  P+  TYN
Sbjct: 768 AVDAYNVFLKLTKSFCITPSLEAYNSLIDGLLKARLTEMAWGLFYKMKNAGCTPDVFTYN 827

Query: 549 IMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNL-LDLVSL 607
           + +D        K    L   M+  G  P T+T+  +I  L+     D+A++L  DL+S 
Sbjct: 828 LFLDALGKSGKIKELFDLYEEMLFRGCKPNTITHNIVIFGLVKSNSLDKAIDLYYDLMSG 887

Query: 608 EGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNS 667
           +  P     Y  ++    + GR++  +   E+M      P+    + + +G+   G   +
Sbjct: 888 DFSPTP-WTYGPLIDGLLKLGRLEEAKQFFEEMLDYGCMPNCPLYNILMNGFGKQGDVET 946

Query: 668 AMEALQVLSMRMLCEEV 684
           A E  +    RM+ E +
Sbjct: 947 ACELFR----RMVKEGI 959



 Score = 65.9 bits (159), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 62/267 (23%), Positives = 113/267 (42%), Gaps = 17/267 (6%)

Query: 390  SRCTNPKPFSAFLAACDTMDKP---ERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAP 445
            S C  P    A+ +  D + K    E A  +F KM+     PD+ TY L     G     
Sbjct: 781  SFCITPS-LEAYNSLIDGLLKARLTEMAWGLFYKMKNAGCTPDVFTYNLFLDALGKSGKI 839

Query: 446  YEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKT 505
             E  +++ ++        +      N I H +I +  L+K+   +  I           +
Sbjct: 840  KELFDLYEEM--------LFRGCKPNTITH-NIVIFGLVKSNSLDKAIDLYYDLMSGDFS 890

Query: 506  PLGTP-TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSAS 564
            P  TP TY  ++  L++      A + F++M   G  PN   YNI+++        ++A 
Sbjct: 891  P--TPWTYGPLIDGLLKLGRLEEAKQFFEEMLDYGCMPNCPLYNILMNGFGKQGDVETAC 948

Query: 565  ALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKA 624
             L   MV++G  P   +Y+ ++  L   G  D+AL+  + + L G+  D++ YN ++   
Sbjct: 949  ELFRRMVKEGIRPDLKSYSIMVDCLCMVGKVDDALHYFEELKLSGLDPDLVCYNLMINGL 1008

Query: 625  CEKGRIDVIEFIIEQMHQNKVQPDPST 651
                R++    + ++M    + PD  T
Sbjct: 1009 GRSQRVEEALSLFDEMRNRGITPDLYT 1035



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 100/457 (21%), Positives = 186/457 (40%), Gaps = 35/457 (7%)

Query: 106 VMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFL 165
           VM   + ME   +  N   + + ++ L + G ++EA  ++  + +  G  P +  Y   +
Sbjct: 246 VMGLLQEMESLGLRPNIYTFTICIRILGRAGKIDEAYGILKRMDDA-GCGPDVVTYTVLI 304

Query: 166 GACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDY-IKHYS 224
            A      + +A      M +     + VTY  LL       +L A+ E W +     Y 
Sbjct: 305 DALCNAGKLNNAKELFLKMKASSHKPDRVTYITLLDKFSDHGDLDAIKEFWSEMEADGYL 364

Query: 225 LSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYI-NRTSEGRLRSSRLDIPIPL 283
             + +    + +  ++  +  A+ TL  M    +   L+  N    G LR +RLD  + L
Sbjct: 365 PDVVTFTILIDALCKVGKVDEAFGTLDVMKKQGVAPNLHTYNTLICGLLRLNRLDEALEL 424

Query: 284 -NALPVMKVLRWSFSDV--IHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVS 340
            N++  + +   +++ +  I   G++  SG A +   +M++ G+ P+    +  + ++  
Sbjct: 425 FNSMESLGLETTAYTYILFIDYYGKSGESGKAIKTFEKMKTNGIVPNIVACNASLYSLAE 484

Query: 341 DRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSA 400
              L    E    +++  L P   T   L     KA  +D A  LL ++           
Sbjct: 485 QGRLEEAKEFFNGLKKCGLAPDAITYNILMRCYGKAGRVDDAIKLLSEMEENGCDPEVVI 544

Query: 401 FLAACDTMDKPER---AIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVD 456
             +  DT+ K +R   A K+F +M++ KL P + TY  L +  G      +EG +     
Sbjct: 545 INSLIDTLYKADRVDEAWKMFQRMKEMKLAPTVVTYNTLLAGLG------KEGRV----- 593

Query: 457 SAKRINAIEMDMARNNIQHSHISMKNLLKALGAEG-------MIRELIQYFCDSKTPLGT 509
             +   A+   M  ++   + IS   LL  L   G       M+  + +  C        
Sbjct: 594 --QEATALFKGMIADDCPPNTISFNTLLDCLCKNGEVDLALKMLFRMTEMNCFPD----V 647

Query: 510 PTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAAT 546
            TYNTV++ L++    + A  +F QMK   I P+  T
Sbjct: 648 LTYNTVIYGLIKENRVNYAFWLFHQMKKV-IYPDYVT 683



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/300 (21%), Positives = 127/300 (42%), Gaps = 20/300 (6%)

Query: 295  SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
            +++ +I    + + + +A  L  +M++ G  P   TY+ F+ A+     ++   ++ + M
Sbjct: 790  AYNSLIDGLLKARLTEMAWGLFYKMKNAGCTPDVFTYNLFLDALGKSGKIKELFDLYEEM 849

Query: 355  QQNNLKPQDSTIATLSVECSKALELDLA-EALLDQISRCTNPKP--FSAFLAACDTMDKP 411
                 KP   T   +     K+  LD A +   D +S   +P P  +   +     + + 
Sbjct: 850  LFRGCKPNTITHNIVIFGLVKSNSLDKAIDLYYDLMSGDFSPTPWTYGPLIDGLLKLGRL 909

Query: 412  ERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
            E A + F +M      P+   Y +L + FG      ++G++ +  +  +R       M +
Sbjct: 910  EEAKQFFEEMLDYGCMPNCPLYNILMNGFG------KQGDVETACELFRR-------MVK 956

Query: 471  NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHR 527
              I+    S   ++  L   G + + + YF + K     P    YN +++ L  +Q    
Sbjct: 957  EGIRPDLKSYSIMVDCLCMVGKVDDALHYFEELKLSGLDPDLVCYNLMINGLGRSQRVEE 1016

Query: 528  AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
            A+ +F +M+  GI P+  TYN +I    I    + A  +   +   G  P   TY ALI+
Sbjct: 1017 ALSLFDEMRNRGITPDLYTYNALILNLGIAGMVEEAGKMYEELQLKGLEPNVFTYNALIR 1076



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 70/141 (49%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           +Y  ++H L+++     A++++++M + GI P+  TY+ ++      R  ++   L+  M
Sbjct: 194 SYIGLIHLLLKSGFCREALKVYRRMVSEGIKPSLKTYSALMVALGKRRDIETVMGLLQEM 253

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
              G  P   T+T  I+IL   G  DEA  +L  +   G   DV+ Y  ++   C  G++
Sbjct: 254 ESLGLRPNIYTFTICIRILGRAGKIDEAYGILKRMDDAGCGPDVVTYTVLIDALCNAGKL 313

Query: 631 DVIEFIIEQMHQNKVQPDPST 651
           +  + +  +M  +  +PD  T
Sbjct: 314 NNAKELFLKMKASSHKPDRVT 334



 Score = 55.8 bits (133), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 74/176 (42%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TY+ ++ +L + ++    M + ++M++ G+ PN  T+ I I           A  ++  M
Sbjct: 229 TYSALMVALGKRRDIETVMGLLQEMESLGLRPNIYTFTICIRILGRAGKIDEAYGILKRM 288

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
              G  P  +TYT LI  L + G  + A  L   +       D + Y T+L K  + G +
Sbjct: 289 DDAGCGPDVVTYTVLIDALCNAGKLNNAKELFLKMKASSHKPDRVTYITLLDKFSDHGDL 348

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           D I+    +M  +   PD  T   +       G  + A   L V+  + +   + T
Sbjct: 349 DAIKEFWSEMEADGYLPDVVTFTILIDALCKVGKVDEAFGTLDVMKKQGVAPNLHT 404



 Score = 41.6 bits (96), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 78/190 (41%), Gaps = 3/190 (1%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TY T+   L        A    ++M+  G   N  +Y  +I         + A  +   M
Sbjct: 159 TYLTIFKVLYIRGGLREAPVALEKMRKVGFVLNGYSYIGLIHLLLKSGFCREALKVYRRM 218

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           V +G  P   TY+AL+  L    D +  + LL  +   G+  ++  +   ++     G+I
Sbjct: 219 VSEGIKPSLKTYSALMVALGKRRDIETVMGLLQEMESLGLRPNIYTFTICIRILGRAGKI 278

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEA-LQVLSMRMLCEEVS--TL 687
           D    I+++M      PD  T   +     N G  N+A E  L++ +     + V+  TL
Sbjct: 279 DEAYGILKRMDDAGCGPDVVTYTVLIDALCNAGKLNNAKELFLKMKASSHKPDRVTYITL 338

Query: 688 EEKRSDFEDL 697
            +K SD  DL
Sbjct: 339 LDKFSDHGDL 348


>gi|413938248|gb|AFW72799.1| hypothetical protein ZEAMMB73_717335 [Zea mays]
          Length = 501

 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 122/290 (42%), Gaps = 23/290 (7%)

Query: 398 FSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDS 457
           F++ L A     +  +A  +   + Q+  PD  TY  L              + + +V  
Sbjct: 178 FNSLLDALVKSRRASKAASLVRALEQRFPPDAVTYNTL-------------ADGWCRVKD 224

Query: 458 AKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFC--------DSKTPLGT 509
             R   I   M  + I  +  +   +LK     G ++    +F         D       
Sbjct: 225 TSRALDILRQMVESGIAPTKATYNIILKGFFRSGQLQHAWDFFLQMKRRGSNDENCKPDV 284

Query: 510 PTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSM 569
            +Y TVLH L  A +  +A ++F +M   G  P+ ATYN +I         + A A+   
Sbjct: 285 VSYTTVLHGLGVAGQLDKARKVFDEMSIEGCKPSTATYNALIQVTCKKGNLEDAVAVFDD 344

Query: 570 MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
           MVR G+ P  +TYT LI+ L   G    A+ LLD +  EG   +V  YN +++ + E+G 
Sbjct: 345 MVRKGYIPNVVTYTVLIRGLCHAGKVVRAMKLLDRMKSEGCEPNVQTYNVLIRYSLEEGE 404

Query: 630 IDVIEFIIEQMHQN-KVQPDPSTCHFVFSG-YVNCGFHNSAMEALQVLSM 677
           I+    + E M +  +  P+  T + + S  +V     + A+ A  V+ M
Sbjct: 405 IEKGLDLFETMSKGEECLPNQDTYNIIISAMFVRKRAEDMAVAARMVVEM 454


>gi|12583808|gb|AAG59660.1|AC084319_18 putative membrane-associated salt-inducible protein [Oryza sativa
           Japonica Group]
          Length = 772

 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 90/372 (24%), Positives = 152/372 (40%), Gaps = 20/372 (5%)

Query: 314 QLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVEC 373
           +++ QM   G  P    Y   I  I  +  L    E+L  M    LKP      T+    
Sbjct: 272 EVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGL 331

Query: 374 SKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKP---ERAIKIFAKM-RQKLRPDI 429
             A     AE LL ++ +   P     F    D   +    +R I++  +M      PD+
Sbjct: 332 CSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDV 391

Query: 430 RTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKA--- 486
            TY  +      +N   +EG +   V   K +++      + N     I +K L  A   
Sbjct: 392 ITYTTV------INGFCKEGLIDEAVMLLKSMSSCG---CKPNTVSYTIVLKGLCSAGRW 442

Query: 487 LGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAAT 546
           + AE ++ ++IQ  C    P    T+NT+++ L +     +A+E+ KQM   G  P+  +
Sbjct: 443 VDAEELMSQMIQQGC----PPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLIS 498

Query: 547 YNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVS 606
           Y+ +ID        + A  L+++MV  G  P T+ Y+++   L   G  ++ + + D + 
Sbjct: 499 YSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIK 558

Query: 607 LEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHN 666
              I  D +LYN ++   C++   D        M  N   P+ ST   +  G  + G   
Sbjct: 559 DTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAK 618

Query: 667 SAMEALQVLSMR 678
            A E L  L  R
Sbjct: 619 EAQELLSELCSR 630



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 123/518 (23%), Positives = 196/518 (37%), Gaps = 43/518 (8%)

Query: 55  TQMQIVDALC-RGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMM 113
           T   +V  LC RG  + A  +L  +     +     +  IL    RS      +     M
Sbjct: 113 TFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAM 172

Query: 114 EEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFL-GAC-AKL 171
             K   L+     L++ A+C+ G ++EA  L+  L   +G    +  YN+ L G C AK 
Sbjct: 173 HAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLA-FFGCEADIVSYNAVLKGLCMAKR 231

Query: 172 HSMVHANLCLDLMDSRM---VGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH-YSLSI 227
              V      +LMD  +      N VT+  L+           VHE+     +H  +  I
Sbjct: 232 WGDVE-----ELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDI 286

Query: 228 FSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYI-NRTSEGRLRSSRLDIPIPLNAL 286
                 +    +   L+ A E L  M +  +   +   N   +G   + R      L  L
Sbjct: 287 RMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEEL--L 344

Query: 287 PVMKVLRWSFSDV---IHACGRTQNSGLAE---QLMLQMQSLGLQPSSHTYDGFIRAIVS 340
             M        DV   I      QN GL +   +L+ QM S G  P   TY   I     
Sbjct: 345 SEMFQKDCPLDDVTFNILVDFFCQN-GLVDRVIELLEQMLSHGCMPDVITYTTVINGFCK 403

Query: 341 DRGLRNGMEVLKIMQQNNLKPQD-STIATLSVECSKALELDLAEALLDQISRCTNPKP-- 397
           +  +   + +LK M     KP   S    L   CS    +D  E +   I +   P P  
Sbjct: 404 EGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVT 463

Query: 398 FSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVD 456
           F+  +         E+AI++  +M      PD+ +Y  +    G      E   + + + 
Sbjct: 464 FNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVM- 522

Query: 457 SAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYF---CDSKTPLGTPTYN 513
                  +   ++ N I +S I+      AL  EG + ++IQ F    D+        YN
Sbjct: 523 -------VNKGISPNTIIYSSIAC-----ALSREGRVNKVIQMFDNIKDTTIRSDAVLYN 570

Query: 514 TVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI 551
            V+ SL +  E+ RA++ F  M + G  PN +TY ++I
Sbjct: 571 AVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLI 608



 Score = 58.9 bits (141), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 79/185 (42%), Gaps = 4/185 (2%)

Query: 489 AEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYN 548
           A G++R+L  + C++       +YN VL  L  A+      E+  +M      PN  T+N
Sbjct: 200 AVGLLRKLAFFGCEADIV----SYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFN 255

Query: 549 IMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLE 608
            +I        F+    +++ M   G  P    Y  +I  +   G  + A  +L+ +   
Sbjct: 256 TLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSY 315

Query: 609 GIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSA 668
           G+  +V+ YNT+LK  C   R    E ++ +M Q     D  T + +   +   G  +  
Sbjct: 316 GLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRV 375

Query: 669 MEALQ 673
           +E L+
Sbjct: 376 IELLE 380



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 81/182 (44%), Gaps = 1/182 (0%)

Query: 477 HISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMK 536
           H+ ++   ++ G    +R L        T L T   N VL+++ E      A+ + +++ 
Sbjct: 150 HVILEAACRSGGFRNSVRVLEAMHAKGCT-LDTGNCNLVLNAICEQGCVDEAVGLLRKLA 208

Query: 537 TCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFD 596
             G   +  +YN ++    + + +     L+  MVR    P  +T+  LI  L   G F+
Sbjct: 209 FFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFE 268

Query: 597 EALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVF 656
               +L  +S  G   D+ +Y TI+   C++G ++V   I+ +M    ++P+    + V 
Sbjct: 269 RVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVL 328

Query: 657 SG 658
            G
Sbjct: 329 KG 330



 Score = 46.6 bits (109), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 32/147 (21%), Positives = 64/147 (43%)

Query: 505 TPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSAS 564
            P    T+  V+  L        A+E+  +M   G  P    Y+++++       F+++ 
Sbjct: 107 VPPNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSV 166

Query: 565 ALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKA 624
            ++  M   G    T     ++  + + G  DEA+ LL  ++  G   D++ YN +LK  
Sbjct: 167 RVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGL 226

Query: 625 CEKGRIDVIEFIIEQMHQNKVQPDPST 651
           C   R   +E ++++M +    P+  T
Sbjct: 227 CMAKRWGDVEELMDEMVRVDCAPNIVT 253



 Score = 42.4 bits (98), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 27/142 (19%), Positives = 66/142 (46%), Gaps = 6/142 (4%)

Query: 510 PTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSM 569
           P Y+ +L +   +     ++ + + M   G   +    N++++      C   A  L+  
Sbjct: 147 PMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRK 206

Query: 570 MVRDGFYPQTMTYTALIKILL---DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE 626
           +   G     ++Y A++K L     +GD +E ++  ++V ++  P +++ +NT++   C 
Sbjct: 207 LAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMD--EMVRVDCAP-NIVTFNTLIGYLCR 263

Query: 627 KGRIDVIEFIIEQMHQNKVQPD 648
            G  + +  ++ QM ++   PD
Sbjct: 264 NGLFERVHEVLAQMSEHGCTPD 285


>gi|147778634|emb|CAN76112.1| hypothetical protein VITISV_005527 [Vitis vinifera]
          Length = 1494

 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 74/337 (21%), Positives = 143/337 (42%), Gaps = 27/337 (8%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
            + ++   G+     LA ++  + ++     +   Y+  +             E+L +M+
Sbjct: 223 LATILSVLGKANQEALAVEIFARAEA-AXGNTVQVYNAMMGVYARTGRFTKVQELLDLMR 281

Query: 356 QNNLKPQDSTIATL--SVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMD 409
               +P   +  TL  +   S  +  +LA  LL+++ R +  +P    ++  ++AC    
Sbjct: 282 SRGCEPDLVSFNTLINARLKSGTMVTNLAIELLNEVRR-SGIQPDIITYNTLISACSRES 340

Query: 410 KPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
             E A+K++  M   + +PD+ TY  + S++G      E G +F  ++S           
Sbjct: 341 NLEEAVKVYNDMVAHRCQPDLWTYNAMISVYGRCGMSREAGRLFKDLES----------- 389

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP----TYNTVLHSLVEAQE 524
                    ++  +LL A   EG + + ++  C+    +G      TYNT++H   +  +
Sbjct: 390 --KGFLPDAVTYNSLLYAFAREGNVDK-VKEICEDMVKMGFGKDEMTYNTIIHMYGKRGQ 446

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
              A +++  MK  G  P+A TY ++ID        K A+ ++S M+     P   T++A
Sbjct: 447 HDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSEMLNAXVKPTLRTFSA 506

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTIL 621
           LI      G   EA    D +   GI  D L Y+ +L
Sbjct: 507 LICGYAKAGKRVEAEETFDCMLRSGIKPDHLAYSVML 543



 Score = 67.0 bits (162), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 56/263 (21%), Positives = 113/263 (42%), Gaps = 15/263 (5%)

Query: 412 ERAIKIFA--KMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
           +RA++++    +R    P+ R    + S+ G  N       +F++ ++A           
Sbjct: 201 QRALEVYEWLNLRHWYSPNARMLATILSVLGKANQEALAVEIFARAEAAX---------- 250

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQE--SHR 527
             N    + +M  +    G    ++EL+             ++NT++++ +++    ++ 
Sbjct: 251 -GNTVQVYNAMMGVYARTGRFTKVQELLDLMRSRGCEPDLVSFNTLINARLKSGTMVTNL 309

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A+E+  +++  GI P+  TYN +I  CS     + A  + + MV     P   TY A+I 
Sbjct: 310 AIELLNEVRRSGIQPDIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMIS 369

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
           +    G   EA  L   +  +G   D + YN++L     +G +D ++ I E M +     
Sbjct: 370 VYGRCGMSREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGK 429

Query: 648 DPSTCHFVFSGYVNCGFHNSAME 670
           D  T + +   Y   G H+ A +
Sbjct: 430 DEMTYNTIIHMYGKRGQHDLAFQ 452



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 59/254 (23%), Positives = 101/254 (39%), Gaps = 18/254 (7%)

Query: 427 PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM--DMARNNIQHSHISMKNLL 484
           PD+ ++  L      +NA  + G M + +       AIE+  ++ R+ IQ   I+   L+
Sbjct: 287 PDLVSFNTL------INARLKSGTMVTNL-------AIELLNEVRRSGIQPDIITYNTLI 333

Query: 485 KALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIP 541
            A   E  + E ++ + D       P   TYN ++        S  A  +FK +++ G  
Sbjct: 334 SACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMISVYGRCGMSREAGRLFKDLESKGFL 393

Query: 542 PNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNL 601
           P+A TYN ++   +          +   MV+ GF    MTY  +I +    G  D A  L
Sbjct: 394 PDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIHMYGKRGQHDLAFQL 453

Query: 602 LDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVN 661
              + L G   D + Y  ++    +   I     ++ +M    V+P   T   +  GY  
Sbjct: 454 YSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSEMLNAXVKPTLRTFSALICGYAK 513

Query: 662 CGFHNSAMEALQVL 675
            G    A E    +
Sbjct: 514 AGKRVEAEETFDCM 527



 Score = 64.3 bits (155), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 123/592 (20%), Positives = 231/592 (39%), Gaps = 43/592 (7%)

Query: 115 EKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSM 174
           E   G   + Y  MM    + G   +   L+  +  R G  P L  +N+ + A  K  +M
Sbjct: 247 EAAXGNTVQVYNAMMGVYARTGRFTKVQELLDLMRSR-GCEPDLVSFNTLINARLKSGTM 305

Query: 175 VHANLCLDLMDS-RMVG--KNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHY-SLSIFSL 230
           V  NL ++L++  R  G   + +TY  L+     + NL    +++ D + H     +++ 
Sbjct: 306 V-TNLAIELLNEVRRSGIQPDIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPDLWTY 364

Query: 231 RKFVWSFTRLRDLKSAYETLQHMVALAMM------GKLYINRTSEGRLRSSRLDIPIPLN 284
              +  + R    + A    + + +   +        L      EG +   + +I   + 
Sbjct: 365 NAMISVYGRCGMSREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVK-EICEDMV 423

Query: 285 ALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGL 344
            +   K    +++ +IH  G+     LA QL   M+  G  P + TY   I ++     +
Sbjct: 424 KMGFGKD-EMTYNTIIHMYGKRGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMI 482

Query: 345 RNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSA 400
           +   EV+  M    +KP   T + L    +KA +   AE   D + R +  KP    +S 
Sbjct: 483 KEAAEVMSEMLNAXVKPTLRTFSALICGYAKAGKRVEAEETFDCMLR-SGIKPDHLAYSV 541

Query: 401 FLAACDTMDKPERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAP----------YEEG 449
            L      ++  +A+K++ +M     +PD   YE++  + G  N             E  
Sbjct: 542 MLDILLRFNESGKAMKLYQEMVLHSFKPDHALYEVMLRVLGKENREEDVHKVVKDMEELC 601

Query: 450 NMFSQVDSAKRINAIEMDMARNNI-----QHSHISMKNLLKALGAEGM------IRELIQ 498
            M SQV  +  +     D A N +     Q   +  +NLL  LG+ G        REL+ 
Sbjct: 602 GMNSQVICSILVKGECFDHAANMLRLAISQGCELDRENLLSILGSYGSSGRHLEARELLD 661

Query: 499 YFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAAT-YNIMIDCCSII 557
           +  +  +         ++  L +A +   A+  + + +  G+   + T Y  ++ CC   
Sbjct: 662 FLREHSSGSHQLINEALIIMLCKAHQLGDALREYGKARDFGLFCGSFTMYESLLLCCEEN 721

Query: 558 RCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLY 617
             F  AS + S M   G  P    Y +++      G  + A  L+D    +G+  D +  
Sbjct: 722 ELFAEASQIFSDMRFYGVEPSDHLYRSMVVTYCKMGFPETAHYLIDQAEEKGLLFDDVSI 781

Query: 618 NTILKKACEKGRI-DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSA 668
           +T + +A  K ++    E ++  + Q     D    + +   Y   G +  A
Sbjct: 782 HTGVIEAYGKLKLWQKAESLVGSLRQKCTMVDRKVWNALIHAYAASGCYERA 833



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 87/204 (42%), Gaps = 3/204 (1%)

Query: 459  KRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIREL---IQYFCDSKTPLGTPTYNTV 515
            +R  AI   M R+    +  S+  L++AL  +G + EL   IQ   D    +   +   +
Sbjct: 831  ERARAIFNTMMRDGPSPTVDSVNGLMQALIVDGRLDELYVVIQELQDMGFKISKSSITLM 890

Query: 516  LHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGF 575
            L +   A       +I++ MK  G  P    Y IMI   +  +  +   A+VS M    F
Sbjct: 891  LDAFAHAGNIFEVKKIYQGMKAAGYFPTMHLYRIMIGLLAKGKRVRDVEAMVSEMEVAXF 950

Query: 576  YPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEF 635
             P    + +++K+    GDF +   +  L+   G+  D   YNT++   C   R +    
Sbjct: 951  KPDLSIWNSVLKLYTGIGDFKKTGQVYQLIQEAGLKPDEDTYNTLILMYCRDRRPEEGLS 1010

Query: 636  IIEQMHQNKVQPDPSTCHFVFSGY 659
            ++ +M +  ++P   T   + S +
Sbjct: 1011 LMHEMRRVGLEPKLDTYKSLISAF 1034



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/289 (20%), Positives = 111/289 (38%), Gaps = 23/289 (7%)

Query: 394 NPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFS 453
           N +  +  L+     ++   A++IFA+        ++ Y  +  +       Y     F+
Sbjct: 219 NARMLATILSVLGKANQEALAVEIFARAEAAXGNTVQVYNAMMGV-------YARTGRFT 271

Query: 454 QVDSAKRINAIEMDMARN-NIQHSHISMKNLLKALGAEGMIR-----ELIQYFCDSKTPL 507
           +V          +D+ R+   +   +S   L+ A    G +      EL+     S    
Sbjct: 272 KVQEL-------LDLMRSRGCEPDLVSFNTLINARLKSGTMVTNLAIELLNEVRRSGIQP 324

Query: 508 GTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALV 567
              TYNT++ +         A++++  M      P+  TYN MI         + A  L 
Sbjct: 325 DIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMISVYGRCGMSREAGRLF 384

Query: 568 SMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEK 627
             +   GF P  +TY +L+      G+ D+   + + +   G   D + YNTI+    ++
Sbjct: 385 KDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIHMYGKR 444

Query: 628 GRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
           G+ D+   +   M  +   PD  T   +     + G  N   EA +V+S
Sbjct: 445 GQHDLAFQLYSDMKLSGRSPDAVTYTVLID---SLGKANMIKEAAEVMS 490



 Score = 46.6 bits (109), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 93/471 (19%), Positives = 186/471 (39%), Gaps = 59/471 (12%)

Query: 152  YGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVT-YTELL----KLAVWQ 206
            YG+ P   +Y S +    K+     A+  +D  + + +  ++V+ +T ++    KL +WQ
Sbjct: 737  YGVEPSDHLYRSMVVTYCKMGFPETAHYLIDQAEEKGLLFDDVSIHTGVIEAYGKLKLWQ 796

Query: 207  KNLSAV-----------HEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255
            K  S V            ++W   I  Y+ S    R      T +RD  S   T+  +  
Sbjct: 797  KAESLVGSLRQKCTMVDRKVWNALIHAYAASGCYERARAIFNTMMRDGPSP--TVDSVNG 854

Query: 256  LAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVM--KVLRWSFSDVIHACGRTQNSGLAE 313
            L  M  L ++    GRL     ++ + +  L  M  K+ + S + ++ A     N    +
Sbjct: 855  L--MQALIVD----GRLD----ELYVVIQELQDMGFKISKSSITLMLDAFAHAGNIFEVK 904

Query: 314  QLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDS---TIATLS 370
            ++   M++ G  P+ H Y   I  +   + +R+   ++  M+    KP  S   ++  L 
Sbjct: 905  KIYQGMKAAGYFPTMHLYRIMIGLLAKGKRVRDVEAMVSEMEVAXFKPDLSIWNSVLKLY 964

Query: 371  VECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDI 429
                   +      L+ +     +   ++  +       +PE  + +  +MR+  L P +
Sbjct: 965  TGIGDFKKTGQVYQLIQEAGLKPDEDTYNTLILMYCRDRRPEEGLSLMHEMRRVGLEPKL 1024

Query: 430  RTYELLFSLFGNVNAPYEEGNMFSQVDSA-----KRINAIEMDMARNNIQHSHI-SMKNL 483
             TY+ L S FG +    +   +F  + S      +    I M M RN+  HS    +  +
Sbjct: 1025 DTYKSLISAFGKLQMVEQAEELFEGLLSKECKLDRSFYHIMMKMFRNSGNHSKAEKLLGV 1084

Query: 484  LKALGAEGMIRE----LIQYFCDSKT---------------PLGTPTYNTVLHSLVEAQE 524
            +K  G E  I      ++ Y    +                PL T  Y++V+ + ++  +
Sbjct: 1085 MKEAGVEPTIATMHLLMVSYSGSGQPEEAEKVLDNLKVEGLPLSTLPYSSVIDAYLKNGD 1144

Query: 525  SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGF 575
             + A++   +MK  G+ P+   +   +   S+ +    A  L+  +   GF
Sbjct: 1145 HNVAIQKLMEMKKDGLEPDHRIWTCFVRAASLSQHTSEAIVLLKALRDTGF 1195



 Score = 45.8 bits (107), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 65/380 (17%), Positives = 151/380 (39%), Gaps = 30/380 (7%)

Query: 291  VLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEV 350
            V R  ++ +IHA   +     A  +   M   G  P+  + +G ++A++ D  L     V
Sbjct: 812  VDRKVWNALIHAYAASGCYERARAIFNTMMRDGPSPTVDSVNGLMQALIVDGRLDELYVV 871

Query: 351  LKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDK 410
            ++ +Q    K   S+I  +    + A  +   + +   +           +      + K
Sbjct: 872  IQELQDMGFKISKSSITLMLDAFAHAGNIFEVKKIYQGMKAAGYFPTMHLYRIMIGLLAK 931

Query: 411  PERAIKIFAKMRQ----KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSA------KR 460
             +R   + A + +      +PD+  +  +  L+  +    + G ++  +  A        
Sbjct: 932  GKRVRDVEAMVSEMEVAXFKPDLSIWNSVLKLYTGIGDFKKTGQVYQLIQEAGLKPDEDT 991

Query: 461  INAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLV 520
             N + +   R+      +S+ + ++ +G E  +                 TY +++ +  
Sbjct: 992  YNTLILMYCRDRRPEEGLSLMHEMRRVGLEPKL----------------DTYKSLISAFG 1035

Query: 521  EAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTM 580
            + Q   +A E+F+ + +     + + Y+IM+           A  L+ +M   G  P   
Sbjct: 1036 KLQMVEQAEELFEGLLSKECKLDRSFYHIMMKMFRNSGNHSKAEKLLGVMKEAGVEPTIA 1095

Query: 581  TYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQM 640
            T   L+      G  +EA  +LD + +EG+P   L Y++++    + G  +V    + +M
Sbjct: 1096 TMHLLMVSYSGSGQPEEAEKVLDNLKVEGLPLSTLPYSSVIDAYLKNGDHNVAIQKLMEM 1155

Query: 641  HQNKVQPDPSTCHFVFSGYV 660
             ++ ++PD    H +++ +V
Sbjct: 1156 KKDGLEPD----HRIWTCFV 1171


>gi|115453829|ref|NP_001050515.1| Os03g0569800 [Oryza sativa Japonica Group]
 gi|113548986|dbj|BAF12429.1| Os03g0569800 [Oryza sativa Japonica Group]
          Length = 773

 Score = 86.7 bits (213), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 90/372 (24%), Positives = 152/372 (40%), Gaps = 20/372 (5%)

Query: 314 QLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVEC 373
           +++ QM   G  P    Y   I  I  +  L    E+L  M    LKP      T+    
Sbjct: 272 EVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGL 331

Query: 374 SKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDK---PERAIKIFAKM-RQKLRPDI 429
             A     AE LL ++ +   P     F    D   +    +R I++  +M      PD+
Sbjct: 332 CSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDV 391

Query: 430 RTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKA--- 486
            TY  +      +N   +EG +   V   K +++      + N     I +K L  A   
Sbjct: 392 ITYTTV------INGFCKEGLIDEAVMLLKSMSSCG---CKPNTVSYTIVLKGLCSAGRW 442

Query: 487 LGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAAT 546
           + AE ++ ++IQ  C    P    T+NT+++ L +     +A+E+ KQM   G  P+  +
Sbjct: 443 VDAEELMSQMIQQGC----PPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLIS 498

Query: 547 YNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVS 606
           Y+ +ID        + A  L+++MV  G  P T+ Y+++   L   G  ++ + + D + 
Sbjct: 499 YSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIK 558

Query: 607 LEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHN 666
              I  D +LYN ++   C++   D        M  N   P+ ST   +  G  + G   
Sbjct: 559 DTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAK 618

Query: 667 SAMEALQVLSMR 678
            A E L  L  R
Sbjct: 619 EAQELLSELCSR 630



 Score = 59.3 bits (142), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 79/185 (42%), Gaps = 4/185 (2%)

Query: 489 AEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYN 548
           A G++R+L  + C++       +YN VL  L  A+      E+  +M      PN  T+N
Sbjct: 200 AVGLLRKLAFFGCEADIV----SYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFN 255

Query: 549 IMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLE 608
            +I        F+    +++ M   G  P    Y  +I  +   G  + A  +L+ +   
Sbjct: 256 TLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSY 315

Query: 609 GIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSA 668
           G+  +V+ YNT+LK  C   R    E ++ +M Q     D  T + +   +   G  +  
Sbjct: 316 GLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRV 375

Query: 669 MEALQ 673
           +E L+
Sbjct: 376 IELLE 380



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 81/182 (44%), Gaps = 1/182 (0%)

Query: 477 HISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMK 536
           H+ ++   ++ G    +R L        T L T   N VL+++ E      A+ + +++ 
Sbjct: 150 HVILEAACRSGGFRNSVRVLEAMHAKGCT-LDTGNCNLVLNAICEQGCVDEAVGLLRKLA 208

Query: 537 TCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFD 596
             G   +  +YN ++    + + +     L+  MVR    P  +T+  LI  L   G F+
Sbjct: 209 FFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFE 268

Query: 597 EALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVF 656
               +L  +S  G   D+ +Y TI+   C++G ++V   I+ +M    ++P+    + V 
Sbjct: 269 RVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVL 328

Query: 657 SG 658
            G
Sbjct: 329 KG 330



 Score = 46.6 bits (109), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 32/147 (21%), Positives = 64/147 (43%)

Query: 505 TPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSAS 564
            P    T+  V+  L        A+E+  +M   G  P    Y+++++       F+++ 
Sbjct: 107 VPPNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSV 166

Query: 565 ALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKA 624
            ++  M   G    T     ++  + + G  DEA+ LL  ++  G   D++ YN +LK  
Sbjct: 167 RVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGL 226

Query: 625 CEKGRIDVIEFIIEQMHQNKVQPDPST 651
           C   R   +E ++++M +    P+  T
Sbjct: 227 CMAKRWGDVEELMDEMVRVDCAPNIVT 253



 Score = 42.4 bits (98), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 27/142 (19%), Positives = 66/142 (46%), Gaps = 6/142 (4%)

Query: 510 PTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSM 569
           P Y+ +L +   +     ++ + + M   G   +    N++++      C   A  L+  
Sbjct: 147 PMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRK 206

Query: 570 MVRDGFYPQTMTYTALIKILL---DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE 626
           +   G     ++Y A++K L     +GD +E ++  ++V ++  P +++ +NT++   C 
Sbjct: 207 LAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMD--EMVRVDCAP-NIVTFNTLIGYLCR 263

Query: 627 KGRIDVIEFIIEQMHQNKVQPD 648
            G  + +  ++ QM ++   PD
Sbjct: 264 NGLFERVHEVLAQMSEHGCTPD 285


>gi|218193284|gb|EEC75711.1| hypothetical protein OsI_12542 [Oryza sativa Indica Group]
          Length = 1031

 Score = 86.7 bits (213), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 85/371 (22%), Positives = 160/371 (43%), Gaps = 29/371 (7%)

Query: 305 RTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDS 364
           R +    A+Q++  M + G+ P   TY   I  +     +    E+L  MQ++ + P + 
Sbjct: 401 RPREVSKAKQILKCMLADGIDPDVITYSALINGMCKMGMIHETKEILSRMQKSGVLPNNV 460

Query: 365 TIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAAC--DTMDKPERAIKIFA 419
              TL     KA     A      I R     N    +A L +   + M       K + 
Sbjct: 461 LYTTLVFYFCKAGHAKEALKYFVDIYRSGLVANSVIHNALLCSFYREGMIAEAEQFKQYM 520

Query: 420 KMRQKLRPDIRTYELLFSLFGNVNAPYEEGNM---FSQVDSAKRINAIEMDMARNNIQHS 476
             R K+  D+ ++  +      +++  + GN+   FS  D          +M R+     
Sbjct: 521 S-RMKISFDVASFNCI------IDSYCQRGNVLEAFSVYD----------NMVRHGWPPD 563

Query: 477 HISMKNLLKALGAEGMI---RELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFK 533
             +  +LL+ L   G +   +E + Y  +    +   T NT+L  + +      A+++ +
Sbjct: 564 ICTYGSLLRGLCQGGHLVQAKEFMVYLLEKACAIDEKTLNTLLVGICKHGTLDEALDLCE 623

Query: 534 QMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYG 593
           +M T  I P+  TY I++D          A  L+ MM+  G  P T+ YT L+  L++ G
Sbjct: 624 KMVTRNILPDTYTYTILLDGFCKRGKIVPALILLQMMLEKGLVPDTIAYTCLLNGLVNEG 683

Query: 594 DFDEALNLL-DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTC 652
               A  +  +++  EG+  D + YN+++    + G+I+ IE ++  MH+N+V P  ++ 
Sbjct: 684 QVKAASYMFQEIICKEGLYADCIAYNSMMNGYLKGGQINEIERLMRNMHENEVYPSSASY 743

Query: 653 HFVFSGYVNCG 663
           + +  GY+  G
Sbjct: 744 NILMHGYIKKG 754



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 80/388 (20%), Positives = 159/388 (40%), Gaps = 33/388 (8%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           ++++ +I    + + S  A  L+ +M+ + L P   +Y+  I     +  +   + +   
Sbjct: 300 YTYNIMIDKLCKLKRSARAYLLLKRMREVNLTPDECSYNTLIHGFFGEGKINLAIYIFNQ 359

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPER 413
           M + +LKP  +T   L     +    D A  +L ++ + T  +P          + K ++
Sbjct: 360 MLRQSLKPSVATYTALIDGYCRNGRTDEARRVLYEM-QITGVRP--------REVSKAKQ 410

Query: 414 AIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNI 473
            +K    +   + PD+ TY  L +    +   +E   + S+             M ++ +
Sbjct: 411 ILKCM--LADGIDPDVITYSALINGMCKMGMIHETKEILSR-------------MQKSGV 455

Query: 474 QHSHISMKNLLKALGAEGMIRELIQYFCD-SKTPLGTPTYNTVLHSLVEAQESHRAM--- 529
             +++    L+      G  +E ++YF D  ++ L     N+V+H+ +        M   
Sbjct: 456 LPNNVLYTTLVFYFCKAGHAKEALKYFVDIYRSGL---VANSVIHNALLCSFYREGMIAE 512

Query: 530 -EIFKQ-MKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
            E FKQ M    I  + A++N +ID          A ++   MVR G+ P   TY +L++
Sbjct: 513 AEQFKQYMSRMKISFDVASFNCIIDSYCQRGNVLEAFSVYDNMVRHGWPPDICTYGSLLR 572

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
            L   G   +A   +  +  +    D    NT+L   C+ G +D    + E+M    + P
Sbjct: 573 GLCQGGHLVQAKEFMVYLLEKACAIDEKTLNTLLVGICKHGTLDEALDLCEKMVTRNILP 632

Query: 648 DPSTCHFVFSGYVNCGFHNSAMEALQVL 675
           D  T   +  G+   G    A+  LQ++
Sbjct: 633 DTYTYTILLDGFCKRGKIVPALILLQMM 660



 Score = 59.3 bits (142), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 84/385 (21%), Positives = 156/385 (40%), Gaps = 39/385 (10%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           AE ++ +M++  L P++ TY+  +   V     ++ + +L  M++N ++    T   +  
Sbjct: 249 AESMLQKMKNCRL-PNAVTYNTILNWYVKKGRCKSALRILDDMEKNGIEADLYTYNIMID 307

Query: 372 ECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDKPERAIKIFAKM-RQKLR 426
           +  K      A  LL ++ R  N  P    ++  +       K   AI IF +M RQ L+
Sbjct: 308 KLCKLKRSARAYLLLKRM-REVNLTPDECSYNTLIHGFFGEGKINLAIYIFNQMLRQSLK 366

Query: 427 PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHIS-MKNLLK 485
           P + TY  L      ++     G    + D A+R+     +M    ++   +S  K +LK
Sbjct: 367 PSVATYTAL------IDGYCRNG----RTDEARRV---LYEMQITGVRPREVSKAKQILK 413

Query: 486 ALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAA 545
            + A+G+  ++I             TY+ +++ + +    H   EI  +M+  G+ PN  
Sbjct: 414 CMLADGIDPDVI-------------TYSALINGMCKMGMIHETKEILSRMQKSGVLPNNV 460

Query: 546 TYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLV 605
            Y  ++         K A      + R G    ++ + AL+      G   EA      +
Sbjct: 461 LYTTLVFYFCKAGHAKEALKYFVDIYRSGLVANSVIHNALLCSFYREGMIAEAEQFKQYM 520

Query: 606 SLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFH 665
           S   I  DV  +N I+   C++G +     + + M ++   PD  T   +  G    G  
Sbjct: 521 SRMKISFDVASFNCIIDSYCQRGNVLEAFSVYDNMVRHGWPPDICTYGSLLRGLCQGGHL 580

Query: 666 NSAMEALQVLSMRMLCEEVSTLEEK 690
             A E      M  L E+   ++EK
Sbjct: 581 VQAKEF-----MVYLLEKACAIDEK 600



 Score = 50.4 bits (119), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 66/304 (21%), Positives = 111/304 (36%), Gaps = 51/304 (16%)

Query: 313 EQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVE 372
           E+LM  M    + PSS +Y+  +   +    L   + + + M +  +KP + T       
Sbjct: 725 ERLMRNMHENEVYPSSASYNILMHGYIKKGQLSRTLYLYRDMVKEGIKPDNVTY------ 778

Query: 373 CSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKM---RQKLRPDI 429
             + L   L E  L +I                        A+K   KM      L+P  
Sbjct: 779 --RLLIFGLCEYGLIEI------------------------AVKFLEKMVLEESGLQPKH 812

Query: 430 RTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGA 489
             Y  L      +NA    G+    +D A  +     DM    +  S ++  ++++ L  
Sbjct: 813 THYIAL------INAKCRVGD----IDGAFELKE---DMKALGVVPSEVAESSIVRGLCK 859

Query: 490 EGMIRELIQYFCDSKTPLGTPT---YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAAT 546
            G + E I  F         PT   + T++H L +  +   A  + + M++CG+  +  T
Sbjct: 860 CGKVEEAIIVFSSIMRAGMVPTIATFTTLMHGLCKEFKIDDAFHLKQLMESCGLKVDVVT 919

Query: 547 YNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVS 606
           YN++I      +C   A  L   M   G  P   TY  L   +   G   +   LL  + 
Sbjct: 920 YNVLITGLCNKKCICDALDLYEEMKSKGLLPNITTYITLTGAMYATGTMQDGEKLLKDIE 979

Query: 607 LEGI 610
             GI
Sbjct: 980 DRGI 983



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 47/195 (24%), Positives = 92/195 (47%), Gaps = 15/195 (7%)

Query: 467 DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPL---GTPTYNTVLHSLVEAQ 523
           DM +  I+  +++ + L+  L   G+I   +++    K  L   G    +T   +L+ A+
Sbjct: 765 DMVKEGIKPDNVTYRLLIFGLCEYGLIEIAVKFL--EKMVLEESGLQPKHTHYIALINAK 822

Query: 524 ----ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALV--SMMVRDGFYP 577
               +   A E+ + MK  G+ P+    + ++    + +C K   A++  S ++R G  P
Sbjct: 823 CRVGDIDGAFELKEDMKALGVVPSEVAESSIVR--GLCKCGKVEEAIIVFSSIMRAGMVP 880

Query: 578 QTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI-DVIEFI 636
              T+T L+  L      D+A +L  L+   G+  DV+ YN ++   C K  I D ++ +
Sbjct: 881 TIATFTTLMHGLCKEFKIDDAFHLKQLMESCGLKVDVVTYNVLITGLCNKKCICDALD-L 939

Query: 637 IEQMHQNKVQPDPST 651
            E+M    + P+ +T
Sbjct: 940 YEEMKSKGLLPNITT 954



 Score = 48.9 bits (115), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 73/158 (46%), Gaps = 3/158 (1%)

Query: 513 NTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC-CSIIRCFKSASALVSMMV 571
           N +L++LV   +S       K+      P +  T NI+++  C+  +  K+ S L  M  
Sbjct: 199 NNILNALVGINKSEYVWLFLKESLDRKFPLDVTTCNIVLNSLCTQGKLSKAESMLQKM-- 256

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
           ++   P  +TY  ++   +  G    AL +LD +   GI  D+  YN ++ K C+  R  
Sbjct: 257 KNCRLPNAVTYNTILNWYVKKGRCKSALRILDDMEKNGIEADLYTYNIMIDKLCKLKRSA 316

Query: 632 VIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAM 669
               ++++M +  + PD  + + +  G+   G  N A+
Sbjct: 317 RAYLLLKRMREVNLTPDECSYNTLIHGFFGEGKINLAI 354



 Score = 46.2 bits (108), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 84/408 (20%), Positives = 149/408 (36%), Gaps = 50/408 (12%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           SF+ +I +  +  N   A  +   M   G  P   TY   +R +     L    E +  +
Sbjct: 531 SFNCIIDSYCQRGNVLEAFSVYDNMVRHGWPPDICTYGSLLRGLCQGGHLVQAKEFMVYL 590

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPKPFS--AFLAACDTMDKP 411
            +      + T+ TL V   K   LD A  L ++ ++R   P  ++    L       K 
Sbjct: 591 LEKACAIDEKTLNTLLVGICKHGTLDEALDLCEKMVTRNILPDTYTYTILLDGFCKRGKI 650

Query: 412 ERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
             A+ +   M +K L PD   Y  L +   N         MF ++   + + A   D   
Sbjct: 651 VPALILLQMMLEKGLVPDTIAYTCLLNGLVNEGQVKAASYMFQEIICKEGLYA---DCIA 707

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAME 530
            N      SM N     G    I  L++   +++    + +YN ++H  ++  +  R + 
Sbjct: 708 YN------SMMNGYLKGGQINEIERLMRNMHENEVYPSSASYNILMHGYIKKGQLSRTLY 761

Query: 531 IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV--RDGFYPQTMTYTALIKI 588
           +++ M   GI P+  TY ++I         + A   +  MV    G  P+   Y ALI  
Sbjct: 762 LYRDMVKEGIKPDNVTYRLLIFGLCEYGLIEIAVKFLEKMVLEESGLQPKHTHYIALINA 821

Query: 589 LLDYGDFDEALNLL-DLVSLEGIPHDVL-------------------------------- 615
               GD D A  L  D+ +L  +P +V                                 
Sbjct: 822 KCRVGDIDGAFELKEDMKALGVVPSEVAESSIVRGLCKCGKVEEAIIVFSSIMRAGMVPT 881

Query: 616 --LYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVN 661
              + T++   C++ +ID    + + M    ++ D  T + + +G  N
Sbjct: 882 IATFTTLMHGLCKEFKIDDAFHLKQLMESCGLKVDVVTYNVLITGLCN 929


>gi|298711207|emb|CBJ32428.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 870

 Score = 86.7 bits (213), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 86/410 (20%), Positives = 175/410 (42%), Gaps = 31/410 (7%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ ++  CG         +LM  M+  G+ P+ + Y+    A+      R   E+ + M
Sbjct: 147 TYNVLLRLCGLGGCWATGLELMGMMEDEGITPNPYHYNSMFMALERGERWREAAELFRKM 206

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT---NPKPFSAFLAACDTMDKP 411
           +    +P   T A L     +  + D+A A+L ++ R +   + + ++  L AC    K 
Sbjct: 207 RACGTRPNALTYAPLIGVMDRCNKQDMAGAVLKEMLRESPRDSTREYNLLLNACAKARKW 266

Query: 412 ERAIKIFAKMRQK--LRPDIRTYELLFSLFG----------NVNAPYEEGN--------- 450
           E A  +F  M++K  ++PD  TY  + +  G          +++A  E+G          
Sbjct: 267 EHAQLVFEDMKKKAGVKPDNVTYNTVINALGRCGRVKEATVHLHAMKEQGLSPDVVTFGT 326

Query: 451 -MFSQVDSAKRINAIEM--DMARNNIQHSHISMKNLLKALGAEGMIRELIQYF---CDSK 504
            + +   SAKR  A+ +  ++    ++ +  + K  + +    G  ++ +  F      K
Sbjct: 327 LIHACAQSAKREPALALFAELVSRGLKPNLEAYKGCIVSCHKTGHYQQGLDLFNRMLADK 386

Query: 505 TPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSAS 564
             +    +NT +    + +   R + +  +M+   + P+  +YN  I  C   +  +  +
Sbjct: 387 VRMDRVVFNTAIACCAQLKLWRRGVAMLDEMRERKVAPDQYSYNSAIYGCVKAQQSQQMT 446

Query: 565 ALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEG-IPHDVLLYNTILKK 623
            +++ M  DGF P   TY+ LI+ L D   +  A+ +LD + LEG +  D   +N  ++ 
Sbjct: 447 MVLARMREDGFDPDVWTYSNLIRCLADSMLWRRAVGILDDMLLEGRVQPDAHCFNAAVRA 506

Query: 624 ACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
             + G     E ++  M    + PD  T + +   Y N G    A+  L+
Sbjct: 507 CSKVGEWAEAERLVTGMRGQGLAPDKYTYNSLIYAYGNSGEWEKALSMLE 556



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 103/503 (20%), Positives = 204/503 (40%), Gaps = 60/503 (11%)

Query: 93  ILNYCARSPDPLFVMETWRMMEEKE-IGLNNKCYLLMMQALCKGGYLEEASNLIYFLGER 151
           +LN CA++         +  M++K  +  +N  Y  ++ AL + G ++EA+  ++ + E+
Sbjct: 256 LLNACAKARKWEHAQLVFEDMKKKAGVKPDNVTYNTVINALGRCGRVKEATVHLHAMKEQ 315

Query: 152 YGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELL----KLAVWQK 207
            G+ P +  + + + ACA+      A      + SR +  N   Y   +    K   +Q+
Sbjct: 316 -GLSPDVVTFGTLIHACAQSAKREPALALFAELVSRGLKPNLEAYKGCIVSCHKTGHYQQ 374

Query: 208 NLSAVHEIWEDYIKHYSLSIFS-----------LRKFVWSFTRLRDLKSAYETLQHMVAL 256
            L   + +  D ++   + +F+            R+ V     +R+ K A +  Q+    
Sbjct: 375 GLDLFNRMLADKVRMDRV-VFNTAIACCAQLKLWRRGVAMLDEMRERKVAPD--QYSYNS 431

Query: 257 AMMGKLYINRTSE-----GRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRT----Q 307
           A+ G +   ++ +      R+R    D  +            W++S++I     +    +
Sbjct: 432 AIYGCVKAQQSQQMTMVLARMREDGFDPDV------------WTYSNLIRCLADSMLWRR 479

Query: 308 NSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIA 367
             G+ + ++L+ +   +QP +H ++  +RA            ++  M+   L P   T  
Sbjct: 480 AVGILDDMLLEGR---VQPDAHCFNAAVRACSKVGEWAEAERLVTGMRGQGLAPDKYTYN 536

Query: 368 TLSVECSKALELDLAEALLDQISRC---TNPKPFSAFLAACDTMDKPERAIKIFAKM--R 422
           +L      + E + A ++L++I       N   +SA + ACD   + ERA+++  +M  R
Sbjct: 537 SLIYAYGNSGEWEKALSMLEEIRAAGFKVNCMAYSAAIKACDKAFQWERALELLDRMVER 596

Query: 423 QKLRPDIRTYELLFSLFGNVNAPYE-------EGNMFSQVDSAKRINAIEMDMARNNIQH 475
             ++P++  Y    S     + PY        EG     V          + +    I  
Sbjct: 597 GGVKPNLFAYNHAMSACVRFSPPYSRRKELHGEGGGQGAVSPTSFCVPANLPVFEAGIPG 656

Query: 476 SHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPT----YNTVLHSLVEAQESHRAMEI 531
              S   LL+ALG  G   E ++ F D K     P     Y T+L     A  + +A+E 
Sbjct: 657 DWYSNHALLEALGRGGRWEEAVKTFEDKKRQADRPPEQTCYKTMLRVCERAGFACQAVEY 716

Query: 532 FKQMKTCGIPPNAATYNIMIDCC 554
            K+M   G+PP  + +   +  C
Sbjct: 717 LKEMPAAGVPPTLSHFKQALKAC 739



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 80/361 (22%), Positives = 163/361 (45%), Gaps = 25/361 (6%)

Query: 299 VIHACGRTQNSGLAEQLMLQMQS-LGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQN 357
           +++AC + +    A+ +   M+   G++P + TY+  I A+     ++     L  M++ 
Sbjct: 256 LLNACAKARKWEHAQLVFEDMKKKAGVKPDNVTYNTVINALGRCGRVKEATVHLHAMKEQ 315

Query: 358 NLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNP--KPFSAFLAACDTMDKPERA 414
            L P   T  TL   C+++ + + A AL  + +SR   P  + +   + +C      ++ 
Sbjct: 316 GLSPDVVTFGTLIHACAQSAKREPALALFAELVSRGLKPNLEAYKGCIVSCHKTGHYQQG 375

Query: 415 IKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNI- 473
           + +F +M   L   +R   ++F+      A         Q+   +R  A+  +M    + 
Sbjct: 376 LDLFNRM---LADKVRMDRVVFNTAIACCA---------QLKLWRRGVAMLDEMRERKVA 423

Query: 474 --QHSHIS-MKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAME 530
             Q+S+ S +   +KA  ++ M   L +   D   P    TY+ ++  L ++    RA+ 
Sbjct: 424 PDQYSYNSAIYGCVKAQQSQQMTMVLARMREDGFDP-DVWTYSNLIRCLADSMLWRRAVG 482

Query: 531 IFKQMKTCG-IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
           I   M   G + P+A  +N  +  CS +  +  A  LV+ M   G  P   TY +LI   
Sbjct: 483 ILDDMLLEGRVQPDAHCFNAAVRACSKVGEWAEAERLVTGMRGQGLAPDKYTYNSLIYAY 542

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG--RIDVIEFIIEQMHQNKVQP 647
            + G++++AL++L+ +   G   + + Y+  + KAC+K       +E +   + +  V+P
Sbjct: 543 GNSGEWEKALSMLEEIRAAGFKVNCMAYSAAI-KACDKAFQWERALELLDRMVERGGVKP 601

Query: 648 D 648
           +
Sbjct: 602 N 602



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 75/352 (21%), Positives = 132/352 (37%), Gaps = 50/352 (14%)

Query: 315 LMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECS 374
           L+  M+S GL P++ TY+  +R          G+E++ +M+   + P             
Sbjct: 132 LVQMMRSEGLAPTAITYNVLLRLCGLGGCWATGLELMGMMEDEGITP------------- 178

Query: 375 KALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYE 433
                              NP  +++   A +  ++   A ++F KMR    RP+  TY 
Sbjct: 179 -------------------NPYHYNSMFMALERGERWREAAELFRKMRACGTRPNALTYA 219

Query: 434 LLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMI 493
            L  +    N          + D A    A+  +M R + + S      LL A       
Sbjct: 220 PLIGVMDRCN----------KQDMA---GAVLKEMLRESPRDSTREYNLLLNACAKARKW 266

Query: 494 RELIQYFCDSKTPLGTP----TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNI 549
                 F D K   G      TYNTV+++L        A      MK  G+ P+  T+  
Sbjct: 267 EHAQLVFEDMKKKAGVKPDNVTYNTVINALGRCGRVKEATVHLHAMKEQGLSPDVVTFGT 326

Query: 550 MIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEG 609
           +I  C+     + A AL + +V  G  P    Y   I      G + + L+L + +  + 
Sbjct: 327 LIHACAQSAKREPALALFAELVSRGLKPNLEAYKGCIVSCHKTGHYQQGLDLFNRMLADK 386

Query: 610 IPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVN 661
           +  D +++NT +    +         ++++M + KV PD  + +    G V 
Sbjct: 387 VRMDRVVFNTAIACCAQLKLWRRGVAMLDEMRERKVAPDQYSYNSAIYGCVK 438



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 72/334 (21%), Positives = 131/334 (39%), Gaps = 24/334 (7%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ VI+A GR      A   +  M+  GL P   T+   I A          + +   +
Sbjct: 288 TYNTVINALGRCGRVKEATVHLHAMKEQGLSPDVVTFGTLIHACAQSAKREPALALFAEL 347

Query: 355 QQNNLKPQDSTIATLSVECSKALE----LDLAEALLDQISRCTNPKPFSAFLAACDTMDK 410
               LKP         V C K       LDL   +L    R  +   F+  +A C  +  
Sbjct: 348 VSRGLKPNLEAYKGCIVSCHKTGHYQQGLDLFNRMLADKVR-MDRVVFNTAIACCAQLKL 406

Query: 411 PERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
             R + +  +MR+ K+ PD  +Y    +++G V A  ++    + V +  R +  + D+ 
Sbjct: 407 WRRGVAMLDEMRERKVAPDQYSYN--SAIYGCVKA--QQSQQMTMVLARMREDGFDPDV- 461

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCD----SKTPLGTPTYNTVLHSLVEAQES 525
                    +  NL++ L    + R  +    D     +       +N  + +  +  E 
Sbjct: 462 --------WTYSNLIRCLADSMLWRRAVGILDDMLLEGRVQPDAHCFNAAVRACSKVGEW 513

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
             A  +   M+  G+ P+  TYN +I        ++ A +++  +   GF    M Y+A 
Sbjct: 514 AEAERLVTGMRGQGLAPDKYTYNSLIYAYGNSGEWEKALSMLEEIRAAGFKVNCMAYSAA 573

Query: 586 IKILLDYGDFDEALNLLD-LVSLEGIPHDVLLYN 618
           IK       ++ AL LLD +V   G+  ++  YN
Sbjct: 574 IKACDKAFQWERALELLDRMVERGGVKPNLFAYN 607



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 48/214 (22%), Positives = 79/214 (36%), Gaps = 36/214 (16%)

Query: 510 PTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSM 569
           P  + +    V A    RA+ + + M++ G+ P A TYN+++  C +  C+ +   L+ M
Sbjct: 111 PLLDEMRDRGVAADVVKRALGLVQMMRSEGLAPTAITYNVLLRLCGLGGCWATGLELMGM 170

Query: 570 MVRDGFYPQTMTYTALIKILLDYGDFDEAL-------------NLLDLVSLEGI------ 610
           M  +G  P    Y ++   L     + EA              N L    L G+      
Sbjct: 171 MEDEGITPNPYHYNSMFMALERGERWREAAELFRKMRACGTRPNALTYAPLIGVMDRCNK 230

Query: 611 ---------------PHDVLLYNTILKKACEKGR-IDVIEFIIEQMHQNK-VQPDPSTCH 653
                          P D      +L  AC K R  +  + + E M +   V+PD  T +
Sbjct: 231 QDMAGAVLKEMLRESPRDSTREYNLLLNACAKARKWEHAQLVFEDMKKKAGVKPDNVTYN 290

Query: 654 FVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTL 687
            V +    CG    A   L  +  + L  +V T 
Sbjct: 291 TVINALGRCGRVKEATVHLHAMKEQGLSPDVVTF 324


>gi|145336953|ref|NP_176455.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806497|sp|Q3ECK2.2|PPR92_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62680, mitochondrial; Flags: Precursor
 gi|332195872|gb|AEE33993.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 548

 Score = 86.7 bits (213), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 94/433 (21%), Positives = 176/433 (40%), Gaps = 27/433 (6%)

Query: 266 RTSEGRLRSSRLDIPIPL-----NALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQ 320
           R S+ RLR  +L+  I L      + P   ++   F+ ++ A  + +   +   L  +M+
Sbjct: 55  RLSKTRLRDIKLNDAIDLFSDMVKSRPFPSIV--DFNRLLSAIVKLKKYDVVISLGKKME 112

Query: 321 SLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELD 380
            LG++   +T++  I        +   + +L  M +   +P   TI +L     +   + 
Sbjct: 113 VLGIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVS 172

Query: 381 LAEALLDQISRCTNPKPFSAFLAACDTMDKPER---AIKIFAKM-RQKLRPDIRTYELLF 436
            A +L+D++          A+ A  D++ K +R   A   F ++ R+ +RP++ TY  L 
Sbjct: 173 DAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALV 232

Query: 437 SLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMI--- 493
           +   N +   +   + S             DM +  I  + I+   LL A    G +   
Sbjct: 233 NGLCNSSRWSDAARLLS-------------DMIKKKITPNVITYSALLDAFVKNGKVLEA 279

Query: 494 RELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC 553
           +EL +            TY+++++ L        A ++F  M + G   +  +YN +I+ 
Sbjct: 280 KELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLING 339

Query: 554 CSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHD 613
               +  +    L   M + G    T+TY  LI+     GD D+A      +   GI  D
Sbjct: 340 FCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPD 399

Query: 614 VLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           +  YN +L   C+ G ++    I E M + ++  D  T   V  G    G    A     
Sbjct: 400 IWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFC 459

Query: 674 VLSMRMLCEEVST 686
            LS++ L  ++ T
Sbjct: 460 SLSLKGLKPDIVT 472


>gi|297830178|ref|XP_002882971.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328811|gb|EFH59230.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 642

 Score = 86.7 bits (213), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 87/424 (20%), Positives = 166/424 (39%), Gaps = 57/424 (13%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM- 354
            S+++ A GR +    A  +  Q +    +P+S TY+  I  ++ +       EV   M 
Sbjct: 165 LSELVKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMC 224

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQIS-RCTNP--KPFSAFLAACDTMDKP 411
            + +  P   T + L     K    D A  L D++   C  P  K ++  L     + K 
Sbjct: 225 NEGDCFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKV 284

Query: 412 ERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           E+A+ +F +M R    P + TY  L    G      E  +++              +M  
Sbjct: 285 EKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVEEAYDLYK-------------NMLT 331

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPT---YNTVLHSLVEAQES-- 525
           + +    + + NL+  LG  G + EL   F +  T   TPT   YNTV+ +L E++    
Sbjct: 332 DGLTPDVVFLNNLMNILGKVGRLEELTNVFNEMGTWRCTPTVVSYNTVIKALFESKAPVS 391

Query: 526 ----------------------------------HRAMEIFKQMKTCGIPPNAATYNIMI 551
                                              +A+ + ++M   G PP  A Y  +I
Sbjct: 392 EVSSWFDKMKADGVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLI 451

Query: 552 DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIP 611
           +     + +++A+ L   +  +     +  Y  +IK     G   EA++L + +  +G  
Sbjct: 452 NALGKAKRYEAANELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSG 511

Query: 612 HDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEA 671
            DV  YN ++    + G ++    ++ +M +N    D ++ + + +G+   G    A+E 
Sbjct: 512 PDVYAYNALMSGMVKAGMVNEANSLLRKMEENGCTADINSHNIILNGFARTGVPRRAIEM 571

Query: 672 LQVL 675
            + +
Sbjct: 572 FETM 575



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/277 (20%), Positives = 124/277 (44%), Gaps = 21/277 (7%)

Query: 318 QMQSLGLQPSSHTYDGFIRAIVSDRG-LRNGMEVLKIMQQNNLKPQDSTIATLSVECSKA 376
           +M +    P+  +Y+  I+A+   +  +         M+ + + P + T + L     K 
Sbjct: 363 EMGTWRCTPTVVSYNTVIKALFESKAPVSEVSSWFDKMKADGVSPSEFTYSILIDGYCKT 422

Query: 377 LELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPER---AIKIFAKMRQKL-RPDIRTY 432
             ++ A  LL+++     P   +A+ +  + + K +R   A ++F ++++       R Y
Sbjct: 423 NRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKELKENFGNVSSRVY 482

Query: 433 ELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGM 492
            ++   FG      E  ++F         N ++   +  ++   +  M  ++KA    GM
Sbjct: 483 AVMIKHFGKCGKLSEAVDLF---------NEMKNQGSGPDVYAYNALMSGMVKA----GM 529

Query: 493 IRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNI 549
           + E   L++   ++       ++N +L+         RA+E+F+ MK CGI P+  TYN 
Sbjct: 530 VNEANSLLRKMEENGCTADINSHNIILNGFARTGVPRRAIEMFETMKHCGIKPDGVTYNT 589

Query: 550 MIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
           ++ C +    F+ A+ L+  M   GF    +TY++++
Sbjct: 590 LLGCFAHAGMFEEAARLMREMKDKGFEYDAITYSSIL 626



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 84/187 (44%), Gaps = 5/187 (2%)

Query: 467 DMARNN-IQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEA 522
           ++ RN  +    + +  L+KALG   M+ + +  F  +K     P   TYN+V+  L++ 
Sbjct: 151 EVVRNTYVSVGPVVLSELVKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQE 210

Query: 523 QESHRAMEIFKQMKTCG-IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMT 581
            +  +  E++ +M   G   P+  TY+ +I     +    SA  L   M  +   P    
Sbjct: 211 GQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKI 270

Query: 582 YTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMH 641
           YT L+ I    G  ++AL+L + +   G    V  Y  ++K   + GR++    + + M 
Sbjct: 271 YTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVEEAYDLYKNML 330

Query: 642 QNKVQPD 648
            + + PD
Sbjct: 331 TDGLTPD 337



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 68/340 (20%), Positives = 132/340 (38%), Gaps = 30/340 (8%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A  L  +M+  G  P+ +TY   I+ +     +    ++ K M  + L P    +  L  
Sbjct: 287 ALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVEEAYDLYKNMLTDGLTPDVVFLNNLMN 346

Query: 372 ECSKALELDLAEALLDQIS--RCT-NPKPFSAFLAACDTMDKPERAIK-IFAKMR-QKLR 426
              K   L+    + +++   RCT     ++  + A      P   +   F KM+   + 
Sbjct: 347 ILGKVGRLEELTNVFNEMGTWRCTPTVVSYNTVIKALFESKAPVSEVSSWFDKMKADGVS 406

Query: 427 PDIRTYELLFSLFGNVN-------------------APYEEGNMFSQVDSAKRI---NAI 464
           P   TY +L   +   N                    P    ++ + +  AKR    N +
Sbjct: 407 PSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANEL 466

Query: 465 EMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVE 521
             ++  N    S      ++K  G  G + E +  F + K     P    YN ++  +V+
Sbjct: 467 FKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVK 526

Query: 522 AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMT 581
           A   + A  + ++M+  G   +  ++NI+++  +     + A  +   M   G  P  +T
Sbjct: 527 AGMVNEANSLLRKMEENGCTADINSHNIILNGFARTGVPRRAIEMFETMKHCGIKPDGVT 586

Query: 582 YTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTIL 621
           Y  L+      G F+EA  L+  +  +G  +D + Y++IL
Sbjct: 587 YNTLLGCFAHAGMFEEAARLMREMKDKGFEYDAITYSSIL 626


>gi|357122161|ref|XP_003562784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Brachypodium distachyon]
          Length = 791

 Score = 86.7 bits (213), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 73/330 (22%), Positives = 143/330 (43%), Gaps = 45/330 (13%)

Query: 395 PKP----FSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEG 449
           P P    ++A ++A     +   A+ +F +M    + P + TY ++  ++  +  P++E 
Sbjct: 172 PDPDASAYTALISALSRASRFRDAVAVFRRMVANGVCPALVTYNVVLHVYSKIAVPWKE- 230

Query: 450 NMFSQVDSAKRINAIEMD--------------------------MARNNIQHSHISMKNL 483
            + + VDS ++ + I +D                          M     +   +++ +L
Sbjct: 231 -VLALVDSMRK-DGIPLDRYTYNTLISCCRRRALYKEAAKVFDEMRAAGFEPDKVTLNSL 288

Query: 484 LKALG-------AEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMK 536
           L   G       A G+++E+ Q  C    P    TYN+++ S V+      A ++ ++M+
Sbjct: 289 LDVYGKARRYDEAIGVLKEMEQGGC----PPSVVTYNSLISSYVKDGLLEEATQLKEEME 344

Query: 537 TCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFD 596
             GI P+  TY  ++          +A    + M+R+G  P   TY ALIK+    G F 
Sbjct: 345 VKGIEPDVITYTTLVSGLDRAGKIDAAIGTYNEMLRNGCKPNLCTYNALIKLHGVRGKFP 404

Query: 597 EALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVF 656
           E + + D +   G   DV+ +NT+L    + G    +  + ++M ++   P+  T   + 
Sbjct: 405 EMMIVFDEIRSAGFVPDVVTWNTLLAVFGQNGLDTEVSGVFKEMKKSGYVPERDTYVSLI 464

Query: 657 SGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           S Y  CG  + AME  + +    +  ++ST
Sbjct: 465 SSYSRCGLFDQAMEIYKRMIEAGIHPDIST 494



 Score = 80.5 bits (197), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 89/351 (25%), Positives = 152/351 (43%), Gaps = 34/351 (9%)

Query: 318 QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGME-VLKIMQQNNLKPQDSTIATLSVECSKA 376
           +++S G  P   T++  + A+    GL   +  V K M+++   P+  T  +L    S+ 
Sbjct: 412 EIRSAGFVPDVVTWNTLL-AVFGQNGLDTEVSGVFKEMKKSGYVPERDTYVSLISSYSRC 470

Query: 377 LELDLA-EALLDQISRCTNP--KPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTY 432
              D A E     I    +P    ++A L+A     + E+A K+FA+M     RPD  +Y
Sbjct: 471 GLFDQAMEIYKRMIEAGIHPDISTYNAVLSALARGGRWEQAEKLFAEMENLDSRPDELSY 530

Query: 433 ELLFSLFGNVNAPYEEGNMFSQVDSAKRINA--------IEMDMARNNIQHSHISM---- 480
             L   + N     ++    S+   A+RI +        + ++   NN+  +  +     
Sbjct: 531 SSLLHAYANAKK-LDKMKSLSEDIYAERIESHNGLVKTLVLVNSKVNNLSDTEKAFLELR 589

Query: 481 -------KNLLKAL----GAEGMIR---ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESH 526
                   N+L A+    G  GM++   E++    +S   L T TYN+++H      +  
Sbjct: 590 RRRCSLDINVLNAMISIYGKNGMVKKVEEILSLMKESSINLSTATYNSLMHMYSRLGDCE 649

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
           +   I  ++K+    P+  +YN MI         K AS L S M   G  P  +TY   +
Sbjct: 650 KCENILTEIKSSRARPDRYSYNTMIYAYGRKGQMKEASRLFSEMKCSGLVPDIVTYNIFV 709

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI-DVIEFI 636
           K  +    F+EA++L+  +   G   +   YNTIL++ C  GRI D   FI
Sbjct: 710 KSYVANSMFEEAIDLVRYMVTHGCKPNERTYNTILQEYCSHGRIADGKSFI 760



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 75/337 (22%), Positives = 143/337 (42%), Gaps = 21/337 (6%)

Query: 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
           R++++ +I  C R      A ++  +M++ G +P   T +  +      R     + VLK
Sbjct: 247 RYTYNTLISCCRRRALYKEAAKVFDEMRAAGFEPDKVTLNSLLDVYGKARRYDEAIGVLK 306

Query: 353 IMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQIS-RCTNPK--PFSAFLAACDTMD 409
            M+Q    P   T  +L     K   L+ A  L +++  +   P    ++  ++  D   
Sbjct: 307 EMEQGGCPPSVVTYNSLISSYVKDGLLEEATQLKEEMEVKGIEPDVITYTTLVSGLDRAG 366

Query: 410 KPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
           K + AI  + +M R   +P++ TY  L  L G      E   +F ++ SA  +  +    
Sbjct: 367 KIDAAIGTYNEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMIVFDEIRSAGFVPDV---- 422

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQES 525
                    ++   LL   G  G+  E+   F + K     P   TY +++ S       
Sbjct: 423 ---------VTWNTLLAVFGQNGLDTEVSGVFKEMKKSGYVPERDTYVSLISSYSRCGLF 473

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
            +AMEI+K+M   GI P+ +TYN ++   +    ++ A  L + M      P  ++Y++L
Sbjct: 474 DQAMEIYKRMIEAGIHPDISTYNAVLSALARGGRWEQAEKLFAEMENLDSRPDELSYSSL 533

Query: 586 IKILLDYGDFDEALNLLDLVSLEGI-PHDVLLYNTIL 621
           +    +    D+  +L + +  E I  H+ L+   +L
Sbjct: 534 LHAYANAKKLDKMKSLSEDIYAERIESHNGLVKTLVL 570



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 76/391 (19%), Positives = 144/391 (36%), Gaps = 34/391 (8%)

Query: 326 PSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTI-ATLSVECSKALELDLAEA 384
           P +  Y   I A+      R+ + V + M  N + P   T    L V    A+      A
Sbjct: 174 PDASAYTALISALSRASRFRDAVAVFRRMVANGVCPALVTYNVVLHVYSKIAVPWKEVLA 233

Query: 385 LLDQISRCTNP---KPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFG 440
           L+D + +   P     ++  ++ C      + A K+F +MR     PD  T   L  ++G
Sbjct: 234 LVDSMRKDGIPLDRYTYNTLISCCRRRALYKEAAKVFDEMRAAGFEPDKVTLNSLLDVYG 293

Query: 441 NVNAPYEEGNMFSQVDSA----------------------KRINAIEMDMARNNIQHSHI 478
                 E   +  +++                        +    ++ +M    I+   I
Sbjct: 294 KARRYDEAIGVLKEMEQGGCPPSVVTYNSLISSYVKDGLLEEATQLKEEMEVKGIEPDVI 353

Query: 479 SMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQM 535
           +   L+  L   G I   I  + +       P   TYN ++       +    M +F ++
Sbjct: 354 TYTTLVSGLDRAGKIDAAIGTYNEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMIVFDEI 413

Query: 536 KTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDF 595
           ++ G  P+  T+N ++            S +   M + G+ P+  TY +LI      G F
Sbjct: 414 RSAGFVPDVVTWNTLLAVFGQNGLDTEVSGVFKEMKKSGYVPERDTYVSLISSYSRCGLF 473

Query: 596 DEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFV 655
           D+A+ +   +   GI  D+  YN +L      GR +  E +  +M     +PD  +   +
Sbjct: 474 DQAMEIYKRMIEAGIHPDISTYNAVLSALARGGRWEQAEKLFAEMENLDSRPDELSYSSL 533

Query: 656 FSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
              Y N       ++ ++ LS  +  E + +
Sbjct: 534 LHAYANA----KKLDKMKSLSEDIYAERIES 560



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 86/450 (19%), Positives = 171/450 (38%), Gaps = 70/450 (15%)

Query: 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
           + + + ++   G+ +    A  ++ +M+  G  PS  TY+  I + V D  L    ++ +
Sbjct: 282 KVTLNSLLDVYGKARRYDEAIGVLKEMEQGGCPPSVVTYNSLISSYVKDGLLEEATQLKE 341

Query: 353 IMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTM 408
            M+   ++P   T  TL     +A ++D A    +++ R    KP    ++A +      
Sbjct: 342 EMEVKGIEPDVITYTTLVSGLDRAGKIDAAIGTYNEMLR-NGCKPNLCTYNALIKLHGVR 400

Query: 409 DKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQ------------- 454
            K    + +F ++R     PD+ T+  L ++FG      E   +F +             
Sbjct: 401 GKFPEMMIVFDEIRSAGFVPDVVTWNTLLAVFGQNGLDTEVSGVFKEMKKSGYVPERDTY 460

Query: 455 ---VDSAKRINAIE--MDMARNNIQ---HSHISMKN-LLKALGAEGMIRELIQYFCDSKT 505
              + S  R    +  M++ +  I+   H  IS  N +L AL   G   +  + F + + 
Sbjct: 461 VSLISSYSRCGLFDQAMEIYKRMIEAGIHPDISTYNAVLSALARGGRWEQAEKLFAEMEN 520

Query: 506 PLGTP---TYNTVLHSLVEAQ-----------------ESHRAM---------------- 529
               P   +Y+++LH+   A+                 ESH  +                
Sbjct: 521 LDSRPDELSYSSLLHAYANAKKLDKMKSLSEDIYAERIESHNGLVKTLVLVNSKVNNLSD 580

Query: 530 --EIFKQMKT--CGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
             + F +++   C +  N    N MI         K    ++S+M        T TY +L
Sbjct: 581 TEKAFLELRRRRCSLDIN--VLNAMISIYGKNGMVKKVEEILSLMKESSINLSTATYNSL 638

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           + +    GD ++  N+L  +       D   YNT++     KG++     +  +M  + +
Sbjct: 639 MHMYSRLGDCEKCENILTEIKSSRARPDRYSYNTMIYAYGRKGQMKEASRLFSEMKCSGL 698

Query: 646 QPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
            PD  T +     YV       A++ ++ +
Sbjct: 699 VPDIVTYNIFVKSYVANSMFEEAIDLVRYM 728



 Score = 43.9 bits (102), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 68/291 (23%), Positives = 120/291 (41%), Gaps = 41/291 (14%)

Query: 107 METWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLG 166
           ME ++ M E  I  +   Y  ++ AL +GG  E+A  L   + E     P    Y+S L 
Sbjct: 477 MEIYKRMIEAGIHPDISTYNAVLSALARGGRWEQAEKLFAEM-ENLDSRPDELSYSSLLH 535

Query: 167 ACA---KLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDY---- 219
           A A   KL  M   +L  D+   R+   N +  T L+ +     NLS   + + +     
Sbjct: 536 AYANAKKLDKM--KSLSEDIYAERIESHNGLVKT-LVLVNSKVNNLSDTEKAFLELRRRR 592

Query: 220 ------IKHYSLSIFSLRKFVWSFTRLRDL---------KSAYETLQHMVALAMMGKLYI 264
                 + +  +SI+     V     +  L          + Y +L HM +     +   
Sbjct: 593 CSLDINVLNAMISIYGKNGMVKKVEEILSLMKESSINLSTATYNSLMHMYSRLGDCEKCE 652

Query: 265 NRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGL 324
           N  +E +   +R D              R+S++ +I+A GR      A +L  +M+  GL
Sbjct: 653 NILTEIKSSRARPD--------------RYSYNTMIYAYGRKGQMKEASRLFSEMKCSGL 698

Query: 325 QPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVE-CS 374
            P   TY+ F+++ V++      +++++ M  +  KP + T  T+  E CS
Sbjct: 699 VPDIVTYNIFVKSYVANSMFEEAIDLVRYMVTHGCKPNERTYNTILQEYCS 749


>gi|110741592|dbj|BAE98744.1| PPR-repeat protein [Arabidopsis thaliana]
          Length = 548

 Score = 86.7 bits (213), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 94/433 (21%), Positives = 176/433 (40%), Gaps = 27/433 (6%)

Query: 266 RTSEGRLRSSRLDIPIPL-----NALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQ 320
           R S+ RLR  +L+  I L      + P   ++   F+ ++ A  + +   +   L  +M+
Sbjct: 55  RLSKTRLRDIKLNDAIDLFSDMVKSRPFPSIV--DFNRLLSAIVKLKKYDVVISLGKKME 112

Query: 321 SLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELD 380
            LG++   +T++  I        +   + +L  M +   +P   TI +L     +   + 
Sbjct: 113 VLGIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVS 172

Query: 381 LAEALLDQISRCTNPKPFSAFLAACDTMDKPER---AIKIFAKM-RQKLRPDIRTYELLF 436
            A +L+D++          A+ A  D++ K +R   A   F ++ R+ +RP++ TY  L 
Sbjct: 173 DAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALV 232

Query: 437 SLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMI--- 493
           +   N +   +   + S             DM +  I  + I+   LL A    G +   
Sbjct: 233 NGLCNSSRWSDAARLLS-------------DMIKKKITPNVITYSALLDAFVKNGKVLEA 279

Query: 494 RELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC 553
           +EL +            TY+++++ L        A ++F  M + G   +  +YN +I+ 
Sbjct: 280 KELFEEMVRMSIDPDIVTYSSLVNGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLING 339

Query: 554 CSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHD 613
               +  +    L   M + G    T+TY  LI+     GD D+A      +   GI  D
Sbjct: 340 FCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPD 399

Query: 614 VLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           +  YN +L   C+ G ++    I E M + ++  D  T   V  G    G    A     
Sbjct: 400 IWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFC 459

Query: 674 VLSMRMLCEEVST 686
            LS++ L  ++ T
Sbjct: 460 SLSLKGLKPDIVT 472


>gi|115461911|ref|NP_001054555.1| Os05g0132000 [Oryza sativa Japonica Group]
 gi|52353663|gb|AAU44229.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113578106|dbj|BAF16469.1| Os05g0132000 [Oryza sativa Japonica Group]
 gi|125550727|gb|EAY96436.1| hypothetical protein OsI_18334 [Oryza sativa Indica Group]
          Length = 637

 Score = 86.7 bits (213), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 75/357 (21%), Positives = 149/357 (41%), Gaps = 23/357 (6%)

Query: 318 QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKAL 377
            M+  G+ P+ +TY+  IRA+  +  +    ++L  M +    P + +  T+     K  
Sbjct: 147 NMRKAGVDPNVYTYNLLIRALCQNDRVDAARKMLDEMSRKGCHPDEVSHGTIVSGMCKLG 206

Query: 378 ELDLAEALLDQISRCTNP--KPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYEL 434
            ++ A   L +    T P    ++A + A     +      +  +M Q+ L+P++ TY  
Sbjct: 207 RVEEARGFLAE----TVPVQASYNAVVHALCGEFRMWEVFSVVNEMVQRGLQPNVVTYTT 262

Query: 435 LFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIR 494
           +              + F +    +   AI   M       + ++   L+K    +G + 
Sbjct: 263 IV-------------DAFCKARELRMACAILARMVSMGCTPNVLTFTALVKGFFEDGKVH 309

Query: 495 ELI---QYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI 551
           + +    +  D      T +YN ++  L    +   A++ F  MK   + PNA TY+ ++
Sbjct: 310 DALSMWHWMVDEGWAPSTISYNVLIRGLCCIGDLKGALDFFNSMKRNALLPNATTYSTLV 369

Query: 552 DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIP 611
           D  S       A  + + M   G  P  + YT +I +L     FD+A +L+D + ++  P
Sbjct: 370 DGFSNAGDLDGAMLIWNEMKSSGCKPNVVVYTNMIDVLCKKMMFDQAESLIDKMLMDNCP 429

Query: 612 HDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSA 668
            + + +NT++ + C+ GR+     +   M +N   P+  T + +  G    G H  A
Sbjct: 430 PNTVTFNTLIGRLCDCGRVGRALNVFHGMRRNGCHPNDRTYNELLHGLFREGNHKDA 486



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/257 (23%), Positives = 116/257 (45%), Gaps = 18/257 (7%)

Query: 415 IKIFAKMRQK-LRPDIRTYELLF-SLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNN 472
           + ++  MR+  + P++ TY LL  +L  N            +VD+A+++     +M+R  
Sbjct: 142 VPVYDNMRKAGVDPNVYTYNLLIRALCQN-----------DRVDAARKMLD---EMSRKG 187

Query: 473 IQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIF 532
                +S   ++  +   G + E   +  ++  P+   +YN V+H+L           + 
Sbjct: 188 CHPDEVSHGTIVSGMCKLGRVEEARGFLAET-VPV-QASYNAVVHALCGEFRMWEVFSVV 245

Query: 533 KQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDY 592
            +M   G+ PN  TY  ++D     R  + A A+++ MV  G  P  +T+TAL+K   + 
Sbjct: 246 NEMVQRGLQPNVVTYTTIVDAFCKARELRMACAILARMVSMGCTPNVLTFTALVKGFFED 305

Query: 593 GDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTC 652
           G   +AL++   +  EG     + YN +++  C  G +         M +N + P+ +T 
Sbjct: 306 GKVHDALSMWHWMVDEGWAPSTISYNVLIRGLCCIGDLKGALDFFNSMKRNALLPNATTY 365

Query: 653 HFVFSGYVNCGFHNSAM 669
             +  G+ N G  + AM
Sbjct: 366 STLVDGFSNAGDLDGAM 382



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 86/356 (24%), Positives = 148/356 (41%), Gaps = 24/356 (6%)

Query: 295 SFSDVIHA-CGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           S++ V+HA CG  +   +   ++ +M   GLQP+  TY   + A    R LR    +L  
Sbjct: 224 SYNAVVHALCGEFRMWEVF-SVVNEMVQRGLQPNVVTYTTIVDAFCKARELRMACAILAR 282

Query: 354 MQQNNLKPQDSTIATLS---VECSKALE-LDLAEALLDQISRCTNPKPFSAFLAACDTMD 409
           M      P   T   L     E  K  + L +   ++D+     +   ++  +     + 
Sbjct: 283 MVSMGCTPNVLTFTALVKGFFEDGKVHDALSMWHWMVDE-GWAPSTISYNVLIRGLCCIG 341

Query: 410 KPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
             + A+  F  M R  L P+  TY  L   F N  A   +G M            I  +M
Sbjct: 342 DLKGALDFFNSMKRNALLPNATTYSTLVDGFSN--AGDLDGAML-----------IWNEM 388

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQES 525
             +  + + +   N++  L  + M  +   LI        P  T T+NT++  L +    
Sbjct: 389 KSSGCKPNVVVYTNMIDVLCKKMMFDQAESLIDKMLMDNCPPNTVTFNTLIGRLCDCGRV 448

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
            RA+ +F  M+  G  PN  TYN ++         K A A+V  M+ +GF    +TY  +
Sbjct: 449 GRALNVFHGMRRNGCHPNDRTYNELLHGLFREGNHKDAFAMVIEMLNNGFELSLVTYNTV 508

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMH 641
           I  L        A+ LL  + ++GI  D   +N I+   C++G++ +   ++ QM+
Sbjct: 509 INCLCQMCMRKHAMLLLGRMMVQGIQPDAFTFNAIIHAYCKEGKVSIAACLLGQMN 564



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 111/569 (19%), Positives = 214/569 (37%), Gaps = 83/569 (14%)

Query: 86  GADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLI 145
           G   + H+L+   R      V+  +  M +  +  N   Y L+++ALC+   ++ A  ++
Sbjct: 121 GVRVYNHLLDALLRENMVGAVVPVYDNMRKAGVDPNVYTYNLLIRALCQNDRVDAARKML 180

Query: 146 YFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVW 205
             +  R G +P    + + +    KL  +  A   L          N V +    +  +W
Sbjct: 181 DEM-SRKGCHPDEVSHGTIVSGMCKLGRVEEARGFLAETVPVQASYNAVVHALCGEFRMW 239

Query: 206 QKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYIN 265
           +   S V+E+ +   +    ++ +    V +F + R+L+ A   L  MV++         
Sbjct: 240 EV-FSVVNEMVQ---RGLQPNVVTYTTIVDAFCKARELRMACAILARMVSMG-------- 287

Query: 266 RTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQ 325
                             N L    +++  F D     G+  +   A  +   M   G  
Sbjct: 288 ---------------CTPNVLTFTALVKGFFED-----GKVHD---ALSMWHWMVDEGWA 324

Query: 326 PSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEAL 385
           PS+ +Y+  IR +     L+  ++    M++N L P  +T +TL    S A +LD A  +
Sbjct: 325 PSTISYNVLIRGLCCIGDLKGALDFFNSMKRNALLPNATTYSTLVDGFSNAGDLDGAMLI 384

Query: 386 LDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAP 445
            +++             + C                    +P++  Y  +  +       
Sbjct: 385 WNEMKS-----------SGC--------------------KPNVVVYTNMIDVLC----- 408

Query: 446 YEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKT 505
             +  MF Q +S   I+ + MD    N   + ++   L+  L   G +   +  F   + 
Sbjct: 409 --KKMMFDQAESL--IDKMLMD----NCPPNTVTFNTLIGRLCDCGRVGRALNVFHGMRR 460

Query: 506 PLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKS 562
               P   TYN +LH L        A  +  +M   G   +  TYN +I+C   +   K 
Sbjct: 461 NGCHPNDRTYNELLHGLFREGNHKDAFAMVIEMLNNGFELSLVTYNTVINCLCQMCMRKH 520

Query: 563 ASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILK 622
           A  L+  M+  G  P   T+ A+I      G    A  LL  ++    P +V+ Y  ++ 
Sbjct: 521 AMLLLGRMMVQGIQPDAFTFNAIIHAYCKEGKVSIAACLLGQMNAVNCPRNVVAYTILIS 580

Query: 623 KACEKGRIDVIEFIIEQMHQNKVQPDPST 651
           + C +G++      + +M    + P+ +T
Sbjct: 581 ELCNQGKLSNAMVYLLKMLYEGICPNEAT 609


>gi|298712182|emb|CBJ33054.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 903

 Score = 86.7 bits (213), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 85/405 (20%), Positives = 157/405 (38%), Gaps = 40/405 (9%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           ++   I  CGR   +  A  L+++M+  G+   +  Y     A       +     L+ +
Sbjct: 232 TYQAAIKVCGRCGKADEAASLLIEMKDGGVPLKTSVYSAVFNAFRRVDHWQAAASTLREI 291

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDK 410
               +KP           C+   E + A  LL  +      +P    ++  +AAC    +
Sbjct: 292 HDWPVKPNVFNYNLAICTCTDCGEWEEALDLLHFMREVGGVEPDVVTYNIVVAACGKAGQ 351

Query: 411 PERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
            E+AI+IF +M +  ++PD+ ++    S  G+     E  ++F +             M 
Sbjct: 352 GEKAIEIFREMSEVGIKPDVISFTTAISACGSCGLSEEALSIFRE-------------ME 398

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP------------------- 510
           R  ++ + I+   ++ A  A G   E + +F +     G                     
Sbjct: 399 RAGVRPNIITHNAVMSACIAAGQWEEALDFFTEVVDGSGAANGGGGGGPPPDPVEVADAC 458

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           +YNT L +    ++  RA+ + + M   G+ P   +YN +I  C        A AL+  M
Sbjct: 459 SYNTALSACEVGEQWGRALSLLRDMPKRGVKPVVISYNTVISACGKCGEGDQALALLREM 518

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
              G  P  +T+ + I  L + G  D+A+ L+  +   G+  D + Y++ L      GR 
Sbjct: 519 PERGLMPDVITFNSAIAALSNSGRPDDAVRLMREMPRAGVAADAITYSSALTGLAHAGRW 578

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
           +    ++ +M    V P   T     +    CG      EAL +L
Sbjct: 579 EQALSLLREMQGAGVSP---TVICYTAAIRACGEAGKGDEALLLL 620



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 110/634 (17%), Positives = 231/634 (36%), Gaps = 79/634 (12%)

Query: 94  LNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYG 153
           L+ C ++      +   R      I L+   Y   + A   GG  E A ++I  +   YG
Sbjct: 166 LDACGKAGRVQEALGLMRDARASGIELDVVSYNCAIPACVTGGDWELALSMIREMEAEYG 225

Query: 154 IYPILPVYNSFLGACAKLHSMVHA-NLCLDLMDSRMVGKNEV---TYTELLKLAVWQKNL 209
           I P    Y + +  C +      A +L +++ D  +  K  V    +    ++  WQ   
Sbjct: 226 IKPNHITYQAAIKVCGRCGKADEAASLLIEMKDGGVPLKTSVYSAVFNAFRRVDHWQAAA 285

Query: 210 SAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSE 269
           S + EI +  +K    ++F+    + + T   + + A + L  M  +  +    +     
Sbjct: 286 STLREIHDWPVKP---NVFNYNLAICTCTDCGEWEEALDLLHFMREVGGVEPDVV----- 337

Query: 270 GRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSH 329
                                    +++ V+ ACG+      A ++  +M  +G++P   
Sbjct: 338 -------------------------TYNIVVAACGKAGQGEKAIEIFREMSEVGIKPDVI 372

Query: 330 TYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI 389
           ++   I A  S       + + + M++  ++P   T   +   C  A + + A     ++
Sbjct: 373 SFTTAISACGSCGLSEEALSIFREMERAGVRPNIITHNAVMSACIAAGQWEEALDFFTEV 432

Query: 390 S-------------------RCTNPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDI 429
                                  +   ++  L+AC+  ++  RA+ +   M ++ ++P +
Sbjct: 433 VDGSGAANGGGGGGPPPDPVEVADACSYNTALSACEVGEQWGRALSLLRDMPKRGVKPVV 492

Query: 430 RTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGA 489
            +Y  + S  G       EG+         +  A+  +M    +    I+  + + AL  
Sbjct: 493 ISYNTVISACGKCG----EGD---------QALALLREMPERGLMPDVITFNSAIAALSN 539

Query: 490 EGMIRELIQYFCD---SKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAAT 546
            G   + ++   +   +       TY++ L  L  A    +A+ + ++M+  G+ P    
Sbjct: 540 SGRPDDAVRLMREMPRAGVAADAITYSSALTGLAHAGRWEQALSLLREMQGAGVSPTVIC 599

Query: 547 YNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVS 606
           Y   I  C        A  L+  M   G  P   +Y+A I      G +++ L LL+ + 
Sbjct: 600 YTAAIRACGEAGKGDEALLLLREMPTAGVTPNLFSYSATISACGKDGRWEQGLALLNEMP 659

Query: 607 LEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHN 666
             G+  +   Y   +      G+ +        M  + +QP         S   +CG  +
Sbjct: 660 ALGLTPNEFCYTAAITGCGIGGQWERAVATFRSMIASGIQPTVVGYTSAVSALAHCGEVD 719

Query: 667 SAMEALQVLSMRMLCEEVSTLEEKRSDFEDLILA 700
            A+E L  +      +E + +E     +  +ILA
Sbjct: 720 LALELLSEM------KEEAGIEPNEQTYAAVILA 747



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 79/376 (21%), Positives = 149/376 (39%), Gaps = 31/376 (8%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           S++ VI ACG+      A  L+ +M   GL P   T++  I A+ +     + + +++ M
Sbjct: 494 SYNTVISACGKCGEGDQALALLREMPERGLMPDVITFNSAIAALSNSGRPDDAVRLMREM 553

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDK 410
            +  +     T ++     + A   + A +LL ++ +     P    ++A + AC    K
Sbjct: 554 PRAGVAADAITYSSALTGLAHAGRWEQALSLLREM-QGAGVSPTVICYTAAIRACGEAGK 612

Query: 411 PERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
            + A+ +  +M    + P++ +Y    S  G  +  +E+G             A+  +M 
Sbjct: 613 GDEALLLLREMPTAGVTPNLFSYSATISACGK-DGRWEQGL------------ALLNEMP 659

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPT---YNTVLHSLVEAQESH 526
              +  +       +   G  G     +  F         PT   Y + + +L    E  
Sbjct: 660 ALGLTPNEFCYTAAITGCGIGGQWERAVATFRSMIASGIQPTVVGYTSAVSALAHCGEVD 719

Query: 527 RAMEIFKQMKT-CGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRD----GFYPQTMT 581
            A+E+  +MK   GI PN  TY  +I  C           LV+ + RD    G  P+   
Sbjct: 720 LALELLSEMKEEAGIEPNEQTYAAVILACG----NGGQGHLVAQVQRDMASAGITPRLTG 775

Query: 582 YTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMH 641
           Y + I+   + G++ EA +LL  +   G+P  V  YN  +    + G+      ++++M 
Sbjct: 776 YLSAIRASGECGNWSEATSLLGEMEAAGVPPTVSCYNAAITACGKSGKWQEALDLLDEMP 835

Query: 642 QNKVQPDPSTCHFVFS 657
              +  D  T     S
Sbjct: 836 GKGLVRDSGTLSAAIS 851



 Score = 40.0 bits (92), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 34/162 (20%), Positives = 66/162 (40%), Gaps = 4/162 (2%)

Query: 502 DSKTP---LGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIR 558
           ++K P   + T  Y+  +  + +      A++I  +M   G  PN+   N  +D C    
Sbjct: 114 NAKAPAAAVSTFVYSKCISRMAKCFRWGEALDILARMAELGAMPNSYCVNAALDACGKAG 173

Query: 559 CFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLE-GIPHDVLLY 617
             + A  L+      G     ++Y   I   +  GD++ AL+++  +  E GI  + + Y
Sbjct: 174 RVQEALGLMRDARASGIELDVVSYNCAIPACVTGGDWELALSMIREMEAEYGIKPNHITY 233

Query: 618 NTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
              +K     G+ D    ++ +M    V    S    VF+ +
Sbjct: 234 QAAIKVCGRCGKADEAASLLIEMKDGGVPLKTSVYSAVFNAF 275


>gi|223948189|gb|ACN28178.1| unknown [Zea mays]
 gi|413935735|gb|AFW70286.1| hypothetical protein ZEAMMB73_980179 [Zea mays]
          Length = 597

 Score = 86.7 bits (213), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 80/374 (21%), Positives = 151/374 (40%), Gaps = 24/374 (6%)

Query: 324 LQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAE 383
            +P    Y+  I A    R L         + +    P + T A L      + +L  AE
Sbjct: 168 FRPDIICYNLLIDAYGQKRQLSEAEAAYMALLEARCVPTEDTYALLLRAYCGSGQLHRAE 227

Query: 384 ALLDQISRCTNPKPFSAFLAACDTMDKP---ERAIKIFAKMR-QKLRPDIRTYELLFSLF 439
            ++ ++ R   P   + + A  D + K    E+A++++ +M+ ++ R +  TY L+ +++
Sbjct: 228 GVISEMQRNGIPPTATVYNAYLDGLLKARCSEKAVEVYQRMKKERCRTNTETYTLMINVY 287

Query: 440 GNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQY 499
           G  N P     +F ++ S            + NI     +   L+ A   EG+  +  + 
Sbjct: 288 GKANQPMSSLRVFREMKSVG---------CKPNI----CTYTALVNAFAREGLCEKAEEV 334

Query: 500 FCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSI 556
           F + +     P    YN ++ +   A     A EIF  M+  G  P+ A+YNI++D    
Sbjct: 335 FEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMEHMGCEPDRASYNILVDAFGR 394

Query: 557 IRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLL 616
               + A A    + + G  P   ++  L+      G+      ++  +   G+  D   
Sbjct: 395 AGLHQEAEAAFQELKQQGMRPTMKSHMLLLSAHARSGNVARCEEVMAQLHKSGLRPDTFA 454

Query: 617 YNTILKKACEKGRIDVIEFIIEQMHQN----KVQPDPSTCHFVFSGYVNCGFHNSAMEAL 672
            N +L      GR+D +E +   M +        PD ST + + + Y   G+ +    A 
Sbjct: 455 LNAMLNAYGRAGRLDDMERLFAAMERGDGAIAGAPDTSTYNVMVNAYGRAGYLDRMEAAF 514

Query: 673 QVLSMRMLCEEVST 686
           + L+ R L  +V T
Sbjct: 515 RSLAARGLAADVVT 528



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 55/268 (20%), Positives = 100/268 (37%), Gaps = 27/268 (10%)

Query: 422 RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAK---------------------- 459
           R   RPDI  Y LL   +G      E    +  +  A+                      
Sbjct: 165 RSSFRPDIICYNLLIDAYGQKRQLSEAEAAYMALLEARCVPTEDTYALLLRAYCGSGQLH 224

Query: 460 RINAIEMDMARNNIQHS----HISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTV 515
           R   +  +M RN I  +    +  +  LLKA  +E  + E+ Q     +    T TY  +
Sbjct: 225 RAEGVISEMQRNGIPPTATVYNAYLDGLLKARCSEKAV-EVYQRMKKERCRTNTETYTLM 283

Query: 516 LHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGF 575
           ++   +A +   ++ +F++MK+ G  PN  TY  +++  +     + A  +   M + G 
Sbjct: 284 INVYGKANQPMSSLRVFREMKSVGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGH 343

Query: 576 YPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEF 635
            P    Y AL++     G    A  +  L+   G   D   YN ++      G     E 
Sbjct: 344 EPDVYAYNALMEAYSRAGLPQGASEIFSLMEHMGCEPDRASYNILVDAFGRAGLHQEAEA 403

Query: 636 IIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
             +++ Q  ++P   +   + S +   G
Sbjct: 404 AFQELKQQGMRPTMKSHMLLLSAHARSG 431



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 59/312 (18%), Positives = 129/312 (41%), Gaps = 34/312 (10%)

Query: 282 PLNALPVMKVLR--------WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDG 333
           P+++L V + ++         +++ +++A  R      AE++  +MQ  G +P  + Y+ 
Sbjct: 293 PMSSLRVFREMKSVGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNA 352

Query: 334 FIRAIVSDRGLRNGM-EVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR- 391
            + A  S  GL  G  E+  +M+    +P  ++   L     +A     AEA   ++ + 
Sbjct: 353 LMEAY-SRAGLPQGASEIFSLMEHMGCEPDRASYNILVDAFGRAGLHQEAEAAFQELKQQ 411

Query: 392 CTNP--KPFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEE 448
              P  K     L+A        R  ++ A++ +  LRPD      + + +G      + 
Sbjct: 412 GMRPTMKSHMLLLSAHARSGNVARCEEVMAQLHKSGLRPDTFALNAMLNAYGRAGRLDDM 471

Query: 449 GNMFSQVDSAKRINAIEMDMARNNIQHSHIS-------MKNLLKALGAEGMIRELIQYFC 501
             +F+ ++      A   D +  N+  +          M+   ++L A G+  +++    
Sbjct: 472 ERLFAAMERGDGAIAGAPDTSTYNVMVNAYGRAGYLDRMEAAFRSLAARGLAADVV---- 527

Query: 502 DSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFK 561
                    T+ + + +    +E  + + +F++M   G  P+A T  +++  CS  R  +
Sbjct: 528 ---------TWTSRIGAYARKKEYGQCLRVFEEMVDAGCYPDAGTAKVLLAACSDERQVE 578

Query: 562 SASALVSMMVRD 573
              A+V  M +D
Sbjct: 579 QVKAIVRSMHKD 590



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 66/379 (17%), Positives = 138/379 (36%), Gaps = 61/379 (16%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           AE ++ +MQ  G+ P++  Y+ ++  ++  R     +EV + M++   +    T  TL +
Sbjct: 226 AEGVISEMQRNGIPPTATVYNAYLDGLLKARCSEKAVEVYQRMKKERCRTNTETY-TLMI 284

Query: 372 ECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDKPERAIKIFAKMRQKL-R 426
                    ++   + +  +    KP    ++A + A       E+A ++F +M+Q    
Sbjct: 285 NVYGKANQPMSSLRVFREMKSVGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHE 344

Query: 427 PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKA 486
           PD+  Y  L   +     P     +FS ++        E D A  NI         L+ A
Sbjct: 345 PDVYAYNALMEAYSRAGLPQGASEIFSLMEHM----GCEPDRASYNI---------LVDA 391

Query: 487 LGAEGMIRELIQYFCDSKTPLGTPTYNT---VLHSLVEAQESHRAMEIFKQMKTCGI--- 540
            G  G+ +E    F + K     PT  +   +L +   +    R  E+  Q+   G+   
Sbjct: 392 FGRAGLHQEAEAAFQELKQQGMRPTMKSHMLLLSAHARSGNVARCEEVMAQLHKSGLRPD 451

Query: 541 ------------------------------------PPNAATYNIMIDCCSIIRCFKSAS 564
                                                P+ +TYN+M++            
Sbjct: 452 TFALNAMLNAYGRAGRLDDMERLFAAMERGDGAIAGAPDTSTYNVMVNAYGRAGYLDRME 511

Query: 565 ALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKA 624
           A    +   G     +T+T+ I       ++ + L + + +   G   D      +L   
Sbjct: 512 AAFRSLAARGLAADVVTWTSRIGAYARKKEYGQCLRVFEEMVDAGCYPDAGTAKVLLAAC 571

Query: 625 CEKGRIDVIEFIIEQMHQN 643
            ++ +++ ++ I+  MH++
Sbjct: 572 SDERQVEQVKAIVRSMHKD 590



 Score = 45.8 bits (107), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 60/324 (18%), Positives = 124/324 (38%), Gaps = 56/324 (17%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ +I+  G+      + ++  +M+S+G +P+  TY   + A   +       EV + M
Sbjct: 279 TYTLMINVYGKANQPMSSLRVFREMKSVGCKPNICTYTALVNAFAREGLCEKAEEVFEEM 338

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMD-KPER 413
           QQ   +P                ++    AL++  SR   P+  S   +  + M  +P+R
Sbjct: 339 QQAGHEP----------------DVYAYNALMEAYSRAGLPQGASEIFSLMEHMGCEPDR 382

Query: 414 A-----IKIFAKM--------------RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQ 454
           A     +  F +               +Q +RP ++++ LL S      A    GN+   
Sbjct: 383 ASYNILVDAFGRAGLHQEAEAAFQELKQQGMRPTMKSHMLLLS------AHARSGNV--- 433

Query: 455 VDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLG------ 508
                R   +   + ++ ++    ++  +L A G  G + ++ + F   +   G      
Sbjct: 434 ----ARCEEVMAQLHKSGLRPDTFALNAMLNAYGRAGRLDDMERLFAAMERGDGAIAGAP 489

Query: 509 -TPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALV 567
            T TYN ++++   A    R    F+ +   G+  +  T+   I   +  + +     + 
Sbjct: 490 DTSTYNVMVNAYGRAGYLDRMEAAFRSLAARGLAADVVTWTSRIGAYARKKEYGQCLRVF 549

Query: 568 SMMVRDGFYPQTMTYTALIKILLD 591
             MV  G YP   T   L+    D
Sbjct: 550 EEMVDAGCYPDAGTAKVLLAACSD 573


>gi|224092336|ref|XP_002309564.1| predicted protein [Populus trichocarpa]
 gi|222855540|gb|EEE93087.1| predicted protein [Populus trichocarpa]
          Length = 593

 Score = 86.7 bits (213), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 87/363 (23%), Positives = 146/363 (40%), Gaps = 22/363 (6%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           ++ S +I+     Q   LA  ++ ++  LGLQP+  T+   I  +         ME+   
Sbjct: 134 YTLSILINCFSHLQRVDLAFSVLAKIIKLGLQPTIVTFTTLINWLCKVGKFAQAMELFDD 193

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPER 413
           M     +P   T  T+     K  E   A  LL ++           +    D+  K  R
Sbjct: 194 MVARGCRPDVYTYTTIINGLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTIIDSHRKDRR 253

Query: 414 ---AIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
              A+ IF+ M+ K + PDI TY  L     N          FSQ    K  +A+  +M 
Sbjct: 254 VNEALDIFSYMKVKGISPDIFTYNSLIQGLCN----------FSQ---WKEASALLNEMR 300

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP----TYNTVLHSLVEAQES 525
             NI    ++   L+  +  EG + E  Q    + T +G      TY+++++      E 
Sbjct: 301 SLNIMPDIVTFNVLVDTICKEGKVSE-AQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEV 359

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
             A ++F  M T G  P+  +YNI+I+    ++    A  L + M+  G  P  ++Y  L
Sbjct: 360 VEARKLFDAMITKGCKPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTL 419

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           I  L   G   EA NL   +   G   ++  Y+ +L   C++G       +   M     
Sbjct: 420 IHGLCQLGSLREARNLFKNMHTNGNLPNLFTYSILLDGFCKQGYFGKAFRLFRAMQSTYS 479

Query: 646 QPD 648
           +P+
Sbjct: 480 KPN 482



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 88/389 (22%), Positives = 163/389 (41%), Gaps = 21/389 (5%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           ++++ +I+   +   +  A  L+ +M+  G QP+  TY   I +   DR +   +++   
Sbjct: 204 YTYTTIINGLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTIIDSHRKDRRVNEALDIFSY 263

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP-FSAFLAACDTM---D 409
           M+   + P   T  +L        +   A ALL+++ R  N  P    F    DT+    
Sbjct: 264 MKVKGISPDIFTYNSLIQGLCNFSQWKEASALLNEM-RSLNIMPDIVTFNVLVDTICKEG 322

Query: 410 KPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
           K   A  +   M +  + PD+ TY  L   +   +   E   +F     A      + D+
Sbjct: 323 KVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARKLFD----AMITKGCKPDV 378

Query: 469 ARNNIQ-HSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHR 527
              NI  + +  +K + +A   + +  E+I       TP    +YNT++H L +      
Sbjct: 379 FSYNILINGYCKVKRIDEA---KQLFNEMIH---QGLTP-NNVSYNTLIHGLCQLGSLRE 431

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A  +FK M T G  PN  TY+I++D       F  A  L   M      P  + Y  LI 
Sbjct: 432 ARNLFKNMHTNGNLPNLFTYSILLDGFCKQGYFGKAFRLFRAMQSTYSKPNLVMYNILID 491

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
            +   G+  +A  L   + ++G+  +  +Y TI+   C++G +D        M ++   P
Sbjct: 492 AMCKSGNLRDARKLFSELFVKGLQPNAQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPP 551

Query: 648 DPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
           D  + + +  G+++   H     A+Q++ 
Sbjct: 552 DEISYNVIIRGFLH---HKDESRAVQLIG 577



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 110/238 (46%), Gaps = 16/238 (6%)

Query: 425 LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLL 484
           L P+I T  +L + F ++           +VD A  + A    + +  +Q + ++   L+
Sbjct: 129 LSPNIYTLSILINCFSHL----------QRVDLAFSVLA---KIIKLGLQPTIVTFTTLI 175

Query: 485 KALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIP 541
             L   G   + ++ F D       P   TY T+++ L +  E+  A  + K+M+  G  
Sbjct: 176 NWLCKVGKFAQAMELFDDMVARGCRPDVYTYTTIINGLCKIGETAAAAGLLKKMEEAGCQ 235

Query: 542 PNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNL 601
           PN  TY+ +ID     R    A  + S M   G  P   TY +LI+ L ++  + EA  L
Sbjct: 236 PNVVTYSTIIDSHRKDRRVNEALDIFSYMKVKGISPDIFTYNSLIQGLCNFSQWKEASAL 295

Query: 602 LDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
           L+ +    I  D++ +N ++   C++G++   + +++ M +  V+PD  T   +  GY
Sbjct: 296 LNEMRSLNIMPDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGY 353



 Score = 69.7 bits (169), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 86/176 (48%), Gaps = 1/176 (0%)

Query: 512 YNTVLHSLVE-AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           +  +L ++V+  Q     + + KQM+  G+ PN  T +I+I+C S ++    A ++++ +
Sbjct: 100 FTKLLSAIVKMGQYYDTVISLTKQMELAGLSPNIYTLSILINCFSHLQRVDLAFSVLAKI 159

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           ++ G  P  +T+T LI  L   G F +A+ L D +   G   DV  Y TI+   C+ G  
Sbjct: 160 IKLGLQPTIVTFTTLINWLCKVGKFAQAMELFDDMVARGCRPDVYTYTTIINGLCKIGET 219

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
                ++++M +   QP+  T   +   +      N A++    + ++ +  ++ T
Sbjct: 220 AAAAGLLKKMEEAGCQPNVVTYSTIIDSHRKDRRVNEALDIFSYMKVKGISPDIFT 275


>gi|215794293|gb|ACJ70132.1| restorer-of-fertility [Brassica napus]
          Length = 667

 Score = 86.7 bits (213), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 92/396 (23%), Positives = 158/396 (39%), Gaps = 31/396 (7%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           +S +I    +      A+ L  +MQ  G+ P+  TY+  I    S         +L+ M 
Sbjct: 251 YSAIIDGLWKDGRQTDAQNLFSEMQEKGISPNLFTYNCMINGFCSSGRWSEAQRLLREMF 310

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQI---SRCTNPKPFSAFLAACDTMDKPE 412
           +  + P   T + L     K  +   AE L +++       N   +++ +      ++ +
Sbjct: 311 ERKMSPDVVTFSVLINALVKEGKFFEAEELYNEMLPRGIIPNTITYNSMIDGFSKQNRLD 370

Query: 413 RAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471
            A ++F  M  K   PD+ T+ +L    G   A   +  M   +    R   +   +   
Sbjct: 371 AAERMFYLMATKGCSPDVITFSILID--GYCGAKRVDDGM-KLLHEMSRRGLVANTITYT 427

Query: 472 NIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEI 531
            + H    + NL  AL       +L+Q    S       T NT+L  L    +   A+E+
Sbjct: 428 TLIHGFCQLGNLNAAL-------DLLQEMISSGVCPNVVTCNTLLDGLCNNGKLKDALEM 480

Query: 532 FKQMKTC-----------GIPPNAATYNIMIDCCSIIR--CFKSASALVSMMVRDGFYPQ 578
           FK M+              + P+  TYNI+I  C +I    F  A  L   M   G  P 
Sbjct: 481 FKVMQKSKMDLDASHPFNDVEPDVQTYNILI--CGLINEGKFSEAEELYEEMPHRGLVPD 538

Query: 579 TMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI-DVIEFII 637
           T+TY ++I  L      DEA  + D +  +G   DV+ + T++   C+ GR+ D +E   
Sbjct: 539 TITYNSVIDGLCKQSRLDEATQMFDSMGSKGFSPDVVTFTTLINGYCKVGRVGDGLEVFC 598

Query: 638 EQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           E M +  +  +  T   +  G+   G  N A++  Q
Sbjct: 599 E-MGRRGIVANAITYRTLIHGFCQVGNINGALDIFQ 633



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 91/413 (22%), Positives = 171/413 (41%), Gaps = 24/413 (5%)

Query: 272 LRSSRLDIPIPLNALPVMKVLR---WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSS 328
           +R  R D+ I L+    M+ +    +SF+ +I           A     ++  LG  PS 
Sbjct: 87  VRMERPDVVISLHRKMEMRRIPCNIYSFTILIKCFCSCSKLPFALSTFGKITKLGFHPSL 146

Query: 329 HTYDGFIRAI-VSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLD 387
            T+   +  + V DR      E L    Q   KP      TL     +   +  A ALLD
Sbjct: 147 VTFSTLLHGLCVEDRV----SEALHFFHQI-CKPNVIAFTTLMNGLCREGRVVEAVALLD 201

Query: 388 QISR---CTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ--KLRPDIRTYELLFSLFGNV 442
           ++       N   +   +     M     A+ +  KM +  +++P++  Y  +       
Sbjct: 202 RMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSRIKPNVVIYSAIIDGLWKD 261

Query: 443 NAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCD 502
               +  N+FS++         E  ++ N   ++   M N   + G     + L++   +
Sbjct: 262 GRQTDAQNLFSEMQ--------EKGISPNLFTYN--CMINGFCSSGRWSEAQRLLREMFE 311

Query: 503 SKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKS 562
            K      T++ ++++LV+  +   A E++ +M   GI PN  TYN MID  S      +
Sbjct: 312 RKMSPDVVTFSVLINALVKEGKFFEAEELYNEMLPRGIIPNTITYNSMIDGFSKQNRLDA 371

Query: 563 ASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILK 622
           A  +  +M   G  P  +T++ LI         D+ + LL  +S  G+  + + Y T++ 
Sbjct: 372 AERMFYLMATKGCSPDVITFSILIDGYCGAKRVDDGMKLLHEMSRRGLVANTITYTTLIH 431

Query: 623 KACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
             C+ G ++    ++++M  + V P+  TC+ +  G  N G    A+E  +V+
Sbjct: 432 GFCQLGNLNAALDLLQEMISSGVCPNVVTCNTLLDGLCNNGKLKDALEMFKVM 484



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 70/286 (24%), Positives = 119/286 (41%), Gaps = 18/286 (6%)

Query: 398 FSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDS 457
           FS  L      D+   A+  F    Q  +P++  +  L      +N    EG +   V  
Sbjct: 149 FSTLLHGLCVEDRVSEALHFF---HQICKPNVIAFTTL------MNGLCREGRVVEAVAL 199

Query: 458 AKRINAIEMDMARNNIQHSHI--SMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTV 515
             R+  +E  +  N I +  I   M  +   + A  ++R++ +    S+       Y+ +
Sbjct: 200 LDRM--VEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEV---SRIKPNVVIYSAI 254

Query: 516 LHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC-CSIIRCFKSASALVSMMVRDG 574
           +  L +      A  +F +M+  GI PN  TYN MI+  CS  R +  A  L+  M    
Sbjct: 255 IDGLWKDGRQTDAQNLFSEMQEKGISPNLFTYNCMINGFCSSGR-WSEAQRLLREMFERK 313

Query: 575 FYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIE 634
             P  +T++ LI  L+  G F EA  L + +   GI  + + YN+++    ++ R+D  E
Sbjct: 314 MSPDVVTFSVLINALVKEGKFFEAEELYNEMLPRGIIPNTITYNSMIDGFSKQNRLDAAE 373

Query: 635 FIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRML 680
            +   M      PD  T   +  GY      +  M+ L  +S R L
Sbjct: 374 RMFYLMATKGCSPDVITFSILIDGYCGAKRVDDGMKLLHEMSRRGL 419



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 106/508 (20%), Positives = 198/508 (38%), Gaps = 50/508 (9%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHA-NLCLDL 183
           +  +M  LC+ G + EA  L+  + E  G+ P    Y + +    K+   V A NL   +
Sbjct: 180 FTTLMNGLCREGRVVEAVALLDRMVED-GLQPNQITYGTIVDGMCKMGDTVSALNLLRKM 238

Query: 184 MDSRMVGKNEVTYTELLKLAVWQ--KNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLR 241
            +   +  N V Y+ ++   +W+  +   A +   E   K  S ++F+    +  F    
Sbjct: 239 EEVSRIKPNVVIYSAIID-GLWKDGRQTDAQNLFSEMQEKGISPNLFTYNCMINGFCSSG 297

Query: 242 DLKSAYETLQHMVALAMMG-----KLYINR-TSEGRLRSSR--LDIPIPLNALPVMKVLR 293
               A   L+ M    M        + IN    EG+   +    +  +P   +P      
Sbjct: 298 RWSEAQRLLREMFERKMSPDVVTFSVLINALVKEGKFFEAEELYNEMLPRGIIPNT---- 353

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
            +++ +I    +      AE++   M + G  P   T+   I      + + +GM++L  
Sbjct: 354 ITYNSMIDGFSKQNRLDAAERMFYLMATKGCSPDVITFSILIDGYCGAKRVDDGMKLLHE 413

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI---SRCTNPKPFSAFLAACDTMDK 410
           M +  L     T  TL     +   L+ A  LL ++     C N    +  L       K
Sbjct: 414 MSRRGLVANTITYTTLIHGFCQLGNLNAALDLLQEMISSGVCPNVVTCNTLLDGLCNNGK 473

Query: 411 PERAIKIFAKMRQK------------LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSA 458
            + A+++F  M++             + PD++TY +L  + G +N    EG  FS+ +  
Sbjct: 474 LKDALEMFKVMQKSKMDLDASHPFNDVEPDVQTYNIL--ICGLIN----EGK-FSEAEE- 525

Query: 459 KRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLG-TP---TYNT 514
                +  +M    +    I+  +++  L  +  + E  Q F DS    G +P   T+ T
Sbjct: 526 -----LYEEMPHRGLVPDTITYNSVIDGLCKQSRLDEATQMF-DSMGSKGFSPDVVTFTT 579

Query: 515 VLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDG 574
           +++   +       +E+F +M   GI  NA TY  +I     +     A  +   M+  G
Sbjct: 580 LINGYCKVGRVGDGLEVFCEMGRRGIVANAITYRTLIHGFCQVGNINGALDIFQEMISSG 639

Query: 575 FYPQTMTYTALIKILLDYGDFDEALNLL 602
            YP T+T   ++  L    +   A+  L
Sbjct: 640 VYPDTITIRNMLTGLWSKEELKRAVQCL 667



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/176 (21%), Positives = 80/176 (45%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TYN +++    +     A  + ++M    + P+  T++++I+       F  A  L + M
Sbjct: 285 TYNCMINGFCSSGRWSEAQRLLREMFERKMSPDVVTFSVLINALVKEGKFFEAEELYNEM 344

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           +  G  P T+TY ++I         D A  +  L++ +G   DV+ ++ ++   C   R+
Sbjct: 345 LPRGIIPNTITYNSMIDGFSKQNRLDAAERMFYLMATKGCSPDVITFSILIDGYCGAKRV 404

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           D    ++ +M +  +  +  T   +  G+   G  N+A++ LQ +    +C  V T
Sbjct: 405 DDGMKLLHEMSRRGLVANTITYTTLIHGFCQLGNLNAALDLLQEMISSGVCPNVVT 460



 Score = 48.1 bits (113), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 90/197 (45%), Gaps = 16/197 (8%)

Query: 495 ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC- 553
           +L  Y   S+       +  +L  +V  +     + + ++M+   IP N  ++ I+I C 
Sbjct: 62  DLFGYMVRSRPLPCVIDFCKLLGVVVRMERPDVVISLHRKMEMRRIPCNIYSFTILIKCF 121

Query: 554 CSIIRCFKSASALVSM--MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIP 611
           CS   C K   AL +   + + GF+P  +T++ L+  L       EAL+    +      
Sbjct: 122 CS---CSKLPFALSTFGKITKLGFHPSLVTFSTLLHGLCVEDRVSEALHFFHQIC----K 174

Query: 612 HDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEA 671
            +V+ + T++   C +GR+     ++++M ++ +QP+  T   +  G    G   SA+  
Sbjct: 175 PNVIAFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNL 234

Query: 672 LQVLSMRMLCEEVSTLE 688
           L+ +      EEVS ++
Sbjct: 235 LRKM------EEVSRIK 245


>gi|302829725|ref|XP_002946429.1| hypothetical protein VOLCADRAFT_103021 [Volvox carteri f.
           nagariensis]
 gi|300268175|gb|EFJ52356.1| hypothetical protein VOLCADRAFT_103021 [Volvox carteri f.
           nagariensis]
          Length = 961

 Score = 86.7 bits (213), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 75/339 (22%), Positives = 140/339 (41%), Gaps = 49/339 (14%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           ++++ +I  CG  Q    A +L+ +M+S G+  + HTY   +   +    L    +V K 
Sbjct: 277 YTYTTMISQCGSHQQLRRALELVAEMRSRGIDCNVHTYSALMNVCIKANELDLAQDVYKQ 336

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDK 410
           M +    P   T   L     K  + + A  +LD + +       + ++  ++AC+   +
Sbjct: 337 MLEEGCSPNLVTYNILIDVYVKRCQWEEAVKVLDTLEKQAIQAEVRTYNTVISACNKSGQ 396

Query: 411 PERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
           PE+A+K++ KM    ++P   TY  L S +G             QV+ A  I        
Sbjct: 397 PEQALKVYEKMLAAGVKPSATTYTALISAYGKKG----------QVEKALEI-------- 438

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAM 529
                                   R++I+  C+        TY++++ +  +A     A+
Sbjct: 439 -----------------------FRDMIRRGCERN----VITYSSLISACEKAGRWEMAL 471

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
           E+F +M      PN  T+N +I  CS    ++ AS L   M   G  P ++TY  LI   
Sbjct: 472 ELFSKMHKENCKPNVVTFNSLIAACSHGGHWEKASELFEQMQTQGCKPDSITYCGLITAY 531

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
              G +  AL   + +  +G   D  ++N++++   + G
Sbjct: 532 ERGGQWRRALKAFEQMQTQGCHPDAAVFNSLMEVLWQSG 570



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 99/219 (45%), Gaps = 22/219 (10%)

Query: 479 SMKNLLKALGAEGMIRELIQYF---------------CDSKTPLGTPTYNTVLHSLVEAQ 523
           +M  LLK L  +G ++  ++ F               CD        TY T++      Q
Sbjct: 237 AMAALLKELAKQGYLKRAVEIFDWLRNLEPSHELSSLCD------LYTYTTMISQCGSHQ 290

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
           +  RA+E+  +M++ GI  N  TY+ +++ C        A  +   M+ +G  P  +TY 
Sbjct: 291 QLRRALELVAEMRSRGIDCNVHTYSALMNVCIKANELDLAQDVYKQMLEEGCSPNLVTYN 350

Query: 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
            LI + +    ++EA+ +LD +  + I  +V  YNT++    + G+ +    + E+M   
Sbjct: 351 ILIDVYVKRCQWEEAVKVLDTLEKQAIQAEVRTYNTVISACNKSGQPEQALKVYEKMLAA 410

Query: 644 KVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCE 682
            V+P  +T   + S Y   G    A+E  + + +R  CE
Sbjct: 411 GVKPSATTYTALISAYGKKGQVEKALEIFRDM-IRRGCE 448



 Score = 66.2 bits (160), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 77/163 (47%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TYNTV+ +  ++ +  +A++++++M   G+ P+A TY  +I         + A  +   M
Sbjct: 383 TYNTVISACNKSGQPEQALKVYEKMLAAGVKPSATTYTALISAYGKKGQVEKALEIFRDM 442

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           +R G     +TY++LI      G ++ AL L   +  E    +V+ +N+++      G  
Sbjct: 443 IRRGCERNVITYSSLISACEKAGRWEMALELFSKMHKENCKPNVVTFNSLIAACSHGGHW 502

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           +    + EQM     +PD  T   + + Y   G    A++A +
Sbjct: 503 EKASELFEQMQTQGCKPDSITYCGLITAYERGGQWRRALKAFE 545



 Score = 59.7 bits (143), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 84/196 (42%), Gaps = 37/196 (18%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC----CS----------- 555
           TY+ +++  ++A E   A +++KQM   G  PN  TYNI+ID     C            
Sbjct: 313 TYSALMNVCIKANELDLAQDVYKQMLEEGCSPNLVTYNILIDVYVKRCQWEEAVKVLDTL 372

Query: 556 ---------------IIRCFKS-----ASALVSMMVRDGFYPQTMTYTALIKILLDYGDF 595
                          I  C KS     A  +   M+  G  P   TYTALI      G  
Sbjct: 373 EKQAIQAEVRTYNTVISACNKSGQPEQALKVYEKMLAAGVKPSATTYTALISAYGKKGQV 432

Query: 596 DEALNLLDLVSLEGIPHDVLLYNTILKKACEK-GRIDVIEFIIEQMHQNKVQPDPSTCHF 654
           ++AL +   +   G   +V+ Y++++  ACEK GR ++   +  +MH+   +P+  T + 
Sbjct: 433 EKALEIFRDMIRRGCERNVITYSSLI-SACEKAGRWEMALELFSKMHKENCKPNVVTFNS 491

Query: 655 VFSGYVNCGFHNSAME 670
           + +   + G    A E
Sbjct: 492 LIAACSHGGHWEKASE 507


>gi|296083846|emb|CBI24234.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score = 86.7 bits (213), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 94/383 (24%), Positives = 155/383 (40%), Gaps = 22/383 (5%)

Query: 311 LAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLS 370
           + E L+L   + G  P    +D  +R  V  R LR G E  ++++   L    +   +L 
Sbjct: 12  IVESLVLTYGNCGSNP--LVFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLL 69

Query: 371 VECSKALELDLAEALLDQISRC---TNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LR 426
               K   +DLA  +  ++ R     N    +  + A     K E      + M +K + 
Sbjct: 70  GGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVF 129

Query: 427 PDIRTYELLFSLFGNVNAPYEEG---NMFSQVDSAKRINAIEMDMARNNIQHSHISMKNL 483
           PD+ TY  L      +NA   +G     F  +DS             N I +        
Sbjct: 130 PDVVTYNTL------INAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKY 183

Query: 484 LKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPN 543
           L+A   +G++ E+++      +P  T TYN +L           A  IF +M + G+ P+
Sbjct: 184 LRA---KGVLDEMLKI---GMSP-DTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPD 236

Query: 544 AATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLD 603
             +++ +I   S   C   A      M   G  P  + YT LI      G   EAL + D
Sbjct: 237 LVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRD 296

Query: 604 LVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
            +  +G   DV+ YNTIL   C++  +   + +  +M +  V PD  T   + +GY   G
Sbjct: 297 EMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDG 356

Query: 664 FHNSAMEALQVLSMRMLCEEVST 686
             N A+   +++  R L  +V T
Sbjct: 357 NMNKAVTLFEMMIQRNLKPDVVT 379



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 98/427 (22%), Positives = 164/427 (38%), Gaps = 67/427 (15%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A +LM  M   GL+P   TY+  I  +           VL  M +  + P  +T   L V
Sbjct: 151 AFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLV 210

Query: 372 ECSKALELDLAEALLDQI-SRCTNPK--PFSAFLAACDTMDKPERAIKIFAKMRQK-LRP 427
           EC +   +  AE + D++ S+   P    FSA +         ++A+K F  M+   L P
Sbjct: 211 ECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAP 270

Query: 428 DIRTYELLFSLF---GNVNAP-------YEEGNMFSQVDSAKRINAI-------EMD--- 467
           D   Y +L   F   G ++          E+G +   V     +N +       E D   
Sbjct: 271 DNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELF 330

Query: 468 --MARNNIQHSHISMKNLLKALGAEGMIRELIQYF---CDSKTPLGTPTYNTVLHSLVEA 522
             M    +     +   L+     +G + + +  F             TYNT++    + 
Sbjct: 331 TEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKG 390

Query: 523 QESHRAMEIFKQMKTCGIPPNAATYNIMID-----------------------------C 553
            E  +  E++  M +  I PN  +Y I+I+                             C
Sbjct: 391 SEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITC 450

Query: 554 CSIIRCF------KSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSL 607
            +I++ +        A   +S M+  G  P  +TY  LI   +   + D A  L++ +  
Sbjct: 451 NTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMEN 510

Query: 608 EGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNS 667
            G+  DV+ YN IL     +GR+   E I+ +M +  V PD ST   + +G+V     N+
Sbjct: 511 SGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVT---QNN 567

Query: 668 AMEALQV 674
             EA +V
Sbjct: 568 LKEAFRV 574



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 110/518 (21%), Positives = 207/518 (39%), Gaps = 70/518 (13%)

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
           MEEK +  +   Y  ++ A C+ G LEEA  L+  +  + G+ P +  YN+ +    K  
Sbjct: 123 MEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGK-GLKPCVFTYNAIINGLCKTG 181

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDY--------IKHYS 224
             + A   LD M    +  +  TY  LL       N+     I+++         +  +S
Sbjct: 182 KYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFS 241

Query: 225 LSIFSLRK---FVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRT-SEG-RLRSSRLDI 279
             I  L K      +    RD+K+A     +++   ++G    N   SE  ++R   L+ 
Sbjct: 242 ALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQ 301

Query: 280 PIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIV 339
              L+ +        +++ +++   + +    A++L  +M   G+ P  +T+   I    
Sbjct: 302 GCVLDVV--------TYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYS 353

Query: 340 SDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALL-DQISRCTNPK-- 396
            D  +   + + ++M Q NLKP   T  TL     K  E++    L  D ISR   P   
Sbjct: 354 KDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHI 413

Query: 397 PFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVD 456
            +   +     M     A +++ +M +K       +E        +   Y          
Sbjct: 414 SYGILINGYCNMGCVSEAFRLWDEMVEK------GFEATIITCNTIVKGY---------- 457

Query: 457 SAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVL 516
             +  NA++ D   +N+         LLK +  +G+                  TYNT++
Sbjct: 458 -CRAGNAVKADEFLSNM---------LLKGIVPDGI------------------TYNTLI 489

Query: 517 HSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFY 576
           +  ++ +   RA  +  +M+  G+ P+  TYN++++  S     + A  ++  M+  G  
Sbjct: 490 NGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVN 549

Query: 577 PQTMTYTALIKILLDYGDFDEALNLLDLVSLEG-IPHD 613
           P   TYT+LI   +   +  EA  + D +   G +P D
Sbjct: 550 PDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVPDD 587



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 79/362 (21%), Positives = 153/362 (42%), Gaps = 24/362 (6%)

Query: 311 LAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL- 369
           LA ++  ++   G+Q + +T +  I A+  ++ + N    L  M++  + P   T  TL 
Sbjct: 80  LAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLI 139

Query: 370 SVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDKPERAIKIFAKM-RQK 424
           +  C + L L+ A  L+D +S     KP    ++A +       K  RA  +  +M +  
Sbjct: 140 NAYCRQGL-LEEAFELMDSMSG-KGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIG 197

Query: 425 LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLL 484
           + PD  TY +L      V     +  M      A+RI     +M    +    +S   L+
Sbjct: 198 MSPDTATYNILL-----VECCRNDNMM-----DAERIFD---EMPSQGVVPDLVSFSALI 244

Query: 485 KALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIP 541
             L   G + + ++YF D K     P    Y  ++           A+++  +M   G  
Sbjct: 245 GLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCV 304

Query: 542 PNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNL 601
            +  TYN +++     +    A  L + M   G +P   T+T LI      G+ ++A+ L
Sbjct: 305 LDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTL 364

Query: 602 LDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVN 661
            +++    +  DV+ YNT++   C+   ++ +  +   M   ++ P+  +   + +GY N
Sbjct: 365 FEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCN 424

Query: 662 CG 663
            G
Sbjct: 425 MG 426


>gi|296083214|emb|CBI22850.3| unnamed protein product [Vitis vinifera]
          Length = 724

 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 74/339 (21%), Positives = 150/339 (44%), Gaps = 21/339 (6%)

Query: 318 QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKAL 377
            M+  G++P+  TY+  ++A+  +  +    ++L  M      P + +  TL     K  
Sbjct: 171 NMKKDGMEPNVFTYNILLKALCKNNRVDGAHKLLVEMSSKGCDPDEVSYTTLISSLCKLG 230

Query: 378 ELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLF 436
           ++  A  L   +S   +   ++A +         E A ++  +M  K + P++ +Y  + 
Sbjct: 231 KVKEAREL--AMSFTPSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGIDPNVISYTTI- 287

Query: 437 SLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIREL 496
                +NA  + GN+   +    ++       AR    + H +  +L+K    +G   E 
Sbjct: 288 -----INALSDAGNVELSLAVLAKM------FARGCSPNLH-TFTSLIKGFFLKGGSHEA 335

Query: 497 IQYFCDSKTPLGTP----TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID 552
           + ++ D     G       YN ++H L   +    A+ +F QM+  G  PN  TY+ +ID
Sbjct: 336 LDFW-DRMIREGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALID 394

Query: 553 CCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPH 612
             +       AS + + M+  G +P  + YT ++ +L     F++A  L++ + +E  P 
Sbjct: 395 GYAKAGDLDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPP 454

Query: 613 DVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
           + + +NT +K  C  GR+D    + +QM  +   P+ +T
Sbjct: 455 NTVTFNTFIKGLCGSGRVDWAIKVFDQMGNSGCFPNTTT 493



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 73/324 (22%), Positives = 139/324 (42%), Gaps = 36/324 (11%)

Query: 378 ELDLAEALLDQIS----RCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTY 432
           E+D  + LL Q+      C+    F + + +       E+A+K F +M+  +++P ++ Y
Sbjct: 91  EMDCVQYLLQQMKLEGISCSE-DLFISVIGSYRRAGSSEQALKTFYRMQDFRVKPTVKIY 149

Query: 433 -------------ELLFSLFGNVNAPYEEGNMFS------------QVDSAKRINAIEMD 467
                        +++  ++ N+     E N+F+            +VD A ++    ++
Sbjct: 150 NHILDALLDENRFQMINPIYSNMKKDGMEPNVFTYNILLKALCKNNRVDGAHKL---LVE 206

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHR 527
           M+        +S   L+ +L   G ++E  +    S TP   P YN +++ + +      
Sbjct: 207 MSSKGCDPDEVSYTTLISSLCKLGKVKE-ARELAMSFTP-SVPVYNALINGVCKEYTFEE 264

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A ++  +M   GI PN  +Y  +I+  S     + + A+++ M   G  P   T+T+LIK
Sbjct: 265 AFQLLDEMMNKGIDPNVISYTTIINALSDAGNVELSLAVLAKMFARGCSPNLHTFTSLIK 324

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
                G   EAL+  D +  EG+  +V+ YN ++   C K  +     +  QM  N   P
Sbjct: 325 GFFLKGGSHEALDFWDRMIREGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCP 384

Query: 648 DPSTCHFVFSGYVNCGFHNSAMEA 671
           +  T   +  GY   G  + A E 
Sbjct: 385 NVRTYSALIDGYAKAGDLDGASEV 408



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 87/385 (22%), Positives = 153/385 (39%), Gaps = 32/385 (8%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLS- 370
           A QL+ +M + G+ P+  +Y   I A+     +   + VL  M      P   T  +L  
Sbjct: 265 AFQLLDEMMNKGIDPNVISYTTIINALSDAGNVELSLAVLAKMFARGCSPNLHTFTSLIK 324

Query: 371 ---VECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMR-QKLR 426
              ++      LD  + ++ +     N   ++A +    +      A+ +F +M      
Sbjct: 325 GFFLKGGSHEALDFWDRMIRE-GVVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCC 383

Query: 427 PDIRTYELLFSLF---GNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNL 483
           P++RTY  L   +   G+++   E  N                 M  +    + ++   +
Sbjct: 384 PNVRTYSALIDGYAKAGDLDGASEVWNW----------------MITHGCHPNVVAYTCM 427

Query: 484 LKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGI 540
           +  L    M  +   LI+       P  T T+NT +  L  +     A+++F QM   G 
Sbjct: 428 VDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLCGSGRVDWAIKVFDQMGNSGC 487

Query: 541 PPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALN 600
            PN  TYN ++D     R F  A  LV  M   G     +TY  +I      G   EAL 
Sbjct: 488 FPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIELNLVTYNTIIYGYCCAGMLGEALE 547

Query: 601 LLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYV 660
           LL  + + G   D +  N ++   C++G++++   +++++   K  PD      + SG  
Sbjct: 548 LLGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAIQLMDRLSAGKWHPDIIAYTSLISGIC 607

Query: 661 NCGFHNSAMEALQVLSMRMLCEEVS 685
               H    EA+  L  RML E +S
Sbjct: 608 T---HIGVEEAIVYLR-RMLSEGIS 628



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 132/664 (19%), Positives = 255/664 (38%), Gaps = 65/664 (9%)

Query: 24  KHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHH 83
           KHE  ++   LE  +++  +       ++   QM I       E     +LL  +     
Sbjct: 51  KHEH-DITLALEYFKSIANSKSFKHTPLT--YQMMIEKLASEREMDCVQYLLQQMKLEGI 107

Query: 84  SLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASN 143
           S   D F  ++    R+      ++T+  M++  +    K Y  ++ AL      +   N
Sbjct: 108 SCSEDLFISVIGSYRRAGSSEQALKTFYRMQDFRVKPTVKIYNHILDALLDENRFQMI-N 166

Query: 144 LIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLA 203
            IY   ++ G+ P +  YN  L A  K + +  A+  L  M S+    +EV+YT L+   
Sbjct: 167 PIYSNMKKDGMEPNVFTYNILLKALCKNNRVDGAHKLLVEMSSKGCDPDEVSYTTLISSL 226

Query: 204 VWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLY 263
                L  V E  E  +  ++ S+      +    +    + A++ L  M          
Sbjct: 227 C---KLGKVKEARELAMS-FTPSVPVYNALINGVCKEYTFEEAFQLLDEM---------- 272

Query: 264 INRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLG 323
                        ++  I  N +        S++ +I+A     N  L+  ++ +M + G
Sbjct: 273 -------------MNKGIDPNVI--------SYTTIINALSDAGNVELSLAVLAKMFARG 311

Query: 324 LQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTI-ATLSVECSKALELDLA 382
             P+ HT+   I+      G    ++    M +  + P      A +   CSK   L  A
Sbjct: 312 CSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIREGVVPNVVAYNALMHGLCSKR-SLGDA 370

Query: 383 EALLDQI---SRCTNPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSL 438
            ++ +Q+     C N + +SA +         + A +++  M      P++  Y  +  +
Sbjct: 371 VSVFNQMEINGCCPNVRTYSALIDGYAKAGDLDGASEVWNWMITHGCHPNVVAYTCMVDV 430

Query: 439 FGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQ 498
                      +MF+Q         +  +M   N   + ++    +K L   G +   I+
Sbjct: 431 LC-------RNSMFNQA------YCLIENMQVENCPPNTVTFNTFIKGLCGSGRVDWAIK 477

Query: 499 YF---CDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID--C 553
            F    +S     T TYN +L SL++ +    A  + K M+  GI  N  TYN +I   C
Sbjct: 478 VFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIELNLVTYNTIIYGYC 537

Query: 554 CSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHD 613
           C+ +     A  L+  MV  G  P  +T   +I      G  + A+ L+D +S      D
Sbjct: 538 CAGM--LGEALELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAIQLMDRLSAGKWHPD 595

Query: 614 VLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           ++ Y +++   C    ++     + +M    + P+ +T + +     +   H+ A++ L 
Sbjct: 596 IIAYTSLISGICTHIGVEEAIVYLRRMLSEGISPNVATWNVLVRHLFSNMGHSGAVQFLD 655

Query: 674 VLSM 677
             S+
Sbjct: 656 ASSI 659


>gi|222630089|gb|EEE62221.1| hypothetical protein OsJ_17008 [Oryza sativa Japonica Group]
          Length = 584

 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 75/357 (21%), Positives = 149/357 (41%), Gaps = 23/357 (6%)

Query: 318 QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKAL 377
            M+  G+ P+ +TY+  IRA+  +  +    ++L  M +    P + +  T+     K  
Sbjct: 94  NMRKAGVDPNVYTYNLLIRALCQNDRVDAARKMLDEMSRKGCHPDEVSHGTIVSGMCKLG 153

Query: 378 ELDLAEALLDQISRCTNP--KPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYEL 434
            ++ A   L +    T P    ++A + A     +      +  +M Q+ L+P++ TY  
Sbjct: 154 RVEEARGFLAE----TVPVQASYNAVVHALCGEFRMWEVFSVVNEMVQRGLQPNVVTYTT 209

Query: 435 LFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIR 494
           +              + F +    +   AI   M       + ++   L+K    +G + 
Sbjct: 210 IV-------------DAFCKARELRMACAILARMVSMGCTPNVLTFTALVKGFFEDGKVH 256

Query: 495 ELI---QYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI 551
           + +    +  D      T +YN ++  L    +   A++ F  MK   + PNA TY+ ++
Sbjct: 257 DALSMWHWMVDEGWAPSTISYNVLIRGLCCIGDLKGALDFFNSMKRNALLPNATTYSTLV 316

Query: 552 DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIP 611
           D  S       A  + + M   G  P  + YT +I +L     FD+A +L+D + ++  P
Sbjct: 317 DGFSNAGDLDGAMLIWNEMKSSGCKPNVVVYTNMIDVLCKKMMFDQAESLIDKMLMDNCP 376

Query: 612 HDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSA 668
            + + +NT++ + C+ GR+     +   M +N   P+  T + +  G    G H  A
Sbjct: 377 PNTVTFNTLIGRLCDCGRVGRALNVFHGMRRNGCHPNDRTYNELLHGLFREGNHKDA 433



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/257 (23%), Positives = 116/257 (45%), Gaps = 18/257 (7%)

Query: 415 IKIFAKMRQK-LRPDIRTYELLF-SLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNN 472
           + ++  MR+  + P++ TY LL  +L  N            +VD+A+++     +M+R  
Sbjct: 89  VPVYDNMRKAGVDPNVYTYNLLIRALCQN-----------DRVDAARKMLD---EMSRKG 134

Query: 473 IQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIF 532
                +S   ++  +   G + E   +  ++  P+   +YN V+H+L           + 
Sbjct: 135 CHPDEVSHGTIVSGMCKLGRVEEARGFLAET-VPV-QASYNAVVHALCGEFRMWEVFSVV 192

Query: 533 KQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDY 592
            +M   G+ PN  TY  ++D     R  + A A+++ MV  G  P  +T+TAL+K   + 
Sbjct: 193 NEMVQRGLQPNVVTYTTIVDAFCKARELRMACAILARMVSMGCTPNVLTFTALVKGFFED 252

Query: 593 GDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTC 652
           G   +AL++   +  EG     + YN +++  C  G +         M +N + P+ +T 
Sbjct: 253 GKVHDALSMWHWMVDEGWAPSTISYNVLIRGLCCIGDLKGALDFFNSMKRNALLPNATTY 312

Query: 653 HFVFSGYVNCGFHNSAM 669
             +  G+ N G  + AM
Sbjct: 313 STLVDGFSNAGDLDGAM 329



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 86/356 (24%), Positives = 148/356 (41%), Gaps = 24/356 (6%)

Query: 295 SFSDVIHA-CGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           S++ V+HA CG  +   +   ++ +M   GLQP+  TY   + A    R LR    +L  
Sbjct: 171 SYNAVVHALCGEFRMWEVF-SVVNEMVQRGLQPNVVTYTTIVDAFCKARELRMACAILAR 229

Query: 354 MQQNNLKPQDSTIATLS---VECSKALE-LDLAEALLDQISRCTNPKPFSAFLAACDTMD 409
           M      P   T   L     E  K  + L +   ++D+     +   ++  +     + 
Sbjct: 230 MVSMGCTPNVLTFTALVKGFFEDGKVHDALSMWHWMVDE-GWAPSTISYNVLIRGLCCIG 288

Query: 410 KPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
             + A+  F  M R  L P+  TY  L   F N  A   +G M            I  +M
Sbjct: 289 DLKGALDFFNSMKRNALLPNATTYSTLVDGFSN--AGDLDGAML-----------IWNEM 335

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQES 525
             +  + + +   N++  L  + M  +   LI        P  T T+NT++  L +    
Sbjct: 336 KSSGCKPNVVVYTNMIDVLCKKMMFDQAESLIDKMLMDNCPPNTVTFNTLIGRLCDCGRV 395

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
            RA+ +F  M+  G  PN  TYN ++         K A A+V  M+ +GF    +TY  +
Sbjct: 396 GRALNVFHGMRRNGCHPNDRTYNELLHGLFREGNHKDAFAMVIEMLNNGFELSLVTYNTV 455

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMH 641
           I  L        A+ LL  + ++GI  D   +N I+   C++G++ +   ++ QM+
Sbjct: 456 INCLCQMCMRKHAMLLLGRMMVQGIQPDAFTFNAIIHAYCKEGKVSIAACLLGQMN 511



 Score = 73.2 bits (178), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 111/569 (19%), Positives = 214/569 (37%), Gaps = 83/569 (14%)

Query: 86  GADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLI 145
           G   + H+L+   R      V+  +  M +  +  N   Y L+++ALC+   ++ A  ++
Sbjct: 68  GVRVYNHLLDALLRENMVGAVVPVYDNMRKAGVDPNVYTYNLLIRALCQNDRVDAARKML 127

Query: 146 YFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVW 205
             +  R G +P    + + +    KL  +  A   L          N V +    +  +W
Sbjct: 128 DEM-SRKGCHPDEVSHGTIVSGMCKLGRVEEARGFLAETVPVQASYNAVVHALCGEFRMW 186

Query: 206 QKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYIN 265
           +   S V+E+ +   +    ++ +    V +F + R+L+ A   L  MV++         
Sbjct: 187 EV-FSVVNEMVQ---RGLQPNVVTYTTIVDAFCKARELRMACAILARMVSMG-------- 234

Query: 266 RTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQ 325
                             N L    +++  F D     G+  +   A  +   M   G  
Sbjct: 235 ---------------CTPNVLTFTALVKGFFED-----GKVHD---ALSMWHWMVDEGWA 271

Query: 326 PSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEAL 385
           PS+ +Y+  IR +     L+  ++    M++N L P  +T +TL    S A +LD A  +
Sbjct: 272 PSTISYNVLIRGLCCIGDLKGALDFFNSMKRNALLPNATTYSTLVDGFSNAGDLDGAMLI 331

Query: 386 LDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAP 445
            +++             + C                    +P++  Y  +  +       
Sbjct: 332 WNEMKS-----------SGC--------------------KPNVVVYTNMIDVLC----- 355

Query: 446 YEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKT 505
             +  MF Q +S   I+ + MD    N   + ++   L+  L   G +   +  F   + 
Sbjct: 356 --KKMMFDQAESL--IDKMLMD----NCPPNTVTFNTLIGRLCDCGRVGRALNVFHGMRR 407

Query: 506 PLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKS 562
               P   TYN +LH L        A  +  +M   G   +  TYN +I+C   +   K 
Sbjct: 408 NGCHPNDRTYNELLHGLFREGNHKDAFAMVIEMLNNGFELSLVTYNTVINCLCQMCMRKH 467

Query: 563 ASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILK 622
           A  L+  M+  G  P   T+ A+I      G    A  LL  ++    P +V+ Y  ++ 
Sbjct: 468 AMLLLGRMMVQGIQPDAFTFNAIIHAYCKEGKVSIAACLLGQMNAVNCPRNVVAYTILIS 527

Query: 623 KACEKGRIDVIEFIIEQMHQNKVQPDPST 651
           + C +G++      + +M    + P+ +T
Sbjct: 528 ELCNQGKLSNAMVYLLKMLYEGICPNEAT 556


>gi|297607630|ref|NP_001060305.2| Os07g0621100 [Oryza sativa Japonica Group]
 gi|255677977|dbj|BAF22219.2| Os07g0621100 [Oryza sativa Japonica Group]
          Length = 734

 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 91/460 (19%), Positives = 199/460 (43%), Gaps = 58/460 (12%)

Query: 311 LAEQ---LMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIA 367
           LA+Q   L+  M+S G++    TY   IR +     +   +E++  M ++ ++P     +
Sbjct: 130 LADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYS 189

Query: 368 TL-SVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKM----R 422
           +L    C      D+ +  ++   +   P     +    D++ K  +A K    M    R
Sbjct: 190 SLLQGYCKSGRWEDVGKVFVEMSEKGIEPD-VVMYTGLIDSLCKVGKAKKAHGVMDMMVR 248

Query: 423 QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI--------------------N 462
           + L P++ TY +L      +N   +EG++   +   K++                    +
Sbjct: 249 RGLEPNVVTYNVL------INCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSD 302

Query: 463 AIEMDMA----------RNNIQHSHISMKNLLKALGAEGMIRELIQYFC---DSKTPLGT 509
            +EMD A          +N ++ + ++  ++++ L   G +R+  Q      ++   +  
Sbjct: 303 VLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNL 362

Query: 510 PTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSM 569
            TYN ++  L+   +  +AME+  +M + G+ P++ TY+I+I     +     A  L+S 
Sbjct: 363 VTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLST 422

Query: 570 MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
           M   G  P+   Y  L+  + + G  + A NL + +     P DV+ Y+T++  AC+ G 
Sbjct: 423 MRDRGIEPELFHYIPLLVAMCEQGMMERARNLFNEMD-NNFPLDVVAYSTMIHGACKAGD 481

Query: 630 IDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEE 689
           +   + +++ +    + PD  T   V + +   G   +A   L+ ++      +V+    
Sbjct: 482 LKTAKELLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAANGVLKQMTASGFLPDVAV--- 538

Query: 690 KRSDFEDLILAEDSEAE-SRILQFCEDS-NENLAFTAALL 727
               F+ LI    ++ E +++L+   +   +N+A  + ++
Sbjct: 539 ----FDSLIQGYSTKGEINKVLELIREMITKNIALDSKII 574



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 86/378 (22%), Positives = 165/378 (43%), Gaps = 26/378 (6%)

Query: 283 LNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQ---SLGLQPSSHTYDGFIRAIV 339
           L+ALP ++    S++ V+ A  R  +   A  L+  M        +P++ +Y   +RA+ 
Sbjct: 68  LDALPSVRD-AVSYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSYTVLMRALC 126

Query: 340 SDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT---NPK 396
           +DR     + +L+ M+   ++    T  TL      A E+D A  L+ ++       N  
Sbjct: 127 ADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVV 186

Query: 397 PFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQV 455
            +S+ L       + E   K+F +M +K + PD+  Y  L              +   +V
Sbjct: 187 VYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLI-------------DSLCKV 233

Query: 456 DSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELI---QYFCDSKTPLGTPTY 512
             AK+ + +   M R  ++ + ++   L+  +  EG ++E I   +   +        TY
Sbjct: 234 GKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTY 293

Query: 513 NTVLHSLVEAQESHRAMEIFKQMKTCG--IPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           NT++  L +  E   AM + ++M      + PN  T+N +I     I   + A  + +MM
Sbjct: 294 NTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMM 353

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
              G     +TY  LI  LL      +A+ L+D ++  G+  D   Y+ ++K  C+  ++
Sbjct: 354 EETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQV 413

Query: 631 DVIEFIIEQMHQNKVQPD 648
           D  E ++  M    ++P+
Sbjct: 414 DRAEDLLSTMRDRGIEPE 431



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 82/358 (22%), Positives = 156/358 (43%), Gaps = 36/358 (10%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           ++ +I +  +   +  A  +M  M   GL+P+  TY+  I  +  +  ++  + VLK M 
Sbjct: 223 YTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMS 282

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTN-PKP----FSAFLAACDTMDK 410
           +  + P   T  TL    S  LE+D A  LL+++ R  N  KP    F++ +     + +
Sbjct: 283 EKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGR 342

Query: 411 PERAIKIFAKMRQK-LRPDIRTYELLFS-------------LFGNVNAPYEEGNMFS--- 453
             +A ++ A M +     ++ TY LL               L   + +   E + F+   
Sbjct: 343 MRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSI 402

Query: 454 ---------QVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYF--CD 502
                    QVD A+ + +   D     I+        LL A+  +GM+      F   D
Sbjct: 403 LIKGFCKMWQVDRAEDLLSTMRD---RGIEPELFHYIPLLVAMCEQGMMERARNLFNEMD 459

Query: 503 SKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKS 562
           +  PL    Y+T++H   +A +   A E+ K +   G+ P+A TY+I+I+  +     ++
Sbjct: 460 NNFPLDVVAYSTMIHGACKAGDLKTAKELLKSIVDEGLTPDAVTYSIVINMFAKSGDMEA 519

Query: 563 ASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTI 620
           A+ ++  M   GF P    + +LI+     G+ ++ L L+  +  + I  D  + +T+
Sbjct: 520 ANGVLKQMTASGFLPDVAVFDSLIQGYSTKGEINKVLELIREMITKNIALDSKIISTL 577



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/176 (18%), Positives = 82/176 (46%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           +Y  ++ +L   + + +A+ + + M++ G+  +  TY  +I           A  L+  M
Sbjct: 117 SYTVLMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEM 176

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
              G  P  + Y++L++     G +++   +   +S +GI  DV++Y  ++   C+ G+ 
Sbjct: 177 CESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKA 236

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
                +++ M +  ++P+  T + + +     G    A+  L+ +S + +  +V T
Sbjct: 237 KKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVT 292



 Score = 43.5 bits (101), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 21/87 (24%), Positives = 44/87 (50%)

Query: 577 PQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFI 636
           P  ++YT L++ L      D+A+ LL  +   G+  DV+ Y T+++  C+   +D    +
Sbjct: 113 PNAVSYTVLMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVEL 172

Query: 637 IEQMHQNKVQPDPSTCHFVFSGYVNCG 663
           + +M ++ ++P+      +  GY   G
Sbjct: 173 MGEMCESGIEPNVVVYSSLLQGYCKSG 199


>gi|413952776|gb|AFW85425.1| chloroplast RNA splicing4 [Zea mays]
          Length = 1435

 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 78/361 (21%), Positives = 146/361 (40%), Gaps = 28/361 (7%)

Query: 299 VIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNN 358
           V+   GR +   +AE++ L+    G   +   ++  +          +  ++L  M    
Sbjct: 194 VLGVLGRARQDSIAEEVFLRFAGEG--ATVQVFNAMMGVYARSGRFDDARQLLDTMHDRG 251

Query: 359 LKPQDSTIATLSVECSKA--LELDLAEALLDQISRCTNPKP----FSAFLAACDTMDKPE 412
           + P   +  TL    SK+  L   +A  LL ++ R +  +P    ++  ++AC      E
Sbjct: 252 IDPDLVSFNTLINARSKSGCLAAGVALDLLFEV-RQSGLRPDVITYNTLISACSQSSNLE 310

Query: 413 RAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471
            A+ +F  M   + RPD+ TY  + S+ G      E   +F +             +   
Sbjct: 311 DAVTVFEDMIASECRPDLWTYNAMVSVHGRCGKAEEAERLFRE-------------LVEK 357

Query: 472 NIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP----TYNTVLHSLVEAQESHR 527
                 I+  +LL A   EG + + +++ C+     G      TYNT++H   +      
Sbjct: 358 GFMPDAITYNSLLYAFAKEGNV-DKVEHTCEQLVKAGFKKNEITYNTMIHMYGKMGRLDL 416

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A+ ++ +M+  G  P+A TY +MID    +     A  ++  M   G  P  + ++ALI 
Sbjct: 417 AVGLYDEMRAMGCTPDAVTYTVMIDSLGKMNRIAEAGKVLEDMTDAGLKPTLIAFSALIC 476

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
                G   +A N  D +   G+  D L Y  +L      G  + +  +  +M  +  +P
Sbjct: 477 AYAKGGRRADAENTFDCMIASGVKPDRLAYLVMLDVFARSGDTEKMLCLYRKMMNDNYRP 536

Query: 648 D 648
           D
Sbjct: 537 D 537



 Score = 60.5 bits (145), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 76/167 (45%), Gaps = 7/167 (4%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASA--LVS 568
           TYNT++ +  ++     A+ +F+ M      P+  TYN M+      RC K+  A  L  
Sbjct: 295 TYNTLISACSQSSNLEDAVTVFEDMIASECRPDLWTYNAMVSVHG--RCGKAEEAERLFR 352

Query: 569 MMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
            +V  GF P  +TY +L+      G+ D+  +  + +   G   + + YNT++    + G
Sbjct: 353 ELVEKGFMPDAITYNSLLYAFAKEGNVDKVEHTCEQLVKAGFKKNEITYNTMIHMYGKMG 412

Query: 629 RIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
           R+D+   + ++M      PD  T   +     + G  N   EA +VL
Sbjct: 413 RLDLAVGLYDEMRAMGCTPDAVTYTVMID---SLGKMNRIAEAGKVL 456



 Score = 52.8 bits (125), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/172 (22%), Positives = 72/172 (41%), Gaps = 3/172 (1%)

Query: 479 SMKNLLKALGAEGMIREL---IQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQM 535
           S+  +++AL  +G + EL   ++   D    +   T   +L +  +A +    M+I+  M
Sbjct: 817 SVNGMMRALIVDGRLDELYVVVEELQDMNFKISKSTVLLLLDAFAKAGDVFEVMKIYNGM 876

Query: 536 KTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDF 595
           K  G  PN   Y  MI        F+    +++ M   GF P      AL+ +    G+F
Sbjct: 877 KAAGYLPNMHLYRSMISLLCHHNRFRDVELMIAEMEGAGFKPDLAILNALLNMYTAAGNF 936

Query: 596 DEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
           D    +   +   G+  D   YNT++   C   R +    ++ +M +  + P
Sbjct: 937 DRTTQVYRSILEAGLEPDEDTYNTLIVMYCRSFRPEEGFTLLNEMGKRGLTP 988



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 53/261 (20%), Positives = 112/261 (42%), Gaps = 20/261 (7%)

Query: 313  EQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVE 372
            E ++ +M+  G +P     +  +    +        +V + + +  L+P + T  TL V 
Sbjct: 905  ELMIAEMEGAGFKPDLAILNALLNMYTAAGNFDRTTQVYRSILEAGLEPDEDTYNTLIVM 964

Query: 373  CSKALELDLAEALLDQIS-RCTNPK--PFSAFLAACDTMDKPERAIKIFAKMRQKLRPDI 429
              ++   +    LL+++  R   PK   + + LAA    +  E+A +IF +MR K     
Sbjct: 965  YCRSFRPEEGFTLLNEMGKRGLTPKLQSYKSLLAASAKAELREQADQIFEEMRSK----- 1019

Query: 430  RTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGA 489
             +Y+L  S++  +   Y      S+ ++   +      M  + I+ +  +M  L+ + G 
Sbjct: 1020 -SYQLNRSIYHMMMKIYRNAGNHSKAENLLAV------MKEDGIEPTIATMHILMTSYGT 1072

Query: 490  EGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAAT 546
             G  RE   ++     S   + T  Y+TV  + ++  + +       +MK  G+ P+   
Sbjct: 1073 AGQPREAENVLNNLKSSSLEVSTLPYSTVFDAYLKNGDYNHGTTKLLEMKRDGVEPDHQV 1132

Query: 547  YNIMIDCCSIIRCFKSASALV 567
            +   I   S+  C ++A A++
Sbjct: 1133 WTCFIRAASL--CEQTADAIL 1151



 Score = 45.4 bits (106), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 78/185 (42%), Gaps = 7/185 (3%)

Query: 483 LLKALGAEGMIREL--IQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGI 540
           +++A+G     R L   ++   S  P  +     VL  L  A++   A E+F  ++  G 
Sbjct: 161 VVRAVGESSWRRALDAFEWLARSSAP-ASRAVAVVLGVLGRARQDSIAEEVF--LRFAGE 217

Query: 541 PPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDE--A 598
                 +N M+   +    F  A  L+  M   G  P  +++  LI      G      A
Sbjct: 218 GATVQVFNAMMGVYARSGRFDDARQLLDTMHDRGIDPDLVSFNTLINARSKSGCLAAGVA 277

Query: 599 LNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
           L+LL  V   G+  DV+ YNT++    +   ++    + E M  ++ +PD  T + + S 
Sbjct: 278 LDLLFEVRQSGLRPDVITYNTLISACSQSSNLEDAVTVFEDMIASECRPDLWTYNAMVSV 337

Query: 659 YVNCG 663
           +  CG
Sbjct: 338 HGRCG 342



 Score = 44.3 bits (103), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 68/381 (17%), Positives = 140/381 (36%), Gaps = 43/381 (11%)

Query: 293  RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
            R  ++ +IHA   +     A  +   M   G  P+  + +G +RA++ D  L     V++
Sbjct: 780  RRIWNALIHAYAESGLYEKARAVFDNMIKTGPLPTVDSVNGMMRALIVDGRLDELYVVVE 839

Query: 353  IMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPE 412
             +Q  N K   ST+  L                              AF  A D  +   
Sbjct: 840  ELQDMNFKISKSTVLLL----------------------------LDAFAKAGDVFE--- 868

Query: 413  RAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471
              +KI+  M+     P++  Y  + SL  + N   +   M ++++ A      + D+A  
Sbjct: 869  -VMKIYNGMKAAGYLPNMHLYRSMISLLCHHNRFRDVELMIAEMEGA----GFKPDLAIL 923

Query: 472  NIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEI 531
            N      ++ N+  A G      ++ +   ++       TYNT++     +        +
Sbjct: 924  N------ALLNMYTAAGNFDRTTQVYRSILEAGLEPDEDTYNTLIVMYCRSFRPEEGFTL 977

Query: 532  FKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLD 591
              +M   G+ P   +Y  ++   +     + A  +   M    +      Y  ++KI  +
Sbjct: 978  LNEMGKRGLTPKLQSYKSLLAASAKAELREQADQIFEEMRSKSYQLNRSIYHMMMKIYRN 1037

Query: 592  YGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
             G+  +A NLL ++  +GI   +   + ++      G+    E ++  +  + ++     
Sbjct: 1038 AGNHSKAENLLAVMKEDGIEPTIATMHILMTSYGTAGQPREAENVLNNLKSSSLEVSTLP 1097

Query: 652  CHFVFSGYVNCGFHNSAMEAL 672
               VF  Y+  G +N     L
Sbjct: 1098 YSTVFDAYLKNGDYNHGTTKL 1118



 Score = 42.4 bits (98), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 38/177 (21%), Positives = 76/177 (42%), Gaps = 6/177 (3%)

Query: 513  NTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASA--LVSMM 570
            N +L+    A    R  ++++ +   G+ P+  TYN +I      R F+      L++ M
Sbjct: 924  NALLNMYTAAGNFDRTTQVYRSILEAGLEPDEDTYNTLI--VMYCRSFRPEEGFTLLNEM 981

Query: 571  VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
             + G  P+  +Y +L+         ++A  + + +  +    +  +Y+ ++K     G  
Sbjct: 982  GKRGLTPKLQSYKSLLAASAKAELREQADQIFEEMRSKSYQLNRSIYHMMMKIYRNAGNH 1041

Query: 631  DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTL 687
               E ++  M ++ ++P  +T H + + Y   G    A   L  L    L  EVSTL
Sbjct: 1042 SKAENLLAVMKEDGIEPTIATMHILMTSYGTAGQPREAENVLNNLKSSSL--EVSTL 1096



 Score = 42.4 bits (98), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 33/156 (21%), Positives = 67/156 (42%), Gaps = 4/156 (2%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
            +N ++     +     A ++   M   GI P+  ++N +I+  S   C  +  AL  + 
Sbjct: 223 VFNAMMGVYARSGRFDDARQLLDTMHDRGIDPDLVSFNTLINARSKSGCLAAGVALDLLF 282

Query: 571 -VR-DGFYPQTMTYTALIKILLDYGDFDEALNLL-DLVSLEGIPHDVLLYNTILKKACEK 627
            VR  G  P  +TY  LI       + ++A+ +  D+++ E  P D+  YN ++      
Sbjct: 283 EVRQSGLRPDVITYNTLISACSQSSNLEDAVTVFEDMIASECRP-DLWTYNAMVSVHGRC 341

Query: 628 GRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
           G+ +  E +  ++ +    PD  T + +   +   G
Sbjct: 342 GKAEEAERLFRELVEKGFMPDAITYNSLLYAFAKEG 377


>gi|147819144|emb|CAN78081.1| hypothetical protein VITISV_021300 [Vitis vinifera]
          Length = 778

 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 85/433 (19%), Positives = 174/433 (40%), Gaps = 64/433 (14%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ ++ A  +    G A  L++ M+S GL P+ +TY+  +        L+    V+++M
Sbjct: 245 TYNTILDALCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELM 304

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT---NPKPFSAFLAACDTMDKP 411
            QNNL P   T   L         ++ A  L D++       +   ++  +  C    K 
Sbjct: 305 TQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKI 364

Query: 412 ERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSA------------ 458
             A K+  +M +K ++P+  T+ ++   +       +  N  ++++ +            
Sbjct: 365 SEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTL 424

Query: 459 -----KRINAIE----MD-MARNNIQHSHISMKNLLKALGAEGMIRE------------- 495
                K  N  E    MD M R N++   +++  +L+ L  E  + E             
Sbjct: 425 INGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGY 484

Query: 496 ----------LIQYFCDSKTPLG---------------TPTYNTVLHSLVEAQESHRAME 530
                     ++ YF D                     T TYN ++  L +  ++ +A+ 
Sbjct: 485 FIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAIS 544

Query: 531 IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590
              ++   G+ P+  TYN ++         + A    + MV + F P   T   L++ L 
Sbjct: 545 KLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLC 604

Query: 591 DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650
             G  ++AL L +    +G   D + YNT++   C++GR+D    ++ +M + ++ PD  
Sbjct: 605 MEGMLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEKELGPDHY 664

Query: 651 TCHFVFSGYVNCG 663
           T + + +   + G
Sbjct: 665 TYNAIITALTDSG 677



 Score = 80.9 bits (198), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 132/288 (45%), Gaps = 20/288 (6%)

Query: 389 ISRCTNPKP--FSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAP 445
           I R T+P        + A     +P  A +IF KM++ +LRP++ T   L +    V  P
Sbjct: 127 ILRLTSPSKALLDTAIGAYVQSGQPHHAFQIFKKMKRLRLRPNLLTCNTLLNSL--VRYP 184

Query: 446 YEEGNMFSQVDSAKRINAIEMDMARN----NIQHSHISMKNLLKALGAEGMIRELIQYFC 501
                 FS+       +AI++ +  N    NI      ++N  K   A   +  + +Y C
Sbjct: 185 SSHSVSFSR---EAFNDAIKLGIVPNVNTFNIVIYGYCLENKFK--DAVEFLNVMGKYNC 239

Query: 502 DSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFK 561
                    TYNT+L +L +      A ++   MK+ G+ PN  TYNI++     +   K
Sbjct: 240 SPDNV----TYNTILDALCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLK 295

Query: 562 SASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLD-LVSLEGIPHDVLLYNTI 620
            A+ ++ +M ++   P   TY  LI  L + G  +EA  L D + +L+ +P DV+ YNT+
Sbjct: 296 EAANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLP-DVVSYNTL 354

Query: 621 LKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSA 668
           +    E  +I     ++E+M +  V+P+  T + +   Y   G  + A
Sbjct: 355 INGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDA 402



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 109/512 (21%), Positives = 207/512 (40%), Gaps = 31/512 (6%)

Query: 151 RYGIYPILPVYNSFL-GACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNL 209
           + GI P +  +N  + G C + +    A   L++M       + VTY  +L     +  L
Sbjct: 201 KLGIVPNVNTFNIVIYGYCLE-NKFKDAVEFLNVMGKYNCSPDNVTYNTILDALCKKGRL 259

Query: 210 SAVHEIWEDYIKHYSL--SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYI-NR 266
               ++  D +K   L  +  +    V+ + ++  LK A   ++ M    ++  ++  N 
Sbjct: 260 GDARDLLMD-MKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNM 318

Query: 267 TSEGRLRSSRLDIPIPL-NALPVMKVLR--WSFSDVIHACGRTQNSGLAEQLMLQMQSLG 323
              G     R++    L + +  +K+L    S++ +I+ C        A +L+ +M   G
Sbjct: 319 LINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKG 378

Query: 324 LQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAE 383
           ++P++ T++  ++    +  + +    +  M+++   P   T  TL     KA  +  A 
Sbjct: 379 VKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAF 438

Query: 384 ALLDQISRCT---NPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFG 440
             +D++ R     +    +  L       K E A K+ +  R+      R Y +    +G
Sbjct: 439 RTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARK------RGYFIDEVSYG 492

Query: 441 NVNAPY-EEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL----GAEGMIRE 495
            +   Y ++GN    VD A ++     +M    I  S ++   ++  L      E  I +
Sbjct: 493 TLIVGYFKDGN----VDRALKLWD---EMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISK 545

Query: 496 LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCS 555
           L +       P  T TYNT+LH      +  +A +   +M      P+  T NI++    
Sbjct: 546 LNELLESGLLPDET-TYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLC 604

Query: 556 IIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVL 615
           +    + A  L +  V  G    T+TY  LI  L   G  D+A NLL  +  + +  D  
Sbjct: 605 MEGMLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEKELGPDHY 664

Query: 616 LYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
            YN I+    + GRI   E  + +M +    P
Sbjct: 665 TYNAIITALTDSGRIREAEEFMSKMLEKGXLP 696



 Score = 67.0 bits (162), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 85/179 (47%), Gaps = 7/179 (3%)

Query: 513 NTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSM--- 569
           +T + + V++ + H A +IFK+MK   + PN  T N +++  S++R   S S   S    
Sbjct: 139 DTAIGAYVQSGQPHHAFQIFKKMKRLRLRPNLLTCNTLLN--SLVRYPSSHSVSFSREAF 196

Query: 570 --MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEK 627
              ++ G  P   T+  +I        F +A+  L+++       D + YNTIL   C+K
Sbjct: 197 NDAIKLGIVPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTILDALCKK 256

Query: 628 GRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           GR+     ++  M    + P+ +T + +  GY   G+   A   +++++   L  +V T
Sbjct: 257 GRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWT 315



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 76/167 (45%), Gaps = 2/167 (1%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC-CSIIRCFKSASALVSM 569
           T+N V++      +   A+E    M      P+  TYN ++D  C   R   +   L+ M
Sbjct: 210 TFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTILDALCKKGRLGDARDLLMDM 269

Query: 570 MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
             R G  P   TY  L+      G   EA N+++L++   +  DV  YN ++   C +GR
Sbjct: 270 KSR-GLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGR 328

Query: 630 IDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
           I+    + ++M   K+ PD  + + + +G +     + A + L+ +S
Sbjct: 329 IEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMS 375



 Score = 42.7 bits (99), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 118/580 (20%), Positives = 222/580 (38%), Gaps = 70/580 (12%)

Query: 30  VANKLELSRTLTTTMGLNEESISKATQMQIVDALCR-GERSRASHLLLNLGHAHHSLGAD 88
           + NK + +      MG    S    T   I+DALC+ G    A  LL+++  +   L   
Sbjct: 220 LENKFKDAVEFLNVMGKYNCSPDNVTYNTILDALCKKGRLGDARDLLMDM-KSRGLLPNR 278

Query: 89  DFFHIL--NYCARS--PDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNL 144
           + ++IL   YC      +   V+E   +M +  +  +   Y +++  LC  G +EEA  L
Sbjct: 279 NTYNILVYGYCKMGWLKEAANVIE---LMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKL 335

Query: 145 IYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAV 204
              + E   + P +  YN+ +  C +   +  A   L+ M  + V  N VT+  ++K   
Sbjct: 336 RDEM-ENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYC 394

Query: 205 WQKNL-SAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAM-MGKL 262
            +  +  A + I +     +S    +    +  + +  ++  A+ T+  M    M M  +
Sbjct: 395 KEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSV 454

Query: 263 YINRTSEGRLRSSRLDIPIPLNALPVMK---VLRWSFSDVIHACGRTQNSGLAEQLMLQM 319
            +N       R  +L+    L +    +   +   S+  +I    +  N   A +L  +M
Sbjct: 455 TLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEM 514

Query: 320 QSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIAT-LSVECSKALE 378
           +   + PS+ TY+  I  +         +  L  + ++ L P ++T  T L   C    E
Sbjct: 515 KEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCR---E 571

Query: 379 LDLAEALLDQISRCTNPKPFSAFLAACDTMDKP-------ERAIKIFAKMRQKLRP-DIR 430
            D+ +A   Q         F   +  C+ + +        E+A+K+F     K +  D  
Sbjct: 572 GDVEKAF--QFHNKMVENSFKPDVFTCNILLRGLCMEGMLEKALKLFNTWVSKGKAIDTV 629

Query: 431 TYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAE 490
           TY  L      + +  +EG    ++D A  + +   +M    +   H +   ++ AL   
Sbjct: 630 TYNTL------ITSLCKEG----RLDDAFNLLS---EMEEKELGPDHYTYNAIITALTDS 676

Query: 491 GMIRELIQYFCDSKTPLGTP--------------------------TYNTVLHSLVEAQE 524
           G IRE  ++          P                           Y+  +  L    +
Sbjct: 677 GRIREAEEFMSKMLEKGXLPXQVLQLDXNETVVTSETSEESDSSSVAYSEWIKELCTEGK 736

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSAS 564
              AM IF + K  GI  + +TY  ++D   +I+  KS S
Sbjct: 737 YKDAMRIFGESKQKGITVDKSTYINLMD--GLIKRRKSIS 774


>gi|359490016|ref|XP_002275236.2| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
           chloroplastic-like [Vitis vinifera]
          Length = 1442

 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 70/284 (24%), Positives = 127/284 (44%), Gaps = 26/284 (9%)

Query: 349 EVLKIMQQNNLKPQDSTIATL--SVECSKALELDLAEALLDQISRCTNPKP----FSAFL 402
           E+L +M+    +P   +  TL  +   S  +  +LA  LL+++ R +  +P    ++  +
Sbjct: 243 ELLDLMRSRGCEPDLVSFNTLINARLKSGTMVTNLAIELLNEVRR-SGIQPDIITYNTLI 301

Query: 403 AACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI 461
           +AC      E A+K++  M   + +PD+ TY  + S++G      E G +F  ++S    
Sbjct: 302 SACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMISVYGRCGMSREAGRLFKDLES---- 357

Query: 462 NAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP----TYNTVLH 517
                           ++  +LL A   EG + + ++  C+    +G      TYNT++H
Sbjct: 358 ---------KGFLPDAVTYNSLLYAFAREGNVDK-VKEICEDMVKMGFGKDEMTYNTIIH 407

Query: 518 SLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYP 577
              +  +   A +++  MK  G  P+A TY ++ID        K A+ ++S M+     P
Sbjct: 408 MYGKRGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSEMLNARVKP 467

Query: 578 QTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTIL 621
              T++ALI      G   EA    D +   GI  D L Y+ +L
Sbjct: 468 TLRTFSALICGYAKAGKRVEAEETFDCMLRSGIKPDHLAYSVML 511



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/254 (23%), Positives = 102/254 (40%), Gaps = 18/254 (7%)

Query: 427 PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM--DMARNNIQHSHISMKNLL 484
           PD+ ++  L      +NA  + G M + +       AIE+  ++ R+ IQ   I+   L+
Sbjct: 255 PDLVSFNTL------INARLKSGTMVTNL-------AIELLNEVRRSGIQPDIITYNTLI 301

Query: 485 KALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIP 541
            A   E  + E ++ + D       P   TYN ++        S  A  +FK +++ G  
Sbjct: 302 SACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMISVYGRCGMSREAGRLFKDLESKGFL 361

Query: 542 PNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNL 601
           P+A TYN ++   +          +   MV+ GF    MTY  +I +    G  D A  L
Sbjct: 362 PDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIHMYGKRGQHDLAFQL 421

Query: 602 LDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVN 661
              + L G   D + Y  ++    +   I     ++ +M   +V+P   T   +  GY  
Sbjct: 422 YSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSEMLNARVKPTLRTFSALICGYAK 481

Query: 662 CGFHNSAMEALQVL 675
            G    A E    +
Sbjct: 482 AGKRVEAEETFDCM 495



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/263 (21%), Positives = 113/263 (42%), Gaps = 15/263 (5%)

Query: 412 ERAIKIFA--KMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
           +RA++++    +R    P+ R    + S+ G  N       +F++ ++A           
Sbjct: 169 QRALEVYEWLNLRHWYSPNARMLATILSVLGKANQEALAVEIFARAEAAS---------- 218

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQE--SHR 527
             N    + +M  +    G    ++EL+             ++NT++++ +++    ++ 
Sbjct: 219 -GNTVQVYNAMMGVYARTGRFTKVQELLDLMRSRGCEPDLVSFNTLINARLKSGTMVTNL 277

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A+E+  +++  GI P+  TYN +I  CS     + A  + + MV     P   TY A+I 
Sbjct: 278 AIELLNEVRRSGIQPDIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMIS 337

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
           +    G   EA  L   +  +G   D + YN++L     +G +D ++ I E M +     
Sbjct: 338 VYGRCGMSREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGK 397

Query: 648 DPSTCHFVFSGYVNCGFHNSAME 670
           D  T + +   Y   G H+ A +
Sbjct: 398 DEMTYNTIIHMYGKRGQHDLAFQ 420



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 133/640 (20%), Positives = 250/640 (39%), Gaps = 45/640 (7%)

Query: 67  ERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYL 126
           +R+   +  LNL H  +S  A     IL+   ++      +E +   E    G   + Y 
Sbjct: 169 QRALEVYEWLNLRH-WYSPNARMLATILSVLGKANQEALAVEIFARAEAAS-GNTVQVYN 226

Query: 127 LMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDS 186
            MM    + G   +   L+  +  R G  P L  +N+ + A  K  +MV  NL ++L++ 
Sbjct: 227 AMMGVYARTGRFTKVQELLDLMRSR-GCEPDLVSFNTLINARLKSGTMV-TNLAIELLNE 284

Query: 187 -RMVG--KNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHY-SLSIFSLRKFVWSFTRLRD 242
            R  G   + +TY  L+     + NL    +++ D + H     +++    +  + R   
Sbjct: 285 VRRSGIQPDIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMISVYGRCGM 344

Query: 243 LKSAYETLQHMVALAMM------GKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSF 296
            + A    + + +   +        L      EG +   + +I   +  +   K    ++
Sbjct: 345 SREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVK-EICEDMVKMGFGKD-EMTY 402

Query: 297 SDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQ 356
           + +IH  G+     LA QL   M+  G  P + TY   I ++     ++   EV+  M  
Sbjct: 403 NTIIHMYGKRGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSEMLN 462

Query: 357 NNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDKPE 412
             +KP   T + L    +KA +   AE   D + R +  KP    +S  L      ++  
Sbjct: 463 ARVKPTLRTFSALICGYAKAGKRVEAEETFDCMLR-SGIKPDHLAYSVMLDILLRFNESG 521

Query: 413 RAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAP----------YEEGNMFSQVDSAKRI 461
           +A+K++ +M     +PD   YE++  + G  N             E   M SQV  +  +
Sbjct: 522 KAMKLYQEMVLHSFKPDHALYEVMLRVLGKENREEDVHKVVKDMEELCGMNSQVICSILV 581

Query: 462 NAIEMDMARNNI-----QHSHISMKNLLKALGAEGM------IRELIQYFCDSKTPLGTP 510
                D A N +     Q   +  +NLL  LG+ G        REL+ +  +  +     
Sbjct: 582 KGECFDHAANMLRLAISQGCELDRENLLSILGSYGSSGRHLEARELLDFLREHSSGSHQL 641

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAAT-YNIMIDCCSIIRCFKSASALVSM 569
               ++  L +A +   A+  + + +  G+   + T Y  ++ CC     F  AS + S 
Sbjct: 642 INEALIIMLCKAHQLGDALREYGKARDFGLFCGSFTMYESLLLCCEENELFAEASQIFSD 701

Query: 570 MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
           M   G  P    Y +++      G  + A  L+D    +G+  D +  +T + +A  K +
Sbjct: 702 MRFYGVEPSDHLYRSMVVTYCKMGFPETAHYLIDQAEEKGLLFDDVSIHTGVIEAYGKLK 761

Query: 630 I-DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSA 668
           +    E ++  + Q     D    + +   Y   G +  A
Sbjct: 762 LWQKAESLVGSLRQKCTMVDRKVWNALIHAYAASGCYERA 801



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 87/204 (42%), Gaps = 3/204 (1%)

Query: 459  KRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIREL---IQYFCDSKTPLGTPTYNTV 515
            +R  AI   M R+    +  S+  L++AL  +G + EL   IQ   D    +   +   +
Sbjct: 799  ERARAIFNTMMRDGPSPTVDSVNGLMQALIVDGRLDELYVVIQELQDMGFKISKSSITLM 858

Query: 516  LHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGF 575
            L +   A       +I++ MK  G  P    Y IMI   +  +  +   A+VS M    F
Sbjct: 859  LDAFAHAGNIFEVKKIYQGMKAAGYFPTMHLYRIMIGLLAKGKRVRDVEAMVSEMEVARF 918

Query: 576  YPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEF 635
             P    + +++K+    GDF +   +  L+   G+  D   YNT++   C   R +    
Sbjct: 919  KPDLSIWNSVLKLYTGIGDFKKTGQVYQLIQEAGLKPDEDTYNTLILMYCRDRRPEEGLS 978

Query: 636  IIEQMHQNKVQPDPSTCHFVFSGY 659
            ++ +M +  ++P   T   + S +
Sbjct: 979  LMHEMRRVGLEPKLDTYKSLISAF 1002



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 70/166 (42%), Gaps = 3/166 (1%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TYNT++ +         A++++  M      P+  TYN MI         + A  L   +
Sbjct: 296 TYNTLISACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMISVYGRCGMSREAGRLFKDL 355

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
              GF P  +TY +L+      G+ D+   + + +   G   D + YNTI+    ++G+ 
Sbjct: 356 ESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIHMYGKRGQH 415

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
           D+   +   M  +   PD  T   +     + G  N   EA +V+S
Sbjct: 416 DLAFQLYSDMKLSGRSPDAVTYTVLID---SLGKANMIKEAAEVMS 458



 Score = 47.4 bits (111), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 65/380 (17%), Positives = 152/380 (40%), Gaps = 30/380 (7%)

Query: 291  VLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEV 350
            V R  ++ +IHA   +     A  +   M   G  P+  + +G ++A++ D  L     V
Sbjct: 780  VDRKVWNALIHAYAASGCYERARAIFNTMMRDGPSPTVDSVNGLMQALIVDGRLDELYVV 839

Query: 351  LKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDK 410
            ++ +Q    K   S+I  +    + A  +   + +   +           +      + K
Sbjct: 840  IQELQDMGFKISKSSITLMLDAFAHAGNIFEVKKIYQGMKAAGYFPTMHLYRIMIGLLAK 899

Query: 411  PERAIKIFAKMRQ----KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSA------KR 460
             +R   + A + +    + +PD+  +  +  L+  +    + G ++  +  A        
Sbjct: 900  GKRVRDVEAMVSEMEVARFKPDLSIWNSVLKLYTGIGDFKKTGQVYQLIQEAGLKPDEDT 959

Query: 461  INAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLV 520
             N + +   R+      +S+ + ++ +G E  +                 TY +++ +  
Sbjct: 960  YNTLILMYCRDRRPEEGLSLMHEMRRVGLEPKL----------------DTYKSLISAFG 1003

Query: 521  EAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTM 580
            + Q   +A E+F+ + +     + + Y+IM+           A  L+ +M   G  P   
Sbjct: 1004 KLQMVEQAEELFEGLLSKECKLDRSFYHIMMKMFRNSGNHSKAEKLLGVMKEAGVEPTIA 1063

Query: 581  TYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQM 640
            T   L+      G  +EA  +LD + +EG+P   L Y++++    + G  +V    + +M
Sbjct: 1064 TMHLLMVSYSGSGQPEEAEKVLDNLKVEGLPLSTLPYSSVIDAYLKNGDHNVAIQKLMEM 1123

Query: 641  HQNKVQPDPSTCHFVFSGYV 660
             ++ ++PD    H +++ +V
Sbjct: 1124 KKDGLEPD----HRIWTCFV 1139



 Score = 47.0 bits (110), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 93/471 (19%), Positives = 186/471 (39%), Gaps = 59/471 (12%)

Query: 152  YGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVT-YTELL----KLAVWQ 206
            YG+ P   +Y S +    K+     A+  +D  + + +  ++V+ +T ++    KL +WQ
Sbjct: 705  YGVEPSDHLYRSMVVTYCKMGFPETAHYLIDQAEEKGLLFDDVSIHTGVIEAYGKLKLWQ 764

Query: 207  KNLSAV-----------HEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255
            K  S V            ++W   I  Y+ S    R      T +RD  S   T+  +  
Sbjct: 765  KAESLVGSLRQKCTMVDRKVWNALIHAYAASGCYERARAIFNTMMRDGPSP--TVDSVNG 822

Query: 256  LAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVM--KVLRWSFSDVIHACGRTQNSGLAE 313
            L  M  L ++    GRL     ++ + +  L  M  K+ + S + ++ A     N    +
Sbjct: 823  L--MQALIVD----GRLD----ELYVVIQELQDMGFKISKSSITLMLDAFAHAGNIFEVK 872

Query: 314  QLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDS---TIATLS 370
            ++   M++ G  P+ H Y   I  +   + +R+   ++  M+    KP  S   ++  L 
Sbjct: 873  KIYQGMKAAGYFPTMHLYRIMIGLLAKGKRVRDVEAMVSEMEVARFKPDLSIWNSVLKLY 932

Query: 371  VECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDI 429
                   +      L+ +     +   ++  +       +PE  + +  +MR+  L P +
Sbjct: 933  TGIGDFKKTGQVYQLIQEAGLKPDEDTYNTLILMYCRDRRPEEGLSLMHEMRRVGLEPKL 992

Query: 430  RTYELLFSLFGNVNAPYEEGNMFSQVDSA-----KRINAIEMDMARNNIQHSHI-SMKNL 483
             TY+ L S FG +    +   +F  + S      +    I M M RN+  HS    +  +
Sbjct: 993  DTYKSLISAFGKLQMVEQAEELFEGLLSKECKLDRSFYHIMMKMFRNSGNHSKAEKLLGV 1052

Query: 484  LKALGAEGMIRE----LIQYFCDSKT---------------PLGTPTYNTVLHSLVEAQE 524
            +K  G E  I      ++ Y    +                PL T  Y++V+ + ++  +
Sbjct: 1053 MKEAGVEPTIATMHLLMVSYSGSGQPEEAEKVLDNLKVEGLPLSTLPYSSVIDAYLKNGD 1112

Query: 525  SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGF 575
             + A++   +MK  G+ P+   +   +   S+ +    A  L+  +   GF
Sbjct: 1113 HNVAIQKLMEMKKDGLEPDHRIWTCFVRAASLSQHTSEAIVLLKALRDTGF 1163


>gi|357139998|ref|XP_003571561.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 807

 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 96/421 (22%), Positives = 155/421 (36%), Gaps = 57/421 (13%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           +S V+H   +    G A  L  +M   G+ P+  TY+  I A+   R +     +L+ M 
Sbjct: 214 YSTVVHGLFKEGKVGEACDLFHEMTQQGVPPNVVTYNSVIHALCKARAVDKAQGILRQMV 273

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQI-SRCTNPKPF--SAFLAACDTMDKPE 412
            N ++P + T  TL    S   +   A  +  ++ SR   P     S F+A      + E
Sbjct: 274 GNGVQPDNVTYNTLIHGYSTLGQWKQAVRMFKEMTSRGVIPNTVTCSTFVAFLCKHGRIE 333

Query: 413 RAIKIFAKMRQKL-RPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471
            A + F  M  K  + +I +Y  L   +       +  N+F+              M R+
Sbjct: 334 EAREFFDSMLAKGHKLNIISYSTLLHGYATAGCLVDMSNLFNL-------------MVRD 380

Query: 472 NIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRA 528
            I  +      L+      GM+RE +  F D +     P   TY  V+H+         A
Sbjct: 381 GIVPNQHVFNILVNGYAKCGMVREAMFIFEDMQKRGLNPDVLTYLAVIHAFCRMGSMDDA 440

Query: 529 MEIFKQMKTCGIPPNAATYNIMID------------------------------------ 552
           M+ F  M   G+ PN A Y  +I                                     
Sbjct: 441 MDKFNHMIDKGVEPNFAVYQCLIQGFCTHGDLVKAEELVYEIRNKGLGPCILSFASLINH 500

Query: 553 CCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPH 612
            C   R F+ A  +  M++R G       +T+LI      G   EA  + D +   GI  
Sbjct: 501 LCKEGRVFE-AQRIFDMIIRTGEKADVNIFTSLIDGYCLIGKMSEAFRVHDAMVSVGIEP 559

Query: 613 DVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEAL 672
           D++ Y T++   C+ GRID    +  ++    V+P   T   +  G  + G   +A E  
Sbjct: 560 DIVTYGTLVNGCCKNGRIDDGLILFRELLHKGVKPTTFTYGIILDGLFHAGRTAAAKEMF 619

Query: 673 Q 673
           Q
Sbjct: 620 Q 620



 Score = 80.9 bits (198), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 139/343 (40%), Gaps = 38/343 (11%)

Query: 381 LAEALLDQISRCTNPK-------PFSAFLAACDTMDKPERAIKIFA-KMRQKLRPDI--- 429
           LA AL +++S  T P+        +S  +  C    + + A   F   +RQ ++ D+   
Sbjct: 82  LAVALFNRMSTGTGPRVALPTVYTYSILIDCCCRARRLDLAFAFFGCLLRQGMKADVIVV 141

Query: 430 -----------RTYELLFSLF------GNVNAPYEEGNMFSQVDSAKRINAIEMDMARNN 472
                      RT E +  LF      G V        +   V    R +   +D+ R  
Sbjct: 142 SSLLRGLCDAKRTDEAVDVLFHRMPELGCVPDAISYSTVLKSVCDDGR-SQWALDILRMA 200

Query: 473 IQHSH------ISMKNLLKALGAEGMIRELIQYF---CDSKTPLGTPTYNTVLHSLVEAQ 523
           ++         +    ++  L  EG + E    F        P    TYN+V+H+L +A+
Sbjct: 201 VKQGGGCPCNVVVYSTVVHGLFKEGKVGEACDLFHEMTQQGVPPNVVTYNSVIHALCKAR 260

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
              +A  I +QM   G+ P+  TYN +I   S +  +K A  +   M   G  P T+T +
Sbjct: 261 AVDKAQGILRQMVGNGVQPDNVTYNTLIHGYSTLGQWKQAVRMFKEMTSRGVIPNTVTCS 320

Query: 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
             +  L  +G  +EA    D +  +G   +++ Y+T+L      G +  +  +   M ++
Sbjct: 321 TFVAFLCKHGRIEEAREFFDSMLAKGHKLNIISYSTLLHGYATAGCLVDMSNLFNLMVRD 380

Query: 644 KVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
            + P+    + + +GY  CG    AM   + +  R L  +V T
Sbjct: 381 GIVPNQHVFNILVNGYAKCGMVREAMFIFEDMQKRGLNPDVLT 423



 Score = 72.4 bits (176), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 118/576 (20%), Positives = 222/576 (38%), Gaps = 65/576 (11%)

Query: 105 FVMETWRMMEEKEIGL--NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYN 162
           + ++  RM  ++  G   N   Y  ++  L K G + EA +L + + ++ G+ P +  YN
Sbjct: 192 WALDILRMAVKQGGGCPCNVVVYSTVVHGLFKEGKVGEACDLFHEMTQQ-GVPPNVVTYN 250

Query: 163 SFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELL----KLAVWQKNLSAVHEIWED 218
           S + A  K  ++  A   L  M    V  + VTY  L+     L  W++ +    E+   
Sbjct: 251 SVIHALCKARAVDKAQGILRQMVGNGVQPDNVTYNTLIHGYSTLGQWKQAVRMFKEMTSR 310

Query: 219 YIKHYSLSIFSLRKFVWSFTRLRDLKS---------------AYETLQHMVALAM----M 259
            +   +++  +   F+    R+ + +                +Y TL H  A A     M
Sbjct: 311 GVIPNTVTCSTFVAFLCKHGRIEEAREFFDSMLAKGHKLNIISYSTLLHGYATAGCLVDM 370

Query: 260 GKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLR---WSFSD---------------VIH 301
             L+     +G + +  +   I +N      ++R   + F D               VIH
Sbjct: 371 SNLFNLMVRDGIVPNQHV-FNILVNGYAKCGMVREAMFIFEDMQKRGLNPDVLTYLAVIH 429

Query: 302 ACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKP 361
           A  R  +   A      M   G++P+   Y   I+   +   L    E++  ++   L P
Sbjct: 430 AFCRMGSMDDAMDKFNHMIDKGVEPNFAVYQCLIQGFCTHGDLVKAEELVYEIRNKGLGP 489

Query: 362 QDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDT---MDKPERAIKIF 418
              + A+L     K   +  A+ + D I R       + F +  D    + K   A ++ 
Sbjct: 490 CILSFASLINHLCKEGRVFEAQRIFDMIIRTGEKADVNIFTSLIDGYCLIGKMSEAFRVH 549

Query: 419 -AKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSH 477
            A +   + PDI TY  L      VN   + G    ++D       +  ++    ++ + 
Sbjct: 550 DAMVSVGIEPDIVTYGTL------VNGCCKNG----RIDDGL---ILFRELLHKGVKPTT 596

Query: 478 ISMKNLLKAL---GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQ 534
            +   +L  L   G     +E+ Q   +S   +  PTY+ +L  L     +  A+ +F++
Sbjct: 597 FTYGIILDGLFHAGRTAAAKEMFQEMIESGIAVTIPTYSILLTGLCRNNCTEEAITVFQK 656

Query: 535 MKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGD 594
           +    +  +    NIMI      R  + A  L + +   G  P   TYT +++ L+  G 
Sbjct: 657 LCAMNVKFDIVILNIMISKMFKARRREEAEGLFASIPDYGLVPTVQTYTIMMENLIKEGS 716

Query: 595 FDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
            +EA  +  ++   G+       N I++   EKG I
Sbjct: 717 VEEAEGVFSVMLKSGLSPTSHFINVIVRTLLEKGEI 752



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 95/203 (46%), Gaps = 18/203 (8%)

Query: 513 NTVLHSLVEAQESHRAMEI-FKQMKTCGIPPNAATYN-IMIDCCSIIRCFKSASALVSMM 570
           +++L  L +A+ +  A+++ F +M   G  P+A +Y+ ++   C   R   +   L   +
Sbjct: 142 SSLLRGLCDAKRTDEAVDVLFHRMPELGCVPDAISYSTVLKSVCDDGRSQWALDILRMAV 201

Query: 571 VRDGFYP-QTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
            + G  P   + Y+ ++  L   G   EA +L   ++ +G+P +V+ YN+++   C+   
Sbjct: 202 KQGGGCPCNVVVYSTVVHGLFKEGKVGEACDLFHEMTQQGVPPNVVTYNSVIHALCKARA 261

Query: 630 IDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMR----------- 678
           +D  + I+ QM  N VQPD  T + +  GY   G    A+   + ++ R           
Sbjct: 262 VDKAQGILRQMVGNGVQPDNVTYNTLIHGYSTLGQWKQAVRMFKEMTSRGVIPNTVTCST 321

Query: 679 ---MLCEEVSTLEEKRSDFEDLI 698
               LC+    +EE R  F+ ++
Sbjct: 322 FVAFLCKH-GRIEEAREFFDSML 343



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 81/392 (20%), Positives = 146/392 (37%), Gaps = 27/392 (6%)

Query: 282 PLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSD 341
           P  ALP +    +++S +I  C R +   LA      +   G++         +R +   
Sbjct: 96  PRVALPTV----YTYSILIDCCCRARRLDLAFAFFGCLLRQGMKADVIVVSSLLRGLCDA 151

Query: 342 RGLRNGMEVL-KIMQQNNLKPQDSTIAT-LSVECSKA---LELDLAEALLDQISRC-TNP 395
           +     ++VL   M +    P   + +T L   C        LD+    + Q   C  N 
Sbjct: 152 KRTDEAVDVLFHRMPELGCVPDAISYSTVLKSVCDDGRSQWALDILRMAVKQGGGCPCNV 211

Query: 396 KPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQ 454
             +S  +       K   A  +F +M Q+ + P++ TY  +        A          
Sbjct: 212 VVYSTVVHGLFKEGKVGEACDLFHEMTQQGVPPNVVTYNSVIHALCKARA---------- 261

Query: 455 VDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---T 511
           VD A+    I   M  N +Q  +++   L+      G  ++ ++ F +  +    P   T
Sbjct: 262 VDKAQ---GILRQMVGNGVQPDNVTYNTLIHGYSTLGQWKQAVRMFKEMTSRGVIPNTVT 318

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
            +T +  L +      A E F  M   G   N  +Y+ ++   +   C    S L ++MV
Sbjct: 319 CSTFVAFLCKHGRIEEAREFFDSMLAKGHKLNIISYSTLLHGYATAGCLVDMSNLFNLMV 378

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
           RDG  P    +  L+      G   EA+ + + +   G+  DVL Y  ++   C  G +D
Sbjct: 379 RDGIVPNQHVFNILVNGYAKCGMVREAMFIFEDMQKRGLNPDVLTYLAVIHAFCRMGSMD 438

Query: 632 VIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
                   M    V+P+ +    +  G+   G
Sbjct: 439 DAMDKFNHMIDKGVEPNFAVYQCLIQGFCTHG 470



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 80/418 (19%), Positives = 164/418 (39%), Gaps = 47/418 (11%)

Query: 303 CGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI-MQQNNLKP 361
           C   +     + L  +M  LG  P + +Y   ++++  D   +  +++L++ ++Q    P
Sbjct: 149 CDAKRTDEAVDVLFHRMPELGCVPDAISYSTVLKSVCDDGRSQWALDILRMAVKQGGGCP 208

Query: 362 QDSTIATLSVE-CSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAK 420
            +  + +  V    K  ++  A  L  ++++   P     + +    + K     K    
Sbjct: 209 CNVVVYSTVVHGLFKEGKVGEACDLFHEMTQQGVPPNVVTYNSVIHALCKARAVDKAQGI 268

Query: 421 MRQ----KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHS 476
           +RQ     ++PD  TY  L   +  +    +   MF ++ S            R  I ++
Sbjct: 269 LRQMVGNGVQPDNVTYNTLIHGYSTLGQWKQAVRMFKEMTS------------RGVIPNT 316

Query: 477 HISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP----TYNTVLHSLVEAQESHRAMEIF 532
            ++    +  L   G I E  ++F DS    G      +Y+T+LH    A        +F
Sbjct: 317 -VTCSTFVAFLCKHGRIEEAREFF-DSMLAKGHKLNIISYSTLLHGYATAGCLVDMSNLF 374

Query: 533 KQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDY 592
             M   GI PN   +NI+++  +     + A  +   M + G  P  +TY A+I      
Sbjct: 375 NLMVRDGIVPNQHVFNILVNGYAKCGMVREAMFIFEDMQKRGLNPDVLTYLAVIHAFCRM 434

Query: 593 GDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTC 652
           G  D+A++  + +  +G+  +  +Y  +++  C  G +   E ++ ++    + P    C
Sbjct: 435 GSMDDAMDKFNHMIDKGVEPNFAVYQCLIQGFCTHGDLVKAEELVYEIRNKGLGP----C 490

Query: 653 HFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDFEDLILAEDSEAESRIL 710
              F+  +N                  LC+E    E +R    D+I+    +A+  I 
Sbjct: 491 ILSFASLIN-----------------HLCKEGRVFEAQR--IFDMIIRTGEKADVNIF 529



 Score = 46.2 bits (108), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 82/414 (19%), Positives = 149/414 (35%), Gaps = 40/414 (9%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ VIHA  + +    A+ ++ QM   G+QP + TY+  I    +    +  + + K M
Sbjct: 248 TYNSVIHALCKARAVDKAQGILRQMVGNGVQPDNVTYNTLIHGYSTLGQWKQAVRMFKEM 307

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQI---SRCTNPKPFSAFLAACDTMDKP 411
               + P   T +T      K   ++ A    D +       N   +S  L    T    
Sbjct: 308 TSRGVIPNTVTCSTFVAFLCKHGRIEEAREFFDSMLAKGHKLNIISYSTLLHGYATAGCL 367

Query: 412 ERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMD-MA 469
                +F  M R  + P+   + +L + +       E   MF   D  KR   +  D + 
Sbjct: 368 VDMSNLFNLMVRDGIVPNQHVFNILVNGYAKCGMVREA--MFIFEDMQKR--GLNPDVLT 423

Query: 470 RNNIQHSHISMKNLLKAL---------GAE---GMIRELIQYFCD--------------S 503
              + H+   M ++  A+         G E    + + LIQ FC                
Sbjct: 424 YLAVIHAFCRMGSMDDAMDKFNHMIDKGVEPNFAVYQCLIQGFCTHGDLVKAEELVYEIR 483

Query: 504 KTPLGTP--TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFK 561
              LG    ++ ++++ L +      A  IF  +   G   +   +  +ID   +I    
Sbjct: 484 NKGLGPCILSFASLINHLCKEGRVFEAQRIFDMIIRTGEKADVNIFTSLIDGYCLIGKMS 543

Query: 562 SASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTIL 621
            A  +   MV  G  P  +TY  L+      G  D+ L L   +  +G+      Y  IL
Sbjct: 544 EAFRVHDAMVSVGIEPDIVTYGTLVNGCCKNGRIDDGLILFRELLHKGVKPTTFTYGIIL 603

Query: 622 KKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
                 GR    + + ++M ++ +     T   + +G      +N   EA+ V 
Sbjct: 604 DGLFHAGRTAAAKEMFQEMIESGIAVTIPTYSILLTGLCR---NNCTEEAITVF 654


>gi|357120446|ref|XP_003561938.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Brachypodium distachyon]
          Length = 787

 Score = 86.3 bits (212), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 101/490 (20%), Positives = 187/490 (38%), Gaps = 70/490 (14%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ +++A  R    G A  L+ +M+  G+ P+  TY+  + A      ++   +V++ M
Sbjct: 241 TYNTLLNAHCRKGMLGEARALLARMKKDGVAPTRPTYNTLVSAYARLGWIKQATKVVEAM 300

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDK 410
             N  +P   T   L+    +A ++D A  L D++ R     P    ++    AC     
Sbjct: 301 TANGFEPDLWTYNVLAAGLCQAGKVDEAFRLKDEMERLGTLLPDVVTYNTLADACFKCRC 360

Query: 411 PERAIKIFAKMRQK------------------------------------LRPDIRTYEL 434
              A+++  +MR+K                                    L PD+ TY  
Sbjct: 361 SSDALRLLEEMREKGVKATLVTHNIVIKGLCKDGELEGALGCLNKMADDGLAPDVITYNT 420

Query: 435 LFSLF---GNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNI--QHSHISMKNLLKALGA 489
           L       GN+   Y    M   V    +++   ++    N+  +  +   + LL++   
Sbjct: 421 LIHAHCKAGNIAKAYTL--MDEMVRRGLKLDTFTLNTVLYNLCKEKRYEEAQGLLQSPPQ 478

Query: 490 EGMIRELIQY----------------------FCDSKTPLGTPTYNTVLHSLVEAQESHR 527
            G + + + Y                        + K      TYNT++  L        
Sbjct: 479 RGFMPDEVSYGTVMAAYFKEYNSEPALRLWDEMIEKKLTPSISTYNTLIKGLSRMGRLKE 538

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A++   ++   G+ P+  TYNI+I         ++A    + MV + F P  +T   L+ 
Sbjct: 539 AIDKLNELMEKGLVPDDTTYNIIIHAYCKEGDLENAFQFHNKMVENSFKPDVVTCNTLMN 598

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
            L   G  D+AL L +    +G   DV+ YNT+++  C+ G +D        M    +QP
Sbjct: 599 GLCLNGKLDKALKLFESWVEKGKKVDVITYNTLIQTMCKDGDVDTALHFFADMEARGLQP 658

Query: 648 DPSTCHFVFSGYVNCGFHNSAMEALQVLSMR-MLCEEVSTLEEKRSDFEDLILAEDSEAE 706
           D  T + V S     G    A   L  L+    L +  S+   K S  ++    +D++ E
Sbjct: 659 DAFTYNVVLSALSEAGRTEEAQNMLHKLAESGTLSQSFSSPLLKPSSVDEAESGKDAKTE 718

Query: 707 SRILQFCEDS 716
              ++  +DS
Sbjct: 719 EETVENPQDS 728



 Score = 69.3 bits (168), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 78/345 (22%), Positives = 143/345 (41%), Gaps = 52/345 (15%)

Query: 321 SLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIAT-LSVECSKALEL 379
           +L L P+ +T++  +    S   L + +  L  MQ   L P   T  T L+  C K + L
Sbjct: 197 ALRLHPNHYTFNLLVHTHCSKGTLADALSTLSTMQGFGLSPDAVTYNTLLNAHCRKGM-L 255

Query: 380 DLAEALLDQISR----CTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYEL 434
             A ALL ++ +     T P  ++  ++A   +   ++A K+   M      PD+ TY +
Sbjct: 256 GEARALLARMKKDGVAPTRPT-YNTLVSAYARLGWIKQATKVVEAMTANGFEPDLWTYNV 314

Query: 435 LFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIR 494
           L +  G   A         +VD A R                   +K+ ++ LG   ++ 
Sbjct: 315 LAA--GLCQA--------GKVDEAFR-------------------LKDEMERLGT--LLP 343

Query: 495 ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCC 554
           +++             TYNT+  +  + + S  A+ + ++M+  G+     T+NI+I   
Sbjct: 344 DVV-------------TYNTLADACFKCRCSSDALRLLEEMREKGVKATLVTHNIVIKGL 390

Query: 555 SIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDV 614
                 + A   ++ M  DG  P  +TY  LI      G+  +A  L+D +   G+  D 
Sbjct: 391 CKDGELEGALGCLNKMADDGLAPDVITYNTLIHAHCKAGNIAKAYTLMDEMVRRGLKLDT 450

Query: 615 LLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
              NT+L   C++ R +  + +++   Q    PD  +   V + Y
Sbjct: 451 FTLNTVLYNLCKEKRYEEAQGLLQSPPQRGFMPDEVSYGTVMAAY 495



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 89/415 (21%), Positives = 176/415 (42%), Gaps = 70/415 (16%)

Query: 294 WSFSDVIHA-CGRTQNSGLAEQL--MLQMQSLGLQPSSHTYD------------GFIRAI 338
           ++F+ ++H  C +     LA+ L  +  MQ  GL P + TY+            G  RA+
Sbjct: 205 YTFNLLVHTHCSK---GTLADALSTLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARAL 261

Query: 339 VSDRGLRNGM------------------------EVLKIMQQNNLKPQDSTIATLSVECS 374
           ++ R  ++G+                        +V++ M  N  +P   T   L+    
Sbjct: 262 LA-RMKKDGVAPTRPTYNTLVSAYARLGWIKQATKVVEAMTANGFEPDLWTYNVLAAGLC 320

Query: 375 KALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDKPERAIKIFAKMRQK-LRPDI 429
           +A ++D A  L D++ R     P    ++    AC        A+++  +MR+K ++  +
Sbjct: 321 QAGKVDEAFRLKDEMERLGTLLPDVVTYNTLADACFKCRCSSDALRLLEEMREKGVKATL 380

Query: 430 RTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI--NAIEMD-MARNNIQHSHISMKNLLKA 486
            T+ ++      +    ++G +   +    ++  + +  D +  N + H+H    N+ KA
Sbjct: 381 VTHNIV------IKGLCKDGELEGALGCLNKMADDGLAPDVITYNTLIHAHCKAGNIAKA 434

Query: 487 LG-AEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAA 545
               + M+R  ++        L T T NTVL++L + +    A  + +     G  P+  
Sbjct: 435 YTLMDEMVRRGLK--------LDTFTLNTVLYNLCKEKRYEEAQGLLQSPPQRGFMPDEV 486

Query: 546 TYNIMIDCCSIIRCFKSASALV--SMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLD 603
           +Y  ++   +  + + S  AL     M+     P   TY  LIK L   G   EA++ L+
Sbjct: 487 SYGTVM--AAYFKEYNSEPALRLWDEMIEKKLTPSISTYNTLIKGLSRMGRLKEAIDKLN 544

Query: 604 LVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
            +  +G+  D   YN I+   C++G ++       +M +N  +PD  TC+ + +G
Sbjct: 545 ELMEKGLVPDDTTYNIIIHAYCKEGDLENAFQFHNKMVENSFKPDVVTCNTLMNG 599



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/164 (22%), Positives = 73/164 (44%), Gaps = 1/164 (0%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           T+N ++H+         A+     M+  G+ P+A TYN +++          A AL++ M
Sbjct: 206 TFNLLVHTHCSKGTLADALSTLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARM 265

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
            +DG  P   TY  L+      G   +A  +++ ++  G   D+  YN +    C+ G++
Sbjct: 266 KKDGVAPTRPTYNTLVSAYARLGWIKQATKVVEAMTANGFEPDLWTYNVLAAGLCQAGKV 325

Query: 631 DVIEFIIEQMHQ-NKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           D    + ++M +   + PD  T + +      C   + A+  L+
Sbjct: 326 DEAFRLKDEMERLGTLLPDVVTYNTLADACFKCRCSSDALRLLE 369



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 105/492 (21%), Positives = 197/492 (40%), Gaps = 53/492 (10%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYG-IYPILPVYNSFLGACAKLHSMVHANLCLDL 183
           Y ++   LC+ G ++EA  L   + ER G + P +  YN+   AC K      A   L+ 
Sbjct: 312 YNVLAAGLCQAGKVDEAFRLKDEM-ERLGTLLPDVVTYNTLADACFKCRCSSDALRLLEE 370

Query: 184 MDSRMVGKNEVTYT----ELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTR 239
           M  + V    VT+      L K    +  L  ++++ +D +   +  + +    + +  +
Sbjct: 371 MREKGVKATLVTHNIVIKGLCKDGELEGALGCLNKMADDGL---APDVITYNTLIHAHCK 427

Query: 240 LRDLKSAYETLQHMVALAM------MGKLYINRTSEGRLRSSR--LDIPIPLNALPVMKV 291
             ++  AY  +  MV   +      +  +  N   E R   ++  L  P     +P    
Sbjct: 428 AGNIAKAYTLMDEMVRRGLKLDTFTLNTVLYNLCKEKRYEEAQGLLQSPPQRGFMPD--- 484

Query: 292 LRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVL 351
              S+  V+ A  +  NS  A +L  +M    L PS  TY+  I+ +     L+  ++ L
Sbjct: 485 -EVSYGTVMAAYFKEYNSEPALRLWDEMIEKKLTPSISTYNTLIKGLSRMGRLKEAIDKL 543

Query: 352 KIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTM--- 408
             + +  L P D+T   +     K  E DL  A   Q         F   +  C+T+   
Sbjct: 544 NELMEKGLVPDDTTYNIIIHAYCK--EGDLENAF--QFHNKMVENSFKPDVVTCNTLMNG 599

Query: 409 ----DKPERAIKIFAKMRQKLRP-DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINA 463
                K ++A+K+F    +K +  D+ TY  L           ++G+    VD+A    A
Sbjct: 600 LCLNGKLDKALKLFESWVEKGKKVDVITYNTLIQTM------CKDGD----VDTALHFFA 649

Query: 464 IEMDMARNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLV 520
              DM    +Q    +   +L AL   G   E   ++    +S T   + ++++ L    
Sbjct: 650 ---DMEARGLQPDAFTYNVVLSALSEAGRTEEAQNMLHKLAESGT--LSQSFSSPLLKPS 704

Query: 521 EAQESHRAMEIFKQMKTCGIPPNAAT--YNIMIDCCSIIRCFKSASALVSMMVRDGFYPQ 578
              E+    +   + +T   P ++A+  Y  +++       FK A A++  M++ G    
Sbjct: 705 SVDEAESGKDAKTEEETVENPQDSASEAYTKLVNGLCTSGQFKEAKAILDEMMQKGMSVD 764

Query: 579 TMTYTALIKILL 590
           + TY  L++ L+
Sbjct: 765 SSTYITLMEGLV 776



 Score = 49.3 bits (116), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 64/153 (41%), Gaps = 2/153 (1%)

Query: 513 NTVLHSLVEAQES--HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           N VL +L  +  +    +++ F+ +    + PN  T+N+++           A + +S M
Sbjct: 171 NAVLSALARSPSTSPQASLDAFRSIVALRLHPNHYTFNLLVHTHCSKGTLADALSTLSTM 230

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
              G  P  +TY  L+      G   EA  LL  +  +G+      YNT++      G I
Sbjct: 231 QGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKKDGVAPTRPTYNTLVSAYARLGWI 290

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
                ++E M  N  +PD  T + + +G    G
Sbjct: 291 KQATKVVEAMTANGFEPDLWTYNVLAAGLCQAG 323



 Score = 46.2 bits (108), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 24/102 (23%), Positives = 47/102 (46%)

Query: 575 FYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIE 634
            +P   T+  L+      G   +AL+ L  +   G+  D + YNT+L   C KG +    
Sbjct: 200 LHPNHYTFNLLVHTHCSKGTLADALSTLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEAR 259

Query: 635 FIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
            ++ +M ++ V P   T + + S Y   G+   A + ++ ++
Sbjct: 260 ALLARMKKDGVAPTRPTYNTLVSAYARLGWIKQATKVVEAMT 301


>gi|302758218|ref|XP_002962532.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
 gi|300169393|gb|EFJ35995.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
          Length = 1031

 Score = 86.3 bits (212), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 103/551 (18%), Positives = 216/551 (39%), Gaps = 22/551 (3%)

Query: 99  RSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPIL 158
           R  D    +E  + M E+++  +   Y +++  LCK    ++AS +++ + +R G+ P  
Sbjct: 238 RKNDCDGALEFLKEMNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDR-GVTPDT 296

Query: 159 PVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWED 218
             +NS +    K      A+  L +M  R    +  TY  L+     Q+N+    ++ ++
Sbjct: 297 VTFNSIMDGLCKAGKFERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKDLVDE 356

Query: 219 YIKH-YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYI-NRTSEGRLRSSR 276
           ++   +   + +         +   +  A+E ++ M        L   N   +G  ++S+
Sbjct: 357 FVSSGFVPDVVTYSILADGLCKRGRIDEAFELVKEMSGKGCTPNLVTYNTLIDGLCKASK 416

Query: 277 LDIPIPL-----NALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTY 331
            +    L     ++  V  V+ ++   ++    +      A +++  M   G  PS  TY
Sbjct: 417 TEKAYELLESLVSSGFVPDVVTYTI--IVDGLCKEGRLDKALKMVEGMLKRGCTPSVITY 474

Query: 332 DGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR 391
              +  +     +     + K M   +         +L     K+     A+ ++D I  
Sbjct: 475 TALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRG 534

Query: 392 CTNPKPFSAFLAACDTMDKPERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGN 450
                 ++A +       + +    +F  M  +   P+I+TY ++           E   
Sbjct: 535 TPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFP 594

Query: 451 MFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP 510
               + SA  +          ++   +I +  L KA       R+++     +  P    
Sbjct: 595 FLESMHSAGCVP---------DVVSYNIIIDGLFKA-SKPKEARQVLDQMIQAGIPPDAV 644

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TYNT++    + +    A+ I K M   G+ P+  TYN +I   S       A  L+  M
Sbjct: 645 TYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEM 704

Query: 571 VRDG-FYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
           +R+G       TY  +I  L   G   +AL L+D ++  G+  + + YN  + + C++GR
Sbjct: 705 LRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGR 764

Query: 630 IDVIEFIIEQM 640
           +D    ++ +M
Sbjct: 765 LDEASSLLSEM 775



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 81/372 (21%), Positives = 145/372 (38%), Gaps = 35/372 (9%)

Query: 318 QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKAL 377
           +M   G  P S+TY   I+++     +     +L   +    KP+ S    L+    K  
Sbjct: 150 RMLDAGYAPDSYTYHLVIKSLCQMNQIDKAFTMLDKAKVRGFKPEVSVYTILTRAFCKTG 209

Query: 378 ELDLAEALLDQISRCTNPKP----FSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTY 432
            L  A  +   I     P P    ++A +      +  + A++   +M + K+ PD+ TY
Sbjct: 210 RLKDALEIFRNI-----PSPDAIAYNAIIHGHCRKNDCDGALEFLKEMNERKVAPDVFTY 264

Query: 433 ELLFSLFGNVNAPYEEGNMFSQ-VDSA---------------------KRINAIEMDMAR 470
            +L       +   +   M  + VD                       +R +++   MA 
Sbjct: 265 NILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAE 324

Query: 471 NNIQHSHISMKNLLKALGAEGMI---RELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHR 527
            N + S  +   L+  L  +  +   ++L+  F  S       TY+ +   L +      
Sbjct: 325 RNCRPSCCTYNTLISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSILADGLCKRGRIDE 384

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A E+ K+M   G  PN  TYN +ID        + A  L+  +V  GF P  +TYT ++ 
Sbjct: 385 AFELVKEMSGKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVPDVVTYTIIVD 444

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
            L   G  D+AL +++ +   G    V+ Y  +++  C  GR+D    I ++M       
Sbjct: 445 GLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTA 504

Query: 648 DPSTCHFVFSGY 659
           D      + +GY
Sbjct: 505 DALAYVSLVNGY 516



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/280 (23%), Positives = 118/280 (42%), Gaps = 15/280 (5%)

Query: 408 MDKPERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM 466
           M++ ++A  +  K + +  +P++  Y +L   F       +   +F  + S   I     
Sbjct: 173 MNQIDKAFTMLDKAKVRGFKPEVSVYTILTRAFCKTGRLKDALEIFRNIPSPDAI----- 227

Query: 467 DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESH 526
             A N I H H    +   AL       E ++   + K      TYN ++  L +A ++ 
Sbjct: 228 --AYNAIIHGHCRKNDCDGAL-------EFLKEMNERKVAPDVFTYNILIDGLCKASKTD 278

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
           +A E+  +M   G+ P+  T+N ++D       F+ A +L+++M      P   TY  LI
Sbjct: 279 KASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERNCRPSCCTYNTLI 338

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
             L    + D A +L+D     G   DV+ Y+ +    C++GRID    ++++M      
Sbjct: 339 SGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFELVKEMSGKGCT 398

Query: 647 PDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           P+  T + +  G         A E L+ L       +V T
Sbjct: 399 PNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVPDVVT 438



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 118/560 (21%), Positives = 222/560 (39%), Gaps = 43/560 (7%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y ++   LCK G ++EA  L+  +  + G  P L  YN+ +    K      A   L+ +
Sbjct: 369 YSILADGLCKRGRIDEAFELVKEMSGK-GCTPNLVTYNTLIDGLCKASKTEKAYELLESL 427

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH-YSLSIFSLRKFVWSFTRLRDL 243
            S     + VTYT ++     +  L    ++ E  +K   + S+ +    +    R   +
Sbjct: 428 VSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRV 487

Query: 244 KSAYETLQHMVALAMMGKL--YINRTSEGRLRSSRLDIPIPLNALPVMKVLRWS-FSDVI 300
             A+   + MV+         Y++  + G  +SSR        A  V+  +R + + DV 
Sbjct: 488 DEAHHIFKEMVSKDCTADALAYVSLVN-GYCKSSRTK-----EAQKVVDGIRGTPYIDVY 541

Query: 301 HAC--GRTQNSGLAE--QLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQ 356
           +A   G  +   L E   +   M   G  P+  TY+  +  +     +      L+ M  
Sbjct: 542 NALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHS 601

Query: 357 NNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPK---PFSAFLAACDTMDKPER 413
               P   +   +     KA +   A  +LDQ+ +   P     ++  +A     ++ + 
Sbjct: 602 AGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDD 661

Query: 414 AIKIFAKM-RQKLRPDIRTYELLFSLFGNVNA---PYE-------EGNMFSQVDSAKRI- 461
           A+ I   M +  + PD  TY  L S     N     YE        G + S   +   I 
Sbjct: 662 AVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTII 721

Query: 462 -----------NAIEMD-MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGT 509
                        + MD M  + ++ + ++    +  L  EG + E      +  T    
Sbjct: 722 DRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEMDTLRDE 781

Query: 510 PTYNTVLHSLVEAQESHRAMEIFKQMKTC-GIPPNAATYNIMIDCCSIIRCFKSASALVS 568
            +Y TV+  L +A++  RA ++ ++M    G+   + T+N++ID  +  +    A  L+ 
Sbjct: 782 VSYTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLG 841

Query: 569 MMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
           +MV+ G  P  +TY  +I  L      D+A  L D +++ GI    + Y  ++   C +G
Sbjct: 842 LMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQG 901

Query: 629 RIDVIEFIIEQMHQNKVQPD 648
           R      ++E+M  +  + D
Sbjct: 902 RGKEALQVLEEMASSDCEID 921



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/253 (22%), Positives = 112/253 (44%), Gaps = 16/253 (6%)

Query: 427 PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLL-K 485
           PD  TY L+      +N          Q+D A  +    +D A+       +S+  +L +
Sbjct: 158 PDSYTYHLVIKSLCQMN----------QIDKAFTM----LDKAKVRGFKPEVSVYTILTR 203

Query: 486 ALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAA 545
           A    G +++ ++ F +  +P     YN ++H      +   A+E  K+M    + P+  
Sbjct: 204 AFCKTGRLKDALEIFRNIPSPDAI-AYNAIIHGHCRKNDCDGALEFLKEMNERKVAPDVF 262

Query: 546 TYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLV 605
           TYNI+ID          AS ++  MV  G  P T+T+ +++  L   G F+ A +LL ++
Sbjct: 263 TYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVM 322

Query: 606 SLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFH 665
           +          YNT++   C++  +D  + ++++   +   PD  T   +  G    G  
Sbjct: 323 AERNCRPSCCTYNTLISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSILADGLCKRGRI 382

Query: 666 NSAMEALQVLSMR 678
           + A E ++ +S +
Sbjct: 383 DEAFELVKEMSGK 395



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 111/546 (20%), Positives = 204/546 (37%), Gaps = 33/546 (6%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y L++++LC+   +++A  ++     R G  P + VY     A  K   +  A   L++ 
Sbjct: 163 YHLVIKSLCQMNQIDKAFTMLDKAKVR-GFKPEVSVYTILTRAFCKTGRLKDA---LEIF 218

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYSLSIFSLRKFVWSFTRLRDL 243
              +   + + Y  ++     + +     E  ++   +  +  +F+    +    +    
Sbjct: 219 -RNIPSPDAIAYNAIIHGHCRKNDCDGALEFLKEMNERKVAPDVFTYNILIDGLCKASKT 277

Query: 244 KSAYETLQHMVALAMM-GKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWS---FSDV 299
             A E L  MV   +    +  N   +G  ++ + +    L A+   +  R S   ++ +
Sbjct: 278 DKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERNCRPSCCTYNTL 337

Query: 300 IHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNL 359
           I    + QN   A+ L+ +  S G  P   TY      +     +    E++K M     
Sbjct: 338 ISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFELVKEMSGKGC 397

Query: 360 KPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPER---AIK 416
            P   T  TL     KA + + A  LL+ +           +    D + K  R   A+K
Sbjct: 398 TPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVPDVVTYTIIVDGLCKEGRLDKALK 457

Query: 417 IFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQH 475
           +   M ++   P + TY  L           E  ++F +             M   +   
Sbjct: 458 MVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKE-------------MVSKDCTA 504

Query: 476 SHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIF 532
             ++  +L+         +E  Q   D     GTP    YN ++    +         +F
Sbjct: 505 DALAYVSLVNGYCKSSRTKE-AQKVVDGIR--GTPYIDVYNALMDGYCKEGRLDEIPNVF 561

Query: 533 KQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDY 592
           + M   G  PN  TYNI++D          A   +  M   G  P  ++Y  +I  L   
Sbjct: 562 EDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKA 621

Query: 593 GDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTC 652
               EA  +LD +   GIP D + YNT++ + C++ R D    I++ M +  V PD  T 
Sbjct: 622 SKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTY 681

Query: 653 HFVFSG 658
           + + SG
Sbjct: 682 NTLISG 687



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 83/421 (19%), Positives = 155/421 (36%), Gaps = 93/421 (22%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ +IH   R  +   A + + +M    + P   TY+  I  +          E+L  M
Sbjct: 228 AYNAIIHGHCRKNDCDGALEFLKEMNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEM 287

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR------CTNPKPFSAFLAACDTM 408
               + P   T  ++     KA + + A +LL  ++       C       + L     +
Sbjct: 288 VDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNV 347

Query: 409 DKPERAIKIFAKMRQKLRPDIRTYELLFSLF---GNVNAPYEEGNMFSQVDSAKRINAIE 465
           D+ +  +  F  +     PD+ TY +L       G ++  +E                  
Sbjct: 348 DRAKDLVDEF--VSSGFVPDVVTYSILADGLCKRGRIDEAFE------------------ 387

Query: 466 MDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQES 525
                            L+K +  +G    L+             TYNT++  L +A ++
Sbjct: 388 -----------------LVKEMSGKGCTPNLV-------------TYNTLIDGLCKASKT 417

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
            +A E+ + + + G  P+  TY I++D          A  +V  M++ G  P  +TYTAL
Sbjct: 418 EKAYELLESLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTAL 477

Query: 586 IKILLDYGDFDEALNLL-DLVS--------------------------------LEGIPH 612
           ++ L   G  DEA ++  ++VS                                + G P+
Sbjct: 478 MEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRGTPY 537

Query: 613 DVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEAL 672
            + +YN ++   C++GR+D I  + E M      P+  T + V  G    G  + A   L
Sbjct: 538 -IDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFL 596

Query: 673 Q 673
           +
Sbjct: 597 E 597



 Score = 64.3 bits (155), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 8/181 (4%)

Query: 509 TPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC-CSIIRCFKSASALV 567
           T T N  L +L+E   S R   +F++M   G  P++ TY+++I   C + +  K+ + L 
Sbjct: 125 TFTRNCFLQTLLENGSSDRIPAMFERMLDAGYAPDSYTYHLVIKSLCQMNQIDKAFTMLD 184

Query: 568 SMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPH-DVLLYNTILKKACE 626
              VR GF P+   YT L +     G   +AL +        IP  D + YN I+   C 
Sbjct: 185 KAKVR-GFKPEVSVYTILTRAFCKTGRLKDALEIF-----RNIPSPDAIAYNAIIHGHCR 238

Query: 627 KGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           K   D     +++M++ KV PD  T + +  G       + A E L  +  R +  +  T
Sbjct: 239 KNDCDGALEFLKEMNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVT 298

Query: 687 L 687
            
Sbjct: 299 F 299



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 79/390 (20%), Positives = 150/390 (38%), Gaps = 28/390 (7%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           ++++ +I    +   +  A +++ +M   G+ P + T++  +  +           +L +
Sbjct: 262 FTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAV 321

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPER 413
           M + N +P   T  TL     K   +D A+ L+D+            +    D + K  R
Sbjct: 322 MAERNCRPSCCTYNTLISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSILADGLCKRGR 381

Query: 414 ---AIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
              A ++  +M  K   P++ TY  L       +   +   +   + S+  +  +   + 
Sbjct: 382 IDEAFELVKEMSGKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVPDV---VT 438

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAM 529
              I         L KAL    M+  +++  C   TP    TY  ++  L        A 
Sbjct: 439 YTIIVDGLCKEGRLDKALK---MVEGMLKRGC---TP-SVITYTALMEGLCRTGRVDEAH 491

Query: 530 EIFKQMKTCGIPPNAATYNIMID--CCSIIRCFKSASALVSMMVRDGF--YPQTMTYTAL 585
            IFK+M +     +A  Y  +++  C       KS+    +  V DG    P    Y AL
Sbjct: 492 HIFKEMVSKDCTADALAYVSLVNGYC-------KSSRTKEAQKVVDGIRGTPYIDVYNAL 544

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           +      G  DE  N+ + ++  G   ++  YN ++   C+ G++D     +E MH    
Sbjct: 545 MDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGC 604

Query: 646 QPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
            PD  + + +  G       +   EA QVL
Sbjct: 605 VPDVVSYNIIIDGLFK---ASKPKEARQVL 631



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/212 (22%), Positives = 83/212 (39%), Gaps = 11/212 (5%)

Query: 472 NIQHSHISMKNLLKAL---GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRA 528
             +HS  +    L+ L   G+   I  + +   D+     + TY+ V+ SL +  +  +A
Sbjct: 120 GFKHSTFTRNCFLQTLLENGSSDRIPAMFERMLDAGYAPDSYTYHLVIKSLCQMNQIDKA 179

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM--VRDGFYPQTMTYTALI 586
             +  + K  G  P  + Y I+       R F     L   +   R+   P  + Y A+I
Sbjct: 180 FTMLDKAKVRGFKPEVSVYTILT------RAFCKTGRLKDALEIFRNIPSPDAIAYNAII 233

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
                  D D AL  L  ++   +  DV  YN ++   C+  + D    ++ +M    V 
Sbjct: 234 HGHCRKNDCDGALEFLKEMNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVT 293

Query: 647 PDPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678
           PD  T + +  G    G    A   L V++ R
Sbjct: 294 PDTVTFNSIMDGLCKAGKFERAHSLLAVMAER 325


>gi|242041853|ref|XP_002468321.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
 gi|241922175|gb|EER95319.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
          Length = 794

 Score = 86.3 bits (212), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 121/597 (20%), Positives = 230/597 (38%), Gaps = 71/597 (11%)

Query: 68  RSRASHLLLNL-------GHAHHSLGADDFFHILNYCARSPD--PLFVMETWRMMEEKEI 118
           R R  HL   L       GH   SL A +   +L+  ARSP   P   ++ +R +    +
Sbjct: 149 RLRLPHLAAQLLHSFRRRGHVRPSLQAAN--AVLSALARSPSTSPQASLDVFRSLIALRL 206

Query: 119 GLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHAN 178
             N+  + L++   C  G L +A + +  + + +G+ P +  YN+ L A  +   +  A 
Sbjct: 207 HPNHYTFNLLVHTHCSKGTLADALSTLSTM-QGFGLSPDVVTYNTLLKAHCRKGMLGEAR 265

Query: 179 LCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFT 238
             L  M    +     TY  L                                  V ++ 
Sbjct: 266 TLLARMKKEGIAPTRATYNTL----------------------------------VSAYA 291

Query: 239 RLRDLKSAYETLQHMVALAMMGKLYI-NRTSEGRLRSSRLDIPIPLNA----LPVMKVLR 293
           RL  +K A   ++ M A      L+  N  + G  ++ ++D    L      L ++    
Sbjct: 292 RLGWIKQATNVVEAMTAFGFEPDLWTYNVLAAGLCQAGKVDEAFKLKDEMEHLSIVSPDV 351

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
            +++ ++ AC + Q S  A  L+ +M+  G++ S  T++  ++ +  +  L   +  LK+
Sbjct: 352 VTYNTLVDACFKYQRSSDALNLLEEMRDKGVKSSLVTHNIVVKGLCREGQLEEALGRLKM 411

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT---NPKPFSAFLAACDTMDK 410
           M +  L P   T  TL     KA  +  A  L+D++ R     +    +  L       +
Sbjct: 412 MTEEGLAPDVITYNTLIDAYCKARNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKR 471

Query: 411 PERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
            E A ++     Q+   PD  +Y  + + +   N P     ++ +             M+
Sbjct: 472 YEEAEELLRSPPQRGFVPDEVSYGTVMAAYFKENKPEPALYLWDE-------------MS 518

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESH 526
           +  +  S  +   L+K L   G + E I    +       P   TYN ++H+  +  +  
Sbjct: 519 KRKLTPSIYTYNTLIKGLCTIGKLTEAIDKLNELMKKGLVPDDTTYNIIIHAYCKEGDLE 578

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
           +A +   +M      P+  T N +++   +    + A  L       G     +TY  LI
Sbjct: 579 KAFQFHNKMLENYFKPDVVTCNTLMNGLCLHGKLEKAIKLFESWAEKGKKVDVITYNTLI 638

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
           + L   GD D AL+    +   G+  D   YN +L    E GR +  + ++ ++ ++
Sbjct: 639 QALCKDGDVDTALHFFADMEARGLQPDAFTYNVVLSALSEAGRSEEAQNMLHKLDES 695



 Score = 80.1 bits (196), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 96/478 (20%), Positives = 187/478 (39%), Gaps = 65/478 (13%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ ++ A  R    G A  L+ +M+  G+ P+  TY+  + A      ++    V++ M
Sbjct: 247 TYNTLLKAHCRKGMLGEARTLLARMKKEGIAPTRATYNTLVSAYARLGWIKQATNVVEAM 306

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDK 410
                +P   T   L+    +A ++D A  L D++   +   P    ++  + AC    +
Sbjct: 307 TAFGFEPDLWTYNVLAAGLCQAGKVDEAFKLKDEMEHLSIVSPDVVTYNTLVDACFKYQR 366

Query: 411 PERAIKIFAKMRQK-LRPDIRTYELLFS----------LFGNVNAPYEEG---------- 449
              A+ +  +MR K ++  + T+ ++              G +    EEG          
Sbjct: 367 SSDALNLLEEMRDKGVKSSLVTHNIVVKGLCREGQLEEALGRLKMMTEEGLAPDVITYNT 426

Query: 450 --NMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL-------GAEGMIRELIQ-- 498
             + + +  +  +   +  +M R+ ++    ++  LL  L        AE ++R   Q  
Sbjct: 427 LIDAYCKARNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKRYEEAEELLRSPPQRG 486

Query: 499 --------------YFCDSKTPLG------------TP---TYNTVLHSLVEAQESHRAM 529
                         YF ++K                TP   TYNT++  L    +   A+
Sbjct: 487 FVPDEVSYGTVMAAYFKENKPEPALYLWDEMSKRKLTPSIYTYNTLIKGLCTIGKLTEAI 546

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
           +   ++   G+ P+  TYNI+I         + A    + M+ + F P  +T   L+  L
Sbjct: 547 DKLNELMKKGLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMLENYFKPDVVTCNTLMNGL 606

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649
             +G  ++A+ L +  + +G   DV+ YNT+++  C+ G +D        M    +QPD 
Sbjct: 607 CLHGKLEKAIKLFESWAEKGKKVDVITYNTLIQALCKDGDVDTALHFFADMEARGLQPDA 666

Query: 650 STCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDFEDLILAEDSEAES 707
            T + V S     G    A   L  L       E  +    +S  E++   +D E +S
Sbjct: 667 FTYNVVLSALSEAGRSEEAQNMLHKLDESGKLSERFSYPLIKSSAEEVKTGKDPEVKS 724



 Score = 70.1 bits (170), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 85/382 (22%), Positives = 152/382 (39%), Gaps = 37/382 (9%)

Query: 321 SLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL-SVECSKALEL 379
           +L L P+ +T++  +    S   L + +  L  MQ   L P   T  TL    C K + L
Sbjct: 203 ALRLHPNHYTFNLLVHTHCSKGTLADALSTLSTMQGFGLSPDVVTYNTLLKAHCRKGM-L 261

Query: 380 DLAEALLDQISR---CTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELL 435
             A  LL ++ +         ++  ++A   +   ++A  +   M      PD+ TY +L
Sbjct: 262 GEARTLLARMKKEGIAPTRATYNTLVSAYARLGWIKQATNVVEAMTAFGFEPDLWTYNVL 321

Query: 436 FSLF---GNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNI--------QHSHISMKNLL 484
            +     G V+        F   D  + ++ +  D+   N         Q S  ++ NLL
Sbjct: 322 AAGLCQAGKVD------EAFKLKDEMEHLSIVSPDVVTYNTLVDACFKYQRSSDAL-NLL 374

Query: 485 KALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNA 544
           + +  +G+   L+             T+N V+  L    +   A+   K M   G+ P+ 
Sbjct: 375 EEMRDKGVKSSLV-------------THNIVVKGLCREGQLEEALGRLKMMTEEGLAPDV 421

Query: 545 ATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDL 604
            TYN +ID     R    A  L+  MVR G    T T   L+  L     ++EA  LL  
Sbjct: 422 ITYNTLIDAYCKARNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKRYEEAEELLRS 481

Query: 605 VSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGF 664
               G   D + Y T++    ++ + +   ++ ++M + K+ P   T + +  G    G 
Sbjct: 482 PPQRGFVPDEVSYGTVMAAYFKENKPEPALYLWDEMSKRKLTPSIYTYNTLIKGLCTIGK 541

Query: 665 HNSAMEALQVLSMRMLCEEVST 686
              A++ L  L  + L  + +T
Sbjct: 542 LTEAIDKLNELMKKGLVPDDTT 563



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 88/397 (22%), Positives = 171/397 (43%), Gaps = 38/397 (9%)

Query: 294 WSFSDVIHA-CGRTQNSGLAEQL--MLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEV 350
           ++F+ ++H  C +     LA+ L  +  MQ  GL P   TY+  ++A      L     +
Sbjct: 211 YTFNLLVHTHCSK---GTLADALSTLSTMQGFGLSPDVVTYNTLLKAHCRKGMLGEARTL 267

Query: 351 LKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT-NPK--PFSAFLAACDT 407
           L  M++  + P  +T  TL    ++   +  A  +++ ++     P    ++   A    
Sbjct: 268 LARMKKEGIAPTRATYNTLVSAYARLGWIKQATNVVEAMTAFGFEPDLWTYNVLAAGLCQ 327

Query: 408 MDKPERAIKIFAKMRQK--LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIE 465
             K + A K+  +M     + PD+ TY  L      V+A       F    S+  +N +E
Sbjct: 328 AGKVDEAFKLKDEMEHLSIVSPDVVTYNTL------VDA------CFKYQRSSDALNLLE 375

Query: 466 MDMARNNIQHSHISMKNLLKALGAEGMIRELI---QYFCDSKTPLGTPTYNTVLHSLVEA 522
            +M    ++ S ++   ++K L  EG + E +   +   +        TYNT++ +  +A
Sbjct: 376 -EMRDKGVKSSLVTHNIVVKGLCREGQLEEALGRLKMMTEEGLAPDVITYNTLIDAYCKA 434

Query: 523 QESHRAMEIFKQMKTCGIPPNAATYNIMI-DCCSIIRCFKSASALVSMMVRDGFYPQTMT 581
           +   +A  +  +M   G+  +  T N ++ + C   R ++ A  L+    + GF P  ++
Sbjct: 435 RNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKR-YEEAEELLRSPPQRGFVPDEVS 493

Query: 582 YTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI-DVIEFIIEQM 640
           Y  ++         + AL L D +S   +   +  YNT++K  C  G++ + I+ + E M
Sbjct: 494 YGTVMAAYFKENKPEPALYLWDEMSKRKLTPSIYTYNTLIKGLCTIGKLTEAIDKLNELM 553

Query: 641 HQNKVQPDPSTCHFVFSGYVNCG-------FHNSAME 670
            +  V PD +T + +   Y   G       FHN  +E
Sbjct: 554 KKGLV-PDDTTYNIIIHAYCKEGDLEKAFQFHNKMLE 589



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 73/172 (42%), Gaps = 8/172 (4%)

Query: 513 NTVLHSLVEAQES--HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           N VL +L  +  +    ++++F+ +    + PN  T+N+++           A + +S M
Sbjct: 177 NAVLSALARSPSTSPQASLDVFRSLIALRLHPNHYTFNLLVHTHCSKGTLADALSTLSTM 236

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
              G  P  +TY  L+K     G   EA  LL  +  EGI      YNT++      G I
Sbjct: 237 QGFGLSPDVVTYNTLLKAHCRKGMLGEARTLLARMKKEGIAPTRATYNTLVSAYARLGWI 296

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSA------MEALQVLS 676
                ++E M     +PD  T + + +G    G  + A      ME L ++S
Sbjct: 297 KQATNVVEAMTAFGFEPDLWTYNVLAAGLCQAGKVDEAFKLKDEMEHLSIVS 348


>gi|357477483|ref|XP_003609027.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510082|gb|AES91224.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 583

 Score = 86.3 bits (212), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 87/382 (22%), Positives = 158/382 (41%), Gaps = 27/382 (7%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGM----EV 350
           +F+  I+   R      AE  +  M++ G+ P+  TY+  +      RG    M      
Sbjct: 202 TFNIFINGLCRAGKLNKAEDAIEDMKAWGISPNVVTYNTLVDGYCK-RGSAGKMYKAEAF 260

Query: 351 LKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACD 406
           +K M  N + P + T  TL     K   +  A+   +++ +    KP    +++ +    
Sbjct: 261 MKEMLANKICPNEVTFNTLIDGFCKDENVAAAKKAFEEMQK-QGLKPNIVTYNSLINGLC 319

Query: 407 TMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIE 465
              K E AI ++ KM    L+P+I TY  L              N F +    K    + 
Sbjct: 320 NNGKLEEAIDLWDKMVGLGLKPNIVTYNALI-------------NGFCKKKMMKEATKVF 366

Query: 466 MDMARNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEA 522
            D+++  +  + I+   ++ A   EGM+ E   L     D        TYN ++  L   
Sbjct: 367 DDVSKQELVPNVITFNTMIDAYCKEGMMEEGFSLCSSMLDEGILPNVSTYNCLIAGLCRK 426

Query: 523 QESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTY 582
           Q+   A E+  +M+  G+  +  TYNI+ID        ++A  L++ M   G  P  +TY
Sbjct: 427 QDLQAAKELLNEMENKGLKGDVVTYNILIDGLCKNDKSRNAEKLLNEMFNLGLKPNHVTY 486

Query: 583 TALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642
             L+      G    ALN+   +  E    +V+ YN ++K  C+  +++    ++ +M +
Sbjct: 487 NTLMDGYCMEGKLKAALNVRTRMEKERKQPNVVTYNVLIKGYCKINKLEAANGLLNEMLE 546

Query: 643 NKVQPDPSTCHFVFSGYVNCGF 664
             + P+ +T   V    +  GF
Sbjct: 547 KGLNPNRTTYDIVRLEMLEKGF 568



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 80/375 (21%), Positives = 156/375 (41%), Gaps = 23/375 (6%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           S + ++ A  +    G  E +  +M    +  + +T++ FI  +     L    + ++ M
Sbjct: 167 SCNPLLSALVKENKIGDVEYVYKEMIKRRIHTNLNTFNIFINGLCRAGKLNKAEDAIEDM 226

Query: 355 QQNNLKPQDSTIATL-SVECSK--ALELDLAEALLDQI---SRCTNPKPFSAFLAACDTM 408
           +   + P   T  TL    C +  A ++  AEA + ++     C N   F+  +      
Sbjct: 227 KAWGISPNVVTYNTLVDGYCKRGSAGKMYKAEAFMKEMLANKICPNEVTFNTLIDGFCKD 286

Query: 409 DKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMD 467
           +    A K F +M +Q L+P+I TY  L      +N     G +   +D   ++  + + 
Sbjct: 287 ENVAAAKKAFEEMQKQGLKPNIVTYNSL------INGLCNNGKLEEAIDLWDKMVGLGL- 339

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQE 524
             + NI    ++   L+     + M++E  + F D       P   T+NT++ +  +   
Sbjct: 340 --KPNI----VTYNALINGFCKKKMMKEATKVFDDVSKQELVPNVITFNTMIDAYCKEGM 393

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
                 +   M   GI PN +TYN +I      +  ++A  L++ M   G     +TY  
Sbjct: 394 MEEGFSLCSSMLDEGILPNVSTYNCLIAGLCRKQDLQAAKELLNEMENKGLKGDVVTYNI 453

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
           LI  L        A  LL+ +   G+  + + YNT++   C +G++     +  +M + +
Sbjct: 454 LIDGLCKNDKSRNAEKLLNEMFNLGLKPNHVTYNTLMDGYCMEGKLKAALNVRTRMEKER 513

Query: 645 VQPDPSTCHFVFSGY 659
            QP+  T + +  GY
Sbjct: 514 KQPNVVTYNVLIKGY 528



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 92/203 (45%), Gaps = 6/203 (2%)

Query: 485 KALGAEGMIRELI-QYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPN 543
           K   AE  ++E++    C ++      T+NT++    + +    A + F++M+  G+ PN
Sbjct: 253 KMYKAEAFMKEMLANKICPNEV-----TFNTLIDGFCKDENVAAAKKAFEEMQKQGLKPN 307

Query: 544 AATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLD 603
             TYN +I+        + A  L   MV  G  P  +TY ALI          EA  + D
Sbjct: 308 IVTYNSLINGLCNNGKLEEAIDLWDKMVGLGLKPNIVTYNALINGFCKKKMMKEATKVFD 367

Query: 604 LVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
            VS + +  +V+ +NT++   C++G ++    +   M    + P+ ST + + +G     
Sbjct: 368 DVSKQELVPNVITFNTMIDAYCKEGMMEEGFSLCSSMLDEGILPNVSTYNCLIAGLCRKQ 427

Query: 664 FHNSAMEALQVLSMRMLCEEVST 686
              +A E L  +  + L  +V T
Sbjct: 428 DLQAAKELLNEMENKGLKGDVVT 450



 Score = 43.9 bits (102), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 83/377 (22%), Positives = 153/377 (40%), Gaps = 38/377 (10%)

Query: 99  RSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYG--IYP 156
           ++ D +  M+ W       I  N   Y  ++   CK G   +      F+ E     I P
Sbjct: 218 KAEDAIEDMKAWG------ISPNVVTYNTLVDGYCKRGSAGKMYKAEAFMKEMLANKICP 271

Query: 157 ILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIW 216
               +N+ +    K  ++  A    + M  + +  N VTY  L+        L    ++W
Sbjct: 272 NEVTFNTLIDGFCKDENVAAAKKAFEEMQKQGLKPNIVTYNSLINGLCNNGKLEEAIDLW 331

Query: 217 EDY--------IKHYSLSI--FSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINR 266
           +          I  Y+  I  F  +K +   T++ D  S  E + +++    M   Y   
Sbjct: 332 DKMVGLGLKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQELVPNVITFNTMIDAYCKE 391

Query: 267 T--SEG-RLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLG 323
               EG  L SS LD  I    LP +     +++ +I    R Q+   A++L+ +M++ G
Sbjct: 392 GMMEEGFSLCSSMLDEGI----LPNVS----TYNCLIAGLCRKQDLQAAKELLNEMENKG 443

Query: 324 LQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAE 383
           L+    TY+  I  +  +   RN  ++L  M    LKP   T  TL       +E  L  
Sbjct: 444 LKGDVVTYNILIDGLCKNDKSRNAEKLLNEMFNLGLKPNHVTYNTLMD--GYCMEGKLKA 501

Query: 384 AL-----LDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELL-F 436
           AL     +++  +  N   ++  +     ++K E A  +  +M +K L P+  TY+++  
Sbjct: 502 ALNVRTRMEKERKQPNVVTYNVLIKGYCKINKLEAANGLLNEMLEKGLNPNRTTYDIVRL 561

Query: 437 SLFGNVNAPYEEGNMFS 453
            +     +P  EG++++
Sbjct: 562 EMLEKGFSPDIEGHLYN 578



 Score = 38.9 bits (89), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 34/156 (21%), Positives = 71/156 (45%), Gaps = 7/156 (4%)

Query: 513 NTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID-CCSIIRCFKSASALVSMMV 571
           N +L +LV+  +      ++K+M    I  N  T+NI I+  C   +  K+  A+  M  
Sbjct: 169 NPLLSALVKENKIGDVEYVYKEMIKRRIHTNLNTFNIFINGLCRAGKLNKAEDAIEDMKA 228

Query: 572 RDGFYPQTMTYTALIKILLDYGD----FDEALNLLDLVSLEGIPHDVLLYNTILKKACEK 627
             G  P  +TY  L+      G     +     + ++++ +  P++V  +NT++   C+ 
Sbjct: 229 W-GISPNVVTYNTLVDGYCKRGSAGKMYKAEAFMKEMLANKICPNEV-TFNTLIDGFCKD 286

Query: 628 GRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
             +   +   E+M +  ++P+  T + + +G  N G
Sbjct: 287 ENVAAAKKAFEEMQKQGLKPNIVTYNSLINGLCNNG 322


>gi|357499959|ref|XP_003620268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495283|gb|AES76486.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 652

 Score = 86.3 bits (212), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 82/343 (23%), Positives = 142/343 (41%), Gaps = 20/343 (5%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A  L  +M S G+ P   TY   I        L + +++   M   N+KP   T   L  
Sbjct: 244 AFDLFSEMISKGISPDVVTYSALISGFCILGKLNDAIDLFNKMILENIKPDVYTFNILVN 303

Query: 372 ECSKALELDLAEALLDQISRCTNPKPFSAFLAACDT---MDKPERAIKIFAKMRQK-LRP 427
              K  ++   + + D + +      F  + +  D    + +  +A  IF  M Q  + P
Sbjct: 304 AFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNP 363

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL 487
           DI++Y ++ + F  +    E  N+F +             M R NI    ++  +L+  L
Sbjct: 364 DIQSYSIMINGFCKIKKFDEAMNLFKE-------------MHRKNIIPDVVTYSSLIDGL 410

Query: 488 GAEGMIR---ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNA 544
              G I    +L+    D   P    TYN++L +L +  +  +A+ +  ++K  GI PN 
Sbjct: 411 SKSGRISYALQLVDQMHDRGVPPTIRTYNSILDALCKIHQVDKAIALLTKLKDKGIQPNM 470

Query: 545 ATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDL 604
            TY+I+I         + A  +   ++  G      TYT +I+     G F+EAL LL  
Sbjct: 471 YTYSILIKGLCQSGKLEDARKVFEGLLVKGHNLNVDTYTIMIQGFCVEGLFNEALALLSK 530

Query: 605 VSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
           +   G   D   Y  I+    +K   D+ E ++ +M    V+P
Sbjct: 531 MEDNGCIPDAKTYEIIILSLFKKDENDMAEKLLREMIARGVRP 573



 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 93/186 (50%), Gaps = 5/186 (2%)

Query: 478 ISMKNLLKALGAEGMIRELIQYFCDSKTPLG----TPTYNTVLHSLVEAQESHRAMEIFK 533
           I+   L+K L  +G I++    F D    LG      +Y T++H L +  E+  A+++ +
Sbjct: 156 ITFTTLIKGLCLKGQIQQAF-LFHDKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQ 214

Query: 534 QMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYG 593
           ++    + PN   YN +ID    ++    A  L S M+  G  P  +TY+ALI      G
Sbjct: 215 RVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYSALISGFCILG 274

Query: 594 DFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCH 653
             ++A++L + + LE I  DV  +N ++   C+ G++   + + + M +  ++P+  T +
Sbjct: 275 KLNDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYN 334

Query: 654 FVFSGY 659
            +  GY
Sbjct: 335 SLMDGY 340



 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 80/365 (21%), Positives = 150/365 (41%), Gaps = 49/365 (13%)

Query: 318 QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL-SVECSKA 376
           ++ +LG      +Y   I  +      R  +++L+ +  N ++P      T+    C   
Sbjct: 180 KVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVK 239

Query: 377 LELDLAEALLDQISRCTNPK--PFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYE 433
           L  +  +   + IS+  +P    +SA ++    + K   AI +F KM  + ++PD+ T+ 
Sbjct: 240 LVNEAFDLFSEMISKGISPDVVTYSALISGFCILGKLNDAIDLFNKMILENIKPDVYTFN 299

Query: 434 LLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMI 493
           +L      VNA  ++G M       K    +   M +  I+ + +               
Sbjct: 300 IL------VNAFCKDGKM-------KEGKTVFDMMMKQGIKPNFV--------------- 331

Query: 494 RELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC 553
                            TYN+++      +E ++A  IF  M   G+ P+  +Y+IMI+ 
Sbjct: 332 -----------------TYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMING 374

Query: 554 CSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHD 613
              I+ F  A  L   M R    P  +TY++LI  L   G    AL L+D +   G+P  
Sbjct: 375 FCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPT 434

Query: 614 VLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           +  YN+IL   C+  ++D    ++ ++    +QP+  T   +  G    G    A +  +
Sbjct: 435 IRTYNSILDALCKIHQVDKAIALLTKLKDKGIQPNMYTYSILIKGLCQSGKLEDARKVFE 494

Query: 674 VLSMR 678
            L ++
Sbjct: 495 GLLVK 499



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/175 (22%), Positives = 80/175 (45%)

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           YNT++ S+ + +  + A ++F +M + GI P+  TY+ +I    I+     A  L + M+
Sbjct: 228 YNTIIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYSALISGFCILGKLNDAIDLFNKMI 287

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
            +   P   T+  L+      G   E   + D++  +GI  + + YN+++   C    ++
Sbjct: 288 LENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVN 347

Query: 632 VIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
             + I   M Q  V PD  +   + +G+      + AM   + +  + +  +V T
Sbjct: 348 KAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVT 402



 Score = 69.3 bits (168), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 85/183 (46%)

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           +N +L SLV+++  H  + + ++M+  GI PN    NI+I+C   +     A ++ + ++
Sbjct: 88  FNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKIL 147

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
           + G+ P T+T+T LIK L   G   +A    D V   G   D + Y T++   C+ G   
Sbjct: 148 KMGYVPDTITFTTLIKGLCLKGQIQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVGETR 207

Query: 632 VIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKR 691
               +++++  N VQP+    + +          N A +    +  + +  +V T     
Sbjct: 208 AALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYSALI 267

Query: 692 SDF 694
           S F
Sbjct: 268 SGF 270



 Score = 39.7 bits (91), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 2/122 (1%)

Query: 107 METWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLG 166
           M  ++ M  K I  +   Y  ++  L K G +  A  L+  + +R G+ P +  YNS L 
Sbjct: 385 MNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDR-GVPPTIRTYNSILD 443

Query: 167 ACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWED-YIKHYSL 225
           A  K+H +  A   L  +  + +  N  TY+ L+K       L    +++E   +K ++L
Sbjct: 444 ALCKIHQVDKAIALLTKLKDKGIQPNMYTYSILIKGLCQSGKLEDARKVFEGLLVKGHNL 503

Query: 226 SI 227
           ++
Sbjct: 504 NV 505


>gi|225464790|ref|XP_002268064.1| PREDICTED: pentatricopeptide repeat-containing protein At2g26790,
           mitochondrial [Vitis vinifera]
          Length = 817

 Score = 86.3 bits (212), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 88/374 (23%), Positives = 153/374 (40%), Gaps = 26/374 (6%)

Query: 311 LAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLS 370
           +A  +   ++ LGL P+ +TY  FI+A+         ++V + M++  + P   T +T  
Sbjct: 210 MAVAIYRHLKRLGLNPNDYTYGIFIKALCRKGNFEEAVDVFREMEEAGVNPNAVTCSTYI 269

Query: 371 VECSKALELDLAEALLDQISRCTNPKPFSAFLAA----CDTMDKPERAIKIFAKM-RQKL 425
                    DL    L  +     P    A+ A     C  M K + A  +F  M  + +
Sbjct: 270 EGLCSHKRSDLGYEALRALRAANWPIDTFAYTAVIRGFCSEM-KLKEAEDVFIDMVNEGI 328

Query: 426 RPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLK 485
            PD   Y  L      ++A  + GN+   V       A+  DM  N I+ + + + ++L+
Sbjct: 329 APDGYIYGAL------IHAYCKAGNLLQAV-------ALHNDMVSNGIKTNCVIVSSILQ 375

Query: 486 ALGAEGMIRELI---QYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPP 542
            L   GM  E++   + F DS   L    YN V+ +L +  +   A+E+  +MK   +  
Sbjct: 376 CLCEMGMASEVVDQFKEFRDSGIFLDEVLYNIVVDALCKLGKVEEAVELLNEMKGRRMSL 435

Query: 543 NAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL 602
           +   Y  +I    +      A  +   M   G  P  +TY  L+      G   EAL LL
Sbjct: 436 DVVHYTTLIAGYCLQGKLVDAKNMFEEMKERGIEPDIVTYNILVGGFSRNGLKKEALELL 495

Query: 603 DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNC 662
           D +  +G+  +   +N I++  C  G++   E  +  + ++K   + S    +  GY   
Sbjct: 496 DCIGTQGLKPNSATHNRIIEGLCMAGKVKEAEAFLNTL-EDKCLENYSA---MVDGYCKA 551

Query: 663 GFHNSAMEALQVLS 676
            F   A E    LS
Sbjct: 552 NFTRKAYELFSRLS 565



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 79/369 (21%), Positives = 153/369 (41%), Gaps = 39/369 (10%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A+ +  +M+  G++P   TY+  +     +   +  +E+L  +    LKP  +T   +  
Sbjct: 456 AKNMFEEMKERGIEPDIVTYNILVGGFSRNGLKKEALELLDCIGTQGLKPNSATHNRIIE 515

Query: 372 ECSKALELDLAEALLDQI-SRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK--LRPD 428
               A ++  AEA L+ +  +C   + +SA +      +   +A ++F+++ ++  L   
Sbjct: 516 GLCMAGKVKEAEAFLNTLEDKCL--ENYSAMVDGYCKANFTRKAYELFSRLSKQGILVKK 573

Query: 429 IRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALG 488
              ++LL SL   +   Y++  +  +         + +D+  N I +       L+ A  
Sbjct: 574 KSCFKLLSSLC--MEGEYDKALILLE-------RMLALDVEPNQIMYG-----KLIGAFC 619

Query: 489 AEGMIRELIQYFCDSKTPLG-TP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNA 544
            +G ++   Q   D     G TP   TY  +++          A +IF  MK  GI P+ 
Sbjct: 620 RDGDMKR-AQLVFDMLVERGITPDVITYTMMINGYCRVNCLREARDIFNDMKERGIKPDV 678

Query: 545 ATYNIMIDCCSII-----RCFK----------SASALVSMMVRDGFYPQTMTYTALIKIL 589
            TY +++D  S +     R  +           AS   S M   G  P  + YT LI   
Sbjct: 679 ITYTVVLDGHSKVNLKMARSLQFSKGSEEEKMDASPFWSEMKEMGIKPDVVCYTVLIDSH 738

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649
               +  +A+NL D +   G+  D++ Y  +L   C +G +D    ++ +M    ++PD 
Sbjct: 739 CKTNNLQDAINLYDEMIARGLQPDIVTYTALLSSCCSRGDMDRAITLVNEMSFKGIEPDS 798

Query: 650 STCHFVFSG 658
                +  G
Sbjct: 799 RAMSVLHRG 807



 Score = 63.2 bits (152), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 114/521 (21%), Positives = 201/521 (38%), Gaps = 89/521 (17%)

Query: 119 GLNNKCYLL--MMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVH 176
           G+   C ++  ++Q LC+ G   E  +      +  GI+    +YN  + A  KL  +  
Sbjct: 362 GIKTNCVIVSSILQCLCEMGMASEVVDQFKEFRDS-GIFLDEVLYNIVVDALCKLGKVEE 420

Query: 177 ANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSL--SIFSLRKFV 234
           A   L+ M  R +  + V YT L+     Q  L     ++E+ +K   +   I +    V
Sbjct: 421 AVELLNEMKGRRMSLDVVHYTTLIAGYCLQGKLVDAKNMFEE-MKERGIEPDIVTYNILV 479

Query: 235 WSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRW 294
             F+R   LK   E L+ +  +   G L  N  +  R+                      
Sbjct: 480 GGFSR-NGLKK--EALELLDCIGTQG-LKPNSATHNRIIEG------------------- 516

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVL-KI 353
                +   G+ +    AE  +  ++   L+  S   DG+ +A  +    R   E+  ++
Sbjct: 517 -----LCMAGKVKE---AEAFLNTLEDKCLENYSAMVDGYCKANFT----RKAYELFSRL 564

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI-------SRCTNPKPFSAFLAACD 406
            +Q  L  + S    LS  C +  E D A  LL+++       ++    K   AF    D
Sbjct: 565 SKQGILVKKKSCFKLLSSLCMEG-EYDKALILLERMLALDVEPNQIMYGKLIGAFCRDGD 623

Query: 407 TMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIE 465
                +RA  +F  + ++ + PD+ TY ++ + +  VN   E  ++F+            
Sbjct: 624 M----KRAQLVFDMLVERGITPDVITYTMMINGYCRVNCLREARDIFN------------ 667

Query: 466 MDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQES 525
            DM    I+   I+   +L                 D  + +      ++  S    +E 
Sbjct: 668 -DMKERGIKPDVITYTVVL-----------------DGHSKVNLKMARSLQFSKGSEEEK 709

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
             A   + +MK  GI P+   Y ++ID        + A  L   M+  G  P  +TYTAL
Sbjct: 710 MDASPFWSEMKEMGIKPDVVCYTVLIDSHCKTNNLQDAINLYDEMIARGLQPDIVTYTAL 769

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHD----VLLYNTILK 622
           +      GD D A+ L++ +S +GI  D     +L+  ILK
Sbjct: 770 LSSCCSRGDMDRAITLVNEMSFKGIEPDSRAMSVLHRGILK 810



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 82/409 (20%), Positives = 165/409 (40%), Gaps = 35/409 (8%)

Query: 269 EGRLRSSRLDIPIPLNALPVMKVLRW-----SFSDVIHACGRTQNSGLAEQLMLQMQSLG 323
           EG     R D+     AL  ++   W     +++ VI           AE + + M + G
Sbjct: 270 EGLCSHKRSDLG--YEALRALRAANWPIDTFAYTAVIRGFCSEMKLKEAEDVFIDMVNEG 327

Query: 324 LQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAE 383
           + P  + Y   I A      L   + +   M  N +K     ++++ ++C    E+ +A 
Sbjct: 328 IAPDGYIYGALIHAYCKAGNLLQAVALHNDMVSNGIKTNCVIVSSI-LQC--LCEMGMAS 384

Query: 384 ALLDQISRCTNPKPF------SAFLAACDTMDKPERAIKIFAKMR-QKLRPDIRTYELLF 436
            ++DQ     +   F      +  + A   + K E A+++  +M+ +++  D+  Y  L 
Sbjct: 385 EVVDQFKEFRDSGIFLDEVLYNIVVDALCKLGKVEEAVELLNEMKGRRMSLDVVHYTTLI 444

Query: 437 SLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIREL 496
           + +       +  NMF ++        IE D+   NI     S   L K    E +  EL
Sbjct: 445 AGYCLQGKLVDAKNMFEEMKE----RGIEPDIVTYNILVGGFSRNGLKK----EAL--EL 494

Query: 497 IQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSI 556
           +           + T+N ++  L  A +   A      ++   +      Y+ M+D    
Sbjct: 495 LDCIGTQGLKPNSATHNRIIEGLCMAGKVKEAEAFLNTLEDKCLE----NYSAMVDGYCK 550

Query: 557 IRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLD-LVSLEGIPHDVL 615
               + A  L S + + G   +  +   L+  L   G++D+AL LL+ +++L+  P+ + 
Sbjct: 551 ANFTRKAYELFSRLSKQGILVKKKSCFKLLSSLCMEGEYDKALILLERMLALDVEPNQI- 609

Query: 616 LYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY--VNC 662
           +Y  ++   C  G +   + + + + +  + PD  T   + +GY  VNC
Sbjct: 610 MYGKLIGAFCRDGDMKRAQLVFDMLVERGITPDVITYTMMINGYCRVNC 658



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/205 (21%), Positives = 91/205 (44%), Gaps = 11/205 (5%)

Query: 483 LLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCG 539
           +++   +E  ++E    F D       P    Y  ++H+  +A    +A+ +   M + G
Sbjct: 303 VIRGFCSEMKLKEAEDVFIDMVNEGIAPDGYIYGALIHAYCKAGNLLQAVALHNDMVSNG 362

Query: 540 IPPNAATYNIMIDC-CSIIRCFKSASALVSMM--VRD-GFYPQTMTYTALIKILLDYGDF 595
           I  N    + ++ C C +      AS +V      RD G +   + Y  ++  L   G  
Sbjct: 363 IKTNCVIVSSILQCLCEM----GMASEVVDQFKEFRDSGIFLDEVLYNIVVDALCKLGKV 418

Query: 596 DEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFV 655
           +EA+ LL+ +    +  DV+ Y T++   C +G++   + + E+M +  ++PD  T + +
Sbjct: 419 EEAVELLNEMKGRRMSLDVVHYTTLIAGYCLQGKLVDAKNMFEEMKERGIEPDIVTYNIL 478

Query: 656 FSGYVNCGFHNSAMEALQVLSMRML 680
             G+   G    A+E L  +  + L
Sbjct: 479 VGGFSRNGLKKEALELLDCIGTQGL 503



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/184 (22%), Positives = 71/184 (38%), Gaps = 3/184 (1%)

Query: 483 LLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCG 539
           L+KA    GM  E I     +K     P   + N +++ L+E  +   A+ I++ +K  G
Sbjct: 163 LVKAYVRVGMFDEAIDALFQTKRRGFVPHIMSCNFLMNRLIEHGKIDMAVAIYRHLKRLG 222

Query: 540 IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEAL 599
           + PN  TY I I        F+ A  +   M   G  P  +T +  I+ L  +   D   
Sbjct: 223 LNPNDYTYGIFIKALCRKGNFEEAVDVFREMEEAGVNPNAVTCSTYIEGLCSHKRSDLGY 282

Query: 600 NLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
             L  +     P D   Y  +++  C + ++   E +   M    + PD      +   Y
Sbjct: 283 EALRALRAANWPIDTFAYTAVIRGFCSEMKLKEAEDVFIDMVNEGIAPDGYIYGALIHAY 342

Query: 660 VNCG 663
              G
Sbjct: 343 CKAG 346



 Score = 43.9 bits (102), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 26/104 (25%), Positives = 45/104 (43%)

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
           R GF P  M+   L+  L+++G  D A+ +   +   G+  +   Y   +K  C KG  +
Sbjct: 185 RRGFVPHIMSCNFLMNRLIEHGKIDMAVAIYRHLKRLGLNPNDYTYGIFIKALCRKGNFE 244

Query: 632 VIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
               +  +M +  V P+  TC     G  +    +   EAL+ L
Sbjct: 245 EAVDVFREMEEAGVNPNAVTCSTYIEGLCSHKRSDLGYEALRAL 288


>gi|356529689|ref|XP_003533421.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Glycine max]
          Length = 892

 Score = 86.3 bits (212), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 80/366 (21%), Positives = 151/366 (41%), Gaps = 14/366 (3%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTI-ATLS 370
           A  L  +M+  G +P+ +TY   I  +  +  +   +++L  M +  + P      A + 
Sbjct: 309 ALSLFGEMRERGCEPNVYTYTVLIDYLCKEGRMDEALKMLNEMVEKGVAPSVVPFNALIG 368

Query: 371 VECSKALELDLAE--ALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRP 427
             C + +  D      L++    C N + ++  +         +RA+ +  KM + KL P
Sbjct: 369 SYCKRGMMEDAVGVLGLMESKKVCPNVRTYNELICGFCRGKSMDRAMALLNKMVESKLSP 428

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL 487
           D+ TY  L      V            VDSA R+  + +    +  Q +  +    L  +
Sbjct: 429 DVVTYNTLIHGLCEVGV----------VDSASRLFRLMIRDGFSPDQWTFNAFMVCLCRM 478

Query: 488 GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATY 547
           G  G   ++++   +         Y  ++    +A +   A  +FK+M      PN+ T+
Sbjct: 479 GRVGEAHQILESLKEKHVKANEHAYTALIDGYCKAGKIEHAASLFKRMLAEECLPNSITF 538

Query: 548 NIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSL 607
           N+MID        + A  LV  M +    P   TY  L++ +L   DFD A  +L+ +  
Sbjct: 539 NVMIDGLRKEGKVQDAMLLVEDMAKFDVKPTLHTYNILVEEVLKEYDFDRANEILNRLIS 598

Query: 608 EGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNS 667
            G   +V+ Y   +K  C +GR++  E ++ ++    V  D    + + + Y   G  +S
Sbjct: 599 SGYQPNVVTYTAFIKAYCSQGRLEEAEEMVIKIKNEGVLLDSFIYNLLINAYGCMGLLDS 658

Query: 668 AMEALQ 673
           A   L+
Sbjct: 659 AFGVLR 664



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/275 (22%), Positives = 116/275 (42%), Gaps = 26/275 (9%)

Query: 410 KPERAIKIFAKMRQK-LRPDIRTYELL-------------FSLFGNVNAPYEEGNMFSQV 455
           K   A++ +A+MR+    P +RTY +L              SLFG +     E N+++  
Sbjct: 270 KLHEALEFWARMREDGCFPTVRTYTVLVCALCESGRELEALSLFGEMRERGCEPNVYTYT 329

Query: 456 -------DSAKRINAIEM--DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTP 506
                     +   A++M  +M    +  S +    L+ +    GM+ + +      ++ 
Sbjct: 330 VLIDYLCKEGRMDEALKMLNEMVEKGVAPSVVPFNALIGSYCKRGMMEDAVGVLGLMESK 389

Query: 507 LGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSA 563
              P   TYN ++      +   RAM +  +M    + P+  TYN +I     +    SA
Sbjct: 390 KVCPNVRTYNELICGFCRGKSMDRAMALLNKMVESKLSPDVVTYNTLIHGLCEVGVVDSA 449

Query: 564 SALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKK 623
           S L  +M+RDGF P   T+ A +  L   G   EA  +L+ +  + +  +   Y  ++  
Sbjct: 450 SRLFRLMIRDGFSPDQWTFNAFMVCLCRMGRVGEAHQILESLKEKHVKANEHAYTALIDG 509

Query: 624 ACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
            C+ G+I+    + ++M   +  P+  T + +  G
Sbjct: 510 YCKAGKIEHAASLFKRMLAEECLPNSITFNVMIDG 544



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 85/178 (47%), Gaps = 4/178 (2%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKS--ASALVS 568
           +Y  ++H L EA + H A+E + +M+  G  P   TY +++  C++    +   A +L  
Sbjct: 257 SYTNLIHGLCEAGKLHEALEFWARMREDGCFPTVRTYTVLV--CALCESGRELEALSLFG 314

Query: 569 MMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
            M   G  P   TYT LI  L   G  DEAL +L+ +  +G+   V+ +N ++   C++G
Sbjct: 315 EMRERGCEPNVYTYTVLIDYLCKEGRMDEALKMLNEMVEKGVAPSVVPFNALIGSYCKRG 374

Query: 629 RIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
            ++    ++  M   KV P+  T + +  G+      + AM  L  +    L  +V T
Sbjct: 375 MMEDAVGVLGLMESKKVCPNVRTYNELICGFCRGKSMDRAMALLNKMVESKLSPDVVT 432



 Score = 72.4 bits (176), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 54/228 (23%), Positives = 104/228 (45%), Gaps = 9/228 (3%)

Query: 452 FSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPT 511
           + + D  +R   +   M R N     +S  NL+  L   G + E ++++   +     PT
Sbjct: 234 YCRNDDVERACGVFCVMPRRNA----VSYTNLIHGLCEAGKLHEALEFWARMREDGCFPT 289

Query: 512 ---YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID-CCSIIRCFKSASALV 567
              Y  ++ +L E+     A+ +F +M+  G  PN  TY ++ID  C   R    A  ++
Sbjct: 290 VRTYTVLVCALCESGRELEALSLFGEMRERGCEPNVYTYTVLIDYLCKEGR-MDEALKML 348

Query: 568 SMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEK 627
           + MV  G  P  + + ALI      G  ++A+ +L L+  + +  +V  YN ++   C  
Sbjct: 349 NEMVEKGVAPSVVPFNALIGSYCKRGMMEDAVGVLGLMESKKVCPNVRTYNELICGFCRG 408

Query: 628 GRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
             +D    ++ +M ++K+ PD  T + +  G    G  +SA    +++
Sbjct: 409 KSMDRAMALLNKMVESKLSPDVVTYNTLIHGLCEVGVVDSASRLFRLM 456



 Score = 56.2 bits (134), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 75/180 (41%), Gaps = 6/180 (3%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPP-NAATYNIMIDCCSIIRCFKSASALVSM 569
           TY +++       +  RA  +F     C +P  NA +Y  +I           A    + 
Sbjct: 226 TYTSLVLGYCRNDDVERACGVF-----CVMPRRNAVSYTNLIHGLCEAGKLHEALEFWAR 280

Query: 570 MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
           M  DG +P   TYT L+  L + G   EAL+L   +   G   +V  Y  ++   C++GR
Sbjct: 281 MREDGCFPTVRTYTVLVCALCESGRELEALSLFGEMRERGCEPNVYTYTVLIDYLCKEGR 340

Query: 630 IDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEE 689
           +D    ++ +M +  V P     + +   Y   G    A+  L ++  + +C  V T  E
Sbjct: 341 MDEALKMLNEMVEKGVAPSVVPFNALIGSYCKRGMMEDAVGVLGLMESKKVCPNVRTYNE 400



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 125/621 (20%), Positives = 231/621 (37%), Gaps = 116/621 (18%)

Query: 107 METWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGER--------------- 151
           +E W  M E       + Y +++ ALC+ G   EA +L   + ER               
Sbjct: 275 LEFWARMREDGCFPTVRTYTVLVCALCESGRELEALSLFGEMRERGCEPNVYTYTVLIDY 334

Query: 152 -------------------YGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKN 192
                               G+ P +  +N+ +G+  K   M  A   L LM+S+ V  N
Sbjct: 335 LCKEGRMDEALKMLNEMVEKGVAPSVVPFNALIGSYCKRGMMEDAVGVLGLMESKKVCPN 394

Query: 193 EVTYTELLKLAVWQKNLSAVHEIWEDYIK-HYSLSIFSLRKFVWSFTRLRDLKSAYETLQ 251
             TY EL+      K++     +    ++   S  + +    +     +  + SA    +
Sbjct: 395 VRTYNELICGFCRGKSMDRAMALLNKMVESKLSPDVVTYNTLIHGLCEVGVVDSASRLFR 454

Query: 252 ----------------HMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWS 295
                            MV L  MG++         L+   +            K    +
Sbjct: 455 LMIRDGFSPDQWTFNAFMVCLCRMGRVGEAHQILESLKEKHV------------KANEHA 502

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           ++ +I    +      A  L  +M +    P+S T++  I  +  +  +++ M +++ M 
Sbjct: 503 YTALIDGYCKAGKIEHAASLFKRMLAEECLPNSITFNVMIDGLRKEGKVQDAMLLVEDMA 562

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPK--PFSAFLAACDTMDKPE 412
           + ++KP   T   L  E  K  + D A  +L++ IS    P    ++AF+ A  +  + E
Sbjct: 563 KFDVKPTLHTYNILVEEVLKEYDFDRANEILNRLISSGYQPNVVTYTAFIKAYCSQGRLE 622

Query: 413 RAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471
            A ++  K++ + +  D   Y LL + +G              +DSA     +   M   
Sbjct: 623 EAEEMVIKIKNEGVLLDSFIYNLLINAYG----------CMGLLDSAF---GVLRRMFGT 669

Query: 472 NIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTY-------NTVLHSLVEAQE 524
             + S+++   L+K L  E   +E          P+G           NT + S ++   
Sbjct: 670 GCEPSYLTYSILMKHLVIEKHKKE-------GSNPVGLDVSLTNISVDNTDIWSKIDFGI 722

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
           +     +F++M  CG  PN  TY+ +I+    +     A +L   M   G  P  + + +
Sbjct: 723 T---TVLFEKMAECGCVPNLNTYSKLINGLCKVGRLNVAFSLYHHMREGGISPSEIIHNS 779

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
           L+      G F EA+ LLD  S+    H   L +  L          +I  + EQM++ K
Sbjct: 780 LLSSCCKLGMFGEAVTLLD--SMMECSHLAHLESYKL----------LICGLFEQMNKEK 827

Query: 645 VQPDPSTCHFVFSGYVNCGFH 665
            +        VF   + CG++
Sbjct: 828 AEA-------VFCSLLRCGYN 841



 Score = 45.4 bits (106), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 79/377 (20%), Positives = 143/377 (37%), Gaps = 32/377 (8%)

Query: 62  ALCR-GERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGL 120
            LCR G    A  +L +L   H       +  +++   ++         ++ M  +E   
Sbjct: 474 CLCRMGRVGEAHQILESLKEKHVKANEHAYTALIDGYCKAGKIEHAASLFKRMLAEECLP 533

Query: 121 NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLC 180
           N+  + +M+  L K G +++A  L+  +  ++ + P L  YN  +    K +    AN  
Sbjct: 534 NSITFNVMIDGLRKEGKVQDAMLLVEDMA-KFDVKPTLHTYNILVEEVLKEYDFDRANEI 592

Query: 181 LDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYS--LSIFSLRKFVWSFT 238
           L+ + S     N VTYT  +K    Q  L    E+    IK+    L  F     + ++ 
Sbjct: 593 LNRLISSGYQPNVVTYTAFIKAYCSQGRLEEAEEMVIK-IKNEGVLLDSFIYNLLINAYG 651

Query: 239 RLRDLKSAYETLQHMVALA----------MMGKLYINR-TSEGRLRSSRLDIPIPLNALP 287
            +  L SA+  L+ M              +M  L I +   EG   S+ + + + L  + 
Sbjct: 652 CMGLLDSAFGVLRRMFGTGCEPSYLTYSILMKHLVIEKHKKEG---SNPVGLDVSLTNIS 708

Query: 288 VMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNG 347
           V     WS  D           G+   L  +M   G  P+ +TY   I  +     L   
Sbjct: 709 VDNTDIWSKIDF----------GITTVLFEKMAECGCVPNLNTYSKLINGLCKVGRLNVA 758

Query: 348 MEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAF-LAACD 406
             +   M++  + P +    +L   C K      A  LLD +  C++     ++ L  C 
Sbjct: 759 FSLYHHMREGGISPSEIIHNSLLSSCCKLGMFGEAVTLLDSMMECSHLAHLESYKLLICG 818

Query: 407 TMDK--PERAIKIFAKM 421
             ++   E+A  +F  +
Sbjct: 819 LFEQMNKEKAEAVFCSL 835


>gi|49387750|dbj|BAD26238.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|218190136|gb|EEC72563.1| hypothetical protein OsI_05996 [Oryza sativa Indica Group]
          Length = 803

 Score = 86.3 bits (212), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 69/323 (21%), Positives = 146/323 (45%), Gaps = 20/323 (6%)

Query: 348 MEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDT 407
           +EVL +MQ+   +P + T + L   C KA ++  A A+ D+ISR  +   ++  L+    
Sbjct: 336 VEVLSLMQEAGFEPNEVTYSNLLASCIKARDVHSARAMFDKISR-PSVTTWNTLLSGYCQ 394

Query: 408 MDKPERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM 466
            ++ +  I++F +M+ Q ++PD  T  ++ S            +    +D  +++++  +
Sbjct: 395 EEQHQDTIELFRRMQHQNVQPDRTTLAVILS----------SCSKLGILDFGRQVHSASV 444

Query: 467 DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESH 526
               +N       + ++    G  G+ R +     +  T      +N+++  L     + 
Sbjct: 445 RFLLHNDMFVASGLVDMYSKCGQIGIARSIF----NKMTERDVVCWNSIISGLTIHSLNK 500

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
            A + FKQM+  GI P  ++Y  MI+ CS +        + + +++DG+       +ALI
Sbjct: 501 EAFDFFKQMRENGIMPTESSYASMINSCSRLSSIPHGRQIHAQVMKDGYDQNVYVGSALI 560

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
            +    G+ D+A    D + ++    +++ +N ++    + G  D    + E M   + +
Sbjct: 561 DMYAKCGNMDDARLFFDTMMMK----NIVAWNEMIHGYAQNGLGDKAVELFEYMLTTEQK 616

Query: 647 PDPSTCHFVFSGYVNCGFHNSAM 669
           PD  T   V +G  + G  + AM
Sbjct: 617 PDAVTFIAVLTGCSHSGLVDKAM 639



 Score = 50.1 bits (118), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 77/377 (20%), Positives = 143/377 (37%), Gaps = 50/377 (13%)

Query: 283 LNALPVMKVLRWSFSDVIHACGRT-QNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSD 341
           L  +P    + W+   VI A  R+  + G A ++  +M++ GL P+  T    + A    
Sbjct: 97  LGGMPRRNAVSWN--TVISALARSPGDGGEAVEMYGRMRAEGLLPTHFTLASVLSACGGL 154

Query: 342 RGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAF 401
             L +G     +  +  L         L    +K   +  A  L   ++R  N   F+A 
Sbjct: 155 AALGDGRRCHGVAVKVGLDANQFVENALLGMYTKCGSVGDAVRLFYGMAR-PNEVSFTAM 213

Query: 402 LAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI 461
           +         + A+++FA+M +                     P +  ++ S + +  + 
Sbjct: 214 MGGLAQTGSIDDALRLFARMCRS------------------GVPVDPVSVSSVLGACAQA 255

Query: 462 NAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVE 521
            A +  +AR       I    + K  G++  +                   N+++    +
Sbjct: 256 CATDYSVARAFRLGQAIHALVVRKGFGSDQHVG------------------NSLIDMYTK 297

Query: 522 AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMT 581
             E   A+++F+ + +  I     ++NI+I           A  ++S+M   GF P  +T
Sbjct: 298 CVEMDEAVKVFESLPSVTI----VSWNILITGFGQEGSCAKAVEVLSLMQEAGFEPNEVT 353

Query: 582 YTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKAC-EKGRIDVIEFIIEQM 640
           Y+ L+   +   D   A  + D +S       V  +NT+L   C E+   D IE      
Sbjct: 354 YSNLLASCIKARDVHSARAMFDKISRP----SVTTWNTLLSGYCQEEQHQDTIELFRRMQ 409

Query: 641 HQNKVQPDPSTCHFVFS 657
           HQN VQPD +T   + S
Sbjct: 410 HQN-VQPDRTTLAVILS 425



 Score = 48.1 bits (113), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 86/466 (18%), Positives = 167/466 (35%), Gaps = 93/466 (19%)

Query: 283 LNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDR 342
             +LP + ++ W+   +I   G+  +   A +++  MQ  G +P+  TY   + + +  R
Sbjct: 308 FESLPSVTIVSWNI--LITGFGQEGSCAKAVEVLSLMQEAGFEPNEVTYSNLLASCIKAR 365

Query: 343 GL-------------------------------RNGMEVLKIMQQNNLKPQDSTIATLSV 371
            +                               ++ +E+ + MQ  N++P  +T+A +  
Sbjct: 366 DVHSARAMFDKISRPSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVILS 425

Query: 372 ECSKALELD-------------------LAEALLDQISRCT---------------NPKP 397
            CSK   LD                   +A  L+D  S+C                +   
Sbjct: 426 SCSKLGILDFGRQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNKMTERDVVC 485

Query: 398 FSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVD 456
           +++ ++        + A   F +MR+  + P   +Y  +              N  S++ 
Sbjct: 486 WNSIISGLTIHSLNKEAFDFFKQMRENGIMPTESSYASMI-------------NSCSRLS 532

Query: 457 SAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVL 516
           S      I   + ++    +      L+      G + +   +F D+        +N ++
Sbjct: 533 SIPHGRQIHAQVMKDGYDQNVYVGSALIDMYAKCGNMDDARLFF-DTMMMKNIVAWNEMI 591

Query: 517 HSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRD-GF 575
           H   +     +A+E+F+ M T    P+A T+  ++  CS       A A  + M    G 
Sbjct: 592 HGYAQNGLGDKAVELFEYMLTTEQKPDAVTFIAVLTGCSHSGLVDKAMAFFNSMENSYGI 651

Query: 576 YPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIP--HDVLLYNTILKKACEKGRIDVI 633
            P    YT LI  L   G F E   L+  +  +  P   +VLL   ++    E G+    
Sbjct: 652 IPLAEHYTCLIDALGRAGRFVEVEALIHKMPCKDDPIIWEVLLAACVVHHNAELGK---- 707

Query: 634 EFIIEQMHQNKVQP-DPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678
                  H  ++ P +PS    + + Y + G H  A     ++S R
Sbjct: 708 ---CAAEHLFRIDPKNPSPYVLLSNIYASLGRHGDASAVRALMSNR 750



 Score = 47.0 bits (110), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 57/289 (19%), Positives = 121/289 (41%), Gaps = 27/289 (9%)

Query: 361 PQD-STIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFA 419
           P D S  A LS  C +A +LD A  LL  + R       +   A   +      A++++ 
Sbjct: 72  PNDYSYNAALSAAC-RAGDLDAARDLLGGMPRRNAVSWNTVISALARSPGDGGEAVEMYG 130

Query: 420 KMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHI 478
           +MR + L P   T   + S  G + A          +   +R + + + +  +  Q    
Sbjct: 131 RMRAEGLLPTHFTLASVLSACGGLAA----------LGDGRRCHGVAVKVGLDANQFVEN 180

Query: 479 SMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTC 538
           ++  +    G+ G   + ++ F     P    ++  ++  L +      A+ +F +M   
Sbjct: 181 ALLGMYTKCGSVG---DAVRLFYGMARP-NEVSFTAMMGGLAQTGSIDDALRLFARMCRS 236

Query: 539 GIPPNAATYNIMIDCC--------SIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590
           G+P +  + + ++  C        S+ R F+   A+ +++VR GF        +LI +  
Sbjct: 237 GVPVDPVSVSSVLGACAQACATDYSVARAFRLGQAIHALVVRKGFGSDQHVGNSLIDMYT 296

Query: 591 DYGDFDEALNLLD-LVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIE 638
              + DEA+ + + L S+  +  ++L+     + +C K  ++V+  + E
Sbjct: 297 KCVEMDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKA-VEVLSLMQE 344


>gi|357130032|ref|XP_003566662.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 859

 Score = 86.3 bits (212), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 96/418 (22%), Positives = 163/418 (38%), Gaps = 58/418 (13%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           SF+ VIH   +      A  L+ +M   G++P   TY+  + A+   R +     VL+ M
Sbjct: 266 SFNTVIHGFFKQGEVSKACNLINEMVQKGVEPDVVTYNSIVDALCKARAMDKAELVLRQM 325

Query: 355 QQNNLKPQDSTIATL--SVECSKALELDLAEALLDQISRCTNPK--PFSAFLAACDTMDK 410
               ++P   T   +     CS   + + A+      S+   P    F++F+++     +
Sbjct: 326 VDKGVEPDGLTYTAIIHGYSCSGHWK-ESAKMFRKMTSKGLIPGIVTFNSFMSSLCKHGR 384

Query: 411 PERAIKIFAKMRQKLR-PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
            + A +IF  M  K   PD+ +Y +L   +       +  N+F               MA
Sbjct: 385 SKDAEEIFQYMTTKGHMPDLVSYSILLHGYATEGRFADMNNLFHS-------------MA 431

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESH 526
              I  +      L+ A    GM+ E +  F + +     P   TY+T++ +        
Sbjct: 432 DKGIVANCHCFNILISAHAKRGMMDEAMLVFTEMQGQGVRPDVVTYSTLISAFCRMGRLA 491

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDG-------FY--- 576
            AME F QM + G+ PN   Y+ +I    +      A  LVS M+  G       F+   
Sbjct: 492 DAMEKFSQMISIGLEPNTVVYHSLIHGFCMHGDLVKAKELVSEMMSKGIPRPNIVFFSSI 551

Query: 577 --------------------------PQTMTYTALIKILLDYGDFDEALNLLDLVSLEGI 610
                                     P  +T+ +LI      G  ++A  +LD +   GI
Sbjct: 552 IHSLCNEGRVMDAHDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGI 611

Query: 611 PHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSA 668
             DV+ YNT++   C+ G+ID    +  +M   KV+P   T   V  G  + G  ++A
Sbjct: 612 EPDVVTYNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYSIVLDGLFHAGRTSAA 669



 Score = 69.3 bits (168), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 151/744 (20%), Positives = 281/744 (37%), Gaps = 123/744 (16%)

Query: 4   PLLRTRFQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDAL 63
           PL    + ++ D  C++      RR        +R L    GL   +I   T ++    L
Sbjct: 153 PLSVHTYGILMDCCCRA------RRPDLGPAFFARLLRA--GLRTRTIEANTFLK---CL 201

Query: 64  CRGERSRAS-----HLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEI 118
           C  +R+  +     H + +LG   +++  +     L   +RS + L +++  RM +E   
Sbjct: 202 CHAKRTDEAVDVLLHRMSDLGCVPNAISYNTVIKSLCGDSRSQEALDMVQ--RMAKE--- 256

Query: 119 GLNNKC------YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
               +C      +  ++    K G + +A NLI  + ++ G+ P +  YNS + A  K  
Sbjct: 257 --GGRCSPDVVSFNTVIHGFFKQGEVSKACNLINEMVQK-GVEPDVVTYNSIVDALCKAR 313

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELLK----LAVWQKNLSAVHEIWEDYIKHYSLSIF 228
           +M  A L L  M  + V  + +TYT ++        W+++     ++     K     I 
Sbjct: 314 AMDKAELVLRQMVDKGVEPDGLTYTAIIHGYSCSGHWKESAKMFRKMTS---KGLIPGIV 370

Query: 229 SLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYI------NRTSEGR------LRSSR 276
           +   F+ S  +    K A E  Q+M     M  L           +EGR      L  S 
Sbjct: 371 TFNSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDLVSYSILLHGYATEGRFADMNNLFHSM 430

Query: 277 LDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLML---QMQSLGLQPSSHTYDG 333
            D  I  N           F+ +I A  +    G+ ++ ML   +MQ  G++P   TY  
Sbjct: 431 ADKGIVANC--------HCFNILISAHAK---RGMMDEAMLVFTEMQGQGVRPDVVTYST 479

Query: 334 FIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEA--LLDQISR 391
            I A      L + ME    M    L+P  +T+   S+     +  DL +A  L+ ++  
Sbjct: 480 LISAFCRMGRLADAMEKFSQMISIGLEP--NTVVYHSLIHGFCMHGDLVKAKELVSEMMS 537

Query: 392 CTNPKPFSAFLAA-----CD----------------TMDKP------------------E 412
              P+P   F ++     C+                  D+P                  E
Sbjct: 538 KGIPRPNIVFFSSIIHSLCNEGRVMDAHDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKME 597

Query: 413 RAIKIF-AKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471
           +A  +  A +   + PD+ TY  L S +   +   ++G +  +            +M   
Sbjct: 598 KAFGVLDAMVSVGIEPDVVTYNTLVSGYCK-SGKIDDGLILFR------------EMLHK 644

Query: 472 NIQHSHISMKNLLKAL---GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRA 528
            ++ + ++   +L  L   G     +++     DS T +   TY  +L  L     +  A
Sbjct: 645 KVKPTTVTYSIVLDGLFHAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKGLCRNDLTDEA 704

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
           + +F ++       +    N +I+    +R  + A+ L + +   G  P   TY  +I  
Sbjct: 705 ITLFHKLGAMDCKFDITILNTVINALYKVRRREEANDLFAAISTSGLVPNVSTYGVMIHN 764

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
           LL  G  +EA  +   +   G      L N I++   +KG I    + + ++    +  +
Sbjct: 765 LLKEGSVEEADTMFSSMEKSGCAPSSRLLNDIIRMLLQKGDIVKAGYYMSKVDGTIISLE 824

Query: 649 PSTCHFVFSGYVNCGFHNSAMEAL 672
            ST   + S + + G H   ++ L
Sbjct: 825 ASTTSLLMSLFSSKGKHREQIKFL 848



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 78/396 (19%), Positives = 160/396 (40%), Gaps = 28/396 (7%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           ++  ++  C R +   L      ++   GL+  +   + F++ +   +     ++VL   
Sbjct: 158 TYGILMDCCCRARRPDLGPAFFARLLRAGLRTRTIEANTFLKCLCHAKRTDEAVDVLLHR 217

Query: 355 QQN-----NLKPQDSTIATLSVECSKALELDLAEALLDQISRCT-NPKPFSAFLAACDTM 408
             +     N    ++ I +L  +      LD+ + +  +  RC+ +   F+  +      
Sbjct: 218 MSDLGCVPNAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTVIHGFFKQ 277

Query: 409 DKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMD 467
            +  +A  +  +M QK + PD+ TY  +        A          +D A+    +   
Sbjct: 278 GEVSKACNLINEMVQKGVEPDVVTYNSIVDALCKARA----------MDKAE---LVLRQ 324

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRELIQYF--CDSKTPL-GTPTYNTVLHSLVEAQE 524
           M    ++   ++   ++      G  +E  + F    SK  + G  T+N+ + SL +   
Sbjct: 325 MVDKGVEPDGLTYTAIIHGYSCSGHWKESAKMFRKMTSKGLIPGIVTFNSFMSSLCKHGR 384

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
           S  A EIF+ M T G  P+  +Y+I++   +    F   + L   M   G       +  
Sbjct: 385 SKDAEEIFQYMTTKGHMPDLVSYSILLHGYATEGRFADMNNLFHSMADKGIVANCHCFNI 444

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI-DVIEFIIEQMHQN 643
           LI      G  DEA+ +   +  +G+  DV+ Y+T++   C  GR+ D +E    QM   
Sbjct: 445 LISAHAKRGMMDEAMLVFTEMQGQGVRPDVVTYSTLISAFCRMGRLADAME-KFSQMISI 503

Query: 644 KVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRM 679
            ++P+    H +  G+     H   ++A +++S  M
Sbjct: 504 GLEPNTVVYHSLIHGFC---MHGDLVKAKELVSEMM 536



 Score = 47.4 bits (111), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 74/174 (42%), Gaps = 15/174 (8%)

Query: 505 TPLGTPTYNTVLHSLVEAQESHR-------AMEIFKQMKTCGIPPNAA-----TYNIMID 552
           TP+  P  N  L +L  A +S          + +F ++      P  A     TY I++D
Sbjct: 105 TPVHNPALNGFLAALARAPDSVSCSNGPALVLALFNRICREEAGPRVAPLSVHTYGILMD 164

Query: 553 CCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALN-LLDLVSLEGIP 611
           CC   R      A  + ++R G   +T+     +K L      DEA++ LL  +S  G  
Sbjct: 165 CCCRARRPDLGPAFFARLLRAGLRTRTIEANTFLKCLCHAKRTDEAVDVLLHRMSDLGCV 224

Query: 612 HDVLLYNTILKKACEKGRIDVIEFIIEQMHQ--NKVQPDPSTCHFVFSGYVNCG 663
            + + YNT++K  C   R      ++++M +   +  PD  + + V  G+   G
Sbjct: 225 PNAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTVIHGFFKQG 278


>gi|449507709|ref|XP_004163108.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 999

 Score = 86.3 bits (212), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 140/704 (19%), Positives = 267/704 (37%), Gaps = 131/704 (18%)

Query: 55  TQMQIVDALCRGERSRASHLL--------LNLGHAHHSLGADDFFHILNYCARSPDPLFV 106
           T   +VD  C+ +RS+ + L+        LN     ++   D F    N          +
Sbjct: 313 TYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGN----------I 362

Query: 107 METWRMMEE---KEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNS 163
            E  R+ +E   + + LN   Y  M+  + K G + +A +L   +    GI P    YN 
Sbjct: 363 EEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEM-LMAGIEPDTWTYNL 421

Query: 164 FLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH- 222
            +    K H M  A   L  M +R +  +  TY+ L+       +L   +E+ +  I++ 
Sbjct: 422 LIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNG 481

Query: 223 YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIP 282
              ++F     + ++ +    + A E L+ M+A  ++  L+                   
Sbjct: 482 VKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFC------------------ 523

Query: 283 LNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDR 342
            N L            +I  C R +    A+ L++ M   G++P++HTY  FI       
Sbjct: 524 YNCL------------IIGLC-RAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSG 570

Query: 343 GLRNGMEVLKIMQQNNLKPQDSTIATL---------SVECSKALELDLAEALLDQISRCT 393
            ++      K M  + + P +     L         +VE     +  L + L+  I    
Sbjct: 571 EIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDI---- 626

Query: 394 NPKPFSAFLAACDTMDKPERAIKIFAK-MRQKLRPDIRTYELLFSLF---GNVNAP---Y 446
             + +SA + +     K + A+ +F K ++  + PD+  Y  L S F   G++      Y
Sbjct: 627 --RAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLY 684

Query: 447 EEG----------------NMFSQVDSAKRINAIEM--DMARNNIQHSHISMKNLLKALG 488
           +E                 N +    S     A ++  +M    I         L+   G
Sbjct: 685 DEMLHNGINPNIVVYNTLINDYGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCG 744

Query: 489 AEGMIRELIQYFCDS--KTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAAT 546
            EG + + +  F ++  K+      +N+++ S  +  +   A E+F  M    + PN  T
Sbjct: 745 KEGNLEKALSLFHEAQQKSVGSLSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVT 804

Query: 547 YNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI----------KILLDYGDFD 596
           Y I+ID        + A  L   M      P T+TYT+L+          K++  + D +
Sbjct: 805 YTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDME 864

Query: 597 -------------------------EALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
                                    EAL LL+   +EGI  +  +++ ++   C++ +I 
Sbjct: 865 ARGIACDAIAYGVMASAYCKEGKSLEALKLLNKSLVEGIKLEDDVFDALIFHLCKEKQIS 924

Query: 632 VIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
            +  ++ +M + ++     TC+ +  G+   G  + A + L V+
Sbjct: 925 TVLELLSEMGKEELSLSSKTCNTLLLGFYKSGNEDEASKVLGVM 968



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 107/517 (20%), Positives = 207/517 (40%), Gaps = 53/517 (10%)

Query: 156 PILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEI 215
           P L  YN+F+G   +  ++  A     LM  + +G +  TYT L+     QK       I
Sbjct: 274 PNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLI 333

Query: 216 WEDYIKH-YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAM-MGKLYINRTSEGRLR 273
           +E       + + F+    +  F +  +++ A      M+   + +  +  N    G  +
Sbjct: 334 FESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAK 393

Query: 274 SSRLDIPIPLNALPVMKVLR---WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHT 330
           +  +   + L    +M  +    W+++ +I    ++ +   A +L+ +M++  L PS  T
Sbjct: 394 AGEMAKAMSLFNEMLMAGIEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFT 453

Query: 331 YDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLD-QI 389
           Y   I  +     L+   EVL  M +N +KP      TL     +    ++A  LL   I
Sbjct: 454 YSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMI 513

Query: 390 SRCTNPKPF--SAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPY 446
           +    P  F  +  +       K E A  +   M +K ++P+  TY    +L+       
Sbjct: 514 ANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKS---- 569

Query: 447 EEGNMFSQVDSAKRI--NAIEMDMARNNIQHS-----HISMKNLLKALGA------EGMI 493
                  ++  A+R   + +   +  NN+ ++     H  + N ++AL        +G+I
Sbjct: 570 ------GEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLI 623

Query: 494 RELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC 553
            ++               Y+ ++HSL +  ++  AM +F +    G+ P+   YN +I  
Sbjct: 624 PDI-------------RAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISG 670

Query: 554 CSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDY-----GDFDEALNLLDLVSLE 608
                  + AS L   M+ +G  P  + Y  LI    DY     G+  EA  L D +  +
Sbjct: 671 FCKEGDIEKASQLYDEMLHNGINPNIVVYNTLIN---DYGYCKSGNLTEAFKLFDEMISK 727

Query: 609 GIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           GI  D  +Y  ++    ++G ++    +  +  Q  V
Sbjct: 728 GISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSV 764



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 70/372 (18%), Positives = 155/372 (41%), Gaps = 54/372 (14%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           +++++VI A  +  +    + ++ +M+    +P+  TY+ FI  +     +   +EV K+
Sbjct: 243 YTYTNVIKAHCKVGDVIKGKMVLSEMEK-ECKPNLFTYNAFIGGLCQTGAVDEALEVKKL 301

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPER 413
           M +  L P   T   L                +D   +                  + + 
Sbjct: 302 MMEKGLGPDGHTYTLL----------------VDGFCK----------------QKRSKE 329

Query: 414 AIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNN 472
           A  IF  M    L P+  TY  L   F       +EGN    ++ A RI     +M    
Sbjct: 330 AKLIFESMPSSGLNPNRFTYTALIDGF------IKEGN----IEEALRIKD---EMITRG 376

Query: 473 IQHSHISMKNLLKALGAEGMIRELIQYFCD---SKTPLGTPTYNTVLHSLVEAQESHRAM 529
           ++ + ++   ++  +   G + + +  F +   +     T TYN ++   +++ +  +A 
Sbjct: 377 LKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGIEPDTWTYNLLIDGYLKSHDMAKAC 436

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
           E+  +MK   + P+  TY+++I         + A+ ++  M+R+G  P    Y  LIK  
Sbjct: 437 ELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAY 496

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649
           +    ++ A+ LL ++   G+  D+  YN ++   C   +++  + ++  M +  ++P+ 
Sbjct: 497 VQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNA 556

Query: 650 STCHFVFSGYVN 661
            T    +  ++N
Sbjct: 557 HT----YGAFIN 564



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 76/170 (44%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TYN  +  L +      A+E+ K M   G+ P+  TY +++D     +  K A  +   M
Sbjct: 278 TYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESM 337

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
              G  P   TYTALI   +  G+ +EAL + D +   G+  +V+ YN ++    + G +
Sbjct: 338 PSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEM 397

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRML 680
                +  +M    ++PD  T + +  GY+       A E L  +  R L
Sbjct: 398 AKAMSLFNEMLMAGIEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKL 447



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 61/285 (21%), Positives = 110/285 (38%), Gaps = 25/285 (8%)

Query: 416 KIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKR-----INAIEMDMA 469
           K++  M + K+ PD+ TY  +      V    +   + S+++   +      NA    + 
Sbjct: 228 KVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEMEKECKPNLFTYNAFIGGLC 287

Query: 470 RNNIQHSHISMKNLL--KALGAEGMIREL-IQYFCDSKTPLGTP---------------- 510
           +       + +K L+  K LG +G    L +  FC  K                      
Sbjct: 288 QTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRF 347

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TY  ++   ++      A+ I  +M T G+  N  TYN MI   +       A +L + M
Sbjct: 348 TYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEM 407

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           +  G  P T TY  LI   L   D  +A  LL  +    +      Y+ ++   C    +
Sbjct: 408 LMAGIEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDL 467

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
                +++QM +N V+P+      +   YV    +  A+E L+++
Sbjct: 468 QKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIM 512



 Score = 46.6 bits (109), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 71/177 (40%), Gaps = 6/177 (3%)

Query: 491 GMIRELIQYFCDSKTPLGTPTY---NTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATY 547
           G + E    F  S +    PT    N ++  L++A       +++  M    I P+  TY
Sbjct: 186 GFLNEASSVFIASISEGFFPTLICCNNLMRDLLKANMMGLFWKVYGSMVEAKIVPDVYTY 245

Query: 548 -NIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVS 606
            N++   C +    K    L  M       P   TY A I  L   G  DEAL +  L+ 
Sbjct: 246 TNVIKAHCKVGDVIKGKMVLSEM--EKECKPNLFTYNAFIGGLCQTGAVDEALEVKKLMM 303

Query: 607 LEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
            +G+  D   Y  ++   C++ R    + I E M  + + P+  T   +  G++  G
Sbjct: 304 EKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKEG 360


>gi|218191848|gb|EEC74275.1| hypothetical protein OsI_09511 [Oryza sativa Indica Group]
          Length = 933

 Score = 86.3 bits (212), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 115/546 (21%), Positives = 209/546 (38%), Gaps = 60/546 (10%)

Query: 161 YNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI 220
           YN+ +    +   +  A   LD+M    V  N  TYT  +      K +    +++E  +
Sbjct: 207 YNTLVAGFCRAGQVDAARGVLDMMKEAGVDPNVATYTPFIVYYCRTKGVEEAFDLYEGMV 266

Query: 221 KH-YSLSIFSLRKFVWSFTRLRDLKSAYETLQHM------------------VALAMMGK 261
           ++   L + +L   V    R      AY   + M                  +A A  GK
Sbjct: 267 RNGVLLDVVTLSALVAGLCRDGRFSEAYALFREMDKVGAVPNHVTYCTLIDSLAKAGRGK 326

Query: 262 LYINRTSEGRLRSSRLDIPIPLNAL-----------PVMKVLRWSFSD-----------V 299
             ++   E   R   +D+ +   AL            V   LR++ SD           +
Sbjct: 327 ELLSLLGEMVSRGVVMDL-VTYTALMDWLGKQGKTDEVKDTLRFALSDNLSLNGVTYTVL 385

Query: 300 IHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNL 359
           I A  +  N   AEQ++L+M+   + P+  T+   I   V    L    E  ++M++  +
Sbjct: 386 IDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKATEYKRMMKERGI 445

Query: 360 KPQDSTIATLSVECSKALELDLA-EALLDQISRCTNPKPF--SAFLAACDTMDKPERAIK 416
            P   T  TL     K    D A E   D +        F   + +       K E A+ 
Sbjct: 446 NPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCEGVEVNKFIVDSLVNGLRQNGKIEEAMA 505

Query: 417 IFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQH 475
           +F       L  D   Y  L      ++  ++ G+M +     + +      M RN +  
Sbjct: 506 LFKDASGSGLSLDHVNYTTL------IDGLFKAGDMPTAFKFGQEL------MDRNMLPD 553

Query: 476 SHI--SMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFK 533
           + +     N L  LG     + ++    +        TYNT++ S     E+ +A+++  
Sbjct: 554 AVVYNVFINCLCILGKFKEAKSILTEMRNMGLKPDQSTYNTMIVSHCRKGETAKALKLLH 613

Query: 534 QMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYG 593
           +MK   I PN  TYN ++         + A  L++ MV  GF P ++T+  +++      
Sbjct: 614 EMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSSLTHRRVLQACSQSR 673

Query: 594 DFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCH 653
             D  L++ + +   G+  D+ +YNT+L+  C  G       ++E+M  + + PD  T +
Sbjct: 674 RLDVILDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRKATVVLEEMLGSGIAPDTITFN 733

Query: 654 FVFSGY 659
            +  G+
Sbjct: 734 ALILGH 739



 Score = 69.3 bits (168), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 117/590 (19%), Positives = 226/590 (38%), Gaps = 42/590 (7%)

Query: 106 VMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFL 165
           V +T R      + LN   Y +++ ALCK   ++EA  ++  + E+  I P +  ++S +
Sbjct: 363 VKDTLRFALSDNLSLNGVTYTVLIDALCKAHNVDEAEQVLLEMEEK-SISPNVVTFSSVI 421

Query: 166 GACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYS 224
               K   +  A     +M  R +  N VTY  L+      +   A  E++ D + +   
Sbjct: 422 NGFVKRGLLDKATEYKRMMKERGINPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCEGVE 481

Query: 225 LSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTS--EGRLRSSRLDIPIP 282
           ++ F +   V    +   ++ A    +     + +   ++N T+  +G  ++   D+P  
Sbjct: 482 VNKFIVDSLVNGLRQNGKIEEAMALFKDASG-SGLSLDHVNYTTLIDGLFKAG--DMPTA 538

Query: 283 L---------NALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDG 333
                     N LP   V+   F + +   G+ +    A+ ++ +M+++GL+P   TY+ 
Sbjct: 539 FKFGQELMDRNMLPD-AVVYNVFINCLCILGKFKE---AKSILTEMRNMGLKPDQSTYNT 594

Query: 334 FIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRC 392
            I +          +++L  M+ +++KP   T  TL         ++ A+ LL++ +S  
Sbjct: 595 MIVSHCRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAG 654

Query: 393 TNPKPFS--AFLAACDTMDKPERAIKIFA-KMRQKLRPDIRTYELLFSLFGNVNAPYEEG 449
            +P   +    L AC    + +  + I    M   L  DI  Y  L              
Sbjct: 655 FSPSSLTHRRVLQACSQSRRLDVILDIHEWMMNAGLHADITVYNTLL------------- 701

Query: 450 NMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLL----KALGAEGMIRELIQYFCDSKT 505
            +       ++   +  +M  + I    I+   L+    K+   +       Q    + +
Sbjct: 702 QVLCYHGMTRKATVVLEEMLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQNIS 761

Query: 506 PLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASA 565
           P    T+NT+L  L        A  +  +M+  G+ PN  TY+I++           A  
Sbjct: 762 P-NIATFNTLLGGLESVGRIGEAGTVLIEMEKSGLEPNNLTYDILVTGHGKQSNKVEAMR 820

Query: 566 LVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKAC 625
           L   MV  GF P+  TY ALI      G   +A  L   +   G+      Y+ ++    
Sbjct: 821 LYCEMVGKGFVPKVSTYNALISDFTKAGMMTQAKELFKDMQKRGVHPTSCTYDILVSGWS 880

Query: 626 EKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
                  ++  ++ M +    P   T  F+   +   G    A   L+ L
Sbjct: 881 RIRNGTEVKKCLKDMKEKGFSPSKGTLSFICRAFSKPGMTWQAQRLLKNL 930



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 84/378 (22%), Positives = 153/378 (40%), Gaps = 42/378 (11%)

Query: 325 QPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEA 384
           +P++  Y+  + A +SD    +   VL  M +  +     T+ TL     +  ++D A A
Sbjct: 100 RPTTVAYN-ILLAALSDHA--HAPAVLAEMCKRGVPFDGVTVNTLLAGLCRNGQVDAAAA 156

Query: 385 LLDQIS--RCTNPKPFSAFLAA-CDTMDKPERAIKIFAKMR-QKLRPDIRTYELLFSLFG 440
           L D+       +   ++  +A  C   D P  A+ +  +M  Q L  D+  Y  L + F 
Sbjct: 157 LADRGGGIHALDVIGWNTLIAGYCRVGDTPA-ALSVADRMTAQGLPMDVVGYNTLVAGFC 215

Query: 441 NVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISM-----------KNLLKALGA 489
                        QVD+A+ +    +DM +      +++            K + +A   
Sbjct: 216 RAG----------QVDAARGV----LDMMKEAGVDPNVATYTPFIVYYCRTKGVEEAFDL 261

Query: 490 -EGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYN 548
            EGM+R  +         L   T + ++  L        A  +F++M   G  PN  TY 
Sbjct: 262 YEGMVRNGVL--------LDVVTLSALVAGLCRDGRFSEAYALFREMDKVGAVPNHVTYC 313

Query: 549 IMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLE 608
            +ID  +     K   +L+  MV  G     +TYTAL+  L   G  DE  + L     +
Sbjct: 314 TLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDEVKDTLRFALSD 373

Query: 609 GIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSA 668
            +  + + Y  ++   C+   +D  E ++ +M +  + P+  T   V +G+V  G  + A
Sbjct: 374 NLSLNGVTYTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKA 433

Query: 669 MEALQVLSMRMLCEEVST 686
            E  +++  R +   V T
Sbjct: 434 TEYKRMMKERGINPNVVT 451



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 107/562 (19%), Positives = 201/562 (35%), Gaps = 85/562 (15%)

Query: 156 PILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEI 215
           P    YN  L A   L    HA   L  M  R V  + VT   LL        + A   +
Sbjct: 101 PTTVAYNILLAA---LSDHAHAPAVLAEMCKRGVPFDGVTVNTLLAGLCRNGQVDAAAAL 157

Query: 216 WEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAM-MGKLYINRTSEGRLRS 274
            +     ++L +      +  + R+ D  +A      M A  + M  +  N    G  R+
Sbjct: 158 ADRGGGIHALDVIGWNTLIAGYCRVGDTPAALSVADRMTAQGLPMDVVGYNTLVAGFCRA 217

Query: 275 SRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGF 334
            ++D                                 A  ++  M+  G+ P+  TY  F
Sbjct: 218 GQVDA--------------------------------ARGVLDMMKEAGVDPNVATYTPF 245

Query: 335 IRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTN 394
           I      +G+    ++ + M +N +     T++ L     +      A AL  ++ +   
Sbjct: 246 IVYYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAYALFREMDKVGA 305

Query: 395 PKPFSAFLAACDTMDKPERAIKIFAKMRQKLRP----DIRTYELLFSLFGNVNAPYEEGN 450
                 +    D++ K  R  ++ + + + +      D+ TY  L    G      ++G 
Sbjct: 306 VPNHVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDWLG------KQGK 359

Query: 451 MFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP 510
              +V    R  A+  +++ N + ++ + +  L KA   +   + L++    S +P    
Sbjct: 360 T-DEVKDTLRF-ALSDNLSLNGVTYT-VLIDALCKAHNVDEAEQVLLEMEEKSISP-NVV 415

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID------------------ 552
           T+++V++  V+     +A E  + MK  GI PN  TY  +ID                  
Sbjct: 416 TFSSVINGFVKRGLLDKATEYKRMMKERGINPNVVTYGTLIDGFFKFQGQDAALEVYHDM 475

Query: 553 CCSIIRCFK-SASALVSMMVRDGFYPQTMT----------------YTALIKILLDYGDF 595
            C  +   K    +LV+ + ++G   + M                 YT LI  L   GD 
Sbjct: 476 LCEGVEVNKFIVDSLVNGLRQNGKIEEAMALFKDASGSGLSLDHVNYTTLIDGLFKAGDM 535

Query: 596 DEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFV 655
             A      +    +  D ++YN  +   C  G+    + I+ +M    ++PD ST + +
Sbjct: 536 PTAFKFGQELMDRNMLPDAVVYNVFINCLCILGKFKEAKSILTEMRNMGLKPDQSTYNTM 595

Query: 656 FSGYVNCGFHNSAMEALQVLSM 677
              +   G    A++ L  + M
Sbjct: 596 IVSHCRKGETAKALKLLHEMKM 617


>gi|297830278|ref|XP_002883021.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328861|gb|EFH59280.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 504

 Score = 86.3 bits (212), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 81/364 (22%), Positives = 155/364 (42%), Gaps = 20/364 (5%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +F+ ++H          A  L  Q+  +G +P+  TY   I  +  +R L + +E+   M
Sbjct: 154 TFTSLLHGFCHWNRIEDALALFDQIVGMGFRPNVVTYTTLIHCLCKNRHLNHAVEIFNQM 213

Query: 355 QQNNLKPQDSTIATL-SVECSKALELDLAEALLDQISRCTNPK--PFSAFLAACDTMDKP 411
             N ++P   T  +L S  C      D A  L D + R   P    F+A + A   + K 
Sbjct: 214 GDNGIRPNVVTYNSLVSGLCEIGRWSDAAWLLRDMMKRGIQPNVITFTALIDAFVKVGKI 273

Query: 412 ERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
             A +++  M Q  + PD+ TY  L      +N     G    ++D A+++  +   M  
Sbjct: 274 MEAKELYKVMIQMSVYPDVFTYTAL------INGLCTYG----RLDEARQMFYL---MES 320

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCD-SKTPL--GTPTYNTVLHSLVEAQESHR 527
           N    + ++   L+        + +  + F + S+  L   T TY  ++           
Sbjct: 321 NGYYPNEVTYTTLIHGFCKSKRVEDGTKIFYEMSQKGLVANTITYTVLIQGYCLVGRPDV 380

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A E+F QM +   PP+  TYN+++D        + A  +   M +       +TYT +I+
Sbjct: 381 AQEVFNQMGSRRAPPDIRTYNVLLDGLCYNGYVEKALMIFKYMRKREMDINIVTYTIIIQ 440

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
            +   G  ++A +L   +  +G+  +V+ Y T++   C +G I   + + ++M ++   P
Sbjct: 441 GMCKVGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGFIHEADALFKKMKEDGFLP 500

Query: 648 DPST 651
           + S 
Sbjct: 501 NESV 504



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 97/393 (24%), Positives = 157/393 (39%), Gaps = 40/393 (10%)

Query: 317 LQMQSLGLQPSSHTYDGF---IRAIVSDRG-LRNGMEVLKIMQQNNL-------KPQDST 365
           LQ+ + G  P+  +  GF   IRA  + R  LRNG+  L+  +  +L       +P  S 
Sbjct: 24  LQISNHGASPTL-SLCGFCFWIRAFSNYRKILRNGLHNLQFNEALDLFTRMVHSRPLPSI 82

Query: 366 I---ATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTM-------DKPERAI 415
           +     LSV  +K    D+  +L +Q+         S  L  C+ +        +P RA 
Sbjct: 83  VDFTRLLSV-IAKMKRFDVVISLFEQMQILG----ISPVLYTCNIVMNCVCRSSQPCRAS 137

Query: 416 KIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQ-VDSAKRINAIEMDMARNNI 473
               KM +    PD+ T+  L   F + N   +   +F Q V    R N +        +
Sbjct: 138 CFLGKMMKLGFEPDLVTFTSLLHGFCHWNRIEDALALFDQIVGMGFRPNVV----TYTTL 193

Query: 474 QHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFK 533
            H     ++L  A+       E+     D+       TYN+++  L E      A  + +
Sbjct: 194 IHCLCKNRHLNHAV-------EIFNQMGDNGIRPNVVTYNSLVSGLCEIGRWSDAAWLLR 246

Query: 534 QMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYG 593
            M   GI PN  T+  +ID    +     A  L  +M++   YP   TYTALI  L  YG
Sbjct: 247 DMMKRGIQPNVITFTALIDAFVKVGKIMEAKELYKVMIQMSVYPDVFTYTALINGLCTYG 306

Query: 594 DFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCH 653
             DEA  +  L+   G   + + Y T++   C+  R++    I  +M Q  +  +  T  
Sbjct: 307 RLDEARQMFYLMESNGYYPNEVTYTTLIHGFCKSKRVEDGTKIFYEMSQKGLVANTITYT 366

Query: 654 FVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
            +  GY   G  + A E    +  R    ++ T
Sbjct: 367 VLIQGYCLVGRPDVAQEVFNQMGSRRAPPDIRT 399



 Score = 66.6 bits (161), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 78/387 (20%), Positives = 141/387 (36%), Gaps = 49/387 (12%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           F+ ++    + +   +   L  QMQ LG+ P  +T +  +  +            L  M 
Sbjct: 85  FTRLLSVIAKMKRFDVVISLFEQMQILGISPVLYTCNIVMNCVCRSSQPCRASCFLGKMM 144

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQISRC---TNPKPFSAFLAACDTMDKPE 412
           +   +P   T  +L         ++ A AL DQI       N   ++  +          
Sbjct: 145 KLGFEPDLVTFTSLLHGFCHWNRIEDALALFDQIVGMGFRPNVVTYTTLIHCLCKNRHLN 204

Query: 413 RAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471
            A++IF +M    +RP++ TY  L S    +             D+A  +     DM + 
Sbjct: 205 HAVEIFNQMGDNGIRPNVVTYNSLVSGLCEIG---------RWSDAAWLLR----DMMKR 251

Query: 472 NIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEI 531
            IQ + I+   L+ A    G I E                                A E+
Sbjct: 252 GIQPNVITFTALIDAFVKVGKIME--------------------------------AKEL 279

Query: 532 FKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLD 591
           +K M    + P+  TY  +I+          A  +  +M  +G+YP  +TYT LI     
Sbjct: 280 YKVMIQMSVYPDVFTYTALINGLCTYGRLDEARQMFYLMESNGYYPNEVTYTTLIHGFCK 339

Query: 592 YGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
               ++   +   +S +G+  + + Y  +++  C  GR DV + +  QM   +  PD  T
Sbjct: 340 SKRVEDGTKIFYEMSQKGLVANTITYTVLIQGYCLVGRPDVAQEVFNQMGSRRAPPDIRT 399

Query: 652 CHFVFSGYVNCGFHNSAMEALQVLSMR 678
            + +  G    G+   A+   + +  R
Sbjct: 400 YNVLLDGLCYNGYVEKALMIFKYMRKR 426


>gi|115458970|ref|NP_001053085.1| Os04g0477200 [Oryza sativa Japonica Group]
 gi|113564656|dbj|BAF14999.1| Os04g0477200, partial [Oryza sativa Japonica Group]
          Length = 528

 Score = 86.3 bits (212), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 112/232 (48%), Gaps = 16/232 (6%)

Query: 423 QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKN 482
           + L PD+ TY +L      +N   +EGN+       K+   I  +M+R  ++ + ++   
Sbjct: 281 KGLAPDVFTYNIL------INGHCKEGNV-------KKALEIFENMSRRGVRATVVTYTA 327

Query: 483 LLKALGAEGMIRELIQYFCDSKTPLGTPT---YNTVLHSLVEAQESHRAMEIFKQMKTCG 539
           L+ AL  +G ++E  + F ++      P    YN +++S   +    RA EI  +M+   
Sbjct: 328 LIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKR 387

Query: 540 IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEAL 599
           I P+  TYN ++    ++     A  L+  M   G  P  +TY  LI      GD  +AL
Sbjct: 388 IAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDAL 447

Query: 600 NLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
            + + +  +G    +L YN +++  C+ G+ D  E ++++M +N + PD ST
Sbjct: 448 RIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDST 499



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 77/362 (21%), Positives = 152/362 (41%), Gaps = 30/362 (8%)

Query: 309 SGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIAT 368
           S  A  L   M  L L   + T++  +R + S       +E+L+ M + N    ++ IA 
Sbjct: 95  SAPAFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALELLRQMPRPNAVTYNTVIAG 154

Query: 369 LSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKM--RQKLR 426
                     LD+   + ++     N   +   ++    + + + A+K+F +M  + +++
Sbjct: 155 FCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVK 214

Query: 427 PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI--NAIEMDMARNNIQHSHISMKN-- 482
           P+   Y  L   +       ++G + + +    R+    + M +A  N+    + M    
Sbjct: 215 PEAVMYNALIGGY------CDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRG 268

Query: 483 -----LLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKT 537
                L++ +G +G+  ++              TYN +++   +     +A+EIF+ M  
Sbjct: 269 TEAYELVEEMGGKGLAPDVF-------------TYNILINGHCKEGNVKKALEIFENMSR 315

Query: 538 CGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDE 597
            G+     TY  +I   S     +    L    VR G  P  + Y ALI      G+ D 
Sbjct: 316 RGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDR 375

Query: 598 ALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFS 657
           A  ++  +  + I  D + YNT+++  C  GR+D    +I++M +  +QPD  T + + S
Sbjct: 376 AFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLIS 435

Query: 658 GY 659
           GY
Sbjct: 436 GY 437



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 95/213 (44%), Gaps = 13/213 (6%)

Query: 412 ERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA- 469
           ++A++IF  M R+ +R  + TY  L           E   +F   D A R   I  D+  
Sbjct: 304 KKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLF---DEAVR-RGIRPDLVL 359

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAM 529
            N + +SH +  N+ +A        E++      +      TYNT++  L        A 
Sbjct: 360 YNALINSHSTSGNIDRAF-------EIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEAR 412

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
           ++  +M   GI P+  TYN +I   S+    K A  + + M+  GF P  +TY ALI+ L
Sbjct: 413 KLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGL 472

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILK 622
              G  D+A N++  +   GI  D   Y ++++
Sbjct: 473 CKNGQGDDAENMVKEMVENGITPDDSTYISLIE 505



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 78/366 (21%), Positives = 151/366 (41%), Gaps = 26/366 (7%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQ-NNLKPQDSTIATLS 370
           A +L+ QM     +P++ TY+  I    S   ++  +++++ M++   + P   T  T+ 
Sbjct: 133 ALELLRQMP----RPNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVI 188

Query: 371 VECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDKPERAIKIFAKMRQK-L 425
               K   +D A  + D++      KP    ++A +       K + A+    +M ++ +
Sbjct: 189 SGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGV 248

Query: 426 RPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINA--IEMDMARNNIQ-HSHISMKN 482
              + TY LL      V+A + +G      +  + +    +  D+   NI  + H    N
Sbjct: 249 AMTVATYNLL------VHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGN 302

Query: 483 LLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPP 542
           + KAL       E+ +            TY  ++++L +  +     ++F +    GI P
Sbjct: 303 VKKAL-------EIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRP 355

Query: 543 NAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL 602
           +   YN +I+  S       A  ++  M +    P  +TY  L++ L   G  DEA  L+
Sbjct: 356 DLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLI 415

Query: 603 DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNC 662
           D ++  GI  D++ YNT++     KG +     I  +M      P   T + +  G    
Sbjct: 416 DEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKN 475

Query: 663 GFHNSA 668
           G  + A
Sbjct: 476 GQGDDA 481



 Score = 56.2 bits (134), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 56/265 (21%), Positives = 115/265 (43%), Gaps = 20/265 (7%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ ++HA         A +L+ +M   GL P   TY+  I     +  ++  +E+ + M
Sbjct: 254 TYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENM 313

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPK--PFSAFLAACDTMDKP 411
            +  ++    T   L    SK  ++   + L D+ + R   P    ++A + +  T    
Sbjct: 314 SRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNI 373

Query: 412 ERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           +RA +I  +M +K + PD  TY  L               +  +VD A+++  I+ +M  
Sbjct: 374 DRAFEIMGEMEKKRIAPDDVTYNTLMRGL----------CLLGRVDEARKL--ID-EMTE 420

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHR 527
             IQ   ++   L+     +G +++ ++   +       P   TYN ++  L +  +   
Sbjct: 421 RGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDD 480

Query: 528 AMEIFKQMKTCGIPPNAATYNIMID 552
           A  + K+M   GI P+ +TY  +I+
Sbjct: 481 AENMVKEMVENGITPDDSTYISLIE 505



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 76/166 (45%), Gaps = 8/166 (4%)

Query: 507 LGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI-DCCSIIRCFKSASA 565
           L  P     LH L+ A  S  A  +F  M    +P    T+NIM+   CS     K A A
Sbjct: 77  LSLPISTASLHPLLSALPSAPAFALFADMFRLRLPLCTTTFNIMLRHLCS---AGKPARA 133

Query: 566 LVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL-DLVSLEGIPHDVLLYNTILKKA 624
           L   ++R    P  +TY  +I      G    AL+++ ++    GI  +   Y T++   
Sbjct: 134 L--ELLRQMPRPNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGW 191

Query: 625 CEKGRID-VIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAM 669
           C+ GR+D  ++   E + + +V+P+    + +  GY + G  ++A+
Sbjct: 192 CKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTAL 237


>gi|38605763|emb|CAE05864.3| OSJNBa0044K18.6 [Oryza sativa Japonica Group]
          Length = 902

 Score = 86.3 bits (212), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 88/384 (22%), Positives = 166/384 (43%), Gaps = 61/384 (15%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQ-NNLKPQDSTIATLS 370
           A +L+ QM     +P++ TY+  I    S   ++  +++++ M++   + P   T  T+ 
Sbjct: 507 ALELLRQMP----RPNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVI 562

Query: 371 VECSKALELDLAEALLDQISRCTNPKP----FSAFLAA-CDT------------------ 407
               K   +D A  + D++      KP    ++A +   CD                   
Sbjct: 563 SGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGV 622

Query: 408 ---------------MD-KPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGN 450
                          MD +   A ++  +M  K L PD+ TY +L      +N   +EGN
Sbjct: 623 AMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNIL------INGHCKEGN 676

Query: 451 MFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP 510
           +       K+   I  +M+R  ++ + ++   L+ AL  +G ++E  + F ++      P
Sbjct: 677 V-------KKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRP 729

Query: 511 T---YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALV 567
               YN +++S   +    RA EI  +M+   I P+  TYN ++    ++     A  L+
Sbjct: 730 DLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLI 789

Query: 568 SMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEK 627
             M   G  P  +TY  LI      GD  +AL + + +  +G    +L YN +++  C+ 
Sbjct: 790 DEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKN 849

Query: 628 GRIDVIEFIIEQMHQNKVQPDPST 651
           G+ D  E ++++M +N + PD ST
Sbjct: 850 GQGDDAENMVKEMVENGITPDDST 873



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 77/362 (21%), Positives = 152/362 (41%), Gaps = 30/362 (8%)

Query: 309 SGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIAT 368
           S  A  L   M  L L   + T++  +R + S       +E+L+ M + N    ++ IA 
Sbjct: 469 SAPAFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALELLRQMPRPNAVTYNTVIAG 528

Query: 369 LSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKM--RQKLR 426
                     LD+   + ++     N   +   ++    + + + A+K+F +M  + +++
Sbjct: 529 FCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVK 588

Query: 427 PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI--NAIEMDMARNNIQHSHISMKN-- 482
           P+   Y  L   +       ++G + + +    R+    + M +A  N+    + M    
Sbjct: 589 PEAVMYNALIGGY------CDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRG 642

Query: 483 -----LLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKT 537
                L++ +G +G+  ++              TYN +++   +     +A+EIF+ M  
Sbjct: 643 TEAYELVEEMGGKGLAPDVF-------------TYNILINGHCKEGNVKKALEIFENMSR 689

Query: 538 CGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDE 597
            G+     TY  +I   S     +    L    VR G  P  + Y ALI      G+ D 
Sbjct: 690 RGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDR 749

Query: 598 ALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFS 657
           A  ++  +  + I  D + YNT+++  C  GR+D    +I++M +  +QPD  T + + S
Sbjct: 750 AFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLIS 809

Query: 658 GY 659
           GY
Sbjct: 810 GY 811



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 95/213 (44%), Gaps = 13/213 (6%)

Query: 412 ERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA- 469
           ++A++IF  M R+ +R  + TY  L           E   +F   D A R   I  D+  
Sbjct: 678 KKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLF---DEAVR-RGIRPDLVL 733

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAM 529
            N + +SH +  N+ +A        E++      +      TYNT++  L        A 
Sbjct: 734 YNALINSHSTSGNIDRAF-------EIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEAR 786

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
           ++  +M   GI P+  TYN +I   S+    K A  + + M+  GF P  +TY ALI+ L
Sbjct: 787 KLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGL 846

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILK 622
              G  D+A N++  +   GI  D   Y ++++
Sbjct: 847 CKNGQGDDAENMVKEMVENGITPDDSTYISLIE 879



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 56/265 (21%), Positives = 115/265 (43%), Gaps = 20/265 (7%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ ++HA         A +L+ +M   GL P   TY+  I     +  ++  +E+ + M
Sbjct: 628 TYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENM 687

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPK--PFSAFLAACDTMDKP 411
            +  ++    T   L    SK  ++   + L D+ + R   P    ++A + +  T    
Sbjct: 688 SRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNI 747

Query: 412 ERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           +RA +I  +M +K + PD  TY  L               +  +VD A+++  I+ +M  
Sbjct: 748 DRAFEIMGEMEKKRIAPDDVTYNTLMRGL----------CLLGRVDEARKL--ID-EMTE 794

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHR 527
             IQ   ++   L+     +G +++ ++   +       P   TYN ++  L +  +   
Sbjct: 795 RGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDD 854

Query: 528 AMEIFKQMKTCGIPPNAATYNIMID 552
           A  + K+M   GI P+ +TY  +I+
Sbjct: 855 AENMVKEMVENGITPDDSTYISLIE 879



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 76/166 (45%), Gaps = 8/166 (4%)

Query: 507 LGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI-DCCSIIRCFKSASA 565
           L  P     LH L+ A  S  A  +F  M    +P    T+NIM+   CS     K A A
Sbjct: 451 LSLPISTASLHPLLSALPSAPAFALFADMFRLRLPLCTTTFNIMLRHLCS---AGKPARA 507

Query: 566 LVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL-DLVSLEGIPHDVLLYNTILKKA 624
           L   ++R    P  +TY  +I      G    AL+++ ++    GI  +   Y T++   
Sbjct: 508 L--ELLRQMPRPNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGW 565

Query: 625 CEKGRID-VIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAM 669
           C+ GR+D  ++   E + + +V+P+    + +  GY + G  ++A+
Sbjct: 566 CKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTAL 611


>gi|147780655|emb|CAN66818.1| hypothetical protein VITISV_004776 [Vitis vinifera]
          Length = 1037

 Score = 86.3 bits (212), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 104/512 (20%), Positives = 206/512 (40%), Gaps = 29/512 (5%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y  ++   C+ G+  EA NL   + +  GI P +  YN+ L    ++ +   A     LM
Sbjct: 405 YNTLLDGYCREGHTSEAFNLCDKMLQE-GIEPTVLTYNTLLKGLCRVGAFDDALQIWHLM 463

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYSLSIFSLRKFVWSFTRLRDL 243
               V  +EV Y+ LL      +N      +W+D + + ++ S  +    +    ++  +
Sbjct: 464 MKXGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKM 523

Query: 244 KSAYETLQHMVALAMMGKLYINRT-SEGRLRSSRLDIPIPLNALPVMKVLRWS---FSDV 299
             A E    M  L         RT  +G  ++S +     +      + +  S   ++ +
Sbjct: 524 VEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREXISPSIEMYNSL 583

Query: 300 IHACGRTQNSGLAEQLMLQMQSLGLQPSSHTY----DGFIRAIVSDRGLRNGMEVLKIMQ 355
           I    +++       L+ +M   GL P+  TY    DG+ +  + D+   +  E    M 
Sbjct: 584 ISGLFKSRRLVEXTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFE----MT 639

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAI 415
           +N L       +T+     +   +D A  L+ ++           F    +   K +   
Sbjct: 640 ENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVD-------HGFFPDHECFLKSDIRY 692

Query: 416 KIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQH 475
               K+   L    +T+ L  ++  N+           +VD A+R  ++   ++      
Sbjct: 693 AAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKT--GKVDDARRFFSM---LSLKGFVP 747

Query: 476 SHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIF 532
            + +   L+    A G + E  +   +       P   TYN +++ L +++   RA  +F
Sbjct: 748 DNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLF 807

Query: 533 KQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDY 592
            ++   G+ PN  TYN +ID    I    +A  L   M+ +G  P  +TY+ALI  L  +
Sbjct: 808 HKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEEGISPSVVTYSALINGLCKH 867

Query: 593 GDFDEALNLLDLVSLEGIPHDVLLYNTILKKA 624
           GD + ++ LL+ +   G+   ++ Y T+++  
Sbjct: 868 GDIERSMKLLNQMIKAGVDSKLIEYCTLVQGG 899



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 119/583 (20%), Positives = 225/583 (38%), Gaps = 50/583 (8%)

Query: 127 LMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDS 186
           +M+ A CK G ++EA+  +  + E  G+ P +  Y+S +     L  +  A   L  M  
Sbjct: 231 IMVNAFCKDGKVDEAAGFVKKM-ENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSE 289

Query: 187 RMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKF---VWSFTRLRDL 243
           + V +N VTYT L+K    Q  +    ++     +  +L +   R +   +  + R   +
Sbjct: 290 KGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAAL-VPDERAYGVLIDGYCRTGKI 348

Query: 244 KSAYETLQHMVALAMMGKLYI-NRTSEGRLRSSRLDIPIPLNALPV---MKVLRWSFSDV 299
             A   L  M+ L +   L+I N    G  +   +     +    V   +K   +S++ +
Sbjct: 349 DDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTL 408

Query: 300 IHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNL 359
           +    R  ++  A  L  +M   G++P+  TY+  ++ +       + +++  +M +  +
Sbjct: 409 LDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKXGV 468

Query: 360 KPQDSTIATLSVECSKALELDLAEALLDQI-------SRCTNPKPFSAFLAACDTMDKPE 412
            P +   +TL     K    + A  L   I       SR T    F+  ++    M K  
Sbjct: 469 APDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRIT----FNTMISGLCKMGKMV 524

Query: 413 RAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI-NAIEMDMAR 470
            A +IF KM+     PD  TY  L   +             S V  A ++  A+E +   
Sbjct: 525 EAEEIFDKMKDLGCSPDGITYRTLIDGYCKA----------SNVGQAFKVKGAMEREXIS 574

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLG----TP---TYNTVLHSLVEAQ 523
            +I+  +  +  L K+       R L++   D  T +G    TP   TY  ++    +  
Sbjct: 575 PSIEMYNSLISGLFKS-------RRLVEX-TDLLTEMGIRGLTPNIVTYGALIDGWCKEG 626

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
              +A   + +M   G+  N    + M+     +     A+ L+  MV  GF+P    + 
Sbjct: 627 MLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPD---HE 683

Query: 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
             +K  + Y    +  + LD      +  + ++YN  +   C+ G++D        +   
Sbjct: 684 CFLKSDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLK 743

Query: 644 KVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
              PD  T   +  GY   G  + A      +  R L   + T
Sbjct: 744 GFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVT 786



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 119/582 (20%), Positives = 210/582 (36%), Gaps = 75/582 (12%)

Query: 111 RMMEEK-EIGLNNKCYLL--MMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFL-G 166
           R+++E   +GL    ++   ++   CK G + EA  +I  + + + + P    YN+ L G
Sbjct: 353 RLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVD-WNLKPDSYSYNTLLDG 411

Query: 167 ACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWE--------- 217
            C + H+    NLC D M    +    +TY  LLK            +IW          
Sbjct: 412 YCREGHTSEAFNLC-DKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKXGVAP 470

Query: 218 DYIKHYSL--SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSS 275
           D + + +L   +F +  F  + T  +D+                        + G  +S 
Sbjct: 471 DEVGYSTLLDGLFKMENFEGASTLWKDI-----------------------LARGFTKS- 506

Query: 276 RLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFI 335
                            R +F+ +I    +      AE++  +M+ LG  P   TY   I
Sbjct: 507 -----------------RITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLI 549

Query: 336 RAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQIS-RCTN 394
                   +    +V   M++  + P      +L     K+  L     LL ++  R   
Sbjct: 550 DGYCKASNVGQAFKVKGAMEREXISPSIEMYNSLISGLFKSRRLVEXTDLLTEMGIRGLT 609

Query: 395 PKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQ 454
           P     + A  D   K     K F+   +     +    ++ S    V+  Y  G    +
Sbjct: 610 PN-IVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTM--VSGLYRLG----R 662

Query: 455 VDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---T 511
           +D A   N +   M  +     H   +  LK+      I+++     +S      P    
Sbjct: 663 IDEA---NLLMQKMVDHGFFPDH---ECFLKSDIRYAAIQKIADSLDESCKTFLLPNNIV 716

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           YN  +  L +  +   A   F  +   G  P+  TY  +I   S       A  L   M+
Sbjct: 717 YNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEML 776

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
           R G  P  +TY ALI  L    + D A  L   +  +G+  +V+ YNT++   C+ G +D
Sbjct: 777 RRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMD 836

Query: 632 VIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
               + ++M +  + P   T   + +G    G    +M+ L 
Sbjct: 837 AAFKLKDKMIEEGISPSVVTYSALINGLCKHGDIERSMKLLN 878



 Score = 48.1 bits (113), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 38/180 (21%), Positives = 78/180 (43%), Gaps = 38/180 (21%)

Query: 509 TPT-YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALV 567
           +PT ++ +L   VE   +  A+ +F  M  CG  P+                 +S ++L+
Sbjct: 155 SPTVFDMILKVYVEKGLTKNALYVFDNMGKCGRIPS----------------LRSCNSLL 198

Query: 568 SMMVRDG-FYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE 626
           + +V++G  +     Y  +I++                    GI  DV + + ++   C+
Sbjct: 199 NNLVKNGETHTAHYVYQQMIRV--------------------GIVPDVFMVSIMVNAFCK 238

Query: 627 KGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
            G++D     +++M    V+P+  T H + +GYV+ G   +A   L+ +S + +   V T
Sbjct: 239 DGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVT 298


>gi|356560325|ref|XP_003548443.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Glycine max]
          Length = 746

 Score = 86.3 bits (212), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 71/346 (20%), Positives = 144/346 (41%), Gaps = 22/346 (6%)

Query: 322 LGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNL-KPQDSTIATLSVECSKALELD 380
           +G++P    ++  I  +       +G+ +L+ M+  N+ +P   T   L     KA   D
Sbjct: 351 VGVEPDVVLFNTLIDGLCKVGKEEDGLSLLEEMKMGNINRPNTVTYNCLIDGFFKAGNFD 410

Query: 381 LAEALLDQISR---CTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLF 436
            A  L  Q++      N    +  +       +  RA++ F +M+ K L+ +  TY  L 
Sbjct: 411 RAHELFRQMNEEGVQPNVITLNTLVDGLCKHGRVHRAVEFFNEMKGKGLKGNAATYTALI 470

Query: 437 SLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRE- 495
           S F  VN        F +             M  +      +   +L+  L   G + + 
Sbjct: 471 SAFCGVNNINRAMQCFEE-------------MLSSGCSPDAVVYYSLISGLCIAGRMNDA 517

Query: 496 --LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC 553
             ++     +   L    YN ++    + ++  R  E+  +M+  G+ P+  TYN +I  
Sbjct: 518 SVVVSKLKLAGFSLDRSCYNVLISGFCKKKKLERVYELLTEMEETGVKPDTITYNTLISY 577

Query: 554 CSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL-DLVSLEGIPH 612
                 F +AS ++  M+++G  P  +TY A+I       + DE + +  ++ S   +P 
Sbjct: 578 LGKTGDFATASKVMEKMIKEGLRPSVVTYGAIIHAYCSKKNVDEGMKIFGEMCSTSKVPP 637

Query: 613 DVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
           + ++YN ++   C    +D    ++E M   +V+P+ +T + +  G
Sbjct: 638 NTVIYNILIDALCRNNDVDRAISLMEDMKVKRVRPNTTTYNAILKG 683



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 77/371 (20%), Positives = 148/371 (39%), Gaps = 28/371 (7%)

Query: 303 CGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQ 362
           CG  +N G+A +++  +  LG    + + +  +  +   R ++   E+L  M++  ++P 
Sbjct: 257 CGDQKN-GVAWEVLHCVMRLGGAVDAASCNALLTWLGRGRDIKRMNELLAEMEKRKIRPS 315

Query: 363 DSTIATLSVECSKALELDLAEALLDQI-----SRCTNPKP----FSAFLAACDTMDKPER 413
             T   L     KA  +D A  + D++     S     +P    F+  +     + K E 
Sbjct: 316 VVTFGILVNHLCKARRIDEALQVFDRLRGKGGSNWVGVEPDVVLFNTLIDGLCKVGKEED 375

Query: 414 AIKIFAKMRQKL--RPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471
            + +  +M+     RP+  TY  L   F      ++ GN         R + +   M   
Sbjct: 376 GLSLLEEMKMGNINRPNTVTYNCLIDGF------FKAGNF-------DRAHELFRQMNEE 422

Query: 472 NIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPL---GTPTYNTVLHSLVEAQESHRA 528
            +Q + I++  L+  L   G +   +++F + K         TY  ++ +       +RA
Sbjct: 423 GVQPNVITLNTLVDGLCKHGRVHRAVEFFNEMKGKGLKGNAATYTALISAFCGVNNINRA 482

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
           M+ F++M + G  P+A  Y  +I    I      AS +VS +   GF      Y  LI  
Sbjct: 483 MQCFEEMLSSGCSPDAVVYYSLISGLCIAGRMNDASVVVSKLKLAGFSLDRSCYNVLISG 542

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
                  +    LL  +   G+  D + YNT++    + G       ++E+M +  ++P 
Sbjct: 543 FCKKKKLERVYELLTEMEETGVKPDTITYNTLISYLGKTGDFATASKVMEKMIKEGLRPS 602

Query: 649 PSTCHFVFSGY 659
             T   +   Y
Sbjct: 603 VVTYGAIIHAY 613



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 77/360 (21%), Positives = 142/360 (39%), Gaps = 39/360 (10%)

Query: 325 QPSSHTY----DGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELD 380
           +P++ TY    DGF +A   DR      E+ + M +  ++P   T+ TL     K   + 
Sbjct: 390 RPNTVTYNCLIDGFFKAGNFDRA----HELFRQMNEEGVQPNVITLNTLVDGLCKHGRVH 445

Query: 381 LAEALLDQISRCT---NPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLF 436
            A    +++       N   ++A ++A   ++   RA++ F +M      PD   Y  L 
Sbjct: 446 RAVEFFNEMKGKGLKGNAATYTALISAFCGVNNINRAMQCFEEMLSSGCSPDAVVYYSLI 505

Query: 437 S---LFGNVN-----------APYEEG--------NMFSQVDSAKRINAIEMDMARNNIQ 474
           S   + G +N           A +           + F +    +R+  +  +M    ++
Sbjct: 506 SGLCIAGRMNDASVVVSKLKLAGFSLDRSCYNVLISGFCKKKKLERVYELLTEMEETGVK 565

Query: 475 HSHISMKNLLKALGAEG---MIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEI 531
              I+   L+  LG  G      ++++            TY  ++H+    +     M+I
Sbjct: 566 PDTITYNTLISYLGKTGDFATASKVMEKMIKEGLRPSVVTYGAIIHAYCSKKNVDEGMKI 625

Query: 532 FKQM-KTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590
           F +M  T  +PPN   YNI+ID          A +L+  M      P T TY A++K + 
Sbjct: 626 FGEMCSTSKVPPNTVIYNILIDALCRNNDVDRAISLMEDMKVKRVRPNTTTYNAILKGVR 685

Query: 591 DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650
           D     +A  L+D +  E    D +    + +     G I+ ++  +E  +Q+   P  S
Sbjct: 686 DKKMLHKAFELMDRMVEEACRPDYITMEVLTEWLSAVGEIEKLKHFVEG-YQDSSYPASS 744



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/294 (19%), Positives = 118/294 (40%), Gaps = 21/294 (7%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A +   +M+  GL+ ++ TY   I A      +   M+  + M  +   P      +L  
Sbjct: 447 AVEFFNEMKGKGLKGNAATYTALISAFCGVNNINRAMQCFEEMLSSGCSPDAVVYYSLIS 506

Query: 372 ECSKALELDLAEALLDQISRCT---NPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRP 427
               A  ++ A  ++ ++       +   ++  ++      K ER  ++  +M +  ++P
Sbjct: 507 GLCIAGRMNDASVVVSKLKLAGFSLDRSCYNVLISGFCKKKKLERVYELLTEMEETGVKP 566

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL 487
           D  TY  L S  G               D A     +E  M +  ++ S ++   ++ A 
Sbjct: 567 DTITYNTLISYLGKTG------------DFATASKVME-KMIKEGLRPSVVTYGAIIHAY 613

Query: 488 GAEGMIRELIQYFCD----SKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPN 543
            ++  + E ++ F +    SK P  T  YN ++ +L    +  RA+ + + MK   + PN
Sbjct: 614 CSKKNVDEGMKIFGEMCSTSKVPPNTVIYNILIDALCRNNDVDRAISLMEDMKVKRVRPN 673

Query: 544 AATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDE 597
             TYN ++      +    A  L+  MV +   P  +T   L + L   G+ ++
Sbjct: 674 TTTYNAILKGVRDKKMLHKAFELMDRMVEEACRPDYITMEVLTEWLSAVGEIEK 727



 Score = 49.3 bits (116), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 90/452 (19%), Positives = 175/452 (38%), Gaps = 68/452 (15%)

Query: 3   RPLLRTRFQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQM--QIV 60
           RP + T F ++ +  CK+       R +   L++   L    G N   +     +   ++
Sbjct: 313 RPSVVT-FGILVNHLCKA-------RRIDEALQVFDRLRGKGGSNWVGVEPDVVLFNTLI 364

Query: 61  DALCR-GERSRASHLL--LNLGHAH------HSLGADDFFHILNYCARSPDPLFVMETWR 111
           D LC+ G+      LL  + +G+ +      ++   D FF   N+           E +R
Sbjct: 365 DGLCKVGKEEDGLSLLEEMKMGNINRPNTVTYNCLIDGFFKAGNFDR-------AHELFR 417

Query: 112 MMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGE--RYGIYPILPVYNSFLGACA 169
            M E+ +  N      ++  LCK G +  A   + F  E    G+      Y + + A  
Sbjct: 418 QMNEEGVQPNVITLNTLVDGLCKHGRVHRA---VEFFNEMKGKGLKGNAATYTALISAFC 474

Query: 170 KLHSMVHANLCLDLMDSRMVGKNEVTYTELLK-LAVWQKNLSAVHEIWEDYIKHYSLSIF 228
            ++++  A  C + M S     + V Y  L+  L +  +   A   + +  +  +SL   
Sbjct: 475 GVNNINRAMQCFEEMLSSGCSPDAVVYYSLISGLCIAGRMNDASVVVSKLKLAGFSLDRS 534

Query: 229 SLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPV 288
                +  F + + L+  YE L  M    +                              
Sbjct: 535 CYNVLISGFCKKKKLERVYELLTEMEETGV------------------------------ 564

Query: 289 MKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGM 348
            K    +++ +I   G+T +   A ++M +M   GL+PS  TY   I A  S + +  GM
Sbjct: 565 -KPDTITYNTLISYLGKTGDFATASKVMEKMIKEGLRPSVVTYGAIIHAYCSKKNVDEGM 623

Query: 349 EVLKIMQQNNLKPQDSTIATLSVEC-SKALELDLAEALLD--QISRC-TNPKPFSAFLAA 404
           ++   M   +  P ++ I  + ++   +  ++D A +L++  ++ R   N   ++A L  
Sbjct: 624 KIFGEMCSTSKVPPNTVIYNILIDALCRNNDVDRAISLMEDMKVKRVRPNTTTYNAILKG 683

Query: 405 CDTMDKPERAIKIFAKM-RQKLRPDIRTYELL 435
                   +A ++  +M  +  RPD  T E+L
Sbjct: 684 VRDKKMLHKAFELMDRMVEEACRPDYITMEVL 715


>gi|449453081|ref|XP_004144287.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Cucumis sativus]
 gi|449489420|ref|XP_004158306.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Cucumis sativus]
          Length = 720

 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 81/362 (22%), Positives = 153/362 (42%), Gaps = 16/362 (4%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +F  VI A G    +  AE +  +M+  GL+P    ++  ++       L+    ++  M
Sbjct: 318 TFVAVISALGNHGRTEEAEAIFEEMKEGGLKPRIKAFNALLKGYARKGSLKEAESIISEM 377

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQI-SRCTNPKPF--SAFLAACDTMDKP 411
           +++ L P + T   L    +     + A  LL Q+ +R   P  F  S  LA+     + 
Sbjct: 378 EKSGLSPDEHTYGLLVDAYANVGRWESARHLLKQMEARNVQPNTFIFSRILASYRDRGEW 437

Query: 412 ERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           ++  ++  +M+   ++PD   Y ++   FG  N        + ++ S      IE D+  
Sbjct: 438 QKTFEVLREMKNSNVKPDRHFYNVMIDTFGKFNCLDHAMETYDRMLS----EGIEPDVVT 493

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAME 530
            N      ++ +  +  G      EL +   +        TYN +++SL E ++      
Sbjct: 494 WN------TLIDCHRKHGYHDRAAELFEEMQERGYLPCPTTYNIMINSLGEQEKWDEVKI 547

Query: 531 IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590
           +  +M++ G+ PN  TY  ++D       F  A   +  M   G  P    Y ALI    
Sbjct: 548 LLGKMQSQGLLPNVVTYTTLVDIYGHSGRFNDAIDCLEAMKSAGLKPSATMYNALINAFA 607

Query: 591 DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEF-IIEQMHQNKVQPDP 649
             G  ++A+N   ++  +G+   +L  N+++    E  R D+  F I++ M +N V+PD 
Sbjct: 608 QRGLSEQAVNAYRVMISDGLRPSLLALNSLINAFGEDRR-DIEAFSILQYMKENDVKPDV 666

Query: 650 ST 651
            T
Sbjct: 667 VT 668



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 84/377 (22%), Positives = 152/377 (40%), Gaps = 31/377 (8%)

Query: 333 GFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRC 392
           GF +A   +R L      L ++Q + L P+ ST   +          + AEA+ +++   
Sbjct: 290 GFAKAGDPNRALY----FLSMVQASGLNPKTSTFVAVISALGNHGRTEEAEAIFEEMKEG 345

Query: 393 T-NP--KPFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEE 448
              P  K F+A L         + A  I ++M +  L PD  TY LL   + NV      
Sbjct: 346 GLKPRIKAFNALLKGYARKGSLKEAESIISEMEKSGLSPDEHTYGLLVDAYANVGRWESA 405

Query: 449 GNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLG 508
            ++  Q+++              N+Q +      +L +    G  ++  +   + K    
Sbjct: 406 RHLLKQMEA-------------RNVQPNTFIFSRILASYRDRGEWQKTFEVLREMKNSNV 452

Query: 509 TPT---YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASA 565
            P    YN ++ +  +      AME + +M + GI P+  T+N +IDC         A+ 
Sbjct: 453 KPDRHFYNVMIDTFGKFNCLDHAMETYDRMLSEGIEPDVVTWNTLIDCHRKHGYHDRAAE 512

Query: 566 LVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKAC 625
           L   M   G+ P   TY  +I  L +   +DE   LL  +  +G+  +V+ Y T++    
Sbjct: 513 LFEEMQERGYLPCPTTYNIMINSLGEQEKWDEVKILLGKMQSQGLLPNVVTYTTLVDIYG 572

Query: 626 EKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL-------SMR 678
             GR +     +E M    ++P  +  + + + +   G    A+ A +V+       S+ 
Sbjct: 573 HSGRFNDAIDCLEAMKSAGLKPSATMYNALINAFAQRGLSEQAVNAYRVMISDGLRPSLL 632

Query: 679 MLCEEVSTLEEKRSDFE 695
            L   ++   E R D E
Sbjct: 633 ALNSLINAFGEDRRDIE 649



 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 76/387 (19%), Positives = 165/387 (42%), Gaps = 16/387 (4%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGM--EVLK 352
           +++ +I AC R  +   A  LM +M+  G Q     Y   I+++     +   +  ++ +
Sbjct: 211 TYNALIGACARNNDLEKALNLMSRMRQDGFQSDFINYSLIIQSLTRTNKIDIPLLQKLYE 270

Query: 353 IMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI-SRCTNPKP--FSAFLAACDTMD 409
            ++ + ++     +  + +  +KA + + A   L  + +   NPK   F A ++A     
Sbjct: 271 EIESDKIELDGLLLNDIILGFAKAGDPNRALYFLSMVQASGLNPKTSTFVAVISALGNHG 330

Query: 410 KPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
           + E A  IF +M++  L+P I+ +  L   +    +  E  ++ S+++ +     +  D 
Sbjct: 331 RTEEAEAIFEEMKEGGLKPRIKAFNALLKGYARKGSLKEAESIISEMEKS----GLSPD- 385

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRA 528
                +H++  + +    +G     R L++          T  ++ +L S  +  E  + 
Sbjct: 386 -----EHTYGLLVDAYANVGRWESARHLLKQMEARNVQPNTFIFSRILASYRDRGEWQKT 440

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
            E+ ++MK   + P+   YN+MID      C   A      M+ +G  P  +T+  LI  
Sbjct: 441 FEVLREMKNSNVKPDRHFYNVMIDTFGKFNCLDHAMETYDRMLSEGIEPDVVTWNTLIDC 500

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
              +G  D A  L + +   G       YN ++    E+ + D ++ ++ +M    + P+
Sbjct: 501 HRKHGYHDRAAELFEEMQERGYLPCPTTYNIMINSLGEQEKWDEVKILLGKMQSQGLLPN 560

Query: 649 PSTCHFVFSGYVNCGFHNSAMEALQVL 675
             T   +   Y + G  N A++ L+ +
Sbjct: 561 VVTYTTLVDIYGHSGRFNDAIDCLEAM 587



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/327 (19%), Positives = 132/327 (40%), Gaps = 30/327 (9%)

Query: 381 LAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLF 439
           L EA +    +   P  ++A + AC   +  E+A+ + ++MRQ   + D   Y L+    
Sbjct: 195 LYEAFILSQKQTLTPLTYNALIGACARNNDLEKALNLMSRMRQDGFQSDFINYSLIIQSL 254

Query: 440 GNVNA---PYEEGNMFSQVDSAK------RINAIEMDMARNN-----------IQHSHIS 479
              N    P  +  ++ +++S K       +N I +  A+             +Q S ++
Sbjct: 255 TRTNKIDIPLLQ-KLYEEIESDKIELDGLLLNDIILGFAKAGDPNRALYFLSMVQASGLN 313

Query: 480 MKN-----LLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEI 531
            K      ++ ALG  G   E    F + K     P    +N +L           A  I
Sbjct: 314 PKTSTFVAVISALGNHGRTEEAEAIFEEMKEGGLKPRIKAFNALLKGYARKGSLKEAESI 373

Query: 532 FKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLD 591
             +M+  G+ P+  TY +++D  + +  ++SA  L+  M      P T  ++ ++    D
Sbjct: 374 ISEMEKSGLSPDEHTYGLLVDAYANVGRWESARHLLKQMEARNVQPNTFIFSRILASYRD 433

Query: 592 YGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
            G++ +   +L  +    +  D   YN ++    +   +D      ++M    ++PD  T
Sbjct: 434 RGEWQKTFEVLREMKNSNVKPDRHFYNVMIDTFGKFNCLDHAMETYDRMLSEGIEPDVVT 493

Query: 652 CHFVFSGYVNCGFHNSAMEALQVLSMR 678
            + +   +   G+H+ A E  + +  R
Sbjct: 494 WNTLIDCHRKHGYHDRAAELFEEMQER 520



 Score = 58.9 bits (141), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/249 (22%), Positives = 103/249 (41%), Gaps = 40/249 (16%)

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP-TYNTVLHSLVEAQESH 526
           + R+N+  S+  + ++L  + A G   +L + F  S+    TP TYN ++ +     +  
Sbjct: 169 LQRHNLCFSYELLYSIL--IHALGRSEKLYEAFILSQKQTLTPLTYNALIGACARNNDLE 226

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCS------------------------------- 555
           +A+ +  +M+  G   +   Y+++I   +                               
Sbjct: 227 KALNLMSRMRQDGFQSDFINYSLIIQSLTRTNKIDIPLLQKLYEEIESDKIELDGLLLND 286

Query: 556 IIRCFKSASA------LVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEG 609
           II  F  A         +SM+   G  P+T T+ A+I  L ++G  +EA  + + +   G
Sbjct: 287 IILGFAKAGDPNRALYFLSMVQASGLNPKTSTFVAVISALGNHGRTEEAEAIFEEMKEGG 346

Query: 610 IPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAM 669
           +   +  +N +LK    KG +   E II +M ++ + PD  T   +   Y N G   SA 
Sbjct: 347 LKPRIKAFNALLKGYARKGSLKEAESIISEMEKSGLSPDEHTYGLLVDAYANVGRWESAR 406

Query: 670 EALQVLSMR 678
             L+ +  R
Sbjct: 407 HLLKQMEAR 415


>gi|302783901|ref|XP_002973723.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
 gi|300158761|gb|EFJ25383.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
          Length = 581

 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 117/547 (21%), Positives = 232/547 (42%), Gaps = 41/547 (7%)

Query: 106 VMETWRMMEE-KEIGLNNKC--YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYN 162
           V E   M+EE  E G+N     Y +++  LC+ G ++EA  L + + ER G       YN
Sbjct: 26  VTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGKVDEADELFHKMIER-GCSANTVAYN 84

Query: 163 SFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDY-IK 221
           + +    K  ++  A   L+ M S+    + +TY  +L        +S   + ++    +
Sbjct: 85  ALINGLCKDENIERAYKLLEEMASKGYEPDNITYNTILSGLCRMGKVSEAKQFFDSMPSR 144

Query: 222 HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHM------VALAMMGKLYINRTSEGRLRSS 275
            YS  + +    + +  +   +  A+   + M      VA  +   +  N   +G  R  
Sbjct: 145 GYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRKVAPDL---ITYNTLIDGFCRVE 201

Query: 276 RLDIPIPLNALPVMKVL---RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYD 332
           + D  + L    + K       +++ ++    R  N   AE++  +M   G  P+  TY 
Sbjct: 202 KTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVDSGCAPNGATYS 261

Query: 333 GFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTI--ATLSVECSKALELDLAEALLDQIS 390
             +        +   +E+ + M +    P D  +  A + + C KA ++D A  +L+++S
Sbjct: 262 IVLSGHCRVGNMARCLELYEEMTEKRFSP-DVLLCNAVIDMLC-KAKKVDDAHKVLEEMS 319

Query: 391 RCTNPKPFSAFLAACDTMDKP---ERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPY 446
           +         +    D + K    ++A ++F+ M      PDI +Y ++ +     N  +
Sbjct: 320 KIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVH 379

Query: 447 EEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTP 506
           +   +F ++   K +          ++   +I M  L KA G     ++L+    +    
Sbjct: 380 DARVLFDRMIERKLVP---------DVVTFNILMDGLCKA-GKLDEAKDLLDVMSEHNVL 429

Query: 507 LGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASAL 566
               T  T++H L   + +  A+ +F+ M   G   +   +NI++    + R  K A AL
Sbjct: 430 PDGVTCTTLMHGLCRDKRTDEAVRLFQYMVEKGTVADVLPHNIVL--AGLCREGKLAQAL 487

Query: 567 V---SMMVRDG-FYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILK 622
           +   SM+  DG F P  +TYT L+  L++ G  D+A++    ++  G   D + YNT++ 
Sbjct: 488 LFFKSMVKSDGEFSPDVVTYTTLVNALIEAGRVDQAVDYFQQMTGSGCAPDYVAYNTLMN 547

Query: 623 KACEKGR 629
              ++GR
Sbjct: 548 GLRKQGR 554



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 81/378 (21%), Positives = 157/378 (41%), Gaps = 31/378 (8%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A++L  +M   G   ++  Y+  I  +  D  +    ++L+ M     +P + T  T+  
Sbjct: 64  ADELFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNTILS 123

Query: 372 ECSKALELDLAEALLDQI-SRCTNPK--PFSAFLAACDTMDKPERAIKIFAKMR---QKL 425
              +  ++  A+   D + SR  +P    ++  L A     K   A  +F  M    +K+
Sbjct: 124 GLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRKV 183

Query: 426 RPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI------NAIEMDMAR-NNIQHSHI 478
            PD+ TY  L   F  V    E   +F  V +   +      N+I + +AR +N+  +  
Sbjct: 184 APDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEE 243

Query: 479 SMKNLLKA------------------LGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLV 520
             K ++ +                  +G      EL +   + +        N V+  L 
Sbjct: 244 MFKKMVDSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLC 303

Query: 521 EAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTM 580
           +A++   A ++ ++M   G  P+  TYNI++D          A  L S MV +G  P  +
Sbjct: 304 KAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIV 363

Query: 581 TYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQM 640
           +Y+ ++  L       +A  L D +    +  DV+ +N ++   C+ G++D  + +++ M
Sbjct: 364 SYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDVM 423

Query: 641 HQNKVQPDPSTCHFVFSG 658
            ++ V PD  TC  +  G
Sbjct: 424 SEHNVLPDGVTCTTLMHG 441



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 90/380 (23%), Positives = 147/380 (38%), Gaps = 49/380 (12%)

Query: 319 MQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALE 378
           M   G +P   TY   I  +     +   +E+++ M +  + P  +T   +     +A +
Sbjct: 1   MAEKGFEPDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGK 60

Query: 379 LDLAEALLDQ-ISR-CT-NPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYEL 434
           +D A+ L  + I R C+ N   ++A +      +  ERA K+  +M  K   PD  TY  
Sbjct: 61  VDEADELFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNT 120

Query: 435 LFSLF-----------------------------GNVNAPYEEGNMFSQVDSAKRINAIE 465
           + S                               G ++A Y+EG +       K      
Sbjct: 121 ILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKT----- 175

Query: 466 MDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEA 522
           MDMA   +    I+   L+          E ++ F D       P   TYN++L  L   
Sbjct: 176 MDMADRKVAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARK 235

Query: 523 QESHRAMEIFKQMKTCGIPPNAATYNIMID----CCSIIRCFKSASALVSMMVRDGFYPQ 578
                A E+FK+M   G  PN ATY+I++       ++ RC +    L   M    F P 
Sbjct: 236 SNMDEAEEMFKKMVDSGCAPNGATYSIVLSGHCRVGNMARCLE----LYEEMTEKRFSPD 291

Query: 579 TMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIE 638
            +   A+I +L      D+A  +L+ +S  G   DV+ YN +L   C+   +D    +  
Sbjct: 292 VLLCNAVIDMLCKAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFS 351

Query: 639 QMHQNKVQPDPSTCHFVFSG 658
            M  N   PD  +   V +G
Sbjct: 352 TMVDNGCAPDIVSYSVVLNG 371



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 112/576 (19%), Positives = 217/576 (37%), Gaps = 57/576 (9%)

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
           M EK    +   Y  ++  LCK G + EA  ++  + E+ G+ P +  Y   +    +  
Sbjct: 1   MAEKGFEPDVVTYSTIISGLCKTGKVTEALEMVEEMTEK-GVNPDVATYTIIVDRLCRAG 59

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYSLSIFSLR 231
            +  A+     M  R    N V Y  L+      +N+   +++ E+   K Y     +  
Sbjct: 60  KVDEADELFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYN 119

Query: 232 KFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKV 291
             +    R+  +  A +    M +                 R    D+ +  N L     
Sbjct: 120 TILSGLCRMGKVSEAKQFFDSMPS-----------------RGYSPDV-VAYNGL----- 156

Query: 292 LRWSFSDVIHACGRTQNS-GLAEQLMLQMQSLGLQPSSHTY----DGFIRAIVSDRGLRN 346
                 D ++  G+   + GL + +   M    + P   TY    DGF R   +D     
Sbjct: 157 -----LDALYKEGKVAEAWGLFKTM--DMADRKVAPDLITYNTLIDGFCRVEKTDEA--- 206

Query: 347 GMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI--SRCT-NPKPFSAFLA 403
            M++ K +      P   T  ++ +  ++   +D AE +  ++  S C  N   +S  L+
Sbjct: 207 -MKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVDSGCAPNGATYSIVLS 265

Query: 404 ACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRIN 462
               +    R ++++ +M +K   PD+     +  +        +   +  ++    +I 
Sbjct: 266 GHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLCKAKKVDDAHKVLEEM---SKIG 322

Query: 463 AIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEA 522
           A+  D+   NI    +   NL+          EL     D+       +Y+ VL+ L + 
Sbjct: 323 AVP-DVVTYNILLDGLCKTNLVDK------AHELFSTMVDNGCAPDIVSYSVVLNGLCKT 375

Query: 523 QESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTY 582
            + H A  +F +M    + P+  T+NI++D          A  L+ +M      P  +T 
Sbjct: 376 NKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDVMSEHNVLPDGVTC 435

Query: 583 TALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQM-- 640
           T L+  L      DEA+ L   +  +G   DVL +N +L   C +G++       + M  
Sbjct: 436 TTLMHGLCRDKRTDEAVRLFQYMVEKGTVADVLPHNIVLAGLCREGKLAQALLFFKSMVK 495

Query: 641 HQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
              +  PD  T   + +  +  G  + A++  Q ++
Sbjct: 496 SDGEFSPDVVTYTTLVNALIEAGRVDQAVDYFQQMT 531



 Score = 62.8 bits (151), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 66/292 (22%), Positives = 120/292 (41%), Gaps = 17/292 (5%)

Query: 398 FSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVD 456
           +S  ++      K   A+++  +M +K + PD+ TY ++           E   +F ++ 
Sbjct: 13  YSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGKVDEADELFHKM- 71

Query: 457 SAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVL 516
                  IE   + N + ++ + +  L K    E   + L +       P    TYNT+L
Sbjct: 72  -------IERGCSANTVAYNAL-INGLCKDENIERAYKLLEEMASKGYEP-DNITYNTIL 122

Query: 517 HSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASA---LVSMMVRD 573
             L    +   A + F  M + G  P+   YN ++D  ++ +  K A A     +M + D
Sbjct: 123 SGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLD--ALYKEGKVAEAWGLFKTMDMAD 180

Query: 574 -GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDV 632
               P  +TY  LI         DEA+ L   V  +G   D + YN+IL     K  +D 
Sbjct: 181 RKVAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDE 240

Query: 633 IEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEV 684
            E + ++M  +   P+ +T   V SG+   G     +E  + ++ +    +V
Sbjct: 241 AEEMFKKMVDSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDV 292


>gi|449459086|ref|XP_004147277.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
 gi|449501214|ref|XP_004161309.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
          Length = 908

 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 124/571 (21%), Positives = 239/571 (41%), Gaps = 43/571 (7%)

Query: 128 MMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSR 187
           +++ L K G +E A  L+  +G + G+ P L VYNS + +  K   +  A L   +M  R
Sbjct: 336 LIEGLIKMGSIEGAFELLNKVG-KLGVVPNLFVYNSMINSLCKTGKLEEAELLFSVMAER 394

Query: 188 MVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK-HYSLSIFSLRKFVWSFTRLRDLKSA 246
            +  N+VTYT L+     +  L      +   I+   S +++S    +    +   +K A
Sbjct: 395 GLNPNDVTYTILIDGFGRRAKLDVAFYYFNKMIECGISATVYSYNSMINCQCKFGKMKMA 454

Query: 247 YETLQHMV------ALAMMGKLYINRTSEGRL-RSSRLDIPIPLNALPVMKVLRWSFSDV 299
               + MV       +A    L      +G + ++ +L   +    +    V   +F+ +
Sbjct: 455 ELLFKEMVDKGLKPTVATYTSLISGYCKDGLVPKAFKLYHEMTGKGIAPNTV---TFTAL 511

Query: 300 IHACGRTQNSGLAE--QLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQN 357
           I  CG  Q + +AE  +L  +M  L + P+  TY+  I     +       E+L  M + 
Sbjct: 512 I--CGLCQINKMAEASKLFDEMVELKILPNEVTYNVLIEGHCREGNTTRAFELLDEMIKK 569

Query: 358 NLKPQDSTIATLSVECSKALELDLAEALLDQIS---RCTNPKPFSAFLAA-CDTMDKPER 413
            L P   T   L         +  A+  ++ +    +  +   ++A L   C      E 
Sbjct: 570 GLSPDTYTYRPLIAGLCSTGRVSEAKEFINDLHHKHQRLDELCYTALLQGFCKEGRIKEA 629

Query: 414 AIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNI 473
            +     + + L+ D+ +Y +L S  G +N             + + +  +  +M    +
Sbjct: 630 LVARQEMVGRGLQMDLVSYAVLIS--GALN------------QNDRILFELLREMHGKGM 675

Query: 474 QHSHISMKNLLKALGAEGMIRELIQYF----CDSKTPLGTPTYNTVLHSLVEAQESHRAM 529
           Q  ++    L+      G +++  +++     +   P  + TY  +++ L +A   + A 
Sbjct: 676 QPDNVIYTILIDGFIKSGNLKKAFEFWYIMIGEGYVP-NSVTYTALVNGLFKAGYVNEAK 734

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
            +FK+M      PN  TY   +D  +     ++A  L + M++ G +  T+TY  LI+  
Sbjct: 735 LLFKRMLVGEAIPNHITYGCFLDHLTKEGNMENALQLHNAMLQ-GSFANTVTYNILIRGY 793

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649
              G F EA  LLD++   G+  D + Y+T + + C++G +D    + E M Q  ++PD 
Sbjct: 794 CQIGKFQEAAKLLDVMIGIGMVPDCITYSTFIYEYCKRGNVDAAMDMWECMLQRGLKPDR 853

Query: 650 STCHFVFSGYVNCGFHNSAMEALQVLSMRML 680
              +F+      C  +     ALQ+ +  ML
Sbjct: 854 VVFNFLIHA---CCLNGELDRALQLRNDMML 881



 Score = 73.2 bits (178), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 103/517 (19%), Positives = 191/517 (36%), Gaps = 61/517 (11%)

Query: 213 HEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMV--ALAMMGKLYINRTSEG 270
           H+I+E++ + Y       +K+ +S +   D+      +QH V     M G L +N   + 
Sbjct: 137 HQIFENFFESY-------KKYKFSSSSGFDM-----LIQHYVQNKRVMDGVLVVNLMRDY 184

Query: 271 RLRSSRLDIPIPLNALPVMKVLR------------------WSFSDVIHACGRTQNSGLA 312
            L      +   LNAL  ++  R                  + ++ V+      ++   A
Sbjct: 185 GLLPEVRTLSALLNALARIRKFRQVLELFDTLVNAGVKPDCYIYTVVVKCLCELKDFNKA 244

Query: 313 EQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVE 372
           ++++ Q +  G   S  TY+ FI  +   + +   +EV + + +  LK    T  TL + 
Sbjct: 245 KEIINQAEGNGCSLSIVTYNVFINGLCKSKRVWEAVEVKRSLGEKGLKADLVTYCTLVLG 304

Query: 373 CSKALELDLAEALLDQ---ISRCTNPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLRPD 428
             +  E ++   ++D+   +    +    S  +     M   E A ++  K+ +  + P+
Sbjct: 305 LCRIQEFEVGMEMMDEMIELGYVPSEAAVSGLIEGLIKMGSIEGAFELLNKVGKLGVVPN 364

Query: 429 IRTY----------------ELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNN 472
           +  Y                ELLFS+         +      +D   R   +++     N
Sbjct: 365 LFVYNSMINSLCKTGKLEEAELLFSVMAERGLNPNDVTYTILIDGFGRRAKLDVAFYYFN 424

Query: 473 ---------IQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQ 523
                      +S+ SM N     G   M   L +   D        TY +++    +  
Sbjct: 425 KMIECGISATVYSYNSMINCQCKFGKMKMAELLFKEMVDKGLKPTVATYTSLISGYCKDG 484

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
              +A +++ +M   GI PN  T+  +I     I     AS L   MV     P  +TY 
Sbjct: 485 LVPKAFKLYHEMTGKGIAPNTVTFTALICGLCQINKMAEASKLFDEMVELKILPNEVTYN 544

Query: 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
            LI+     G+   A  LLD +  +G+  D   Y  ++   C  GR+   +  I  +H  
Sbjct: 545 VLIEGHCREGNTTRAFELLDEMIKKGLSPDTYTYRPLIAGLCSTGRVSEAKEFINDLHHK 604

Query: 644 KVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRML 680
             + D      +  G+   G    A+ A Q +  R L
Sbjct: 605 HQRLDELCYTALLQGFCKEGRIKEALVARQEMVGRGL 641



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 104/530 (19%), Positives = 200/530 (37%), Gaps = 60/530 (11%)

Query: 144 LIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLA 203
           L+  L   YG+ P +   ++ L A A++          D + +  V  +   YT ++K  
Sbjct: 176 LVVNLMRDYGLLPEVRTLSALLNALARIRKFRQVLELFDTLVNAGVKPDCYIYTVVVKCL 235

Query: 204 VWQKNLSAVHEIWEDYIKHY-SLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKL 262
              K+ +   EI      +  SLSI +   F+    + + +  A E  + +    +   L
Sbjct: 236 CELKDFNKAKEIINQAEGNGCSLSIVTYNVFINGLCKSKRVWEAVEVKRSLGEKGLKADL 295

Query: 263 Y--------INRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQ 314
                    + R  E  +    +D  I L  +P       + S +I    +  +   A +
Sbjct: 296 VTYCTLVLGLCRIQEFEVGMEMMDEMIELGYVPS----EAAVSGLIEGLIKMGSIEGAFE 351

Query: 315 LMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECS 374
           L+ ++  LG+ P+   Y+  I ++     L     +  +M +  L P D T   L     
Sbjct: 352 LLNKVGKLGVVPNLFVYNSMINSLCKTGKLEEAELLFSVMAERGLNPNDVTYTILIDGFG 411

Query: 375 KALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYEL 434
           +  +LD+A    +++  C      SA + + ++M   +     F KM+          EL
Sbjct: 412 RRAKLDVAFYYFNKMIEC----GISATVYSYNSMINCQCK---FGKMKMA--------EL 456

Query: 435 LFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIR 494
           LF                              +M    ++ +  +  +L+     +G++ 
Sbjct: 457 LFK-----------------------------EMVDKGLKPTVATYTSLISGYCKDGLVP 487

Query: 495 ELIQYF---CDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI 551
           +  + +           T T+  ++  L +  +   A ++F +M    I PN  TYN++I
Sbjct: 488 KAFKLYHEMTGKGIAPNTVTFTALICGLCQINKMAEASKLFDEMVELKILPNEVTYNVLI 547

Query: 552 DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIP 611
           +          A  L+  M++ G  P T TY  LI  L   G   EA   ++ +  +   
Sbjct: 548 EGHCREGNTTRAFELLDEMIKKGLSPDTYTYRPLIAGLCSTGRVSEAKEFINDLHHKHQR 607

Query: 612 HDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVN 661
            D L Y  +L+  C++GRI       ++M    +Q D  +   + SG +N
Sbjct: 608 LDELCYTALLQGFCKEGRIKEALVARQEMVGRGLQMDLVSYAVLISGALN 657



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 84/401 (20%), Positives = 157/401 (39%), Gaps = 37/401 (9%)

Query: 319 MQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKAL- 377
           M+  GL P   T    + A+   R  R  +E+   +    +KP D  I T+ V+C   L 
Sbjct: 181 MRDYGLLPEVRTLSALLNALARIRKFRQVLELFDTLVNAGVKP-DCYIYTVVVKCLCELK 239

Query: 378 ELDLAEALLDQI--SRCT-NPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYE 433
           + + A+ +++Q   + C+ +   ++ F+       +   A+++   + +K L+ D+ TY 
Sbjct: 240 DFNKAKEIINQAEGNGCSLSIVTYNVFINGLCKSKRVWEAVEVKRSLGEKGLKADLVTYC 299

Query: 434 LLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKN------LLKAL 487
            L      +   +E G     +D    +  +  + A + +    I M +      LL  +
Sbjct: 300 TLVLGLCRIQ-EFEVG--MEMMDEMIELGYVPSEAAVSGLIEGLIKMGSIEGAFELLNKV 356

Query: 488 GAEGMIRELIQY--FCDSKTPLGT--------------------PTYNTVLHSLVEAQES 525
           G  G++  L  Y    +S    G                      TY  ++       + 
Sbjct: 357 GKLGVVPNLFVYNSMINSLCKTGKLEEAELLFSVMAERGLNPNDVTYTILIDGFGRRAKL 416

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
             A   F +M  CGI     +YN MI+C       K A  L   MV  G  P   TYT+L
Sbjct: 417 DVAFYYFNKMIECGISATVYSYNSMINCQCKFGKMKMAELLFKEMVDKGLKPTVATYTSL 476

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           I      G   +A  L   ++ +GI  + + +  ++   C+  ++     + ++M + K+
Sbjct: 477 ISGYCKDGLVPKAFKLYHEMTGKGIAPNTVTFTALICGLCQINKMAEASKLFDEMVELKI 536

Query: 646 QPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
            P+  T + +  G+   G    A E L  +  + L  +  T
Sbjct: 537 LPNEVTYNVLIEGHCREGNTTRAFELLDEMIKKGLSPDTYT 577



 Score = 58.9 bits (141), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 93/491 (18%), Positives = 183/491 (37%), Gaps = 67/491 (13%)

Query: 110 WRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACA 169
           ++ M +K +      Y  ++   CK G + +A  L + +  + GI P    + + +    
Sbjct: 458 FKEMVDKGLKPTVATYTSLISGYCKDGLVPKAFKLYHEMTGK-GIAPNTVTFTALICGLC 516

Query: 170 KLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH-YSLSIF 228
           +++ M  A+   D M    +  NEVTY  L++    + N +   E+ ++ IK   S   +
Sbjct: 517 QINKMAEASKLFDEMVELKILPNEVTYNVLIEGHCREGNTTRAFELLDEMIKKGLSPDTY 576

Query: 229 SLRKFVWSFTR----------LRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLD 278
           + R  +               + DL   ++ L  +   A++         EGR++ + + 
Sbjct: 577 TYRPLIAGLCSTGRVSEAKEFINDLHHKHQRLDELCYTALLQGF----CKEGRIKEALVA 632

Query: 279 IPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAI 338
               +     M ++ ++   V+ +    QN  +  +L+ +M   G+QP +  Y   I   
Sbjct: 633 RQEMVGRGLQMDLVSYA---VLISGALNQNDRILFELLREMHGKGMQPDNVIYTILIDGF 689

Query: 339 VSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI---SRCTNP 395
           +    L+   E   IM      P   T   L     KA  ++ A+ L  ++       N 
Sbjct: 690 IKSGNLKKAFEFWYIMIGEGYVPNSVTYTALVNGLFKAGYVNEAKLLFKRMLVGEAIPNH 749

Query: 396 KPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQV 455
             +  FL         E A+++   M Q    +  TY +L   +  +   ++E       
Sbjct: 750 ITYGCFLDHLTKEGNMENALQLHNAMLQGSFANTVTYNILIRGYCQI-GKFQE------- 801

Query: 456 DSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTV 515
            +AK                       LL  +   GM+ + I             TY+T 
Sbjct: 802 -AAK-----------------------LLDVMIGIGMVPDCI-------------TYSTF 824

Query: 516 LHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGF 575
           ++   +      AM++++ M   G+ P+   +N +I  C +      A  L + M+  G 
Sbjct: 825 IYEYCKRGNVDAAMDMWECMLQRGLKPDRVVFNFLIHACCLNGELDRALQLRNDMMLRGL 884

Query: 576 YPQTMTYTALI 586
            P   TY +L+
Sbjct: 885 KPTQSTYHSLM 895


>gi|359479250|ref|XP_002275790.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Vitis vinifera]
          Length = 746

 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 95/383 (24%), Positives = 155/383 (40%), Gaps = 22/383 (5%)

Query: 311 LAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLS 370
           + E L+L   + G  P    +D  +R  V  R LR G E  ++++   L    +   +L 
Sbjct: 169 IVESLVLTYGNCGSNP--LVFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLL 226

Query: 371 VECSKALELDLAEALLDQISRC---TNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LR 426
               K   +DLA  +  ++ R     N    +  + A     K E      + M +K + 
Sbjct: 227 GGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVF 286

Query: 427 PDIRTYELLFSLFGNVNAPYEEG---NMFSQVDSAKRINAIEMDMARNNIQHSHISMKNL 483
           PD+ TY  L      +NA   +G     F  +DS             N I +        
Sbjct: 287 PDVVTYNTL------INAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTG-- 338

Query: 484 LKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPN 543
            K L A+G++ E+++      +P  T TYN +L           A  IF +M + G+ P+
Sbjct: 339 -KYLRAKGVLDEMLKI---GMSP-DTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPD 393

Query: 544 AATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLD 603
             +++ +I   S   C   A      M   G  P  + YT LI      G   EAL + D
Sbjct: 394 LVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRD 453

Query: 604 LVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
            +  +G   DV+ YNTIL   C++  +   + +  +M +  V PD  T   + +GY   G
Sbjct: 454 EMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDG 513

Query: 664 FHNSAMEALQVLSMRMLCEEVST 686
             N A+   +++  R L  +V T
Sbjct: 514 NMNKAVTLFEMMIQRNLKPDVVT 536



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 98/427 (22%), Positives = 164/427 (38%), Gaps = 67/427 (15%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A +LM  M   GL+P   TY+  I  +           VL  M +  + P  +T   L V
Sbjct: 308 AFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLV 367

Query: 372 ECSKALELDLAEALLDQI-SRCTNPK--PFSAFLAACDTMDKPERAIKIFAKMRQK-LRP 427
           EC +   +  AE + D++ S+   P    FSA +         ++A+K F  M+   L P
Sbjct: 368 ECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAP 427

Query: 428 DIRTYELLFSLF---GNVNAP-------YEEGNMFSQVDSAKRINAI-------EMD--- 467
           D   Y +L   F   G ++          E+G +   V     +N +       E D   
Sbjct: 428 DNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELF 487

Query: 468 --MARNNIQHSHISMKNLLKALGAEGMIRELIQYF---CDSKTPLGTPTYNTVLHSLVEA 522
             M    +     +   L+     +G + + +  F             TYNT++    + 
Sbjct: 488 TEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKG 547

Query: 523 QESHRAMEIFKQMKTCGIPPNAATYNIMID-----------------------------C 553
            E  +  E++  M +  I PN  +Y I+I+                             C
Sbjct: 548 SEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITC 607

Query: 554 CSIIRCF------KSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSL 607
            +I++ +        A   +S M+  G  P  +TY  LI   +   + D A  L++ +  
Sbjct: 608 NTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMEN 667

Query: 608 EGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNS 667
            G+  DV+ YN IL     +GR+   E I+ +M +  V PD ST   + +G+V     N+
Sbjct: 668 SGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVT---QNN 724

Query: 668 AMEALQV 674
             EA +V
Sbjct: 725 LKEAFRV 731



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 110/518 (21%), Positives = 207/518 (39%), Gaps = 70/518 (13%)

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
           MEEK +  +   Y  ++ A C+ G LEEA  L+  +  + G+ P +  YN+ +    K  
Sbjct: 280 MEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGK-GLKPCVFTYNAIINGLCKTG 338

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDY--------IKHYS 224
             + A   LD M    +  +  TY  LL       N+     I+++         +  +S
Sbjct: 339 KYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFS 398

Query: 225 LSIFSLRK---FVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRT-SEG-RLRSSRLDI 279
             I  L K      +    RD+K+A     +++   ++G    N   SE  ++R   L+ 
Sbjct: 399 ALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQ 458

Query: 280 PIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIV 339
              L+ +        +++ +++   + +    A++L  +M   G+ P  +T+   I    
Sbjct: 459 GCVLDVV--------TYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYS 510

Query: 340 SDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALL-DQISRCTNPK-- 396
            D  +   + + ++M Q NLKP   T  TL     K  E++    L  D ISR   P   
Sbjct: 511 KDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHI 570

Query: 397 PFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVD 456
            +   +     M     A +++ +M +K       +E        +   Y          
Sbjct: 571 SYGILINGYCNMGCVSEAFRLWDEMVEK------GFEATIITCNTIVKGY---------- 614

Query: 457 SAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVL 516
             +  NA++ D   +N+         LLK +  +G+                  TYNT++
Sbjct: 615 -CRAGNAVKADEFLSNM---------LLKGIVPDGI------------------TYNTLI 646

Query: 517 HSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFY 576
           +  ++ +   RA  +  +M+  G+ P+  TYN++++  S     + A  ++  M+  G  
Sbjct: 647 NGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVN 706

Query: 577 PQTMTYTALIKILLDYGDFDEALNLLDLVSLEG-IPHD 613
           P   TYT+LI   +   +  EA  + D +   G +P D
Sbjct: 707 PDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVPDD 744



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 79/362 (21%), Positives = 153/362 (42%), Gaps = 24/362 (6%)

Query: 311 LAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL- 369
           LA ++  ++   G+Q + +T +  I A+  ++ + N    L  M++  + P   T  TL 
Sbjct: 237 LAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLI 296

Query: 370 SVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDKPERAIKIFAKM-RQK 424
           +  C + L L+ A  L+D +S     KP    ++A +       K  RA  +  +M +  
Sbjct: 297 NAYCRQGL-LEEAFELMDSMSG-KGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIG 354

Query: 425 LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLL 484
           + PD  TY +L      V     +  M      A+RI     +M    +    +S   L+
Sbjct: 355 MSPDTATYNILL-----VECCRNDNMM-----DAERIFD---EMPSQGVVPDLVSFSALI 401

Query: 485 KALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIP 541
             L   G + + ++YF D K     P    Y  ++           A+++  +M   G  
Sbjct: 402 GLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCV 461

Query: 542 PNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNL 601
            +  TYN +++     +    A  L + M   G +P   T+T LI      G+ ++A+ L
Sbjct: 462 LDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTL 521

Query: 602 LDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVN 661
            +++    +  DV+ YNT++   C+   ++ +  +   M   ++ P+  +   + +GY N
Sbjct: 522 FEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCN 581

Query: 662 CG 663
            G
Sbjct: 582 MG 583


>gi|298204410|emb|CBI16890.3| unnamed protein product [Vitis vinifera]
          Length = 653

 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 87/161 (54%), Gaps = 1/161 (0%)

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           +N ++H+  ++ +  +A ++  +M++  I P+  TYN +I           A  +   M 
Sbjct: 225 FNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEALGIQDRME 284

Query: 572 RDGFYPQTMTYTALI-KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           R G  P  +TY +LI     +  D +EAL L +++ +EG+   V+ YN+IL+K CE+G+I
Sbjct: 285 RGGVSPDIVTYNSLIYGFCREVNDLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKI 344

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEA 671
                ++ +M + KV+PD  TC+ + + Y   G   SAM+ 
Sbjct: 345 KDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKV 385



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 83/377 (22%), Positives = 160/377 (42%), Gaps = 21/377 (5%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A Q+   M+  G +P  H     + ++   R      +V K M +  + P       L  
Sbjct: 171 AIQVFEHMRVHGFKPHLHACTVLLNSLAKARLTNMVWKVYKKMVRVGVVPNIHIFNVLIH 230

Query: 372 ECSKALELDLAEALLDQI-SRCTNPKPFS--AFLAACDTMDKPERAIKIFAKM-RQKLRP 427
            C K+ +++ AE LL+++ SR   P  F+    ++          A+ I  +M R  + P
Sbjct: 231 ACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEALGIQDRMERGGVSP 290

Query: 428 DIRTY-ELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKA 486
           DI TY  L++     VN           ++ A R+  +   M    +    ++  ++L+ 
Sbjct: 291 DIVTYNSLIYGFCREVN----------DLEEALRLREV---MEVEGLHPGVVTYNSILRK 337

Query: 487 LGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPN 543
           L  EG I++   L+    + K      T NT++++  +  +   AM++ K+M   G+ P+
Sbjct: 338 LCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKPD 397

Query: 544 AATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLD 603
             T+  +I     +    SA   +  M+  GF P   TY+ L+    D  + +  + L D
Sbjct: 398 QFTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSPSYSTYSWLVDSYYDQDNKEAVIRLPD 457

Query: 604 LVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
            +S +G+  D+ +Y  ++++ C+  +I+  E I   M    ++ D      +   Y   G
Sbjct: 458 ELSRKGLFVDISVYRALIRRLCKIDKIESAERIFTLMQGKGMKGDSVVYTSLAYAYFKAG 517

Query: 664 FHNSAMEALQVLSMRML 680
              +A + L  +  R L
Sbjct: 518 KAIAASDMLDEMDKRRL 534



 Score = 44.7 bits (104), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 73/328 (22%), Positives = 136/328 (41%), Gaps = 28/328 (8%)

Query: 151 RYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLS 210
           R G+ P + ++N  + AC K   +  A   L+ M+SR +  +  TY  L+ L   +K + 
Sbjct: 215 RVGVVPNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYC-KKGMH 273

Query: 211 AVHEIWEDYIKHYSLS--IFSLRKFVWSFTR-LRDLKSAYETLQHMVALAMM-GKLYINR 266
                 +D ++   +S  I +    ++ F R + DL+ A    + M    +  G +  N 
Sbjct: 274 YEALGIQDRMERGGVSPDIVTYNSLIYGFCREVNDLEEALRLREVMEVEGLHPGVVTYNS 333

Query: 267 T-----SEGRLR-SSRLDIPIPLNALPVMKVL--RWSFSDVIHACGRTQNSGLAEQLMLQ 318
                  EG+++ ++RL     LN +   KV     + + +I+A  +  + G A ++  +
Sbjct: 334 ILRKLCEEGKIKDANRL-----LNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKKK 388

Query: 319 MQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALE 378
           M   GL+P   T+   I        + +  E L  M      P  ST + L        +
Sbjct: 389 MLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSPSYSTYSWL---VDSYYD 445

Query: 379 LDLAEALL---DQISR---CTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRT 431
            D  EA++   D++SR     +   + A +     +DK E A +IF  M+ K ++ D   
Sbjct: 446 QDNKEAVIRLPDELSRKGLFVDISVYRALIRRLCKIDKIESAERIFTLMQGKGMKGDSVV 505

Query: 432 YELLFSLFGNVNAPYEEGNMFSQVDSAK 459
           Y  L   +          +M  ++D  +
Sbjct: 506 YTSLAYAYFKAGKAIAASDMLDEMDKRR 533


>gi|293335157|ref|NP_001169529.1| uncharacterized protein LOC100383403 [Zea mays]
 gi|224029903|gb|ACN34027.1| unknown [Zea mays]
 gi|414887232|tpg|DAA63246.1| TPA: hypothetical protein ZEAMMB73_160132 [Zea mays]
          Length = 819

 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 135/643 (20%), Positives = 251/643 (39%), Gaps = 129/643 (20%)

Query: 75  LLNLGHAHHSLGADDFFHILNYC-----ARSPDPLFVME------------TWRMMEEKE 117
           LL L HA     AD    +LN C     AR   PL + E             +R M+ +E
Sbjct: 93  LLALPHAD----ADAVDAVLN-CWAGRFARRNFPLLIREIAISGSLKHAVHVFRWMKNQE 147

Query: 118 -IGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVH 176
                N  Y +M++   +   +++A  L +F  + +   P    YNS + A A+      
Sbjct: 148 NYCARNDIYGMMIRLHARHNKVDQARGL-FFEMQEWRCKPNTDTYNSLIHAHARAGQWCW 206

Query: 177 ANLCLDLMDSRMVGKNEVTYTELLKL----AVWQKNLSAVHEIWE-----DYIKH-YSLS 226
           A   +D M    +  +  TY  ++        W+K L    ++ E     D I H   LS
Sbjct: 207 AINIMDDMQRAAIPPSRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLITHNIVLS 266

Query: 227 IFS----LRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIP 282
            F       K +  F  ++  K A +T    + +  + K+ +   +     S R      
Sbjct: 267 AFKNGAQYSKAIAYFEIMKSSKVAPDTCTMNIVIHCLVKIGLYGEAIELFNSMRERRTTC 326

Query: 283 LNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDR 342
              +     + +S+S     CG+ +N      +M+   + G++P+  +Y+  + A  S  
Sbjct: 327 HPDVVTYTSIMYSYS----VCGQAENCKAVFDIMV---AEGVRPNIVSYNALLGAYASHG 379

Query: 343 GLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFL 402
                +E  K+++QN L+P                         D +S       +++ L
Sbjct: 380 MHTEALETFKLLKQNGLRP-------------------------DIVS-------YTSLL 407

Query: 403 AACDTMDKPERAIKIFAKMRQKL-RPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI 461
            A     +PE+A ++F +MR+   +P+  +Y  L   +G+     E  ++  +       
Sbjct: 408 NAYGRSAQPEKAREVFNEMRKNACKPNKVSYNALIDAYGSAGMLKEAISLLHE------- 460

Query: 462 NAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKT---PLGTPTYNTVLHS 518
                 M ++ IQ   IS+  LL A G    + ++      +K+    L T  YN+ + S
Sbjct: 461 ------MEQDGIQPDVISISTLLTACGRCKQLTKIDIILAAAKSRGIQLNTVAYNSGIGS 514

Query: 519 LVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID-------------------------- 552
            +   +  +A+ ++  M+   + P+A TYNI+I                           
Sbjct: 515 YLSLGDYKKALVLYTSMRAGNVKPDAVTYNILISGSCKLGRYVESLKFFEDMLDLNIHLT 574

Query: 553 -------CCSIIRCFK--SASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLD 603
                   CS ++  K   A++  + M   G +P  +TYT LIK   D G +  A +L  
Sbjct: 575 KEVYSSVICSYVKQGKLTEAASTFNSMKETGCFPDVLTYTTLIKAYSDDGSWRRAWDLFK 634

Query: 604 LVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
            +   G   D ++ +++++   + G+ + +  +IE M Q K+Q
Sbjct: 635 EMENNGTQPDAIVCSSLMEALNKGGQPERVLQLIEFMKQKKIQ 677



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 82/380 (21%), Positives = 151/380 (39%), Gaps = 26/380 (6%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ +IHA  R      A  +M  MQ   + PS  TY+  I A  +    +  +E+ K M
Sbjct: 190 TYNSLIHAHARAGQWCWAINIMDDMQRAAIPPSRTTYNNVINACGAAGNWKKALELCKKM 249

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDK 410
            +N + P   T   +        +   A A   +I + +   P     +  +     +  
Sbjct: 250 TENGVGPDLITHNIVLSAFKNGAQYSKAIAYF-EIMKSSKVAPDTCTMNIVIHCLVKIGL 308

Query: 411 PERAIKIFAKMRQK---LRPDIRTY-ELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM 466
              AI++F  MR++     PD+ TY  +++S              +S    A+   A+  
Sbjct: 309 YGEAIELFNSMRERRTTCHPDVVTYTSIMYS--------------YSVCGQAENCKAVFD 354

Query: 467 DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQ 523
            M    ++ + +S   LL A  + GM  E ++ F   K     P   +Y ++L++   + 
Sbjct: 355 IMVAEGVRPNIVSYNALLGAYASHGMHTEALETFKLLKQNGLRPDIVSYTSLLNAYGRSA 414

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
           +  +A E+F +M+     PN  +YN +ID        K A +L+  M +DG  P  ++ +
Sbjct: 415 QPEKAREVFNEMRKNACKPNKVSYNALIDAYGSAGMLKEAISLLHEMEQDGIQPDVISIS 474

Query: 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
            L+          +   +L      GI  + + YN+ +      G       +   M   
Sbjct: 475 TLLTACGRCKQLTKIDIILAAAKSRGIQLNTVAYNSGIGSYLSLGDYKKALVLYTSMRAG 534

Query: 644 KVQPDPSTCHFVFSGYVNCG 663
            V+PD  T + + SG    G
Sbjct: 535 NVKPDAVTYNILISGSCKLG 554



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 81/354 (22%), Positives = 148/354 (41%), Gaps = 31/354 (8%)

Query: 334 FIRAIVSDRGLRNGMEVLKIMQ-QNNLKPQDSTIATLSVECSKALELDLAEALLDQIS-- 390
            IR I     L++ + V + M+ Q N   ++     +    ++  ++D A  L  ++   
Sbjct: 123 LIREIAISGSLKHAVHVFRWMKNQENYCARNDIYGMMIRLHARHNKVDQARGLFFEMQEW 182

Query: 391 RCT-NPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNV-NAPYEE 448
           RC  N   +++ + A     +   AI I   M++   P  RT       + NV NA    
Sbjct: 183 RCKPNTDTYNSLIHAHARAGQWCWAINIMDDMQRAAIPPSRT------TYNNVINACGAA 236

Query: 449 GNMFSQVDSAKRI--NAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYF---CDS 503
           GN    ++  K++  N +  D+  +NI         +L A        + I YF     S
Sbjct: 237 GNWKKALELCKKMTENGVGPDLITHNI---------VLSAFKNGAQYSKAIAYFEIMKSS 287

Query: 504 KTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMK----TCGIPPNAATYNIMIDCCSIIRC 559
           K    T T N V+H LV+      A+E+F  M+    TC   P+  TY  ++   S+   
Sbjct: 288 KVAPDTCTMNIVIHCLVKIGLYGEAIELFNSMRERRTTC--HPDVVTYTSIMYSYSVCGQ 345

Query: 560 FKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNT 619
            ++  A+  +MV +G  P  ++Y AL+     +G   EAL    L+   G+  D++ Y +
Sbjct: 346 AENCKAVFDIMVAEGVRPNIVSYNALLGAYASHGMHTEALETFKLLKQNGLRPDIVSYTS 405

Query: 620 ILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           +L       + +    +  +M +N  +P+  + + +   Y + G    A+  L 
Sbjct: 406 LLNAYGRSAQPEKAREVFNEMRKNACKPNKVSYNALIDAYGSAGMLKEAISLLH 459



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 79/172 (45%), Gaps = 2/172 (1%)

Query: 506 PLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASA 565
           P    TYN V+++   A    +A+E+ K+M   G+ P+  T+NI++        +  A A
Sbjct: 220 PPSRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLITHNIVLSAFKNGAQYSKAIA 279

Query: 566 LVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLD-LVSLEGIPH-DVLLYNTILKK 623
              +M      P T T   +I  L+  G + EA+ L + +       H DV+ Y +I+  
Sbjct: 280 YFEIMKSSKVAPDTCTMNIVIHCLVKIGLYGEAIELFNSMRERRTTCHPDVVTYTSIMYS 339

Query: 624 ACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
               G+ +  + + + M    V+P+  + + +   Y + G H  A+E  ++L
Sbjct: 340 YSVCGQAENCKAVFDIMVAEGVRPNIVSYNALLGAYASHGMHTEALETFKLL 391



 Score = 44.3 bits (103), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 26/111 (23%), Positives = 49/111 (44%)

Query: 577 PQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFI 636
           P T TY +LI      G +  A+N++D +    IP     YN ++      G       +
Sbjct: 186 PNTDTYNSLIHAHARAGQWCWAINIMDDMQRAAIPPSRTTYNNVINACGAAGNWKKALEL 245

Query: 637 IEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTL 687
            ++M +N V PD  T + V S + N   ++ A+   +++    +  +  T+
Sbjct: 246 CKKMTENGVGPDLITHNIVLSAFKNGAQYSKAIAYFEIMKSSKVAPDTCTM 296


>gi|222629056|gb|EEE61188.1| hypothetical protein OsJ_15186 [Oryza sativa Japonica Group]
          Length = 897

 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 112/232 (48%), Gaps = 16/232 (6%)

Query: 423 QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKN 482
           + L PD+ TY +L      +N   +EGN+       K+   I  +M+R  ++ + ++   
Sbjct: 650 KGLAPDVFTYNIL------INGHCKEGNV-------KKALEIFENMSRRGVRATVVTYTA 696

Query: 483 LLKALGAEGMIRELIQYFCDSKTPLGTPT---YNTVLHSLVEAQESHRAMEIFKQMKTCG 539
           L+ AL  +G ++E  + F ++      P    YN +++S   +    RA EI  +M+   
Sbjct: 697 LIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKR 756

Query: 540 IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEAL 599
           I P+  TYN ++    ++     A  L+  M   G  P  +TY  LI      GD  +AL
Sbjct: 757 IAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDAL 816

Query: 600 NLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
            + + +  +G    +L YN +++  C+ G+ D  E ++++M +N + PD ST
Sbjct: 817 RIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDST 868



 Score = 82.4 bits (202), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 77/362 (21%), Positives = 152/362 (41%), Gaps = 30/362 (8%)

Query: 309 SGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIAT 368
           S  A  L   M  L L   + T++  +R + S       +E+L+ M + N    ++ IA 
Sbjct: 464 SAPAFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALELLRQMPRPNAVTYNTVIAG 523

Query: 369 LSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKM--RQKLR 426
                     LD+   + ++     N   +   ++    + + + A+K+F +M  + +++
Sbjct: 524 FCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVK 583

Query: 427 PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI--NAIEMDMARNNIQHSHISMKN-- 482
           P+   Y  L   +       ++G + + +    R+    + M +A  N+    + M    
Sbjct: 584 PEAVMYNALIGGY------CDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRG 637

Query: 483 -----LLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKT 537
                L++ +G +G+  ++              TYN +++   +     +A+EIF+ M  
Sbjct: 638 TEAYELVEEMGGKGLAPDVF-------------TYNILINGHCKEGNVKKALEIFENMSR 684

Query: 538 CGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDE 597
            G+     TY  +I   S     +    L    VR G  P  + Y ALI      G+ D 
Sbjct: 685 RGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDR 744

Query: 598 ALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFS 657
           A  ++  +  + I  D + YNT+++  C  GR+D    +I++M +  +QPD  T + + S
Sbjct: 745 AFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLIS 804

Query: 658 GY 659
           GY
Sbjct: 805 GY 806



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 95/213 (44%), Gaps = 13/213 (6%)

Query: 412 ERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA- 469
           ++A++IF  M R+ +R  + TY  L           E   +F   D A R   I  D+  
Sbjct: 673 KKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLF---DEAVR-RGIRPDLVL 728

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAM 529
            N + +SH +  N+ +A        E++      +      TYNT++  L        A 
Sbjct: 729 YNALINSHSTSGNIDRAF-------EIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEAR 781

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
           ++  +M   GI P+  TYN +I   S+    K A  + + M+  GF P  +TY ALI+ L
Sbjct: 782 KLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGL 841

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILK 622
              G  D+A N++  +   GI  D   Y ++++
Sbjct: 842 CKNGQGDDAENMVKEMVENGITPDDSTYISLIE 874



 Score = 56.2 bits (134), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 56/265 (21%), Positives = 115/265 (43%), Gaps = 20/265 (7%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ ++HA         A +L+ +M   GL P   TY+  I     +  ++  +E+ + M
Sbjct: 623 TYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENM 682

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPK--PFSAFLAACDTMDKP 411
            +  ++    T   L    SK  ++   + L D+ + R   P    ++A + +  T    
Sbjct: 683 SRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNI 742

Query: 412 ERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           +RA +I  +M +K + PD  TY  L               +  +VD A+++  I+ +M  
Sbjct: 743 DRAFEIMGEMEKKRIAPDDVTYNTLMRGL----------CLLGRVDEARKL--ID-EMTE 789

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHR 527
             IQ   ++   L+     +G +++ ++   +       P   TYN ++  L +  +   
Sbjct: 790 RGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDD 849

Query: 528 AMEIFKQMKTCGIPPNAATYNIMID 552
           A  + K+M   GI P+ +TY  +I+
Sbjct: 850 AENMVKEMVENGITPDDSTYISLIE 874



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 76/166 (45%), Gaps = 8/166 (4%)

Query: 507 LGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI-DCCSIIRCFKSASA 565
           L  P     LH L+ A  S  A  +F  M    +P    T+NIM+   CS     K A A
Sbjct: 446 LSLPISTASLHPLLSALPSAPAFALFADMFRLRLPLCTTTFNIMLRHLCS---AGKPARA 502

Query: 566 LVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL-DLVSLEGIPHDVLLYNTILKKA 624
           L   ++R    P  +TY  +I      G    AL+++ ++    GI  +   Y T++   
Sbjct: 503 L--ELLRQMPRPNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGW 560

Query: 625 CEKGRID-VIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAM 669
           C+ GR+D  ++   E + + +V+P+    + +  GY + G  ++A+
Sbjct: 561 CKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTAL 606


>gi|326527525|dbj|BAK08037.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 460

 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 77/371 (20%), Positives = 142/371 (38%), Gaps = 49/371 (13%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           AE +++    LG+ P   TY+  + A     GL  G  VL  M++  + P          
Sbjct: 29  AESVLVDAIRLGMPPDVVTYNTLLAAHCRASGLDAGFAVLHRMREAGVSP---------- 78

Query: 372 ECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIR 430
                          D I+       +++ +A         RA+ +F +M Q  + PD  
Sbjct: 79  ---------------DAIT-------YNSLIAGAARRGLTMRALDLFDEMLQAGVAPDAW 116

Query: 431 TYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL--- 487
           +Y  L         P +   +F+             DMA   +     +   LL  L   
Sbjct: 117 SYNALMHCLFRSGHPEDAYRVFA-------------DMAEKGVAPCATTYNTLLDGLFRF 163

Query: 488 GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATY 547
           G       + +Y   +  P+G  TYNT+++ L ++ +   A  + +++      PN  TY
Sbjct: 164 GHATNAYRMFRYLQRTGLPVGIVTYNTMINGLCKSGKVGYARMVLRELGRTEHAPNVVTY 223

Query: 548 NIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSL 607
             ++ CC     F         ++  G+ P    Y  +I  L+  G  +EA    +L+  
Sbjct: 224 TTVMKCCFKYGRFDQGLETFLSLLEGGYIPDLFPYCTVISALVKKGRMEEANTYSELMIR 283

Query: 608 EGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNS 667
            G   D   YNT++   C++G++D    ++  M +  ++ D  T   + +G    G   +
Sbjct: 284 SGFRLDSACYNTLIYLRCKEGKLDDAFELLSMMEEGGLESDEYTFSILVNGLCKMGHFEA 343

Query: 668 AMEALQVLSMR 678
           A + L  + +R
Sbjct: 344 AHKQLCYMEIR 354



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 66/173 (38%)

Query: 503 SKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKS 562
           ++T L T   N  L +L       RA  +       G+PP+  TYN ++          +
Sbjct: 4   ARTQLSTRLMNVCLAALCRGGGIARAESVLVDAIRLGMPPDVVTYNTLLAAHCRASGLDA 63

Query: 563 ASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILK 622
             A++  M   G  P  +TY +LI      G    AL+L D +   G+  D   YN ++ 
Sbjct: 64  GFAVLHRMREAGVSPDAITYNSLIAGAARRGLTMRALDLFDEMLQAGVAPDAWSYNALMH 123

Query: 623 KACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
                G  +    +   M +  V P  +T + +  G    G   +A    + L
Sbjct: 124 CLFRSGHPEDAYRVFADMAEKGVAPCATTYNTLLDGLFRFGHATNAYRMFRYL 176



 Score = 49.7 bits (117), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 72/392 (18%), Positives = 146/392 (37%), Gaps = 55/392 (14%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           WS++ ++H   R+ +   A ++   M   G+ P + TY+  +  +       N   + + 
Sbjct: 116 WSYNALMHCLFRSGHPEDAYRVFADMAEKGVAPCATTYNTLLDGLFRFGHATNAYRMFRY 175

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDK 410
           +Q+  L     T  T+     K+ ++  A  +L ++ R     N   ++  +  C    +
Sbjct: 176 LQRTGLPVGIVTYNTMINGLCKSGKVGYARMVLRELGRTEHAPNVVTYTTVMKCCFKYGR 235

Query: 411 PERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
            ++ ++ F  + +    PD+  Y  + S         EE N +S++              
Sbjct: 236 FDQGLETFLSLLEGGYIPDLFPYCTVISALVK-KGRMEEANTYSEL-------------- 280

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAM 529
                                 MIR        S   L +  YNT+++   +  +   A 
Sbjct: 281 ----------------------MIR--------SGFRLDSACYNTLIYLRCKEGKLDDAF 310

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSA-SALVSMMVRDGFYPQTMTYTALIKI 588
           E+   M+  G+  +  T++I+++    +  F++A   L  M +RD      + Y  L+  
Sbjct: 311 ELLSMMEEGGLESDEYTFSILVNGLCKMGHFEAAHKQLCYMEIRD-MESNVIAYNCLVDA 369

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
           L    + D A+ LL  + L+    D   Y +++   C+ GR  +    +    +      
Sbjct: 370 LCKSDEVDAAIKLLHNMKLK----DDFTYTSLVHGLCKVGRYHMASKFLRICLREGNSIL 425

Query: 649 PSTCHFVFSGYVNCGFHNSAMEALQVLSMRML 680
            S    V +G  + GF N   +    L M  L
Sbjct: 426 ASAKRAVIAGLRSAGFQNDVRKVRAALRMARL 457


>gi|413948659|gb|AFW81308.1| hypothetical protein ZEAMMB73_549819 [Zea mays]
          Length = 795

 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 93/423 (21%), Positives = 177/423 (41%), Gaps = 36/423 (8%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLG---LQPSSHTYDGFIRAIVSDRGLRNGMEV 350
           +S++ +I      + S  A +L++ M + G     P+  +Y+  I     +  +     +
Sbjct: 163 FSYNALIKGLCVEKKSQEALELLIHMTADGGYNCSPNVVSYNTVIDGFFKEGEVDKAYFL 222

Query: 351 LKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI---SRCTNPKPFSAFLAACDT 407
              M    L P   T  +L     KA  +D A A+L  +       + + ++  +    +
Sbjct: 223 FHEMMGQGLPPDVVTYNSLIDGLCKAQAMDKAVAILQHMFDKGVMPDTRTYNIMIRGYCS 282

Query: 408 MDKPERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMF-SQVDSAKRINA-- 463
           + + E A+++  KM    L+PD+ TY LL   +  +    E  ++F S V   ++ N+  
Sbjct: 283 LGQLEEAVRLLKKMSGSGLQPDVVTYSLLIQYYCKIGRCAEARSVFDSMVRKGQKPNSTI 342

Query: 464 --------------IEMD-----MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSK 504
                         I++      M R+ I   H +   L+ A    G + + +  F + +
Sbjct: 343 YHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMR 402

Query: 505 TPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFK 561
                P   +Y+TV+H L +      A+  F QM + G+ PN  ++  +I     I  +K
Sbjct: 403 QNGLRPDVVSYSTVIHILCKTGRVEDAVYHFNQMVSEGLSPNIISFTSLIHGLCSIGEWK 462

Query: 562 SASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTIL 621
               L   M+  G +P  +    ++  L   G   EA +  D+V   G+  DV+ YNT++
Sbjct: 463 KVEELAFEMINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPDVVSYNTLI 522

Query: 622 KKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLC 681
              C  G++D     +++M    ++PD  T + + +GY    F N  +E    L   M  
Sbjct: 523 DGYCFVGKMDESIKQLDRMVSIGLRPDSWTYNSLLNGY----FKNGRVEDALALYREMFR 578

Query: 682 EEV 684
           ++V
Sbjct: 579 KDV 581



 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 120/532 (22%), Positives = 207/532 (38%), Gaps = 65/532 (12%)

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
           M +K +  + + Y +M++  C  G LEEA  L+  +    G+ P +  Y+  +    K+ 
Sbjct: 261 MFDKGVMPDTRTYNIMIRGYCSLGQLEEAVRLLKKMSGS-GLQPDVVTYSLLIQYYCKIG 319

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK------HYSLS 226
               A    D M  +    N   Y  LL     +  L  V ++ +  I+      H + +
Sbjct: 320 RCAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFN 379

Query: 227 IFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNAL 286
           I      + ++ +   +  A      M                 R    R D+       
Sbjct: 380 IL-----ICAYAKHGAVDKAMTAFTEM-----------------RQNGLRPDV------- 410

Query: 287 PVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRN 346
                   S+S VIH   +T     A     QM S GL P+  ++   I  + S    + 
Sbjct: 411 -------VSYSTVIHILCKTGRVEDAVYHFNQMVSEGLSPNIISFTSLIHGLCSIGEWKK 463

Query: 347 GMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFL 402
             E+   M    + P    + T+     K   +  A+   D +      KP    ++  +
Sbjct: 464 VEELAFEMINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVIH-IGVKPDVVSYNTLI 522

Query: 403 AACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI 461
                + K + +IK   +M    LRPD  TY  L      +N  ++ G    +V+ A   
Sbjct: 523 DGYCFVGKMDESIKQLDRMVSIGLRPDSWTYNSL------LNGYFKNG----RVEDAL-- 570

Query: 462 NAIEMDMARNNIQHSHISMKNLLKALGAEGMI---RELIQYFCDSKTPLGTPTYNTVLHS 518
            A+  +M R +++   I+   +L  L   G I   REL     D  T L   TYNTVL  
Sbjct: 571 -ALYREMFRKDVKFCAITSNIMLHGLFQAGRIVAARELYMKMVDRGTQLRIETYNTVLGG 629

Query: 519 LVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQ 578
           L E      A+ +F+ +++     +  T++I+I+    +     A +L S MV  G  P 
Sbjct: 630 LCENSCVDEALRMFEDLRSKEFELDVRTFSIVINALLKVGRIDEAKSLFSAMVLRGPVPD 689

Query: 579 TMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
            +TY+ +IK  ++ G  +E+ NL   +   G   D  + N I+++  EKG +
Sbjct: 690 VITYSLMIKSHIEEGLLEESDNLFLSMEKNGCAADSHMLNIIVRRLLEKGDV 741



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 86/180 (47%), Gaps = 4/180 (2%)

Query: 511 TYNTVLHSLVEAQESHRAME-IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSM 569
           T N ++  L +   +  AM+ +F++M   G  P+  +YN +I    + +  + A  L+  
Sbjct: 128 TLNQLIKGLCDGNRTDDAMDMVFRRMPELGYTPDVFSYNALIKGLCVEKKSQEALELLIH 187

Query: 570 MVRDGFY---PQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE 626
           M  DG Y   P  ++Y  +I      G+ D+A  L   +  +G+P DV+ YN+++   C+
Sbjct: 188 MTADGGYNCSPNVVSYNTVIDGFFKEGEVDKAYFLFHEMMGQGLPPDVVTYNSLIDGLCK 247

Query: 627 KGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
              +D    I++ M    V PD  T + +  GY + G    A+  L+ +S   L  +V T
Sbjct: 248 AQAMDKAVAILQHMFDKGVMPDTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVT 307



 Score = 43.9 bits (102), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 70/169 (41%), Gaps = 11/169 (6%)

Query: 506 PLGTPTYNTVLHSLVEAQESHR-------AMEIFKQMKTCGIPPNAATYNIMIDCCSIIR 558
           P     +N+VL  +  A  S         A+ +F  M   G+   AA   I+I C   + 
Sbjct: 46  PASVHAFNSVLTVVARADSSSSPRHSAALAVSLFNTMVRSGVNMMAAIIGILIRCFCTVG 105

Query: 559 CFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLE-GIPHDVLLY 617
               A A  ++ ++ G+  Q +T   LIK L D    D+A++++     E G   DV  Y
Sbjct: 106 RLDLAFAAFALFLKTGWRVQNVTLNQLIKGLCDGNRTDDAMDMVFRRMPELGYTPDVFSY 165

Query: 618 NTILKKAC-EKGRIDVIEFIIEQMHQNKVQPDPSTCHF--VFSGYVNCG 663
           N ++K  C EK   + +E +I           P+   +  V  G+   G
Sbjct: 166 NALIKGLCVEKKSQEALELLIHMTADGGYNCSPNVVSYNTVIDGFFKEG 214


>gi|159465707|ref|XP_001691064.1| predicted mitochondrial protein [Chlamydomonas reinhardtii]
 gi|158279750|gb|EDP05510.1| predicted mitochondrial protein [Chlamydomonas reinhardtii]
          Length = 630

 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 86/375 (22%), Positives = 154/375 (41%), Gaps = 35/375 (9%)

Query: 329 HTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ 388
           ++Y   I   +  + +   ME++  M+Q N++    T   L   C K  +L LA  + + 
Sbjct: 69  YSYTATISLCIYSQDVDRAMELMNEMRQRNIERNVHTFTALMNVCIKCGKLPLALEIYNN 128

Query: 389 ISRCTNPKP----FSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVN 443
           + R  N  P    ++  +     + + ERAI +   M+Q+ + P +RTY  L       N
Sbjct: 129 M-RAANCMPNVVTYNTLVDVYGKLGRWERAIHVLDLMKQEGVEPVLRTYNTLIIACNMCN 187

Query: 444 APYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAE---GMIRELIQYF 500
            P E   ++ ++ S             +    +  +   L+ A G     G   E+ Q  
Sbjct: 188 QPREALAVYQRLLS-------------DGYTPNSTTYNALISAYGKTMQLGKALEVYQEM 234

Query: 501 CDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCF 560
                     TY++++ +  +A +   A+ IF +M+     PN  TYN ++  C+    +
Sbjct: 235 LRQNMERSVITYSSLISACEKAGQWETALRIFNEMQQDNCVPNTVTYNSLVTACAQGGQW 294

Query: 561 KSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTI 620
           + A+ +   M   G  P  +TYTALI      G + +AL     + ++G   D ++YN I
Sbjct: 295 EKATEVFEQMTAHGCTPDVVTYTALISAYERGGQWQKALQAFGKMCMQGCKPDAIVYNAI 354

Query: 621 LKKACEKGRI----DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
           +    E G I      ++  +  + Q   + +P       +G V    H  AM A     
Sbjct: 355 IDTLWETGIIWAQGRALQLFLTAVQQGHFRQEPVVRR---AGRVEVNLH--AMTA----G 405

Query: 677 MRMLCEEVSTLEEKR 691
           + M+C     LE KR
Sbjct: 406 VAMVCLYCWLLEIKR 420



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 70/300 (23%), Positives = 127/300 (42%), Gaps = 27/300 (9%)

Query: 408 MDKPERAIKIF-----AKMRQKLRP--DIRTYELLFSLFGNVNAPYEEGNMFSQ-VDSAK 459
           + K  RA+++F     A  R  LR   D+ +Y    SL            ++SQ VD A 
Sbjct: 40  LGKDRRAMELFDWLRSANERSPLRQLCDVYSYTATISLC-----------IYSQDVDRAM 88

Query: 460 RINAIEMDMARNNIQ---HSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVL 516
            +     +M + NI+   H+  ++ N+    G   +  E+      +       TYNT++
Sbjct: 89  ELMN---EMRQRNIERNVHTFTALMNVCIKCGKLPLALEIYNNMRAANCMPNVVTYNTLV 145

Query: 517 HSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFY 576
               +     RA+ +   MK  G+ P   TYN +I  C++    + A A+   ++ DG+ 
Sbjct: 146 DVYGKLGRWERAIHVLDLMKQEGVEPVLRTYNTLIIACNMCNQPREALAVYQRLLSDGYT 205

Query: 577 PQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEK-GRIDVIEF 635
           P + TY ALI          +AL +   +  + +   V+ Y++++  ACEK G+ +    
Sbjct: 206 PNSTTYNALISAYGKTMQLGKALEVYQEMLRQNMERSVITYSSLI-SACEKAGQWETALR 264

Query: 636 IIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDFE 695
           I  +M Q+   P+  T + + +     G    A E  + ++      +V T     S +E
Sbjct: 265 IFNEMQQDNCVPNTVTYNSLVTACAQGGQWEKATEVFEQMTAHGCTPDVVTYTALISAYE 324



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 79/171 (46%), Gaps = 12/171 (7%)

Query: 288 VMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNG 347
           V  VLR +++ +I AC        A  +  ++ S G  P+S TY+  I A      L   
Sbjct: 169 VEPVLR-TYNTLIIACNMCNQPREALAVYQRLLSDGYTPNSTTYNALISAYGKTMQLGKA 227

Query: 348 MEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR--CT-NPKPFSAFLAA 404
           +EV + M + N++    T ++L   C KA + + A  + +++ +  C  N   +++ + A
Sbjct: 228 LEVYQEMLRQNMERSVITYSSLISACEKAGQWETALRIFNEMQQDNCVPNTVTYNSLVTA 287

Query: 405 CDTMDKPERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQ 454
           C    + E+A ++F +M      PD+ TY  L S        YE G  + +
Sbjct: 288 CAQGGQWEKATEVFEQMTAHGCTPDVVTYTALIS-------AYERGGQWQK 331



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 37/164 (22%), Positives = 78/164 (47%), Gaps = 10/164 (6%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ +I A G+T   G A ++  +M    ++ S  TY   I A          + +   M
Sbjct: 210 TYNALISAYGKTMQLGKALEVYQEMLRQNMERSVITYSSLISACEKAGQWETALRIFNEM 269

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR--CT-NPKPFSAFLAACDTMDKP 411
           QQ+N  P   T  +L   C++  + + A  + +Q++   CT +   ++A ++A +   + 
Sbjct: 270 QQDNCVPNTVTYNSLVTACAQGGQWEKATEVFEQMTAHGCTPDVVTYTALISAYERGGQW 329

Query: 412 ERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQ 454
           ++A++ F KM  Q  +PD   Y  +      ++  +E G +++Q
Sbjct: 330 QKALQAFGKMCMQGCKPDAIVYNAI------IDTLWETGIIWAQ 367


>gi|15983487|gb|AAL11611.1|AF424618_1 AT5g04810/MUK11_13 [Arabidopsis thaliana]
          Length = 950

 Score = 85.9 bits (211), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 88/463 (19%), Positives = 176/463 (38%), Gaps = 64/463 (13%)

Query: 288 VMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNG 347
           + K  R  F  ++   GR  +   A +   +M++ G+ P+S  Y   I A    R +   
Sbjct: 302 ISKPSRTEFGLMVKFYGRRGDMHRARETFERMRARGITPTSRIYTSLIHAYAVGRDMDEA 361

Query: 348 MEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ---ISRCTNPKPFSAFL-A 403
           +  ++ M++  ++    T + +    SKA   + A+   D+   I +  N   +   + A
Sbjct: 362 LSCVRKMKEEGIEMSLVTYSVIVGGFSKAGHAEAADYWFDEAKRIHKTLNASIYGKIIYA 421

Query: 404 ACDT-----------------MDKP-----------------ERAIKIFAKMRQ-KLRPD 428
            C T                 +D P                 ++ + +F ++++    P 
Sbjct: 422 HCQTCNMERAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEKKGLVVFKRLKECGFTPT 481

Query: 429 IRTYELLFSLFGNVN----------APYEEG------------NMFSQVDSAKRINAIEM 466
           + TY  L +L+  V              EEG            N F ++       A+  
Sbjct: 482 VVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFE 541

Query: 467 DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNT---VLHSLVEAQ 523
           DM +  ++   I   N++ A    G +   IQ   + +     PT  T   ++H   ++ 
Sbjct: 542 DMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSG 601

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
           +  R++E+F  M+ CG  P   T+N +I+     R  + A  ++  M   G      TYT
Sbjct: 602 DMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSANEHTYT 661

Query: 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
            +++     GD  +A      +  EG+  D+  Y  +LK  C+ GR+     + ++M   
Sbjct: 662 KIMQGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACCKSGRMQSALAVTKEMSAR 721

Query: 644 KVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
            +  +    + +  G+   G    A + +Q +    +  ++ T
Sbjct: 722 NIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHT 764



 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 91/399 (22%), Positives = 164/399 (41%), Gaps = 40/399 (10%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTY----DGFIRAIVSDRGLRNGMEVL 351
           +  +I+A  +T N   AE L+ +M+  G+      Y    DG+   +V+D   + G+ V 
Sbjct: 415 YGKIIYAHCQTCNMERAEALVREMEEEGIDAPIAIYHTMMDGY--TMVADE--KKGLVVF 470

Query: 352 KIMQQNNLKPQDSTIA------TLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAAC 405
           K +++    P   T        T   + SKALE+     ++ +     N K +S  +   
Sbjct: 471 KRLKECGFTPTVVTYGCLINLYTKVGKISKALEVS---RVMKEEGVKHNLKTYSMMINGF 527

Query: 406 DTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAI 464
             +     A  +F  M ++ ++PD+  Y  + S F  +      GNM   + + K +  +
Sbjct: 528 VKLKDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGM------GNMDRAIQTVKEMQKL 581

Query: 465 EMDMARNN---IQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVE 521
                      I H +    ++ ++L    M+R      C     +   T+N +++ LVE
Sbjct: 582 RHRPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRR-----CGCVPTV--HTFNGLINGLVE 634

Query: 522 AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMT 581
            ++  +A+EI  +M   G+  N  TY  ++   + +     A    + +  +G      T
Sbjct: 635 KRQMEKAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIFT 694

Query: 582 YTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMH 641
           Y AL+K     G    AL +   +S   IP +  +YN ++     +G +     +I+QM 
Sbjct: 695 YEALLKACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMK 754

Query: 642 QNKVQPDPSTCHFVFSGYVNCGFHNSA------MEALQV 674
           +  V+PD  T     S     G  N A      MEAL V
Sbjct: 755 KEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGV 793



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 103/232 (44%), Gaps = 10/232 (4%)

Query: 456 DSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTV 515
           D AKRI+          I ++H    N+ +A   E ++RE+ +   D+   +    Y+T+
Sbjct: 401 DEAKRIHKTLNASIYGKIIYAHCQTCNMERA---EALVREMEEEGIDAPIAI----YHTM 453

Query: 516 LHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGF 575
           +       +  + + +FK++K CG  P   TY  +I+  + +     A  +  +M  +G 
Sbjct: 454 MDGYTMVADEKKGLVVFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGV 513

Query: 576 YPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEF 635
                TY+ +I   +   D+  A  + + +  EG+  DV+LYN I+   C  G +D    
Sbjct: 514 KHNLKTYSMMINGFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQ 573

Query: 636 IIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTL 687
            +++M + + +P   T   +  GY   G       +L+V  M   C  V T+
Sbjct: 574 TVKEMQKLRHRPTTRTFMPIIHGYAKSG---DMRRSLEVFDMMRRCGCVPTV 622



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 101/493 (20%), Positives = 188/493 (38%), Gaps = 65/493 (13%)

Query: 120 LNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANL 179
           LN   Y  ++ A C+   +E A  L+  + E  GI   + +Y++ +     +       +
Sbjct: 410 LNASIYGKIIYAHCQTCNMERAEALVREM-EEEGIDAPIAIYHTMMDGYTMVADEKKGLV 468

Query: 180 CLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEI----WEDYIKHYSLSIFSLRKFVW 235
               +         VTY  L+ L      +S   E+     E+ +KH +L  +S+   + 
Sbjct: 469 VFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKH-NLKTYSM--MIN 525

Query: 236 SFTRLRDLKSAYETLQHMVALAMMGKLYI-NRTSEGRLRSSRLDIPIPLNALPVMKVLRW 294
            F +L+D  +A+   + MV   M   + + N           +D  I    +  M+ LR 
Sbjct: 526 GFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAI--QTVKEMQKLRH 583

Query: 295 -----SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGME 349
                +F  +IH   ++ +   + ++   M+  G  P+ HT++G I  +V  R +   +E
Sbjct: 584 RPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVE 643

Query: 350 VLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMD 409
           +L  M          T+A +S                       N   ++  +    ++ 
Sbjct: 644 ILDEM----------TLAGVSA----------------------NEHTYTKIMQGYASVG 671

Query: 410 KPERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
              +A + F +++ + L  DI TYE L      + A  + G M S +       A+  +M
Sbjct: 672 DTGKAFEYFTRLQNEGLDVDIFTYEAL------LKACCKSGRMQSAL-------AVTKEM 718

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQES 525
           +  NI  +      L+      G + E   LIQ            TY + + +  +A + 
Sbjct: 719 SARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDM 778

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
           +RA +  ++M+  G+ PN  TY  +I   +     + A +    M   G  P    Y  L
Sbjct: 779 NRATQTIEEMEALGVKPNIKTYTTLIKGWARASLPEKALSCYEEMKAMGIKPDKAVYHCL 838

Query: 586 IKILLDYGDFDEA 598
           +  LL      EA
Sbjct: 839 LTSLLSRASIAEA 851



 Score = 48.1 bits (113), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 81/179 (45%), Gaps = 10/179 (5%)

Query: 26  ERRNVANKLELSRTLT-TTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHS 84
           E+R +   +E+   +T   +  NE + +K  Q         G+  +A      L   +  
Sbjct: 634 EKRQMEKAVEILDEMTLAGVSANEHTYTKIMQ----GYASVGDTGKAFEYFTRL--QNEG 687

Query: 85  LGADDFFH--ILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEAS 142
           L  D F +  +L  C +S      +   + M  + I  N+  Y +++    + G + EA+
Sbjct: 688 LDVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAA 747

Query: 143 NLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLK 201
           +LI  + ++ G+ P +  Y SF+ AC+K   M  A   ++ M++  V  N  TYT L+K
Sbjct: 748 DLIQQM-KKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIK 805



 Score = 45.4 bits (106), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 61/356 (17%), Positives = 142/356 (39%), Gaps = 40/356 (11%)

Query: 106 VMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGE--RYGIYPILPVYNS 163
            +E  R+M+E+ +  N K Y +M+    K   L++ +N      +  + G+ P + +YN+
Sbjct: 501 ALEVSRVMKEEGVKHNLKTYSMMINGFVK---LKDWANAFAVFEDMVKEGMKPDVILYNN 557

Query: 164 FLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHY 223
            + A   + +M  A   +  M          T+  ++       ++    E++ D ++  
Sbjct: 558 IISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSGDMRRSLEVF-DMMRRC 616

Query: 224 SL--SIFSLRKFVWSFTRLRDLKSAYETL-----------QHMVALAMMGKLYINRTSEG 270
               ++ +    +      R ++ A E L           +H     M G   +  T + 
Sbjct: 617 GCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKA 676

Query: 271 -----RLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQ 325
                RL++  LD+ I            +++  ++ AC ++     A  +  +M +  + 
Sbjct: 677 FEYFTRLQNEGLDVDI------------FTYEALLKACCKSGRMQSALAVTKEMSARNIP 724

Query: 326 PSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEAL 385
            +S  Y+  I        +    ++++ M++  +KP   T  +    CSKA +++ A   
Sbjct: 725 RNSFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQT 784

Query: 386 LDQISRC---TNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFS 437
           ++++       N K ++  +        PE+A+  + +M+   ++PD   Y  L +
Sbjct: 785 IEEMEALGVKPNIKTYTTLIKGWARASLPEKALSCYEEMKAMGIKPDKAVYHCLLT 840


>gi|242089061|ref|XP_002440363.1| hypothetical protein SORBIDRAFT_09g030360 [Sorghum bicolor]
 gi|241945648|gb|EES18793.1| hypothetical protein SORBIDRAFT_09g030360 [Sorghum bicolor]
          Length = 715

 Score = 85.9 bits (211), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 77/340 (22%), Positives = 134/340 (39%), Gaps = 37/340 (10%)

Query: 326 PSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEAL 385
           P+  +Y+  I  +  +  +     +   M      P   T  ++     KA  +D AEA+
Sbjct: 137 PNVLSYNMVINGLFKEGEVDKAYTLFHEMLGQGFPPNIVTYNSVIDGLCKAQAMDKAEAV 196

Query: 386 LDQISRCTNPKPFSAFLAACDTMDKP--ERAIKIFAKMRQK-LRPDIRTYELLFSLFGNV 442
           L Q+                   DK   E A+++  KM    L+PD+ TY LL   +  +
Sbjct: 197 LQQM------------------FDKGQLEEAVRLLKKMSGGGLQPDVVTYSLLIDYYCKI 238

Query: 443 NAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMI---RELIQY 499
               E  N+F               M R        + + LL     +G +    +L+  
Sbjct: 239 GRCTEARNIFDS-------------MVRRGQNPDAYTYRTLLHGYATKGALVDMHDLLAL 285

Query: 500 FCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRC 559
                 PL    +N ++ +  + +   +AM  F +M+  G  PN  TY  +ID       
Sbjct: 286 MIQDGIPLEDHVFNILIRAYAKNETLDKAMTAFIEMRQKGFSPNVVTYTTVIDILCKAGR 345

Query: 560 FKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNT 619
            + A +  S MV +G  P  +T+T+LI  L   G++ +   L   +   GI  + +  NT
Sbjct: 346 VEDAVSHFSQMVSEGLSPDIITFTSLIHGLCTIGEWKKVEKLSFEMINRGIHPNAIFLNT 405

Query: 620 ILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
           I+   C++GR+       +Q+    V+PD  +   +  GY
Sbjct: 406 IMDSLCKEGRVLEAHDFFDQIIHVGVKPDVVSYTILIDGY 445



 Score = 69.7 bits (169), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 84/383 (21%), Positives = 145/383 (37%), Gaps = 20/383 (5%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL-S 370
           A +L+ +M   GLQP   TY   I              +   M +    P   T  TL  
Sbjct: 209 AVRLLKKMSGGGLQPDVVTYSLLIDYYCKIGRCTEARNIFDSMVRRGQNPDAYTYRTLLH 268

Query: 371 VECSKALELDLAE--ALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRP 427
              +K   +D+ +  AL+ Q         F+  + A    +  ++A+  F +MRQK   P
Sbjct: 269 GYATKGALVDMHDLLALMIQDGIPLEDHVFNILIRAYAKNETLDKAMTAFIEMRQKGFSP 328

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL 487
           ++ TY  +  +        +  + FSQ             M    +    I+  +L+  L
Sbjct: 329 NVVTYTTVIDILCKAGRVEDAVSHFSQ-------------MVSEGLSPDIITFTSLIHGL 375

Query: 488 ---GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNA 544
              G    + +L     +          NT++ SL +      A + F Q+   G+ P+ 
Sbjct: 376 CTIGEWKKVEKLSFEMINRGIHPNAIFLNTIMDSLCKEGRVLEAHDFFDQIIHVGVKPDV 435

Query: 545 ATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDL 604
            +Y I+ID   +      +  L+  MV  G  P  +TY+AL+      G  D+AL L   
Sbjct: 436 VSYTILIDGYCLDGKMDESIKLLGRMVSIGLRPDNVTYSALLNGYCKNGRVDDALALYRE 495

Query: 605 VSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGF 664
           +  + +  + + YN IL      GR+        ++  + +Q   +T + V  G     F
Sbjct: 496 MFSKDVKPNAITYNIILHGLFHAGRVVAAREFYMKIVDSGIQLGINTYNIVLGGLCENSF 555

Query: 665 HNSAMEALQVLSMRMLCEEVSTL 687
            + A+   Q L  +    EV T 
Sbjct: 556 VDEALRMFQGLRSKEFQLEVRTF 578



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 66/158 (41%), Gaps = 19/158 (12%)

Query: 506 PLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASA 565
           P    +YN V++ L +  E  +A  +F +M   G PPN  TYN +ID     +    A A
Sbjct: 136 PPNVLSYNMVINGLFKEGEVDKAYTLFHEMLGQGFPPNIVTYNSVIDGLCKAQAMDKAEA 195

Query: 566 LVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKAC 625
           ++  M                    D G  +EA+ LL  +S  G+  DV+ Y+ ++   C
Sbjct: 196 VLQQM-------------------FDKGQLEEAVRLLKKMSGGGLQPDVVTYSLLIDYYC 236

Query: 626 EKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
           + GR      I + M +    PD  T   +  GY   G
Sbjct: 237 KIGRCTEARNIFDSMVRRGQNPDAYTYRTLLHGYATKG 274



 Score = 50.4 bits (119), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 71/365 (19%), Positives = 141/365 (38%), Gaps = 24/365 (6%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           F+ +I A  + +    A    ++M+  G  P+  TY   I  +     + + +     M 
Sbjct: 298 FNILIRAYAKNETLDKAMTAFIEMRQKGFSPNVVTYTTVIDILCKAGRVEDAVSHFSQMV 357

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEAL-LDQISRCTNPKPFSAFLAAC-DTMDKPER 413
              L P   T  +L        E    E L  + I+R  +P   + FL    D++ K  R
Sbjct: 358 SEGLSPDIITFTSLIHGLCTIGEWKKVEKLSFEMINRGIHPN--AIFLNTIMDSLCKEGR 415

Query: 414 AIKIFAKMRQ----KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
            ++      Q     ++PD+ +Y +L      ++    +G M   +    R+ +I     
Sbjct: 416 VLEAHDFFDQIIHVGVKPDVVSYTIL------IDGYCLDGKMDESIKLLGRMVSI----- 464

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESH 526
              ++  +++   LL      G + + +  + +  +    P   TYN +LH L  A    
Sbjct: 465 --GLRPDNVTYSALLNGYCKNGRVDDALALYREMFSKDVKPNAITYNIILHGLFHAGRVV 522

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
            A E + ++   GI     TYNI++           A  +   +    F  +  T+  +I
Sbjct: 523 AAREFYMKIVDSGIQLGINTYNIVLGGLCENSFVDEALRMFQGLRSKEFQLEVRTFNIMI 582

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
             LL  G   +A +L   +   G+  D ++Y  +++   E+G ++  + +   M +N   
Sbjct: 583 VGLLKVGRIGDAKSLFSAILPSGLVPDAIIYGLMIQSHIEEGLLEESDELFLSMEKNGCT 642

Query: 647 PDPST 651
            +  T
Sbjct: 643 ANSRT 647



 Score = 45.1 bits (105), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 74/343 (21%), Positives = 124/343 (36%), Gaps = 58/343 (16%)

Query: 298 DVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQN 357
           D++   GR ++   A     QM S GL P   T+   I  + +    +   ++   M   
Sbjct: 338 DILCKAGRVED---AVSHFSQMVSEGLSPDIITFTSLIHGLCTIGEWKKVEKLSFEMINR 394

Query: 358 NLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTM---DKPERA 414
            + P    + T+     K   +  A    DQI          ++    D      K + +
Sbjct: 395 GIHPNAIFLNTIMDSLCKEGRVLEAHDFFDQIIHVGVKPDVVSYTILIDGYCLDGKMDES 454

Query: 415 IKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNI 473
           IK+  +M    LRPD  TY  L      +N   + G    +VD A    A+  +M   ++
Sbjct: 455 IKLLGRMVSIGLRPDNVTYSAL------LNGYCKNG----RVDDAL---ALYREMFSKDV 501

Query: 474 QHSHISMKNLLKALGAEGMI---RELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAME 530
           + + I+   +L  L   G +   RE      DS   LG  TYN VL  L E      A+ 
Sbjct: 502 KPNAITYNIILHGLFHAGRVVAAREFYMKIVDSGIQLGINTYNIVLGGLCENSFVDEALR 561

Query: 531 IFKQMKT-----------------------------------CGIPPNAATYNIMIDCCS 555
           +F+ +++                                    G+ P+A  Y +MI    
Sbjct: 562 MFQGLRSKEFQLEVRTFNIMIVGLLKVGRIGDAKSLFSAILPSGLVPDAIIYGLMIQSHI 621

Query: 556 IIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEA 598
                + +  L   M ++G    + T  A+++ LL+ GD   A
Sbjct: 622 EEGLLEESDELFLSMEKNGCTANSRTLNAIVRKLLEKGDVRRA 664


>gi|356498873|ref|XP_003518272.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 566

 Score = 85.9 bits (211), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 100/464 (21%), Positives = 186/464 (40%), Gaps = 33/464 (7%)

Query: 227 IFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNAL 286
           +F L   V  F   R  K  + + +H+         Y N   +G L+ S       LN  
Sbjct: 7   VFGLSGGVIDF---RKPKGTW-SRKHLGNCVFAVSKYENSGLKGNLQHSERFSKGALNG- 61

Query: 287 PVMKVLRWSFSDVIHACGRTQNSGLAE--QLMLQMQSLGLQPSSHTYDGFIRAIVSDRGL 344
            V   L +  S++ H C   +N  L E  + +  M + G  P        IR        
Sbjct: 62  -VNTSLNFEESEIHHLCRLIRNGELEEGSRFLEYMTNKGKIPDVVACTALIREFCKIGRT 120

Query: 345 RNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAA 404
           +N   ++ I++++      ++   L     K+ E++ A  +LD  S   N   + A L +
Sbjct: 121 KNATRIMGILEESGAVIDANSYNVLINAYCKSGEIEEALRVLDHTSVAPNAATYDAVLCS 180

Query: 405 CDTMDKPERAIKIFAK-MRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINA 463
                K ++A+++  + ++ K  PD+ T  +L       +   +   +F+++    R   
Sbjct: 181 LCDRGKLKQAMQVLDRQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEM----RGKG 236

Query: 464 IEMDMARNNIQHSHISMKNLLKALGAEGMIRELI-------QYFCDSKTPLGTPTYNTVL 516
            + D+   N+         L+K    EG + E I        Y C S       ++N +L
Sbjct: 237 CKPDVVTYNV---------LIKGFCKEGRLDEAIIFLKKLPSYGCQSDVI----SHNMIL 283

Query: 517 HSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFY 576
            SL        AM++   M   G  P+  T+NI+I+          A  ++ MM + G  
Sbjct: 284 RSLCSGGRWMDAMKLLATMLRKGCFPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHT 343

Query: 577 PQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFI 636
           P + ++  LI+   +    D A+  L+++   G   D++ YN +L   C+ G++D    I
Sbjct: 344 PNSRSFNPLIQGFCNRKGIDRAIEHLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVI 403

Query: 637 IEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRML 680
           + Q+      P   + + V  G +  G    A+E L+ +  + L
Sbjct: 404 LSQLSSKGCSPSLISYNTVIDGLLKVGKAELAVELLEEMCYKGL 447



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 84/363 (23%), Positives = 164/363 (45%), Gaps = 28/363 (7%)

Query: 304 GRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQD 363
           GRT+N   A ++M  ++  G    +++Y+  I A      +    E L+++   ++ P  
Sbjct: 118 GRTKN---ATRIMGILEESGAVIDANSYNVLINAYCKSGEIE---EALRVLDHTSVAPNA 171

Query: 364 STI-ATLSVECSKALELDLAEALLDQI--SRC-TNPKPFSAFLAACDTMDKPERAIKIFA 419
           +T  A L   C +  +L  A  +LD+   S+C  +    +  + A        +A+K+F 
Sbjct: 172 ATYDAVLCSLCDRG-KLKQAMQVLDRQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFN 230

Query: 420 KMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHI 478
           +MR K  +PD+ TY +L   F       +EG +   +   K++ +          Q   I
Sbjct: 231 EMRGKGCKPDVVTYNVLIKGF------CKEGRLDEAIIFLKKLPSY-------GCQSDVI 277

Query: 479 SMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQM 535
           S   +L++L + G   + ++           P   T+N +++ L +     +A+ + + M
Sbjct: 278 SHNMILRSLCSGGRWMDAMKLLATMLRKGCFPSVVTFNILINFLCQKGLLGKALNVLEMM 337

Query: 536 KTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDF 595
              G  PN+ ++N +I      +    A   + +MV  G YP  +TY  L+  L   G  
Sbjct: 338 PKHGHTPNSRSFNPLIQGFCNRKGIDRAIEHLEIMVSRGCYPDIVTYNILLTALCKDGKV 397

Query: 596 DEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFV 655
           D+A+ +L  +S +G    ++ YNT++    + G+ ++   ++E+M    ++PD  TC  V
Sbjct: 398 DDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKAELAVELLEEMCYKGLKPDLITCTSV 457

Query: 656 FSG 658
             G
Sbjct: 458 VGG 460



 Score = 44.3 bits (103), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 51/249 (20%), Positives = 96/249 (38%), Gaps = 55/249 (22%)

Query: 310 GLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL 369
           G A  ++  M   G  P+S +++  I+   + +G+   +E L+IM      P   T   L
Sbjct: 328 GKALNVLEMMPKHGHTPNSRSFNPLIQGFCNRKGIDRAIEHLEIMVSRGCYPDIVTYNIL 387

Query: 370 SVECSKALELDLAEALLDQIS-RCTNPK--PFSAFLAACDTMDKPERAIKIFAKMRQK-L 425
                K  ++D A  +L Q+S +  +P    ++  +     + K E A+++  +M  K L
Sbjct: 388 LTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKAELAVELLEEMCYKGL 447

Query: 426 RPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLK 485
           +PD+                                                I+  +++ 
Sbjct: 448 KPDL------------------------------------------------ITCTSVVG 459

Query: 486 ALGAEGMIRELIQYFCDSKTPLGTPT---YNTVLHSLVEAQESHRAMEIFKQMKTCGIPP 542
            L  EG + E I++F   K     P    YN+++  L +AQ++  A++    M   G  P
Sbjct: 460 GLSREGKVHEAIKFFHYLKGFGIKPNAFIYNSIMMGLCKAQQTSLAIDFLVDMVANGCKP 519

Query: 543 NAATYNIMI 551
             A+Y  +I
Sbjct: 520 TEASYTTLI 528


>gi|359490245|ref|XP_002268526.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g62370-like [Vitis vinifera]
          Length = 1101

 Score = 85.9 bits (211), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 78/380 (20%), Positives = 159/380 (41%), Gaps = 9/380 (2%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           ++ +IH   R +    A ++ L+M  +G  P ++TY+  I   V       G  +   M 
Sbjct: 272 YTSLIHGYCRGKKMRTAMRVFLRMLKMGCDPDTYTYNTLIHGFVKLGLFDKGWILHNQMS 331

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAI 415
           +  L+P   T   +     +  ++D A  LL  +S         ++      + K  R +
Sbjct: 332 EWGLQPNVVTYHIMIRRYCEEGKVDCALTLLSSMSSFNLTPSVHSYTVLITALYKENRLV 391

Query: 416 KIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQH 475
           ++    ++ L   +    +LF           E ++  ++  A   N   +D+   +   
Sbjct: 392 EVEELYKKMLDIGVVPDHVLFFTLMQKQPKGHELHLALKILQAIAKNGCNLDLCLLSTSA 451

Query: 476 SHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQM 535
           +H   +++ + +  E ++ E+++        L    +   + +L  A ++  A+    +M
Sbjct: 452 THSPTQDVEQEI--ECLLGEIVR----RNFALADVAFGIFISALCAAGKTDAALLFMDKM 505

Query: 536 KTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDF 595
            + G  P  +TYN +I C    R  + A +L+ +M  +G  P   TY  ++    ++GD 
Sbjct: 506 VSLGCRPLLSTYNSLIKCLFQERLVEDAKSLIDLMQENGIVPDLATYLIMVHEHCNHGDL 565

Query: 596 DEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFV 655
             A  LLD ++  G+   V +Y++I+     + RI   E + + M +  V PD      +
Sbjct: 566 ASAFGLLDQMNERGLKPSVAIYDSIIGCLSRRKRILEAENVFKMMLEAGVDPDAIIYVTM 625

Query: 656 FSGYVNCGFHNSAMEALQVL 675
            SGY     +  A+EA Q+ 
Sbjct: 626 ISGYSK---NRRAIEARQLF 642



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 130/585 (22%), Positives = 219/585 (37%), Gaps = 101/585 (17%)

Query: 124 CYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDL 183
           C+  ++  LC  G+++EA  +   + ER G+   + +Y +      +   +  A L +  
Sbjct: 200 CFNRLIDGLCDKGHVDEAFYMFDTMRERTGLPATIHLYKTLFYGLCRQERVEEAELFVGE 259

Query: 184 MDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDL 243
           M+S     +++ YT L+      K +                   ++R F+       D 
Sbjct: 260 MESEGHFIDKMMYTSLIHGYCRGKKMRT-----------------AMRVFLRMLKMGCDP 302

Query: 244 KS-AYETLQH-MVALAMMGKLYI--NRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDV 299
            +  Y TL H  V L +  K +I  N+ SE  L+          N +    ++R    + 
Sbjct: 303 DTYTYNTLIHGFVKLGLFDKGWILHNQMSEWGLQP---------NVVTYHIMIRRYCEEG 353

Query: 300 IHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNL 359
              C  T        L+  M S  L PS H+Y   I A+  +  L    E+ K M    +
Sbjct: 354 KVDCALT--------LLSSMSSFNLTPSVHSYTVLITALYKENRLVEVEELYKKMLDIGV 405

Query: 360 KPQDSTIATLSVECSKALELDLA-----------------------------------EA 384
            P      TL  +  K  EL LA                                   E 
Sbjct: 406 VPDHVLFFTLMQKQPKGHELHLALKILQAIAKNGCNLDLCLLSTSATHSPTQDVEQEIEC 465

Query: 385 LLDQISR---CTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFG 440
           LL +I R         F  F++A     K + A+    KM     RP + TY  L     
Sbjct: 466 LLGEIVRRNFALADVAFGIFISALCAAGKTDAALLFMDKMVSLGCRPLLSTYNSL----- 520

Query: 441 NVNAPYEEGNMFSQVDSAKRI------NAIEMDMARNNIQ-HSHISMKNLLKALGAEGMI 493
            +   ++E      V+ AK +      N I  D+A   I  H H +  +L  A G     
Sbjct: 521 -IKCLFQE----RLVEDAKSLIDLMQENGIVPDLATYLIMVHEHCNHGDLASAFG----- 570

Query: 494 RELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC 553
             L+    +         Y++++  L   +    A  +FK M   G+ P+A  Y  MI  
Sbjct: 571 --LLDQMNERGLKPSVAIYDSIIGCLSRRKRILEAENVFKMMLEAGVDPDAIIYVTMISG 628

Query: 554 CSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHD 613
            S  R    A  L   M+  GF P + +YTA+I  L+     D+  + L  +  +G   +
Sbjct: 629 YSKNRRAIEARQLFDKMIEHGFQPSSHSYTAVISGLVKENMIDKGCSYLSDMLKDGFVPN 688

Query: 614 VLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
            +LY +++ +   KG ++    +++ M +N+++ D  TC  + SG
Sbjct: 689 TVLYTSLINQFLRKGELEFAFRLVDLMDRNQIECDMITCIALVSG 733



 Score = 66.6 bits (161), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 121/564 (21%), Positives = 202/564 (35%), Gaps = 107/564 (18%)

Query: 116 KEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGE--RYGIYPILPVYNSFLGACAKLHS 173
           +   L +  + + + ALC  G  + A   + F+ +    G  P+L  YNS +    +   
Sbjct: 473 RNFALADVAFGIFISALCAAGKTDAA---LLFMDKMVSLGCRPLLSTYNSLIKCLFQERL 529

Query: 174 MVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKF 233
           +  A   +DLM    +  +  TY            L  VHE    +  H           
Sbjct: 530 VEDAKSLIDLMQENGIVPDLATY------------LIMVHE----HCNH----------- 562

Query: 234 VWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRL-RSSRLDIPIPLNALPVMKVL 292
                   DL SA+  L  M    +   + I  +  G L R  R+     L A  V K++
Sbjct: 563 -------GDLASAFGLLDQMNERGLKPSVAIYDSIIGCLSRRKRI-----LEAENVFKMM 610

Query: 293 RWSFSD--------VIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGL 344
             +  D        +I    + + +  A QL  +M   G QPSSH+Y   I  +V +  +
Sbjct: 611 LEAGVDPDAIIYVTMISGYSKNRRAIEARQLFDKMIEHGFQPSSHSYTAVISGLVKENMI 670

Query: 345 RNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAA 404
             G   L  M ++   P      +L  +  +  EL+ A  L+D + R             
Sbjct: 671 DKGCSYLSDMLKDGFVPNTVLYTSLINQFLRKGELEFAFRLVDLMDRNQ---------IE 721

Query: 405 CDTMDKPERAIKIFAKMRQKLRP-----------DIRTYELLFSLFGNVNAPYEEGNMFS 453
           CD +      I + + + + + P             R  E+L  L         E N+  
Sbjct: 722 CDMIT----CIALVSGVSRNITPVRRRWYHVKSGSARVREILLHLLHQSFVIPRENNLSF 777

Query: 454 QVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYN 513
              S ++I    +               NL++ +     +  L               YN
Sbjct: 778 PRGSPRKIKYFAL---------------NLMQKIKGSSFMPNLY-------------LYN 809

Query: 514 TVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRD 573
            ++     A     A   F+ M+T G+ PN  T+ I+I+  +       A  L + M  D
Sbjct: 810 GIISGFCRANMIQDAYNHFELMQTEGVCPNQVTFTILINGHTRFGEIDHAIGLFNKMNAD 869

Query: 574 GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVI 633
           G  P  +TY ALIK L   G   +AL++   +   G+  +   Y  +LK  C    + V 
Sbjct: 870 GLAPDGITYNALIKGLCKAGRLLDALSVSHTMHKRGLFPNKSSYEKLLKCLCAS-HLGVH 928

Query: 634 EF-IIEQMHQNKVQPDPSTCHFVF 656
            F I E+M  +   P    C+++ 
Sbjct: 929 AFKIFEEMLSHDYVPCWYNCNWLL 952



 Score = 42.7 bits (99), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 44/198 (22%), Positives = 74/198 (37%), Gaps = 4/198 (2%)

Query: 483 LLKALGAEGMIRELIQYFC---DSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKT-C 538
           +L+ L A   + E   YF    D    +G   +N ++  L +      A  +F  M+   
Sbjct: 169 MLRELCARERVLEAFDYFVRINDVGILMGLWCFNRLIDGLCDKGHVDEAFYMFDTMRERT 228

Query: 539 GIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEA 598
           G+P     Y  +          + A   V  M  +G +   M YT+LI           A
Sbjct: 229 GLPATIHLYKTLFYGLCRQERVEEAELFVGEMESEGHFIDKMMYTSLIHGYCRGKKMRTA 288

Query: 599 LNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
           + +   +   G   D   YNT++    + G  D    +  QM +  +QP+  T H +   
Sbjct: 289 MRVFLRMLKMGCDPDTYTYNTLIHGFVKLGLFDKGWILHNQMSEWGLQPNVVTYHIMIRR 348

Query: 659 YVNCGFHNSAMEALQVLS 676
           Y   G  + A+  L  +S
Sbjct: 349 YCEEGKVDCALTLLSSMS 366


>gi|255577348|ref|XP_002529554.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223530966|gb|EEF32823.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 678

 Score = 85.9 bits (211), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 78/365 (21%), Positives = 159/365 (43%), Gaps = 18/365 (4%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           ++++ +I +  R   +  A +++  M+  GL PS  +Y+  I  +  +RG     ++ + 
Sbjct: 312 FAYAHMIDSLCRAGKNHGASRIVYMMKKKGLTPSLVSYNSIIHGLCKERGCMRAYQLFEE 371

Query: 354 MQQNNLKPQDSTIATLSVECSKALELD----LAEALL--DQISRCTNPKPFSAFLAA-CD 406
             +    P + T   L     + ++LD    + EA+L  D + R    + ++ +L A C 
Sbjct: 372 GIEFGYLPSEYTYKVLVEALCQEMDLDKARRIVEAMLNKDGVDR---TRIYNIYLRALCL 428

Query: 407 TMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM 466
           T    E    + + ++ + +PD+ T   + + F  ++   E   + + +   K       
Sbjct: 429 TNSATELLNVLVSMLQTECQPDVITLNTVVNGFCKMHRIEEALTILTDMTMGKFC----- 483

Query: 467 DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESH 526
             A + +  + I +  LL A  ++  +  L +   +     G  TYN V+H L + Q + 
Sbjct: 484 --APDAVTFTTI-IAGLLNAGRSQEALNLLYKVMHEKGISPGVETYNAVIHGLFKLQLAE 540

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
            AM  FK+M   G+  ++ TY ++ID          A  L   ++          Y +++
Sbjct: 541 EAMRAFKRMLAAGVAADSKTYTLIIDGLCESGLIDKAKKLWDDVIWPSRIHDDFVYASIL 600

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
           K L   G  DEA + L  +   G+  +++ YN ++  AC+ G       ++ +M +N + 
Sbjct: 601 KGLCRAGKLDEACHFLYELVDSGVSPNIISYNIVIDSACKLGMKREAYQVVTEMRKNGLT 660

Query: 647 PDPST 651
           PD  T
Sbjct: 661 PDAVT 665



 Score = 62.8 bits (151), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 86/372 (23%), Positives = 158/372 (42%), Gaps = 43/372 (11%)

Query: 372 ECSKALELDLAEALL-DQISR--CTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRP 427
           +C +  + D+A  LL D ISR  C N   F++ L     + +   A K+F +MR+  + P
Sbjct: 174 QCCEFSQPDVAHRLLFDMISRGHCPNVVTFTSLLTGYCRVGEVGNAYKLFDEMRECSVVP 233

Query: 428 DIRTYELLF-------------SLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQ 474
           +  TY +L               L  N+    ++      V++A  +N I+  + R    
Sbjct: 234 NSLTYSVLIRGLLRQGDFEHGRELMCNLWETMKDEEKNQSVNAAAFVNVID-SLCREGFL 292

Query: 475 HSHISMKNLL---KALGAEGMIRELIQYFCDSKTPLG-------------TPT---YNTV 515
           +    +   +   K++  E     +I   C +    G             TP+   YN++
Sbjct: 293 NDVFKIAEDMPQGKSVNQEFAYAHMIDSLCRAGKNHGASRIVYMMKKKGLTPSLVSYNSI 352

Query: 516 LHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC-CSIIRCFKSASALVSMMVRDG 574
           +H L + +   RA ++F++    G  P+  TY ++++  C  +   K+   + +M+ +DG
Sbjct: 353 IHGLCKERGCMRAYQLFEEGIEFGYLPSEYTYKVLVEALCQEMDLDKARRIVEAMLNKDG 412

Query: 575 FYPQTMTYTALIKILLDYGDFDEALN-LLDLVSLEGIPHDVLLYNTILKKACEKGRIDVI 633
              +T  Y   ++ L       E LN L+ ++  E  P DV+  NT++   C+  RI+  
Sbjct: 413 V-DRTRIYNIYLRALCLTNSATELLNVLVSMLQTECQP-DVITLNTVVNGFCKMHRIEEA 470

Query: 634 EFIIEQMHQNK-VQPDPSTCHFVFSGYVNCGFHNSAMEAL-QVLSMRMLCEEVSTLEEKR 691
             I+  M   K   PD  T   + +G +N G    A+  L +V+  + +   V T     
Sbjct: 471 LTILTDMTMGKFCAPDAVTFTTIIAGLLNAGRSQEALNLLYKVMHEKGISPGVETYNAVI 530

Query: 692 SDFEDLILAEDS 703
                L LAE++
Sbjct: 531 HGLFKLQLAEEA 542



 Score = 45.1 bits (105), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 64/327 (19%), Positives = 122/327 (37%), Gaps = 35/327 (10%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           S++ +IH   + +    A QL  +    G  PS +TY   + A+  +  L     +++ M
Sbjct: 348 SYNSIIHGLCKERGCMRAYQLFEEGIEFGYLPSEYTYKVLVEALCQEMDLDKARRIVEAM 407

Query: 355 -QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPK--PFSAFLAACDTMDKP 411
             ++ +         L   C      +L   L+  +     P     +  +     M + 
Sbjct: 408 LNKDGVDRTRIYNIYLRALCLTNSATELLNVLVSMLQTECQPDVITLNTVVNGFCKMHRI 467

Query: 412 ERAIKIFAKMR--QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI-------N 462
           E A+ I   M   +   PD  T+  + +   N     E  N+  +V   K I       N
Sbjct: 468 EEALTILTDMTMGKFCAPDAVTFTTIIAGLLNAGRSQEALNLLYKVMHEKGISPGVETYN 527

Query: 463 AIEMDMARNNIQHSHISMKNLLKALGA------------------EGMIRELIQYFCDSK 504
           A+   + +  +Q +  +M+   + L A                   G+I +  + + D  
Sbjct: 528 AVIHGLFK--LQLAEEAMRAFKRMLAAGVAADSKTYTLIIDGLCESGLIDKAKKLWDDVI 585

Query: 505 TPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFK 561
            P        Y ++L  L  A +   A     ++   G+ PN  +YNI+ID    +   +
Sbjct: 586 WPSRIHDDFVYASILKGLCRAGKLDEACHFLYELVDSGVSPNIISYNIVIDSACKLGMKR 645

Query: 562 SASALVSMMVRDGFYPQTMTYTALIKI 588
            A  +V+ M ++G  P  +T+  L K+
Sbjct: 646 EAYQVVTEMRKNGLTPDAVTWRILDKL 672


>gi|297737369|emb|CBI26570.3| unnamed protein product [Vitis vinifera]
          Length = 1042

 Score = 85.9 bits (211), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 70/284 (24%), Positives = 127/284 (44%), Gaps = 26/284 (9%)

Query: 349 EVLKIMQQNNLKPQDSTIATL--SVECSKALELDLAEALLDQISRCTNPKP----FSAFL 402
           E+L +M+    +P   +  TL  +   S  +  +LA  LL+++ R +  +P    ++  +
Sbjct: 218 ELLDLMRSRGCEPDLVSFNTLINARLKSGTMVTNLAIELLNEVRR-SGIQPDIITYNTLI 276

Query: 403 AACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI 461
           +AC      E A+K++  M   + +PD+ TY  + S++G      E G +F  ++S    
Sbjct: 277 SACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMISVYGRCGMSREAGRLFKDLES---- 332

Query: 462 NAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP----TYNTVLH 517
                           ++  +LL A   EG + + ++  C+    +G      TYNT++H
Sbjct: 333 ---------KGFLPDAVTYNSLLYAFAREGNVDK-VKEICEDMVKMGFGKDEMTYNTIIH 382

Query: 518 SLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYP 577
              +  +   A +++  MK  G  P+A TY ++ID        K A+ ++S M+     P
Sbjct: 383 MYGKRGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSEMLNARVKP 442

Query: 578 QTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTIL 621
              T++ALI      G   EA    D +   GI  D L Y+ +L
Sbjct: 443 TLRTFSALICGYAKAGKRVEAEETFDCMLRSGIKPDHLAYSVML 486



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/254 (23%), Positives = 102/254 (40%), Gaps = 18/254 (7%)

Query: 427 PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM--DMARNNIQHSHISMKNLL 484
           PD+ ++  L      +NA  + G M + +       AIE+  ++ R+ IQ   I+   L+
Sbjct: 230 PDLVSFNTL------INARLKSGTMVTNL-------AIELLNEVRRSGIQPDIITYNTLI 276

Query: 485 KALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIP 541
            A   E  + E ++ + D       P   TYN ++        S  A  +FK +++ G  
Sbjct: 277 SACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMISVYGRCGMSREAGRLFKDLESKGFL 336

Query: 542 PNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNL 601
           P+A TYN ++   +          +   MV+ GF    MTY  +I +    G  D A  L
Sbjct: 337 PDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIHMYGKRGQHDLAFQL 396

Query: 602 LDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVN 661
              + L G   D + Y  ++    +   I     ++ +M   +V+P   T   +  GY  
Sbjct: 397 YSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSEMLNARVKPTLRTFSALICGYAK 456

Query: 662 CGFHNSAMEALQVL 675
            G    A E    +
Sbjct: 457 AGKRVEAEETFDCM 470



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/263 (21%), Positives = 113/263 (42%), Gaps = 15/263 (5%)

Query: 412 ERAIKIFA--KMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
           +RA++++    +R    P+ R    + S+ G  N       +F++ ++A           
Sbjct: 144 QRALEVYEWLNLRHWYSPNARMLATILSVLGKANQEALAVEIFARAEAAS---------- 193

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQE--SHR 527
             N    + +M  +    G    ++EL+             ++NT++++ +++    ++ 
Sbjct: 194 -GNTVQVYNAMMGVYARTGRFTKVQELLDLMRSRGCEPDLVSFNTLINARLKSGTMVTNL 252

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A+E+  +++  GI P+  TYN +I  CS     + A  + + MV     P   TY A+I 
Sbjct: 253 AIELLNEVRRSGIQPDIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMIS 312

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
           +    G   EA  L   +  +G   D + YN++L     +G +D ++ I E M +     
Sbjct: 313 VYGRCGMSREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGK 372

Query: 648 DPSTCHFVFSGYVNCGFHNSAME 670
           D  T + +   Y   G H+ A +
Sbjct: 373 DEMTYNTIIHMYGKRGQHDLAFQ 395



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 119/588 (20%), Positives = 231/588 (39%), Gaps = 37/588 (6%)

Query: 67  ERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYL 126
           +R+   +  LNL H  +S  A     IL+   ++      +E +   E    G   + Y 
Sbjct: 144 QRALEVYEWLNLRH-WYSPNARMLATILSVLGKANQEALAVEIFARAEAAS-GNTVQVYN 201

Query: 127 LMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDS 186
            MM    + G   +   L+  +  R G  P L  +N+ + A  K  +MV  NL ++L++ 
Sbjct: 202 AMMGVYARTGRFTKVQELLDLMRSR-GCEPDLVSFNTLINARLKSGTMV-TNLAIELLNE 259

Query: 187 -RMVG--KNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHY-SLSIFSLRKFVWSFTRLRD 242
            R  G   + +TY  L+     + NL    +++ D + H     +++    +  + R   
Sbjct: 260 VRRSGIQPDIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMISVYGRCGM 319

Query: 243 LKSAYETLQHMVALAMM------GKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSF 296
            + A    + + +   +        L      EG +   + +I   +  +   K    ++
Sbjct: 320 SREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVK-EICEDMVKMGFGKD-EMTY 377

Query: 297 SDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQ 356
           + +IH  G+     LA QL   M+  G  P + TY   I ++     ++   EV+  M  
Sbjct: 378 NTIIHMYGKRGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSEMLN 437

Query: 357 NNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDKPE 412
             +KP   T + L    +KA +   AE   D + R +  KP    +S  L      ++  
Sbjct: 438 ARVKPTLRTFSALICGYAKAGKRVEAEETFDCMLR-SGIKPDHLAYSVMLDILLRFNESG 496

Query: 413 RAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAP----------YEEGNMFSQVDSAKRI 461
           +A+K++ +M     +PD   YE++  + G  N             E   M SQV  +  +
Sbjct: 497 KAMKLYQEMVLHSFKPDHALYEVMLRVLGKENREEDVHKVVKDMEELCGMNSQVICSILV 556

Query: 462 NAIEMDMARNNI-----QHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVL 516
                D A N +     Q   +      +  G      EL +     +  L    Y+ ++
Sbjct: 557 KGECFDHAANMLRLAISQGCELDQYGKARDFGLFCGTEELFEGLLSKECKLDRSFYHIMM 616

Query: 517 HSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFY 576
                +    +A ++   MK  G+ P  AT ++++   S     + A  ++  +  +G  
Sbjct: 617 KMFRNSGNHSKAEKLLGVMKEAGVEPTIATMHLLMVSYSGSGQPEEAEKVLDNLKVEGLP 676

Query: 577 PQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKA 624
             T+ Y+++I   L  GD + A+  L  +  +G+  D  ++   ++ A
Sbjct: 677 LSTLPYSSVIDAYLKNGDHNVAIQKLMEMKKDGLEPDHRIWTCFVRAA 724



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 104/528 (19%), Positives = 194/528 (36%), Gaps = 103/528 (19%)

Query: 160 VYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTEL----LKLAVWQKNLSA--VH 213
           VYN+ +G  A+          LDLM SR    + V++  L    LK      NL+   ++
Sbjct: 199 VYNAMMGVYARTGRFTKVQELLDLMRSRGCEPDLVSFNTLINARLKSGTMVTNLAIELLN 258

Query: 214 EIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLR 273
           E+    I+     I +    + + +R  +L+ A +    MVA      L           
Sbjct: 259 EVRRSGIQP---DIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPDL----------- 304

Query: 274 SSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDG 333
                               W+++ +I   GR   S  A +L   ++S G  P + TY+ 
Sbjct: 305 --------------------WTYNAMISVYGRCGMSREAGRLFKDLESKGFLPDAVTYNS 344

Query: 334 FIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI---S 390
            + A   +  +    E+ + M +      + T  T+     K  + DLA  L   +    
Sbjct: 345 LLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIHMYGKRGQHDLAFQLYSDMKLSG 404

Query: 391 RCTNPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEG 449
           R  +   ++  + +    +  + A ++ ++M   +++P +RT+  L   +          
Sbjct: 405 RSPDAVTYTVLIDSLGKANMIKEAAEVMSEMLNARVKPTLRTFSALICGYAK-------- 456

Query: 450 NMFSQVDSAKRINAIEMD--MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPL 507
                  + KR+ A E    M R+ I+  H++                            
Sbjct: 457 -------AGKRVEAEETFDCMLRSGIKPDHLA---------------------------- 481

Query: 508 GTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALV 567
               Y+ +L  L+   ES +AM+++++M      P+ A Y +M+         ++    V
Sbjct: 482 ----YSVMLDILLRFNESGKAMKLYQEMVLHSFKPDHALYEVMLRVLGK----ENREEDV 533

Query: 568 SMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEK 627
             +V+D      M    +  IL+    FD A N+L L   +G   D         KA + 
Sbjct: 534 HKVVKDMEELCGMNSQVICSILVKGECFDHAANMLRLAISQGCELDQ------YGKARDF 587

Query: 628 GRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
           G     E + E +   + + D S  H +   + N G H+ A + L V+
Sbjct: 588 GLFCGTEELFEGLLSKECKLDRSFYHIMMKMFRNSGNHSKAEKLLGVM 635


>gi|357515141|ref|XP_003627859.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355521881|gb|AET02335.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 731

 Score = 85.9 bits (211), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 110/492 (22%), Positives = 204/492 (41%), Gaps = 41/492 (8%)

Query: 216 WEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSS 275
           W   I HY+ S+ S    +   T+ R  K+A + L  M    ++    +  TS  R+   
Sbjct: 67  WAQSIPHYTHSLHSSWSMIHMLTKHRHFKTAQQVLDKMAQREILSSPSV-LTSLVRIH-- 123

Query: 276 RLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFI 335
             D P  +N+     VL W    VIH   +++ +  A Q+  QM    L+P  H     +
Sbjct: 124 --DDP-EVNS----HVLSWI---VIHY-AKSKMTHDAVQVFEQMSLCNLKPHLHACTVLM 172

Query: 336 RAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQIS-RCTN 394
            +++ D       +V K M Q+ + P       L   CSK+ +++ AE +L+++  +   
Sbjct: 173 NSLLKDGITSMVWKVYKRMVQDGVVPNIYVYNCLIHACSKSRDVERAEFILNEMEVKGVV 232

Query: 395 PKPFS--AFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNM 451
           P  F+    +A          A+ +  KM R+ +  DI +Y  L   F       E   M
Sbjct: 233 PDIFTYNTLIALYCKKGLHYEALSVQDKMEREGINLDIVSYNSLIYGFCKEGKMREAMRM 292

Query: 452 FSQV--------------DSAKRINAIEMD------MARNNIQHSHISMKNLLKALGAEG 491
           F ++              D   + N  E        M    +    ++  ++L+ L ++G
Sbjct: 293 FGEIKDAIPNHVTYTTLIDGYCKANEFEEALRLREMMVAKGLYPGVVTYNSILRKLCSDG 352

Query: 492 MIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYN 548
            IR+   L+    + K    + T NT++++  +  + + A++   +M   G+ PN+ TY 
Sbjct: 353 RIRDANKLLHEMSERKVQADSVTCNTLINAYCKIGDLNSALKFKTKMLEAGLTPNSFTYK 412

Query: 549 IMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLE 608
            +I         +SA  L+  M+  GF P   TY+ ++       + D  L L D    +
Sbjct: 413 ALIHGFCKTSELESAKELLFGMLDAGFSPNYRTYSWIVDSYCKKDNTDAVLALPDEFLSK 472

Query: 609 GIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSA 668
           G   ++ LY  ++++ C+  RI+  E ++  M    +  D      +   Y   G  N+A
Sbjct: 473 GFCLNISLYRALIRRLCKIERIECAEKLLYHMEGKGISGDSVIYTSLAFSYWKSGNTNAA 532

Query: 669 MEALQVLSMRML 680
            + L+ ++ R L
Sbjct: 533 SDMLEEMARRRL 544



 Score = 40.8 bits (94), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 63/320 (19%), Positives = 126/320 (39%), Gaps = 51/320 (15%)

Query: 127 LMMQALCKGGYLEEASNLIYFLGERY---GIYPILPVYNSFLGACAKLHSMVHANLCLDL 183
           ++M +L K G     +++++ + +R    G+ P + VYN  + AC+K   +  A   L+ 
Sbjct: 170 VLMNSLLKDG----ITSMVWKVYKRMVQDGVVPNIYVYNCLIHACSKSRDVERAEFILNE 225

Query: 184 MDSRMVGKNEVTYTELLKL----AVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTR 239
           M+ + V  +  TY  L+ L     +  + LS   ++  + I   +L I S    ++ F +
Sbjct: 226 MEVKGVVPDIFTYNTLIALYCKKGLHYEALSVQDKMEREGI---NLDIVSYNSLIYGFCK 282

Query: 240 LRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDV 299
                                        EG++R +        +A+P       +++ +
Sbjct: 283 -----------------------------EGKMREAMRMFGEIKDAIPN----HVTYTTL 309

Query: 300 IHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNL 359
           I    +      A +L   M + GL P   TY+  +R + SD  +R+  ++L  M +  +
Sbjct: 310 IDGYCKANEFEEALRLREMMVAKGLYPGVVTYNSILRKLCSDGRIRDANKLLHEMSERKV 369

Query: 360 KPQDSTIATLSVECSKALELDLA---EALLDQISRCTNPKPFSAFLAA-CDTMDKPERAI 415
           +    T  TL     K  +L+ A   +  + +     N   + A +   C T +      
Sbjct: 370 QADSVTCNTLINAYCKIGDLNSALKFKTKMLEAGLTPNSFTYKALIHGFCKTSELESAKE 429

Query: 416 KIFAKMRQKLRPDIRTYELL 435
            +F  +     P+ RTY  +
Sbjct: 430 LLFGMLDAGFSPNYRTYSWI 449


>gi|115482712|ref|NP_001064949.1| Os10g0495200 [Oryza sativa Japonica Group]
 gi|78708847|gb|ABB47822.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639558|dbj|BAF26863.1| Os10g0495200 [Oryza sativa Japonica Group]
          Length = 782

 Score = 85.9 bits (211), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 122/580 (21%), Positives = 227/580 (39%), Gaps = 32/580 (5%)

Query: 125 YLLMMQALCKGGYLE---EASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCL 181
           Y +++   C+ G L+    A   +   G R       P+     G CA   +    ++ L
Sbjct: 95  YAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLK---GLCADKRTSDAMDIVL 151

Query: 182 DLMDSRMVGKNEVTYTELLKLAV----WQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSF 237
             M       +  +Y  LLK        Q+ L  +H + +D        + S    +  F
Sbjct: 152 RRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGF 211

Query: 238 TRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRL-RSSRLDIPIP-LNALPVMKVLR-- 293
            +  D   AY T   M+   ++  +    +    L ++  +D  +  LN +    V+   
Sbjct: 212 FKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDC 271

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
            +++ ++H    +     A   + +M+S G++P+  TY   +  +  +       ++   
Sbjct: 272 MTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDS 331

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMD 409
           M +  L+P  +T  TL    +    L    ALLD + R    +P    F+  + A    +
Sbjct: 332 MTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVR-NGIQPDHHVFNILICAYAKQE 390

Query: 410 KPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQ-VDSAKRINAIEMD 467
           K ++A+ +F+KMRQ  L P++  Y  +  +     +  +    F Q +D     N I   
Sbjct: 391 KVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNII--- 447

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHR 527
               ++ H   +     KA        ELI    D    L T  +N+++ S  +      
Sbjct: 448 -VYTSLIHGLCTCDKWDKA-------EELILEMLDRGICLNTIFFNSIIDSHCKEGRVIE 499

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           + ++F  M   G+ P+  TYN +ID C +      A+ L++ MV  G  P  +TY  LI 
Sbjct: 500 SEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLIN 559

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
                   D+AL L   +   G+  +++ YN IL+      R    + +   + ++  Q 
Sbjct: 560 GYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQL 619

Query: 648 DPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTL 687
           + ST + +  G       + A+   Q L +  L  E  T 
Sbjct: 620 ELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTF 659



 Score = 70.9 bits (172), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 130/611 (21%), Positives = 244/611 (39%), Gaps = 49/611 (8%)

Query: 58  QIVDALCRGERSRASHLLLNLGHAHHSLGAD----DFFHILNYCARSPDPLFVMETWRMM 113
            ++  LC   RS+ +  LL++       G+      +  +LN   +  D      T+  M
Sbjct: 168 NLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEM 227

Query: 114 EEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFL-GACAKLH 172
            ++ I  +   Y  ++ ALCK   +++A  ++  +  + G+ P    YNS L G C+   
Sbjct: 228 LDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTM-VKNGVMPDCMTYNSILHGYCSSGQ 286

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH-YSLSIFSLR 231
               A   L  M S  V  N VTY+ L+         +   +I++   K      I + R
Sbjct: 287 PK-EAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYR 345

Query: 232 KFVWSFTRLRDLKSAYETLQHMVALAMMGKLYI-NRTSEGRLRSSRLDIPIPLNALPVMK 290
             +  +     L   +  L  MV   +    ++ N       +  ++D      A+ V  
Sbjct: 346 TLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVD-----QAMLVFS 400

Query: 291 VLRWSFSDVIHACGRTQ-----NSGLAEQLML---QMQSLGLQPSSHTYDGFIRAIVS-D 341
            +R    +    C  T       SG  +  ML   QM   GL P+   Y   I  + + D
Sbjct: 401 KMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCD 460

Query: 342 RGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP---- 397
           +  +    +L+++ +          + +   C +   ++ +E L D + R    KP    
Sbjct: 461 KWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIE-SEKLFDLMVR-IGVKPDIIT 518

Query: 398 FSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQ-V 455
           ++  +  C    K + A K+ A M    ++PDI TY  L + +  V+   +   +F + V
Sbjct: 519 YNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMV 578

Query: 456 DSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTV 515
            S    N I  ++    + H+  +              +EL      S T L   TYN +
Sbjct: 579 SSGVSPNIITYNIILQGLFHTRRT-----------AAAKELYVSITKSGTQLELSTYNII 627

Query: 516 LHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFK--SASALVSMMVRD 573
           LH L +   +  A+ +F+ +    +     T+NIMI   ++++C +   A  L +    +
Sbjct: 628 LHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIG--ALLKCGRMDEAKDLFAAHSAN 685

Query: 574 GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG---RI 630
           G  P   TY+ + + L++ G  +E  +L   +   G   D  + N+I++K  ++G   R 
Sbjct: 686 GLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKLLQRGDITRA 745

Query: 631 DVIEFIIEQMH 641
               F+I++ H
Sbjct: 746 GTYLFMIDEKH 756



 Score = 45.8 bits (107), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 73/167 (43%), Gaps = 9/167 (5%)

Query: 528 AMEIFKQMKTCG---IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
           A+  + +M   G   + P   TY I+I CC          A +  +V+ GF    +T+T 
Sbjct: 73  AVSRYNRMARAGAGKVTPTVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTP 132

Query: 585 LIKILLDYGDFDEALNLL--DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642
           L+K L       +A++++   +  L  IP DV  YN +LK  C++ R      ++  M  
Sbjct: 133 LLKGLCADKRTSDAMDIVLRRMTELGCIP-DVFSYNNLLKGLCDENRSQEALELLHMMAD 191

Query: 643 NK---VQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           ++     PD  + + V +G+   G  + A      +  R +  +V T
Sbjct: 192 DRGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVT 238


>gi|297797161|ref|XP_002866465.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297312300|gb|EFH42724.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 977

 Score = 85.9 bits (211), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 130/637 (20%), Positives = 238/637 (37%), Gaps = 92/637 (14%)

Query: 112 MMEEKEIGL--NNKCYLLMMQALCKGGYLEEASNLIY-FLGERYGIYPILPVYNSFLGAC 168
           ++E   +GL  +N  Y +++  L KG   + A+ L++  +   + I P++  Y+ F+   
Sbjct: 303 LVEMNSVGLFADNVAYSILIDGLLKGRNADAANGLVHEMVSHGFSIDPMM--YDYFICVM 360

Query: 169 AKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK-HYSLSI 227
           +K  +M  A    D M +  V      Y  L++    +KN+   +E+  +  K +  +S 
Sbjct: 361 SKEGAMEKAKALFDGMITFGVTPGARAYASLIEGFFREKNVRKGYELLVEIKKRNIVISP 420

Query: 228 FSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRT-SEGRLRSSRLDIPIPLNAL 286
           ++    V       DL  AY  ++ M A      + I  T  +  L+ SR       +A+
Sbjct: 421 YTYGTAVKGMCSSGDLDGAYNIVKEMGASGCRPNVVIYTTLIKTFLQKSRFG-----DAV 475

Query: 287 PVMKVLR--------WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAI 338
            V+K +R        + ++ +I    + +    A   +L+M   G +P + TY  FI   
Sbjct: 476 RVLKEMREQGIAPDTFCYNSLIIGLSKAKKMDEARSFLLEMVENGFKPDAFTYGAFISGY 535

Query: 339 VSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVE-CSKALELDLAEALLDQISR--CTNP 395
           +      +  + +K M +  + P       L  E C K   ++   A    + +    + 
Sbjct: 536 IEAGEFASADKYVKEMLECGVIPNKVLCTGLINEYCKKGKVIEACSAFRSMVEQGILGDA 595

Query: 396 KPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQ 454
           K ++  +       K   A +IF +MR K + PD+ +Y  L   F  +    +  ++F +
Sbjct: 596 KTYTVLMNGLVKNGKVNDAEEIFHEMRGKGIAPDVFSYGTLIDGFSKLGNMQKASSIFDE 655

Query: 455 VDSAK----------------RINAIEM------DMARNNIQHSHISMKNLLKALGAEGM 492
           +  A                 R   IE       +M+      + ++   ++      G 
Sbjct: 656 MVQAGLTSNVIIYNMLLGGFCRSGEIEKAKELLDEMSGKGFPPNAVTYCTIIDGYCKSGD 715

Query: 493 IRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFK-QMKTCGIP------- 541
           + E  Q F + K     P    Y T++       +  RA+ IF+   K C          
Sbjct: 716 LAEAFQLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFETNEKGCASSSAPFNAL 775

Query: 542 ------------------------------PNAATYNIMIDCCSIIRCFKSASALVSMMV 571
                                         PN  TYNIMID        ++A  L   M 
Sbjct: 776 INWVFKFGKTELTTDMINRLMDGSFDKFGKPNDVTYNIMIDYLCKEGNLEAAKELFHHMQ 835

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
           +    P  +TYT+L+      G   E  ++ D V   GI  D ++Y+ I+    ++G   
Sbjct: 836 KANLMPTVITYTSLLNGYDKMGRRSEMFSVFDEVIAAGIEPDNIMYSVIINAFLKEGMTT 895

Query: 632 VIEFIIEQMHQNKVQPDP-----STCHFVFSGYVNCG 663
               +++QM       D      STC  + SG+   G
Sbjct: 896 KALVLLDQMFAKNAVDDGCKLSISTCRALLSGFAKVG 932



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 128/625 (20%), Positives = 247/625 (39%), Gaps = 100/625 (16%)

Query: 107 METWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIY-------------------- 146
           +E  + M  K +  + + Y L++  LCK   LE+A +L+                     
Sbjct: 265 LELKKSMSCKGLVPSRQSYNLLIDGLCKQKRLEDAKSLLVEMNSVGLFADNVAYSILIDG 324

Query: 147 ----------------FLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVG 190
                            +   + I P++  Y+ F+   +K  +M  A    D M +  V 
Sbjct: 325 LLKGRNADAANGLVHEMVSHGFSIDPMM--YDYFICVMSKEGAMEKAKALFDGMITFGVT 382

Query: 191 KNEVTYTELLKLAVWQKNLSAVHEIWEDYIK-HYSLSIFSLRKFVWSFTRLRDLKSAYET 249
                Y  L++    +KN+   +E+  +  K +  +S ++    V       DL  AY  
Sbjct: 383 PGARAYASLIEGFFREKNVRKGYELLVEIKKRNIVISPYTYGTAVKGMCSSGDLDGAYNI 442

Query: 250 LQHMVALAMMGKLYINRT-SEGRLRSSRLDIPIPLNALPVMKVLR--------WSFSDVI 300
           ++ M A      + I  T  +  L+ SR       +A+ V+K +R        + ++ +I
Sbjct: 443 VKEMGASGCRPNVVIYTTLIKTFLQKSRFG-----DAVRVLKEMREQGIAPDTFCYNSLI 497

Query: 301 HACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLK 360
               + +    A   +L+M   G +P + TY  FI   +      +  + +K M +  + 
Sbjct: 498 IGLSKAKKMDEARSFLLEMVENGFKPDAFTYGAFISGYIEAGEFASADKYVKEMLECGVI 557

Query: 361 PQDSTIATLSVE-CSKALELDLAEALLDQISR--CTNPKPFSAFLAACDTMDKPERAIKI 417
           P       L  E C K   ++   A    + +    + K ++  +       K   A +I
Sbjct: 558 PNKVLCTGLINEYCKKGKVIEACSAFRSMVEQGILGDAKTYTVLMNGLVKNGKVNDAEEI 617

Query: 418 FAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHS 476
           F +MR K + PD+ +Y  L              + FS++ + ++ ++I  +M +  +  +
Sbjct: 618 FHEMRGKGIAPDVFSYGTLI-------------DGFSKLGNMQKASSIFDEMVQAGLTSN 664

Query: 477 HISMKNLLKALGAEGMI---RELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFK 533
            I    LL      G I   +EL+        P    TY T++    ++ +   A ++F 
Sbjct: 665 VIIYNMLLGGFCRSGEIEKAKELLDEMSGKGFPPNAVTYCTIIDGYCKSGDLAEAFQLFD 724

Query: 534 QMKTCGIPPNAATYNIMID-CCSI------IRCFK-------SASALVSMMVRDGF-YPQ 578
           +MK  G+ P++  Y  ++D CC +      I  F+       S+SA  + ++   F + +
Sbjct: 725 EMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFETNEKGCASSSAPFNALINWVFKFGK 784

Query: 579 TMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIE 638
           T   T +I  L+D G FD+           G P+DV  YN ++   C++G ++  + +  
Sbjct: 785 TELTTDMINRLMD-GSFDKF----------GKPNDV-TYNIMIDYLCKEGNLEAAKELFH 832

Query: 639 QMHQNKVQPDPSTCHFVFSGYVNCG 663
            M +  + P   T   + +GY   G
Sbjct: 833 HMQKANLMPTVITYTSLLNGYDKMG 857



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 106/579 (18%), Positives = 226/579 (39%), Gaps = 48/579 (8%)

Query: 108 ETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYG-------------- 153
           + ++ M E+ +  + + Y +++ A C+ G ++ A +++    E  G              
Sbjct: 210 DVYKGMVERNVVFDVQSYEMLIGAHCRDGNVQLAKDVLLKTEEELGTATLNVDEALELKK 269

Query: 154 ------IYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQK 207
                 + P    YN  +    K   +  A   L  M+S  +  + V Y+ L+   +  +
Sbjct: 270 SMSCKGLVPSRQSYNLLIDGLCKQKRLEDAKSLLVEMNSVGLFADNVAYSILIDGLLKGR 329

Query: 208 NLSAVHEIWEDYIKH-YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMM-GKLYIN 265
           N  A + +  + + H +S+       F+   ++   ++ A      M+   +  G     
Sbjct: 330 NADAANGLVHEMVSHGFSIDPMMYDYFICVMSKEGAMEKAKALFDGMITFGVTPGARAYA 389

Query: 266 RTSEGRLRSSRL----DIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQS 321
              EG  R   +    ++ + +    ++ +  +++   +     + +   A  ++ +M +
Sbjct: 390 SLIEGFFREKNVRKGYELLVEIKKRNIV-ISPYTYGTAVKGMCSSGDLDGAYNIVKEMGA 448

Query: 322 LGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDL 381
            G +P+   Y   I+  +      + + VLK M++  + P      +L +  SKA ++D 
Sbjct: 449 SGCRPNVVIYTTLIKTFLQKSRFGDAVRVLKEMREQGIAPDTFCYNSLIIGLSKAKKMDE 508

Query: 382 AEA-LLDQISRCTNPKPFS--AFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSL 438
           A + LL+ +     P  F+  AF++      +   A K   +M   L   +   ++L + 
Sbjct: 509 ARSFLLEMVENGFKPDAFTYGAFISGYIEAGEFASADKYVKEM---LECGVIPNKVLCT- 564

Query: 439 FGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQ 498
            G +N   ++G +     + +        M    I     +   L+  L   G + +  +
Sbjct: 565 -GLINEYCKKGKVIEACSAFR-------SMVEQGILGDAKTYTVLMNGLVKNGKVNDAEE 616

Query: 499 YFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCS 555
            F + +     P   +Y T++    +     +A  IF +M   G+  N   YN+++    
Sbjct: 617 IFHEMRGKGIAPDVFSYGTLIDGFSKLGNMQKASSIFDEMVQAGLTSNVIIYNMLLGGFC 676

Query: 556 IIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVL 615
                + A  L+  M   GF P  +TY  +I      GD  EA  L D + L+G+  D  
Sbjct: 677 RSGEIEKAKELLDEMSGKGFPPNAVTYCTIIDGYCKSGDLAEAFQLFDEMKLKGLVPDSF 736

Query: 616 LYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHF 654
           +Y T++   C   R++ +E  I     N+     S+  F
Sbjct: 737 VYTTLVDGCC---RLNDVERAITIFETNEKGCASSSAPF 772



 Score = 72.8 bits (177), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 85/394 (21%), Positives = 153/394 (38%), Gaps = 36/394 (9%)

Query: 306 TQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDST 365
           T N   A +L   M   GL PS  +Y+  I  +   + L +   +L  M    L   +  
Sbjct: 258 TLNVDEALELKKSMSCKGLVPSRQSYNLLIDGLCKQKRLEDAKSLLVEMNSVGLFADNVA 317

Query: 366 IATLSVECSKALELDLAEALLDQI---SRCTNPKPFSAFLAACDTMDKPERAIKIFAKMR 422
            + L     K    D A  L+ ++       +P  +  F+         E+A  +F  M 
Sbjct: 318 YSILIDGLLKGRNADAANGLVHEMVSHGFSIDPMMYDYFICVMSKEGAMEKAKALFDGMI 377

Query: 423 Q-KLRPDIRTYELLFSLF---GNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHI 478
              + P  R Y  L   F    NV   YE                + +++ + NI  S  
Sbjct: 378 TFGVTPGARAYASLIEGFFREKNVRKGYE----------------LLVEIKKRNIVISPY 421

Query: 479 SMKNLLKAL-------GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEI 531
           +    +K +       GA  +++E+    C     +    Y T++ + ++      A+ +
Sbjct: 422 TYGTAVKGMCSSGDLDGAYNIVKEMGASGCRPNVVI----YTTLIKTFLQKSRFGDAVRV 477

Query: 532 FKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLD 591
            K+M+  GI P+   YN +I   S  +    A + +  MV +GF P   TY A I   ++
Sbjct: 478 LKEMREQGIAPDTFCYNSLIIGLSKAKKMDEARSFLLEMVENGFKPDAFTYGAFISGYIE 537

Query: 592 YGDFDEALNLL-DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650
            G+F  A   + +++    IP+ VL    ++ + C+KG++         M +  +  D  
Sbjct: 538 AGEFASADKYVKEMLECGVIPNKVLC-TGLINEYCKKGKVIEACSAFRSMVEQGILGDAK 596

Query: 651 TCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEV 684
           T   + +G V  G  N A E    +  + +  +V
Sbjct: 597 TYTVLMNGLVKNGKVNDAEEIFHEMRGKGIAPDV 630



 Score = 62.4 bits (150), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 77/372 (20%), Positives = 142/372 (38%), Gaps = 51/372 (13%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A+ L   M + G+ P +  Y   I     ++ +R G E+L  +++ N+     T  T   
Sbjct: 369 AKALFDGMITFGVTPGARAYASLIEGFFREKNVRKGYELLVEIKKRNIVISPYTYGTAVK 428

Query: 372 ECSKALELDLAEALLDQI--SRC-TNPKPFSAFLAACDTMDKPERAIKIFAKMR-QKLRP 427
               + +LD A  ++ ++  S C  N   ++  +       +   A+++  +MR Q + P
Sbjct: 429 GMCSSGDLDGAYNIVKEMGASGCRPNVVIYTTLIKTFLQKSRFGDAVRVLKEMREQGIAP 488

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL 487
           D   Y  L  + G   A         ++D A+   +  ++M  N  +             
Sbjct: 489 DTFCYNSL--IIGLSKA--------KKMDEAR---SFLLEMVENGFKPDAF--------- 526

Query: 488 GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATY 547
                                  TY   +   +EA E   A +  K+M  CG+ PN    
Sbjct: 527 -----------------------TYGAFISGYIEAGEFASADKYVKEMLECGVIPNKVLC 563

Query: 548 NIMI-DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVS 606
             +I + C   +  ++ SA  SM V  G      TYT L+  L+  G  ++A  +   + 
Sbjct: 564 TGLINEYCKKGKVIEACSAFRSM-VEQGILGDAKTYTVLMNGLVKNGKVNDAEEIFHEMR 622

Query: 607 LEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHN 666
            +GI  DV  Y T++    + G +     I ++M Q  +  +    + +  G+   G   
Sbjct: 623 GKGIAPDVFSYGTLIDGFSKLGNMQKASSIFDEMVQAGLTSNVIIYNMLLGGFCRSGEIE 682

Query: 667 SAMEALQVLSMR 678
            A E L  +S +
Sbjct: 683 KAKELLDEMSGK 694



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 108/566 (19%), Positives = 216/566 (38%), Gaps = 48/566 (8%)

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
           ++++ I ++   Y   ++ +C  G L+ A N++  +G   G  P + +Y + +    +  
Sbjct: 411 IKKRNIVISPYTYGTAVKGMCSSGDLDGAYNIVKEMGAS-GCRPNVVIYTTLIKTFLQKS 469

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELL-KLAVWQKNLSAVHEIWEDYIKHYSLSIFSLR 231
               A   L  M  + +  +   Y  L+  L+  +K   A   + E     +    F+  
Sbjct: 470 RFGDAVRVLKEMREQGIAPDTFCYNSLIIGLSKAKKMDEARSFLLEMVENGFKPDAFTYG 529

Query: 232 KFVWSFTRLRDLKSAYETLQHMVALAMMGK--LYINRTSEGRLRSSRLDIPIPLNALPVM 289
            F+  +    +  SA + ++ M+   ++    L     +E   +   ++      ++   
Sbjct: 530 AFISGYIEAGEFASADKYVKEMLECGVIPNKVLCTGLINEYCKKGKVIEACSAFRSMVEQ 589

Query: 290 KVLRWSFSDVIHACGRTQNSGL--AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNG 347
            +L  + +  +   G  +N  +  AE++  +M+  G+ P   +Y   I        ++  
Sbjct: 590 GILGDAKTYTVLMNGLVKNGKVNDAEEIFHEMRGKGIAPDVFSYGTLIDGFSKLGNMQKA 649

Query: 348 MEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFL----A 403
             +   M Q  L         L     ++ E++ A+ LLD++S    P     +      
Sbjct: 650 SSIFDEMVQAGLTSNVIIYNMLLGGFCRSGEIEKAKELLDEMSGKGFPPNAVTYCTIIDG 709

Query: 404 ACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRIN 462
            C + D  E A ++F +M+ K L PD   Y  L                   VD   R+N
Sbjct: 710 YCKSGDLAE-AFQLFDEMKLKGLVPDSFVYTTL-------------------VDGCCRLN 749

Query: 463 AIE--MDMARNNIQHSHIS------MKNLLKALGAEGMIRELIQYFCD-SKTPLGTP--- 510
            +E  + +   N +    S      + N +   G   +  ++I    D S    G P   
Sbjct: 750 DVERAITIFETNEKGCASSSAPFNALINWVFKFGKTELTTDMINRLMDGSFDKFGKPNDV 809

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TYN ++  L +      A E+F  M+   + P   TY  +++    +       ++   +
Sbjct: 810 TYNIMIDYLCKEGNLEAAKELFHHMQKANLMPTVITYTSLLNGYDKMGRRSEMFSVFDEV 869

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSL-----EGIPHDVLLYNTILKKAC 625
           +  G  P  + Y+ +I   L  G   +AL LLD +       +G    +     +L    
Sbjct: 870 IAAGIEPDNIMYSVIINAFLKEGMTTKALVLLDQMFAKNAVDDGCKLSISTCRALLSGFA 929

Query: 626 EKGRIDVIEFIIEQMHQNKVQPDPST 651
           + G ++V E ++E M + K  PD ST
Sbjct: 930 KVGEMEVAEKVVENMVRLKYIPDSST 955



 Score = 43.9 bits (102), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 41/192 (21%), Positives = 79/192 (41%), Gaps = 11/192 (5%)

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHR 527
           M   N+     S + L+ A   +G ++        ++  LGT T N              
Sbjct: 215 MVERNVVFDVQSYEMLIGAHCRDGNVQLAKDVLLKTEEELGTATLNV-----------DE 263

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A+E+ K M   G+ P+  +YN++ID     +  + A +L+  M   G +   + Y+ LI 
Sbjct: 264 ALELKKSMSCKGLVPSRQSYNLLIDGLCKQKRLEDAKSLLVEMNSVGLFADNVAYSILID 323

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
            LL   + D A  L+  +   G   D ++Y+  +    ++G ++  + + + M    V P
Sbjct: 324 GLLKGRNADAANGLVHEMVSHGFSIDPMMYDYFICVMSKEGAMEKAKALFDGMITFGVTP 383

Query: 648 DPSTCHFVFSGY 659
                  +  G+
Sbjct: 384 GARAYASLIEGF 395


>gi|297721877|ref|NP_001173302.1| Os03g0201300 [Oryza sativa Japonica Group]
 gi|108706707|gb|ABF94502.1| salt-inducible protein, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255674288|dbj|BAH92030.1| Os03g0201300 [Oryza sativa Japonica Group]
          Length = 796

 Score = 85.9 bits (211), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 93/449 (20%), Positives = 172/449 (38%), Gaps = 69/449 (15%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ +++A  R    G A  L+ +M+  G+ P+  TY+  + A      ++   +V++ M
Sbjct: 245 TYNTLLNAHCRKGMLGEARALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESM 304

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDK 410
                +P   T   L+V   +A ++D A  L D++ R +   P    ++  + AC     
Sbjct: 305 TAYGFEPDLRTYNVLAVGLCQAGKVDEAFRLKDEMERLSTALPDVVTYNTLVDACFKWRC 364

Query: 411 PERAIKIFAKMRQK------------------------------------LRPDIRTYEL 434
              A+++  +MR K                                    L PD+ TY  
Sbjct: 365 SSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNT 424

Query: 435 LFSLF---GNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNI--QHSHISMKNLLKALGA 489
           L   +   GNV   +    M   V    +++   ++    N+     +   + LL +   
Sbjct: 425 LIDAYCKAGNVAKAFTL--MDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQ 482

Query: 490 EGMIRELIQY----------------------FCDSKTPLGTPTYNTVLHSLVEAQESHR 527
            G + + + Y                        + K      TYNT++  L   +    
Sbjct: 483 RGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNTLIKGLCRMERLKE 542

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A++   ++   G+ P+  TYNI+I         ++A    + MV + F P  +T   L+ 
Sbjct: 543 AIDKLNELVEKGLVPDETTYNIIIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMN 602

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
            L  +G  D+AL L +    +G   DV+ YNT+++  C+ G +D      + M    +QP
Sbjct: 603 GLCLHGKLDKALKLFESWVEKGKKVDVITYNTLIQSMCKVGDVDTALHFFDDMEVKGLQP 662

Query: 648 DPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
           D  T + V S     G    A   L  L+
Sbjct: 663 DAFTYNVVLSALSEAGRSEEAHNMLHKLA 691



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 70/267 (26%), Positives = 115/267 (43%), Gaps = 20/267 (7%)

Query: 425 LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLL 484
           L PD  TY  L       NA   +G M  +        A+   M R+ I  +  +   L+
Sbjct: 239 LSPDAVTYNTLL------NAHCRKG-MLGEA------RALLARMKRDGIAPTQPTYNTLV 285

Query: 485 KALGAEGMIRELIQYFCDSKTPLG-TP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGI 540
            A    G I++  +   +S T  G  P   TYN +   L +A +   A  +  +M+    
Sbjct: 286 SAFARLGWIKQATK-VVESMTAYGFEPDLRTYNVLAVGLCQAGKVDEAFRLKDEMERLST 344

Query: 541 P-PNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEAL 599
             P+  TYN ++D C   RC   A  L+  M   G  P  +T+  ++K L   G  +EAL
Sbjct: 345 ALPDVVTYNTLVDACFKWRCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEAL 404

Query: 600 NLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
             L+ ++ EG+  DV+ YNT++   C+ G +     ++++M    ++ D  T + V    
Sbjct: 405 GKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKGLKMDTFTLNTVLYNL 464

Query: 660 VNCGFHNSAMEALQVLSMR-MLCEEVS 685
                +  A E L     R  + +EVS
Sbjct: 465 CKMKRYEDAEELLHSPPQRGFVPDEVS 491



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 81/371 (21%), Positives = 148/371 (39%), Gaps = 52/371 (14%)

Query: 322 LGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL-SVECSKALELD 380
           L L P+ +T++  +    S   L + +  L  MQ   L P   T  TL +  C K + L 
Sbjct: 202 LRLHPNHYTFNLLVHTHCSKGTLADALATLSTMQGFGLSPDAVTYNTLLNAHCRKGM-LG 260

Query: 381 LAEALLDQISR----CTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELL 435
            A ALL ++ R     T P  ++  ++A   +   ++A K+   M      PD+RTY +L
Sbjct: 261 EARALLARMKRDGIAPTQPT-YNTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVL 319

Query: 436 FSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRE 495
               G   A         +VD A R+        ++ ++    ++ +++           
Sbjct: 320 --AVGLCQA--------GKVDEAFRL--------KDEMERLSTALPDVV----------- 350

Query: 496 LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCS 555
                          TYNT++ +  + + S  A+ + ++M+  G+ P   T+NI++    
Sbjct: 351 ---------------TYNTLVDACFKWRCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLC 395

Query: 556 IIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVL 615
                + A   +  +  +G  P  +TY  LI      G+  +A  L+D +  +G+  D  
Sbjct: 396 KEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKGLKMDTF 455

Query: 616 LYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
             NT+L   C+  R +  E ++    Q    PD  +   V + Y        A+     +
Sbjct: 456 TLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQM 515

Query: 676 SMRMLCEEVST 686
             R L   +ST
Sbjct: 516 IERKLIPSIST 526



 Score = 65.9 bits (159), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 118/558 (21%), Positives = 226/558 (40%), Gaps = 42/558 (7%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y  ++ A C+ G L EA  L+  + +R GI P  P YN+ + A A+L  +  A   ++ M
Sbjct: 246 YNTLLNAHCRKGMLGEARALLARM-KRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESM 304

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIW--EDYIKHYSLS---IFSLRKFVWSFTR 239
            +     +  TY     LAV       V E +  +D ++  S +   + +    V +  +
Sbjct: 305 TAYGFEPDLRTYN---VLAVGLCQAGKVDEAFRLKDEMERLSTALPDVVTYNTLVDACFK 361

Query: 240 LRDLKSAYETLQHMVALAMMGKLYINRT------SEGRLRSS--RLDIPIPLNALPVMKV 291
            R    A   L+ M    +   L  +         EG+L  +  +L+        P +  
Sbjct: 362 WRCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDV-- 419

Query: 292 LRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVL 351
              +++ +I A  +  N   A  LM +M   GL+  + T +  +  +   +   +  E+L
Sbjct: 420 --ITYNTLIDAYCKAGNVAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELL 477

Query: 352 KIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPK--PFSAFLAACDTM 408
               Q    P + +  T+     K    + A  L DQ I R   P    ++  +     M
Sbjct: 478 HSPPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNTLIKGLCRM 537

Query: 409 DKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMD 467
           ++ + AI    ++ +K L PD  TY ++      ++A  +EG++    ++A R +     
Sbjct: 538 ERLKEAIDKLNELVEKGLVPDETTYNII------IHAYCKEGDL----ENAFRFHN---K 584

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRELIQYF---CDSKTPLGTPTYNTVLHSLVEAQE 524
           M  N+ +   ++   L+  L   G + + ++ F    +    +   TYNT++ S+ +  +
Sbjct: 585 MVENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESWVEKGKKVDVITYNTLIQSMCKVGD 644

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
              A+  F  M+  G+ P+A TYN+++   S     + A  ++  +   G   Q+     
Sbjct: 645 VDTALHFFDDMEVKGLQPDAFTYNVVLSALSEAGRSEEAHNMLHKLADSGKLSQSFACPL 704

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVL-LYNTILKKACEKGRIDVIEFIIEQMHQN 643
           L     D  D  E     +  S E    + L  Y   L   C  G++   + ++++M Q 
Sbjct: 705 LKPSSADEADVKEHEGKPEAESSEKAQDNALETYMERLNGLCTGGQLKEAKAVLDEMMQK 764

Query: 644 KVQPDPSTCHFVFSGYVN 661
            +  D ST   +  G + 
Sbjct: 765 GMPVDSSTYITLMEGLIK 782



 Score = 40.4 bits (93), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 104/526 (19%), Positives = 192/526 (36%), Gaps = 87/526 (16%)

Query: 123 KCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLD 182
           + Y ++   LC+ G ++EA  L   +       P +  YN+ + AC K      A   L+
Sbjct: 314 RTYNVLAVGLCQAGKVDEAFRLKDEMERLSTALPDVVTYNTLVDACFKWRCSSDALRLLE 373

Query: 183 LMDSRMVGKNEVTYT----ELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFT 238
            M  + V    VT+      L K    ++ L  + +I E+ +   +  + +    + ++ 
Sbjct: 374 EMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGL---APDVITYNTLIDAYC 430

Query: 239 RLRDLKSAYETLQHMVALAM-MGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVL---RW 294
           +  ++  A+  +  MV   + M    +N       +  R +    L   P  +       
Sbjct: 431 KAGNVAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEV 490

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           S+  V+ A  +  N   A +L  QM    L PS  TY+  I+ +     L+  ++ L  +
Sbjct: 491 SYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNEL 550

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERA 414
            +  L P ++T   +                                 A C   D  E A
Sbjct: 551 VEKGLVPDETTYNII-------------------------------IHAYCKEGDL-ENA 578

Query: 415 IKIFAKM-RQKLRPDIRTYELLFS---LFGNVNAPYEEGNMF-SQVDSAKRINAIEMDMA 469
            +   KM     +PD+ T   L +   L G ++   +   +F S V+  K+++       
Sbjct: 579 FRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKALK---LFESWVEKGKKVDV------ 629

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESH 526
                   I+   L++++   G +   + +F D +     P   TYN VL +L EA  S 
Sbjct: 630 --------ITYNTLIQSMCKVGDVDTALHFFDDMEVKGLQPDAFTYNVVLSALSEAGRSE 681

Query: 527 RAMEIFKQMKTCG----------IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFY 576
            A  +  ++   G          + P++A      D   +        A  S   +D   
Sbjct: 682 EAHNMLHKLADSGKLSQSFACPLLKPSSA------DEADVKEHEGKPEAESSEKAQDN-- 733

Query: 577 PQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILK 622
               TY   +  L   G   EA  +LD +  +G+P D   Y T+++
Sbjct: 734 -ALETYMERLNGLCTGGQLKEAKAVLDEMMQKGMPVDSSTYITLME 778


>gi|115469638|ref|NP_001058418.1| Os06g0690900 [Oryza sativa Japonica Group]
 gi|52076717|dbj|BAD45630.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|53793285|dbj|BAD54507.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113596458|dbj|BAF20332.1| Os06g0690900 [Oryza sativa Japonica Group]
          Length = 991

 Score = 85.9 bits (211), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 121/582 (20%), Positives = 219/582 (37%), Gaps = 91/582 (15%)

Query: 97  CARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYP 156
           C R    LF+M     M+      N + +  ++  LCK G + +A  L++    + G+ P
Sbjct: 268 CVRKALVLFLM-----MKRDGCSPNVRAFTFLISGLCKSGRVGDA-RLLFDAMPQNGVVP 321

Query: 157 ILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIW 216
            +  YN+ +   +KL  M  A    +LM+      ++ TY  L+     QK   A  E+ 
Sbjct: 322 SVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLCDQKTEEA-EELL 380

Query: 217 EDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSR 276
            + +K            V +FT L +     E      AL M  K+  ++         +
Sbjct: 381 NNAVKE------GFTPTVVTFTNLINGYCMAEKFDD--ALRMKNKMMSSK--------CK 424

Query: 277 LDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIR 336
           LD+ +              F  +I++  +      A++L+ ++ + GL P+  TY   I 
Sbjct: 425 LDLQV--------------FGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIID 470

Query: 337 AIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR---CT 393
                  +   +EVLK+M+++  +P   T  +L     K  +L  A ALL ++ +     
Sbjct: 471 GYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIP 530

Query: 394 NPKPFSAFLAA-CDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNM 451
           N   ++  L   CD  D  + A ++F  M Q  L+PD   Y +                 
Sbjct: 531 NVITYTTLLQGQCDEHDF-DNAFRLFEMMEQNGLKPDEHAYAV----------------- 572

Query: 452 FSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPT 511
                                          L  AL   G   E   +       L    
Sbjct: 573 -------------------------------LTDALCKAGRAEEAYSFIVRKGVALTKVY 601

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           Y T++    +A  +  A  + ++M   G  P++ TY++++      +    A  ++  M 
Sbjct: 602 YTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMS 661

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
             G       YT LI  +L  G  D A  + + ++  G       Y   +   C++GR++
Sbjct: 662 LRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLE 721

Query: 632 VIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
             E +I +M +  V PD  T + +  G  + G+ + A   L+
Sbjct: 722 DAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLK 763



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 116/529 (21%), Positives = 215/529 (40%), Gaps = 66/529 (12%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y  ++   CK G ++ A  ++  + ER G  P    YNS +    K   +  A   L  M
Sbjct: 465 YTSIIDGYCKSGKVDIALEVLKMM-ERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKM 523

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLK 244
               +  N +TYT LL+    + +      ++E                +     L+  +
Sbjct: 524 QKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFE----------------MMEQNGLKPDE 567

Query: 245 SAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACG 304
            AY  L    AL   G            R+      I    + + KV    ++ +I    
Sbjct: 568 HAYAVLTD--ALCKAG------------RAEEAYSFIVRKGVALTKVY---YTTLIDGFS 610

Query: 305 RTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDS 364
           +  N+  A  L+ +M   G  P S+TY   + A+   + L    E L I+ Q +L+    
Sbjct: 611 KAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLN---EALPILDQMSLRGIKC 667

Query: 365 TIATLSVECSKAL---ELDLAEALLDQISRCTNPKP----FSAFLAACDTMDKPERAIKI 417
           TI   ++   + L   + D A+ + ++++  +  KP    ++ F+ +     + E A  +
Sbjct: 668 TIFAYTILIDEMLREGKHDHAKRMYNEMTS-SGHKPSATTYTVFINSYCKEGRLEDAEDL 726

Query: 418 FAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI--NAIEMDMARNNIQ 474
             KM R+ + PD+ TY +L    G++      G +     + KR+   + E +     + 
Sbjct: 727 ILKMEREGVAPDVVTYNILIDGCGHM------GYIDRAFSTLKRMVGASCEPNYWTYCLL 780

Query: 475 HSHISMKNL--LKALGAEGMIR--------ELIQYFCDSKTPLGTPTYNTVLHSLVEAQE 524
             H+   NL  ++++   GM          +L++            TY++++    +A  
Sbjct: 781 LKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLERMVKHGLNPTVTTYSSLIAGFCKAGR 840

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
              A  +   M   G+ PN   Y ++I CC   + F+ A + VS+M   GF PQ  +Y  
Sbjct: 841 LEEACLLLDHMCGKGLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMSECGFQPQLESYRL 900

Query: 585 LIKILLDYGDFDEALNLL-DLVSLEGIPHDVLLYNTILKKACEKGRIDV 632
           L+  L + GDF++  +L  DL+ L G  HD + +  +     + G +D+
Sbjct: 901 LVVGLCNEGDFEKVKSLFCDLLEL-GYNHDEVAWKILNDGLLKAGYVDI 948



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 83/391 (21%), Positives = 160/391 (40%), Gaps = 24/391 (6%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +F+ +I    ++   G A  L   M   G+ PS  TY+  I        + + +++ ++M
Sbjct: 290 AFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELM 349

Query: 355 QQNNLKPQDSTIATLSVE-CSKALELDLAEALLDQISRCTNPK--PFSAFLAACDTMDKP 411
           ++N   P D T  TL    C +  E +  E L + +     P    F+  +      +K 
Sbjct: 350 EKNGCHPDDWTYNTLIYGLCDQKTE-EAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKF 408

Query: 412 ERAIKIFAK-MRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           + A+++  K M  K + D++ +  L              N   + D  K    +  +++ 
Sbjct: 409 DDALRMKNKMMSSKCKLDLQVFGKLI-------------NSLIKKDRLKEAKELLNEISA 455

Query: 471 NNIQHSHISMKNLLKALGAEGMIR---ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHR 527
           N +  + I+  +++      G +    E+++            TYN++++ LV+ ++ H+
Sbjct: 456 NGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHK 515

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           AM +  +M+  GI PN  TY  ++        F +A  L  MM ++G  P    Y  L  
Sbjct: 516 AMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTD 575

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
            L   G  +EA +    +  +G+    + Y T++    + G  D    +IE+M      P
Sbjct: 576 ALCKAGRAEEAYS---FIVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTP 632

Query: 648 DPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678
           D  T   +          N A+  L  +S+R
Sbjct: 633 DSYTYSVLLHALCKQKRLNEALPILDQMSLR 663



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 70/353 (19%), Positives = 142/353 (40%), Gaps = 27/353 (7%)

Query: 318 QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKAL 377
           Q+   GL P + TY+  I++   +  L       +++ +  L+P+  T   L +   +  
Sbjct: 173 QLVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRYFRLLLEGGLEPETFTCNALVLGYCRTG 232

Query: 378 ELDLA--EALLDQISRCT-NPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYE 433
           EL  A    L+  +  C  N   ++  +          +A+ +F  M R    P++R + 
Sbjct: 233 ELRKACWLFLMMPLMGCQRNEYSYTILIQGLCDAKCVRKALVLFLMMKRDGCSPNVRAFT 292

Query: 434 LLFSLF------GNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL 487
            L S        G+    ++       V S    NA+ +  ++    +  + +K L++  
Sbjct: 293 FLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKN 352

Query: 488 GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATY 547
           G                      TYNT+++ L + Q++  A E+       G  P   T+
Sbjct: 353 GCHP----------------DDWTYNTLIYGLCD-QKTEEAEELLNNAVKEGFTPTVVTF 395

Query: 548 NIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSL 607
             +I+   +   F  A  + + M+          +  LI  L+      EA  LL+ +S 
Sbjct: 396 TNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISA 455

Query: 608 EGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYV 660
            G+  +V+ Y +I+   C+ G++D+   +++ M ++  QP+  T + +  G V
Sbjct: 456 NGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLV 508



 Score = 62.8 bits (151), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 87/210 (41%), Gaps = 3/210 (1%)

Query: 452 FSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYF---CDSKTPLG 508
            ++ D  + +  +   + ++ +    ++   ++K+   EG +    +YF    +      
Sbjct: 158 LARFDMTEYMGRVYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRYFRLLLEGGLEPE 217

Query: 509 TPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVS 568
           T T N ++       E  +A  +F  M   G   N  +Y I+I      +C + A  L  
Sbjct: 218 TFTCNALVLGYCRTGELRKACWLFLMMPLMGCQRNEYSYTILIQGLCDAKCVRKALVLFL 277

Query: 569 MMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
           MM RDG  P    +T LI  L   G   +A  L D +   G+   V+ YN ++    + G
Sbjct: 278 MMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLG 337

Query: 629 RIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
           R++    I E M +N   PD  T + +  G
Sbjct: 338 RMNDALKIKELMEKNGCHPDDWTYNTLIYG 367



 Score = 56.2 bits (134), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 67/285 (23%), Positives = 118/285 (41%), Gaps = 17/285 (5%)

Query: 407 TMDKPERAIKIFAKM--RQKLRPDIRTYELLFSLFGNVNAP--YEE--GNMFSQVDSAK- 459
           T  +P  A+  F  +  R   R    ++  L  L     AP  YE    +M +  D+A+ 
Sbjct: 66  TAPEPATALAFFEWLARRDGFRHTADSHAALLHLLSRRRAPAQYERLVVSMLNCSDTAED 125

Query: 460 -RINAIEMDMARN--------NIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP 510
            R++A  +   R         + +  + ++++L +    E M R   Q   D   P  T 
Sbjct: 126 MRVSADAIQAIRRTGSARLALSPKCYNFALRSLARFDMTEYMGRVYSQLVQDGLLP-DTV 184

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TYNT++ S  +  +   A   F+ +   G+ P   T N ++         + A  L  MM
Sbjct: 185 TYNTMIKSYCKEGDLTTAHRYFRLLLEGGLEPETFTCNALVLGYCRTGELRKACWLFLMM 244

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
              G      +YT LI+ L D     +AL L  ++  +G   +V  +  ++   C+ GR+
Sbjct: 245 PLMGCQRNEYSYTILIQGLCDAKCVRKALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRV 304

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
                + + M QN V P   T + +  GY   G  N A++  +++
Sbjct: 305 GDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELM 349



 Score = 43.1 bits (100), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 85/412 (20%), Positives = 158/412 (38%), Gaps = 48/412 (11%)

Query: 110 WRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACA 169
           + MME+  +  +   Y ++  ALCK G  EEA + I     R G+      Y + +   +
Sbjct: 555 FEMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYSFIV----RKGVALTKVYYTTLIDGFS 610

Query: 170 KLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDY-IKHYSLSIF 228
           K  +   A   ++ M       +  TY+ LL     QK L+    I +   ++    +IF
Sbjct: 611 KAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIF 670

Query: 229 SLRKFVWSFTRLRDLKSAYETLQHMVA-----LAMMGKLYINR-TSEGRLRSSRLDIPIP 282
           +    +    R      A      M +      A    ++IN    EGRL  +  D+ + 
Sbjct: 671 AYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAE-DLILK 729

Query: 283 LNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYD---------- 332
           +    V   +  +++ +I  CG       A   + +M     +P+  TY           
Sbjct: 730 MEREGVAPDVV-TYNILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLKHLLKGN 788

Query: 333 -GFIRAIVSDRGLRNGME------VLKIMQQNNLKPQDSTIATLSVECSKALELDLAEAL 385
             ++R+ V   G+ N +E      +L+ M ++ L P  +T ++L     KA  L+ A  L
Sbjct: 789 LAYVRS-VDTSGMWNLIELDITWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLL 847

Query: 386 LDQI---SRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGN 441
           LD +       N   ++  +  C      E+A+   + M +   +P + +Y LL     N
Sbjct: 848 LDHMCGKGLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMSECGFQPQLESYRLLVVGLCN 907

Query: 442 VNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMI 493
                 EG+        +++ ++  D+      H  ++ K L   L   G +
Sbjct: 908 ------EGDF-------EKVKSLFCDLLELGYNHDEVAWKILNDGLLKAGYV 946


>gi|302768008|ref|XP_002967424.1| hypothetical protein SELMODRAFT_231012 [Selaginella moellendorffii]
 gi|300165415|gb|EFJ32023.1| hypothetical protein SELMODRAFT_231012 [Selaginella moellendorffii]
          Length = 546

 Score = 85.9 bits (211), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 81/364 (22%), Positives = 154/364 (42%), Gaps = 24/364 (6%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           ++++ V+    R +   LAE L+L+M    L P   T+   I        L + M  L+ 
Sbjct: 26  FAYNVVLKNVLRARQWELAEGLVLEMVEKDLVPDKFTFSTLISGYGRANRLEDAMGWLQE 85

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMD 409
           M+   +KP     +TL     K  +   A +L  ++ + +   P    +++ +       
Sbjct: 86  MEAGGIKPDLVIFSTLIELAGKVKDYSKATSLFSKL-KASGIAPDKVIYNSMINLYGKAK 144

Query: 410 KPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
             + A  + A+M++  L PD  +Y +L + +       E   +F ++    +   I++D+
Sbjct: 145 FYKEAQGLLAEMKEAGLMPDTVSYTILINAYAESQKYLEAKQVFLEM----KTKGIQLDV 200

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP----TYNTVLHSLVEAQE 524
              N+         ++   G   M+R+  + F      LG      TYNT++    EA+ 
Sbjct: 201 TTCNM---------MIDVYGKLEMVRDAEELFWSMSKTLGIQQNVVTYNTMIKVYKEAEL 251

Query: 525 SHRAMEIFKQMKT-CGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
              A  +F  M+   G+ PN  TYN ++    +    + A  LV  M + G  P  +TY+
Sbjct: 252 LSEAFNVFYYMQNKGGVEPNVITYNTILFLHGLTLQHEKAMRLVRKMQQRGIEPNAVTYS 311

Query: 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
            LI I    G +D A  L   +  +G   D +LY +++      G +   + ++E++ Q 
Sbjct: 312 TLISIYGKTGKYDRAAFLFKTLREKGFEMDEILYQSMIVVYERAGLVAHAKRLLEELKQP 371

Query: 644 KVQP 647
            + P
Sbjct: 372 DIVP 375



 Score = 47.0 bits (110), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 72/332 (21%), Positives = 144/332 (43%), Gaps = 25/332 (7%)

Query: 299 VIHACGRTQNSGLAEQLMLQM-QSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ-Q 356
           +I   G+ +    AE+L   M ++LG+Q +  TY+  I+       L     V   MQ +
Sbjct: 206 MIDVYGKLEMVRDAEELFWSMSKTLGIQQNVVTYNTMIKVYKEAELLSEAFNVFYYMQNK 265

Query: 357 NNLKPQDSTIAT------LSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDK 410
             ++P   T  T      L+++  KA+ L      + Q     N   +S  ++      K
Sbjct: 266 GGVEPNVITYNTILFLHGLTLQHEKAMRLVRK---MQQRGIEPNAVTYSTLISIYGKTGK 322

Query: 411 PERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
            +RA  +F  +R+K       +E+   L+ ++   YE   +   V  AKR+  +E ++ +
Sbjct: 323 YDRAAFLFKTLREK------GFEMDEILYQSMIVVYERAGL---VAHAKRL--LE-ELKQ 370

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAME 530
            +I     ++  L KA   E   + L     ++     + TY +++   +  + S  A++
Sbjct: 371 PDIVPRDTAISILAKAEKLEEAAK-LYWRSHEAGEIKESVTYKSMIQLFMRNKRSKNAID 429

Query: 531 IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590
           +F+ M+  G  P++ T  +++     +R  + A  L   M   G   +   +  ++K+  
Sbjct: 430 VFENMRESGFLPDSETTVVLLAAYGQLRQLEDAEKLYLDMRERGCTLEKEVHFQMLKLYG 489

Query: 591 DYGDFDEALNLLDLVSLEGIPHDVLLYNTILK 622
           D     EA ++   + LEG+  D  LY T+++
Sbjct: 490 DARKIREAEDMFAALKLEGLDGDE-LYLTMIR 520


>gi|302795346|ref|XP_002979436.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
 gi|300152684|gb|EFJ19325.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
          Length = 500

 Score = 85.9 bits (211), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 87/367 (23%), Positives = 155/367 (42%), Gaps = 30/367 (8%)

Query: 318 QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKAL 377
           +M S G  P  +TY   I A+  +  L    + L+ M   NL P   T   L     K  
Sbjct: 36  KMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGG 95

Query: 378 ELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLR----PDIRTYE 433
            +D A ALL ++ +   P   + + +    + K ERA + +  + + +     PDI TY 
Sbjct: 96  RVDEAVALLSKMRKKCVPTAVT-YNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYT 154

Query: 434 LLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMI 493
            L + F       +   +F Q+            +AR   +   ++   L+  L  EG +
Sbjct: 155 TLITGFCKSKKSDDALRVFEQL------------VARG-FRPDVVTYSCLIDGLCKEGRL 201

Query: 494 RELIQYF-----CDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYN 548
           +E I  F       S  P  T TYN+++       +   AM + ++M   G  P+  TY 
Sbjct: 202 KEAIDLFGRMIKSGSCMP-NTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYT 260

Query: 549 IMIDC-CSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSL 607
            +++  C + R    A  L++ M R G  P  +T+T+L+  L       +A+++L  +  
Sbjct: 261 TLMNGFCKLAR-LDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRR 319

Query: 608 EGIPHDVLLYNTILKKACEKGRI-DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHN 666
           +     V  YNTIL   C   ++ +  +F++E+M      P+  + + +  G       +
Sbjct: 320 KSCSPTVYTYNTILDGYCRANQLEEARKFMLEEMD---CPPNVVSFNIMIRGLCKVNRSS 376

Query: 667 SAMEALQ 673
            AME ++
Sbjct: 377 EAMELVE 383



 Score = 72.4 bits (176), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 67/283 (23%), Positives = 119/283 (42%), Gaps = 23/283 (8%)

Query: 412 ERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           E+A+    KM  K   PD+ TY  +       N  +E      +             MA 
Sbjct: 28  EQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEE-------------MAN 74

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCD--SKTPLGTPTYNTVLHSLVEAQESHRA 528
            N+  + ++   L+  L   G + E +        K      TYN+++  L +A+ +  A
Sbjct: 75  RNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVPTAVTYNSLISGLCKAERASEA 134

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASAL--VSMMVRDGFYPQTMTYTALI 586
            ++ ++M   G  P+  TY  +I      +  KS  AL     +V  GF P  +TY+ LI
Sbjct: 135 YDLLEEMVYSGCIPDIFTYTTLIT--GFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLI 192

Query: 587 KILLDYGDFDEALNLLDLVSLEG--IPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
             L   G   EA++L   +   G  +P+ V  YN+++   C  G++D    ++E+M +  
Sbjct: 193 DGLCKEGRLKEAIDLFGRMIKSGSCMPNTVT-YNSLISGFCRMGKMDEAMNLLERMAETG 251

Query: 645 VQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTL 687
             PD  T   + +G+      + A + L  ++ + L  +V T 
Sbjct: 252 SSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTF 294



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 103/497 (20%), Positives = 174/497 (35%), Gaps = 89/497 (17%)

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
           M  + +  N   Y +++  LCKGG ++EA  L+  +  R    P    YNS +    K  
Sbjct: 72  MANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKM--RKKCVPTAVTYNSLISGLCKAE 129

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRK 232
               A    DL++       E+ Y+  +                          IF+   
Sbjct: 130 RASEA---YDLLE-------EMVYSGCIP------------------------DIFTYTT 155

Query: 233 FVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVL 292
            +  F + +    A    + +VA                 R  R D+ +  + L      
Sbjct: 156 LITGFCKSKKSDDALRVFEQLVA-----------------RGFRPDV-VTYSCLIDGLCK 197

Query: 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
                + I   GR   SG               P++ TY+  I        +   M +L+
Sbjct: 198 EGRLKEAIDLFGRMIKSG------------SCMPNTVTYNSLISGFCRMGKMDEAMNLLE 245

Query: 353 IMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPE 412
            M +    P   T  TL     K   LD A  LL+Q++R         F +  D + +  
Sbjct: 246 RMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCREN 305

Query: 413 R---AIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
           R   A+ I  +MR+K   P + TY  +   +   N          Q++ A++    EMD 
Sbjct: 306 RLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRAN----------QLEEARKFMLEEMDC 355

Query: 469 ARNNIQHSHISMKNLLKA-LGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHR 527
             N +   +I ++ L K    +E M  EL++     +       Y TV+  L   ++   
Sbjct: 356 PPNVVSF-NIMIRGLCKVNRSSEAM--ELVEEARRRRCNPDVVMYTTVIDGLCREKKVDE 412

Query: 528 AMEIFKQM-KTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
           A  ++++M +  G  PN+ TY+ ++       C           +  G  P   TY  LI
Sbjct: 413 ACRVYRKMLEEPGCLPNSITYSTLV----TGLCNAGMLDRARGYIEKGCVPNIGTYNLLI 468

Query: 587 KILLDYGDFDEALNLLD 603
                    ++A  LLD
Sbjct: 469 DAFRKANRDEDARELLD 485



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 75/176 (42%), Gaps = 1/176 (0%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TY +++  L + +   +A+    +M + G  P+  TY  +I    +      A   +  M
Sbjct: 13  TYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEM 72

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
                 P  +TYT LI  L   G  DEA+ LL  +  + +P  V  YN+++   C+  R 
Sbjct: 73  ANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVPTAV-TYNSLISGLCKAERA 131

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
                ++E+M  +   PD  T   + +G+      + A+   + L  R    +V T
Sbjct: 132 SEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVT 187



 Score = 41.6 bits (96), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 72/355 (20%), Positives = 132/355 (37%), Gaps = 31/355 (8%)

Query: 52  SKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFH----ILNYCA--RSPDPLF 105
           +  T   ++  LC+ ER+  ++ LL      +S    D F     I  +C   +S D L 
Sbjct: 114 TAVTYNSLISGLCKAERASEAYDLLE--EMVYSGCIPDIFTYTTLITGFCKSKKSDDALR 171

Query: 106 VMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFL 165
           V E    +  +    +   Y  ++  LCK G L+EA +L   + +     P    YNS +
Sbjct: 172 VFE---QLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLI 228

Query: 166 GACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYS 224
               ++  M  A   L+ M       + VTYT L+        L   +++      K  +
Sbjct: 229 SGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLT 288

Query: 225 LSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYI-NRTSEGRLRSSRL------ 277
             + +    +    R   L  A   L  M   +    +Y  N   +G  R+++L      
Sbjct: 289 PDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKF 348

Query: 278 ---DIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGF 334
              ++  P N +        SF+ +I    +   S  A +L+ + +     P    Y   
Sbjct: 349 MLEEMDCPPNVV--------SFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTV 400

Query: 335 IRAIVSDRGLRNGMEVL-KIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ 388
           I  +  ++ +     V  K++++    P   T +TL      A  LD A   +++
Sbjct: 401 IDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLVTGLCNAGMLDRARGYIEK 455


>gi|145524846|ref|XP_001448245.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124415789|emb|CAK80848.1| unnamed protein product [Paramecium tetraurelia]
          Length = 967

 Score = 85.9 bits (211), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 90/391 (23%), Positives = 167/391 (42%), Gaps = 50/391 (12%)

Query: 294 WSFSDVIHACGRTQNSGL--AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVL 351
           ++++ +I+    + N  L  A QL  + +    QP    Y+  + A ++   L  G ++L
Sbjct: 338 FTYTTLINGLKNSDNMDLRLAFQLFEEYKQYN-QPDQIIYNCLLDACINAGDLNRGFQLL 396

Query: 352 KIMQQN-NLKPQDSTIATLSVECSKALELDLAEALLD---QISRCTNPKPFSAFLAACDT 407
             M+Q+ +++  + T  TL   C +   L+ A +L +   QI    N   F++ L +C  
Sbjct: 397 NEMKQSQSIQLDEITYNTLIKGCGRKKRLNEAISLFEEMKQIGIKPNRISFNSLLDSCVK 456

Query: 408 MDKPERAIKIFAKMRQK--LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIE 465
            +K   A + F +MR++  + PD  TY +L                              
Sbjct: 457 CNKMNVAWRYFEEMRKQYGIFPDNFTYSILV----------------------------- 487

Query: 466 MDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQES 525
                N I+ +H +   LL+A+     I+E  Q+  D         YN+++ + V+  E 
Sbjct: 488 -----NGIKTNHSNRDELLRAITLLEQIQETGQFKPDE------ILYNSLIDACVKFNEI 536

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
            + M++FK+MK   I P++ TY I+I     +     A  +   M +       +TY  L
Sbjct: 537 QKGMQLFKEMKNKSIEPSSVTYGILIKAYGKMNDLNGAFRMFEEMKQKKIPINDVTYGCL 596

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN-K 644
           +   +     D+AL  ++ +  + +P + +LY TI+K  C+  + +        M QN +
Sbjct: 597 VDACVRNDRLDQALQFIEQMKSQNLPINTVLYTTIIKGFCKLNQTEEAMKYFSLMKQNQR 656

Query: 645 VQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
             P+  T + +  G V  G  N A +  Q L
Sbjct: 657 TYPNLITYNSLLDGLVKNGLMNQADKLFQEL 687



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 81/386 (20%), Positives = 161/386 (41%), Gaps = 57/386 (14%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ +I  CGR +    A  L  +M+ +G++P+  +++  + + V    +       + M
Sbjct: 411 TYNTLIKGCGRKKRLNEAISLFEEMKQIGIKPNRISFNSLLDSCVKCNKMNVAWRYFEEM 470

Query: 355 -QQNNLKPQDSTIATL----SVECSKALELDLAEALLDQISRCTNPKP----FSAFLAAC 405
            +Q  + P + T + L        S   EL  A  LL+QI      KP    +++ + AC
Sbjct: 471 RKQYGIFPDNFTYSILVNGIKTNHSNRDELLRAITLLEQIQETGQFKPDEILYNSLIDAC 530

Query: 406 DTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAI 464
              ++ ++ +++F +M+ K + P   TY +L   +G +N                     
Sbjct: 531 VKFNEIQKGMQLFKEMKNKSIEPSSVTYGILIKAYGKMN--------------------- 569

Query: 465 EMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQE 524
             D+                   GA  M  E+ Q     K P+   TY  ++ + V    
Sbjct: 570 --DLN------------------GAFRMFEEMKQ----KKIPINDVTYGCLVDACVRNDR 605

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDG-FYPQTMTYT 583
             +A++  +QMK+  +P N   Y  +I     +   + A    S+M ++   YP  +TY 
Sbjct: 606 LDQALQFIEQMKSQNLPINTVLYTTIIKGFCKLNQTEEAMKYFSLMKQNQRTYPNLITYN 665

Query: 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
           +L+  L+  G  ++A  L   +    I  D++ ++T+LK  C +G +  +   ++ M   
Sbjct: 666 SLLDGLVKNGLMNQADKLFQELVESTIKPDLITFSTLLKGHCRRGNMKRLNETVQTMLHY 725

Query: 644 KVQPDPSTCHFVFSGYVN-CGFHNSA 668
           ++ PD S    +    +N   +HN  
Sbjct: 726 QINPDESLLQLILESCLNQQQYHNGV 751



 Score = 45.1 bits (105), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 37/169 (21%), Positives = 73/169 (43%), Gaps = 20/169 (11%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           T NT++    +  +  +A + F+ +K     P+  TY       ++I   K++    +M 
Sbjct: 304 TINTMIDQYFKNNQKDKAWKTFENLKLTSTKPDNFTY------TTLINGLKNSD---NMD 354

Query: 571 VRDGF----------YPQTMTYTALIKILLDYGDFDEALNLL-DLVSLEGIPHDVLLYNT 619
           +R  F           P  + Y  L+   ++ GD +    LL ++   + I  D + YNT
Sbjct: 355 LRLAFQLFEEYKQYNQPDQIIYNCLLDACINAGDLNRGFQLLNEMKQSQSIQLDEITYNT 414

Query: 620 ILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSA 668
           ++K    K R++    + E+M Q  ++P+  + + +    V C   N A
Sbjct: 415 LIKGCGRKKRLNEAISLFEEMKQIGIKPNRISFNSLLDSCVKCNKMNVA 463



 Score = 39.3 bits (90), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 28/134 (20%), Positives = 58/134 (43%), Gaps = 1/134 (0%)

Query: 93  ILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERY 152
           +++ C R+      ++    M+ + + +N   Y  +++  CK    EEA      + +  
Sbjct: 596 LVDACVRNDRLDQALQFIEQMKSQNLPINTVLYTTIIKGFCKLNQTEEAMKYFSLMKQNQ 655

Query: 153 GIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAV 212
             YP L  YNS L    K   M  A+     +    +  + +T++ LLK    + N+  +
Sbjct: 656 RTYPNLITYNSLLDGLVKNGLMNQADKLFQELVESTIKPDLITFSTLLKGHCRRGNMKRL 715

Query: 213 HEIWEDYIKHYSLS 226
           +E  +  + HY ++
Sbjct: 716 NETVQTML-HYQIN 728


>gi|302818914|ref|XP_002991129.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
 gi|300141060|gb|EFJ07775.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
          Length = 614

 Score = 85.9 bits (211), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 83/399 (20%), Positives = 170/399 (42%), Gaps = 38/399 (9%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A  ++ +M+  G +P+  TY+  I  +  +       E+ + M+     P   T  TL  
Sbjct: 98  ALAILHEMRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLD 157

Query: 372 ECSKALELDLAEALL---------DQISRCT-NPKPFSAFLAACDTMDKPERAIKIFAKM 421
              +  +L+ A AL          D   RC+ N   +S  +      ++  +A+++   M
Sbjct: 158 GLFRTGKLERAMALFQEMLDRRSHDMDDRCSPNVITYSVLIDGLCKANRVSQAVELLESM 217

Query: 422 RQK-LRPDIRTYELLFSLF---GNVNAPYEE----------------GNMFSQVDSAKRI 461
           + +   PD+ TY +L         V A +E                  ++   +  A+R+
Sbjct: 218 KARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRV 277

Query: 462 N---AIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTV 515
           +   A+  DM       + ++   L+  L   G +++      D     GTP    YN +
Sbjct: 278 SDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNML 337

Query: 516 LHSLVEAQESHRAMEIFKQMKTCGIPPNAATYN-IMIDCCSIIRCFKSASALVSMMVRDG 574
           ++ L +A +   ++ + ++  + GI P+  TY+ ++   C   R  ++   L+ +  R G
Sbjct: 338 INGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSR-G 396

Query: 575 FYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIE 634
             P  + Y+ LI  L   G  DEA +L ++++ +G   DV+ Y+T++   C+ GR+D   
Sbjct: 397 CPPDVILYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDADVVTYSTLIDGLCKAGRVDEAH 456

Query: 635 FIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
            ++ +M +    P   T + +  G  +    + A+E ++
Sbjct: 457 LLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVE 495



 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 86/375 (22%), Positives = 150/375 (40%), Gaps = 33/375 (8%)

Query: 319 MQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALE 378
           MQ  G+   +  Y   +  +  ++ L   + +L  M+ +  +P   T  +L     K  E
Sbjct: 70  MQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGLCKNNE 129

Query: 379 LDLAEALLDQISRC-TNPK--PFSAFLAACDTMDKPERAIKIFAKM--------RQKLRP 427
            D A+ L + +     +P    ++  L       K ERA+ +F +M          +  P
Sbjct: 130 PDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDMDDRCSP 189

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM--DMARNNIQHSHISMKNLLK 485
           ++ TY +L            + N  SQ        A+E+   M         I+   L+ 
Sbjct: 190 NVITYSVLIDGLC-------KANRVSQ--------AVELLESMKARGCSPDVITYTILVD 234

Query: 486 ALGAEGMIR---ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPP 542
            L  E  +    E+++   D+       TYN++LH L  A+    A+ + + M   G  P
Sbjct: 235 GLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTP 294

Query: 543 NAATYNIMID-CCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNL 601
           N  TY  +ID  C + R  K A A+++ M+  G  P  M Y  LI  L      DE++ L
Sbjct: 295 NVVTYGTLIDGLCKVGR-VKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIAL 353

Query: 602 LDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVN 661
           L      GI  DV+ Y++++   C   R+D    ++  +      PD      +  G   
Sbjct: 354 LRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCK 413

Query: 662 CGFHNSAMEALQVLS 676
            G  + A +  +V++
Sbjct: 414 AGKVDEAFDLYEVMA 428



 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 109/543 (20%), Positives = 210/543 (38%), Gaps = 51/543 (9%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y  +++  C+GG +++A      +  +  + P + + +  +    K    + A  C   M
Sbjct: 12  YAALLRGFCRGGEIDQAQRCFDEMRSK-NLVPNVFLCSILIDGLCKAKRSIDALRCFRAM 70

Query: 185 DSRMVGKNEVTYTELLKLAVWQKN-----LSAVHEIWEDYIKHYSLSIFSLRKFVWSFTR 239
               +  + V YT LL   +W++      L+ +HE+ +   +    ++ +    +    +
Sbjct: 71  QGSGIVADTVIYTALLS-GLWKEKRLDQALAILHEMRDHGCEP---NVVTYNSLIDGLCK 126

Query: 240 LRDLKSAYETLQHMVALAMMGKLYI-NRTSEGRLRSSRLDIPIPL--------------N 284
             +   A E  +HM ++     +   N   +G  R+ +L+  + L               
Sbjct: 127 NNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDMDDR 186

Query: 285 ALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGL 344
             P +     ++S +I    +      A +L+  M++ G  P   TY   +  +  +  +
Sbjct: 187 CSPNV----ITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKV 242

Query: 345 RNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALL-DQISRCTNPK--PFSAF 401
               EVL+ M      P   T  +L     +A  +  A AL+ D   R   P    +   
Sbjct: 243 AAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTL 302

Query: 402 LAACDTMDKPERAIKIFAKMRQKL-RPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKR 460
           +     + + + A  + A M  K   PD+  Y +L              N   + D    
Sbjct: 303 IDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLI-------------NGLCKADQVDE 349

Query: 461 INAIEMDMARNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLH 517
             A+        I+   ++  +++  L     + E   L+ Y      P     Y+T++ 
Sbjct: 350 SIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLID 409

Query: 518 SLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID-CCSIIRCFKSASALVSMMVRDGFY 576
            L +A +   A ++++ M   G   +  TY+ +ID  C   R    A  L++ MVR G  
Sbjct: 410 GLCKAGKVDEAFDLYEVMAGDGCDADVVTYSTLIDGLCKAGR-VDEAHLLLARMVRMGTP 468

Query: 577 PQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFI 636
           P TMTY +LIK L D    DEA+ L++ +         + YN ++   C   R+D    +
Sbjct: 469 PSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRMERVDSAVVL 528

Query: 637 IEQ 639
           +EQ
Sbjct: 529 LEQ 531



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 72/178 (40%), Gaps = 17/178 (9%)

Query: 506 PLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID-------CCS 555
           P+  P   TY  +L       E  +A   F +M++  + PN    +I+ID          
Sbjct: 3   PICQPDVYTYAALLRGFCRGGEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSID 62

Query: 556 IIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVL 615
            +RCF++       M   G    T+ YTAL+  L      D+AL +L  +   G   +V+
Sbjct: 63  ALRCFRA-------MQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVV 115

Query: 616 LYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
            YN+++   C+    D  + + E M   +  P   T + +  G    G    AM   Q
Sbjct: 116 TYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQ 173



 Score = 39.3 bits (90), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 40/182 (21%), Positives = 78/182 (42%), Gaps = 9/182 (4%)

Query: 513 NTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVR 572
           + ++  L +A+ S  A+  F+ M+  GI  +   Y  ++      +    A A++  M  
Sbjct: 48  SILIDGLCKAKRSIDALRCFRAMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRD 107

Query: 573 DGFYPQTMTYTALIKILLDYGDFDEALNLLD-LVSLEGIPHDVLLYNTILKKACEKGRID 631
            G  P  +TY +LI  L    + D A  L + + S+E  P  ++ YNT+L      G+++
Sbjct: 108 HGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPS-MVTYNTLLDGLFRTGKLE 166

Query: 632 VIEFIIEQM-------HQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEV 684
               + ++M         ++  P+  T   +  G       + A+E L+ +  R    +V
Sbjct: 167 RAMALFQEMLDRRSHDMDDRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDV 226

Query: 685 ST 686
            T
Sbjct: 227 IT 228


>gi|255556466|ref|XP_002519267.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541582|gb|EEF43131.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 665

 Score = 85.9 bits (211), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 88/412 (21%), Positives = 177/412 (42%), Gaps = 41/412 (9%)

Query: 296 FSDVIHACGRTQNSGLAEQ---LMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
           F +VI+   R    GLAEQ   +  +++  G QP+   Y+  + A++S+   +    +  
Sbjct: 117 FINVINTYRRV---GLAEQALKMFYRIREFGCQPTVKIYNHLLDAMLSENRFQMIEPIYS 173

Query: 353 IMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQIS-RCTNPK--PFSAFLAACDTMD 409
            M+++  +P   T   L     K   +D A  LL ++S +   P    ++  +++   + 
Sbjct: 174 NMKRDGKEPNVYTYNILLKALCKNNRVDGACKLLVEMSNKGCEPDVVSYTTVISSMSKLG 233

Query: 410 KPERAIKIFAKMRQKLRPDIRTYELL-------------FSLFGNVNAPYEEGNMFSQ-- 454
           K E A     ++  + +P++  Y  L             F L G +     + N+ +   
Sbjct: 234 KVEEA----RELSIRFQPNVSVYNALINGFCREYKVKEVFLLLGQMVEKGIDPNVITYST 289

Query: 455 -VDSAKRINAIEMDMAR------NNIQHSHISMKNLLKALGAEGMIRELIQYF---CDSK 504
            + S   I  +E+ +A            +  +  +L+K     G + E +  +    +  
Sbjct: 290 VISSLSGIGNVELALAVWAKMFVRGCSPNVYTFTSLMKGYFMRGRVLEALNIWNRMAEEG 349

Query: 505 TPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSAS 564
                  YNT++H L    +   A+ +  +M+  G  PN +TY  +ID  +       AS
Sbjct: 350 FEPNVVAYNTLIHGLCSHGKMGEAVSVSSKMERNGCSPNVSTYGALIDGFAKAGDLVGAS 409

Query: 565 ALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKA 624
            + + M+ +G  P  + YT+++ +L     F +A +L++ +S +  P + + +NT +K  
Sbjct: 410 EIWNKMMTNGCIPNVVVYTSMVNVLCRSSMFSQAWSLIEKMSTDNCPPNTVTFNTFIKGL 469

Query: 625 CEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
           C  GR++    +  QM Q    P+  T + V  G +     N   EAL++++
Sbjct: 470 CCSGRVECAINLFCQMEQYGCSPNIKTYNEVLDGLLK---ENRIKEALELVT 518



 Score = 75.9 bits (185), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 83/386 (21%), Positives = 165/386 (42%), Gaps = 25/386 (6%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           ++++ ++ A  +      A +L+++M + G +P   +Y   I ++ S  G       L I
Sbjct: 185 YTYNILLKALCKNNRVDGACKLLVEMSNKGCEPDVVSYTTVISSM-SKLGKVEEARELSI 243

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPK--PFSAFLAACDTMDK 410
             Q N+   ++ I     E  K  E+ L   LL Q + +  +P    +S  +++   +  
Sbjct: 244 RFQPNVSVYNALINGFCRE-YKVKEVFL---LLGQMVEKGIDPNVITYSTVISSLSGIGN 299

Query: 411 PERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
            E A+ ++AKM  +   P++ T+  L   +      +  G +   ++   R       MA
Sbjct: 300 VELALAVWAKMFVRGCSPNVYTFTSLMKGY------FMRGRVLEALNIWNR-------MA 346

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESH 526
               + + ++   L+  L + G + E +      +    +P   TY  ++    +A +  
Sbjct: 347 EEGFEPNVVAYNTLIHGLCSHGKMGEAVSVSSKMERNGCSPNVSTYGALIDGFAKAGDLV 406

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
            A EI+ +M T G  PN   Y  M++       F  A +L+  M  D   P T+T+   I
Sbjct: 407 GASEIWNKMMTNGCIPNVVVYTSMVNVLCRSSMFSQAWSLIEKMSTDNCPPNTVTFNTFI 466

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
           K L   G  + A+NL   +   G   ++  YN +L    ++ RI     ++ +M +  ++
Sbjct: 467 KGLCCSGRVECAINLFCQMEQYGCSPNIKTYNEVLDGLLKENRIKEALELVTEMEEKGME 526

Query: 647 PDPSTCHFVFSGYVNCGFHNSAMEAL 672
            +  T + +F G+ N G    A++ L
Sbjct: 527 LNLVTYNTIFGGFCNVGKFEEALKLL 552



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 76/321 (23%), Positives = 132/321 (41%), Gaps = 16/321 (4%)

Query: 315 LMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVEC- 373
           L+ QM   G+ P+  TY   I ++     +   + V   M      P   T  +L     
Sbjct: 271 LLGQMVEKGIDPNVITYSTVISSLSGIGNVELALAVWAKMFVRGCSPNVYTFTSLMKGYF 330

Query: 374 --SKALE-LDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDI 429
              + LE L++   + ++     N   ++  +    +  K   A+ + +KM R    P++
Sbjct: 331 MRGRVLEALNIWNRMAEEGFE-PNVVAYNTLIHGLCSHGKMGEAVSVSSKMERNGCSPNV 389

Query: 430 RTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGA 489
            TY  L   F       + G++   V +++  N +  +    N+   + SM N+L     
Sbjct: 390 STYGALIDGFA------KAGDL---VGASEIWNKMMTNGCIPNVV-VYTSMVNVLCRSSM 439

Query: 490 EGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNI 549
                 LI+       P  T T+NT +  L  +     A+ +F QM+  G  PN  TYN 
Sbjct: 440 FSQAWSLIEKMSTDNCPPNTVTFNTFIKGLCCSGRVECAINLFCQMEQYGCSPNIKTYNE 499

Query: 550 MIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEG 609
           ++D        K A  LV+ M   G     +TY  +     + G F+EAL LL  + + G
Sbjct: 500 VLDGLLKENRIKEALELVTEMEEKGMELNLVTYNTIFGGFCNVGKFEEALKLLGKMLVGG 559

Query: 610 IPHDVLLYNTILKKACEKGRI 630
           +  D + YNT+    C +G++
Sbjct: 560 VKPDAITYNTLTYAYCMQGKV 580



 Score = 69.3 bits (168), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 79/366 (21%), Positives = 153/366 (41%), Gaps = 26/366 (7%)

Query: 321 SLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELD 380
           S+  QP+   Y+  I     +  ++    +L  M +  + P   T +T+    S    ++
Sbjct: 242 SIRFQPNVSVYNALINGFCREYKVKEVFLLLGQMVEKGIDPNVITYSTVISSLSGIGNVE 301

Query: 381 LAEALLDQ--ISRCT-NPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLF 436
           LA A+  +  +  C+ N   F++ +       +   A+ I+ +M ++   P++  Y  L 
Sbjct: 302 LALAVWAKMFVRGCSPNVYTFTSLMKGYFMRGRVLEALNIWNRMAEEGFEPNVVAYNTL- 360

Query: 437 SLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKA---LGAEGMI 493
                ++     G M   V  + ++   E +    N+      +    KA   +GA  + 
Sbjct: 361 -----IHGLCSHGKMGEAVSVSSKM---ERNGCSPNVSTYGALIDGFAKAGDLVGASEIW 412

Query: 494 RELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID- 552
            +++   C     +    Y ++++ L  +    +A  + ++M T   PPN  T+N  I  
Sbjct: 413 NKMMTNGCIPNVVV----YTSMVNVLCRSSMFSQAWSLIEKMSTDNCPPNTVTFNTFIKG 468

Query: 553 -CCSI-IRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGI 610
            CCS  + C   A  L   M + G  P   TY  ++  LL      EAL L+  +  +G+
Sbjct: 469 LCCSGRVEC---AINLFCQMEQYGCSPNIKTYNEVLDGLLKENRIKEALELVTEMEEKGM 525

Query: 611 PHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAME 670
             +++ YNTI    C  G+ +    ++ +M    V+PD  T + +   Y   G   +A++
Sbjct: 526 ELNLVTYNTIFGGFCNVGKFEEALKLLGKMLVGGVKPDAITYNTLTYAYCMQGKVKTAIQ 585

Query: 671 ALQVLS 676
            L  LS
Sbjct: 586 LLDKLS 591



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 81/376 (21%), Positives = 150/376 (39%), Gaps = 23/376 (6%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           ++S VI +     N  LA  +  +M   G  P+ +T+   ++       +   + +   M
Sbjct: 286 TYSTVISSLSGIGNVELALAVWAKMFVRGCSPNVYTFTSLMKGYFMRGRVLEALNIWNRM 345

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPE-- 412
            +   +P      TL        ++  A ++  ++ R       S + A  D   K    
Sbjct: 346 AEEGFEPNVVAYNTLIHGLCSHGKMGEAVSVSSKMERNGCSPNVSTYGALIDGFAKAGDL 405

Query: 413 -RAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
             A +I+ KM      P++  Y  + ++           +MFSQ  S      IE  M+ 
Sbjct: 406 VGASEIWNKMMTNGCIPNVVVYTSMVNVLC-------RSSMFSQAWSL-----IE-KMST 452

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHR 527
           +N   + ++    +K L   G +   I  FC  +    +P   TYN VL  L++      
Sbjct: 453 DNCPPNTVTFNTFIKGLCCSGRVECAINLFCQMEQYGCSPNIKTYNEVLDGLLKENRIKE 512

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A+E+  +M+  G+  N  TYN +      +  F+ A  L+  M+  G  P  +TY  L  
Sbjct: 513 ALELVTEMEEKGMELNLVTYNTIFGGFCNVGKFEEALKLLGKMLVGGVKPDAITYNTLTY 572

Query: 588 ILLDYGDFDEALNLLDLVSLEG--IPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
                G    A+ LLD +S  G  +P +V  Y ++L   C +  ++     +++M    +
Sbjct: 573 AYCMQGKVKTAIQLLDKLSAGGKWVP-EVAAYTSLLWGICNQIGVEEAVLYLDKMLNEGI 631

Query: 646 QPDPSTCHFVFSGYVN 661
             + +T + +  G  N
Sbjct: 632 CLNAATWNALVRGLFN 647



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 75/162 (46%), Gaps = 5/162 (3%)

Query: 474 QHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPT----YNTVLHSLVEAQESHRAM 529
           QH+ ++ + +++ LG E  + + +QY        G       +  V+++      + +A+
Sbjct: 76  QHTQLTYQIMIEKLGRECDV-DGVQYLLQQMKLEGISCSEDLFINVINTYRRVGLAEQAL 134

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
           ++F +++  G  P    YN ++D       F+    + S M RDG  P   TY  L+K L
Sbjct: 135 KMFYRIREFGCQPTVKIYNHLLDAMLSENRFQMIEPIYSNMKRDGKEPNVYTYNILLKAL 194

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
                 D A  LL  +S +G   DV+ Y T++    + G+++
Sbjct: 195 CKNNRVDGACKLLVEMSNKGCEPDVVSYTTVISSMSKLGKVE 236


>gi|302753732|ref|XP_002960290.1| hypothetical protein SELMODRAFT_73828 [Selaginella moellendorffii]
 gi|300171229|gb|EFJ37829.1| hypothetical protein SELMODRAFT_73828 [Selaginella moellendorffii]
          Length = 546

 Score = 85.9 bits (211), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 81/364 (22%), Positives = 154/364 (42%), Gaps = 24/364 (6%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           ++++ V+    R +   LAE L+L+M    L P   T+   I        L + M  L+ 
Sbjct: 26  FAYNVVLKNVLRARQWELAEGLVLEMVEKDLVPDKFTFSTLISGYGRANRLEDAMGWLQE 85

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMD 409
           M+   +KP     +TL     K  +   A +L  ++ + +   P    +++ +       
Sbjct: 86  MEAGGIKPDLVIFSTLIELAGKVKDYSKATSLFSKL-KASGIAPDKVIYNSMINLYGKAK 144

Query: 410 KPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
             + A  + A+M++  L PD  +Y +L + +       E   +F ++    +   I++D+
Sbjct: 145 FYKEAQGLLAEMKEAGLMPDTVSYTILINAYAESQKYLEAKQVFLEM----KTKGIQLDV 200

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP----TYNTVLHSLVEAQE 524
              N+         ++   G   M+R+  + F      LG      TYNT++    EA+ 
Sbjct: 201 TTCNM---------MIDVYGKLEMVRDAEELFWSMSKTLGIQQNVVTYNTMIKVYKEAEL 251

Query: 525 SHRAMEIFKQMKT-CGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
              A  +F  M+   G+ PN  TYN ++    +    + A  LV  M + G  P  +TY+
Sbjct: 252 LSEAFNVFYYMQNKGGVEPNVITYNTILFLHGLTLQHEKAMRLVRKMQQRGIEPNAVTYS 311

Query: 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
            LI I    G +D A  L   +  +G   D +LY +++      G +   + ++E++ Q 
Sbjct: 312 TLISIYGKTGKYDRAAFLFKTLREKGFEMDEILYQSMIVVYERAGLVAHAKRLLEELKQP 371

Query: 644 KVQP 647
            + P
Sbjct: 372 DIVP 375



 Score = 48.5 bits (114), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 73/332 (21%), Positives = 144/332 (43%), Gaps = 25/332 (7%)

Query: 299 VIHACGRTQNSGLAEQLMLQM-QSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ-Q 356
           +I   G+ +    AE+L   M ++LG+Q +  TY+  I+       L     V   MQ +
Sbjct: 206 MIDVYGKLEMVRDAEELFWSMSKTLGIQQNVVTYNTMIKVYKEAELLSEAFNVFYYMQNK 265

Query: 357 NNLKPQDSTIAT------LSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDK 410
             ++P   T  T      L+++  KA+ L      + Q     N   +S  ++      K
Sbjct: 266 GGVEPNVITYNTILFLHGLTLQHEKAMRLVRK---MQQRGIEPNAVTYSTLISIYGKTGK 322

Query: 411 PERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
            +RA  +F  +R+K       +E+   L+ ++   YE   +   V  AKR+  +E ++ +
Sbjct: 323 YDRAAFLFKTLREK------GFEMDEILYQSMIVVYERAGL---VAHAKRL--LE-ELKQ 370

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAME 530
            +I     ++  L KA   E   + L     ++     + TY +++   V  + S  A++
Sbjct: 371 PDIVPRDTAISILAKAEKLEEAAK-LYWRSHEAGEIKESVTYKSMIQLFVRNKRSKNAID 429

Query: 531 IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590
           +F+ M+  G  P++ T  +++     +R  + A  L   M   G   +   +  ++K+  
Sbjct: 430 VFENMRESGFLPDSETTVVLLAAYGQLRQLEDAEKLYLDMRERGCTLEKEVHFQMLKLYG 489

Query: 591 DYGDFDEALNLLDLVSLEGIPHDVLLYNTILK 622
           D     EA ++   + LEG+  D  LY T+++
Sbjct: 490 DARKIREAEDMFAALKLEGLDGDE-LYLTMIR 520


>gi|302792252|ref|XP_002977892.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
 gi|300154595|gb|EFJ21230.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
          Length = 500

 Score = 85.9 bits (211), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 87/367 (23%), Positives = 155/367 (42%), Gaps = 30/367 (8%)

Query: 318 QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKAL 377
           +M S G  P  +TY   I A+  +  L    + L+ M   NL P   T   L     K  
Sbjct: 36  KMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGG 95

Query: 378 ELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLR----PDIRTYE 433
            +D A ALL ++ +   P   + + +    + K ERA + +  + + +     PDI TY 
Sbjct: 96  RVDEAVALLSKMRKKCVPTAVT-YNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYT 154

Query: 434 LLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMI 493
            L + F       +   +F Q+            +AR   +   ++   L+  L  EG +
Sbjct: 155 TLITGFCKSKKSDDALRVFEQL------------VARG-FRPDVVTYSCLIDGLCKEGRL 201

Query: 494 RELIQYF-----CDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYN 548
           +E I  F       S  P  T TYN+++       +   AM + ++M   G  P+  TY 
Sbjct: 202 KEAIDLFGRMIKSGSCMP-NTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYT 260

Query: 549 IMIDC-CSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSL 607
            +++  C + R    A  L++ M R G  P  +T+T+L+  L       +A+++L  +  
Sbjct: 261 TLMNGFCKLAR-LDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRR 319

Query: 608 EGIPHDVLLYNTILKKACEKGRI-DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHN 666
           +     V  YNTIL   C   ++ +  +F++E+M      P+  + + +  G       +
Sbjct: 320 KSCSPTVYTYNTILDGYCRANQLEEARKFMLEEMD---CPPNVVSFNIMIRGLCKVNRSS 376

Query: 667 SAMEALQ 673
            AME ++
Sbjct: 377 EAMELVE 383



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 67/283 (23%), Positives = 119/283 (42%), Gaps = 23/283 (8%)

Query: 412 ERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           E+A+    KM  K   PD+ TY  +       N  +E      +             MA 
Sbjct: 28  EQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEE-------------MAN 74

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCD--SKTPLGTPTYNTVLHSLVEAQESHRA 528
            N+  + ++   L+  L   G + E +        K      TYN+++  L +A+ +  A
Sbjct: 75  RNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVPTAVTYNSLISGLCKAERASEA 134

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASAL--VSMMVRDGFYPQTMTYTALI 586
            ++ ++M   G  P+  TY  +I      +  KS  AL     +V  GF P  +TY+ LI
Sbjct: 135 YDLLEEMVYSGCIPDIFTYTTLIT--GFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLI 192

Query: 587 KILLDYGDFDEALNLLDLVSLEG--IPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
             L   G   EA++L   +   G  +P+ V  YN+++   C  G++D    ++E+M +  
Sbjct: 193 DGLCKEGRLKEAIDLFGRMIKSGSCMPNTVT-YNSLISGFCRMGKMDEAMNLLERMAETG 251

Query: 645 VQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTL 687
             PD  T   + +G+      + A + L  ++ + L  +V T 
Sbjct: 252 SSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTF 294



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 104/497 (20%), Positives = 174/497 (35%), Gaps = 89/497 (17%)

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
           M  + +  N   Y +++  LCKGG ++EA  L+  +  R    P    YNS +    K  
Sbjct: 72  MANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKM--RKKCVPTAVTYNSLISGLCKAE 129

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRK 232
               A    DL++       E+ Y+  +                          IF+   
Sbjct: 130 RASEA---YDLLE-------EMVYSGCIP------------------------DIFTYTT 155

Query: 233 FVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVL 292
            +  F + +    A    + +VA                 R  R D+ +  + L      
Sbjct: 156 LITGFCKSKKSDDALRVFEQLVA-----------------RGFRPDV-VTYSCLIDGLCK 197

Query: 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
                + I   GR   SG               P++ TY+  I        +   M +L+
Sbjct: 198 EGRLKEAIDLFGRMIKSG------------SCMPNTVTYNSLISGFCRMGKMDEAMNLLE 245

Query: 353 IMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPE 412
            M +    P   T  TL     K   LD A  LL+Q++R         F +  D + +  
Sbjct: 246 RMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCREN 305

Query: 413 R---AIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
           R   A+ I  +MR+K   P + TY  +   +   N          Q++ A++    EMD 
Sbjct: 306 RLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRAN----------QLEEARKFMLEEMDC 355

Query: 469 ARNNIQHSHISMKNLLKA-LGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHR 527
             N +   +I ++ L K    +E M  EL++     +       Y TV+  L   ++   
Sbjct: 356 PPNVVSF-NIMIRGLCKVNRSSEAM--ELVEEARRRRCNPDVVMYTTVIDGLCREKKVDE 412

Query: 528 AMEIFKQM-KTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
           A  ++++M +  G  PN+ TY+ +I       C           +  G  P   TY  LI
Sbjct: 413 ACRVYRKMLEEPGCLPNSITYSTLI----TGLCNAGMLDRARGYIEKGCVPNIGTYNLLI 468

Query: 587 KILLDYGDFDEALNLLD 603
                    ++A  LLD
Sbjct: 469 DAFRKANRDEDARELLD 485



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 75/176 (42%), Gaps = 1/176 (0%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TY +++  L + +   +A+    +M + G  P+  TY  +I    +      A   +  M
Sbjct: 13  TYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEM 72

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
                 P  +TYT LI  L   G  DEA+ LL  +  + +P  V  YN+++   C+  R 
Sbjct: 73  ANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVPTAV-TYNSLISGLCKAERA 131

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
                ++E+M  +   PD  T   + +G+      + A+   + L  R    +V T
Sbjct: 132 SEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVT 187



 Score = 41.2 bits (95), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 72/355 (20%), Positives = 132/355 (37%), Gaps = 31/355 (8%)

Query: 52  SKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFH----ILNYCA--RSPDPLF 105
           +  T   ++  LC+ ER+  ++ LL      +S    D F     I  +C   +S D L 
Sbjct: 114 TAVTYNSLISGLCKAERASEAYDLLE--EMVYSGCIPDIFTYTTLITGFCKSKKSDDALR 171

Query: 106 VMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFL 165
           V E    +  +    +   Y  ++  LCK G L+EA +L   + +     P    YNS +
Sbjct: 172 VFE---QLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLI 228

Query: 166 GACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYS 224
               ++  M  A   L+ M       + VTYT L+        L   +++      K  +
Sbjct: 229 SGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLT 288

Query: 225 LSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYI-NRTSEGRLRSSRL------ 277
             + +    +    R   L  A   L  M   +    +Y  N   +G  R+++L      
Sbjct: 289 PDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKF 348

Query: 278 ---DIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGF 334
              ++  P N +        SF+ +I    +   S  A +L+ + +     P    Y   
Sbjct: 349 MLEEMDCPPNVV--------SFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTV 400

Query: 335 IRAIVSDRGLRNGMEVL-KIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ 388
           I  +  ++ +     V  K++++    P   T +TL      A  LD A   +++
Sbjct: 401 IDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLITGLCNAGMLDRARGYIEK 455


>gi|42567647|ref|NP_568141.2| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
 gi|122223689|sp|Q0WMY5.1|PP365_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g04810, chloroplastic; AltName: Full=Maize PPR4
           homolog; Short=AtPPR4; Flags: Precursor
 gi|110739199|dbj|BAF01515.1| membrane-associated salt-inducible protein-like [Arabidopsis
           thaliana]
 gi|332003406|gb|AED90789.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 952

 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 88/463 (19%), Positives = 176/463 (38%), Gaps = 64/463 (13%)

Query: 288 VMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNG 347
           + K  R  F  ++   GR  +   A +   +M++ G+ P+S  Y   I A    R +   
Sbjct: 304 ISKPSRTEFGLMVKFYGRRGDMHRARETFERMRARGITPTSRIYTSLIHAYAVGRDMDEA 363

Query: 348 MEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ---ISRCTNPKPFSAFL-A 403
           +  ++ M++  ++    T + +    SKA   + A+   D+   I +  N   +   + A
Sbjct: 364 LSCVRKMKEEGIEMSLVTYSVIVGGFSKAGHAEAADYWFDEAKRIHKTLNASIYGKIIYA 423

Query: 404 ACDT-----------------MDKP-----------------ERAIKIFAKMRQ-KLRPD 428
            C T                 +D P                 ++ + +F ++++    P 
Sbjct: 424 HCQTCNMERAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEKKGLVVFKRLKECGFTPT 483

Query: 429 IRTYELLFSLFGNVN----------APYEEG------------NMFSQVDSAKRINAIEM 466
           + TY  L +L+  V              EEG            N F ++       A+  
Sbjct: 484 VVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFE 543

Query: 467 DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNT---VLHSLVEAQ 523
           DM +  ++   I   N++ A    G +   IQ   + +     PT  T   ++H   ++ 
Sbjct: 544 DMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSG 603

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
           +  R++E+F  M+ CG  P   T+N +I+     R  + A  ++  M   G      TYT
Sbjct: 604 DMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSANEHTYT 663

Query: 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
            +++     GD  +A      +  EG+  D+  Y  +LK  C+ GR+     + ++M   
Sbjct: 664 KIMQGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACCKSGRMQSALAVTKEMSAR 723

Query: 644 KVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
            +  +    + +  G+   G    A + +Q +    +  ++ T
Sbjct: 724 NIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHT 766



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 91/399 (22%), Positives = 164/399 (41%), Gaps = 40/399 (10%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTY----DGFIRAIVSDRGLRNGMEVL 351
           +  +I+A  +T N   AE L+ +M+  G+      Y    DG+   +V+D   + G+ V 
Sbjct: 417 YGKIIYAHCQTCNMERAEALVREMEEEGIDAPIAIYHTMMDGY--TMVADE--KKGLVVF 472

Query: 352 KIMQQNNLKPQDSTIA------TLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAAC 405
           K +++    P   T        T   + SKALE+     ++ +     N K +S  +   
Sbjct: 473 KRLKECGFTPTVVTYGCLINLYTKVGKISKALEVS---RVMKEEGVKHNLKTYSMMINGF 529

Query: 406 DTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAI 464
             +     A  +F  M ++ ++PD+  Y  + S F  +      GNM   + + K +  +
Sbjct: 530 VKLKDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGM------GNMDRAIQTVKEMQKL 583

Query: 465 EMDMARNN---IQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVE 521
                      I H +    ++ ++L    M+R      C     +   T+N +++ LVE
Sbjct: 584 RHRPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRR-----CGCVPTV--HTFNGLINGLVE 636

Query: 522 AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMT 581
            ++  +A+EI  +M   G+  N  TY  ++   + +     A    + +  +G      T
Sbjct: 637 KRQMEKAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIFT 696

Query: 582 YTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMH 641
           Y AL+K     G    AL +   +S   IP +  +YN ++     +G +     +I+QM 
Sbjct: 697 YEALLKACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMK 756

Query: 642 QNKVQPDPSTCHFVFSGYVNCGFHNSA------MEALQV 674
           +  V+PD  T     S     G  N A      MEAL V
Sbjct: 757 KEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGV 795



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 103/232 (44%), Gaps = 10/232 (4%)

Query: 456 DSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTV 515
           D AKRI+          I ++H    N+ +A   E ++RE+ +   D+   +    Y+T+
Sbjct: 403 DEAKRIHKTLNASIYGKIIYAHCQTCNMERA---EALVREMEEEGIDAPIAI----YHTM 455

Query: 516 LHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGF 575
           +       +  + + +FK++K CG  P   TY  +I+  + +     A  +  +M  +G 
Sbjct: 456 MDGYTMVADEKKGLVVFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGV 515

Query: 576 YPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEF 635
                TY+ +I   +   D+  A  + + +  EG+  DV+LYN I+   C  G +D    
Sbjct: 516 KHNLKTYSMMINGFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQ 575

Query: 636 IIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTL 687
            +++M + + +P   T   +  GY   G       +L+V  M   C  V T+
Sbjct: 576 TVKEMQKLRHRPTTRTFMPIIHGYAKSG---DMRRSLEVFDMMRRCGCVPTV 624



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 101/493 (20%), Positives = 188/493 (38%), Gaps = 65/493 (13%)

Query: 120 LNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANL 179
           LN   Y  ++ A C+   +E A  L+  + E  GI   + +Y++ +     +       +
Sbjct: 412 LNASIYGKIIYAHCQTCNMERAEALVREM-EEEGIDAPIAIYHTMMDGYTMVADEKKGLV 470

Query: 180 CLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEI----WEDYIKHYSLSIFSLRKFVW 235
               +         VTY  L+ L      +S   E+     E+ +KH +L  +S+   + 
Sbjct: 471 VFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKH-NLKTYSM--MIN 527

Query: 236 SFTRLRDLKSAYETLQHMVALAMMGKLYI-NRTSEGRLRSSRLDIPIPLNALPVMKVLRW 294
            F +L+D  +A+   + MV   M   + + N           +D  I    +  M+ LR 
Sbjct: 528 GFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAI--QTVKEMQKLRH 585

Query: 295 -----SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGME 349
                +F  +IH   ++ +   + ++   M+  G  P+ HT++G I  +V  R +   +E
Sbjct: 586 RPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVE 645

Query: 350 VLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMD 409
           +L  M          T+A +S                       N   ++  +    ++ 
Sbjct: 646 ILDEM----------TLAGVSA----------------------NEHTYTKIMQGYASVG 673

Query: 410 KPERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
              +A + F +++ + L  DI TYE L      + A  + G M S +       A+  +M
Sbjct: 674 DTGKAFEYFTRLQNEGLDVDIFTYEAL------LKACCKSGRMQSAL-------AVTKEM 720

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQES 525
           +  NI  +      L+      G + E   LIQ            TY + + +  +A + 
Sbjct: 721 SARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDM 780

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
           +RA +  ++M+  G+ PN  TY  +I   +     + A +    M   G  P    Y  L
Sbjct: 781 NRATQTIEEMEALGVKPNIKTYTTLIKGWARASLPEKALSCYEEMKAMGIKPDKAVYHCL 840

Query: 586 IKILLDYGDFDEA 598
           +  LL      EA
Sbjct: 841 LTSLLSRASIAEA 853



 Score = 48.5 bits (114), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 81/179 (45%), Gaps = 10/179 (5%)

Query: 26  ERRNVANKLELSRTLT-TTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHS 84
           E+R +   +E+   +T   +  NE + +K  Q         G+  +A      L   +  
Sbjct: 636 EKRQMEKAVEILDEMTLAGVSANEHTYTKIMQ----GYASVGDTGKAFEYFTRL--QNEG 689

Query: 85  LGADDFFH--ILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEAS 142
           L  D F +  +L  C +S      +   + M  + I  N+  Y +++    + G + EA+
Sbjct: 690 LDVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAA 749

Query: 143 NLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLK 201
           +LI  + ++ G+ P +  Y SF+ AC+K   M  A   ++ M++  V  N  TYT L+K
Sbjct: 750 DLIQQM-KKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIK 807



 Score = 45.1 bits (105), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 61/356 (17%), Positives = 142/356 (39%), Gaps = 40/356 (11%)

Query: 106 VMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGE--RYGIYPILPVYNS 163
            +E  R+M+E+ +  N K Y +M+    K   L++ +N      +  + G+ P + +YN+
Sbjct: 503 ALEVSRVMKEEGVKHNLKTYSMMINGFVK---LKDWANAFAVFEDMVKEGMKPDVILYNN 559

Query: 164 FLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHY 223
            + A   + +M  A   +  M          T+  ++       ++    E++ D ++  
Sbjct: 560 IISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSGDMRRSLEVF-DMMRRC 618

Query: 224 SL--SIFSLRKFVWSFTRLRDLKSAYETL-----------QHMVALAMMGKLYINRTSEG 270
               ++ +    +      R ++ A E L           +H     M G   +  T + 
Sbjct: 619 GCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKA 678

Query: 271 -----RLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQ 325
                RL++  LD+ I            +++  ++ AC ++     A  +  +M +  + 
Sbjct: 679 FEYFTRLQNEGLDVDI------------FTYEALLKACCKSGRMQSALAVTKEMSARNIP 726

Query: 326 PSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEAL 385
            +S  Y+  I        +    ++++ M++  +KP   T  +    CSKA +++ A   
Sbjct: 727 RNSFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQT 786

Query: 386 LDQISRC---TNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFS 437
           ++++       N K ++  +        PE+A+  + +M+   ++PD   Y  L +
Sbjct: 787 IEEMEALGVKPNIKTYTTLIKGWARASLPEKALSCYEEMKAMGIKPDKAVYHCLLT 842


>gi|225465635|ref|XP_002270253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g08310, mitochondrial [Vitis vinifera]
 gi|296085293|emb|CBI29025.3| unnamed protein product [Vitis vinifera]
          Length = 854

 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 122/596 (20%), Positives = 236/596 (39%), Gaps = 85/596 (14%)

Query: 120 LNNKCYL------LMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHS 173
           +N++C +        ++ L   G +EEA+ L   +       P    +N  L A +K  S
Sbjct: 155 VNSRCAMSPGALGFFIRCLGSTGLVEEANLLFDQVKMMRLCVPNSYSFNCLLEAISKSGS 214

Query: 174 MVHANLCLDLMDSRMVGKNEVTYTELLKLAV----WQKNLSAVHEIW-EDYIKHYSLSIF 228
           +    + L  M       ++ T T +L+       + K LS  +EI+   ++  + LSI 
Sbjct: 215 IDLVEMRLKEMCDSGWEPDKYTLTSVLQAYCNSRKFDKALSVFNEIYGRGWVDGHVLSIL 274

Query: 229 SLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPV 288
                V +F++  ++  A+E ++ M                        D+ I LN    
Sbjct: 275 -----VLTFSKCGEVDKAFELIERME-----------------------DLGIRLN---- 302

Query: 289 MKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGM 348
                 +F  +IH   R      A QL  +MQ  G  P    YD  I  + + + +   +
Sbjct: 303 ----EKTFCVLIHGFVRQSRVDKALQLFKKMQKSGFAPDVSVYDALIGGLCAKKEIEKAL 358

Query: 349 EVLKIMQQNNLKPQDSTIATLSVECSKALEL---------DL-AEALL----DQISRCTN 394
            +L  M++  + P    ++ L   CS+ +++         DL  EA+L      ++   N
Sbjct: 359 HLLSEMKELGIDPDIQILSKLIAYCSEEVDIYRLIEERLEDLDTEAMLLLYNSVLNGLVN 418

Query: 395 PKPF--SAFLAACDTMDKPERAIKI--FAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGN 450
            K    + +L    T D      ++  F  +++ +RPD  ++ ++     N         
Sbjct: 419 GKSVDKAYYLLRAMTGDNYTDNFEVNKFFMVKEMVRPDTTSFSIVIDGLCNT-------- 470

Query: 451 MFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP 510
              ++D A    ++  DM R   + + +   NL+  L     + E      + K     P
Sbjct: 471 --GKLDLAL---SLFRDMVRVGCKQNVLLYNNLIDKLSNSNRLEECYLLLKEMKGSGFRP 525

Query: 511 T---YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALV 567
           T   +N++   L   ++   A+++ ++M+  G  P    Y +++      +    A   +
Sbjct: 526 TQFTHNSIFGCLCRREDVTGALDMVREMRVHGHEPWIKHYTLLVKQLCKRKRSAEACNFL 585

Query: 568 SMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEK 627
           + MVR+GF P  + Y+A I   +     D+AL +   +   G   DV+ YNT++   C+ 
Sbjct: 586 AEMVREGFLPDIVAYSAAIDGFVKIKAVDQALEIFRDICARGYCPDVVAYNTLINGFCKV 645

Query: 628 GRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEE 683
            R+     I+++M    + P   T + +  G+   G  + A   L     RM+ +E
Sbjct: 646 KRVSEAHDILDEMVAKGLVPSVVTYNLLIDGWCKNGDIDQAFHCLS----RMVGKE 697



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 73/160 (45%), Gaps = 2/160 (1%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
            Y+  +   V+ +   +A+EIF+ +   G  P+   YN +I+    ++    A  ++  M
Sbjct: 599 AYSAAIDGFVKIKAVDQALEIFRDICARGYCPDVVAYNTLINGFCKVKRVSEAHDILDEM 658

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLD-LVSLEGIPHDVLLYNTILKKACEKGR 629
           V  G  P  +TY  LI      GD D+A + L  +V  E  P +V+ Y T++   C  GR
Sbjct: 659 VAKGLVPSVVTYNLLIDGWCKNGDIDQAFHCLSRMVGKEREP-NVITYTTLIDGLCNAGR 717

Query: 630 IDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAM 669
            D    +  +M      P+  +   +  G   CG+ ++A+
Sbjct: 718 PDDAIHLWNEMRGKGCSPNRISFIALIHGLCKCGWPDAAL 757



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 82/445 (18%), Positives = 172/445 (38%), Gaps = 66/445 (14%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           +SF+ ++ A  ++ +  L E  + +M   G +P  +T    ++A  + R     + V   
Sbjct: 200 YSFNCLLEAISKSGSIDLVEMRLKEMCDSGWEPDKYTLTSVLQAYCNSRKFDKALSVFNE 259

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT---NPKPFSAFLAACDTMDK 410
           +           ++ L +  SK  E+D A  L++++       N K F   +       +
Sbjct: 260 IYGRGWV-DGHVLSILVLTFSKCGEVDKAFELIERMEDLGIRLNEKTFCVLIHGFVRQSR 318

Query: 411 PERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRIN------- 462
            ++A+++F KM++    PD+  Y+   +L G + A  E       +   K +        
Sbjct: 319 VDKALQLFKKMQKSGFAPDVSVYD---ALIGGLCAKKEIEKALHLLSEMKELGIDPDIQI 375

Query: 463 --------AIEMDMAR------------------NNIQHSHISMKN------LLKALGAE 490
                   + E+D+ R                  N++ +  ++ K+      LL+A+  +
Sbjct: 376 LSKLIAYCSEEVDIYRLIEERLEDLDTEAMLLLYNSVLNGLVNGKSVDKAYYLLRAMTGD 435

Query: 491 G-----------MIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCG 539
                       M++E+++          T +++ V+  L    +   A+ +F+ M   G
Sbjct: 436 NYTDNFEVNKFFMVKEMVRP--------DTTSFSIVIDGLCNTGKLDLALSLFRDMVRVG 487

Query: 540 IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEAL 599
              N   YN +ID  S     +    L+  M   GF P   T+ ++   L    D   AL
Sbjct: 488 CKQNVLLYNNLIDKLSNSNRLEECYLLLKEMKGSGFRPTQFTHNSIFGCLCRREDVTGAL 547

Query: 600 NLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
           +++  + + G    +  Y  ++K+ C++ R       + +M +    PD         G+
Sbjct: 548 DMVREMRVHGHEPWIKHYTLLVKQLCKRKRSAEACNFLAEMVREGFLPDIVAYSAAIDGF 607

Query: 660 VNCGFHNSAMEALQVLSMRMLCEEV 684
           V     + A+E  + +  R  C +V
Sbjct: 608 VKIKAVDQALEIFRDICARGYCPDV 632



 Score = 52.8 bits (125), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 52/225 (23%), Positives = 94/225 (41%), Gaps = 14/225 (6%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
            YNT+++   + +    A +I  +M   G+ P+  TYN++ID          A   +S M
Sbjct: 634 AYNTLINGFCKVKRVSEAHDILDEMVAKGLVPSVVTYNLLIDGWCKNGDIDQAFHCLSRM 693

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           V     P  +TYT LI  L + G  D+A++L + +  +G   + + +  ++   C+ G  
Sbjct: 694 VGKEREPNVITYTTLIDGLCNAGRPDDAIHLWNEMRGKGCSPNRISFIALIHGLCKCGWP 753

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEK 690
           D       +M + +  PD      V+   +     N        L+  +L E V+     
Sbjct: 754 DAALLYFREMGERET-PDT----IVYVALITSFISNKN----PTLAFEILKEMVA----- 799

Query: 691 RSDFEDLILAEDSEAESRILQFCEDSNENLAFTAALLQLRWCTIV 735
           +  F D +   D      IL+  ED++ +      + + R  TIV
Sbjct: 800 KGKFPDPLDKNDLPLRDAILELAEDASTSSNVKNLIAEGRIPTIV 844


>gi|115489040|ref|NP_001067007.1| Os12g0557800 [Oryza sativa Japonica Group]
 gi|113649514|dbj|BAF30026.1| Os12g0557800 [Oryza sativa Japonica Group]
          Length = 682

 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 91/377 (24%), Positives = 165/377 (43%), Gaps = 50/377 (13%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTY----DGFIRAIVSDRGLRNGME 349
           ++++ ++H   R      A +L+ QM+  G++P+  TY    DGF  A   +   R    
Sbjct: 210 FTYNSLVHGVCRRGIVDEAVRLVRQMEGEGIRPNVFTYTMLVDGFCNAGRVEEAFR---- 265

Query: 350 VLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALL-DQISRCTNPKPFSAFLAACDTM 408
           +L  M++  + P ++T  TL     + LE D A  +L D +   T+  P     +AC TM
Sbjct: 266 MLDKMKEKGVAPSEATYRTLVHGVFRCLERDKAYRMLSDWLGHETSLHP-----SACHTM 320

Query: 409 -------DKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAP----YEEGNMFSQVDS 457
                  D  + A++   +M        R Y L  + FG V +      E  ++   +DS
Sbjct: 321 LYCLSKKDMAKEAVEFEKRM------SARGYLLDSTAFGIVMSCALKCLEVSDLCELLDS 374

Query: 458 AKRINAIEMDMARNNIQHSHISMKNLLKA---LG---AEGMIRELIQYFCDSKTPLGTPT 511
             +            +  S ++ KN  KA   LG    +G++  ++             +
Sbjct: 375 FIKNGGNPGFDVYIMVIKSLLNCKNFSKANHYLGHMVLKGLLSSVM-------------S 421

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           YN V+   V+A    +A EI K+M+  G  PN  T+N +I   S +    +A  ++ M++
Sbjct: 422 YNMVIDCFVKAGAVDKAEEIVKEMQDKGFLPNLVTFNTLISGYSKLGNVHNAKVVLKMLM 481

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
             GF P  +T+T+LI  L +    D+A    + ++  G+  +   YN ++   C  G ++
Sbjct: 482 EHGFMPDIITFTSLIDGLCNTHQLDDAFVCFEEMAEWGVRPNAQTYNVLMHTLCSAGHVN 541

Query: 632 VIEFIIEQMHQNKVQPD 648
               ++ +M  + V PD
Sbjct: 542 KAIDLLNKMKIDGVTPD 558



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 78/379 (20%), Positives = 153/379 (40%), Gaps = 59/379 (15%)

Query: 299 VIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNN 358
           ++ + GR   +  A ++ +QM  LGL+PS+  Y  ++R               + M  + 
Sbjct: 159 LVESWGRLGLARYAHEVFVQMPRLGLRPSTAVYTAYLR--------------FQQMPADG 204

Query: 359 LKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIF 418
            +P   T  +L     +   +D A  L+ Q+                             
Sbjct: 205 CRPDHFTYNSLVHGVCRRGIVDEAVRLVRQME---------------------------- 236

Query: 419 AKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHI 478
               + +RP++ TY +L   F N     E    F  +D  K       +     + H   
Sbjct: 237 ---GEGIRPNVFTYTMLVDGFCNAGRVEEA---FRMLDKMKEKGVAPSEATYRTLVH--- 287

Query: 479 SMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTC 538
               + + L  +   R L  +    +T L     +T+L+ L +   +  A+E  K+M   
Sbjct: 288 ---GVFRCLERDKAYRMLSDWL-GHETSLHPSACHTMLYCLSKKDMAKEAVEFEKRMSAR 343

Query: 539 GIPPNAATYNIMIDCCSIIRCFKSAS--ALVSMMVRDGFYPQTMTYTALIKILLDYGDFD 596
           G   ++  + I++ C   ++C + +    L+   +++G  P    Y  +IK LL+  +F 
Sbjct: 344 GYLLDSTAFGIVMSCA--LKCLEVSDLCELLDSFIKNGGNPGFDVYIMVIKSLLNCKNFS 401

Query: 597 EALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVF 656
           +A + L  + L+G+   V+ YN ++    + G +D  E I+++M      P+  T + + 
Sbjct: 402 KANHYLGHMVLKGLLSSVMSYNMVIDCFVKAGAVDKAEEIVKEMQDKGFLPNLVTFNTLI 461

Query: 657 SGYVNCGFHNSAMEALQVL 675
           SGY   G  ++A   L++L
Sbjct: 462 SGYSKLGNVHNAKVVLKML 480



 Score = 53.1 bits (126), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 104/496 (20%), Positives = 176/496 (35%), Gaps = 70/496 (14%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y  ++  +C+ G ++EA  L+  + E  GI P +  Y   +        +  A   LD M
Sbjct: 212 YNSLVHGVCRRGIVDEAVRLVRQM-EGEGIRPNVFTYTMLVDGFCNAGRVEEAFRMLDKM 270

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH-YSLSIFSLRKFVWSFTRLRDL 243
             + V  +E TY  L+            + +  D++ H  SL   +    ++  ++    
Sbjct: 271 KEKGVAPSEATYRTLVHGVFRCLERDKAYRMLSDWLGHETSLHPSACHTMLYCLSKKDMA 330

Query: 244 KSAYETLQHMVALAMMGKLYINRTSEGRLRSSRL------------DIPIPLNALPVMKV 291
           K A E  + M A   +    ++ T+ G + S  L            D  I     P   V
Sbjct: 331 KEAVEFEKRMSARGYL----LDSTAFGIVMSCALKCLEVSDLCELLDSFIKNGGNPGFDV 386

Query: 292 LRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVL 351
               +  VI +    +N   A   +  M   GL  S  +Y+  I   V    +    E++
Sbjct: 387 ----YIMVIKSLLNCKNFSKANHYLGHMVLKGLLSSVMSYNMVIDCFVKAGAVDKAEEIV 442

Query: 352 KIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKP 411
           K MQ     P   T  TL    SK   +  A+ +L  +                      
Sbjct: 443 KEMQDKGFLPNLVTFNTLISGYSKLGNVHNAKVVLKML---------------------- 480

Query: 412 ERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471
                    M     PDI T+  L     N +          Q+D A      E +MA  
Sbjct: 481 ---------MEHGFMPDIITFTSLIDGLCNTH----------QLDDA--FVCFE-EMAEW 518

Query: 472 NIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRA 528
            ++ +  +   L+  L + G + + I      K    TP   ++N ++ S    ++  +A
Sbjct: 519 GVRPNAQTYNVLMHTLCSAGHVNKAIDLLNKMKIDGVTPDAYSFNALILSFCRMRKVDKA 578

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGF-YPQTMTYTALIK 587
            +IF  M   G+ P++ TYN +I      R    A  ++    R G       +Y  ++ 
Sbjct: 579 EDIFNDMVRFGVVPDSYTYNSLIKALCDERRVNKAKEILFARERSGCSTSNNQSYWPIVA 638

Query: 588 ILLDYGDFDEALNLLD 603
            L   G F EA  L+D
Sbjct: 639 ALAKMGQFSEAGELMD 654



 Score = 39.7 bits (91), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 25/133 (18%), Positives = 52/133 (39%), Gaps = 14/133 (10%)

Query: 531 IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590
           +  +++ CG   +      +++    +   + A  +   M R G  P T  YTA ++   
Sbjct: 140 LVAEVRGCGCEVSEELVCALVESWGRLGLARYAHEVFVQMPRLGLRPSTAVYTAYLR--- 196

Query: 591 DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650
                         +  +G   D   YN+++   C +G +D    ++ QM    ++P+  
Sbjct: 197 -----------FQQMPADGCRPDHFTYNSLVHGVCRRGIVDEAVRLVRQMEGEGIRPNVF 245

Query: 651 TCHFVFSGYVNCG 663
           T   +  G+ N G
Sbjct: 246 TYTMLVDGFCNAG 258


>gi|297839365|ref|XP_002887564.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297333405|gb|EFH63823.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 451

 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 73/322 (22%), Positives = 127/322 (39%), Gaps = 29/322 (9%)

Query: 394 NPKPFSAFLAACDTMDKPERAIKIFAKMRQ------------------KLRPDIRTYELL 435
           +PK F+       +  KP++A+K+F  M +                  K +   + YEL 
Sbjct: 123 SPKTFAIVAERYASSGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELF 182

Query: 436 FSLFGNVNAPYEEGNMFSQ----VDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEG 491
            +L G  +A     N+       +    +   +  +M    I  +  +   +L+     G
Sbjct: 183 RALRGRFSADTVTYNVIVNGWCLIKRTPKALEVLKEMVDRGINPNLTTYNTMLQGFFRAG 242

Query: 492 MIRELIQYFCDSKT---PLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYN 548
            IR+  ++F + K     +   TY TV+H    A E  R   +F +M   G+ P+ ATYN
Sbjct: 243 QIRQAWEFFLEMKKRNCEIDVVTYTTVVHGFGVAGEIKRTRNVFDEMIREGVLPSVATYN 302

Query: 549 IMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLE 608
             I         ++A  +   MVR G+ P   TY  LI+ L   G F     L+  +  E
Sbjct: 303 AFIQVLCKKDSVENAVVMFEEMVRKGYEPNVTTYNVLIRGLFHAGKFSRGEELMQRMENE 362

Query: 609 GIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSA 668
           G   +   YN +++   E   ++    + E+M      P+  T + + SG     F    
Sbjct: 363 GCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGTGDCLPNLDTYNILISGM----FVRKR 418

Query: 669 MEALQVLSMRMLCEEVSTLEEK 690
            E + V   +   +E+  L+ K
Sbjct: 419 SEDMVVAGNQAFAKEILRLQSK 440


>gi|224099199|ref|XP_002311400.1| predicted protein [Populus trichocarpa]
 gi|222851220|gb|EEE88767.1| predicted protein [Populus trichocarpa]
          Length = 548

 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 109/530 (20%), Positives = 201/530 (37%), Gaps = 62/530 (11%)

Query: 137 YLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTY 196
           Y EE    I FLG    I P   +YN+ + A  K +S+  A L    M +     +  TY
Sbjct: 37  YCEEIFGQISFLG----ITPSTRLYNAVIDALVKSNSLDLAYLKFQQMSADNCKPDRFTY 92

Query: 197 TELL----KLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQH 252
             L+    K+ V  + L  V ++ E +   YS ++++    ++ F   + +  A+   + 
Sbjct: 93  NMLIHGVCKIGVVDEALRLVKQM-EGF--GYSANVYTYTNLIYGFCNAKRVDEAFRVFET 149

Query: 253 MVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLA 312
           M       KL     +E  +RS                        ++H   R      A
Sbjct: 150 M-------KLRNVNPNEATIRS------------------------LVHGVFRCVAPREA 178

Query: 313 EQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVE 372
            +L++              D  +  +      R    +L+ + +    P  ST       
Sbjct: 179 FELVIDFIEKEPVLGRLACDTLLCCLSEKCMPREAGALLRKLGERGYLPDSSTFNITMTC 238

Query: 373 CSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIK----IFAKMRQKLRPD 428
             K L+++    +LD+         FS +LA  +T+ K  R ++    +   ++ +L  D
Sbjct: 239 LLKGLDVNETCGILDKFIARGAKLGFSFYLALIETLYKAGRGMEGDRYLNQMVKDRLVSD 298

Query: 429 IRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALG 488
           + +Y +L   F   N   +   +F               M    +  + ++   L+    
Sbjct: 299 VFSYNMLIDCFCKANVMNKAVMVFKV-------------MQDRGVSPNLVTFNTLISGHC 345

Query: 489 AEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAA 545
            +G + +  +           P   T+++++  L  AQ+   A+  F +M   GI PNA 
Sbjct: 346 KDGEVHKARELLQMLLELGLKPDIFTFSSIIDCLCRAQQFDDALGCFSEMVEWGISPNAV 405

Query: 546 TYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLV 605
           TYNI+I    +I     +  L+  M +DG  P   ++ ALI+     G  ++A  +   +
Sbjct: 406 TYNILIRSLCLIGDVGRSMKLLKDMRKDGISPDIFSFNALIQSFCRMGKVEKAEKMFVSM 465

Query: 606 SLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFV 655
           S  G+  +   Y  ++K   E GR D  + +   M  N   PD  TC+ +
Sbjct: 466 STLGLIPNNYTYGALVKALFELGRCDEAKKMFFSMEVNGCVPDSFTCNLI 515



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 54/141 (38%)

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
           EIF Q+   GI P+   YN +ID          A      M  D   P   TY  LI  +
Sbjct: 40  EIFGQISFLGITPSTRLYNAVIDALVKSNSLDLAYLKFQQMSADNCKPDRFTYNMLIHGV 99

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649
              G  DEAL L+  +   G   +V  Y  ++   C   R+D    + E M    V P+ 
Sbjct: 100 CKIGVVDEALRLVKQMEGFGYSANVYTYTNLIYGFCNAKRVDEAFRVFETMKLRNVNPNE 159

Query: 650 STCHFVFSGYVNCGFHNSAME 670
           +T   +  G   C     A E
Sbjct: 160 ATIRSLVHGVFRCVAPREAFE 180



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 81/380 (21%), Positives = 145/380 (38%), Gaps = 57/380 (15%)

Query: 299 VIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNN 358
           +I + GR   +   E++  Q+  LG+ PS+  Y+  I A+V    L       + M  +N
Sbjct: 25  LIGSWGRLGLAKYCEEIFGQISFLGITPSTRLYNAVIDALVKSNSLDLAYLKFQQMSADN 84

Query: 359 LKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIF 418
            KP   T   L     K   +D A  L+ Q+        +SA                  
Sbjct: 85  CKPDRFTYNMLIHGVCKIGVVDEALRLVKQME----GFGYSA------------------ 122

Query: 419 AKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHI 478
                    ++ TY  L  ++G  NA         +VD A R+      M   N+  +  
Sbjct: 123 ---------NVYTYTNL--IYGFCNA--------KRVDEAFRVFET---MKLRNVNPNEA 160

Query: 479 SMKNLLKALGAEGMIR--------ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAME 530
           ++++L+      G+ R        EL+  F + +  LG    +T+L  L E      A  
Sbjct: 161 TIRSLV-----HGVFRCVAPREAFELVIDFIEKEPVLGRLACDTLLCCLSEKCMPREAGA 215

Query: 531 IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590
           + +++   G  P+++T+NI + C            ++   +  G       Y ALI+ L 
Sbjct: 216 LLRKLGERGYLPDSSTFNITMTCLLKGLDVNETCGILDKFIARGAKLGFSFYLALIETLY 275

Query: 591 DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650
             G   E    L+ +  + +  DV  YN ++   C+   ++    + + M    V P+  
Sbjct: 276 KAGRGMEGDRYLNQMVKDRLVSDVFSYNMLIDCFCKANVMNKAVMVFKVMQDRGVSPNLV 335

Query: 651 TCHFVFSGYVNCGFHNSAME 670
           T + + SG+   G  + A E
Sbjct: 336 TFNTLISGHCKDGEVHKARE 355



 Score = 45.4 bits (106), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 68/148 (45%), Gaps = 5/148 (3%)

Query: 467 DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQ 523
           +M    I  + ++   L+++L   G +   ++   D +    +P   ++N ++ S     
Sbjct: 394 EMVEWGISPNAVTYNILIRSLCLIGDVGRSMKLLKDMRKDGISPDIFSFNALIQSFCRMG 453

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCC-SIIRCFKSASALVSMMVRDGFYPQTMTY 582
           +  +A ++F  M T G+ PN  TY  ++     + RC ++     SM V +G  P + T 
Sbjct: 454 KVEKAEKMFVSMSTLGLIPNNYTYGALVKALFELGRCDEAKKMFFSMEV-NGCVPDSFTC 512

Query: 583 TALIKILLDYGDFDEALNLLDLVSLEGI 610
             + + L   GDF+E  N+  + S  GI
Sbjct: 513 NLISENLFKQGDFEELQNIAKICSERGI 540


>gi|413933767|gb|AFW68318.1| hypothetical protein ZEAMMB73_786057 [Zea mays]
          Length = 645

 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 91/392 (23%), Positives = 163/392 (41%), Gaps = 34/392 (8%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGM-----E 349
           S++ V+      +  G  + LM +M + G  P+  T+   I  +      RNG+     E
Sbjct: 219 SYNAVLRGLCMARRWGHVQDLMEEMVAAGCPPNIVTFSTLIGHLC-----RNGLFERVHE 273

Query: 350 VLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACD 406
           V   M ++   P     AT+     K   L++A  +L+++       N   ++  L    
Sbjct: 274 VHAQMAEHGCAPDVRMYATIIDGVCKEERLEVARGILNRMPSYGLSPNVVCYNTLLKGLC 333

Query: 407 TMDKPERAIKIFAKMRQKLRP-DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIE 465
           + D+ E A  + A+M  K  P D  T+ +L              +   Q     R+  + 
Sbjct: 334 SADRWEEAEGLLAEMFDKDCPLDDVTFNILV-------------DFLCQNGLVDRVIEVL 380

Query: 466 MDMARNNIQHSHISMKNLLKALGAEGMIRELIQYF-----CDSKTPLGTPTYNTVLHSLV 520
             M  +      I+   ++     EG+I E +        C  +    T +Y  VL  L 
Sbjct: 381 EQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLRSMAACGCRP--NTVSYTIVLKGLC 438

Query: 521 EAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTM 580
            A+    A E+  QM   G PPN  T+N +I+        + A  L+  M+ +G  P  +
Sbjct: 439 SAERWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLI 498

Query: 581 TYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQM 640
           +Y+ +I  L   G+ DEAL LL+++  +G+  + ++Y++I      +GRI+ +  + E +
Sbjct: 499 SYSTVIDGLGKAGNTDEALELLNVMVKKGMSPNTIIYSSIASALSGEGRINKVIQMFENI 558

Query: 641 HQNKVQPDPSTCHFVFSGYVNCGFHNSAMEAL 672
               V+ D    + V S     G  + A+E L
Sbjct: 559 QDTTVRSDAVLYNAVISSLCKRGETDRAIEFL 590



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 97/392 (24%), Positives = 164/392 (41%), Gaps = 28/392 (7%)

Query: 295 SFSDVIHACGRTQNSGLAE---QLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVL 351
           +FS +I   G    +GL E   ++  QM   G  P    Y   I  +  +  L     +L
Sbjct: 254 TFSTLI---GHLCRNGLFERVHEVHAQMAEHGCAPDVRMYATIIDGVCKEERLEVARGIL 310

Query: 352 KIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDK- 410
             M    L P      TL      A   + AE LL ++     P     F    D + + 
Sbjct: 311 NRMPSYGLSPNVVCYNTLLKGLCSADRWEEAEGLLAEMFDKDCPLDDVTFNILVDFLCQN 370

Query: 411 --PERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMD 467
              +R I++  +M      PD+ TY  + + F       +EG +   V   + + A    
Sbjct: 371 GLVDRVIEVLEQMLEHGCMPDVITYTTVINGF------CKEGLIDEAVMLLRSMAACG-- 422

Query: 468 MARNNIQHSHISMKNLLKA---LGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQE 524
             R N     I +K L  A   + AE ++ ++IQ  C    P    T+NT+++ L +   
Sbjct: 423 -CRPNTVSYTIVLKGLCSAERWVDAEELMSQMIQQGC----PPNPVTFNTLINFLCKKGL 477

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
             +A+E+ KQM   G  P+  +Y+ +ID          A  L+++MV+ G  P T+ Y++
Sbjct: 478 VEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGNTDEALELLNVMVKKGMSPNTIIYSS 537

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID-VIEFIIEQMHQN 643
           +   L   G  ++ + + + +    +  D +LYN ++   C++G  D  IEF+   +   
Sbjct: 538 IASALSGEGRINKVIQMFENIQDTTVRSDAVLYNAVISSLCKRGETDRAIEFLAYMVSSG 597

Query: 644 KVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
            V P+ ST   +  G  + GF   A E L  L
Sbjct: 598 CV-PNESTYTILIRGLASEGFVKEAQEILTEL 628



 Score = 63.2 bits (152), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 85/186 (45%)

Query: 491 GMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIM 550
           G +++L++    +  P    T++T++  L       R  E+  QM   G  P+   Y  +
Sbjct: 234 GHVQDLMEEMVAAGCPPNIVTFSTLIGHLCRNGLFERVHEVHAQMAEHGCAPDVRMYATI 293

Query: 551 IDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGI 610
           ID        + A  +++ M   G  P  + Y  L+K L     ++EA  LL  +  +  
Sbjct: 294 IDGVCKEERLEVARGILNRMPSYGLSPNVVCYNTLLKGLCSADRWEEAEGLLAEMFDKDC 353

Query: 611 PHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAME 670
           P D + +N ++   C+ G +D +  ++EQM ++   PD  T   V +G+   G  + A+ 
Sbjct: 354 PLDDVTFNILVDFLCQNGLVDRVIEVLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVM 413

Query: 671 ALQVLS 676
            L+ ++
Sbjct: 414 LLRSMA 419



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/195 (22%), Positives = 81/195 (41%), Gaps = 4/195 (2%)

Query: 483 LLKALGAEGMIRELIQYFCDSKTPLGTP----TYNTVLHSLVEAQESHRAMEIFKQMKTC 538
           +L+A+  +G + E ++   D     G      +YN VL  L  A+      ++ ++M   
Sbjct: 187 VLQAVCDQGPVDEAVRLLRDLLPSFGCEPDVVSYNAVLRGLCMARRWGHVQDLMEEMVAA 246

Query: 539 GIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEA 598
           G PPN  T++ +I        F+    + + M   G  P    Y  +I  +      + A
Sbjct: 247 GCPPNIVTFSTLIGHLCRNGLFERVHEVHAQMAEHGCAPDVRMYATIIDGVCKEERLEVA 306

Query: 599 LNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
             +L+ +   G+  +V+ YNT+LK  C   R +  E ++ +M       D  T + +   
Sbjct: 307 RGILNRMPSYGLSPNVVCYNTLLKGLCSADRWEEAEGLLAEMFDKDCPLDDVTFNILVDF 366

Query: 659 YVNCGFHNSAMEALQ 673
               G  +  +E L+
Sbjct: 367 LCQNGLVDRVIEVLE 381


>gi|357143144|ref|XP_003572818.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Brachypodium distachyon]
          Length = 496

 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 122/290 (42%), Gaps = 23/290 (7%)

Query: 398 FSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDS 457
           F++ L A        +A  +   + ++  PD+ TY  L              + + +V  
Sbjct: 173 FNSLLDALGKSRHASKAASLVRALERRFPPDVVTYNTL-------------ADGWCRVKD 219

Query: 458 AKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFC--------DSKTPLGT 509
             R   +   MA + I  +  +   +LK     G ++    +F         D       
Sbjct: 220 TSRALDLLRQMAESGIAPTKTTYNVILKGFFRAGQLQHAWNFFLQMKKRGSKDENCKPDV 279

Query: 510 PTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSM 569
            +Y T++H L  A +  +A ++F +M   G PP  ATYN +I         + A  +   
Sbjct: 280 VSYTTIIHGLGVAGQLDKARKLFDEMSKEGCPPTIATYNALIQVICKKGNVEDAVTVFDD 339

Query: 570 MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
           M+R  + P  +TYT LI+ L   G  D A+ L++ +  EG    V  YN +++ + E+G 
Sbjct: 340 MIRKDYIPNVVTYTVLIRGLCHVGKIDRAMKLMERMKNEGCEPVVQTYNVLIRYSFEEGE 399

Query: 630 IDVIEFIIEQMHQN-KVQPDPSTCHFVFSG-YVNCGFHNSAMEALQVLSM 677
           +D    + E+M +  +  P+  T + V S  +V     + A+ A  V+ M
Sbjct: 400 MDKALHLFERMSKGEECLPNQDTYNIVISAMFVRKRAEDMAIAARMVMEM 449



 Score = 65.1 bits (157), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/282 (21%), Positives = 116/282 (41%), Gaps = 69/282 (24%)

Query: 415 IKIFAKMRQKLRPDIRTYELLFSLFG-NVNAPYEEGNMFSQVDSAKRINAIEMDMARNNI 473
           + +F ++R    P  RT+ +LF  F  +   P     +F  +  + R+     D+   N 
Sbjct: 121 LALFPRLRLPFTP--RTFPILFERFAASQRRPDIAVRLFLSLHRSHRV---AQDLPLFN- 174

Query: 474 QHSHISMKNLLKALG-------AEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESH 526
                   +LL ALG       A  ++R L + F     P    TYNT+       +++ 
Sbjct: 175 --------SLLDALGKSRHASKAASLVRALERRF-----PPDVVTYNTLADGWCRVKDTS 221

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMI---------------------------DCCSIIRC 559
           RA+++ +QM   GI P   TYN+++                           +C   +  
Sbjct: 222 RALDLLRQMAESGIAPTKTTYNVILKGFFRAGQLQHAWNFFLQMKKRGSKDENCKPDVVS 281

Query: 560 FKS-------------ASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL-DLV 605
           + +             A  L   M ++G  P   TY ALI+++   G+ ++A+ +  D++
Sbjct: 282 YTTIIHGLGVAGQLDKARKLFDEMSKEGCPPTIATYNALIQVICKKGNVEDAVTVFDDMI 341

Query: 606 SLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
             + IP +V+ Y  +++  C  G+ID    ++E+M     +P
Sbjct: 342 RKDYIP-NVVTYTVLIRGLCHVGKIDRAMKLMERMKNEGCEP 382


>gi|125556563|gb|EAZ02169.1| hypothetical protein OsI_24261 [Oryza sativa Indica Group]
          Length = 991

 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 121/582 (20%), Positives = 219/582 (37%), Gaps = 91/582 (15%)

Query: 97  CARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYP 156
           C R    LF+M     M+      N + +  ++  LCK G + +A  L++    + G+ P
Sbjct: 268 CVREALVLFLM-----MKRDGCSPNVRAFTFLISGLCKSGRVGDA-RLLFDAMPQNGVVP 321

Query: 157 ILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIW 216
            +  YN+ +   +KL  M  A    +LM+      ++ TY  L+     QK   A  E+ 
Sbjct: 322 SVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLCDQKTEEA-EELL 380

Query: 217 EDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSR 276
            + +K            V +FT L +     E      AL M  K+  ++         +
Sbjct: 381 NNAVKE------GFTPTVVTFTNLINGYCMAEKFDD--ALRMKNKMMSSK--------CK 424

Query: 277 LDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIR 336
           LD+ +              F  +I++  +      A++L+ ++ + GL P+  TY   I 
Sbjct: 425 LDLQV--------------FGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIID 470

Query: 337 AIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR---CT 393
                  +   +EVLK+M+++  +P   T  +L     K  +L  A ALL ++ +     
Sbjct: 471 GYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIP 530

Query: 394 NPKPFSAFLAA-CDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNM 451
           N   ++  L   CD  D  + A ++F  M Q  L+PD   Y +                 
Sbjct: 531 NVITYTTLLQGQCDEHDF-DNAFRLFEMMEQNGLKPDEHAYAV----------------- 572

Query: 452 FSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPT 511
                                          L  AL   G   E   +       L    
Sbjct: 573 -------------------------------LTDALCKAGRAEEAYSFIVRKGVALTKVY 601

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           Y T++    +A  +  A  + ++M   G  P++ TY++++      +    A  ++  M 
Sbjct: 602 YTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMS 661

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
             G       YT LI  +L  G  D A  + + ++  G       Y   +   C++GR++
Sbjct: 662 LRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLE 721

Query: 632 VIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
             E +I +M +  V PD  T + +  G  + G+ + A   L+
Sbjct: 722 DAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLK 763



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 116/529 (21%), Positives = 215/529 (40%), Gaps = 66/529 (12%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y  ++   CK G ++ A  ++  + ER G  P    YNS +    K   +  A   L  M
Sbjct: 465 YTSIIDGYCKSGKVDIALEVLKMM-ERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKM 523

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLK 244
               +  N +TYT LL+    + +      ++E                +     L+  +
Sbjct: 524 QKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFE----------------MMEQNGLKPDE 567

Query: 245 SAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACG 304
            AY  L    AL   G            R+      I    + + KV    ++ +I    
Sbjct: 568 HAYAVLTD--ALCKAG------------RAEEAYSFIVRKGVALTKVY---YTTLIDGFS 610

Query: 305 RTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDS 364
           +  N+  A  L+ +M   G  P S+TY   + A+   + L    E L I+ Q +L+    
Sbjct: 611 KAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLN---EALPILDQMSLRGIKC 667

Query: 365 TIATLSVECSKAL---ELDLAEALLDQISRCTNPKP----FSAFLAACDTMDKPERAIKI 417
           TI   ++   + L   + D A+ + ++++  +  KP    ++ F+ +     + E A  +
Sbjct: 668 TIFAYTILIDEMLREGKHDHAKRMYNEMTS-SGHKPSATTYTVFINSYCKEGRLEDAEDL 726

Query: 418 FAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI--NAIEMDMARNNIQ 474
             KM R+ + PD+ TY +L    G++      G +     + KR+   + E +     + 
Sbjct: 727 ILKMEREGVAPDVVTYNILIDGCGHM------GYIDRAFSTLKRMVGASCEPNYWTYCLL 780

Query: 475 HSHISMKNL--LKALGAEGMIR--------ELIQYFCDSKTPLGTPTYNTVLHSLVEAQE 524
             H+   NL  ++++   GM          +L++            TY++++    +A  
Sbjct: 781 LKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLERMVKHGLNPTVTTYSSLIAGFCKAGR 840

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
              A  +   M   G+ PN   Y ++I CC   + F+ A + VS+M   GF PQ  +Y  
Sbjct: 841 LEEACLLLDHMCGKGLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMSECGFQPQLESYRL 900

Query: 585 LIKILLDYGDFDEALNLL-DLVSLEGIPHDVLLYNTILKKACEKGRIDV 632
           L+  L + GDF++  +L  DL+ L G  HD + +  +     + G +D+
Sbjct: 901 LVVGLCNEGDFEKVKSLFCDLLEL-GYNHDEVAWKILNDGLLKAGYVDI 948



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 83/391 (21%), Positives = 160/391 (40%), Gaps = 24/391 (6%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +F+ +I    ++   G A  L   M   G+ PS  TY+  I        + + +++ ++M
Sbjct: 290 AFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELM 349

Query: 355 QQNNLKPQDSTIATLSVE-CSKALELDLAEALLDQISRCTNPK--PFSAFLAACDTMDKP 411
           ++N   P D T  TL    C +  E +  E L + +     P    F+  +      +K 
Sbjct: 350 EKNGCHPDDWTYNTLIYGLCDQKTE-EAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKF 408

Query: 412 ERAIKIFAK-MRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           + A+++  K M  K + D++ +  L              N   + D  K    +  +++ 
Sbjct: 409 DDALRMKNKMMSSKCKLDLQVFGKLI-------------NSLIKKDRLKEAKELLNEISA 455

Query: 471 NNIQHSHISMKNLLKALGAEGMIR---ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHR 527
           N +  + I+  +++      G +    E+++            TYN++++ LV+ ++ H+
Sbjct: 456 NGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHK 515

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           AM +  +M+  GI PN  TY  ++        F +A  L  MM ++G  P    Y  L  
Sbjct: 516 AMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTD 575

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
            L   G  +EA +    +  +G+    + Y T++    + G  D    +IE+M      P
Sbjct: 576 ALCKAGRAEEAYS---FIVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTP 632

Query: 648 DPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678
           D  T   +          N A+  L  +S+R
Sbjct: 633 DSYTYSVLLHALCKQKRLNEALPILDQMSLR 663



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 70/353 (19%), Positives = 141/353 (39%), Gaps = 27/353 (7%)

Query: 318 QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKAL 377
           Q+   GL P + TY+  I++   +  L       +++ +  L+P+  T   L +   +  
Sbjct: 173 QLVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRCFRLLLEGGLEPETFTCNALVLGYCRTG 232

Query: 378 ELDLA--EALLDQISRCT-NPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYE 433
           EL  A    L+  +  C  N   ++  +           A+ +F  M R    P++R + 
Sbjct: 233 ELRKACWLFLMMPLMGCQRNEYSYTILIQGLCEAKCVREALVLFLMMKRDGCSPNVRAFT 292

Query: 434 LLFSLF------GNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL 487
            L S        G+    ++       V S    NA+ +  ++    +  + +K L++  
Sbjct: 293 FLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKN 352

Query: 488 GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATY 547
           G                      TYNT+++ L + Q++  A E+       G  P   T+
Sbjct: 353 GCHP----------------DDWTYNTLIYGLCD-QKTEEAEELLNNAVKEGFTPTVVTF 395

Query: 548 NIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSL 607
             +I+   +   F  A  + + M+          +  LI  L+      EA  LL+ +S 
Sbjct: 396 TNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISA 455

Query: 608 EGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYV 660
            G+  +V+ Y +I+   C+ G++D+   +++ M ++  QP+  T + +  G V
Sbjct: 456 NGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLV 508



 Score = 55.8 bits (133), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 67/285 (23%), Positives = 118/285 (41%), Gaps = 17/285 (5%)

Query: 407 TMDKPERAIKIFAKM--RQKLRPDIRTYELLFSLFGNVNAP--YEE--GNMFSQVDSAK- 459
           T  +P  A+  F  +  R   R    ++  L  L     AP  YE    +M +  D+A+ 
Sbjct: 66  TAPEPATALAFFEWLARRDGFRHTADSHAALLHLLSRRRAPAQYERLVVSMLNCSDTAED 125

Query: 460 -RINAIEMDMARN--------NIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP 510
            R++A  +   R         + +  + ++++L +    E M R   Q   D   P  T 
Sbjct: 126 MRVSADAIQAIRRTGSARLALSPKCYNFALRSLARFDMTEYMGRVYSQLVQDGLLP-DTV 184

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TYNT++ S  +  +   A   F+ +   G+ P   T N ++         + A  L  MM
Sbjct: 185 TYNTMIKSYCKEGDLTTAHRCFRLLLEGGLEPETFTCNALVLGYCRTGELRKACWLFLMM 244

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
              G      +YT LI+ L +     EAL L  ++  +G   +V  +  ++   C+ GR+
Sbjct: 245 PLMGCQRNEYSYTILIQGLCEAKCVREALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRV 304

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
                + + M QN V P   T + +  GY   G  N A++  +++
Sbjct: 305 GDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELM 349



 Score = 43.1 bits (100), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 85/412 (20%), Positives = 158/412 (38%), Gaps = 48/412 (11%)

Query: 110 WRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACA 169
           + MME+  +  +   Y ++  ALCK G  EEA + I     R G+      Y + +   +
Sbjct: 555 FEMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYSFIV----RKGVALTKVYYTTLIDGFS 610

Query: 170 KLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDY-IKHYSLSIF 228
           K  +   A   ++ M       +  TY+ LL     QK L+    I +   ++    +IF
Sbjct: 611 KAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIF 670

Query: 229 SLRKFVWSFTRLRDLKSAYETLQHMVA-----LAMMGKLYINR-TSEGRLRSSRLDIPIP 282
           +    +    R      A      M +      A    ++IN    EGRL  +  D+ + 
Sbjct: 671 AYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAE-DLILK 729

Query: 283 LNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYD---------- 332
           +    V   +  +++ +I  CG       A   + +M     +P+  TY           
Sbjct: 730 MEREGVAPDV-VTYNILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLKHLLKGN 788

Query: 333 -GFIRAIVSDRGLRNGME------VLKIMQQNNLKPQDSTIATLSVECSKALELDLAEAL 385
             ++R+ V   G+ N +E      +L+ M ++ L P  +T ++L     KA  L+ A  L
Sbjct: 789 LAYVRS-VDTSGMWNLIELDITWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLL 847

Query: 386 LDQI---SRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGN 441
           LD +       N   ++  +  C      E+A+   + M +   +P + +Y LL     N
Sbjct: 848 LDHMCGKGLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMSECGFQPQLESYRLLVVGLCN 907

Query: 442 VNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMI 493
                 EG+        +++ ++  D+      H  ++ K L   L   G +
Sbjct: 908 ------EGDF-------EKVKSLFCDLLELGYNHDEVAWKILNDGLLKAGYV 946


>gi|449493486|ref|XP_004159312.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g22960, mitochondrial-like [Cucumis sativus]
          Length = 772

 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 87/389 (22%), Positives = 156/389 (40%), Gaps = 34/389 (8%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A+ +   M+  G++P+  TY+  + +   +  +   +E+L  MQ+    P D T   L  
Sbjct: 199 AKNVYGMMEQFGIKPTVVTYNTMLDSYCKEGRVDQALELLSEMQERGCYPNDVTYNVLVN 258

Query: 372 ECSKALELDLAEALLDQI--------SRCTNP--KPFSAFLAACDTMDKPERAIKIFAKM 421
             SK  EL+ A+ L++++        +   NP    F       +  D  E  +      
Sbjct: 259 GLSKKGELEQAKGLIEEMLNSGLNVSAYTYNPLINGFCQKGLFVEAFDLVEEMVN----- 313

Query: 422 RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAK-RINAIEMDMARNNIQHSHISM 480
            ++  P + TY  L  ++G           + QV   + R +    DM ++      +S 
Sbjct: 314 -RRAFPTLSTYNTL--MYGLCK--------WVQVTGVRLRFS----DMLKSKFTPDIVSF 358

Query: 481 KNLLKALGAEGMIRELIQYFCDSKTPLGTPT---YNTVLHSLVEAQESHRAMEIFKQMKT 537
            +LL      G I E    F + K     PT   YNT++H L        A+ + K+M  
Sbjct: 359 NSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGYLDAALRLKKEMTD 418

Query: 538 CGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDE 597
            G+ P+  TY I+++ C  +     A    + M+  G  P    Y   I   +   D   
Sbjct: 419 QGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYNTRIVGEMKIADTSV 478

Query: 598 ALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFS 657
           A ++ + +   G P DV+ YN  +   C++G  +    ++E M  + + PD  T   + +
Sbjct: 479 AFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIIN 538

Query: 658 GYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           G+V  G    A E    +  + +   V T
Sbjct: 539 GFVKNGHLRKAREVFNEMLSKGVAPSVVT 567



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 109/530 (20%), Positives = 205/530 (38%), Gaps = 60/530 (11%)

Query: 138 LEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYT 197
           L +A N +Y + E++GI P +  YN+ L +  K   +  A   L  M  R    N+VTY 
Sbjct: 196 LSKAKN-VYGMMEQFGIKPTVVTYNTMLDSYCKEGRVDQALELLSEMQERGCYPNDVTYN 254

Query: 198 ELLKLAVWQKNLSAVHEIWEDYIKH-YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMV-- 254
            L+     +  L     + E+ +    ++S ++    +  F +      A++ ++ MV  
Sbjct: 255 VLVNGLSKKGELEQAKGLIEEMLNSGLNVSAYTYNPLINGFCQKGLFVEAFDLVEEMVNR 314

Query: 255 ----ALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSG 310
                L+    L        ++   RL     L +     ++  SF+ +++   RT    
Sbjct: 315 RAFPTLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKFTPDIV--SFNSLLYGYCRTGCIS 372

Query: 311 LAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLS 370
            A  L  +++   L P+  TY+  I  +     L   + + K M    L P   T   L 
Sbjct: 373 EAFLLFDELKCRDLVPTVITYNTLIHGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTILV 432

Query: 371 VECSKALELDLAEALLDQ-ISRCTNPKPFSAFLAACDTMDKPERAIKIFAK---MRQKLR 426
             C K   + +A    ++ +S+   P  F+        M   + ++    +   +     
Sbjct: 433 NGCFKLGYVSMARGFFNEMLSKGLKPDRFAYNTRIVGEMKIADTSVAFSMQEEMLAAGFP 492

Query: 427 PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKA 486
           PD+ TY +       V+A  ++GN     D                          LL+ 
Sbjct: 493 PDVITYNVF------VHALCQQGNFEEACD--------------------------LLEN 520

Query: 487 LGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAAT 546
           + ++G+I + +             TY ++++  V+     +A E+F +M + G+ P+  T
Sbjct: 521 MVSDGLIPDHV-------------TYTSIINGFVKNGHLRKAREVFNEMLSKGVAPSVVT 567

Query: 547 YNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVS 606
           Y ++I   +  +    A    S M+        +TY A+I  L      DEA    D + 
Sbjct: 568 YTVLIHAHAAKQMLDLAFMYFSKMLEKSVPANVITYNAIINGLCMTRRMDEAYKYFDEME 627

Query: 607 LEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVF 656
            +GI  +   Y  ++ ++C  G  +    +  +M   K+QPD  T H VF
Sbjct: 628 EKGILPNKFSYTILINESCNMGYWEEALRLYREMLDRKIQPDSFT-HSVF 676



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 65/146 (44%)

Query: 513 NTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVR 572
           N +L  L +     +A  ++  M+  GI P   TYN M+D          A  L+S M  
Sbjct: 184 NRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDSYCKEGRVDQALELLSEMQE 243

Query: 573 DGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDV 632
            G YP  +TY  L+  L   G+ ++A  L++ +   G+      YN ++   C+KG    
Sbjct: 244 RGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSAYTYNPLINGFCQKGLFVE 303

Query: 633 IEFIIEQMHQNKVQPDPSTCHFVFSG 658
              ++E+M   +  P  ST + +  G
Sbjct: 304 AFDLVEEMVNRRAFPTLSTYNTLMYG 329



 Score = 47.0 bits (110), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 46/89 (51%)

Query: 570 MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
           M+R+G  P       ++++L D     +A N+  ++   GI   V+ YNT+L   C++GR
Sbjct: 171 MIRNGLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDSYCKEGR 230

Query: 630 IDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
           +D    ++ +M +    P+  T + + +G
Sbjct: 231 VDQALELLSEMQERGCYPNDVTYNVLVNG 259



 Score = 44.3 bits (103), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 36/157 (22%), Positives = 69/157 (43%), Gaps = 2/157 (1%)

Query: 531 IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590
           +F +M   G+ P+    N ++           A  +  MM + G  P  +TY  ++    
Sbjct: 167 VFDKMIRNGLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDSYC 226

Query: 591 DYGDFDEALNLLDLVSLEG-IPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649
             G  D+AL LL  +   G  P+DV  YN ++    +KG ++  + +IE+M  + +    
Sbjct: 227 KEGRVDQALELLSEMQERGCYPNDV-TYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSA 285

Query: 650 STCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
            T + + +G+   G    A + ++ +  R     +ST
Sbjct: 286 YTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLST 322


>gi|449435202|ref|XP_004135384.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g22960, mitochondrial-like [Cucumis sativus]
          Length = 717

 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 87/389 (22%), Positives = 156/389 (40%), Gaps = 34/389 (8%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A+ +   M+  G++P+  TY+  + +   +  +   +E+L  MQ+    P D T   L  
Sbjct: 199 AKNVYGMMEQFGIKPTVVTYNTMLDSYCKEGRVDQALELLSEMQERGCYPNDVTYNVLVN 258

Query: 372 ECSKALELDLAEALLDQI--------SRCTNP--KPFSAFLAACDTMDKPERAIKIFAKM 421
             SK  EL+ A+ L++++        +   NP    F       +  D  E  +      
Sbjct: 259 GLSKKGELEQAKGLIEEMLNSGLNVSAYTYNPLINGFCQKGLFVEAFDLVEEMVN----- 313

Query: 422 RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAK-RINAIEMDMARNNIQHSHISM 480
            ++  P + TY  L  ++G           + QV   + R +    DM ++      +S 
Sbjct: 314 -RRAFPTLSTYNTL--MYGLCK--------WVQVTGVRLRFS----DMLKSKFTPDIVSF 358

Query: 481 KNLLKALGAEGMIRELIQYFCDSKTPLGTPT---YNTVLHSLVEAQESHRAMEIFKQMKT 537
            +LL      G I E    F + K     PT   YNT++H L        A+ + K+M  
Sbjct: 359 NSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGYLDAALRLKKEMTD 418

Query: 538 CGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDE 597
            G+ P+  TY I+++ C  +     A    + M+  G  P    Y   I   +   D   
Sbjct: 419 QGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYNTRIVGEMKIADTSV 478

Query: 598 ALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFS 657
           A ++ + +   G P DV+ YN  +   C++G  +    ++E M  + + PD  T   + +
Sbjct: 479 AFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIIN 538

Query: 658 GYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           G+V  G    A E    +  + +   V T
Sbjct: 539 GFVKNGHLRKAREVFNEMLSKGVAPSVVT 567



 Score = 80.5 bits (197), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 111/531 (20%), Positives = 207/531 (38%), Gaps = 62/531 (11%)

Query: 138 LEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYT 197
           L +A N +Y + E++GI P +  YN+ L +  K   +  A   L  M  R    N+VTY 
Sbjct: 196 LSKAKN-VYGMMEQFGIKPTVVTYNTMLDSYCKEGRVDQALELLSEMQERGCYPNDVTYN 254

Query: 198 ELLKLAVWQKNLSAVHEIWEDYIKH-YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMV-- 254
            L+     +  L     + E+ +    ++S ++    +  F +      A++ ++ MV  
Sbjct: 255 VLVNGLSKKGELEQAKGLIEEMLNSGLNVSAYTYNPLINGFCQKGLFVEAFDLVEEMVNR 314

Query: 255 ----ALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSG 310
                L+    L        ++   RL     L +     ++  SF+ +++   RT    
Sbjct: 315 RAFPTLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKFTPDIV--SFNSLLYGYCRTGCIS 372

Query: 311 LAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLS 370
            A  L  +++   L P+  TY+  I  +     L   + + K M    L P   T   L 
Sbjct: 373 EAFLLFDELKCRDLVPTVITYNTLIHGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTILV 432

Query: 371 VECSKALELDLAEALLDQ-ISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLR--- 426
             C K   + +A    ++ +S+   P  F+        M   + ++  F+   + L    
Sbjct: 433 NGCFKLGYVSMARGFFNEMLSKGLKPDRFAYNTRIVGEMKIADTSVA-FSMQEEMLAAGF 491

Query: 427 -PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLK 485
            PD+ TY +       V+A  ++GN     D                          LL+
Sbjct: 492 PPDVITYNVF------VHALCQQGNFEEACD--------------------------LLE 519

Query: 486 ALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAA 545
            + ++G+I + +             TY ++++  V+     +A E+F +M + G+ P+  
Sbjct: 520 NMVSDGLIPDHV-------------TYTSIINGFVKNGHLRKAREVFNEMLSKGVAPSVV 566

Query: 546 TYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLV 605
           TY ++I   +  +    A    S M+        +TY A+I  L      DEA    D +
Sbjct: 567 TYTVLIHAHAAKQMLDLAFMYFSKMLEKSVPANVITYNAIINGLCMTRRMDEAYKYFDEM 626

Query: 606 SLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVF 656
             +GI  +   Y  ++ ++C  G  +    +  +M   K+QPD  T H VF
Sbjct: 627 EEKGILPNKFSYTILINESCNMGYWEEALRLYREMLDRKIQPDSFT-HSVF 676



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 65/146 (44%)

Query: 513 NTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVR 572
           N +L  L +     +A  ++  M+  GI P   TYN M+D          A  L+S M  
Sbjct: 184 NRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDSYCKEGRVDQALELLSEMQE 243

Query: 573 DGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDV 632
            G YP  +TY  L+  L   G+ ++A  L++ +   G+      YN ++   C+KG    
Sbjct: 244 RGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSAYTYNPLINGFCQKGLFVE 303

Query: 633 IEFIIEQMHQNKVQPDPSTCHFVFSG 658
              ++E+M   +  P  ST + +  G
Sbjct: 304 AFDLVEEMVNRRAFPTLSTYNTLMYG 329



 Score = 46.6 bits (109), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 46/89 (51%)

Query: 570 MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
           M+R+G  P       ++++L D     +A N+  ++   GI   V+ YNT+L   C++GR
Sbjct: 171 MIRNGLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDSYCKEGR 230

Query: 630 IDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
           +D    ++ +M +    P+  T + + +G
Sbjct: 231 VDQALELLSEMQERGCYPNDVTYNVLVNG 259



 Score = 43.5 bits (101), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 36/157 (22%), Positives = 69/157 (43%), Gaps = 2/157 (1%)

Query: 531 IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590
           +F +M   G+ P+    N ++           A  +  MM + G  P  +TY  ++    
Sbjct: 167 VFDKMIRNGLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDSYC 226

Query: 591 DYGDFDEALNLLDLVSLEG-IPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649
             G  D+AL LL  +   G  P+DV  YN ++    +KG ++  + +IE+M  + +    
Sbjct: 227 KEGRVDQALELLSEMQERGCYPNDV-TYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSA 285

Query: 650 STCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
            T + + +G+   G    A + ++ +  R     +ST
Sbjct: 286 YTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLST 322


>gi|125544564|gb|EAY90703.1| hypothetical protein OsI_12306 [Oryza sativa Indica Group]
          Length = 644

 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 92/373 (24%), Positives = 155/373 (41%), Gaps = 22/373 (5%)

Query: 314 QLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVEC 373
           +++ QM   G  P    Y   I  I  +  L    E+L  M    LKP      T+    
Sbjct: 272 EVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGL 331

Query: 374 SKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDK---PERAIKIFAKM-RQKLRPDI 429
             A     AE LL ++ +   P     F    D   +    +R I++  +M      PD+
Sbjct: 332 CSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDV 391

Query: 430 RTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKA--- 486
            TY  +      +N   +EG +   V   K +++      + N     I +K L  A   
Sbjct: 392 ITYTTV------INGFCKEGLIDEAVMLLKSMSSCG---CKPNTVSYTIVLKGLCSAGRW 442

Query: 487 LGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAAT 546
           + AE ++ ++IQ  C    P    T+NT+++ L +     +A+E+ KQM   G  P+  +
Sbjct: 443 VDAEELMSQMIQQGC----PPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLIS 498

Query: 547 YNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVS 606
           Y+ +ID        + A  L+++MV  G  P T+ Y+++   L   G  ++ + + D + 
Sbjct: 499 YSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIK 558

Query: 607 LEGIPHDVLLYNTILKKACEKGRID-VIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFH 665
              I  D +LYN ++   C++   D  I+F    M  N   P+ ST   +  G  + G  
Sbjct: 559 DTTIRSDAVLYNAVISSLCKRWETDRAIDF-FAYMVSNGCMPNESTYTMLIKGLASEGLA 617

Query: 666 NSAMEALQVLSMR 678
             A E L  L  R
Sbjct: 618 KEAQELLSELCSR 630



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 79/185 (42%), Gaps = 4/185 (2%)

Query: 489 AEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYN 548
           A G++R+L  + C++       +YN VL  L  A+      E+  +M      PN  T+N
Sbjct: 200 AVGLLRKLAFFGCEADIV----SYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFN 255

Query: 549 IMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLE 608
            +I        F+    +++ M   G  P    Y  +I  +   G  + A  +L+ +   
Sbjct: 256 TLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSY 315

Query: 609 GIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSA 668
           G+  +V+ YNT+LK  C   R    E ++ +M Q     D  T + +   +   G  +  
Sbjct: 316 GLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRV 375

Query: 669 MEALQ 673
           +E L+
Sbjct: 376 IELLE 380



 Score = 53.5 bits (127), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 70/152 (46%)

Query: 507 LGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASAL 566
           L T   N VL+++ E      A+ + +++   G   +  +YN ++    + + +     L
Sbjct: 179 LDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEEL 238

Query: 567 VSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE 626
           +  MVR    P  +T+  LI  L   G F+    +L  +S  G   D+ +Y TI+   C+
Sbjct: 239 MDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICK 298

Query: 627 KGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
           +G ++V   I+ +M    ++P+    + V  G
Sbjct: 299 EGHLEVANEILNRMPSYGLKPNVVCYNTVLKG 330



 Score = 46.6 bits (109), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 32/147 (21%), Positives = 64/147 (43%)

Query: 505 TPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSAS 564
            P    T+  V+  L        A+E+  +M   G  P    Y+++++       F+++ 
Sbjct: 107 VPPNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSV 166

Query: 565 ALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKA 624
            ++  M   G    T     ++  + + G  DEA+ LL  ++  G   D++ YN +LK  
Sbjct: 167 RVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGL 226

Query: 625 CEKGRIDVIEFIIEQMHQNKVQPDPST 651
           C   R   +E ++++M +    P+  T
Sbjct: 227 CMAKRWGDVEELMDEMVRVDCAPNIVT 253



 Score = 42.0 bits (97), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 27/142 (19%), Positives = 66/142 (46%), Gaps = 6/142 (4%)

Query: 510 PTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSM 569
           P Y+ +L +   +     ++ + + M   G   +    N++++      C   A  L+  
Sbjct: 147 PMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRK 206

Query: 570 MVRDGFYPQTMTYTALIKILL---DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE 626
           +   G     ++Y A++K L     +GD +E ++  ++V ++  P +++ +NT++   C 
Sbjct: 207 LAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMD--EMVRVDCAP-NIVTFNTLIGYLCR 263

Query: 627 KGRIDVIEFIIEQMHQNKVQPD 648
            G  + +  ++ QM ++   PD
Sbjct: 264 NGLFERVHEVLAQMSEHGCTPD 285


>gi|108709396|gb|ABF97191.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215687193|dbj|BAG91758.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222625245|gb|EEE59377.1| hypothetical protein OsJ_11489 [Oryza sativa Japonica Group]
          Length = 644

 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 92/373 (24%), Positives = 155/373 (41%), Gaps = 22/373 (5%)

Query: 314 QLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVEC 373
           +++ QM   G  P    Y   I  I  +  L    E+L  M    LKP      T+    
Sbjct: 272 EVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGL 331

Query: 374 SKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDK---PERAIKIFAKM-RQKLRPDI 429
             A     AE LL ++ +   P     F    D   +    +R I++  +M      PD+
Sbjct: 332 CSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDV 391

Query: 430 RTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKA--- 486
            TY  +      +N   +EG +   V   K +++      + N     I +K L  A   
Sbjct: 392 ITYTTV------INGFCKEGLIDEAVMLLKSMSSCG---CKPNTVSYTIVLKGLCSAGRW 442

Query: 487 LGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAAT 546
           + AE ++ ++IQ  C    P    T+NT+++ L +     +A+E+ KQM   G  P+  +
Sbjct: 443 VDAEELMSQMIQQGC----PPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLIS 498

Query: 547 YNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVS 606
           Y+ +ID        + A  L+++MV  G  P T+ Y+++   L   G  ++ + + D + 
Sbjct: 499 YSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIK 558

Query: 607 LEGIPHDVLLYNTILKKACEKGRID-VIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFH 665
              I  D +LYN ++   C++   D  I+F    M  N   P+ ST   +  G  + G  
Sbjct: 559 DTTIRSDAVLYNAVISSLCKRWETDRAIDF-FAYMVSNGCMPNESTYTMLIKGLASEGLA 617

Query: 666 NSAMEALQVLSMR 678
             A E L  L  R
Sbjct: 618 KEAQELLSELCSR 630



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 79/185 (42%), Gaps = 4/185 (2%)

Query: 489 AEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYN 548
           A G++R+L  + C++       +YN VL  L  A+      E+  +M      PN  T+N
Sbjct: 200 AVGLLRKLAFFGCEADIV----SYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFN 255

Query: 549 IMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLE 608
            +I        F+    +++ M   G  P    Y  +I  +   G  + A  +L+ +   
Sbjct: 256 TLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSY 315

Query: 609 GIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSA 668
           G+  +V+ YNT+LK  C   R    E ++ +M Q     D  T + +   +   G  +  
Sbjct: 316 GLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRV 375

Query: 669 MEALQ 673
           +E L+
Sbjct: 376 IELLE 380



 Score = 53.5 bits (127), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 70/152 (46%)

Query: 507 LGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASAL 566
           L T   N VL+++ E      A+ + +++   G   +  +YN ++    + + +     L
Sbjct: 179 LDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEEL 238

Query: 567 VSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE 626
           +  MVR    P  +T+  LI  L   G F+    +L  +S  G   D+ +Y TI+   C+
Sbjct: 239 MDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICK 298

Query: 627 KGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
           +G ++V   I+ +M    ++P+    + V  G
Sbjct: 299 EGHLEVANEILNRMPSYGLKPNVVCYNTVLKG 330



 Score = 46.6 bits (109), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 32/147 (21%), Positives = 64/147 (43%)

Query: 505 TPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSAS 564
            P    T+  V+  L        A+E+  +M   G  P    Y+++++       F+++ 
Sbjct: 107 VPPNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSV 166

Query: 565 ALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKA 624
            ++  M   G    T     ++  + + G  DEA+ LL  ++  G   D++ YN +LK  
Sbjct: 167 RVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGL 226

Query: 625 CEKGRIDVIEFIIEQMHQNKVQPDPST 651
           C   R   +E ++++M +    P+  T
Sbjct: 227 CMAKRWGDVEELMDEMVRVDCAPNIVT 253



 Score = 42.0 bits (97), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 27/142 (19%), Positives = 66/142 (46%), Gaps = 6/142 (4%)

Query: 510 PTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSM 569
           P Y+ +L +   +     ++ + + M   G   +    N++++      C   A  L+  
Sbjct: 147 PMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRK 206

Query: 570 MVRDGFYPQTMTYTALIKILL---DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE 626
           +   G     ++Y A++K L     +GD +E ++  ++V ++  P +++ +NT++   C 
Sbjct: 207 LAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMD--EMVRVDCAP-NIVTFNTLIGYLCR 263

Query: 627 KGRIDVIEFIIEQMHQNKVQPD 648
            G  + +  ++ QM ++   PD
Sbjct: 264 NGLFERVHEVLAQMSEHGCTPD 285


>gi|413952239|gb|AFW84888.1| hypothetical protein ZEAMMB73_407218 [Zea mays]
          Length = 668

 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 120/560 (21%), Positives = 222/560 (39%), Gaps = 87/560 (15%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y ++++A+CK    E+A  ++  +  + G  P +  YN  +    +   +  A   L+ +
Sbjct: 180 YTVLLEAMCKNSGFEQAMAVLDEMRAK-GCTPNIVTYNVIINGMCREGRVDDARDLLNRL 238

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSL-SIFSLRKFVWSFTRLRDL 243
            S     + V+YT LLK     K    V E++ + ++   + +  +    +  F R   +
Sbjct: 239 FSYGCQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMV 298

Query: 244 KSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHAC 303
           + A + LQ M              +E    ++     I +N+              I   
Sbjct: 299 ERAIQVLQQM--------------TEHECATNTTLCNIVINS--------------ICKQ 330

Query: 304 GRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQD 363
           GR  +   A + +  M S G  P + +Y   ++ +       +  E+LK M +NN  P +
Sbjct: 331 GRVDD---AFKFLNNMGSYGCNPDTISYTTVLKGLCRAERWNDAKELLKEMVRNNCPPNE 387

Query: 364 STIAT-LSVECSKALELDLAEALLDQISR--CT-NPKPFSAFLAACDTMDKPERAIKIFA 419
            T  T + + C K L ++ A  L++Q+    CT     ++A +         + A+++F 
Sbjct: 388 VTFNTFICILCQKGL-IEQAIMLIEQMQEHGCTVGVVTYNALVNGFCVQGHIDSALELFR 446

Query: 420 KMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHIS 479
            M    +P+  TY  L +   N                A+R++A                
Sbjct: 447 SM--PCKPNTITYTTLLTGLCN----------------AERLDA---------------- 472

Query: 480 MKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCG 539
                    A  ++ E++   C    P    T+N +++   +      A+E+ +QM   G
Sbjct: 473 ---------AAELVAEMLHRDC----PPNVVTFNVLVNFFCQKGFLDEAIELVEQMMEHG 519

Query: 540 IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEAL 599
             PN  TYN + D  +     + A  L+  +V  G  P  +T++++I IL      +EA+
Sbjct: 520 CTPNLITYNTLFDGITKDCSSEDALELLHGLVSKGVSPDVITFSSIIGILSKEDRVEEAI 579

Query: 600 NLLDLVSLEGIPHDVLLYNTILKKACEKGRID-VIEFIIEQMHQNKVQPDPSTCHFVFSG 658
            +  L    G+    L+YN IL   C++  ID  I+F +  M  N   P+ ST   +  G
Sbjct: 580 QMFHLAQDIGMRPKALVYNKILLGLCKRHEIDNAIDF-LAYMVSNGCMPNESTYIILIEG 638

Query: 659 YVNCGFHNSAMEALQVLSMR 678
               G    A + L +L  R
Sbjct: 639 LAREGLLKEAQDLLSMLCSR 658



 Score = 72.8 bits (177), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 84/373 (22%), Positives = 149/373 (39%), Gaps = 31/373 (8%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A  L+  M   G QP+  TY   + A+  + G    M VL  M+     P   T   +  
Sbjct: 161 ALSLLDDMLRRGCQPNVVTYTVLLEAMCKNSGFEQAMAVLDEMRAKGCTPNIVTYNVIIN 220

Query: 372 ECSKALELDLAEALLDQI-SRCTNPK--PFSAFLAACDTMDKPERAIKIFAKMRQK-LRP 427
              +   +D A  LL+++ S    P    ++  L       + +   ++FA+M +K   P
Sbjct: 221 GMCREGRVDDARDLLNRLFSYGCQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMP 280

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL 487
           +  T+++L   F         G M       +R   +   M  +    +      ++ ++
Sbjct: 281 NEVTFDMLIRFFC-------RGGM------VERAIQVLQQMTEHECATNTTLCNIVINSI 327

Query: 488 GAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNA 544
             +G + +  ++  +  +    P   +Y TVL  L  A+  + A E+ K+M     PPN 
Sbjct: 328 CKQGRVDDAFKFLNNMGSYGCNPDTISYTTVLKGLCRAERWNDAKELLKEMVRNNCPPNE 387

Query: 545 ATYNIMIDCCSIIRCFKS----ASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALN 600
            T+N  I     I C K     A  L+  M   G     +TY AL+      G  D AL 
Sbjct: 388 VTFNTFI----CILCQKGLIEQAIMLIEQMQEHGCTVGVVTYNALVNGFCVQGHIDSALE 443

Query: 601 LLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYV 660
           L    S+   P + + Y T+L   C   R+D    ++ +M      P+  T + + + + 
Sbjct: 444 LFR--SMPCKP-NTITYTTLLTGLCNAERLDAAAELVAEMLHRDCPPNVVTFNVLVNFFC 500

Query: 661 NCGFHNSAMEALQ 673
             GF + A+E ++
Sbjct: 501 QKGFLDEAIELVE 513



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 73/166 (43%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TY  ++  L +      A+ +   M   G  PN  TY ++++       F+ A A++  M
Sbjct: 144 TYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCKNSGFEQAMAVLDEM 203

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
              G  P  +TY  +I  +   G  D+A +LL+ +   G   D + Y T+LK  C   R 
Sbjct: 204 RAKGCTPNIVTYNVIINGMCREGRVDDARDLLNRLFSYGCQPDTVSYTTLLKGLCASKRW 263

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
           D +E +  +M +    P+  T   +   +   G    A++ LQ ++
Sbjct: 264 DDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLQQMT 309



 Score = 52.8 bits (125), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 103/489 (21%), Positives = 188/489 (38%), Gaps = 47/489 (9%)

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFL-GACAKL 171
           M  K    N   Y +++  +C+ G +++A +L+  L   YG  P    Y + L G CA  
Sbjct: 203 MRAKGCTPNIVTYNVIINGMCREGRVDDARDLLNRLFS-YGCQPDTVSYTTLLKGLCASK 261

Query: 172 HSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLR 231
                  L  ++M+   +  NEVT+  L++       +    ++ +   +H   +  +L 
Sbjct: 262 RWDDVEELFAEMMEKNCM-PNEVTFDMLIRFFCRGGMVERAIQVLQQMTEHECATNTTLC 320

Query: 232 KFVW-SFTRLRDLKSAYETLQHMVALAM-MGKLYINRTSEGRLRSSRLDIPIPL------ 283
             V  S  +   +  A++ L +M +       +      +G  R+ R +    L      
Sbjct: 321 NIVINSICKQGRVDDAFKFLNNMGSYGCNPDTISYTTVLKGLCRAERWNDAKELLKEMVR 380

Query: 284 NALPVMKVLRWSFSDVIHACGRTQNSGLAEQ---LMLQMQSLGLQPSSHTYDGFIRAIVS 340
           N  P  +V   +F  ++  C +    GL EQ   L+ QMQ  G      TY+  +     
Sbjct: 381 NNCPPNEVTFNTFICIL--CQK----GLIEQAIMLIEQMQEHGCTVGVVTYNALVNGFCV 434

Query: 341 DRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSA 400
              + + +E+ + M     KP   T  TL      A  LD A  L+ ++     P     
Sbjct: 435 QGHIDSALELFRSMP---CKPNTITYTTLLTGLCNAERLDAAAELVAEMLHRDCPPNVVT 491

Query: 401 FLAACDTMDKP---ERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVD 456
           F    +   +    + AI++  +M +    P++ TY  LF                    
Sbjct: 492 FNVLVNFFCQKGFLDEAIELVEQMMEHGCTPNLITYNTLFD---------------GITK 536

Query: 457 SAKRINAIEM--DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---T 511
                +A+E+   +    +    I+  +++  L  E  + E IQ F  ++     P    
Sbjct: 537 DCSSEDALELLHGLVSKGVSPDVITFSSIIGILSKEDRVEEAIQMFHLAQDIGMRPKALV 596

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           YN +L  L +  E   A++    M + G  PN +TY I+I+  +     K A  L+SM+ 
Sbjct: 597 YNKILLGLCKRHEIDNAIDFLAYMVSNGCMPNESTYIILIEGLAREGLLKEAQDLLSMLC 656

Query: 572 RDGFYPQTM 580
             G   + +
Sbjct: 657 SRGVVSKNL 665



 Score = 49.7 bits (117), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 36/161 (22%), Positives = 69/161 (42%), Gaps = 3/161 (1%)

Query: 515 VLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDG 574
           ++ +L     +  A  + +  +  G P +   YN ++          +A  L+  M    
Sbjct: 81  LIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLDAARRLIGSM---P 137

Query: 575 FYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIE 634
             P   TYT LI++L D G   +AL+LLD +   G   +V+ Y  +L+  C+    +   
Sbjct: 138 VAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCKNSGFEQAM 197

Query: 635 FIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
            ++++M      P+  T + + +G    G  + A + L  L
Sbjct: 198 AVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARDLLNRL 238



 Score = 42.0 bits (97), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 34/80 (42%), Gaps = 3/80 (3%)

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
           RDG  P     T LI+ L   G   +A  +L      G P DV  YNT++   C  G +D
Sbjct: 68  RDGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLD 127

Query: 632 VIEFIIEQMHQNKVQPDPST 651
               +I  M    V PD  T
Sbjct: 128 AARRLIGSM---PVAPDAYT 144


>gi|302757525|ref|XP_002962186.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
 gi|300170845|gb|EFJ37446.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
          Length = 855

 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 121/577 (20%), Positives = 219/577 (37%), Gaps = 66/577 (11%)

Query: 127 LMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDS 186
           +++  LCK   +++A  L   +    G  P +  YN+ +   A +  M  A    + M  
Sbjct: 25  IVLNGLCKARKIDKAIELFLEM-PSMGCEPTIVSYNTVISGLASIDKMDEAYKFFNSMID 83

Query: 187 RMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSA 246
                + + +T L+            H +    +K +   +F     +  + +  DL + 
Sbjct: 84  NGCEPDVIAFTTLIHGFCKAGQPQVGHMLLNQALKRFRPDVFLYTSVIHGYCKAGDLDTG 143

Query: 247 YETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRT 306
           ++ L+ M+A                         IP  A        +   D +   GR 
Sbjct: 144 FKILEEMLAAGC----------------------IPDAAA------YFVLIDPLCKLGRV 175

Query: 307 QNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKP----Q 362
                A +L  +M+  G      T+   I A+ +   L    E+ + M +   +P    Q
Sbjct: 176 DE---AYELFERMRKSGCLGDYVTFMTLIEALSNHGKLDEACELYREMIERGYEPYLEVQ 232

Query: 363 DSTIATLSVECSKALELDLAEALLDQI---SRCTNPKPFSAFLAACDTMDKPERAIKIFA 419
           DS I  L     KA ++D A  +   +      T+   +++ +     + + +  +K+  
Sbjct: 233 DSLIFALC----KAGKVDEANEIYQTVVAKKVATSRVAYNSLMDGYCKLGRVDDGLKLLL 288

Query: 420 KMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDS--------------AKRINAI 464
           +M +    PDI+TY +L + F   N   +   +F  + S                  +A 
Sbjct: 289 QMVECDNFPDIQTYNILVAGFSRANRLDDALELFKLLSSYGCKPNAATYTTIIQGLYDAQ 348

Query: 465 EMDMARNNIQHS--HISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSL 519
            M+ A+     +   IS   ++K L     I E  + F   KT   +P    Y  V+  L
Sbjct: 349 RMEEAKAFFDEALDVISYTTVIKGLADSKRIDEACELFEKLKTAGCSPNVVAYTAVIDGL 408

Query: 520 VEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQT 579
           ++A      ++ F+ M      P   TY ++ID     +    A  +   MV+ G  P T
Sbjct: 409 LKAGRIEDGLKNFEDMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDT 468

Query: 580 MTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQ 639
           +TYT LI         DEA  LLD++  +G     + Y +I+   C+   I+  + +I Q
Sbjct: 469 ITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQ 528

Query: 640 MHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
           M +   +P       + S Y++ G    A EA QVL+
Sbjct: 529 MRERGCEPGLFIFTSLLSYYLSKG---RAEEAYQVLT 562



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 121/617 (19%), Positives = 249/617 (40%), Gaps = 45/617 (7%)

Query: 108 ETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGA 167
           E ++ +  K++  +   Y  +M   CK G +++   L+  + E    +P +  YN  +  
Sbjct: 250 EIYQTVVAKKVATSRVAYNSLMDGYCKLGRVDDGLKLLLQMVECDN-FPDIQTYNILVAG 308

Query: 168 CAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSI 227
            ++ + +  A     L+ S     N  TYT +++     + +      +++     +L +
Sbjct: 309 FSRANRLDDALELFKLLSSYGCKPNAATYTTIIQGLYDAQRMEEAKAFFDE-----ALDV 363

Query: 228 FSLRKFVWSFTRLRDLKSAYETLQHM-VALAMMGKLYINRTSEGRLRSSRLDIPIP---- 282
            S    +      + +  A E  + +  A      +      +G L++ R++  +     
Sbjct: 364 ISYTTVIKGLADSKRIDEACELFEKLKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFED 423

Query: 283 ---LNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIV 339
               + +P     R +++ VI    + Q    A ++  QM   G  P + TY   I    
Sbjct: 424 MSGSSCVPT----RTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFS 479

Query: 340 SDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI-SRCTNPK-- 396
               +    ++L +M     +P   T  ++     K   ++ A+ ++ Q+  R   P   
Sbjct: 480 KASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLF 539

Query: 397 PFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQV 455
            F++ L+   +  + E A ++  +M  +   PD+  Y  L  L  +     E  ++F  +
Sbjct: 540 IFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSM 599

Query: 456 DSAKRINAIEMDMARNNIQHSHISMKNLLKA--LGAEGMIRELIQYFCDSKTPLGTP--T 511
                   IE   A + + +  I ++N  K   + A G I EL+     +K+ +G     
Sbjct: 600 --------IEKGCAPDALTYGTI-IQNFSKIGNVEAAGEILELM-----AKSGVGPDCFA 645

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALV---S 568
           YN+++   V+ +   +A  ++ +M   GI PNA T+N+++    + +  K+  A      
Sbjct: 646 YNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMH--GLFKDGKTDRAFSLFKE 703

Query: 569 MMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
           M+ +D   P  ++YT LI  L   G   EA +    +   GI  +   Y +++    + G
Sbjct: 704 MLEKDEVPPTLVSYTILIDGLGKAGRVSEAFSQFQEMIDRGIIPECHTYTSLIYSLAKAG 763

Query: 629 RIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLE 688
           RI   + ++E M +  V PD      + +G ++    ++A +  Q +  R       T +
Sbjct: 764 RIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYK 823

Query: 689 EKRSDFEDLILAEDSEA 705
             R  F     A D EA
Sbjct: 824 VLRRGFRAAGRALDLEA 840



 Score = 57.0 bits (136), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 72/343 (20%), Positives = 132/343 (38%), Gaps = 27/343 (7%)

Query: 344 LRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLA-EALLDQISRCTNPK--PFSA 400
           +   ++ LK M    L P       +     KA ++D A E  L+  S    P    ++ 
Sbjct: 1   MEEALDCLKEMHTTGLMPDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNT 60

Query: 401 FLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAK 459
            ++   ++DK + A K F  M      PD+  +  L   F     P     + +Q     
Sbjct: 61  VISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHMLLNQALKRF 120

Query: 460 RINAIEMDMARNNIQHSHISMKNL------LKALGAEGMIRELIQYFCDSKTPLGTPTYN 513
           R +         ++ H +    +L      L+ + A G I +   YF             
Sbjct: 121 RPDVF----LYTSVIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAYF------------- 163

Query: 514 TVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRD 573
            ++  L +      A E+F++M+  G   +  T+  +I+  S       A  L   M+  
Sbjct: 164 VLIDPLCKLGRVDEAYELFERMRKSGCLGDYVTFMTLIEALSNHGKLDEACELYREMIER 223

Query: 574 GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVI 633
           G+ P      +LI  L   G  DEA  +   V  + +    + YN+++   C+ GR+D  
Sbjct: 224 GYEPYLEVQDSLIFALCKAGKVDEANEIYQTVVAKKVATSRVAYNSLMDGYCKLGRVDDG 283

Query: 634 EFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
             ++ QM +    PD  T + + +G+      + A+E  ++LS
Sbjct: 284 LKLLLQMVECDNFPDIQTYNILVAGFSRANRLDDALELFKLLS 326



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 78/393 (19%), Positives = 148/393 (37%), Gaps = 58/393 (14%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ +I    +      A +L+  M + G +P++ TY   +        +    EV+  M
Sbjct: 470 TYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQM 529

Query: 355 QQNNLKPQDSTIATL-SVECSKALELDLAEALLDQISRCTNPKP--FSAFLAACDTMDKP 411
           ++   +P      +L S   SK    +  + L +  +R   P    +++ +    +  + 
Sbjct: 530 RERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRV 589

Query: 412 ERAIKIFAKMRQK-LRPDIRTYELL---FSLFGNVNAPYEEGNMFSQVDSAKRINAIEMD 467
             A  +F  M +K   PD  TY  +   FS  GNV A  E   + ++       + +  D
Sbjct: 590 PEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAK-------SGVGPD 642

Query: 468 -MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESH 526
             A N++   ++ ++ + +A G       +      S       T+N ++H L +  ++ 
Sbjct: 643 CFAYNSLMDGYVKLERVDQAFG-------VYDRMVASGIKPNAVTFNVLMHGLFKDGKTD 695

Query: 527 RAMEIFKQM-KTCGIPPNAATYNIMIDCCS--------------------IIRC------ 559
           RA  +FK+M +   +PP   +Y I+ID                       I  C      
Sbjct: 696 RAFSLFKEMLEKDEVPPTLVSYTILIDGLGKAGRVSEAFSQFQEMIDRGIIPECHTYTSL 755

Query: 560 ---------FKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGI 610
                       A  LV  MV+ G  P    Y+ALI  L+D    D A ++   +   G 
Sbjct: 756 IYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRGC 815

Query: 611 PHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
             + + Y  + +     GR   +E + +   Q 
Sbjct: 816 APNEVTYKVLRRGFRAAGRALDLEAVKQHFSQG 848


>gi|359479583|ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Vitis vinifera]
 gi|297735515|emb|CBI17955.3| unnamed protein product [Vitis vinifera]
          Length = 627

 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 81/351 (23%), Positives = 145/351 (41%), Gaps = 20/351 (5%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
            ++L L+M+  G+ P    Y   I  +           +   M    + P   T   L  
Sbjct: 257 GKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEGVHPNVVTFNVLID 316

Query: 372 ECSKALELDLAEALLD-QISRCTNPKPFS--AFLAACDTMDKPERAIKIFAKMRQK-LRP 427
              KA +++ A  LL   I R  +P  F+    +       + + A  +F  M  K +  
Sbjct: 317 ALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRIDDARDLFVSMESKGIET 376

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL 487
           D  +Y +L      +N   + G M   V++ K    +  +M    I  + I+   LL  L
Sbjct: 377 DAVSYNVL------INGYCKSGRM---VEAKK----LYREMMCKEIMPTVITYNTLLTGL 423

Query: 488 GAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNA 544
             EG +R+    F + K    TP   TYN +L  L +      AME+F  ++     P+ 
Sbjct: 424 FREGKVRDAWNLFGEMKVHDLTPESCTYNILLDGLCKNNHLSEAMELFHYLENHDFQPSI 483

Query: 545 ATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDL 604
             +N +ID     R  + A  L + +  +G  P  +TYT +I  L   G  + A +L   
Sbjct: 484 QIFNCLIDGLCKARKIEIARELFNRLSHEGLEPNVITYTVMIHGLCKSGQLENAKDLFLG 543

Query: 605 VSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFV 655
           +  +G   +++ +NT+++  C+   +  +  ++++M +    PD ST   V
Sbjct: 544 MEEKGCAPNLVTFNTLMRGFCQNDEMQKVVELLQEMAEKDFSPDASTISIV 594



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 82/173 (47%), Gaps = 4/173 (2%)

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           Y T++ SL +     +  E+F +MK  GI P+   Y+ +I        ++ A  L + MV
Sbjct: 241 YCTIIDSLCKDGLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMV 300

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
            +G +P  +T+  LI  L   G  +EA +LL L+   G   D   YNT++   C +GRID
Sbjct: 301 DEGVHPNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRID 360

Query: 632 VIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEV 684
               +   M    ++ D  + + + +GY   G     M   + L   M+C+E+
Sbjct: 361 DARDLFVSMESKGIETDAVSYNVLINGYCKSG----RMVEAKKLYREMMCKEI 409



 Score = 75.9 bits (185), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 76/347 (21%), Positives = 148/347 (42%), Gaps = 28/347 (8%)

Query: 326 PSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKAL-ELDLAEA 384
           P   +++  + A+   +   + + + K M    L P   T+  L + C   L ++D   A
Sbjct: 90  PPISSFNTLLGAVAKIKRYFDVISLYKRMSLIGLAPDFITLNIL-INCYCNLNKVDFGLA 148

Query: 385 LLDQISR---CTNPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFG 440
           +L ++ R     N   F++ +       +   A  +  KM R   RP++ TY  L     
Sbjct: 149 VLGEMLRRGHSPNTVTFTSLVKGLCLGSRISEATGLLRKMVRMGYRPNVVTYGTL----- 203

Query: 441 NVNAPYEEGNMFSQVDSAKRINAIEMDMARNN------IQHSHISMKNLLKALGAEGMIR 494
            +N     GN    V        +  +M   N      I+ + +    ++ +L  +G+I 
Sbjct: 204 -LNGLCMTGNTMLAV-------KLHEEMLNGNGGFGVTIKPNLVCYCTIIDSLCKDGLID 255

Query: 495 ELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI 551
           +  + F + K    +P    Y++++H +        A  +F +M   G+ PN  T+N++I
Sbjct: 256 KGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEGVHPNVVTFNVLI 315

Query: 552 DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIP 611
           D        + A+ L+ +M++ G  P T TY  LI      G  D+A +L   +  +GI 
Sbjct: 316 DALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRIDDARDLFVSMESKGIE 375

Query: 612 HDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
            D + YN ++   C+ GR+   + +  +M   ++ P   T + + +G
Sbjct: 376 TDAVSYNVLINGYCKSGRMVEAKKLYREMMCKEIMPTVITYNTLLTG 422



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 84/406 (20%), Positives = 166/406 (40%), Gaps = 26/406 (6%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQS------LGLQPSSHTYDGFIRAIVSDRGLRNGM 348
           ++  +++    T N+ LA +L  +M +      + ++P+   Y   I ++  D  +  G 
Sbjct: 199 TYGTLLNGLCMTGNTMLAVKLHEEMLNGNGGFGVTIKPNLVCYCTIIDSLCKDGLIDKGK 258

Query: 349 EVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPK--PFSAFLAAC 405
           E+   M+   + P     +++          + A+ L ++ +    +P    F+  + A 
Sbjct: 259 ELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEGVHPNVVTFNVLIDAL 318

Query: 406 DTMDKPERAIKIFAKMRQKLR-PDIRTYELL---FSLFGNVNAPYEEGNMFSQVDSAKRI 461
               K E A  +   M Q+   PD  TY  L   F L G ++   +  ++F  ++S    
Sbjct: 319 CKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRID---DARDLFVSMES---- 371

Query: 462 NAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVE 521
             IE D    N+  +        + + A+ + RE++   C    P    TYNT+L  L  
Sbjct: 372 KGIETDAVSYNVLINGYCKSG--RMVEAKKLYREMM---CKEIMPT-VITYNTLLTGLFR 425

Query: 522 AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMT 581
             +   A  +F +MK   + P + TYNI++D          A  L   +    F P    
Sbjct: 426 EGKVRDAWNLFGEMKVHDLTPESCTYNILLDGLCKNNHLSEAMELFHYLENHDFQPSIQI 485

Query: 582 YTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMH 641
           +  LI  L      + A  L + +S EG+  +V+ Y  ++   C+ G+++  + +   M 
Sbjct: 486 FNCLIDGLCKARKIEIARELFNRLSHEGLEPNVITYTVMIHGLCKSGQLENAKDLFLGME 545

Query: 642 QNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTL 687
           +    P+  T + +  G+         +E LQ ++ +    + ST+
Sbjct: 546 EKGCAPNLVTFNTLMRGFCQNDEMQKVVELLQEMAEKDFSPDASTI 591


>gi|42408236|dbj|BAD09393.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|125601932|gb|EAZ41257.1| hypothetical protein OsJ_25765 [Oryza sativa Japonica Group]
          Length = 798

 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 85/371 (22%), Positives = 146/371 (39%), Gaps = 30/371 (8%)

Query: 323 GLQPSSHTYDGFIRAIVSD-RGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDL 381
           G  P   +Y+  I  ++ + R L     +   M    L P   T  ++    SKA  +D 
Sbjct: 197 GYPPDVVSYNTVINGLLREGRQLDTAYHLFDQMLDQGLSPDVVTYNSIISALSKARAMDK 256

Query: 382 AEALLDQISR---CTNPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFS 437
           A  +L ++ +     N    ++ L    +  KP  AI +F +M R  + PD+ TY  L  
Sbjct: 257 AAVVLVRMVKNGAMPNRITHNSLLHGYCSSGKPNDAIGVFKRMCRDGVEPDVFTYNTLMG 316

Query: 438 LFGNVNAPYEEGNMF-SQVDSAKRINA----------------IEMD-----MARNNIQH 475
                    E   +F S V    + N+                ++M      M RN IQ 
Sbjct: 317 YLCKNGRSMEARKIFDSMVKRGHKPNSATYGTLLHGYATEGSLVKMHHLLDMMVRNGIQP 376

Query: 476 SHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIF 532
            H     L+      G + + +  F   +     P   TY  V+ +L    +   AM  F
Sbjct: 377 DHYIFNILIGTYTKHGKVDDAMLLFSKMRRQGLNPDTVTYGIVMDALCMVGKVDDAMAQF 436

Query: 533 KQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDY 592
            ++ + G+ P+A  +  +I        +  A  L   M+  G  P  + +  L+  L   
Sbjct: 437 GRLISEGLTPDAVVFRNLIHGLCARDKWDKAEELAVEMIGRGICPNNIFFNTLLNHLCKE 496

Query: 593 GDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTC 652
           G    A N+ DL+    +  DV+ YNT++   C  G++D    ++E M  + V+P+  T 
Sbjct: 497 GMVARAKNIFDLMVRVDVQRDVITYNTLIDGYCLHGKVDEAAKLLEGMVLDGVKPNEVTY 556

Query: 653 HFVFSGYVNCG 663
           + + +GY   G
Sbjct: 557 NTMINGYCKNG 567



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 125/289 (43%), Gaps = 36/289 (12%)

Query: 411 PERAIKIFAKM----RQKLRPDIRTY-------------ELLFSLFGNV--NAPYEEGNM 451
           P  AI +F +M    R K+ P++ TY             +L F+  G V  +    E   
Sbjct: 69  PAVAISLFRRMVMVARPKVPPNLITYSVVIDCCSRVGHLDLAFAALGRVIRSGWTAEAIT 128

Query: 452 FSQVDSA---KRINAIEMDMARN---------NIQHSHISMKNLLKALGAEGMIRELIQY 499
           FS +  A   K+  +  MD+A           N+    I +K L     ++  +  L   
Sbjct: 129 FSPLLKALCDKKRTSEAMDIALRRMPVLGCTPNVFSYTILLKGLCDENRSQQALHLLHTM 188

Query: 500 FCDSKTPLGTP----TYNTVLHSLV-EAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCC 554
                T  G P    +YNTV++ L+ E ++   A  +F QM   G+ P+  TYN +I   
Sbjct: 189 MVADDTRGGYPPDVVSYNTVINGLLREGRQLDTAYHLFDQMLDQGLSPDVVTYNSIISAL 248

Query: 555 SIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDV 614
           S  R    A+ ++  MV++G  P  +T+ +L+      G  ++A+ +   +  +G+  DV
Sbjct: 249 SKARAMDKAAVVLVRMVKNGAMPNRITHNSLLHGYCSSGKPNDAIGVFKRMCRDGVEPDV 308

Query: 615 LLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
             YNT++   C+ GR      I + M +   +P+ +T   +  GY   G
Sbjct: 309 FTYNTLMGYLCKNGRSMEARKIFDSMVKRGHKPNSATYGTLLHGYATEG 357



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 87/394 (22%), Positives = 149/394 (37%), Gaps = 31/394 (7%)

Query: 323 GLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLA 382
           G++P   TY+  +  +  +       ++   M +   KP  +T  TL    +    L   
Sbjct: 303 GVEPDVFTYNTLMGYLCKNGRSMEARKIFDSMVKRGHKPNSATYGTLLHGYATEGSLVKM 362

Query: 383 EALLDQISRCTNPKP----FSAFLAACDTMDKPERAIKIFAKMR-QKLRPDIRTYELLFS 437
             LLD + R    +P    F+  +       K + A+ +F+KMR Q L PD  TY ++  
Sbjct: 363 HHLLDMMVR-NGIQPDHYIFNILIGTYTKHGKVDDAMLLFSKMRRQGLNPDTVTYGIVMD 421

Query: 438 ---LFGNVN-APYEEGNMFSQV------------------DSAKRINAIEMDMARNNIQH 475
              + G V+ A  + G + S+                   D   +   + ++M    I  
Sbjct: 422 ALCMVGKVDDAMAQFGRLISEGLTPDAVVFRNLIHGLCARDKWDKAEELAVEMIGRGICP 481

Query: 476 SHISMKNLLKALGAEGMI---RELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIF 532
           ++I    LL  L  EGM+   + +              TYNT++       +   A ++ 
Sbjct: 482 NNIFFNTLLNHLCKEGMVARAKNIFDLMVRVDVQRDVITYNTLIDGYCLHGKVDEAAKLL 541

Query: 533 KQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDY 592
           + M   G+ PN  TYN MI+        + A +L   M   G  P  +TY+ +++ L   
Sbjct: 542 EGMVLDGVKPNEVTYNTMINGYCKNGRIEDAFSLFRQMASKGVNPGIVTYSTILQGLFQA 601

Query: 593 GDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTC 652
                A  L   +   GI  D+  YN IL   C+    D    I + ++      +  T 
Sbjct: 602 RRTAAAKELYLWMIKSGIKFDIGTYNIILLGLCQNNCTDDALRIFQNLYLIDFHLENRTF 661

Query: 653 HFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           + +    +  G H+ A +    L  R L   V T
Sbjct: 662 NIMIDALLKGGRHDEAKDLFASLLARGLVPNVVT 695



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 110/498 (22%), Positives = 193/498 (38%), Gaps = 45/498 (9%)

Query: 153 GIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLK--LAVWQKN-- 208
           G+ P +  YNS + A +K  +M  A + L  M       N +T+  LL    +  + N  
Sbjct: 233 GLSPDVVTYNSIISALSKARAMDKAAVVLVRMVKNGAMPNRITHNSLLHGYCSSGKPNDA 292

Query: 209 LSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETL---QHMVALAMMGKLYIN 265
           +     +  D ++    +  +L  ++    R  + +  ++++    H    A  G L   
Sbjct: 293 IGVFKRMCRDGVEPDVFTYNTLMGYLCKNGRSMEARKIFDSMVKRGHKPNSATYGTLLHG 352

Query: 266 RTSEGRLRSSR--LDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLML---QMQ 320
             +EG L      LD+ +     P      + F+ +I   G     G  +  ML   +M+
Sbjct: 353 YATEGSLVKMHHLLDMMVRNGIQPD----HYIFNILI---GTYTKHGKVDDAMLLFSKMR 405

Query: 321 SLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELD 380
             GL P + TY   + A+     + + M     +    L P       L        + D
Sbjct: 406 RQGLNPDTVTYGIVMDALCMVGKVDDAMAQFGRLISEGLTPDAVVFRNLIHGLCARDKWD 465

Query: 381 LAEAL-LDQISR--CTNPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELL- 435
            AE L ++ I R  C N   F+  L          RA  IF  M R  ++ D+ TY  L 
Sbjct: 466 KAEELAVEMIGRGICPNNIFFNTLLNHLCKEGMVARAKNIFDLMVRVDVQRDVITYNTLI 525

Query: 436 --FSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMI 493
             + L G V+            ++AK +  + +D  + N     ++   ++      G I
Sbjct: 526 DGYCLHGKVD------------EAAKLLEGMVLDGVKPN----EVTYNTMINGYCKNGRI 569

Query: 494 RELIQYF---CDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIM 550
            +    F          G  TY+T+L  L +A+ +  A E++  M   GI  +  TYNI+
Sbjct: 570 EDAFSLFRQMASKGVNPGIVTYSTILQGLFQARRTAAAKELYLWMIKSGIKFDIGTYNII 629

Query: 551 IDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGI 610
           +       C   A  +   +    F+ +  T+  +I  LL  G  DEA +L   +   G+
Sbjct: 630 LLGLCQNNCTDDALRIFQNLYLIDFHLENRTFNIMIDALLKGGRHDEAKDLFASLLARGL 689

Query: 611 PHDVLLYNTILKKACEKG 628
             +V+ Y  ++K   E+G
Sbjct: 690 VPNVVTYWLMMKSLIEQG 707



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 108/524 (20%), Positives = 196/524 (37%), Gaps = 82/524 (15%)

Query: 151 RYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLS 210
           R G+ P +  YN+ +G   K    + A    D M  R    N  TY  LL     + +L 
Sbjct: 301 RDGVEPDVFTYNTLMGYLCKNGRSMEARKIFDSMVKRGHKPNSATYGTLLHGYATEGSLV 360

Query: 211 AVHEIWEDYIK------HYSLSIF--------SLRKFVWSFTRLRDLKSAYETLQH---M 253
            +H + +  ++      HY  +I          +   +  F+++R      +T+ +   M
Sbjct: 361 KMHHLLDMMVRNGIQPDHYIFNILIGTYTKHGKVDDAMLLFSKMRRQGLNPDTVTYGIVM 420

Query: 254 VALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHA-CGRTQNSGLA 312
            AL M+GK+       GRL S  L         P   V R    ++IH  C R +    A
Sbjct: 421 DALCMVGKVDDAMAQFGRLISEGLT--------PDAVVFR----NLIHGLCARDKWDK-A 467

Query: 313 EQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVE 372
           E+L ++M   G+ P++  ++  +  +  +  +     +  +M + +++    T  TL   
Sbjct: 468 EELAVEMIGRGICPNNIFFNTLLNHLCKEGMVARAKNIFDLMVRVDVQRDVITYNTLIDG 527

Query: 373 CSKALELDLAEALLDQI---SRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPD 428
                ++D A  LL+ +       N   ++  +       + E A  +F +M  K + P 
Sbjct: 528 YCLHGKVDEAAKLLEGMVLDGVKPNEVTYNTMINGYCKNGRIEDAFSLFRQMASKGVNPG 587

Query: 429 IRTYE-LLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL 487
           I TY  +L  LF                  A+R  A                        
Sbjct: 588 IVTYSTILQGLF-----------------QARRTAA------------------------ 606

Query: 488 GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATY 547
                 +EL  +   S       TYN +L  L +   +  A+ IF+ +          T+
Sbjct: 607 -----AKELYLWMIKSGIKFDIGTYNIILLGLCQNNCTDDALRIFQNLYLIDFHLENRTF 661

Query: 548 NIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSL 607
           NIMID          A  L + ++  G  P  +TY  ++K L++ G  +E  +L   +  
Sbjct: 662 NIMIDALLKGGRHDEAKDLFASLLARGLVPNVVTYWLMMKSLIEQGLLEELDDLFLSLEK 721

Query: 608 EGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
            G   +  + N ++ K  +KG +      + ++ +N    + ST
Sbjct: 722 NGCTANSRMLNALVGKLLQKGEVRKAGVYLSKIDENNFSLEAST 765


>gi|15238562|ref|NP_200798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171023|sp|Q9FJE6.1|PP437_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g59900
 gi|9757911|dbj|BAB08358.1| unnamed protein product [Arabidopsis thaliana]
 gi|332009866|gb|AED97249.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 907

 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 116/563 (20%), Positives = 229/563 (40%), Gaps = 45/563 (7%)

Query: 128 MMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSR 187
           +++ L K G +EEA NL+  + + +G+ P L VYN+ + +  K      A L  D M   
Sbjct: 338 LVEGLRKRGKIEEALNLVKRVVD-FGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKI 396

Query: 188 MVGKNEVTYTELLKLAVWQKNL-SAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSA 246
            +  N+VTY+ L+ +   +  L +A+  + E       LS++     +    +  D+ +A
Sbjct: 397 GLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAA 456

Query: 247 YETLQHMV------ALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVI 300
              +  M+       +     L     S+G++  + L +   +    +   + ++F+ ++
Sbjct: 457 EGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKA-LRLYHEMTGKGIAPSI-YTFTTLL 514

Query: 301 HACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLK 360
               R      A +L  +M    ++P+  TY+  I     +  +    E LK M +  + 
Sbjct: 515 SGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIV 574

Query: 361 PQDSTIATLSVECSKALELDLAEALLDQISRCT---NPKPFSAFLAACDTMDKPERAIKI 417
           P   +   L        +   A+  +D + +     N   ++  L       K E A+ +
Sbjct: 575 PDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSV 634

Query: 418 FAKMRQK-LRPDIRTYELLFS----------LFGNVNAPYEEG------------NMFSQ 454
             +M Q+ +  D+  Y +L             FG +   ++ G            +  S+
Sbjct: 635 CQEMVQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEMHDRGLKPDDVIYTSMIDAKSK 694

Query: 455 VDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---- 510
               K    I   M       + ++   ++  L   G + E  +  C    P+ +     
Sbjct: 695 TGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNE-AEVLCSKMQPVSSVPNQV 753

Query: 511 TYNTVLHSLVEAQ-ESHRAMEIFKQMKTCGIPPNAATYNIMI-DCCSIIRCFKSASALVS 568
           TY   L  L + + +  +A+E+   +   G+  N ATYN++I   C   R  + AS L++
Sbjct: 754 TYGCFLDILTKGEVDMQKAVELHNAILK-GLLANTATYNMLIRGFCRQGR-IEEASELIT 811

Query: 569 MMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
            M+ DG  P  +TYT +I  L    D  +A+ L + ++ +GI  D + YNT++   C  G
Sbjct: 812 RMIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAG 871

Query: 629 RIDVIEFIIEQMHQNKVQPDPST 651
            +     +  +M +  + P+  T
Sbjct: 872 EMGKATELRNEMLRQGLIPNNKT 894



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 88/395 (22%), Positives = 148/395 (37%), Gaps = 80/395 (20%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           + S ++H   + ++ GLA +L   M S+G++P  + Y G IR++   + L    E++  M
Sbjct: 194 TLSALLHGLVKFRHFGLAMELFNDMVSVGIRPDVYIYTGVIRSLCELKDLSRAKEMIAHM 253

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERA 414
           +       D  I   +V             L+D +  C   K + A     D   K    
Sbjct: 254 EATGC---DVNIVPYNV-------------LIDGL--CKKQKVWEAVGIKKDLAGK---- 291

Query: 415 IKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM--DMARNN 472
                     L+PD+ TY  L      V   +E G              +EM  +M    
Sbjct: 292 ---------DLKPDVVTYCTLVYGLCKVQ-EFEIG--------------LEMMDEMLCLR 327

Query: 473 IQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIF 532
              S  ++ +L++ L   G I E                                A+ + 
Sbjct: 328 FSPSEAAVSSLVEGLRKRGKIEE--------------------------------ALNLV 355

Query: 533 KQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDY 592
           K++   G+ PN   YN +ID     R F  A  L   M + G  P  +TY+ LI +    
Sbjct: 356 KRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRR 415

Query: 593 GDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTC 652
           G  D AL+ L  +   G+   V  YN+++   C+ G I   E  + +M   K++P   T 
Sbjct: 416 GKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTY 475

Query: 653 HFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTL 687
             +  GY + G  N A+     ++ + +   + T 
Sbjct: 476 TSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTF 510


>gi|47497141|dbj|BAD19190.1| zinc finger (CCCH-type) protein-like [Oryza sativa Japonica Group]
 gi|47497588|dbj|BAD19658.1| zinc finger (CCCH-type) protein-like [Oryza sativa Japonica Group]
          Length = 462

 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 104/488 (21%), Positives = 184/488 (37%), Gaps = 86/488 (17%)

Query: 305 RTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDS 364
           R  +   AE +++    LGL P   TY+  + A     GL  G+ V+  M++  ++P   
Sbjct: 24  RGGSLAAAESVLVDAIRLGLPPDVVTYNTLLAAHCRAAGLEAGLVVMGRMREAGVEPDAV 83

Query: 365 TIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKM-RQ 423
           T                                +++ +A       P  A+ +F +M R 
Sbjct: 84  T--------------------------------YNSLIAGAARRGLPIHALDLFDEMLRS 111

Query: 424 KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNL 483
            + PD  +Y  L         P +   +F+             DMA   I     +   L
Sbjct: 112 GIAPDSWSYNPLMHCLFRSGHPEDAYRVFA-------------DMAEKGIAPCDTTYNTL 158

Query: 484 LKALGAEGMIR--------ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQM 535
           L     +GM R         + +Y   +  P+   TYNT+++ L  + +   A  + +++
Sbjct: 159 L-----DGMFRAGYAMNAYRMFRYLQRAGLPVSIVTYNTMINGLCSSGKVGYARMVLREL 213

Query: 536 KTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDF 595
                 PN  TY  ++ CC     F+        ++  G+      Y  +I  L+  G  
Sbjct: 214 GRTDHAPNIITYTAVMKCCFKYGRFEQGLDTFLSLLDRGYISDVYPYCTVISALVKKGRL 273

Query: 596 DEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFV 655
            EA N  DL+   G   D + YNT++   C++G++D    ++  M    ++ D  T   +
Sbjct: 274 GEANNYCDLMLQNGSRLDSVCYNTLIHMRCQEGKLDDAFELVSMMEDGGLESDEYTFAIL 333

Query: 656 FSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDFEDLILA----EDSEAESRILQ 711
            +G    G H  A E  Q+  M     E+  ++     +  L+ A    ++ +A  R+LQ
Sbjct: 334 VNGLCKMG-HIEAAEK-QLFYM-----EIKGMQSNVVAYNCLVDALCKFQEVDAAIRLLQ 386

Query: 712 FCEDSNENLAFTA-------------ALLQLRWCTIVGFPISWSLDRA--SGLEDSQTNS 756
            C    ++  +T+             A   LR C   G  +  S  RA  +GL  S   +
Sbjct: 387 -CMKLKDDFTYTSLVHGLCRVGRYHMASKFLRICLHEGNNVLASAKRAVIAGLRSSGFKN 445

Query: 757 NSRKQEIA 764
           + RK  +A
Sbjct: 446 DLRKVRVA 453



 Score = 47.0 bits (110), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 72/397 (18%), Positives = 148/397 (37%), Gaps = 65/397 (16%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           WS++ ++H   R+ +   A ++   M   G+ P   TY+  +  +       N   + + 
Sbjct: 118 WSYNPLMHCLFRSGHPEDAYRVFADMAEKGIAPCDTTYNTLLDGMFRAGYAMNAYRMFRY 177

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMD 409
           +Q+  L     T  T+      + ++  A  +L ++ R T+  P    ++A +  C    
Sbjct: 178 LQRAGLPVSIVTYNTMINGLCSSGKVGYARMVLRELGR-TDHAPNIITYTAVMKCCFKYG 236

Query: 410 KPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
           + E+ +  F  +  +               G ++  Y    + S +    R+        
Sbjct: 237 RFEQGLDTFLSLLDR---------------GYISDVYPYCTVISALVKKGRLGEA----- 276

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCD----SKTPLGTPTYNTVLHSLVEAQES 525
            NN                           +CD    + + L +  YNT++H   +  + 
Sbjct: 277 -NN---------------------------YCDLMLQNGSRLDSVCYNTLIHMRCQEGKL 308

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
             A E+   M+  G+  +  T+ I+++    +   ++A   +  M   G     + Y  L
Sbjct: 309 DDAFELVSMMEDGGLESDEYTFAILVNGLCKMGHIEAAEKQLFYMEIKGMQSNVVAYNCL 368

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVI-EFIIEQMHQ-N 643
           +  L  + + D A+ LL  + L+    D   Y +++   C  GR  +  +F+   +H+ N
Sbjct: 369 VDALCKFQEVDAAIRLLQCMKLK----DDFTYTSLVHGLCRVGRYHMASKFLRICLHEGN 424

Query: 644 KVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRML 680
            V    S    V +G  + GF N   +    L+M  L
Sbjct: 425 NVL--ASAKRAVIAGLRSSGFKNDLRKVRVALNMAKL 459



 Score = 45.1 bits (105), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 37/169 (21%), Positives = 63/169 (37%)

Query: 507 LGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASAL 566
           L T   N  L +L        A  +       G+PP+  TYN ++         ++   +
Sbjct: 10  LPTRLLNVCLAALCRGGSLAAAESVLVDAIRLGLPPDVVTYNTLLAAHCRAAGLEAGLVV 69

Query: 567 VSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE 626
           +  M   G  P  +TY +LI      G    AL+L D +   GI  D   YN ++     
Sbjct: 70  MGRMREAGVEPDAVTYNSLIAGAARRGLPIHALDLFDEMLRSGIAPDSWSYNPLMHCLFR 129

Query: 627 KGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
            G  +    +   M +  + P  +T + +  G    G+  +A    + L
Sbjct: 130 SGHPEDAYRVFADMAEKGIAPCDTTYNTLLDGMFRAGYAMNAYRMFRYL 178


>gi|357473123|ref|XP_003606846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355507901|gb|AES89043.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 624

 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 78/354 (22%), Positives = 147/354 (41%), Gaps = 20/354 (5%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A ++   M+   L+P  +TY+ FI  +  +R +     VL  + ++ L P   T   L  
Sbjct: 271 ASKIFKTMKDKNLKPDCYTYNSFISRLCKERRIEEASGVLCKLLESGLVPNAVTYNALID 330

Query: 372 ECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRP 427
            C    +LD A A  D++       +   ++  + A     + E A  +  +MR+K + P
Sbjct: 331 GCCNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMREKGVEP 390

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL 487
           D+ TY +             + N + +  +AK+  ++  +M   NI+ +  +  +L+   
Sbjct: 391 DVVTYNI-------------QINGYCRCGNAKKALSLFDEMVEKNIRPTVETYTSLIDVF 437

Query: 488 GAEGMIRELIQYFCDSKTPLGTPT---YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNA 544
           G    + E  + F  S      P    +N ++          RA ++ K+M    + P+ 
Sbjct: 438 GKRNRMSEAEEKFKKSIKEGMLPDIIMFNALIDGHCVNGNIDRAFQLLKEMDNAKVVPDE 497

Query: 545 ATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDL 604
            T+N ++      R  + A  L+  M   G  P  ++Y  LI      GD  +AL + D 
Sbjct: 498 VTFNTLMQGYCRERKVEEAKKLLDEMKERGIKPDHISYNTLISGYSKRGDMKDALEVFDE 557

Query: 605 VSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
           +   G    +L YN +++   + G  D  E ++ +M    + PD ST  +V   
Sbjct: 558 MLSLGFDPTLLTYNALIQGYSKIGEADHAEELLREMQSKGITPDDSTYLYVIEA 611



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/206 (28%), Positives = 96/206 (46%), Gaps = 3/206 (1%)

Query: 467 DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQ 523
           +M + NI+ S ++   ++  L  EG  ++   +    +     P   TYNTV++      
Sbjct: 207 EMVKMNIKSSIVTFNIMINILCREGKWKKAKDFIGHMEVYGVKPNVVTYNTVINGYCLRG 266

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
           +   A +IFK MK   + P+  TYN  I      R  + AS ++  ++  G  P  +TY 
Sbjct: 267 KFEAASKIFKTMKDKNLKPDCYTYNSFISRLCKERRIEEASGVLCKLLESGLVPNAVTYN 326

Query: 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
           ALI    + GD D+A    D +   GI   V  YN ++     + RI+  E +I++M + 
Sbjct: 327 ALIDGCCNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMREK 386

Query: 644 KVQPDPSTCHFVFSGYVNCGFHNSAM 669
            V+PD  T +   +GY  CG    A+
Sbjct: 387 GVEPDVVTYNIQINGYCRCGNAKKAL 412



 Score = 69.3 bits (168), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 75/388 (19%), Positives = 156/388 (40%), Gaps = 50/388 (12%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +F+ +I+   R      A+  +  M+  G++P+  TY+  I             ++ K M
Sbjct: 219 TFNIMINILCREGKWKKAKDFIGHMEVYGVKPNVVTYNTVINGYCLRGKFEAASKIFKTM 278

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQI---SRCTNPKPFSAFLAACDTMDKP 411
           +  NLKP   T  +      K   ++ A  +L ++       N   ++A +  C      
Sbjct: 279 KDKNLKPDCYTYNSFISRLCKERRIEEASGVLCKLLESGLVPNAVTYNALIDGCCNKGDL 338

Query: 412 ERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           ++A     +M  + +   + TY LL      ++A + E          KRI   E     
Sbjct: 339 DKAFAYRDEMMNRGIVASVFTYNLL------IHALFLE----------KRIEEAE----- 377

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAME 530
                      +++K +  +G+  +++             TYN  ++       + +A+ 
Sbjct: 378 -----------DMIKEMREKGVEPDVV-------------TYNIQINGYCRCGNAKKALS 413

Query: 531 IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590
           +F +M    I P   TY  +ID          A       +++G  P  + + ALI    
Sbjct: 414 LFDEMVEKNIRPTVETYTSLIDVFGKRNRMSEAEEKFKKSIKEGMLPDIIMFNALIDGHC 473

Query: 591 DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650
             G+ D A  LL  +    +  D + +NT+++  C + +++  + ++++M +  ++PD  
Sbjct: 474 VNGNIDRAFQLLKEMDNAKVVPDEVTFNTLMQGYCRERKVEEAKKLLDEMKERGIKPDHI 533

Query: 651 TCHFVFSGYVNCGFHNSAMEAL-QVLSM 677
           + + + SGY   G    A+E   ++LS+
Sbjct: 534 SYNTLISGYSKRGDMKDALEVFDEMLSL 561



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 89/447 (19%), Positives = 174/447 (38%), Gaps = 79/447 (17%)

Query: 127 LMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFL-GACAKLHSMVHANLCLDLMD 185
           +M+  LC+ G  ++A + I  + E YG+ P +  YN+ + G C +               
Sbjct: 222 IMINILCREGKWKKAKDFIGHM-EVYGVKPNVVTYNTVINGYCLR--------------- 265

Query: 186 SRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKS 245
               GK E                S + +  +D  K+     ++   F+    + R ++ 
Sbjct: 266 ----GKFEAA--------------SKIFKTMKD--KNLKPDCYTYNSFISRLCKERRIEE 305

Query: 246 AYETLQHMVALAMM-GKLYINRTSEGRLRSSRLDIPIP-----LNALPVMKVLRWSFSDV 299
           A   L  ++   ++   +  N   +G      LD         +N   V  V  ++   +
Sbjct: 306 ASGVLCKLLESGLVPNAVTYNALIDGCCNKGDLDKAFAYRDEMMNRGIVASVFTYNL--L 363

Query: 300 IHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNL 359
           IHA    +    AE ++ +M+  G++P   TY+  I         +  + +   M + N+
Sbjct: 364 IHALFLEKRIEEAEDMIKEMREKGVEPDVVTYNIQINGYCRCGNAKKALSLFDEMVEKNI 423

Query: 360 KPQDSTIATL---------SVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDK 410
           +P   T  +L           E  +  +  + E +L  I        F+A +        
Sbjct: 424 RPTVETYTSLIDVFGKRNRMSEAEEKFKKSIKEGMLPDIIM------FNALIDGHCVNGN 477

Query: 411 PERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
            +RA ++  +M   K+ PD  T+  L   +              +V+ AK++     +M 
Sbjct: 478 IDRAFQLLKEMDNAKVVPDEVTFNTLMQGYCRER----------KVEEAKKLLD---EMK 524

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLG-TP---TYNTVLHSLVEAQES 525
              I+  HIS   L+      G +++ ++ F D    LG  P   TYN ++    +  E+
Sbjct: 525 ERGIKPDHISYNTLISGYSKRGDMKDALEVF-DEMLSLGFDPTLLTYNALIQGYSKIGEA 583

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMID 552
             A E+ ++M++ GI P+ +TY  +I+
Sbjct: 584 DHAEELLREMQSKGITPDDSTYLYVIE 610



 Score = 45.8 bits (107), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 31/140 (22%), Positives = 64/140 (45%)

Query: 509 TPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVS 568
           T  ++ +L +  + ++   A+E    MK   I P   T N ++     +   K A  +  
Sbjct: 147 TLVFDLLLSAYCQFRKPDEALECLNLMKENEIIPKTETCNSLLSLLLKLNKIKMAWFVYE 206

Query: 569 MMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
            MV+       +T+  +I IL   G + +A + +  + + G+  +V+ YNT++   C +G
Sbjct: 207 EMVKMNIKSSIVTFNIMINILCREGKWKKAKDFIGHMEVYGVKPNVVTYNTVINGYCLRG 266

Query: 629 RIDVIEFIIEQMHQNKVQPD 648
           + +    I + M    ++PD
Sbjct: 267 KFEAASKIFKTMKDKNLKPD 286


>gi|357142605|ref|XP_003572629.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 543

 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 100/417 (23%), Positives = 165/417 (39%), Gaps = 39/417 (9%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ +++   R  N   A +++    S+   P + TY+  IRA+     + + + V   M
Sbjct: 130 TYNTMVNGYCRAGNIDAARRMI---DSVPFAPDTFTYNPLIRALCVRGCVLDALAVFDDM 186

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQI-SRCTNPKPFSAFL---AACDTMDK 410
                 P   T + L     K      A  LLD++ S+   P   +  +   A C   D 
Sbjct: 187 LHRGCSPSVVTYSILLDATCKESGYKQAVVLLDEMRSKGCEPDIVTYNVLINAMCSQGDV 246

Query: 411 PERAIKIFAKMRQ-KLRPDIRTY-----------------ELLFSLFGNVNAPYEEG--- 449
            E A+K+   +     +PD  TY                 +LL  +F N  AP E     
Sbjct: 247 GE-ALKVLNSLPSYGCKPDAVTYTPVLKSLCSSERWEEADKLLTKMFSNDCAPDEVTFNA 305

Query: 450 --NMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAE-------GMIRELIQYF 500
                 Q     R   +   M+ +      I+  +++  L  E        +++EL+   
Sbjct: 306 VITSLCQKGFVGRATKVLAQMSEHGCTPDIITYSSIMDGLCKERRVDEAIKLLKELLAEM 365

Query: 501 CDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRC- 559
                     T+NT++ SL +     RA+++  +M   G  P+  TYN ++D      C 
Sbjct: 366 VSKNCIPDQVTFNTIITSLCQKGLFDRAIKVVDEMSEHGCIPDITTYNCIVDGFLCKSCK 425

Query: 560 FKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNT 619
            + A  L+++MV +G  P T TY +L   L    + + A+ +   V   G+  D +LYN 
Sbjct: 426 TEEALDLLNLMVSNGLCPDTTTYKSLAFGLSREDEMERAIGMFRRVQAMGLSPDKMLYNA 485

Query: 620 ILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
           IL   C+K R D+       M  N   PD ST   +  G    GF   A E L  LS
Sbjct: 486 ILLGLCKKWRTDLAIDFFAYMVSNGCMPDESTYIILVEGIAYEGFLEEAKELLGNLS 542


>gi|242046162|ref|XP_002460952.1| hypothetical protein SORBIDRAFT_02g038080 [Sorghum bicolor]
 gi|241924329|gb|EER97473.1| hypothetical protein SORBIDRAFT_02g038080 [Sorghum bicolor]
          Length = 796

 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 79/326 (24%), Positives = 139/326 (42%), Gaps = 37/326 (11%)

Query: 395 PKP-FSAFLAACDTMDKPER---AIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEG 449
           P P  SA+ A      +  R   A+ +F +M    ++P + TY ++  ++  ++ P++E 
Sbjct: 181 PAPDASAYTALVSEFSRAGRFRDAVAVFRRMVDGGVQPALVTYNVVLHVYSKMSVPWKE- 239

Query: 450 NMFSQVDSAKRINAIEMD--------------------------MARNNIQHSHISMKNL 483
            +   VDS K  + IE+D                          M     +   ++  +L
Sbjct: 240 -VVVLVDSMKE-DGIELDRYTYNTLISCCRRRGLYREAAQMFDEMKAAGFEPDKVTFNSL 297

Query: 484 LKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGI 540
           L   G      E I      +    TP   TYN+++ + V+      A+E+ ++M+  G+
Sbjct: 298 LDVYGKARRHEEAIGVLKKMENAGCTPSVVTYNSLISAYVKDGLLEEALELKQEMEFRGM 357

Query: 541 PPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALN 600
            P+  TY  +I     I    +A A  S MVR+G  P   TY ALIK+    G F E + 
Sbjct: 358 KPDVVTYTTLISGLDRIGKIDAALATYSEMVRNGCSPNLCTYNALIKMHGVRGKFTEMMI 417

Query: 601 LLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYV 660
           + D +   G   DV+ +NT+L    + G    +  + ++M +    P+  T   + S Y 
Sbjct: 418 VFDDLRSAGYVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYS 477

Query: 661 NCGFHNSAMEALQVLSMRMLCEEVST 686
            CG  + AME  + +    +  ++ST
Sbjct: 478 RCGLFDQAMEIYKRMIEAGIYPDIST 503



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 77/359 (21%), Positives = 142/359 (39%), Gaps = 49/359 (13%)

Query: 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
           R++++ +I  C R      A Q+  +M++ G +P   T++  +      R     + VLK
Sbjct: 256 RYTYNTLISCCRRRGLYREAAQMFDEMKAAGFEPDKVTFNSLLDVYGKARRHEEAIGVLK 315

Query: 353 IMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPE 412
            M+     P   T  +L       +   + + LL                         E
Sbjct: 316 KMENAGCTPSVVTYNSL-------ISAYVKDGLL-------------------------E 343

Query: 413 RAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471
            A+++  +M  + ++PD+ TY  L S    +           ++D+A    A   +M RN
Sbjct: 344 EALELKQEMEFRGMKPDVVTYTTLISGLDRIG----------KIDAAL---ATYSEMVRN 390

Query: 472 NIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRA 528
               +  +   L+K  G  G   E++  F D ++    P   T+NT+L    +       
Sbjct: 391 GCSPNLCTYNALIKMHGVRGKFTEMMIVFDDLRSAGYVPDVVTWNTLLAVFGQNGLDSEV 450

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
             +FK+MK  G  P   TY  +I   S    F  A  +   M+  G YP   TY A++  
Sbjct: 451 SGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIYPDISTYNAVLSA 510

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
           L   G + +A  L   +       D L Y+++L       ++D ++ + E ++  +++P
Sbjct: 511 LARGGRWVQAEKLFAEMEDRDCKPDELSYSSLLHAYANAKKLDKMKALSEDIYAQRIEP 569



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 99/476 (20%), Positives = 188/476 (39%), Gaps = 47/476 (9%)

Query: 150 ERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNL 209
           E  G  P +  YNS + A  K   +  A      M+ R +  + VTYT L+        +
Sbjct: 318 ENAGCTPSVVTYNSLISAYVKDGLLEEALELKQEMEFRGMKPDVVTYTTLISGLDRIGKI 377

Query: 210 SAVHEIWEDYIKH--------YS--LSIFSLR-KFVWSFTRLRDLKSAY---ETLQHMVA 255
            A    + + +++        Y+  + +  +R KF        DL+SA    + +     
Sbjct: 378 DAALATYSEMVRNGCSPNLCTYNALIKMHGVRGKFTEMMIVFDDLRSAGYVPDVVTWNTL 437

Query: 256 LAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQL 315
           LA+ G+  ++    G  +  +    IP          R ++  +I +  R      A ++
Sbjct: 438 LAVFGQNGLDSEVSGVFKEMKKAGYIPE---------RDTYVSLISSYSRCGLFDQAMEI 488

Query: 316 MLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSK 375
             +M   G+ P   TY+  + A+          ++   M+  + KP + + ++L    + 
Sbjct: 489 YKRMIEAGIYPDISTYNAVLSALARGGRWVQAEKLFAEMEDRDCKPDELSYSSLLHAYAN 548

Query: 376 ALELDLAEALLDQI-SRCTNP-----KPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDI 429
           A +LD  +AL + I ++   P     K         +++ + E+A +   + R  L  DI
Sbjct: 549 AKKLDKMKALSEDIYAQRIEPHNWLVKTLVLVNNKVNSLSETEKAFQELRRRRCSL--DI 606

Query: 430 RTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGA 489
                + S++G             +    K++  +   M  N+I HS  +  +L+     
Sbjct: 607 NVLNAMVSIYG-------------KNKMVKKVEEVLTLMKENSINHSAATYNSLMHMYSR 653

Query: 490 EGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAAT 546
            G   +      + K+    P   +YNTV+++     +   A  +F +MK  G+ P+  T
Sbjct: 654 LGDCEKCEAILTEIKSSGMRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGVKPDIVT 713

Query: 547 YNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL 602
           YNI I        F+ A  LV  +V  G  P   TY ++++    +G   EA + L
Sbjct: 714 YNIFIKSYVANLMFEEAIDLVRYLVAQGCKPNERTYNSILEGYCRHGRMVEAKSFL 769



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 71/332 (21%), Positives = 134/332 (40%), Gaps = 50/332 (15%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +F+ ++   G+ +    A  ++ +M++ G  PS  TY+  I A V D  L   +E+ + M
Sbjct: 293 TFNSLLDVYGKARRHEEAIGVLKKMENAGCTPSVVTYNSLISAYVKDGLLEEALELKQEM 352

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERA 414
           +   +KP   T  TL                                ++  D + K + A
Sbjct: 353 EFRGMKPDVVTYTTL--------------------------------ISGLDRIGKIDAA 380

Query: 415 IKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNI 473
           +  +++M R    P++ TY  L  + G      E   +F  + SA  +  +         
Sbjct: 381 LATYSEMVRNGCSPNLCTYNALIKMHGVRGKFTEMMIVFDDLRSAGYVPDV--------- 431

Query: 474 QHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAME 530
               ++   LL   G  G+  E+   F + K     P   TY +++ S        +AME
Sbjct: 432 ----VTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDQAME 487

Query: 531 IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590
           I+K+M   GI P+ +TYN ++   +    +  A  L + M      P  ++Y++L+    
Sbjct: 488 IYKRMIEAGIYPDISTYNAVLSALARGGRWVQAEKLFAEMEDRDCKPDELSYSSLLHAYA 547

Query: 591 DYGDFDEALNLLDLVSLEGI-PHDVLLYNTIL 621
           +    D+   L + +  + I PH+ L+   +L
Sbjct: 548 NAKKLDKMKALSEDIYAQRIEPHNWLVKTLVL 579



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 114/575 (19%), Positives = 217/575 (37%), Gaps = 62/575 (10%)

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
           M+E  I L+   Y  ++    + G   EA+ +   + +  G  P    +NS L    K  
Sbjct: 247 MKEDGIELDRYTYNTLISCCRRRGLYREAAQMFDEM-KAAGFEPDKVTFNSLLDVYGKAR 305

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDY-IKHYSLSIFSLR 231
               A   L  M++     + VTY  L+   V    L    E+ ++   +     + +  
Sbjct: 306 RHEEAIGVLKKMENAGCTPSVVTYNSLISAYVKDGLLEEALELKQEMEFRGMKPDVVTYT 365

Query: 232 KFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKV 291
             +    R+  + +A  T   MV       L                     NAL  M  
Sbjct: 366 TLISGLDRIGKIDAALATYSEMVRNGCSPNL------------------CTYNALIKMHG 407

Query: 292 LRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGME-V 350
           +R  F++++              +   ++S G  P   T++  + A+    GL + +  V
Sbjct: 408 VRGKFTEMM-------------IVFDDLRSAGYVPDVVTWNTLL-AVFGQNGLDSEVSGV 453

Query: 351 LKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRC---TNPKPFSAFLAACDT 407
            K M++    P+  T  +L    S+    D A  +  ++       +   ++A L+A   
Sbjct: 454 FKEMKKAGYIPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIYPDISTYNAVLSALAR 513

Query: 408 MDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM 466
             +  +A K+FA+M  +  +PD  +Y  L   + N     ++    S+   A+RI     
Sbjct: 514 GGRWVQAEKLFAEMEDRDCKPDELSYSSLLHAYANAKK-LDKMKALSEDIYAQRIEP--- 569

Query: 467 DMARNNIQHSHISMKNLLKALG-AEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQES 525
               N +  + + + N + +L   E   +EL +  C     L     N ++    + +  
Sbjct: 570 ---HNWLVKTLVLVNNKVNSLSETEKAFQELRRRRCS----LDINVLNAMVSIYGKNKMV 622

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
            +  E+   MK   I  +AATYN ++   S +   +   A+++ +   G  P   +Y  +
Sbjct: 623 KKVEEVLTLMKENSINHSAATYNSLMHMYSRLGDCEKCEAILTEIKSSGMRPDRYSYNTV 682

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE----KGRIDVIEFIIEQMH 641
           I      G   EA  L   +   G+  D++ YN  +K        +  ID++ +++ Q  
Sbjct: 683 IYAYGRKGQMKEASRLFSEMKCSGVKPDIVTYNIFIKSYVANLMFEEAIDLVRYLVAQ-- 740

Query: 642 QNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
               +P+  T + +  GY     H   +EA   LS
Sbjct: 741 --GCKPNERTYNSILEGYCR---HGRMVEAKSFLS 770


>gi|294883698|ref|XP_002771030.1| pentatricopeptide repeat-containing protein, putative [Perkinsus
           marinus ATCC 50983]
 gi|239874236|gb|EER02846.1| pentatricopeptide repeat-containing protein, putative [Perkinsus
           marinus ATCC 50983]
          Length = 994

 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 91/380 (23%), Positives = 175/380 (46%), Gaps = 33/380 (8%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           SF+ V+    +  N   A + M +MQ  G  P+  TY+  + ++V  +  R   EV++ M
Sbjct: 289 SFNTVMKGHLKQGNMRQARKTMREMQEAGFPPNVITYNELLHSMVQGKDKRGIWEVVEEM 348

Query: 355 QQNNLKPQDSTIATLS---VECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKP 411
           + N L P   T + L       S A ++     L++++    +   FS+ + AC  + K 
Sbjct: 349 KANGLPPNKVTCSILLKALTSHSHASDVVRTMELVERMRGEMDEVLFSSVIEACIRIGK- 407

Query: 412 ERAIKIFA-KMRQKL-----RPDIRT-YELLFSLFGNVNAPYEEGNMFSQVDSAK---RI 461
              + I + K++Q +      P +   Y     L   + AP   G+M      AK   R+
Sbjct: 408 ---LDILSNKLQQYILVGSQGPMVGCRYTAGGGLVKGLTAP-TYGSMIKAYGHAKDLRRV 463

Query: 462 NAIEMDMARNNIQHSHISMKNLLKAL-------GAEGMIRELIQYFCDSKTPLGTPTYNT 514
            ++  +M +  ++ + I++  ++ AL        A  +I E++    D    + T  Y+T
Sbjct: 464 WSLWSEMRQRAVKPTAITLGCMVDALVTNRYPEDALSLIHEMLNT-PDCADCVNTIVYST 522

Query: 515 VLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDG 574
           VL     +++  R  +I+++M++  IP N  ++N ++D C+     +  S +   M   G
Sbjct: 523 VLKGFALSKQVDRVFDIYQEMRSNKIPLNTVSFNTIMDACARSGSMERVSDIFREMDEQG 582

Query: 575 FYPQTMTYTALIKILLDYGDFDEALNLL-DL--VSLEG----IPHDVLLYNTILKKACEK 627
             P  +TY+ ++K     GD D A ++L D+  VS  G       D ++YN++L    ++
Sbjct: 583 IEPDIITYSTVVKGYCLAGDVDTAFSVLRDMSGVSRRGGRKKFAPDEIMYNSLLDGCAKQ 642

Query: 628 GRIDVIEFIIEQMHQNKVQP 647
            R+D    ++++M  N V P
Sbjct: 643 HRVDQALQLLDEMRANGVAP 662



 Score = 48.9 bits (115), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 64/142 (45%), Gaps = 6/142 (4%)

Query: 90  FFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFL- 148
           F  I++ CARS     V + +R M+E+ I  +   Y  +++  C  G ++ A +++  + 
Sbjct: 555 FNTIMDACARSGSMERVSDIFREMDEQGIEPDIITYSTVVKGYCLAGDVDTAFSVLRDMS 614

Query: 149 -----GERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLA 203
                G R    P   +YNS L  CAK H +  A   LD M +  V  +  T + L+KL 
Sbjct: 615 GVSRRGGRKKFAPDEIMYNSLLDGCAKQHRVDQALQLLDEMRANGVAPSNYTLSILVKLL 674

Query: 204 VWQKNLSAVHEIWEDYIKHYSL 225
              + L     + ED    YS 
Sbjct: 675 GRARRLLEAFNMVEDLSTAYSF 696



 Score = 46.6 bits (109), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 108/531 (20%), Positives = 195/531 (36%), Gaps = 77/531 (14%)

Query: 161 YNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDY- 219
           +N+ +    K  +M  A   +  M       N +TY ELL   V  K+   + E+ E+  
Sbjct: 290 FNTVMKGHLKQGNMRQARKTMREMQEAGFPPNVITYNELLHSMVQGKDKRGIWEVVEEMK 349

Query: 220 ---IKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSR 276
              +    ++   L K + S +   D+    E ++ M     M ++  +   E  +R  +
Sbjct: 350 ANGLPPNKVTCSILLKALTSHSHASDVVRTMELVERM--RGEMDEVLFSSVIEACIRIGK 407

Query: 277 LDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIR 336
           LDI   L+      +L  S   ++  C  T   GL + L           ++ TY   I+
Sbjct: 408 LDI---LSNKLQQYILVGSQGPMV-GCRYTAGGGLVKGL-----------TAPTYGSMIK 452

Query: 337 AIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPK 396
           A    + LR    +   M+Q  +KP   T+              + +AL+      TN  
Sbjct: 453 AYGHAKDLRRVWSLWSEMRQRAVKPTAITLGC------------MVDALV------TNRY 494

Query: 397 PFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVD 456
           P  A     + ++ P+ A  +          +   Y  +   F           +  QVD
Sbjct: 495 PEDALSLIHEMLNTPDCADCV----------NTIVYSTVLKGFA----------LSKQVD 534

Query: 457 SAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYN 513
              R+  I  +M  N I  + +S   ++ A    G +  +   F +       P   TY+
Sbjct: 535 ---RVFDIYQEMRSNKIPLNTVSFNTIMDACARSGSMERVSDIFREMDEQGIEPDIITYS 591

Query: 514 TVLHSLVEAQESHRAMEIFKQMKTCG-------IPPNAATYNIMIDCCSIIRCFKSASAL 566
           TV+     A +   A  + + M             P+   YN ++D C+       A  L
Sbjct: 592 TVVKGYCLAGDVDTAFSVLRDMSGVSRRGGRKKFAPDEIMYNSLLDGCAKQHRVDQALQL 651

Query: 567 VSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL-DLVSLEGIPHDVLLYNTILKKAC 625
           +  M  +G  P   T + L+K+L       EA N++ DL +      +V +Y  +++   
Sbjct: 652 LDEMRANGVAPSNYTLSILVKLLGRARRLLEAFNMVEDLSTAYSFRANVHVYTCLIQACV 711

Query: 626 EKGRIDVIEFIIEQMHQN-KVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
              ++     + + M Q  +V PD  T   +  G   C + N    A +V+
Sbjct: 712 HNKQLQRAMKLHDAMIQEYRVDPDQKTYAVLARG---CIYSNQLEMAAKVV 759


>gi|22296415|dbj|BAC10183.1| pentatricopeptide repeat protein-like [Oryza sativa Japonica Group]
          Length = 624

 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 101/498 (20%), Positives = 215/498 (43%), Gaps = 63/498 (12%)

Query: 311 LAEQ---LMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIA 367
           LA+Q   L+  M+S G++    TY   IR +     +   +E++  M ++ ++P     +
Sbjct: 130 LADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYS 189

Query: 368 TL-SVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKM----R 422
           +L    C      D+ +  ++   +   P     +    D++ K  +A K    M    R
Sbjct: 190 SLLQGYCKSGRWEDVGKVFVEMSEKGIEPD-VVMYTGLIDSLCKVGKAKKAHGVMDMMVR 248

Query: 423 QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI--------------------N 462
           + L P++ TY +L      +N   +EG++   +   K++                    +
Sbjct: 249 RGLEPNVVTYNVL------INCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSD 302

Query: 463 AIEMDMA----------RNNIQHSHISMKNLLKALGAEGMIRELIQYFC---DSKTPLGT 509
            +EMD A          +N ++ + ++  ++++ L   G +R+  Q      ++   +  
Sbjct: 303 VLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNL 362

Query: 510 PTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSM 569
            TYN ++  L+   +  +AME+  +M + G+ P++ TY+I+I     +     A  L+S 
Sbjct: 363 VTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLST 422

Query: 570 MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
           M   G  P+   Y  L+  + + G  + A NL + +     P DV+ Y+T++  AC+ G 
Sbjct: 423 MRDRGIEPELFHYIPLLVAMCEQGMMERARNLFNEMD-NNFPLDVVAYSTMIHGACKAGD 481

Query: 630 IDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEE 689
           +   + +++ +    + PD  T   V + +   G   +A   L+ ++      +V+    
Sbjct: 482 LKTAKELLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAANGVLKQMTASGFLPDVAV--- 538

Query: 690 KRSDFEDLILAEDSEAE-SRILQFCEDS-NENLAFTAALLQLRWCTIV----GFPISWSL 743
               F+ LI    ++ E +++L+   +   +N+A  + ++     ++V    G  +  SL
Sbjct: 539 ----FDSLIQGYSTKGEINKVLELIREMITKNIALDSKIISTLSTSLVASNEGKALLQSL 594

Query: 744 DRASGLEDSQTNSNSRKQ 761
              S  E S+ N NS ++
Sbjct: 595 PDFSA-EISKGNINSPQE 611



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 86/378 (22%), Positives = 165/378 (43%), Gaps = 26/378 (6%)

Query: 283 LNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQ---SLGLQPSSHTYDGFIRAIV 339
           L+ALP ++    S++ V+ A  R  +   A  L+  M        +P++ +Y   +RA+ 
Sbjct: 68  LDALPSVRD-AVSYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSYTVLMRALC 126

Query: 340 SDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT---NPK 396
           +DR     + +L+ M+   ++    T  TL      A E+D A  L+ ++       N  
Sbjct: 127 ADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVV 186

Query: 397 PFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQV 455
            +S+ L       + E   K+F +M +K + PD+  Y  L              +   +V
Sbjct: 187 VYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLI-------------DSLCKV 233

Query: 456 DSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELI---QYFCDSKTPLGTPTY 512
             AK+ + +   M R  ++ + ++   L+  +  EG ++E I   +   +        TY
Sbjct: 234 GKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTY 293

Query: 513 NTVLHSLVEAQESHRAMEIFKQMKTCG--IPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           NT++  L +  E   AM + ++M      + PN  T+N +I     I   + A  + +MM
Sbjct: 294 NTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMM 353

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
              G     +TY  LI  LL      +A+ L+D ++  G+  D   Y+ ++K  C+  ++
Sbjct: 354 EETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQV 413

Query: 631 DVIEFIIEQMHQNKVQPD 648
           D  E ++  M    ++P+
Sbjct: 414 DRAEDLLSTMRDRGIEPE 431



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 84/362 (23%), Positives = 156/362 (43%), Gaps = 32/362 (8%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           ++ +I +  +   +  A  +M  M   GL+P+  TY+  I  +  +  ++  + VLK M 
Sbjct: 223 YTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMS 282

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTN-PKP----FSAFLAACDTMDK 410
           +  + P   T  TL    S  LE+D A  LL+++ R  N  KP    F++ +     + +
Sbjct: 283 EKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGR 342

Query: 411 PERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
             +A ++ A M +     ++ TY LL      V+   +   +  ++ S      +E D  
Sbjct: 343 MRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSL----GLEPDSF 398

Query: 470 RNNIQHSHI-------SMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEA 522
             +I              ++LL  +   G+  EL  Y      PL        L ++ E 
Sbjct: 399 TYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYI-----PL--------LVAMCEQ 445

Query: 523 QESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTY 582
               RA  +F +M     P +   Y+ MI         K+A  L+  +V +G  P  +TY
Sbjct: 446 GMMERARNLFNEMDN-NFPLDVVAYSTMIHGACKAGDLKTAKELLKSIVDEGLTPDAVTY 504

Query: 583 TALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID-VIEFIIEQMH 641
           + +I +    GD + A  +L  ++  G   DV +++++++    KG I+ V+E I E + 
Sbjct: 505 SIVINMFAKSGDMEAANGVLKQMTASGFLPDVAVFDSLIQGYSTKGEINKVLELIREMIT 564

Query: 642 QN 643
           +N
Sbjct: 565 KN 566



 Score = 54.3 bits (129), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/176 (18%), Positives = 82/176 (46%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           +Y  ++ +L   + + +A+ + + M++ G+  +  TY  +I           A  L+  M
Sbjct: 117 SYTVLMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEM 176

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
              G  P  + Y++L++     G +++   +   +S +GI  DV++Y  ++   C+ G+ 
Sbjct: 177 CESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKA 236

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
                +++ M +  ++P+  T + + +     G    A+  L+ +S + +  +V T
Sbjct: 237 KKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVT 292



 Score = 43.1 bits (100), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 21/87 (24%), Positives = 44/87 (50%)

Query: 577 PQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFI 636
           P  ++YT L++ L      D+A+ LL  +   G+  DV+ Y T+++  C+   +D    +
Sbjct: 113 PNAVSYTVLMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVEL 172

Query: 637 IEQMHQNKVQPDPSTCHFVFSGYVNCG 663
           + +M ++ ++P+      +  GY   G
Sbjct: 173 MGEMCESGIEPNVVVYSSLLQGYCKSG 199


>gi|147788022|emb|CAN69338.1| hypothetical protein VITISV_032632 [Vitis vinifera]
          Length = 585

 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 87/400 (21%), Positives = 155/400 (38%), Gaps = 20/400 (5%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           ++ + +I++       G A  ++ ++  LGLQP + T+   IR +  +  + + + +   
Sbjct: 103 YTLNILINSFCHLNRPGFAFSVLAKILKLGLQPDTATFTTLIRGLCVEGKIGDALHLFDK 162

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPER 413
           M     +P   T  TL     K    + A  LL  + +         + +  D++ K  +
Sbjct: 163 MIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQ 222

Query: 414 ---AIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
              A  +F+KM  Q + PDI TY  L     N+                K +  +   M 
Sbjct: 223 VTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLC-------------EWKHVTTLLNQMI 269

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESH 526
            + I    +    ++ AL  EG I E   ++             TYN ++       E  
Sbjct: 270 NSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMD 329

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
            A+++F  M   G  PN  +YN +I+    I+    A+ L   M +    P T+TY  L+
Sbjct: 330 EAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLM 389

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
             L   G   +A+ L   +   G   D+  Y  +L   C+K  +D    +++ +  + + 
Sbjct: 390 HGLCHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMD 449

Query: 647 PDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           PD      V  G    G   +A +    LS + L   V T
Sbjct: 450 PDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRT 489



 Score = 75.9 bits (185), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 83/399 (20%), Positives = 154/399 (38%), Gaps = 20/399 (5%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           ++  +I+   +  N+  A +L+  M+    QP    Y   I ++  DR +     +   M
Sbjct: 174 TYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKM 233

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERA 414
               + P   T  +L        E      LL+Q+           F    D + K  + 
Sbjct: 234 VGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKI 293

Query: 415 IK----IFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
            +    +   + + + P++ TY          NA  +   + S++D A ++      M  
Sbjct: 294 TEAHDVVDMMIIRGVEPNVVTY----------NALMDGHCLQSEMDEAVKVFDT---MVH 340

Query: 471 NNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHR 527
           N    + IS   L+        + +   L +  C  +    T TYNT++H L        
Sbjct: 341 NGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGLCHVGRLQD 400

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A+ +F +M   G  P+ ATY I++D          A AL+  +      P    YT +I 
Sbjct: 401 AIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVID 460

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
            +   G+ + A ++   +S +G+  +V  Y  ++   C +G +D    +  +M  N   P
Sbjct: 461 GMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCSP 520

Query: 648 DPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           D  T + +  G +       A++ LQ +  R    +VST
Sbjct: 521 DGCTYNTITQGLLQNKEALRAIQLLQEMLARGFSADVST 559



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 73/143 (51%)

Query: 506 PLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASA 565
           P  T  +N +L S+ + ++      +  QM + GIPP+  T NI+I+    +     A +
Sbjct: 64  PPSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTLNILINSFCHLNRPGFAFS 123

Query: 566 LVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKAC 625
           +++ +++ G  P T T+T LI+ L   G   +AL+L D +  EG   +V+ Y T++   C
Sbjct: 124 VLAKILKLGLQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLC 183

Query: 626 EKGRIDVIEFIIEQMHQNKVQPD 648
           + G  +    ++  M Q   QPD
Sbjct: 184 KVGNTNAAIRLLRSMEQGNCQPD 206



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 97/508 (19%), Positives = 178/508 (35%), Gaps = 84/508 (16%)

Query: 125 YLLMMQALCKGGYLEEASNLI-YFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDL 183
           +  +++ LC  G + +A +L    +GE  G  P +  Y + +    K+ +   A   L  
Sbjct: 140 FTTLIRGLCVEGKIGDALHLFDKMIGE--GFQPNVVTYGTLINGLCKVGNTNAAIRLLRS 197

Query: 184 MDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYSLSIFSLRKFVWSFTRLRD 242
           M+      + V YT ++      + ++    ++   + +  S  IF+    + S   L +
Sbjct: 198 MEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCE 257

Query: 243 LKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHA 302
            K     L  M+   +M  + I                               FS V+ A
Sbjct: 258 WKHVTTLLNQMINSKIMPDVVI-------------------------------FSTVVDA 286

Query: 303 CGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQ 362
             +      A  ++  M   G++P+  TY+  +        +   ++V   M  N   P 
Sbjct: 287 LCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPN 346

Query: 363 DSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKPERAIKIFA 419
             +  TL     K   +D A  L +++ +     N   ++  +     + + + AI +F 
Sbjct: 347 VISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGLCHVGRLQDAIALFH 406

Query: 420 KMRQKLR-PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHI 478
           +M    + PD+ TY +L                 S +D A         MA         
Sbjct: 407 EMVAHGQIPDLATYRILLDYLCKK----------SHLDEA---------MA--------- 438

Query: 479 SMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTC 538
               LLK +    M  ++               Y  V+  +  A E   A +IF  + + 
Sbjct: 439 ----LLKTIEGSNMDPDI-------------QIYTIVIDGMCRAGELEAARDIFSNLSSK 481

Query: 539 GIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEA 598
           G+ PN  TY IMI+          A+ L   M  +G  P   TY  + + LL   +   A
Sbjct: 482 GLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCSPDGCTYNTITQGLLQNKEALRA 541

Query: 599 LNLLDLVSLEGIPHDVLLYNTILKKACE 626
           + LL  +   G   DV     +++  C+
Sbjct: 542 IQLLQEMLARGFSADVSTTTLLVEMLCD 569


>gi|77556780|gb|ABA99576.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 696

 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 91/377 (24%), Positives = 165/377 (43%), Gaps = 50/377 (13%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTY----DGFIRAIVSDRGLRNGME 349
           ++++ ++H   R      A +L+ QM+  G++P+  TY    DGF  A   +   R    
Sbjct: 224 FTYNSLVHGVCRRGIVDEAVRLVRQMEGEGIRPNVFTYTMLVDGFCNAGRVEEAFR---- 279

Query: 350 VLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALL-DQISRCTNPKPFSAFLAACDTM 408
           +L  M++  + P ++T  TL     + LE D A  +L D +   T+  P     +AC TM
Sbjct: 280 MLDKMKEKGVAPSEATYRTLVHGVFRCLERDKAYRMLSDWLGHETSLHP-----SACHTM 334

Query: 409 -------DKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAP----YEEGNMFSQVDS 457
                  D  + A++   +M        R Y L  + FG V +      E  ++   +DS
Sbjct: 335 LYCLSKKDMAKEAVEFEKRM------SARGYLLDSTAFGIVMSCALKCLEVSDLCELLDS 388

Query: 458 AKRINAIEMDMARNNIQHSHISMKNLLKA---LG---AEGMIRELIQYFCDSKTPLGTPT 511
             +            +  S ++ KN  KA   LG    +G++  ++             +
Sbjct: 389 FIKNGGNPGFDVYIMVIKSLLNCKNFSKANHYLGHMVLKGLLSSVM-------------S 435

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           YN V+   V+A    +A EI K+M+  G  PN  T+N +I   S +    +A  ++ M++
Sbjct: 436 YNMVIDCFVKAGAVDKAEEIVKEMQDKGFLPNLVTFNTLISGYSKLGNVHNAKVVLKMLM 495

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
             GF P  +T+T+LI  L +    D+A    + ++  G+  +   YN ++   C  G ++
Sbjct: 496 EHGFMPDIITFTSLIDGLCNTHQLDDAFVCFEEMAEWGVRPNAQTYNVLMHTLCSAGHVN 555

Query: 632 VIEFIIEQMHQNKVQPD 648
               ++ +M  + V PD
Sbjct: 556 KAIDLLNKMKIDGVTPD 572



 Score = 66.2 bits (160), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 61/135 (45%)

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A E+F QM   G+ P+ A YN +I          +A      M  DG  P   TY +L+ 
Sbjct: 172 AHEVFVQMPRLGLRPSTAVYNALIAASVRAGAVDTAYLRFQQMPADGCRPDHFTYNSLVH 231

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
            +   G  DEA+ L+  +  EGI  +V  Y  ++   C  GR++    ++++M +  V P
Sbjct: 232 GVCRRGIVDEAVRLVRQMEGEGIRPNVFTYTMLVDGFCNAGRVEEAFRMLDKMKEKGVAP 291

Query: 648 DPSTCHFVFSGYVNC 662
             +T   +  G   C
Sbjct: 292 SEATYRTLVHGVFRC 306



 Score = 52.8 bits (125), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 104/496 (20%), Positives = 176/496 (35%), Gaps = 70/496 (14%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y  ++  +C+ G ++EA  L+  + E  GI P +  Y   +        +  A   LD M
Sbjct: 226 YNSLVHGVCRRGIVDEAVRLVRQM-EGEGIRPNVFTYTMLVDGFCNAGRVEEAFRMLDKM 284

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH-YSLSIFSLRKFVWSFTRLRDL 243
             + V  +E TY  L+            + +  D++ H  SL   +    ++  ++    
Sbjct: 285 KEKGVAPSEATYRTLVHGVFRCLERDKAYRMLSDWLGHETSLHPSACHTMLYCLSKKDMA 344

Query: 244 KSAYETLQHMVALAMMGKLYINRTSEGRLRSSRL------------DIPIPLNALPVMKV 291
           K A E  + M A   +    ++ T+ G + S  L            D  I     P   V
Sbjct: 345 KEAVEFEKRMSARGYL----LDSTAFGIVMSCALKCLEVSDLCELLDSFIKNGGNPGFDV 400

Query: 292 LRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVL 351
               +  VI +    +N   A   +  M   GL  S  +Y+  I   V    +    E++
Sbjct: 401 ----YIMVIKSLLNCKNFSKANHYLGHMVLKGLLSSVMSYNMVIDCFVKAGAVDKAEEIV 456

Query: 352 KIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKP 411
           K MQ     P   T  TL    SK   +  A+ +L  +                      
Sbjct: 457 KEMQDKGFLPNLVTFNTLISGYSKLGNVHNAKVVLKML---------------------- 494

Query: 412 ERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471
                    M     PDI T+  L     N +          Q+D A      E +MA  
Sbjct: 495 ---------MEHGFMPDIITFTSLIDGLCNTH----------QLDDA--FVCFE-EMAEW 532

Query: 472 NIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRA 528
            ++ +  +   L+  L + G + + I      K    TP   ++N ++ S    ++  +A
Sbjct: 533 GVRPNAQTYNVLMHTLCSAGHVNKAIDLLNKMKIDGVTPDAYSFNALILSFCRMRKVDKA 592

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGF-YPQTMTYTALIK 587
            +IF  M   G+ P++ TYN +I      R    A  ++    R G       +Y  ++ 
Sbjct: 593 EDIFNDMVRFGVVPDSYTYNSLIKALCDERRVNKAKEILFARERSGCSTSNNQSYWPIVA 652

Query: 588 ILLDYGDFDEALNLLD 603
            L   G F EA  L+D
Sbjct: 653 ALAKMGQFSEAGELMD 668



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 29/133 (21%), Positives = 55/133 (41%)

Query: 531 IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590
           +  +++ CG   +      +++    +   + A  +   M R G  P T  Y ALI   +
Sbjct: 140 LVAEVRGCGCEVSEELVCALVESWGRLGLARYAHEVFVQMPRLGLRPSTAVYNALIAASV 199

Query: 591 DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650
             G  D A      +  +G   D   YN+++   C +G +D    ++ QM    ++P+  
Sbjct: 200 RAGAVDTAYLRFQQMPADGCRPDHFTYNSLVHGVCRRGIVDEAVRLVRQMEGEGIRPNVF 259

Query: 651 TCHFVFSGYVNCG 663
           T   +  G+ N G
Sbjct: 260 TYTMLVDGFCNAG 272


>gi|296085490|emb|CBI29222.3| unnamed protein product [Vitis vinifera]
          Length = 826

 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 121/602 (20%), Positives = 229/602 (38%), Gaps = 92/602 (15%)

Query: 108 ETWRMMEEKEIGLNNKCYLL--MMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFL 165
           +++ + E    G++   YL    + A CKGG +E+A  L +F  E+ G+ P +  YN+ +
Sbjct: 230 KSYWVFETMRQGVSPDVYLFSTAINAFCKGGKVEDAIQL-FFDMEKLGVSPNVVTYNNLI 288

Query: 166 GACAKLHSMVHANLCLDLMDSRMVGKNEVTYT----ELLKLAVWQKNLSAVHEIWEDYIK 221
               K  ++  A    + M    V    +TY+     L+KL  + +  S + E  E   K
Sbjct: 289 HGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETLE---K 345

Query: 222 HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPI 281
            ++ +       +  + ++ +L  A      MV+        IN  S            +
Sbjct: 346 GFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKG------INPNS------------V 387

Query: 282 PLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSD 341
            LN+             +I    +      AE ++ +M S G   +   +   I  +  +
Sbjct: 388 TLNS-------------IIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMN 434

Query: 342 RGLRNGMEVLKIMQQNNLKPQDSTIATL-SVECSKALELDLAE----------------- 383
               + +  L+ M   N++P D  + TL    C +    D  E                 
Sbjct: 435 SRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTT 494

Query: 384 -ALLDQISRCTNPK-------------------PFSAFLAACDTMDKPERAIKIFAKM-R 422
            AL+  + +  N +                    ++  ++ C    K E   K+  +M +
Sbjct: 495 NALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVK 554

Query: 423 QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKN 482
           Q + PD  TY LL      +    E  N++++  S   +          N+    + +  
Sbjct: 555 QGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVP---------NVYTYGVMIDG 605

Query: 483 LLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPP 542
             KA   E    +L          L +  YNT++ +      +  A ++   M++ GIPP
Sbjct: 606 YCKADKIEEG-EKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPP 664

Query: 543 NAATYNIMI-DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNL 601
             ATY+ +I   C+I R  + A  L+  M ++G  P  + YTALI      G  D+ +N+
Sbjct: 665 TTATYSSLIHGMCNIGR-MEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNV 723

Query: 602 LDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVN 661
           L  +S   I  + + Y  ++    + G +     ++ +M    + PD  T + + +G+  
Sbjct: 724 LQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCK 783

Query: 662 CG 663
            G
Sbjct: 784 EG 785



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 63/333 (18%), Positives = 122/333 (36%), Gaps = 52/333 (15%)

Query: 343 GLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFL 402
           G RN + V + +    + P   T   L     KA EL                       
Sbjct: 192 GFRNAIGVFRFLANKGVFPTVKTCTFLLSSLVKANEL----------------------- 228

Query: 403 AACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRIN 462
                    E++  +F  MRQ + PD+  +    + F                   K  +
Sbjct: 229 ---------EKSYWVFETMRQGVSPDVYLFSTAINAF---------------CKGGKVED 264

Query: 463 AIEM--DMARNNIQHSHISMKNLLKALGAEGMIRELIQY---FCDSKTPLGTPTYNTVLH 517
           AI++  DM +  +  + ++  NL+  L   G + E  ++              TY+ +++
Sbjct: 265 AIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLIN 324

Query: 518 SLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYP 577
            L++ ++ + A  + K+    G  PN   YN +ID    +     A  +   MV  G  P
Sbjct: 325 GLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINP 384

Query: 578 QTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFII 637
            ++T  ++I+     G  ++A  +L+ +   G   +   + TI+   C   R +     +
Sbjct: 385 NSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFL 444

Query: 638 EQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAME 670
            +M    ++P+      +  G    G H+ A+E
Sbjct: 445 REMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVE 477



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 89/451 (19%), Positives = 169/451 (37%), Gaps = 68/451 (15%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           + FS  I+A  +      A QL   M+ LG+ P+  TY+  I  +     L       + 
Sbjct: 247 YLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEK 306

Query: 354 MQQNNLKPQDSTIATLSVECSKALELD-LAEALLDQISRCTNPKPFSAFLAACDTMDKPE 412
           M ++ +   ++T+ T SV  +  ++L+   EA  + + + T  K F+      +T+    
Sbjct: 307 MVKDGV---NATLITYSVLINGLMKLEKFNEA--NSVLKETLEKGFTPNEVVYNTL---- 357

Query: 413 RAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNN 472
             I  + KM                           GN+      A RI     DM    
Sbjct: 358 --IDGYCKM---------------------------GNL----GDALRIRG---DMVSKG 381

Query: 473 IQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAM 529
           I  + +++ ++++     G + +   +++        +    + T++H L        A+
Sbjct: 382 INPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESAL 441

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
              ++M    + PN      ++           A  L   ++  GF    +T  ALI  L
Sbjct: 442 RFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGL 501

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649
              G+  EA+ LL  +   G   D + YNT++   C++G+++    +  +M +  ++PD 
Sbjct: 502 CKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDT 561

Query: 650 STCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST-------------LEEKRSDFED 696
            T + +  G    G  + A+        R L   V T             +EE    F +
Sbjct: 562 FTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTE 621

Query: 697 LILAEDSEAESRILQ-----FCEDSNENLAF 722
           L L ++ E  S +       +C + N   AF
Sbjct: 622 L-LTQNLELNSVVYNTLIRAYCRNGNTVEAF 651


>gi|359485438|ref|XP_003633275.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 572

 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 84/378 (22%), Positives = 160/378 (42%), Gaps = 22/378 (5%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +F+ +I         G A QL  +M   G QP   TY   I  +         +  L+ M
Sbjct: 126 TFTTLIRGLCVEGKIGEALQLFDKMTGEGFQPDVLTYGTLINGLCKVGNTSTAIRFLRSM 185

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALL-DQISRCTNPKPF--SAFLAACDTMDKP 411
           +Q N +P     +T+     K  +L  A +L  D +++  +P  F  S+ +     +   
Sbjct: 186 EQRNCRPTVVVYSTIIDSLCKDRQLTEALSLFSDMLAKGISPNNFTYSSLIHGLCILGHW 245

Query: 412 ERAIKIF-AKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           + AI++F A + +K+ PD  T+  L      V+A  +EG     V  A  +  +   M +
Sbjct: 246 KEAIRLFYAMIHRKIMPDQLTFNTL------VDALCKEG----MVVKAHYVVDV---MIQ 292

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLG----TPTYNTVLHSLVEAQESH 526
           ++++   ++  +L+        + + +  F D+    G      +Y T+++   + Q   
Sbjct: 293 SDLKPDVVTYNSLMDGHCLRSEMGKTVNVF-DTMVRKGCVPSVISYTTLINGYCKIQIMD 351

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
           +AM +F++M   G+ P+  TYN +I     +   + A AL   MV  G  P  +TY  L 
Sbjct: 352 KAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVVYGQIPDLVTYRILF 411

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
             L       EA+ LL ++    +  D+ +Y+ ++   C  G ++    +  ++    + 
Sbjct: 412 DYLCKNHRLAEAMVLLKVIEGTNLDPDIHIYSIVMDGMCRAGELEAARDLFSKLSSKGLH 471

Query: 647 PDPSTCHFVFSGYVNCGF 664
           PD  T   + +G    G 
Sbjct: 472 PDVRTYTIMINGLCQQGL 489



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 63/263 (23%), Positives = 121/263 (46%), Gaps = 15/263 (5%)

Query: 410 KPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNA---PYEEGNMFSQVDSAKRIN---- 462
           +P  +I  F+K+   +   ++ Y  + SL+  +++   P+    +   ++S   +N    
Sbjct: 49  RPPPSIVDFSKLLTSI-TRMKHYSTVLSLYKQMDSFGIPHNTYTLNILINSFCHLNRLGF 107

Query: 463 --AIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLG----TPTYNTVL 516
             ++  D+ +   Q S  +   L++ L  EG I E +Q F D  T  G      TY T++
Sbjct: 108 AFSVLGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLF-DKMTGEGFQPDVLTYGTLI 166

Query: 517 HSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFY 576
           + L +   +  A+   + M+     P    Y+ +ID     R    A +L S M+  G  
Sbjct: 167 NGLCKVGNTSTAIRFLRSMEQRNCRPTVVVYSTIIDSLCKDRQLTEALSLFSDMLAKGIS 226

Query: 577 PQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFI 636
           P   TY++LI  L   G + EA+ L   +    I  D L +NT++   C++G +    ++
Sbjct: 227 PNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDALCKEGMVVKAHYV 286

Query: 637 IEQMHQNKVQPDPSTCHFVFSGY 659
           ++ M Q+ ++PD  T + +  G+
Sbjct: 287 VDVMIQSDLKPDVVTYNSLMDGH 309



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 69/326 (21%), Positives = 134/326 (41%), Gaps = 16/326 (4%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           +++S +IH      +   A +L   M    + P   T++  + A+  +  +     V+ +
Sbjct: 230 FTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDALCKEGMVVKAHYVVDV 289

Query: 354 MQQNNLKPQDSTIATL-SVECSKALELDLAEALLDQISR--CT-NPKPFSAFLAACDTMD 409
           M Q++LKP   T  +L    C ++ E+     + D + R  C  +   ++  +     + 
Sbjct: 290 MIQSDLKPDVVTYNSLMDGHCLRS-EMGKTVNVFDTMVRKGCVPSVISYTTLINGYCKIQ 348

Query: 410 KPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
             ++A+ +F +M Q+ L PD  TY  L     +V    +   +F ++    +I     D+
Sbjct: 349 IMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVVYGQIP----DL 404

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRA 528
               I   ++   + L    AE M+  L++    +        Y+ V+  +  A E   A
Sbjct: 405 VTYRILFDYLCKNHRL----AEAMV--LLKVIEGTNLDPDIHIYSIVMDGMCRAGELEAA 458

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
            ++F ++ + G+ P+  TY IMI+          AS L   M  +G  P   TY  + + 
Sbjct: 459 RDLFSKLSSKGLHPDVRTYTIMINGLCQQGLLAEASKLFGEMDENGCSPNACTYNLITRG 518

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDV 614
            L   +   A+ L   +   G   DV
Sbjct: 519 FLRNNETLRAIQLFQEMLSRGFSIDV 544



 Score = 46.2 bits (108), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 72/371 (19%), Positives = 138/371 (37%), Gaps = 78/371 (21%)

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
           M  K I  NN  Y  ++  LC  G+ +EA  L Y +  R  I P    +N+ + A  K  
Sbjct: 220 MLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHR-KIMPDQLTFNTLVDALCKEG 278

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSL-SIFSLR 231
            +V A+  +D+M    +  + VTY  L+     +  +     +++  ++   + S+ S  
Sbjct: 279 MVVKAHYVVDVMIQSDLKPDVVTYNSLMDGHCLRSEMGKTVNVFDTMVRKGCVPSVISYT 338

Query: 232 KFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKV 291
             +  + +++ +  A    + M             + +G +  +                
Sbjct: 339 TLINGYCKIQIMDKAMGLFEEM-------------SQQGLIPDT---------------- 369

Query: 292 LRWSFSDVIHA---CGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGM 348
              +++ +IH     GR ++   A  L  +M   G  P   TY      +  +  L   M
Sbjct: 370 --VTYNTLIHGLCHVGRLRD---AIALFHEMVVYGQIPDLVTYRILFDYLCKNHRLAEAM 424

Query: 349 EVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTM 408
            +LK+++  NL P                ++ +   ++D + R                 
Sbjct: 425 VLLKVIEGTNLDP----------------DIHIYSIVMDGMCRA---------------- 452

Query: 409 DKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVD------SAKRI 461
            + E A  +F+K+  K L PD+RTY ++ +         E   +F ++D      +A   
Sbjct: 453 GELEAARDLFSKLSSKGLHPDVRTYTIMINGLCQQGLLAEASKLFGEMDENGCSPNACTY 512

Query: 462 NAIEMDMARNN 472
           N I     RNN
Sbjct: 513 NLITRGFLRNN 523



 Score = 45.4 bits (106), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 34/156 (21%), Positives = 62/156 (39%), Gaps = 4/156 (2%)

Query: 506 PLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASA 565
           P  T T N +++S         A  +   +   G  P+ AT+  +I    +      A  
Sbjct: 86  PHNTYTLNILINSFCHLNRLGFAFSVLGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQ 145

Query: 566 LVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKAC 625
           L   M  +GF P  +TY  LI  L   G+   A+  L  +        V++Y+TI+   C
Sbjct: 146 LFDKMTGEGFQPDVLTYGTLINGLCKVGNTSTAIRFLRSMEQRNCRPTVVVYSTIIDSLC 205

Query: 626 EKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVN 661
           +  ++     +   M    + P+    +F +S  ++
Sbjct: 206 KDRQLTEALSLFSDMLAKGISPN----NFTYSSLIH 237



 Score = 43.9 bits (102), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 36/175 (20%), Positives = 70/175 (40%), Gaps = 35/175 (20%)

Query: 504 KTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSA 563
           + P     ++ +L S+   +     + ++KQM + GIP N  T NI+I+    +     A
Sbjct: 49  RPPPSIVDFSKLLTSITRMKHYSTVLSLYKQMDSFGIPHNTYTLNILINSFCHLNRLGFA 108

Query: 564 SALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKK 623
            +++  +++ G+ P T T+T LI+ L                                  
Sbjct: 109 FSVLGDILKLGYQPSTATFTTLIRGL---------------------------------- 134

Query: 624 ACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678
            C +G+I     + ++M     QPD  T   + +G    G  ++A+  L+ +  R
Sbjct: 135 -CVEGKIGEALQLFDKMTGEGFQPDVLTYGTLINGLCKVGNTSTAIRFLRSMEQR 188


>gi|115475728|ref|NP_001061460.1| Os08g0290000 [Oryza sativa Japonica Group]
 gi|38175588|dbj|BAD01297.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|38175668|dbj|BAD01373.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113623429|dbj|BAF23374.1| Os08g0290000 [Oryza sativa Japonica Group]
 gi|125602875|gb|EAZ42200.1| hypothetical protein OsJ_26764 [Oryza sativa Japonica Group]
          Length = 806

 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 114/534 (21%), Positives = 217/534 (40%), Gaps = 42/534 (7%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y ++M ALCK G +EEA  L   + E+ G+ P +  +   +   A+        + L  M
Sbjct: 259 YNVLMDALCKSGRVEEAFRLKGRM-EQGGMTPSVVTFGILINGLARGERFGEVGIVLQEM 317

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYSLSIFSLRKFVWSFTRLRDL 243
           +   V  NEV Y EL+     + + S    ++++ + K    +  +      +  +  ++
Sbjct: 318 EQLGVSPNEVIYNELIGWHCRKGHCSQALRLFDEMVLKKMKPTAVTYNLIAKALCKEGEM 377

Query: 244 KSAYETLQHMVALAMMGKLYINRTSEGRL--RSSRLDIPIPLNALPVMKVLRWSFSDVIH 301
           + A   L+ M+++ M     +  T    L  R+ RL+  + +    V + +R +   ++ 
Sbjct: 378 ERAERILEDMLSIGMTVHCGLFNTVVAWLLQRTRRLESVVSITNEMVTRGMRPN-DPLMT 436

Query: 302 ACGRTQNSGLAEQ----LMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQN 357
           AC R    G   Q    +  +  + GL  +  T +  I  +   + ++   +V++ M   
Sbjct: 437 ACMRELCKGGKHQEAVGIWFKTLNKGLGVNLATSNALIHGLCEGKYMKEATKVIQTMLNK 496

Query: 358 NLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDKPER 413
            ++    T   +   C K  +++ A  L   ++R    KP    F+  L A   + K E 
Sbjct: 497 GIELDSITYNIMIRGCCKDSKMEEAIKLHGDMTR-RGFKPDLFTFNTLLHAYCNLGKMEE 555

Query: 414 AIKIFAKMR-QKLRPDIRTY-----------------ELLFSLFGNVNAP----YEE--G 449
              +  +M+ + L+PDI +Y                 E L  L      P    Y    G
Sbjct: 556 TFHLLDQMKTEGLQPDIVSYGTIIDGHCKAKDIRKAKEYLTELMDRGLKPNVFIYNALIG 615

Query: 450 NMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSK---TP 506
                 D +  I+A+E  M  N IQ ++++  +L+  +   G++ E    F  ++     
Sbjct: 616 GYGRNGDISGAIDAVET-MKSNGIQPTNVTYGSLMYWMCHAGLVEEAKTIFSQARENNVD 674

Query: 507 LGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASAL 566
           LG   Y  ++    +  +   A+  F++M++ GI PN  TY  ++   S     + AS L
Sbjct: 675 LGVIGYTIMIQGYCKLGKMVEAVAYFEEMRSRGISPNKLTYTTLMYAYSKSGNSEEASKL 734

Query: 567 VSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTI 620
              MV  G  P  +TY  LI    +    D+ +     +S   +  D  +YN +
Sbjct: 735 FDEMVGSGVIPDNITYGTLIARCSEVNSLDKDIGHTAELSSGALTKDDRMYNIL 788



 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 98/461 (21%), Positives = 184/461 (39%), Gaps = 61/461 (13%)

Query: 255 ALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQ 314
           AL   G+L   R     +R SR    + LN         +S++ +I A  +        +
Sbjct: 194 ALVRAGQLDAAREVFDEMRESR---NVALN--------EYSYTAMIKALCKAGKVDAGFE 242

Query: 315 LMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECS 374
           ++ ++   GLQP+  TY+  + A+     +     +   M+Q  + P   T   L    +
Sbjct: 243 MLAELWRAGLQPTVVTYNVLMDALCKSGRVEEAFRLKGRMEQGGMTPSVVTFGILINGLA 302

Query: 375 KA---LELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMR-QKLRPDIR 430
           +     E+ +    ++Q+    N   ++  +          +A+++F +M  +K++P   
Sbjct: 303 RGERFGEVGIVLQEMEQLGVSPNEVIYNELIGWHCRKGHCSQALRLFDEMVLKKMKPTAV 362

Query: 431 TYELLFSLFGNVNAPYEEGNMFSQVDSAKRI-----------------NAIEMDMARNNI 473
           TY L+        A  +EG M    + A+RI                   +   + R   
Sbjct: 363 TYNLI------AKALCKEGEM----ERAERILEDMLSIGMTVHCGLFNTVVAWLLQRTRR 412

Query: 474 QHSHISMKNLLKALGAE-------GMIRELIQ----------YFCDSKTPLGT--PTYNT 514
             S +S+ N +   G           +REL +          +F      LG    T N 
Sbjct: 413 LESVVSITNEMVTRGMRPNDPLMTACMRELCKGGKHQEAVGIWFKTLNKGLGVNLATSNA 472

Query: 515 VLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDG 574
           ++H L E +    A ++ + M   GI  ++ TYNIMI  C      + A  L   M R G
Sbjct: 473 LIHGLCEGKYMKEATKVIQTMLNKGIELDSITYNIMIRGCCKDSKMEEAIKLHGDMTRRG 532

Query: 575 FYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIE 634
           F P   T+  L+    + G  +E  +LLD +  EG+  D++ Y TI+   C+   I   +
Sbjct: 533 FKPDLFTFNTLLHAYCNLGKMEETFHLLDQMKTEGLQPDIVSYGTIIDGHCKAKDIRKAK 592

Query: 635 FIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
             + ++    ++P+    + +  GY   G  + A++A++ +
Sbjct: 593 EYLTELMDRGLKPNVFIYNALIGGYGRNGDISGAIDAVETM 633



 Score = 65.9 bits (159), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 110/572 (19%), Positives = 201/572 (35%), Gaps = 88/572 (15%)

Query: 136 GYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM-DSRMVGKNEV 194
           G L  A++    L  R G  P +   N+FL A  +   +  A    D M +SR V  NE 
Sbjct: 164 GSLCRAADAFRVLSSR-GAPPSIKTCNAFLEALVRAGQLDAAREVFDEMRESRNVALNEY 222

Query: 195 TYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMV 254
           +YT ++K       + A  E+  +  +        L+  V ++  L D            
Sbjct: 223 SYTAMIKALCKAGKVDAGFEMLAELWRA------GLQPTVVTYNVLMD------------ 264

Query: 255 ALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQ 314
           AL   G++      +GR+    +   +             +F  +I+   R +  G    
Sbjct: 265 ALCKSGRVEEAFRLKGRMEQGGMTPSV------------VTFGILINGLARGERFGEVGI 312

Query: 315 LMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECS 374
           ++ +M+ LG+ P+   Y+  I            + +   M    +KP   T   ++    
Sbjct: 313 VLQEMEQLGVSPNEVIYNELIGWHCRKGHCSQALRLFDEMVLKKMKPTAVTYNLIAKALC 372

Query: 375 KALELDLAEALLD-----------------------------QISRCTNP------KPFS 399
           K  E++ AE +L+                              +   TN       +P  
Sbjct: 373 KEGEMERAERILEDMLSIGMTVHCGLFNTVVAWLLQRTRRLESVVSITNEMVTRGMRPND 432

Query: 400 AFLAACD----TMDKPERAIKI-FAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQ 454
             + AC        K + A+ I F  + + L  ++ T   L  + G     Y        
Sbjct: 433 PLMTACMRELCKGGKHQEAVGIWFKTLNKGLGVNLATSNAL--IHGLCEGKY-------- 482

Query: 455 VDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---T 511
               K    +   M    I+   I+   +++    +  + E I+   D       P   T
Sbjct: 483 ---MKEATKVIQTMLNKGIELDSITYNIMIRGCCKDSKMEEAIKLHGDMTRRGFKPDLFT 539

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           +NT+LH+     +      +  QMKT G+ P+  +Y  +ID     +  + A   ++ ++
Sbjct: 540 FNTLLHAYCNLGKMEETFHLLDQMKTEGLQPDIVSYGTIIDGHCKAKDIRKAKEYLTELM 599

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
             G  P    Y ALI      GD   A++ ++ +   GI    + Y +++   C  G ++
Sbjct: 600 DRGLKPNVFIYNALIGGYGRNGDISGAIDAVETMKSNGIQPTNVTYGSLMYWMCHAGLVE 659

Query: 632 VIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
             + I  Q  +N V         +  GY   G
Sbjct: 660 EAKTIFSQARENNVDLGVIGYTIMIQGYCKLG 691


>gi|302789998|ref|XP_002976767.1| hypothetical protein SELMODRAFT_105248 [Selaginella moellendorffii]
 gi|300155805|gb|EFJ22436.1| hypothetical protein SELMODRAFT_105248 [Selaginella moellendorffii]
          Length = 669

 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/295 (23%), Positives = 130/295 (44%), Gaps = 49/295 (16%)

Query: 378 ELDLAEALLDQIS-RCTNPK--PFSAFLAACDTMDKPERAIKIFAKMR-QKLRPDIRTYE 433
           +L+L+E L+++++ R   P    FS  +       +PE A+K F +M+ + + PD  TY 
Sbjct: 158 QLELSEKLVEEMTGRGIQPDNYTFSTLINCAKRCRQPEEALKWFERMKSEGIVPDEVTYN 217

Query: 434 LLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMI 493
            +  ++G V    E   ++ ++ S        ++   + + +  I+  N+    G    I
Sbjct: 218 SVIDMYGRVGRVNEAVELYEKLKS--------VNWKLDTVTYGAIA--NVYARAGDYQSI 267

Query: 494 RELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC 553
            +L+Q   DS +       NT++ +L +A + ++A ++F +M+T G+ P   T +I    
Sbjct: 268 MQLVQEMRDSGSSPNAVIMNTLMGTLSKAGKVNQAKKVFNEMRTSGVSPTPVTLSI---- 323

Query: 554 CSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHD 613
                       LV M  R G Y                   D+A  + + +  EG   D
Sbjct: 324 ------------LVEMYTRVGAY-------------------DQAFEVYETLKTEGWKCD 352

Query: 614 VLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSA 668
           V +YN+++K   E GR++  E I+++M +    PD  T     + Y   G  + A
Sbjct: 353 VAVYNSLMKACVEGGRVEQAEDILKEMKRAGCNPDHLTYRTAMNTYATKGMVDPA 407



 Score = 68.9 bits (167), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 78/165 (47%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           T++T+++     ++   A++ F++MK+ GI P+  TYN +ID    +     A  L   +
Sbjct: 180 TFSTLINCAKRCRQPEEALKWFERMKSEGIVPDEVTYNSVIDMYGRVGRVNEAVELYEKL 239

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
               +   T+TY A+  +    GD+   + L+  +   G   + ++ NT++    + G++
Sbjct: 240 KSVNWKLDTVTYGAIANVYARAGDYQSIMQLVQEMRDSGSSPNAVIMNTLMGTLSKAGKV 299

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
           +  + +  +M  + V P P T   +   Y   G ++ A E  + L
Sbjct: 300 NQAKKVFNEMRTSGVSPTPVTLSILVEMYTRVGAYDQAFEVYETL 344



 Score = 48.1 bits (113), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 57/131 (43%)

Query: 543 NAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL 602
           N  TYN+M+      R  + +  LV  M   G  P   T++ LI         +EAL   
Sbjct: 142 NRYTYNVMLKILRNGRQLELSEKLVEEMTGRGIQPDNYTFSTLINCAKRCRQPEEALKWF 201

Query: 603 DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNC 662
           + +  EGI  D + YN+++      GR++    + E++     + D  T   + + Y   
Sbjct: 202 ERMKSEGIVPDEVTYNSVIDMYGRVGRVNEAVELYEKLKSVNWKLDTVTYGAIANVYARA 261

Query: 663 GFHNSAMEALQ 673
           G + S M+ +Q
Sbjct: 262 GDYQSIMQLVQ 272



 Score = 43.1 bits (100), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 62/315 (19%), Positives = 120/315 (38%), Gaps = 51/315 (16%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           ++FS +I+   R +    A +   +M+S G+ P   TY+  I        +   +E+ + 
Sbjct: 179 YTFSTLINCAKRCRQPEEALKWFERMKSEGIVPDEVTYNSVIDMYGRVGRVNEAVELYEK 238

Query: 354 MQQNNLKPQDSTIATLSVECSKALE----LDLAEALLDQISRCTNPKPFSAFLAACDTMD 409
           ++  N K    T   ++   ++A +    + L + + D  S   N    +  +       
Sbjct: 239 LKSVNWKLDTVTYGAIANVYARAGDYQSIMQLVQEMRDSGS-SPNAVIMNTLMGTLSKAG 297

Query: 410 KPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
           K  +A K+F +MR   + P   T  +L  ++  V A Y++              A E   
Sbjct: 298 KVNQAKKVFNEMRTSGVSPTPVTLSILVEMYTRVGA-YDQ--------------AFE--- 339

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRA 528
                         + + L  EG       + CD         YN+++ + VE     +A
Sbjct: 340 --------------VYETLKTEG-------WKCD------VAVYNSLMKACVEGGRVEQA 372

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
            +I K+MK  G  P+  TY   ++  +       A  +   +V     P T  +T +I+ 
Sbjct: 373 EDILKEMKRAGCNPDHLTYRTAMNTYATKGMVDPARRMFDKVVALNGKPDTPLFTVMIRA 432

Query: 589 LLDYGDFDEALNLLD 603
               G+ ++A  + D
Sbjct: 433 CKLAGEIEQASKIFD 447


>gi|326510071|dbj|BAJ87252.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 825

 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 96/402 (23%), Positives = 158/402 (39%), Gaps = 67/402 (16%)

Query: 323 GLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLA 382
           G  P+  TY+  I A      L +    L  M++  L P   T   L +   +A  L  A
Sbjct: 85  GAPPNRCTYNTLINAHCKLALLADARAALVRMREAGLAPDTFTYNCLMLGLCRAGLLAAA 144

Query: 383 EALLDQISR----CTNPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFS 437
             L  Q+ R    C +   ++  +       + + A ++FAKM R   RP + TY +L  
Sbjct: 145 CGLFVQMPRRWGACYDRYSYTILIKGLCAAGRIDDACRVFAKMSRGWCRPGVHTYTVLLD 204

Query: 438 LFGNVNAPYEE----GNMFSQ--VDSAKRINAI------------------EMDMARNN- 472
               V    E     G M ++  V +    NA+                  +M++ R++ 
Sbjct: 205 GLCKVRRVGEAEALLGEMVNKGVVPNVVTYNALIGGLCQEGRFDDVTKLLEKMEIQRHSP 264

Query: 473 ------------IQHSHIS--MKNLLKALGAEGMIRELIQY------FC---DSKTPL-- 507
                        +H  +    K L +A+G +G+  E++ Y      +C   D K  L  
Sbjct: 265 DCWTYTQVVHGLCKHGKVGHGAKVLHEAIG-KGVALEVLTYNALINGYCKGGDMKAALDV 323

Query: 508 -----------GTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSI 556
                      G  T+N V+H      + H+AM    QM   G+ PN  T+N +I     
Sbjct: 324 LQLMKRNRVNPGVQTFNEVIHGFCCGGKVHKAMAFLTQMAGAGLSPNTVTFNSLISGQCS 383

Query: 557 IRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLL 616
           +   K A  L+ +M   G  P   TY   I  L D G  +EA +L   + ++GI    ++
Sbjct: 384 VGERKIALRLLDLMEEYGVLPDRQTYAIFIDALCDEGQLEEAHSLFSCLPMKGIKAHNVI 443

Query: 617 YNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
           Y +++   C+ G ID    ++E+M      PD  T + +  G
Sbjct: 444 YTSLVHGYCQVGDIDSAFGLMEKMASENCMPDVHTYNTLIDG 485



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 77/366 (21%), Positives = 158/366 (43%), Gaps = 20/366 (5%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           W+++ V+H   +    G   +++ +    G+     TY+  I        ++  ++VL++
Sbjct: 267 WTYTQVVHGLCKHGKVGHGAKVLHEAIGKGVALEVLTYNALINGYCKGGDMKAALDVLQL 326

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT---NPKPFSAFLAACDTMDK 410
           M++N + P   T   +        ++  A A L Q++      N   F++ ++   ++ +
Sbjct: 327 MKRNRVNPGVQTFNEVIHGFCCGGKVHKAMAFLTQMAGAGLSPNTVTFNSLISGQCSVGE 386

Query: 411 PERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
            + A+++   M +  + PD +TY +      +     E  ++FS +   K I A   ++ 
Sbjct: 387 RKIALRLLDLMEEYGVLPDRQTYAIFIDALCDEGQLEEAHSLFSCL-PMKGIKA--HNVI 443

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAM 529
             ++ H +  + ++  A G       L++            TYNT++  L + +   RA+
Sbjct: 444 YTSLVHGYCQVGDIDSAFG-------LMEKMASENCMPDVHTYNTLIDGLCKVKRLDRAI 496

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
           ++  +MK  GI P   T+NI+I      +    A+ +   M+  G  P   TYT  +KI 
Sbjct: 497 DLLDKMKKQGIEPTTCTFNILIKQMLWDKKHADAAKMYEQMISSGCKPDKQTYT--LKIS 554

Query: 590 LDYGDFDEALNLLDLVSLE----GIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
            D+ +       +D+  +E    G+  DV  YN I+K   + G  +   F   +M    +
Sbjct: 555 TDWFEGATKEENIDMAVVEMHEAGVFPDVETYNAIIKAYVDAGLKEKAFFAHVKMLSVPI 614

Query: 646 QPDPST 651
            PD +T
Sbjct: 615 DPDCTT 620



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 78/179 (43%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           +Y  ++  L  A     A  +F +M      P   TY +++D    +R    A AL+  M
Sbjct: 163 SYTILIKGLCAAGRIDDACRVFAKMSRGWCRPGVHTYTVLLDGLCKVRRVGEAEALLGEM 222

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           V  G  P  +TY ALI  L   G FD+   LL+ + ++    D   Y  ++   C+ G++
Sbjct: 223 VNKGVVPNVVTYNALIGGLCQEGRFDDVTKLLEKMEIQRHSPDCWTYTQVVHGLCKHGKV 282

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEE 689
                ++ +     V  +  T + + +GY   G   +A++ LQ++    +   V T  E
Sbjct: 283 GHGAKVLHEAIGKGVALEVLTYNALINGYCKGGDMKAALDVLQLMKRNRVNPGVQTFNE 341



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 94/231 (40%), Gaps = 12/231 (5%)

Query: 483 LLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCG 539
           L+K L A G I +  + F         P   TY  +L  L + +    A  +  +M   G
Sbjct: 167 LIKGLCAAGRIDDACRVFAKMSRGWCRPGVHTYTVLLDGLCKVRRVGEAEALLGEMVNKG 226

Query: 540 IPPNAATYNIMID-CCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEA 598
           + PN  TYN +I   C   R F   + L+  M      P   TYT ++  L  +G     
Sbjct: 227 VVPNVVTYNALIGGLCQEGR-FDDVTKLLEKMEIQRHSPDCWTYTQVVHGLCKHGKVGHG 285

Query: 599 LNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
             +L     +G+  +VL YN ++   C+ G +     +++ M +N+V P   T + V  G
Sbjct: 286 AKVLHEAIGKGVALEVLTYNALINGYCKGGDMKAALDVLQLMKRNRVNPGVQTFNEVIHG 345

Query: 659 YVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDFEDLILAEDSEAESRI 709
           +   G  + AM  L  ++   L     T       F  LI  + S  E +I
Sbjct: 346 FCCGGKVHKAMAFLTQMAGAGLSPNTVT-------FNSLISGQCSVGERKI 389



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 115/609 (18%), Positives = 230/609 (37%), Gaps = 95/609 (15%)

Query: 40  LTTTMGLNEESISKATQMQIVDALCR-GERSRASHLLLNLGHAHHSLGADDFFHILNYCA 98
           L   M +   S    T  Q+V  LC+ G+    + +L      H ++G      +L Y A
Sbjct: 253 LLEKMEIQRHSPDCWTYTQVVHGLCKHGKVGHGAKVL------HEAIGKGVALEVLTYNA 306

Query: 99  ------RSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERY 152
                 +  D    ++  ++M+   +    + +  ++   C GG + +A   +  +    
Sbjct: 307 LINGYCKGGDMKAALDVLQLMKRNRVNPGVQTFNEVIHGFCCGGKVHKAMAFLTQMAGA- 365

Query: 153 GIYPILPVYNSFL-GACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSA 211
           G+ P    +NS + G C+     +   L LDLM+   V  +  TY   +     +  L  
Sbjct: 366 GLSPNTVTFNSLISGQCSVGERKIALRL-LDLMEEYGVLPDRQTYAIFIDALCDEGQLEE 424

Query: 212 VHEIWE----DYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYI-NR 266
            H ++       IK +++   SL   V  + ++ D+ SA+  ++ M +   M  ++  N 
Sbjct: 425 AHSLFSCLPMKGIKAHNVIYTSL---VHGYCQVGDIDSAFGLMEKMASENCMPDVHTYNT 481

Query: 267 TSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQP 326
             +G  +  RLD  I                                 L+ +M+  G++P
Sbjct: 482 LIDGLCKVKRLDRAI--------------------------------DLLDKMKKQGIEP 509

Query: 327 SSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDST----IATLSVE-CSKALELDL 381
           ++ T++  I+ ++ D+   +  ++ + M  +  KP   T    I+T   E  +K   +D+
Sbjct: 510 TTCTFNILIKQMLWDKKHADAAKMYEQMISSGCKPDKQTYTLKISTDWFEGATKEENIDM 569

Query: 382 AEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFG 440
           A   + +     + + ++A + A       E+A     KM    + PD  TY +L +   
Sbjct: 570 AVVEMHEAGVFPDVETYNAIIKAYVDAGLKEKAFFAHVKMLSVPIDPDCTTYSILLNYMC 629

Query: 441 NVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYF 500
           N +                     + D   N      + ++NL          +EL +  
Sbjct: 630 NKD---------------------DSDAFDNEKIWKMVDVRNL----------QELFEQM 658

Query: 501 CDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCF 560
           C+S    G  TY  +L  L           +  +M+   I  +    + ++ C   +  +
Sbjct: 659 CESDAAPGISTYKALLRGLCNQCRLEEVEWLLLKMQGNSILLDEDMSDYLLGCYCNLEMY 718

Query: 561 KSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL-DLVSLEGIPHDVLLYNT 619
           + A      M    F P   +   L+  L D GD   A+++  D++ L G  +D +++  
Sbjct: 719 REACEQFRSMAHQSFQPGLKSCCLLLSGLCDSGDHGMAVSIFSDMLGL-GYNYDEVVWKL 777

Query: 620 ILKKACEKG 628
           ++    EKG
Sbjct: 778 LIDCLHEKG 786



 Score = 48.9 bits (115), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 42/177 (23%), Positives = 73/177 (41%), Gaps = 1/177 (0%)

Query: 503 SKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYN-IMIDCCSIIRCFK 561
           S  P    TYNT++++  +      A     +M+  G+ P+  TYN +M+  C       
Sbjct: 84  SGAPPNRCTYNTLINAHCKLALLADARAALVRMREAGLAPDTFTYNCLMLGLCRAGLLAA 143

Query: 562 SASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTIL 621
           +    V M  R G      +YT LIK L   G  D+A  +   +S       V  Y  +L
Sbjct: 144 ACGLFVQMPRRWGACYDRYSYTILIKGLCAAGRIDDACRVFAKMSRGWCRPGVHTYTVLL 203

Query: 622 KKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678
              C+  R+   E ++ +M    V P+  T + +  G    G  +   + L+ + ++
Sbjct: 204 DGLCKVRRVGEAEALLGEMVNKGVVPNVVTYNALIGGLCQEGRFDDVTKLLEKMEIQ 260



 Score = 44.7 bits (104), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 51/128 (39%), Gaps = 1/128 (0%)

Query: 532 FKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLD 591
           F  M   G PPN  TYN +I+    +     A A +  M   G  P T TY  L+  L  
Sbjct: 78  FGAMLKSGAPPNRCTYNTLINAHCKLALLADARAALVRMREAGLAPDTFTYNCLMLGLCR 137

Query: 592 YGDFDEALNL-LDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650
            G    A  L + +    G  +D   Y  ++K  C  GRID    +  +M +   +P   
Sbjct: 138 AGLLAAACGLFVQMPRRWGACYDRYSYTILIKGLCAAGRIDDACRVFAKMSRGWCRPGVH 197

Query: 651 TCHFVFSG 658
           T   +  G
Sbjct: 198 TYTVLLDG 205


>gi|115459104|ref|NP_001053152.1| Os04g0488500 [Oryza sativa Japonica Group]
 gi|113564723|dbj|BAF15066.1| Os04g0488500 [Oryza sativa Japonica Group]
          Length = 801

 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 84/353 (23%), Positives = 139/353 (39%), Gaps = 75/353 (21%)

Query: 308 NSGLAEQ---LMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDS 364
            +GL EQ   L  +M+S+G  P+  TY   I A +  + +    ++   M     +P D 
Sbjct: 335 KAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDV 394

Query: 365 TIATLSVECSKALELDLAEALLDQISRCTN-PKPFSAFLAACDTMDKPERAIKIFAKMRQ 423
           T                  AL+D + +  N  K F  +     T D  +       + R 
Sbjct: 395 TYG----------------ALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRH 438

Query: 424 KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNL 483
            L P++ TY  L                   VD   + + ++         H+H     L
Sbjct: 439 TLAPNVVTYGAL-------------------VDGLCKAHKVD---------HAH----EL 466

Query: 484 LKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPN 543
           L A+ + G     I              Y+ ++    +A +   A E+F QM  CG  P+
Sbjct: 467 LDAMLSSGCEPNHI-------------VYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPS 513

Query: 544 AATYNIMIDCCSIIRCFKS-----ASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEA 598
             TY  +ID     R FK      A  ++S M++D   P  +TYTA+I  L   G+ ++A
Sbjct: 514 VHTYTSLID-----RMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKA 568

Query: 599 LNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
           L LL L+  +G   +V+ Y  ++    + G+ID+   +  QM +    P+  T
Sbjct: 569 LKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVT 621



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 114/507 (22%), Positives = 198/507 (39%), Gaps = 63/507 (12%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y +++ + CK G +E+A  L   +    G  P +  Y + + A  K   +  AN     M
Sbjct: 326 YTILIDSFCKAGLIEQAQWLFEEM-RSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRM 384

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLK 244
                  N+VTY  L+       N+S   E+   Y K    S  +   F +       L 
Sbjct: 385 VDAGCRPNDVTYGALVDGLCKAGNISKAFEV---YAKLIGTSDSADSDFYFPCEDRHTLA 441

Query: 245 SAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWS--------F 296
               T   +V              +G  ++ ++D     +A  ++  +  S        +
Sbjct: 442 PNVVTYGALV--------------DGLCKAHKVD-----HAHELLDAMLSSGCEPNHIVY 482

Query: 297 SDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQ 356
             +I    +      A+++ LQM   G  PS HTY   I  +  D  L   M+VL  M +
Sbjct: 483 DALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLK 542

Query: 357 NNLKPQDSTIATLS------VECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDK 410
           ++  P   T   +        E  KAL+L    +L+++     N   ++A +       K
Sbjct: 543 DSCTPNVVTYTAMIDGLCRIGESEKALKL---LSLMEEKGCSPNVVTYTALIDGLGKAGK 599

Query: 411 PERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI-NAIEMDM 468
            + ++ +F +M R+   P+  TY +L      +N     G     +D A+ +   ++   
Sbjct: 600 IDLSLDLFTQMSRKGCSPNYVTYRVL------INHLCAAG----LLDKARLLLGEMKQTY 649

Query: 469 ARNNIQHSHISMKNLLKALGAE-GMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHR 527
               +Q    +++   K+  A  G++ E+  Y      P+  P Y  ++    +A     
Sbjct: 650 WPKYLQGYRCAIQGFSKSFIASLGILEEMESY---GTVPI-APVYGMLIDCFSKAGRLEI 705

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKS----ASALVSMMVRDGFYPQTMTYT 583
           AME+ K+M    +P +  T N M        C  S    A  L S M R GF P+   + 
Sbjct: 706 AMELHKEMME--VPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMTRRGFVPELSVFV 763

Query: 584 ALIKILLDYGDFDEALNLLDLVSLEGI 610
            LIK L++   +DEAL L   +  EG+
Sbjct: 764 CLIKGLVEVKKWDEALQLCYGICHEGV 790



 Score = 64.3 bits (155), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 76/417 (18%), Positives = 157/417 (37%), Gaps = 36/417 (8%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRN------GME 349
           F+ ++H+    ++   A +L+ +M + G  P    Y+ FI +I     L +        +
Sbjct: 180 FNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEK 239

Query: 350 VLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACD 406
           +   M   N       +A  +       + D A  L+ ++ R     +   +S  +    
Sbjct: 240 IYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLC 299

Query: 407 TMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIE 465
              K E+A  +F +M+   + PD+ TY +L   F       +   +F ++ S   +    
Sbjct: 300 HATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRS---VGCSP 356

Query: 466 MDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQES 525
             +    + H+++  K + +A        ++     D+       TY  ++  L +A   
Sbjct: 357 TVVTYTALIHAYLKAKQVPQA-------NDIFHRMVDAGCRPNDVTYGALVDGLCKAGNI 409

Query: 526 HRAMEIFKQMKTCG----------------IPPNAATYNIMIDCCSIIRCFKSASALVSM 569
            +A E++ ++                    + PN  TY  ++D          A  L+  
Sbjct: 410 SKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDA 469

Query: 570 MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
           M+  G  P  + Y ALI      G  D A  +   ++  G    V  Y +++ +  + GR
Sbjct: 470 MLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGR 529

Query: 630 IDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           +D+   ++ QM ++   P+  T   +  G    G    A++ L ++  +     V T
Sbjct: 530 LDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVT 586



 Score = 57.0 bits (136), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 77/317 (24%), Positives = 132/317 (41%), Gaps = 32/317 (10%)

Query: 328 SHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLD 387
           +H   G + A   D      M  L  M+ N+  P   T  TL     K  +L   + +++
Sbjct: 111 THMISGLMEASYFDEA----MSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIIN 166

Query: 388 QI-SRCTNPKP--FSAFL-AACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLF-SLFGN 441
            + +   NP P  F++ + + C+  D    A K+  +M      P    Y +   S+ G 
Sbjct: 167 MMMTEGCNPNPSLFNSLVHSYCNEKDYA-YAYKLLNRMTTCGCPPGYVVYNIFIGSICGQ 225

Query: 442 VNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEG-------MIR 494
              P  +      +D A++I     +M   N   + +++ N  + L   G       +I+
Sbjct: 226 EKLPSPD-----LLDLAEKIYG---EMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIK 277

Query: 495 ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCC 554
           E+++       P  T TY+ V+  L  A +  +A  +F++MK  G+ P+  TY I+ID  
Sbjct: 278 EMMR---KGFVP-DTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSF 333

Query: 555 SIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGI-PHD 613
                 + A  L   M   G  P  +TYTALI   L      +A ++   +   G  P+D
Sbjct: 334 CKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPND 393

Query: 614 VLLYNTILKKACEKGRI 630
           V  Y  ++   C+ G I
Sbjct: 394 V-TYGALVDGLCKAGNI 409



 Score = 42.4 bits (98), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 72/169 (42%), Gaps = 14/169 (8%)

Query: 502 DSKTPL-------GTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCC 554
           DS+ PL          TYN ++  L  A +      + K+M   G   +  T    + C 
Sbjct: 26  DSEDPLKDFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFT----VGCF 81

Query: 555 SIIRCFKS--ASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPH 612
           +   C +   A AL  M+ R+ F   T+  T +I  L++   FDEA++ L  +       
Sbjct: 82  AHALCKEGRWADAL-DMIEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIP 140

Query: 613 DVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVN 661
           +V+ Y T+L    +K ++   + II  M      P+PS  + +   Y N
Sbjct: 141 NVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCN 189


>gi|38344241|emb|CAE02059.2| OJ991113_30.18 [Oryza sativa Japonica Group]
          Length = 736

 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 84/353 (23%), Positives = 139/353 (39%), Gaps = 75/353 (21%)

Query: 308 NSGLAEQ---LMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDS 364
            +GL EQ   L  +M+S+G  P+  TY   I A +  + +    ++   M     +P D 
Sbjct: 270 KAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDV 329

Query: 365 TIATLSVECSKALELDLAEALLDQISRCTN-PKPFSAFLAACDTMDKPERAIKIFAKMRQ 423
           T                  AL+D + +  N  K F  +     T D  +       + R 
Sbjct: 330 TYG----------------ALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRH 373

Query: 424 KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNL 483
            L P++ TY  L                   VD   + + ++         H+H     L
Sbjct: 374 TLAPNVVTYGAL-------------------VDGLCKAHKVD---------HAH----EL 401

Query: 484 LKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPN 543
           L A+ + G     I              Y+ ++    +A +   A E+F QM  CG  P+
Sbjct: 402 LDAMLSSGCEPNHI-------------VYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPS 448

Query: 544 AATYNIMIDCCSIIRCFKS-----ASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEA 598
             TY  +ID     R FK      A  ++S M++D   P  +TYTA+I  L   G+ ++A
Sbjct: 449 VHTYTSLID-----RMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKA 503

Query: 599 LNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
           L LL L+  +G   +V+ Y  ++    + G+ID+   +  QM +    P+  T
Sbjct: 504 LKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVT 556



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 114/507 (22%), Positives = 198/507 (39%), Gaps = 63/507 (12%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y +++ + CK G +E+A  L   +    G  P +  Y + + A  K   +  AN     M
Sbjct: 261 YTILIDSFCKAGLIEQAQWLFEEM-RSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRM 319

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLK 244
                  N+VTY  L+       N+S   E+   Y K    S  +   F +       L 
Sbjct: 320 VDAGCRPNDVTYGALVDGLCKAGNISKAFEV---YAKLIGTSDSADSDFYFPCEDRHTLA 376

Query: 245 SAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWS--------F 296
               T   +V              +G  ++ ++D     +A  ++  +  S        +
Sbjct: 377 PNVVTYGALV--------------DGLCKAHKVD-----HAHELLDAMLSSGCEPNHIVY 417

Query: 297 SDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQ 356
             +I    +      A+++ LQM   G  PS HTY   I  +  D  L   M+VL  M +
Sbjct: 418 DALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLK 477

Query: 357 NNLKPQDSTIATLS------VECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDK 410
           ++  P   T   +        E  KAL+L    +L+++     N   ++A +       K
Sbjct: 478 DSCTPNVVTYTAMIDGLCRIGESEKALKL---LSLMEEKGCSPNVVTYTALIDGLGKAGK 534

Query: 411 PERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI-NAIEMDM 468
            + ++ +F +M R+   P+  TY +L      +N     G     +D A+ +   ++   
Sbjct: 535 IDLSLDLFTQMSRKGCSPNYVTYRVL------INHLCAAG----LLDKARLLLGEMKQTY 584

Query: 469 ARNNIQHSHISMKNLLKALGAE-GMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHR 527
               +Q    +++   K+  A  G++ E+  Y      P+  P Y  ++    +A     
Sbjct: 585 WPKYLQGYRCAIQGFSKSFIASLGILEEMESY---GTVPI-APVYGMLIDCFSKAGRLEI 640

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKS----ASALVSMMVRDGFYPQTMTYT 583
           AME+ K+M    +P +  T N M        C  S    A  L S M R GF P+   + 
Sbjct: 641 AMELHKEMME--VPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMTRRGFVPELSVFV 698

Query: 584 ALIKILLDYGDFDEALNLLDLVSLEGI 610
            LIK L++   +DEAL L   +  EG+
Sbjct: 699 CLIKGLVEVKKWDEALQLCYGICHEGV 725



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 76/417 (18%), Positives = 157/417 (37%), Gaps = 36/417 (8%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRN------GME 349
           F+ ++H+    ++   A +L+ +M + G  P    Y+ FI +I     L +        +
Sbjct: 115 FNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEK 174

Query: 350 VLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACD 406
           +   M   N       +A  +       + D A  L+ ++ R     +   +S  +    
Sbjct: 175 IYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLC 234

Query: 407 TMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIE 465
              K E+A  +F +M+   + PD+ TY +L   F       +   +F ++ S   +    
Sbjct: 235 HATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRS---VGCSP 291

Query: 466 MDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQES 525
             +    + H+++  K + +A        ++     D+       TY  ++  L +A   
Sbjct: 292 TVVTYTALIHAYLKAKQVPQA-------NDIFHRMVDAGCRPNDVTYGALVDGLCKAGNI 344

Query: 526 HRAMEIFKQMKTCG----------------IPPNAATYNIMIDCCSIIRCFKSASALVSM 569
            +A E++ ++                    + PN  TY  ++D          A  L+  
Sbjct: 345 SKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDA 404

Query: 570 MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
           M+  G  P  + Y ALI      G  D A  +   ++  G    V  Y +++ +  + GR
Sbjct: 405 MLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGR 464

Query: 630 IDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           +D+   ++ QM ++   P+  T   +  G    G    A++ L ++  +     V T
Sbjct: 465 LDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVT 521



 Score = 57.0 bits (136), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 77/317 (24%), Positives = 132/317 (41%), Gaps = 32/317 (10%)

Query: 328 SHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLD 387
           +H   G + A   D      M  L  M+ N+  P   T  TL     K  +L   + +++
Sbjct: 46  THMISGLMEASYFDEA----MSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIIN 101

Query: 388 QI-SRCTNPKP--FSAFL-AACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLF-SLFGN 441
            + +   NP P  F++ + + C+  D    A K+  +M      P    Y +   S+ G 
Sbjct: 102 MMMTEGCNPNPSLFNSLVHSYCNEKDYA-YAYKLLNRMTTCGCPPGYVVYNIFIGSICGQ 160

Query: 442 VNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEG-------MIR 494
              P  +      +D A++I     +M   N   + +++ N  + L   G       +I+
Sbjct: 161 EKLPSPD-----LLDLAEKIYG---EMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIK 212

Query: 495 ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCC 554
           E+++       P  T TY+ V+  L  A +  +A  +F++MK  G+ P+  TY I+ID  
Sbjct: 213 EMMR---KGFVP-DTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSF 268

Query: 555 SIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGI-PHD 613
                 + A  L   M   G  P  +TYTALI   L      +A ++   +   G  P+D
Sbjct: 269 CKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPND 328

Query: 614 VLLYNTILKKACEKGRI 630
           V  Y  ++   C+ G I
Sbjct: 329 V-TYGALVDGLCKAGNI 344


>gi|224095732|ref|XP_002310456.1| predicted protein [Populus trichocarpa]
 gi|222853359|gb|EEE90906.1| predicted protein [Populus trichocarpa]
          Length = 721

 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 128/568 (22%), Positives = 220/568 (38%), Gaps = 56/568 (9%)

Query: 130 QALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMV 189
            +LCK G   EA +L+    E+    P   +Y   +    +      A   L  M +   
Sbjct: 18  HSLCKSGKWREALSLL----EKEEFVPDTVLYTKMISGLCEASLFEEAMDFLTRMRASSC 73

Query: 190 GKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK---HYSLSIFSLRKFVWSFTRLRDLKSA 246
             N +TY  LL   + ++ L     I    I    + S  IF+    V ++ R  D   A
Sbjct: 74  LPNVLTYRILLCGCLNKEKLGRCKRILSMMITEGCYPSPRIFN--SLVHAYCRSGDYAYA 131

Query: 247 YETLQHMVALAMMGKLYINRTSEGRLRSSR------LDIPIP-----LNALPVM-KVLRW 294
           Y+ L+ MV         +     G + SS       LD+        L A  V+ KV   
Sbjct: 132 YKLLKKMVQCGCQPGYVVYNILIGGICSSEEPGKDVLDLAEKAYGEMLEAGVVLNKVNIS 191

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +FS  +   G+ +    A  ++ +M S G  P + TY   I  + +   +    ++ + M
Sbjct: 192 NFSRCLCGIGKFEK---AYNVIREMMSKGFIPDTSTYSKVIGYLCNASKVEKAFQLFQEM 248

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKP 411
           ++N + P      TL     KA  ++ A    D++ R     N   ++A + A     K 
Sbjct: 249 KRNGIAPDVYVYTTLIDSFCKAGFIEQARNWFDEMERDGCAPNVVTYTALIHAYLKSRKV 308

Query: 412 ERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
            +A +++  M  K   P+I TY  L    G   A         +++ A +I  I   M +
Sbjct: 309 SKANEVYEMMLSKGCTPNIVTYTALID--GLCKA--------GKIEKASQIYKI---MKK 355

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAME 530
            N++   + M +     GA             S  P    TY  ++  L +A +   A +
Sbjct: 356 ENVEIPDVDM-HFRVVDGA-------------SNEP-NVFTYGALVDGLCKAYQVKEARD 400

Query: 531 IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590
           + K M   G  PN   Y+ +ID C        A  + + M+  G+ P   TY++LI  L 
Sbjct: 401 LLKSMSVEGCEPNHVVYDALIDGCCKAGKLDEAQEVFTTMLECGYDPNVYTYSSLIDRLF 460

Query: 591 DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650
                D AL +L  +       +V++Y  ++   C+ G+ D    ++  M +    P+  
Sbjct: 461 KDKRLDLALKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMVMMEEKGCNPNVV 520

Query: 651 TCHFVFSGYVNCGFHNSAMEALQVLSMR 678
           T   +  G+   G     +E LQ +S +
Sbjct: 521 TYTAMIDGFGKSGRVEKCLELLQQMSSK 548



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 118/609 (19%), Positives = 242/609 (39%), Gaps = 55/609 (9%)

Query: 10  FQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCR-GER 68
           + ++    C S+    +  ++A K      L   + LN+ +IS  ++      LC  G+ 
Sbjct: 150 YNILIGGICSSEEPGKDVLDLAEK-AYGEMLEAGVVLNKVNISNFSR-----CLCGIGKF 203

Query: 69  SRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLM 128
            +A +++  +           +  ++ Y   +       + ++ M+   I  +   Y  +
Sbjct: 204 EKAYNVIREMMSKGFIPDTSTYSKVIGYLCNASKVEKAFQLFQEMKRNGIAPDVYVYTTL 263

Query: 129 MQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRM 188
           + + CK G++E+A N    + ER G  P +  Y + + A  K   +  AN   ++M S+ 
Sbjct: 264 IDSFCKAGFIEQARNWFDEM-ERDGCAPNVVTYTALIHAYLKSRKVSKANEVYEMMLSKG 322

Query: 189 VGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYE 248
              N VTYT L+        +    +I++  +K  ++ I  +      F  +    +   
Sbjct: 323 CTPNIVTYTALIDGLCKAGKIEKASQIYK-IMKKENVEIPDVD---MHFRVVDGASNEPN 378

Query: 249 TLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQN 308
              +   +  + K Y  + +   L+S  ++   P + +         +  +I  C +   
Sbjct: 379 VFTYGALVDGLCKAYQVKEARDLLKSMSVEGCEPNHVV---------YDALIDGCCKAGK 429

Query: 309 SGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIAT 368
              A+++   M   G  P+ +TY   I  +  D+ L   ++VL  M +N+  P       
Sbjct: 430 LDEAQEVFTTMLECGYDPNVYTYSSLIDRLFKDKRLDLALKVLSKMLENSCAPNVVIYTE 489

Query: 369 LSVECSKALELDLAEALLDQI-SRCTNPK--PFSAFLAACDTMDKPERAIKIFAKMRQK- 424
           +     K  + D A  L+  +  +  NP    ++A +       + E+ +++  +M  K 
Sbjct: 490 MIDGLCKVGKTDEAYKLMVMMEEKGCNPNVVTYTAMIDGFGKSGRVEKCLELLQQMSSKG 549

Query: 425 LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLL 484
             P+  TY +L      +N     G     +D A ++    ++  +      H++    +
Sbjct: 550 CAPNFVTYRVL------INHCCSTG----LLDEAHKL----LEEMKQTYWPRHVAGYRKV 595

Query: 485 KALGAEGMIRELIQYFC-------DSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKT 537
                EG  RE I           +   P+  P Y  ++ + ++A     A+E+ +++ +
Sbjct: 596 ----IEGFNREFIASLYLSFEISENDSVPVA-PVYRVLIDNFIKAGRLEIALELNEELSS 650

Query: 538 CGIPPNAATYNI---MIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGD 594
              P +AA  NI   +I+  S+      A  L + M+  G  P+      LIK LL    
Sbjct: 651 FS-PFSAANQNIHITLIENLSLAHKADKAFELYADMISRGSIPELSILVHLIKGLLRVNR 709

Query: 595 FDEALNLLD 603
           ++EAL LLD
Sbjct: 710 WEEALQLLD 718



 Score = 48.5 bits (114), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 73/350 (20%), Positives = 127/350 (36%), Gaps = 68/350 (19%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ +IHA  +++    A ++   M S G  P+  TY   I  +     +    ++ KIM
Sbjct: 294 TYTALIHAYLKSRKVSKANEVYEMMLSKGCTPNIVTYTALIDGLCKAGKIEKASQIYKIM 353

Query: 355 QQNNLK-----------------PQDSTIATLSVECSKALELDLAEALLDQIS--RC-TN 394
           ++ N++                 P   T   L     KA ++  A  LL  +S   C  N
Sbjct: 354 KKENVEIPDVDMHFRVVDGASNEPNVFTYGALVDGLCKAYQVKEARDLLKSMSVEGCEPN 413

Query: 395 PKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYE-LLFSLFGNVNAPYEEGNMF 452
              + A +  C    K + A ++F  M +    P++ TY  L+  LF +           
Sbjct: 414 HVVYDALIDGCCKAGKLDEAQEVFTTMLECGYDPNVYTYSSLIDRLFKD----------- 462

Query: 453 SQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTY 512
                 KR++               +++K L K L              ++        Y
Sbjct: 463 ------KRLD---------------LALKVLSKML--------------ENSCAPNVVIY 487

Query: 513 NTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVR 572
             ++  L +  ++  A ++   M+  G  PN  TY  MID        +    L+  M  
Sbjct: 488 TEMIDGLCKVGKTDEAYKLMVMMEEKGCNPNVVTYTAMIDGFGKSGRVEKCLELLQQMSS 547

Query: 573 DGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILK 622
            G  P  +TY  LI      G  DEA  LL+ +     P  V  Y  +++
Sbjct: 548 KGCAPNFVTYRVLINHCCSTGLLDEAHKLLEEMKQTYWPRHVAGYRKVIE 597


>gi|11994279|dbj|BAB01462.1| unnamed protein product [Arabidopsis thaliana]
          Length = 648

 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 87/405 (21%), Positives = 174/405 (42%), Gaps = 28/405 (6%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           ++  V++   ++ NS LA  L  +M+   ++ S   Y   I ++  D    + + +   M
Sbjct: 241 TYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEM 300

Query: 355 QQNNLKPQDSTIATL-SVECSKALELDLAEALLDQISRCTNPK--PFSAFLAACDTMDKP 411
           +   +K    T ++L    C+     D A+ L + I R   P    FSA +       K 
Sbjct: 301 EMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKL 360

Query: 412 ERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
             A +++ +M  + + PD  TY  L   F   N  +E   MF  + S       E D+  
Sbjct: 361 LEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVS----KGCEPDIVT 416

Query: 471 NNIQ-HSHISMKN------LLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQ 523
            +I  +S+   K       L + + ++G+I   I             TYNT++    ++ 
Sbjct: 417 YSILINSYCKAKRVDDGMRLFREISSKGLIPNTI-------------TYNTLVLGFCQSG 463

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
           + + A E+F++M + G+PP+  TY I++D          A  +   M +         Y 
Sbjct: 464 KLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYN 523

Query: 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
            +I  + +    D+A +L   +S +G+  DV+ YN ++   C+KG +   + +  +M ++
Sbjct: 524 IIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKED 583

Query: 644 KVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLE 688
              PD  T + +   ++      S++E ++ + +     + ST++
Sbjct: 584 GCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVCGFSADSSTIK 628



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 99/516 (19%), Positives = 205/516 (39%), Gaps = 85/516 (16%)

Query: 54  ATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFH--ILNYCARSPDPLFVMETWR 111
            T   +++ LC   R   + +L++     +    D+  +  +LN   +S +    ++ +R
Sbjct: 205 VTVSTLINGLCLKGRVSEALVLIDR-MVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFR 263

Query: 112 MMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKL 171
            MEE+ I  +   Y +++ +LCK G  ++A +L   + E  GI   +  Y+S +G     
Sbjct: 264 KMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEM-EMKGIKADVVTYSSLIGGLCND 322

Query: 172 HSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYSLSIFSL 230
                    L  M  R +  + VT++ L+ + V +  L    E++ + I +  +    + 
Sbjct: 323 GKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITY 382

Query: 231 RKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMK 290
              +  F +   L  A +    MV+                 +    DI           
Sbjct: 383 NSLIDGFCKENCLHEANQMFDLMVS-----------------KGCEPDI----------- 414

Query: 291 VLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEV 350
               ++S +I++  + +      +L  ++ S GL P++ TY+  +        L    E+
Sbjct: 415 ---VTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKEL 471

Query: 351 LKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDK 410
            + M    + P   ++ T  +             LLD +               CD   +
Sbjct: 472 FQEMVSRGVPP---SVVTYGI-------------LLDGL---------------CDN-GE 499

Query: 411 PERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
             +A++IF KM++ ++   I  Y ++  + G  NA        S+VD A    ++   ++
Sbjct: 500 LNKALEIFEKMQKSRMTLGIGIYNII--IHGMCNA--------SKVDDAW---SLFCSLS 546

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESH 526
              ++   ++   ++  L  +G + E    F   K    TP   TYN ++ + +      
Sbjct: 547 DKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLI 606

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKS 562
            ++E+ ++MK CG   +++T  ++ID  S  R  KS
Sbjct: 607 SSVELIEEMKVCGFSADSSTIKMVIDMLSDRRLDKS 642



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 92/228 (40%), Gaps = 8/228 (3%)

Query: 461 INAIEMDMARNNIQ-HSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSL 519
           +N IE DM    I  + +   K LL A    G   +L  Y  D      T T++T+++  
Sbjct: 127 LNGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKL-GYEPD------TITFSTLVNGF 179

Query: 520 VEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQT 579
                   A+ +  +M      P+  T + +I+   +      A  L+  MV  GF P  
Sbjct: 180 CLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDE 239

Query: 580 MTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQ 639
           +TY  ++  L   G+   AL+L   +    I   V+ Y+ ++   C+ G  D    +  +
Sbjct: 240 VTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNE 299

Query: 640 MHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTL 687
           M    ++ D  T   +  G  N G  +   + L+ +  R +  +V T 
Sbjct: 300 MEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTF 347


>gi|297833514|ref|XP_002884639.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330479|gb|EFH60898.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 864

 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 79/374 (21%), Positives = 156/374 (41%), Gaps = 20/374 (5%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTI-ATLS 370
           A  L  +M + G +P+ HTY   I  +  D  +     V + M ++ + P   T  A ++
Sbjct: 320 AFNLFDEMIARGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDGIFPSVITYNALIN 379

Query: 371 VECSKALELDLAEALLDQISRCTNP--KPFSAFLAACDTMDKPERAIKIFAKM-RQKLRP 427
             C     +   E L     R   P  + F+  +     + KP +A+ +  +M    L P
Sbjct: 380 GYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSP 439

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL 487
           DI +Y +L      ++    EG+M         +N+ ++       +   ++   ++ A 
Sbjct: 440 DIVSYNVL------IDGLCREGHMNVAYKLLTSMNSFDL-------EPDCLTFTAIINAF 486

Query: 488 GAEG---MIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNA 544
             +G   +    +         L   T  T++  +    ++  A+ I + +    +    
Sbjct: 487 CKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCNVGKTRDALFILETLVKMRMLTTP 546

Query: 545 ATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDL 604
            + N+++D  S     K   A++  + + G  P  +TYT L+  L+  GD   +  +L+L
Sbjct: 547 HSLNVILDMLSKGCKLKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDISGSFRMLEL 606

Query: 605 VSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGF 664
           + L G   +V  Y  I+   C+ GR++  E ++  M  + V P+  T   +  GYVN G 
Sbjct: 607 MKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGK 666

Query: 665 HNSAMEALQVLSMR 678
            + A+E ++ +  R
Sbjct: 667 LDRALETVRAMVER 680



 Score = 71.6 bits (174), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 76/164 (46%), Gaps = 3/164 (1%)

Query: 528 AMEIFKQMKTCGI-PPNAATYNIMI-DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
           A+++F  M   G   PN+ +Y+I+I   C + R  + A  L   M   G  P T TYT L
Sbjct: 249 ALKVFDLMSREGTCAPNSVSYSILIHGLCEVGR-LEEAFGLKDQMGEKGCQPSTRTYTVL 307

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           IK L D G  D+A NL D +   G   +V  Y  ++   C  G+I+    +  +M ++ +
Sbjct: 308 IKALCDRGLIDKAFNLFDEMIARGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDGI 367

Query: 646 QPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEE 689
            P   T + + +GY   G    A E L V+  R     V T  E
Sbjct: 368 FPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNE 411



 Score = 66.6 bits (161), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 74/164 (45%)

Query: 509 TPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVS 568
           T TY  ++ +L +     +A  +F +M   G  PN  TY ++ID        + A+ +  
Sbjct: 301 TRTYTVLIKALCDRGLIDKAFNLFDEMIARGCKPNVHTYTVLIDGLCRDGKIEEANGVCR 360

Query: 569 MMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
            MV+DG +P  +TY ALI      G    A  LL ++       +V  +N +++  C  G
Sbjct: 361 KMVKDGIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVG 420

Query: 629 RIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEAL 672
           +      ++++M  N + PD  + + +  G    G  N A + L
Sbjct: 421 KPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNVAYKLL 464



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 68/163 (41%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           +Y+ ++H L E      A  +  QM   G  P+  TY ++I           A  L   M
Sbjct: 268 SYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEM 327

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           +  G  P   TYT LI  L   G  +EA  +   +  +GI   V+ YN ++   C+ GR+
Sbjct: 328 IARGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDGIFPSVITYNALINGYCKDGRV 387

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
                ++  M +   +P+  T + +  G    G    A+  L+
Sbjct: 388 VPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLK 430



 Score = 52.8 bits (125), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 109/542 (20%), Positives = 221/542 (40%), Gaps = 34/542 (6%)

Query: 121 NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLC 180
           N   Y +++  LC+ G +EEA+ +   +  + GI+P +  YN+ +    K   +V A   
Sbjct: 335 NVHTYTVLIDGLCRDGKIEEANGVCRKM-VKDGIFPSVITYNALINGYCKDGRVVPAFEL 393

Query: 181 LDLMDSRMVGKNEVTYTELLK-LAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTR 239
           L +M+ R    N  T+ EL++ L    K   AVH +        S  I S    +    R
Sbjct: 394 LTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCR 453

Query: 240 LRDLKSAYETLQHMVALAMMGK-LYINRTSEGRLRSSRLDIPIPLNALPVMK------VL 292
              +  AY+ L  M +  +    L          +  + D+      L + K      V 
Sbjct: 454 EGHMNVAYKLLTSMNSFDLEPDCLTFTAIINAFCKQGKADVASAFLGLMLRKGISLDEVT 513

Query: 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
             +  D +   G+T+++    + +++M+ L    + H+ +  +  +     L+  + +L 
Sbjct: 514 GTTLIDGVCNVGKTRDALFILETLVKMRML---TTPHSLNVILDMLSKGCKLKEELAMLG 570

Query: 353 IMQQNNLKPQDSTIATLSVECSKALELDLAEALLD--QISRC-TNPKPFSAFLAACDTMD 409
            + +  L P   T  TL     ++ ++  +  +L+  ++S C  N  P++  +       
Sbjct: 571 KINKLGLVPSVVTYTTLVDGLIRSGDISGSFRMLELMKLSGCLPNVYPYTIIINGLCQFG 630

Query: 410 KPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
           + E A K+ + M+   + P+  TY ++    G VN     G +   +++ + +  +E   
Sbjct: 631 RVEEAEKLLSAMQDSGVSPNHVTYTVMVK--GYVN----NGKLDRALETVRAM--VERGY 682

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRA 528
             N+  +S +    +L   G      E I+        LG  T    +  +    +  R 
Sbjct: 683 ELNDRIYSSLLRGFVLSQKGIRETDPECIKELISVVEQLGGSTSGLCIFLVTRLCKEGRT 742

Query: 529 ME---IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
            E   + + +   G+    A   IM   CS  +  K    L++++++ GF P   ++  +
Sbjct: 743 DESNGLVQTILKSGVFLEKAIDIIMESYCSKKKHTKCVE-LITLVLKSGFVPSFKSFCLV 801

Query: 586 IKILLDYGDFDEALNL-LDLVSLEGI--PHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642
           I+ L   GD + A  L ++L++  G+     VL Y   L    E G    +  +++Q+H 
Sbjct: 802 IQGLKKEGDTERARELVMELLTSNGVVEKSGVLPYVECLM---ETGDCSEVIDLVDQLHS 858

Query: 643 NK 644
            +
Sbjct: 859 RE 860



 Score = 44.7 bits (104), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 106/546 (19%), Positives = 197/546 (36%), Gaps = 69/546 (12%)

Query: 59  IVDALCRGERSRASHL----LLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMM- 113
           IV+ALC+   + A+ +    +L +G    S        +L +C R  +    ++ + +M 
Sbjct: 201 IVNALCKNGYTEAAEMFMCKILKVGFLLDSHIVTSL--LLGFC-RGLNLRDALKVFDLMS 257

Query: 114 EEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHS 173
            E     N+  Y +++  LC+ G LEEA  L   +GE+ G  P    Y   + A      
Sbjct: 258 REGTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEK-GCQPSTRTYTVLIKALCDRGL 316

Query: 174 MVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSL-SIFSLRK 232
           +  A    D M +R    N  TYT L+        +   + +    +K     S+ +   
Sbjct: 317 IDKAFNLFDEMIARGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDGIFPSVITYNA 376

Query: 233 FVWSFTRLRDLKSAYETLQHMVALAMMGKL-YINRTSEGRLRSSRLDIPIPLNALPVMKV 291
            +  + +   +  A+E L  M   A    +   N   EG  R  +     P  A+ ++K 
Sbjct: 377 LINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGK-----PYKAVHLLKR 431

Query: 292 LR--------WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRG 343
           +          S++ +I    R  +  +A +L+  M S  L+P   T+   I A      
Sbjct: 432 MLDNGLSPDIVSYNVLIDGLCREGHMNVAYKLLTSMNSFDLEPDCLTFTAIINAFCKQ-- 489

Query: 344 LRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELD--LAEALLDQISRCTNPKPFSAF 401
                              D   A L +   K + LD      L+D +  C   K   A 
Sbjct: 490 ----------------GKADVASAFLGLMLRKGISLDEVTGTTLIDGV--CNVGKTRDAL 531

Query: 402 LAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI 461
                        ++   KMR    P   +  ++  +        EE  M  +++     
Sbjct: 532 F-----------ILETLVKMRMLTTP--HSLNVILDMLSKGCKLKEELAMLGKIN----- 573

Query: 462 NAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVE 521
              ++ +  + + ++ + +  L+++    G  R L         P   P Y  +++ L +
Sbjct: 574 ---KLGLVPSVVTYTTL-VDGLIRSGDISGSFRMLELMKLSGCLPNVYP-YTIIINGLCQ 628

Query: 522 AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMT 581
                 A ++   M+  G+ PN  TY +M+           A   V  MV  G+      
Sbjct: 629 FGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRALETVRAMVERGYELNDRI 688

Query: 582 YTALIK 587
           Y++L++
Sbjct: 689 YSSLLR 694


>gi|357509703|ref|XP_003625140.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355500155|gb|AES81358.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 855

 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 83/377 (22%), Positives = 155/377 (41%), Gaps = 30/377 (7%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ +I+A GR      A  +M  M    + PS  TY+  I A  S    +  + V K M
Sbjct: 187 TYNALINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLINACGSSGNWKEALNVCKKM 246

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSA----FLAACDTMDK 410
             N + P   T   +        +   A +  + I + T+ +P +      +     + +
Sbjct: 247 TDNGVGPDLVTHNIMLTAFKSGTQYSKALSYFELI-KGTHIRPDTTTHNIIIHCLVKLKQ 305

Query: 411 PERAIKIFAKMRQK---LRPDIRTYEL---LFSLFGNVNAPYEEGNMFSQVDSAKRINAI 464
            ++A+ IF  M++K     PD+ T+     L+S+ G++       NM             
Sbjct: 306 YDKAVDIFNSMKEKKSECHPDVVTFTSMIHLYSVCGHIENCEAAFNM------------- 352

Query: 465 EMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVE 521
              M    ++ + +S   LL A  A GM  E +Q F + K     P   +Y ++L++   
Sbjct: 353 ---MLAEGLKPNIVSYNALLGAYAARGMENEALQVFNEIKQNGFRPDVVSYTSLLNAYGR 409

Query: 522 AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMT 581
           +++  +A EIFK +K   + PN  +YN +ID        + A  ++  M +D  +P  ++
Sbjct: 410 SRKPQKAREIFKMIKRNNLKPNIVSYNALIDAYGSNGLLEDAIEILREMEQDKIHPNVVS 469

Query: 582 YTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMH 641
              L+      G   +   +L    + GI  + + YN+ +      G  D    +   M 
Sbjct: 470 ICTLLAACGRCGQKVKIDTVLSAAEMRGIKLNTVAYNSAIGSYINVGEYDKAIDLYNSMR 529

Query: 642 QNKVQPDPSTCHFVFSG 658
           + K++ D  T   + SG
Sbjct: 530 KKKIKSDSVTYTVLISG 546



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 93/421 (22%), Positives = 175/421 (41%), Gaps = 77/421 (18%)

Query: 295 SFSDVIH---ACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRN-GMEV 350
           +F+ +IH    CG  +N   A  +ML   + GL+P+  +Y+  + A  + RG+ N  ++V
Sbjct: 329 TFTSMIHLYSVCGHIENCEAAFNMML---AEGLKPNIVSYNALLGAYAA-RGMENEALQV 384

Query: 351 LKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDK 410
              ++QN  +P                         D +S       +++ L A     K
Sbjct: 385 FNEIKQNGFRP-------------------------DVVS-------YTSLLNAYGRSRK 412

Query: 411 PERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM--D 467
           P++A +IF  + R  L+P+I +Y  L   +G+ N   E+              AIE+  +
Sbjct: 413 PQKAREIFKMIKRNNLKPNIVSYNALIDAYGS-NGLLED--------------AIEILRE 457

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSK---TPLGTPTYNTVLHSLVEAQE 524
           M ++ I  + +S+  LL A G  G   ++      ++     L T  YN+ + S +   E
Sbjct: 458 MEQDKIHPNVVSICTLLAACGRCGQKVKIDTVLSAAEMRGIKLNTVAYNSAIGSYINVGE 517

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
             +A++++  M+   I  ++ TY ++I  C  +  F  A + +  M+          Y++
Sbjct: 518 YDKAIDLYNSMRKKKIKSDSVTYTVLISGCCKMSKFGEALSFMEEMMHLKLPMSKEVYSS 577

Query: 585 LI----KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQM 640
           +I    K     G   EA +  +L+   G   DV+ Y  +L       + + +  + E+M
Sbjct: 578 IICAYSKQASALGQIIEAESTFNLMKSLGCSPDVVTYTAMLDAYNAAEKWEKLYALFEEM 637

Query: 641 HQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDFEDLILA 700
            +N V+ D   C  +   +      N   +  +VLS+        ++ EK     D I  
Sbjct: 638 EENDVKLDTIACAALMRAF------NKGGQPGRVLSL------AQSMREKDIPLSDTIFF 685

Query: 701 E 701
           E
Sbjct: 686 E 686



 Score = 53.1 bits (126), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 36/162 (22%), Positives = 72/162 (44%)

Query: 509 TPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVS 568
           T  YN ++        + +A  +F +M+ C   P+A TYN +I+       ++ A  ++ 
Sbjct: 150 TDIYNMMIRLHARHNRTDQARGLFFEMQKCRCKPDAETYNALINAHGRAGQWRWAMNIMD 209

Query: 569 MMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
            M+R    P   TY  LI      G++ EALN+   ++  G+  D++ +N +L       
Sbjct: 210 DMLRAAIPPSRSTYNNLINACGSSGNWKEALNVCKKMTDNGVGPDLVTHNIMLTAFKSGT 269

Query: 629 RIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAME 670
           +        E +    ++PD +T + +    V    ++ A++
Sbjct: 270 QYSKALSYFELIKGTHIRPDTTTHNIIIHCLVKLKQYDKAVD 311


>gi|300681581|emb|CBI75525.1| PPR repeat domain containing protein [Triticum aestivum]
          Length = 728

 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/258 (22%), Positives = 113/258 (43%), Gaps = 12/258 (4%)

Query: 427 PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKA 486
           P+I +Y +L S+       Y  G      ++ + ++ +E++  R N       +  L +A
Sbjct: 209 PNIYSYSVLMSM-------YTHGAKLCLEEAQELLSEMEVEGVRPNAATYGTYLYGLCRA 261

Query: 487 LGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAAT 546
              +      +Q  C    P  +  +N V+H      + H+A+E+F  MK CG  P+  +
Sbjct: 262 KQVKSA-WNFLQMLCQRGYPCNSYCFNAVIHGFCHDGQVHKAVEVFDGMKKCGFVPDVHS 320

Query: 547 YNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVS 606
           Y+I++D         +   ++  M R+G  P  ++Y++L+  L   G  + A  L   + 
Sbjct: 321 YSILVDGLCKQGDVLTGYYMLVEMARNGITPNLVSYSSLLHGLCRAGRVELAFELFKRLK 380

Query: 607 LEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHN 666
            +G  HD ++Y+ +L   C+   +++   +   M  +   PD      +   Y     H 
Sbjct: 381 DQGFKHDHIVYSIVLHGCCQHLDLEICYDLWNDMVHHNFVPDAYNYSSLIYAYCR---HR 437

Query: 667 SAMEALQVLSMRMLCEEV 684
              EAL+V  + M+C+ +
Sbjct: 438 QLKEALEVFEL-MICDGI 454



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 71/326 (21%), Positives = 132/326 (40%), Gaps = 24/326 (7%)

Query: 344 LRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP-----F 398
           L    E+L  M+   ++P  +T  T      +A ++  A   L  +  C    P     F
Sbjct: 229 LEEAQELLSEMEVEGVRPNAATYGTYLYGLCRAKQVKSAWNFLQML--CQRGYPCNSYCF 286

Query: 399 SAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDS 457
           +A +       +  +A+++F  M++    PD+ +Y +L      V+   ++G++ +    
Sbjct: 287 NAVIHGFCHDGQVHKAVEVFDGMKKCGFVPDVHSYSIL------VDGLCKQGDVLTGY-- 338

Query: 458 AKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIR---ELIQYFCDSKTPLGTPTYNT 514
                 + ++MARN I  + +S  +LL  L   G +    EL +   D         Y+ 
Sbjct: 339 -----YMLVEMARNGITPNLVSYSSLLHGLCRAGRVELAFELFKRLKDQGFKHDHIVYSI 393

Query: 515 VLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDG 574
           VLH   +  +     +++  M      P+A  Y+ +I      R  K A  +  +M+ DG
Sbjct: 394 VLHGCCQHLDLEICYDLWNDMVHHNFVPDAYNYSSLIYAYCRHRQLKEALEVFELMICDG 453

Query: 575 FYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIE 634
             P  +T T L+    + G   EA   LD V   G+  ++  Y  I+   C+  + + + 
Sbjct: 454 ICPNVVTCTILVHGFSNEGLIGEAFLFLDKVRQFGVVPNLCTYRVIINGLCKVNKPNDVW 513

Query: 635 FIIEQMHQNKVQPDPSTCHFVFSGYV 660
            I   M +    PD      +  G+V
Sbjct: 514 GIFADMIKRGYVPDTVLYSIIIDGFV 539



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 101/497 (20%), Positives = 187/497 (37%), Gaps = 38/497 (7%)

Query: 138 LEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYT 197
           LEEA  L+  + E  G+ P    Y ++L    +   +  A   L ++  R    N   + 
Sbjct: 229 LEEAQELLSEM-EVEGVRPNAATYGTYLYGLCRAKQVKSAWNFLQMLCQRGYPCNSYCFN 287

Query: 198 ELLKLAVWQKNLSAVHEIWEDYIK-HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVAL 256
            ++        +    E+++   K  +   + S    V    +  D+ + Y  L  M   
Sbjct: 288 AVIHGFCHDGQVHKAVEVFDGMKKCGFVPDVHSYSILVDGLCKQGDVLTGYYMLVEMARN 347

Query: 257 AMMGKLYINRTS--EGRLRSSRLDIPIPLNALPVMKVLR--------WSFSDVIHACGRT 306
            +   L ++ +S   G  R+ R+++     A  + K L+          +S V+H C + 
Sbjct: 348 GITPNL-VSYSSLLHGLCRAGRVEL-----AFELFKRLKDQGFKHDHIVYSIVLHGCCQH 401

Query: 307 QNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTI 366
            +  +   L   M      P ++ Y   I A    R L+  +EV ++M  + + P   T 
Sbjct: 402 LDLEICYDLWNDMVHHNFVPDAYNYSSLIYAYCRHRQLKEALEVFELMICDGICPNVVTC 461

Query: 367 ATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKPERAIKIFAKM-R 422
             L    S    +  A   LD++ +     N   +   +     ++KP     IFA M +
Sbjct: 462 TILVHGFSNEGLIGEAFLFLDKVRQFGVVPNLCTYRVIINGLCKVNKPNDVWGIFADMIK 521

Query: 423 QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQ-VDSAKRINAIEMDMARNNIQHSH--IS 479
           +   PD   Y ++   F       E   ++ + VD   + N        N + H      
Sbjct: 522 RGYVPDTVLYSIIIDGFVKALDLQEAFRLYYKMVDEGTKPNIFTYTSLINGLCHDDKLPE 581

Query: 480 MKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCG 539
           +  L K +  EG+  + I              Y +++    +      A+EIF++M+T G
Sbjct: 582 VMTLFKHMIGEGLTPDRI-------------LYTSLIACYCKRSNMKAALEIFREMETEG 628

Query: 540 IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEAL 599
           +  ++  Y  +I   S +     A   +  M+  G  P  +TYT LI      GD  +A+
Sbjct: 629 LSADSFVYTCLIGGFSKVLAMDGAQLFMEEMMNKGLTPTVVTYTDLIIGYFKIGDEKKAM 688

Query: 600 NLLDLVSLEGIPHDVLL 616
            + + +   GI  D  L
Sbjct: 689 VMYNSMLQAGIAPDAKL 705



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 66/392 (16%), Positives = 156/392 (39%), Gaps = 39/392 (9%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTI--ATL 369
           A++L+ +M+  G++P++ TY  ++  +   + +++    L+++ Q    P +S    A +
Sbjct: 232 AQELLSEMEVEGVRPNAATYGTYLYGLCRAKQVKSAWNFLQMLCQRGY-PCNSYCFNAVI 290

Query: 370 SVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKM----RQKL 425
              C    ++  A  + D + +C       ++    D + K    +  +  +    R  +
Sbjct: 291 HGFCHDG-QVHKAVEVFDGMKKCGFVPDVHSYSILVDGLCKQGDVLTGYYMLVEMARNGI 349

Query: 426 RPDIRTY-------------ELLFSLFGNV-NAPYEEGNMFSQVDSAKRINAIEM----- 466
            P++ +Y             EL F LF  + +  ++  ++   +        +++     
Sbjct: 350 TPNLVSYSSLLHGLCRAGRVELAFELFKRLKDQGFKHDHIVYSIVLHGCCQHLDLEICYD 409

Query: 467 ---DMARNNIQHSHISMKNLLKALGAEGMIRELIQYF----CDSKTPLGTPTYNTVLHSL 519
              DM  +N      +  +L+ A      ++E ++ F    CD   P    T   ++H  
Sbjct: 410 LWNDMVHHNFVPDAYNYSSLIYAYCRHRQLKEALEVFELMICDGICP-NVVTCTILVHGF 468

Query: 520 VEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQT 579
                   A     +++  G+ PN  TY ++I+    +        + + M++ G+ P T
Sbjct: 469 SNEGLIGEAFLFLDKVRQFGVVPNLCTYRVIINGLCKVNKPNDVWGIFADMIKRGYVPDT 528

Query: 580 MTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQ 639
           + Y+ +I   +   D  EA  L   +  EG   ++  Y +++   C   ++  +  + + 
Sbjct: 529 VLYSIIIDGFVKALDLQEAFRLYYKMVDEGTKPNIFTYTSLINGLCHDDKLPEVMTLFKH 588

Query: 640 MHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEA 671
           M    + PD      +++  + C    S M+A
Sbjct: 589 MIGEGLTPD----RILYTSLIACYCKRSNMKA 616



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 67/364 (18%), Positives = 140/364 (38%), Gaps = 24/364 (6%)

Query: 315 LMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECS 374
           ++++M   G+ P+  +Y   +  +     +    E+ K ++    K      + +   C 
Sbjct: 340 MLVEMARNGITPNLVSYSSLLHGLCRAGRVELAFELFKRLKDQGFKHDHIVYSIVLHGCC 399

Query: 375 KALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKPERAIKIFAKMR-QKLRPDIR 430
           + L+L++   L + +       +   +S+ + A     + + A+++F  M    + P++ 
Sbjct: 400 QHLDLEICYDLWNDMVHHNFVPDAYNYSSLIYAYCRHRQLKEALEVFELMICDGICPNVV 459

Query: 431 TYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAE 490
           T  +L   F N       G  F  +D  ++   +       N+    + +  L K     
Sbjct: 460 TCTILVHGFSNEGLI---GEAFLFLDKVRQFGVVP------NLCTYRVIINGLCKVNKPN 510

Query: 491 ---GMIRELIQ--YFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAA 545
              G+  ++I+  Y  D      T  Y+ ++   V+A +   A  ++ +M   G  PN  
Sbjct: 511 DVWGIFADMIKRGYVPD------TVLYSIIIDGFVKALDLQEAFRLYYKMVDEGTKPNIF 564

Query: 546 TYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLV 605
           TY  +I+             L   M+ +G  P  + YT+LI       +   AL +   +
Sbjct: 565 TYTSLINGLCHDDKLPEVMTLFKHMIGEGLTPDRILYTSLIACYCKRSNMKAALEIFREM 624

Query: 606 SLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFH 665
             EG+  D  +Y  ++    +   +D  +  +E+M    + P   T   +  GY   G  
Sbjct: 625 ETEGLSADSFVYTCLIGGFSKVLAMDGAQLFMEEMMNKGLTPTVVTYTDLIIGYFKIGDE 684

Query: 666 NSAM 669
             AM
Sbjct: 685 KKAM 688



 Score = 53.1 bits (126), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/173 (23%), Positives = 79/173 (45%), Gaps = 9/173 (5%)

Query: 483 LLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESH-------RAMEIFKQM 535
           LLK L     I  +   F D K  +  P+ N   +S++ +  +H        A E+  +M
Sbjct: 182 LLKGLVEGNQIMYVRSLFDDMK--ISGPSPNIYSYSVLMSMYTHGAKLCLEEAQELLSEM 239

Query: 536 KTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDF 595
           +  G+ PNAATY   +      +  KSA   + M+ + G+   +  + A+I      G  
Sbjct: 240 EVEGVRPNAATYGTYLYGLCRAKQVKSAWNFLQMLCQRGYPCNSYCFNAVIHGFCHDGQV 299

Query: 596 DEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
            +A+ + D +   G   DV  Y+ ++   C++G +    +++ +M +N + P+
Sbjct: 300 HKAVEVFDGMKKCGFVPDVHSYSILVDGLCKQGDVLTGYYMLVEMARNGITPN 352



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 62/155 (40%), Gaps = 2/155 (1%)

Query: 496 LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCS 555
           L+ Y    K  +     N +L  LVE  +      +F  MK  G  PN  +Y++++   +
Sbjct: 163 LVTYVEAKKVGVELQVCNFLLKGLVEGNQIMYVRSLFDDMKISGPSPNIYSYSVLMSMYT 222

Query: 556 --IIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHD 613
                C + A  L+S M  +G  P   TY   +  L        A N L ++   G P +
Sbjct: 223 HGAKLCLEEAQELLSEMEVEGVRPNAATYGTYLYGLCRAKQVKSAWNFLQMLCQRGYPCN 282

Query: 614 VLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
              +N ++   C  G++     + + M +    PD
Sbjct: 283 SYCFNAVIHGFCHDGQVHKAVEVFDGMKKCGFVPD 317


>gi|326505288|dbj|BAK03031.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326529675|dbj|BAK04784.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 597

 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/256 (25%), Positives = 109/256 (42%), Gaps = 11/256 (4%)

Query: 414 AIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNN 472
           A+++F  MR + L PD      L +             +F  +  A     + M+     
Sbjct: 128 AVRVFDHMRAEGLAPDAHACTALLTSLARARMTATARRVFDGMGRA----GVAMN----- 178

Query: 473 IQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIF 532
             H + +M ++    G       L+     +  PL   ++NT +   V     + AM + 
Sbjct: 179 -THVYNAMLHVCLKAGDAARAEALMTRMDATGVPLDLFSFNTAIALYVRKGMQYEAMCVR 237

Query: 533 KQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDY 592
            +M   G+  +  T+N +I         K AS L   MV  G  P T+TYT L+      
Sbjct: 238 DRMANDGVEADIVTWNTVIHGMCKEGRMKEASQLHRDMVAAGIEPDTVTYTTLVDGYCRA 297

Query: 593 GDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTC 652
           GD  EA+NL  ++   G+   V  YN I++K CE G++  +  ++ +M + KVQ D  TC
Sbjct: 298 GDVGEAMNLRAVMEARGMLPGVATYNAIIRKLCEDGKMKEVNGLLSEMDERKVQADHVTC 357

Query: 653 HFVFSGYVNCGFHNSA 668
           + + + Y   G   SA
Sbjct: 358 NTLINSYSKKGDMPSA 373



 Score = 65.1 bits (157), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 88/207 (42%), Gaps = 3/207 (1%)

Query: 483 LLKALGAEGMIRELIQYFCDSKTPLGTPTYNT---VLHSLVEAQESHRAMEIFKQMKTCG 539
           LL AL   G   + ++ F   +     P  +    +L SL  A+ +  A  +F  M   G
Sbjct: 115 LLLALAQGGRAGDAVRVFDHMRAEGLAPDAHACTALLTSLARARMTATARRVFDGMGRAG 174

Query: 540 IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEAL 599
           +  N   YN M+  C        A AL++ M   G      ++   I + +  G   EA+
Sbjct: 175 VAMNTHVYNAMLHVCLKAGDAARAEALMTRMDATGVPLDLFSFNTAIALYVRKGMQYEAM 234

Query: 600 NLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
            + D ++ +G+  D++ +NT++   C++GR+     +   M    ++PD  T   +  GY
Sbjct: 235 CVRDRMANDGVEADIVTWNTVIHGMCKEGRMKEASQLHRDMVAAGIEPDTVTYTTLVDGY 294

Query: 660 VNCGFHNSAMEALQVLSMRMLCEEVST 686
              G    AM    V+  R +   V+T
Sbjct: 295 CRAGDVGEAMNLRAVMEARGMLPGVAT 321



 Score = 58.9 bits (141), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 71/162 (43%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           T+NTV+H + +      A ++ + M   GI P+  TY  ++D          A  L ++M
Sbjct: 251 TWNTVIHGMCKEGRMKEASQLHRDMVAAGIEPDTVTYTTLVDGYCRAGDVGEAMNLRAVM 310

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
              G  P   TY A+I+ L + G   E   LL  +    +  D +  NT++    +KG +
Sbjct: 311 EARGMLPGVATYNAIIRKLCEDGKMKEVNGLLSEMDERKVQADHVTCNTLINSYSKKGDM 370

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEAL 672
                +  +M ++ +Q D  T   +  G+      + A EAL
Sbjct: 371 PSACKVKTRMMESGLQLDQFTYKALIHGFSKAKQLDEAKEAL 412



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 67/362 (18%), Positives = 144/362 (39%), Gaps = 59/362 (16%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLR-NGMEVLKIM 354
           ++ ++H C +  ++  AE LM +M + G+     +++  I A+   +G++   M V   M
Sbjct: 182 YNAMLHVCLKAGDAARAEALMTRMDATGVPLDLFSFNTAI-ALYVRKGMQYEAMCVRDRM 240

Query: 355 QQNNLKPQDSTIAT-LSVECSKALELDLAEALLDQISRCTNPKPFSAFL---AACDTMDK 410
             + ++    T  T +   C +    + ++   D ++    P   +        C   D 
Sbjct: 241 ANDGVEADIVTWNTVIHGMCKEGRMKEASQLHRDMVAAGIEPDTVTYTTLVDGYCRAGDV 300

Query: 411 PERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
            E A+ + A M  + + P + TY  +           E+G M       K +N +  +M 
Sbjct: 301 GE-AMNLRAVMEARGMLPGVATYNAIIRKL------CEDGKM-------KEVNGLLSEMD 346

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQY---FCDSKTPLGTPTYNTVLHSLVEAQESH 526
              +Q  H++   L+ +   +G +    +      +S   L   TY  ++H   +A++  
Sbjct: 347 ERKVQADHVTCNTLINSYSKKGDMPSACKVKTRMMESGLQLDQFTYKALIHGFSKAKQLD 406

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
            A E   +M   G  PN + ++ ++D                     GFY +        
Sbjct: 407 EAKEALFEMMGAGFSPNYSVFSWLVD---------------------GFYKRN------- 438

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
                  + D  L + D +   G+P D  +Y +++++ C+K  +D+ + ++ QM    ++
Sbjct: 439 -------NADAVLLIPDELMKRGLPPDKSVYRSLIRRLCKKRLVDLAQKVLHQMQGKGLE 491

Query: 647 PD 648
            D
Sbjct: 492 AD 493



 Score = 41.2 bits (95), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 57/282 (20%), Positives = 103/282 (36%), Gaps = 33/282 (11%)

Query: 111 RMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAK 170
           R M    I  +   Y  ++   C+ G + EA NL   +  R G+ P +  YN+ +    +
Sbjct: 273 RDMVAAGIEPDTVTYTTLVDGYCRAGDVGEAMNLRAVMEAR-GMLPGVATYNAIIRKLCE 331

Query: 171 LHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH-YSLSIFS 229
              M   N  L  MD R V  + VT   L+     + ++ +  ++    ++    L  F+
Sbjct: 332 DGKMKEVNGLLSEMDERKVQADHVTCNTLINSYSKKGDMPSACKVKTRMMESGLQLDQFT 391

Query: 230 LRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVM 289
            +  +  F++ + L  A E L       MMG  +                       P  
Sbjct: 392 YKALIHGFSKAKQLDEAKEAL-----FEMMGAGFS----------------------PNY 424

Query: 290 KVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGME 349
            V  W    ++    +  N+     +  ++   GL P    Y   IR +   R +    +
Sbjct: 425 SVFSW----LVDGFYKRNNADAVLLIPDELMKRGLPPDKSVYRSLIRRLCKKRLVDLAQK 480

Query: 350 VLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR 391
           VL  MQ   L+      A+L+     A +L  A   L+ +++
Sbjct: 481 VLHQMQGKGLEADCLVYASLAYAQLTAGKLAAASDTLNDMAK 522


>gi|356503440|ref|XP_003520516.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41720-like [Glycine max]
          Length = 832

 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 82/374 (21%), Positives = 158/374 (42%), Gaps = 24/374 (6%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ +I+A GR      A  +M  M    + PS  TY+  I A  S    +  + V K M
Sbjct: 188 TYNAIINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLINACGSSGNWKEALNVCKKM 247

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDK 410
            +N + P   T   +        +   A +   ++ + T+ +P     +  +     + +
Sbjct: 248 TENGVGPDLVTHNIILSAFKSGAQYSKALSYF-ELMKGTHIRPDTTTLNIVIHCLVKLRQ 306

Query: 411 PERAIKIFAKMRQK---LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMD 467
            ++AI+IF  MR+K     PD+ T+  +  L+          ++  QV++ +   A  M 
Sbjct: 307 YDKAIEIFNSMREKKSECTPDVVTFTSIIHLY----------SVCGQVENCEA--AFNM- 353

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQE 524
           M    ++ + +S   L+ A  A GM  E   +F + K     P   +Y ++L++   +Q+
Sbjct: 354 MIAEGLKPNIVSYNALIGAYAARGMDNEAHLFFNEIKQNGFRPDIVSYTSLLNAYGRSQK 413

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
            H+A +IF +MK   + PN  +YN +ID          A  ++  M ++G  P  ++   
Sbjct: 414 PHKARQIFDRMKRNKLKPNLVSYNALIDAYGSNGLLADAIKILREMEQEGIQPNVVSICT 473

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
           L+          +   +L    + GI  + + YN  +      G  D    + + M + K
Sbjct: 474 LLAACGRCSRKVKIDTVLTAAEMRGIKLNTVAYNAAIGSCMNVGEYDKAIGLYKSMRKKK 533

Query: 645 VQPDPSTCHFVFSG 658
           ++ D  T   + SG
Sbjct: 534 IKTDSVTYTVLISG 547



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 78/412 (18%), Positives = 158/412 (38%), Gaps = 59/412 (14%)

Query: 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
           R +++++I+ACG + N   A  +  +M   G+ P   T++  + A  S       +   +
Sbjct: 221 RSTYNNLINACGSSGNWKEALNVCKKMTENGVGPDLVTHNIILSAFKSGAQYSKALSYFE 280

Query: 353 IMQQNNLKPQDSTIATLSVECSKALE-----LDLAEALLDQISRCT-------------- 393
           +M+  +++P D+T   + + C   L      +++  ++ ++ S CT              
Sbjct: 281 LMKGTHIRP-DTTTLNIVIHCLVKLRQYDKAIEIFNSMREKKSECTPDVVTFTSIIHLYS 339

Query: 394 ----------------------NPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIR 430
                                 N   ++A + A         A   F +++Q   RPDI 
Sbjct: 340 VCGQVENCEAAFNMMIAEGLKPNIVSYNALIGAYAARGMDNEAHLFFNEIKQNGFRPDIV 399

Query: 431 TYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAE 490
           +Y  L + +G    P++   +F +             M RN ++ + +S   L+ A G+ 
Sbjct: 400 SYTSLLNAYGRSQKPHKARQIFDR-------------MKRNKLKPNLVSYNALIDAYGSN 446

Query: 491 GMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTC---GIPPNAATY 547
           G++ + I+   + +     P   ++   L       R ++I   +      GI  N   Y
Sbjct: 447 GLLADAIKILREMEQEGIQPNVVSICTLLAACGRCSRKVKIDTVLTAAEMRGIKLNTVAY 506

Query: 548 NIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSL 607
           N  I  C  +  +  A  L   M +      ++TYT LI        + EAL+ ++ +  
Sbjct: 507 NAAIGSCMNVGEYDKAIGLYKSMRKKKIKTDSVTYTVLISGCCKMSKYGEALSFMEEIMH 566

Query: 608 EGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
             +P    +Y++ +    ++G+I   E     M  +   PD  T   +   Y
Sbjct: 567 LKLPLSKEVYSSAICAYSKQGQIVEAESTFNLMKSSGCYPDVVTYTAMLDAY 618



 Score = 67.0 bits (162), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 72/351 (20%), Positives = 145/351 (41%), Gaps = 55/351 (15%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           S++ +++A GR+Q    A Q+  +M+   L+P+  +Y+  I A  S+  L + +++L+ M
Sbjct: 400 SYTSLLNAYGRSQKPHKARQIFDRMKRNKLKPNLVSYNALIDAYGSNGLLADAIKILREM 459

Query: 355 QQNNLKPQDSTIATLSV---ECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKP 411
           +Q  ++P   +I TL      CS+ +++D      +      N   ++A + +C  + + 
Sbjct: 460 EQEGIQPNVVSICTLLAACGRCSRKVKIDTVLTAAEMRGIKLNTVAYNAAIGSCMNVGEY 519

Query: 412 ERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471
           ++AI ++  MR+K    I+T  + +++                                 
Sbjct: 520 DKAIGLYKSMRKK---KIKTDSVTYTVL-------------------------------- 544

Query: 472 NIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEI 531
                 IS    +   G      E I +    K PL    Y++ + +  +  +   A   
Sbjct: 545 ------ISGCCKMSKYGEALSFMEEIMHL---KLPLSKEVYSSAICAYSKQGQIVEAEST 595

Query: 532 FKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLD 591
           F  MK+ G  P+  TY  M+D  +    ++ A AL   M        T+   AL++    
Sbjct: 596 FNLMKSSGCYPDVVTYTAMLDAYNAAENWEKAYALFEEMEASSIKLDTIACAALMRSFNK 655

Query: 592 YGDFDEALNLLDLVSLEGIP-HDVLLYNTILKKACE-----KGRIDVIEFI 636
            G     L+L + +  + IP  D + +  +   AC      +  +D+I++I
Sbjct: 656 GGQPGRVLSLAESMREKEIPFSDTIFFEMV--SACSILQDWRTAVDMIKYI 704



 Score = 66.2 bits (160), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 124/599 (20%), Positives = 228/599 (38%), Gaps = 138/599 (23%)

Query: 104 LFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNS 163
            F M+ WR   + E       Y  ++ A  + G    A N++  +  R  I P    YN+
Sbjct: 174 FFEMQEWRCKPDVET------YNAIINAHGRAGQWRWAMNIMDDM-LRAAIPPSRSTYNN 226

Query: 164 FLGACAKLHSMVHA-NLCLDLMDSRMVGKNEVTYTELLKL----AVWQKNLSAVHEIWED 218
            + AC    +   A N+C  + ++  VG + VT+  +L      A + K LS    +   
Sbjct: 227 LINACGSSGNWKEALNVCKKMTENG-VGPDLVTHNIILSAFKSGAQYSKALSYFELMKGT 285

Query: 219 YIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLD 278
           +I+       +L   +    +LR    A E    M                 R + S   
Sbjct: 286 HIRP---DTTTLNIVIHCLVKLRQYDKAIEIFNSM-----------------REKKSECT 325

Query: 279 IPIPLNALPVMKVLRWSFSDVIH---ACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFI 335
             +             +F+ +IH    CG+ +N   A  +M+   + GL+P+  +Y+  I
Sbjct: 326 PDVV------------TFTSIIHLYSVCGQVENCEAAFNMMI---AEGLKPNIVSYNALI 370

Query: 336 RAIVSDRGLRNGMEVL-KIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTN 394
            A  + RG+ N   +    ++QN  +P                         D +S    
Sbjct: 371 GAYAA-RGMDNEAHLFFNEIKQNGFRP-------------------------DIVS---- 400

Query: 395 PKPFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFS 453
              +++ L A     KP +A +IF +M R KL+P++ +Y  L   +G+       G +  
Sbjct: 401 ---YTSLLNAYGRSQKPHKARQIFDRMKRNKLKPNLVSYNALIDAYGS------NGLL-- 449

Query: 454 QVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGA---EGMIRELIQYFCDSKTPLGTP 510
             D+ K    I  +M +  IQ + +S+  LL A G    +  I  ++         L T 
Sbjct: 450 -ADAIK----ILREMEQEGIQPNVVSICTLLAACGRCSRKVKIDTVLTAAEMRGIKLNTV 504

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID-CCSIIR----------- 558
            YN  + S +   E  +A+ ++K M+   I  ++ TY ++I  CC + +           
Sbjct: 505 AYNAAIGSCMNVGEYDKAIGLYKSMRKKKIKTDSVTYTVLISGCCKMSKYGEALSFMEEI 564

Query: 559 ----------------CFKS-------ASALVSMMVRDGFYPQTMTYTALIKILLDYGDF 595
                           C  S       A +  ++M   G YP  +TYTA++       ++
Sbjct: 565 MHLKLPLSKEVYSSAICAYSKQGQIVEAESTFNLMKSSGCYPDVVTYTAMLDAYNAAENW 624

Query: 596 DEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHF 654
           ++A  L + +    I  D +    +++   + G+   +  + E M + ++ P   T  F
Sbjct: 625 EKAYALFEEMEASSIKLDTIACAALMRSFNKGGQPGRVLSLAESMREKEI-PFSDTIFF 682



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/177 (23%), Positives = 74/177 (41%), Gaps = 6/177 (3%)

Query: 489 AEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYN 548
           A G+  E+ ++ C         TYN ++++   A +   AM I   M    IPP+ +TYN
Sbjct: 170 ARGLFFEMQEWRCKPDVE----TYNAIINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYN 225

Query: 549 IMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLE 608
            +I+ C     +K A  +   M  +G  P  +T+  ++        + +AL+  +L+   
Sbjct: 226 NLINACGSSGNWKEALNVCKKMTENGVGPDLVTHNIILSAFKSGAQYSKALSYFELMKGT 285

Query: 609 GIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ--PDPSTCHFVFSGYVNCG 663
            I  D    N ++    +  + D    I   M + K +  PD  T   +   Y  CG
Sbjct: 286 HIRPDTTTLNIVIHCLVKLRQYDKAIEIFNSMREKKSECTPDVVTFTSIIHLYSVCG 342



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 72/167 (43%), Gaps = 2/167 (1%)

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           YN ++        + +A  +F +M+     P+  TYN +I+       ++ A  ++  M+
Sbjct: 154 YNMMIRLHARHNRTDQARGLFFEMQEWRCKPDVETYNAIINAHGRAGQWRWAMNIMDDML 213

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
           R    P   TY  LI      G++ EALN+   ++  G+  D++ +N IL       +  
Sbjct: 214 RAAIPPSRSTYNNLINACGSSGNWKEALNVCKKMTENGVGPDLVTHNIILSAFKSGAQYS 273

Query: 632 VIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678
                 E M    ++PD +T + V    V    ++ A+E     SMR
Sbjct: 274 KALSYFELMKGTHIRPDTTTLNIVIHCLVKLRQYDKAIEIFN--SMR 318


>gi|298712109|emb|CBJ32990.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 650

 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 120/562 (21%), Positives = 217/562 (38%), Gaps = 81/562 (14%)

Query: 160 VYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDY 219
            YNS L + AK      A    D M S  V  +  T++ L++      N++   E+  + 
Sbjct: 60  AYNSALSSIAKSGRWREALALRDRMLSEGVRLDGYTFSALIEACSKGGNVAKGVELLREM 119

Query: 220 IK-HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAM------MGKLYI--NRTSEG 270
           +    +   FS    +  F R  D K+A   L+ MVA  +       G L      + E 
Sbjct: 120 VDAGVARDCFSYNAALHGFVRNGDSKNALLMLEDMVADGVRPDAITYGTLLACCGNSGEW 179

Query: 271 RLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHT 330
           +L  S +D        P      +SFS +I ACG+     LA + +  M++ G  P+ H 
Sbjct: 180 KLCMSLMDRMRSEGITPNA----YSFSPLIKACGKEGRWALAVKTLEDMEASGPTPNEHN 235

Query: 331 YDGFIRAIVSDRGLRNGMEVLKIMQQNNLK----PQDSTIATLSVE-CSKALELDLAEAL 385
           +   I A  +       + ++  ++   L     P  +T+    ++ C++A   D   AL
Sbjct: 236 WLMAIGACGNAGQWEEALRLIDKLEALALGGEGVPMSTTMYNFGIDACARAGRWDQGVAL 295

Query: 386 LDQISRCTNP------KPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSL 438
           L+++   +NP      + +S  + AC      E A+    +MR   L P    Y    S 
Sbjct: 296 LERMK--SNPATPPDAQTYSYLIDACAKDANLEDALAYLTEMRAVGLAPTFFAYISAMSA 353

Query: 439 FGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIR---- 494
              V   ++E    S +D          +MA+  +     S  N++ A G +G +     
Sbjct: 354 I-KVAGQWKEA--LSLLD----------EMAKGRLISDVFSFYNVVDAYGKDGQLARTLV 400

Query: 495 --------------------------------ELIQYFCDSKTPLGTPTYNTVLHSLVEA 522
                                           EL++   ++   L   ++N ++ +    
Sbjct: 401 QTSANPTEIAADSENEMRSDADLNAWRAEDPDELVKRMENNGVELDVMSFNILIDACARG 460

Query: 523 QESHRAMEIFKQMKTCGIPPNAATYNIMIDCC--SIIRCFKSASALVSMMVRDGFYPQTM 580
                A  +  +MK+ G+ PN+ +YN +I  C       ++ A  L+  M + G  P  +
Sbjct: 461 GSHWAAARLLTKMKSLGLRPNSLSYNPIIHSCRGGTDEEWRLALDLLDEMRKSGLTPDVI 520

Query: 581 TYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQM 640
           ++   I      GD+  +LNL   + +EG+  D+L YN ++  AC KG        +E +
Sbjct: 521 SFNTAITSCAKAGDWRRSLNLFAGMKVEGVTPDILSYNAVI-SACAKG--GQWRIGLELL 577

Query: 641 HQNKVQPDPSTCHFVFSGYVNC 662
            + +  P        ++  +NC
Sbjct: 578 AKVRADPTLEANQRTYTSAINC 599



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/220 (23%), Positives = 94/220 (42%), Gaps = 11/220 (5%)

Query: 460 RINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVL 516
           R+  +   +AR    +S IS     K  GA G  RE   L+    +   PL +  YN+ L
Sbjct: 9   RVRKVSKRIARTTRHNSFISTA---KVRGARGQWREVLRLLDKMAEDGIPLNSYAYNSAL 65

Query: 517 HSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFY 576
            S+ ++     A+ +  +M + G+  +  T++ +I+ CS          L+  MV  G  
Sbjct: 66  SSIAKSGRWREALALRDRMLSEGVRLDGYTFSALIEACSKGGNVAKGVELLREMVDAGVA 125

Query: 577 PQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFI 636
               +Y A +   +  GD   AL +L+ +  +G+  D + Y T+L      G   +   +
Sbjct: 126 RDCFSYNAALHGFVRNGDSKNALLMLEDMVADGVRPDAITYGTLLACCGNSGEWKLCMSL 185

Query: 637 IEQMHQNKVQPDPSTCHFVFSGYVN-CGFHNSAMEALQVL 675
           +++M    + P+     + FS  +  CG       A++ L
Sbjct: 186 MDRMRSEGITPN----AYSFSPLIKACGKEGRWALAVKTL 221



 Score = 49.7 bits (117), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 75/152 (49%), Gaps = 7/152 (4%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAI--VSDRGLRNGMEVLK 352
           SF+ +I AC R  +   A +L+ +M+SLGL+P+S +Y+  I +    +D   R  +++L 
Sbjct: 449 SFNILIDACARGGSHWAAARLLTKMKSLGLRPNSLSYNPIIHSCRGGTDEEWRLALDLLD 508

Query: 353 IMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQIS-RCTNPK--PFSAFLAACDTMD 409
            M+++ L P   +  T    C+KA +   +  L   +      P    ++A ++AC    
Sbjct: 509 EMRKSGLTPDVISFNTAITSCAKAGDWRRSLNLFAGMKVEGVTPDILSYNAVISACAKGG 568

Query: 410 KPERAIKIFAKMRQK--LRPDIRTYELLFSLF 439
           +    +++ AK+R    L  + RTY    + F
Sbjct: 569 QWRIGLELLAKVRADPTLEANQRTYTSAINCF 600


>gi|357140400|ref|XP_003571756.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Brachypodium distachyon]
          Length = 673

 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 85/375 (22%), Positives = 150/375 (40%), Gaps = 26/375 (6%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           F+ VI  C        A +L   M S G  P +HTY   I  +     L + M++L+ M+
Sbjct: 311 FNTVIGRCLLDGKLKEAAELYETMGSKGCPPDAHTYSILIHGLCKLGRLGSAMKLLREME 370

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKPE 412
                P   T   L     +    D   A+L+ +S      N + ++  + A     + +
Sbjct: 371 DKGFAPSIVTYTILLHSFCRNGMWDNIRAMLEVMSDKGLSMNLEGYNGMICAVCKDRRMD 430

Query: 413 RAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQ------VDSAKRINAIE 465
            A++   +M+ Q  +PDI TY  +     N N   E   +F        V +A   N + 
Sbjct: 431 DAMRFMQEMKSQGYKPDICTYNTIIYHLCNNNQMEEAEYLFENLLHEGVVANAITYNTLI 490

Query: 466 MDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQES 525
             + RN      IS+ N            +++ + C     L   +YN ++ +L      
Sbjct: 491 HALLRNGSWQDAISLAN------------DMVLHGCS----LDIVSYNGLIKALCRDGNV 534

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
            R++ +  +M   GI PN  +YN++I      R  + A  L   M+     P  +TY  L
Sbjct: 535 DRSIMLLSEMAEKGIKPNNVSYNLLISELCKTRRVRDALELSKEMLNQELTPDIVTYNTL 594

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           I  L   G    ALNLL+ +  E +  D++ YN ++   C+   +     ++ +   + +
Sbjct: 595 INGLCKMGWMHAALNLLEKLHNEDVHADIITYNILISWHCKARLLHDASMLLNRAVTSGI 654

Query: 646 QPDPSTCHFVFSGYV 660
            P+  T   +   +V
Sbjct: 655 TPNERTWGIMVQNFV 669



 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 84/394 (21%), Positives = 164/394 (41%), Gaps = 22/394 (5%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           +  VIHA         A  L+ +M  +G     +T++  +  + +   LR    ++  M 
Sbjct: 210 YQTVIHALCAQGGVNEAATLLDEMFLMGCSADVNTFNDIVHGLCTLGRLREAARLVDRMM 269

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAI 415
                P   T   L      A +++ A  +L ++    N   F+  +  C    K + A 
Sbjct: 270 IRGCVPNAITYGFLLKGLCLASQVEEARTMLGRVPE-LNVVLFNTVIGRCLLDGKLKEAA 328

Query: 416 KIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQ 474
           +++  M  K   PD  TY +L      ++   + G + S +   +       +M      
Sbjct: 329 ELYETMGSKGCPPDAHTYSIL------IHGLCKLGRLGSAMKLLR-------EMEDKGFA 375

Query: 475 HSHISMKNLLKALGAEGM---IRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEI 531
            S ++   LL +    GM   IR +++   D    +    YN ++ ++ + +    AM  
Sbjct: 376 PSIVTYTILLHSFCRNGMWDNIRAMLEVMSDKGLSMNLEGYNGMICAVCKDRRMDDAMRF 435

Query: 532 FKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLD 591
            ++MK+ G  P+  TYN +I         + A  L   ++ +G     +TY  LI  LL 
Sbjct: 436 MQEMKSQGYKPDICTYNTIIYHLCNNNQMEEAEYLFENLLHEGVVANAITYNTLIHALLR 495

Query: 592 YGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
            G + +A++L + + L G   D++ YN ++K  C  G +D    ++ +M +  ++P+  +
Sbjct: 496 NGSWQDAISLANDMVLHGCSLDIVSYNGLIKALCRDGNVDRSIMLLSEMAEKGIKPNNVS 555

Query: 652 CHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVS 685
            + + S          A+E    LS  ML +E++
Sbjct: 556 YNLLISELCKTRRVRDALE----LSKEMLNQELT 585



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/266 (22%), Positives = 116/266 (43%), Gaps = 17/266 (6%)

Query: 411 PERAIKIFAKM--RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
           P RA+ +  ++  R  + P  R+Y  + + F   +   +  +++ ++    R+       
Sbjct: 116 PGRALHLLDQLPHRFAVSPSFRSYNTVLAAFARADCHTDVLSLYRRMVHRDRVPPTTFTF 175

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRA 528
           +      +  ++  L +A  A  M+R + ++ C   T L    Y TV+H+L      + A
Sbjct: 176 SI-----AARALCRLGRADEALTMLRSMARHGCVPDTVL----YQTVIHALCAQGGVNEA 226

Query: 529 MEIFKQMKTCGIPPNAATYN-IMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
             +  +M   G   +  T+N I+   C++ R  ++A  +  MM+R G  P  +TY  L+K
Sbjct: 227 ATLLDEMFLMGCSADVNTFNDIVHGLCTLGRLREAARLVDRMMIR-GCVPNAITYGFLLK 285

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
            L      +EA  +L  V       +V+L+NT++ +    G++     + E M      P
Sbjct: 286 GLCLASQVEEARTMLGRVP----ELNVVLFNTVIGRCLLDGKLKEAAELYETMGSKGCPP 341

Query: 648 DPSTCHFVFSGYVNCGFHNSAMEALQ 673
           D  T   +  G    G   SAM+ L+
Sbjct: 342 DAHTYSILIHGLCKLGRLGSAMKLLR 367



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 75/170 (44%), Gaps = 5/170 (2%)

Query: 496 LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMK-TCGIPPNAATYNIMIDCC 554
           L++    S+ P   P   ++L  L  +    RA+ +  Q+     + P+  +YN ++   
Sbjct: 90  LLESLPPSRVP---PLRESLLIPLFRSLAPGRALHLLDQLPHRFAVSPSFRSYNTVLAAF 146

Query: 555 SIIRCFKSASALVSMMV-RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHD 613
           +   C     +L   MV RD   P T T++   + L   G  DEAL +L  ++  G   D
Sbjct: 147 ARADCHTDVLSLYRRMVHRDRVPPTTFTFSIAARALCRLGRADEALTMLRSMARHGCVPD 206

Query: 614 VLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
            +LY T++   C +G ++    ++++M       D +T + +  G    G
Sbjct: 207 TVLYQTVIHALCAQGGVNEAATLLDEMFLMGCSADVNTFNDIVHGLCTLG 256


>gi|22128712|gb|AAM92824.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
           Group]
          Length = 878

 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 122/580 (21%), Positives = 227/580 (39%), Gaps = 32/580 (5%)

Query: 125 YLLMMQALCKGGYLE---EASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCL 181
           Y +++   C+ G L+    A   +   G R       P+     G CA   +    ++ L
Sbjct: 95  YAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLK---GLCADKRTSDAMDIVL 151

Query: 182 DLMDSRMVGKNEVTYTELLKLAV----WQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSF 237
             M       +  +Y  LLK        Q+ L  +H + +D        + S    +  F
Sbjct: 152 RRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGF 211

Query: 238 TRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRL-RSSRLDIPIP-LNALPVMKVLR-- 293
            +  D   AY T   M+   ++  +    +    L ++  +D  +  LN +    V+   
Sbjct: 212 FKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDC 271

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
            +++ ++H    +     A   + +M+S G++P+  TY   +  +  +       ++   
Sbjct: 272 MTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDS 331

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMD 409
           M +  L+P  +T  TL    +    L    ALLD + R    +P    F+  + A    +
Sbjct: 332 MTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVR-NGIQPDHHVFNILICAYAKQE 390

Query: 410 KPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQ-VDSAKRINAIEMD 467
           K ++A+ +F+KMRQ  L P++  Y  +  +     +  +    F Q +D     N I   
Sbjct: 391 KVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNII--- 447

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHR 527
               ++ H   +     KA        ELI    D    L T  +N+++ S  +      
Sbjct: 448 -VYTSLIHGLCTCDKWDKA-------EELILEMLDRGICLNTIFFNSIIDSHCKEGRVIE 499

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           + ++F  M   G+ P+  TYN +ID C +      A+ L++ MV  G  P  +TY  LI 
Sbjct: 500 SEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLIN 559

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
                   D+AL L   +   G+  +++ YN IL+      R    + +   + ++  Q 
Sbjct: 560 GYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQL 619

Query: 648 DPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTL 687
           + ST + +  G       + A+   Q L +  L  E  T 
Sbjct: 620 ELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTF 659



 Score = 70.5 bits (171), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 130/611 (21%), Positives = 244/611 (39%), Gaps = 49/611 (8%)

Query: 58  QIVDALCRGERSRASHLLLNLGHAHHSLGAD----DFFHILNYCARSPDPLFVMETWRMM 113
            ++  LC   RS+ +  LL++       G+      +  +LN   +  D      T+  M
Sbjct: 168 NLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEM 227

Query: 114 EEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFL-GACAKLH 172
            ++ I  +   Y  ++ ALCK   +++A  ++  +  + G+ P    YNS L G C+   
Sbjct: 228 LDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTM-VKNGVMPDCMTYNSILHGYCSSGQ 286

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH-YSLSIFSLR 231
               A   L  M S  V  N VTY+ L+         +   +I++   K      I + R
Sbjct: 287 PK-EAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYR 345

Query: 232 KFVWSFTRLRDLKSAYETLQHMVALAMMGKLYI-NRTSEGRLRSSRLDIPIPLNALPVMK 290
             +  +     L   +  L  MV   +    ++ N       +  ++D      A+ V  
Sbjct: 346 TLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVD-----QAMLVFS 400

Query: 291 VLRWSFSDVIHACGRTQ-----NSGLAEQLML---QMQSLGLQPSSHTYDGFIRAIVS-D 341
            +R    +    C  T       SG  +  ML   QM   GL P+   Y   I  + + D
Sbjct: 401 KMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCD 460

Query: 342 RGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP---- 397
           +  +    +L+++ +          + +   C +   ++ +E L D + R    KP    
Sbjct: 461 KWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIE-SEKLFDLMVR-IGVKPDIIT 518

Query: 398 FSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQ-V 455
           ++  +  C    K + A K+ A M    ++PDI TY  L + +  V+   +   +F + V
Sbjct: 519 YNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMV 578

Query: 456 DSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTV 515
            S    N I  ++    + H+  +              +EL      S T L   TYN +
Sbjct: 579 SSGVSPNIITYNIILQGLFHTRRT-----------AAAKELYVSITKSGTQLELSTYNII 627

Query: 516 LHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFK--SASALVSMMVRD 573
           LH L +   +  A+ +F+ +    +     T+NIMI   ++++C +   A  L +    +
Sbjct: 628 LHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIG--ALLKCGRMDEAKDLFAAHSAN 685

Query: 574 GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG---RI 630
           G  P   TY+ + + L++ G  +E  +L   +   G   D  + N+I++K  ++G   R 
Sbjct: 686 GLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKLLQRGDITRA 745

Query: 631 DVIEFIIEQMH 641
               F+I++ H
Sbjct: 746 GTYLFMIDEKH 756



 Score = 46.2 bits (108), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 73/167 (43%), Gaps = 9/167 (5%)

Query: 528 AMEIFKQMKTCG---IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
           A+  + +M   G   + P   TY I+I CC          A +  +V+ GF    +T+T 
Sbjct: 73  AVSRYNRMARAGAGKVTPTVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTP 132

Query: 585 LIKILLDYGDFDEALNLL--DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642
           L+K L       +A++++   +  L  IP DV  YN +LK  C++ R      ++  M  
Sbjct: 133 LLKGLCADKRTSDAMDIVLRRMTELGCIP-DVFSYNNLLKGLCDENRSQEALELLHMMAD 191

Query: 643 NK---VQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           ++     PD  + + V +G+   G  + A      +  R +  +V T
Sbjct: 192 DRGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVT 238


>gi|357517409|ref|XP_003628993.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523015|gb|AET03469.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 819

 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 118/558 (21%), Positives = 219/558 (39%), Gaps = 54/558 (9%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y   + A CKGG ++EA  L   +GE  G+ P +  YN+ +    K   +  A +    M
Sbjct: 244 YATAINAYCKGGKIDEAVGLFLKMGEG-GVLPNVVTYNNLIDGLCKSGRLEEALMFKGRM 302

Query: 185 DSRMVGKNEVTYTELLK-LAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDL 243
               V  + VTY  L+  L  ++K   A   + E Y K +S + F     +  ++R  ++
Sbjct: 303 VENKVNPSLVTYGILVNGLVKFEKFDEANSVLVEMYSKGFSPNEFVFNALIDGYSRKGNM 362

Query: 244 KSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHAC 303
             A                        R+R       +  NA+        + + ++   
Sbjct: 363 DDAL-----------------------RVRDDMTLKGLKPNAV--------THNTLLQGF 391

Query: 304 GRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQD 363
            RT     AEQ++  + S  L  +       +  +       + ++++K +   N+K  D
Sbjct: 392 CRTNQMEQAEQVLEYLLSNVLSVNEDACSYVLHLLCKSSKFDSALKIVKALLLRNIKVND 451

Query: 364 STIATLS---VECSKALE-LDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFA 419
           S +  L     +C K LE +DL   L D+     N    +A L         E    +  
Sbjct: 452 SLLTLLVCGLCKCGKHLEAIDLWFRLADKKGLAANTTTSNALLYGLCERGNMEEVFPVCK 511

Query: 420 KMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHI 478
           +M ++ L  D  +Y  L  +FG   +         +++ A ++      M +   +    
Sbjct: 512 EMVERGLVLDGISYNTL--IFGCCKS--------GKIEEAFKLKE---KMMKQGFKPDTY 558

Query: 479 SMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQM 535
           +   L+K L  +G + ++ +   ++K     P   TY  +L     A     A+ +F ++
Sbjct: 559 TYNFLMKGLADKGKMDDVGRVLHEAKDHGVVPNIYTYALMLEGYCNADRIDNAVSLFNKL 618

Query: 536 KTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDF 595
               +  +   YNI+I   S    F  A  L   M     +P   TY+++I  +      
Sbjct: 619 VYNKVELSYVVYNILIAAHSKAGNFTEAFKLRDAMRSSNIHPTIFTYSSIIHGMCCNDLV 678

Query: 596 DEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFV 655
           +EA  + + +  EG+  +V  Y  ++   C+ G++D IE I+++M  N +QP+  T   +
Sbjct: 679 EEAKGIFEEMRNEGLMPNVFCYTALIGGYCKLGQMDQIESILQEMTSNCIQPNKITYTIM 738

Query: 656 FSGYVNCGFHNSAMEALQ 673
             GY   G    A + L 
Sbjct: 739 IDGYCKMGNTKEATKLLN 756



 Score = 66.6 bits (161), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 82/168 (48%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TYN ++  L ++     A+    +M    + P+  TY I+++       F  A++++  M
Sbjct: 278 TYNNLIDGLCKSGRLEEALMFKGRMVENKVNPSLVTYGILVNGLVKFEKFDEANSVLVEM 337

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
              GF P    + ALI      G+ D+AL + D ++L+G+  + + +NT+L+  C   ++
Sbjct: 338 YSKGFSPNEFVFNALIDGYSRKGNMDDALRVRDDMTLKGLKPNAVTHNTLLQGFCRTNQM 397

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678
           +  E ++E +  N +  +   C +V          +SA++ ++ L +R
Sbjct: 398 EQAEQVLEYLLSNVLSVNEDACSYVLHLLCKSSKFDSALKIVKALLLR 445



 Score = 58.9 bits (141), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 59/265 (22%), Positives = 110/265 (41%), Gaps = 12/265 (4%)

Query: 501 CDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCF 560
           C     +   TY T +++  +  +   A+ +F +M   G+ PN  TYN +ID        
Sbjct: 233 CRGGVLIDVYTYATAINAYCKGGKIDEAVGLFLKMGEGGVLPNVVTYNNLIDGLCKSGRL 292

Query: 561 KSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTI 620
           + A      MV +   P  +TY  L+  L+ +  FDEA ++L  +  +G   +  ++N +
Sbjct: 293 EEALMFKGRMVENKVNPSLVTYGILVNGLVKFEKFDEANSVLVEMYSKGFSPNEFVFNAL 352

Query: 621 LKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRML 680
           +     KG +D    + + M    ++P+  T + +  G+      N   +A QVL    L
Sbjct: 353 IDGYSRKGNMDDALRVRDDMTLKGLKPNAVTHNTLLQGFCRT---NQMEQAEQVL--EYL 407

Query: 681 CEEVSTLEEKRSDFEDLILAEDSEAESRILQFCEDSNENLAFTAALLQLRWCTIV----- 735
              V ++ E    +   +L + S+ +S +         N+    +LL L  C +      
Sbjct: 408 LSNVLSVNEDACSYVLHLLCKSSKFDSALKIVKALLLRNIKVNDSLLTLLVCGLCKCGKH 467

Query: 736 --GFPISWSLDRASGLEDSQTNSNS 758
                + + L    GL  + T SN+
Sbjct: 468 LEAIDLWFRLADKKGLAANTTTSNA 492



 Score = 48.1 bits (113), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 73/376 (19%), Positives = 152/376 (40%), Gaps = 21/376 (5%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           ++++  I+A  +      A  L L+M   G+ P+  TY+  I  +     L   +     
Sbjct: 242 YTYATAINAYCKGGKIDEAVGLFLKMGEGGVLPNVVTYNNLIDGLCKSGRLEEALMFKGR 301

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI-SRCTNPKPFSAFLAACDTMDKP- 411
           M +N + P   T   L     K  + D A ++L ++ S+  +P  F  F A  D   +  
Sbjct: 302 MVENKVNPSLVTYGILVNGLVKFEKFDEANSVLVEMYSKGFSPNEF-VFNALIDGYSRKG 360

Query: 412 --ERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMD- 467
             + A+++   M  K L+P+  T+  L   F   N          Q++ A+++    +  
Sbjct: 361 NMDDALRVRDDMTLKGLKPNAVTHNTLLQGFCRTN----------QMEQAEQVLEYLLSN 410

Query: 468 -MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESH 526
            ++ N    S++ +  L K+   +  ++ +++        +       ++  L +  +  
Sbjct: 411 VLSVNEDACSYV-LHLLCKSSKFDSALK-IVKALLLRNIKVNDSLLTLLVCGLCKCGKHL 468

Query: 527 RAMEI-FKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
            A+++ F+     G+  N  T N ++         +    +   MV  G     ++Y  L
Sbjct: 469 EAIDLWFRLADKKGLAANTTTSNALLYGLCERGNMEEVFPVCKEMVERGLVLDGISYNTL 528

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           I      G  +EA  L + +  +G   D   YN ++K   +KG++D +  ++ +   + V
Sbjct: 529 IFGCCKSGKIEEAFKLKEKMMKQGFKPDTYTYNFLMKGLADKGKMDDVGRVLHEAKDHGV 588

Query: 646 QPDPSTCHFVFSGYVN 661
            P+  T   +  GY N
Sbjct: 589 VPNIYTYALMLEGYCN 604



 Score = 47.8 bits (112), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 55/135 (40%)

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
           H A + F    + G+ P+  + N ++           +  +   M R G      TY   
Sbjct: 188 HWAFDTFMLFTSKGVFPSLKSCNFLMSSLVKSNELHKSFRVFDAMCRGGVLIDVYTYATA 247

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           I      G  DEA+ L   +   G+  +V+ YN ++   C+ GR++       +M +NKV
Sbjct: 248 INAYCKGGKIDEAVGLFLKMGEGGVLPNVVTYNNLIDGLCKSGRLEEALMFKGRMVENKV 307

Query: 646 QPDPSTCHFVFSGYV 660
            P   T   + +G V
Sbjct: 308 NPSLVTYGILVNGLV 322


>gi|125600921|gb|EAZ40497.1| hypothetical protein OsJ_24952 [Oryza sativa Japonica Group]
          Length = 766

 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 78/344 (22%), Positives = 144/344 (41%), Gaps = 26/344 (7%)

Query: 314 QLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVEC 373
           +L+  M+  G+ P  +TY+  I         +   +V   M+ +  +P   T  +L    
Sbjct: 211 ELVASMKEHGVAPDRYTYNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVY 270

Query: 374 SKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKP---ERAIKIFAKMRQK-LRPDI 429
            KA   D A  ++ ++ R   P     + +   +  K    E+A+ +  +M  K ++PD+
Sbjct: 271 GKARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGMKPDV 330

Query: 430 RTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINA--IEMD-MARNNIQHSHISMKNLLKA 486
            TY  L S                 +D A +I+A  +E D M RN  + +  +   L+K 
Sbjct: 331 VTYTTLIS----------------GLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKM 374

Query: 487 LGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPN 543
            G  G   E++  F + ++    P   T+NT+L    +         +FK+MK  G  P 
Sbjct: 375 HGVRGKFPEMMAVFDEFRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPE 434

Query: 544 AATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLD 603
             TY  +I   S    F  A  +   M+  G YP   TY A++  L   G +++A  L  
Sbjct: 435 RDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFA 494

Query: 604 LVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
            +       D   Y+++L       R+D ++ + + ++  +++P
Sbjct: 495 EMEERDCKPDEYSYSSLLHAYANAKRLDKMKALSDDIYSERIEP 538



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 78/356 (21%), Positives = 143/356 (40%), Gaps = 60/356 (16%)

Query: 374 SKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDKPERAIKIFAKM-RQKLRPD 428
           ++A  L  A ALLD       P P    ++A ++A     +   A+ +F +M    ++P 
Sbjct: 134 ARAGRLAEASALLD-----AAPGPDAGAYTALVSAFSRAGRFRDAVAVFRRMVDSGVQPA 188

Query: 429 IRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALG 488
           I TY ++  ++  +  P++E            +  +   M  + +     +   L+    
Sbjct: 189 IVTYNVVLHVYSKMAVPWKE------------VVELVASMKEHGVAPDRYTYNTLISCCR 236

Query: 489 AEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAA 545
              + +E  Q F + K     P   T+N++L    +A+    A+E+ ++M+  G PP+  
Sbjct: 237 RRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVV 296

Query: 546 TYNIMIDC---------------------------------CSIIRCFKSASALVSM--M 570
           TYN +I                                     + R  K  +A+V    M
Sbjct: 297 TYNSLISSYVKDGLLEQAVALKQEMEVKGMKPDVVTYTTLISGLDRAGKIDAAIVEYDEM 356

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           VR+G  P   TY ALIK+    G F E + + D     G   D++ +NT+L    + G  
Sbjct: 357 VRNGCKPNLCTYNALIKMHGVRGKFPEMMAVFDEFRSAGFVPDIVTWNTLLAVFGQNGLD 416

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
             +  + ++M +    P+  T   + S Y  CG  + AM+  + +    +  +VST
Sbjct: 417 SEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVST 472



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 112/542 (20%), Positives = 215/542 (39%), Gaps = 64/542 (11%)

Query: 150 ERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKL-AVWQKN 208
           + +G+ P    YN+ +  C +      A    D M +     ++VT+  LL +    +++
Sbjct: 217 KEHGVAPDRYTYNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKARRH 276

Query: 209 LSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRT- 267
             A+  I E        S+ +    + S+ +   L+ A    Q M    M   +    T 
Sbjct: 277 DEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGMKPDVVTYTTL 336

Query: 268 SEGRLRSSRLDIPI----------------PLNALPVMKVLRWSFSDVIHACGRTQNSGL 311
             G  R+ ++D  I                  NAL  M  +R  F +++           
Sbjct: 337 ISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGVRGKFPEMM----------- 385

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGME-VLKIMQQNNLKPQDSTIATLS 370
              +  + +S G  P   T++  + A+    GL + +  V K M++    P+  T  +L 
Sbjct: 386 --AVFDEFRSAGFVPDIVTWNTLL-AVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLI 442

Query: 371 VECSKALELDLAEALLDQISRC---TNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LR 426
              S+    DLA  +  ++       +   ++A L+A     + E+A K+FA+M ++  +
Sbjct: 443 SSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCK 502

Query: 427 PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI------------------NAIEMDM 468
           PD  +Y  L   + N     ++    S    ++RI                  N  E + 
Sbjct: 503 PDEYSYSSLLHAYANAKR-LDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEK 561

Query: 469 ARNNIQHSHISMK-NLLKAL----GAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLV 520
           A   ++    S+  N+L A+    G   M+R+   ++    +S   L   TYN+++H   
Sbjct: 562 AFLELRQKRCSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYS 621

Query: 521 EAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTM 580
              +  +   I  ++K+ G+ P+  +YN +I         K AS L S M   G  P  +
Sbjct: 622 RLGDCEKCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVV 681

Query: 581 TYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQM 640
           TY   +K  +    F+EA+ L+  +  +G   +   YN+I++  C  G++   +  +  +
Sbjct: 682 TYNIFVKSYVSNSMFEEAIELVRYMVTQGCKPNERTYNSIVEGYCRNGKLTDAKIFVSNL 741

Query: 641 HQ 642
            Q
Sbjct: 742 PQ 743



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 74/385 (19%), Positives = 144/385 (37%), Gaps = 66/385 (17%)

Query: 326 PSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTI-------ATLSVECSKALE 378
           P +  Y   + A       R+ + V + M  + ++P   T        + ++V   + +E
Sbjct: 152 PDAGAYTALVSAFSRAGRFRDAVAVFRRMVDSGVQPAIVTYNVVLHVYSKMAVPWKEVVE 211

Query: 379 LDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFS 437
           L    A + +     +   ++  ++ C      + A ++F +M+     PD  T+  L  
Sbjct: 212 L---VASMKEHGVAPDRYTYNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLD 268

Query: 438 LFGNVNAPYEEGNMFSQVDSAKRINAIEM--DMARNNIQHSHISMKNLLKALGAEGMIRE 495
           ++G                  +   AIE+  +M R     S ++  +L+ +   +G++ +
Sbjct: 269 VYGKAR---------------RHDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQ 313

Query: 496 LIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI- 551
            +    + +     P   TY T++  L  A +   A+  + +M   G  PN  TYN +I 
Sbjct: 314 AVALKQEMEVKGMKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIK 373

Query: 552 ---------DCCSIIRCFKSA-------------------------SALVSMMVRDGFYP 577
                    +  ++   F+SA                         S +   M + G+ P
Sbjct: 374 MHGVRGKFPEMMAVFDEFRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIP 433

Query: 578 QTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFII 637
           +  TY +LI      G FD A+ +   +   GI  DV  YN +L      GR +  E + 
Sbjct: 434 ERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLF 493

Query: 638 EQMHQNKVQPDPSTCHFVFSGYVNC 662
            +M +   +PD  +   +   Y N 
Sbjct: 494 AEMEERDCKPDEYSYSSLLHAYANA 518



 Score = 49.7 bits (117), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 113/273 (41%), Gaps = 12/273 (4%)

Query: 105 FVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSF 164
             M+ ++ M E  I  +   Y  ++ AL +GG  E+A  L   + ER    P    Y+S 
Sbjct: 453 LAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEER-DCKPDEYSYSSL 511

Query: 165 LGACAKLHSMVHAN-LCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHY 223
           L A A    +     L  D+   R+   N +  T +L  +       A     E   K  
Sbjct: 512 LHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLELRQKRC 571

Query: 224 SLSIFSLRKFVWSFTRLRDLKSAYETLQHM--VALAMMGKLYINRTSEGRLRSSRLDIPI 281
           SL I  L   V  + + R ++   + L  M   A+ +    Y    S   + S   D   
Sbjct: 572 SLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATY---NSLMHMYSRLGDCEK 628

Query: 282 PLNALPVMKVL-----RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIR 336
             N L  +K       R+S++ VI+A GR      A +L  +M+  GL+P   TY+ F++
Sbjct: 629 CENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIFVK 688

Query: 337 AIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL 369
           + VS+      +E+++ M     KP + T  ++
Sbjct: 689 SYVSNSMFEEAIELVRYMVTQGCKPNERTYNSI 721


>gi|15228763|ref|NP_188886.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75223290|sp|Q6NQ83.1|PP247_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g22470, mitochondrial; Flags: Precursor
 gi|34365775|gb|AAQ65199.1| At3g22470 [Arabidopsis thaliana]
 gi|51968798|dbj|BAD43091.1| hypothetical protein [Arabidopsis thaliana]
 gi|332643122|gb|AEE76643.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 619

 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 87/405 (21%), Positives = 174/405 (42%), Gaps = 28/405 (6%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           ++  V++   ++ NS LA  L  +M+   ++ S   Y   I ++  D    + + +   M
Sbjct: 212 TYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEM 271

Query: 355 QQNNLKPQDSTIATL-SVECSKALELDLAEALLDQISRCTNPK--PFSAFLAACDTMDKP 411
           +   +K    T ++L    C+     D A+ L + I R   P    FSA +       K 
Sbjct: 272 EMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKL 331

Query: 412 ERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
             A +++ +M  + + PD  TY  L   F   N  +E   MF  + S       E D+  
Sbjct: 332 LEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVS----KGCEPDIVT 387

Query: 471 NNIQ-HSHISMKN------LLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQ 523
            +I  +S+   K       L + + ++G+I   I             TYNT++    ++ 
Sbjct: 388 YSILINSYCKAKRVDDGMRLFREISSKGLIPNTI-------------TYNTLVLGFCQSG 434

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
           + + A E+F++M + G+PP+  TY I++D          A  +   M +         Y 
Sbjct: 435 KLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYN 494

Query: 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
            +I  + +    D+A +L   +S +G+  DV+ YN ++   C+KG +   + +  +M ++
Sbjct: 495 IIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKED 554

Query: 644 KVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLE 688
              PD  T + +   ++      S++E ++ + +     + ST++
Sbjct: 555 GCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVCGFSADSSTIK 599



 Score = 76.6 bits (187), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 75/363 (20%), Positives = 156/363 (42%), Gaps = 28/363 (7%)

Query: 322 LGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDL 381
           LG +P + T+   +     +  +   + ++  M +   +P   T++TL         +  
Sbjct: 134 LGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSE 193

Query: 382 AEALLDQISRCT---NPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFS 437
           A  L+D++       +   +   L           A+ +F KM ++ ++  +  Y ++  
Sbjct: 194 ALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIV-- 251

Query: 438 LFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEG------ 491
               +++  ++G   S  D+    N +EM      I+   ++  +L+  L  +G      
Sbjct: 252 ----IDSLCKDG---SFDDALSLFNEMEM----KGIKADVVTYSSLIGGLCNDGKWDDGA 300

Query: 492 -MIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIM 550
            M+RE+I     +  P    T++ ++   V+  +   A E++ +M T GI P+  TYN +
Sbjct: 301 KMLREMIGR---NIIP-DVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSL 356

Query: 551 IDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGI 610
           ID      C   A+ +  +MV  G  P  +TY+ LI         D+ + L   +S +G+
Sbjct: 357 IDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGL 416

Query: 611 PHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAME 670
             + + YNT++   C+ G+++  + + ++M    V P   T   +  G  + G  N A+E
Sbjct: 417 IPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALE 476

Query: 671 ALQ 673
             +
Sbjct: 477 IFE 479



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 99/516 (19%), Positives = 205/516 (39%), Gaps = 85/516 (16%)

Query: 54  ATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFH--ILNYCARSPDPLFVMETWR 111
            T   +++ LC   R   + +L++     +    D+  +  +LN   +S +    ++ +R
Sbjct: 176 VTVSTLINGLCLKGRVSEALVLIDR-MVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFR 234

Query: 112 MMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKL 171
            MEE+ I  +   Y +++ +LCK G  ++A +L   + E  GI   +  Y+S +G     
Sbjct: 235 KMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEM-EMKGIKADVVTYSSLIGGLCND 293

Query: 172 HSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYSLSIFSL 230
                    L  M  R +  + VT++ L+ + V +  L    E++ + I +  +    + 
Sbjct: 294 GKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITY 353

Query: 231 RKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMK 290
              +  F +   L  A +    MV+                 +    DI           
Sbjct: 354 NSLIDGFCKENCLHEANQMFDLMVS-----------------KGCEPDI----------- 385

Query: 291 VLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEV 350
               ++S +I++  + +      +L  ++ S GL P++ TY+  +        L    E+
Sbjct: 386 ---VTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKEL 442

Query: 351 LKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDK 410
            + M    + P   ++ T  +             LLD +               CD   +
Sbjct: 443 FQEMVSRGVPP---SVVTYGI-------------LLDGL---------------CDN-GE 470

Query: 411 PERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
             +A++IF KM++ ++   I  Y ++  + G  NA        S+VD A    ++   ++
Sbjct: 471 LNKALEIFEKMQKSRMTLGIGIYNII--IHGMCNA--------SKVDDAW---SLFCSLS 517

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESH 526
              ++   ++   ++  L  +G + E    F   K    TP   TYN ++ + +      
Sbjct: 518 DKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLI 577

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKS 562
            ++E+ ++MK CG   +++T  ++ID  S  R  KS
Sbjct: 578 SSVELIEEMKVCGFSADSSTIKMVIDMLSDRRLDKS 613



 Score = 49.3 bits (116), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 92/228 (40%), Gaps = 8/228 (3%)

Query: 461 INAIEMDMARNNIQ-HSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSL 519
           +N IE DM    I  + +   K LL A    G   +L  Y  D      T T++T+++  
Sbjct: 98  LNGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKL-GYEPD------TITFSTLVNGF 150

Query: 520 VEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQT 579
                   A+ +  +M      P+  T + +I+   +      A  L+  MV  GF P  
Sbjct: 151 CLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDE 210

Query: 580 MTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQ 639
           +TY  ++  L   G+   AL+L   +    I   V+ Y+ ++   C+ G  D    +  +
Sbjct: 211 VTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNE 270

Query: 640 MHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTL 687
           M    ++ D  T   +  G  N G  +   + L+ +  R +  +V T 
Sbjct: 271 MEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTF 318


>gi|414591641|tpg|DAA42212.1| TPA: hypothetical protein ZEAMMB73_141452 [Zea mays]
          Length = 472

 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 78/316 (24%), Positives = 134/316 (42%), Gaps = 13/316 (4%)

Query: 359 LKPQDSTIATLSVECSKALELDLAEALLDQISRC---TNPKPFSAFLAACDTMDKPERAI 415
           L P   T A L   C++A   +LA A   Q+ R     +    S  L       + + A+
Sbjct: 73  LSPTSYTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRTDEAL 132

Query: 416 KIFAKMRQKLR--PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNI 473
            I      +L   PD+ +Y +L     N     +  N+   +     + + ++ +A N +
Sbjct: 133 DILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADNLLRMMAEGGTVCSPDV-VAYNTV 191

Query: 474 QHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFK 533
                   ++ KA     + +E++Q       P    TYN+V+H+L +A+   +A    +
Sbjct: 192 IDGFFKEGDVNKACD---LFKEMVQ----RGIPPDLVTYNSVVHALCKARAMDKAEAFLR 244

Query: 534 QMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYG 593
           QM    + PN  TYN +I   S    +K A  +   M R    P  +T + L+  L  YG
Sbjct: 245 QMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYG 304

Query: 594 DFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCH 653
              EA ++ D ++++G   DV  YN +L     KG +  +  + + M  + + PD  T +
Sbjct: 305 KIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFN 364

Query: 654 FVFSGYVNCGFHNSAM 669
                Y NCG  + AM
Sbjct: 365 VQIKAYANCGMLDKAM 380



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/256 (22%), Positives = 109/256 (42%), Gaps = 17/256 (6%)

Query: 412 ERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
            +A  +F +M Q+ + PD+ TY  +        A          +D A+   A    M  
Sbjct: 202 NKACDLFKEMVQRGIPPDLVTYNSVVHALCKARA----------MDKAE---AFLRQMVN 248

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHR 527
             +  ++ +  NL+    + G  +E ++ F + +     P   T + ++ SL +  +   
Sbjct: 249 KRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKE 308

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A ++F  M   G  P+  +YNIM++  +   C    + L  +M+ DG  P   T+   IK
Sbjct: 309 ARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVQIK 368

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
              + G  D+A+ + + +   G+  DV+ Y T++   C  G++D       QM    V P
Sbjct: 369 AYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAP 428

Query: 648 DPSTCHFVFSGYVNCG 663
           D    + +  G+   G
Sbjct: 429 DKYAYNCLIQGFCTHG 444



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 55/259 (21%), Positives = 107/259 (41%), Gaps = 16/259 (6%)

Query: 415 IKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI--NAIEMDMAR-N 471
           +++ A+      PD+  Y  +   F      ++EG++    D  K +    I  D+   N
Sbjct: 171 LRMMAEGGTVCSPDVVAYNTVIDGF------FKEGDVNKACDLFKEMVQRGIPPDLVTYN 224

Query: 472 NIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEI 531
           ++ H+    + + KA   E  +R+++    + +      TYN +++      +   A+ +
Sbjct: 225 SVVHALCKARAMDKA---EAFLRQMV----NKRVLPNNWTYNNLIYGYSSTGQWKEAVRV 277

Query: 532 FKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLD 591
           FK+M+   I P+  T ++++         K A  +   M   G  P   +Y  ++     
Sbjct: 278 FKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYAT 337

Query: 592 YGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
            G   +  +L DL+  +GI  D   +N  +K     G +D    I  +M  + V+PD  T
Sbjct: 338 KGCLVDMTDLFDLMLGDGIAPDFYTFNVQIKAYANCGMLDKAMIIFNEMRDHGVKPDVVT 397

Query: 652 CHFVFSGYVNCGFHNSAME 670
              V +     G  + AME
Sbjct: 398 YRTVIAALCRIGKMDDAME 416



 Score = 62.4 bits (150), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 82/179 (45%), Gaps = 7/179 (3%)

Query: 515 VLHSLVEAQESHRAMEIF-KQMKTCGIPPNAATYNIMIDCCSIIRCFKSASA--LVSMMV 571
           +L    EA+ +  A++I   +    G  P+  +YNI++   S+    KS  A  L+ MM 
Sbjct: 118 LLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYNILLK--SLCNQGKSGQADNLLRMMA 175

Query: 572 RDGFY--PQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
             G    P  + Y  +I      GD ++A +L   +   GIP D++ YN+++   C+   
Sbjct: 176 EGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARA 235

Query: 630 IDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLE 688
           +D  E  + QM   +V P+  T + +  GY + G    A+   + +    +  +V TL 
Sbjct: 236 MDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLS 294



 Score = 48.9 bits (115), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 67/316 (21%), Positives = 116/316 (36%), Gaps = 69/316 (21%)

Query: 381 LAEALLDQI-SRCTNPK-------PFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTY 432
           LA AL ++  SR   P+        ++  +  C    +PE A+  F    Q LR  +R  
Sbjct: 55  LAVALFNRAASRAQGPRVLSPTSYTYAILMDCCTRAHRPELALAFFG---QLLRTGLRVD 111

Query: 433 ELLFSLFGNVNAPYEEGNMFSQVDSAKRIN-AIEMDMARN---NIQHSHISMKNLLKAL- 487
            ++ S            ++      AKR + A+++ + R           S   LLK+L 
Sbjct: 112 AIIAS------------HLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYNILLKSLC 159

Query: 488 --GAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPP 542
             G  G    L++   +  T + +P    YNTV+    +  + ++A ++FK+M   GIPP
Sbjct: 160 NQGKSGQADNLLRMMAEGGT-VCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPP 218

Query: 543 NAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL 602
           +  TYN ++      R    A A +  MV     P   TY  LI      G + EA+   
Sbjct: 219 DLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVR-- 276

Query: 603 DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNC 662
                                            + ++M ++ + PD  T   +       
Sbjct: 277 ---------------------------------VFKEMRRHSILPDVVTLSMLMGSLCKY 303

Query: 663 GFHNSAMEALQVLSMR 678
           G    A +    ++M+
Sbjct: 304 GKIKEARDVFDTMAMK 319


>gi|242067062|ref|XP_002454820.1| hypothetical protein SORBIDRAFT_04g038070 [Sorghum bicolor]
 gi|241934651|gb|EES07796.1| hypothetical protein SORBIDRAFT_04g038070 [Sorghum bicolor]
          Length = 600

 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 110/263 (41%), Gaps = 17/263 (6%)

Query: 410 KPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
           +P  A+++F +MR + L PD      L +             +F +             M
Sbjct: 129 RPHDALRVFDQMRARGLAPDAHACTALLTALARARMTATARRVFDE-------------M 175

Query: 469 ARNNI---QHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQES 525
           AR  +    H + +M ++    G       L+     +  PL   +YNTV+    +    
Sbjct: 176 ARAGLAVSTHVYNAMLHVCLKAGDAARAEALVTRMDAAGVPLDRFSYNTVIALYCKKGMR 235

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
           + AM +  +M   GI  +  T+N +I         K A+ L + M      P  +TYT L
Sbjct: 236 YEAMCVRDRMDKEGIRADTVTWNSLIHGLCKYGRVKEAAQLFTEMAAAQATPDNVTYTTL 295

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           I      G+ +EA+ L   +   G+   V  YN IL+K CE G++  +  ++ +M + KV
Sbjct: 296 IDGYCRAGNIEEAVKLRGEMEATGMLPGVATYNAILRKLCEDGKMKEVNQLLNEMDERKV 355

Query: 646 QPDPSTCHFVFSGYVNCGFHNSA 668
           Q D  TC+ + + Y   G   SA
Sbjct: 356 QADHVTCNTLINAYCKRGHMTSA 378



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 78/378 (20%), Positives = 158/378 (41%), Gaps = 30/378 (7%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLR-NGMEVLKIM 354
           ++ ++H C +  ++  AE L+ +M + G+     +Y+  I A+   +G+R   M V   M
Sbjct: 187 YNAMLHVCLKAGDAARAEALVTRMDAAGVPLDRFSYNTVI-ALYCKKGMRYEAMCVRDRM 245

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKP--- 411
            +  ++    T  +L     K   +  A  L  +++          +    D   +    
Sbjct: 246 DKEGIRADTVTWNSLIHGLCKYGRVKEAAQLFTEMAAAQATPDNVTYTTLIDGYCRAGNI 305

Query: 412 ERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           E A+K+  +M    + P + TY  +           E+G M       K +N +  +M  
Sbjct: 306 EEAVKLRGEMEATGMLPGVATYNAILRKL------CEDGKM-------KEVNQLLNEMDE 352

Query: 471 NNIQHSHISMKNLLKALGAEGMIR---ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHR 527
             +Q  H++   L+ A    G +    ++ +   +S   L   TY  ++H   +A+E   
Sbjct: 353 RKVQADHVTCNTLINAYCKRGHMTSACKVKKKMMESGLQLNQFTYKALIHGFCKAKELDE 412

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSM----MVRDGFYPQTMTYT 583
           A E F QM   G  PN + ++ ++D      C K+ +  V +    +++ G  P    Y 
Sbjct: 413 AKEAFFQMVDAGFSPNYSVFSWLVDGF----CKKNNADAVLLIPDELMKRGLPPDKAVYR 468

Query: 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
           +LI+ L   G  D+A  + D +  +G+  D L+Y T+      +G+       ++ M +N
Sbjct: 469 SLIRRLCRKGLVDQAQKVFDQMQSKGLVGDSLVYATLAYTYLTEGKPVAASNTLDGMAKN 528

Query: 644 KVQPDPSTCHFVFSGYVN 661
           ++   P   + + + Y +
Sbjct: 529 QLYITPQIYNCLCTSYAD 546



 Score = 57.0 bits (136), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 72/164 (43%)

Query: 509 TPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVS 568
           T T+N+++H L +      A ++F +M      P+  TY  +ID        + A  L  
Sbjct: 254 TVTWNSLIHGLCKYGRVKEAAQLFTEMAAAQATPDNVTYTTLIDGYCRAGNIEEAVKLRG 313

Query: 569 MMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
            M   G  P   TY A+++ L + G   E   LL+ +    +  D +  NT++   C++G
Sbjct: 314 EMEATGMLPGVATYNAILRKLCEDGKMKEVNQLLNEMDERKVQADHVTCNTLINAYCKRG 373

Query: 629 RIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEAL 672
            +     + ++M ++ +Q +  T   +  G+      + A EA 
Sbjct: 374 HMTSACKVKKKMMESGLQLNQFTYKALIHGFCKAKELDEAKEAF 417



 Score = 44.7 bits (104), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 92/219 (42%), Gaps = 12/219 (5%)

Query: 121 NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLC 180
           +N  Y  ++   C+ G +EEA  L   + E  G+ P +  YN+ L    +   M   N  
Sbjct: 288 DNVTYTTLIDGYCRAGNIEEAVKLRGEM-EATGMLPGVATYNAILRKLCEDGKMKEVNQL 346

Query: 181 LDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH-YSLSIFSLRKFVWSFTR 239
           L+ MD R V  + VT   L+     + ++++  ++ +  ++    L+ F+ +  +  F +
Sbjct: 347 LNEMDERKVQADHVTCNTLINAYCKRGHMTSACKVKKKMMESGLQLNQFTYKALIHGFCK 406

Query: 240 LRDLKSAYETLQHMVALAMMGKLYI-NRTSEGRLRSSRLD----IPIPL--NALPVMKVL 292
            ++L  A E    MV         + +   +G  + +  D    IP  L    LP  K +
Sbjct: 407 AKELDEAKEAFFQMVDAGFSPNYSVFSWLVDGFCKKNNADAVLLIPDELMKRGLPPDKAV 466

Query: 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTY 331
              +  +I    R      A+++  QMQS GL   S  Y
Sbjct: 467 ---YRSLIRRLCRKGLVDQAQKVFDQMQSKGLVGDSLVY 502


>gi|255572426|ref|XP_002527150.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533489|gb|EEF35232.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 874

 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 87/384 (22%), Positives = 156/384 (40%), Gaps = 20/384 (5%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           ++ ++ +C R     L   L   M    + P ++T++  I  +     L +  E+   M 
Sbjct: 115 YNVLLKSCIRENRVELVSWLYKDMVLARVSPEAYTFNLLIGLLCDSGHLEDARELFDKMP 174

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKPE 412
               +P + T   L     +A        LL Q+       N   ++  +++     K  
Sbjct: 175 ARGCEPNEFTFGILVRGYCRAGLASKGLELLGQMRTMGILPNNVLYNTLISSFCKEGKTH 234

Query: 413 RAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFS--QVDSAKRINAIEMDMA 469
            A K+  KMR+  L P + T+    S         E   +F   Q+D        E+ + 
Sbjct: 235 DAEKLVDKMREDGLVPHVETFNSRISALCGSGKILEASRIFRDMQIDE-------ELGLP 287

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESH 526
             N+    I+ K +L     EGM+ E   L+     +   +   +YN  L  L+   +  
Sbjct: 288 HPNV----ITYKLMLMGFCKEGMLEEAKTLVDTMKRNANFINLESYNIWLLGLIRNGKLL 343

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
            A  + K+M   GI P+  +YNI++D          A  L+ +M+R+G  P T+TY+ L+
Sbjct: 344 EAWIVLKEMLGIGIEPDIYSYNIVMDGLCKNGMLSDARMLMGLMIRNGILPDTVTYSTLL 403

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
                 G   EA NLL  +       +    N +L    ++GRI   E ++++M++    
Sbjct: 404 HGYCSKGKVFEANNLLHEMISNNCSPNTYTCNVLLHSLWKEGRISEAENLLQKMNEKGYG 463

Query: 647 PDPSTCHFVFSGYVNCGFHNSAME 670
            D  TC+ + +   N G  + A+E
Sbjct: 464 VDTVTCNIIINALCNNGQLDKAIE 487



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 84/371 (22%), Positives = 156/371 (42%), Gaps = 29/371 (7%)

Query: 304 GRTQNSGLAEQLML--QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKP 361
           G  +N  L E  ++  +M  +G++P  ++Y+  +  +  +  L +   ++ +M +N + P
Sbjct: 335 GLIRNGKLLEAWIVLKEMLGIGIEPDIYSYNIVMDGLCKNGMLSDARMLMGLMIRNGILP 394

Query: 362 QDSTIATL-SVECSKALELDLAEALLDQISRCTNPKPFS--AFLAACDTMDKPERAIKIF 418
              T +TL    CSK    +    L + IS   +P  ++    L +     +   A  + 
Sbjct: 395 DTVTYSTLLHGYCSKGKVFEANNLLHEMISNNCSPNTYTCNVLLHSLWKEGRISEAENLL 454

Query: 419 AKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSH 477
            KM +K    D  T  ++      +NA    G    Q+D A       +++      H  
Sbjct: 455 QKMNEKGYGVDTVTCNII------INALCNNG----QLDKA-------IEIVNGMWTHGS 497

Query: 478 ISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKT 537
            ++ NL  +    G++ + I      K      TY+T++  L +A     A + F +M +
Sbjct: 498 AALGNLGNSF--IGLVDDTIS---GKKCTPDLVTYSTIISGLCKAGRLDDAKKKFIEMMS 552

Query: 538 CGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDE 597
            G+ P++A Y+  I          SA  ++  M + G      TY +LI  L       E
Sbjct: 553 KGLQPDSAIYDTFIHSFCREGKISSAFQVLKDMEKRGCNKTLQTYNSLILGLGSKNQIFE 612

Query: 598 ALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFS 657
              L+D +  +G+  DV  YN +L   CE GRI+    ++++M Q  + P+ S+   +  
Sbjct: 613 LYGLIDEMREKGVSPDVCTYNHMLNCLCEGGRINDAPSVLDEMLQKGISPNISSFRILIK 672

Query: 658 GYVN-CGFHNS 667
            +   C F  S
Sbjct: 673 AFCKACDFKAS 683



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 118/601 (19%), Positives = 243/601 (40%), Gaps = 62/601 (10%)

Query: 121 NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGA-CAKLHSMVHANL 179
           NN  Y  ++ + CK G   +A  L+  + E  G+ P +  +NS + A C     +  + +
Sbjct: 216 NNVLYNTLISSFCKEGKTHDAEKLVDKMRED-GLVPHVETFNSRISALCGSGKILEASRI 274

Query: 180 CLDLMDSRMVG---KNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKF-VW 235
             D+     +G    N +TY +L+ +   ++ +    +   D +K  + +  +L  + +W
Sbjct: 275 FRDMQIDEELGLPHPNVITY-KLMLMGFCKEGMLEEAKTLVDTMKRNA-NFINLESYNIW 332

Query: 236 SFTRLRDLK--SAYETLQHMVALAMMGKLY-INRTSEGRLRSSRLDIPIPLNALPVMKVL 292
               +R+ K   A+  L+ M+ + +   +Y  N   +G  ++  L     L  L +   +
Sbjct: 333 LLGLIRNGKLLEAWIVLKEMLGIGIEPDIYSYNIVMDGLCKNGMLSDARMLMGLMIRNGI 392

Query: 293 ---RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGME 349
                ++S ++H          A  L+ +M S    P+++T +  + ++  +  +     
Sbjct: 393 LPDTVTYSTLLHGYCSKGKVFEANNLLHEMISNNCSPNTYTCNVLLHSLWKEGRISEAEN 452

Query: 350 VLKIMQQNNLKPQDSTIATL------SVECSKALEL-------------DLAEALL---- 386
           +L+ M +        T   +      + +  KA+E+             +L  + +    
Sbjct: 453 LLQKMNEKGYGVDTVTCNIIINALCNNGQLDKAIEIVNGMWTHGSAALGNLGNSFIGLVD 512

Query: 387 DQIS--RCT-NPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNV 442
           D IS  +CT +   +S  ++      + + A K F +M  K L+PD   Y+     F   
Sbjct: 513 DTISGKKCTPDLVTYSTIISGLCKAGRLDDAKKKFIEMMSKGLQPDSAIYDTFIHSF--- 569

Query: 443 NAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCD 502
                EG + S     K       DM +     +  +  +L+  LG++  I EL     +
Sbjct: 570 ---CREGKISSAFQVLK-------DMEKRGCNKTLQTYNSLILGLGSKNQIFELYGLIDE 619

Query: 503 SKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRC 559
            +    +P   TYN +L+ L E    + A  +  +M   GI PN +++ I+I        
Sbjct: 620 MREKGVSPDVCTYNHMLNCLCEGGRINDAPSVLDEMLQKGISPNISSFRILIKAFCKACD 679

Query: 560 FKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNT 619
           FK++  +  + +    + + + YT +   LL  G   EA  L +            LY  
Sbjct: 680 FKASHEVFEIALNVCGHKEAL-YTLMFNELLVGGKVAEAKELFETALDRSFDIGNFLYKD 738

Query: 620 ILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRM 679
           ++ + C+  +++    ++ ++     Q DP++   V  G+   G  + A E    L+ RM
Sbjct: 739 LIDRLCKDEKLEAASDVLHRLIDKGYQFDPASFMPVIDGFGKMGNKHVADE----LAERM 794

Query: 680 L 680
           +
Sbjct: 795 M 795



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 61/294 (20%), Positives = 108/294 (36%), Gaps = 41/294 (13%)

Query: 421 MRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISM 480
           +R  + PD  TY  L   + +    +E  N+  +             M  NN   +  + 
Sbjct: 388 IRNGILPDTVTYSTLLHGYCSKGKVFEANNLLHE-------------MISNNCSPNTYTC 434

Query: 481 KNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKT 537
             LL +L  EG I E   L+Q   +    + T T N ++++L    +  +A+EI   M T
Sbjct: 435 NVLLHSLWKEGRISEAENLLQKMNEKGYGVDTVTCNIIINALCNNGQLDKAIEIVNGMWT 494

Query: 538 CG-----------------------IPPNAATYNIMID-CCSIIRCFKSASALVSMMVRD 573
            G                         P+  TY+ +I   C   R   +    + MM + 
Sbjct: 495 HGSAALGNLGNSFIGLVDDTISGKKCTPDLVTYSTIISGLCKAGRLDDAKKKFIEMMSK- 553

Query: 574 GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVI 633
           G  P +  Y   I      G    A  +L  +   G    +  YN+++     K +I  +
Sbjct: 554 GLQPDSAIYDTFIHSFCREGKISSAFQVLKDMEKRGCNKTLQTYNSLILGLGSKNQIFEL 613

Query: 634 EFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTL 687
             +I++M +  V PD  T + + +     G  N A   L  +  + +   +S+ 
Sbjct: 614 YGLIDEMREKGVSPDVCTYNHMLNCLCEGGRINDAPSVLDEMLQKGISPNISSF 667


>gi|115449175|ref|NP_001048367.1| Os02g0793200 [Oryza sativa Japonica Group]
 gi|113537898|dbj|BAF10281.1| Os02g0793200 [Oryza sativa Japonica Group]
 gi|215704904|dbj|BAG94932.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 473

 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 104/488 (21%), Positives = 184/488 (37%), Gaps = 86/488 (17%)

Query: 305 RTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDS 364
           R  +   AE +++    LGL P   TY+  + A     GL  G+ V+  M++  ++P   
Sbjct: 35  RGGSLAAAESVLVDAIRLGLPPDVVTYNTLLAAHCRAAGLEAGLVVMGRMREAGVEPDAV 94

Query: 365 TIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKM-RQ 423
           T                                +++ +A       P  A+ +F +M R 
Sbjct: 95  T--------------------------------YNSLIAGAARRGLPIHALDLFDEMLRS 122

Query: 424 KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNL 483
            + PD  +Y  L         P +   +F+             DMA   I     +   L
Sbjct: 123 GIAPDSWSYNPLMHCLFRSGHPEDAYRVFA-------------DMAEKGIAPCDTTYNTL 169

Query: 484 LKALGAEGMIR--------ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQM 535
           L     +GM R         + +Y   +  P+   TYNT+++ L  + +   A  + +++
Sbjct: 170 L-----DGMFRAGYAMNAYRMFRYLQRAGLPVSIVTYNTMINGLCSSGKVGYARMVLREL 224

Query: 536 KTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDF 595
                 PN  TY  ++ CC     F+        ++  G+      Y  +I  L+  G  
Sbjct: 225 GRTDHAPNIITYTAVMKCCFKYGRFEQGLDTFLSLLDRGYISDVYPYCTVISALVKKGRL 284

Query: 596 DEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFV 655
            EA N  DL+   G   D + YNT++   C++G++D    ++  M    ++ D  T   +
Sbjct: 285 GEANNYCDLMLQNGSRLDSVCYNTLIHMRCQEGKLDDAFELVSMMEDGGLESDEYTFAIL 344

Query: 656 FSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDFEDLILA----EDSEAESRILQ 711
            +G    G H  A E  Q+  M     E+  ++     +  L+ A    ++ +A  R+LQ
Sbjct: 345 VNGLCKMG-HIEAAEK-QLFYM-----EIKGMQSNVVAYNCLVDALCKFQEVDAAIRLLQ 397

Query: 712 FCEDSNENLAFTA-------------ALLQLRWCTIVGFPISWSLDRA--SGLEDSQTNS 756
            C    ++  +T+             A   LR C   G  +  S  RA  +GL  S   +
Sbjct: 398 -CMKLKDDFTYTSLVHGLCRVGRYHMASKFLRICLHEGNNVLASAKRAVIAGLRSSGFKN 456

Query: 757 NSRKQEIA 764
           + RK  +A
Sbjct: 457 DLRKVRVA 464



 Score = 46.6 bits (109), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 72/397 (18%), Positives = 148/397 (37%), Gaps = 65/397 (16%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           WS++ ++H   R+ +   A ++   M   G+ P   TY+  +  +       N   + + 
Sbjct: 129 WSYNPLMHCLFRSGHPEDAYRVFADMAEKGIAPCDTTYNTLLDGMFRAGYAMNAYRMFRY 188

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMD 409
           +Q+  L     T  T+      + ++  A  +L ++ R T+  P    ++A +  C    
Sbjct: 189 LQRAGLPVSIVTYNTMINGLCSSGKVGYARMVLRELGR-TDHAPNIITYTAVMKCCFKYG 247

Query: 410 KPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
           + E+ +  F  +  +               G ++  Y    + S +    R+        
Sbjct: 248 RFEQGLDTFLSLLDR---------------GYISDVYPYCTVISALVKKGRLGEA----- 287

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCD----SKTPLGTPTYNTVLHSLVEAQES 525
            NN                           +CD    + + L +  YNT++H   +  + 
Sbjct: 288 -NN---------------------------YCDLMLQNGSRLDSVCYNTLIHMRCQEGKL 319

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
             A E+   M+  G+  +  T+ I+++    +   ++A   +  M   G     + Y  L
Sbjct: 320 DDAFELVSMMEDGGLESDEYTFAILVNGLCKMGHIEAAEKQLFYMEIKGMQSNVVAYNCL 379

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVI-EFIIEQMHQ-N 643
           +  L  + + D A+ LL  + L+    D   Y +++   C  GR  +  +F+   +H+ N
Sbjct: 380 VDALCKFQEVDAAIRLLQCMKLK----DDFTYTSLVHGLCRVGRYHMASKFLRICLHEGN 435

Query: 644 KVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRML 680
            V    S    V +G  + GF N   +    L+M  L
Sbjct: 436 NVL--ASAKRAVIAGLRSSGFKNDLRKVRVALNMAKL 470



 Score = 45.1 bits (105), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 37/169 (21%), Positives = 63/169 (37%)

Query: 507 LGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASAL 566
           L T   N  L +L        A  +       G+PP+  TYN ++         ++   +
Sbjct: 21  LPTRLLNVCLAALCRGGSLAAAESVLVDAIRLGLPPDVVTYNTLLAAHCRAAGLEAGLVV 80

Query: 567 VSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE 626
           +  M   G  P  +TY +LI      G    AL+L D +   GI  D   YN ++     
Sbjct: 81  MGRMREAGVEPDAVTYNSLIAGAARRGLPIHALDLFDEMLRSGIAPDSWSYNPLMHCLFR 140

Query: 627 KGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
            G  +    +   M +  + P  +T + +  G    G+  +A    + L
Sbjct: 141 SGHPEDAYRVFADMAEKGIAPCDTTYNTLLDGMFRAGYAMNAYRMFRYL 189


>gi|296084128|emb|CBI24516.3| unnamed protein product [Vitis vinifera]
          Length = 970

 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 78/380 (20%), Positives = 159/380 (41%), Gaps = 9/380 (2%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           ++ +IH   R +    A ++ L+M  +G  P ++TY+  I   V       G  +   M 
Sbjct: 152 YTSLIHGYCRGKKMRTAMRVFLRMLKMGCDPDTYTYNTLIHGFVKLGLFDKGWILHNQMS 211

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAI 415
           +  L+P   T   +     +  ++D A  LL  +S         ++      + K  R +
Sbjct: 212 EWGLQPNVVTYHIMIRRYCEEGKVDCALTLLSSMSSFNLTPSVHSYTVLITALYKENRLV 271

Query: 416 KIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQH 475
           ++    ++ L   +    +LF           E ++  ++  A   N   +D+   +   
Sbjct: 272 EVEELYKKMLDIGVVPDHVLFFTLMQKQPKGHELHLALKILQAIAKNGCNLDLCLLSTSA 331

Query: 476 SHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQM 535
           +H   +++ + +  E ++ E+++        L    +   + +L  A ++  A+    +M
Sbjct: 332 THSPTQDVEQEI--ECLLGEIVR----RNFALADVAFGIFISALCAAGKTDAALLFMDKM 385

Query: 536 KTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDF 595
            + G  P  +TYN +I C    R  + A +L+ +M  +G  P   TY  ++    ++GD 
Sbjct: 386 VSLGCRPLLSTYNSLIKCLFQERLVEDAKSLIDLMQENGIVPDLATYLIMVHEHCNHGDL 445

Query: 596 DEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFV 655
             A  LLD ++  G+   V +Y++I+     + RI   E + + M +  V PD      +
Sbjct: 446 ASAFGLLDQMNERGLKPSVAIYDSIIGCLSRRKRILEAENVFKMMLEAGVDPDAIIYVTM 505

Query: 656 FSGYVNCGFHNSAMEALQVL 675
            SGY     +  A+EA Q+ 
Sbjct: 506 ISGYSK---NRRAIEARQLF 522



 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 130/587 (22%), Positives = 216/587 (36%), Gaps = 113/587 (19%)

Query: 128 MMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSR 187
           ++  LC  G+++EA  +   + ER G+   + +Y +      +   +  A L +  M+S 
Sbjct: 84  LIDGLCDKGHVDEAFYMFDTMRERTGLPATIHLYKTLFYGLCRQERVEEAELFVGEMESE 143

Query: 188 MVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSA- 246
               +++ YT L+      K +     ++                       LR LK   
Sbjct: 144 GHFIDKMMYTSLIHGYCRGKKMRTAMRVF-----------------------LRMLKMGC 180

Query: 247 ------YETLQH-MVALAMMGKLYI--NRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFS 297
                 Y TL H  V L +  K +I  N+ SE  L+          N +    ++R    
Sbjct: 181 DPDTYTYNTLIHGFVKLGLFDKGWILHNQMSEWGLQP---------NVVTYHIMIRRYCE 231

Query: 298 DVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQN 357
           +    C  T        L+  M S  L PS H+Y   I A+  +  L    E+ K M   
Sbjct: 232 EGKVDCALT--------LLSSMSSFNLTPSVHSYTVLITALYKENRLVEVEELYKKMLDI 283

Query: 358 NLKPQDSTIATLSVECSKALELDLA----------------------------------- 382
            + P      TL  +  K  EL LA                                   
Sbjct: 284 GVVPDHVLFFTLMQKQPKGHELHLALKILQAIAKNGCNLDLCLLSTSATHSPTQDVEQEI 343

Query: 383 EALLDQISR---CTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSL 438
           E LL +I R         F  F++A     K + A+    KM     RP + TY  L   
Sbjct: 344 ECLLGEIVRRNFALADVAFGIFISALCAAGKTDAALLFMDKMVSLGCRPLLSTYNSL--- 400

Query: 439 FGNVNAPYEEGNMFSQVDSAKRI------NAIEMDMARNNIQ-HSHISMKNLLKALGAEG 491
              +   ++E      V+ AK +      N I  D+A   I  H H +  +L  A G   
Sbjct: 401 ---IKCLFQE----RLVEDAKSLIDLMQENGIVPDLATYLIMVHEHCNHGDLASAFG--- 450

Query: 492 MIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI 551
               L+    +         Y++++  L   +    A  +FK M   G+ P+A  Y  MI
Sbjct: 451 ----LLDQMNERGLKPSVAIYDSIIGCLSRRKRILEAENVFKMMLEAGVDPDAIIYVTMI 506

Query: 552 DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIP 611
              S  R    A  L   M+  GF P + +YTA+I  L+     D+  + L  +  +G  
Sbjct: 507 SGYSKNRRAIEARQLFDKMIEHGFQPSSHSYTAVISGLVKENMIDKGCSYLSDMLKDGFV 566

Query: 612 HDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
            + +LY +++ +   KG ++    +++ M +N+++ D  TC  + SG
Sbjct: 567 PNTVLYTSLINQFLRKGELEFAFRLVDLMDRNQIECDMITCIALVSG 613



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 114/532 (21%), Positives = 189/532 (35%), Gaps = 105/532 (19%)

Query: 116 KEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGE--RYGIYPILPVYNSFLGACAKLHS 173
           +   L +  + + + ALC  G  + A   + F+ +    G  P+L  YNS +    +   
Sbjct: 353 RNFALADVAFGIFISALCAAGKTDAA---LLFMDKMVSLGCRPLLSTYNSLIKCLFQERL 409

Query: 174 MVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKF 233
           +  A   +DLM    +  +  TY            L  VHE    +  H           
Sbjct: 410 VEDAKSLIDLMQENGIVPDLATY------------LIMVHE----HCNH----------- 442

Query: 234 VWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRL-RSSRLDIPIPLNALPVMKVL 292
                   DL SA+  L  M    +   + I  +  G L R  R+     L A  V K++
Sbjct: 443 -------GDLASAFGLLDQMNERGLKPSVAIYDSIIGCLSRRKRI-----LEAENVFKMM 490

Query: 293 RWSFSD--------VIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGL 344
             +  D        +I    + + +  A QL  +M   G QPSSH+Y   I  +V +  +
Sbjct: 491 LEAGVDPDAIIYVTMISGYSKNRRAIEARQLFDKMIEHGFQPSSHSYTAVISGLVKENMI 550

Query: 345 RNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAA 404
             G   L  M ++   P      +L  +  +  EL+ A  L+D + R             
Sbjct: 551 DKGCSYLSDMLKDGFVPNTVLYTSLINQFLRKGELEFAFRLVDLMDRNQ---------IE 601

Query: 405 CDTMDKPERAIKIFAKMRQKLRP-----------DIRTYELLFSLFGNVNAPYEEGNMFS 453
           CD +      I + + + + + P             R  E+L  L         E N+  
Sbjct: 602 CDMIT----CIALVSGVSRNITPVRRRWYHVKSGSARVREILLHLLHQSFVIPRENNLSF 657

Query: 454 QVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYN 513
              S ++I    +               NL++ +     +  L               YN
Sbjct: 658 PRGSPRKIKYFAL---------------NLMQKIKGSSFMPNLY-------------LYN 689

Query: 514 TVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRD 573
            ++     A     A   F+ M+T G+ PN  T+ I+I+  +       A  L + M  D
Sbjct: 690 GIISGFCRANMIQDAYNHFELMQTEGVCPNQVTFTILINGHTRFGEIDHAIGLFNKMNAD 749

Query: 574 GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKAC 625
           G  P  +TY ALIK L   G   +AL++   +   G+  +   Y  +LK  C
Sbjct: 750 GLAPDGITYNALIKGLCKAGRLLDALSVSHTMHKRGLFPNKSSYEKLLKCLC 801



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 77/359 (21%), Positives = 138/359 (38%), Gaps = 33/359 (9%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A  L+ QM   GL+PS   YD  I  +   + +     V K+M +  + P      T+  
Sbjct: 448 AFGLLDQMNERGLKPSVAIYDSIIGCLSRRKRILEAENVFKMMLEAGVDPDAIIYVTMIS 507

Query: 372 ECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRT 431
             SK      A  L D++          ++ A    + K     K  + +   L+     
Sbjct: 508 GYSKNRRAIEARQLFDKMIEHGFQPSSHSYTAVISGLVKENMIDKGCSYLSDMLKDGFVP 567

Query: 432 YELLFSLFGNVNAPYEEGNM---FSQVDSAKRINAIEMDMARNNIQHSHISM------KN 482
             +L++    +N    +G +   F  VD   R N IE DM       S +S       + 
Sbjct: 568 NTVLYTSL--INQFLRKGELEFAFRLVDLMDR-NQIECDMITCIALVSGVSRNITPVRRR 624

Query: 483 LLKALGAEGMIRELI-----QYFCDSKT-----PLGTPTYNTVLHSLVEAQESHRAMEIF 532
                     +RE++     Q F   +      P G+P            +  + A+ + 
Sbjct: 625 WYHVKSGSARVREILLHLLHQSFVIPRENNLSFPRGSPR-----------KIKYFALNLM 673

Query: 533 KQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDY 592
           +++K     PN   YN +I         + A     +M  +G  P  +T+T LI     +
Sbjct: 674 QKIKGSSFMPNLYLYNGIISGFCRANMIQDAYNHFELMQTEGVCPNQVTFTILINGHTRF 733

Query: 593 GDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
           G+ D A+ L + ++ +G+  D + YN ++K  C+ GR+     +   MH+  + P+ S+
Sbjct: 734 GEIDHAIGLFNKMNADGLAPDGITYNALIKGLCKAGRLLDALSVSHTMHKRGLFPNKSS 792


>gi|115473111|ref|NP_001060154.1| Os07g0590600 [Oryza sativa Japonica Group]
 gi|34393454|dbj|BAC82993.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113611690|dbj|BAF22068.1| Os07g0590600 [Oryza sativa Japonica Group]
          Length = 784

 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 78/344 (22%), Positives = 144/344 (41%), Gaps = 26/344 (7%)

Query: 314 QLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVEC 373
           +L+  M+  G+ P  +TY+  I         +   +V   M+ +  +P   T  +L    
Sbjct: 229 ELVASMKEHGVAPDRYTYNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVY 288

Query: 374 SKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKP---ERAIKIFAKMRQK-LRPDI 429
            KA   D A  ++ ++ R   P     + +   +  K    E+A+ +  +M  K ++PD+
Sbjct: 289 GKARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGMKPDV 348

Query: 430 RTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINA--IEMD-MARNNIQHSHISMKNLLKA 486
            TY  L S                 +D A +I+A  +E D M RN  + +  +   L+K 
Sbjct: 349 VTYTTLIS----------------GLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKM 392

Query: 487 LGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPN 543
            G  G   E++  F + ++    P   T+NT+L    +         +FK+MK  G  P 
Sbjct: 393 HGVRGKFPEMMAVFDEFRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPE 452

Query: 544 AATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLD 603
             TY  +I   S    F  A  +   M+  G YP   TY A++  L   G +++A  L  
Sbjct: 453 RDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFA 512

Query: 604 LVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
            +       D   Y+++L       R+D ++ + + ++  +++P
Sbjct: 513 EMEERDCKPDEYSYSSLLHAYANAKRLDKMKALSDDIYSERIEP 556



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 80/365 (21%), Positives = 146/365 (40%), Gaps = 60/365 (16%)

Query: 365 TIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDKPERAIKIFAK 420
            +AT     ++A  L  A ALLD       P P    ++A ++A     +   A+ +F +
Sbjct: 143 VLATAIRVMARAGRLAEASALLD-----AAPGPDAGAYTALVSAFSRAGRFRDAVAVFRR 197

Query: 421 M-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHIS 479
           M    ++P I TY ++  ++  +  P++E            +  +   M  + +     +
Sbjct: 198 MVDSGVQPAIVTYNVVLHVYSKMAVPWKE------------VVELVASMKEHGVAPDRYT 245

Query: 480 MKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMK 536
              L+       + +E  Q F + K     P   T+N++L    +A+    A+E+ ++M+
Sbjct: 246 YNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEME 305

Query: 537 TCGIPPNAATYNIMIDC---------------------------------CSIIRCFKSA 563
             G PP+  TYN +I                                     + R  K  
Sbjct: 306 RVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGMKPDVVTYTTLISGLDRAGKID 365

Query: 564 SALVSM--MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTIL 621
           +A+V    MVR+G  P   TY ALIK+    G F E + + D     G   D++ +NT+L
Sbjct: 366 AAIVEYDEMVRNGCKPNLCTYNALIKMHGVRGKFPEMMAVFDEFRSAGFVPDIVTWNTLL 425

Query: 622 KKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLC 681
               + G    +  + ++M +    P+  T   + S Y  CG  + AM+  + +    + 
Sbjct: 426 AVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIY 485

Query: 682 EEVST 686
            +VST
Sbjct: 486 PDVST 490



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 112/542 (20%), Positives = 215/542 (39%), Gaps = 64/542 (11%)

Query: 150 ERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKL-AVWQKN 208
           + +G+ P    YN+ +  C +      A    D M +     ++VT+  LL +    +++
Sbjct: 235 KEHGVAPDRYTYNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKARRH 294

Query: 209 LSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRT- 267
             A+  I E        S+ +    + S+ +   L+ A    Q M    M   +    T 
Sbjct: 295 DEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGMKPDVVTYTTL 354

Query: 268 SEGRLRSSRLDIPI----------------PLNALPVMKVLRWSFSDVIHACGRTQNSGL 311
             G  R+ ++D  I                  NAL  M  +R  F +++           
Sbjct: 355 ISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGVRGKFPEMM----------- 403

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGME-VLKIMQQNNLKPQDSTIATLS 370
              +  + +S G  P   T++  + A+    GL + +  V K M++    P+  T  +L 
Sbjct: 404 --AVFDEFRSAGFVPDIVTWNTLL-AVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLI 460

Query: 371 VECSKALELDLAEALLDQISRC---TNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LR 426
              S+    DLA  +  ++       +   ++A L+A     + E+A K+FA+M ++  +
Sbjct: 461 SSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCK 520

Query: 427 PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI------------------NAIEMDM 468
           PD  +Y  L   + N     ++    S    ++RI                  N  E + 
Sbjct: 521 PDEYSYSSLLHAYANAKR-LDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEK 579

Query: 469 ARNNIQHSHISMK-NLLKAL----GAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLV 520
           A   ++    S+  N+L A+    G   M+R+   ++    +S   L   TYN+++H   
Sbjct: 580 AFLELRQKRCSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYS 639

Query: 521 EAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTM 580
              +  +   I  ++K+ G+ P+  +YN +I         K AS L S M   G  P  +
Sbjct: 640 RLGDCEKCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVV 699

Query: 581 TYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQM 640
           TY   +K  +    F+EA+ L+  +  +G   +   YN+I++  C  G++   +  +  +
Sbjct: 700 TYNIFVKSYVSNSMFEEAIELVRYMVTQGCKPNERTYNSIVEGYCRNGKLTDAKIFVSNL 759

Query: 641 HQ 642
            Q
Sbjct: 760 PQ 761



 Score = 60.5 bits (145), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 74/385 (19%), Positives = 144/385 (37%), Gaps = 66/385 (17%)

Query: 326 PSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTI-------ATLSVECSKALE 378
           P +  Y   + A       R+ + V + M  + ++P   T        + ++V   + +E
Sbjct: 170 PDAGAYTALVSAFSRAGRFRDAVAVFRRMVDSGVQPAIVTYNVVLHVYSKMAVPWKEVVE 229

Query: 379 LDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFS 437
           L    A + +     +   ++  ++ C      + A ++F +M+     PD  T+  L  
Sbjct: 230 L---VASMKEHGVAPDRYTYNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLD 286

Query: 438 LFGNVNAPYEEGNMFSQVDSAKRINAIEM--DMARNNIQHSHISMKNLLKALGAEGMIRE 495
           ++G                  +   AIE+  +M R     S ++  +L+ +   +G++ +
Sbjct: 287 VYGKAR---------------RHDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQ 331

Query: 496 LIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI- 551
            +    + +     P   TY T++  L  A +   A+  + +M   G  PN  TYN +I 
Sbjct: 332 AVALKQEMEVKGMKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIK 391

Query: 552 ---------DCCSIIRCFKSA-------------------------SALVSMMVRDGFYP 577
                    +  ++   F+SA                         S +   M + G+ P
Sbjct: 392 MHGVRGKFPEMMAVFDEFRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIP 451

Query: 578 QTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFII 637
           +  TY +LI      G FD A+ +   +   GI  DV  YN +L      GR +  E + 
Sbjct: 452 ERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLF 511

Query: 638 EQMHQNKVQPDPSTCHFVFSGYVNC 662
            +M +   +PD  +   +   Y N 
Sbjct: 512 AEMEERDCKPDEYSYSSLLHAYANA 536



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 66/284 (23%), Positives = 112/284 (39%), Gaps = 34/284 (11%)

Query: 105 FVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSF 164
             M+ ++ M E  I  +   Y  ++ AL +GG  E+A  L   + ER    P    Y+S 
Sbjct: 471 LAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEER-DCKPDEYSYSSL 529

Query: 165 LGACAKLHSMVHAN-LCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHY 223
           L A A    +     L  D+   R+   N +  T +L  +       A     E   K  
Sbjct: 530 LHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLELRQKRC 589

Query: 224 SLSIFSLRKFVWSFTRLRDLK------------------SAYETLQHMVALAMMGKLYIN 265
           SL I  L   V  + + R ++                  + Y +L HM +     +   N
Sbjct: 590 SLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGDCEKCEN 649

Query: 266 RTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQ 325
             +E +    R D              R+S++ VI+A GR      A +L  +M+  GL+
Sbjct: 650 ILTEIKSSGVRPD--------------RYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLK 695

Query: 326 PSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL 369
           P   TY+ F+++ VS+      +E+++ M     KP + T  ++
Sbjct: 696 PDVVTYNIFVKSYVSNSMFEEAIELVRYMVTQGCKPNERTYNSI 739


>gi|356557791|ref|XP_003547194.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Glycine max]
          Length = 793

 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 119/581 (20%), Positives = 222/581 (38%), Gaps = 88/581 (15%)

Query: 131 ALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVG 190
            L KGG LE+A   +  + +  GI P +  YNS +     L+ +  A   +  + S+   
Sbjct: 279 VLVKGGKLEKALKFLERM-QVTGIKPDIVTYNSLIKGYCDLNRIEDALELIAGLPSKGCP 337

Query: 191 KNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETL 250
            ++V+Y  ++     +K +  V  + E              K VW+   + D +  Y TL
Sbjct: 338 PDKVSYYTVMGFLCKEKKIEEVKCLME--------------KMVWNSNLIPD-QVTYNTL 382

Query: 251 QHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSG 310
            HM++        +    E + +   +D              +  +S ++H+  +     
Sbjct: 383 IHMLSKHGHADDALAFLKEAQDKGFHID--------------KVGYSAIVHSFCQKGRMD 428

Query: 311 LAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQD-STIATL 369
            A+ L++ M S G  P   TY   +        +    ++L+ M ++  KP   S  A L
Sbjct: 429 EAKSLVIDMYSRGCNPDVVTYTAIVDGFCRLGRIDEAKKILQQMYKHGCKPNTVSYTALL 488

Query: 370 SVECSKALELDLAEALLDQISRCTNPKP--FSAFLAACDTMDKPERAIKIFAKMRQKLRP 427
           +  C     L+  E +         P    + A +       K   A  +  +M +K   
Sbjct: 489 NGLCHSGKSLEAREMINVSEEHWWTPNAITYGAVMHGLRREGKLSEACDLTREMVEK--- 545

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL 487
                       G    P E             IN +   + +N             K +
Sbjct: 546 ------------GFFPTPVE-------------INLLIQSLCQNQ------------KVV 568

Query: 488 GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATY 547
            A+  + E +   C     +    + TV+H   +  +   A+ +   M   G  P+A TY
Sbjct: 569 EAKKYLEECLNKGC----AINVVNFTTVIHGFCQIGDMEAALSVLDDMYLSGKHPDAVTY 624

Query: 548 NIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSL 607
             + D          A+ L+  M+  G  P  +TY ++I     +G  D+ LNLL+ + L
Sbjct: 625 TALFDALGKKGRLDEAAELIVKMLSKGLDPTPVTYRSVIHRYSQWGRVDDMLNLLEKM-L 683

Query: 608 EGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNS 667
           +  P   + YN +++K C+ G ++  E ++ ++ +   + D +TCH +   Y+  G   S
Sbjct: 684 KRQPFRTV-YNQVIEKLCDFGNLEEAEKLLGKVLRTASKVDANTCHVLMESYLKKGVAIS 742

Query: 668 AMEALQVLSMR------MLCEEVS---TLEEKRSDFEDLIL 699
           A +    +  R       LCE+VS    L+ K  + ++L+L
Sbjct: 743 AYKVACRMFRRNLTPDLKLCEKVSKKLVLDGKLVEADNLML 783



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 94/401 (23%), Positives = 158/401 (39%), Gaps = 26/401 (6%)

Query: 312 AEQLMLQMQSLGLQP---SSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIAT 368
           A +L+  + S G  P   S +T  GF+        ++  ME  K++  +NL P   T  T
Sbjct: 324 ALELIAGLPSKGCPPDKVSYYTVMGFLCKEKKIEEVKCLME--KMVWNSNLIPDQVTYNT 381

Query: 369 LSVECSKALELDLAEALLDQISRC---TNPKPFSAFLAACDTMDKPERAIKIFAKMRQK- 424
           L    SK    D A A L +        +   +SA + +     + + A  +   M  + 
Sbjct: 382 LIHMLSKHGHADDALAFLKEAQDKGFHIDKVGYSAIVHSFCQKGRMDEAKSLVIDMYSRG 441

Query: 425 LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLL 484
             PD+ TY  +   F  +           ++D AK+I      M ++  + + +S   LL
Sbjct: 442 CNPDVVTYTAIVDGFCRL----------GRIDEAKKI---LQQMYKHGCKPNTVSYTALL 488

Query: 485 KALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIP 541
             L   G   E  +    S+    TP   TY  V+H L    +   A ++ ++M   G  
Sbjct: 489 NGLCHSGKSLEAREMINVSEEHWWTPNAITYGAVMHGLRREGKLSEACDLTREMVEKGFF 548

Query: 542 PNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNL 601
           P     N++I      +    A   +   +  G     + +T +I      GD + AL++
Sbjct: 549 PTPVEINLLIQSLCQNQKVVEAKKYLEECLNKGCAINVVNFTTVIHGFCQIGDMEAALSV 608

Query: 602 LDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVN 661
           LD + L G   D + Y  +     +KGR+D    +I +M    + P P T   V   Y  
Sbjct: 609 LDDMYLSGKHPDAVTYTALFDALGKKGRLDEAAELIVKMLSKGLDPTPVTYRSVIHRYSQ 668

Query: 662 CGFHNSAMEALQVLSMRMLCEEV-STLEEKRSDFEDLILAE 701
            G  +  +  L+ +  R     V + + EK  DF +L  AE
Sbjct: 669 WGRVDDMLNLLEKMLKRQPFRTVYNQVIEKLCDFGNLEEAE 709



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 69/369 (18%), Positives = 154/369 (41%), Gaps = 28/369 (7%)

Query: 291 VLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRG-LRNGME 349
           V+ ++  DV+    +T+    A +++  M   G++     + G++    S  G LRN + 
Sbjct: 201 VVYYTMLDVL---SKTKLCQGARRVLRLMTRRGIECPPEAF-GYVMVSYSRAGKLRNALR 256

Query: 350 VLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAAC 405
           VL +MQ+  ++P  S   T      K  +L+ A   L+++ + T  KP    +++ +   
Sbjct: 257 VLTLMQKAGVEPSLSICNTTIYVLVKGGKLEKALKFLERM-QVTGIKPDIVTYNSLIKGY 315

Query: 406 DTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAI 464
             +++ E A+++ A +  K   PD  +Y   +++ G             +    + +  +
Sbjct: 316 CDLNRIEDALELIAGLPSKGCPPDKVSY---YTVMG----------FLCKEKKIEEVKCL 362

Query: 465 EMDMARN-NIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTP---LGTPTYNTVLHSLV 520
              M  N N+    ++   L+  L   G   + + +  +++     +    Y+ ++HS  
Sbjct: 363 MEKMVWNSNLIPDQVTYNTLIHMLSKHGHADDALAFLKEAQDKGFHIDKVGYSAIVHSFC 422

Query: 521 EAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTM 580
           +      A  +   M + G  P+  TY  ++D    +     A  ++  M + G  P T+
Sbjct: 423 QKGRMDEAKSLVIDMYSRGCNPDVVTYTAIVDGFCRLGRIDEAKKILQQMYKHGCKPNTV 482

Query: 581 TYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQM 640
           +YTAL+  L   G   EA  ++++        + + Y  ++     +G++     +  +M
Sbjct: 483 SYTALLNGLCHSGKSLEAREMINVSEEHWWTPNAITYGAVMHGLRREGKLSEACDLTREM 542

Query: 641 HQNKVQPDP 649
            +    P P
Sbjct: 543 VEKGFFPTP 551



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 66/142 (46%), Gaps = 1/142 (0%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
            +  V+ S   A +   A+ +   M+  G+ P+ +  N  I         + A   +  M
Sbjct: 237 AFGYVMVSYSRAGKLRNALRVLTLMQKAGVEPSLSICNTTIYVLVKGGKLEKALKFLERM 296

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
              G  P  +TY +LIK   D    ++AL L+  +  +G P D + Y T++   C++ +I
Sbjct: 297 QVTGIKPDIVTYNSLIKGYCDLNRIEDALELIAGLPSKGCPPDKVSYYTVMGFLCKEKKI 356

Query: 631 DVIEFIIEQMHQN-KVQPDPST 651
           + ++ ++E+M  N  + PD  T
Sbjct: 357 EEVKCLMEKMVWNSNLIPDQVT 378


>gi|449525305|ref|XP_004169658.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29290-like [Cucumis sativus]
          Length = 600

 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 80/360 (22%), Positives = 145/360 (40%), Gaps = 54/360 (15%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           ++ +I  CG+  N   AE+    M+  G   +  TY   +   V        ++    M 
Sbjct: 258 YNTMISICGKDNNWVEAERTWRLMEKNGCGATRITYSLLVSTFVRCNQNELAIDTYVKMV 317

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQISRC---TNPKPFSAFLAACDTMDKPE 412
           QN+ KP + T+  +    SK  + D A  +   + +C    N   F+A + A     +  
Sbjct: 318 QNSFKPGNDTMQAIIGASSKEGKWDFALRVFQDMLKCGLQPNSVSFNALINALGKAKEVT 377

Query: 413 RAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471
            A  ++  M+     PD+ T+  L       N   +  ++F                   
Sbjct: 378 LAFSVYNVMKSMGHSPDVYTWNALLGALYKANRYSDAIHLF------------------- 418

Query: 472 NIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEI 531
                             E + RE +Q        L    YNT+L S  +     RA++I
Sbjct: 419 ------------------EFVKREKVQ--------LNIHIYNTILMSCSKLGLWERAVQI 452

Query: 532 FKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLD 591
             +M+  G+  + ++YNI++  C + R  + A  +   MV     P T T+ +LI+  + 
Sbjct: 453 LWEMEVSGLSISTSSYNIVMTACEMARKPEIALQVYERMVHQKLTPDTFTHLSLIRCCIW 512

Query: 592 YGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
              +DE   LL+    +  P DV +YN +++  C +G+ D+ + +  +M +N +QPD  T
Sbjct: 513 GSLWDEVELLLN----KSAP-DVSVYNVVIQGMCLRGKSDLAKKLYTKMRENGIQPDGKT 567



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 79/384 (20%), Positives = 152/384 (39%), Gaps = 49/384 (12%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL-- 369
           A +L+  MQ  GL PS H  +  +  ++ +    +G+ + + M+ N L    +    L  
Sbjct: 168 ALELLRSMQLAGLLPSLHALNSLLACLLRNELFADGLRIFEFMKLNELSTGHTYSLVLKA 227

Query: 370 ---------SVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAK 420
                    ++E  KA E     A  D I        ++  ++ C   +    A + +  
Sbjct: 228 VANAHGFLSALEMFKAWEHQCVLAQFDAIV-------YNTMISICGKDNNWVEAERTWRL 280

Query: 421 MRQKLRPDIR-TYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMD----MARNNIQH 475
           M +      R TY LL S F   N                  N + +D    M +N+ + 
Sbjct: 281 MEKNGCGATRITYSLLVSTFVRCNQ-----------------NELAIDTYVKMVQNSFKP 323

Query: 476 SHISMKNLLKALGAEGMIRELIQYFCDS-KTPL--GTPTYNTVLHSLVEAQESHRAMEIF 532
            + +M+ ++ A   EG     ++ F D  K  L   + ++N ++++L +A+E   A  ++
Sbjct: 324 GNDTMQAIIGASSKEGKWDFALRVFQDMLKCGLQPNSVSFNALINALGKAKEVTLAFSVY 383

Query: 533 KQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDY 592
             MK+ G  P+  T+N ++        +  A  L   + R+        Y  ++      
Sbjct: 384 NVMKSMGHSPDVYTWNALLGALYKANRYSDAIHLFEFVKREKVQLNIHIYNTILMSCSKL 443

Query: 593 GDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEF-IIEQMHQNKVQPDPST 651
           G ++ A+ +L  + + G+      YN ++  ACE  R   I   + E+M   K+ PD   
Sbjct: 444 GLWERAVQILWEMEVSGLSISTSSYNIVMT-ACEMARKPEIALQVYERMVHQKLTPDT-- 500

Query: 652 CHFVFSGYVNCGFHNSAMEALQVL 675
             F     + C    S  + +++L
Sbjct: 501 --FTHLSLIRCCIWGSLWDEVELL 522



 Score = 52.8 bits (125), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 58/283 (20%), Positives = 118/283 (41%), Gaps = 46/283 (16%)

Query: 160 VYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDY 219
           VYN+ +  C K ++ V A     LM+    G   +TY+ L+   V               
Sbjct: 257 VYNTMISICGKDNNWVEAERTWRLMEKNGCGATRITYSLLVSTFV--------------R 302

Query: 220 IKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEG------RLR 273
                L+I +  K V +       K   +T+Q ++  +         + EG      R+ 
Sbjct: 303 CNQNELAIDTYVKMVQN-----SFKPGNDTMQAIIGAS---------SKEGKWDFALRVF 348

Query: 274 SSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDG 333
              L   +  N++        SF+ +I+A G+ +   LA  +   M+S+G  P  +T++ 
Sbjct: 349 QDMLKCGLQPNSV--------SFNALINALGKAKEVTLAFSVYNVMKSMGHSPDVYTWNA 400

Query: 334 FIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI---S 390
            + A+       + + + + +++  ++       T+ + CSK    + A  +L ++    
Sbjct: 401 LLGALYKANRYSDAIHLFEFVKREKVQLNIHIYNTILMSCSKLGLWERAVQILWEMEVSG 460

Query: 391 RCTNPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTY 432
              +   ++  + AC+   KPE A++++ +M  QKL PD  T+
Sbjct: 461 LSISTSSYNIVMTACEMARKPEIALQVYERMVHQKLTPDTFTH 503


>gi|255540825|ref|XP_002511477.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550592|gb|EEF52079.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 754

 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 96/433 (22%), Positives = 174/433 (40%), Gaps = 23/433 (5%)

Query: 286 LPVMKVLR--WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRG 343
           +P   V R  +S++ +I++ GR     ++ +L+ +M+   + PS  TY+  I +    RG
Sbjct: 168 MPTHGVPRSVFSYTALINSYGRHGQYEVSLELLERMKKEKVTPSILTYNTVINSCA--RG 225

Query: 344 LRNGMEVLKI---MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSA 400
             N   +L +   M+   ++P   T  TL   C+     D AE +   ++        + 
Sbjct: 226 GLNWEGLLSLFAEMRHEGIQPDIITYNTLLNACANRGLGDEAEMVFRTMNEGGMVPDITT 285

Query: 401 FLAACDT---MDKPERAIKIFAKMRQKLR-PDIRTYELLFSLFGNVNAPYEEGNMFSQVD 456
           +    +T   ++K E+  ++  +M      PDI +Y +L   + +         +F Q+ 
Sbjct: 286 YRNLVETFGKLNKLEKVSELLKEMESSGNLPDISSYNVLLEAYASKGDIRHAMGVFRQMQ 345

Query: 457 SAKRI-NAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTV 515
            A+ + NA+   M           + NL    G    +REL      S T     TYN +
Sbjct: 346 EARCVPNAVTYSM-----------LLNLYGGHGRYDDVRELFLEMKVSNTEPDVGTYNVL 394

Query: 516 LHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGF 575
           +    E       + +F  M    + PN  TY  +I  C      + A  ++  M   G 
Sbjct: 395 IEVFGEGGYFKEVVTLFHDMVEENVEPNMGTYEGLIYACGKGGLHEDAKKILLHMDEKGI 454

Query: 576 YPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEF 635
            P T  YT +I+       ++EAL + + ++  G    V  YN+++      G     E 
Sbjct: 455 VPSTKAYTGVIEAYGQAASYEEALVMFNTMNEMGSKPTVETYNSLINMFARGGLYKESEA 514

Query: 636 IIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDFE 695
           I+ +M ++ V  D  + + V  GY   G    A++    L       +  T E   S + 
Sbjct: 515 IMWKMGESGVARDRDSFNGVIEGYRQGGQFEEAIKTYVELEKARFQPDERTFEAVLSVYC 574

Query: 696 DLILAEDSEAESR 708
              L ++SE + R
Sbjct: 575 TAGLVDESEEQFR 587



 Score = 79.0 bits (193), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 89/441 (20%), Positives = 179/441 (40%), Gaps = 47/441 (10%)

Query: 295 SFSDVIHACGRTQNSGLAEQLML----QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGME- 349
           +++ VI++C R    GL  + +L    +M+  G+QP   TY+  + A  ++RGL +  E 
Sbjct: 214 TYNTVINSCAR---GGLNWEGLLSLFAEMRHEGIQPDIITYNTLLNA-CANRGLGDEAEM 269

Query: 350 VLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAF---LAACD 406
           V + M +  + P  +T   L     K  +L+    LL ++    N    S++   L A  
Sbjct: 270 VFRTMNEGGMVPDITTYRNLVETFGKLNKLEKVSELLKEMESSGNLPDISSYNVLLEAYA 329

Query: 407 TMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGN----------------VNAPYEEG 449
           +      A+ +F +M++ +  P+  TY +L +L+G                  N   + G
Sbjct: 330 SKGDIRHAMGVFRQMQEARCVPNAVTYSMLLNLYGGHGRYDDVRELFLEMKVSNTEPDVG 389

Query: 450 N------MFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGM---IRELIQYF 500
                  +F +    K +  +  DM   N++ +  + + L+ A G  G+    ++++ + 
Sbjct: 390 TYNVLIEVFGEGGYFKEVVTLFHDMVEENVEPNMGTYEGLIYACGKGGLHEDAKKILLHM 449

Query: 501 CDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCF 560
            +      T  Y  V+ +  +A     A+ +F  M   G  P   TYN +I+  +    +
Sbjct: 450 DEKGIVPSTKAYTGVIEAYGQAASYEEALVMFNTMNEMGSKPTVETYNSLINMFARGGLY 509

Query: 561 KSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTI 620
           K + A++  M   G      ++  +I+     G F+EA+     +       D   +  +
Sbjct: 510 KESEAIMWKMGESGVARDRDSFNGVIEGYRQGGQFEEAIKTYVELEKARFQPDERTFEAV 569

Query: 621 LKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRML 680
           L   C  G +D  E    ++  + + P       + + Y      + A E L      M+
Sbjct: 570 LSVYCTAGLVDESEEQFREIRASGILPSVMCYCMMIAVYARSNRWDDAYEVLD----EMV 625

Query: 681 CEEVSTLEE-----KRSDFED 696
             +VS + +      + D++D
Sbjct: 626 TNKVSNIHQVVGKMMKGDYDD 646



 Score = 64.3 bits (155), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 104/483 (21%), Positives = 182/483 (37%), Gaps = 61/483 (12%)

Query: 153 GIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAV 212
           GI P +  YN+ L ACA       A +    M+   +  +  TY  L++       L  V
Sbjct: 243 GIQPDIITYNTLLNACANRGLGDEAEMVFRTMNEGGMVPDITTYRNLVETFGKLNKLEKV 302

Query: 213 HEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRL 272
            E               L K + S   L D+ S+Y  L  + A A  G +   R + G  
Sbjct: 303 SE---------------LLKEMESSGNLPDI-SSYNVL--LEAYASKGDI---RHAMGVF 341

Query: 273 RSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYD 332
           R  +    +P NA+        ++S +++  G         +L L+M+    +P   TY+
Sbjct: 342 RQMQEARCVP-NAV--------TYSMLLNLYGGHGRYDDVRELFLEMKVSNTEPDVGTYN 392

Query: 333 GFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKA-LELDLAEALL--DQI 389
             I         +  + +   M + N++P   T   L   C K  L  D  + LL  D+ 
Sbjct: 393 VLIEVFGEGGYFKEVVTLFHDMVEENVEPNMGTYEGLIYACGKGGLHEDAKKILLHMDEK 452

Query: 390 SRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEE 448
               + K ++  + A       E A+ +F  M +   +P + TY  L             
Sbjct: 453 GIVPSTKAYTGVIEAYGQAASYEEALVMFNTMNEMGSKPTVETYNSLI------------ 500

Query: 449 GNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLG 508
            NMF++    K   AI   M  + +     S   +++     G   E I+ + + +    
Sbjct: 501 -NMFARGGLYKESEAIMWKMGESGVARDRDSFNGVIEGYRQGGQFEEAIKTYVELEKARF 559

Query: 509 TP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASA 565
            P   T+  VL     A     + E F++++  GI P+   Y +MI   +    +  A  
Sbjct: 560 QPDERTFEAVLSVYCTAGLVDESEEQFREIRASGILPSVMCYCMMIAVYARSNRWDDAYE 619

Query: 566 LVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALN------LLDLVSLEGIPHDVLLYNT 619
           ++  MV +           ++K     GD+D+  N      + D ++ EG    +  YNT
Sbjct: 620 VLDEMVTNKVSNIHQVVGKMMK-----GDYDDYSNWQMVEYVFDKLNSEGCGLGMRFYNT 674

Query: 620 ILK 622
           +L+
Sbjct: 675 LLE 677



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/212 (21%), Positives = 93/212 (43%), Gaps = 9/212 (4%)

Query: 479 SMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQM-KT 537
           ++ N L +L   G I   ++ F   K  L    +  V     +  +  R++ +FK M + 
Sbjct: 79  TLINKLSSLPPRGSIARCLEIF---KNKLSLNDFALVFKEFAQRGDWQRSLRLFKYMQRQ 135

Query: 538 CGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDE 597
               PN   Y I+I         + ++ +   M   G      +YTALI     +G ++ 
Sbjct: 136 IWCKPNEHIYTIIISLLGREGLLEKSTEIFEEMPTHGVPRSVFSYTALINSYGRHGQYEV 195

Query: 598 ALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID---VIEFIIEQMHQNKVQPDPSTCHF 654
           +L LL+ +  E +   +L YNT++  +C +G ++   ++    E  H+  +QPD  T + 
Sbjct: 196 SLELLERMKKEKVTPSILTYNTVI-NSCARGGLNWEGLLSLFAEMRHEG-IQPDIITYNT 253

Query: 655 VFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           + +   N G  + A    + ++   +  +++T
Sbjct: 254 LLNACANRGLGDEAEMVFRTMNEGGMVPDITT 285


>gi|449447683|ref|XP_004141597.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29290-like [Cucumis sativus]
          Length = 600

 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 80/360 (22%), Positives = 145/360 (40%), Gaps = 54/360 (15%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           ++ +I  CG+  N   AE+    M+  G   +  TY   +   V        ++    M 
Sbjct: 258 YNTMISICGKDNNWVEAERTWRLMEKNGCSATRITYSLLVSTFVRCNQNELAIDTYVKMV 317

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQISRC---TNPKPFSAFLAACDTMDKPE 412
           QN+ KP + T+  +    SK  + D A  +   + +C    N   F+A + A     +  
Sbjct: 318 QNSFKPGNDTMQAIIGASSKEGKWDFALRVFQDMLKCGLQPNSVSFNALINALGKAKEVT 377

Query: 413 RAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471
            A  ++  M+     PD+ T+  L       N   +  ++F                   
Sbjct: 378 LAFSVYNVMKSMGHSPDVYTWNALLGALYKANRYSDAIHLF------------------- 418

Query: 472 NIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEI 531
                             E + RE +Q        L    YNT+L S  +     RA++I
Sbjct: 419 ------------------EFVKREKVQ--------LNIHIYNTILMSCSKLGLWERAVQI 452

Query: 532 FKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLD 591
             +M+  G+  + ++YNI++  C + R  + A  +   MV     P T T+ +LI+  + 
Sbjct: 453 LWEMEVSGLSISTSSYNIVMTACEMARKPEIALQVYERMVHQKHTPDTFTHLSLIRCCIW 512

Query: 592 YGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
              +DE   LL+    +  P DV +YN +++  C +G+ D+ + +  +M +N +QPD  T
Sbjct: 513 GSLWDEVELLLN----KSAP-DVSVYNVVIQGMCLRGKSDLAKKLYTKMRENGIQPDGKT 567



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 76/379 (20%), Positives = 144/379 (37%), Gaps = 75/379 (19%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL-- 369
           A +L+  MQ  GL PS H  +  +  ++ +    +G+ + + M+ N L    +    L  
Sbjct: 168 ALELLRSMQLAGLLPSLHALNSLLACLLRNELFADGLRIFEFMKLNELSTGHTYSLVLKA 227

Query: 370 ---------SVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAK 420
                    ++E  KA E     A  D I        ++  ++ C   +    A + +  
Sbjct: 228 VANAHGFLSALEMFKAWEHQCVLAQFDAIV-------YNTMISICGKDNNWVEAERTWRL 280

Query: 421 MRQKLRPDIR-TYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMD----MARNNIQH 475
           M +      R TY LL S F   N                  N + +D    M +N+ + 
Sbjct: 281 MEKNGCSATRITYSLLVSTFVRCNQ-----------------NELAIDTYVKMVQNSFKP 323

Query: 476 SHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQM 535
            + +M+ ++ A   EG                                +   A+ +F+ M
Sbjct: 324 GNDTMQAIIGASSKEG--------------------------------KWDFALRVFQDM 351

Query: 536 KTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDF 595
             CG+ PN+ ++N +I+     +    A ++ ++M   G  P   T+ AL+  L     +
Sbjct: 352 LKCGLQPNSVSFNALINALGKAKEVTLAFSVYNVMKSMGHSPDVYTWNALLGALYKANRY 411

Query: 596 DEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFV 655
            +A++L + V  E +  ++ +YNTIL    + G  +    I+ +M  + +    S+ + V
Sbjct: 412 SDAIHLFEFVKREKVQLNIHIYNTILMSCSKLGLWERAVQILWEMEVSGLSISTSSYNIV 471

Query: 656 FSGYVNCGFHNSAMEALQV 674
            +    C        ALQV
Sbjct: 472 MTA---CEMARKPEIALQV 487



 Score = 47.4 bits (111), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 56/283 (19%), Positives = 116/283 (40%), Gaps = 46/283 (16%)

Query: 160 VYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDY 219
           VYN+ +  C K ++ V A     LM+        +TY+ L+   V               
Sbjct: 257 VYNTMISICGKDNNWVEAERTWRLMEKNGCSATRITYSLLVSTFV--------------R 302

Query: 220 IKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEG------RLR 273
                L+I +  K V +       K   +T+Q ++  +         + EG      R+ 
Sbjct: 303 CNQNELAIDTYVKMVQN-----SFKPGNDTMQAIIGAS---------SKEGKWDFALRVF 348

Query: 274 SSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDG 333
              L   +  N++        SF+ +I+A G+ +   LA  +   M+S+G  P  +T++ 
Sbjct: 349 QDMLKCGLQPNSV--------SFNALINALGKAKEVTLAFSVYNVMKSMGHSPDVYTWNA 400

Query: 334 FIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI---S 390
            + A+       + + + + +++  ++       T+ + CSK    + A  +L ++    
Sbjct: 401 LLGALYKANRYSDAIHLFEFVKREKVQLNIHIYNTILMSCSKLGLWERAVQILWEMEVSG 460

Query: 391 RCTNPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTY 432
              +   ++  + AC+   KPE A++++ +M  QK  PD  T+
Sbjct: 461 LSISTSSYNIVMTACEMARKPEIALQVYERMVHQKHTPDTFTH 503


>gi|449481246|ref|XP_004156125.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g02150-like [Cucumis
           sativus]
          Length = 822

 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 94/202 (46%), Gaps = 3/202 (1%)

Query: 478 ISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQ 534
           ++  +L+   G  G + E+   F + K     P   TYN +++   + ++  RA E F +
Sbjct: 266 VTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSE 325

Query: 535 MKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGD 594
           MK  G+ PN  TY+ +ID        + A  L+  M R G  P   TYT+LI      G+
Sbjct: 326 MKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTSLIDANCKAGN 385

Query: 595 FDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHF 654
             EA  LL+ +   G+  +++ Y  +L   C+ GR+   E +   M ++ + P+      
Sbjct: 386 LTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTA 445

Query: 655 VFSGYVNCGFHNSAMEALQVLS 676
           +  GY+       AM+ L+ ++
Sbjct: 446 LVHGYIKAERMEDAMKILKQMT 467



 Score = 83.2 bits (204), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 64/289 (22%), Positives = 126/289 (43%), Gaps = 28/289 (9%)

Query: 412 ERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSA------------ 458
           E + ++F +MR+  L PD+ TY  L   +G V +  E  ++F+++               
Sbjct: 247 ENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGL 306

Query: 459 --------KRINAIEM--DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLG 508
                   K   A E   +M  N ++ + ++   L+ A   EGM++  I+   D +    
Sbjct: 307 INCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLLXDMRRTGL 366

Query: 509 TP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID-CCSIIRCFKSAS 564
            P   TY +++ +  +A     A ++   M   G+  N  TY  ++D  C   R  ++  
Sbjct: 367 LPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEE 426

Query: 565 ALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKA 624
              SM+ +DG  P    YTAL+   +     ++A+ +L  ++   I  D++LY +I+   
Sbjct: 427 VFRSML-KDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGH 485

Query: 625 CEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           C + +++  + I+E+M    +  +P     +   Y   G  + A+   Q
Sbjct: 486 CSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQ 534



 Score = 79.7 bits (195), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 90/389 (23%), Positives = 158/389 (40%), Gaps = 32/389 (8%)

Query: 295 SFSDVIHA-CGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           ++S +I A C      G A +L+  M+  GL P+  TY   I A      L    ++L  
Sbjct: 337 TYSTLIDAFCKEGMMQG-AIKLLXDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLND 395

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALL-----DQISRCTNPKPFSAFLAACDTM 408
           M Q  +K    T   L     KA  +  AE +      D IS   N + ++A +      
Sbjct: 396 MLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGIS--PNQQVYTALVHGYIKA 453

Query: 409 DKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM- 466
           ++ E A+KI  +M +  ++PD+  Y                G++     S +++   ++ 
Sbjct: 454 ERMEDAMKILKQMTECNIKPDLILY----------------GSIIWGHCSQRKLEETKLI 497

Query: 467 --DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFC---DSKTPLGTPTYNTVLHSLVE 521
             +M    I  + +    ++ A    G   + + +F    D        TY  ++  L E
Sbjct: 498 LEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCE 557

Query: 522 AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMT 581
           A     A++ F +M + G+ PN A Y  +ID      C +SA  L   M   G  P    
Sbjct: 558 AGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCXNNCIESAKKLFDEMQCRGMTPDITA 617

Query: 582 YTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMH 641
           +TALI   L +G+  EAL L+  ++   I  D+ +Y +++    + G +        +M 
Sbjct: 618 FTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMI 677

Query: 642 QNKVQPDPSTCHFVFSGYVNCGFHNSAME 670
           +  + P+   C  +   Y   G  + A+E
Sbjct: 678 EKGILPEEVLCICLLREYYKRGQLDEAIE 706



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 83/424 (19%), Positives = 166/424 (39%), Gaps = 49/424 (11%)

Query: 299 VIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNN 358
           ++H   ++ N  L  +    M   G+ PS  TY+  I  +  +  L N   +   M++  
Sbjct: 201 LLHRLSKSGNGQLVRKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMG 260

Query: 359 LKPQDSTIATLSVECSKALELDLAEALLDQ---ISRCTNPKPFSAFLAACDTMDKPERAI 415
           L P   T  +L     K   L+   +L ++   +    +   ++  +      +K  RA 
Sbjct: 261 LSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAF 320

Query: 416 KIFAKMRQK-LRPDIRTYELLFSLFGN-----------------------------VNAP 445
           + F++M+   L+P++ TY  L   F                               ++A 
Sbjct: 321 EYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTSLIDAN 380

Query: 446 YEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYF----C 501
            + GN+    ++ K +N    DM +  ++ + ++   LL  L   G + E  + F     
Sbjct: 381 CKAGNL---TEAWKLLN----DMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLK 433

Query: 502 DSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFK 561
           D  +P     Y  ++H  ++A+    AM+I KQM  C I P+   Y  +I      R  +
Sbjct: 434 DGISP-NQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLE 492

Query: 562 SASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTIL 621
               ++  M   G     +  T +I      G   +ALN    +   G+   ++ Y  ++
Sbjct: 493 ETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLI 552

Query: 622 KKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLC 681
              CE G +++      +M    +QP+ +    V++  ++    N+ +E+ + L   M C
Sbjct: 553 DGLCEAGIVELAVDYFCRMLSLGLQPNVA----VYTSLIDGLCXNNCIESAKKLFDEMQC 608

Query: 682 EEVS 685
             ++
Sbjct: 609 RGMT 612



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/221 (19%), Positives = 91/221 (41%), Gaps = 10/221 (4%)

Query: 431 TYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAE 490
            +++LFS+F  +    E    FS++   +    +    + N + H        L   G  
Sbjct: 162 VFDVLFSVFVELGLLEEANECFSRM---RNFRTLPKARSCNFLLHR-------LSKSGNG 211

Query: 491 GMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIM 550
            ++R+       +       TYN ++  L +  +   +  +F QM+  G+ P+  TYN +
Sbjct: 212 QLVRKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSL 271

Query: 551 IDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGI 610
           ID    +   +  ++L + M   G  P  +TY  LI     +     A      +   G+
Sbjct: 272 IDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGL 331

Query: 611 PHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
             +V+ Y+T++   C++G +     ++  M +  + P+  T
Sbjct: 332 KPNVVTYSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFT 372



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/277 (22%), Positives = 117/277 (42%), Gaps = 13/277 (4%)

Query: 409 DKPERAIKIF--AKMRQKLRPDIRTYELLFSL------FGNVNAPYEEGNMFSQVDSAKR 460
           + P+ A+K F  A  +   R    +Y ++  L      + + +   +E  M S++D    
Sbjct: 82  EDPKLALKFFKWAGSQVGFRHTTESYCIIVHLVFRARMYTDAHDTVKEVIMNSRMDMGFP 141

Query: 461 I-NAIEMDMARNNIQHSHISMKNLLKALGAE-GMIRELIQYFCDSKTPLGTP---TYNTV 515
           + N  +M  +  NI  S   + ++L ++  E G++ E  + F   +     P   + N +
Sbjct: 142 VCNIFDMLWSTRNICVSGSGVFDVLFSVFVELGLLEEANECFSRMRNFRTLPKARSCNFL 201

Query: 516 LHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGF 575
           LH L ++       + F  M   GI P+  TYN+MID        +++  L   M   G 
Sbjct: 202 LHRLSKSGNGQLVRKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGL 261

Query: 576 YPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEF 635
            P  +TY +LI      G  +E  +L + +   G   D++ YN ++   C+  ++     
Sbjct: 262 SPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFE 321

Query: 636 IIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEAL 672
              +M  N ++P+  T   +   +   G    A++ L
Sbjct: 322 YFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLL 358



 Score = 42.7 bits (99), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 83/380 (21%), Positives = 152/380 (40%), Gaps = 33/380 (8%)

Query: 96  YCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIY 155
           YC     P    E +  M+   +  N   Y  ++ A CK G ++ A  L+  +  R G+ 
Sbjct: 310 YCKFEKMPR-AFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLLXDM-RRTGLL 367

Query: 156 PILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEI 215
           P    Y S + A  K  ++  A   L+ M    V  N VTYT LL        +    E+
Sbjct: 368 PNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEV 427

Query: 216 WEDYIKH-YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA------LAMMGKLYINRTS 268
           +   +K   S +       V  + +   ++ A + L+ M        L + G +     S
Sbjct: 428 FRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCS 487

Query: 269 EGRLRSSRLDI----PIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGL 324
           + +L  ++L +       ++A PV+       + +I A  +   S  A     +MQ +G+
Sbjct: 488 QRKLEETKLILEEMKSRGISANPVIS------TTIIDAYFKAGKSSDALNFFQEMQDVGV 541

Query: 325 QPSSHTY----DGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELD 380
           + +  TY    DG   A + +  +     +L +  Q N+    S I  L   C     ++
Sbjct: 542 EATIVTYCVLIDGLCEAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGL---CXNNC-IE 597

Query: 381 LAEALLDQISRCTNPKP-FSAFLAACDTMDKP---ERAIKIFAKMRQ-KLRPDIRTYELL 435
            A+ L D++ +C    P  +AF A  D   K    + A+ + ++M +  +  D+  Y  L
Sbjct: 598 SAKKLFDEM-QCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSL 656

Query: 436 FSLFGNVNAPYEEGNMFSQV 455
            S F      ++    F+++
Sbjct: 657 VSGFSQCGELHQARKFFNEM 676


>gi|359485815|ref|XP_003633341.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Vitis vinifera]
          Length = 822

 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 86/370 (23%), Positives = 162/370 (43%), Gaps = 22/370 (5%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A  L  QM + G+QPS  T++  I  +     +R    +L  + Q +L P   T  +L +
Sbjct: 182 ARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLIL 241

Query: 372 ECSKALELDLAEALLDQISR--C-TNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRP 427
              +   LDLA  + D++ +  C  N   +S  +       + + A+ +  +M +K + P
Sbjct: 242 GHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEP 301

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL 487
            + TY L  +    +    E   + +++              R N+Q ++ ++ + L  L
Sbjct: 302 TVYTYTLPITALCAIEHEEEAIELVARMKKRG---------CRPNVQ-TYTALISGLSRL 351

Query: 488 G----AEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPN 543
           G    A G+  ++++   +   P  T TYN +++ L        A++IF  M+  G   N
Sbjct: 352 GKLEVAIGLYHKMLK---EGLVP-NTVTYNALINELCVGGRFSTALKIFHWMEGHGSLAN 407

Query: 544 AATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLD 603
             TYN +I    +    + A  L   M++ G  P  +TY  LI   L  G+ + A  LLD
Sbjct: 408 TQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLD 467

Query: 604 LVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
           L+   G   D   YN ++    + G+++   F  ++M +  + P+P +   +  G+   G
Sbjct: 468 LMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDG 527

Query: 664 FHNSAMEALQ 673
             + A+  L+
Sbjct: 528 KVDIALSLLK 537



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 91/378 (24%), Positives = 162/378 (42%), Gaps = 22/378 (5%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           ++++ +I    R +N  LA  +  +M   G  P+S TY   I  + ++  +   +++L+ 
Sbjct: 234 FTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEE 293

Query: 354 MQQNNLKPQDST----IATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMD 409
           M +  ++P   T    I  L     +   ++L   +  +  R  N + ++A ++    + 
Sbjct: 294 MIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCR-PNVQTYTALISGLSRLG 352

Query: 410 KPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
           K E AI ++ KM ++ L P+  TY  L +           G  FS   + K  + +E   
Sbjct: 353 KLEVAIGLYHKMLKEGLVPNTVTYNALINELC-------VGGRFST--ALKIFHWMEGHG 403

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRELIQYFCD--SKTPLGTP-TYNTVLHSLVEAQES 525
           +  N Q    +   ++K L   G I + +  F       PL T  TYNT+++  +     
Sbjct: 404 SLANTQ----TYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNV 459

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
           + A  +   MK  G  P+  TYN ++   S     +SAS     MV  G  P  ++YTAL
Sbjct: 460 NNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTAL 519

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           I      G  D AL+LL  +   G   +V  YN ++    ++ R    E I ++M +  +
Sbjct: 520 IDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGL 579

Query: 646 QPDPSTCHFVFSGYVNCG 663
            P+  T   +  G    G
Sbjct: 580 LPNVITYTTLIDGLCRNG 597



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 92/211 (43%), Gaps = 3/211 (1%)

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQE 524
           M +     + ++   L+  L  EG + E   +++   +        TY   + +L   + 
Sbjct: 259 MVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEH 318

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
              A+E+  +MK  G  PN  TY  +I   S +   + A  L   M+++G  P T+TY A
Sbjct: 319 EEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNA 378

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
           LI  L   G F  AL +   +   G   +   YN I+K  C  G I+    + E+M +  
Sbjct: 379 LINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMG 438

Query: 645 VQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
             P   T + + +GY+  G  N+A   L ++
Sbjct: 439 PLPTVVTYNTLINGYLTKGNVNNAARLLDLM 469



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 119/576 (20%), Positives = 216/576 (37%), Gaps = 74/576 (12%)

Query: 124 CYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDL 183
           C  L++Q L K   +E A NL Y      GI P L  +N+ +   +K             
Sbjct: 166 CNTLLIQ-LAKFEMVEGARNL-YKQMLNSGIQPSLLTFNTLINILSK------------- 210

Query: 184 MDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDL 243
                  K +V   EL+   ++Q +LS                +F+    +    R R+L
Sbjct: 211 -------KGKVREAELILSQIFQYDLSP--------------DVFTYTSLILGHCRNRNL 249

Query: 244 KSAYETLQHMVALA------MMGKLYINRTSEGRLRSS--RLDIPIPLNALPVMKVLRWS 295
             A+     MV             L     +EGR+  +   L+  I     P +    ++
Sbjct: 250 DLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTV----YT 305

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           ++  I A    ++   A +L+ +M+  G +P+  TY   I  +     L   + +   M 
Sbjct: 306 YTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKML 365

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEAL---LDQISRCTNPKPFSAFLAACDTMDKPE 412
           +  L P   T   L  E         A  +   ++      N + ++  +         E
Sbjct: 366 KEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIE 425

Query: 413 RAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471
           +A+ +F KM +    P + TY  L      +N    +GN    V++A R+  +   M  N
Sbjct: 426 KAMVLFEKMLKMGPLPTVVTYNTL------INGYLTKGN----VNNAARLLDL---MKEN 472

Query: 472 NIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRA 528
             +    +   L+      G +     YF +       P   +Y  ++    +  +   A
Sbjct: 473 GCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIA 532

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
           + + K+M+  G  PN  +YN +I+  S    F  A  +   MV  G  P  +TYT LI  
Sbjct: 533 LSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDG 592

Query: 589 LLDYGDFDEALNLL-DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
           L   G    A  +  D+   + +P ++  Y++++   C++G+ D      E+M +   +P
Sbjct: 593 LCRNGRTQFAFKIFHDMEKRKCLP-NLYTYSSLIYGLCQEGKADE----AERMSEIGCEP 647

Query: 648 DPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEE 683
              T   + SG    G    A + ++ +  R  C +
Sbjct: 648 TLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPD 683



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 73/367 (19%), Positives = 145/367 (39%), Gaps = 35/367 (9%)

Query: 315 LMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECS 374
           L  +M  +G  P+  TY+  I   ++   + N   +L +M++N  +P + T   L    S
Sbjct: 430 LFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFS 489

Query: 375 KALELDLAEALLDQISRCT-NPKP--FSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIR 430
           K  +L+ A     ++  C  NP P  ++A +       K + A+ +  +M +    P++ 
Sbjct: 490 KWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVE 549

Query: 431 TYELLFSLFGNVN----------APYEEGNMFSQVDSAKRINA------------IEMDM 468
           +Y  + +     N             E+G + + +     I+             I  DM
Sbjct: 550 SYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDM 609

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQES 525
            +     +  +  +L+  L  EG   E   + +  C+        TY+T++  L      
Sbjct: 610 EKRKCLPNLYTYSSLIYGLCQEGKADEAERMSEIGCEPTLD----TYSTLVSGLCRKGRF 665

Query: 526 HRAMEIFKQMKTCGIPPNAATY-NIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
           + A ++ K MK  G  P+   Y +++I  C  +    +     S+  + GF      Y A
Sbjct: 666 YEAEQLVKDMKERGFCPDREIYYSLLIAHCKNLEVDHALKIFHSIEAK-GFQLHLSIYRA 724

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
           LI  L   G  +EA  L D +  +    D +++  ++    ++G +D+   ++  M    
Sbjct: 725 LICALCKAGQVEEAQALFDNMLEKEWNADEIVWTVLVDGLLKEGELDLCMKLLHIMESKN 784

Query: 645 VQPDPST 651
             P+  T
Sbjct: 785 FTPNIQT 791


>gi|41152687|dbj|BAD08212.1| hypothetical protein [Oryza sativa Indica Group]
 gi|46091163|dbj|BAD13710.1| PPR protein [Oryza sativa Indica Group]
 gi|67906116|dbj|BAE00068.1| PPR protein [Oryza sativa Indica Group]
 gi|114437073|gb|ABI74690.1| fertility restorer [Oryza sativa Indica Group]
          Length = 683

 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 89/397 (22%), Positives = 165/397 (41%), Gaps = 14/397 (3%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ ++H    +     A   + +M+S G++P   TY+  +  +  +       ++   M
Sbjct: 160 TYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSM 219

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT---NPKPFSAFLAACDTMDKP 411
            +  LKP+ +T  TL    +    L     LLD + R     N   FS  + A    +K 
Sbjct: 220 TKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKV 279

Query: 412 ERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           E A+ +F+KMRQ+ L P+  TY  +  +        +    F Q+        I+  ++ 
Sbjct: 280 EEAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQM--------IDEGLSP 331

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAME 530
            NI ++  S+ + L          ELI    D    L T  +N+++ S  +      + +
Sbjct: 332 GNIVYN--SLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEK 389

Query: 531 IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590
           +F  M   G+ P+  TY+ +ID   +      A+ L++ MV  G  P  +TY+ LI    
Sbjct: 390 LFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYSTLINGYC 449

Query: 591 DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650
                 +AL L   +   G+  D++ YN IL+   +  R    + +   + ++  Q + S
Sbjct: 450 KISRMKDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITKSGRQLELS 509

Query: 651 TCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTL 687
           T + +  G       + A+   Q L +  L  E  T 
Sbjct: 510 TYNIILHGLCKNKLTDDALRMFQNLCLMDLKLEARTF 546



 Score = 79.3 bits (194), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 82/365 (22%), Positives = 147/365 (40%), Gaps = 31/365 (8%)

Query: 324 LQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAE 383
           + P+  TY+  I A+   + +   MEVL  M ++ + P   T  ++      + +   A 
Sbjct: 119 ISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAI 178

Query: 384 ALLDQISRCTNPKPFSAFLAACDTMDKPER---AIKIFAKMRQK-LRPDIRTYELLFSLF 439
             L ++           + +  D + K  R   A KIF  M ++ L+P+I TY  L   +
Sbjct: 179 VFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPEITTYGTLLQGY 238

Query: 440 GNVNAPYEEGNM----------------------FSQVDSAKRINAIEMDMARNNIQHSH 477
               A  E   +                      +++ +  +    +   M +  +  + 
Sbjct: 239 ATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNA 298

Query: 478 ISMKNLLKALGAEGMIRELIQYF---CDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQ 534
           ++   ++  L   G + + + YF    D     G   YN+++H L    +  RA E+  +
Sbjct: 299 VTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILE 358

Query: 535 MKTCGIPPNAATYNIMIDC-CSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYG 593
           M   GI  N   +N +ID  C   R  +S   L  +MVR G  P  +TY+ LI      G
Sbjct: 359 MLDRGICLNTIFFNSIIDSHCKEGRVIES-EKLFDLMVRIGVKPDIITYSTLIDGYCLAG 417

Query: 594 DFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCH 653
             DEA  LL  +   G+  D + Y+T++   C+  R+     +  +M  + V PD  T +
Sbjct: 418 KMDEATKLLASMVSVGMKPDCVTYSTLINGYCKISRMKDALVLFREMESSGVSPDIITYN 477

Query: 654 FVFSG 658
            +  G
Sbjct: 478 IILQG 482



 Score = 71.6 bits (174), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 77/171 (45%), Gaps = 2/171 (1%)

Query: 495 ELIQYFCD--SKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID 552
           EL+    D     P    +Y+TV++   +  +  +    + +M    I PN  TYN +I 
Sbjct: 72  ELLHIMADDGGDCPPDVVSYSTVINGFFKEGDLDKTYSTYNEMLDQRISPNVVTYNSIIA 131

Query: 553 CCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPH 612
                +    A  +++ MV+ G  P  MTY +++      G   EA+  L  +  +G+  
Sbjct: 132 ALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEP 191

Query: 613 DVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
           DV+ YN+++   C+ GR      I + M +  ++P+ +T   +  GY   G
Sbjct: 192 DVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPEITTYGTLLQGYATKG 242



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 87/397 (21%), Positives = 149/397 (37%), Gaps = 81/397 (20%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ +I A  + Q    A +++  M   G+ P   TY+  +    S    +  +  LK M
Sbjct: 125 TYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKM 184

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERA 414
           + + ++P   T  +L         +D     L +  RCT  +                  
Sbjct: 185 RSDGVEPDVVTYNSL---------MDY----LCKNGRCTEAR------------------ 213

Query: 415 IKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNI 473
            KIF  M ++ L+P+I TY  L   +    A  E   M   +D           M RN I
Sbjct: 214 -KIFDSMTKRGLKPEITTYGTLLQGYATKGALVE---MHGLLDL----------MVRNGI 259

Query: 474 QHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFK 533
             +H     L+ A   +  + E                                AM +F 
Sbjct: 260 HPNHYVFSILVCAYAKQEKVEE--------------------------------AMLVFS 287

Query: 534 QMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYG 593
           +M+  G+ PNA TY  +I         + A      M+ +G  P  + Y +LI  L    
Sbjct: 288 KMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCN 347

Query: 594 DFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCH 653
            ++ A  L+  +   GI  + + +N+I+   C++GR+   E + + M +  V+PD  T  
Sbjct: 348 KWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYS 407

Query: 654 FVFSGYVNCGFHNSAMEALQVL---SMRMLCEEVSTL 687
            +  GY   G  + A + L  +    M+  C   STL
Sbjct: 408 TLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYSTL 444



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 127/610 (20%), Positives = 228/610 (37%), Gaps = 75/610 (12%)

Query: 59  IVDALCRGERSRASHLLLNLGHAHHSLGAD------DFFHILNYCARSPDPLFVMETWRM 112
           +++ LC   RS+ +   L L H     G D       +  ++N   +  D      T+  
Sbjct: 57  LLNGLCDENRSQEA---LELLHIMADDGGDCPPDVVSYSTVINGFFKEGDLDKTYSTYNE 113

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
           M ++ I  N   Y  ++ ALCK   +++A  ++  +  + G+ P    YNS +       
Sbjct: 114 MLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTM-VKSGVMPDCMTYNSIVHGFCSSG 172

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRK 232
               A + L  M S  V  + VTY  L+         +   +I++   K         R 
Sbjct: 173 QPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTK---------RG 223

Query: 233 FVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVL 292
                T    L   Y T   +V +  +                 LD+ +     P     
Sbjct: 224 LKPEITTYGTLLQGYATKGALVEMHGL-----------------LDLMVRNGIHPN---- 262

Query: 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
            + FS ++ A  + +    A  +  +M+  GL P++ TY   I  +     + + M   +
Sbjct: 263 HYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFE 322

Query: 353 IMQQNNLKPQDSTIATLSVECSKALELDLAEAL-LDQISR--CTNPKPFSAFLAACDTMD 409
            M    L P +    +L        + + AE L L+ + R  C N   F++ +   D+  
Sbjct: 323 QMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSII---DSHC 379

Query: 410 KPERAI---KIFAKM-RQKLRPDIRTYELL---FSLFGNVNAPYE-------EG------ 449
           K  R I   K+F  M R  ++PDI TY  L   + L G ++   +        G      
Sbjct: 380 KEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCV 439

Query: 450 ------NMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAE---GMIRELIQYF 500
                 N + ++   K    +  +M  + +    I+   +L+ L         +EL    
Sbjct: 440 TYSTLINGYCKISRMKDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGI 499

Query: 501 CDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCF 560
             S   L   TYN +LH L + + +  A+ +F+ +    +   A T+NIMID    +   
Sbjct: 500 TKSGRQLELSTYNIILHGLCKNKLTDDALRMFQNLCLMDLKLEARTFNIMIDALLKVGRN 559

Query: 561 KSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTI 620
             A  L      +G  P   TY  + + ++  G  +E   L   +   G   D  + N I
Sbjct: 560 DEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFI 619

Query: 621 LKKACEKGRI 630
           +++  ++G I
Sbjct: 620 VRELLQRGEI 629



 Score = 60.5 bits (145), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 67/341 (19%), Positives = 137/341 (40%), Gaps = 52/341 (15%)

Query: 382 AEALLDQISRCTNPKPFSAFL---AACDTMDKPERAIK---IFAKMRQKLRPDIRTYELL 435
           A  + D++ R   P  FS  +     CD  ++ + A++   I A       PD+ +Y  +
Sbjct: 36  ARHVFDELLRRGIPDVFSYNILLNGLCDE-NRSQEALELLHIMADDGGDCPPDVVSYSTV 94

Query: 436 FSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRE 495
                 +N  ++EG++     +   +  ++  ++ N + ++ I +  L KA   +  + E
Sbjct: 95  ------INGFFKEGDLDKTYSTYNEM--LDQRISPNVVTYNSI-IAALCKAQTVDKAM-E 144

Query: 496 LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID-CC 554
           ++     S       TYN+++H    + +   A+   K+M++ G+ P+  TYN ++D  C
Sbjct: 145 VLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLC 204

Query: 555 SIIRC----------------------------FKSASALVSM------MVRDGFYPQTM 580
              RC                            + +  ALV M      MVR+G +P   
Sbjct: 205 KNGRCTEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHY 264

Query: 581 TYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQM 640
            ++ L+         +EA+ +   +  +G+  + + Y  ++   C+ GR++      EQM
Sbjct: 265 VFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQM 324

Query: 641 HQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLC 681
               + P     + +  G   C     A E +  +  R +C
Sbjct: 325 IDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGIC 365


>gi|225451354|ref|XP_002275019.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 744

 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 90/403 (22%), Positives = 161/403 (39%), Gaps = 28/403 (6%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           ++  +I+   +  N+  A +L+  M+    QP    Y   I ++  DR +     +   M
Sbjct: 163 TYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQM 222

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT---NPKPFSAFLAACDTMDKP 411
               + P   T  +L        E      LL+Q+       +   FS  + A     K 
Sbjct: 223 VGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKV 282

Query: 412 ERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMF-SQVDSAKRINAIEMDMA 469
             A +I   M Q+ + PD+ TY  L            +G+   S++D A ++  +   M 
Sbjct: 283 TEAHEIVDMMIQRGVEPDVVTYTTLM-----------DGHCLQSEMDEAVKVFDM---MV 328

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYF---CDSKTPLGTPTYNTVLHSLVEAQESH 526
           R       IS   L+        I + +  F   C  +    T TYNT++H L       
Sbjct: 329 RKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMHGLCHVGRLQ 388

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
            A+ +F +M   G  P+  TY+I++D        + A AL+  +      P    Y  +I
Sbjct: 389 DAIALFHEMVARGQMPDLVTYSILLDSLCKNCHLEEAMALLKAIEASNLNPDIQVYNIII 448

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
             +   G+ + A +L   +S +G+   V  YN ++   C++G ++    +  +M  N   
Sbjct: 449 DGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCS 508

Query: 647 PDPSTCHFVFSGYVNCGFHNSAMEALQVLS---MRMLCEEVST 686
           PD  T + +  G++    +N  + A+Q+L     R    +VST
Sbjct: 509 PDGCTYNTIARGFLQ---NNETLRAIQLLEEMLARGFSADVST 548



 Score = 68.9 bits (167), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 69/143 (48%)

Query: 506 PLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASA 565
           P     +  +L S+ + +     + +  QM + G+PPN  T NI+I+    +     A +
Sbjct: 53  PPSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILINSFCHLNRVGFAFS 112

Query: 566 LVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKAC 625
           +++ +++ G  P   T+T LI+ L   G   EAL+L D +  EG   +V+ Y T++   C
Sbjct: 113 VLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLC 172

Query: 626 EKGRIDVIEFIIEQMHQNKVQPD 648
           + G       ++  M Q   QPD
Sbjct: 173 KVGNTSAAIRLLRSMEQGNCQPD 195



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 48/202 (23%), Positives = 84/202 (41%), Gaps = 38/202 (18%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID-CCSI------IRCFKS- 562
           T+ T++  L    +   A+ +F +M   G  PN  TY  +I+  C +      IR  +S 
Sbjct: 128 TFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSM 187

Query: 563 ---------------------------ASALVSMMVRDGFYPQTMTYTALIKILLDYGDF 595
                                      A  L S MV  G  P   TYT+L+  L +  ++
Sbjct: 188 EQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEW 247

Query: 596 DEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFV 655
                LL+ +    I  DV++++T++   C++G++     I++ M Q  V+PD  T   +
Sbjct: 248 KHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTL 307

Query: 656 FSGYVNCGFHNSAMEALQVLSM 677
             G+      +   EA++V  M
Sbjct: 308 MDGHC---LQSEMDEAVKVFDM 326



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 68/330 (20%), Positives = 135/330 (40%), Gaps = 24/330 (7%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           ++++ ++HA            L+ QM +  + P    +   + A+  +  +    E++ +
Sbjct: 232 FTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDM 291

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDK 410
           M Q  ++P   T  TL        E+D A  + D + R     +   ++  +     + K
Sbjct: 292 MIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHK 351

Query: 411 PERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRIN-----AI 464
            ++A+ +F +M R++  PD +TY  L     +V    +   +F ++ +  ++      +I
Sbjct: 352 IDKAMYLFEEMCRKEWIPDTKTYNTLMHGLCHVGRLQDAIALFHEMVARGQMPDLVTYSI 411

Query: 465 EMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQE 524
            +D    N  H   +M  LLKA+ A  +  ++               YN ++  +  A E
Sbjct: 412 LLDSLCKNC-HLEEAMA-LLKAIEASNLNPDI-------------QVYNIIIDGMCRAGE 456

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
              A ++F  + + G+ P+  TYNIMI           A+ L   M  +   P   TY  
Sbjct: 457 LEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDGCTYNT 516

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDV 614
           + +  L   +   A+ LL+ +   G   DV
Sbjct: 517 IARGFLQNNETLRAIQLLEEMLARGFSADV 546



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/144 (22%), Positives = 58/144 (40%)

Query: 505 TPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSAS 564
            P    T N +++S         A  +  ++   G  P+  T+  +I    +      A 
Sbjct: 87  VPPNVYTLNILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEAL 146

Query: 565 ALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKA 624
            L   M+ +GF P  +TY  LI  L   G+   A+ LL  +       DV++Y +I+   
Sbjct: 147 HLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSL 206

Query: 625 CEKGRIDVIEFIIEQMHQNKVQPD 648
           C+  ++     +  QM    + PD
Sbjct: 207 CKDRQVTEAFNLFSQMVGQGISPD 230


>gi|222629097|gb|EEE61229.1| hypothetical protein OsJ_15269 [Oryza sativa Japonica Group]
          Length = 855

 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 84/353 (23%), Positives = 139/353 (39%), Gaps = 75/353 (21%)

Query: 308 NSGLAEQ---LMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDS 364
            +GL EQ   L  +M+S+G  P+  TY   I A +  + +    ++   M     +P D 
Sbjct: 335 KAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDV 394

Query: 365 TIATLSVECSKALELDLAEALLDQISRCTN-PKPFSAFLAACDTMDKPERAIKIFAKMRQ 423
           T                  AL+D + +  N  K F  +     T D  +       + R 
Sbjct: 395 TYG----------------ALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRH 438

Query: 424 KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNL 483
            L P++ TY  L                   VD   + + ++         H+H     L
Sbjct: 439 TLAPNVVTYGAL-------------------VDGLCKAHKVD---------HAH----EL 466

Query: 484 LKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPN 543
           L A+ + G     I              Y+ ++    +A +   A E+F QM  CG  P+
Sbjct: 467 LDAMLSSGCEPNHI-------------VYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPS 513

Query: 544 AATYNIMIDCCSIIRCFKS-----ASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEA 598
             TY  +ID     R FK      A  ++S M++D   P  +TYTA+I  L   G+ ++A
Sbjct: 514 VHTYTSLID-----RMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKA 568

Query: 599 LNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
           L LL L+  +G   +V+ Y  ++    + G+ID+   +  QM +    P+  T
Sbjct: 569 LKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVT 621



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 117/513 (22%), Positives = 200/513 (38%), Gaps = 68/513 (13%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y +++ + CK G +E+A  L   +    G  P +  Y + + A  K   +  AN     M
Sbjct: 326 YTILIDSFCKAGLIEQAQWLFEEM-RSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRM 384

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLK 244
                  N+VTY  L+       N+S   E+   Y K    S  +   F +       L 
Sbjct: 385 VDAGCRPNDVTYGALVDGLCKAGNISKAFEV---YAKLIGTSDSADSDFYFPCEDRHTLA 441

Query: 245 SAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWS--------F 296
               T   +V              +G  ++ ++D     +A  ++  +  S        +
Sbjct: 442 PNVVTYGALV--------------DGLCKAHKVD-----HAHELLDAMLSSGCEPNHIVY 482

Query: 297 SDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQ 356
             +I    +      A+++ LQM   G  PS HTY   I  +  D  L   M+VL  M +
Sbjct: 483 DALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLK 542

Query: 357 NNLKPQDSTIATLS------VECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDK 410
           ++  P   T   +        E  KAL+L    +L+++     N   ++A +       K
Sbjct: 543 DSCTPNVVTYTAMIDGLCRIGESEKALKL---LSLMEEKGCSPNVVTYTALIDGLGKAGK 599

Query: 411 PERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI-NAIEMDM 468
            + ++ +F +M R+   P+  TY +L      +N     G     +D A+ +   ++   
Sbjct: 600 IDLSLDLFTQMSRKGCSPNYVTYRVL------INHLCAAG----LLDKARLLLGEMKQTY 649

Query: 469 ARNNIQHSHISMKNLLKALGAE-GMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHR 527
               +Q    +++   K+  A  G++ E+  Y      P+  P Y  ++    +A     
Sbjct: 650 WPKYLQGYRCAIQGFSKSFIASLGILEEMESY---GTVPIA-PVYGMLIDCFSKAGRLEI 705

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKS----ASALVSMMVRDGFYPQTMTYT 583
           AME+ K+M    +P +  T N M        C  S    A  L S M R GF P+   + 
Sbjct: 706 AMELHKEMME--VPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMTRRGFVPELSVFV 763

Query: 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLL 616
            LIK L++   +DEAL L       GI H+V L
Sbjct: 764 CLIKGLVEVKKWDEALQL-----CYGICHEVGL 791



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/181 (23%), Positives = 70/181 (38%), Gaps = 41/181 (22%)

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI-------------------- 551
           +N+++HS    ++   A ++  +M TCG PP    YNI I                    
Sbjct: 180 FNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEK 239

Query: 552 ---------------DCCSIIRC------FKSASALVSMMVRDGFYPQTMTYTALIKILL 590
                          +  +  RC      F  A  L+  M+R GF P T TY+ +I  L 
Sbjct: 240 IYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLC 299

Query: 591 DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650
                ++A  L   + + G+  DV  Y  ++   C+ G I+  +++ E+M      P   
Sbjct: 300 HATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVV 359

Query: 651 T 651
           T
Sbjct: 360 T 360



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 74/406 (18%), Positives = 154/406 (37%), Gaps = 36/406 (8%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRN------GME 349
           F+ ++H+    ++   A +L+ +M + G  P    Y+ FI +I     L +        +
Sbjct: 180 FNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEK 239

Query: 350 VLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACD 406
           +   M   N       +A  +       + D A  L+ ++ R     +   +S  +    
Sbjct: 240 IYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLC 299

Query: 407 TMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIE 465
              K E+A  +F +M+   + PD+ TY +L   F       +   +F ++ S   +    
Sbjct: 300 HATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRS---VGCSP 356

Query: 466 MDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQES 525
             +    + H+++  K + +A        ++     D+       TY  ++  L +A   
Sbjct: 357 TVVTYTALIHAYLKAKQVPQA-------NDIFHRMVDAGCRPNDVTYGALVDGLCKAGNI 409

Query: 526 HRAMEIFKQMKTCG----------------IPPNAATYNIMIDCCSIIRCFKSASALVSM 569
            +A E++ ++                    + PN  TY  ++D          A  L+  
Sbjct: 410 SKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDA 469

Query: 570 MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
           M+  G  P  + Y ALI      G  D A  +   ++  G    V  Y +++ +  + GR
Sbjct: 470 MLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGR 529

Query: 630 IDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
           +D+   ++ QM ++   P+  T   +  G    G    A++ L ++
Sbjct: 530 LDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLM 575



 Score = 56.2 bits (134), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 77/317 (24%), Positives = 132/317 (41%), Gaps = 32/317 (10%)

Query: 328 SHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLD 387
           +H   G + A   D      M  L  M+ N+  P   T  TL     K  +L   + +++
Sbjct: 111 THMISGLMEASYFDEA----MSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIIN 166

Query: 388 QI-SRCTNPKP--FSAFL-AACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLF-SLFGN 441
            + +   NP P  F++ + + C+  D    A K+  +M      P    Y +   S+ G 
Sbjct: 167 MMMTEGCNPNPSLFNSLVHSYCNEKDYA-YAYKLLNRMTTCGCPPGYVVYNIFIGSICGQ 225

Query: 442 VNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEG-------MIR 494
              P  +      +D A++I     +M   N   + +++ N  + L   G       +I+
Sbjct: 226 EKLPSPD-----LLDLAEKIYG---EMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIK 277

Query: 495 ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCC 554
           E+++       P  T TY+ V+  L  A +  +A  +F++MK  G+ P+  TY I+ID  
Sbjct: 278 EMMR---KGFVP-DTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSF 333

Query: 555 SIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGI-PHD 613
                 + A  L   M   G  P  +TYTALI   L      +A ++   +   G  P+D
Sbjct: 334 CKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPND 393

Query: 614 VLLYNTILKKACEKGRI 630
           V  Y  ++   C+ G I
Sbjct: 394 V-TYGALVDGLCKAGNI 409



 Score = 41.6 bits (96), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 72/169 (42%), Gaps = 14/169 (8%)

Query: 502 DSKTPL-------GTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCC 554
           DS+ PL          TYN ++  L  A +      + K+M   G   +  T    + C 
Sbjct: 26  DSEDPLKDFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFT----VGCF 81

Query: 555 SIIRCFKS--ASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPH 612
           +   C +   A AL  M+ R+ F   T+  T +I  L++   FDEA++ L  +       
Sbjct: 82  AHALCKEGRWADAL-DMIEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIP 140

Query: 613 DVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVN 661
           +V+ Y T+L    +K ++   + II  M      P+PS  + +   Y N
Sbjct: 141 NVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCN 189


>gi|115482788|ref|NP_001064987.1| Os10g0501700 [Oryza sativa Japonica Group]
 gi|22165069|gb|AAM93686.1| putative leaf protein [Oryza sativa Japonica Group]
 gi|31432904|gb|AAP54480.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
 gi|113639596|dbj|BAF26901.1| Os10g0501700 [Oryza sativa Japonica Group]
 gi|125575306|gb|EAZ16590.1| hypothetical protein OsJ_32064 [Oryza sativa Japonica Group]
          Length = 454

 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 85/355 (23%), Positives = 143/355 (40%), Gaps = 48/355 (13%)

Query: 324 LQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDS-------------TIATLS 370
           + P + TY+  I A+   + +   MEVL +M   N    +S              I    
Sbjct: 42  VSPDAVTYNSIIAALSKAQAMDRAMEVLTVMVMPNCFTYNSIMHGYCSSGQSEKAIGIFR 101

Query: 371 VECSKALELDLA--EALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLRP 427
             CS  +E D+    +L+D +  C N K        C        A KIF  M ++ L+P
Sbjct: 102 KMCSDGIEPDVVTYNSLMDYL--CKNGK--------C------TEARKIFDSMVKRGLKP 145

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL 487
           DI TY  L   + +  A  E  ++ +              M +N +Q  H     L+ A 
Sbjct: 146 DITTYGTLLHGYASKGALVEMHDLLAL-------------MVQNGMQLDHHVFNILICAY 192

Query: 488 GAEGMIRELIQYFCDSKTPLGTPT---YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNA 544
             +  + E++  F   +    TP    Y TV+  L +      AM  F+QM   G+ PN 
Sbjct: 193 TKQEKVDEVVLVFSKMRQQGLTPNAVNYRTVIDGLCKLGRLDDAMLNFEQMIDKGLTPNV 252

Query: 545 ATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDL 604
             Y  +I        ++ A  L+  ++  G  P  + +  ++  L   G   E+  L DL
Sbjct: 253 VVYTSLIHALCTYDKWEKAEELIFEILDQGINPNIVFFNTILDSLCKEGRVIESKKLFDL 312

Query: 605 VSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
           +   G+  DV+ Y+T++   C  G++D    ++  M    ++PD  T   + +GY
Sbjct: 313 LGHIGVNPDVITYSTLIDGYCLAGKMDGAMKLLTGMVSVGLKPDSVTYSTLINGY 367



 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 75/351 (21%), Positives = 142/351 (40%), Gaps = 18/351 (5%)

Query: 326 PSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEAL 385
           P   +Y+  I  +  +  +         M    + P   T  ++    SKA  +D A  +
Sbjct: 9   PDVVSYNTIIDGLFKEGDVDKAYITYHEMLDRRVSPDAVTYNSIIAALSKAQAMDRAMEV 68

Query: 386 LDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNA 444
           L  +    N   +++ +    +  + E+AI IF KM    + PD+ TY  L         
Sbjct: 69  L-TVMVMPNCFTYNSIMHGYCSSGQSEKAIGIFRKMCSDGIEPDVVTYNSLMDYLCKNGK 127

Query: 445 PYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRE---LIQYFC 501
             E   +F               M +  ++    +   LL    ++G + E   L+    
Sbjct: 128 CTEARKIFDS-------------MVKRGLKPDITTYGTLLHGYASKGALVEMHDLLALMV 174

Query: 502 DSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFK 561
            +   L    +N ++ +  + ++    + +F +M+  G+ PNA  Y  +ID    +    
Sbjct: 175 QNGMQLDHHVFNILICAYTKQEKVDEVVLVFSKMRQQGLTPNAVNYRTVIDGLCKLGRLD 234

Query: 562 SASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTIL 621
            A      M+  G  P  + YT+LI  L  Y  +++A  L+  +  +GI  +++ +NTIL
Sbjct: 235 DAMLNFEQMIDKGLTPNVVVYTSLIHALCTYDKWEKAEELIFEILDQGINPNIVFFNTIL 294

Query: 622 KKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEAL 672
              C++GR+   + + + +    V PD  T   +  GY   G  + AM+ L
Sbjct: 295 DSLCKEGRVIESKKLFDLLGHIGVNPDVITYSTLIDGYCLAGKMDGAMKLL 345



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 78/368 (21%), Positives = 153/368 (41%), Gaps = 16/368 (4%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           ++++ ++H    +  S  A  +  +M S G++P   TY+  +  +  +       ++   
Sbjct: 78  FTYNSIMHGYCSSGQSEKAIGIFRKMCSDGIEPDVVTYNSLMDYLCKNGKCTEARKIFDS 137

Query: 354 MQQNNLKPQDSTIATL-SVECSKALELDLAE--ALLDQISRCTNPKPFSAFLAACDTMDK 410
           M +  LKP  +T  TL     SK   +++ +  AL+ Q     +   F+  + A    +K
Sbjct: 138 MVKRGLKPDITTYGTLLHGYASKGALVEMHDLLALMVQNGMQLDHHVFNILICAYTKQEK 197

Query: 411 PERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQ-VDSAKRINAIEMDM 468
            +  + +F+KMRQ+ L P+   Y  +      +    +    F Q +D     N +    
Sbjct: 198 VDEVVLVFSKMRQQGLTPNAVNYRTVIDGLCKLGRLDDAMLNFEQMIDKGLTPNVV---- 253

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRA 528
              ++ H+  +     KA        ELI    D         +NT+L SL +      +
Sbjct: 254 VYTSLIHALCTYDKWEKA-------EELIFEILDQGINPNIVFFNTILDSLCKEGRVIES 306

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
            ++F  +   G+ P+  TY+ +ID   +      A  L++ MV  G  P ++TY+ LI  
Sbjct: 307 KKLFDLLGHIGVNPDVITYSTLIDGYCLAGKMDGAMKLLTGMVSVGLKPDSVTYSTLING 366

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
                  ++AL L   +   G+  D++ YN IL       R    + +  ++ ++  Q +
Sbjct: 367 YCKINRMEDALALFKEMESNGVNPDIITYNIILHGLFRTRRTAAAKELYARITESGTQLE 426

Query: 649 PSTCHFVF 656
            ST + + 
Sbjct: 427 LSTYNIIL 434



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 78/162 (48%), Gaps = 4/162 (2%)

Query: 502 DSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFK 561
           D + P    +YNT++  L +  +  +A   + +M    + P+A TYN +I   S  +   
Sbjct: 4   DGRCPPDVVSYNTIIDGLFKEGDVDKAYITYHEMLDRRVSPDAVTYNSIIAALSKAQAMD 63

Query: 562 SASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTIL 621
            A  ++++MV     P   TY +++      G  ++A+ +   +  +GI  DV+ YN+++
Sbjct: 64  RAMEVLTVMVM----PNCFTYNSIMHGYCSSGQSEKAIGIFRKMCSDGIEPDVVTYNSLM 119

Query: 622 KKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
              C+ G+      I + M +  ++PD +T   +  GY + G
Sbjct: 120 DYLCKNGKCTEARKIFDSMVKRGLKPDITTYGTLLHGYASKG 161



 Score = 41.6 bits (96), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 74/388 (19%), Positives = 152/388 (39%), Gaps = 36/388 (9%)

Query: 111 RMMEEKEIGLNNKCYLL--MMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGAC 168
           R ME   + +   C+    +M   C  G  E+A  +   +    GI P +  YNS +   
Sbjct: 64  RAMEVLTVMVMPNCFTYNSIMHGYCSSGQSEKAIGIFRKMCSD-GIEPDVVTYNSLMDYL 122

Query: 169 AKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK------H 222
            K      A    D M  R +  +  TY  LL     +  L  +H++    ++      H
Sbjct: 123 CKNGKCTEARKIFDSMVKRGLKPDITTYGTLLHGYASKGALVEMHDLLALMVQNGMQLDH 182

Query: 223 YSLSIF--------SLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRS 274
           +  +I          + + V  F+++R        + +   +  + KL       GRL  
Sbjct: 183 HVFNILICAYTKQEKVDEVVLVFSKMRQQGLTPNAVNYRTVIDGLCKL-------GRLDD 235

Query: 275 SRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGF 334
           + L+    ++      V+   ++ +IHA         AE+L+ ++   G+ P+   ++  
Sbjct: 236 AMLNFEQMIDKGLTPNVV--VYTSLIHALCTYDKWEKAEELIFEILDQGINPNIVFFNTI 293

Query: 335 IRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALL-DQISRCT 393
           + ++  +  +    ++  ++    + P   T +TL      A ++D A  LL   +S   
Sbjct: 294 LDSLCKEGRVIESKKLFDLLGHIGVNPDVITYSTLIDGYCLAGKMDGAMKLLTGMVSVGL 353

Query: 394 NPKP--FSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGN 450
            P    +S  +     +++ E A+ +F +M    + PDI TY ++               
Sbjct: 354 KPDSVTYSTLINGYCKINRMEDALALFKEMESNGVNPDIITYNIILHGLFRTRRTAAAKE 413

Query: 451 MFSQV-DSAKRI-----NAIEMDMARNN 472
           +++++ +S  ++     N I MD A+ N
Sbjct: 414 LYARITESGTQLELSTYNIILMDFAKTN 441


>gi|356565780|ref|XP_003551115.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g25630-like [Glycine max]
          Length = 622

 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/360 (21%), Positives = 157/360 (43%), Gaps = 21/360 (5%)

Query: 324 LQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAE 383
           ++P S  ++  + A      + +  +V++ M+++ LKP   T  TL      A + D + 
Sbjct: 196 MKPDSRFFNALVNAFAEFGNIEDAKKVVQKMKESGLKPSACTYNTLIKGYGIAGKPDESI 255

Query: 384 ALLDQISRCTNPKP----FSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSL 438
            LLD +S   N KP     +  + A   M+    A  +  KM    ++PD+ +       
Sbjct: 256 KLLDLMSIEGNVKPNLKTCNMLIRALCKMEHTSEAWNVVYKMTTSGMQPDVVS------- 308

Query: 439 FGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQ 498
           F  V   Y +     QV+      A+ ++M RN ++ +  +   ++     EG +RE ++
Sbjct: 309 FNTVAISYAQNGKTVQVE------AMILEMRRNGLKPNDRTCTIIISGYCREGKVREALR 362

Query: 499 YFCDSKTPLGTPTY---NTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCS 555
           +    K     P     N++++  V+  +     E+   M+   I P+  TY+ +++  S
Sbjct: 363 FVYRIKDLGLQPNLIILNSLVNGFVDTMDRDGVNEVLNLMEEFYIRPDVITYSTIMNAWS 422

Query: 556 IIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVL 615
                +    + + M++ G  P    Y+ L K  +   + ++A  LL +++  G+  +V+
Sbjct: 423 QAGFLEKCKEIYNNMLKSGVKPDGHAYSILAKGYVRAQEMEKAEELLTVMTKSGVQPNVV 482

Query: 616 LYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
           ++ T++   C  GR+D    + ++M +  V P+  T   +  GY        A   LQ++
Sbjct: 483 IFTTVMSGWCSVGRMDNAMRVFDKMGEFGVSPNLKTFETLIWGYAEAKQPWKAEGMLQIM 542



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 79/375 (21%), Positives = 145/375 (38%), Gaps = 51/375 (13%)

Query: 309 SGLAEQLMLQMQSL---GLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDST 365
           SG  ++ ++  Q+L   G QPS  TY   + A+ + +  +    ++ ++++  +KP DS 
Sbjct: 143 SGKPQEAIVIFQNLIEGGHQPSLATYTTLLNALTTQKYFKPIHSIVSLVEEKQMKP-DSR 201

Query: 366 IATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK- 424
                                           F+A + A       E A K+  KM++  
Sbjct: 202 F-------------------------------FNALVNAFAEFGNIEDAKKVVQKMKESG 230

Query: 425 LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLL 484
           L+P   TY  L   +G    P E             I  +++     N++ +  +   L+
Sbjct: 231 LKPSACTYNTLIKGYGIAGKPDES------------IKLLDLMSIEGNVKPNLKTCNMLI 278

Query: 485 KALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIP 541
           +AL       E         T    P   ++NTV  S  +  ++ +   +  +M+  G+ 
Sbjct: 279 RALCKMEHTSEAWNVVYKMTTSGMQPDVVSFNTVAISYAQNGKTVQVEAMILEMRRNGLK 338

Query: 542 PNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNL 601
           PN  T  I+I         + A   V  +   G  P  +   +L+   +D  D D    +
Sbjct: 339 PNDRTCTIIISGYCREGKVREALRFVYRIKDLGLQPNLIILNSLVNGFVDTMDRDGVNEV 398

Query: 602 LDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVN 661
           L+L+    I  DV+ Y+TI+    + G ++  + I   M ++ V+PD      +  GYV 
Sbjct: 399 LNLMEEFYIRPDVITYSTIMNAWSQAGFLEKCKEIYNNMLKSGVKPDGHAYSILAKGYVR 458

Query: 662 CGFHNSAMEALQVLS 676
                 A E L V++
Sbjct: 459 AQEMEKAEELLTVMT 473



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/220 (21%), Positives = 84/220 (38%), Gaps = 71/220 (32%)

Query: 515 VLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSM----- 569
           V++ L+++ +   A+ IF+ +   G  P+ ATY  +++  +  + FK   ++VS+     
Sbjct: 136 VMNILIKSGKPQEAIVIFQNLIEGGHQPSLATYTTLLNALTTQKYFKPIHSIVSLVEEKQ 195

Query: 570 ------------------------------MVRDGFYPQTMTYTALIKILLDYGDFDEAL 599
                                         M   G  P   TY  LIK     G  DE++
Sbjct: 196 MKPDSRFFNALVNAFAEFGNIEDAKKVVQKMKESGLKPSACTYNTLIKGYGIAGKPDESI 255

Query: 600 NLLDLVSLE------------------------------------GIPHDVLLYNTILKK 623
            LLDL+S+E                                    G+  DV+ +NT+   
Sbjct: 256 KLLDLMSIEGNVKPNLKTCNMLIRALCKMEHTSEAWNVVYKMTTSGMQPDVVSFNTVAIS 315

Query: 624 ACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
             + G+   +E +I +M +N ++P+  TC  + SGY   G
Sbjct: 316 YAQNGKTVQVEAMILEMRRNGLKPNDRTCTIIISGYCREG 355


>gi|42408237|dbj|BAD09394.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|215678545|dbj|BAG92200.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 624

 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 92/439 (20%), Positives = 184/439 (41%), Gaps = 37/439 (8%)

Query: 273 RSSRLDIPIPLNALPVMKVLRWS---FSDVIHA-CGRTQNSGLAEQLMLQMQSLGLQPSS 328
           R  RLD+        +   LR S   FS ++   C R + S   + ++ +M  LG +P  
Sbjct: 111 RLGRLDLAFATVGRVITTGLRMSPILFSPLLKGLCDRRRTSDAMDIVLRRMPELGCKPDL 170

Query: 329 HTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLK-PQDSTIATLSVE-CSKALELDLAEALL 386
            +Y   ++ +  D+  +  +++L IM  +  + P D    T  +    +  +LD A +L 
Sbjct: 171 FSYTILLKGLCDDKTSQQALDLLHIMADHKGRCPLDVVAYTTVINGLLREGQLDKAYSLF 230

Query: 387 DQ-ISRCTNPK--PFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNV 442
           D  + R  +P    +S+ ++A       ++A ++F +M +  + PD   Y  L   + + 
Sbjct: 231 DAMLDRGPSPDVVTYSSIISALSKTQAMDKATQVFTRMVKNGVMPDCIMYTSLVHGYCSS 290

Query: 443 NAPYEEGNMFSQV--------------------DSAKRINAIEM--DMARNNIQHSHISM 480
             P E   +F ++                     + K   A ++   + +   +    + 
Sbjct: 291 GKPKEAIGIFKKMCRHGVEPDVVTYTALMDYLCKNGKSTEARKIFDSLVKRGHKPDSTTY 350

Query: 481 KNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKT 537
             LL     EG + E   L+         LG   +N ++ +  +  +   A+ +F  M+ 
Sbjct: 351 GTLLHGYATEGALVEMHDLLDLMMKKGMQLGHHIFNMIMGAYAKHNKVDEALLVFSNMRQ 410

Query: 538 CGIPPNAATYNIMIDC-CSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFD 596
            G+ P+   Y  ++D  C+  R   + S   S+   +G  P  + +T LI  L     +D
Sbjct: 411 QGLNPDIVNYGTVLDILCTAGRVDDALSQFNSLK-SEGLAPNIVVFTTLIHGLCTCDKWD 469

Query: 597 EALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVF 656
           +   L   +   GI  D + +N I+   C+KGR+   + + + M +  ++P+ +T + + 
Sbjct: 470 KVEELAFEMIDRGICLDTIFFNAIMGNLCKKGRVIEAKNLFDLMVRIGIEPNTNTYNTLI 529

Query: 657 SGYVNCGFHNSAMEALQVL 675
            GY   G  + AM+ L V+
Sbjct: 530 DGYCLDGKMDEAMKLLGVM 548



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 80/377 (21%), Positives = 138/377 (36%), Gaps = 55/377 (14%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           ++S +I A  +TQ    A Q+  +M   G+ P    Y   +    S    +  + + K M
Sbjct: 244 TYSSIISALSKTQAMDKATQVFTRMVKNGVMPDCIMYTSLVHGYCSSGKPKEAIGIFKKM 303

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPKP---------------- 397
            ++ ++P   T   L     K  +   A  + D  + R   P                  
Sbjct: 304 CRHGVEPDVVTYTALMDYLCKNGKSTEARKIFDSLVKRGHKPDSTTYGTLLHGYATEGAL 363

Query: 398 ---------------------FSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELL 435
                                F+  + A    +K + A+ +F+ MRQ+ L PDI  Y  +
Sbjct: 364 VEMHDLLDLMMKKGMQLGHHIFNMIMGAYAKHNKVDEALLVFSNMRQQGLNPDIVNYGTV 423

Query: 436 FSLF---GNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGM 492
             +    G V+      +  SQ +S K        +    + H   +     K       
Sbjct: 424 LDILCTAGRVD------DALSQFNSLKSEGLAPNIVVFTTLIHGLCTCDKWDK------- 470

Query: 493 IRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID 552
           + EL     D    L T  +N ++ +L +      A  +F  M   GI PN  TYN +ID
Sbjct: 471 VEELAFEMIDRGICLDTIFFNAIMGNLCKKGRVIEAKNLFDLMVRIGIEPNTNTYNTLID 530

Query: 553 CCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPH 612
              +      A  L+ +MV +G  P  +TY  +I      G  ++ L LL  +  +G+  
Sbjct: 531 GYCLDGKMDEAMKLLGVMVFNGVKPSDVTYNTIINGYSQNGRIEDGLTLLREMDGKGVNP 590

Query: 613 DVLLYNTILKKACEKGR 629
            ++ Y  +L+   + GR
Sbjct: 591 GIVTYEMLLQGLFQAGR 607



 Score = 41.6 bits (96), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 63/171 (36%), Gaps = 41/171 (23%)

Query: 528 AMEIFKQMKTCGI---PPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFY-------- 576
           A+ +F +M   G     PN ATY I+I CC  +     A A V  ++  G          
Sbjct: 80  AISLFNRMPRAGATSAAPNIATYGIVIGCCRRLGRLDLAFATVGRVITTGLRMSPILFSP 139

Query: 577 ----------------------------PQTMTYTALIKILLDYGDFDEALNLLDLVSLE 608
                                       P   +YT L+K L D     +AL+LL +++  
Sbjct: 140 LLKGLCDRRRTSDAMDIVLRRMPELGCKPDLFSYTILLKGLCDDKTSQQALDLLHIMADH 199

Query: 609 G--IPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFS 657
               P DV+ Y T++     +G++D    + + M      PD  T   + S
Sbjct: 200 KGRCPLDVVAYTTVINGLLREGQLDKAYSLFDAMLDRGPSPDVVTYSSIIS 250


>gi|413948663|gb|AFW81312.1| hypothetical protein ZEAMMB73_082399 [Zea mays]
          Length = 798

 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 93/423 (21%), Positives = 176/423 (41%), Gaps = 36/423 (8%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLG---LQPSSHTYDGFIRAIVSDRGLRNGMEV 350
           +S++ +I      + S  A +L+L M + G     P+  +Y   I     +  +     +
Sbjct: 166 FSYNALIKGLCVEKKSQEALELLLHMTADGGYNCSPNVVSYSTIIDGFFKEGEVDKAYFL 225

Query: 351 LKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI---SRCTNPKPFSAFLAACDT 407
              M      P   T ++L     KA  ++ AEA+L  +       N + ++  +    +
Sbjct: 226 FDEMIGQGFPPDVVTYSSLIDGLCKAQAMNKAEAILQHMFDKGVMPNTRTYNIMIRGYCS 285

Query: 408 MDKPERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMF-SQVDSAKRINA-- 463
           + + E A+++  KM    L+PD+ TY LL   +  +    E  ++F S V   ++ N+  
Sbjct: 286 LGQLEEAVRLLKKMSGSGLQPDVVTYILLIQYYCKIGRCAEARSVFDSMVRKGQKPNSTI 345

Query: 464 --------------IEMD-----MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSK 504
                         I++      M R+ I   H +   L+ A    G + + +  F + +
Sbjct: 346 YHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMR 405

Query: 505 TPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFK 561
                P   +Y+TV+H L +      A+  F QM + G+ PN  ++  +I     I  +K
Sbjct: 406 QNGLRPDVVSYSTVIHILCKIGRVEDAVYHFNQMVSEGLSPNIISFTSLIHGLCSIGEWK 465

Query: 562 SASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTIL 621
               L   M+  G +P  +    ++  L   G   EA +  D+V   G+  +V+ YNT++
Sbjct: 466 KVEELAFEMINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPNVVSYNTLI 525

Query: 622 KKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLC 681
              C  G++D      ++M    ++PD  T + + +GY    F N  +E    L   M  
Sbjct: 526 DGYCFVGKMDESIKQFDRMVSIGLRPDSWTYNALLNGY----FKNGRVEDALALYREMFR 581

Query: 682 EEV 684
           ++V
Sbjct: 582 KDV 584



 Score = 82.4 bits (202), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 121/531 (22%), Positives = 205/531 (38%), Gaps = 63/531 (11%)

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
           M +K +  N + Y +M++  C  G LEEA  L+  +    G+ P +  Y   +    K+ 
Sbjct: 264 MFDKGVMPNTRTYNIMIRGYCSLGQLEEAVRLLKKMSGS-GLQPDVVTYILLIQYYCKIG 322

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK------HYSLS 226
               A    D M  +    N   Y  LL     +  L  V ++ +  I+      H + +
Sbjct: 323 RCAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFN 382

Query: 227 IFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNAL 286
           I      + ++ +   +  A      M                 R    R D+       
Sbjct: 383 IL-----ICAYAKHGAVDKAMTAFTEM-----------------RQNGLRPDV------- 413

Query: 287 PVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRN 346
                   S+S VIH   +      A     QM S GL P+  ++   I  + S    + 
Sbjct: 414 -------VSYSTVIHILCKIGRVEDAVYHFNQMVSEGLSPNIISFTSLIHGLCSIGEWKK 466

Query: 347 GMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLD---QISRCTNPKPFSAFLA 403
             E+   M    + P    + T+     K   +  A+   D    I    N   ++  + 
Sbjct: 467 VEELAFEMINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPNVVSYNTLID 526

Query: 404 ACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRIN 462
               + K + +IK F +M    LRPD  TY  L      +N  ++ G    +V+ A    
Sbjct: 527 GYCFVGKMDESIKQFDRMVSIGLRPDSWTYNAL------LNGYFKNG----RVEDAL--- 573

Query: 463 AIEMDMARNNIQHSHISMKNLLKALGAEGMI---RELIQYFCDSKTPLGTPTYNTVLHSL 519
           A+  +M R +++   I+   +L  L   G I   REL     D  T L   TYNTVL  L
Sbjct: 574 ALYREMFRKDVKFCAITSNIILHGLFQAGRIVAARELYMKMVDRGTQLRIETYNTVLGGL 633

Query: 520 VEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQT 579
            E      A+ +F+ +++     +  T+NI+I+    +     A +L S MV  G  P  
Sbjct: 634 CENSCVDEALRMFEDLRSKEFELDVWTFNIVINALLKVGRIDEAKSLFSAMVLRGPVPHV 693

Query: 580 MTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           +TY+ +IK  ++ G  +E+ +L   +   G   D  + N I+++  EKG +
Sbjct: 694 ITYSLMIKSRIEEGLLEESDDLFLSMEKNGCAADSHMLNVIIRRLLEKGDV 744



 Score = 75.9 bits (185), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 89/180 (49%), Gaps = 4/180 (2%)

Query: 511 TYNTVLHSLVEAQESHRAME-IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSM 569
           T N ++  L + + +  AM+ +F++M   G  P+  +YN +I    + +  + A  L+  
Sbjct: 131 TLNQLIKGLCDGKRTDDAMDMVFRRMPELGYTPDVFSYNALIKGLCVEKKSQEALELLLH 190

Query: 570 MVRDGFY---PQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE 626
           M  DG Y   P  ++Y+ +I      G+ D+A  L D +  +G P DV+ Y++++   C+
Sbjct: 191 MTADGGYNCSPNVVSYSTIIDGFFKEGEVDKAYFLFDEMIGQGFPPDVVTYSSLIDGLCK 250

Query: 627 KGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
              ++  E I++ M    V P+  T + +  GY + G    A+  L+ +S   L  +V T
Sbjct: 251 AQAMNKAEAILQHMFDKGVMPNTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVT 310



 Score = 69.7 bits (169), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 93/450 (20%), Positives = 171/450 (38%), Gaps = 68/450 (15%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           ++S +I    + Q    AE ++  M   G+ P++ TY+  IR   S   L   + +LK M
Sbjct: 240 TYSSLIDGLCKAQAMNKAEAILQHMFDKGVMPNTRTYNIMIRGYCSLGQLEEAVRLLKKM 299

Query: 355 QQNNLKPQ----------------------------------DSTIATLSVE--CSKALE 378
             + L+P                                   +STI  + +    +K   
Sbjct: 300 SGSGLQPDVVTYILLIQYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGAL 359

Query: 379 LDLAEALLDQISRCTNP---KPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYEL 434
           +D+ + LLD + R   P   + F+  + A       ++A+  F +MRQ  LRPD+ +Y  
Sbjct: 360 IDVRD-LLDLMIRDGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYST 418

Query: 435 LFSLFGNV----NAPYEEGNMFSQ------------------VDSAKRINAIEMDMARNN 472
           +  +   +    +A Y    M S+                  +   K++  +  +M    
Sbjct: 419 VIHILCKIGRVEDAVYHFNQMVSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRG 478

Query: 473 IQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP----TYNTVLHSLVEAQESHRA 528
           I    I M  ++  L  EG + E  Q F D    +G      +YNT++       +   +
Sbjct: 479 IHPDAIFMNTIMDNLCKEGRVVE-AQDFFDMVIHIGVKPNVVSYNTLIDGYCFVGKMDES 537

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
           ++ F +M + G+ P++ TYN +++        + A AL   M R       +T   ++  
Sbjct: 538 IKQFDRMVSIGLRPDSWTYNALLNGYFKNGRVEDALALYREMFRKDVKFCAITSNIILHG 597

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
           L   G    A  L   +   G    +  YNT+L   CE   +D    + E +   + + D
Sbjct: 598 LFQAGRIVAARELYMKMVDRGTQLRIETYNTVLGGLCENSCVDEALRMFEDLRSKEFELD 657

Query: 649 PSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678
             T + V +  +  G  + A      + +R
Sbjct: 658 VWTFNIVINALLKVGRIDEAKSLFSAMVLR 687


>gi|359486541|ref|XP_002275423.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Vitis vinifera]
          Length = 778

 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 84/433 (19%), Positives = 173/433 (39%), Gaps = 64/433 (14%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ ++    +    G A  L++ M+S GL P+ +TY+  +        L+    V+++M
Sbjct: 245 TYNTILDTLCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELM 304

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT---NPKPFSAFLAACDTMDKP 411
            QNNL P   T   L         ++ A  L D++       +   ++  +  C    K 
Sbjct: 305 TQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKI 364

Query: 412 ERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSA------------ 458
             A K+  +M +K ++P+  T+ ++   +       +  N  ++++ +            
Sbjct: 365 SEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTL 424

Query: 459 -----KRINAIE----MD-MARNNIQHSHISMKNLLKALGAEGMIRE------------- 495
                K  N  E    MD M R N++   +++  +L+ L  E  + E             
Sbjct: 425 INGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGY 484

Query: 496 ----------LIQYFCDSKTPLG---------------TPTYNTVLHSLVEAQESHRAME 530
                     ++ YF D                     T TYN ++  L +  ++ +A+ 
Sbjct: 485 FIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAIS 544

Query: 531 IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590
              ++   G+ P+  TYN ++         + A    + MV + F P   T   L++ L 
Sbjct: 545 KLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLC 604

Query: 591 DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650
             G  ++AL L +    +G   D + YNT++   C++GR+D    ++ +M + ++ PD  
Sbjct: 605 MEGVLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEKELGPDHY 664

Query: 651 TCHFVFSGYVNCG 663
           T + + +   + G
Sbjct: 665 TYNAIITALTDSG 677



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 132/288 (45%), Gaps = 20/288 (6%)

Query: 389 ISRCTNPKP--FSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAP 445
           I R T+P        + A     +P  A +IF KM++ +LRP++ T   L +    V  P
Sbjct: 127 ILRLTSPSKALLDTAIGAYVQSGQPHHAFQIFKKMKRLRLRPNLLTCNTLLNSL--VRYP 184

Query: 446 YEEGNMFSQVDSAKRINAIEMDMARN----NIQHSHISMKNLLKALGAEGMIRELIQYFC 501
                 FS+       +AI++ +  N    NI      ++N  K   A   +  + +Y C
Sbjct: 185 SSHSVSFSR---EAFNDAIKLGIVPNVNTFNIVIYGYCLENKFK--DAVEFLNVMGKYNC 239

Query: 502 DSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFK 561
                    TYNT+L +L +      A ++   MK+ G+ PN  TYNI++     +   K
Sbjct: 240 SPDNV----TYNTILDTLCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLK 295

Query: 562 SASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLD-LVSLEGIPHDVLLYNTI 620
            A+ ++ +M ++   P   TY  LI  L + G  +EA  L D + +L+ +P DV+ YNT+
Sbjct: 296 EAANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLP-DVVSYNTL 354

Query: 621 LKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSA 668
           +    E  +I     ++E+M +  V+P+  T + +   Y   G  + A
Sbjct: 355 INGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDA 402



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 81/385 (21%), Positives = 160/385 (41%), Gaps = 36/385 (9%)

Query: 322 LGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIAT-LSVECSKALELD 380
           LG+ P+ +T++  I     +   ++ +E L +M + N  P + T  T L   C K    D
Sbjct: 202 LGIVPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTILDTLCKKGRLGD 261

Query: 381 LAEALLDQISR--CTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFS 437
             + L+D  SR    N   ++  +     M   + A  +   M Q  L PD+ TY +L +
Sbjct: 262 ARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLIN 321

Query: 438 LFGNVNAPYEEGNMFSQVDSAKRI-NAIEMDMARNN-IQHSHISMK-NLLKALGAEGMIR 494
              N     E   +  ++++ K + + +  +   N  ++ S IS    LL+ +  +G+  
Sbjct: 322 GLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKP 381

Query: 495 E------LIQYFC----------------DSKTPLGTPTYNTVLHSLVEAQESHRAMEIF 532
                  +++++C                +S       TYNT+++   +A     A    
Sbjct: 382 NAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTM 441

Query: 533 KQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDY 592
            +M    +  ++ T N ++      +  + A  L+S   + G++   ++Y  LI      
Sbjct: 442 DEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKD 501

Query: 593 GDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTC 652
           G+ D AL L D +  + I    + YN I+   C+ G+ +     + ++ ++ + PD +T 
Sbjct: 502 GNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTY 561

Query: 653 HFVFSGYVNCG-------FHNSAME 670
           + +  GY   G       FHN  +E
Sbjct: 562 NTILHGYCREGDVEKAFQFHNKMVE 586



 Score = 70.9 bits (172), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 110/513 (21%), Positives = 208/513 (40%), Gaps = 31/513 (6%)

Query: 151 RYGIYPILPVYNSFL-GACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNL 209
           + GI P +  +N  + G C + +    A   L++M       + VTY  +L     +  L
Sbjct: 201 KLGIVPNVNTFNIVIYGYCLE-NKFKDAVEFLNVMGKYNCSPDNVTYNTILDTLCKKGRL 259

Query: 210 SAVHEIWEDYIKHYSL--SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYI-NR 266
               ++  D +K   L  +  +    V+ + ++  LK A   ++ M    ++  ++  N 
Sbjct: 260 GDARDLLMD-MKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNM 318

Query: 267 TSEGRLRSSRLDIPIPL-NALPVMKVLR--WSFSDVIHACGRTQNSGLAEQLMLQMQSLG 323
              G     R++    L + +  +K+L    S++ +I+ C        A +L+ +M   G
Sbjct: 319 LINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKG 378

Query: 324 LQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAE 383
           ++P++ T++  ++    +  + +    +  M+++   P   T  TL     KA  +  A 
Sbjct: 379 VKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAF 438

Query: 384 ALLDQISRCT---NPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFG 440
             +D++ R     +    +  L       K E A K+ +  R+      R Y +    +G
Sbjct: 439 RTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARK------RGYFIDEVSYG 492

Query: 441 NVNAPY-EEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL----GAEGMIRE 495
            +   Y ++GN    VD A ++     +M    I  S ++   ++  L      E  I +
Sbjct: 493 TLIVGYFKDGN----VDRALKLWD---EMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISK 545

Query: 496 LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCS 555
           L +       P  T TYNT+LH      +  +A +   +M      P+  T NI++    
Sbjct: 546 LNELLESGLLPDET-TYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLC 604

Query: 556 IIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVL 615
           +    + A  L +  V  G    T+TY  LI  L   G  D+A NLL  +  + +  D  
Sbjct: 605 MEGVLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEKELGPDHY 664

Query: 616 LYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
            YN I+    + GRI   E  + +M +    PD
Sbjct: 665 TYNAIITALTDSGRIREAEEFMSKMLEKGNLPD 697



 Score = 67.0 bits (162), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 85/179 (47%), Gaps = 7/179 (3%)

Query: 513 NTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSM--- 569
           +T + + V++ + H A +IFK+MK   + PN  T N +++  S++R   S S   S    
Sbjct: 139 DTAIGAYVQSGQPHHAFQIFKKMKRLRLRPNLLTCNTLLN--SLVRYPSSHSVSFSREAF 196

Query: 570 --MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEK 627
              ++ G  P   T+  +I        F +A+  L+++       D + YNTIL   C+K
Sbjct: 197 NDAIKLGIVPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTILDTLCKK 256

Query: 628 GRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           GR+     ++  M    + P+ +T + +  GY   G+   A   +++++   L  +V T
Sbjct: 257 GRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWT 315



 Score = 44.7 bits (104), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 82/436 (18%), Positives = 161/436 (36%), Gaps = 60/436 (13%)

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
           M EK +  N   + +M++  CK G +++ASN I  + E  G  P    YN+ +    K  
Sbjct: 374 MSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKM-EESGFSPDCVTYNTLINGYCKAG 432

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRK 232
           +M  A   +D M  + +  + VT   +L+    +K L   ++                  
Sbjct: 433 NMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYK------------------ 474

Query: 233 FVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVL 292
                     L S+     + +     G L +    +G       ++   L     MK  
Sbjct: 475 ----------LLSSARKRGYFIDEVSYGTLIVGYFKDG-------NVDRALKLWDEMKEK 517

Query: 293 RWSFSDVIHAC--GRTQNSGLAEQLMLQMQSL---GLQPSSHTYDGFIRAIVSDRGLRNG 347
               S V + C  G     G  EQ + ++  L   GL P   TY+  +     +  +   
Sbjct: 518 EIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKA 577

Query: 348 MEVLKIMQQNNLKPQDST----IATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLA 403
            +    M +N+ KP   T    +  L +E      L L    + +  +  +   ++  + 
Sbjct: 578 FQFHNKMVENSFKPDVFTCNILLRGLCMEGVLEKALKLFNTWVSK-GKAIDTVTYNTLIT 636

Query: 404 ACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGN----------VNAPYEEGNMF 452
           +     + + A  + ++M +K L PD  TY  + +   +          ++   E+GN+ 
Sbjct: 637 SLCKEGRLDDAFNLLSEMEEKELGPDHYTYNAIITALTDSGRIREAEEFMSKMLEKGNLP 696

Query: 453 SQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSK---TPLGT 509
            QV    +   +           S ++    +K L  EG  ++ ++ F +SK     +  
Sbjct: 697 DQVLQLDKNETVVTSETSEESDSSSVAYSEWIKELCTEGKYKDAMRIFGESKQKGITVDK 756

Query: 510 PTYNTVLHSLVEAQES 525
            TY  ++  L++ ++S
Sbjct: 757 STYINLMDGLIKRRKS 772



 Score = 41.6 bits (96), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 117/580 (20%), Positives = 221/580 (38%), Gaps = 70/580 (12%)

Query: 30  VANKLELSRTLTTTMGLNEESISKATQMQIVDALCR-GERSRASHLLLNLGHAHHSLGAD 88
           + NK + +      MG    S    T   I+D LC+ G    A  LL+++  +   L   
Sbjct: 220 LENKFKDAVEFLNVMGKYNCSPDNVTYNTILDTLCKKGRLGDARDLLMDM-KSRGLLPNR 278

Query: 89  DFFHIL--NYCARS--PDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNL 144
           + ++IL   YC      +   V+E   +M +  +  +   Y +++  LC  G +EEA  L
Sbjct: 279 NTYNILVYGYCKMGWLKEAANVIE---LMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKL 335

Query: 145 IYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAV 204
              + E   + P +  YN+ +  C +   +  A   L+ M  + V  N VT+  ++K   
Sbjct: 336 RDEM-ENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYC 394

Query: 205 WQKNL-SAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAM-MGKL 262
            +  +  A + I +     +S    +    +  + +  ++  A+ T+  M    M M  +
Sbjct: 395 KEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSV 454

Query: 263 YINRTSEGRLRSSRLDIPIPLNALPVMK---VLRWSFSDVIHACGRTQNSGLAEQLMLQM 319
            +N       R  +L+    L +    +   +   S+  +I    +  N   A +L  +M
Sbjct: 455 TLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEM 514

Query: 320 QSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIAT-LSVECSKALE 378
           +   + PS+ TY+  I  +         +  L  + ++ L P ++T  T L   C    E
Sbjct: 515 KEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCR---E 571

Query: 379 LDLAEALLDQISRCTNPKPFSAFLAACDTMDKP-------ERAIKIFAKMRQKLRP-DIR 430
            D+ +A   Q         F   +  C+ + +        E+A+K+F     K +  D  
Sbjct: 572 GDVEKAF--QFHNKMVENSFKPDVFTCNILLRGLCMEGVLEKALKLFNTWVSKGKAIDTV 629

Query: 431 TYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAE 490
           TY  L      + +  +EG    ++D A  + +   +M    +   H +   ++ AL   
Sbjct: 630 TYNTL------ITSLCKEG----RLDDAFNLLS---EMEEKELGPDHYTYNAIITALTDS 676

Query: 491 GMIRELIQYFCDSKTPLGTP--------------------------TYNTVLHSLVEAQE 524
           G IRE  ++          P                           Y+  +  L    +
Sbjct: 677 GRIREAEEFMSKMLEKGNLPDQVLQLDKNETVVTSETSEESDSSSVAYSEWIKELCTEGK 736

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSAS 564
              AM IF + K  GI  + +TY  ++D   +I+  KS S
Sbjct: 737 YKDAMRIFGESKQKGITVDKSTYINLMD--GLIKRRKSIS 774


>gi|302782654|ref|XP_002973100.1| hypothetical protein SELMODRAFT_442013 [Selaginella moellendorffii]
 gi|300158853|gb|EFJ25474.1| hypothetical protein SELMODRAFT_442013 [Selaginella moellendorffii]
          Length = 674

 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/295 (23%), Positives = 130/295 (44%), Gaps = 49/295 (16%)

Query: 378 ELDLAEALLDQIS-RCTNPK--PFSAFLAACDTMDKPERAIKIFAKMR-QKLRPDIRTYE 433
           +L+L+E L+++++ R   P    FS  +       +PE A+K F +M+ + + PD  TY 
Sbjct: 158 QLELSEKLVEEMTGRGIQPDNYTFSTLINCAKRCRQPEEALKWFERMKSEGIVPDEVTYN 217

Query: 434 LLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMI 493
            +  ++G V    E   ++ ++ S        ++   + + +  I+  N+    G    I
Sbjct: 218 SVIDMYGRVGRVNEAVELYEKLKS--------VNWKLDTVTYGAIA--NVYARAGDYQSI 267

Query: 494 RELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC 553
            +L+Q   DS +       NT++ +L +A + ++A ++F +M+T G+ P   T +I    
Sbjct: 268 IQLVQEMRDSGSSPNAVIMNTLMGTLSKAGKVNQAKKVFNEMRTSGVSPTPVTLSI---- 323

Query: 554 CSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHD 613
                       LV M  R G Y                   D+A  + + +  EG   D
Sbjct: 324 ------------LVEMYTRVGAY-------------------DQAFEVYETLKTEGWKCD 352

Query: 614 VLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSA 668
           V +YN+++K   E GR++  E I+++M +    PD  T     + Y   G  + A
Sbjct: 353 VAVYNSLMKACVEGGRVEQAEDILKEMKRAGCNPDHLTYRTAMNTYATKGMVDPA 407



 Score = 68.9 bits (167), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 78/165 (47%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           T++T+++     ++   A++ F++MK+ GI P+  TYN +ID    +     A  L   +
Sbjct: 180 TFSTLINCAKRCRQPEEALKWFERMKSEGIVPDEVTYNSVIDMYGRVGRVNEAVELYEKL 239

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
               +   T+TY A+  +    GD+   + L+  +   G   + ++ NT++    + G++
Sbjct: 240 KSVNWKLDTVTYGAIANVYARAGDYQSIIQLVQEMRDSGSSPNAVIMNTLMGTLSKAGKV 299

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
           +  + +  +M  + V P P T   +   Y   G ++ A E  + L
Sbjct: 300 NQAKKVFNEMRTSGVSPTPVTLSILVEMYTRVGAYDQAFEVYETL 344



 Score = 46.2 bits (108), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 57/131 (43%)

Query: 543 NAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL 602
           N  TYN+M+      R  + +  LV  M   G  P   T++ LI         +EAL   
Sbjct: 142 NRYTYNVMLKILRNGRQLELSEKLVEEMTGRGIQPDNYTFSTLINCAKRCRQPEEALKWF 201

Query: 603 DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNC 662
           + +  EGI  D + YN+++      GR++    + E++     + D  T   + + Y   
Sbjct: 202 ERMKSEGIVPDEVTYNSVIDMYGRVGRVNEAVELYEKLKSVNWKLDTVTYGAIANVYARA 261

Query: 663 GFHNSAMEALQ 673
           G + S ++ +Q
Sbjct: 262 GDYQSIIQLVQ 272



 Score = 43.1 bits (100), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 71/353 (20%), Positives = 140/353 (39%), Gaps = 26/353 (7%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           ++FS +I+   R +    A +   +M+S G+ P   TY+  I        +   +E+ + 
Sbjct: 179 YTFSTLINCAKRCRQPEEALKWFERMKSEGIVPDEVTYNSVIDMYGRVGRVNEAVELYEK 238

Query: 354 MQQNNLKPQDSTIATLSVECSKALE----LDLAEALLDQISRCTNPKPFSAFLAACDTMD 409
           ++  N K    T   ++   ++A +    + L + + D  S   N    +  +       
Sbjct: 239 LKSVNWKLDTVTYGAIANVYARAGDYQSIIQLVQEMRDSGS-SPNAVIMNTLMGTLSKAG 297

Query: 410 KPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
           K  +A K+F +MR   + P   T  +L  ++  V A Y++     +V    +    + D+
Sbjct: 298 KVNQAKKVFNEMRTSGVSPTPVTLSILVEMYTRVGA-YDQA---FEVYETLKTEGWKCDV 353

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQES 525
           A  N         +L+KA    G + +      + K     P   TY T +++       
Sbjct: 354 AVYN---------SLMKACVEGGRVEQAEDILKEMKRAGCNPDHLTYRTAMNTYATKGMV 404

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDG-FYPQTMTYTA 584
             A  +F ++      P+   + +MI  C +    + AS +   M+  G   P       
Sbjct: 405 DPARRMFDKVVALNGKPDTPLFTVMIRACKLAGEIEQASKIFDEMMESGCCSPDERVSGM 464

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIP-HDVLLYNTILKKACEKGRIDVIEFI 636
           L+  +    + DE L +LD +     P H+  L + I++K   + R +V E +
Sbjct: 465 LLSCMAMAKNDDERLAILDCLDKFNAPLHE--LMSAIVRKEEPRSRDEVAEMV 515


>gi|297606902|ref|NP_001059180.2| Os07g0213300 [Oryza sativa Japonica Group]
 gi|215767816|dbj|BAH00045.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255677604|dbj|BAF21094.2| Os07g0213300 [Oryza sativa Japonica Group]
          Length = 677

 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 99/506 (19%), Positives = 192/506 (37%), Gaps = 101/506 (19%)

Query: 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
           R ++++VI+ACG   N   A +L  +M   G+ P   T++  + A+ +       +   +
Sbjct: 81  RTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLVTHNIVLSALKNGAQYSKAISYFE 140

Query: 353 IMQQNNLKPQDSTIATLS------VECSKALEL-------------DLAE--------AL 385
           IM+  N+     T+  +        +C +A+EL             D+           +
Sbjct: 141 IMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDVVTYTSIMHSYCI 200

Query: 386 LDQISRCT-------------NPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRT 431
             Q+  C              N   +++ L A  +      A+ IF  +++  LRPDI +
Sbjct: 201 YGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLIKKNGLRPDIVS 260

Query: 432 YELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEG 491
           Y  L + +G    P +   +F++             M +N+ + + +S   L+ A G+ G
Sbjct: 261 YTSLLNAYGRSAQPEKAREVFNK-------------MKKNSCKPNKVSYNALIDAYGSAG 307

Query: 492 MIRELIQYF----CDSKTP----------------------------------LGTPTYN 513
           M++E +        D   P                                  L T  YN
Sbjct: 308 MLKEAVGLLHEMEKDGIQPDVVSISTLLAACGRCRQITRIETILEAARSRGIDLNTVAYN 367

Query: 514 TVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRD 573
           + + S +   +  +A+E++  M+   + P+A TYNI+I   S +  +  +      MV  
Sbjct: 368 SGIKSYLSFGDYEKALELYTSMRESNVKPDAVTYNILISGSSKLGKYTESLRFFEDMVDS 427

Query: 574 GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVI 633
                   Y++LI   +  G   EA +    +   G   DVL Y T+++     G     
Sbjct: 428 KVSSTKEVYSSLIYSYIKQGKLSEAESTFSSMKKSGCFPDVLTYTTLIQAYNAGGGWKRA 487

Query: 634 EFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSD 693
             + ++M  N + PD   C  +   +      N   E  +VL +    ++ S    ++S 
Sbjct: 488 WDLFKEMEVNGIPPDAIICSSLMEAF------NKGGEPERVLQLMEFMKKKSIPLNQKSY 541

Query: 694 FEDL---ILAEDSEAESRILQFCEDS 716
           FE +    +  D +  S ++++ + S
Sbjct: 542 FEIIASCTMIRDWKTASEMIEYLDSS 567



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 68/307 (22%), Positives = 128/307 (41%), Gaps = 26/307 (8%)

Query: 378 ELDLAEALLDQIS--RCT-NPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYEL 434
           ++D A  L  ++   RC  +   +++ + A     +   AI I   M +   P  RT   
Sbjct: 26  QVDQARGLFFEMQEWRCKPDADIYNSLIHAHSRAGQWRWAINIMEDMLRAAIPPTRT--- 82

Query: 435 LFSLFGNV-NAPYEEGNMFSQVDSAKRI--NAIEMDMARNNIQHSHISMKNLLKALGAEG 491
               + NV NA    GN    ++  K++  N +  D+  +NI         +L AL    
Sbjct: 83  ---TYNNVINACGAAGNWKKALELCKKMTENGVGPDLVTHNI---------VLSALKNGA 130

Query: 492 MIRELIQYF---CDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKT--CGIPPNAAT 546
              + I YF     +     T T N ++H LV+  +   A+E+F  M+      PP+  T
Sbjct: 131 QYSKAISYFEIMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDVVT 190

Query: 547 YNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVS 606
           Y  ++    I    ++  A+  +MV +G  P  + Y +L+      G   EAL + +L+ 
Sbjct: 191 YTSIMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLIK 250

Query: 607 LEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHN 666
             G+  D++ Y ++L       + +    +  +M +N  +P+  + + +   Y + G   
Sbjct: 251 KNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGMLK 310

Query: 667 SAMEALQ 673
            A+  L 
Sbjct: 311 EAVGLLH 317



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 88/457 (19%), Positives = 173/457 (37%), Gaps = 80/457 (17%)

Query: 90  FFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLG 149
           +  +LN   RS  P    E +  M++     N   Y  ++ A    G L+EA  L++ + 
Sbjct: 261 YTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGMLKEAVGLLHEM- 319

Query: 150 ERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNL 209
           E+ GI P +   ++ L AC +   +      L+   SR +  N V Y             
Sbjct: 320 EKDGIQPDVVSISTLLAACGRCRQITRIETILEAARSRGIDLNTVAYN------------ 367

Query: 210 SAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSE 269
                     IK Y LS     K +  +T +R+     + + + + ++   KL    T  
Sbjct: 368 --------SGIKSY-LSFGDYEKALELYTSMRESNVKPDAVTYNILISGSSKLG-KYTES 417

Query: 270 GRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSH 329
            R     +D  +           +  +S +I++  +      AE     M+  G  P   
Sbjct: 418 LRFFEDMVDSKV--------SSTKEVYSSLIYSYIKQGKLSEAESTFSSMKKSGCFPDVL 469

Query: 330 TYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI 389
           TY   I+A  +  G +   ++ K M+ N + P        ++ CS  +E           
Sbjct: 470 TYTTLIQAYNAGGGWKRAWDLFKEMEVNGIPPD-------AIICSSLME----------- 511

Query: 390 SRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRP-DIRTYELLFSLFGNVNAPYEE 448
                         A +   +PER +++   M++K  P + ++Y  + +    +      
Sbjct: 512 --------------AFNKGGEPERVLQLMEFMKKKSIPLNQKSYFEIIASCTMIRDWKTA 557

Query: 449 GNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYF---CDSKT 505
             M   +DS+  +++I +            ++ ++L  LG  G    +++ F     S +
Sbjct: 558 SEMIEYLDSS--LSSISVG-----------TLNHVLNFLGKCGKTENMMKLFYKMVTSCS 604

Query: 506 PLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPP 542
            +G  TY  VL +L+   +  + +E+ + M+  G+ P
Sbjct: 605 TVGLSTYAVVLRNLLVVGKWRKYIEVLQWMEDSGVHP 641



 Score = 39.7 bits (91), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 35/167 (20%), Positives = 65/167 (38%)

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           Y  ++       +  +A  +F +M+     P+A  YN +I   S    ++ A  ++  M+
Sbjct: 14  YGMMIRLYARHNQVDQARGLFFEMQEWRCKPDADIYNSLIHAHSRAGQWRWAINIMEDML 73

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
           R    P   TY  +I      G++ +AL L   ++  G+  D++ +N +L       +  
Sbjct: 74  RAAIPPTRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLVTHNIVLSALKNGAQYS 133

Query: 632 VIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678
                 E M    V  D  T + +    V  G    A+E    +  R
Sbjct: 134 KAISYFEIMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRER 180


>gi|168038876|ref|XP_001771925.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162676707|gb|EDQ63186.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 831

 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 86/399 (21%), Positives = 162/399 (40%), Gaps = 54/399 (13%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTY----DGFIRAIVSDRGLRNGMEVL 351
           ++++IHA  +  N   AE +M  M+  GL+ +   Y    DG++     D+ L N    L
Sbjct: 300 YNNIIHAYCKAGNMERAEAIMTAMEEQGLEATLGLYNMLMDGYVHCRAVDKCL-NVFRRL 358

Query: 352 KIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKP 411
           K   +  L P       +S  C           L++  S+                + K 
Sbjct: 359 KARTETGLSP-----TVVSYGC-----------LINLYSK----------------LGKM 386

Query: 412 ERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           ++A++I  +M  Q ++ + +TY ++   +  +             D+A   +  E DM+ 
Sbjct: 387 DKALQISNEMEDQGIKHNRKTYSMIIDGYVQLG------------DTANAFSVFE-DMSN 433

Query: 471 NNIQHSHISMKNLLKALGAEGMIR---ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHR 527
             I+   I+   L+ A    G +    EL+        P    TY  ++   ++  +   
Sbjct: 434 AGIKPDGITYNILMNAFCKNGQMNRALELLARMESGDCPPTLRTYTIIIDGFMKIGDLRM 493

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A E  + MK  G  P+AATYN+++   +       A++++  MV  G +P   +YT LI+
Sbjct: 494 AFETVRDMKMAGFRPSAATYNVIMHGLAQAGQMDRAASIIDEMVVAGVHPNERSYTTLIE 553

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
                GD   A    + +   G+  DV+ Y ++LK  C+ GR+     I  +M    V  
Sbjct: 554 GYACIGDMGLAFKYFNRIKEVGLKPDVIAYASLLKACCKAGRMQSTLAITAEMAAAGVPM 613

Query: 648 DPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           +    + +  G+   G    A + +Q +    L  ++ +
Sbjct: 614 NNYIYNILLDGWAQRGDMWEASDIMQKMRHEGLTPDIHS 652



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 68/155 (43%)

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
           + H A   F+ M+  GI PN  +Y  +I   ++ +  + A A V  M  +G  P   TY+
Sbjct: 207 DKHSARAAFESMRAAGIEPNVHSYTNLIHAYAVAQDLRGAIACVEEMEAEGVSPNAATYS 266

Query: 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
            +I      GD + A         E   H+ ++YN I+   C+ G ++  E I+  M + 
Sbjct: 267 VIISGYGRLGDVEAAERWFQRALSENWHHNDVIYNNIIHAYCKAGNMERAEAIMTAMEEQ 326

Query: 644 KVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678
            ++      + +  GYV+C   +  +   + L  R
Sbjct: 327 GLEATLGLYNMLMDGYVHCRAVDKCLNVFRRLKAR 361



 Score = 49.7 bits (117), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 94/484 (19%), Positives = 187/484 (38%), Gaps = 65/484 (13%)

Query: 121 NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLC 180
           N+  Y  ++ A CK G +E A  ++  + E  G+   L +YN  +       ++   + C
Sbjct: 296 NDVIYNNIIHAYCKAGNMERAEAIMTAM-EEQGLEATLGLYNMLMDGYVHCRAV---DKC 351

Query: 181 LDLMDSRMVGKNE-------VTYTELL----KLAVWQKNLSAVHEIWEDYIKHYSLSIFS 229
           L++   R+  + E       V+Y  L+    KL    K L   +E+ +  IKH +   +S
Sbjct: 352 LNVF-RRLKARTETGLSPTVVSYGCLINLYSKLGKMDKALQISNEMEDQGIKH-NRKTYS 409

Query: 230 LRKFVWSFTRLRDLKSAYETLQHM--VALAMMGKLY------------INRTSEGRLRSS 275
           +   +  + +L D  +A+   + M    +   G  Y            +NR  E   R  
Sbjct: 410 M--IIDGYVQLGDTANAFSVFEDMSNAGIKPDGITYNILMNAFCKNGQMNRALELLARME 467

Query: 276 RLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFI 335
             D P      P ++    +++ +I    +  +  +A + +  M+  G +PS+ TY+  +
Sbjct: 468 SGDCP------PTLR----TYTIIIDGFMKIGDLRMAFETVRDMKMAGFRPSAATYNVIM 517

Query: 336 RAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNP 395
             +     +     ++  M    + P + +  TL    +   ++ LA    ++I      
Sbjct: 518 HGLAQAGQMDRAASIIDEMVVAGVHPNERSYTTLIEGYACIGDMGLAFKYFNRIKE-VGL 576

Query: 396 KP----FSAFLAACDTMDKPERAIKIFAKMRQKLRP-DIRTYELLFSLFGNVNAPYEEGN 450
           KP    +++ L AC    + +  + I A+M     P +   Y +L   +      +E  +
Sbjct: 577 KPDVIAYASLLKACCKAGRMQSTLAITAEMAAAGVPMNNYIYNILLDGWAQRGDMWEASD 636

Query: 451 MFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP 510
           +  ++    R   +  D+      HS+ S  N     G      E I+            
Sbjct: 637 IMQKM----RHEGLTPDI------HSYTSFINACCKAGDMLKATETIEQMKQQGVQPNLQ 686

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
            Y T++H    A    +A+  + +MK+ G+ P+   Y+       I+    S +A+    
Sbjct: 687 AYTTLIHGWASASYPEKALICYDEMKSAGMIPDKPLYHC------IMTSLLSRAAVARET 740

Query: 571 VRDG 574
           V DG
Sbjct: 741 VFDG 744



 Score = 40.4 bits (93), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 1/88 (1%)

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
           M    + +NN  Y +++    + G + EAS+++  +    G+ P +  Y SF+ AC K  
Sbjct: 606 MAAAGVPMNNYIYNILLDGWAQRGDMWEASDIMQKM-RHEGLTPDIHSYTSFINACCKAG 664

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELL 200
            M+ A   ++ M  + V  N   YT L+
Sbjct: 665 DMLKATETIEQMKQQGVQPNLQAYTTLI 692


>gi|356558657|ref|XP_003547620.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g55840-like [Glycine max]
          Length = 1078

 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 141/679 (20%), Positives = 251/679 (36%), Gaps = 124/679 (18%)

Query: 111 RMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAK 170
           R MEE  +      Y  ++   CK G  + AS LI  +  + GI   +  YN F+    +
Sbjct: 199 RKMEESGVYPTAVTYNTLLNWYCKKGRYKAASQLIDCMASK-GIGVDVCTYNVFIDNLCR 257

Query: 171 LHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSL 230
                   L L  M   MV  NE+TY  L+   V +  +    +++++      +S+F+L
Sbjct: 258 DSRSAKGYLLLKRMRRNMVYPNEITYNTLISGFVREGKIEVATKVFDE------MSLFNL 311

Query: 231 RKFVWSFTRL-------RDLKSAYETLQHMVAL----------AMMGKLYIN-------- 265
                ++  L        ++  A   +  MV+           A++  LY N        
Sbjct: 312 LPNSITYNTLIAGHCTTGNIGEALRLMDVMVSHGLRPNEVTYGALLNGLYKNAEFGMVSS 371

Query: 266 ---RTSEGRLRSSRLDIPIPLNALPVMKVLR------------------WSFSDVIHACG 304
              R   G +R S +     ++ L    +L                    +FS +I+   
Sbjct: 372 ILERMRMGGVRVSHISYTAMIDGLCKNGMLEEAVQLLDDMLKVSVNPDVVTFSVLINGFF 431

Query: 305 RTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDS 364
           R      A+++M +M   GL P+   Y   I        L+  +    +M  +       
Sbjct: 432 RVGKINNAKEIMCKMYKTGLVPNGILYSTLIYNYCKMGYLKEALNAYAVMNHSGHVADHF 491

Query: 365 TIATLSVECSKALELDLAEALLDQISRCT---NPKPFSAFLAACDTMDKPERAIKIFAKM 421
           T   L     +  +L+ AE  ++ +SR     N   F   +          +A  +F KM
Sbjct: 492 TCNVLVATFCRYGKLEEAEYFMNHMSRMGLDPNSVTFDCIINGYGNSGDALKAFSVFDKM 551

Query: 422 RQKLR-PDIRTYELLFS---LFGNVN-----------APYEEGNMF------SQVDSAKR 460
                 P + TY  L     + G++N            P    N+       S   S   
Sbjct: 552 NSFGHFPSLFTYGGLLKGLCIGGHINEALKFFHRLRCIPNAVDNVIFNTKLTSTCRSGNL 611

Query: 461 INAIEM--DMARNNIQHSHISMKNLLKALGAEGMI-------RELIQYFCDSKTPLGTPT 511
            +AI +  +M  N+    + +  NL+  L  +G I        + I+    S  P     
Sbjct: 612 SDAIALINEMVTNDFLPDNFTYTNLIAGLCKKGKIVAALLLSGKAIEKGLLSPNP---AV 668

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI-------------DCCSIIR 558
           Y +++  L++   +  A+ IF++M    + P+   +N++I             D  S ++
Sbjct: 669 YTSLVDGLLKHGHARAALYIFEEMLNKDVEPDTVAFNVIIDQYSRKGKTSKVNDILSTMK 728

Query: 559 ----CFKSAS------------------ALVSMMVRDGFYPQTMTYTALIKILLDYGDFD 596
               CF  A+                   L   M+R GF P   ++ +LI        FD
Sbjct: 729 SKNLCFNLATYNILLHGYAKRHAMARCFMLYKDMIRHGFLPDKFSWHSLILGYCQSKSFD 788

Query: 597 EALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVF 656
            A+ +L  ++LEG   D   +N ++ K CE+  +     +++QM+Q  V P+  T + +F
Sbjct: 789 VAIKILRWITLEGHVIDRFTFNMLITKFCERNEMKKAFELVKQMNQFMVIPNVDTYNALF 848

Query: 657 SGYVNCGFHNSAMEALQVL 675
           +G +     + A   LQVL
Sbjct: 849 NGLIRTSDFHKAHRVLQVL 867



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/153 (32%), Positives = 76/153 (49%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           T N VL SLV+ Q+       FK M   GI P+ AT+NI+++       FK+A  L+  M
Sbjct: 142 TCNMVLGSLVKEQKVDMFWSFFKGMLAKGICPDVATFNILLNALCERGKFKNAGFLLRKM 201

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
              G YP  +TY  L+      G +  A  L+D ++ +GI  DV  YN  +   C   R 
Sbjct: 202 EESGVYPTAVTYNTLLNWYCKKGRYKAASQLIDCMASKGIGVDVCTYNVFIDNLCRDSRS 261

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
                ++++M +N V P+  T + + SG+V  G
Sbjct: 262 AKGYLLLKRMRRNMVYPNEITYNTLISGFVREG 294



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 87/415 (20%), Positives = 163/415 (39%), Gaps = 28/415 (6%)

Query: 277 LDIPIPLNAL--------PVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSS 328
           L +PI LN++        P+       F  +I  C R +  G A Q    M   GL PS 
Sbjct: 81  LQLPIGLNSVFGALMETYPICNSNPAVFDLLIRVCLRNRMVGDAVQTFYLMGFRGLNPSV 140

Query: 329 HTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ 388
           +T +  + ++V ++ +       K M    + P  +T   L     +  +   A  LL +
Sbjct: 141 YTCNMVLGSLVKEQKVDMFWSFFKGMLAKGICPDVATFNILLNALCERGKFKNAGFLLRK 200

Query: 389 ISRCT---NPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNA 444
           +           ++  L       + + A ++   M  K +  D+ TY +          
Sbjct: 201 MEESGVYPTAVTYNTLLNWYCKKGRYKAASQLIDCMASKGIGVDVCTYNVFID------- 253

Query: 445 PYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSK 504
                N+     SAK    ++  M RN +  + I+   L+     EG I    + F +  
Sbjct: 254 -----NLCRDSRSAKGYLLLK-RMRRNMVYPNEITYNTLISGFVREGKIEVATKVFDEMS 307

Query: 505 TPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFK 561
                P   TYNT++           A+ +   M + G+ PN  TY  +++       F 
Sbjct: 308 LFNLLPNSITYNTLIAGHCTTGNIGEALRLMDVMVSHGLRPNEVTYGALLNGLYKNAEFG 367

Query: 562 SASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTIL 621
             S+++  M   G     ++YTA+I  L   G  +EA+ LLD +    +  DV+ ++ ++
Sbjct: 368 MVSSILERMRMGGVRVSHISYTAMIDGLCKNGMLEEAVQLLDDMLKVSVNPDVVTFSVLI 427

Query: 622 KKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
                 G+I+  + I+ +M++  + P+      +   Y   G+   A+ A  V++
Sbjct: 428 NGFFRVGKINNAKEIMCKMYKTGLVPNGILYSTLIYNYCKMGYLKEALNAYAVMN 482



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 121/633 (19%), Positives = 240/633 (37%), Gaps = 119/633 (18%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y  M+  LCK G LEEA  L+  +  +  + P +  ++  +    ++  + +A   +  M
Sbjct: 388 YTAMIDGLCKNGMLEEAVQLLDDM-LKVSVNPDVVTFSVLINGFFRVGKINNAKEIMCKM 446

Query: 185 DSRMVGKNEVTYTELL----KLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRL 240
               +  N + Y+ L+    K+   ++ L+A   +  ++  H +   F+    V +F R 
Sbjct: 447 YKTGLVPNGILYSTLIYNYCKMGYLKEALNAYAVM--NHSGHVA-DHFTCNVLVATFCRY 503

Query: 241 RDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVI 300
             L+ A   + HM                     SR+ +  P N++        +F  +I
Sbjct: 504 GKLEEAEYFMNHM---------------------SRMGLD-P-NSV--------TFDCII 532

Query: 301 HACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIV--------------------- 339
           +  G + ++  A  +  +M S G  PS  TY G ++ +                      
Sbjct: 533 NGYGNSGDALKAFSVFDKMNSFGHFPSLFTYGGLLKGLCIGGHINEALKFFHRLRCIPNA 592

Query: 340 --------------SDRGLRNGMEVLKIMQQNNLKPQDST----IATLSVECSKALELDL 381
                             L + + ++  M  N+  P + T    IA L  +      L L
Sbjct: 593 VDNVIFNTKLTSTCRSGNLSDAIALINEMVTNDFLPDNFTYTNLIAGLCKKGKIVAALLL 652

Query: 382 AEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFG 440
           +   +++     NP  +++ +           A+ IF +M  K + PD   + ++   + 
Sbjct: 653 SGKAIEKGLLSPNPAVYTSLVDGLLKHGHARAALYIFEEMLNKDVEPDTVAFNVIIDQYS 712

Query: 441 NVNAPYEEGNMFSQVDSAKRINAIEMDMARNNI-------QHSHISMKNLLKALGAEGMI 493
                 +  ++ S + S      +  ++A  NI       +H+      L K +   G +
Sbjct: 713 RKGKTSKVNDILSTMKSKN----LCFNLATYNILLHGYAKRHAMARCFMLYKDMIRHGFL 768

Query: 494 RE------LIQYFCDSKT----------------PLGTPTYNTVLHSLVEAQESHRAMEI 531
            +      LI  +C SK+                 +   T+N ++    E  E  +A E+
Sbjct: 769 PDKFSWHSLILGYCQSKSFDVAIKILRWITLEGHVIDRFTFNMLITKFCERNEMKKAFEL 828

Query: 532 FKQMKTCGIPPNAATYNIMIDCCSIIRC--FKSASALVSMMVRDGFYPQTMTYTALIKIL 589
            KQM    + PN  TYN + +   +IR   F  A  ++ +++  G  P    Y  LI  +
Sbjct: 829 VKQMNQFMVIPNVDTYNALFN--GLIRTSDFHKAHRVLQVLLESGSVPTNKQYITLINGM 886

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649
              G+   A+ L D +   GI    +  + I++      +I+   ++++ M + ++ P  
Sbjct: 887 CRVGNIKGAMKLQDEMKTLGISSHNVAMSAIVRGLANSKKIENAIWVLDLMLEMQIIPTV 946

Query: 650 STCHFVFSGYVNCGFHNSAMEALQVLSMRMLCE 682
           +T  F    +V C   N A +AL++ S+   C 
Sbjct: 947 AT--FTTLMHVYCKEANVA-KALELRSIMEHCH 976



 Score = 48.5 bits (114), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 32/156 (20%), Positives = 71/156 (45%)

Query: 495  ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCC 554
             ++Q   +S +      Y T+++ +        AM++  +MKT GI  +    + ++   
Sbjct: 862  RVLQVLLESGSVPTNKQYITLINGMCRVGNIKGAMKLQDEMKTLGISSHNVAMSAIVRGL 921

Query: 555  SIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDV 614
            +  +  ++A  ++ +M+     P   T+T L+ +     +  +AL L  ++    +  DV
Sbjct: 922  ANSKKIENAIWVLDLMLEMQIIPTVATFTTLMHVYCKEANVAKALELRSIMEHCHVKLDV 981

Query: 615  LLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650
            + YN ++   C  G I+    + E+M Q  + P+ S
Sbjct: 982  VAYNVLISGLCANGDIEAAFKLYEEMKQRDLWPNTS 1017



 Score = 45.8 bits (107), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 31/144 (21%), Positives = 63/144 (43%)

Query: 543 NAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL 602
           N A ++++I  C   R    A     +M   G  P   T   ++  L+     D   +  
Sbjct: 104 NPAVFDLLIRVCLRNRMVGDAVQTFYLMGFRGLNPSVYTCNMVLGSLVKEQKVDMFWSFF 163

Query: 603 DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNC 662
             +  +GI  DV  +N +L   CE+G+     F++ +M ++ V P   T + + + Y   
Sbjct: 164 KGMLAKGICPDVATFNILLNALCERGKFKNAGFLLRKMEESGVYPTAVTYNTLLNWYCKK 223

Query: 663 GFHNSAMEALQVLSMRMLCEEVST 686
           G + +A + +  ++ + +  +V T
Sbjct: 224 GRYKAASQLIDCMASKGIGVDVCT 247


>gi|9502388|gb|AAF88095.1|AC025417_23 T12C24.15 [Arabidopsis thaliana]
          Length = 735

 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 124/582 (21%), Positives = 221/582 (37%), Gaps = 50/582 (8%)

Query: 128 MMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSR 187
           ++  LC  G + EA  L+  + E  G  P L   N+ +        +  A L +D M   
Sbjct: 148 LINGLCLEGRVSEALELVDRMVE-MGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVET 206

Query: 188 MVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYSLSIFSLRKFVWSFTRLRDLKSA 246
               NEVTY  +LK+       +   E+      +   L        +    +   L +A
Sbjct: 207 GFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNA 266

Query: 247 YETLQHMVALAMMGKLYINRT-SEGRLRSSRLDIPIPLNALPVMKVLR---WSFSDVIHA 302
           +     M        + I  T   G   + R D    L    + + +     +FS +I  
Sbjct: 267 FNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDC 326

Query: 303 CGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQ 362
             +      AE+L  +M   G+ P + TY   I     +  L     +L +M      P 
Sbjct: 327 FVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPN 386

Query: 363 DSTIATLSVECSKALELDLAEALLDQIS---RCTNPKPFSAFLAACDTMDKPERAIKIFA 419
             T   L     KA  +D    L  ++S      +   ++  +     + K E A ++F 
Sbjct: 387 IRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQ 446

Query: 420 KM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHI 478
           +M  +++RPDI +Y++L     +   P +   +F +++ +K    +E+D+   NI     
Sbjct: 447 EMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSK----MELDIGIYNI----- 497

Query: 479 SMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQM 535
               ++  +     + +    FC        P   TYN ++  L +      A  +F++M
Sbjct: 498 ----IIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKM 553

Query: 536 KTCGIPPNAATYNIMI-------DCCS-------IIRC--------FKSASALVSMMVRD 573
           +  G  PN  TYNI+I       D          I RC         + A + ++ M++ 
Sbjct: 554 EEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVDASTLRFALSTLARMLKA 613

Query: 574 GFYPQTMTYTALIK--ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
           G  P   T+T L++   L +     +A  L   +   G   +V+ YNT++K       I 
Sbjct: 614 GHEPDVFTFTTLLRPFCLEENASVYDAPTLFKNMKAMGYKPNVVTYNTVIKGLLNGNMIS 673

Query: 632 VIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
            +  +++QM +   QP+  T     SG      H SA+  L+
Sbjct: 674 QVPGVLDQMFERGCQPNAVTKSTFISGLCKQDLHGSAILLLR 715



 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 81/391 (20%), Positives = 165/391 (42%), Gaps = 28/391 (7%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           ++ S +I+ C R +   LA   M ++  LG +P + T+   I  +  +  +   +E++  
Sbjct: 108 YTLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDR 167

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT---NPKPFSAFLAACDTMDK 410
           M +   KP   T+  L        ++  A  L+D++       N   +   L       +
Sbjct: 168 MVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQ 227

Query: 411 PERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
              A+++  KM + K++ D   Y ++        +     N+F++++    I   + D+ 
Sbjct: 228 TALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEME----IKGFKADI- 282

Query: 470 RNNIQHSHISMKNLLKALGAEG-------MIRELIQYFCDSKTPLGTPTYNTVLHSLVEA 522
                   I    L++     G       ++R++I+     K       ++ ++   V+ 
Sbjct: 283 --------IIYTTLIRGFCYAGRWDDGAKLLRDMIK----RKITPDVVAFSALIDCFVKE 330

Query: 523 QESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTY 582
            +   A E+ K+M   GI P+  TY  +ID          A+ ++ +MV  G  P   T+
Sbjct: 331 GKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTF 390

Query: 583 TALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642
             LI         D+ L L   +SL G+  D + YNT+++  CE G+++V + + ++M  
Sbjct: 391 NILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVS 450

Query: 643 NKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
            +V+PD  +   +  G  + G    A+E  +
Sbjct: 451 RRVRPDIVSYKILLDGLCDNGEPEKALEIFE 481



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 82/169 (48%), Gaps = 4/169 (2%)

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSM-- 569
           ++ +   +   ++    +++ KQM+  GI  N  T +IMI+CC   RC K + A  +M  
Sbjct: 75  FSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMINCCC--RCRKLSLAFSAMGK 132

Query: 570 MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
           +++ G+ P T+T++ LI  L   G   EAL L+D +   G    ++  N ++   C  G+
Sbjct: 133 IIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGK 192

Query: 630 IDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678
           +     +I++M +   QP+  T   V       G    AME L+ +  R
Sbjct: 193 VSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEER 241



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/222 (18%), Positives = 92/222 (41%), Gaps = 3/222 (1%)

Query: 468 MARNNIQHSHISMKNLLKAL---GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQE 524
           M     Q + ++   +LK +   G   +  EL++   + K  L    Y+ ++  L +   
Sbjct: 203 MVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGS 262

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
              A  +F +M+  G   +   Y  +I        +   + L+  M++    P  + ++A
Sbjct: 263 LDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSA 322

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
           LI   +  G   EA  L   +   GI  D + Y +++   C++ ++D    +++ M    
Sbjct: 323 LIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKG 382

Query: 645 VQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
             P+  T + + +GY      +  +E  + +S+R +  +  T
Sbjct: 383 CGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVT 424


>gi|387219047|gb|AFJ69232.1| hypothetical protein NGATSA_2004410 [Nannochloropsis gaditana
           CCMP526]
 gi|422293010|gb|EKU20311.1| hypothetical protein NGA_2004410 [Nannochloropsis gaditana CCMP526]
 gi|422293947|gb|EKU21247.1| hypothetical protein NGA_2004420 [Nannochloropsis gaditana CCMP526]
          Length = 1057

 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/343 (21%), Positives = 157/343 (45%), Gaps = 10/343 (2%)

Query: 311 LAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLS 370
           +A  ++ +M++ G+     TY+  + A   +   R  + +L+ M   ++ P   T  TL+
Sbjct: 563 VATSVLNRMRAAGVSVGVMTYNALLNACAREGDWRTSLAMLEEMDHQSVAPNVVTY-TLA 621

Query: 371 VE-CSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPE---RAIKIFAKMRQKLR 426
           +E C +  +   A  +L++++    P    A   A D   K +   +A+ +   +  + R
Sbjct: 622 MEACGRGGQWQAALEVLNEMTVRGVPLDSKACQTAIDVCAKVQDWNKALSLLRDVSAQGR 681

Query: 427 PDIRTYELLFSLFGNVNAPYEEG-NMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLK 485
             I       S  G     YE+    F +    +++  +   M R + + ++++M+   +
Sbjct: 682 DGIGDQ---GSGKGGTKELYEKAMAAFGRAGEWEKVLWLLEGMDRPDQKVTNLAMRACAQ 738

Query: 486 ALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAA 545
           A   E  +  L+Q            +YNT +H+  +A  + +A+++ K+M   G+ P+  
Sbjct: 739 AGRWEEAV-GLLQNMTSKGIAPDQWSYNTAIHACAQAGNAEKALKLLKEMGQEGVVPDVV 797

Query: 546 TYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLV 605
           +Y   +D C+ +   +++  L+  MV+ G +P   ++ A++    + G   EA+ +L L+
Sbjct: 798 SYTTAMDACASVGDVETSLRLLEEMVKKGVHPNHRSFNAIMSAHGNAGQATEAIAVLGLM 857

Query: 606 SLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
           +  G+  DV  Y   +     +G   V   I+E+MH  +V+ D
Sbjct: 858 TEHGLTPDVKSYTLAMDICLRQGLWQVALKIVERMHATRVRFD 900



 Score = 69.3 bits (168), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 81/412 (19%), Positives = 157/412 (38%), Gaps = 40/412 (9%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ V+  C +      A  L+ +M+  G++P   TY+  I A       +  +E L+ M
Sbjct: 245 AYTAVMDCCAKAGQWEAALTLIPEMKEAGVRPDRITYNTAIDACAKGGQWQRALEFLRGM 304

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMD----- 409
           ++ NL   +S + +    C+K      A  LL+++ +    K       +  T +     
Sbjct: 305 EEPNLISYNSALDS----CAKTGRWKEAVGLLEEMRQAGRRKDGRGSTVSDQTQEVGANQ 360

Query: 410 -KPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEG----NMFSQVDSAKRINAI 464
                 I      +  +RP+I +Y             +EE           D+ K    +
Sbjct: 361 GNTTNTIPGNRGSKPSIRPNIISYNTAIEACAK-RGRFEEALAILRSMQVPDTEKAGGHV 419

Query: 465 EMDMA---RNNIQHSH-----------ISMKNLLKALGAEGMIRELIQYFCDSKTP---- 506
            +  A   RN   H             ++  + +KA G  G     +    + +      
Sbjct: 420 PLPSASKKRNGASHHRRHQRLVPEPDLVTYHSAIKACGHAGQWEHALSLLAEVRAARWIE 479

Query: 507 LGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASAL 566
           L   TYN  + +  ++   + A+++ K+   CG   N  TYN  +  CS       A  L
Sbjct: 480 LEPSTYNAAIAACAKSGRFNEALDLLKE---CGDASNVVTYNSAMQACSSGGRPDLAFQL 536

Query: 567 VSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE 626
           + +M  +G  P  ++YT +++        D A ++L+ +   G+   V+ YN +L     
Sbjct: 537 LQVMKANGVEPDVVSYTTVMQ----RSSVDVATSVLNRMRAAGVSVGVMTYNALLNACAR 592

Query: 627 KGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678
           +G       ++E+M    V P+  T           G   +A+E L  +++R
Sbjct: 593 EGDWRTSLAMLEEMDHQSVAPNVVTYTLAMEACGRGGQWQAALEVLNEMTVR 644



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 130/655 (19%), Positives = 254/655 (38%), Gaps = 90/655 (13%)

Query: 90  FFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLG 149
           +  +++ CA++      +     M+E  +  +   Y   + A  KGG  + A   +  + 
Sbjct: 246 YTAVMDCCAKAGQWEAALTLIPEMKEAGVRPDRITYNTAIDACAKGGQWQRALEFLRGME 305

Query: 150 ERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM---DSRMVGKNEVTYTELLKLAVWQ 206
           E     P L  YNS L +CAK      A   L+ M     R  G+      +  ++   Q
Sbjct: 306 E-----PNLISYNSALDSCAKTGRWKEAVGLLEEMRQAGRRKDGRGSTVSDQTQEVGANQ 360

Query: 207 KNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFT----------RLRDLKSAYETLQHMVAL 256
            N +       + I     S  S+R  + S+           R  +  +   ++Q     
Sbjct: 361 GNTT-------NTIPGNRGSKPSIRPNIISYNTAIEACAKRGRFEEALAILRSMQVPDTE 413

Query: 257 AMMGKLYINRTSEGR------LRSSRLDIPIP---------------------LNALPVM 289
              G + +   S+ R       R  RL +P P                     L+ L  +
Sbjct: 414 KAGGHVPLPSASKKRNGASHHRRHQRL-VPEPDLVTYHSAIKACGHAGQWEHALSLLAEV 472

Query: 290 KVLRW------SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRG 343
           +  RW      +++  I AC +   SG   + +  ++  G   +  TY+  ++A  S   
Sbjct: 473 RAARWIELEPSTYNAAIAACAK---SGRFNEALDLLKECGDASNVVTYNSAMQACSSGGR 529

Query: 344 LRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRC---TNPKPFSA 400
                ++L++M+ N ++P   +  T+    S    +D+A ++L+++           ++A
Sbjct: 530 PDLAFQLLQVMKANGVEPDVVSYTTVMQRSS----VDVATSVLNRMRAAGVSVGVMTYNA 585

Query: 401 FLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSL---FGNVNAPYEEGNMFS--- 453
            L AC        ++ +  +M  Q + P++ TY L        G   A  E  N  +   
Sbjct: 586 LLNACAREGDWRTSLAMLEEMDHQSVAPNVVTYTLAMEACGRGGQWQAALEVLNEMTVRG 645

Query: 454 -QVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPT- 511
             +DS     AI++      +Q  + ++ +LL+ + A+G  R+ I      K   GT   
Sbjct: 646 VPLDSKACQTAIDVCA---KVQDWNKAL-SLLRDVSAQG--RDGIGDQGSGKG--GTKEL 697

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           Y   + +   A E  + + + + M      P+    N+ +  C+    ++ A  L+  M 
Sbjct: 698 YEKAMAAFGRAGEWEKVLWLLEGMDR----PDQKVTNLAMRACAQAGRWEEAVGLLQNMT 753

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
             G  P   +Y   I      G+ ++AL LL  +  EG+  DV+ Y T +      G ++
Sbjct: 754 SKGIAPDQWSYNTAIHACAQAGNAEKALKLLKEMGQEGVVPDVVSYTTAMDACASVGDVE 813

Query: 632 VIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
               ++E+M +  V P+  + + + S + N G    A+  L +++   L  +V +
Sbjct: 814 TSLRLLEEMVKKGVHPNHRSFNAIMSAHGNAGQATEAIAVLGLMTEHGLTPDVKS 868



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 59/138 (42%), Gaps = 6/138 (4%)

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           Y  V+      +    A+ + + M+T G PP+   Y  ++DCC+    +++A  L+  M 
Sbjct: 211 YTLVIQICARQERWFEAVRLLRDMRTRGAPPDLVAYTAVMDCCAKAGQWEAALTLIPEMK 270

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLL-YNTILKKACEKGRI 630
             G  P  +TY   I      G +  AL       L G+    L+ YN+ L    + GR 
Sbjct: 271 EAGVRPDRITYNTAIDACAKGGQWQRALEF-----LRGMEEPNLISYNSALDSCAKTGRW 325

Query: 631 DVIEFIIEQMHQNKVQPD 648
                ++E+M Q   + D
Sbjct: 326 KEAVGLLEEMRQAGRRKD 343



 Score = 49.7 bits (117), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 66/347 (19%), Positives = 136/347 (39%), Gaps = 34/347 (9%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ +++AC R  +   +  ++ +M    + P+  TY   + A       +  +EVL  M
Sbjct: 582 TYNALLNACAREGDWRTSLAMLEEMDHQSVAPNVVTYTLAMEACGRGGQWQAALEVLNEM 641

Query: 355 QQNNLKPQDSTIATLSVE-CSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPER 413
               + P DS     +++ C+K  + + A +LL  +S                T +  E+
Sbjct: 642 TVRGV-PLDSKACQTAIDVCAKVQDWNKALSLLRDVSAQGRDGIGDQGSGKGGTKELYEK 700

Query: 414 AIKIFAKMRQ--KL--------RPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINA 463
           A+  F +  +  K+        RPD +   L           +EE     Q  ++K I  
Sbjct: 701 AMAAFGRAGEWEKVLWLLEGMDRPDQKVTNLAMRACAQAGR-WEEAVGLLQNMTSKGIAP 759

Query: 464 IEMDMARNNIQHSHISMKN------LLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLH 517
            +     N   H+     N      LLK +G EG++ +++             +Y T + 
Sbjct: 760 DQWSY--NTAIHACAQAGNAEKALKLLKEMGQEGVVPDVV-------------SYTTAMD 804

Query: 518 SLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYP 577
           +     +   ++ + ++M   G+ PN  ++N ++           A A++ +M   G  P
Sbjct: 805 ACASVGDVETSLRLLEEMVKKGVHPNHRSFNAIMSAHGNAGQATEAIAVLGLMTEHGLTP 864

Query: 578 QTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKA 624
              +YT  + I L  G +  AL +++ +    +  D + Y   +  A
Sbjct: 865 DVKSYTLAMDICLRQGLWQVALKIVERMHATRVRFDAISYGKAIHAA 911



 Score = 40.8 bits (94), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 24/99 (24%), Positives = 44/99 (44%)

Query: 575 FYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIE 634
            +P    YT +I+I      + EA+ LL  +   G P D++ Y  ++    + G+ +   
Sbjct: 204 VHPSVQQYTLVIQICARQERWFEAVRLLRDMRTRGAPPDLVAYTAVMDCCAKAGQWEAAL 263

Query: 635 FIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
            +I +M +  V+PD  T +         G    A+E L+
Sbjct: 264 TLIPEMKEAGVRPDRITYNTAIDACAKGGQWQRALEFLR 302


>gi|125559009|gb|EAZ04545.1| hypothetical protein OsI_26694 [Oryza sativa Indica Group]
          Length = 784

 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 78/344 (22%), Positives = 144/344 (41%), Gaps = 26/344 (7%)

Query: 314 QLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVEC 373
           +L+  M+  G+ P  +TY+  I         +   +V   M+ +  +P   T  +L    
Sbjct: 229 ELVASMKEHGVAPDRYTYNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVY 288

Query: 374 SKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKP---ERAIKIFAKMRQK-LRPDI 429
            KA   D A  ++ ++ R   P     + +   +  K    E+A+ +  +M  K ++PD+
Sbjct: 289 GKARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGIKPDV 348

Query: 430 RTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINA--IEMD-MARNNIQHSHISMKNLLKA 486
            TY  L S                 +D A +I+A  +E D M RN  + +  +   L+K 
Sbjct: 349 VTYTTLIS----------------GLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKM 392

Query: 487 LGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPN 543
            G  G   E++  F + ++    P   T+NT+L    +         +FK+MK  G  P 
Sbjct: 393 HGVRGKFPEMMAVFDELRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPE 452

Query: 544 AATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLD 603
             TY  +I   S    F  A  +   M+  G YP   TY A++  L   G +++A  L  
Sbjct: 453 RDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFA 512

Query: 604 LVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
            +       D   Y+++L       R+D ++ + + ++  +++P
Sbjct: 513 EMEERDCKPDEYSYSSLLHAYANAKRLDKMKALSDDIYSERIEP 556



 Score = 82.4 bits (202), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 78/356 (21%), Positives = 144/356 (40%), Gaps = 60/356 (16%)

Query: 374 SKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDKPERAIKIFAKM-RQKLRPD 428
           ++A  L  A ALLD       P P    ++A ++A     +   A+ +F +M    ++P 
Sbjct: 152 ARAGRLAEASALLD-----AAPGPDAGAYTALVSAFSRAGRFRDAVAVFRRMVDSGVQPA 206

Query: 429 IRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALG 488
           I TY ++  ++  +  P++E            +  +   M  + +     +   L+    
Sbjct: 207 IVTYNVVLHVYSKMAVPWKE------------VVELVASMKEHGVAPDRYTYNTLISCCR 254

Query: 489 AEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAA 545
              + +E  Q F + K     P   T+N++L    +A+    A+E+ ++M+  G PP+  
Sbjct: 255 RRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVV 314

Query: 546 TYNIMIDC---------------------------------CSIIRCFKSASALVSM--M 570
           TYN +I                                     + R  K  +A+V    M
Sbjct: 315 TYNSLISSYVKDGLLEQAVALKQEMEVKGIKPDVVTYTTLISGLDRAGKIDAAIVEYDEM 374

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           VR+G  P   TY ALIK+    G F E + + D +   G   D++ +NT+L    + G  
Sbjct: 375 VRNGCKPNLCTYNALIKMHGVRGKFPEMMAVFDELRSAGFVPDIVTWNTLLAVFGQNGLD 434

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
             +  + ++M +    P+  T   + S Y  CG  + AM+  + +    +  +VST
Sbjct: 435 SEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVST 490



 Score = 79.3 bits (194), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 111/542 (20%), Positives = 216/542 (39%), Gaps = 64/542 (11%)

Query: 150 ERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKL-AVWQKN 208
           + +G+ P    YN+ +  C +      A    D M +     ++VT+  LL +    +++
Sbjct: 235 KEHGVAPDRYTYNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKARRH 294

Query: 209 LSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRT- 267
             A+  I E        S+ +    + S+ +   L+ A    Q M    +   +    T 
Sbjct: 295 DEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGIKPDVVTYTTL 354

Query: 268 SEGRLRSSRLDIPI----------------PLNALPVMKVLRWSFSDVIHACGRTQNSGL 311
             G  R+ ++D  I                  NAL  M  +R  F +++           
Sbjct: 355 ISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGVRGKFPEMM----------- 403

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGME-VLKIMQQNNLKPQDSTIATLS 370
              +  +++S G  P   T++  + A+    GL + +  V K M++    P+  T  +L 
Sbjct: 404 --AVFDELRSAGFVPDIVTWNTLL-AVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLI 460

Query: 371 VECSKALELDLAEALLDQISRC---TNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LR 426
              S+    DLA  +  ++       +   ++A L+A     + E+A K+FA+M ++  +
Sbjct: 461 SSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCK 520

Query: 427 PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI------------------NAIEMDM 468
           PD  +Y  L   + N     ++    S    ++RI                  N  E + 
Sbjct: 521 PDEYSYSSLLHAYANAKR-LDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEK 579

Query: 469 ARNNIQHSHISMK-NLLKAL----GAEGMIR---ELIQYFCDSKTPLGTPTYNTVLHSLV 520
           A   ++    S+  N+L A+    G   M+R   +++    +S   L   TYN+++H   
Sbjct: 580 AFLELRQKRCSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYS 639

Query: 521 EAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTM 580
              +  +   I  ++K+ G+ P+  +YN +I         K AS L S M   G  P  +
Sbjct: 640 RLGDCEKCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVV 699

Query: 581 TYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQM 640
           TY   +K  +    F+EA+ L+  +  +G   +   YN+I++  C  G++   +  +  +
Sbjct: 700 TYNIFVKSYVSNSMFEEAIELVRYMVTQGCKPNERTYNSIVEGYCRNGKLTDAKIFVSNL 759

Query: 641 HQ 642
            Q
Sbjct: 760 PQ 761



 Score = 57.8 bits (138), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 73/385 (18%), Positives = 143/385 (37%), Gaps = 66/385 (17%)

Query: 326 PSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTI-------ATLSVECSKALE 378
           P +  Y   + A       R+ + V + M  + ++P   T        + ++V   + +E
Sbjct: 170 PDAGAYTALVSAFSRAGRFRDAVAVFRRMVDSGVQPAIVTYNVVLHVYSKMAVPWKEVVE 229

Query: 379 LDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFS 437
           L    A + +     +   ++  ++ C      + A ++F +M+     PD  T+  L  
Sbjct: 230 L---VASMKEHGVAPDRYTYNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLD 286

Query: 438 LFGNVNAPYEEGNMFSQVDSAKRINAIEM--DMARNNIQHSHISMKNLLKALGAEGMIRE 495
           ++G                  +   AIE+  +M R     S ++  +L+ +   +G++ +
Sbjct: 287 VYGKAR---------------RHDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQ 331

Query: 496 LIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI- 551
            +    + +     P   TY T++  L  A +   A+  + +M   G  PN  TYN +I 
Sbjct: 332 AVALKQEMEVKGIKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIK 391

Query: 552 ---------DCCSIIRCFKSA-------------------------SALVSMMVRDGFYP 577
                    +  ++    +SA                         S +   M + G+ P
Sbjct: 392 MHGVRGKFPEMMAVFDELRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIP 451

Query: 578 QTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFII 637
           +  TY +LI      G FD A+ +   +   GI  DV  YN +L      GR +  E + 
Sbjct: 452 ERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLF 511

Query: 638 EQMHQNKVQPDPSTCHFVFSGYVNC 662
            +M +   +PD  +   +   Y N 
Sbjct: 512 AEMEERDCKPDEYSYSSLLHAYANA 536



 Score = 49.7 bits (117), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 66/284 (23%), Positives = 112/284 (39%), Gaps = 34/284 (11%)

Query: 105 FVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSF 164
             M+ ++ M E  I  +   Y  ++ AL +GG  E+A  L   + ER    P    Y+S 
Sbjct: 471 LAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEER-DCKPDEYSYSSL 529

Query: 165 LGACAKLHSMVHAN-LCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHY 223
           L A A    +     L  D+   R+   N +  T +L  +       A     E   K  
Sbjct: 530 LHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLELRQKRC 589

Query: 224 SLSIFSLRKFVWSFTRLRDLK------------------SAYETLQHMVALAMMGKLYIN 265
           SL I  L   V  + + R ++                  + Y +L HM +     +   N
Sbjct: 590 SLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGDCEKCEN 649

Query: 266 RTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQ 325
             +E +    R D              R+S++ VI+A GR      A +L  +M+  GL+
Sbjct: 650 ILTEIKSSGVRPD--------------RYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLK 695

Query: 326 PSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL 369
           P   TY+ F+++ VS+      +E+++ M     KP + T  ++
Sbjct: 696 PDVVTYNIFVKSYVSNSMFEEAIELVRYMVTQGCKPNERTYNSI 739


>gi|302771513|ref|XP_002969175.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
 gi|300163680|gb|EFJ30291.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
          Length = 399

 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 78/325 (24%), Positives = 131/325 (40%), Gaps = 31/325 (9%)

Query: 320 QSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALEL 379
           Q  G+ P+   Y+ F+ A+     +   MEV+K M+    KP   T  TL     KA  L
Sbjct: 46  QQPGMAPTPSMYNFFVHALCKSGKVPEAMEVVKNMKDGACKPDVVTFNTLIAGLCKAGRL 105

Query: 380 DLAEALLDQISR---CTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLF 436
           D A+ +LD++ R     N   ++  +    +  +   A+ +   M     PD +TY  + 
Sbjct: 106 DEAQQVLDEMERSGFAANLVTYNTLINGLSSAGRSGEAVLVMQGMTTT--PDTQTYNAII 163

Query: 437 SLF---GNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMI 493
             F   G ++  Y                 +E    R        +   L+  L     +
Sbjct: 164 HGFCKSGEIDRAY---------------GFLEEMKQRAGCSPDTFTYSILINGLCKSSNL 208

Query: 494 R---ELIQYFCDSKTPLGTPT-YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNI 549
           R   EL+Q     K    +   +NT++    +AQ+  RA E+   M   G  P+  TY+ 
Sbjct: 209 RKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYST 268

Query: 550 MIDCCSIIRC--FKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSL 607
           +ID   + RC       AL+  MV  G  P  +TYT L+  L   G   EA  L+  +  
Sbjct: 269 IID--GLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLE 326

Query: 608 EGIPHDVLLYNTILKKACEKGRIDV 632
           +G   + + Y+ +    C+  ++D+
Sbjct: 327 DGCTPNAVTYSLVFDGLCKIDKLDM 351



 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 73/319 (22%), Positives = 133/319 (41%), Gaps = 53/319 (16%)

Query: 379 LDLAEALLDQISRCTNPKPFSAFL-AACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLF 436
           +DL   +  Q      P  ++ F+ A C +   PE A+++   M+    +PD+ T+  L 
Sbjct: 38  MDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPE-AMEVVKNMKDGACKPDVVTFNTLI 96

Query: 437 SLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIREL 496
           +  G   A         ++D A+++     +M R+    + ++   L+  L + G   E 
Sbjct: 97  A--GLCKA--------GRLDEAQQVLD---EMERSGFAANLVTYNTLINGLSSAGRSGEA 143

Query: 497 IQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKT-CGIPPNAATYNIMI---- 551
           +       T   T TYN ++H   ++ E  RA    ++MK   G  P+  TY+I+I    
Sbjct: 144 VLVMQGMTTTPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLC 203

Query: 552 -------------------DCCSIIRCFKS-------------ASALVSMMVRDGFYPQT 579
                              DCC+ +  F +             A  L+S M+  G  P  
Sbjct: 204 KSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDV 263

Query: 580 MTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQ 639
           +TY+ +I  L   GD D+   LL+ +   G   DV+ Y  ++   C+ G++     ++++
Sbjct: 264 VTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKR 323

Query: 640 MHQNKVQPDPSTCHFVFSG 658
           M ++   P+  T   VF G
Sbjct: 324 MLEDGCTPNAVTYSLVFDG 342



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 78/178 (43%), Gaps = 5/178 (2%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI-DCCSIIRCFKSASALVSM 569
           TYNT+++ L  A  S  A+ + + M T    P+  TYN +I   C      ++   L  M
Sbjct: 126 TYNTLINGLSSAGRSGEAVLVMQGMTT---TPDTQTYNAIIHGFCKSGEIDRAYGFLEEM 182

Query: 570 MVRDGFYPQTMTYTALIKILLDYGDFDEALNLL-DLVSLEGIPHDVLLYNTILKKACEKG 628
             R G  P T TY+ LI  L    +  +A  LL +++  +     V+ +NT++   C+  
Sbjct: 183 KQRAGCSPDTFTYSILINGLCKSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQ 242

Query: 629 RIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
            +D    ++  M ++   PD  T   +  G   CG  +     L+ +  R    +V T
Sbjct: 243 DLDRARELLSSMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVT 300



 Score = 39.3 bits (90), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 21/103 (20%), Positives = 48/103 (46%)

Query: 574 GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVI 633
           G  P    Y   +  L   G   EA+ ++  +       DV+ +NT++   C+ GR+D  
Sbjct: 49  GMAPTPSMYNFFVHALCKSGKVPEAMEVVKNMKDGACKPDVVTFNTLIAGLCKAGRLDEA 108

Query: 634 EFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
           + ++++M ++    +  T + + +G  + G    A+  +Q ++
Sbjct: 109 QQVLDEMERSGFAANLVTYNTLINGLSSAGRSGEAVLVMQGMT 151


>gi|358346363|ref|XP_003637238.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503173|gb|AES84376.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 663

 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 88/354 (24%), Positives = 152/354 (42%), Gaps = 31/354 (8%)

Query: 311 LAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLS 370
           LAE ++ +M+   + P+  T+   I        L   ++VL+ M Q N+ P     A L 
Sbjct: 133 LAELVLQKMEKEHVPPNVITFSSIINGYAKKGMLSKAVDVLREMVQRNVMPNTIVYAILI 192

Query: 371 VECSKALELDLAEALLDQI-SRCTNPKP--FSAFLAACDTMDKPERAIKIFAKMRQK-LR 426
               KA E D+A+    ++ SR        F   L     + + + A  +   M  K + 
Sbjct: 193 DGYFKAGEQDVADDFCKEMKSRRLEESNVIFDILLNNLKRVGRMDEARSLIIDMYSKGID 252

Query: 427 PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKA 486
           PDI  Y  L      ++  ++EGN  + +       +I  +M   NI+   ++   L+K 
Sbjct: 253 PDIVNYASL------IDGYFKEGNQLAAL-------SIVQEMKEKNIRFDVVAYNALIKG 299

Query: 487 LGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAAT 546
           L   G      +Y C     LG          L    ++  A++I  +MK+ GI PNA T
Sbjct: 300 LLRLGKYDP--RYVCSRMIELG----------LAPDCKTEDALDILNEMKSYGIMPNAVT 347

Query: 547 YNIMI-DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLV 605
           YNI+I   C      K+ SAL  M+V + F P  +T+  L+K        D+ L + + +
Sbjct: 348 YNILIGGLCKTGAVEKAESALDEMLVME-FVPTPITHKFLVKAYSRSEKADKILQIHEKL 406

Query: 606 SLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
              G+   + +YNT++   C  G     + ++++M +  +  D  T + +  GY
Sbjct: 407 VASGLELSLTVYNTLITVFCRLGMTRKAKVVLDEMVKRGISADLVTYNALIRGY 460



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 80/357 (22%), Positives = 135/357 (37%), Gaps = 56/357 (15%)

Query: 269 EGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSS 328
           E + ++ R D+ +  NAL +  +LR    D  + C R             M  LGL P  
Sbjct: 280 EMKEKNIRFDV-VAYNAL-IKGLLRLGKYDPRYVCSR-------------MIELGLAPDC 324

Query: 329 HTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ 388
            T D               +++L  M+   + P   T   L     K   ++ AE+ LD+
Sbjct: 325 KTEDA--------------LDILNEMKSYGIMPNAVTYNILIGGLCKTGAVEKAESALDE 370

Query: 389 I---SRCTNPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNA 444
           +        P      + A    +K ++ ++I  K+    L   +  Y  L ++F     
Sbjct: 371 MLVMEFVPTPITHKFLVKAYSRSEKADKILQIHEKLVASGLELSLTVYNTLITVF----- 425

Query: 445 PYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL----GAEGMIRELIQYF 500
                    ++   ++   +  +M +  I    ++   L++        E  ++   Q F
Sbjct: 426 --------CRLGMTRKAKVVLDEMVKRGISADLVTYNALIRGYCTGSHVEKALKTYSQMF 477

Query: 501 CDSKTPLGTPTYNTVLHSLVEA----QESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSI 556
            D   P    TYNT+L  L  A    +      ++  +M   G+ PNAATY+I++     
Sbjct: 478 VDGIAP-NITTYNTLLGGLSNAGLMEEMMEETEKLVSEMNERGLVPNAATYDILVSGYGR 536

Query: 557 IRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL-DLVSLEGIPH 612
           +   K    L   M+  GF P   TY  LI      G   EA  LL DL++   IP+
Sbjct: 537 VGNRKKTIILHIEMITKGFVPTLKTYNVLISDYAKSGKMIEARELLNDLLTKGRIPN 593



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/190 (22%), Positives = 84/190 (44%), Gaps = 11/190 (5%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           +Y T+++SL ++     A  +  QM   GI  +  T   ++D    +   K A  +   +
Sbjct: 47  SYATIINSLFKSGRVMEAFNLQSQMVVRGISFDIVTCTTVMDGLFKVGKTKEAEEVFETI 106

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           ++    P  +TY+AL+      G  + A  +L  +  E +P +V+ +++I+    +KG +
Sbjct: 107 LKLNLAPNCVTYSALLDGYCKLGKMELAELVLQKMEKEHVPPNVITFSSIINGYAKKGML 166

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST--LE 688
                ++ +M Q  V P+      +  GY   G  + A +          C+E+ +  LE
Sbjct: 167 SKAVDVLREMVQRNVMPNTIVYAILIDGYFKAGEQDVADD---------FCKEMKSRRLE 217

Query: 689 EKRSDFEDLI 698
           E    F+ L+
Sbjct: 218 ESNVIFDILL 227



 Score = 46.2 bits (108), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 34/163 (20%), Positives = 69/163 (42%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TY+ +L    +  +   A  + ++M+   +PPN  T++ +I+  +       A  ++  M
Sbjct: 117 TYSALLDGYCKLGKMELAELVLQKMEKEHVPPNVITFSSIINGYAKKGMLSKAVDVLREM 176

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           V+    P T+ Y  LI      G+ D A +    +    +    ++++ +L      GR+
Sbjct: 177 VQRNVMPNTIVYAILIDGYFKAGEQDVADDFCKEMKSRRLEESNVIFDILLNNLKRVGRM 236

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           D    +I  M+   + PD      +  GY   G   +A+  +Q
Sbjct: 237 DEARSLIIDMYSKGIDPDIVNYASLIDGYFKEGNQLAALSIVQ 279


>gi|357485461|ref|XP_003613018.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355514353|gb|AES95976.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 894

 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 85/389 (21%), Positives = 148/389 (38%), Gaps = 20/389 (5%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           SF+ +++A  +  N  +A+     +   G    S TY   I        L +  +V +IM
Sbjct: 192 SFNTMVNAHCKIGNVVVAKAYFCGLMKFGFCCDSFTYTSLILGYCKIHELGDAYKVFEIM 251

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR--CTNPKP-FSAFLAACDTMDKP 411
            Q      + +   L     +  ++D A  L  Q+    C    P ++  +AA   + K 
Sbjct: 252 PQEGCLRNEVSYTNLIHGFCEVGKIDEALELFFQMKEDGCFPDVPTYTVLVAAFCEVGKE 311

Query: 412 ERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
             A+K F +M +  + P++ TY +L   F  V    E   M S              M  
Sbjct: 312 TEALKFFEEMVENGIEPNVYTYTVLIDYFCKVGKMDEGMEMLST-------------MLE 358

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHR 527
             +  S +    L+      GM+ + I      K     P   TYN ++      +   R
Sbjct: 359 KGLVSSVVPFNALIDGYCKRGMMEDAICVLDSMKLNKVCPNSRTYNELICGFCRKKSMDR 418

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           AM +  +M    + PN  TYN +I      R   SA  L  +M++DGF P   T+ A I 
Sbjct: 419 AMALLNKMYENKLSPNLVTYNTLIHGLCKARVVDSAWRLHHLMIKDGFVPDQRTFCAFID 478

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
            L   G  ++A  + + +  +    +  LY  ++   C+  +      + ++M      P
Sbjct: 479 CLCKMGKVEQAHQVFESLKEKHAEANEFLYTALIDGYCKAEKFSDAHLLFKRMLFEGCFP 538

Query: 648 DPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
           +  T + +  G    G    AM  + V+ 
Sbjct: 539 NSITFNVLLDGLRKEGKVEDAMSLVDVMG 567



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 90/392 (22%), Positives = 164/392 (41%), Gaps = 23/392 (5%)

Query: 286 LPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLR 345
           +P   VL  +F +V    G+      A +   +M   G++P+ +TY   I        + 
Sbjct: 295 VPTYTVLVAAFCEV----GKETE---ALKFFEEMVENGIEPNVYTYTVLIDYFCKVGKMD 347

Query: 346 NGMEVLKIMQQNNLKPQDSTI-ATLSVECSKALELDLAEALLDQISR---CTNPKPFSAF 401
            GME+L  M +  L        A +   C + +  D A  +LD +     C N + ++  
Sbjct: 348 EGMEMLSTMLEKGLVSSVVPFNALIDGYCKRGMMED-AICVLDSMKLNKVCPNSRTYNEL 406

Query: 402 LAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKR 460
           +         +RA+ +  KM + KL P++ TY  L  + G   A          VDSA R
Sbjct: 407 ICGFCRKKSMDRAMALLNKMYENKLSPNLVTYNTL--IHGLCKA--------RVVDSAWR 456

Query: 461 INAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLV 520
           ++ + +       Q +  +  + L  +G      ++ +   +         Y  ++    
Sbjct: 457 LHHLMIKDGFVPDQRTFCAFIDCLCKMGKVEQAHQVFESLKEKHAEANEFLYTALIDGYC 516

Query: 521 EAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTM 580
           +A++   A  +FK+M   G  PN+ T+N+++D        + A +LV +M +    P   
Sbjct: 517 KAEKFSDAHLLFKRMLFEGCFPNSITFNVLLDGLRKEGKVEDAMSLVDVMGKFDAKPTVH 576

Query: 581 TYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQM 640
           TYT LI+ +L   DFD A   LD +   G   +V+ Y   +K  C +GR+   E ++ ++
Sbjct: 577 TYTILIEEILRESDFDRANMFLDQMISSGCQPNVVTYTAFIKAYCRQGRLLEAEEMVVKI 636

Query: 641 HQNKVQPDPSTCHFVFSGYVNCGFHNSAMEAL 672
            +  +  D      + + Y   G  +SA   L
Sbjct: 637 KEEGILLDSFIYDVLVNAYGCIGQLDSAFGVL 668



 Score = 73.2 bits (178), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 124/567 (21%), Positives = 207/567 (36%), Gaps = 102/567 (17%)

Query: 128 MMQALCKGGYLEEASNLIYFLG-ERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDS 186
           M+ A CK G +  A    YF G  ++G       Y S +    K+H +  A    ++M  
Sbjct: 196 MVNAHCKIGNVVVAK--AYFCGLMKFGFCCDSFTYTSLILGYCKIHELGDAYKVFEIMPQ 253

Query: 187 RMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIF----SLRKFVWSFTRLRD 242
               +NEV+YT L+        +  + E  E + +      F    +    V +F  +  
Sbjct: 254 EGCLRNEVSYTNLIHGFC---EVGKIDEALELFFQMKEDGCFPDVPTYTVLVAAFCEVGK 310

Query: 243 LKSAYETLQHMVALAMMGKLY-----------INRTSEGR------LRSSRLDIPIPLNA 285
              A +  + MV   +   +Y           + +  EG       L    +   +P NA
Sbjct: 311 ETEALKFFEEMVENGIEPNVYTYTVLIDYFCKVGKMDEGMEMLSTMLEKGLVSSVVPFNA 370

Query: 286 LPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQ---PSSHTYDGFIRAIVSDR 342
           L            +   C R    G+ E  +  + S+ L    P+S TY+  I      +
Sbjct: 371 L------------IDGYCKR----GMMEDAICVLDSMKLNKVCPNSRTYNELICGFCRKK 414

Query: 343 GLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLA---EALLDQISRCTNPKPFS 399
            +   M +L  M +N L P   T  TL     KA  +D A     L+ +     + + F 
Sbjct: 415 SMDRAMALLNKMYENKLSPNLVTYNTLIHGLCKARVVDSAWRLHHLMIKDGFVPDQRTFC 474

Query: 400 AFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAK 459
           AF+     M K E+A ++F  +++K        E L++   +    Y +   FS      
Sbjct: 475 AFIDCLCKMGKVEQAHQVFESLKEK---HAEANEFLYTALID---GYCKAEKFSD----- 523

Query: 460 RINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSL 519
                           +H+  K +L     EG     I             T+N +L  L
Sbjct: 524 ----------------AHLLFKRML----FEGCFPNSI-------------TFNVLLDGL 550

Query: 520 VEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIR--CFKSASALVSMMVRDGFYP 577
            +  +   AM +   M      P   TY I+I+   I+R   F  A+  +  M+  G  P
Sbjct: 551 RKEGKVEDAMSLVDVMGKFDAKPTVHTYTILIE--EILRESDFDRANMFLDQMISSGCQP 608

Query: 578 QTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFII 637
             +TYTA IK     G   EA  ++  +  EGI  D  +Y+ ++      G++D    ++
Sbjct: 609 NVVTYTAFIKAYCRQGRLLEAEEMVVKIKEEGILLDSFIYDVLVNAYGCIGQLDSAFGVL 668

Query: 638 EQMHQNKVQPDPSTC-----HFVFSGY 659
            +M     +P   T      H +F  Y
Sbjct: 669 IRMFDTGCEPSRQTYSILLKHLIFEKY 695



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 61/293 (20%), Positives = 114/293 (38%), Gaps = 15/293 (5%)

Query: 396 KPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTY------ELLFSLFGNVNA-PYEE 448
           KPFS+        D P +   I  + + +  P   T         L SLF N N  P   
Sbjct: 27  KPFSSLSPNSLQQDLPSQIFTILLQPQWRKNPSFNTLIPSLTPTHLSSLFNNPNLHPLTA 86

Query: 449 GNMFSQVD-------SAKRINAIEMDMARNNIQHSHISMKN-LLKALGAEGMIRELIQYF 500
            N F  +        +      +   + RN    +  +++N ++K+  +    R ++   
Sbjct: 87  LNFFKWIHYQHGFIHTVHSYQPLLFILVRNGFLRAAENVRNSMIKSCVSSHEARFVLNLL 146

Query: 501 CDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCF 560
              +  L   +YN +   L           +FK M   G+ PN  ++N M++    I   
Sbjct: 147 THHEFSLSVTSYNRLFMVLSRFGLIDELNCLFKDMLNDGVEPNLISFNTMVNAHCKIGNV 206

Query: 561 KSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTI 620
             A A    +++ GF   + TYT+LI       +  +A  + +++  EG   + + Y  +
Sbjct: 207 VVAKAYFCGLMKFGFCCDSFTYTSLILGYCKIHELGDAYKVFEIMPQEGCLRNEVSYTNL 266

Query: 621 LKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           +   CE G+ID    +  QM ++   PD  T   + + +   G    A++  +
Sbjct: 267 IHGFCEVGKIDEALELFFQMKEDGCFPDVPTYTVLVAAFCEVGKETEALKFFE 319



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 111/541 (20%), Positives = 215/541 (39%), Gaps = 84/541 (15%)

Query: 107 METWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLG 166
           ++ +  M E  I  N   Y +++   CK G ++E   ++  + E+  +  ++P +N+ + 
Sbjct: 315 LKFFEEMVENGIEPNVYTYTVLIDYFCKVGKMDEGMEMLSTMLEKGLVSSVVP-FNALID 373

Query: 167 ACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLS-AVHEIWEDYIKHYSL 225
              K   M  A   LD M    V  N  TY EL+     +K++  A+  + + Y    S 
Sbjct: 374 GYCKRGMMEDAICVLDSMKLNKVCPNSRTYNELICGFCRKKSMDRAMALLNKMYENKLSP 433

Query: 226 SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLN- 284
           ++ +    +    + R + SA+  L H+    M+   ++    + R   + +D    +  
Sbjct: 434 NLVTYNTLIHGLCKARVVDSAWR-LHHL----MIKDGFV---PDQRTFCAFIDCLCKMGK 485

Query: 285 ---ALPVMKVLR--------WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDG 333
              A  V + L+        + ++ +I    + +    A  L  +M   G  P+S T++ 
Sbjct: 486 VEQAHQVFESLKEKHAEANEFLYTALIDGYCKAEKFSDAHLLFKRMLFEGCFPNSITFNV 545

Query: 334 FIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI--SR 391
            +  +  +  + + M ++ +M + + KP   T   L  E  +  + D A   LDQ+  S 
Sbjct: 546 LLDGLRKEGKVEDAMSLVDVMGKFDAKPTVHTYTILIEEILRESDFDRANMFLDQMISSG 605

Query: 392 CT-NPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEG 449
           C  N   ++AF+ A     +   A ++  K++++ +  D   Y++L + +G +       
Sbjct: 606 CQPNVVTYTAFIKAYCRQGRLLEAEEMVVKIKEEGILLDSFIYDVLVNAYGCI------- 658

Query: 450 NMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGT 509
               Q+DSA  +                                  LI+ F D+      
Sbjct: 659 ---GQLDSAFGV----------------------------------LIRMF-DTGCEPSR 680

Query: 510 PTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSI--IRCFKSASALV 567
            TY+ +L  L           IF++    G+  +  + NI +D  +I  I  F+  + L 
Sbjct: 681 QTYSILLKHL-----------IFEKYNKEGMGLDLNSTNISVDNANIWKIADFEIITMLF 729

Query: 568 SMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEK 627
             MV  G  P   TY+ LIK L        A  L + +   GI     ++N++L   C+ 
Sbjct: 730 EKMVEQGCVPNVNTYSKLIKGLCKVEHLSLAFRLFNHMKESGISPSENIHNSLLSSCCKL 789

Query: 628 G 628
           G
Sbjct: 790 G 790


>gi|357503117|ref|XP_003621847.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496862|gb|AES78065.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 457

 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 81/371 (21%), Positives = 145/371 (39%), Gaps = 52/371 (14%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           AE +++    LGL P   TY+  I       G+     +L  M++  + P   +  +LS 
Sbjct: 26  AETVLIDGIKLGLNPDIITYNTLIDGYCRFVGIDAAYNILNRMKEAGINPDVVSYNSLS- 84

Query: 372 ECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIR 430
             S A+   L +  LD                             +F +M Q  +RPD+ 
Sbjct: 85  --SGAVRKCLLQKSLD-----------------------------LFDEMLQSGIRPDVW 113

Query: 431 TYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAE 490
           +Y +L   +  +  P E   +F  +              R  I  S  S   ++  L   
Sbjct: 114 SYNILMHCYFRLGKPEEANGVFRDI------------FERGEIYPSMASYNVMINGLCKN 161

Query: 491 GMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATY 547
           G +   +  F + +     P   TYN +++ L +A+    A  +  +    G  PNA TY
Sbjct: 162 GYVNNALMLFRNLRRRGFVPEVLTYNAMINGLCKARRLADARRVLNEFCDFGFEPNAITY 221

Query: 548 NIMIDCCSIIRCFKSASAL--VSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLV 605
             ++ CC   RC +    L  +S M R GF      Y  ++  L+  G  +EA  + + +
Sbjct: 222 TTVMKCC--FRCGRLEQGLEILSEMRRKGFTFDGFAYCTVVAALVKTGRIEEADEIAEKM 279

Query: 606 SLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFH 665
              G+  D+  YNT++   C +GR D    +++++ +  ++ D  T   +  G    G  
Sbjct: 280 MSNGLVPDLASYNTMINLFCRQGRFDEALRLVDEIEKQGMKCDQYTHTIIIHGLCKDGNF 339

Query: 666 NSAMEALQVLS 676
             A + L  ++
Sbjct: 340 EGAEKHLDYMN 350



 Score = 55.8 bits (133), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 67/305 (21%), Positives = 128/305 (41%), Gaps = 53/305 (17%)

Query: 421 MRQKLRPDIRTYELL---FSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSH 477
           ++  L PDI TY  L   +  F  ++A Y   N+ +++  A     I  D+   N   S 
Sbjct: 34  IKLGLNPDIITYNTLIDGYCRFVGIDAAY---NILNRMKEA----GINPDVVSYNSLSSG 86

Query: 478 ISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKT 537
              K LL+   +  +  E++Q    S       +YN ++H      +   A  +F+ +  
Sbjct: 87  AVRKCLLQK--SLDLFDEMLQ----SGIRPDVWSYNILMHCYFRLGKPEEANGVFRDIFE 140

Query: 538 CG-IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI---------- 586
            G I P+ A+YN+MI+         +A  L   + R GF P+ +TY A+I          
Sbjct: 141 RGEIYPSMASYNVMINGLCKNGYVNNALMLFRNLRRRGFVPEVLTYNAMINGLCKARRLA 200

Query: 587 ---KILLDYGDF----------------------DEALNLLDLVSLEGIPHDVLLYNTIL 621
              ++L ++ DF                      ++ L +L  +  +G   D   Y T++
Sbjct: 201 DARRVLNEFCDFGFEPNAITYTTVMKCCFRCGRLEQGLEILSEMRRKGFTFDGFAYCTVV 260

Query: 622 KKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEAL-QVLSMRML 680
               + GRI+  + I E+M  N + PD ++ + + + +   G  + A+  + ++    M 
Sbjct: 261 AALVKTGRIEEADEIAEKMMSNGLVPDLASYNTMINLFCRQGRFDEALRLVDEIEKQGMK 320

Query: 681 CEEVS 685
           C++ +
Sbjct: 321 CDQYT 325



 Score = 54.3 bits (129), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 108/487 (22%), Positives = 194/487 (39%), Gaps = 56/487 (11%)

Query: 120 LNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANL 179
           L+ K   + +  +CK   + +A  ++   G + G+ P +  YN+ +    +   +  A  
Sbjct: 5   LSTKFMNITISTMCKSNQIAKAETVL-IDGIKLGLNPDIITYNTLIDGYCRFVGIDAAYN 63

Query: 180 CLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTR 239
            L+ M    +  + V+Y  L   AV +  L    +++++ ++        +R  VWS   
Sbjct: 64  ILNRMKEAGINPDVVSYNSLSSGAVRKCLLQKSLDLFDEMLQS------GIRPDVWS--- 114

Query: 240 LRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDV 299
                  Y  L H      +GK      + G  R    DI       P M     S++ +
Sbjct: 115 -------YNILMH--CYFRLGK---PEEANGVFR----DIFERGEIYPSMA----SYNVM 154

Query: 300 IHACGRTQNSGLAEQLML--QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQN 357
           I+  G  +N  +   LML   ++  G  P   TY+  I  +   R L +   VL      
Sbjct: 155 IN--GLCKNGYVNNALMLFRNLRRRGFVPEVLTYNAMINGLCKARRLADARRVLNEFCDF 212

Query: 358 NLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKPERA 414
             +P   T  T+   C +   L+    +L ++ R     +   +   +AA     + E A
Sbjct: 213 GFEPNAITYTTVMKCCFRCGRLEQGLEILSEMRRKGFTFDGFAYCTVVAALVKTGRIEEA 272

Query: 415 IKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKR-INAIEMDMARNN 472
            +I  KM    L PD+ +Y  + +LF        +G    + D A R ++ IE    + +
Sbjct: 273 DEIAEKMMSNGLVPDLASYNTMINLF------CRQG----RFDEALRLVDEIEKQGMKCD 322

Query: 473 IQHSH-ISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEI 531
            Q++H I +  L K    EG  + L  Y            +N++L  L +A +  +A+++
Sbjct: 323 -QYTHTIIIHGLCKDGNFEGAEKHL-DYMNTLGFGFNLVAFNSILDCLGKAGDIDKAVKV 380

Query: 532 FKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLD 591
           F  M+      ++ TY  ++      + F+ AS L+   + DGF     T  A+I  L  
Sbjct: 381 FDSMEV----KDSFTYTSLLHNLCRAKKFRIASKLLVASIEDGFQILRATQRAVIDGLTT 436

Query: 592 YGDFDEA 598
            G   EA
Sbjct: 437 SGLVYEA 443



 Score = 45.8 bits (107), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 38/183 (20%), Positives = 79/183 (43%), Gaps = 1/183 (0%)

Query: 505 TPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSAS 564
           T L T   N  + ++ ++ +  +A  +       G+ P+  TYN +ID         +A 
Sbjct: 3   TRLSTKFMNITISTMCKSNQIAKAETVLIDGIKLGLNPDIITYNTLIDGYCRFVGIDAAY 62

Query: 565 ALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKA 624
            +++ M   G  P  ++Y +L    +      ++L+L D +   GI  DV  YN ++   
Sbjct: 63  NILNRMKEAGINPDVVSYNSLSSGAVRKCLLQKSLDLFDEMLQSGIRPDVWSYNILMHCY 122

Query: 625 CEKGRIDVIEFIIEQM-HQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEE 683
              G+ +    +   +  + ++ P  ++ + + +G    G+ N+A+   + L  R    E
Sbjct: 123 FRLGKPEEANGVFRDIFERGEIYPSMASYNVMINGLCKNGYVNNALMLFRNLRRRGFVPE 182

Query: 684 VST 686
           V T
Sbjct: 183 VLT 185



 Score = 42.7 bits (99), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 57/241 (23%), Positives = 97/241 (40%), Gaps = 8/241 (3%)

Query: 91  FHILNYCA-RSPDPLFVMETWR-MMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFL 148
           ++IL +C  R   P      +R + E  EI  +   Y +M+  LCK GY+  A  L   L
Sbjct: 115 YNILMHCYFRLGKPEEANGVFRDIFERGEIYPSMASYNVMINGLCKNGYVNNALMLFRNL 174

Query: 149 GERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKN 208
             R G  P +  YN+ +    K   +  A   L+         N +TYT ++K       
Sbjct: 175 -RRRGFVPEVLTYNAMINGLCKARRLADARRVLNEFCDFGFEPNAITYTTVMKCCFRCGR 233

Query: 209 LSAVHEIWEDY-IKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRT 267
           L    EI  +   K ++   F+    V +  +   ++ A E  + M++  ++  L    T
Sbjct: 234 LEQGLEILSEMRRKGFTFDGFAYCTVVAALVKTGRIEEADEIAEKMMSNGLVPDLASYNT 293

Query: 268 SEGRL-RSSRLDIPIPLN---ALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLG 323
                 R  R D  + L        MK  +++ + +IH   +  N   AE+ +  M +LG
Sbjct: 294 MINLFCRQGRFDEALRLVDEIEKQGMKCDQYTHTIIIHGLCKDGNFEGAEKHLDYMNTLG 353

Query: 324 L 324
            
Sbjct: 354 F 354


>gi|357436823|ref|XP_003588687.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477735|gb|AES58938.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 587

 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 103/220 (46%), Gaps = 19/220 (8%)

Query: 483 LLKALGAEGMIRELIQYFCDSK-TPLG-TPT---YNTVLHSLVEAQESHRAMEIFKQMKT 537
           L+ +L  EG  RE  +Y    K T LG  P+   YN +L+    A++   A  ++++MK 
Sbjct: 223 LIDSLCKEGSAREASEYLLRRKETDLGWVPSIRVYNIMLNGWFRARKLKHAERLWEEMKN 282

Query: 538 CGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDE 597
             + P+  TY  +++    +R  + A  +V  M ++G  P  + Y  +I  L + G F E
Sbjct: 283 ENVRPSVVTYGTLVEGYCRMRRVEKALEMVGEMTKEGIKPNAIVYNPIIDALAEAGRFKE 342

Query: 598 ALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFS 657
           AL +++   +  I   +  YN+++K  C+ G I+    I+++M      P P+T ++ F 
Sbjct: 343 ALGMMERFHVLQIGPTLSTYNSLVKGFCKAGDIEGASKILKKMISRGFLPIPTTYNYFFR 402

Query: 658 GYVNCGFHNSAMEALQV--------------LSMRMLCEE 683
            +  CG  +  M                   L ++MLCEE
Sbjct: 403 YFSRCGKVDEGMNLYTKMIESGHNPDRLTYHLVLKMLCEE 442



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 83/190 (43%), Gaps = 26/190 (13%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
            YN ++ +L EA     A+ + ++     I P  +TYN ++         + AS ++  M
Sbjct: 326 VYNPIIDALAEAGRFKEALGMMERFHVLQIGPTLSTYNSLVKGFCKAGDIEGASKILKKM 385

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           +  GF P   TY    +     G  DE +NL   +   G   D L Y+ +LK  CE+ ++
Sbjct: 386 ISRGFLPIPTTYNYFFRYFSRCGKVDEGMNLYTKMIESGHNPDRLTYHLVLKMLCEEEKL 445

Query: 631 DV-IEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAME-ALQVLSMRMLCEEVSTLE 688
           ++ ++  +E  H+               GY         M+ A   +   +LC ++  LE
Sbjct: 446 ELAVQVSMEMRHK---------------GY--------DMDLATSTMLTHLLC-KMHKLE 481

Query: 689 EKRSDFEDLI 698
           E  ++FED+I
Sbjct: 482 EAFAEFEDMI 491


>gi|357145546|ref|XP_003573680.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Brachypodium distachyon]
          Length = 739

 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 115/569 (20%), Positives = 219/569 (38%), Gaps = 42/569 (7%)

Query: 107 METWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIY-FLGERYGIYPILPVYNSFL 165
           M  +  M+      +   Y  M+  LC  G   EA  L+   + E  G  P + VYN+ +
Sbjct: 162 MSVFAGMQADGCAPDPHVYATMVHGLCGAGRTREAETLLSDAMAE--GFEPNVVVYNALI 219

Query: 166 GACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSL 225
                +  +  A    + MD      N  TYTEL+      + L     ++   +    +
Sbjct: 220 DGYCNVGDLELAVDVFERMDVNGCSPNVRTYTELISGFCKSRKLDRAMMLFSRMVDAGLV 279

Query: 226 -SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYI-----------NRTSEGRLR 273
            ++ +    +        L  AY  LQ M    ++   +             R  E +L 
Sbjct: 280 PNVVTYTALIQGQCSDGQLDCAYRLLQSMENSGLVPNEWTCSVLIDALCKHERVGEAQLL 339

Query: 274 SSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDG 333
              L        + V +++  S  D +   GR      A++LM  + S G  P +HTY  
Sbjct: 340 LGSL----IQKGIKVNEIVYTSLIDGLCKAGRF---AAADRLMQTLVSQGFVPDAHTYSS 392

Query: 334 FIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRC 392
            I  +   + L   M VL  M +  ++P   T   +  E  + +  D ++ +LD+ I+  
Sbjct: 393 LIDGLCRQKELSEAMLVLDDMMEKGVQPSPVTYTIIIDELVREVGADGSKKILDKMIAAG 452

Query: 393 TNPKPFS--AFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEG 449
             P  F+   F+ +     + E A  +   M    + P++ TY  L   + N+    +  
Sbjct: 453 IKPDVFTYTIFVRSYCHEGRMEDAEHMMLHMVDHGVCPNLVTYNALICGYANLGLTSQAF 512

Query: 450 NMFSQ-VDSAKRINAIEMDM---------ARNNIQHSHISMKNLLKALGAEGMIRELIQY 499
           + F   V +  + N     +         + NNI  + +S+  + +     G++ E+++ 
Sbjct: 513 STFKHMVANGCKPNEESYTVLLRLLIKKESSNNIPANSVSIWKIAEMKYLHGLLEEMVKL 572

Query: 500 FCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRC 559
               + P     YN  L SL        A  +  +M++  + P+   Y  +I CC  ++ 
Sbjct: 573 ----QLPSEIDIYNCFLTSLCRVDRLDEAKILLIEMQSANLTPSEDVYTSIIACCCRLKM 628

Query: 560 FKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL-DLVSLEGIPHDVLLYN 618
              A   V  MV+ G+ PQ  +Y  +I  L + G    A  +  D++S E   ++ + + 
Sbjct: 629 LTEALTFVDSMVKSGYIPQLESYRHIISSLCEEGSIQTAKQVFGDMLSKE-YNYEEIAWR 687

Query: 619 TILKKACEKGRIDVIEFIIEQMHQNKVQP 647
            ++    +KG +     ++  M +   +P
Sbjct: 688 ILIDGLLQKGYVAECSSLLSVMEEKNYRP 716



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 88/391 (22%), Positives = 157/391 (40%), Gaps = 29/391 (7%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A +L + M   G   ++ TY   +  +     +R  M V   MQ +   P     AT+  
Sbjct: 126 ACRLFVLMPLRGCVRTAFTYTALLHGLCGAGMVREAMSVFAGMQADGCAPDPHVYATMVH 185

Query: 372 ECSKALELDLAEALL-DQISRCTNPKP--FSAFLAACDTMDKPERAIKIFAKMR-QKLRP 427
               A     AE LL D ++    P    ++A +     +   E A+ +F +M      P
Sbjct: 186 GLCGAGRTREAETLLSDAMAEGFEPNVVVYNALIDGYCNVGDLELAVDVFERMDVNGCSP 245

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMK---NLL 484
           ++RTY  L S F           +FS++  A  +  +    A    Q S   +     LL
Sbjct: 246 NVRTYTELISGFCKSRKLDRAMMLFSRMVDAGLVPNVVTYTALIQGQCSDGQLDCAYRLL 305

Query: 485 KALGAEGMIRE------LIQYFC------DSKTPLGT----------PTYNTVLHSLVEA 522
           +++   G++        LI   C      +++  LG+            Y +++  L +A
Sbjct: 306 QSMENSGLVPNEWTCSVLIDALCKHERVGEAQLLLGSLIQKGIKVNEIVYTSLIDGLCKA 365

Query: 523 QESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTY 582
                A  + + + + G  P+A TY+ +ID     +    A  ++  M+  G  P  +TY
Sbjct: 366 GRFAAADRLMQTLVSQGFVPDAHTYSSLIDGLCRQKELSEAMLVLDDMMEKGVQPSPVTY 425

Query: 583 TALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642
           T +I  L+     D +  +LD +   GI  DV  Y   ++  C +GR++  E ++  M  
Sbjct: 426 TIIIDELVREVGADGSKKILDKMIAAGIKPDVFTYTIFVRSYCHEGRMEDAEHMMLHMVD 485

Query: 643 NKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           + V P+  T + +  GY N G  + A    +
Sbjct: 486 HGVCPNLVTYNALICGYANLGLTSQAFSTFK 516



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 77/197 (39%), Gaps = 3/197 (1%)

Query: 482 NLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTC 538
            ++  L   G  RE      D+      P    YN ++       +   A+++F++M   
Sbjct: 182 TMVHGLCGAGRTREAETLLSDAMAEGFEPNVVVYNALIDGYCNVGDLELAVDVFERMDVN 241

Query: 539 GIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEA 598
           G  PN  TY  +I      R    A  L S MV  G  P  +TYTALI+     G  D A
Sbjct: 242 GCSPNVRTYTELISGFCKSRKLDRAMMLFSRMVDAGLVPNVVTYTALIQGQCSDGQLDCA 301

Query: 599 LNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
             LL  +   G+  +    + ++   C+  R+   + ++  + Q  ++ +      +  G
Sbjct: 302 YRLLQSMENSGLVPNEWTCSVLIDALCKHERVGEAQLLLGSLIQKGIKVNEIVYTSLIDG 361

Query: 659 YVNCGFHNSAMEALQVL 675
               G   +A   +Q L
Sbjct: 362 LCKAGRFAAADRLMQTL 378



 Score = 44.7 bits (104), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 39/184 (21%), Positives = 70/184 (38%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TY T++++   A +   +      +   G  P++  Y   +           A  L  +M
Sbjct: 74  TYTTLINAYCLAGDLPASKRHLSSLLRAGFAPDSHAYTSFVVGYCRAGLLAHACRLFVLM 133

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
              G      TYTAL+  L   G   EA+++   +  +G   D  +Y T++   C  GR 
Sbjct: 134 PLRGCVRTAFTYTALLHGLCGAGMVREAMSVFAGMQADGCAPDPHVYATMVHGLCGAGRT 193

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEK 690
              E ++        +P+    + +  GY N G    A++  + + +      V T  E 
Sbjct: 194 REAETLLSDAMAEGFEPNVVVYNALIDGYCNVGDLELAVDVFERMDVNGCSPNVRTYTEL 253

Query: 691 RSDF 694
            S F
Sbjct: 254 ISGF 257



 Score = 41.6 bits (96), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 31/148 (20%), Positives = 54/148 (36%)

Query: 516 LHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGF 575
           L++ + A   HR +   +   +     N  TY  +I+   +     ++   +S ++R GF
Sbjct: 44  LNAFLMALARHRMLADMESFASRMPARNLRTYTTLINAYCLAGDLPASKRHLSSLLRAGF 103

Query: 576 YPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEF 635
            P +  YT+ +      G    A  L  L+ L G       Y  +L   C  G +     
Sbjct: 104 APDSHAYTSFVVGYCRAGLLAHACRLFVLMPLRGCVRTAFTYTALLHGLCGAGMVREAMS 163

Query: 636 IIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
           +   M  +   PDP     +  G    G
Sbjct: 164 VFAGMQADGCAPDPHVYATMVHGLCGAG 191


>gi|242062936|ref|XP_002452757.1| hypothetical protein SORBIDRAFT_04g031880 [Sorghum bicolor]
 gi|241932588|gb|EES05733.1| hypothetical protein SORBIDRAFT_04g031880 [Sorghum bicolor]
          Length = 502

 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/290 (24%), Positives = 120/290 (41%), Gaps = 23/290 (7%)

Query: 398 FSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDS 457
           F++ L A        +A  +   + ++  PD  TY  L              + + +V  
Sbjct: 179 FNSLLDALVKSRHAGKAASLVRALERRFPPDAVTYNTL-------------ADGWCRVKD 225

Query: 458 AKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFC--------DSKTPLGT 509
             R   I   M  + I  +  +   +LK     G ++    +F         D       
Sbjct: 226 TSRALDILRQMVESGIAPTKTTYNIILKGFFRSGQLQHAWDFFLQMKKRGSNDENCKPDV 285

Query: 510 PTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSM 569
            +Y TVLH L  A +  +A ++F +M   G  P+ ATYN +I         + A A+   
Sbjct: 286 VSYTTVLHGLGVAGQLDKARKVFDEMSREGCTPSIATYNALIQVTCKKGNVEDAVAVFDD 345

Query: 570 MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
           M+R G+ P  +TYT LI+ L   G  D A+ LLD +  EG   +V  YN ++    E+G 
Sbjct: 346 MIRKGYIPNVVTYTVLIRGLCHAGKIDRAMKLLDKMKREGCEPNVQTYNVLIGYLFEEGD 405

Query: 630 IDVIEFIIEQMHQN-KVQPDPSTCHFVFSG-YVNCGFHNSAMEALQVLSM 677
           I+    + E M +  +  P+  T + + S  +V     + A+ A  V+ M
Sbjct: 406 IEKALHLFETMSKGEECLPNQDTYNIIISAMFVRKRAEDMAVAARMVVEM 455


>gi|226505250|ref|NP_001147833.1| GTP binding protein [Zea mays]
 gi|195614010|gb|ACG28835.1| GTP binding protein [Zea mays]
 gi|413952711|gb|AFW85360.1| GTP binding protein [Zea mays]
          Length = 547

 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 79/365 (21%), Positives = 158/365 (43%), Gaps = 30/365 (8%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
            F ++I A G+ +   L   L+  M+  GL  S  T+   +R     R ++  +E  + M
Sbjct: 163 GFHNLIEALGKIKQFRLVWSLVETMRCRGLL-SKDTFKLIVRRYARARKVKEAVETFEKM 221

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR----CTNPKPFSAFLAACDTMDK 410
               LK + S    L    SK+ ++  A+A+  ++ R      + K ++  +        
Sbjct: 222 SIFGLKTELSDYNWLIDTLSKSKQVKKAQAIYKEMKRKGKFVPDLKTYTVLMEGWGH--- 278

Query: 411 PERAIKIFAKMRQKL-----RPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIE 465
            E+ + +   M Q++     RPD+  Y +L S F       E   +F +++         
Sbjct: 279 -EKDLLMVKTMYQEMIDAGIRPDVVAYGMLISAFCKSGKCDEAIKVFYEME--------- 328

Query: 466 MDMARNNIQHSHISMKNLLKALGAEGMIRELIQYF---CDSKTPLGTPTYNTVLHSLVEA 522
              A   +   H+    L+  LG+E  + E ++YF     S  P+  PT N V+ +   A
Sbjct: 329 ---ASGCMPSPHVYCM-LINGLGSEERLDEALKYFEHYKKSGFPMEVPTCNAVVGAYCRA 384

Query: 523 QESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTY 582
            +   A ++  +M+ C + PN+ TY++++      + F+ A  +   M  DG  PQ  TY
Sbjct: 385 SKFQHAFKMVDEMRKCKVGPNSRTYDVILHYLIKSQKFEEAYNIFQRMGIDGCEPQLNTY 444

Query: 583 TALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642
           T ++ +    G  D AL +   +  +G+   + +++ ++   C + R++      ++M  
Sbjct: 445 TMMVGMFCSNGRVDMALKVWKQMGEKGVLPCMHMFSALINGLCFENRLEEACVYFQEMLD 504

Query: 643 NKVQP 647
             ++P
Sbjct: 505 KGIRP 509



 Score = 44.7 bits (104), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 31/142 (21%), Positives = 56/142 (39%), Gaps = 2/142 (1%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC-CSIIRCFKSASALVSM 569
           TY  ++      ++      ++++M   GI P+   Y ++I   C   +C ++      M
Sbjct: 268 TYTVLMEGWGHEKDLLMVKTMYQEMIDAGIRPDVVAYGMLISAFCKSGKCDEAIKVFYEM 327

Query: 570 MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
               G  P    Y  LI  L      DEAL   +     G P +V   N ++   C   +
Sbjct: 328 EA-SGCMPSPHVYCMLINGLGSEERLDEALKYFEHYKKSGFPMEVPTCNAVVGAYCRASK 386

Query: 630 IDVIEFIIEQMHQNKVQPDPST 651
                 ++++M + KV P+  T
Sbjct: 387 FQHAFKMVDEMRKCKVGPNSRT 408



 Score = 43.9 bits (102), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 31/149 (20%), Positives = 62/149 (41%), Gaps = 1/149 (0%)

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCG-IPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           YN ++ +L ++++  +A  I+K+MK  G   P+  TY ++++     +       +   M
Sbjct: 233 YNWLIDTLSKSKQVKKAQAIYKEMKRKGKFVPDLKTYTVLMEGWGHEKDLLMVKTMYQEM 292

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           +  G  P  + Y  LI      G  DEA+ +   +   G      +Y  ++     + R+
Sbjct: 293 IDAGIRPDVVAYGMLISAFCKSGKCDEAIKVFYEMEASGCMPSPHVYCMLINGLGSEERL 352

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
           D      E   ++    +  TC+ V   Y
Sbjct: 353 DEALKYFEHYKKSGFPMEVPTCNAVVGAY 381


>gi|302784232|ref|XP_002973888.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
 gi|300158220|gb|EFJ24843.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
          Length = 399

 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 78/325 (24%), Positives = 131/325 (40%), Gaps = 31/325 (9%)

Query: 320 QSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALEL 379
           Q  G+ P+   Y+ F+ A+     +   MEV+K M+    KP   T  TL     KA  L
Sbjct: 46  QQPGMAPTPSMYNFFVHALCKSGKVPEAMEVVKNMKDGACKPDVVTFNTLIAGLCKAGRL 105

Query: 380 DLAEALLDQISR---CTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLF 436
           D A+ +LD++ R     N   ++  +    +  +   A+ +   M     PD +TY  + 
Sbjct: 106 DEAQQVLDEMERSGFAANLVTYNTLINGLSSAGRSGEAVLVMQGMTTT--PDTQTYNAII 163

Query: 437 SLF---GNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMI 493
             F   G ++  Y                 +E    R        +   L+  L     +
Sbjct: 164 HGFCKSGEIDRAY---------------GFLEEMKQRAGCSPDTFTYSILINGLCKSSNL 208

Query: 494 R---ELIQYFCDSKTPLGTPT-YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNI 549
           R   EL+Q     K    +   +NT++    +AQ+  RA E+   M   G  P+  TY+ 
Sbjct: 209 RKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYST 268

Query: 550 MIDCCSIIRC--FKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSL 607
           +ID   + RC       AL+  MV  G  P  +TYT L+  L   G   EA  L+  +  
Sbjct: 269 IID--GLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLE 326

Query: 608 EGIPHDVLLYNTILKKACEKGRIDV 632
           +G   + + Y+ +    C+  ++D+
Sbjct: 327 DGCTPNAVTYSLVFDGLCKIDKLDM 351



 Score = 82.4 bits (202), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 73/319 (22%), Positives = 133/319 (41%), Gaps = 53/319 (16%)

Query: 379 LDLAEALLDQISRCTNPKPFSAFL-AACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLF 436
           +DL   +  Q      P  ++ F+ A C +   PE A+++   M+    +PD+ T+  L 
Sbjct: 38  MDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPE-AMEVVKNMKDGACKPDVVTFNTLI 96

Query: 437 SLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIREL 496
           +  G   A         ++D A+++     +M R+    + ++   L+  L + G   E 
Sbjct: 97  A--GLCKA--------GRLDEAQQVLD---EMERSGFAANLVTYNTLINGLSSAGRSGEA 143

Query: 497 IQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKT-CGIPPNAATYNIMI---- 551
           +       T   T TYN ++H   ++ E  RA    ++MK   G  P+  TY+I+I    
Sbjct: 144 VLVMQGMTTTPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLC 203

Query: 552 -------------------DCCSIIRCFKS-------------ASALVSMMVRDGFYPQT 579
                              DCC+ +  F +             A  L+S M+  G  P  
Sbjct: 204 KSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDV 263

Query: 580 MTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQ 639
           +TY+ +I  L   GD D+   LL+ +   G   DV+ Y  ++   C+ G++     ++++
Sbjct: 264 VTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKR 323

Query: 640 MHQNKVQPDPSTCHFVFSG 658
           M ++   P+  T   VF G
Sbjct: 324 MLEDGCTPNAVTYSLVFDG 342



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 78/178 (43%), Gaps = 5/178 (2%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI-DCCSIIRCFKSASALVSM 569
           TYNT+++ L  A  S  A+ + + M T    P+  TYN +I   C      ++   L  M
Sbjct: 126 TYNTLINGLSSAGRSGEAVLVMQGMTT---TPDTQTYNAIIHGFCKSGEIDRAYGFLEEM 182

Query: 570 MVRDGFYPQTMTYTALIKILLDYGDFDEALNLL-DLVSLEGIPHDVLLYNTILKKACEKG 628
             R G  P T TY+ LI  L    +  +A  LL +++  +     V+ +NT++   C+  
Sbjct: 183 KQRAGCSPDTFTYSILINGLCKSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQ 242

Query: 629 RIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
            +D    ++  M ++   PD  T   +  G   CG  +     L+ +  R    +V T
Sbjct: 243 DLDRARELLSSMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVT 300



 Score = 38.9 bits (89), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 21/103 (20%), Positives = 48/103 (46%)

Query: 574 GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVI 633
           G  P    Y   +  L   G   EA+ ++  +       DV+ +NT++   C+ GR+D  
Sbjct: 49  GMAPTPSMYNFFVHALCKSGKVPEAMEVVKNMKDGACKPDVVTFNTLIAGLCKAGRLDEA 108

Query: 634 EFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
           + ++++M ++    +  T + + +G  + G    A+  +Q ++
Sbjct: 109 QQVLDEMERSGFAANLVTYNTLINGLSSAGRSGEAVLVMQGMT 151


>gi|413955492|gb|AFW88141.1| hypothetical protein ZEAMMB73_138069 [Zea mays]
          Length = 1091

 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 123/597 (20%), Positives = 238/597 (39%), Gaps = 72/597 (12%)

Query: 85  LGADDFFHILNYCARSPDPLFVME--TWRMMEEKEIGLNNKC-YLL-MMQALCKGGYLEE 140
           +G D   H+L     +PDP   +E  T    +  ++     C Y+L +M+A  + G + +
Sbjct: 66  VGTDSVVHMLR---SAPDPAEALELFTAAARQPTKVHTTESCNYMLELMRAHGRVGDMAQ 122

Query: 141 ASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELL 200
             +L+    ++  +   +  + +  G       +  A + L +M    +  N  TY  L+
Sbjct: 123 VFDLM----QKQVVKTNVGTFATIFGGVGVEGGLRSAPVALPVMREAGMSLNAYTYNGLI 178

Query: 201 KLAVWQKNLSAVHEIWEDYIKH-YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMM 259
              V     +   E+++  ++   S S+ +    + +F + RD+ +    L  M A  + 
Sbjct: 179 YFLVKSGFDAEAMEVYKAMVEDGISPSVRTYSVLMVAFGKKRDVDTVLWLLNEMEARGVK 238

Query: 260 GKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQM 319
             +Y                               S++  I   G+      A  ++ +M
Sbjct: 239 PNVY-------------------------------SYTICIRVLGQAARFDEAYHILGKM 267

Query: 320 QSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALE- 378
           +  G +P   T+   I+ +     L +   V   M+ ++ KP   T  TL  +C  + + 
Sbjct: 268 EDSGCKPDVVTHTVIIQVLCDAGRLSDAKAVFWKMKASDQKPDRVTYITLLDKCGDSGDS 327

Query: 379 ---LDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYEL 434
              +++  A++       N   ++A + A   + + + A+ +F +M++K + P+  +Y  
Sbjct: 328 QSVVEVWNAMVAD-GYNDNIVSYTAVVDALCQVGRVDEALAVFDEMKEKGMSPEQYSYNS 386

Query: 435 LFSLFGNVNAPYEEGNMFSQ-VDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMI 493
           L S F        + +MF + ++    +NA       +   ++H+   N     G  G  
Sbjct: 387 LISGF-------LKADMFDRALELFNHMNAC----GPSPNGYTHVLFINYY---GKSGQS 432

Query: 494 RELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIM 550
            + IQ +   K+    P     N VL+SL  +     A  +F ++K  G+ P+  TY +M
Sbjct: 433 LKAIQRYEHMKSKGIVPDVAAANAVLYSLAGSGRLGMAKRVFYELKAMGVSPDTITYTMM 492

Query: 551 IDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGI 610
           I CCS       A    S MV  G  P  +   +LI  L   G  +EA  L   +    I
Sbjct: 493 IKCCSKASKADEAMNFFSDMVESGCVPDVLALNSLIDTLYKGGKGNEAWQLFHKLKEMKI 552

Query: 611 PHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVF-----SGYVNC 662
                 YNT+L     +G++  +  ++E+M +    P+  T + V      +G VNC
Sbjct: 553 EPTNGTYNTLLSGLGREGKVKEVMQLLEEMTRTIYPPNLITYNTVLDCLSKNGEVNC 609



 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 95/452 (21%), Positives = 183/452 (40%), Gaps = 67/452 (14%)

Query: 288 VMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNG 347
           V+K    +F+ +    G       A   +  M+  G+  +++TY+G I  +V        
Sbjct: 131 VVKTNVGTFATIFGGVGVEGGLRSAPVALPVMREAGMSLNAYTYNGLIYFLVKSGFDAEA 190

Query: 348 MEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI-SRCTNPKPFSAFLA--A 404
           MEV K M ++ + P   T + L V   K  ++D    LL+++ +R   P  +S  +    
Sbjct: 191 MEVYKAMVEDGISPSVRTYSVLMVAFGKKRDVDTVLWLLNEMEARGVKPNVYSYTICIRV 250

Query: 405 CDTMDKPERAIKIFAKMRQK-LRPDIRTYELLF-------------SLFGNVNAPYEEGN 450
                + + A  I  KM     +PD+ T+ ++              ++F  + A  ++ +
Sbjct: 251 LGQAARFDEAYHILGKMEDSGCKPDVVTHTVIIQVLCDAGRLSDAKAVFWKMKASDQKPD 310

Query: 451 MFSQV-------DSAKRINAIEM--DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFC 501
             + +       DS    + +E+   M  +    + +S   ++ AL   G + E +  F 
Sbjct: 311 RVTYITLLDKCGDSGDSQSVVEVWNAMVADGYNDNIVSYTAVVDALCQVGRVDEALAVFD 370

Query: 502 DSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID------ 552
           + K    +P   +YN+++   ++A    RA+E+F  M  CG  PN  T+ + I+      
Sbjct: 371 EMKEKGMSPEQYSYNSLISGFLKADMFDRALELFNHMNACGPSPNGYTHVLFINYYGKSG 430

Query: 553 -------------CCSIIRCFKSASALVSMMVRDG--------FY--------PQTMTYT 583
                           I+    +A+A++  +   G        FY        P T+TYT
Sbjct: 431 QSLKAIQRYEHMKSKGIVPDVAAANAVLYSLAGSGRLGMAKRVFYELKAMGVSPDTITYT 490

Query: 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
            +IK        DEA+N    +   G   DVL  N+++    + G+ +    +  ++ + 
Sbjct: 491 MMIKCCSKASKADEAMNFFSDMVESGCVPDVLALNSLIDTLYKGGKGNEAWQLFHKLKEM 550

Query: 644 KVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
           K++P   T + + SG    G      E +Q+L
Sbjct: 551 KIEPTNGTYNTLLSG---LGREGKVKEVMQLL 579



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 142/688 (20%), Positives = 258/688 (37%), Gaps = 119/688 (17%)

Query: 55  TQMQIVDALCRGER-SRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMM 113
           T   I+  LC   R S A  +   +  +        +  +L+ C  S D   V+E W  M
Sbjct: 278 THTVIIQVLCDAGRLSDAKAVFWKMKASDQKPDRVTYITLLDKCGDSGDSQSVVEVWNAM 337

Query: 114 EEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAK--- 170
                  N   Y  ++ ALC+ G ++EA  +   + E+ G+ P    YNS +    K   
Sbjct: 338 VADGYNDNIVSYTAVVDALCQVGRVDEALAVFDEMKEK-GMSPEQYSYNSLISGFLKADM 396

Query: 171 ----LHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKN---LSAVHEIWEDYIKHY 223
               L    H N C         G +   YT +L +  + K+   L A+        K  
Sbjct: 397 FDRALELFNHMNAC---------GPSPNGYTHVLFINYYGKSGQSLKAIQRYEHMKSKGI 447

Query: 224 SLSIFSLRKFVWSFT---RLRDLKSAYETLQHM------VALAMMGKLYINRTSEGRLRS 274
              + +    ++S     RL   K  +  L+ M      +   MM K   ++ S+     
Sbjct: 448 VPDVAAANAVLYSLAGSGRLGMAKRVFYELKAMGVSPDTITYTMMIKC-CSKASKADEAM 506

Query: 275 SRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGF 334
           +     +    +P +  L  S  D ++  G+      A QL  +++ + ++P++ TY+  
Sbjct: 507 NFFSDMVESGCVPDVLALN-SLIDTLYKGGKGNE---AWQLFHKLKEMKIEPTNGTYNTL 562

Query: 335 IRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTN 394
           +  +  +  ++  M++L+ M +    P   T  T+    SK  E++ A  +L  ++    
Sbjct: 563 LSGLGREGKVKEVMQLLEEMTRTIYPPNLITYNTVLDCLSKNGEVNCAIDMLYSMTEKGC 622

Query: 395 PKPFSAFLAACDTMDKPER---AIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNM 451
               S++      + K ER   A ++F +M++ L PD  T   +   F       + G M
Sbjct: 623 APDLSSYNTVMYGLIKEERLEEAFRMFCQMKKILAPDYATLCTILPSF------VKNGLM 676

Query: 452 FSQVDSAKRINAIEMDMARNNIQHS--HISMKNLLKALGAEGMIR--------------- 494
              + + K      +  A  N+  S  H  M+ +LK  G E  I                
Sbjct: 677 KEALHTVKEY----ILKAGCNVDKSSFHSLMEGILKKAGVEKSIEFAENIASRGILLNDF 732

Query: 495 ---ELIQYFCDSK----------------TPLGTPTYNTVLHSLVEAQESHRAMEIFKQM 535
               LI++ C  K                  L T +YN+++  LV+      A ++F +M
Sbjct: 733 FLCPLIRHLCKHKKALEAHQLFNKFKGLGVSLKTGSYNSLIRGLVDENLIDIAEDLFTEM 792

Query: 536 KTCGIPPNAATYNIMIDCCS-------------------IIRCFKSASALVSMMVR---- 572
           K  G  P+  TYN+++D                          + + + ++S +V+    
Sbjct: 793 KRLGCGPDEFTYNLILDAMGKSMRVEEMLKVQKEMHRKGYESTYVTYNTIISGLVKSKRL 852

Query: 573 ------------DGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTI 620
                       +GF P   TY  L+  LL  G   +A NL + +   G   +  +YN +
Sbjct: 853 EQAIDLYYNLMSEGFSPTPCTYGPLLDGLLKSGKMVDAENLFNEMLEYGCEPNCTIYNIL 912

Query: 621 LKKACEKGRIDVIEFIIEQMHQNKVQPD 648
           L      G  + +  + E+M +  + PD
Sbjct: 913 LNGHRIAGNTENVCQLFEKMVEQGINPD 940



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 73/335 (21%), Positives = 137/335 (40%), Gaps = 29/335 (8%)

Query: 349 EVLKIMQQNNLKPQDSTIATL--SVECSKAL-ELDLAEALLDQISRCTNPKPFSAFLAAC 405
           +V  +MQ+  +K    T AT+   V     L    +A  ++ +     N   ++  +   
Sbjct: 122 QVFDLMQKQVVKTNVGTFATIFGGVGVEGGLRSAPVALPVMREAGMSLNAYTYNGLIYFL 181

Query: 406 DTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAK-RINA 463
                   A++++  M +  + P +RTY +L   FG              VD+    +N 
Sbjct: 182 VKSGFDAEAMEVYKAMVEDGISPSVRTYSVLMVAFGKKR----------DVDTVLWLLNE 231

Query: 464 IEMDMARNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLV 520
           +E    + N+    I     ++ LG      E   ++    DS       T+  ++  L 
Sbjct: 232 MEARGVKPNVYSYTIC----IRVLGQAARFDEAYHILGKMEDSGCKPDVVTHTVIIQVLC 287

Query: 521 EAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTM 580
           +A     A  +F +MK     P+  TY  ++D C      +S   + + MV DG+    +
Sbjct: 288 DAGRLSDAKAVFWKMKASDQKPDRVTYITLLDKCGDSGDSQSVVEVWNAMVADGYNDNIV 347

Query: 581 TYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQM 640
           +YTA++  L   G  DEAL + D +  +G+  +   YN+++       + D+ +  +E  
Sbjct: 348 SYTAVVDALCQVGRVDEALAVFDEMKEKGMSPEQYSYNSLISGFL---KADMFDRALELF 404

Query: 641 -HQNKVQPDPST-CHFVFSGYVNCGFHNSAMEALQ 673
            H N   P P+   H +F  Y   G    +++A+Q
Sbjct: 405 NHMNACGPSPNGYTHVLFINYY--GKSGQSLKAIQ 437



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/191 (21%), Positives = 84/191 (43%), Gaps = 9/191 (4%)

Query: 464  IEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCD------SKTPLGTPTYNTVLH 517
            ++ +M R   + ++++   ++  L     + + I  + +      S TP    TY  +L 
Sbjct: 823  VQKEMHRKGYESTYVTYNTIISGLVKSKRLEQAIDLYYNLMSEGFSPTPC---TYGPLLD 879

Query: 518  SLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYP 577
             L+++ +   A  +F +M   G  PN   YNI+++   I    ++   L   MV  G  P
Sbjct: 880  GLLKSGKMVDAENLFNEMLEYGCEPNCTIYNILLNGHRIAGNTENVCQLFEKMVEQGINP 939

Query: 578  QTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFII 637
               +YT LI  L   G  ++ L     +   G+  D+++YN ++    +  RI+    + 
Sbjct: 940  DIKSYTILIDTLCTAGRLNDGLCYFRQLHELGLEPDLIVYNLLIDGLGKSERIEEAVSLF 999

Query: 638  EQMHQNKVQPD 648
             +M +  + P+
Sbjct: 1000 NEMKKKGIIPN 1010



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 105/524 (20%), Positives = 196/524 (37%), Gaps = 68/524 (12%)

Query: 112 MMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKL 171
           +M E  + LN   Y  ++  L K G+  EA  +   + E  GI P +  Y+  + A  K 
Sbjct: 161 VMREAGMSLNAYTYNGLIYFLVKSGFDAEAMEVYKAMVED-GISPSVRTYSVLMVAFGKK 219

Query: 172 HSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLR 231
             +      L+ M++R V  N  +YT  +++          + I                
Sbjct: 220 RDVDTVLWLLNEMEARGVKPNVYSYTICIRVLGQAARFDEAYHI---------------- 263

Query: 232 KFVWSFTRLRDLKSAYETLQHMVALAMM---GKLYINRTSEGRLRSSRLDIPIPLNALPV 288
                  ++ D     + + H V + ++   G+L   +    ++++S             
Sbjct: 264 -----LGKMEDSGCKPDVVTHTVIIQVLCDAGRLSDAKAVFWKMKASD------------ 306

Query: 289 MKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGM 348
            K  R ++  ++  CG + +S    ++   M + G   +  +Y   + A+     +   +
Sbjct: 307 QKPDRVTYITLLDKCGDSGDSQSVVEVWNAMVADGYNDNIVSYTAVVDALCQVGRVDEAL 366

Query: 349 EVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFS----AFLAA 404
            V   M++  + P+  +  +L     KA   D A  L + ++ C  P P       F+  
Sbjct: 367 AVFDEMKEKGMSPEQYSYNSLISGFLKADMFDRALELFNHMNAC-GPSPNGYTHVLFINY 425

Query: 405 CDTMDKPERAIKIFAKMRQK-LRPDIRTYE-LLFSLFGNVNAP------YEEGNMFSQVD 456
                +  +AI+ +  M+ K + PD+     +L+SL G+          YE   M    D
Sbjct: 426 YGKSGQSLKAIQRYEHMKSKGIVPDVAAANAVLYSLAGSGRLGMAKRVFYELKAMGVSPD 485

Query: 457 S----------AKRINAIEM-----DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFC 501
           +          +K   A E      DM  +      +++ +L+  L   G   E  Q F 
Sbjct: 486 TITYTMMIKCCSKASKADEAMNFFSDMVESGCVPDVLALNSLIDTLYKGGKGNEAWQLFH 545

Query: 502 DSKTPLGTPT---YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIR 558
             K     PT   YNT+L  L    +    M++ ++M     PPN  TYN ++DC S   
Sbjct: 546 KLKEMKIEPTNGTYNTLLSGLGREGKVKEVMQLLEEMTRTIYPPNLITYNTVLDCLSKNG 605

Query: 559 CFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL 602
               A  ++  M   G  P   +Y  ++  L+     +EA  + 
Sbjct: 606 EVNCAIDMLYSMTEKGCAPDLSSYNTVMYGLIKEERLEEAFRMF 649



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 63/302 (20%), Positives = 123/302 (40%), Gaps = 26/302 (8%)

Query: 294  WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
            ++++ ++ A G++       ++  +M   G + +  TY+  I  +V  + L   +++   
Sbjct: 802  FTYNLILDAMGKSMRVEEMLKVQKEMHRKGYESTYVTYNTIISGLVKSKRLEQAIDLYYN 861

Query: 354  MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI------SRCTNPKPFSAFLAACDT 407
            +      P   T   L     K+ ++  AE L +++        CT    ++  L     
Sbjct: 862  LMSEGFSPTPCTYGPLLDGLLKSGKMVDAENLFNEMLEYGCEPNCT---IYNILLNGHRI 918

Query: 408  MDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM 466
                E   ++F KM  Q + PDI++Y +L           +    F Q+        +E 
Sbjct: 919  AGNTENVCQLFEKMVEQGINPDIKSYTILIDTLCTAGRLNDGLCYFRQLHEL----GLEP 974

Query: 467  DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQ 523
            D+   N+         L+  LG    I E +  F + K     P   TYN+++  L +A 
Sbjct: 975  DLIVYNL---------LIDGLGKSERIEEAVSLFNEMKKKGIIPNLYTYNSLILHLGKAG 1025

Query: 524  ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
            ++  A ++++++   G  P+  TYN +I   S+     +A A    M+  G  P + TY 
Sbjct: 1026 KAAEAAQMYEELLRKGWKPSVFTYNALIRGYSVSGSTDNAYAAYGQMIVGGCQPNSSTYM 1085

Query: 584  AL 585
             L
Sbjct: 1086 QL 1087



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 70/298 (23%), Positives = 118/298 (39%), Gaps = 26/298 (8%)

Query: 311  LAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLS 370
            +AE L  +M+ LG  P   TY+  + A+     +    E+LK+ ++ + K  +ST  T +
Sbjct: 784  IAEDLFTEMKRLGCGPDEFTYNLILDAMGKSMRVE---EMLKVQKEMHRKGYESTYVTYN 840

Query: 371  VECSKALELDLAEALLD----QISRCTNPKP--FSAFLAACDTMDKPERAIKIFAKMRQ- 423
               S  ++    E  +D     +S   +P P  +   L       K   A  +F +M + 
Sbjct: 841  TIISGLVKSKRLEQAIDLYYNLMSEGFSPTPCTYGPLLDGLLKSGKMVDAENLFNEMLEY 900

Query: 424  KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNL 483
               P+   Y +L      +N     GN        + +  +   M    I     S   L
Sbjct: 901  GCEPNCTIYNIL------LNGHRIAGN-------TENVCQLFEKMVEQGINPDIKSYTIL 947

Query: 484  LKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGI 540
            +  L   G + + + YF         P    YN ++  L +++    A+ +F +MK  GI
Sbjct: 948  IDTLCTAGRLNDGLCYFRQLHELGLEPDLIVYNLLIDGLGKSERIEEAVSLFNEMKKKGI 1007

Query: 541  PPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEA 598
             PN  TYN +I           A+ +   ++R G+ P   TY ALI+     G  D A
Sbjct: 1008 IPNLYTYNSLILHLGKAGKAAEAAQMYEELLRKGWKPSVFTYNALIRGYSVSGSTDNA 1065



 Score = 50.1 bits (118), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 109/558 (19%), Positives = 220/558 (39%), Gaps = 27/558 (4%)

Query: 108  ETWRM---MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPI-LPVYNS 163
            E W++   ++E +I   N  Y  ++  L + G ++E   L+  +     IYP  L  YN+
Sbjct: 539  EAWQLFHKLKEMKIEPTNGTYNTLLSGLGREGKVKEVMQLLEEMTRT--IYPPNLITYNT 596

Query: 164  FLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHY 223
             L   +K   +  A   L  M  +    +  +Y  ++   + ++ L     ++    K  
Sbjct: 597  VLDCLSKNGEVNCAIDMLYSMTEKGCAPDLSSYNTVMYGLIKEERLEEAFRMFCQMKKIL 656

Query: 224  SLSIFSLRKFVWSFTRLRDLKSAYETLQHMV--ALAMMGKLYINRTSEGRLRSSRLDIPI 281
            +    +L   + SF +   +K A  T++  +  A   + K   +   EG L+ + ++  I
Sbjct: 657  APDYATLCTILPSFVKNGLMKEALHTVKEYILKAGCNVDKSSFHSLMEGILKKAGVEKSI 716

Query: 282  PL-NALPVMKVLRWSF---SDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRA 337
                 +    +L   F     + H C + + +  A QL  + + LG+   + +Y+  IR 
Sbjct: 717  EFAENIASRGILLNDFFLCPLIRHLC-KHKKALEAHQLFNKFKGLGVSLKTGSYNSLIRG 775

Query: 338  IVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP 397
            +V +  +    ++   M++    P + T   +     K++ ++    +  ++ R      
Sbjct: 776  LVDENLIDIAEDLFTEMKRLGCGPDEFTYNLILDAMGKSMRVEEMLKVQKEMHRKGYEST 835

Query: 398  FSAFLAACDTMDKPER---AIKIFAK-MRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFS 453
            +  +      + K +R   AI ++   M +   P   TY  L      ++   + G M  
Sbjct: 836  YVTYNTIISGLVKSKRLEQAIDLYYNLMSEGFSPTPCTYGPL------LDGLLKSGKM-- 887

Query: 454  QVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYN 513
             VD+    N +       N    +I + N  +  G    + +L +   +        +Y 
Sbjct: 888  -VDAENLFNEMLEYGCEPNCTIYNI-LLNGHRIAGNTENVCQLFEKMVEQGINPDIKSYT 945

Query: 514  TVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRD 573
             ++ +L  A   +  +  F+Q+   G+ P+   YN++ID        + A +L + M + 
Sbjct: 946  ILIDTLCTAGRLNDGLCYFRQLHELGLEPDLIVYNLLIDGLGKSERIEEAVSLFNEMKKK 1005

Query: 574  GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVI 633
            G  P   TY +LI  L   G   EA  + + +  +G    V  YN +++     G  D  
Sbjct: 1006 GIIPNLYTYNSLILHLGKAGKAAEAAQMYEELLRKGWKPSVFTYNALIRGYSVSGSTDNA 1065

Query: 634  EFIIEQMHQNKVQPDPST 651
                 QM     QP+ ST
Sbjct: 1066 YAAYGQMIVGGCQPNSST 1083


>gi|428179078|gb|EKX47950.1| hypothetical protein GUITHDRAFT_136922 [Guillardia theta CCMP2712]
          Length = 714

 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/356 (20%), Positives = 154/356 (43%), Gaps = 39/356 (10%)

Query: 315 LMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECS 374
           +ML+     + P   +++  + A        +G+ +L++M ++ ++    T +TL   C 
Sbjct: 142 VMLKRMREKVSPDIVSFNTALAACQRQCDWESGVAILEMMSEDQIERDVFTFSTLISLCD 201

Query: 375 KALELDLAEAL---LDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK------- 424
           +  + D A AL   +D  +   N   F+A +A C    K   A  + ++ RQ        
Sbjct: 202 RCGKYDEAFALKEEMDAKNVSPNIYTFNALIAVC----KNSLATSLMSRKRQNTLTIAQI 257

Query: 425 ---------LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQH 475
                    LRPDI TY  L  ++  +    E  ++  +++    I  +           
Sbjct: 258 LFAEAKAAGLRPDIVTYNSLLGVYMEMGKWKESYDILFEIEDQHVITDV----------- 306

Query: 476 SHISMKNLLKALGAE---GMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIF 532
             I+   L+          +  E+ +   + +      TYN+++ + + A    +A   F
Sbjct: 307 --ITYSTLISTFAKTRKYSLAIEMYEKMMERQVMPNVITYNSLIFACLRANNFSQAFAFF 364

Query: 533 KQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDY 592
             M+  GI PN  TY+ MI  C     + +A  L   M+R    P  MT++AL+ +    
Sbjct: 365 DDMQAQGISPNVVTYSTMIASCRSKDNWVTAFDLFLEMIRKEIPPDPMTFSALLSVCQHS 424

Query: 593 GDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
             +++A+++L+ +   GI  ++ +Y+ ++    + GR+D    I+++  ++ ++P+
Sbjct: 425 KQWEQAMDVLEWMQDAGIQLNIRMYSAVVHVCGQAGRLDDAFRILDECKRDGIKPN 480



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 95/532 (17%), Positives = 200/532 (37%), Gaps = 106/532 (19%)

Query: 142 SNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLK 201
           + +++   +  G+ P +  YNS LG   ++     +   L  ++ + V  + +TY+ L+ 
Sbjct: 255 AQILFAEAKAAGLRPDIVTYNSLLGVYMEMGKWKESYDILFEIEDQHVITDVITYSTLIS 314

Query: 202 LAVWQKNLSAVHEIWEDYIKHYSL-SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMG 260
                +  S   E++E  ++   + ++ +    +++  R  +   A+     M A  +  
Sbjct: 315 TFAKTRKYSLAIEMYEKMMERQVMPNVITYNSLIFACLRANNFSQAFAFFDDMQAQGISP 374

Query: 261 KLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQ 320
            +                                ++S +I +C    N   A  L L+M 
Sbjct: 375 NVV-------------------------------TYSTMIASCRSKDNWVTAFDLFLEMI 403

Query: 321 SLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELD 380
              + P   T+   +      +     M+VL+ MQ   ++      + +   C +A  LD
Sbjct: 404 RKEIPPDPMTFSALLSVCQHSKQWEQAMDVLEWMQDAGIQLNIRMYSAVVHVCGQAGRLD 463

Query: 381 LAEALLDQISRCTNPKP----FSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELL 435
            A  +LD+  R    KP    F+A + AC      +RA ++   M++  + P++ T+ +L
Sbjct: 464 DAFRILDECKR-DGIKPNVIMFTALIHACKVARDLDRAFRVLELMKEDHVTPNLVTFNVL 522

Query: 436 FS---LFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGM 492
                + GN    ++   +  +               R N+Q                  
Sbjct: 523 LGTCEVVGNSTCAFQVVGLLQEYG------------FRANLQ------------------ 552

Query: 493 IRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIM-- 550
                             T+NT++ + V + E  +A E++ QM+   I P+ +T+N +  
Sbjct: 553 ------------------TFNTLIKTCVRSHEWQKAFEVYSQMQLQRIRPSLSTFNALSM 594

Query: 551 -----------IDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEAL 599
                      ID    +R  K+   L+ M    G  P    Y +LI   +   ++ +A 
Sbjct: 595 AAEEGGDWRRAIDVMVDMR-IKTEKILIRMA---GHTPSVQAYNSLISACVKSSNYQKAF 650

Query: 600 NLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
           ++   +   G+  +++ YN I+     + ++  +  +I +M Q +V PD  T
Sbjct: 651 DVYKGMKTSGVRANIVTYNLIISILSGQRKLSEVLKVINEMKQEEVTPDSET 702



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 87/403 (21%), Positives = 171/403 (42%), Gaps = 58/403 (14%)

Query: 281 IPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVS 340
           I L++LP        F+  I A  R  +   A  ++  M+  G++P   +Y+  + A+  
Sbjct: 82  IKLSSLP--------FNACIRALERMGDWREAVAILNIMEKDGVEPDIVSYNTVLSALRH 133

Query: 341 DRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALL-----DQISRCTNP 395
              ++N   +LK M++  + P   +  T    C +  + +   A+L     DQI R  + 
Sbjct: 134 SPDIQNVFVMLKRMREK-VSPDIVSFNTALAACQRQCDWESGVAILEMMSEDQIER--DV 190

Query: 396 KPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQ 454
             FS  ++ CD   K + A  +  +M  K + P+I T+  L ++  N        ++ + 
Sbjct: 191 FTFSTLISLCDRCGKYDEAFALKEEMDAKNVSPNIYTFNALIAVCKN--------SLATS 242

Query: 455 VDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNT 514
           + S KR N + +              + L     A G+  +++             TYN+
Sbjct: 243 LMSRKRQNTLTI-------------AQILFAEAKAAGLRPDIV-------------TYNS 276

Query: 515 VLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDG 574
           +L   +E  +   + +I  +++   +  +  TY+ +I   +  R +  A  +   M+   
Sbjct: 277 LLGVYMEMGKWKESYDILFEIEDQHVITDVITYSTLISTFAKTRKYSLAIEMYEKMMERQ 336

Query: 575 FYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR-IDVI 633
             P  +TY +LI   L   +F +A    D +  +GI  +V+ Y+T++     K   +   
Sbjct: 337 VMPNVITYNSLIFACLRANNFSQAFAFFDDMQAQGISPNVVTYSTMIASCRSKDNWVTAF 396

Query: 634 EFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAME-ALQVL 675
           +  +E M + ++ PDP T    FS  ++   H+   E A+ VL
Sbjct: 397 DLFLE-MIRKEIPPDPMT----FSALLSVCQHSKQWEQAMDVL 434



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 87/386 (22%), Positives = 155/386 (40%), Gaps = 53/386 (13%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           ++FS +I  C R      A  L  +M +  + P+ +T++  I   V    L   +   K 
Sbjct: 191 FTFSTLISLCDRCGKYDEAFALKEEMDAKNVSPNIYTFNALI--AVCKNSLATSLMSRK- 247

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPER 413
            +QN L     TIA +    +KA  L              +   +++ L     M K + 
Sbjct: 248 -RQNTL-----TIAQILFAEAKAAGLR------------PDIVTYNSLLGVYMEMGKWKE 289

Query: 414 AIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM--DMAR 470
           +  I  ++  Q +  D+ TY  L S F                 + K   AIEM   M  
Sbjct: 290 SYDILFEIEDQHVITDVITYSTLISTFAK---------------TRKYSLAIEMYEKMME 334

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHR 527
             +  + I+  +L+ A        +   +F D +    +P   TY+T++ S         
Sbjct: 335 RQVMPNVITYNSLIFACLRANNFSQAFAFFDDMQAQGISPNVVTYSTMIASCRSKDNWVT 394

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A ++F +M    IPP+  T++ ++  C   + ++ A  ++  M   G       Y+A++ 
Sbjct: 395 AFDLFLEMIRKEIPPDPMTFSALLSVCQHSKQWEQAMDVLEWMQDAGIQLNIRMYSAVVH 454

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR-IDVIEFIIEQMHQNKVQ 646
           +    G  D+A  +LD    +GI  +V+++ T L  AC+  R +D    ++E M ++ V 
Sbjct: 455 VCGQAGRLDDAFRILDECKRDGIKPNVIMF-TALIHACKVARDLDRAFRVLELMKEDHVT 513

Query: 647 PD-------PSTCHFVFSGYVNCGFH 665
           P+         TC  V  G   C F 
Sbjct: 514 PNLVTFNVLLGTCEVV--GNSTCAFQ 537


>gi|147858101|emb|CAN78867.1| hypothetical protein VITISV_041982 [Vitis vinifera]
          Length = 962

 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 88/370 (23%), Positives = 164/370 (44%), Gaps = 22/370 (5%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A  L  QM + G+QPS  T++  I  +     +R    +L  + Q +L P   T  +L +
Sbjct: 224 ARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLIL 283

Query: 372 ECSKALELDLAEALLDQISR--C-TNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRP 427
              +   LDLA  + D++ +  C  N   +S  +       + + A+ +  +M +K + P
Sbjct: 284 GHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEP 343

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL 487
            + TY L  +    +    E   + +++   KR         R N+Q ++ ++ + L  L
Sbjct: 344 TVYTYTLPITALCAIEHEEEAIELVARMK--KR-------GCRPNVQ-TYTALISGLSRL 393

Query: 488 G----AEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPN 543
           G    A G+  ++++   +   P  T TYN +++ L        A++IF  M+  G   N
Sbjct: 394 GKLEVAIGLYHKMLK---EGLVP-NTVTYNALINELCVGGRFSTALKIFHWMEGHGSLAN 449

Query: 544 AATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLD 603
             TYN +I    +    + A  L   M++ G  P  +TY  LI   L  G+ + A  LLD
Sbjct: 450 TQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLD 509

Query: 604 LVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
           L+   G   D   YN ++    + G+++   F  ++M +  + P+P +   +  G+   G
Sbjct: 510 LMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTTLIDGHSKDG 569

Query: 664 FHNSAMEALQ 673
             + A+  L+
Sbjct: 570 KVDIALSLLE 579



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 80/365 (21%), Positives = 153/365 (41%), Gaps = 44/365 (12%)

Query: 315 LMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECS 374
           L  +M  +G  P+  TY+  I   ++   + N   +L +M++N  +P + T   L    S
Sbjct: 472 LFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFS 531

Query: 375 KALELDLAEALLDQISRC---TNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIR 430
           K  +L+ A     ++  C    NP  ++  +       K + A+ +  +M +    P++ 
Sbjct: 532 KWGKLESASFYFQEMVECGLNPNPVSYTTLIDGHSKDGKVDIALSLLERMEEMGCNPNVE 591

Query: 431 TYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAE 490
           +Y  +      +N   +E N FS+ +       I   MA   +  + I+   L+  L   
Sbjct: 592 SYNAV------INGLSKE-NRFSEAEK------ICDKMAEQGLLPNVITYTTLIDGLCRN 638

Query: 491 GMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATY 547
           G  +   + F D +     P   TY+++++ L +  ++  A  + K+M+  G+ P+  T+
Sbjct: 639 GRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTF 698

Query: 548 NIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK------ILLDYG-------- 593
             +ID   ++     A  L+  MV  G  P   TY+ L+K      +LL+          
Sbjct: 699 TSLIDGFVVLGRIDHAFLLLRRMVDVGCKPNYRTYSVLLKGLQKECLLLEEKVAVQHEAV 758

Query: 594 ----------DFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
                     +F+   NLL  +S  G    +  Y+T++   C KGR    E +++ M + 
Sbjct: 759 YSFSPHEKDVNFEIVSNLLARMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKER 818

Query: 644 KVQPD 648
              PD
Sbjct: 819 GFCPD 823



 Score = 72.4 bits (176), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 120/579 (20%), Positives = 230/579 (39%), Gaps = 42/579 (7%)

Query: 105 FVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVY--N 162
           F+    R++ ++     +   +LM++A C+    EE   +  FL E  G+     +Y  N
Sbjct: 153 FISMLNRLVRDRVFAPADHIRILMIKA-CRNE--EEIRRVADFLNEISGMGFGFSLYSCN 209

Query: 163 SFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH 222
           + L   AK   +  A      M +  +  + +T+  L+ + + +K      E+    I  
Sbjct: 210 TLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINI-LSKKGKVREAELILSQIFQ 268

Query: 223 YSLS--IFSLRKFVWSFTRLRDLKSAYETLQHMVALA------MMGKLYINRTSEGRLRS 274
           Y LS  +F+    +    R R+L  A+     MV             L     +EGR+  
Sbjct: 269 YDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDE 328

Query: 275 S--RLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYD 332
           +   L+  I     P +    ++++  I A    ++   A +L+ +M+  G +P+  TY 
Sbjct: 329 ALDMLEEMIEKGIEPTV----YTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYT 384

Query: 333 GFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEAL---LDQI 389
             I  +     L   + +   M +  L P   T   L  E         A  +   ++  
Sbjct: 385 ALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGH 444

Query: 390 SRCTNPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEE 448
               N + ++  +         E+A+ +F KM +    P + TY  L      +N    +
Sbjct: 445 GSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTL------INGYLTK 498

Query: 449 GNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLG 508
           GN    V++A R+  +   M  N  +    +   L+      G +     YF +      
Sbjct: 499 GN----VNNAARLLDL---MKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGL 551

Query: 509 TP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASA 565
            P   +Y T++    +  +   A+ + ++M+  G  PN  +YN +I+  S    F  A  
Sbjct: 552 NPNPVSYTTLIDGHSKDGKVDIALSLLERMEEMGCNPNVESYNAVINGLSKENRFSEAEK 611

Query: 566 LVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL-DLVSLEGIPHDVLLYNTILKKA 624
           +   M   G  P  +TYT LI  L   G    A  +  D+   + +P ++  Y++++   
Sbjct: 612 ICDKMAEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLP-NLYTYSSLIYGL 670

Query: 625 CEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
           C++G+ D  E ++++M +  + PD  T   +  G+V  G
Sbjct: 671 CQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLG 709



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 92/211 (43%), Gaps = 3/211 (1%)

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQE 524
           M +     + ++   L+  L  EG + E   +++   +        TY   + +L   + 
Sbjct: 301 MVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEH 360

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
              A+E+  +MK  G  PN  TY  +I   S +   + A  L   M+++G  P T+TY A
Sbjct: 361 EEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNA 420

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
           LI  L   G F  AL +   +   G   +   YN I+K  C  G I+    + E+M +  
Sbjct: 421 LINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMG 480

Query: 645 VQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
             P   T + + +GY+  G  N+A   L ++
Sbjct: 481 PLPTVVTYNTLINGYLTKGNVNNAARLLDLM 511



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 110/542 (20%), Positives = 208/542 (38%), Gaps = 70/542 (12%)

Query: 121 NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLC 180
           N + Y  +++ LC GG +E+A  L   +  + G  P +  YN+ +       ++ +A   
Sbjct: 449 NTQTYNEIIKGLCLGGDIEKAMVLFEKM-LKMGPLPTVVTYNTLINGYLTKGNVNNAARL 507

Query: 181 LDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRL 240
           LDLM       +E TY EL                                  V  F++ 
Sbjct: 508 LDLMKENGCEPDEWTYNEL----------------------------------VSGFSKW 533

Query: 241 RDLKSAYETLQHMVALAMM-GKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRW----- 294
             L+SA    Q MV   +    +      +G  +  ++DI + L  L  M+ +       
Sbjct: 534 GKLESASFYFQEMVECGLNPNPVSYTTLIDGHSKDGKVDIALSL--LERMEEMGCNPNVE 591

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           S++ VI+   +      AE++  +M   GL P+  TY   I  +  +   +   ++   M
Sbjct: 592 SYNAVINGLSKENRFSEAEKICDKMAEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDM 651

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKP 411
           ++    P   T ++L     +  + D AE LL ++ R     +   F++ +     + + 
Sbjct: 652 EKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRI 711

Query: 412 ERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           + A  +  +M     +P+ RTY +L           EE  +  Q ++    +  E D+  
Sbjct: 712 DHAFLLLRRMVDVGCKPNYRTYSVLLKGLQKECLLLEE-KVAVQHEAVYSFSPHEKDV-- 768

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAME 530
            N +     + NLL  +   G         C+        TY+T++  L      + A +
Sbjct: 769 -NFE----IVSNLLARMSEIG---------CEPTLD----TYSTLVSGLCRKGRFYEAEQ 810

Query: 531 IFKQMKTCGIPPNAATY-NIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
           + K MK  G  P+   Y +++I  C  +    +     S+  + GF      Y ALI  L
Sbjct: 811 LVKDMKERGFCPDREIYYSLLIAHCKNLEVDHALKIFHSIEAK-GFQLHLSIYRALICAL 869

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649
              G  +EA  L D +  +    D +++  ++    ++G +D+   ++  M      P+ 
Sbjct: 870 CKAGQVEEAQALFDNMLEKEWNADEIVWTVLVDGLLKEGELDLCMKLLHIMESKNFTPNI 929

Query: 650 ST 651
            T
Sbjct: 930 QT 931


>gi|115466932|ref|NP_001057065.1| Os06g0199100 [Oryza sativa Japonica Group]
 gi|51091829|dbj|BAD36643.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113595105|dbj|BAF18979.1| Os06g0199100 [Oryza sativa Japonica Group]
          Length = 1283

 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 84/396 (21%), Positives = 150/396 (37%), Gaps = 59/396 (14%)

Query: 286 LPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLR 345
           LP ++V    F+ ++    R+     A QL+  M+   ++P   +++  I A      L 
Sbjct: 58  LPTVQV----FNAMMGVYARSGRFDDARQLLDAMRDQDIEPDLVSFNTLINARAKSGCLA 113

Query: 346 NG--MEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI--SRCTNPKPFSAF 401
            G  +E+L  ++Q  L+P   T  TL   CS+   LD A A+ +++  S C         
Sbjct: 114 AGVALELLHEVRQAGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASEC--------- 164

Query: 402 LAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI 461
                                   RPD+ TY  + S+ G      E   MF +       
Sbjct: 165 ------------------------RPDLWTYNAMVSVHGRCGKAQEAELMFKE------- 193

Query: 462 NAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLG----TPTYNTVLH 517
                 +     Q   ++  +LL A   EG + E ++  C+     G      TYNT++H
Sbjct: 194 ------LVEKGFQPDAVTYNSLLYAFAKEGDV-ERVERVCEELVKAGFRKDGITYNTMIH 246

Query: 518 SLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYP 577
              +      A+ ++ +M+  G  P+A TY +++D    +     A  ++  M   G  P
Sbjct: 247 MYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLEEMADAGLKP 306

Query: 578 QTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFII 637
             +T++ALI      G  D+A    D +   G+  D L Y  +L           +  + 
Sbjct: 307 TLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVFARSDETRKLMVLY 366

Query: 638 EQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
             M ++  +PD      + +       H+     +Q
Sbjct: 367 RAMIKDGYKPDDGLYQVLLAALAKGNEHDEIEGVIQ 402



 Score = 55.8 bits (133), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 65/146 (44%), Gaps = 3/146 (2%)

Query: 479 SMKNLLKALGAEGMIREL---IQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQM 535
           S+  +++AL  +G + EL   +Q   D    +   T   +L +  +A +    M+I+  M
Sbjct: 659 SVNGMMRALIVDGRLDELYVVVQELQDLDIKISKSTVLLMLEAFAKAGDVFEVMKIYNGM 718

Query: 536 KTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDF 595
           K  G  PN   Y IMI      + F+    +V+ M   GF P  +    L+ +    G+F
Sbjct: 719 KAAGYLPNMHLYRIMISLLCHNKRFRDVELMVAEMEGAGFKPDLVVLNTLLLMYTGTGNF 778

Query: 596 DEALNLLDLVSLEGIPHDVLLYNTIL 621
           D  + +   +   G+  D   YNT++
Sbjct: 779 DRTIEVYHSILEAGLEPDEDTYNTLI 804



 Score = 45.8 bits (107), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 99/243 (40%), Gaps = 30/243 (12%)

Query: 511  TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
            +Y  +L +  +A+   +A  +F++M+T G   N + Y++M+      R    A  L+S M
Sbjct: 834  SYKILLAASGKAKLWEQADLLFEEMRTKGYRLNRSIYHMMMKIYRNARNHSKAEHLLSAM 893

Query: 571  VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
              DG  P   T   L+      G  DEA  +L+ +    +    L Y+T+L         
Sbjct: 894  KEDGIEPTIATMHILMTSYGTSGHPDEAEKVLNSLKSSNLEISTLPYSTVLDAYLRNRDY 953

Query: 631  DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVN----CGFHNSAMEALQVLS-------MRM 679
             +    + +M ++ V+PD    H V++ ++     C   + A+  L+ L        +R+
Sbjct: 954  SLGITKLLEMKRDGVEPD----HQVWTSFIRAASLCEQTDDAILLLKSLQDCGFDLPIRL 1009

Query: 680  LCEEVSTL-EEKRSDFEDLILAEDSEAESRILQFCEDSNENLAFTAALLQLRWCTIVGFP 738
            L E  S+L  E  S  E L   EDS +              L F  AL  L W       
Sbjct: 1010 LTERTSSLFTEVDSFLEKLGTLEDSAS--------------LNFVNALEDLLWAFERRAT 1055

Query: 739  ISW 741
             SW
Sbjct: 1056 ASW 1058



 Score = 43.1 bits (100), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 88/508 (17%), Positives = 194/508 (38%), Gaps = 72/508 (14%)

Query: 151 RYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLS 210
           R+   P + V+N+ +G  A+      A   LD M  + +  + V++  L+        L+
Sbjct: 54  RFPHLPTVQVFNAMMGVYARSGRFDDARQLLDAMRDQDIEPDLVSFNTLINARAKSGCLA 113

Query: 211 A------VHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYI 264
           A      +HE+ +  ++  +++  +L   + + ++  +L  A    + M+A         
Sbjct: 114 AGVALELLHEVRQAGLRPDAITYNTL---ISACSQGSNLDDAVAVFEEMIA--------- 161

Query: 265 NRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGL 324
                      R D+              W+++ ++   GR   +  AE +  ++   G 
Sbjct: 162 --------SECRPDL--------------WTYNAMVSVHGRCGKAQEAELMFKELVEKGF 199

Query: 325 QPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEA 384
           QP + TY+  + A   +  +     V + + +   +    T  T+     K   LDLA  
Sbjct: 200 QPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDGITYNTMIHMYGKMGRLDLALG 259

Query: 385 LLDQISR--CT-NPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFG 440
           L D++    CT +   ++  + +   MD+   A K+  +M    L+P + T+  L   + 
Sbjct: 260 LYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLEEMADAGLKPTLVTFSALICAYA 319

Query: 441 NVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYF 500
                 +    F +             M  + ++   ++   +L         R+L+  +
Sbjct: 320 KSGRQDDAERTFDR-------------MVESGVKPDRLAYLVMLDVFARSDETRKLMVLY 366

Query: 501 ----CDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSI 556
                D   P     Y  +L +L +  E      + + M+           +I+I     
Sbjct: 367 RAMIKDGYKP-DDGLYQVLLAALAKGNEHDEIEGVIQDMEAVFEMNPLVISSILIKA--- 422

Query: 557 IRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIP--HDV 614
             C    ++L+      G+ P   +  +++      G  ++ L+LL+ +  + +P  H++
Sbjct: 423 -ECISQGASLLKRACLQGYEPDGKSLLSILDAYEKMGKHEKGLSLLEWIR-QHVPNSHNL 480

Query: 615 LLYNTILKKACEKGRI-DVI-EFIIEQM 640
           +   +I+   C+ G+I D I E+  +QM
Sbjct: 481 ISECSIM-LLCKNGKIVDAIQEYSRKQM 507



 Score = 40.8 bits (94), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 54/270 (20%), Positives = 104/270 (38%), Gaps = 20/270 (7%)

Query: 313  EQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVE 372
            E ++ +M+  G +P     +  +            +EV   + +  L+P + T  TL V 
Sbjct: 747  ELMVAEMEGAGFKPDLVVLNTLLLMYTGTGNFDRTIEVYHSILEAGLEPDEDTYNTLIVM 806

Query: 373  CSKALELDLAEALLDQIS-RCTNPK--PFSAFLAACDTMDKPERAIKIFAKMRQK-LRPD 428
             S+    +    LL ++  R   PK   +   LAA       E+A  +F +MR K  R +
Sbjct: 807  YSRNFRPEEGFTLLYEMGKRGLTPKLESYKILLAASGKAKLWEQADLLFEEMRTKGYRLN 866

Query: 429  IRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALG 488
               Y ++  ++ N     +  ++ S              M  + I+ +  +M  L+ + G
Sbjct: 867  RSIYHMMMKIYRNARNHSKAEHLLSA-------------MKEDGIEPTIATMHILMTSYG 913

Query: 489  AEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAA 545
              G   E   ++     S   + T  Y+TVL + +  ++    +    +MK  G+ P+  
Sbjct: 914  TSGHPDEAEKVLNSLKSSNLEISTLPYSTVLDAYLRNRDYSLGITKLLEMKRDGVEPDHQ 973

Query: 546  TYNIMIDCCSIIRCFKSASALVSMMVRDGF 575
             +   I   S+      A  L+  +   GF
Sbjct: 974  VWTSFIRAASLCEQTDDAILLLKSLQDCGF 1003


>gi|186510147|ref|NP_188293.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274280|sp|Q9LUR2.1|PP238_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g16710, mitochondrial; Flags: Precursor
 gi|11994626|dbj|BAB02763.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642334|gb|AEE75855.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 507

 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 79/349 (22%), Positives = 149/349 (42%), Gaps = 24/349 (6%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTI-ATLS 370
           A  L  Q+  +G +P+  TY   IR +  +R L + +E+   M  N  +P   T  A ++
Sbjct: 172 AIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVT 231

Query: 371 VECSKALELDLAEALLDQISRCTNPK--PFSAFLAACDTMDKPERAIKIFAKMRQ-KLRP 427
             C      D A  L D + R   P    F+A + A   + K   A +++  M Q  + P
Sbjct: 232 GLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYP 291

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL 487
           D+ TY  L +             M+  +D A+++  +   M RN    + +    L+   
Sbjct: 292 DVFTYGSLINGLC----------MYGLLDEARQMFYL---MERNGCYPNEVIYTTLIHGF 338

Query: 488 GAEGMIRELIQYFCD---SKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNA 544
                + + ++ F +         T TY  ++           A E+F QM +   PP+ 
Sbjct: 339 CKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDI 398

Query: 545 ATYNIMID--CCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL 602
            TYN+++D  CC+     + A  +   M +       +TYT +I+ +   G  ++A +L 
Sbjct: 399 RTYNVLLDGLCCN--GKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLF 456

Query: 603 DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
             +  +G+  +V+ Y T++   C +G I   + + ++M ++   P+ S 
Sbjct: 457 CSLFSKGMKPNVITYTTMISGFCRRGLIHEADSLFKKMKEDGFLPNESV 505



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 90/375 (24%), Positives = 150/375 (40%), Gaps = 40/375 (10%)

Query: 334 FIRAIVSDRG-LRNGMEVLKIMQQNNL-------KPQDSTI---ATLSVECSKALELDLA 382
           +IRA  S R  LRNG+  L+     +L       +P  S I     LSV  +K    D+ 
Sbjct: 44  WIRAFSSYRKILRNGLHNLQFNDALDLFTRMVHSRPLPSIIDFTRLLSV-IAKMNRYDVV 102

Query: 383 EALLDQISRCTNPKPFSAFLAACDTM-------DKPERAIKIFAKM-RQKLRPDIRTYEL 434
            +L +Q+     P      L  C+ +        +P RA     KM +    PD+ T+  
Sbjct: 103 ISLFEQMQILGIP----PLLCTCNIVMHCVCLSSQPCRASCFLGKMMKLGFEPDLVTFTS 158

Query: 435 LFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIR 494
           L + + + N   +   +F Q+        + M    N + ++      L++ L     + 
Sbjct: 159 LLNGYCHWNRIEDAIALFDQI--------LGMGFKPNVVTYT-----TLIRCLCKNRHLN 205

Query: 495 ELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI 551
             ++ F    T    P   TYN ++  L E      A  + + M    I PN  T+  +I
Sbjct: 206 HAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALI 265

Query: 552 DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIP 611
           D    +     A  L ++M++   YP   TY +LI  L  YG  DEA  +  L+   G  
Sbjct: 266 DAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQMFYLMERNGCY 325

Query: 612 HDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEA 671
            + ++Y T++   C+  R++    I  +M Q  V  +  T   +  GY   G  + A E 
Sbjct: 326 PNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEV 385

Query: 672 LQVLSMRMLCEEVST 686
              +S R    ++ T
Sbjct: 386 FNQMSSRRAPPDIRT 400



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/262 (19%), Positives = 110/262 (41%), Gaps = 11/262 (4%)

Query: 398 FSAFLAACDTMDKPERAIKIFAK-MRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVD 456
           F++ L      ++ E AI +F + +    +P++ TY  L               +F+Q+ 
Sbjct: 156 FTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMG 215

Query: 457 SAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVL 516
           +         + +R N+  ++ ++   L  +G  G    L++     +      T+  ++
Sbjct: 216 T---------NGSRPNVV-TYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALI 265

Query: 517 HSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFY 576
            + V+  +   A E++  M    + P+  TY  +I+   +      A  +  +M R+G Y
Sbjct: 266 DAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQMFYLMERNGCY 325

Query: 577 PQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFI 636
           P  + YT LI         ++ + +   +S +G+  + + Y  +++  C  GR DV + +
Sbjct: 326 PNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEV 385

Query: 637 IEQMHQNKVQPDPSTCHFVFSG 658
             QM   +  PD  T + +  G
Sbjct: 386 FNQMSSRRAPPDIRTYNVLLDG 407



 Score = 52.8 bits (125), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 57/260 (21%), Positives = 106/260 (40%), Gaps = 20/260 (7%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +F+ +I A  +      A++L   M  + + P   TY   I  +     L    ++  +M
Sbjct: 260 TFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQMFYLM 319

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKP 411
           ++N   P +    TL     K+  ++    +  ++S+     N   ++  +     + +P
Sbjct: 320 ERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRP 379

Query: 412 ERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           + A ++F +M  ++  PDIRTY +L       N   E+  M  +    +     EMD+  
Sbjct: 380 DVAQEVFNQMSSRRAPPDIRTYNVLLDGLC-CNGKVEKALMIFEYMRKR-----EMDI-- 431

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHR 527
            NI    I ++ + K     G + +    FC   +    P   TY T++         H 
Sbjct: 432 -NIVTYTIIIQGMCKL----GKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGLIHE 486

Query: 528 AMEIFKQMKTCGIPPNAATY 547
           A  +FK+MK  G  PN + Y
Sbjct: 487 ADSLFKKMKEDGFLPNESVY 506


>gi|224130702|ref|XP_002328355.1| predicted protein [Populus trichocarpa]
 gi|222838070|gb|EEE76435.1| predicted protein [Populus trichocarpa]
          Length = 608

 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/362 (19%), Positives = 161/362 (44%), Gaps = 20/362 (5%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           +S + +I+   R  +   A  ++ +M  LG+ P++ T++  I  + ++  ++  +E+   
Sbjct: 124 YSLNVLINCLCRLNHVDFAVSILGKMFKLGIHPTASTFNALINGLCNEGKIKEAVELFNE 183

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPE- 412
           M +   +P   +  T+     K     +A  +  ++ +         +    D++ K   
Sbjct: 184 MVRRGHEPNVISYNTIINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYNTIIDSLCKDRL 243

Query: 413 --RAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
              A++  ++M  + + P++ TY  +   F           +  Q++ A R+     +M 
Sbjct: 244 VNDAMEFLSEMLDRGIPPNVFTYNCMVHGFC----------ILGQLNEATRLFK---EMV 290

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESH 526
             ++    +++  L+  L  EGM+ E   + +   +        TYN ++      +  +
Sbjct: 291 GRDVMPDTVTLTILVDGLCKEGMVSEARLVFETMTEKGVEPNISTYNALMDGYCLQRLMN 350

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
            A ++F+ M   G  P   +YNI+I+     R    A +L++ M      P T+TY+ L+
Sbjct: 351 EAKKVFEIMIRQGCAPGVHSYNILINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLM 410

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
           + L  +G   EALN+   +   G+  +++ Y+ +L   C+ G +D    +++ M + K++
Sbjct: 411 QGLCQFGRPKEALNIFKEMCSYGLLPNLVTYSILLDGFCKHGHLDEALKLLKSMQEKKLE 470

Query: 647 PD 648
           P+
Sbjct: 471 PN 472



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 99/213 (46%), Gaps = 7/213 (3%)

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQE 524
           M +  I  +  +   L+  L  EG I+E ++ F +       P   +YNT+++ L +   
Sbjct: 149 MFKLGIHPTASTFNALINGLCNEGKIKEAVELFNEMVRRGHEPNVISYNTIINGLCKTGN 208

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
           +  A+++FK+M+  G  P+  TYN +ID     R    A   +S M+  G  P   TY  
Sbjct: 209 TSMAVDVFKKMEQNGCKPDVVTYNTIIDSLCKDRLVNDAMEFLSEMLDRGIPPNVFTYNC 268

Query: 585 LIKILLDYGDFDEALNLL-DLVSLEGIPHDVLLYNTILKKA-CEKGRIDVIEFIIEQMHQ 642
           ++      G  +EA  L  ++V  + +P  V L  TIL    C++G +     + E M +
Sbjct: 269 MVHGFCILGQLNEATRLFKEMVGRDVMPDTVTL--TILVDGLCKEGMVSEARLVFETMTE 326

Query: 643 NKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
             V+P+ ST + +  GY      N A +  +++
Sbjct: 327 KGVEPNISTYNALMDGYCLQRLMNEAKKVFEIM 359



 Score = 68.9 bits (167), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 108/252 (42%), Gaps = 21/252 (8%)

Query: 414 AIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM--DMAR 470
           A+ I  KM +  + P   T+  L      +N    EG         K   A+E+  +M R
Sbjct: 142 AVSILGKMFKLGIHPTASTFNAL------INGLCNEG---------KIKEAVELFNEMVR 186

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHR 527
              + + IS   ++  L   G     +  F   +     P   TYNT++ SL + +  + 
Sbjct: 187 RGHEPNVISYNTIINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYNTIIDSLCKDRLVND 246

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           AME   +M   GIPPN  TYN M+    I+     A+ L   MV     P T+T T L+ 
Sbjct: 247 AMEFLSEMLDRGIPPNVFTYNCMVHGFCILGQLNEATRLFKEMVGRDVMPDTVTLTILVD 306

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
            L   G   EA  + + ++ +G+  ++  YN ++   C +  ++  + + E M +    P
Sbjct: 307 GLCKEGMVSEARLVFETMTEKGVEPNISTYNALMDGYCLQRLMNEAKKVFEIMIRQGCAP 366

Query: 648 DPSTCHFVFSGY 659
              + + + +G+
Sbjct: 367 GVHSYNILINGF 378



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 74/161 (45%)

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           +   L S  + ++    + +  QM   G+  N  + N++I+C   +     A +++  M 
Sbjct: 91  FGKFLGSFAKKKQYSTVVSLCNQMDLFGVTHNVYSLNVLINCLCRLNHVDFAVSILGKMF 150

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
           + G +P   T+ ALI  L + G   EA+ L + +   G   +V+ YNTI+   C+ G   
Sbjct: 151 KLGIHPTASTFNALINGLCNEGKIKEAVELFNEMVRRGHEPNVISYNTIINGLCKTGNTS 210

Query: 632 VIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEAL 672
           +   + ++M QN  +PD  T + +          N AME L
Sbjct: 211 MAVDVFKKMEQNGCKPDVVTYNTIIDSLCKDRLVNDAMEFL 251



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 79/370 (21%), Positives = 143/370 (38%), Gaps = 55/370 (14%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           S++ +I+   +T N+ +A  +  +M+  G +P   TY+  I ++  DR + + ME L  M
Sbjct: 195 SYNTIINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYNTIIDSLCKDRLVNDAMEFLSEM 254

Query: 355 QQNNLKPQ----------------------------------DSTIATLSVE--CSKAL- 377
               + P                                   D+   T+ V+  C + + 
Sbjct: 255 LDRGIPPNVFTYNCMVHGFCILGQLNEATRLFKEMVGRDVMPDTVTLTILVDGLCKEGMV 314

Query: 378 -ELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELL 435
            E  L    + +     N   ++A +           A K+F  M RQ   P + +Y +L
Sbjct: 315 SEARLVFETMTEKGVEPNISTYNALMDGYCLQRLMNEAKKVFEIMIRQGCAPGVHSYNIL 374

Query: 436 FSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRE 495
            + F              ++D AK + A   +M    +    ++   L++ L   G  +E
Sbjct: 375 INGFCKSR----------RMDEAKSLLA---EMYHKALNPDTVTYSTLMQGLCQFGRPKE 421

Query: 496 LIQYF---CDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID 552
            +  F   C         TY+ +L    +      A+++ K M+   + PN   + I+I+
Sbjct: 422 ALNIFKEMCSYGLLPNLVTYSILLDGFCKHGHLDEALKLLKSMQEKKLEPNIVHHTILIE 481

Query: 553 CCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPH 612
              I    + A  L S +  DG  P   TYT +IK LL  G  DEA +L   +  +G   
Sbjct: 482 GMFIAGKLEVAKELFSKLFADGIRPTIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLP 541

Query: 613 DVLLYNTILK 622
           +   YN +++
Sbjct: 542 NSCSYNVMIQ 551



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 82/178 (46%), Gaps = 2/178 (1%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           + N +++ L        A+ I  +M   GI P A+T+N +I+        K A  L + M
Sbjct: 125 SLNVLINCLCRLNHVDFAVSILGKMFKLGIHPTASTFNALINGLCNEGKIKEAVELFNEM 184

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           VR G  P  ++Y  +I  L   G+   A+++   +   G   DV+ YNTI+   C+   +
Sbjct: 185 VRRGHEPNVISYNTIINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYNTIIDSLCKDRLV 244

Query: 631 -DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTL 687
            D +EF+ E + +  + P+  T + +  G+   G  N A    + +  R +  +  TL
Sbjct: 245 NDAMEFLSEMLDRG-IPPNVFTYNCMVHGFCILGQLNEATRLFKEMVGRDVMPDTVTL 301



 Score = 59.3 bits (142), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 78/176 (44%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           T+N +++ L    +   A+E+F +M   G  PN  +YN +I+          A  +   M
Sbjct: 160 TFNALINGLCNEGKIKEAVELFNEMVRRGHEPNVISYNTIINGLCKTGNTSMAVDVFKKM 219

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
            ++G  P  +TY  +I  L      ++A+  L  +   GIP +V  YN ++   C  G++
Sbjct: 220 EQNGCKPDVVTYNTIIDSLCKDRLVNDAMEFLSEMLDRGIPPNVFTYNCMVHGFCILGQL 279

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           +    + ++M    V PD  T   +  G    G  + A    + ++ + +   +ST
Sbjct: 280 NEATRLFKEMVGRDVMPDTVTLTILVDGLCKEGMVSEARLVFETMTEKGVEPNIST 335



 Score = 44.7 bits (104), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 56/265 (21%), Positives = 112/265 (42%), Gaps = 33/265 (12%)

Query: 319 MQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALE 378
           M   G++P+  TY+  +      R +    +V +IM +    P   +   L     K+  
Sbjct: 324 MTEKGVEPNISTYNALMDGYCLQRLMNEAKKVFEIMIRQGCAPGVHSYNILINGFCKSRR 383

Query: 379 LDLAEALLDQI-SRCTNPKP--FSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYEL 434
           +D A++LL ++  +  NP    +S  +       +P+ A+ IF +M    L P++ TY +
Sbjct: 384 MDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQFGRPKEALNIFKEMCSYGLLPNLVTYSI 443

Query: 435 LFSLF---GNVNAPYE---------------------EGNMF--SQVDSAKRI-NAIEMD 467
           L   F   G+++   +                     EG MF   +++ AK + + +  D
Sbjct: 444 LLDGFCKHGHLDEALKLLKSMQEKKLEPNIVHHTILIEG-MFIAGKLEVAKELFSKLFAD 502

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHR 527
             R  I+   + +K LLK  G      +L +   D      + +YN ++   ++ Q+S  
Sbjct: 503 GIRPTIRTYTVMIKGLLKE-GLSDEAYDLFRKMEDDGFLPNSCSYNVMIQGFLQNQDSST 561

Query: 528 AMEIFKQMKTCGIPPNAATYNIMID 552
           A+ +  +M       N +T+ +++D
Sbjct: 562 AIRLIDEMVGKRFSANLSTFQMLLD 586



 Score = 39.3 bits (90), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 78/391 (19%), Positives = 150/391 (38%), Gaps = 40/391 (10%)

Query: 52  SKATQMQIVDALC-RGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETW 110
           + +T   +++ LC  G+   A  L   +    H      +  I+N   ++ +    ++ +
Sbjct: 157 TASTFNALINGLCNEGKIKEAVELFNEMVRRGHEPNVISYNTIINGLCKTGNTSMAVDVF 216

Query: 111 RMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAK 170
           + ME+     +   Y  ++ +LCK   + +A   +  + +R GI P +  YN  +     
Sbjct: 217 KKMEQNGCKPDVVTYNTIIDSLCKDRLVNDAMEFLSEMLDR-GIPPNVFTYNCMVHGFCI 275

Query: 171 LHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYSLSIFS 229
           L  +  A      M  R V  + VT T L+     +  +S    ++E    K    +I +
Sbjct: 276 LGQLNEATRLFKEMVGRDVMPDTVTLTILVDGLCKEGMVSEARLVFETMTEKGVEPNIST 335

Query: 230 LRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLY-INRTSEGRLRSSRLDIPIPLNALPV 288
               +  +   R +  A +  + M+       ++  N    G  +S R+D    L A   
Sbjct: 336 YNALMDGYCLQRLMNEAKKVFEIMIRQGCAPGVHSYNILINGFCKSRRMDEAKSLLAEMY 395

Query: 289 MKVLR---WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLR 345
            K L     ++S ++    +      A  +  +M S GL P+  TY   +        L 
Sbjct: 396 HKALNPDTVTYSTLMQGLCQFGRPKEALNIFKEMCSYGLLPNLVTYSILLDGFCKHGHLD 455

Query: 346 NGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAAC 405
             +++LK MQ+  L+P +    T+ +E                            F+A  
Sbjct: 456 EALKLLKSMQEKKLEP-NIVHHTILIE--------------------------GMFIAG- 487

Query: 406 DTMDKPERAIKIFAKM-RQKLRPDIRTYELL 435
               K E A ++F+K+    +RP IRTY ++
Sbjct: 488 ----KLEVAKELFSKLFADGIRPTIRTYTVM 514


>gi|147861320|emb|CAN83994.1| hypothetical protein VITISV_031191 [Vitis vinifera]
          Length = 559

 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 77/362 (21%), Positives = 151/362 (41%), Gaps = 20/362 (5%)

Query: 319 MQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALE 378
           +++ G   S+  +   + A        + ++  ++++++NL+    +   L     K   
Sbjct: 146 LEARGTHQSNLVFSVLMNAYTDSGYFSDAIQCFRLVRKHNLQIPFHSCGYLFDRLMKLNL 205

Query: 379 LDLAEALLDQISRCTNPKPFSAFLAACDTMDKPER---AIKIFAKM-RQKLRPDIRTYEL 434
              A A  ++I  C  P     F      + K  +   A  +F ++ ++ LRP + ++  
Sbjct: 206 TSPAWAFYEEILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNT 265

Query: 435 LFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIR 494
           L      +N   + GN+    D   R+    M+   N +     +   L+  L  EG + 
Sbjct: 266 L------INGYCKSGNL----DQGFRLKRFMME---NRVFPDVFTYSVLINGLCKEGQLD 312

Query: 495 ELIQYF---CDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI 551
           +  + F   CD        T+ T+++       +   MEI++QM   G+ P+  TYN +I
Sbjct: 313 DANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLI 372

Query: 552 DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIP 611
           +    +   + A  LV  M + G  P   TYT LI      GD + AL +   +  EGI 
Sbjct: 373 NGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIE 432

Query: 612 HDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEA 671
            D + +  ++   C +G++   E  + +M +  ++PD +T   V  G+   G   +  + 
Sbjct: 433 LDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKL 492

Query: 672 LQ 673
           L+
Sbjct: 493 LK 494



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 69/336 (20%), Positives = 132/336 (39%), Gaps = 20/336 (5%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           F+ ++H   +      A+ L  ++   GL+P+  +++  I        L  G  + + M 
Sbjct: 228 FNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQGFRLKRFMM 287

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEAL-LDQISRCTNPK--PFSAFLAACDTMDKPE 412
           +N + P   T + L     K  +LD A  L L+   R   P    F+  +       + +
Sbjct: 288 ENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRAD 347

Query: 413 RAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471
             ++I+ +M R+ ++PD+ TY  L              N   +V   +    + ++M + 
Sbjct: 348 LGMEIYQQMLRKGVKPDVITYNTLI-------------NGLCKVGDLREAKKLVIEMTQR 394

Query: 472 NIQHSHISMKNLLKALGAEGMIR---ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRA 528
            ++    +   L+     EG +    E+ +        L    +  ++       +   A
Sbjct: 395 GLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEA 454

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
               ++M   GI P+ ATY ++I         K+   L+  M  DG  P  +TY  L+  
Sbjct: 455 ERTLREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNG 514

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKA 624
           L   G    A  LLD +   G+  D + YN +L++ 
Sbjct: 515 LCKQGQMKNANMLLDAMLNLGVVPDDITYNILLERT 550



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 60/269 (22%), Positives = 118/269 (43%), Gaps = 17/269 (6%)

Query: 421 MRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISM 480
           M  ++ PD+ TY +L      +N   +EG    Q+D A   N + ++M    +  + ++ 
Sbjct: 287 MENRVFPDVFTYSVL------INGLCKEG----QLDDA---NKLFLEMCDRGLVPNDVTF 333

Query: 481 KNLLKA---LGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKT 537
             L+      G   +  E+ Q            TYNT+++ L +  +   A ++  +M  
Sbjct: 334 TTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQ 393

Query: 538 CGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDE 597
            G+ P+  TY ++ID C      +SA  +   MV++G     + +TALI      G   E
Sbjct: 394 RGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIE 453

Query: 598 ALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFS 657
           A   L  +   GI  D   Y  ++   C+KG +     ++++M  +   P   T + + +
Sbjct: 454 AERTLREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLN 513

Query: 658 GYVNCG-FHNSAMEALQVLSMRMLCEEVS 685
           G    G   N+ M    +L++ ++ ++++
Sbjct: 514 GLCKQGQMKNANMLLDAMLNLGVVPDDIT 542



 Score = 62.8 bits (151), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 64/301 (21%), Positives = 124/301 (41%), Gaps = 22/301 (7%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           SF+ +I+   ++ N     +L   M    + P   TY   I  +  +  L +  ++   M
Sbjct: 262 SFNTLINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEM 321

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDK 410
               L P D T  TL          DL   +  Q+ R    KP    ++  +     +  
Sbjct: 322 CDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLR-KGVKPDVITYNTLINGLCKVGD 380

Query: 411 PERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
              A K+  +M Q+ L+PD  TY +L      ++   +EG++ S ++       I  +M 
Sbjct: 381 LREAKKLVIEMTQRGLKPDKFTYTML------IDGCCKEGDLESALE-------IRKEMV 427

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESH 526
           +  I+  +++   L+     EG + E    ++   ++       TY  V+H   +  +  
Sbjct: 428 KEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGFCKKGDVK 487

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
              ++ K+M+  G  P   TYN++++        K+A+ L+  M+  G  P  +TY  L+
Sbjct: 488 TGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLDAMLNLGVVPDDITYNILL 547

Query: 587 K 587
           +
Sbjct: 548 E 548



 Score = 45.4 bits (106), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 56/268 (20%), Positives = 108/268 (40%), Gaps = 8/268 (2%)

Query: 128 MMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHAN-LCLDLMDS 186
           ++   CK G L++   L  F+ E   ++P +  Y+  +    K   +  AN L L++ D 
Sbjct: 266 LINGYCKSGNLDQGFRLKRFMMENR-VFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDR 324

Query: 187 RMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYSLSIFSLRKFVWSFTRLRDLKS 245
            +V  N+VT+T L+             EI++  + K     + +    +    ++ DL+ 
Sbjct: 325 GLV-PNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLRE 383

Query: 246 AYETLQHMVALAMM-GKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRW---SFSDVIH 301
           A + +  M    +   K       +G  +   L+  + +    V + +     +F+ +I 
Sbjct: 384 AKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALIS 443

Query: 302 ACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKP 361
              R      AE+ + +M   G++P   TY   I        ++ G ++LK MQ +   P
Sbjct: 444 GFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVP 503

Query: 362 QDSTIATLSVECSKALELDLAEALLDQI 389
              T   L     K  ++  A  LLD +
Sbjct: 504 GVVTYNVLLNGLCKQGQMKNANMLLDAM 531



 Score = 39.3 bits (90), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 3/102 (2%)

Query: 109 TWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGAC 168
           T R M E  I  ++  Y +++   CK G ++    L+  + +  G  P +  YN  L   
Sbjct: 457 TLREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEM-QCDGHVPGVVTYNVLLNGL 515

Query: 169 AKLHSMVHANLCLDLMDSRMVGKNEVTYTELLK--LAVWQKN 208
            K   M +AN+ LD M +  V  +++TY  LL+  L  W++ 
Sbjct: 516 CKQGQMKNANMLLDAMLNLGVVPDDITYNILLERTLQAWKQG 557


>gi|240254191|ref|NP_174467.4| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
 gi|357528959|sp|Q9C6S6.2|PPR67_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g31840
 gi|332193282|gb|AEE31403.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 840

 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 128/600 (21%), Positives = 236/600 (39%), Gaps = 80/600 (13%)

Query: 69  SRASHLLLNLGHAHHSLGADDFFHILN-YCARSP-DPLFVMETWRMMEEKEIGLNNKCYL 126
           SR   L+L+ G A + +    F  ++N +C R   D  F  + +++ME++ I  +   Y 
Sbjct: 271 SRLLSLVLDCGPAPNVV---TFCTLINGFCKRGEMDRAF--DLFKVMEQRGIEPDLIAYS 325

Query: 127 LMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDS 186
            ++    K G L     L +      G+   + V++S +    K   +  A++    M  
Sbjct: 326 TLIDGYFKAGMLGMGHKL-FSQALHKGVKLDVVVFSSTIDVYVKSGDLATASVVYKRMLC 384

Query: 187 RMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH-YSLSIFSLRKFVWSFTRLRDLKS 245
           + +  N VTYT L+K       +     ++   +K     SI +    +  F +  +L+S
Sbjct: 385 QGISPNVVTYTILIKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLIDGFCKCGNLRS 444

Query: 246 AYETLQHMVALA------MMGKLYINRTSEG-RLRSSRLDIPIPLNALPVMKVLRWSFSD 298
            +   + M+ +       + G L    + +G  L + R  + +   ++ +  V+   F+ 
Sbjct: 445 GFALYEDMIKMGYPPDVVIYGVLVDGLSKQGLMLHAMRFSVKMLGQSIRLNVVV---FNS 501

Query: 299 VIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNN 358
           +I    R      A ++   M   G++P   T+   +R  + +  L   + +   M +  
Sbjct: 502 LIDGWCRLNRFDEALKVFRLMGIYGIKPDVATFTTVMRVSIMEGRLEEALFLFFRMFKMG 561

Query: 359 LKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTM-------DKP 411
           L+P      TL     K ++  +   L D + R       SA +A C+ +        + 
Sbjct: 562 LEPDALAYCTLIDAFCKHMKPTIGLQLFDLMQR----NKISADIAVCNVVIHLLFKCHRI 617

Query: 412 ERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           E A K F  + + K+ PDI TY  +   + ++           ++D A+RI         
Sbjct: 618 EDASKFFNNLIEGKMEPDIVTYNTMICGYCSLR----------RLDEAERIF-------- 659

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLG--TPTYNTVLHSLVEAQESHRA 528
                       LLK                   TP G  T T   ++H L +  +   A
Sbjct: 660 -----------ELLKV------------------TPFGPNTVTLTILIHVLCKNNDMDGA 690

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
           + +F  M   G  PNA TY  ++D  S     + +  L   M   G  P  ++Y+ +I  
Sbjct: 691 IRMFSIMAEKGSKPNAVTYGCLMDWFSKSVDIEGSFKLFEEMQEKGISPSIVSYSIIIDG 750

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
           L   G  DEA N+        +  DV+ Y  +++  C+ GR+     + E M +N V+PD
Sbjct: 751 LCKRGRVDEATNIFHQAIDAKLLPDVVAYAILIRGYCKVGRLVEAALLYEHMLRNGVKPD 810



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 70/378 (18%), Positives = 137/378 (36%), Gaps = 29/378 (7%)

Query: 311 LAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLS 370
           +A +L+  +   G  P+  T+   I        +    ++ K+M+Q  ++P     +TL 
Sbjct: 269 VASRLLSLVLDCGPAPNVVTFCTLINGFCKRGEMDRAFDLFKVMEQRGIEPDLIAYSTLI 328

Query: 371 VECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKP---ERAIKIFAKMR-QKLR 426
               KA  L +   L  Q            F +  D   K      A  ++ +M  Q + 
Sbjct: 329 DGYFKAGMLGMGHKLFSQALHKGVKLDVVVFSSTIDVYVKSGDLATASVVYKRMLCQGIS 388

Query: 427 PDIRTYELLFSLFGNVNAPYEEGNMFSQV----------------------DSAKRINAI 464
           P++ TY +L          YE   M+ Q+                       + +   A+
Sbjct: 389 PNVVTYTILIKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLIDGFCKCGNLRSGFAL 448

Query: 465 EMDMARNNIQHSHISMKNLLKALGAEGMIRELIQY---FCDSKTPLGTPTYNTVLHSLVE 521
             DM +       +    L+  L  +G++   +++          L    +N+++     
Sbjct: 449 YEDMIKMGYPPDVVIYGVLVDGLSKQGLMLHAMRFSVKMLGQSIRLNVVVFNSLIDGWCR 508

Query: 522 AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMT 581
                 A+++F+ M   GI P+ AT+  ++    +    + A  L   M + G  P  + 
Sbjct: 509 LNRFDEALKVFRLMGIYGIKPDVATFTTVMRVSIMEGRLEEALFLFFRMFKMGLEPDALA 568

Query: 582 YTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMH 641
           Y  LI     +      L L DL+    I  D+ + N ++    +  RI+        + 
Sbjct: 569 YCTLIDAFCKHMKPTIGLQLFDLMQRNKISADIAVCNVVIHLLFKCHRIEDASKFFNNLI 628

Query: 642 QNKVQPDPSTCHFVFSGY 659
           + K++PD  T + +  GY
Sbjct: 629 EGKMEPDIVTYNTMICGY 646



 Score = 52.8 bits (125), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 52/235 (22%), Positives = 96/235 (40%), Gaps = 6/235 (2%)

Query: 452 FSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKT-PLGTP 510
           +  VD A  I      +     Q S   M N L       +I +     C     P G  
Sbjct: 159 YGMVDKALEIFVYSTQLGVVIPQDSVYRMLNSLIGSDRVDLIADHFDKLCRGGIEPSGVS 218

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
            +  VL +L    E  +A++  + +   G      + N ++   S+ +  + AS L+S++
Sbjct: 219 AHGFVLDALFCKGEVTKALDFHRLVMERGFRVGIVSCNKVLKGLSVDQ-IEVASRLLSLV 277

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           +  G  P  +T+  LI      G+ D A +L  ++   GI  D++ Y+T++    + G +
Sbjct: 278 LDCGPAPNVVTFCTLINGFCKRGEMDRAFDLFKVMEQRGIEPDLIAYSTLIDGYFKAGML 337

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVS 685
            +   +  Q     V+ D      VFS  ++    +  +    V+  RMLC+ +S
Sbjct: 338 GMGHKLFSQALHKGVKLDV----VVFSSTIDVYVKSGDLATASVVYKRMLCQGIS 388


>gi|357462685|ref|XP_003601624.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355490672|gb|AES71875.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 684

 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 99/211 (46%), Gaps = 3/211 (1%)

Query: 456 DSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTY 512
           D +K I+         NI    I+   ++   G   + RE   L+Q   D+     T +Y
Sbjct: 245 DYSKAISIFNALKGSGNIVPDLIACNMMISVYGKAKLFREARLLLQEMRDNGVNPSTASY 304

Query: 513 NTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVR 572
           +T+L   V+ Q+   A+ +F +M     P +  T NIMID    ++  K A      M +
Sbjct: 305 STLLAIYVDNQKFVEAVSLFSEMNEVECPIDLTTCNIMIDVYGQLQMIKEADCFFWGMRK 364

Query: 573 DGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDV 632
            G  P  ++Y  ++++  + G F EA++L  L+ ++G+P +V+ YNT++    +    D 
Sbjct: 365 MGIEPNVVSYNTVLRVYGEAGLFGEAVHLFSLMQMKGVPQNVVTYNTMISIYGKSLEHDK 424

Query: 633 IEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
              +I++M    +QP+  T   + S +   G
Sbjct: 425 ATNLIQEMQSRGIQPNAITYSTIISIWEKAG 455



 Score = 79.7 bits (195), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 85/359 (23%), Positives = 150/359 (41%), Gaps = 29/359 (8%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           ++ VI    R +   LA  L  +M   GL P  +TY   I          +    L+ M+
Sbjct: 163 YNVVIRNVLRAKQWQLAHGLFDEMLQKGLSPDKYTYSTLITHFSKQGLFDSSFFWLQQME 222

Query: 356 QNNLKPQDSTIATLSVECSKAL-ELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERA 414
           ++N+   D  + +  +E S+ L +   A ++ + +    N  P    L AC+ M      
Sbjct: 223 RDNVSG-DLVLYSNLIELSRKLCDYSKAISIFNALKGSGNIVPD---LIACNMMISVYGK 278

Query: 415 IKIFAKMR---QKLR-----PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM 466
            K+F + R   Q++R     P   +Y  L +++ +     E  ++FS+++  +      +
Sbjct: 279 AKLFREARLLLQEMRDNGVNPSTASYSTLLAIYVDNQKFVEAVSLFSEMNEVE----CPI 334

Query: 467 DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQ 523
           D+   NI         ++   G   MI+E   +F   +     P   +YNTVL    EA 
Sbjct: 335 DLTTCNI---------MIDVYGQLQMIKEADCFFWGMRKMGIEPNVVSYNTVLRVYGEAG 385

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
               A+ +F  M+  G+P N  TYN MI           A+ L+  M   G  P  +TY+
Sbjct: 386 LFGEAVHLFSLMQMKGVPQNVVTYNTMISIYGKSLEHDKATNLIQEMQSRGIQPNAITYS 445

Query: 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642
            +I I    G  D A  L   +   G+  D +LY T++    + G +   + ++ ++ Q
Sbjct: 446 TIISIWEKAGKLDRAAMLFHKLRTSGVKIDEILYQTMIVAYQKAGLVAHAKRLLNELKQ 504



 Score = 69.3 bits (168), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 75/346 (21%), Positives = 133/346 (38%), Gaps = 21/346 (6%)

Query: 326 PSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEAL 385
           PS + Y+  IR ++  +  +    +   M Q  L P   T +TL    SK    D +   
Sbjct: 158 PSLNVYNVVIRNVLRAKQWQLAHGLFDEMLQKGLSPDKYTYSTLITHFSKQGLFDSSFFW 217

Query: 386 LDQISR---CTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ--KLRPDIRTYELLFSLFG 440
           L Q+ R     +   +S  +     +    +AI IF  ++    + PD+    ++ S++G
Sbjct: 218 LQQMERDNVSGDLVLYSNLIELSRKLCDYSKAISIFNALKGSGNIVPDLIACNMMISVYG 277

Query: 441 NVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYF 500
                + E  +  Q            +M  N +  S  S   LL          E +  F
Sbjct: 278 KAKL-FREARLLLQ------------EMRDNGVNPSTASYSTLLAIYVDNQKFVEAVSLF 324

Query: 501 CD---SKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSII 557
            +    + P+   T N ++    + Q    A   F  M+  GI PN  +YN ++      
Sbjct: 325 SEMNEVECPIDLTTCNIMIDVYGQLQMIKEADCFFWGMRKMGIEPNVVSYNTVLRVYGEA 384

Query: 558 RCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLY 617
             F  A  L S+M   G     +TY  +I I     + D+A NL+  +   GI  + + Y
Sbjct: 385 GLFGEAVHLFSLMQMKGVPQNVVTYNTMISIYGKSLEHDKATNLIQEMQSRGIQPNAITY 444

Query: 618 NTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
           +TI+    + G++D    +  ++  + V+ D      +   Y   G
Sbjct: 445 STIISIWEKAGKLDRAAMLFHKLRTSGVKIDEILYQTMIVAYQKAG 490


>gi|296085006|emb|CBI28421.3| unnamed protein product [Vitis vinifera]
          Length = 740

 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 86/370 (23%), Positives = 162/370 (43%), Gaps = 22/370 (5%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A  L  QM + G+QPS  T++  I  +     +R    +L  + Q +L P   T  +L +
Sbjct: 182 ARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLIL 241

Query: 372 ECSKALELDLAEALLDQISR--C-TNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRP 427
              +   LDLA  + D++ +  C  N   +S  +       + + A+ +  +M +K + P
Sbjct: 242 GHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEP 301

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL 487
            + TY L  +    +    E   + +++              R N+Q ++ ++ + L  L
Sbjct: 302 TVYTYTLPITALCAIEHEEEAIELVARMKKRG---------CRPNVQ-TYTALISGLSRL 351

Query: 488 G----AEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPN 543
           G    A G+  ++++   +   P  T TYN +++ L        A++IF  M+  G   N
Sbjct: 352 GKLEVAIGLYHKMLK---EGLVP-NTVTYNALINELCVGGRFSTALKIFHWMEGHGSLAN 407

Query: 544 AATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLD 603
             TYN +I    +    + A  L   M++ G  P  +TY  LI   L  G+ + A  LLD
Sbjct: 408 TQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLD 467

Query: 604 LVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
           L+   G   D   YN ++    + G+++   F  ++M +  + P+P +   +  G+   G
Sbjct: 468 LMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDG 527

Query: 664 FHNSAMEALQ 673
             + A+  L+
Sbjct: 528 KVDIALSLLK 537



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 121/579 (20%), Positives = 230/579 (39%), Gaps = 42/579 (7%)

Query: 105 FVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVY--N 162
           F+    R++ ++     +   +LM++A C+    EE   +  FL E  G+     +Y  N
Sbjct: 111 FISMLNRLVRDRVFAPADHIRILMIKA-CRNE--EEIRRVADFLNEISGMGFGFSLYSCN 167

Query: 163 SFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH 222
           + L   AK   +  A      M +  +  + +T+  L+ + + +K      E+    I  
Sbjct: 168 TLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINI-LSKKGKVREAELILSQIFQ 226

Query: 223 YSLS--IFSLRKFVWSFTRLRDLKSAYETLQHMVALA------MMGKLYINRTSEGRLRS 274
           Y LS  +F+    +    R R+L  A+     MV             L     +EGR+  
Sbjct: 227 YDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDE 286

Query: 275 S--RLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYD 332
           +   L+  I     P +    ++++  I A    ++   A +L+ +M+  G +P+  TY 
Sbjct: 287 ALDMLEEMIEKGIEPTV----YTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYT 342

Query: 333 GFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEAL---LDQI 389
             I  +     L   + +   M +  L P   T   L  E         A  +   ++  
Sbjct: 343 ALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGH 402

Query: 390 SRCTNPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEE 448
               N + ++  +         E+A+ +F KM +    P + TY  L      +N    +
Sbjct: 403 GSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTL------INGYLTK 456

Query: 449 GNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLG 508
           GN    V++A R+  +   M  N  +    +   L+      G +     YF +      
Sbjct: 457 GN----VNNAARLLDL---MKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGL 509

Query: 509 TP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASA 565
            P   +Y  ++    +  +   A+ + K+M+  G  PN  +YN +I+  S    F  A  
Sbjct: 510 NPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEK 569

Query: 566 LVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL-DLVSLEGIPHDVLLYNTILKKA 624
           +   MV  G  P  +TYT LI  L   G    A  +  D+   + +P ++  Y++++   
Sbjct: 570 ICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLP-NLYTYSSLIYGL 628

Query: 625 CEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
           C++G+ D  E ++++M +  + PD  T   +  G+V  G
Sbjct: 629 CQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLG 667



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 92/211 (43%), Gaps = 3/211 (1%)

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQE 524
           M +     + ++   L+  L  EG + E   +++   +        TY   + +L   + 
Sbjct: 259 MVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEH 318

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
              A+E+  +MK  G  PN  TY  +I   S +   + A  L   M+++G  P T+TY A
Sbjct: 319 EEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNA 378

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
           LI  L   G F  AL +   +   G   +   YN I+K  C  G I+    + E+M +  
Sbjct: 379 LINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMG 438

Query: 645 VQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
             P   T + + +GY+  G  N+A   L ++
Sbjct: 439 PLPTVVTYNTLINGYLTKGNVNNAARLLDLM 469



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 63/282 (22%), Positives = 123/282 (43%), Gaps = 20/282 (7%)

Query: 315 LMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECS 374
           L  +M  +G  P+  TY+  I   ++   + N   +L +M++N  +P + T   L    S
Sbjct: 430 LFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFS 489

Query: 375 KALELDLAEALLDQISRC---TNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIR 430
           K  +L+ A     ++  C    NP  ++A +       K + A+ +  +M +    P++ 
Sbjct: 490 KWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVE 549

Query: 431 TYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAE 490
           +Y  +      +N   +E N FS+ +       I   M    +  + I+   L+  L   
Sbjct: 550 SYNAV------INGLSKE-NRFSEAEK------ICDKMVEQGLLPNVITYTTLIDGLCRN 596

Query: 491 GMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATY 547
           G  +   + F D +     P   TY+++++ L +  ++  A  + K+M+  G+ P+  T+
Sbjct: 597 GRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTF 656

Query: 548 NIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
             +ID   ++     A  L+  MV  G  P   TY+ L+K L
Sbjct: 657 TSLIDGFVVLGRIDHAFLLLRRMVDMGCKPNYRTYSVLLKGL 698


>gi|224079730|ref|XP_002305930.1| predicted protein [Populus trichocarpa]
 gi|222848894|gb|EEE86441.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 82/376 (21%), Positives = 152/376 (40%), Gaps = 24/376 (6%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           ++++ +I+   +   + LA  L  +M+  G Q +  TY   I ++   R +   +++   
Sbjct: 81  YTYTTIINGLCKIGETALAAGLFKKMEEAGCQLNVVTYSTLIHSLCKYRRVNEALDIFSY 140

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDK--- 410
           M+  ++ P   T  +L            A ALL++++          F    DT  K   
Sbjct: 141 MKAKDISPTIFTYTSLIQGLCNFSRWKEASALLNEMTSLNIMPNVVTFNVLVDTFCKEGK 200

Query: 411 ---PERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMD 467
               E  +K   +M   + PD+ TY  L  ++G         +M+++V  A+++  +   
Sbjct: 201 VLAAEGVLKTMTEM--GVEPDVVTYNSL--MYGY--------SMWTEVVEARKLFDV--- 245

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQE 524
           M     +    S   L+        I E  Q F +      TP   +YNT++H L +   
Sbjct: 246 MITKGCKPDVFSYSILINGYCKAKRIDEAKQLFNEMIHQGSTPNNVSYNTLIHGLCQLGR 305

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
              A ++FK M T G  PN  TY I++D          A  L   M      P  + Y  
Sbjct: 306 LREAQDLFKNMHTNGNLPNLYTYAILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYNI 365

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
           L+  +   G+  +A  L   + + G+  +V +Y TI+   C++G +D        M  + 
Sbjct: 366 LVNAMCKSGNLKDARELFSELFVIGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEDDG 425

Query: 645 VQPDPSTCHFVFSGYV 660
             PD  + + +  G++
Sbjct: 426 CPPDEFSYNVIIRGFL 441



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 93/191 (48%), Gaps = 3/191 (1%)

Query: 472 NIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRA 528
            +Q + ++   L+  LG  G   + ++ F D       P   TY T+++ L +  E+  A
Sbjct: 40  GLQPTIVTFTTLINGLGKVGKFAQAVELFDDMVARGCQPDDYTYTTIINGLCKIGETALA 99

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
             +FK+M+  G   N  TY+ +I      R    A  + S M      P   TYT+LI+ 
Sbjct: 100 AGLFKKMEEAGCQLNVVTYSTLIHSLCKYRRVNEALDIFSYMKAKDISPTIFTYTSLIQG 159

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
           L ++  + EA  LL+ ++   I  +V+ +N ++   C++G++   E +++ M +  V+PD
Sbjct: 160 LCNFSRWKEASALLNEMTSLNIMPNVVTFNVLVDTFCKEGKVLAAEGVLKTMTEMGVEPD 219

Query: 649 PSTCHFVFSGY 659
             T + +  GY
Sbjct: 220 VVTYNSLMYGY 230



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 79/353 (22%), Positives = 141/353 (39%), Gaps = 28/353 (7%)

Query: 307 QNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTI 366
           Q   L   ++ +   LGLQP+  T+   I  +         +E+   M     +P D T 
Sbjct: 24  QRVDLGFSVLAKGIKLGLQPTIVTFTTLINGLGKVGKFAQAVELFDDMVARGCQPDDYTY 83

Query: 367 ATLSVECSKALELDLAEALLDQISRCT---NPKPFSAFLAACDTMDKPERAIKIFAKMRQ 423
            T+     K  E  LA  L  ++       N   +S  + +     +   A+ IF+ M+ 
Sbjct: 84  TTIINGLCKIGETALAAGLFKKMEEAGCQLNVVTYSTLIHSLCKYRRVNEALDIFSYMKA 143

Query: 424 K-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKN 482
           K + P I TY  L     N          FS+    K  +A+  +M   NI  + ++   
Sbjct: 144 KDISPTIFTYTSLIQGLCN----------FSR---WKEASALLNEMTSLNIMPNVVTFNV 190

Query: 483 LL-------KALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQM 535
           L+       K L AEG+++ + +   +        TYN++++      E   A ++F  M
Sbjct: 191 LVDTFCKEGKVLAAEGVLKTMTEMGVEPD----VVTYNSLMYGYSMWTEVVEARKLFDVM 246

Query: 536 KTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDF 595
            T G  P+  +Y+I+I+     +    A  L + M+  G  P  ++Y  LI  L   G  
Sbjct: 247 ITKGCKPDVFSYSILINGYCKAKRIDEAKQLFNEMIHQGSTPNNVSYNTLIHGLCQLGRL 306

Query: 596 DEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
            EA +L   +   G   ++  Y  +L   C++G +     +   M    ++P+
Sbjct: 307 REAQDLFKNMHTNGNLPNLYTYAILLDGFCKQGYLGKAFRLFRAMQSTYLKPN 359



 Score = 47.8 bits (112), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 59/153 (38%)

Query: 509 TPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVS 568
           T T N +++   + Q       +  +    G+ P   T+  +I+    +  F  A  L  
Sbjct: 10  TCTLNILINCFCQLQRVDLGFSVLAKGIKLGLQPTIVTFTTLINGLGKVGKFAQAVELFD 69

Query: 569 MMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
            MV  G  P   TYT +I  L   G+   A  L   +   G   +V+ Y+T++   C+  
Sbjct: 70  DMVARGCQPDDYTYTTIINGLCKIGETALAAGLFKKMEEAGCQLNVVTYSTLIHSLCKYR 129

Query: 629 RIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVN 661
           R++    I   M    + P   T   +  G  N
Sbjct: 130 RVNEALDIFSYMKAKDISPTIFTYTSLIQGLCN 162


>gi|302760809|ref|XP_002963827.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
 gi|300169095|gb|EFJ35698.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
          Length = 616

 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 87/404 (21%), Positives = 170/404 (42%), Gaps = 31/404 (7%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +F  +I    +   +  A + +  +    + P  + ++  I  +  D      +++ + M
Sbjct: 64  TFKILIRGNCKAGQAMRALEFLRALDEFSVAPDVYIFNVLIHGLFKDGNPDQAVKLFENM 123

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR-----CTNPKPFSAFLAACDTMD 409
           + + +KP+  T  T+     K+  L+ A  LL+++ R       +   ++  + A     
Sbjct: 124 ESSRVKPEIVTYNTVISGLCKSGNLEKARELLEEMIRKGGKSAPDIVTYNTLINAFYRAS 183

Query: 410 KPERAIKIFAKMRQK-LRPDIRTYELLFSLF---GNVNAPYEEGNMFSQVDSAKRINAIE 465
           +   A     KM+   + PD+ T  +L S     G+V    E       +D  K    + 
Sbjct: 184 RIREACAFREKMKAAGINPDVLTCNILVSGICKDGDVEEALE------ILDGMKLAGPVP 237

Query: 466 MDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEA 522
             +  N+I H          AL   G + E  +     KT   +P   T+NT+L    +A
Sbjct: 238 DVITYNSIIH----------ALCVAGKVVEAAEIL---KTMSCSPDLVTFNTLLDGFCKA 284

Query: 523 QESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTY 582
               RA+E+ ++M    I P+  TY I+++    +   + A  L+  +VR G+ P  + Y
Sbjct: 285 GMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAY 344

Query: 583 TALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642
           T+L+  L   G+ +EA  L+  +S+ G    V++Y++++   C  G +     I+ +M  
Sbjct: 345 TSLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSGYCRAGNVHKAREILAEMVS 404

Query: 643 NKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
             + P   T + V  G +  G  + A+  +  L  R    +V T
Sbjct: 405 INMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVT 448



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 132/579 (22%), Positives = 230/579 (39%), Gaps = 37/579 (6%)

Query: 90  FFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLG 149
           + H+L+   +S       + ++ +       N   + ++++  CK G    A   +  L 
Sbjct: 30  YNHLLDILVKSGHHFRTGKVYKDLLHSGCSPNLVTFKILIRGNCKAGQAMRALEFLRALD 89

Query: 150 ERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNL 209
           E + + P + ++N  +    K  +   A    + M+S  V    VTY  ++       NL
Sbjct: 90  E-FSVAPDVYIFNVLIHGLFKDGNPDQAVKLFENMESSRVKPEIVTYNTVISGLCKSGNL 148

Query: 210 SAVHEIWEDYIKHYSLS---IFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGK-LYIN 265
               E+ E+ I+    S   I +    + +F R   ++ A    + M A  +    L  N
Sbjct: 149 EKARELLEEMIRKGGKSAPDIVTYNTLINAFYRASRIREACAFREKMKAAGINPDVLTCN 208

Query: 266 RTSEGRLRSSRLDIPIPLNALPVMKVLR-----WSFSDVIHA-CGRTQNSGLAEQLMLQM 319
               G  +    D+   L  L  MK+        +++ +IHA C   +    AE L    
Sbjct: 209 ILVSGICKDG--DVEEALEILDGMKLAGPVPDVITYNSIIHALCVAGKVVEAAEILKTMS 266

Query: 320 QSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALEL 379
            S  L   +   DGF +A +  R L    EVL+ M + N+ P   T   L     +  ++
Sbjct: 267 CSPDLVTFNTLLDGFCKAGMLPRAL----EVLEEMCRENILPDVITYTILVNGLCRVGQV 322

Query: 380 DLAEALLDQISRCTNPKPFSAFLAACDTMDKP---ERAIKIFAKMRQKLRPDIRTYELLF 436
            +A  LL++I R        A+ +  D + K    E A K+  +M  +     RT  +++
Sbjct: 323 QVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVR---GCRTGVVMY 379

Query: 437 SLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIREL 496
           S    V+     GN    V  A+ I A   +M   N+     +   +L  L  +G I + 
Sbjct: 380 SSL--VSGYCRAGN----VHKAREILA---EMVSINMVPPLFTYNIVLGGLIKDGSISKA 430

Query: 497 IQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATY-NIMID 552
           +    D       P   TYNT++  L +A     A ++  +M + G  PN  T  +++  
Sbjct: 431 VSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADEMASRGCFPNDVTLGSVVFG 490

Query: 553 CCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPH 612
            C + R    A +LV  M R    P  + YT+LI  L      D+A  +LD +  +G+  
Sbjct: 491 LCRVGR-VDDAWSLVVEMSRKRHAPNVVVYTSLIDGLCKSDRMDDACMVLDAMRGQGVAL 549

Query: 613 DVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
           D   Y  ++      GR+     + ++M      PD ST
Sbjct: 550 DDFAYRKLIVSMSHGGRVAEAMAMYDEMVARGFLPDGST 588



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 80/385 (20%), Positives = 150/385 (38%), Gaps = 29/385 (7%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQ--PSSHTYDGFIRAIVSDRGLRNGMEVLK 352
           +++ VI    ++ N   A +L+ +M   G +  P   TY+  I A      +R      +
Sbjct: 134 TYNTVISGLCKSGNLEKARELLEEMIRKGGKSAPDIVTYNTLINAFYRASRIREACAFRE 193

Query: 353 IMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTM 408
            M+   + P   T   L     K  +++ A  +LD + +   P P    +++ + A    
Sbjct: 194 KMKAAGINPDVLTCNILVSGICKDGDVEEALEILDGM-KLAGPVPDVITYNSIIHALCVA 252

Query: 409 DKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
            K   A +I   M     PD+ T+  L              + F +     R   +  +M
Sbjct: 253 GKVVEAAEILKTM--SCSPDLVTFNTLL-------------DGFCKAGMLPRALEVLEEM 297

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLG----TPTYNTVLHSLVEAQE 524
            R NI    I+   L+  L   G + ++  Y  +     G       Y +++  L ++ E
Sbjct: 298 CRENILPDVITYTILVNGLCRVGQV-QVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGE 356

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
              A ++ K+M   G       Y+ ++           A  +++ MV     P   TY  
Sbjct: 357 IEEAHKLVKEMSVRGCRTGVVMYSSLVSGYCRAGNVHKAREILAEMVSINMVPPLFTYNI 416

Query: 585 LIKILLDYGDFDEALNLL-DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
           ++  L+  G   +A++L+ DLV+   +P DV+ YNT++   C+  R+     + ++M   
Sbjct: 417 VLGGLIKDGSISKAVSLISDLVARGYVP-DVVTYNTLIDGLCKANRVREACDLADEMASR 475

Query: 644 KVQPDPSTCHFVFSGYVNCGFHNSA 668
              P+  T   V  G    G  + A
Sbjct: 476 GCFPNDVTLGSVVFGLCRVGRVDDA 500



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 74/155 (47%), Gaps = 10/155 (6%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI--DCCSIIRCFKSASALVS 568
           +YN +L  LV++    R  +++K +   G  PN  T+ I+I  +C    +  ++  AL  
Sbjct: 29  SYNHLLDILVKSGHHFRTGKVYKDLLHSGCSPNLVTFKILIRGNC----KAGQAMRALEF 84

Query: 569 MMVRDGF--YPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE 626
           +   D F   P    +  LI  L   G+ D+A+ L + +    +  +++ YNT++   C+
Sbjct: 85  LRALDEFSVAPDVYIFNVLIHGLFKDGNPDQAVKLFENMESSRVKPEIVTYNTVISGLCK 144

Query: 627 KGRIDVIEFIIEQM--HQNKVQPDPSTCHFVFSGY 659
            G ++    ++E+M     K  PD  T + + + +
Sbjct: 145 SGNLEKARELLEEMIRKGGKSAPDIVTYNTLINAF 179


>gi|222636130|gb|EEE66262.1| hypothetical protein OsJ_22447 [Oryza sativa Japonica Group]
          Length = 876

 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 121/577 (20%), Positives = 222/577 (38%), Gaps = 81/577 (14%)

Query: 97  CARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYP 156
           C R    LF+M     M+      N + +  ++  LCK G + +A  L++    + G+ P
Sbjct: 153 CVRKALVLFLM-----MKRDGCSPNVRAFTFLISGLCKSGRVGDA-RLLFDAMPQNGVVP 206

Query: 157 ILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIW 216
            +  YN+ +   +KL  M  A    +LM+      ++ TY  L+     QK   A  E+ 
Sbjct: 207 SVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLCDQKTEEA-EELL 265

Query: 217 EDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSR 276
            + +K            V +FT L +     E      AL M  K+  ++         +
Sbjct: 266 NNAVKE------GFTPTVVTFTNLINGYCMAEKFDD--ALRMKNKMMSSK--------CK 309

Query: 277 LDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIR 336
           LD+ +              F  +I++  +      A++L+ ++ + GL P+  TY   I 
Sbjct: 310 LDLQV--------------FGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIID 355

Query: 337 AIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPK 396
                  +   +EVLK+M+++  +P   T  +L     K  +L  A ALL ++ +     
Sbjct: 356 GYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQK----- 410

Query: 397 PFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVD 456
                                       + P++ TY  L  L G  +            D
Sbjct: 411 --------------------------DGIIPNVITYTTL--LQGQCDE--------HDFD 434

Query: 457 SAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVL 516
           +A R+   EM M +N ++    +   L  AL   G   E   +       L    Y T++
Sbjct: 435 NAFRL--FEM-MEQNGLKPDEHAYAVLTDALCKAGRAEEAYSFIVRKGVALTKVYYTTLI 491

Query: 517 HSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFY 576
               +A  +  A  + ++M   G  P++ TY++++      +    A  ++  M   G  
Sbjct: 492 DGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIK 551

Query: 577 PQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFI 636
                YT LI  +L  G  D A  + + ++  G       Y   +   C++GR++  E +
Sbjct: 552 CTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDL 611

Query: 637 IEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           I +M +  V PD  T + +  G  + G+ + A   L+
Sbjct: 612 ILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLK 648



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 116/529 (21%), Positives = 215/529 (40%), Gaps = 66/529 (12%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y  ++   CK G ++ A  ++  + ER G  P    YNS +    K   +  A   L  M
Sbjct: 350 YTSIIDGYCKSGKVDIALEVLKMM-ERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKM 408

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLK 244
               +  N +TYT LL+    + +      ++E                +     L+  +
Sbjct: 409 QKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFE----------------MMEQNGLKPDE 452

Query: 245 SAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACG 304
            AY  L    AL   G            R+      I    + + KV    ++ +I    
Sbjct: 453 HAYAVLTD--ALCKAG------------RAEEAYSFIVRKGVALTKVY---YTTLIDGFS 495

Query: 305 RTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDS 364
           +  N+  A  L+ +M   G  P S+TY   + A+   + L    E L I+ Q +L+    
Sbjct: 496 KAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLN---EALPILDQMSLRGIKC 552

Query: 365 TIATLSVECSKAL---ELDLAEALLDQISRCTNPKP----FSAFLAACDTMDKPERAIKI 417
           TI   ++   + L   + D A+ + ++++  +  KP    ++ F+ +     + E A  +
Sbjct: 553 TIFAYTILIDEMLREGKHDHAKRMYNEMTS-SGHKPSATTYTVFINSYCKEGRLEDAEDL 611

Query: 418 FAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI--NAIEMDMARNNIQ 474
             KM R+ + PD+ TY +L    G++      G +     + KR+   + E +     + 
Sbjct: 612 ILKMEREGVAPDVVTYNILIDGCGHM------GYIDRAFSTLKRMVGASCEPNYWTYCLL 665

Query: 475 HSHISMKNL--LKALGAEGMIR--------ELIQYFCDSKTPLGTPTYNTVLHSLVEAQE 524
             H+   NL  ++++   GM          +L++            TY++++    +A  
Sbjct: 666 LKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLERMVKHGLNPTVTTYSSLIAGFCKAGR 725

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
              A  +   M   G+ PN   Y ++I CC   + F+ A + VS+M   GF PQ  +Y  
Sbjct: 726 LEEACLLLDHMCGKGLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMSECGFQPQLESYRL 785

Query: 585 LIKILLDYGDFDEALNLL-DLVSLEGIPHDVLLYNTILKKACEKGRIDV 632
           L+  L + GDF++  +L  DL+ L G  HD + +  +     + G +D+
Sbjct: 786 LVVGLCNEGDFEKVKSLFCDLLEL-GYNHDEVAWKILNDGLLKAGYVDI 833



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 70/353 (19%), Positives = 142/353 (40%), Gaps = 27/353 (7%)

Query: 318 QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKAL 377
           Q+   GL P + TY+  I++   +  L       +++ +  L+P+  T   L +   +  
Sbjct: 58  QLVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRYFRLLLEGGLEPETFTCNALVLGYCRTG 117

Query: 378 ELDLA--EALLDQISRCT-NPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYE 433
           EL  A    L+  +  C  N   ++  +          +A+ +F  M R    P++R + 
Sbjct: 118 ELRKACWLFLMMPLMGCQRNEYSYTILIQGLCDAKCVRKALVLFLMMKRDGCSPNVRAFT 177

Query: 434 LLFSLF------GNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL 487
            L S        G+    ++       V S    NA+ +  ++    +  + +K L++  
Sbjct: 178 FLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKN 237

Query: 488 GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATY 547
           G                      TYNT+++ L + Q++  A E+       G  P   T+
Sbjct: 238 GCHP----------------DDWTYNTLIYGLCD-QKTEEAEELLNNAVKEGFTPTVVTF 280

Query: 548 NIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSL 607
             +I+   +   F  A  + + M+          +  LI  L+      EA  LL+ +S 
Sbjct: 281 TNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISA 340

Query: 608 EGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYV 660
            G+  +V+ Y +I+   C+ G++D+   +++ M ++  QP+  T + +  G V
Sbjct: 341 NGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLV 393



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 87/210 (41%), Gaps = 3/210 (1%)

Query: 452 FSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYF---CDSKTPLG 508
            ++ D  + +  +   + ++ +    ++   ++K+   EG +    +YF    +      
Sbjct: 43  LARFDMTEYMGRVYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRYFRLLLEGGLEPE 102

Query: 509 TPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVS 568
           T T N ++       E  +A  +F  M   G   N  +Y I+I      +C + A  L  
Sbjct: 103 TFTCNALVLGYCRTGELRKACWLFLMMPLMGCQRNEYSYTILIQGLCDAKCVRKALVLFL 162

Query: 569 MMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
           MM RDG  P    +T LI  L   G   +A  L D +   G+   V+ YN ++    + G
Sbjct: 163 MMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLG 222

Query: 629 RIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
           R++    I E M +N   PD  T + +  G
Sbjct: 223 RMNDALKIKELMEKNGCHPDDWTYNTLIYG 252



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 86/199 (43%), Gaps = 1/199 (0%)

Query: 477 HISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMK 536
           + ++++L +    E M R   Q   D   P  T TYNT++ S  +  +   A   F+ + 
Sbjct: 37  NFALRSLARFDMTEYMGRVYSQLVQDGLLP-DTVTYNTMIKSYCKEGDLTTAHRYFRLLL 95

Query: 537 TCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFD 596
             G+ P   T N ++         + A  L  MM   G      +YT LI+ L D     
Sbjct: 96  EGGLEPETFTCNALVLGYCRTGELRKACWLFLMMPLMGCQRNEYSYTILIQGLCDAKCVR 155

Query: 597 EALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVF 656
           +AL L  ++  +G   +V  +  ++   C+ GR+     + + M QN V P   T + + 
Sbjct: 156 KALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMI 215

Query: 657 SGYVNCGFHNSAMEALQVL 675
            GY   G  N A++  +++
Sbjct: 216 VGYSKLGRMNDALKIKELM 234



 Score = 43.5 bits (101), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 85/412 (20%), Positives = 158/412 (38%), Gaps = 48/412 (11%)

Query: 110 WRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACA 169
           + MME+  +  +   Y ++  ALCK G  EEA + I     R G+      Y + +   +
Sbjct: 440 FEMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYSFIV----RKGVALTKVYYTTLIDGFS 495

Query: 170 KLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDY-IKHYSLSIF 228
           K  +   A   ++ M       +  TY+ LL     QK L+    I +   ++    +IF
Sbjct: 496 KAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIF 555

Query: 229 SLRKFVWSFTRLRDLKSAYETLQHMVA-----LAMMGKLYINR-TSEGRLRSSRLDIPIP 282
           +    +    R      A      M +      A    ++IN    EGRL  +  D+ + 
Sbjct: 556 AYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAE-DLILK 614

Query: 283 LNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYD---------- 332
           +    V   +  +++ +I  CG       A   + +M     +P+  TY           
Sbjct: 615 MEREGVAPDVV-TYNILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLKHLLKGN 673

Query: 333 -GFIRAIVSDRGLRNGME------VLKIMQQNNLKPQDSTIATLSVECSKALELDLAEAL 385
             ++R+ V   G+ N +E      +L+ M ++ L P  +T ++L     KA  L+ A  L
Sbjct: 674 LAYVRS-VDTSGMWNLIELDITWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLL 732

Query: 386 LDQI---SRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGN 441
           LD +       N   ++  +  C      E+A+   + M +   +P + +Y LL     N
Sbjct: 733 LDHMCGKGLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMSECGFQPQLESYRLLVVGLCN 792

Query: 442 VNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMI 493
                 EG+        +++ ++  D+      H  ++ K L   L   G +
Sbjct: 793 ------EGDF-------EKVKSLFCDLLELGYNHDEVAWKILNDGLLKAGYV 831


>gi|357449261|ref|XP_003594907.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483955|gb|AES65158.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1385

 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 82/167 (49%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           T N VL SLV+ +E       FK+M    + PN AT+NI+++       FKSA  L+  M
Sbjct: 146 TCNMVLGSLVKDREVDLFWSFFKEMIANRVSPNVATFNILLNALCERGKFKSAGVLLRKM 205

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
              G +P  +TY  L+      G +  A  L+D ++ +GI  DV  YN ++   C K R 
Sbjct: 206 DETGHFPTAVTYNTLLNWYCKKGRYKAASELIDAMASKGIAADVCTYNVLIDDLCRKSRS 265

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSM 677
                I+ +M +N V P+  T + + +G V  G    A +  + +S+
Sbjct: 266 AKGYLILRRMRKNMVYPNEITYNTLINGLVKEGKIGVATKVFEEMSL 312



 Score = 76.6 bits (187), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 149/703 (21%), Positives = 271/703 (38%), Gaps = 108/703 (15%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y  ++   CK G  + AS LI  +  + GI   +  YN  +    +        L L  M
Sbjct: 217 YNTLLNWYCKKGRYKAASELIDAMASK-GIAADVCTYNVLIDDLCRKSRSAKGYLILRRM 275

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDY-IKHYSLSIFSLRKFVWSFTRLRDL 243
              MV  NE+TY  L+   V +  +    +++E+  + +   +  +    ++      ++
Sbjct: 276 RKNMVYPNEITYNTLINGLVKEGKIGVATKVFEEMSLCNLLPNSVTYNTLIFGHCSNGNI 335

Query: 244 KSAYETLQHMVALAM------MGKLY--INRTSEGRLRSSRLDIPIPLNALPVMKVLRWS 295
           + A      MV+  +       G L   I++ ++  L SS L+       +  ++V   S
Sbjct: 336 EEALRLCDVMVSHGLRPNEVTYGALLNGISKHAQFGLVSSVLE----RMRMDGVRVGHIS 391

Query: 296 FSDVIHACGRTQNSGLAE--QLMLQMQSLGLQPSSHTY----DGFIR-AIVSDR------ 342
           ++ +I   G  +N  L E  QL+  M  + + P   T+    +GF++  +V +R      
Sbjct: 392 YTTMID--GLCKNGLLEEAVQLLDDMLKVSVSPDIVTFSVLVNGFLKTGLVPNRVLHSTL 449

Query: 343 --------GLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTN 394
                    L+  +    +M Q+       T + L     +   L+ AE  +D +SR   
Sbjct: 450 IYNYCKMGNLKEALNAYAVMNQSGHVSDHFTSSVLVASFCRCGRLEEAEYFVDHMSRMGL 509

Query: 395 PKPFSAFLAACDTMDKPERAIK---IFAKMRQKLR-PDIRTYELLFSLFGNV-------- 442
                 F    DT      A+K   +F KM      P   TYE L               
Sbjct: 510 APSSVTFDCIIDTYGNSGDALKAFSVFDKMNSLGHLPSQFTYEGLLKGLLIGGHINEAKI 569

Query: 443 ------NAPYEEGNMFSQV------DSAKRINAIEM--DMARNNIQHSHISMKNLLKALG 488
                 + PY  G+ F          S    NA+ +  +M  NN      +  +L+  L 
Sbjct: 570 FMHRPSSIPYAIGSTFYNTMLTLTSRSGNLSNAVALLDEMVMNNFVPDSFTYTSLIAGLC 629

Query: 489 AEG-MIRELIQYFCDSKTPLGTPT---YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNA 544
            +G M+  L+      +  L +P    Y +++  L++   S  A+ +F+ M   G+ P+A
Sbjct: 630 RKGKMVPALLLSGRAIEKGLLSPNPAMYTSLVDGLLKEGHSKAALYMFEDMLNEGVQPDA 689

Query: 545 -----------------------------------ATYNIMIDCCSIIRCFKSASALVSM 569
                                              ATYNI++   S        S L + 
Sbjct: 690 IAFNVLLDRYSRKGKMSKVNDILSTMRSRSLCFNLATYNILLHGYSKRHGMARCSKLYNE 749

Query: 570 MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
           M+  GF P  +T+ +LI      G  D A+  L  +++EG   D    N ++ K CE+  
Sbjct: 750 MIIHGFAPDRLTWHSLILGYCKSGSLDVAVKFLRKITVEGFKVDCFTLNVLVSKLCERNE 809

Query: 630 IDVIEFIIEQMHQNKVQPDPSTCHFVFSGYV-NCGFHNS--AMEALQVLSMRMLCEEVST 686
           I +   +++Q++   V P+  T + +F+G+V  C F  +   + AL        C++ +T
Sbjct: 810 IKMAFDLVKQLNMLGVTPNVDTYNSLFNGFVRTCSFDEARCILHALLENGYAPTCKQFTT 869

Query: 687 LEEKRSDFEDLILAEDSEAESRILQFCEDSNENLAFTAALLQL 729
           L        ++  A + + E +IL     S++ +A +A +  L
Sbjct: 870 LIRGMCRMGNVKGAMELQDEMKILGV---SSQGVAMSAIIRGL 909



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 105/507 (20%), Positives = 198/507 (39%), Gaps = 69/507 (13%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ +I+   +    G+A ++  +M    L P+S TY+  I    S+  +   + +  +M
Sbjct: 286 TYNTLINGLVKEGKIGVATKVFEEMSLCNLLPNSVTYNTLIFGHCSNGNIEEALRLCDVM 345

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKP--- 411
             + L+P + T   L    SK  +  L  ++L+++          ++    D + K    
Sbjct: 346 VSHGLRPNEVTYGALLNGISKHAQFGLVSSVLERMRMDGVRVGHISYTTMIDGLCKNGLL 405

Query: 412 ERAIKIFAKM-RQKLRPDIRTYELLFSLF---GNV-NAPYEEGNMFSQVDSAKRINAIEM 466
           E A+++   M +  + PDI T+ +L + F   G V N       +++         A+  
Sbjct: 406 EEAVQLLDDMLKVSVSPDIVTFSVLVNGFLKTGLVPNRVLHSTLIYNYCKMGNLKEALNA 465

Query: 467 DMARNNIQH--SHISMKNLLKALGAEGMIRELIQYFCDSKTPLG----TPTYNTVLHSLV 520
               N   H   H +   L+ +    G + E  +YF D  + +G    + T++ ++ +  
Sbjct: 466 YAVMNQSGHVSDHFTSSVLVASFCRCGRLEE-AEYFVDHMSRMGLAPSSVTFDCIIDTYG 524

Query: 521 EAQESHRAMEIFKQMKTCGIPPNAATY--------------------------------- 547
            + ++ +A  +F +M + G  P+  TY                                 
Sbjct: 525 NSGDALKAFSVFDKMNSLGHLPSQFTYEGLLKGLLIGGHINEAKIFMHRPSSIPYAIGST 584

Query: 548 --NIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLV 605
             N M+   S      +A AL+  MV + F P + TYT+LI  L   G    AL    L+
Sbjct: 585 FYNTMLTLTSRSGNLSNAVALLDEMVMNNFVPDSFTYTSLIAGLCRKGKMVPAL----LL 640

Query: 606 SLEGIPHDVL-----LYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYV 660
           S   I   +L     +Y +++    ++G      ++ E M    VQPD    + +   Y 
Sbjct: 641 SGRAIEKGLLSPNPAMYTSLVDGLLKEGHSKAALYMFEDMLNEGVQPDAIAFNVLLDRYS 700

Query: 661 NCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDFEDLILAEDSEAESRILQFCEDSNENL 720
             G  +   + L  +  R LC  ++T           IL         + +  +  NE +
Sbjct: 701 RKGKMSKVNDILSTMRSRSLCFNLATYN---------ILLHGYSKRHGMARCSKLYNEMI 751

Query: 721 AFTAALLQLRWCT-IVGFPISWSLDRA 746
               A  +L W + I+G+  S SLD A
Sbjct: 752 IHGFAPDRLTWHSLILGYCKSGSLDVA 778



 Score = 55.1 bits (131), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 75/342 (21%), Positives = 133/342 (38%), Gaps = 20/342 (5%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           F  +I  C R    G A +    M   G  PS  T +  + ++V DR +       K M 
Sbjct: 112 FDLLIRVCLRENMVGDAVEAFRLMGFRGFSPSVFTCNMVLGSLVKDREVDLFWSFFKEMI 171

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALL---DQISRCTNPKPFSAFLAACDTMDKPE 412
            N + P  +T   L     +  +   A  LL   D+         ++  L       + +
Sbjct: 172 ANRVSPNVATFNILLNALCERGKFKSAGVLLRKMDETGHFPTAVTYNTLLNWYCKKGRYK 231

Query: 413 RAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471
            A ++   M  K +  D+ TY +L              ++  +  SAK    I   M +N
Sbjct: 232 AASELIDAMASKGIAADVCTYNVLID------------DLCRKSRSAKGY-LILRRMRKN 278

Query: 472 NIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRA 528
            +  + I+   L+  L  EG I    + F +       P   TYNT++           A
Sbjct: 279 MVYPNEITYNTLINGLVKEGKIGVATKVFEEMSLCNLLPNSVTYNTLIFGHCSNGNIEEA 338

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
           + +   M + G+ PN  TY  +++  S    F   S+++  M  DG     ++YT +I  
Sbjct: 339 LRLCDVMVSHGLRPNEVTYGALLNGISKHAQFGLVSSVLERMRMDGVRVGHISYTTMIDG 398

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           L   G  +EA+ LLD +    +  D++ ++ ++    + G +
Sbjct: 399 LCKNGLLEEAVQLLDDMLKVSVSPDIVTFSVLVNGFLKTGLV 440



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 72/165 (43%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           T N ++  L E  E   A ++ KQ+   G+ PN  TYN + +       F  A  ++  +
Sbjct: 796 TLNVLVSKLCERNEIKMAFDLVKQLNMLGVTPNVDTYNSLFNGFVRTCSFDEARCILHAL 855

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           + +G+ P    +T LI+ +   G+   A+ L D + + G+    +  + I++      + 
Sbjct: 856 LENGYAPTCKQFTTLIRGMCRMGNVKGAMELQDEMKILGVSSQGVAMSAIIRGLARSRKT 915

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
           D    I+  M + ++ P  +T   +   Y   G    A+E   V+
Sbjct: 916 DEATRILGIMLEMQIIPTVATFTTLMHTYCKEGNVAKALELRSVM 960



 Score = 48.9 bits (115), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 31/139 (22%), Positives = 59/139 (42%)

Query: 512  YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
            + T++  +        AME+  +MK  G+       + +I   +  R    A+ ++ +M+
Sbjct: 867  FTTLIRGMCRMGNVKGAMELQDEMKILGVSSQGVAMSAIIRGLARSRKTDEATRILGIML 926

Query: 572  RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
                 P   T+T L+      G+  +AL L  ++    +  DV  YN ++   C  G I 
Sbjct: 927  EMQIIPTVATFTTLMHTYCKEGNVAKALELRSVMEQCHVKLDVAAYNVLISGLCADGDIQ 986

Query: 632  VIEFIIEQMHQNKVQPDPS 650
                + E+M Q  + P+ S
Sbjct: 987  AAFKLYEEMEQRDIWPNTS 1005


>gi|15219527|ref|NP_177512.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169780|sp|Q9C9U0.1|PP118_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g73710
 gi|12324197|gb|AAG52063.1|AC012679_1 hypothetical protein; 49134-52109 [Arabidopsis thaliana]
 gi|332197379|gb|AEE35500.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 991

 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/257 (24%), Positives = 116/257 (45%), Gaps = 15/257 (5%)

Query: 421 MRQKLR-PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRIN----AIEMDMARNNIQH 475
           M Q++  PD  T   +  +F N +  ++  + F +   A +++    +I+ D  +N    
Sbjct: 206 MGQRMHFPDEVTMATVVRVFKN-SGEFDRADRFFKGWCAGKVDLDLDSID-DFPKNGSAQ 263

Query: 476 SHISMKNLLK----ALGAEGMIRELIQYFCDS----KTPLGTPTYNTVLHSLVEAQESHR 527
           S +++K  L      +GA   I + + +   S    + P  T T+NT++    +A   + 
Sbjct: 264 SPVNLKQFLSMELFKVGARNPIEKSLHFASGSDSSPRKPRLTSTFNTLIDLYGKAGRLND 323

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A  +F +M   G+P +  T+N MI  C        A +L+  M   G  P T TY  L+ 
Sbjct: 324 AANLFSEMLKSGVPIDTVTFNTMIHTCGTHGHLSEAESLLKKMEEKGISPDTKTYNILLS 383

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
           +  D GD + AL     +   G+  D + +  +L   C++  +  +E +I +M +N ++ 
Sbjct: 384 LHADAGDIEAALEYYRKIRKVGLFPDTVTHRAVLHILCQRKMVAEVEAVIAEMDRNSIRI 443

Query: 648 DPSTCHFVFSGYVNCGF 664
           D  +   +   YVN G 
Sbjct: 444 DEHSVPVIMQMYVNEGL 460



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 93/461 (20%), Positives = 187/461 (40%), Gaps = 47/461 (10%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRG-LRNGMEVLKI 353
           +F+ +IH CG   +   AE L+ +M+  G+ P + TY+  + ++ +D G +   +E  + 
Sbjct: 342 TFNTMIHTCGTHGHLSEAESLLKKMEEKGISPDTKTYN-ILLSLHADAGDIEAALEYYRK 400

Query: 354 MQQNNLKPQDST-IATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPE 412
           +++  L P   T  A L + C + +  ++ EA++ ++ R              +++   E
Sbjct: 401 IRKVGLFPDTVTHRAVLHILCQRKMVAEV-EAVIAEMDR--------------NSIRIDE 445

Query: 413 RAIKIFAKMRQKLRPDIRTYELL--FSL--------FGNVNAPYEEGNMFSQVDS---AK 459
            ++ +  +M       ++   L   F L           V   Y E  ++ + ++    K
Sbjct: 446 HSVPVIMQMYVNEGLVVQAKALFERFQLDCVLSSTTLAAVIDVYAEKGLWVEAETVFYGK 505

Query: 460 RINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVL 516
           R     M   RN++   ++    ++KA G   +  + +  F   K     P   TYN++ 
Sbjct: 506 R----NMSGQRNDVLEYNV----MIKAYGKAKLHEKALSLFKGMKNQGTWPDECTYNSLF 557

Query: 517 HSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFY 576
             L        A  I  +M   G  P   TY  MI     +     A  L   M + G  
Sbjct: 558 QMLAGVDLVDEAQRILAEMLDSGCKPGCKTYAAMIASYVRLGLLSDAVDLYEAMEKTGVK 617

Query: 577 PQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFI 636
           P  + Y +LI    + G  +EA+    ++   G+  + ++  +++K   + G ++    +
Sbjct: 618 PNEVVYGSLINGFAESGMVEEAIQYFRMMEEHGVQSNHIVLTSLIKAYSKVGCLEEARRV 677

Query: 637 IEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVS-----TLEEKR 691
            ++M  ++  PD +  + + S   + G  + A      L  +  C+ +S      L +  
Sbjct: 678 YDKMKDSEGGPDVAASNSMLSLCADLGIVSEAESIFNALREKGTCDVISFATMMYLYKGM 737

Query: 692 SDFEDLILAEDSEAESRILQFCEDSNENLAFTAALLQLRWC 732
              ++ I   +   ES +L  C   N+ +A  AA  QL  C
Sbjct: 738 GMLDEAIEVAEEMRESGLLSDCTSFNQVMACYAADGQLSEC 778



 Score = 65.9 bits (159), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 95/463 (20%), Positives = 175/463 (37%), Gaps = 93/463 (20%)

Query: 360 KPQ-DSTIATLSVECSKALELDLAEALLDQISRCTNP---KPFSAFLAACDTMDKPERAI 415
           KP+  ST  TL     KA  L+ A  L  ++ +   P     F+  +  C T      A 
Sbjct: 301 KPRLTSTFNTLIDLYGKAGRLNDAANLFSEMLKSGVPIDTVTFNTMIHTCGTHGHLSEAE 360

Query: 416 KIFAKMRQK-LRPDIRTYELLFSLF---GNVNAPYEEG-------------------NMF 452
            +  KM +K + PD +TY +L SL    G++ A  E                     ++ 
Sbjct: 361 SLLKKMEEKGISPDTKTYNILLSLHADAGDIEAALEYYRKIRKVGLFPDTVTHRAVLHIL 420

Query: 453 SQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMI---RELIQYF----CDSKT 505
            Q      + A+  +M RN+I+    S+  +++    EG++   + L + F      S T
Sbjct: 421 CQRKMVAEVEAVIAEMDRNSIRIDEHSVPVIMQMYVNEGLVVQAKALFERFQLDCVLSST 480

Query: 506 PLGTPT-------------------------------YNTVLHSLVEAQESHRAMEIFKQ 534
            L                                   YN ++ +  +A+   +A+ +FK 
Sbjct: 481 TLAAVIDVYAEKGLWVEAETVFYGKRNMSGQRNDVLEYNVMIKAYGKAKLHEKALSLFKG 540

Query: 535 MKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGD 594
           MK  G  P+  TYN +    + +     A  +++ M+  G  P   TY A+I   +  G 
Sbjct: 541 MKNQGTWPDECTYNSLFQMLAGVDLVDEAQRILAEMLDSGCKPGCKTYAAMIASYVRLGL 600

Query: 595 FDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHF 654
             +A++L + +   G+  + ++Y +++    E G ++        M ++ VQ +    H 
Sbjct: 601 LSDAVDLYEAMEKTGVKPNEVVYGSLINGFAESGMVEEAIQYFRMMEEHGVQSN----HI 656

Query: 655 VFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDFEDLILAE---DSEAESRILQ 711
           V +  +                      +V  LEE R  ++ +  +E   D  A + +L 
Sbjct: 657 VLTSLIKA------------------YSKVGCLEEARRVYDKMKDSEGGPDVAASNSMLS 698

Query: 712 FCED---SNENLAFTAALLQLRWCTIVGFPISWSLDRASGLED 751
            C D    +E  +   AL +   C ++ F     L +  G+ D
Sbjct: 699 LCADLGIVSEAESIFNALREKGTCDVISFATMMYLYKGMGMLD 741


>gi|255586139|ref|XP_002533731.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526356|gb|EEF28650.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/312 (22%), Positives = 125/312 (40%), Gaps = 51/312 (16%)

Query: 396 KPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQ 454
           + ++  L A     K  RAI+IF +M +  L P + TY ++  ++G +   ++       
Sbjct: 223 RAYTTILHAYSRTGKYHRAIEIFERMNESGLSPSLVTYNVMLDVYGKMGRSWD------- 275

Query: 455 VDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKT---PLGTPT 511
                +I  +  +M    +     +   +L A G EG+I E  ++F   K+     GT T
Sbjct: 276 -----KILELLDEMRSRGLDFDEFTCSTVLSACGREGLIDEAREFFSGLKSEGYKPGTVT 330

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMK----------------------------------- 536
           YN +LH   +A     A+ +  +M+                                   
Sbjct: 331 YNALLHVFGKAGIFSEALSVLSEMEENNCPPDAVTYNEVVAAYVRAGFHEEGAVVIDAMA 390

Query: 537 TCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFD 596
           + GI PNA TY  +I+    +     A  +   M+  G  P   TY A++ +L      +
Sbjct: 391 SKGIMPNAVTYTTIINAYGRVGDIDKALEMFDQMMELGCVPNVATYNAVLGMLGKKSLSE 450

Query: 597 EALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVF 656
           E + +L  + L G   + + +NT+L    +KG    +  +  +M     +PD  T + + 
Sbjct: 451 EMMKILGHMKLNGCSPNHITWNTMLAMCGKKGMHKYVNQVFREMKNCGFEPDRDTFNTLI 510

Query: 657 SGYVNCGFHNSA 668
           S Y  CG +N A
Sbjct: 511 SAYGRCGSNNDA 522



 Score = 80.9 bits (198), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 99/419 (23%), Positives = 170/419 (40%), Gaps = 30/419 (7%)

Query: 255 ALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQ 314
           A+ +M ++ + R S+  + S   D+ IPL+   V+ V   +++ ++HA  RT     A +
Sbjct: 189 AIELMVRI-LGRESQHTVASKLFDV-IPLDDY-VLDVR--AYTTILHAYSRTGKYHRAIE 243

Query: 315 LMLQMQSLGLQPSSHTYDGFIRAIVS-DRGLRNGMEVLKIMQQNNLKPQDSTIATLSVEC 373
           +  +M   GL PS  TY+  +       R     +E+L  M+   L   + T +T+   C
Sbjct: 244 IFERMNESGLSPSLVTYNVMLDVYGKMGRSWDKILELLDEMRSRGLDFDEFTCSTVLSAC 303

Query: 374 SKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDKPERAIKIFAKMRQK-LRPD 428
            +   +D A      + +    KP    ++A L           A+ + ++M +    PD
Sbjct: 304 GREGLIDEAREFFSGL-KSEGYKPGTVTYNALLHVFGKAGIFSEALSVLSEMEENNCPPD 362

Query: 429 IRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALG 488
             TY  + + +  V A + E       + A  I+A    MA   I  + ++   ++ A G
Sbjct: 363 AVTYNEVVAAY--VRAGFHE-------EGAVVIDA----MASKGIMPNAVTYTTIINAYG 409

Query: 489 AEGMIRELIQYFCDSKTPLG----TPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNA 544
             G I + ++ F D    LG      TYN VL  L +   S   M+I   MK  G  PN 
Sbjct: 410 RVGDIDKALEMF-DQMMELGCVPNVATYNAVLGMLGKKSLSEEMMKILGHMKLNGCSPNH 468

Query: 545 ATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDL 604
            T+N M+  C      K  + +   M   GF P   T+  LI      G  ++A  + + 
Sbjct: 469 ITWNTMLAMCGKKGMHKYVNQVFREMKNCGFEPDRDTFNTLISAYGRCGSNNDAAKMHEE 528

Query: 605 VSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
           +   G    +  YN +L     +G     E +I  M     +P  ++   +   Y   G
Sbjct: 529 MIKAGFSPCINTYNALLNALARRGDWKAAESVILDMRNKGFRPSETSYSLMVHSYAKGG 587



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 70/355 (19%), Positives = 136/355 (38%), Gaps = 49/355 (13%)

Query: 297 SDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQ 356
           S V+ ACGR      A +    ++S G +P + TY+  +            + VL  M++
Sbjct: 297 STVLSACGREGLIDEAREFFSGLKSEGYKPGTVTYNALLHVFGKAGIFSEALSVLSEMEE 356

Query: 357 NNLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKPER 413
           NN  P   T   +     +A   +    ++D ++      N   ++  + A   +   ++
Sbjct: 357 NNCPPDAVTYNEVVAAYVRAGFHEEGAVVIDAMASKGIMPNAVTYTTIINAYGRVGDIDK 416

Query: 414 AIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNN 472
           A+++F +M +    P++ TY  +  + G  +   E   +                M  N 
Sbjct: 417 ALEMFDQMMELGCVPNVATYNAVLGMLGKKSLSEEMMKILGH-------------MKLNG 463

Query: 473 IQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIF 532
              +HI+   +L   G +GM                        H  V         ++F
Sbjct: 464 CSPNHITWNTMLAMCGKKGM------------------------HKYVN--------QVF 491

Query: 533 KQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDY 592
           ++MK CG  P+  T+N +I           A+ +   M++ GF P   TY AL+  L   
Sbjct: 492 REMKNCGFEPDRDTFNTLISAYGRCGSNNDAAKMHEEMIKAGFSPCINTYNALLNALARR 551

Query: 593 GDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
           GD+  A +++  +  +G       Y+ ++    + G +  IE I + ++   + P
Sbjct: 552 GDWKAAESVILDMRNKGFRPSETSYSLMVHSYAKGGNVKGIEMIEKSIYDGDIFP 606



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 81/196 (41%), Gaps = 36/196 (18%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID------------------ 552
            Y T+LH+     + HRA+EIF++M   G+ P+  TYN+M+D                  
Sbjct: 224 AYTTILHAYSRTGKYHRAIEIFERMNESGLSPSLVTYNVMLDVYGKMGRSWDKILELLDE 283

Query: 553 ------------CCSIIRC------FKSASALVSMMVRDGFYPQTMTYTALIKILLDYGD 594
                       C +++           A    S +  +G+ P T+TY AL+ +    G 
Sbjct: 284 MRSRGLDFDEFTCSTVLSACGREGLIDEAREFFSGLKSEGYKPGTVTYNALLHVFGKAGI 343

Query: 595 FDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHF 654
           F EAL++L  +     P D + YN ++      G  +    +I+ M    + P+  T   
Sbjct: 344 FSEALSVLSEMEENNCPPDAVTYNEVVAAYVRAGFHEEGAVVIDAMASKGIMPNAVTYTT 403

Query: 655 VFSGYVNCGFHNSAME 670
           + + Y   G  + A+E
Sbjct: 404 IINAYGRVGDIDKALE 419



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 79/379 (20%), Positives = 152/379 (40%), Gaps = 26/379 (6%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ +I+A GR  +   A ++  QM  LG  P+  TY+  +  +         M++L  M
Sbjct: 400 TYTTIINAYGRVGDIDKALEMFDQMMELGCVPNVATYNAVLGMLGKKSLSEEMMKILGHM 459

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRC---TNPKPFSAFLAACDTMDKP 411
           + N   P   T  T+   C K         +  ++  C    +   F+  ++A       
Sbjct: 460 KLNGCSPNHITWNTMLAMCGKKGMHKYVNQVFREMKNCGFEPDRDTFNTLISAYGRCGSN 519

Query: 412 ERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
             A K+  +M +    P I TY  L              N  ++    K   ++ +DM  
Sbjct: 520 NDAAKMHEEMIKAGFSPCINTYNALL-------------NALARRGDWKAAESVILDMRN 566

Query: 471 NNIQHSHISMKNLLKALGAEGMIR--ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRA 528
              + S  S   ++ +    G ++  E+I+           P++  +L +LV A    R+
Sbjct: 567 KGFRPSETSYSLMVHSYAKGGNVKGIEMIEKSIYDGDIF--PSW-MLLRTLVLANFKCRS 623

Query: 529 M----EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
           +      F+ ++  G  P+    N M+   +    +  A  ++ ++   G  P  +T+ +
Sbjct: 624 LTGMERAFQALQKHGYKPDLVLCNSMLSIFAKNNMYDRAHEMLRLIHDAGLQPDLVTHNS 683

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
           L+ +    GD  +A  +L ++   G   D++ YNT++K  C KG +     I+ +M    
Sbjct: 684 LMDMYARGGDCWKAEEVLRMLQTSGGKPDLVSYNTVIKGFCRKGLMQEGIRILSEMTSIG 743

Query: 645 VQPDPSTCHFVFSGYVNCG 663
           V P   T +   SGY   G
Sbjct: 744 VGPCIFTYNTFISGYAAQG 762



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 100/506 (19%), Positives = 190/506 (37%), Gaps = 69/506 (13%)

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
           MEE     +   Y  ++ A  + G+ EE + +I  +  + GI P    Y + + A  ++ 
Sbjct: 354 MEENNCPPDAVTYNEVVAAYVRAGFHEEGAVVIDAMASK-GIMPNAVTYTTIINAYGRVG 412

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRK 232
            +  A    D M       N  TY  +L + + +K+LS   E     + H  L+  S   
Sbjct: 413 DIDKALEMFDQMMELGCVPNVATYNAVLGM-LGKKSLS---EEMMKILGHMKLNGCSPNH 468

Query: 233 FVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVL 292
             W+                   LAM GK  +++      R  +       N     +  
Sbjct: 469 ITWN-----------------TMLAMCGKKGMHKYVNQVFREMK-------NC--GFEPD 502

Query: 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
           R +F+ +I A GR  ++  A ++  +M   G  P  +TY+  + A+      +    V+ 
Sbjct: 503 RDTFNTLISAYGRCGSNNDAAKMHEEMIKAGFSPCINTYNALLNALARRGDWKAAESVIL 562

Query: 353 IMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLA--------- 403
            M+    +P +++ + +    +K   +   E +   I    +   F +++          
Sbjct: 563 DMRNKGFRPSETSYSLMVHSYAKGGNVKGIEMIEKSI---YDGDIFPSWMLLRTLVLANF 619

Query: 404 ACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINA 463
            C ++   ERA +   K     +PD+     + S+F   N       M   +  A     
Sbjct: 620 KCRSLTGMERAFQALQK--HGYKPDLVLCNSMLSIFAKNNMYDRAHEMLRLIHDA----G 673

Query: 464 IEMDMARNNIQHSHISMKNLLKALG----AEGMIRELIQYFCDSKTPLGTP---TYNTVL 516
           ++ D+       +H S+ ++    G    AE ++R L       +T  G P   +YNTV+
Sbjct: 674 LQPDLV------THNSLMDMYARGGDCWKAEEVLRML-------QTSGGKPDLVSYNTVI 720

Query: 517 HSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFY 576
                       + I  +M + G+ P   TYN  I   +    F   + ++S M+     
Sbjct: 721 KGFCRKGLMQEGIRILSEMTSIGVGPCIFTYNTFISGYAAQGMFTEINDVISYMIVHNCR 780

Query: 577 PQTMTYTALIKILLDYGDFDEALNLL 602
           P  +TY  +         +DEA++ +
Sbjct: 781 PNELTYKIVADGYCKARRYDEAIDFV 806


>gi|90399139|emb|CAJ86163.1| H0913C04.4 [Oryza sativa Indica Group]
 gi|125550286|gb|EAY96108.1| hypothetical protein OsI_17985 [Oryza sativa Indica Group]
          Length = 900

 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 89/428 (20%), Positives = 165/428 (38%), Gaps = 57/428 (13%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           +S++IHA  ++ N   AE+L+ +M+  G+      Y   +      +     + V + ++
Sbjct: 371 YSNIIHAHCQSGNMERAEELVCEMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLK 430

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT---NPKPFSAFLAACDTMDKPE 412
           +   KP   +   L     K  ++  A ++  ++  C    N K +S  +     +    
Sbjct: 431 ECGFKPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFA 490

Query: 413 RAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471
            A  IF +M R  L+PD   Y LL   F  +      GNM        R   I   M + 
Sbjct: 491 NAFAIFEEMLRSGLQPDRAIYNLLIEAFCKM------GNM-------DRAICILEKMQKE 537

Query: 472 NIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPT---YNTVLHSLVEAQESHRA 528
            +Q S+ + + +++     G ++  +      +     PT   YN ++H LV   +  RA
Sbjct: 538 RMQPSNRAFRPIIEGYAVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRA 597

Query: 529 MEIFKQMKTCGIPPNAATYNIMID------------------------------------ 552
           + +  +M   GI PN  TY I++                                     
Sbjct: 598 VSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRA 657

Query: 553 CCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPH 612
           CC   R  +SA A+   M        T  Y  LI      GD  EA +L+  +  +G+P 
Sbjct: 658 CCKSGR-MQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPP 716

Query: 613 DVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEAL 672
           ++  Y + +   C+ G +   E +IE+M    ++P+  T   +  G+      + A++  
Sbjct: 717 NIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWARVSLPDRALKCF 776

Query: 673 QVLSMRML 680
           + + +  L
Sbjct: 777 EEMKLAGL 784



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/248 (23%), Positives = 114/248 (45%), Gaps = 12/248 (4%)

Query: 429 IRTYELLFSLFGNVNAPYEEGNMFSQVDSA-KRINAIEMDMARNNIQHSHISMKNLLKAL 487
           I TY +L S F  +N      N+F +  +    +N I      +NI H+H    N+ +A 
Sbjct: 333 IVTYSILISGFAKINDSQSADNLFKEAKTKLSSLNGI----IYSNIIHAHCQSGNMERA- 387

Query: 488 GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATY 547
             E ++ E+ +   D+   +    Y++++H     Q  ++ + +F+++K CG  P+  +Y
Sbjct: 388 --EELVCEMEEDGIDAPIDV----YHSMMHGYTIIQNENKCLVVFERLKECGFKPSIISY 441

Query: 548 NIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSL 607
             +++    I     A ++   M   G      TY+ LI   +   DF  A  + + +  
Sbjct: 442 GCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAIFEEMLR 501

Query: 608 EGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNS 667
            G+  D  +YN +++  C+ G +D    I+E+M + ++QP       +  GY   G   S
Sbjct: 502 SGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVAGDMKS 561

Query: 668 AMEALQVL 675
           A++ L ++
Sbjct: 562 ALDTLDLM 569



 Score = 40.0 bits (92), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 1/109 (0%)

Query: 93  ILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERY 152
           +L  C +S      +   R M  ++I  N   Y +++    + G + EA +L+  + E  
Sbjct: 654 LLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKED- 712

Query: 153 GIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLK 201
           G+ P +  Y S++ AC K   M  A   ++ M    +  N  TYT L+K
Sbjct: 713 GVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIK 761


>gi|449455399|ref|XP_004145440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g35130-like [Cucumis sativus]
          Length = 576

 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 76/343 (22%), Positives = 150/343 (43%), Gaps = 21/343 (6%)

Query: 351 LKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT-NPKP--FSAFLAACDT 407
           L++++ + +  +D+    L   C   L L+ AEA+  ++ +   +P    ++A++     
Sbjct: 179 LELLESHCIPTEDTYALLLKAYCKSGL-LEKAEAVFAEMRKYGLSPSAIVYNAYIDGLVK 237

Query: 408 MDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM 466
                +A++IF +M R   +P   TY +L +++G  +  +   N+F ++ + +       
Sbjct: 238 GGNNVKAVEIFHRMKRDGCQPTTDTYTMLINVYGKESKSHMAQNIFDEMRTQR------- 290

Query: 467 DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQ 523
              + NI     +   L+ AL  EG+  +  + F   +     P    YN ++ S   A 
Sbjct: 291 --CKPNI----CTFTALVNALAREGLCEKAEEIFEQMQEAGYEPDVYAYNALMESYSRAG 344

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
             + A EIF  M+  G  P+ A+YNIM+D        + A A+   M R G  P   ++ 
Sbjct: 345 FPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEEMKRIGITPTMKSHM 404

Query: 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
            L+      G+  +  +++  +   G+  D  + N++L      G+   +E +   M + 
Sbjct: 405 LLLSAYSSAGNVAKCEDIIGQMHKSGLKPDTFVMNSMLNLYGRLGQFGKMEDLFSTMQKG 464

Query: 644 KVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
             + D ST + + + Y   GF     E  Q+L  + L  +V T
Sbjct: 465 PCRADISTYNILINVYGRAGFVERMEELFQLLPAKNLEPDVVT 507



 Score = 76.3 bits (186), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 82/359 (22%), Positives = 140/359 (38%), Gaps = 23/359 (6%)

Query: 309 SGL---AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDST 365
           SGL   AE +  +M+  GL PS+  Y+ +I  +V        +E+   M+++  +P   T
Sbjct: 203 SGLLEKAEAVFAEMRKYGLSPSAIVYNAYIDGLVKGGNNVKAVEIFHRMKRDGCQPTTDT 262

Query: 366 IATLSVECSKALELDLAEALLDQI--SRCT-NPKPFSAFLAACDTMDKPERAIKIFAKMR 422
              L     K  +  +A+ + D++   RC  N   F+A + A       E+A +IF +M+
Sbjct: 263 YTMLINVYGKESKSHMAQNIFDEMRTQRCKPNICTFTALVNALAREGLCEKAEEIFEQMQ 322

Query: 423 QK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMK 481
           +    PD+  Y  L   +     PY    +FS +         E D A  NI        
Sbjct: 323 EAGYEPDVYAYNALMESYSRAGFPYGAAEIFSLMQHM----GCEPDRASYNI-------- 370

Query: 482 NLLKALGAEGMIRELIQYFCDSKTPLGTPTYNT---VLHSLVEAQESHRAMEIFKQMKTC 538
            ++ A G  G+  +    F + K    TPT  +   +L +   A    +  +I  QM   
Sbjct: 371 -MVDAYGRAGLHEDAQAVFEEMKRIGITPTMKSHMLLLSAYSSAGNVAKCEDIIGQMHKS 429

Query: 539 GIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEA 598
           G+ P+    N M++    +  F     L S M +        TY  LI +    G  +  
Sbjct: 430 GLKPDTFVMNSMLNLYGRLGQFGKMEDLFSTMQKGPCRADISTYNILINVYGRAGFVERM 489

Query: 599 LNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFS 657
             L  L+  + +  DV+ + + +     K        + E+M      PD  T   + S
Sbjct: 490 EELFQLLPAKNLEPDVVTWTSRIGAYSRKKLYKRCLELFEKMIDAGCYPDGGTAKVLLS 548



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/255 (21%), Positives = 100/255 (39%), Gaps = 16/255 (6%)

Query: 422 RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMK 481
           +   RPD+  Y LL   +G             Q    K + +  +++  ++   +  +  
Sbjct: 148 KSTFRPDVIVYNLLMDAYG-------------QRSLYKDVESTYLELLESHCIPTEDTYA 194

Query: 482 NLLKALGAEGMIRELIQYFCDSKTPLGTPT---YNTVLHSLVEAQESHRAMEIFKQMKTC 538
            LLKA    G++ +    F + +    +P+   YN  +  LV+   + +A+EIF +MK  
Sbjct: 195 LLLKAYCKSGLLEKAEAVFAEMRKYGLSPSAIVYNAYIDGLVKGGNNVKAVEIFHRMKRD 254

Query: 539 GIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEA 598
           G  P   TY ++I+          A  +   M      P   T+TAL+  L   G  ++A
Sbjct: 255 GCQPTTDTYTMLINVYGKESKSHMAQNIFDEMRTQRCKPNICTFTALVNALAREGLCEKA 314

Query: 599 LNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
             + + +   G   DV  YN +++     G       I   M     +PD ++ + +   
Sbjct: 315 EEIFEQMQEAGYEPDVYAYNALMESYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDA 374

Query: 659 YVNCGFHNSAMEALQ 673
           Y   G H  A    +
Sbjct: 375 YGRAGLHEDAQAVFE 389



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/287 (19%), Positives = 116/287 (40%), Gaps = 22/287 (7%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGM-EVLKI 353
           +F+ +++A  R      AE++  QMQ  G +P  + Y+  + +  S  G   G  E+  +
Sbjct: 297 TFTALVNALAREGLCEKAEEIFEQMQEAGYEPDVYAYNALMES-YSRAGFPYGAAEIFSL 355

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDK 410
           MQ    +P  ++   +     +A   + A+A+ +++ R       K     L+A  +   
Sbjct: 356 MQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEEMKRIGITPTMKSHMLLLSAYSSAGN 415

Query: 411 PERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
             +   I  +M +  L+PD      + +L+G +    +  ++FS +           D++
Sbjct: 416 VAKCEDIIGQMHKSGLKPDTFVMNSMLNLYGRLGQFGKMEDLFSTMQKG----PCRADIS 471

Query: 470 RNNIQHSHISMKNLLKALGAEGMIR---ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESH 526
             NI         L+   G  G +    EL Q            T+ + + +    +   
Sbjct: 472 TYNI---------LINVYGRAGFVERMEELFQLLPAKNLEPDVVTWTSRIGAYSRKKLYK 522

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRD 573
           R +E+F++M   G  P+  T  +++  CS     +  + +V  M +D
Sbjct: 523 RCLELFEKMIDAGCYPDGGTAKVLLSACSSEEQIEQVTNVVRTMHKD 569


>gi|225451367|ref|XP_002263590.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680 [Vitis vinifera]
 gi|296087085|emb|CBI33459.3| unnamed protein product [Vitis vinifera]
          Length = 592

 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 77/362 (21%), Positives = 151/362 (41%), Gaps = 20/362 (5%)

Query: 319 MQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALE 378
           +++ G   S+  +   + A        + ++  ++++++NL+    +   L     K   
Sbjct: 146 LEARGTHQSNLVFSVLMNAYTDSGYFSDAIQCFRLVRKHNLQIPFHSCGYLFDRLMKLNL 205

Query: 379 LDLAEALLDQISRCTNPKPFSAFLAACDTMDKPER---AIKIFAKM-RQKLRPDIRTYEL 434
              A A  ++I  C  P     F      + K  +   A  +F ++ ++ LRP + ++  
Sbjct: 206 TSPAWAFYEEILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNT 265

Query: 435 LFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIR 494
           L      +N   + GN+    D   R+    M+   N +     +   L+  L  EG + 
Sbjct: 266 L------INGYCKSGNL----DQGFRLKRFMME---NRVFPDVFTYSVLINGLCKEGQLD 312

Query: 495 ELIQYF---CDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI 551
           +  + F   CD        T+ T+++       +   MEI++QM   G+ P+  TYN +I
Sbjct: 313 DANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLI 372

Query: 552 DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIP 611
           +    +   + A  LV  M + G  P   TYT LI      GD + AL +   +  EGI 
Sbjct: 373 NGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIE 432

Query: 612 HDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEA 671
            D + +  ++   C +G++   E  + +M +  ++PD +T   V  G+   G   +  + 
Sbjct: 433 LDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKL 492

Query: 672 LQ 673
           L+
Sbjct: 493 LK 494



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 76/347 (21%), Positives = 145/347 (41%), Gaps = 34/347 (9%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           SF+ +I+   ++ N     +L   M    + P   TY   I  +  +  L +  ++   M
Sbjct: 262 SFNTLINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEM 321

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDK 410
               L P D T  TL          DL   +  Q+ R    KP    ++  +     +  
Sbjct: 322 CDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLR-KGVKPDVITYNTLINGLCKVGD 380

Query: 411 PERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
              A K+  +M Q+ L+PD  TY +L      ++   +EG++ S ++       I  +M 
Sbjct: 381 LREAKKLVIEMTQRGLKPDKFTYTML------IDGCCKEGDLESALE-------IRKEMV 427

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESH 526
           +  I+  +++   L+     EG + E    ++   ++       TY  V+H   +  +  
Sbjct: 428 KEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGFCKKGDVK 487

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
              ++ K+M+  G  P   TYN++++        K+A+ L+  M+  G  P  +TY  L+
Sbjct: 488 TGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLDAMLNLGVVPDDITYNILL 547

Query: 587 KILLDYG---DFDEALNLLDLVSLEGIPHDVLLYNTI---LKKACEK 627
           +    +G   DFD+      L S +G+  D   Y ++   L+K C++
Sbjct: 548 EGHCKHGNREDFDK------LQSEKGLVQDYGSYTSLIGDLRKTCKE 588



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 62/281 (22%), Positives = 110/281 (39%), Gaps = 51/281 (18%)

Query: 421 MRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISM 480
           M  ++ PD+ TY +L      +N   +EG    Q+D A   N + ++M    +  + ++ 
Sbjct: 287 MENRVFPDVFTYSVL------INGLCKEG----QLDDA---NKLFLEMCDRGLVPNDVTF 333

Query: 481 KNLLKA---LGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKT 537
             L+      G   +  E+ Q            TYNT+++ L +  +   A ++  +M  
Sbjct: 334 TTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQ 393

Query: 538 CGIPPNAATYNIMIDCCSIIRCFKSA-------------------SALVSMMVRD----- 573
            G+ P+  TY ++ID C      +SA                   +AL+S   R+     
Sbjct: 394 RGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIE 453

Query: 574 -----------GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILK 622
                      G  P   TYT +I      GD      LL  +  +G    V+ YN +L 
Sbjct: 454 AERTLREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLN 513

Query: 623 KACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
             C++G++     +++ M    V PD  T + +  G+   G
Sbjct: 514 GLCKQGQMKNANMLLDAMLNLGVVPDDITYNILLEGHCKHG 554



 Score = 45.8 bits (107), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 56/268 (20%), Positives = 108/268 (40%), Gaps = 8/268 (2%)

Query: 128 MMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHAN-LCLDLMDS 186
           ++   CK G L++   L  F+ E   ++P +  Y+  +    K   +  AN L L++ D 
Sbjct: 266 LINGYCKSGNLDQGFRLKRFMMENR-VFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDR 324

Query: 187 RMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYSLSIFSLRKFVWSFTRLRDLKS 245
            +V  N+VT+T L+             EI++  + K     + +    +    ++ DL+ 
Sbjct: 325 GLV-PNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLRE 383

Query: 246 AYETLQHMVALAMM-GKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRW---SFSDVIH 301
           A + +  M    +   K       +G  +   L+  + +    V + +     +F+ +I 
Sbjct: 384 AKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALIS 443

Query: 302 ACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKP 361
              R      AE+ + +M   G++P   TY   I        ++ G ++LK MQ +   P
Sbjct: 444 GFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVP 503

Query: 362 QDSTIATLSVECSKALELDLAEALLDQI 389
              T   L     K  ++  A  LLD +
Sbjct: 504 GVVTYNVLLNGLCKQGQMKNANMLLDAM 531



 Score = 39.3 bits (90), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 8/130 (6%)

Query: 109 TWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGAC 168
           T R M E  I  ++  Y +++   CK G ++    L+  + +  G  P +  YN  L   
Sbjct: 457 TLREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEM-QCDGHVPGVVTYNVLLNGL 515

Query: 169 AKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKN------LSAVHEIWEDYIKH 222
            K   M +AN+ LD M +  V  +++TY  LL+      N      L +   + +DY  +
Sbjct: 516 CKQGQMKNANMLLDAMLNLGVVPDDITYNILLEGHCKHGNREDFDKLQSEKGLVQDYGSY 575

Query: 223 YSLSIFSLRK 232
            SL I  LRK
Sbjct: 576 TSL-IGDLRK 584


>gi|326504498|dbj|BAJ91081.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 793

 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 73/326 (22%), Positives = 137/326 (42%), Gaps = 37/326 (11%)

Query: 395 PKP----FSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEG 449
           P+P    ++A ++A     +   A+ +F +M    ++P I TY ++  ++  +  P+++ 
Sbjct: 174 PEPDASAYTALVSAFSRASRFRDAVAVFRRMVANGIQPAIVTYNVVLHVYSKIAVPWKD- 232

Query: 450 NMFSQVDSAKRINAIEMD--------------------------MARNNIQHSHISMKNL 483
            + + VDS K  + I +D                          M     +   ++  +L
Sbjct: 233 -VVALVDSMKN-DGIPLDRYTYNTLISCCRRGALYKEAAKVFDEMRAAGFEPDKVTFNSL 290

Query: 484 LKALGAEGMIRELIQYFCD---SKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGI 540
           L   G   M  E I    +      P    TYN+++ S V+      A E+ ++M+  GI
Sbjct: 291 LDVYGKARMHDEAIGVLKEMELGGCPPSVVTYNSLISSYVKDGLLKEAAELKEEMEVKGI 350

Query: 541 PPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALN 600
            P+  TY  +I          +A      M+R+G  P   TY ALIK+    G F E + 
Sbjct: 351 QPDVITYTTLISGLDRAGKIDAAIGTYDEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMA 410

Query: 601 LLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYV 660
           + D +   G   DV+ +NT+L    + G    +  + ++M ++   P+  T   + S Y 
Sbjct: 411 VFDDLRSAGFVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKSGYVPERDTYVSLISSYS 470

Query: 661 NCGFHNSAMEALQVLSMRMLCEEVST 686
            CG  + +ME  + +    +  ++ST
Sbjct: 471 RCGLFDQSMEIYKRMIEAGIYPDIST 496



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 83/357 (23%), Positives = 155/357 (43%), Gaps = 36/357 (10%)

Query: 319 MQSLGLQPSSHTYDGFIRAIVSDRGLRNGME-VLKIMQQNNLKPQDSTIATLSVECSKAL 377
           ++S G  P   T++  + A+    GL + +  V K M+++   P+  T  +L    S+  
Sbjct: 415 LRSAGFVPDVVTWNTLL-AVFGQNGLDSEVSGVFKEMKKSGYVPERDTYVSLISSYSRCG 473

Query: 378 ELDLAEALLDQISRC---TNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYE 433
             D +  +  ++       +   ++A L+A     + E+A K+FA+M     RPD  +Y 
Sbjct: 474 LFDQSMEIYKRMIEAGIYPDISTYNAVLSALARGGRWEQAEKLFAEMENLDCRPDELSYS 533

Query: 434 LLFSLFGNVNAPYEEGNMFSQVDSAKRINA--------IEMDMARNNIQHSHISM----- 480
            L   + N     ++    S+   A++I +        + ++   NN+  +  +      
Sbjct: 534 SLLHAYANAKK-LDKMKALSEDIYAEKIESHHGLVKTLVLVNSKVNNLSETEKAFLELGR 592

Query: 481 ------KNLLKAL----GAEGMIR---ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHR 527
                  N+L A+    G   M++   E++     S   L T TYN+++H      +  +
Sbjct: 593 RRCSLDINVLNAMVSVYGKNRMVKKVEEILSLMKGSSINLSTATYNSLMHMYSRLGDCEK 652

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
              I  ++K+ G  P+  +YN MI         K AS L S M   G  P  +TY   +K
Sbjct: 653 CENILTEIKSSGARPDRYSYNTMIYAYGRKGQMKEASRLFSEMKSSGLIPDIVTYNIFVK 712

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI-DVIEFI--IEQMH 641
             +    F+EA++L+  +   G   +   YN+IL++ C  G+I D   F+  + Q+H
Sbjct: 713 SYVANSMFEEAIDLVRYMVTRGCKPNERTYNSILQEYCRHGKIADAKSFLSNLPQLH 769



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 76/392 (19%), Positives = 145/392 (36%), Gaps = 34/392 (8%)

Query: 325 QPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTI-ATLSVECSKALELDLAE 383
           +P +  Y   + A       R+ + V + M  N ++P   T    L V    A+      
Sbjct: 175 EPDASAYTALVSAFSRASRFRDAVAVFRRMVANGIQPAIVTYNVVLHVYSKIAVPWKDVV 234

Query: 384 ALLDQISRCTNP---KPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLF 439
           AL+D +     P     ++  ++ C      + A K+F +MR     PD  T+  L  ++
Sbjct: 235 ALVDSMKNDGIPLDRYTYNTLISCCRRGALYKEAAKVFDEMRAAGFEPDKVTFNSLLDVY 294

Query: 440 GNVNAPYEEGNMFSQVDSA----------------------KRINAIEMDMARNNIQHSH 477
           G      E   +  +++                        K    ++ +M    IQ   
Sbjct: 295 GKARMHDEAIGVLKEMELGGCPPSVVTYNSLISSYVKDGLLKEAAELKEEMEVKGIQPDV 354

Query: 478 ISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQ 534
           I+   L+  L   G I   I  + +       P   TYN ++       +    M +F  
Sbjct: 355 ITYTTLISGLDRAGKIDAAIGTYDEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMAVFDD 414

Query: 535 MKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGD 594
           +++ G  P+  T+N ++            S +   M + G+ P+  TY +LI      G 
Sbjct: 415 LRSAGFVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKSGYVPERDTYVSLISSYSRCGL 474

Query: 595 FDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHF 654
           FD+++ +   +   GI  D+  YN +L      GR +  E +  +M     +PD  +   
Sbjct: 475 FDQSMEIYKRMIEAGIYPDISTYNAVLSALARGGRWEQAEKLFAEMENLDCRPDELSYSS 534

Query: 655 VFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           +   Y N       ++ ++ LS  +  E++ +
Sbjct: 535 LLHAYANA----KKLDKMKALSEDIYAEKIES 562



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 90/456 (19%), Positives = 175/456 (38%), Gaps = 76/456 (16%)

Query: 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
           + +F+ ++   G+ +    A  ++ +M+  G  PS  TY+  I + V D  L+   E+ +
Sbjct: 284 KVTFNSLLDVYGKARMHDEAIGVLKEMELGGCPPSVVTYNSLISSYVKDGLLKEAAELKE 343

Query: 353 IMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR-------CTNPKPFSAFLAAC 405
            M+   ++P   T  TL     +A ++D A    D++ R       CT    ++A +   
Sbjct: 344 EMEVKGIQPDVITYTTLISGLDRAGKIDAAIGTYDEMLRNGCKPNLCT----YNALIKLH 399

Query: 406 DTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQ---------- 454
               K    + +F  +R     PD+ T+  L ++FG      E   +F +          
Sbjct: 400 GVRGKFPEMMAVFDDLRSAGFVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKSGYVPER 459

Query: 455 ------VDSAKRINAIE--MDMARNNIQ---HSHISMKN-LLKALGAEGMIRELIQYFCD 502
                 + S  R    +  M++ +  I+   +  IS  N +L AL   G   +  + F +
Sbjct: 460 DTYVSLISSYSRCGLFDQSMEIYKRMIEAGIYPDISTYNAVLSALARGGRWEQAEKLFAE 519

Query: 503 SKTPLGTP---TYNTVLHSLVEAQ-----------------ESHRAM------------- 529
            +     P   +Y+++LH+   A+                 ESH  +             
Sbjct: 520 MENLDCRPDELSYSSLLHAYANAKKLDKMKALSEDIYAEKIESHHGLVKTLVLVNSKVNN 579

Query: 530 -----EIFKQM--KTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTY 582
                + F ++  + C +  N    N M+      R  K    ++S+M        T TY
Sbjct: 580 LSETEKAFLELGRRRCSLDIN--VLNAMVSVYGKNRMVKKVEEILSLMKGSSINLSTATY 637

Query: 583 TALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642
            +L+ +    GD ++  N+L  +   G   D   YNT++     KG++     +  +M  
Sbjct: 638 NSLMHMYSRLGDCEKCENILTEIKSSGARPDRYSYNTMIYAYGRKGQMKEASRLFSEMKS 697

Query: 643 NKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678
           + + PD  T +     YV       A++ ++ +  R
Sbjct: 698 SGLIPDIVTYNIFVKSYVANSMFEEAIDLVRYMVTR 733



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 96/490 (19%), Positives = 184/490 (37%), Gaps = 61/490 (12%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y  ++ +  K G L+EA+ L   + E  GI P +  Y + +    +   +  A    D M
Sbjct: 322 YNSLISSYVKDGLLKEAAELKEEM-EVKGIQPDVITYTTLISGLDRAGKIDAAIGTYDEM 380

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLK 244
                  N  TY  L+KL   +     +  +++D                     LR   
Sbjct: 381 LRNGCKPNLCTYNALIKLHGVRGKFPEMMAVFDD---------------------LRSAG 419

Query: 245 SAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACG 304
              + +     LA+ G+  ++    G  +  +    +P          R ++  +I +  
Sbjct: 420 FVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKSGYVPE---------RDTYVSLISSYS 470

Query: 305 RTQNSGLAEQLM---LQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKP 361
           R    GL +Q M    +M   G+ P   TY+  + A+          ++   M+  + +P
Sbjct: 471 RC---GLFDQSMEIYKRMIEAGIYPDISTYNAVLSALARGGRWEQAEKLFAEMENLDCRP 527

Query: 362 QDSTIATLSVECSKALELDLAEALLDQI------SRCTNPKPFSAFLAACDTMDKPERAI 415
            + + ++L    + A +LD  +AL + I      S     K      +  + + + E+A 
Sbjct: 528 DELSYSSLLHAYANAKKLDKMKALSEDIYAEKIESHHGLVKTLVLVNSKVNNLSETEKAF 587

Query: 416 KIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQH 475
               + R  L  DI     + S++G                  K++  I   M  ++I  
Sbjct: 588 LELGRRRCSL--DINVLNAMVSVYGKNRM-------------VKKVEEILSLMKGSSINL 632

Query: 476 SHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIF 532
           S  +  +L+      G   +      + K+    P   +YNT++++     +   A  +F
Sbjct: 633 STATYNSLMHMYSRLGDCEKCENILTEIKSSGARPDRYSYNTMIYAYGRKGQMKEASRLF 692

Query: 533 KQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDY 592
            +MK+ G+ P+  TYNI +        F+ A  LV  MV  G  P   TY ++++    +
Sbjct: 693 SEMKSSGLIPDIVTYNIFVKSYVANSMFEEAIDLVRYMVTRGCKPNERTYNSILQEYCRH 752

Query: 593 GDFDEALNLL 602
           G   +A + L
Sbjct: 753 GKIADAKSFL 762



 Score = 43.5 bits (101), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 70/307 (22%), Positives = 128/307 (41%), Gaps = 40/307 (13%)

Query: 107 METWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLG 166
           ME ++ M E  I  +   Y  ++ AL +GG  E+A  L   + E     P    Y+S L 
Sbjct: 479 MEIYKRMIEAGIYPDISTYNAVLSALARGGRWEQAEKLFAEM-ENLDCRPDELSYSSLLH 537

Query: 167 ACA---KLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIW-EDYIKH 222
           A A   KL  M    L  D+   ++   + +  T L+ +     NLS   + + E   + 
Sbjct: 538 AYANAKKLDKM--KALSEDIYAEKIESHHGLVKT-LVLVNSKVNNLSETEKAFLELGRRR 594

Query: 223 YSLSIFSLRKFVWSFTRLRDLK------------------SAYETLQHMVALAMMGKLYI 264
            SL I  L   V  + + R +K                  + Y +L HM +     +   
Sbjct: 595 CSLDINVLNAMVSVYGKNRMVKKVEEILSLMKGSSINLSTATYNSLMHMYSRLGDCEKCE 654

Query: 265 NRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGL 324
           N  +E +   +R D              R+S++ +I+A GR      A +L  +M+S GL
Sbjct: 655 NILTEIKSSGARPD--------------RYSYNTMIYAYGRKGQMKEASRLFSEMKSSGL 700

Query: 325 QPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEA 384
            P   TY+ F+++ V++      +++++ M     KP + T  ++  E  +  ++  A++
Sbjct: 701 IPDIVTYNIFVKSYVANSMFEEAIDLVRYMVTRGCKPNERTYNSILQEYCRHGKIADAKS 760

Query: 385 LLDQISR 391
            L  + +
Sbjct: 761 FLSNLPQ 767


>gi|308080398|ref|NP_001183938.1| PPR-814a [Zea mays]
 gi|223929924|gb|ACN24620.1| PPR-814a [Zea mays]
          Length = 814

 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 81/392 (20%), Positives = 154/392 (39%), Gaps = 24/392 (6%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLG--LQPSSHTYDGFIRAIVSDRGLRNGMEVL 351
           +S+S ++ +      SG A+ L+  M   G    P    Y+  I     +  +    ++ 
Sbjct: 183 FSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYNTVIDGFFKEGDVNKACDLF 242

Query: 352 KIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPK--PFSAFLAACDTM 408
           K M Q  + P   T +++     KA  +D AEA L Q +++   P    ++  +    + 
Sbjct: 243 KEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSST 302

Query: 409 DKPERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMD 467
            + + A+++F +MR Q + PD+ T+ +L           E  ++F               
Sbjct: 303 GQWKEAVRVFKEMRRQSILPDVVTFNMLMGSLCKYGKIKEARDVFDT------------- 349

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRELIQYF----CDSKTPLGTPTYNTVLHSLVEAQ 523
           MA         S   +L     +G + ++   F     D   P+   T+N ++ +     
Sbjct: 350 MAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPV-ICTFNVLIKAYANCG 408

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
              +AM IF +M+  G+ PN  TY  +I     I     A    + M+  G  P    Y 
Sbjct: 409 MLDKAMIIFNEMRDHGVKPNVLTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYH 468

Query: 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
            LI+    +G   +A  L+  +   G+  D++L+++I+   C+ GR+   + I +     
Sbjct: 469 CLIQGFCTHGSLLKAKELISEIMNNGMHLDIVLFSSIINNLCKLGRVMDAQNIFDLTVNV 528

Query: 644 KVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
            + P       +  GY   G    A+     +
Sbjct: 529 GLHPTAVVYSMLMDGYCLVGKMEKALRVFDAM 560



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/268 (23%), Positives = 118/268 (44%), Gaps = 20/268 (7%)

Query: 413 RAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471
           +A  +F +M Q+ + PD  TY  +        A          +D A+   A    M   
Sbjct: 237 KACDLFKEMVQRGIPPDFVTYSSVVHALCKARA----------MDKAE---AFLRQMVNK 283

Query: 472 NIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRA 528
            +  ++ +  NL+    + G  +E ++ F + +     P   T+N ++ SL +  +   A
Sbjct: 284 GVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVTFNMLMGSLCKYGKIKEA 343

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
            ++F  M   G  P+  +YNIM++  +   C    + L  +M+ DG  P   T+  LIK 
Sbjct: 344 RDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKA 403

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
             + G  D+A+ + + +   G+  +VL Y T++   C  G++D       QM    V PD
Sbjct: 404 YANCGMLDKAMIIFNEMRDHGVKPNVLTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPD 463

Query: 649 PSTCHFVFSGYVNCGFHNSAMEALQVLS 676
               H +  G+     H S ++A +++S
Sbjct: 464 KYAYHCLIQGFCT---HGSLLKAKELIS 488



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 87/376 (23%), Positives = 155/376 (41%), Gaps = 27/376 (7%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIV---SDRGLRNGMEVLKIMQQNN---------- 358
           A  L+ ++Q  G        +GF+ AI    S    R+G   L +   N           
Sbjct: 48  AHDLLDELQRRGTPVLERDLNGFLAAIARAPSSAACRSG-PALAVALFNRAASRAQGPRV 106

Query: 359 LKPQDSTIATLSVECSKALELDLAEALLDQISRC---TNPKPFSAFLAACDTMDKPERAI 415
           L P   T A L   C++A   +LA A   Q+ R     +    +  L       + + A+
Sbjct: 107 LSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFCEAKRTDEAL 166

Query: 416 KIFAKMRQKLR--PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNI 473
            I      +L   PD+ +Y +L     +     +  ++   +     + + ++ +A N +
Sbjct: 167 DILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDV-VAYNTV 225

Query: 474 QHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFK 533
                   ++ KA     + +E++Q       P    TY++V+H+L +A+   +A    +
Sbjct: 226 IDGFFKEGDVNKACD---LFKEMVQ----RGIPPDFVTYSSVVHALCKARAMDKAEAFLR 278

Query: 534 QMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYG 593
           QM   G+ PN  TYN +I   S    +K A  +   M R    P  +T+  L+  L  YG
Sbjct: 279 QMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVTFNMLMGSLCKYG 338

Query: 594 DFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCH 653
              EA ++ D ++++G   DV  YN +L     KG +  +  + + M  + + P   T +
Sbjct: 339 KIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFN 398

Query: 654 FVFSGYVNCGFHNSAM 669
            +   Y NCG  + AM
Sbjct: 399 VLIKAYANCGMLDKAM 414



 Score = 76.6 bits (187), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 85/407 (20%), Positives = 160/407 (39%), Gaps = 57/407 (14%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           ++S V+HA  + +    AE  + QM + G+ P++ TY+  I    S    +  + V K M
Sbjct: 256 TYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEM 315

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQIS-RCTNPKPFSAFL----------- 402
           ++ ++ P   T   L     K  ++  A  + D ++ +  NP  FS  +           
Sbjct: 316 RRQSILPDVVTFNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCL 375

Query: 403 -----------------------------AACDTMDKPERAIKIFAKMR-QKLRPDIRTY 432
                                        A C  +DK   A+ IF +MR   ++P++ TY
Sbjct: 376 VDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDK---AMIIFNEMRDHGVKPNVLTY 432

Query: 433 ELLFSLFGNVNAPYEEGNMFSQ-VDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEG 491
             + +    +    +    F+Q +D     +      A + +     +  +LLKA     
Sbjct: 433 TTVIAALCRIGKMDDAMEKFNQMIDQGVAPD----KYAYHCLIQGFCTHGSLLKA----- 483

Query: 492 MIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI 551
             +ELI    ++   L    +++++++L +      A  IF      G+ P A  Y++++
Sbjct: 484 --KELISEIMNNGMHLDIVLFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLM 541

Query: 552 DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIP 611
           D   ++   + A  +   MV  G  P  + Y  L+      G  DE L+L   +  +GI 
Sbjct: 542 DGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIK 601

Query: 612 HDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
              +LYN I+    E GR    +    +M ++ +  +  T   V  G
Sbjct: 602 PSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRG 648



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 113/547 (20%), Positives = 213/547 (38%), Gaps = 48/547 (8%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y  ++    K G + +A +L   + +R GI P    Y+S + A  K  +M  A   L  M
Sbjct: 222 YNTVIDGFFKEGDVNKACDLFKEMVQR-GIPPDFVTYSSVVHALCKARAMDKAEAFLRQM 280

Query: 185 DSRMVGKNEVTYTELL----KLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRL 240
            ++ V  N  TY  L+        W++ +    E+    I    ++   L   +  + ++
Sbjct: 281 VNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVTFNMLMGSLCKYGKI 340

Query: 241 RDLKSAYETLQHMVALAMMGK---------LYINRTSEGRL--RSSRLDIPIPLNALPVM 289
           ++ +  ++T+      AM G+         +     ++G L   +   D+ +     PV+
Sbjct: 341 KEARDVFDTM------AMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPVI 394

Query: 290 KVLRWSFSDVIHACGRTQNSGLAEQLML---QMQSLGLQPSSHTYDGFIRAIVSDRGLRN 346
                +F+ +I A     N G+ ++ M+   +M+  G++P+  TY   I A+     + +
Sbjct: 395 ----CTFNVLIKA---YANCGMLDKAMIIFNEMRDHGVKPNVLTYTTVIAALCRIGKMDD 447

Query: 347 GMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACD 406
            ME    M    + P       L         L  A+ L+ +I           F +  +
Sbjct: 448 AMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVLFSSIIN 507

Query: 407 TMDKPER---AIKIF-AKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRIN 462
            + K  R   A  IF   +   L P    Y +L   +  V    +   +F  + SA    
Sbjct: 508 NLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSA---- 563

Query: 463 AIEM-DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVE 521
            IE  D+    + + +  +  + + L    + RE++Q      T L    YN ++  L E
Sbjct: 564 GIEPNDVVYGTLVNGYCKIGRIDEGLS---LFREMLQKGIKPSTIL----YNIIIDGLFE 616

Query: 522 AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMT 581
           A  +  A   F +M   GI  N  TY+I++      RCF  A  L   +         +T
Sbjct: 617 AGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIIT 676

Query: 582 YTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMH 641
              +I  +      +EA +L   +S  G+   V+ Y+ ++    ++G ++  E +   M 
Sbjct: 677 LNTMIAGMFQTRRVEEAKDLFASISRSGLVPCVVTYSIMITNLIKEGLVEEAEDMFSSMQ 736

Query: 642 QNKVQPD 648
               +PD
Sbjct: 737 NAGCEPD 743



 Score = 56.2 bits (134), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 81/180 (45%), Gaps = 7/180 (3%)

Query: 513 NTVLHSLVEAQESHRAMEIF-KQMKTCGIPPNAATYNIMIDCCSIIRCFKSASA--LVSM 569
           N +L    EA+ +  A++I   +    G  P+  +Y+I++   S+    KS  A  L+ M
Sbjct: 150 NHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLK--SLCDQGKSGQADDLLRM 207

Query: 570 MVRDGFY--PQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEK 627
           M   G    P  + Y  +I      GD ++A +L   +   GIP D + Y++++   C+ 
Sbjct: 208 MAEGGAVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKA 267

Query: 628 GRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTL 687
             +D  E  + QM    V P+  T + +  GY + G    A+   + +  + +  +V T 
Sbjct: 268 RAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVTF 327



 Score = 48.1 bits (113), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 67/319 (21%), Positives = 118/319 (36%), Gaps = 35/319 (10%)

Query: 382 AEALLDQISRCTNP---KPFSAFLAA-------CDTMDKPERAIKIF------AKMRQKL 425
           A  LLD++ R   P   +  + FLAA             P  A+ +F      A+  + L
Sbjct: 48  AHDLLDELQRRGTPVLERDLNGFLAAIARAPSSAACRSGPALAVALFNRAASRAQGPRVL 107

Query: 426 RPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLK 485
            P   TY +L       + P      F Q             + R  ++   I   +LLK
Sbjct: 108 SPTSHTYAILMDCCTRAHRPELALAFFGQ-------------LLRTGLRVDIIIANHLLK 154

Query: 486 ALGAEGMIRELIQYFCDSKTPLG-TP---TYNTVLHSLVEAQESHRAMEIFKQMKTCG-- 539
                    E +         LG  P   +Y+ +L SL +  +S +A ++ + M   G  
Sbjct: 155 GFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAV 214

Query: 540 IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEAL 599
             P+   YN +ID          A  L   MV+ G  P  +TY++++  L      D+A 
Sbjct: 215 CSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAE 274

Query: 600 NLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
             L  +  +G+  +   YN ++      G+      + ++M +  + PD  T + +    
Sbjct: 275 AFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVTFNMLMGSL 334

Query: 660 VNCGFHNSAMEALQVLSMR 678
              G    A +    ++M+
Sbjct: 335 CKYGKIKEARDVFDTMAMK 353


>gi|116309903|emb|CAH66938.1| OSIGBa0116M22.5 [Oryza sativa Indica Group]
          Length = 568

 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 113/234 (48%), Gaps = 16/234 (6%)

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL 487
           D+ TY +L      +N   +EGN+       K+   I  +M+R  ++ + ++  +L+ AL
Sbjct: 326 DVFTYNIL------INGHCKEGNV-------KKALEIFENMSRRGVRATVVTYTSLIYAL 372

Query: 488 GAEGMIRELIQYFCDSKTPLGTPT---YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNA 544
             +G ++E  + F ++      P    YN +++S   +    RA EI  +M+   I P+ 
Sbjct: 373 SKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDD 432

Query: 545 ATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDL 604
            TYN ++    ++     A  L+  M + G  P  +TY  LI      GD  +AL + + 
Sbjct: 433 VTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNE 492

Query: 605 VSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
           +  +G    +L YN +++  C+ G+ D  E ++++M +N + PD ST   +  G
Sbjct: 493 MMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEG 546



 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 77/353 (21%), Positives = 149/353 (42%), Gaps = 12/353 (3%)

Query: 309 SGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIAT 368
           S  A  L   M  L L   + T++  +R + S       +E+L+ M + N    ++ IA 
Sbjct: 135 SAPAFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALELLRQMPRPNAVTYNTVIAG 194

Query: 369 LSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKM--RQKLR 426
                     LD+   + ++     N   +   ++    + + + A+K+F +M  + +++
Sbjct: 195 FCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVK 254

Query: 427 PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKA 486
           P+   Y  L   +       ++G + + +    R+  +E  +A     ++ +     +  
Sbjct: 255 PEAVMYNALIGGY------CDQGKLDTALLYRDRM--VERGVAMTVATYNLLVHALFMDG 306

Query: 487 LGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAAT 546
            G E    EL++        L   TYN +++   +     +A+EIF+ M   G+     T
Sbjct: 307 RGTEAY--ELVEEMGGKGLALDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVT 364

Query: 547 YNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVS 606
           Y  +I   S     +    L    VR G  P  + Y ALI      G+ D A  ++  + 
Sbjct: 365 YTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEME 424

Query: 607 LEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
            + I  D + YNT+++  C  GR+D    +I++M +  +QPD  T + + SGY
Sbjct: 425 KKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGY 477



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 78/366 (21%), Positives = 153/366 (41%), Gaps = 26/366 (7%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQ-NNLKPQDSTIATLS 370
           A +L+ QM     +P++ TY+  I    S   ++  +++++ M++   + P   T  T+ 
Sbjct: 173 ALELLRQMP----RPNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVI 228

Query: 371 VECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDKPERAIKIFAKMRQK-L 425
               K   +D A  + D++      KP    ++A +       K + A+    +M ++ +
Sbjct: 229 SGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGV 288

Query: 426 RPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINA--IEMDMARNNIQ-HSHISMKN 482
              + TY LL      V+A + +G      +  + +    + +D+   NI  + H    N
Sbjct: 289 AMTVATYNLL------VHALFMDGRGTEAYELVEEMGGKGLALDVFTYNILINGHCKEGN 342

Query: 483 LLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPP 542
           + KAL       E+ +            TY +++++L +  +     ++F +    GI P
Sbjct: 343 VKKAL-------EIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRP 395

Query: 543 NAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL 602
           +   YN +I+  S       A  ++  M +    P  +TY  L++ L   G  DEA  L+
Sbjct: 396 DLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLI 455

Query: 603 DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNC 662
           D ++  GI  D++ YNT++     KG +     I  +M      P   T + +  G    
Sbjct: 456 DEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKN 515

Query: 663 GFHNSA 668
           G  + A
Sbjct: 516 GQGDDA 521



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 95/213 (44%), Gaps = 13/213 (6%)

Query: 412 ERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA- 469
           ++A++IF  M R+ +R  + TY  L           E   +F   D A R   I  D+  
Sbjct: 344 KKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLF---DEAVR-RGIRPDLVL 399

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAM 529
            N + +SH +  N+ +A        E++      +      TYNT++  L        A 
Sbjct: 400 YNALINSHSTSGNIDRAF-------EIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEAR 452

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
           ++  +M   GI P+  TYN +I   S+    K A  + + M+  GF P  +TY ALI+ L
Sbjct: 453 KLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGL 512

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILK 622
              G  D+A N++  +   GI  D   Y ++++
Sbjct: 513 CKNGQGDDAENMVKEMVENGITPDDSTYISLIE 545



 Score = 55.1 bits (131), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 76/166 (45%), Gaps = 8/166 (4%)

Query: 507 LGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI-DCCSIIRCFKSASA 565
           L  P     LH L+ A  S  A  +F  M    +P    T+NIM+   CS     K A A
Sbjct: 117 LSLPISTASLHPLLSALPSAPAFALFADMFRLRLPLCTTTFNIMLRHLCS---AGKPARA 173

Query: 566 LVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL-DLVSLEGIPHDVLLYNTILKKA 624
           L   ++R    P  +TY  +I      G    AL+++ ++    GI  +   Y T++   
Sbjct: 174 L--ELLRQMPRPNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGW 231

Query: 625 CEKGRID-VIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAM 669
           C+ GR+D  ++   E + + +V+P+    + +  GY + G  ++A+
Sbjct: 232 CKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTAL 277



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 55/265 (20%), Positives = 116/265 (43%), Gaps = 20/265 (7%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ ++HA         A +L+ +M   GL     TY+  I     +  ++  +E+ + M
Sbjct: 294 TYNLLVHALFMDGRGTEAYELVEEMGGKGLALDVFTYNILINGHCKEGNVKKALEIFENM 353

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPK--PFSAFLAACDTMDKP 411
            +  ++    T  +L    SK  ++   + L D+ + R   P    ++A + +  T    
Sbjct: 354 SRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNI 413

Query: 412 ERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           +RA +I  +M +K + PD  TY  L               +  +VD A+++  I+ +M +
Sbjct: 414 DRAFEIMGEMEKKRIAPDDVTYNTLMRGL----------CLLGRVDEARKL--ID-EMTK 460

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHR 527
             IQ   ++   L+     +G +++ ++   +       P   TYN ++  L +  +   
Sbjct: 461 RGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDD 520

Query: 528 AMEIFKQMKTCGIPPNAATYNIMID 552
           A  + K+M   GI P+ +TY  +I+
Sbjct: 521 AENMVKEMVENGITPDDSTYISLIE 545


>gi|79317869|ref|NP_001031033.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75178969|sp|Q9LPX2.1|PPR39_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12775, mitochondrial; Flags: Precursor
 gi|8698724|gb|AAF78482.1|AC012187_2 Contains similarity to an unknown protein F16M19.7 gi|6598837 from
           Arabidopsis thaliana BAC F16M19 gb|AC010795 and contains
           multiple PPR PF|01535 repeats. EST gb|AI999079 comes
           from this gene [Arabidopsis thaliana]
 gi|332190806|gb|AEE28927.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 644

 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 78/381 (20%), Positives = 165/381 (43%), Gaps = 14/381 (3%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           ++ S +I+   R +    A   M ++  LG +P +  ++  +  +  +  +   +E++  
Sbjct: 124 YTLSIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDR 183

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT---NPKPFSAFLAACDTMDK 410
           M +   KP   T+ TL        ++  A  L+D++       N   +   L       +
Sbjct: 184 MVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQ 243

Query: 411 PERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
              A+++  KM ++ ++ D   Y ++        +     N+F++++    I   + D+ 
Sbjct: 244 TALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEME----IKGFKADII 299

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAM 529
             N         N  +      ++R++I+     K      T++ ++ S V+  +   A 
Sbjct: 300 TYNTLIGGFC--NAGRWDDGAKLLRDMIK----RKISPNVVTFSVLIDSFVKEGKLREAD 353

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
           ++ K+M   GI PN  TYN +ID        + A  +V +M+  G  P  MT+  LI   
Sbjct: 354 QLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGY 413

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649
                 D+ L L   +SL G+  + + YNT+++  C+ G+++V + + ++M   +V+PD 
Sbjct: 414 CKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDI 473

Query: 650 STCHFVFSGYVNCGFHNSAME 670
            +   +  G  + G    A+E
Sbjct: 474 VSYKILLDGLCDNGELEKALE 494



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 105/553 (18%), Positives = 212/553 (38%), Gaps = 90/553 (16%)

Query: 196 YTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255
           ++ + K   ++  L+   ++    I H   SI++L   +  F R R L  A+ T+  ++ 
Sbjct: 95  FSAIAKTKQYELVLALCKQMESKGIAH---SIYTLSIMINCFCRCRKLSYAFSTMGKIMK 151

Query: 256 LAMMGKLYI-NRTSEGRLRSSRL-------DIPIPLNALPVMKVLRWSFSDVIHACGRTQ 307
           L       I N    G     R+       D  + +   P +  L    +      G   
Sbjct: 152 LGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVN------GLCL 205

Query: 308 NSGLAEQLML--QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDST 365
           N  +++ ++L  +M   G QP+  TY   +  +         ME+L+ M++ N+K     
Sbjct: 206 NGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVK 265

Query: 366 IATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTM-------DKPERAIKIF 418
            + +     K   LD A  L +++      K F A +   +T+        + +   K+ 
Sbjct: 266 YSIIIDGLCKDGSLDNAFNLFNEME----IKGFKADIITYNTLIGGFCNAGRWDDGAKLL 321

Query: 419 AKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSH 477
             M ++K+ P++ T+ +L   F       +EG +       +  + +  +M +  I  + 
Sbjct: 322 RDMIKRKISPNVVTFSVLIDSF------VKEGKL-------READQLLKEMMQRGIAPNT 368

Query: 478 ISMKNLLKALGAEGMIRELIQYF-------CDSKTPLGTPTYNTVLHSLVEAQESHRAME 530
           I+  +L+     E  + E IQ         CD        T+N +++   +A      +E
Sbjct: 369 ITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIM----TFNILINGYCKANRIDDGLE 424

Query: 531 IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590
           +F++M   G+  N  TYN ++         + A  L   MV     P  ++Y  L+  L 
Sbjct: 425 LFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLC 484

Query: 591 DYGDFDEALNL----------LDL-------------------------VSLEGIPHDVL 615
           D G+ ++AL +          LD+                         + L+G+  D  
Sbjct: 485 DNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDAR 544

Query: 616 LYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
            YN ++ + C K  +   + +  +M +    PD  T + +   ++      +A E ++ +
Sbjct: 545 AYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRAHLGDDDATTAAELIEEM 604

Query: 676 SMRMLCEEVSTLE 688
                  +VST++
Sbjct: 605 KSSGFPADVSTVK 617



 Score = 65.1 bits (157), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 119/592 (20%), Positives = 210/592 (35%), Gaps = 74/592 (12%)

Query: 37  SRTLTTTMGLNE--ESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHIL 94
           SR L T +  N    +I+K  Q ++V ALC+   S+       + H+ ++L       ++
Sbjct: 82  SRPLPTVIDFNRLFSAIAKTKQYELVLALCKQMESKG------IAHSIYTLSI-----MI 130

Query: 95  NYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGI 154
           N   R     +   T   + +     +   +  ++  LC    + EA  L+  + E  G 
Sbjct: 131 NCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVE-MGH 189

Query: 155 YPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHE 214
            P L   N+ +        +  A + +D M       NEVTY  +L +       +   E
Sbjct: 190 KPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAME 249

Query: 215 IWEDYI-KHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYI-NRTSEGRL 272
           +      ++  L        +    +   L +A+     M        +   N    G  
Sbjct: 250 LLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFC 309

Query: 273 RSSRLDIPIPLNALPVMKVLR---WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSH 329
            + R D    L    + + +     +FS +I +  +      A+QL+ +M   G+ P++ 
Sbjct: 310 NAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTI 369

Query: 330 TYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI 389
           TY+  I     +  L   ++++ +M      P   T   L     KA  +D    L  ++
Sbjct: 370 TYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREM 429

Query: 390 S---RCTNPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAP 445
           S      N   ++  +       K E A K+F +M  +++RPDI                
Sbjct: 430 SLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDI---------------- 473

Query: 446 YEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCD--- 502
                                           +S K LL  L   G + + ++ F     
Sbjct: 474 --------------------------------VSYKILLDGLCDNGELEKALEIFGKIEK 501

Query: 503 SKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKS 562
           SK  L    Y  ++H +  A +   A ++F  +   G+  +A  YNIMI           
Sbjct: 502 SKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSK 561

Query: 563 ASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDV 614
           A  L   M  +G  P  +TY  LI+  L   D   A  L++ +   G P DV
Sbjct: 562 ADILFRKMTEEGHAPDELTYNILIRAHLGDDDATTAAELIEEMKSSGFPADV 613



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 95/198 (47%), Gaps = 10/198 (5%)

Query: 484 LKALGAEGMIRELIQYFCDSKTPLGTPT-YNTVLHSLVEAQESHRAMEIFKQMKTCGIPP 542
           +KA  A  + R++IQ       PL T   +N +  ++ + ++    + + KQM++ GI  
Sbjct: 67  IKADDAVDLFRDMIQ-----SRPLPTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAH 121

Query: 543 NAATYNIMIDCCSIIRCFKSASALVSM--MVRDGFYPQTMTYTALIKILLDYGDFDEALN 600
           +  T +IMI+C    RC K + A  +M  +++ G+ P T+ +  L+  L       EAL 
Sbjct: 122 SIYTLSIMINC--FCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALE 179

Query: 601 LLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYV 660
           L+D +   G    ++  NT++   C  G++     +I++M +   QP+  T   V +   
Sbjct: 180 LVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMC 239

Query: 661 NCGFHNSAMEALQVLSMR 678
             G    AME L+ +  R
Sbjct: 240 KSGQTALAMELLRKMEER 257


>gi|356510082|ref|XP_003523769.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 602

 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 86/398 (21%), Positives = 163/398 (40%), Gaps = 21/398 (5%)

Query: 296 FSDVIHACGRTQNSGLAEQLML--QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           F+  IH     +N  L E L    +M   G  P        IR        +    +++I
Sbjct: 107 FASNIHLRKLVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTKKATRIMEI 166

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAA-CDTMDKPE 412
           ++ +   P   T   L     K+ E+D A  +L+++S   +   ++  L + CD+  K +
Sbjct: 167 LENSGAVPDVITYNVLIGGYCKSGEIDKALEVLERMSVAPDVVTYNTILRSLCDS-GKLK 225

Query: 413 RAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471
            A+++  +  Q+   PD+ TY +L     N +     G     +D          +M + 
Sbjct: 226 EAMEVLDRQLQRECYPDVITYTILIEATCNDSGV---GQAMKLLD----------EMRKK 272

Query: 472 NIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRA 528
             +   ++   L+  +  EG + E I++  +  +    P   T+N +L S+        A
Sbjct: 273 GCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCKPNVITHNIILRSMCSTGRWMDA 332

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
             +   M   G  P+  T+NI+I+     R    A  ++  M + G  P +++Y  L+  
Sbjct: 333 ERLLSDMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHG 392

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
                  D A+  L+++   G   D++ YNT+L   C+ G++D    I+ Q+      P 
Sbjct: 393 FCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDAAVEILNQLSSKGCSPV 452

Query: 649 PSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
             T + V  G    G    A+E L+ +  + L  ++ T
Sbjct: 453 LITYNTVIDGLTKVGKTEYAVELLEEMRRKGLKPDIIT 490



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 100/439 (22%), Positives = 180/439 (41%), Gaps = 33/439 (7%)

Query: 128 MMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSR 187
           +++  C+ G  ++A+ ++  L E  G  P +  YN  +G   K   +  A   L++++  
Sbjct: 147 LIRGFCRSGKTKKATRIMEIL-ENSGAVPDVITYNVLIGGYCKSGEIDKA---LEVLERM 202

Query: 188 MVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSL-SIFSLRKFVWSFTRLRDLKSA 246
            V  + VTY  +L+       L    E+ +  ++      + +    + +      +  A
Sbjct: 203 SVAPDVVTYNTILRSLCDSGKLKEAMEVLDRQLQRECYPDVITYTILIEATCNDSGVGQA 262

Query: 247 YETLQHMVALAMMGKLYI-NRTSEGRLRSSRLDIPIP-LNALPVM--KVLRWSFSDVIHA 302
            + L  M        +   N    G  +  RLD  I  LN +P    K    + + ++ +
Sbjct: 263 MKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCKPNVITHNIILRS 322

Query: 303 CGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQ 362
              T     AE+L+  M   G  PS  T++  I  +   R L   ++VL+ M ++   P 
Sbjct: 323 MCSTGRWMDAERLLSDMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCVPN 382

Query: 363 DSTIATLSVECSKALELDLA-EALLDQISRCTNPK--PFSAFLAACDTMDKPERAIKIFA 419
             +   L     +  ++D A E L   +SR   P    ++  L A     K + A++I  
Sbjct: 383 SLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDAAVEILN 442

Query: 420 KMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM--DMARNNIQHS 476
           ++  K   P + TY  +      V                K   A+E+  +M R  ++  
Sbjct: 443 QLSSKGCSPVLITYNTVIDGLTKV---------------GKTEYAVELLEEMRRKGLKPD 487

Query: 477 HISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFK 533
            I+   LL+ LG EG + E I+ F D +     P   TYN ++  L +AQ++ RA++   
Sbjct: 488 IITYSTLLRGLGREGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLA 547

Query: 534 QMKTCGIPPNAATYNIMID 552
            M   G  P  ATY I+I+
Sbjct: 548 YMVEKGCKPTEATYTILIE 566



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 76/326 (23%), Positives = 134/326 (41%), Gaps = 26/326 (7%)

Query: 326 PSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEAL 385
           P   TY   I A  +D G+   M++L  M++   KP   T   L     K   LD A   
Sbjct: 241 PDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKF 300

Query: 386 LDQI-SRCTNPKPFS---AFLAACDT---MDKPERAIKIFAKM-RQKLRPDIRTYELLFS 437
           L+ + S    P   +      + C T   MD    A ++ + M R+   P + T+ +L +
Sbjct: 301 LNNMPSYGCKPNVITHNIILRSMCSTGRWMD----AERLLSDMLRKGCSPSVVTFNILIN 356

Query: 438 LFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELI 497
                      G     ++   +   +   ++ N + H     K + +A+       E +
Sbjct: 357 FLCRKRLL---GRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAI-------EYL 406

Query: 498 QYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSII 557
           +            TYNT+L +L +  +   A+EI  Q+ + G  P   TYN +ID  + +
Sbjct: 407 EIMVSRGCYPDIVTYNTLLTALCKDGKVDAAVEILNQLSSKGCSPVLITYNTVIDGLTKV 466

Query: 558 RCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLY 617
              + A  L+  M R G  P  +TY+ L++ L   G  DEA+ +   +    I    + Y
Sbjct: 467 GKTEYAVELLEEMRRKGLKPDIITYSTLLRGLGREGKVDEAIKIFHDMEGLSIKPSAVTY 526

Query: 618 NTILKKACEKGR----IDVIEFIIEQ 639
           N I+   C+  +    ID + +++E+
Sbjct: 527 NAIMLGLCKAQQTSRAIDFLAYMVEK 552



 Score = 45.4 bits (106), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 57/263 (21%), Positives = 110/263 (41%), Gaps = 18/263 (6%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGE--RYGIYPILPVYNSFLGACAKLHSMVHANLCLD 182
           Y +++  +CK G L+EA   I FL     YG  P +  +N  L +       + A   L 
Sbjct: 281 YNVLINGICKEGRLDEA---IKFLNNMPSYGCKPNVITHNIILRSMCSTGRWMDAERLLS 337

Query: 183 LMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSL-SIFSLRKFVWSFTRLR 241
            M  +    + VT+  L+     ++ L    ++ E   KH  + +  S    +  F + +
Sbjct: 338 DMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEK 397

Query: 242 DLKSAYETLQHMVALAMMGKLYINRTSEGRL-RSSRLDIPIP-LNAL------PVMKVLR 293
            +  A E L+ MV+      +    T    L +  ++D  +  LN L      PV+    
Sbjct: 398 KMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDAAVEILNQLSSKGCSPVL---- 453

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
            +++ VI    +   +  A +L+ +M+  GL+P   TY   +R +  +  +   +++   
Sbjct: 454 ITYNTVIDGLTKVGKTEYAVELLEEMRRKGLKPDIITYSTLLRGLGREGKVDEAIKIFHD 513

Query: 354 MQQNNLKPQDSTIATLSVECSKA 376
           M+  ++KP   T   + +   KA
Sbjct: 514 MEGLSIKPSAVTYNAIMLGLCKA 536


>gi|242095042|ref|XP_002438011.1| hypothetical protein SORBIDRAFT_10g006490 [Sorghum bicolor]
 gi|241916234|gb|EER89378.1| hypothetical protein SORBIDRAFT_10g006490 [Sorghum bicolor]
          Length = 1443

 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 76/361 (21%), Positives = 145/361 (40%), Gaps = 28/361 (7%)

Query: 299 VIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNN 358
           V+   GR +   +AE++ L+    G   +   ++  +          +  ++L  M    
Sbjct: 194 VLGVLGRARQDSIAEEVFLRFAGEG--ATVQVFNAMMGVYARSGRFDDARQLLDTMHDRG 251

Query: 359 LKPQDSTIATLSVECSKA--LELDLAEALLDQISRCTNPKP----FSAFLAACDTMDKPE 412
           + P   +  TL    SK+  L   +A  LL ++ R +  +P    ++  ++AC      E
Sbjct: 252 IDPDLVSFNTLINARSKSGCLAAGVALDLLFEV-RQSGLRPDVITYNTLISACSQSSNLE 310

Query: 413 RAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471
            A+ +F +M   + RPD+ TY  + S+ G      E   +F +             +   
Sbjct: 311 DAVTVFEEMIASECRPDLWTYNAMVSVHGRCGKAEEAERLFGE-------------LVEK 357

Query: 472 NIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP----TYNTVLHSLVEAQESHR 527
                 ++  +LL A   EG + + +++ C+     G      TYNT++H   +      
Sbjct: 358 GFMPDAVTYNSLLYAFAKEGNV-DKVEHTCEELVKAGFKKNEITYNTMIHMYGKMGRLDL 416

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A+ ++ +M+  G  P+A TY +MID    +     A  ++  M   G  P  + ++ALI 
Sbjct: 417 AVGLYDEMRAVGCTPDAVTYTVMIDSLGKMDKIAEAGKVLEDMADAGLKPTLVAFSALIC 476

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
                G   +A    D +   G+  D L Y  +L      G  + +  +   M  +  +P
Sbjct: 477 AYAKGGRRADAEKTFDCMIASGVKPDRLAYLVMLDVFARSGETEKMLRLYRTMMNDNYRP 536

Query: 648 D 648
           D
Sbjct: 537 D 537



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 68/143 (47%), Gaps = 4/143 (2%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASA--LVS 568
           TYNT++ +  ++     A+ +F++M      P+  TYN M+      RC K+  A  L  
Sbjct: 295 TYNTLISACSQSSNLEDAVTVFEEMIASECRPDLWTYNAMVSVHG--RCGKAEEAERLFG 352

Query: 569 MMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
            +V  GF P  +TY +L+      G+ D+  +  + +   G   + + YNT++    + G
Sbjct: 353 ELVEKGFMPDAVTYNSLLYAFAKEGNVDKVEHTCEELVKAGFKKNEITYNTMIHMYGKMG 412

Query: 629 RIDVIEFIIEQMHQNKVQPDPST 651
           R+D+   + ++M      PD  T
Sbjct: 413 RLDLAVGLYDEMRAVGCTPDAVT 435



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 52/261 (19%), Positives = 114/261 (43%), Gaps = 20/261 (7%)

Query: 313  EQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVE 372
            E ++ +M+  G +P    ++  +    +        +V + + +  L+P + T  TL V 
Sbjct: 905  ELMIAEMEGAGFKPDLSIFNSLLNMYTAAGNFDRTTQVYQSILEAGLEPDEDTYNTLIVM 964

Query: 373  CSKALELDLAEALLDQIS-RCTNPK--PFSAFLAACDTMDKPERAIKIFAKMRQKLRPDI 429
              ++L  +    LL+++  R   PK   + + LAA    +  E+A ++F +MR K     
Sbjct: 965  YCRSLRPEEGFTLLNEMGKRGLTPKLQSYKSLLAASAKAELREQADQLFEEMRSK----- 1019

Query: 430  RTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGA 489
             +Y+L  S++  +   Y      S+ ++   +      M  + I+ +  +M  L+ + G 
Sbjct: 1020 -SYQLNRSIYHMMMKIYRNAGNHSKAENLLAV------MKEDGIEPTIATMHILMTSYGT 1072

Query: 490  EGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAAT 546
             G   E   ++     S   + T  Y+TV  + ++  +    ++   +MK  G+ P+   
Sbjct: 1073 AGQPHEAENVLNSLKSSSLEVSTLPYSTVFDAYLKNGDYDLGIKKLLEMKRDGVEPDHQV 1132

Query: 547  YNIMIDCCSIIRCFKSASALV 567
            +   I   S+  C ++A A++
Sbjct: 1133 WTCFIRAASL--CEQTADAIL 1151



 Score = 49.7 bits (117), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 37/172 (21%), Positives = 71/172 (41%), Gaps = 3/172 (1%)

Query: 479 SMKNLLKALGAEGMIREL---IQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQM 535
           S+  +++AL  +G + EL   +    D    +   T   +L +  +A +    M+I+  M
Sbjct: 817 SVNGMMRALIVDGRLDELYVVVGELQDMDFKISKSTVLLMLDAFAKAGDVFEVMKIYNGM 876

Query: 536 KTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDF 595
           K  G  PN   Y  M         F+    +++ M   GF P    + +L+ +    G+F
Sbjct: 877 KAAGYLPNMHLYRSMTSLLCHHNRFRDVELMIAEMEGAGFKPDLSIFNSLLNMYTAAGNF 936

Query: 596 DEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
           D    +   +   G+  D   YNT++   C   R +    ++ +M +  + P
Sbjct: 937 DRTTQVYQSILEAGLEPDEDTYNTLIVMYCRSLRPEEGFTLLNEMGKRGLTP 988



 Score = 47.4 bits (111), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 96/456 (21%), Positives = 174/456 (38%), Gaps = 84/456 (18%)

Query: 293  RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
            R  ++ +IHA   +     A  +   M   G  P+  + +G +RA++ D  L     V+ 
Sbjct: 780  RRIWNALIHAYAESGLYEKARAVFDNMIKTGPLPTVDSVNGMMRALIVDGRLDELYVVVG 839

Query: 353  IMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPE 412
             +Q  + K   ST+  +                              AF  A D  +   
Sbjct: 840  ELQDMDFKISKSTVLLM----------------------------LDAFAKAGDVFE--- 868

Query: 413  RAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSA------KRINAI- 464
              +KI+  M+     P++  Y  + SL  + N   +   M ++++ A         N++ 
Sbjct: 869  -VMKIYNGMKAAGYLPNMHLYRSMTSLLCHHNRFRDVELMIAEMEGAGFKPDLSIFNSLL 927

Query: 465  EMDMARNNIQHSHISMKNLLKA--LGAEGMIRELIQYFCDSKTP---------LG----T 509
             M  A  N   +    +++L+A     E     LI  +C S  P         +G    T
Sbjct: 928  NMYTAAGNFDRTTQVYQSILEAGLEPDEDTYNTLIVMYCRSLRPEEGFTLLNEMGKRGLT 987

Query: 510  P---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASAL 566
            P   +Y ++L +  +A+   +A ++F++M++     N + Y++M+           A  L
Sbjct: 988  PKLQSYKSLLAASAKAELREQADQLFEEMRSKSYQLNRSIYHMMMKIYRNAGNHSKAENL 1047

Query: 567  VSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE 626
            +++M  DG  P   T   L+      G   EA N+L+ +    +    L Y+T+     +
Sbjct: 1048 LAVMKEDGIEPTIATMHILMTSYGTAGQPHEAENVLNSLKSSSLEVSTLPYSTVFDAYLK 1107

Query: 627  KGRIDVIEFIIEQMHQNKVQPD----------PSTCH------FVFSGYVNCGFHNSAME 670
             G  D+    + +M ++ V+PD           S C        +     +CGF      
Sbjct: 1108 NGDYDLGIKKLLEMKRDGVEPDHQVWTCFIRAASLCEQTADAILLLKSLQDCGFD----- 1162

Query: 671  ALQVLSMRMLCEEV-STLEEKRSDFEDLILAEDSEA 705
                L +R+L E   S L E  +  E+L   EDS A
Sbjct: 1163 ----LPIRLLTERTPSLLSEIANYLEELEALEDSAA 1194



 Score = 46.2 bits (108), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 79/185 (42%), Gaps = 7/185 (3%)

Query: 483 LLKALGAEGMIREL--IQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGI 540
           +++A+G     R L   ++   S  P  +     VL  L  A++   A E+F  ++  G 
Sbjct: 161 VVRAVGESSWRRALDAFEWLARSTAP-ASRAVAVVLGVLGRARQDSIAEEVF--LRFAGE 217

Query: 541 PPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDE--A 598
                 +N M+   +    F  A  L+  M   G  P  +++  LI      G      A
Sbjct: 218 GATVQVFNAMMGVYARSGRFDDARQLLDTMHDRGIDPDLVSFNTLINARSKSGCLAAGVA 277

Query: 599 LNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
           L+LL  V   G+  DV+ YNT++    +   ++    + E+M  ++ +PD  T + + S 
Sbjct: 278 LDLLFEVRQSGLRPDVITYNTLISACSQSSNLEDAVTVFEEMIASECRPDLWTYNAMVSV 337

Query: 659 YVNCG 663
           +  CG
Sbjct: 338 HGRCG 342



 Score = 41.2 bits (95), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 58/320 (18%), Positives = 122/320 (38%), Gaps = 26/320 (8%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           W+++ ++   GR   +  AE+L  ++   G  P + TY+  + A   +  +       + 
Sbjct: 329 WTYNAMVSVHGRCGKAEEAERLFGELVEKGFMPDAVTYNSLLYAFAKEGNVDKVEHTCEE 388

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR--CT-NPKPFSAFLAACDTMDK 410
           + +   K  + T  T+     K   LDLA  L D++    CT +   ++  + +   MDK
Sbjct: 389 LVKAGFKKNEITYNTMIHMYGKMGRLDLAVGLYDEMRAVGCTPDAVTYTVMIDSLGKMDK 448

Query: 411 PERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
              A K+   M    L+P +  +  L          Y +G    + D+ K  +     M 
Sbjct: 449 IAEAGKVLEDMADAGLKPTLVAFSALI-------CAYAKGG--RRADAEKTFDC----MI 495

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYF----CDSKTPLGTPTYNTVLHSLVEAQES 525
            + ++   ++   +L      G   ++++ +     D+  P     Y  +L +L +  + 
Sbjct: 496 ASGVKPDRLAYLVMLDVFARSGETEKMLRLYRTMMNDNYRP-DDDMYQVLLVALAKEDKC 554

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
               EI + M+            I+I      RC      L+      G+ P   +  ++
Sbjct: 555 EEIEEIIQDMELLCQMSLGVISTILIKA----RCVSQGGKLLKKACLQGYKPDAKSLWSI 610

Query: 586 IKILLDYGDFDEALNLLDLV 605
           +   +     +E L+LL+ +
Sbjct: 611 MNAYVMTEKHEEGLSLLECI 630



 Score = 40.4 bits (93), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 32/156 (20%), Positives = 67/156 (42%), Gaps = 4/156 (2%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
            +N ++     +     A ++   M   GI P+  ++N +I+  S   C  +  AL  + 
Sbjct: 223 VFNAMMGVYARSGRFDDARQLLDTMHDRGIDPDLVSFNTLINARSKSGCLAAGVALDLLF 282

Query: 571 -VR-DGFYPQTMTYTALIKILLDYGDFDEALNLL-DLVSLEGIPHDVLLYNTILKKACEK 627
            VR  G  P  +TY  LI       + ++A+ +  ++++ E  P D+  YN ++      
Sbjct: 283 EVRQSGLRPDVITYNTLISACSQSSNLEDAVTVFEEMIASECRP-DLWTYNAMVSVHGRC 341

Query: 628 GRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
           G+ +  E +  ++ +    PD  T + +   +   G
Sbjct: 342 GKAEEAERLFGELVEKGFMPDAVTYNSLLYAFAKEG 377


>gi|224108788|ref|XP_002314968.1| predicted protein [Populus trichocarpa]
 gi|222864008|gb|EEF01139.1| predicted protein [Populus trichocarpa]
          Length = 662

 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 122/565 (21%), Positives = 223/565 (39%), Gaps = 40/565 (7%)

Query: 111 RMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAK 170
           ++M+ + I  N   +++++ A  + G  E+A    Y +GE +G  P + +YN  L A   
Sbjct: 97  QLMKLEGISCNEDLFVIVINAYRRAGLAEQALKTFYRIGE-FGCKPSVKIYNHVLDALLS 155

Query: 171 LHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIW-EDYIKHYSLSIFS 229
            +     N   + M    +  N  TY  LLK       + A  ++  E   K       S
Sbjct: 156 ENKFQMINGIYNNMKRDGIELNVYTYNMLLKALCKNDRVDAARKLLAEMSYKGCIPDAVS 215

Query: 230 LRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPL-NALPV 288
               V S  RL  ++ A E    + +   +    IN    G  R  +++    L N + V
Sbjct: 216 YTTVVSSMCRLGKVEEARELSMRIKSFVPVYNALIN----GFCREHKMEEVFELFNEMAV 271

Query: 289 MKVLR--WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRN 346
             +     ++S VI+      N  +A  ++ +M   G  P+ HT+   ++       L  
Sbjct: 272 EGIDPDVITYSTVINTLSEMGNVEMALAVLAKMFLRGCSPNVHTFTSLMKGYFMGGRLCE 331

Query: 347 GMEVLKIMQQNNLKPQDSTIATL-SVECS--KALELDLAEALLDQISRCTNPKPFSAFLA 403
            +++   M Q   +P      TL    CS  K +E       +++     N   +S  + 
Sbjct: 332 ALDLWNRMIQEGSEPNTVAYNTLIHGLCSYGKMVEAVSVSQKMERNGVFPNETTYSTLID 391

Query: 404 ACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRIN 462
                     A +I+ KM      P++  Y  +  +           +MF+       ++
Sbjct: 392 GFAKAGDLVGASEIWNKMITNGCLPNVVVYTCMVDVLC-------RNSMFNHA-----LH 439

Query: 463 AIEMDMARNNIQHSHISMKNLLKALGAEG-------MIRELIQYFCDSKTPLGTPTYNTV 515
            IE +MA  N   + I+    +K L   G       ++ ++ QY C         TYN V
Sbjct: 440 LIE-NMANGNCPPNTITFNTFIKGLCCSGKTEWAMKVLNQMRQYGCAPNVT----TYNEV 494

Query: 516 LHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGF 575
           L  L  A+ +  A++I  +++   I  N  TYN ++        FK A  +   ++  G 
Sbjct: 495 LDGLFNAKRTREALQIVGEIEEMEIKSNLVTYNTILSGFCHAGMFKGALQIAGKLLVGGT 554

Query: 576 YPQTMTYTALIKILLDYGDFDEALNLLDLVSL--EGIPHDVLLYNTILKKACEKGRIDVI 633
            P ++TY  +I      G+   A+ L+D ++   EG P DV  Y ++L   C    +D  
Sbjct: 555 KPDSITYNTVIYAYCKQGEVKTAIQLVDRLTKKGEGYP-DVFTYTSLLWGVCNWIGVDEA 613

Query: 634 EFIIEQMHQNKVQPDPSTCHFVFSG 658
              +++M    + P+ +T + +  G
Sbjct: 614 VVHLDKMINEGICPNRATWNALVRG 638



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 90/409 (22%), Positives = 178/409 (43%), Gaps = 35/409 (8%)

Query: 296 FSDVIHACGRTQNSGLAEQLM---LQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
           F  VI+A  R   +GLAEQ +    ++   G +PS   Y+  + A++S+   +    +  
Sbjct: 111 FVIVINAYRR---AGLAEQALKTFYRIGEFGCKPSVKIYNHVLDALLSENKFQMINGIYN 167

Query: 353 IMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMD 409
            M+++ ++    T   L     K   +D A  LL ++S      +   ++  +++   + 
Sbjct: 168 NMKRDGIELNVYTYNMLLKALCKNDRVDAARKLLAEMSYKGCIPDAVSYTTVVSSMCRLG 227

Query: 410 KPERA------IKIFAKMRQKLRPDI---RTYELLFSLFGNVNAPYEEGNMFSQ---VDS 457
           K E A      IK F  +   L          E +F LF  +     + ++ +    +++
Sbjct: 228 KVEEARELSMRIKSFVPVYNALINGFCREHKMEEVFELFNEMAVEGIDPDVITYSTVINT 287

Query: 458 AKRINAIEMDMA-------RNNIQHSHISMKNLLKALGAEGMIRELIQYF---CDSKTPL 507
              +  +EM +A       R    + H +  +L+K     G + E +  +       +  
Sbjct: 288 LSEMGNVEMALAVLAKMFLRGCSPNVH-TFTSLMKGYFMGGRLCEALDLWNRMIQEGSEP 346

Query: 508 GTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALV 567
            T  YNT++H L    +   A+ + ++M+  G+ PN  TY+ +ID  +       AS + 
Sbjct: 347 NTVAYNTLIHGLCSYGKMVEAVSVSQKMERNGVFPNETTYSTLIDGFAKAGDLVGASEIW 406

Query: 568 SMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEK 627
           + M+ +G  P  + YT ++ +L     F+ AL+L++ ++    P + + +NT +K  C  
Sbjct: 407 NKMITNGCLPNVVVYTCMVDVLCRNSMFNHALHLIENMANGNCPPNTITFNTFIKGLCCS 466

Query: 628 GRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
           G+ +    ++ QM Q    P+ +T + V  G  N        EALQ++ 
Sbjct: 467 GKTEWAMKVLNQMRQYGCAPNVTTYNEVLDGLFNA---KRTREALQIVG 512



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 74/164 (45%), Gaps = 3/164 (1%)

Query: 471 NNIQHSHISMKNLLKALGAE---GMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHR 527
           N+ +H+ ++   ++K LG E     I+ L+Q             +  V+++   A  + +
Sbjct: 67  NSFKHTPLTYTTMIKRLGYERDIDGIQYLLQLMKLEGISCNEDLFVIVINAYRRAGLAEQ 126

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A++ F ++   G  P+   YN ++D       F+  + + + M RDG      TY  L+K
Sbjct: 127 ALKTFYRIGEFGCKPSVKIYNHVLDALLSENKFQMINGIYNNMKRDGIELNVYTYNMLLK 186

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
            L      D A  LL  +S +G   D + Y T++   C  G+++
Sbjct: 187 ALCKNDRVDAARKLLAEMSYKGCIPDAVSYTTVVSSMCRLGKVE 230


>gi|356532716|ref|XP_003534917.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 527

 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 92/428 (21%), Positives = 172/428 (40%), Gaps = 48/428 (11%)

Query: 287 PVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRN 346
           P+M+     F+ ++ +  + ++   A  L  QMQ  G++P   T +  I        +  
Sbjct: 9   PIME-----FNKIVGSLVKMKHYPTAISLFKQMQVKGIEPDLFTLNILINCFCHLGQMTF 63

Query: 347 GMEVLKIMQQNNLKPQDSTIATL------SVECSKALELD---LAEAL-LDQISRCTNPK 396
              VL  + +   +P   T+ TL        E  K+L      +A+   +DQ+S      
Sbjct: 64  SFTVLGKILKLGYQPNTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVS------ 117

Query: 397 PFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQV 455
            ++  L     + +   A+K+   +  +  RP++  Y  +           E  +++S++
Sbjct: 118 -YATLLNGLCKIGETRSALKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEM 176

Query: 456 DS--------------------AKRINAIEM--DMARNNIQHSHISMKNLLKALGAEGMI 493
           D+                     + + A  +  +M   NI  +  +   L+ AL  EG +
Sbjct: 177 DARGIFPNVITYSTLIYGFCLAGQLMEAFGLLNEMILKNINPNVYTYTILMDALCKEGKV 236

Query: 494 RE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIM 550
           +E   L+             +YNT++       E   A ++F  M   G+ PN  +YNIM
Sbjct: 237 KEAKNLLAVMTKEGVKPNVVSYNTLMDGYCLIGEVQNAKQMFHTMVQKGVNPNVYSYNIM 296

Query: 551 IDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGI 610
           ID     +    A  L+  ++     P T+TY++LI      G    AL+LL  +   G 
Sbjct: 297 IDRLCKSKRVDEAMNLLREVLHKNMVPNTVTYSSLIDGFCKLGRITSALDLLKEMYHRGQ 356

Query: 611 PHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAME 670
           P DV+ Y ++L   C+   +D    +  +M +  +QP+  T   +  G    G H +A +
Sbjct: 357 PADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPNKYTYTALIDGLCKGGRHKNAQK 416

Query: 671 ALQVLSMR 678
             Q L ++
Sbjct: 417 LFQHLLVK 424



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 77/367 (20%), Positives = 156/367 (42%), Gaps = 16/367 (4%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           S++ +++   +   +  A +L+  ++    +P+   Y+  I  +  D+ +    ++   M
Sbjct: 117 SYATLLNGLCKIGETRSALKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEM 176

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPK--PFSAFLAACDTMDKP 411
               + P   T +TL      A +L  A  LL++ I +  NP    ++  + A     K 
Sbjct: 177 DARGIFPNVITYSTLIYGFCLAGQLMEAFGLLNEMILKNINPNVYTYTILMDALCKEGKV 236

Query: 412 ERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           + A  + A M ++ ++P++ +Y  L   +           +  +V +AK++    +    
Sbjct: 237 KEAKNLLAVMTKEGVKPNVVSYNTLMDGYC----------LIGEVQNAKQMFHTMVQKGV 286

Query: 471 N-NIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAM 529
           N N+   +I +  L K+   +  +  L +    +  P  T TY++++    +      A+
Sbjct: 287 NPNVYSYNIMIDRLCKSKRVDEAMNLLREVLHKNMVP-NTVTYSSLIDGFCKLGRITSAL 345

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
           ++ K+M   G P +  TY  ++D     +    A+AL   M   G  P   TYTALI  L
Sbjct: 346 DLLKEMYHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPNKYTYTALIDGL 405

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649
              G    A  L   + ++G   +V  YN ++   C++G +D    +  +M +N   PD 
Sbjct: 406 CKGGRHKNAQKLFQHLLVKGCRINVWTYNVMISGLCKEGMLDEALAMKSKMEENGCIPDA 465

Query: 650 STCHFVF 656
            T   + 
Sbjct: 466 VTFEIII 472



 Score = 66.6 bits (161), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 77/334 (23%), Positives = 136/334 (40%), Gaps = 16/334 (4%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A  L  +M + G+ P+  TY   I        L     +L  M   N+ P   T   L  
Sbjct: 169 AYDLYSEMDARGIFPNVITYSTLIYGFCLAGQLMEAFGLLNEMILKNINPNVYTYTILMD 228

Query: 372 ECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDKPERAIKIFAKMRQK-LR 426
              K  ++  A+ LL  +++    KP    ++  +     + + + A ++F  M QK + 
Sbjct: 229 ALCKEGKVKEAKNLLAVMTK-EGVKPNVVSYNTLMDGYCLIGEVQNAKQMFHTMVQKGVN 287

Query: 427 PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKA 486
           P++ +Y ++           E  N+  +V        +  +M  N + +S  S+ +    
Sbjct: 288 PNVYSYNIMIDRLCKSKRVDEAMNLLREV--------LHKNMVPNTVTYS--SLIDGFCK 337

Query: 487 LGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAAT 546
           LG      +L++       P    TY ++L +L + Q   +A  +F +MK  GI PN  T
Sbjct: 338 LGRITSALDLLKEMYHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPNKYT 397

Query: 547 YNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVS 606
           Y  +ID        K+A  L   ++  G      TY  +I  L   G  DEAL +   + 
Sbjct: 398 YTALIDGLCKGGRHKNAQKLFQHLLVKGCRINVWTYNVMISGLCKEGMLDEALAMKSKME 457

Query: 607 LEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQM 640
             G   D + +  I++   EK + D  E ++ +M
Sbjct: 458 ENGCIPDAVTFEIIIRSLFEKDQNDKAEKLLHEM 491



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 81/175 (46%)

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           +N ++ SLV+ +    A+ +FKQM+  GI P+  T NI+I+C   +     +  ++  ++
Sbjct: 13  FNKIVGSLVKMKHYPTAISLFKQMQVKGIEPDLFTLNILINCFCHLGQMTFSFTVLGKIL 72

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
           + G+ P T+T   L+K L   G+  ++L+  D V  +G   D + Y T+L   C+ G   
Sbjct: 73  KLGYQPNTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYATLLNGLCKIGETR 132

Query: 632 VIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
               ++  +     +P+    + +  G       N A +    +  R +   V T
Sbjct: 133 SALKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPNVIT 187



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 51/251 (20%), Positives = 105/251 (41%), Gaps = 36/251 (14%)

Query: 106 VMETWRMMEE---KEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYN 162
           +ME + ++ E   K I  N   Y ++M ALCK G ++EA NL+  +  + G+ P +  YN
Sbjct: 201 LMEAFGLLNEMILKNINPNVYTYTILMDALCKEGKVKEAKNLLAVM-TKEGVKPNVVSYN 259

Query: 163 SFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELL-KLAVWQKNLSAVHEIWEDYIK 221
           + +     +  + +A      M  + V  N  +Y  ++ +L   ++   A++ + E   K
Sbjct: 260 TLMDGYCLIGEVQNAKQMFHTMVQKGVNPNVYSYNIMIDRLCKSKRVDEAMNLLREVLHK 319

Query: 222 HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPI 281
           +   +  +    +  F +L  + SA + L+ M                   R    D+  
Sbjct: 320 NMVPNTVTYSSLIDGFCKLGRITSALDLLKEMYH-----------------RGQPADV-- 360

Query: 282 PLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSD 341
                        +++ ++ A  + QN   A  L ++M+  G+QP+ +TY   I  +   
Sbjct: 361 ------------VTYTSLLDALCKNQNLDKATALFMKMKERGIQPNKYTYTALIDGLCKG 408

Query: 342 RGLRNGMEVLK 352
              +N  ++ +
Sbjct: 409 GRHKNAQKLFQ 419



 Score = 48.5 bits (114), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 77/342 (22%), Positives = 132/342 (38%), Gaps = 38/342 (11%)

Query: 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGL---------QPSSHTYDGFIRAIVSDRG 343
           R  F +VI          LA QLM   ++ GL          P+ +TY   + A+  +  
Sbjct: 179 RGIFPNVITYSTLIYGFCLAGQLM---EAFGLLNEMILKNINPNVYTYTILMDALCKEGK 235

Query: 344 LRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALL-DQISRCTNPKPFSAFL 402
           ++    +L +M +  +KP   +  TL        E+  A+ +    + +  NP  +S + 
Sbjct: 236 VKEAKNLLAVMTKEGVKPNVVSYNTLMDGYCLIGEVQNAKQMFHTMVQKGVNPNVYS-YN 294

Query: 403 AACDTMDKPERAIKIFAKMRQKLR----PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSA 458
              D + K +R  +    +R+ L     P+  TY  L   F  +      G + S +D  
Sbjct: 295 IMIDRLCKSKRVDEAMNLLREVLHKNMVPNTVTYSSLIDGFCKL------GRITSALDLL 348

Query: 459 KRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTV 515
           K       +M         ++  +LL AL     + +    F   K     P   TY  +
Sbjct: 349 K-------EMYHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPNKYTYTAL 401

Query: 516 LHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGF 575
           +  L +      A ++F+ +   G   N  TYN+MI           A A+ S M  +G 
Sbjct: 402 IDGLCKGGRHKNAQKLFQHLLVKGCRINVWTYNVMISGLCKEGMLDEALAMKSKMEENGC 461

Query: 576 YPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLY 617
            P  +T+  +I+ L +    D+A  LL     E I  D+L +
Sbjct: 462 IPDAVTFEIIIRSLFEKDQNDKAEKLLH----EMIAKDLLRF 499


>gi|302755512|ref|XP_002961180.1| hypothetical protein SELMODRAFT_21211 [Selaginella moellendorffii]
 gi|300172119|gb|EFJ38719.1| hypothetical protein SELMODRAFT_21211 [Selaginella moellendorffii]
          Length = 497

 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 87/384 (22%), Positives = 152/384 (39%), Gaps = 57/384 (14%)

Query: 323 GLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLA 382
           G +PS   Y   I  +V+++ +    ++LK M++ +    DS                  
Sbjct: 46  GHRPSVECYTVAIAEVVAEKKMSEAQQLLKQMEEEDGLAPDSVC---------------- 89

Query: 383 EALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGN 441
                          F+  +       + E A+++  +MRQK  RP   TY  L   +G 
Sbjct: 90  ---------------FNTVINGWCNEGQMEEAMRVVQEMRQKNCRPTTSTYNTLIKGYGV 134

Query: 442 VNAPYEEGNMFSQVDSAKRINAIEMD----MARNNIQHSHISMKNLLKALGAEGMIRELI 497
                +   +   + +  R +    D    +AR N++    +M  LL A   EG + E  
Sbjct: 135 AGQAEQAQQLVLHLLNKTRNSPSSEDGLEPVARPNLR----TMNTLLNAWCREGRLEEAW 190

Query: 498 QYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCC 554
           +     K+    P   TYNT+  +   A       ++   MK   + PN  TY I+I C 
Sbjct: 191 RVVAMIKSAGMQPDAVTYNTLAKAYAAAGRVAELEDLIADMKNARLKPNLRTYAILISCY 250

Query: 555 SIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYG-----------DFDEALNL-- 601
                 +    L+S +  +G +P  + +  L+K  ++             + D+ L L  
Sbjct: 251 CQNGMPERGLQLLSRLKFEGLHPDVVAFNTLLKGYVEQQSSQQQQDFQSQENDQQLKLEM 310

Query: 602 -LDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYV 660
            LDL++  G+  DV  Y+TI+      G  D  + I+ +M Q++V+PD      +  GYV
Sbjct: 311 VLDLMAANGVRPDVTTYSTIMNWWSSAGVADKAQTILLEMQQDRVKPDVRAFAILAKGYV 370

Query: 661 NCGFHNSAMEALQVLSMRMLCEEV 684
             G  + A   LQ +S+  +   V
Sbjct: 371 RSGRTHEAESLLQDMSLHGVAPNV 394



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 89/387 (22%), Positives = 164/387 (42%), Gaps = 56/387 (14%)

Query: 312 AEQLMLQMQSL-GLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL- 369
           A+QL+ QM+   GL P S  ++  I    ++  +   M V++ M+Q N +P  ST  TL 
Sbjct: 70  AQQLLKQMEEEDGLAPDSVCFNTVINGWCNEGQMEEAMRVVQEMRQKNCRPTTSTYNTLI 129

Query: 370 -------SVECSKALELDL---------AEALLDQISRCTNPKPFSAFLAACDTMDKPER 413
                    E ++ L L L         +E  L+ ++R  N +  +  L A     + E 
Sbjct: 130 KGYGVAGQAEQAQQLVLHLLNKTRNSPSSEDGLEPVAR-PNLRTMNTLLNAWCREGRLEE 188

Query: 414 AIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAK-----RINAIEMD 467
           A ++ A ++   ++PD  TY  L   +       E  ++ + + +A+     R  AI + 
Sbjct: 189 AWRVVAMIKSAGMQPDAVTYNTLAKAYAAAGRVAELEDLIADMKNARLKPNLRTYAILIS 248

Query: 468 -MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQ--- 523
              +N +    +    LL  L  EG+  +++              +NT+L   VE Q   
Sbjct: 249 CYCQNGMPERGL---QLLSRLKFEGLHPDVV-------------AFNTLLKGYVEQQSSQ 292

Query: 524 --------ESHRAME---IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVR 572
                   E+ + ++   +   M   G+ P+  TY+ +++  S       A  ++  M +
Sbjct: 293 QQQDFQSQENDQQLKLEMVLDLMAANGVRPDVTTYSTIMNWWSSAGVADKAQTILLEMQQ 352

Query: 573 DGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDV 632
           D   P    +  L K  +  G   EA +LL  +SL G+  +V++Y TI+   C  GR+D 
Sbjct: 353 DRVKPDVRAFAILAKGYVRSGRTHEAESLLQDMSLHGVAPNVVVYTTIISGWCSMGRMDD 412

Query: 633 IEFIIEQMHQNKVQPDPSTCHFVFSGY 659
              ++E M +    P+ +T   +  G+
Sbjct: 413 ALRVLELMLERGEAPNLNTVQTLVWGF 439



 Score = 43.9 bits (102), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 59/318 (18%), Positives = 124/318 (38%), Gaps = 68/318 (21%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A +++  ++S G+QP + TY+   +A  +   +    +++  M+   LKP   T A L +
Sbjct: 189 AWRVVAMIKSAGMQPDAVTYNTLAKAYAAAGRVAELEDLIADMKNARLKPNLRTYAIL-I 247

Query: 372 ECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMR-QKLRPDIR 430
            C                  C N                PER +++ ++++ + L PD+ 
Sbjct: 248 SCY-----------------CQN--------------GMPERGLQLLSRLKFEGLHPDVV 276

Query: 431 TYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAE 490
            +  L   +               V+        +     N+ Q   + ++ +L  + A 
Sbjct: 277 AFNTLLKGY---------------VEQQSSQQQQDFQSQENDQQ---LKLEMVLDLMAAN 318

Query: 491 GMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIM 550
           G+  ++              TY+T+++    A  + +A  I  +M+   + P+   + I+
Sbjct: 319 GVRPDVT-------------TYSTIMNWWSSAGVADKAQTILLEMQQDRVKPDVRAFAIL 365

Query: 551 IDCCSIIRCFKS--ASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLE 608
                 +R  ++  A +L+  M   G  P  + YT +I      G  D+AL +L+L+   
Sbjct: 366 AK--GYVRSGRTHEAESLLQDMSLHGVAPNVVVYTTIISGWCSMGRMDDALRVLELMLER 423

Query: 609 GIPHDVLLYNTILKKACE 626
           G   ++    T++   CE
Sbjct: 424 GEAPNLNTVQTLVWGFCE 441


>gi|255581046|ref|XP_002531339.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223529061|gb|EEF31046.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 630

 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 77/342 (22%), Positives = 139/342 (40%), Gaps = 65/342 (19%)

Query: 311 LAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLS 370
           L E +   M S G++P   T++  I+A+     +R  + V++ M    L P + T  TL 
Sbjct: 176 LVENVHSTMVSKGIKPDVSTFNILIKALCKAHQIRPAILVMEEMSSYGLVPDEKTFTTLM 235

Query: 371 VECSKALELDLAEALLDQISRCTNPKPFS-------------------AFLAACDTMDKP 411
               +   +D A  + +Q+     P                       +F+       K 
Sbjct: 236 QGFIEEGNMDGAFRVKEQMLDAGCPVTNVTVNVLVHGFCKEGRIEEALSFIDEMSNEGKH 295

Query: 412 ERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
             AI+++ +M+ K  +PD  TY +L                   +DS            R
Sbjct: 296 TMAIELYNEMKNKGCQPDEFTYNML-------------------IDSL---------CYR 327

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAME 530
             +Q +      LL+ +   G  R +I             TYNT++    + ++   A E
Sbjct: 328 GKLQEAL----GLLREMEISGCARNVI-------------TYNTLIDGFCKNKKIEEAEE 370

Query: 531 IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590
           IF QM+  G+  N+ TYN +ID     R  + A+ L+  M+ +G  P   TY +++    
Sbjct: 371 IFDQMEIQGLSRNSVTYNTLIDGLCKSRRVQEAAQLMDQMIMEGLKPDKFTYNSMLTYFC 430

Query: 591 DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDV 632
             GD  +A +++  ++  G   D++ Y T++   C+ GR++V
Sbjct: 431 REGDIQKAADIVQTMTSNGCEPDIVTYGTLIGGLCKAGRVEV 472



 Score = 69.3 bits (168), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 83/337 (24%), Positives = 135/337 (40%), Gaps = 31/337 (9%)

Query: 425 LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA-------RNNIQHSH 477
           L PD +T+  L   F       EEGNM    D A R+    +D          N + H  
Sbjct: 224 LVPDEKTFTTLMQGF------IEEGNM----DGAFRVKEQMLDAGCPVTNVTVNVLVHGF 273

Query: 478 ISMKNLLKALG------AEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRA 528
                + +AL        EG     I+ + + K     P   TYN ++ SL    +   A
Sbjct: 274 CKEGRIEEALSFIDEMSNEGKHTMAIELYNEMKNKGCQPDEFTYNMLIDSLCYRGKLQEA 333

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
           + + ++M+  G   N  TYN +ID     +  + A  +   M   G    ++TY  LI  
Sbjct: 334 LGLLREMEISGCARNVITYNTLIDGFCKNKKIEEAEEIFDQMEIQGLSRNSVTYNTLIDG 393

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
           L       EA  L+D + +EG+  D   YN++L   C +G I     I++ M  N  +PD
Sbjct: 394 LCKSRRVQEAAQLMDQMIMEGLKPDKFTYNSMLTYFCREGDIQKAADIVQTMTSNGCEPD 453

Query: 649 PSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDFEDLILAEDSEAESR 708
             T   +  G    G    A   L+ + ++ +   V T        + L   + ++   R
Sbjct: 454 IVTYGTLIGGLCKAGRVEVASRLLRSIQLKGM---VLTPHAYNPVIQALFKRKRTKEAMR 510

Query: 709 ILQFCED-SNENLAFTAALLQLRWCTIVGFPISWSLD 744
           + +  E+  N   AFT  ++  R  +  G PI  ++D
Sbjct: 511 LFREMEEKGNTPDAFTYKIV-FRGLSNSGGPIGEAVD 546



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 68/303 (22%), Positives = 126/303 (41%), Gaps = 21/303 (6%)

Query: 311 LAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLS 370
           +A +L  +M++ G QP   TY+  I ++     L+  + +L+ M+ +       T  TL 
Sbjct: 297 MAIELYNEMKNKGCQPDEFTYNMLIDSLCYRGKLQEALGLLREMEISGCARNVITYNTLI 356

Query: 371 VECSKALELDLAEALLDQI---SRCTNPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLR 426
               K  +++ AE + DQ+       N   ++  +       + + A ++  +M  + L+
Sbjct: 357 DGFCKNKKIEEAEEIFDQMEIQGLSRNSVTYNTLIDGLCKSRRVQEAAQLMDQMIMEGLK 416

Query: 427 PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKA 486
           PD  TY  + + F        EG++    D       I   M  N  +   ++   L+  
Sbjct: 417 PDKFTYNSMLTYF------CREGDIQKAAD-------IVQTMTSNGCEPDIVTYGTLIGG 463

Query: 487 LGAEGMIR---ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPN 543
           L   G +     L++        L    YN V+ +L + + +  AM +F++M+  G  P+
Sbjct: 464 LCKAGRVEVASRLLRSIQLKGMVLTPHAYNPVIQALFKRKRTKEAMRLFREMEEKGNTPD 523

Query: 544 AATYNIMIDCCSIIRC-FKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL 602
           A TY I+    S        A   V  M+  GF P+  ++  L + L      D  + L+
Sbjct: 524 AFTYKIVFRGLSNSGGPIGEAVDFVIEMIEKGFLPEFSSFYMLAEGLCSLSMEDTLIKLV 583

Query: 603 DLV 605
           DLV
Sbjct: 584 DLV 586



 Score = 55.1 bits (131), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 72/159 (45%), Gaps = 4/159 (2%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ +I    +++    A QLM QM   GL+P   TY+  +     +  ++   ++++ M
Sbjct: 386 TYNTLIDGLCKSRRVQEAAQLMDQMIMEGLKPDKFTYNSMLTYFCREGDIQKAADIVQTM 445

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQI---SRCTNPKPFSAFLAACDTMDKP 411
             N  +P   T  TL     KA  +++A  LL  I        P  ++  + A     + 
Sbjct: 446 TSNGCEPDIVTYGTLIGGLCKAGRVEVASRLLRSIQLKGMVLTPHAYNPVIQALFKRKRT 505

Query: 412 ERAIKIFAKMRQKLR-PDIRTYELLFSLFGNVNAPYEEG 449
           + A+++F +M +K   PD  TY+++F    N   P  E 
Sbjct: 506 KEAMRLFREMEEKGNTPDAFTYKIVFRGLSNSGGPIGEA 544



 Score = 48.5 bits (114), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 61/282 (21%), Positives = 120/282 (42%), Gaps = 14/282 (4%)

Query: 107 METWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLG 166
           +E +  M+ K    +   Y +++ +LC  G L+EA  L+  + E  G    +  YN+ + 
Sbjct: 299 IELYNEMKNKGCQPDEFTYNMLIDSLCYRGKLQEALGLLREM-EISGCARNVITYNTLID 357

Query: 167 ACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYSL 225
              K   +  A    D M+ + + +N VTY  L+      + +    ++ +  I +    
Sbjct: 358 GFCKNKKIEEAEEIFDQMEIQGLSRNSVTYNTLIDGLCKSRRVQEAAQLMDQMIMEGLKP 417

Query: 226 SIFSLRKFVWSFTRLRDLKSAYETLQHMVA------LAMMGKLYINRTSEGRLR-SSRLD 278
             F+    +  F R  D++ A + +Q M +      +   G L       GR+  +SRL 
Sbjct: 418 DKFTYNSMLTYFCREGDIQKAADIVQTMTSNGCEPDIVTYGTLIGGLCKAGRVEVASRLL 477

Query: 279 IPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAI 338
             I L     M +   +++ VI A  + + +  A +L  +M+  G  P + TY    R +
Sbjct: 478 RSIQLKG---MVLTPHAYNPVIQALFKRKRTKEAMRLFREMEEKGNTPDAFTYKIVFRGL 534

Query: 339 VSDRG-LRNGMEVLKIMQQNNLKPQDSTIATLSVE-CSKALE 378
            +  G +   ++ +  M +    P+ S+   L+   CS ++E
Sbjct: 535 SNSGGPIGEAVDFVIEMIEKGFLPEFSSFYMLAEGLCSLSME 576



 Score = 47.0 bits (110), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 71/170 (41%), Gaps = 4/170 (2%)

Query: 503 SKTPLGTPT---YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRC 559
           SK P   P    Y  +L  L +    +   +I ++MK      +     I ID  +    
Sbjct: 78  SKQPNFRPNSSIYEEILRKLGKVGSFNSMKDILQEMKGLDCQIDRGVLLIFIDSYAKFEL 137

Query: 560 FKSASALVSMM-VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYN 618
           ++    +V +M V  G    T+ Y  L+ +L+D        N+   +  +GI  DV  +N
Sbjct: 138 YEEILCIVEVMEVEFGLALDTLLYNFLLNVLVDGNKLKLVENVHSTMVSKGIKPDVSTFN 197

Query: 619 TILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSA 668
            ++K  C+  +I     ++E+M    + PD  T   +  G++  G  + A
Sbjct: 198 ILIKALCKAHQIRPAILVMEEMSSYGLVPDEKTFTTLMQGFIEEGNMDGA 247


>gi|357115764|ref|XP_003559656.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 867

 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 90/397 (22%), Positives = 168/397 (42%), Gaps = 34/397 (8%)

Query: 294 WSFSDVIHA-CGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
           +S++ VI + CG +++    + L+   +  G  P   +Y   I  +  +  +     +  
Sbjct: 237 FSYNTVIKSLCGGSRSQEALDMLLRMTKGDGCSPDVVSYTMVIHGLFMEGEISKACNLFN 296

Query: 353 IMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI---SRCTNPKPFSAFLAACDTMD 409
            M Q  + P   T  ++     KA  +D AE +L Q+   S   +   ++A +     + 
Sbjct: 297 EMVQKGVVPNVVTYNSIVHALCKARAMDKAELVLRQMFDNSIQPDEVTYTAMIHGYSCLG 356

Query: 410 KPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
           + + A K+F +M R+ L PDI T+  L           E   +F  +             
Sbjct: 357 RWKEAAKMFKEMTREGLIPDIVTFNSLMDSLCKHKRSKEAAEIFHSI------------- 403

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRELIQYF---CDSKTPLGTPTYNTVLHSLVEAQES 525
           A    +   IS   LL     EG   ++   F    D+     +  +N ++++  +    
Sbjct: 404 ATKGHKPDIISYSILLHGYATEGRFVDMNNLFHSMTDNGIVADSHCFNILINAHAKRGMM 463

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASAL--VSMMVRDGFYPQTMTYT 583
             A+ IF +M+  G+ PN  TY  +I   ++ R  + A A+  +S M+  G  P T+ Y 
Sbjct: 464 DEALLIFTEMRGQGVSPNVVTYATVI--AALCRMGRLADAMEKLSQMISIGLKPNTVVYH 521

Query: 584 ALIKILLDYGDFDEALNLLDLVSLEGIPH-DVLLYNTILKKACEKGRI----DVIEFIIE 638
           +LI+    +GD  +A  L+  +  +GIP  ++  +++I+   C +GR+    DV   +I 
Sbjct: 522 SLIQGFCTHGDLIKAKELVSEMMDQGIPRPNITFFSSIIHSLCNEGRVMNAQDVFNLVI- 580

Query: 639 QMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
             H    +PD  T + +  GY   G  + A   L  +
Sbjct: 581 --HIGD-RPDIFTFNSLIDGYCLVGKMDKAFGVLDAM 614



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 85/177 (48%), Gaps = 2/177 (1%)

Query: 513 NTVLHSLVEAQESHRAME-IFKQMKTCGIPPNAATYNIMIDC-CSIIRCFKSASALVSMM 570
           NT L  L  A+ +  A+  +  +M   G  P+A +YN +I   C   R  ++   L+ M 
Sbjct: 204 NTFLKCLCYAKRTDEALSMLLHRMSELGCVPDAFSYNTVIKSLCGGSRSQEALDMLLRMT 263

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
             DG  P  ++YT +I  L   G+  +A NL + +  +G+  +V+ YN+I+   C+   +
Sbjct: 264 KGDGCSPDVVSYTMVIHGLFMEGEISKACNLFNEMVQKGVVPNVVTYNSIVHALCKARAM 323

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTL 687
           D  E ++ QM  N +QPD  T   +  GY   G    A +  + ++   L  ++ T 
Sbjct: 324 DKAELVLRQMFDNSIQPDEVTYTAMIHGYSCLGRWKEAAKMFKEMTREGLIPDIVTF 380



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 141/704 (20%), Positives = 269/704 (38%), Gaps = 62/704 (8%)

Query: 4   PLLRTRFQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDAL 63
           PL    + ++ D  C++      RR        +R L    GL  + I   T ++    L
Sbjct: 162 PLTVHTYGILMDCCCRA------RRPDLGPAFFARLLRA--GLRTDGIVTNTFLK---CL 210

Query: 64  CRGERSRAS-----HLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEI 118
           C  +R+  +     H +  LG    +   +     L   +RS + L ++   RM +    
Sbjct: 211 CYAKRTDEALSMLLHRMSELGCVPDAFSYNTVIKSLCGGSRSQEALDML--LRMTKGDGC 268

Query: 119 GLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHAN 178
             +   Y +++  L   G + +A NL   + ++ G+ P +  YNS + A  K  +M  A 
Sbjct: 269 SPDVVSYTMVIHGLFMEGEISKACNLFNEMVQK-GVVPNVVTYNSIVHALCKARAMDKAE 327

Query: 179 LCLDLMDSRMVGKNEVTYTELLK----LAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFV 234
           L L  M    +  +EVTYT ++     L  W++      E+  + +    ++  SL   +
Sbjct: 328 LVLRQMFDNSIQPDEVTYTAMIHGYSCLGRWKEAAKMFKEMTREGLIPDIVTFNSLMDSL 387

Query: 235 WSFTRLRDLKSAYETLQ---HMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKV 291
               R ++    + ++    H   +     L     +EGR     +D+    +++    +
Sbjct: 388 CKHKRSKEAAEIFHSIATKGHKPDIISYSILLHGYATEGRF----VDMNNLFHSMTDNGI 443

Query: 292 LRWS--FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGME 349
           +  S  F+ +I+A  +      A  +  +M+  G+ P+  TY   I A+     L + ME
Sbjct: 444 VADSHCFNILINAHAKRGMMDEALLIFTEMRGQGVSPNVVTYATVIAALCRMGRLADAME 503

Query: 350 VLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAAC 405
            L  M    LKP      +L        +L  A+ L+ ++     P+P    FS+ + + 
Sbjct: 504 KLSQMISIGLKPNTVVYHSLIQGFCTHGDLIKAKELVSEMMDQGIPRPNITFFSSIIHSL 563

Query: 406 DTMDKPERAIKIF-AKMRQKLRPDIRTYELLF----------SLFGNVNAPYEEGNMFSQ 454
               +   A  +F   +    RPDI T+  L             FG ++A    G     
Sbjct: 564 CNEGRVMNAQDVFNLVIHIGDRPDIFTFNSLIDGYCLVGKMDKAFGVLDAMVSAGTEPDV 623

Query: 455 VDSAKRINA------------IEMDMARNNIQHSHISMKNLLKAL---GAEGMIRELIQY 499
           V  +  IN             +  +M    ++ + ++   +L  L   G     +++   
Sbjct: 624 VTYSTLINGYFKSGRIDDGLILFREMLCKRVKPTTVTYSLVLDGLFRAGRTSAAKKMFHE 683

Query: 500 FCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRC 559
             +S T +   TY  +L  L     +  A+ +F ++    +    A  N MI     ++ 
Sbjct: 684 MIESGTAMSISTYTIILQGLCRNNCTDEAITLFHKLGAMNLKFEIAILNTMIHALYKVKR 743

Query: 560 FKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNT 619
            + A  L + +   G  P   TY  +I  LL  G  +EA  +   +   G      L N 
Sbjct: 744 REEAHDLFASVSASGLVPNASTYGVMIINLLKEGSVEEADIMFSSMEKTGCAPSSRLLND 803

Query: 620 ILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
           I++   +KG I    + + ++    +  + ST   + S + + G
Sbjct: 804 IIRMLLQKGEIVKAGYYMSKVDGTIISLEASTTSLLISLFASKG 847



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/272 (22%), Positives = 118/272 (43%), Gaps = 22/272 (8%)

Query: 413 RAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471
           +A  +F +M QK + P++ TY  +        A          +D A+    +   M  N
Sbjct: 290 KACNLFNEMVQKGVVPNVVTYNSIVHALCKARA----------MDKAE---LVLRQMFDN 336

Query: 472 NIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRA 528
           +IQ   ++   ++      G  +E  + F +       P   T+N+++ SL + + S  A
Sbjct: 337 SIQPDEVTYTAMIHGYSCLGRWKEAAKMFKEMTREGLIPDIVTFNSLMDSLCKHKRSKEA 396

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
            EIF  + T G  P+  +Y+I++   +    F   + L   M  +G    +  +  LI  
Sbjct: 397 AEIFHSIATKGHKPDIISYSILLHGYATEGRFVDMNNLFHSMTDNGIVADSHCFNILINA 456

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI-DVIEFIIEQMHQNKVQP 647
               G  DEAL +   +  +G+  +V+ Y T++   C  GR+ D +E  + QM    ++P
Sbjct: 457 HAKRGMMDEALLIFTEMRGQGVSPNVVTYATVIAALCRMGRLADAME-KLSQMISIGLKP 515

Query: 648 DPSTCHFVFSGYVNCGFHNSAMEALQVLSMRM 679
           +    H +  G+     H   ++A +++S  M
Sbjct: 516 NTVVYHSLIQGFCT---HGDLIKAKELVSEMM 544



 Score = 44.7 bits (104), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 2/121 (1%)

Query: 540 IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEAL 599
           +P    TY I++DCC   R      A  + ++R G     +     +K L      DEAL
Sbjct: 161 VPLTVHTYGILMDCCCRARRPDLGPAFFARLLRAGLRTDGIVTNTFLKCLCYAKRTDEAL 220

Query: 600 N-LLDLVSLEGIPHDVLLYNTILKKACEKGRI-DVIEFIIEQMHQNKVQPDPSTCHFVFS 657
           + LL  +S  G   D   YNT++K  C   R  + ++ ++     +   PD  +   V  
Sbjct: 221 SMLLHRMSELGCVPDAFSYNTVIKSLCGGSRSQEALDMLLRMTKGDGCSPDVVSYTMVIH 280

Query: 658 G 658
           G
Sbjct: 281 G 281


>gi|449462136|ref|XP_004148797.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 87/394 (22%), Positives = 157/394 (39%), Gaps = 52/394 (13%)

Query: 315 LMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECS 374
           L   M+  GL P+  TY+  ++A+  +  +    ++   M      P   T  T+     
Sbjct: 166 LYTNMKKDGLIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLC 225

Query: 375 KALELDLAEALLDQISRCTNPKP-FSAFLAACDTMDKPER---AIKIFAKMRQK-LRPDI 429
           KA ++D A  L  +       KP    + A  D M K  R   AIK+  +M    + P++
Sbjct: 226 KAGKIDDARELAGRF------KPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNV 279

Query: 430 RTY-------------ELLFSLFGN----------------VNAPYEEGNMFSQVDSAKR 460
            +Y             EL F+LF                  +   +  G ++  +D  K 
Sbjct: 280 VSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKL 339

Query: 461 INAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLG----TPTYNTVL 516
                  M ++  + + ++   L+  L + G + E +Q  CD     G      TY+ ++
Sbjct: 340 -------MIQDGCEPNVVAYNTLIHGLCSNGSLEEALQ-VCDQMQRSGCLPNVTTYSILI 391

Query: 517 HSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFY 576
               ++ +   A E + +M + G  PN  TY  M+D       F  A++LV  M  +G  
Sbjct: 392 DGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCT 451

Query: 577 PQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFI 636
           P TMT+   IK L   G  + A+ LL+ +   G   ++  YN +L       + +    +
Sbjct: 452 PNTMTFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGL 511

Query: 637 IEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAME 670
            +++    +QP+  T + V  G+   G    A++
Sbjct: 512 FQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQ 545



 Score = 79.3 bits (194), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 122/571 (21%), Positives = 213/571 (37%), Gaps = 59/571 (10%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           ++ ++    + G  E+A  + Y +GE +G  P + +YN  L A    +     N     M
Sbjct: 112 FICIINGYKRVGSAEQALKMFYRIGE-FGCKPTVRIYNHLLDALLSENKFQMINPLYTNM 170

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIW-EDYIKHYSLSIFSLRKFVWSFTRLRDL 243
               +  N  TY  LLK       + A H+++ E   K       +    V S  +   +
Sbjct: 171 KKDGLIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKI 230

Query: 244 KSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPL------NALPVMKVLRWSFS 297
             A E          +     N   +G  +  R+++ I L      N +    V   S+S
Sbjct: 231 DDARELAGRFKPSVPV----YNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVV---SYS 283

Query: 298 DVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQN 357
            +I++   + N  LA  L  QM   G   + HT+   I+       L   +++ K+M Q+
Sbjct: 284 CIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQD 343

Query: 358 NLKPQDSTIATL-SVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIK 416
             +P      TL    CS      L EA                 L  CD M        
Sbjct: 344 GCEPNVVAYNTLIHGLCSNG---SLEEA-----------------LQVCDQMQ------- 376

Query: 417 IFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHS 476
                R    P++ TY +L   F       + G++   V +++  N +     R N+  +
Sbjct: 377 -----RSGCLPNVTTYSILIDGFA------KSGDL---VGASETWNRMISHGCRPNVV-T 421

Query: 477 HISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMK 536
           +  M ++L           L++          T T+NT +  L        AM++ ++M+
Sbjct: 422 YTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTMTFNTFIKGLCGNGRVEWAMKLLERMQ 481

Query: 537 TCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFD 596
             G  PN  TYN ++D    +  ++ A  L   +      P  +TY  ++      G   
Sbjct: 482 GHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMG 541

Query: 597 EALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK-VQPDPSTCHFV 655
           EAL L     + G   D + YNT++   C++G++ +   ++E++   K   PD  T   +
Sbjct: 542 EALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERVSSMKEWHPDIITYTSL 601

Query: 656 FSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
             G  N      AM  L     + +C   +T
Sbjct: 602 IWGACNWMNIEEAMAFLDKAINQGICPNFAT 632



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 111/500 (22%), Positives = 204/500 (40%), Gaps = 71/500 (14%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFL-GACAKLHSMVHANLCLDL 183
           Y  M+ +LCK G +++A  L      R+   P +PVYN+ + G C +    V   L  ++
Sbjct: 217 YTTMVSSLCKAGKIDDAREL----AGRFK--PSVPVYNALIDGMCKEGRIEVAIKLLGEM 270

Query: 184 MDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWED-YIKHYSLSIFSLRKFV-WSFTRLR 241
           MD+  V  N V+Y+ ++       N+     ++   +++    +I +    +   F R +
Sbjct: 271 MDNG-VDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGK 329

Query: 242 DLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIH 301
                YE L        + KL I    E  + +                     ++ +IH
Sbjct: 330 ----LYEALD-------LWKLMIQDGCEPNVVA---------------------YNTLIH 357

Query: 302 ACGRTQNSGLAEQLML--QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNL 359
             G   N  L E L +  QMQ  G  P+  TY   I        L    E    M  +  
Sbjct: 358 --GLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGC 415

Query: 360 KPQDSTIATLSVECSKALELDLAEALLDQIS--RCT-NPKPFSAFLAACDTMDKPERAIK 416
           +P   T   +     K    D A +L+++++   CT N   F+ F+       + E A+K
Sbjct: 416 RPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTMTFNTFIKGLCGNGRVEWAMK 475

Query: 417 IFAKMR-QKLRPDIRTY-ELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQ 474
           +  +M+     P+I TY ELL +LF  +N   E   +F ++++              N+Q
Sbjct: 476 LLERMQGHGCLPNITTYNELLDALF-RMNKYEEAFGLFQEIEA-------------RNLQ 521

Query: 475 HSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEI 531
            + ++   +L      GM+ E +Q F  +      P   TYNT++H+  +  +   A ++
Sbjct: 522 PNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQL 581

Query: 532 FKQMKTCG-IPPNAATYNIMI-DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
            +++ +     P+  TY  +I   C+ +   + A A +   +  G  P   T+ AL++  
Sbjct: 582 VERVSSMKEWHPDIITYTSLIWGACNWMN-IEEAMAFLDKAINQGICPNFATWNALVRCF 640

Query: 590 LDYGDFDEALNLLDLVSLEG 609
            D       +++LD +  +G
Sbjct: 641 FDSLGHMGPIHILDDILRKG 660



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 74/164 (45%), Gaps = 3/164 (1%)

Query: 471 NNIQHSHISMKNLLKALGAE---GMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHR 527
           N  QH+  + + +++ LG E    M++ ++Q             +  +++       + +
Sbjct: 68  NAFQHTASTYRVMIERLGRECEMDMVQYILQQMKMDGINCCEDLFICIINGYKRVGSAEQ 127

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A+++F ++   G  P    YN ++D       F+  + L + M +DG  P   TY  L+K
Sbjct: 128 ALKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNILLK 187

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
            L      D A  L   +S +G P D + Y T++   C+ G+ID
Sbjct: 188 ALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKID 231


>gi|356528166|ref|XP_003532676.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Glycine max]
          Length = 852

 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 91/432 (21%), Positives = 173/432 (40%), Gaps = 34/432 (7%)

Query: 283 LNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDR 342
           +N   V+  +R S ++++H   ++   GLA      M   GL PS  TY+  I  +  + 
Sbjct: 207 MNKFRVLPKVR-SCNELLHRLSKSSKGGLALSFFKDMVVAGLSPSVFTYNMVIGCLAREG 265

Query: 343 GLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFL 402
            L     + + M+   L+P   T  +L     K   L  A ++ +++           + 
Sbjct: 266 DLEAARSLFEEMKAKGLRPDIVTYNSLIDGYGKVGMLTGAVSVFEEMKDAGCEPDVITYN 325

Query: 403 AACDTMDKPER---AIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMF------ 452
           +  +   K ER   A +    M+Q+ L+P++ TY  L   F       E    F      
Sbjct: 326 SLINCFCKFERIPQAFEYLHGMKQRGLQPNVVTYSTLIDAFCKAGMLLEANKFFVDMIRV 385

Query: 453 ----------SQVDSAKRIN------AIEMDMARNNIQHSHISMKNLLKALGAEGMIREL 496
                     S +D+  +I        +E +M +  +  + ++   LL  L  +G +RE 
Sbjct: 386 GLQPNEFTYTSLIDANCKIGDLNEAFKLESEMQQAGVNLNIVTYTALLDGLCEDGRMREA 445

Query: 497 IQYF---CDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC 553
            + F     +   L    Y ++ H  ++A+   +AM+I ++M    + P+   Y   I  
Sbjct: 446 EELFGALLKAGWTLNQQIYTSLFHGYIKAKMMEKAMDILEEMNKKNLKPDLLLYGTKIWG 505

Query: 554 CSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHD 613
                  + + A++  M+  G    +  YT LI      G   EA+NLL  +   GI   
Sbjct: 506 LCRQNEIEDSMAVIREMMDCGLTANSYIYTTLIDAYFKVGKTTEAVNLLQEMQDLGIKIT 565

Query: 614 VLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           V+ Y  ++   C+ G +       + M +N +QP+      +++  ++    N  +E  +
Sbjct: 566 VVTYGVLIDGLCKIGLVQQAVRYFDHMTRNGLQPNI----MIYTALIDGLCKNDCLEEAK 621

Query: 674 VLSMRMLCEEVS 685
            L   ML + +S
Sbjct: 622 NLFNEMLDKGIS 633



 Score = 76.6 bits (187), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 75/362 (20%), Positives = 147/362 (40%), Gaps = 14/362 (3%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A +  + M  +GLQP+  TY   I A      L    ++   MQQ  +     T   L  
Sbjct: 375 ANKFFVDMIRVGLQPNEFTYTSLIDANCKIGDLNEAFKLESEMQQAGVNLNIVTYTALLD 434

Query: 372 ECSKALELDLAEALLDQISRCT---NPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRP 427
              +   +  AE L   + +     N + +++           E+A+ I  +M +K L+P
Sbjct: 435 GLCEDGRMREAEELFGALLKAGWTLNQQIYTSLFHGYIKAKMMEKAMDILEEMNKKNLKP 494

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL 487
           D+  Y     ++G            ++++ +  +    MD       + + ++ +    +
Sbjct: 495 DLLLYGT--KIWGLCRQ--------NEIEDSMAVIREMMDCGLTANSYIYTTLIDAYFKV 544

Query: 488 GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATY 547
           G       L+Q   D    +   TY  ++  L +     +A+  F  M   G+ PN   Y
Sbjct: 545 GKTTEAVNLLQEMQDLGIKITVVTYGVLIDGLCKIGLVQQAVRYFDHMTRNGLQPNIMIY 604

Query: 548 NIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSL 607
             +ID      C + A  L + M+  G  P  + YT+LI   + +G+  EAL+L + +  
Sbjct: 605 TALIDGLCKNDCLEEAKNLFNEMLDKGISPDKLVYTSLIDGNMKHGNPGEALSLRNRMVE 664

Query: 608 EGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNS 667
            G+  D+  Y +++      G++ + + ++++M +  + PD   C  +   Y   G  N 
Sbjct: 665 IGMELDLCAYTSLIWGFSRYGQVQLAKSLLDEMLRKGIIPDQVLCICLLRKYYELGDINE 724

Query: 668 AM 669
           A+
Sbjct: 725 AL 726



 Score = 49.3 bits (116), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 89/467 (19%), Positives = 170/467 (36%), Gaps = 54/467 (11%)

Query: 153 GIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAV 212
           G  P +  YNS +    K   +  A   L  M  R +  N VTY+ L+        L   
Sbjct: 316 GCEPDVITYNSLINCFCKFERIPQAFEYLHGMKQRGLQPNVVTYSTLIDAFCKAGMLLEA 375

Query: 213 HEIWEDYIK-HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGR 271
           ++ + D I+     + F+    + +  ++ DL  A+                       +
Sbjct: 376 NKFFVDMIRVGLQPNEFTYTSLIDANCKIGDLNEAF-----------------------K 412

Query: 272 LRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTY 331
           L S      + LN +    +L     D +   GR +    AE+L   +   G   +   Y
Sbjct: 413 LESEMQQAGVNLNIVTYTALL-----DGLCEDGRMRE---AEELFGALLKAGWTLNQQIY 464

Query: 332 DGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR 391
                  +  + +   M++L+ M + NLKP      T      +  E++ + A++ ++  
Sbjct: 465 TSLFHGYIKAKMMEKAMDILEEMNKKNLKPDLLLYGTKIWGLCRQNEIEDSMAVIREMMD 524

Query: 392 C---TNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYE 447
           C    N   ++  + A   + K   A+ +  +M+   ++  + TY +L      +    +
Sbjct: 525 CGLTANSYIYTTLIDAYFKVGKTTEAVNLLQEMQDLGIKITVVTYGVLIDGLCKIGLVQQ 584

Query: 448 EGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPL 507
               F               M RN +Q + +    L+  L     + E    F +     
Sbjct: 585 AVRYFDH-------------MTRNGLQPNIMIYTALIDGLCKNDCLEEAKNLF-NEMLDK 630

Query: 508 GTPTYNTVLHSLVEAQESH----RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSA 563
           G      V  SL++    H     A+ +  +M   G+  +   Y  +I   S     + A
Sbjct: 631 GISPDKLVYTSLIDGNMKHGNPGEALSLRNRMVEIGMELDLCAYTSLIWGFSRYGQVQLA 690

Query: 564 SALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGI 610
            +L+  M+R G  P  +    L++   + GD +EAL L D ++  G+
Sbjct: 691 KSLLDEMLRKGIIPDQVLCICLLRKYYELGDINEALALHDDMARRGL 737



 Score = 48.1 bits (113), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 35/155 (22%), Positives = 67/155 (43%), Gaps = 4/155 (2%)

Query: 508 GTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALV 567
           G   ++T+ + LV+      A + F +M    + P   + N ++   S       A +  
Sbjct: 180 GFGVFDTLFNVLVDLGMLEEARQCFWKMNKFRVLPKVRSCNELLHRLSKSSKGGLALSFF 239

Query: 568 SMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEK 627
             MV  G  P   TY  +I  L   GD + A +L + +  +G+  D++ YN+++    + 
Sbjct: 240 KDMVVAGLSPSVFTYNMVIGCLAREGDLEAARSLFEEMKAKGLRPDIVTYNSLIDGYGKV 299

Query: 628 GRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNC 662
           G +     + E+M     +PD  T    ++  +NC
Sbjct: 300 GMLTGAVSVFEEMKDAGCEPDVIT----YNSLINC 330



 Score = 39.7 bits (91), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 54/260 (20%), Positives = 107/260 (41%), Gaps = 16/260 (6%)

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
           M+++ +  N   Y  ++ A CK G L EA N  +    R G+ P    Y S + A  K+ 
Sbjct: 347 MKQRGLQPNVVTYSTLIDAFCKAGMLLEA-NKFFVDMIRVGLQPNEFTYTSLIDANCKIG 405

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK-HYSLSIFSLR 231
            +  A      M    V  N VTYT LL        +    E++   +K  ++L+     
Sbjct: 406 DLNEAFKLESEMQQAGVNLNIVTYTALLDGLCEDGRMREAEELFGALLKAGWTLNQQIYT 465

Query: 232 KFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTS-EGRLRSSRLDIPIPLNALPVMK 290
                + + + ++ A + L+ M    +   L +  T   G  R + ++     +++ V++
Sbjct: 466 SLFHGYIKAKMMEKAMDILEEMNKKNLKPDLLLYGTKIWGLCRQNEIE-----DSMAVIR 520

Query: 291 VL--------RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDR 342
            +         + ++ +I A  +   +  A  L+ +MQ LG++ +  TY   I  +    
Sbjct: 521 EMMDCGLTANSYIYTTLIDAYFKVGKTTEAVNLLQEMQDLGIKITVVTYGVLIDGLCKIG 580

Query: 343 GLRNGMEVLKIMQQNNLKPQ 362
            ++  +     M +N L+P 
Sbjct: 581 LVQQAVRYFDHMTRNGLQPN 600


>gi|297837161|ref|XP_002886462.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297332303|gb|EFH62721.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 550

 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 99/433 (22%), Positives = 179/433 (41%), Gaps = 27/433 (6%)

Query: 266 RTSEGRLRSSRLDIPIPL-----NALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQ 320
           R S+ RLR  +L   I L        P   ++   F+ ++ A  + +   +   L  +M+
Sbjct: 55  RLSKTRLRDIKLHDAINLFREMVKTRPFPSIV--DFNRLLSAIVKMKKYDVVISLGKKME 112

Query: 321 SLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELD 380
            LG++   +T++  I        +   + VL  M +   +P   TI +L     +   + 
Sbjct: 113 VLGIRNDLYTFNIVINCFCCCFQVSLALSVLGKMLKLGYEPDRVTIGSLVNGFCRRNRVS 172

Query: 381 LAEALLDQISRCTNPKPFSAFLAACDTMDKPER---AIKIFAKM-RQKLRPDIRTYELLF 436
            A +L+D++          A+ A  D++ K  R   A+  F ++ R+ +RP++ TY  L 
Sbjct: 173 DAVSLVDKMVEIGYRPDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTAL- 231

Query: 437 SLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIREL 496
                VN     G      D+A+ +     DM +  I  + I+   LL A    G + E 
Sbjct: 232 -----VNGLCNSGRWN---DAARLLR----DMIKRKITPNVITYSALLDAFVKNGKVLEA 279

Query: 497 IQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC 553
            + F +       P   TY+++++ L        A ++F  M + G  P+  +YN +I+ 
Sbjct: 280 KEIFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCFPDVVSYNTLING 339

Query: 554 CSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHD 613
               +  +    L   M + G    T+TY  LI+     GD D+A      +   G+  D
Sbjct: 340 FCKAKRVEDGMKLFRKMSQRGLVNNTVTYNTLIQGFFQVGDVDKAQEFFSQMDSFGVSPD 399

Query: 614 VLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           +  YN +L   C+ G ++    I E M ++++  D  T   V  G    G    A     
Sbjct: 400 IWTYNILLGGLCDNGLLEKALVIFEDMQKSEMDLDIVTYTTVIQGMCKTGKVEDAWGLFC 459

Query: 674 VLSMRMLCEEVST 686
            LS++ L  ++ T
Sbjct: 460 SLSLKGLKPDIVT 472



 Score = 80.1 bits (196), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 84/385 (21%), Positives = 155/385 (40%), Gaps = 52/385 (13%)

Query: 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
           R +   +++   R      A  L+ +M  +G +P    Y+  I ++   R + + ++  K
Sbjct: 155 RVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYRPDIVAYNAIIDSLCKTRRVNDALDFFK 214

Query: 353 IMQQNNLKPQDST-IATLSVECSKALELDLAEALLDQISRCTNPK--PFSAFLAACDTMD 409
            + +  ++P   T  A ++  C+     D A  L D I R   P    +SA L A     
Sbjct: 215 EIGRKGIRPNVVTYTALVNGLCNSGRWNDAARLLRDMIKRKITPNVITYSALLDAFVKNG 274

Query: 410 KPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
           K   A +IF +M R  + PDI TY  L                         IN + +  
Sbjct: 275 KVLEAKEIFEEMVRMSIDPDIVTYSSL-------------------------INGLCL-- 307

Query: 469 ARNNIQHSHISMKN-LLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHR 527
                 H  I   N +   + ++G   +++             +YNT+++   +A+    
Sbjct: 308 ------HDRIDEANQMFDLMVSKGCFPDVV-------------SYNTLINGFCKAKRVED 348

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
            M++F++M   G+  N  TYN +I     +     A    S M   G  P   TY  L+ 
Sbjct: 349 GMKLFRKMSQRGLVNNTVTYNTLIQGFFQVGDVDKAQEFFSQMDSFGVSPDIWTYNILLG 408

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
            L D G  ++AL + + +    +  D++ Y T+++  C+ G+++    +   +    ++P
Sbjct: 409 GLCDNGLLEKALVIFEDMQKSEMDLDIVTYTTVIQGMCKTGKVEDAWGLFCSLSLKGLKP 468

Query: 648 DPSTCHFVFSGYVNCGFHNSAMEAL 672
           D  T   + SG    G  +  +EAL
Sbjct: 469 DIVTYTTMMSGLCTKGLQHE-VEAL 492


>gi|224157081|ref|XP_002337799.1| predicted protein [Populus trichocarpa]
 gi|222869732|gb|EEF06863.1| predicted protein [Populus trichocarpa]
          Length = 367

 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 84/359 (23%), Positives = 142/359 (39%), Gaps = 24/359 (6%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A ++M  M   GL+PS  TY+  I  +           +L  M    L P  +T  TL V
Sbjct: 20  AFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLV 79

Query: 372 ECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRP 427
           E  +      A+ +  ++ R     +   FS+ +A        ++A+  F  M++  L P
Sbjct: 80  ESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLMAVFSRNRHLDQALVYFRDMKKFGLVP 139

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL 487
           D   Y +L      ++     GNM   +        I  +M         I+   +L  L
Sbjct: 140 DNVIYTVL------MHGYCRNGNMLEAL-------KIRDEMLEQGCVLDVIAYNTILNGL 186

Query: 488 GAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNA 544
             E M+ +  + F +       P   T+ T++H   +     +A+ +F  M    I P+ 
Sbjct: 187 CKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDI 246

Query: 545 ATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDL 604
             YN +ID    +   + AS L   M+    +P  +TY  LI      G   EA  L D+
Sbjct: 247 VAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDV 306

Query: 605 VSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
           +  +GI   ++  NT++K  C  G     +  + +M    V PD    H  ++  +N G
Sbjct: 307 MIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAPD----HISYNTLINDG 361



 Score = 69.3 bits (168), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 82/362 (22%), Positives = 153/362 (42%), Gaps = 22/362 (6%)

Query: 330 TYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTI-ATLSVECSKALELDLAEALLDQ 388
           TY+  I A   +  L    E++  M    LKP   T  A ++  C K         L++ 
Sbjct: 3   TYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEM 62

Query: 389 ISRCTNPKP--FSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAP 445
           ++   +P    ++  L      D    A +IF +M RQ + PD+ ++  L ++F   N  
Sbjct: 63  LNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLMAVFSR-NRH 121

Query: 446 YEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIR-ELIQYFCDSK 504
            ++  ++ +    K+   +  ++    + H +    N+L+AL     IR E+++  C   
Sbjct: 122 LDQALVYFR--DMKKFGLVPDNVIYTVLMHGYCRNGNMLEAL----KIRDEMLEQGC--- 172

Query: 505 TPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSAS 564
             L    YNT+L+ L + +    A ++F +M   G  P+  T+  +I           A 
Sbjct: 173 -VLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKAL 231

Query: 565 ALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLD-LVSLEGIPHDVLLYNTILKK 623
           +L   M +    P  + Y  LI      G+ ++A  L D ++S +  P+ +  Y  ++  
Sbjct: 232 SLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHIT-YGILINA 290

Query: 624 ACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEE 683
            C  G +     + + M +  ++P   TC+ V  GY   G  + A E L     RM+ + 
Sbjct: 291 YCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFLG----RMIAKG 346

Query: 684 VS 685
           V+
Sbjct: 347 VA 348



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 67/324 (20%), Positives = 129/324 (39%), Gaps = 26/324 (8%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y  ++ A C+ G LEEA  ++  + ++ G+ P L  YN+ +    K      A   L  M
Sbjct: 4   YNTLIGAYCREGLLEEAFEIMNSMADK-GLKPSLFTYNAIINGLCKKGRYARAKGILIEM 62

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSL-SIFSLRKFVWSFTRLRDL 243
            +  +  +  TY  LL  +  + N S   EI+ + ++   +  + S    +  F+R R L
Sbjct: 63  LNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLMAVFSRNRHL 122

Query: 244 KSAYETLQHMVALAMMGKLYI------------NRTSEGRLRSSRLDIPIPLNALPVMKV 291
             A    + M    ++    I            N     ++R   L+    L+ +     
Sbjct: 123 DQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVI----- 177

Query: 292 LRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVL 351
              +++ +++   + +    A++L  +M   G  P  +T+   I     D  +   + + 
Sbjct: 178 ---AYNTILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLF 234

Query: 352 KIMQQNNLKPQDSTIATLSVECSKALELDLAEALLD-QISRCTNPK--PFSAFLAACDTM 408
             M Q N+KP      TL     K  E++ A  L D  ISR   P    +   + A  ++
Sbjct: 235 GTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSV 294

Query: 409 DKPERAIKIFAKMRQK-LRPDIRT 431
                A +++  M +K ++P + T
Sbjct: 295 GHVSEAFRLWDVMIEKGIKPTLVT 318



 Score = 39.3 bits (90), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 31/132 (23%), Positives = 58/132 (43%), Gaps = 2/132 (1%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           +  ++   C+ G + +A +L   + +R  I P +  YN+ +    K+  M  A+   D M
Sbjct: 214 FTTLIHGHCQDGNMTKALSLFGTMTQR-NIKPDIVAYNTLIDGFCKVGEMEKASELWDGM 272

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYSLSIFSLRKFVWSFTRLRDL 243
            SR +  N +TY  L+       ++S    +W+  I K    ++ +    +  + R  D 
Sbjct: 273 ISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGDS 332

Query: 244 KSAYETLQHMVA 255
             A E L  M+A
Sbjct: 333 SKADEFLGRMIA 344


>gi|125541439|gb|EAY87834.1| hypothetical protein OsI_09254 [Oryza sativa Indica Group]
          Length = 502

 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 96/473 (20%), Positives = 182/473 (38%), Gaps = 73/473 (15%)

Query: 305 RTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDS 364
           R  +   AE +++    LGL P   TY+  + A     GL  G+ V+  M++  ++P   
Sbjct: 24  RGGSLAAAESVLVDAIRLGLPPDVVTYNTLLAAHCRAAGLEAGLAVMGRMREAGVEPDAV 83

Query: 365 TIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKM-RQ 423
           T                                +++ +A       P  A+ +F +M R 
Sbjct: 84  T--------------------------------YNSLIAGAARRGLPIHALDLFDEMLRA 111

Query: 424 KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNL 483
            + PD  +Y  L         P +   +F+             DMA   I     +   L
Sbjct: 112 GIAPDSWSYNPLMHCLFRSGHPEDAYRVFA-------------DMAEKGIAPCDTTYNTL 158

Query: 484 LKALGAEGMIR--------ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQM 535
           L     +GM R         + +Y   +  P+   TYNT+++ L  + +   A  + +++
Sbjct: 159 L-----DGMFRAGYAMNAYRMFRYLQRAGLPVSIVTYNTMINGLCSSGKVGYARMVLREL 213

Query: 536 KTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDF 595
                 PN  TY  ++ CC     F+        ++  G+      Y  +I  L+  G  
Sbjct: 214 GRTDHAPNIITYTAVMKCCFKYGRFEQGLDTFLSLLDRGYISDVYPYCTVISALVKKGRL 273

Query: 596 DEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFV 655
            EA N  DL+   G   D + YNT++   C++G++D    ++  M    ++ D  T   +
Sbjct: 274 GEANNYCDLMLQNGSRLDSVCYNTLIHMRCQEGKLDDAFELVSMMEDGGLESDEYTFAIL 333

Query: 656 FSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDFEDLILA----EDSEAESRILQ 711
            +G    G H  A E  Q+  M     E+  ++     +  L+ A    ++ +A  R+LQ
Sbjct: 334 VNGLCKMG-HIEAAEK-QLFYM-----EIKGMQSNVVAYNCLVDALCKFQEVDAAIRLLQ 386

Query: 712 FCEDSNENLAFTAALLQLRWCTIVGFPISWSLDRASGLEDSQTNSNSRKQEIA 764
            C    ++  +T+ +  L  C +  + ++    R    E +   +++++  IA
Sbjct: 387 -CMKLKDDFTYTSLVHGL--CRVGRYHMASKFLRICLREGNNVLASAKRAVIA 436



 Score = 46.6 bits (109), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 64/169 (37%)

Query: 507 LGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASAL 566
           L T   N  L +L        A  +       G+PP+  TYN ++         ++  A+
Sbjct: 10  LPTRLLNVCLAALCRGGSLAAAESVLVDAIRLGLPPDVVTYNTLLAAHCRAAGLEAGLAV 69

Query: 567 VSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE 626
           +  M   G  P  +TY +LI      G    AL+L D +   GI  D   YN ++     
Sbjct: 70  MGRMREAGVEPDAVTYNSLIAGAARRGLPIHALDLFDEMLRAGIAPDSWSYNPLMHCLFR 129

Query: 627 KGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
            G  +    +   M +  + P  +T + +  G    G+  +A    + L
Sbjct: 130 SGHPEDAYRVFADMAEKGIAPCDTTYNTLLDGMFRAGYAMNAYRMFRYL 178



 Score = 45.4 bits (106), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 65/381 (17%), Positives = 137/381 (35%), Gaps = 61/381 (16%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           WS++ ++H   R+ +   A ++   M   G+ P   TY+  +  +       N   + + 
Sbjct: 118 WSYNPLMHCLFRSGHPEDAYRVFADMAEKGIAPCDTTYNTLLDGMFRAGYAMNAYRMFRY 177

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMD 409
           +Q+  L     T  T+      + ++  A  +L ++ R T+  P    ++A +  C    
Sbjct: 178 LQRAGLPVSIVTYNTMINGLCSSGKVGYARMVLRELGR-TDHAPNIITYTAVMKCCFKYG 236

Query: 410 KPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
           + E+ +  F  +  +               G ++  Y    + S +    R+        
Sbjct: 237 RFEQGLDTFLSLLDR---------------GYISDVYPYCTVISALVKKGRLGEA----- 276

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCD----SKTPLGTPTYNTVLHSLVEAQES 525
            NN                           +CD    + + L +  YNT++H   +  + 
Sbjct: 277 -NN---------------------------YCDLMLQNGSRLDSVCYNTLIHMRCQEGKL 308

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
             A E+   M+  G+  +  T+ I+++    +   ++A   +  M   G     + Y  L
Sbjct: 309 DDAFELVSMMEDGGLESDEYTFAILVNGLCKMGHIEAAEKQLFYMEIKGMQSNVVAYNCL 368

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           +  L  + + D A+ LL  + L+    D   Y +++   C  GR  +    +    +   
Sbjct: 369 VDALCKFQEVDAAIRLLQCMKLK----DDFTYTSLVHGLCRVGRYHMASKFLRICLREGN 424

Query: 646 QPDPSTCHFVFSGYVNCGFHN 666
               S    V +G  + GF N
Sbjct: 425 NVLASAKRAVIAGLRSSGFKN 445


>gi|18391414|ref|NP_563911.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75167758|sp|Q9ASZ8.1|PPR37_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g12620
 gi|13605505|gb|AAK32746.1|AF361578_1 At1g12620/T12C24_25 [Arabidopsis thaliana]
 gi|24111307|gb|AAN46777.1| At1g12620/T12C24_25 [Arabidopsis thaliana]
 gi|332190781|gb|AEE28902.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 621

 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 81/391 (20%), Positives = 165/391 (42%), Gaps = 28/391 (7%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           ++ S +I+ C R +   LA   M ++  LG +P + T+   I  +  +  +   +E++  
Sbjct: 108 YTLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDR 167

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT---NPKPFSAFLAACDTMDK 410
           M +   KP   T+  L        ++  A  L+D++       N   +   L       +
Sbjct: 168 MVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQ 227

Query: 411 PERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
              A+++  KM + K++ D   Y ++        +     N+F++++    I   + D+ 
Sbjct: 228 TALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEME----IKGFKADI- 282

Query: 470 RNNIQHSHISMKNLLKALGAEG-------MIRELIQYFCDSKTPLGTPTYNTVLHSLVEA 522
                   I    L++     G       ++R++I+     K       ++ ++   V+ 
Sbjct: 283 --------IIYTTLIRGFCYAGRWDDGAKLLRDMIK----RKITPDVVAFSALIDCFVKE 330

Query: 523 QESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTY 582
            +   A E+ K+M   GI P+  TY  +ID          A+ ++ +MV  G  P   T+
Sbjct: 331 GKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTF 390

Query: 583 TALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642
             LI         D+ L L   +SL G+  D + YNT+++  CE G+++V + + ++M  
Sbjct: 391 NILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVS 450

Query: 643 NKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
            +V+PD  +   +  G  + G    A+E  +
Sbjct: 451 RRVRPDIVSYKILLDGLCDNGEPEKALEIFE 481



 Score = 73.2 bits (178), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 113/498 (22%), Positives = 184/498 (36%), Gaps = 61/498 (12%)

Query: 128 MMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSR 187
           ++  LC  G + EA  L+  + E  G  P L   N+ +        +  A L +D M   
Sbjct: 148 LINGLCLEGRVSEALELVDRMVE-MGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVET 206

Query: 188 MVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAY 247
               NEVTY  +LK+       +   E+              LRK      +L  +K  Y
Sbjct: 207 GFQPNEVTYGPVLKVMCKSGQTALAMEL--------------LRKMEERKIKLDAVK--Y 250

Query: 248 ETLQHMVALAMMGKL--YINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHA--- 302
             +  +  L   G L    N  +E  ++  + DI I              ++ +I     
Sbjct: 251 SII--IDGLCKDGSLDNAFNLFNEMEIKGFKADIII--------------YTTLIRGFCY 294

Query: 303 CGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQ 362
            GR  +     +L+  M    + P    +   I   V +  LR   E+ K M Q  + P 
Sbjct: 295 AGRWDDGA---KLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPD 351

Query: 363 DSTIATLSVECSKALELDLAEALLD-QISRCTNP--KPFSAFLAACDTMDKPERAIKIFA 419
             T  +L     K  +LD A  +LD  +S+   P  + F+  +      +  +  +++F 
Sbjct: 352 TVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFR 411

Query: 420 KMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHI 478
           KM  + +  D  TY  L   F  +        +F +             M    ++   +
Sbjct: 412 KMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQE-------------MVSRRVRPDIV 458

Query: 479 SMKNLLKALGAEGMIRELIQYFCD---SKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQM 535
           S K LL  L   G   + ++ F     SK  L    YN ++H +  A +   A ++F  +
Sbjct: 459 SYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSL 518

Query: 536 KTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDF 595
              G+ P+  TYNIMI           A  L   M  DG  P   TY  LI+  L  GD 
Sbjct: 519 PLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDA 578

Query: 596 DEALNLLDLVSLEGIPHD 613
            ++  L++ +   G   D
Sbjct: 579 TKSAKLIEEIKRCGFSVD 596



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 82/378 (21%), Positives = 158/378 (41%), Gaps = 24/378 (6%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           ++  V+    ++  + LA +L+ +M+   ++  +  Y   I  +  D  L N   +   M
Sbjct: 214 TYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEM 273

Query: 355 QQNNLKPQDSTIATLSVE--CSKALELDLAEALLDQISRCTNPK--PFSAFLAACDTMDK 410
           +    K  D  I T  +   C      D A+ L D I R   P    FSA +       K
Sbjct: 274 EIKGFKA-DIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGK 332

Query: 411 PERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
              A ++  +M Q+ + PD  TY  L   F   N          Q+D A  +  +++ ++
Sbjct: 333 LREAEELHKEMIQRGISPDTVTYTSLIDGFCKEN----------QLDKANHM--LDLMVS 380

Query: 470 RN---NIQHSHISMKNLLKA-LGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQES 525
           +    NI+  +I +    KA L  +G+  EL +          T TYNT++    E  + 
Sbjct: 381 KGCGPNIRTFNILINGYCKANLIDDGL--ELFRKMSLRGVVADTVTYNTLIQGFCELGKL 438

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
             A E+F++M +  + P+  +Y I++D        + A  +   + +         Y  +
Sbjct: 439 EVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNII 498

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           I  + +    D+A +L   + L+G+  DV  YN ++   C+KG +   + +  +M ++  
Sbjct: 499 IHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGH 558

Query: 646 QPDPSTCHFVFSGYVNCG 663
            P+  T + +   ++  G
Sbjct: 559 SPNGCTYNILIRAHLGEG 576



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 82/169 (48%), Gaps = 4/169 (2%)

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSM-- 569
           ++ +   +   ++    +++ KQM+  GI  N  T +IMI+CC   RC K + A  +M  
Sbjct: 75  FSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMINCCC--RCRKLSLAFSAMGK 132

Query: 570 MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
           +++ G+ P T+T++ LI  L   G   EAL L+D +   G    ++  N ++   C  G+
Sbjct: 133 IIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGK 192

Query: 630 IDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678
           +     +I++M +   QP+  T   V       G    AME L+ +  R
Sbjct: 193 VSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEER 241



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/222 (18%), Positives = 92/222 (41%), Gaps = 3/222 (1%)

Query: 468 MARNNIQHSHISMKNLLKAL---GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQE 524
           M     Q + ++   +LK +   G   +  EL++   + K  L    Y+ ++  L +   
Sbjct: 203 MVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGS 262

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
              A  +F +M+  G   +   Y  +I        +   + L+  M++    P  + ++A
Sbjct: 263 LDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSA 322

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
           LI   +  G   EA  L   +   GI  D + Y +++   C++ ++D    +++ M    
Sbjct: 323 LIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKG 382

Query: 645 VQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
             P+  T + + +GY      +  +E  + +S+R +  +  T
Sbjct: 383 CGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVT 424



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 103/508 (20%), Positives = 203/508 (39%), Gaps = 79/508 (15%)

Query: 59  IVDALC-RGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKE 117
           +V+ LC  G+ S A  L+  +           +  +L    +S      ME  R MEE++
Sbjct: 183 LVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERK 242

Query: 118 IGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFL-GACAKLHSMVH 176
           I L+   Y +++  LCK G L+ A NL   + E  G    + +Y + + G C        
Sbjct: 243 IKLDAVKYSIIIDGLCKDGSLDNAFNLFNEM-EIKGFKADIIIYTTLIRGFCYAGRWDDG 301

Query: 177 ANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH-YSLSIFSLRKFVW 235
           A L  D++  R +  + V ++ L+   V +  L    E+ ++ I+   S    +    + 
Sbjct: 302 AKLLRDMI-KRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLID 360

Query: 236 SFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWS 295
            F +   L  A     HM                       LD+ +     P ++    +
Sbjct: 361 GFCKENQLDKA----NHM-----------------------LDLMVSKGCGPNIR----T 389

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           F+ +I+   +        +L  +M   G+   + TY+  I+       L    E+ + M 
Sbjct: 390 FNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMV 449

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAI 415
              ++P    I +  +             LLD +               CD   +PE+A+
Sbjct: 450 SRRVRPD---IVSYKI-------------LLDGL---------------CDN-GEPEKAL 477

Query: 416 KIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQ 474
           +IF K+ + K+  DI  Y ++     N +   +  ++F  +     +  ++ D+   NI 
Sbjct: 478 EIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLP----LKGVKPDVKTYNIM 533

Query: 475 HSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQ 534
              +  K  L    A+ + R++ +   D  +P G  TYN ++ + +   ++ ++ ++ ++
Sbjct: 534 IGGLCKKGSLSE--ADLLFRKMEE---DGHSPNGC-TYNILIRAHLGEGDATKSAKLIEE 587

Query: 535 MKTCGIPPNAATYNIMIDCCSIIRCFKS 562
           +K CG   +A+T  +++D  S  R  KS
Sbjct: 588 IKRCGFSVDASTVKMVVDMLSDGRLKKS 615


>gi|168047804|ref|XP_001776359.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672319|gb|EDQ58858.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 499

 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 79/366 (21%), Positives = 148/366 (40%), Gaps = 20/366 (5%)

Query: 327 SSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALL 386
           ++  Y+  I A V     +  + V ++M Q+ L+P   T   L     KA  +D    L 
Sbjct: 88  TASAYNSLIDAFVKAGYTQKALAVYRVMGQSGLRPDTYTFNVLMNAFKKAKRVDSVWKLF 147

Query: 387 DQISR--CT-NPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNV 442
           +++    C+ N   +S  + A       E+A+K+F  M+ +  RP+I TY  +    G  
Sbjct: 148 EEMQNQNCSPNVITYSILIDAVCKCGGVEKALKVFLDMKSRGCRPNIFTYTSMIDGLGKS 207

Query: 443 NAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCD 502
                       VD A  +     +M    +  + +   +L+  LG  G      + F +
Sbjct: 208 ----------GHVDKAFFLFE---EMTSEGLVATRVVYNSLIHGLGRSGRADAAAKLFRE 254

Query: 503 SKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRC 559
             +    P   T+ ++++ L  A  +  A  IF++ +  G   +   YN++ID     + 
Sbjct: 255 MLSKGLQPDHVTFTSLVYGLGVAGRASEARRIFQEARDVGCALDVNLYNVLIDTLCKSKR 314

Query: 560 FKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNT 619
              A  +   +  DG  P   T+ AL+  L   G   +A  LL  +   G   DV +YNT
Sbjct: 315 LDEAWEIFGELEEDGLVPDVYTFNALMDGLCKSGRIHDAFILLGDMKRAGCTPDVTVYNT 374

Query: 620 ILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRM 679
           ++    + GR++    ++ +M     +PD  T + +       G    A+   + +S + 
Sbjct: 375 LIDGLRKSGRVEEAGQLLLEMQSLGYEPDVVTYNTLIDESCKGGRIEDALRLFEEISAKG 434

Query: 680 LCEEVS 685
               V+
Sbjct: 435 FANTVT 440



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 89/384 (23%), Positives = 160/384 (41%), Gaps = 21/384 (5%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           ++F+ +++A  + +      +L  +MQ+    P+  TY   I A+    G+   ++V   
Sbjct: 125 YTFNVLMNAFKKAKRVDSVWKLFEEMQNQNCSPNVITYSILIDAVCKCGGVEKALKVFLD 184

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDK 410
           M+    +P   T  ++     K+  +D A  L ++++          +++ +       +
Sbjct: 185 MKSRGCRPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEGLVATRVVYNSLIHGLGRSGR 244

Query: 411 PERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRIN-AIEMDM 468
            + A K+F +M  K L+PD  T+  L    G      E   +F +   A+ +  A+++++
Sbjct: 245 ADAAAKLFREMLSKGLQPDHVTFTSLVYGLGVAGRASEARRIFQE---ARDVGCALDVNL 301

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRA 528
             N +  +    K L +A    G + E      D   P    T+N ++  L ++   H A
Sbjct: 302 -YNVLIDTLCKSKRLDEAWEIFGELEE------DGLVP-DVYTFNALMDGLCKSGRIHDA 353

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
             +   MK  G  P+   YN +ID        + A  L+  M   G+ P  +TY  LI  
Sbjct: 354 FILLGDMKRAGCTPDVTVYNTLIDGLRKSGRVEEAGQLLLEMQSLGYEPDVVTYNTLIDE 413

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV--- 645
               G  ++AL L + +S +G  + V  YNTIL   C  GR+D    +   M Q  V   
Sbjct: 414 SCKGGRIEDALRLFEEISAKGFANTV-TYNTILNGLCMAGRVDEAYKLFNGMKQETVDGV 472

Query: 646 -QPDPSTCHFVFSGYVNCGFHNSA 668
             PD  T   + +G    G    A
Sbjct: 473 IDPDFVTYTTLLNGARQAGLSELA 496


>gi|224123734|ref|XP_002330195.1| predicted protein [Populus trichocarpa]
 gi|222871651|gb|EEF08782.1| predicted protein [Populus trichocarpa]
          Length = 529

 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 125/292 (42%), Gaps = 49/292 (16%)

Query: 382 AEALLDQI---SRCTNPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFS 437
           A+A+L ++     C N   ++  +      +    A+++F +M RQ LRP++ TY +L  
Sbjct: 212 ADAILKEMVAKGICPNEVTYNILIDGFCKDENVSGAMRVFGEMQRQGLRPNVVTYNIL-- 269

Query: 438 LFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELI 497
               +N    +G +   V  A R   +  D+  N + H+                   LI
Sbjct: 270 ----INGLCSDGKVDEAV--ALRDQMVSSDLEPNVVTHNV------------------LI 305

Query: 498 QYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSII 557
             FC +KT                    + A+ +F  M+  G+ PNA TY  +ID     
Sbjct: 306 NGFCKNKT-------------------VNEAINLFNDMEKQGVDPNAMTYTTLIDAYCKD 346

Query: 558 RCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLY 617
              + A AL +MM+  G +P+  TY  LI  L   GD   A +L++ +  + +  DV+ Y
Sbjct: 347 GRMEDAFALYNMMIDRGIFPEVSTYNCLIAGLCRKGDVKAARSLMNEMVSKKLSADVVTY 406

Query: 618 NTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAM 669
           N ++   C+KG       ++++M +  + P   T + +  GY   G   +A+
Sbjct: 407 NILIDSLCKKGESRKAVKLLDEMFEKGLNPSHVTYNTLMDGYCREGNLRAAL 458



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 75/364 (20%), Positives = 139/364 (38%), Gaps = 47/364 (12%)

Query: 304 GRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQD 363
           GR      A+ ++ +M + G+ P+  TY+  I     D  +   M V   MQ+  L+P  
Sbjct: 204 GRIGKMYKADAILKEMVAKGICPNEVTYNILIDGFCKDENVSGAMRVFGEMQRQGLRPNV 263

Query: 364 STIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ 423
            T   L        ++D A AL DQ+                               +  
Sbjct: 264 VTYNILINGLCSDGKVDEAVALRDQM-------------------------------VSS 292

Query: 424 KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNL 483
            L P++ T+ +L + F       E  N+F+             DM +  +  + ++   L
Sbjct: 293 DLEPNVVTHNVLINGFCKNKTVNEAINLFN-------------DMEKQGVDPNAMTYTTL 339

Query: 484 LKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGI 540
           + A   +G + +   L     D        TYN ++  L    +   A  +  +M +  +
Sbjct: 340 IDAYCKDGRMEDAFALYNMMIDRGIFPEVSTYNCLIAGLCRKGDVKAARSLMNEMVSKKL 399

Query: 541 PPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALN 600
             +  TYNI+ID        + A  L+  M   G  P  +TY  L+      G+   AL 
Sbjct: 400 SADVVTYNILIDSLCKKGESRKAVKLLDEMFEKGLNPSHVTYNTLMDGYCREGNLRAALI 459

Query: 601 LLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYV 660
           +   +  +G   +V+ +N ++K  C KGR++    ++ +M +  + P+ +T   +    +
Sbjct: 460 VRTRMERKGKQANVVTHNVLIKGFCLKGRLEDANGLLNEMLERGLVPNRTTYEIIKEEMM 519

Query: 661 NCGF 664
             GF
Sbjct: 520 EKGF 523



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 50/217 (23%), Positives = 98/217 (45%), Gaps = 6/217 (2%)

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELI-QYFCDSKTPLGTPTYNTVLHSLVEAQESHRAM 529
           N +   +  M  + K   A+ +++E++ +  C ++      TYN ++    + +    AM
Sbjct: 194 NTLIDGYCKMGRIGKMYKADAILKEMVAKGICPNEV-----TYNILIDGFCKDENVSGAM 248

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
            +F +M+  G+ PN  TYNI+I+          A AL   MV     P  +T+  LI   
Sbjct: 249 RVFGEMQRQGLRPNVVTYNILINGLCSDGKVDEAVALRDQMVSSDLEPNVVTHNVLINGF 308

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649
                 +EA+NL + +  +G+  + + Y T++   C+ GR++    +   M    + P+ 
Sbjct: 309 CKNKTVNEAINLFNDMEKQGVDPNAMTYTTLIDAYCKDGRMEDAFALYNMMIDRGIFPEV 368

Query: 650 STCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           ST + + +G    G   +A   +  +  + L  +V T
Sbjct: 369 STYNCLIAGLCRKGDVKAARSLMNEMVSKKLSADVVT 405



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 73/163 (44%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TYN +++ L    +   A+ +  QM +  + PN  T+N++I+     +    A  L + M
Sbjct: 265 TYNILINGLCSDGKVDEAVALRDQMVSSDLEPNVVTHNVLINGFCKNKTVNEAINLFNDM 324

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
            + G  P  MTYT LI      G  ++A  L +++   GI  +V  YN ++   C KG +
Sbjct: 325 EKQGVDPNAMTYTTLIDAYCKDGRMEDAFALYNMMIDRGIFPEVSTYNCLIAGLCRKGDV 384

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
                ++ +M   K+  D  T + +       G    A++ L 
Sbjct: 385 KAARSLMNEMVSKKLSADVVTYNILIDSLCKKGESRKAVKLLD 427



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 88/488 (18%), Positives = 186/488 (38%), Gaps = 110/488 (22%)

Query: 109 TWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFL-GA 167
            +R M +++I LN   + +++  LCK G L  A ++I  + + +G+ P +  YN+ + G 
Sbjct: 142 VYREMIKRKIELNVISFNIVVNGLCKVGKLNRAGDVIEDM-KVWGVSPNVITYNTLIDGY 200

Query: 168 C--AKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSL 225
           C   ++  M  A+  L  M ++ +  NEVTY  L+      +N+S    ++ +  +    
Sbjct: 201 CKMGRIGKMYKADAILKEMVAKGICPNEVTYNILIDGFCKDENVSGAMRVFGEMQRQ--- 257

Query: 226 SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNA 285
               LR  V ++  L +   +   +   VAL              ++ SS L+  +  + 
Sbjct: 258 ---GLRPNVVTYNILINGLCSDGKVDEAVAL------------RDQMVSSDLEPNVVTHN 302

Query: 286 LPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLR 345
           +            +I+   + +    A  L   M+  G+ P++ TY   I A   D  + 
Sbjct: 303 V------------LINGFCKNKTVNEAINLFNDMEKQGVDPNAMTYTTLIDAYCKDGRME 350

Query: 346 NGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAAC 405
           +   +  +M    + P+ ST   L     +  ++  A +L++++                
Sbjct: 351 DAFALYNMMIDRGIFPEVSTYNCLIAGLCRKGDVKAARSLMNEM---------------- 394

Query: 406 DTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIE 465
                          + +KL  D+ TY +L              ++  + +S K +  ++
Sbjct: 395 ---------------VSKKLSADVVTYNILID------------SLCKKGESRKAVKLLD 427

Query: 466 MDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQES 525
            +M    +  SH++   L+     EG +R                               
Sbjct: 428 -EMFEKGLNPSHVTYNTLMDGYCREGNLRA------------------------------ 456

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
             A+ +  +M+  G   N  T+N++I    +    + A+ L++ M+  G  P   TY  +
Sbjct: 457 --ALIVRTRMERKGKQANVVTHNVLIKGFCLKGRLEDANGLLNEMLERGLVPNRTTYEII 514

Query: 586 IKILLDYG 593
            + +++ G
Sbjct: 515 KEEMMEKG 522


>gi|357115347|ref|XP_003559450.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Brachypodium distachyon]
          Length = 1102

 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 143/705 (20%), Positives = 273/705 (38%), Gaps = 97/705 (13%)

Query: 55  TQMQIVDALCRGER-SRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMM 113
           T   ++  LC   R S A  +   +  +        +  +L+ C  + D   V+E W  M
Sbjct: 288 TNTVLIQILCDAGRVSDAKDVFWKMKASDQKPDRVTYITLLDKCGDNGDSRSVIEIWNAM 347

Query: 114 EEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHS 173
           +      N   Y  ++ ALC+ G ++EAS++   + ++ GI P    YNS +    K   
Sbjct: 348 KADGYNDNVVAYTAVVDALCQVGRVDEASDVFDQMKQK-GIEPQQYSYNSLISGFLKADR 406

Query: 174 MVHANLCLDLMDSRMV-GKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSL------- 225
           + HA   L+L +   + G     YT +L +  + K+  ++  I     K Y L       
Sbjct: 407 LNHA---LELFNHMNIHGPTPNGYTYVLFINYYGKSGESLKAI-----KRYELMKSKGIV 458

Query: 226 -SIFSLRKFVWSFT---RLRDLKSAYETLQHM------VALAMMGKLYINRTSEGRLRSS 275
             + +    ++S     RL   K  +  L+ +      +   MM K   ++ S       
Sbjct: 459 PDVVAGNAVLYSLAKSGRLGMAKRVFHELKSIGVCPDNITYTMMIKC-CSKASNADEAMK 517

Query: 276 RLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFI 335
                I    +P +  +  S  D ++  GR      A ++  +++ + L P+  TY+  +
Sbjct: 518 VFSEMIETRCVPDVLAVN-SLIDTLYKAGRGNE---AWKIFHELKEMNLDPTDCTYNTLL 573

Query: 336 RAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNP 395
             +  +  ++  M +L+ M  N+  P   T  T+     K  E++ A  +L  ++     
Sbjct: 574 AGLGREGKVKEVMHLLEEMNSNSYPPNLITYNTVLDCLCKNGEVNYALGMLYNMTMKGCM 633

Query: 396 KPFSAFLAACDTMDKPER---AIKIFAKMRQKLRPDIRTYELLFSLF---GNVNAPYEEG 449
              S++  A   + K +R   A +IF +M++ L PD  T   +   F   G +N      
Sbjct: 634 PDLSSYNTALHGLVKEDRLTEAFRIFCQMKKVLAPDYTTLCTILPSFVKNGLMNEALHTL 693

Query: 450 NMF-----SQVDSAKRINAIEMDMARNNIQHSHISMKN--LLKALGAEGMIRELIQYFCD 502
             +     S+ D +   + +E  + R  ++ S    +N  L + L  +  +  LI++ C 
Sbjct: 694 KEYILQPGSKADRSSFHSLMEGILKRAGMEKSIEFAENIALSRILLDDFFLSPLIRHLCK 753

Query: 503 SK----------------TPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAAT 546
           SK                  L T +YN ++  LV+      A  +F +MK  G  P+  T
Sbjct: 754 SKKALEAHELVKKFESLGVSLKTGSYNALICGLVDENLIDVAEGLFSEMKRLGCDPDEFT 813

Query: 547 YNIMID-------------------CCSIIRCFKSASALVSMMVR--------------- 572
           YN+++D                   C      + + + ++S +V+               
Sbjct: 814 YNLILDAMGKSMRIEDMLKVQKEMHCKGYESTYVTYNTIISGLVKSKMLYEAMDLYYKLM 873

Query: 573 -DGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
            +GF P   TY  L+  LL  G  ++A +L D +   G   +  +YN +L      G  +
Sbjct: 874 SEGFSPTPCTYGPLLDGLLKDGKIEDAEDLFDEMLDYGCKPNRAIYNILLNGYRLAGNTE 933

Query: 632 VIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
            +  + + M    + PD  +   +       G  N ++   + L+
Sbjct: 934 KVCELFQNMVDQGINPDIKSYTVLIGALCTAGRLNDSLSYFRQLT 978



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 104/466 (22%), Positives = 183/466 (39%), Gaps = 62/466 (13%)

Query: 220 IKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGK-LYINRT--SEGRLRSSR 276
           I H + S   + + + +  R+RD+   ++ +Q  +  A +G  L I R+   EG LRS+ 
Sbjct: 108 IVHTTESCNYMLELMRAHGRVRDMAQVFDLMQRQIVKANVGTFLTIFRSLGMEGGLRSA- 166

Query: 277 LDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIR 336
              P+   ALP+MK                                G+  +S+TY+G I 
Sbjct: 167 ---PV---ALPMMK------------------------------EAGIVLNSYTYNGLIY 190

Query: 337 AIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPK 396
            +V     R  MEV K+M  + + P   T + L +   K     +   L +       P 
Sbjct: 191 FLVKSGYDREAMEVYKVMATDGIVPSVRTYSVLMLAFGKRDVETVVWLLREMEDHGVKPN 250

Query: 397 PFSAFLA--ACDTMDKPERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFS 453
            +S  +         + E A KI  KM  +  +PD+ T  +L  +  +     +  ++F 
Sbjct: 251 VYSYTICIRVLGQAGRFEEAYKILQKMEDEGCKPDVVTNTVLIQILCDAGRVSDAKDVFW 310

Query: 454 QVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPL---GTP 510
           ++ ++ +             +   ++   LL   G  G  R +I+ +   K         
Sbjct: 311 KMKASDQ-------------KPDRVTYITLLDKCGDNGDSRSVIEIWNAMKADGYNDNVV 357

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
            Y  V+ +L +      A ++F QMK  GI P   +YN +I           A  L + M
Sbjct: 358 AYTAVVDALCQVGRVDEASDVFDQMKQKGIEPQQYSYNSLISGFLKADRLNHALELFNHM 417

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
              G  P   TY   I      G+  +A+   +L+  +GI  DV+  N +L    + GR+
Sbjct: 418 NIHGPTPNGYTYVLFINYYGKSGESLKAIKRYELMKSKGIVPDVVAGNAVLYSLAKSGRL 477

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
            + + +  ++    V PD  T   +      C   ++A EA++V S
Sbjct: 478 GMAKRVFHELKSIGVCPDNITYTMMIK---CCSKASNADEAMKVFS 520



 Score = 76.6 bits (187), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 85/402 (21%), Positives = 173/402 (43%), Gaps = 24/402 (5%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           +S++  I   G+      A +++ +M+  G +P   T    I+ +     + +  +V   
Sbjct: 252 YSYTICIRVLGQAGRFEEAYKILQKMEDEGCKPDVVTNTVLIQILCDAGRVSDAKDVFWK 311

Query: 354 MQQNNLKPQDSTIATLSVECSKALE----LDLAEALLDQISRCTNPKPFSAFLAACDTMD 409
           M+ ++ KP   T  TL  +C    +    +++  A+        N   ++A + A   + 
Sbjct: 312 MKASDQKPDRVTYITLLDKCGDNGDSRSVIEIWNAM-KADGYNDNVVAYTAVVDALCQVG 370

Query: 410 KPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVD-SAKRINAIEMD 467
           + + A  +F +M+QK + P   +Y  L S F   +       +F+ ++      N     
Sbjct: 371 RVDEASDVFDQMKQKGIEPQQYSYNSLISGFLKADRLNHALELFNHMNIHGPTPNGYTYV 430

Query: 468 MARNNIQHSHISMKNL--LKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQES 525
           +  N    S  S+K +   + + ++G++ +++               N VL+SL ++   
Sbjct: 431 LFINYYGKSGESLKAIKRYELMKSKGIVPDVV-------------AGNAVLYSLAKSGRL 477

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
             A  +F ++K+ G+ P+  TY +MI CCS       A  + S M+     P  +   +L
Sbjct: 478 GMAKRVFHELKSIGVCPDNITYTMMIKCCSKASNADEAMKVFSEMIETRCVPDVLAVNSL 537

Query: 586 IKILLDYGDFDEALNLL-DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
           I  L   G  +EA  +  +L  +   P D   YNT+L     +G++  +  ++E+M+ N 
Sbjct: 538 IDTLYKAGRGNEAWKIFHELKEMNLDPTDC-TYNTLLAGLGREGKVKEVMHLLEEMNSNS 596

Query: 645 VQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
             P+  T + V       G  N A+  L  ++M+    ++S+
Sbjct: 597 YPPNLITYNTVLDCLCKNGEVNYALGMLYNMTMKGCMPDLSS 638



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 66/304 (21%), Positives = 126/304 (41%), Gaps = 20/304 (6%)

Query: 294  WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
            ++++ ++ A G++       ++  +M   G + +  TY+  I  +V  + L   M++   
Sbjct: 812  FTYNLILDAMGKSMRIEDMLKVQKEMHCKGYESTYVTYNTIISGLVKSKMLYEAMDLYYK 871

Query: 354  MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI--SRCT-NPKPFSAFLAACDTMDK 410
            +      P   T   L     K  +++ AE L D++    C  N   ++  L        
Sbjct: 872  LMSEGFSPTPCTYGPLLDGLLKDGKIEDAEDLFDEMLDYGCKPNRAIYNILLNGYRLAGN 931

Query: 411  PERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
             E+  ++F  M  Q + PDI++Y +L           +  + F Q+        +E D+ 
Sbjct: 932  TEKVCELFQNMVDQGINPDIKSYTVLIGALCTAGRLNDSLSYFRQLTEL----GLEPDLI 987

Query: 470  RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESH 526
              N+         L+  LG  G + E +  F D +     P   TYN+++  L +  ++ 
Sbjct: 988  TYNL---------LIHGLGRSGRLEEAVSLFNDMEKSGIAPNLYTYNSLILYLGKEGKAA 1038

Query: 527  RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
             A ++++++   G  PN  TYN +I   S+     +A A    M+  G  P + TY  L 
Sbjct: 1039 EAGKMYEELLKNGWKPNVFTYNALIGGYSVSGSTDNAFASYGQMIVGGCPPNSSTYMQLP 1098

Query: 587  KILL 590
              LL
Sbjct: 1099 NQLL 1102



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 73/318 (22%), Positives = 127/318 (39%), Gaps = 28/318 (8%)

Query: 311  LAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLS 370
            +AE L  +M+ LG  P   TY+  + A+     +    ++LK+ ++ + K  +ST  T +
Sbjct: 794  VAEGLFSEMKRLGCDPDEFTYNLILDAMGKSMRIE---DMLKVQKEMHCKGYESTYVTYN 850

Query: 371  VECSKALELDLAEALLDQ----ISRCTNPKP--FSAFLAACDTMDKPERAIKIFAKMRQ- 423
               S  ++  +    +D     +S   +P P  +   L       K E A  +F +M   
Sbjct: 851  TIISGLVKSKMLYEAMDLYYKLMSEGFSPTPCTYGPLLDGLLKDGKIEDAEDLFDEMLDY 910

Query: 424  KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNL 483
              +P+   Y +L              N +    + +++  +  +M    I     S   L
Sbjct: 911  GCKPNRAIYNILL-------------NGYRLAGNTEKVCELFQNMVDQGINPDIKSYTVL 957

Query: 484  LKALGAEGMIRELIQYFCDSKTPLGTP----TYNTVLHSLVEAQESHRAMEIFKQMKTCG 539
            + AL   G + + + YF    T LG      TYN ++H L  +     A+ +F  M+  G
Sbjct: 958  IGALCTAGRLNDSLSYF-RQLTELGLEPDLITYNLLIHGLGRSGRLEEAVSLFNDMEKSG 1016

Query: 540  IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEAL 599
            I PN  TYN +I           A  +   ++++G+ P   TY ALI      G  D A 
Sbjct: 1017 IAPNLYTYNSLILYLGKEGKAAEAGKMYEELLKNGWKPNVFTYNALIGGYSVSGSTDNAF 1076

Query: 600  NLLDLVSLEGIPHDVLLY 617
                 + + G P +   Y
Sbjct: 1077 ASYGQMIVGGCPPNSSTY 1094



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 68/357 (19%), Positives = 144/357 (40%), Gaps = 36/357 (10%)

Query: 309  SGLAEQLMLQMQSLGLQPSSH----TYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDS 364
            +GL  + +  ++   LQP S     ++   +  I+   G+   +E  + +  + +   D 
Sbjct: 683  NGLMNEALHTLKEYILQPGSKADRSSFHSLMEGILKRAGMEKSIEFAENIALSRILLDDF 742

Query: 365  TIATLS---VECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKM 421
             ++ L     +  KALE        + +        ++A +      +  + A  +F++M
Sbjct: 743  FLSPLIRHLCKSKKALEAHELVKKFESLGVSLKTGSYNALICGLVDENLIDVAEGLFSEM 802

Query: 422  RQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRIN---AIEMDMARNNIQHSH 477
            ++    PD  TY L+    G                 + RI     ++ +M     + ++
Sbjct: 803  KRLGCDPDEFTYNLILDAMGK----------------SMRIEDMLKVQKEMHCKGYESTY 846

Query: 478  ISMKNLLKALGAEGMIRELIQYFCD------SKTPLGTPTYNTVLHSLVEAQESHRAMEI 531
            ++   ++  L    M+ E +  +        S TP    TY  +L  L++  +   A ++
Sbjct: 847  VTYNTIISGLVKSKMLYEAMDLYYKLMSEGFSPTPC---TYGPLLDGLLKDGKIEDAEDL 903

Query: 532  FKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLD 591
            F +M   G  PN A YNI+++   +    +    L   MV  G  P   +YT LI  L  
Sbjct: 904  FDEMLDYGCKPNRAIYNILLNGYRLAGNTEKVCELFQNMVDQGINPDIKSYTVLIGALCT 963

Query: 592  YGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
             G  +++L+    ++  G+  D++ YN ++      GR++    +   M ++ + P+
Sbjct: 964  AGRLNDSLSYFRQLTELGLEPDLITYNLLIHGLGRSGRLEEAVSLFNDMEKSGIAPN 1020



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 85/181 (46%), Gaps = 6/181 (3%)

Query: 489  AEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYN 548
            AE +  E++ Y C     +    YN +L+    A  + +  E+F+ M   GI P+  +Y 
Sbjct: 900  AEDLFDEMLDYGCKPNRAI----YNILLNGYRLAGNTEKVCELFQNMVDQGINPDIKSYT 955

Query: 549  IMIDC-CSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSL 607
            ++I   C+  R   S S     +   G  P  +TY  LI  L   G  +EA++L + +  
Sbjct: 956  VLIGALCTAGRLNDSLSYF-RQLTELGLEPDLITYNLLIHGLGRSGRLEEAVSLFNDMEK 1014

Query: 608  EGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNS 667
             GI  ++  YN+++    ++G+      + E++ +N  +P+  T + +  GY   G  ++
Sbjct: 1015 SGIAPNLYTYNSLILYLGKEGKAAEAGKMYEELLKNGWKPNVFTYNALIGGYSVSGSTDN 1074

Query: 668  A 668
            A
Sbjct: 1075 A 1075



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 82/397 (20%), Positives = 165/397 (41%), Gaps = 39/397 (9%)

Query: 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPS-SHTYDG--FIRAIVSDRG-LRNGM 348
           R    +V+H   R+  +  AE L L  +S+  QP   HT +   ++  ++   G +R+  
Sbjct: 75  RPGAQNVVHML-RSAAADPAEALQL-FKSVAQQPRIVHTTESCNYMLELMRAHGRVRDMA 132

Query: 349 EVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEA-----LLDQISRCTNPKPFSAFLA 403
           +V  +MQ+  +K    T   L++  S  +E  L  A     ++ +     N   ++  + 
Sbjct: 133 QVFDLMQRQIVKANVGTF--LTIFRSLGMEGGLRSAPVALPMMKEAGIVLNSYTYNGLIY 190

Query: 404 ACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRIN 462
                     A++++  M    + P +RTY +L   FG  +               + + 
Sbjct: 191 FLVKSGYDREAMEVYKVMATDGIVPSVRTYSVLMLAFGKRDV--------------ETVV 236

Query: 463 AIEMDMARNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSL 519
            +  +M  + ++ +  S    ++ LG  G   E   ++Q   D        T   ++  L
Sbjct: 237 WLLREMEDHGVKPNVYSYTICIRVLGQAGRFEEAYKILQKMEDEGCKPDVVTNTVLIQIL 296

Query: 520 VEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQT 579
            +A     A ++F +MK     P+  TY  ++D C      +S   + + M  DG+    
Sbjct: 297 CDAGRVSDAKDVFWKMKASDQKPDRVTYITLLDKCGDNGDSRSVIEIWNAMKADGYNDNV 356

Query: 580 MTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID-VIEFIIE 638
           + YTA++  L   G  DEA ++ D +  +GI      YN+++    +  R++  +E    
Sbjct: 357 VAYTAVVDALCQVGRVDEASDVFDQMKQKGIEPQQYSYNSLISGFLKADRLNHALELF-- 414

Query: 639 QMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
             H N   P P+   +V   ++N  ++  + E+L+ +
Sbjct: 415 -NHMNIHGPTPNGYTYVL--FIN--YYGKSGESLKAI 446



 Score = 52.4 bits (124), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 68/153 (44%)

Query: 511  TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
            TYNT++  LV+++  + AM+++ ++ + G  P   TY  ++D        + A  L   M
Sbjct: 848  TYNTIISGLVKSKMLYEAMDLYYKLMSEGFSPTPCTYGPLLDGLLKDGKIEDAEDLFDEM 907

Query: 571  VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
            +  G  P    Y  L+      G+ ++   L   +  +GI  D+  Y  ++   C  GR+
Sbjct: 908  LDYGCKPNRAIYNILLNGYRLAGNTEKVCELFQNMVDQGINPDIKSYTVLIGALCTAGRL 967

Query: 631  DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
            +       Q+ +  ++PD  T + +  G    G
Sbjct: 968  NDSLSYFRQLTELGLEPDLITYNLLIHGLGRSG 1000



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 88/447 (19%), Positives = 162/447 (36%), Gaps = 55/447 (12%)

Query: 111 RMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAK 170
           R ME+  +  N   Y + ++ L + G  EEA  ++  + E  G  P +      +     
Sbjct: 240 REMEDHGVKPNVYSYTICIRVLGQAGRFEEAYKILQKM-EDEGCKPDVVTNTVLIQILCD 298

Query: 171 LHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDY-IKHYSLSIFS 229
              +  A      M +     + VTY  LL       +  +V EIW       Y+ ++ +
Sbjct: 299 AGRVSDAKDVFWKMKASDQKPDRVTYITLLDKCGDNGDSRSVIEIWNAMKADGYNDNVVA 358

Query: 230 LRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLY-INRTSEGRLRSSRLDIPIPLNALPV 288
               V +  ++  +  A +    M    +  + Y  N    G L++ RL+          
Sbjct: 359 YTAVVDALCQVGRVDEASDVFDQMKQKGIEPQQYSYNSLISGFLKADRLN---------- 408

Query: 289 MKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGM 348
                       HA           +L   M   G  P+ +TY  FI            +
Sbjct: 409 ------------HAL----------ELFNHMNIHGPTPNGYTYVLFINYYGKSGESLKAI 446

Query: 349 EVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEAL---LDQISRCTNPKPFSAFLAAC 405
           +  ++M+   + P       +    +K+  L +A+ +   L  I  C +   ++  +  C
Sbjct: 447 KRYELMKSKGIVPDVVAGNAVLYSLAKSGRLGMAKRVFHELKSIGVCPDNITYTMMIKCC 506

Query: 406 DTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAI 464
                 + A+K+F++M   +  PD+     L           E   +F ++         
Sbjct: 507 SKASNADEAMKVFSEMIETRCVPDVLAVNSLIDTLYKAGRGNEAWKIFHELK-------- 558

Query: 465 EMDMARNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVE 521
           EM     N+  +  +   LL  LG EG ++E   L++    +  P    TYNTVL  L +
Sbjct: 559 EM-----NLDPTDCTYNTLLAGLGREGKVKEVMHLLEEMNSNSYPPNLITYNTVLDCLCK 613

Query: 522 AQESHRAMEIFKQMKTCGIPPNAATYN 548
             E + A+ +   M   G  P+ ++YN
Sbjct: 614 NGEVNYALGMLYNMTMKGCMPDLSSYN 640



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 64/157 (40%)

Query: 495  ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCC 554
            EL Q   D        +Y  ++ +L  A   + ++  F+Q+   G+ P+  TYN++I   
Sbjct: 937  ELFQNMVDQGINPDIKSYTVLIGALCTAGRLNDSLSYFRQLTELGLEPDLITYNLLIHGL 996

Query: 555  SIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDV 614
                  + A +L + M + G  P   TY +LI  L   G   EA  + + +   G   +V
Sbjct: 997  GRSGRLEEAVSLFNDMEKSGIAPNLYTYNSLILYLGKEGKAAEAGKMYEELLKNGWKPNV 1056

Query: 615  LLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
              YN ++      G  D       QM      P+ ST
Sbjct: 1057 FTYNALIGGYSVSGSTDNAFASYGQMIVGGCPPNSST 1093


>gi|357449185|ref|XP_003594869.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483917|gb|AES65120.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 545

 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 63/261 (24%), Positives = 115/261 (44%), Gaps = 16/261 (6%)

Query: 421 MRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISM 480
           + +++ PD+ TY  L S F  V      G +   VD   R       M  +NI  +  + 
Sbjct: 225 VSKRISPDVVTYSSLISGFCVV------GKLKYAVDLFNR-------MISDNINPNVYTF 271

Query: 481 KNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKT 537
             L+     EG +RE   ++         L   TYN+++      ++ ++A  +F  M  
Sbjct: 272 SILIDGFCKEGKVREAKNVLAVMMKKNVKLDVVTYNSLMDGYCLVKQVNKAKSLFNVMAQ 331

Query: 538 CGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDE 597
            G+ P+  +Y+IMI+    I+    A  L   M     +P  +TY +L+  L   G    
Sbjct: 332 RGVTPDVWSYSIMINGFCKIKMVDEAMKLFEEMHCKQIFPNVVTYNSLVDGLCKSGRTSC 391

Query: 598 ALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFS 657
           AL L+D +   G P +++ YN+IL   C+   +D    ++ ++ +  +QPD  T   + +
Sbjct: 392 ALELVDEMHDRGQPSNIITYNSILDAICKNNHVDKAIVLLTKIKEKGIQPDIFTYTVLIN 451

Query: 658 GYVNCGFHNSAMEALQVLSMR 678
           G    G  + A +  + L ++
Sbjct: 452 GLCKVGRLDDAQKVFEDLLVK 472



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 81/365 (22%), Positives = 152/365 (41%), Gaps = 22/365 (6%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           S+  +I+   R   +  A QL+ ++    ++P+   Y   I ++  D+ + +  ++   M
Sbjct: 165 SYGTLINGLCRVGETKAAVQLLRRVDGKLVRPNVVMYSTIIDSMCKDKLVNDAFDLYCEM 224

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPK--PFSAFLAACDTMDKP 411
               + P   T ++L        +L  A  L ++ IS   NP    FS  +       K 
Sbjct: 225 VSKRISPDVVTYSSLISGFCVVGKLKYAVDLFNRMISDNINPNVYTFSILIDGFCKEGKV 284

Query: 412 ERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
             A  + A M +K ++ D+ TY          N+  +   +  QV+ AK +  +   MA+
Sbjct: 285 REAKNVLAVMMKKNVKLDVVTY----------NSLMDGYCLVKQVNKAKSLFNV---MAQ 331

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYF----CDSKTPLGTPTYNTVLHSLVEAQESH 526
             +     S   ++       M+ E ++ F    C    P    TYN+++  L ++  + 
Sbjct: 332 RGVTPDVWSYSIMINGFCKIKMVDEAMKLFEEMHCKQIFP-NVVTYNSLVDGLCKSGRTS 390

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
            A+E+  +M   G P N  TYN ++D          A  L++ +   G  P   TYT LI
Sbjct: 391 CALELVDEMHDRGQPSNIITYNSILDAICKNNHVDKAIVLLTKIKEKGIQPDIFTYTVLI 450

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
             L   G  D+A  + + + ++G   ++  Y +++   C KG  D    ++ +M  N   
Sbjct: 451 NGLCKVGRLDDAQKVFEDLLVKGYSPNIYTYTSLINGFCNKGFFDEGLAMLSKMKDNGCI 510

Query: 647 PDPST 651
           P+  T
Sbjct: 511 PNAIT 515



 Score = 65.1 bits (157), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 75/137 (54%)

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           +  +L SL++A++   A+ + +QM+  GI P+  T N++++C S +   K + ++ + ++
Sbjct: 61  FGKILGSLLKAKQYQTALSLSQQMEFNGIKPDFITCNLLMNCFSQLGHIKFSFSVFAKIL 120

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
           + G++P  +T+T LIK L   G+  +AL   D V  +G   D + Y T++   C  G   
Sbjct: 121 KKGYHPDAVTFTILIKGLCLKGEVHKALYFHDKVVAQGFQLDQVSYGTLINGLCRVGETK 180

Query: 632 VIEFIIEQMHQNKVQPD 648
               ++ ++    V+P+
Sbjct: 181 AAVQLLRRVDGKLVRPN 197



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/281 (21%), Positives = 119/281 (42%), Gaps = 25/281 (8%)

Query: 414 AIKIFAKMRQK-LRPDIRTYELLFS---LFGNVN-APYEEGNMFSQVDSAKRINAIEMDM 468
           +  +FAK+ +K   PD  T+ +L     L G V+ A Y    + +Q              
Sbjct: 112 SFSVFAKILKKGYHPDAVTFTILIKGLCLKGEVHKALYFHDKVVAQ-------------- 157

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPT---YNTVLHSLVEAQES 525
                Q   +S   L+  L   G  +  +Q        L  P    Y+T++ S+ + +  
Sbjct: 158 ---GFQLDQVSYGTLINGLCRVGETKAAVQLLRRVDGKLVRPNVVMYSTIIDSMCKDKLV 214

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
           + A +++ +M +  I P+  TY+ +I    ++   K A  L + M+ D   P   T++ L
Sbjct: 215 NDAFDLYCEMVSKRISPDVVTYSSLISGFCVVGKLKYAVDLFNRMISDNINPNVYTFSIL 274

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           I      G   EA N+L ++  + +  DV+ YN+++   C   +++  + +   M Q  V
Sbjct: 275 IDGFCKEGKVREAKNVLAVMMKKNVKLDVVTYNSLMDGYCLVKQVNKAKSLFNVMAQRGV 334

Query: 646 QPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
            PD  +   + +G+      + AM+  + +  + +   V T
Sbjct: 335 TPDVWSYSIMINGFCKIKMVDEAMKLFEEMHCKQIFPNVVT 375


>gi|224133034|ref|XP_002327945.1| predicted protein [Populus trichocarpa]
 gi|222837354|gb|EEE75733.1| predicted protein [Populus trichocarpa]
          Length = 1450

 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 74/337 (21%), Positives = 142/337 (42%), Gaps = 27/337 (8%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
            S ++   G+     LA ++  + +   ++ +   Y+  +             E+  +M+
Sbjct: 225 LSTILAVLGKANQEPLAVEVFTRAEP-SVENTVKVYNAMMGVYARSGKFNKVQELFDLMR 283

Query: 356 QNNLKPQDSTIATLSVECSKALEL--DLAEALLDQISRCTNPKP----FSAFLAACDTMD 409
           +   +P   +  TL     KA E+  +LA  LL ++ R +  +P    ++  ++AC    
Sbjct: 284 ERGCEPDLVSFNTLINARLKAGEMTPNLAIELLTEVRR-SGLRPDIITYNTLISACSRAS 342

Query: 410 KPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
             E A+ +F  M      PD+ TY  + S++G      +   +F+             D+
Sbjct: 343 NLEEAVNVFDDMVAHHCEPDLWTYNAMISVYGRCGLSGKAEQLFN-------------DL 389

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP----TYNTVLHSLVEAQE 524
                    +S  + L A   EG + E ++  C+    +G      TYNT++H   +  +
Sbjct: 390 ESRGFFPDAVSYNSFLYAFAREGNV-EKVKDICEEMVKIGFGKDEMTYNTMIHMYGKQGQ 448

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
           +  A+++++ MK+ G  P+  TY ++ID        + A+ ++S M+  G  P   TY+A
Sbjct: 449 NDLALQLYRDMKSSGRNPDVITYTVLIDSLGKTNKIEEAAGMMSEMLNTGVKPTLRTYSA 508

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTIL 621
           LI      G   EA    D +   G   D L Y+ +L
Sbjct: 509 LICGYAKAGKPVEAEETFDCMLRSGTRPDQLAYSVML 545



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 116/606 (19%), Positives = 230/606 (37%), Gaps = 73/606 (12%)

Query: 98  ARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNL-IYFLGE--RYGI 154
           ARS     V E + +M E+    +   +  ++ A  K G  E   NL I  L E  R G+
Sbjct: 267 ARSGKFNKVQELFDLMRERGCEPDLVSFNTLINARLKAG--EMTPNLAIELLTEVRRSGL 324

Query: 155 YPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHE 214
            P +  YN+ + AC++  ++  A    D M +     +  TY  ++ +           +
Sbjct: 325 RPDIITYNTLISACSRASNLEEAVNVFDDMVAHHCEPDLWTYNAMISVYGRCGLSGKAEQ 384

Query: 215 IWEDY-IKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLR 273
           ++ D   + +     S   F+++F R  +++   +  + MV +   GK  +         
Sbjct: 385 LFNDLESRGFFPDAVSYNSFLYAFAREGNVEKVKDICEEMVKIGF-GKDEM--------- 434

Query: 274 SSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDG 333
                                +++ +IH  G+   + LA QL   M+S G  P   TY  
Sbjct: 435 ---------------------TYNTMIHMYGKQGQNDLALQLYRDMKSSGRNPDVITYTV 473

Query: 334 FIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRC- 392
            I ++     +     ++  M    +KP   T + L    +KA +   AE   D + R  
Sbjct: 474 LIDSLGKTNKIEEAAGMMSEMLNTGVKPTLRTYSALICGYAKAGKPVEAEETFDCMLRSG 533

Query: 393 TNPK--PFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEG 449
           T P    +S  L      ++P+RA+  + +M    + P+   YEL+    GN N   + G
Sbjct: 534 TRPDQLAYSVMLDIHLRFNEPKRAMTFYKEMIHDGIMPEHSLYELMLRTLGNANKVEDIG 593

Query: 450 NMFSQVDSAKRIN--AIEMDMARNNIQHSHISMKNLLKAL-------------------- 487
            +   ++    +N  AI   + + +       M  L +A+                    
Sbjct: 594 RVVRDMEEVCGMNPQAISYILVKGDCYDEAAKM--LRRAISDRYEIDRENLLSILSSYSS 651

Query: 488 -GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAAT 546
            G   +  +L++   +            ++  L +AQ+   A++ +   +  G   +   
Sbjct: 652 SGRHSVALDLLELLKEHTPRSSQMITEALVVMLCKAQQLDTALKEYSNSRELGFTGSFTM 711

Query: 547 YNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVS 606
           +  +I CC     F  AS + S M   G       Y +++ +    G  + A +L+DL  
Sbjct: 712 FEALIQCCLENELFTEASQVFSDMRFCGIKASECLYQSMMLLYCKMGFPETAHHLIDLTE 771

Query: 607 LEG-IPHDVLLYNTILKKACEKGRIDV---IEFIIEQMHQNKVQPDPSTCHFVFSGYVNC 662
            +G + +++ +Y  +++     GR+ +    E +   M Q+ +  +    + +   Y   
Sbjct: 772 TDGTVLNNISVYVDVIEAY---GRLKLWQKAESVAGNMRQSCITVNRKVWNALIEAYAAS 828

Query: 663 GFHNSA 668
           G +  A
Sbjct: 829 GCYERA 834



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 81/394 (20%), Positives = 156/394 (39%), Gaps = 25/394 (6%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           W+++ +I   GR   SG AEQL   ++S G  P + +Y+ F+ A   +  +    ++ + 
Sbjct: 364 WTYNAMISVYGRCGLSGKAEQLFNDLESRGFFPDAVSYNSFLYAFAREGNVEKVKDICEE 423

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALL-DQISRCTNPK--PFSAFLAACDTMDK 410
           M +      + T  T+     K  + DLA  L  D  S   NP    ++  + +    +K
Sbjct: 424 MVKIGFGKDEMTYNTMIHMYGKQGQNDLALQLYRDMKSSGRNPDVITYTVLIDSLGKTNK 483

Query: 411 PERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
            E A  + ++M    ++P +RTY  L   +     P E    F   D   R       +A
Sbjct: 484 IEEAAGMMSEMLNTGVKPTLRTYSALICGYAKAGKPVEAEETF---DCMLRSGTRPDQLA 540

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAM 529
            + +   H+      +A+      +E+I    D   P  +  Y  +L +L  A +     
Sbjct: 541 YSVMLDIHLRFNEPKRAM---TFYKEMIH---DGIMPEHS-LYELMLRTLGNANKVEDIG 593

Query: 530 EIFKQM-KTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
            + + M + CG+ P A +Y I++       C+  A+ ++   + D +        +++  
Sbjct: 594 RVVRDMEEVCGMNPQAISY-ILVKG----DCYDEAAKMLRRAISDRYEIDRENLLSILSS 648

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
               G    AL+LL+L+         ++   ++   C+  ++D       + + N  +  
Sbjct: 649 YSSSGRHSVALDLLELLKEHTPRSSQMITEALVVMLCKAQQLDT----ALKEYSNSRELG 704

Query: 649 PSTCHFVFSGYVNCGFHNSAM-EALQVLSMRMLC 681
            +    +F   + C   N    EA QV S    C
Sbjct: 705 FTGSFTMFEALIQCCLENELFTEASQVFSDMRFC 738



 Score = 56.2 bits (134), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 52/262 (19%), Positives = 110/262 (41%), Gaps = 15/262 (5%)

Query: 413 RAIKIFA--KMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           RA +++    +R    P+ R    + ++ G  N       +F++ + +            
Sbjct: 204 RAFEVYEWLNLRHWYSPNARMLSTILAVLGKANQEPLAVEVFTRAEPSVE---------- 253

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQE--SHRA 528
            N    + +M  +    G    ++EL     +        ++NT++++ ++A E   + A
Sbjct: 254 -NTVKVYNAMMGVYARSGKFNKVQELFDLMRERGCEPDLVSFNTLINARLKAGEMTPNLA 312

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
           +E+  +++  G+ P+  TYN +I  CS     + A  +   MV     P   TY A+I +
Sbjct: 313 IELLTEVRRSGLRPDIITYNTLISACSRASNLEEAVNVFDDMVAHHCEPDLWTYNAMISV 372

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
               G   +A  L + +   G   D + YN+ L     +G ++ ++ I E+M +     D
Sbjct: 373 YGRCGLSGKAEQLFNDLESRGFFPDAVSYNSFLYAFAREGNVEKVKDICEEMVKIGFGKD 432

Query: 649 PSTCHFVFSGYVNCGFHNSAME 670
             T + +   Y   G ++ A++
Sbjct: 433 EMTYNTMIHMYGKQGQNDLALQ 454



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 70/168 (41%), Gaps = 3/168 (1%)

Query: 513 NTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVR 572
           +T+L  L +A +   A+E+F + +   +      YN M+   +    F     L  +M  
Sbjct: 226 STILAVLGKANQEPLAVEVFTRAEP-SVENTVKVYNAMMGVYARSGKFNKVQELFDLMRE 284

Query: 573 DGFYPQTMTYTALIKILLDYGDFDE--ALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
            G  P  +++  LI   L  G+     A+ LL  V   G+  D++ YNT++        +
Sbjct: 285 RGCEPDLVSFNTLINARLKAGEMTPNLAIELLTEVRRSGLRPDIITYNTLISACSRASNL 344

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678
           +    + + M  +  +PD  T + + S Y  CG    A +    L  R
Sbjct: 345 EEAVNVFDDMVAHHCEPDLWTYNAMISVYGRCGLSGKAEQLFNDLESR 392



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/262 (20%), Positives = 105/262 (40%), Gaps = 22/262 (8%)

Query: 394 NPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFS 453
           N +  S  LA     ++   A+++F +    +   ++ Y  +  ++        + N   
Sbjct: 221 NARMLSTILAVLGKANQEPLAVEVFTRAEPSVENTVKVYNAMMGVYARSG----KFNKVQ 276

Query: 454 QVDSAKRINAIEMDMARNNIQHSHISMKNLLKA-LGAEGMIREL-IQYFCDSKTPLGTP- 510
           ++    R    E D+         +S   L+ A L A  M   L I+   + +     P 
Sbjct: 277 ELFDLMRERGCEPDL---------VSFNTLINARLKAGEMTPNLAIELLTEVRRSGLRPD 327

Query: 511 --TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASA--L 566
             TYNT++ +   A     A+ +F  M      P+  TYN MI      RC  S  A  L
Sbjct: 328 IITYNTLISACSRASNLEEAVNVFDDMVAHHCEPDLWTYNAMISVYG--RCGLSGKAEQL 385

Query: 567 VSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE 626
            + +   GF+P  ++Y + +      G+ ++  ++ + +   G   D + YNT++    +
Sbjct: 386 FNDLESRGFFPDAVSYNSFLYAFAREGNVEKVKDICEEMVKIGFGKDEMTYNTMIHMYGK 445

Query: 627 KGRIDVIEFIIEQMHQNKVQPD 648
           +G+ D+   +   M  +   PD
Sbjct: 446 QGQNDLALQLYRDMKSSGRNPD 467



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 40/196 (20%), Positives = 81/196 (41%), Gaps = 3/196 (1%)

Query: 459  KRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIREL---IQYFCDSKTPLGTPTYNTV 515
            +R  A+   M ++    +  S+  LL+AL  +G + EL   +Q   D    +   +   +
Sbjct: 832  ERARAVFNTMMKDGPSPTVDSINGLLQALIVDGRLEELYVVVQELQDIGFKISKSSILLM 891

Query: 516  LHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGF 575
            L +   A       +I+  MK  G  P+   Y +M       +  +   A++S M   GF
Sbjct: 892  LDAFARAGNIFEVKKIYHGMKAAGYFPSMHLYRVMAQLLCRGKQVRDVEAMLSEMEEAGF 951

Query: 576  YPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEF 635
             P    + +++K+ +   DF +   +   +  +G+  D   YN ++   C   R      
Sbjct: 952  KPDLSIWNSVLKMYVAIDDFRKTTQIYQRIKEDGLEPDEDTYNILIVMYCRDHRPKEGLV 1011

Query: 636  IIEQMHQNKVQPDPST 651
            ++++M    ++P   T
Sbjct: 1012 LMDEMRTVGLEPKLDT 1027



 Score = 44.7 bits (104), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 60/340 (17%), Positives = 133/340 (39%), Gaps = 51/340 (15%)

Query: 290  KVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGME 349
            K+ + S   ++ A  R  N    +++   M++ G  PS H Y    + +   + +R+   
Sbjct: 882  KISKSSILLMLDAFARAGNIFEVKKIYHGMKAAGYFPSMHLYRVMAQLLCRGKQVRDVEA 941

Query: 350  VLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMD 409
            +L  M++   KP       LS+                          +++ L     +D
Sbjct: 942  MLSEMEEAGFKPD------LSI--------------------------WNSVLKMYVAID 969

Query: 410  KPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
               +  +I+ ++++  L PD  TY +L  ++   + P E                + MD 
Sbjct: 970  DFRKTTQIYQRIKEDGLEPDEDTYNILIVMYCRDHRPKE--------------GLVLMDE 1015

Query: 469  ARN-NIQHSHISMKNLLKALGAEGMI---RELIQYFCDSKTPLGTPTYNTVLHSLVEAQE 524
             R   ++    + K+L+ + G + ++    EL +    +   L    Y+ ++     +  
Sbjct: 1016 MRTVGLEPKLDTYKSLVASFGKQQLVEQAEELFEELQSTGCKLDRSFYHIMMKIYRNSGS 1075

Query: 525  SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
              +A  +F  MK  G+ P  AT ++++         + A  ++S +        T+ Y++
Sbjct: 1076 HSKAQRLFSMMKDEGVEPTIATMHLLMVSYGSSGQPQEAEKVLSNLKETDANLSTLPYSS 1135

Query: 585  LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKA 624
            +I   +  GD++  +  L  V  EG+  D  ++   ++ A
Sbjct: 1136 VIDAYVRNGDYNAGIQKLKQVKEEGLEPDHRIWTCFIRAA 1175



 Score = 40.4 bits (93), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 50/238 (21%), Positives = 92/238 (38%), Gaps = 20/238 (8%)

Query: 511  TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
            TY +++ S  + Q   +A E+F+++++ G   + + Y+IM+           A  L SMM
Sbjct: 1027 TYKSLVASFGKQQLVEQAEELFEELQSTGCKLDRSFYHIMMKIYRNSGSHSKAQRLFSMM 1086

Query: 571  VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
              +G  P   T   L+      G   EA  +L  +         L Y++++      G  
Sbjct: 1087 KDEGVEPTIATMHLLMVSYGSSGQPQEAEKVLSNLKETDANLSTLPYSSVIDAYVRNGDY 1146

Query: 631  DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG-FHNSAMEALQVLSMRMLCEEVSTLEE 689
            +     ++Q+ +  ++PD    H +++ ++          EA+ +L         + L +
Sbjct: 1147 NAGIQKLKQVKEEGLEPD----HRIWTCFIRAASLSQHTSEAILLL---------NALRD 1193

Query: 690  KRSDFEDLILAEDSEAESRILQFCEDSNENLA------FTAALLQLRWCTIVGFPISW 741
               D    +L E  E     L  C +  E L       F  AL  L W   +    SW
Sbjct: 1194 TGFDLPIRLLTEKPEPLVSALDLCLEMLETLGDNAAFNFVNALEDLLWAFELRATASW 1251


>gi|326493766|dbj|BAJ85345.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 671

 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 87/352 (24%), Positives = 141/352 (40%), Gaps = 19/352 (5%)

Query: 314 QLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVEC 373
           QL+++M      P+  T+      +  +  +   MEVL+ M +   +P      TL    
Sbjct: 335 QLIVEMVRKDCLPNEATFSMLTSCLCQNGLVDCAMEVLEQMHKYGCRPDAVIYNTLIYSF 394

Query: 374 SKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYE 433
           S+   +D A  LL+ +    +P   S F AA   + + ER       + Q LR D    E
Sbjct: 395 SEQGRVDDALKLLNSMP--CSPDVIS-FNAALKGLCRAERWDDAEELIVQMLREDCPLIE 451

Query: 434 LLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM--DMARNNIQHSHISMKNLLKALGAEG 491
           + F++            + S   + +  NAIE+   M +       ++  +L+  L  +G
Sbjct: 452 MTFNIL-----------IDSLCQNGRVNNAIEVFEQMPKYGCTPDIVTYSSLINGLSEQG 500

Query: 492 MIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI 551
           ++   I+ F           YN VL  L  A     A E+   M     PPN  T+NI+I
Sbjct: 501 LVESAIELFQSMPCKPDIFGYNAVLKGLCRAARWEDAGELISNMARKDCPPNEITFNILI 560

Query: 552 DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIP 611
           +          A  +   M + G  P   TY ALI    + G  D+A  LL  +S +   
Sbjct: 561 NSLCQKGLVDRAIEVFEQMPKYGSTPDIFTYNALINGFSEQGRLDDARRLLSTMSCK--- 617

Query: 612 HDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
            D + YN+ LK  C   R    E ++ +M + K  P+  T  +    +V  G
Sbjct: 618 PDAVSYNSALKGLCRAERWKEAEEVVAEMLRMKCPPNEVTFKYANRLFVPNG 669



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 101/440 (22%), Positives = 189/440 (42%), Gaps = 42/440 (9%)

Query: 270 GRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHA-CGRTQNSGLAEQLMLQMQSLGLQPSS 328
           G  RS RL   + L A   +    ++++ V+   CG  Q    AE LM +M      P+ 
Sbjct: 189 GYCRSGRLADALALIASMPVAPDTYTYNTVLMGLCGARQWED-AEALMAEMVRNHCPPNE 247

Query: 329 HTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ 388
            T+   IRA   +  L   +++L  M Q    P     +TL    S+   +D A  LL+ 
Sbjct: 248 VTFATQIRAFCQNGLLDRAVQLLDRMPQYGCTPDVVIYSTLVNGFSEQGRVDDAIELLNG 307

Query: 389 ISRCTNPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLF---GNVNA 444
           +    N   ++A L       + E   ++  +M R+   P+  T+ +L S     G V+ 
Sbjct: 308 MLCKPNTICYNAALKGLCIAQRWEDVGQLIVEMVRKDCLPNEATFSMLTSCLCQNGLVDC 367

Query: 445 PYE------------EGNMFSQV-----------DSAKRINAIEMDMARNNIQHSHISMK 481
             E            +  +++ +           D+ K +N++       ++   + ++K
Sbjct: 368 AMEVLEQMHKYGCRPDAVIYNTLIYSFSEQGRVDDALKLLNSMP---CSPDVISFNAALK 424

Query: 482 NLLKAL---GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTC 538
            L +A     AE +I ++++  C    PL   T+N ++ SL +    + A+E+F+QM   
Sbjct: 425 GLCRAERWDDAEELIVQMLREDC----PLIEMTFNILIDSLCQNGRVNNAIEVFEQMPKY 480

Query: 539 GIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEA 598
           G  P+  TY+ +I+  S     +SA  L   M      P    Y A++K L     +++A
Sbjct: 481 GCTPDIVTYSSLINGLSEQGLVESAIELFQSMP---CKPDIFGYNAVLKGLCRAARWEDA 537

Query: 599 LNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
             L+  ++ +  P + + +N ++   C+KG +D    + EQM +    PD  T + + +G
Sbjct: 538 GELISNMARKDCPPNEITFNILINSLCQKGLVDRAIEVFEQMPKYGSTPDIFTYNALING 597

Query: 659 YVNCGFHNSAMEALQVLSMR 678
           +   G  + A   L  +S +
Sbjct: 598 FSEQGRLDDARRLLSTMSCK 617



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 61/121 (50%), Gaps = 3/121 (2%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TY T+++    +     A+ +   M    + P+  TYN ++      R ++ A AL++ M
Sbjct: 182 TYTTLINGYCRSGRLADALALIASMP---VAPDTYTYNTVLMGLCGARQWEDAEALMAEM 238

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           VR+   P  +T+   I+     G  D A+ LLD +   G   DV++Y+T++    E+GR+
Sbjct: 239 VRNHCPPNEVTFATQIRAFCQNGLLDRAVQLLDRMPQYGCTPDVVIYSTLVNGFSEQGRV 298

Query: 631 D 631
           D
Sbjct: 299 D 299



 Score = 50.1 bits (118), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 92/485 (18%), Positives = 182/485 (37%), Gaps = 73/485 (15%)

Query: 121 NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLC 180
           N   +   ++A C+ G L+ A  L+  +  +YG  P + +Y++ +   ++   +  A   
Sbjct: 246 NEVTFATQIRAFCQNGLLDRAVQLLDRM-PQYGCTPDVVIYSTLVNGFSEQGRVDDA--- 301

Query: 181 LDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSL---SIFSLRKFVWSF 237
           ++L++  +   N + Y   LK     +    V ++  + ++   L   + FS+       
Sbjct: 302 IELLNGMLCKPNTICYNAALKGLCIAQRWEDVGQLIVEMVRKDCLPNEATFSMLTSCLCQ 361

Query: 238 TRLRDLKSAYETLQHMVALAMMGKLYINRT------SEGRLRSSRLDIPIPLNALPVMKV 291
             L D   A E L+ M          I  T       +GR+  + L +   LN++P    
Sbjct: 362 NGLVD--CAMEVLEQMHKYGCRPDAVIYNTLIYSFSEQGRVDDA-LKL---LNSMPCSPD 415

Query: 292 LRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVL 351
           +  SF+  +    R +    AE+L++QM          T++  I ++  +  + N +EV 
Sbjct: 416 V-ISFNAALKGLCRAERWDDAEELIVQMLREDCPLIEMTFNILIDSLCQNGRVNNAIEVF 474

Query: 352 KIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKP 411
           + M +    P   T                                +S+ +         
Sbjct: 475 EQMPKYGCTPDIVT--------------------------------YSSLINGLSEQGLV 502

Query: 412 ERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471
           E AI++F  M    +PDI  Y  +           + G + S             +MAR 
Sbjct: 503 ESAIELFQSM--PCKPDIFGYNAVLKGLCRAARWEDAGELIS-------------NMARK 547

Query: 472 NIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRA 528
           +   + I+   L+ +L  +G++   I+ F        TP   TYN +++      E  R 
Sbjct: 548 DCPPNEITFNILINSLCQKGLVDRAIEVFEQMPKYGSTPDIFTYNALINGF---SEQGRL 604

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
            +  + + T    P+A +YN  +        +K A  +V+ M+R    P  +T+    ++
Sbjct: 605 DDARRLLSTMSCKPDAVSYNSALKGLCRAERWKEAEEVVAEMLRMKCPPNEVTFKYANRL 664

Query: 589 LLDYG 593
            +  G
Sbjct: 665 FVPNG 669


>gi|298714808|emb|CBJ25707.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 1273

 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 93/416 (22%), Positives = 166/416 (39%), Gaps = 83/416 (19%)

Query: 300  IHACGRTQN-------------SGLAE---QLMLQMQSLGLQPSSHTYDGFIRAIVSDRG 343
            I ACG   N             +GL E   +L+ + +S GL P+  T+   +R +  +  
Sbjct: 671  IQACGLAANLVSYGICMDAYAKAGLWEKALELLAEARSQGLSPNIVTFTTAVRGLACND- 729

Query: 344  LRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSA 400
                 E+L +M+   +KP + T   L   C ++ ++  A A L++  R     N   ++A
Sbjct: 730  WDKAEEILSMMKSRAIKPNEVTYTELISICGRSGDVHQALAQLERARRNGLSPNLINYNA 789

Query: 401  FLAACDTMDKPERAIKIFAKMRQK----LRPDIRTYELLFSLFGNVNAPYEEGN------ 450
             +  C    + +RA+ +  +M+      L PD+ T+  +      +NA  + G+      
Sbjct: 790  CVDVCAKTGEVDRALALLEQMQTSGDPALTPDLVTFNSV------INACAKAGDWALTLW 843

Query: 451  MFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP 510
            +FS++ +A                                  ++  IQ F          
Sbjct: 844  LFSEIKAAG---------------------------------LKADIQSF---------- 860

Query: 511  TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
              N  L +  +      A+ + K+MK+ G+ P+A +Y   I  C       SA  L+  M
Sbjct: 861  --NAALDACTKGSNPEAALALLKRMKSQGLEPDAISYQSAILACRAGGDGASAVMLLRDM 918

Query: 571  VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR- 629
             + G  P+   Y  +I+ +   GD+  AL LL  +  EGI  D   Y   +  AC KGR 
Sbjct: 919  EQQGLEPRDADYNLVIETVGREGDWAGALELLKSMKAEGIAADAYTYGAAV-GACAKGRN 977

Query: 630  IDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVS 685
             D+   ++E+M    + P     + + S +   G   +AM  +  +   M C+E +
Sbjct: 978  PDLARALLEEMKDLGLTPTRFCWNSIISVHSRTGNTTAAMTLMDEMKQSMPCDETT 1033



 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 79/359 (22%), Positives = 148/359 (41%), Gaps = 53/359 (14%)

Query: 295  SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
            SF+  + AC +  N   A  L+ +M+S GL+P + +Y   I A  +     + + +L+ M
Sbjct: 859  SFNAALDACTKGSNPEAALALLKRMKSQGLEPDAISYQSAILACRAGGDGASAVMLLRDM 918

Query: 355  QQNNLKPQDS----TIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDK 410
            +Q  L+P+D+     I T+  E   A  L+L +++  +     +   + A + AC     
Sbjct: 919  EQQGLEPRDADYNLVIETVGREGDWAGALELLKSMKAE-GIAADAYTYGAAVGACAKGRN 977

Query: 411  PERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
            P+ A  +  +M+     D+      F                                  
Sbjct: 978  PDLARALLEEMK-----DLGLTPTRFCW-------------------------------- 1000

Query: 471  NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAME 530
            N+I   H    N   A+    ++ E+ Q       P    T++ ++H   + ++   A  
Sbjct: 1001 NSIISVHSRTGNTTAAMT---LMDEMKQSM-----PCDETTFSAMMHGCAQTRDWDAAGR 1052

Query: 531  IFKQMKTCGIPPN-AATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
            + ++M   G+ PN A  Y +++  C      + A  L+  M +DG  P   +YT L    
Sbjct: 1053 LLEEMNAAGLKPNDACYYTLLVAACRAGE-LRLAEGLIKGMRKDGAAPDLYSYTTLSAAC 1111

Query: 590  LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
              + D+  AL L++ + ++GIP    +Y   L  AC +G  ++ E ++E M    V+ D
Sbjct: 1112 GRFHDWRMALRLIESMKIDGIPATKKIYAAAL-AACGRGEAEIAEILLEMMRSQGVELD 1169



 Score = 73.2 bits (178), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 89/401 (22%), Positives = 168/401 (41%), Gaps = 38/401 (9%)

Query: 295  SFSDVIHACGRTQNSGLAEQLMLQMQSL---GLQPSSHTYDGFIRAIVSDRGLRNGMEVL 351
            +++++I  CGR   SG   Q + Q++     GL P+   Y+  +        +   + +L
Sbjct: 751  TYTELISICGR---SGDVHQALAQLERARRNGLSPNLINYNACVDVCAKTGEVDRALALL 807

Query: 352  KIMQQNN---LKPQDSTIATLSVECSKALELDLAEALLDQISRC---TNPKPFSAFLAAC 405
            + MQ +    L P   T  ++   C+KA +  L   L  +I       + + F+A L AC
Sbjct: 808  EQMQTSGDPALTPDLVTFNSVINACAKAGDWALTLWLFSEIKAAGLKADIQSFNAALDAC 867

Query: 406  DTMDKPERAIKIFAKMR-QKLRPDIRTYE--LLFSLFGNVNAPYEEGNMFSQVDSAKRIN 462
                 PE A+ +  +M+ Q L PD  +Y+  +L    G               D A  + 
Sbjct: 868  TKGSNPEAALALLKRMKSQGLEPDAISYQSAILACRAGG--------------DGASAVM 913

Query: 463  AIEMDMARNNIQHSHISMKNLLKALGAEG---MIRELIQYFCDSKTPLGTPTYNTVLHSL 519
             +  DM +  ++        +++ +G EG      EL++            TY   + + 
Sbjct: 914  LLR-DMEQQGLEPRDADYNLVIETVGREGDWAGALELLKSMKAEGIAADAYTYGAAVGAC 972

Query: 520  VEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQT 579
             + +    A  + ++MK  G+ P    +N +I   S      +A  L+  M +     +T
Sbjct: 973  AKGRNPDLARALLEEMKDLGLTPTRFCWNSIISVHSRTGNTTAAMTLMDEMKQSMPCDET 1032

Query: 580  MTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQ 639
             T++A++       D+D A  LL+ ++  G+  +   Y T+L  AC  G + + E +I+ 
Sbjct: 1033 -TFSAMMHGCAQTRDWDAAGRLLEEMNAAGLKPNDACYYTLLVAACRAGELRLAEGLIKG 1091

Query: 640  MHQNKVQPDPSTCHFVFSGYVNCG-FHNSAMEALQVLSMRM 679
            M ++   PD    +   +    CG FH+  M    + SM++
Sbjct: 1092 MRKDGAAPD---LYSYTTLSAACGRFHDWRMALRLIESMKI 1129



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 75/331 (22%), Positives = 134/331 (40%), Gaps = 24/331 (7%)

Query: 348 MEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEA-----LLDQISRCT---NPKPFS 399
           +E+L+  +   +KP + T AT    C+KA     A A     LL+++        P    
Sbjct: 515 LELLEEAKSKGVKPTEVTYATAIGACAKATTNVKANARKAVLLLEEMEAAGLEPYPPAHQ 574

Query: 400 AFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSA 458
           A L      +    A+ + AKMR+   R    +Y         V    +  N  + +D  
Sbjct: 575 AALTVLAASEGHRAAMDLLAKMRENGTRLTSASYSPALKSAAQVG---DWRNAIALIDVM 631

Query: 459 KRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQY-FCDSKTPLGTPTYNTVLH 517
            R +  + D   + +  ++ +M    KA   E   R L +   C     L   +Y   + 
Sbjct: 632 TRASVTDKDAGPDVVCFNY-AMTACAKAGECELAHRVLSRIQACGLAANL--VSYGICMD 688

Query: 518 SLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRC--FKSASALVSMMVRDGF 575
           +  +A    +A+E+  + ++ G+ PN  T+   +     + C  +  A  ++SMM     
Sbjct: 689 AYAKAGLWEKALELLAEARSQGLSPNIVTFTTAV---RGLACNDWDKAEEILSMMKSRAI 745

Query: 576 YPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEF 635
            P  +TYT LI I    GD  +AL  L+     G+  +++ YN  +    + G +D    
Sbjct: 746 KPNEVTYTELISICGRSGDVHQALAQLERARRNGLSPNLINYNACVDVCAKTGEVDRALA 805

Query: 636 IIEQMHQN---KVQPDPSTCHFVFSGYVNCG 663
           ++EQM  +    + PD  T + V +     G
Sbjct: 806 LLEQMQTSGDPALTPDLVTFNSVINACAKAG 836



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 60/300 (20%), Positives = 125/300 (41%), Gaps = 22/300 (7%)

Query: 294  WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
            +++   + AC + +N  LA  L+ +M+ LGL P+   ++  I            M ++  
Sbjct: 963  YTYGAAVGACAKGRNPDLARALLEEMKDLGLTPTRFCWNSIISVHSRTGNTTAAMTLMDE 1022

Query: 354  MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP-----FSAFLAACDTM 408
            M+Q ++   ++T + +   C++  + D A  LL++++     KP     ++  +AAC   
Sbjct: 1023 MKQ-SMPCDETTFSAMMHGCAQTRDWDAAGRLLEEMN-AAGLKPNDACYYTLLVAACRAG 1080

Query: 409  DKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
            +       I    +    PD+ +Y  L +  G     + +  M  ++  + +I+ I    
Sbjct: 1081 ELRLAEGLIKGMRKDGAAPDLYSYTTLSAACGR----FHDWRMALRLIESMKIDGIP--- 1133

Query: 469  ARNNIQHSHISMKNLLKALG-AEGMIRE-LIQYFCDSKTPLGTPTYNTVLHSLVEAQESH 526
            A   I  +       L A G  E  I E L++        L     +  L +        
Sbjct: 1134 ATKKIYAAA------LAACGRGEAEIAEILLEMMRSQGVELDDVGRSHALVAFGRGGRPD 1187

Query: 527  RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
            +A+ +   ++  G PPN   +N  I+ C++        +L++ M R G  P  +++ +L+
Sbjct: 1188 KALVLMDDIREKGPPPNLQCFNGAIEACALADDIDGGISLLAEMGRAGIVPNGVSFRSLV 1247



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 70/359 (19%), Positives = 139/359 (38%), Gaps = 18/359 (5%)

Query: 295  SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
            S+   I AC    +   A  L+  M+  GL+P    Y+  I  +  +      +E+LK M
Sbjct: 894  SYQSAILACRAGGDGASAVMLLRDMEQQGLEPRDADYNLVIETVGREGDWAGALELLKSM 953

Query: 355  QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT-NPKPF--SAFLAACDTMDKP 411
            +   +     T       C+K    DLA ALL+++      P  F  ++ ++        
Sbjct: 954  KAEGIAADAYTYGAAVGACAKGRNPDLARALLEEMKDLGLTPTRFCWNSIISVHSRTGNT 1013

Query: 412  ERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSA--KRINAIEMDMA 469
              A+ +  +M+Q +  D  T+  +             G +  ++++A  K  +A    + 
Sbjct: 1014 TAAMTLMDEMKQSMPCDETTFSAMMHGCAQTRDWDAAGRLLEEMNAAGLKPNDACYYTLL 1073

Query: 470  RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAM 529
                +   + +        AEG+I+ + +   D   P    +Y T+  +     +   A+
Sbjct: 1074 VAACRAGELRL--------AEGLIKGMRK---DGAAP-DLYSYTTLSAACGRFHDWRMAL 1121

Query: 530  EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
             + + MK  GIP     Y   +  C      + A  L+ MM   G     +  +  +   
Sbjct: 1122 RLIESMKIDGIPATKKIYAAALAACGRGEA-EIAEILLEMMRSQGVELDDVGRSHALVAF 1180

Query: 590  LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
               G  D+AL L+D +  +G P ++  +N  ++       ID    ++ +M +  + P+
Sbjct: 1181 GRGGRPDKALVLMDDIREKGPPPNLQCFNGAIEACALADDIDGGISLLAEMGRAGIVPN 1239



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 105/623 (16%), Positives = 225/623 (36%), Gaps = 104/623 (16%)

Query: 112 MMEEKEIGL--NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACA 169
           M E +E G+      Y  +++  CK G +EEA+ ++  +  + G  P   V N+ L  C 
Sbjct: 123 MSEVEEAGMVPGEDTYSGVIRDCCKSGRIEEATRMLDAMISK-GYKPPQGVVNTVLDTCT 181

Query: 170 KLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH----YSL 225
              +       L  M ++ +  ++ TY + +K      + + V  +WE ++        +
Sbjct: 182 TRKNTRKVTKVLLAMRAQGLDVDDATYRKAMKACAMANDPTQVVGVWELFVGKGRVVTDV 241

Query: 226 SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNA 285
           +   + +   +   L D K             ++G L    T+ G              A
Sbjct: 242 AAAEVSRVARAMGSLGDWKG------------IIGLLGTKSTAGG-------------GA 276

Query: 286 LPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQ---PSSHTYDGFIRAIVSDR 342
           LP +  L +++    HA       G A+ ++  ++ +G       + TY    +A V  R
Sbjct: 277 LPDLDRLSYNWLVSAHA-----QLGDAKAVLATIEDMGRNGHPADADTYSLAFKAFVKSR 331

Query: 343 GLRNG--MEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSA 400
           G   G  ++V + MQ ++ +     +    VE  + + +   EA  +  S   +   +  
Sbjct: 332 GRHWGAALDVFRAMQSSSAETTPRRVGGCVVE-GEGVGVAEVEASAEVSSELLSTDVWCK 390

Query: 401 FLAACDTMDKPER----AIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEG-NMFSQ 454
            +        P +    A+ +  + +Q  +  D  T + + +  G      E+   +F Q
Sbjct: 391 TVTTVAQGSPPRKTLSAALSLMEEAQQAGVEVDAATTDAVLTALGKAKGKDEKLLALFRQ 450

Query: 455 VDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNT 514
            +         + + R +   + ++ K   KA   E +   L   F +    +    +N 
Sbjct: 451 AEERG------LRLKRQSYAWAVVAYKRCGKA--KEALDSAL--SFSERGIVMPVVGWNA 500

Query: 515 VLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASA--------- 565
            +H+     E  +A+E+ ++ K+ G+ P   TY   I  C+       A+A         
Sbjct: 501 AMHAASVTGEPGKALELLEEAKSKGVKPTEVTYATAIGACAKATTNVKANARKAVLLLEE 560

Query: 566 -------------------------------LVSMMVRDGFYPQTMTYTALIKILLDYGD 594
                                          L++ M  +G    + +Y+  +K     GD
Sbjct: 561 MEAAGLEPYPPAHQAALTVLAASEGHRAAMDLLAKMRENGTRLTSASYSPALKSAAQVGD 620

Query: 595 FDEALNLLDLVSLEGIPH-----DVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649
           +  A+ L+D+++   +       DV+ +N  +    + G  ++   ++ ++    +  + 
Sbjct: 621 WRNAIALIDVMTRASVTDKDAGPDVVCFNYAMTACAKAGECELAHRVLSRIQACGLAANL 680

Query: 650 STCHFVFSGYVNCGFHNSAMEAL 672
            +       Y   G    A+E L
Sbjct: 681 VSYGICMDAYAKAGLWEKALELL 703


>gi|224100421|ref|XP_002311869.1| predicted protein [Populus trichocarpa]
 gi|222851689|gb|EEE89236.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 79/352 (22%), Positives = 151/352 (42%), Gaps = 18/352 (5%)

Query: 314 QLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVEC 373
           +L+ +MQ  GL+P+ +TY+  I  +     + +   VL+ M    + P      TL    
Sbjct: 31  KLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDDAERVLREMINQGIVPDTVVYTTLIDGF 90

Query: 374 SKALELDLAEALLDQISRCTNPKPFSAFLAACDTM---DKPERAIKIFAKM-RQKLRPDI 429
            K   +  A  L D++ +      F A+ A    +    K   A K+F KM  + + PD 
Sbjct: 91  CKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVICGLCRCGKMMEADKVFNKMFSRGVEPDE 150

Query: 430 RTYELLFSLFGNVNAPYEEGNMFSQ-VDSAKRINAIEMDMARNNIQHSHISMKNLLKALG 488
            TY  L   +       +  ++ +Q V S    N +           ++ ++ + L  LG
Sbjct: 151 VTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPNVV-----------TYTALADGLCKLG 199

Query: 489 AEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYN 548
                 EL+   C     L   TYN++++ L ++    +A+++ ++M+  G+ P+  T+ 
Sbjct: 200 QVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEVAGMYPDTITFT 259

Query: 549 IMIDC-CSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSL 607
            ++D  C      K+   L  M+ R G  P  +T+  L+      G  ++   LL  +  
Sbjct: 260 TLMDAYCKTGEMVKAHELLREMLDR-GLQPTVITFNVLMNGFCMSGMLEDGERLLAWMLE 318

Query: 608 EGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
           +GI  +   YN+++K+ C +  +     I + M    V PD +T + +  G+
Sbjct: 319 KGIMPNTTTYNSLMKQYCIRNNMRCTTEIYKGMCARGVMPDSNTYNILIKGH 370



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 124/297 (41%), Gaps = 17/297 (5%)

Query: 412 ERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           ++ +K+  +M+ K L+P++ TY  +  L               +VD A+R+     +M  
Sbjct: 27  QKVLKLIQEMQMKGLKPNLYTYNSIILLLCKS----------GKVDDAERV---LREMIN 73

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHR 527
             I    +    L+      G I+   + F + +     P    Y  V+  L    +   
Sbjct: 74  QGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVICGLCRCGKMME 133

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A ++F +M + G+ P+  TY  +ID        + A +L + MV+ G  P  +TYTAL  
Sbjct: 134 ADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPNVVTYTALAD 193

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
            L   G  D A  LL  +  +G+  ++  YN+++   C+ G I     ++E+M    + P
Sbjct: 194 GLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEVAGMYP 253

Query: 648 DPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDFEDLILAEDSE 704
           D  T   +   Y   G    A E L+ +  R L   V T     + F    + ED E
Sbjct: 254 DTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGFCMSGMLEDGE 310



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 71/351 (20%), Positives = 137/351 (39%), Gaps = 53/351 (15%)

Query: 319 MQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALE 378
           M+  G  P   +Y   I        L+  +++++ MQ   LKP   T  ++ +   K+ +
Sbjct: 1   MKFRGDAPDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGK 60

Query: 379 LDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELL--- 435
           +D AE +L ++                               + Q + PD   Y  L   
Sbjct: 61  VDDAERVLREM-------------------------------INQGIVPDTVVYTTLIDG 89

Query: 436 FSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRE 495
           F   GN+ A Y+   +F +             M +  I    I+   ++  L   G + E
Sbjct: 90  FCKLGNIQAAYK---LFDE-------------MEKQRIVPDFIAYTAVICGLCRCGKMME 133

Query: 496 LIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID 552
             + F    +    P   TY T++    ++ E  +A  +  QM   G+ PN  TY  + D
Sbjct: 134 ADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPNVVTYTALAD 193

Query: 553 CCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPH 612
               +    +A+ L+  M   G      TY +L+  L   G+  +A+ L++ + + G+  
Sbjct: 194 GLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEVAGMYP 253

Query: 613 DVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
           D + + T++   C+ G +     ++ +M    +QP   T + + +G+   G
Sbjct: 254 DTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGFCMSG 304



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 75/351 (21%), Positives = 137/351 (39%), Gaps = 32/351 (9%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ VI    R      A+++  +M S G++P   TY   I        +     +   M
Sbjct: 117 AYTAVICGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQM 176

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLD-------QISRCTNPKPFSAFLAACDT 407
            Q+ L P   T   L+    K  ++D A  LL        Q++ CT    +++ +     
Sbjct: 177 VQSGLTPNVVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICT----YNSLVNGLCK 232

Query: 408 MDKPERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM 466
                +A+K+  +M    + PD  T+  L   +                 + + + A E+
Sbjct: 233 SGNIRQAVKLMEEMEVAGMYPDTITFTTLMDAY---------------CKTGEMVKAHEL 277

Query: 467 --DMARNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVE 521
             +M    +Q + I+   L+      GM+ +   L+ +  +      T TYN+++     
Sbjct: 278 LREMLDRGLQPTVITFNVLMNGFCMSGMLEDGERLLAWMLEKGIMPNTTTYNSLMKQYCI 337

Query: 522 AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMT 581
                   EI+K M   G+ P++ TYNI+I      R  K A  L   M   GF     +
Sbjct: 338 RNNMRCTTEIYKGMCARGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMAEKGFNLTASS 397

Query: 582 YTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDV 632
           Y ++IK         EA  L + +  EG+  D  +YN  +  +  +G ++ 
Sbjct: 398 YNSIIKGFFKKKKISEARELFEEMRREGMAADAEIYNLFVDISYGEGNMET 448



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 93/490 (18%), Positives = 183/490 (37%), Gaps = 59/490 (12%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y  ++   C GG L++   LI  + +  G+ P L  YNS +    K   +  A   L  M
Sbjct: 13  YSTVINGYCLGGELQKVLKLIQEM-QMKGLKPNLYTYNSIILLLCKSGKVDDAERVLREM 71

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIF-SLRKFVWSFTRLRDL 243
            ++ +  + V YT L+       N+ A ++++++  K   +  F +    +    R   +
Sbjct: 72  INQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVICGLCRCGKM 131

Query: 244 KSAYETLQHMVALAMM-GKLYINRTSEGRLRSSRLDIPIPL------NALPVMKVLRWSF 296
             A +    M +  +   ++      +G  +S  ++    L      + L    V   + 
Sbjct: 132 MEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPNVVTYTAL 191

Query: 297 SDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQ 356
           +D +   G+      A +L+ +M   GLQ +  TY+  +  +     +R  +++++ M+ 
Sbjct: 192 ADGLCKLGQVDT---ANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEV 248

Query: 357 NNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIK 416
             + P   T  TL     K  E+  A  LL ++                           
Sbjct: 249 AGMYPDTITFTTLMDAYCKTGEMVKAHELLREM--------------------------- 281

Query: 417 IFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHS 476
               + + L+P + T+ +L + F           M   ++  +R+ A    M    I  +
Sbjct: 282 ----LDRGLQPTVITFNVLMNGFC----------MSGMLEDGERLLAW---MLEKGIMPN 324

Query: 477 HISMKNLLKALGAEGMIR---ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFK 533
             +  +L+K       +R   E+ +  C       + TYN ++    +A+    A  + K
Sbjct: 325 TTTYNSLMKQYCIRNNMRCTTEIYKGMCARGVMPDSNTYNILIKGHCKARNMKEAWFLHK 384

Query: 534 QMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYG 593
           +M   G    A++YN +I      +    A  L   M R+G       Y   + I    G
Sbjct: 385 EMAEKGFNLTASSYNSIIKGFFKKKKISEARELFEEMRREGMAADAEIYNLFVDISYGEG 444

Query: 594 DFDEALNLLD 603
           + + AL L D
Sbjct: 445 NMETALELCD 454


>gi|297833654|ref|XP_002884709.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330549|gb|EFH60968.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 689

 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 80/157 (50%), Gaps = 1/157 (0%)

Query: 508 GTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALV 567
           G  +YNT+L++ VEA++  +   +F   +T G+ PN  TYN++I      + F+ A   +
Sbjct: 113 GIRSYNTLLNAFVEAKQWVKVESLFAYFETAGVAPNLQTYNVLIKMSCKKKEFEKARGFL 172

Query: 568 SMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKAC-E 626
           + M ++GF P   +Y+ +I  L   G  D+AL L D +S   +  DV  YN ++     E
Sbjct: 173 NWMWKEGFKPDVFSYSTVINDLAKTGKLDDALELFDEMSERRVAPDVTCYNILIDGFLKE 232

Query: 627 KGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
           K     ++   + +  + V P+  T + + SG   CG
Sbjct: 233 KDHKMAMQLWDKLLEDSSVYPNVKTHNIMISGLSKCG 269



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/271 (22%), Positives = 120/271 (44%), Gaps = 13/271 (4%)

Query: 411 PERAIKIFAKMRQKL--RPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
           P+RA+ +F +MR+     P IR+Y  L + F       +  ++F+  ++A          
Sbjct: 94  PDRALDVFKRMREIFGCEPGIRSYNTLLNAFVEAKQWVKVESLFAYFETAG--------- 144

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRA 528
              N+Q  ++ +K   K    E   R  + +           +Y+TV++ L +  +   A
Sbjct: 145 VAPNLQTYNVLIKMSCKKKEFEKA-RGFLNWMWKEGFKPDVFSYSTVINDLAKTGKLDDA 203

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDG-FYPQTMTYTALIK 587
           +E+F +M    + P+   YNI+ID     +  K A  L   ++ D   YP   T+  +I 
Sbjct: 204 LELFDEMSERRVAPDVTCYNILIDGFLKEKDHKMAMQLWDKLLEDSSVYPNVKTHNIMIS 263

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
            L   G  D+ L + D +       D+  Y++++   C++G +D  E +  ++ + K   
Sbjct: 264 GLSKCGRVDDCLKIWDRMKQNEREKDLYTYSSLIHGLCDEGNVDKAESVFNELVERKAFI 323

Query: 648 DPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678
           D  T + +  G+  CG    ++E  +++  R
Sbjct: 324 DVVTYNTMLGGFCRCGKIKESLELWRIMEQR 354



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 80/397 (20%), Positives = 166/397 (41%), Gaps = 31/397 (7%)

Query: 281 IPLNALPVMKVLR---------WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTY 331
           +P  AL V K +R          S++ +++A    +     E L    ++ G+ P+  TY
Sbjct: 93  MPDRALDVFKRMREIFGCEPGIRSYNTLLNAFVEAKQWVKVESLFAYFETAGVAPNLQTY 152

Query: 332 DGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR 391
           +  I+     +        L  M +   KP   + +T+  + +K  +LD A  L D++S 
Sbjct: 153 NVLIKMSCKKKEFEKARGFLNWMWKEGFKPDVFSYSTVINDLAKTGKLDDALELFDEMSE 212

Query: 392 CTNPKPFSAFLAACDTMDKPER---AIKIFAKMRQ--KLRPDIRTYELLFSLFGNVNAPY 446
                  + +    D   K +    A++++ K+ +   + P+++T+ ++ S         
Sbjct: 213 RRVAPDVTCYNILIDGFLKEKDHKMAMQLWDKLLEDSSVYPNVKTHNIMISGLSKC---- 268

Query: 447 EEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYF---CDS 503
                  +VD   +I      M +N  +    +  +L+  L  EG + +    F    + 
Sbjct: 269 ------GRVDDCLKIWD---RMKQNEREKDLYTYSSLIHGLCDEGNVDKAESVFNELVER 319

Query: 504 KTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSA 563
           K  +   TYNT+L       +   ++E+++ M+      N  +YNI+I           A
Sbjct: 320 KAFIDVVTYNTMLGGFCRCGKIKESLELWRIMEQRN-SVNIVSYNILIKGLLENGKIDEA 378

Query: 564 SALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKK 623
           + +  +M   G+     TY   I  L   G  ++AL ++  V  +G   DV  Y +I+  
Sbjct: 379 TMIWRLMPAKGYAADNTTYGIFIHGLCVNGYVNKALGVMQEVESKGGHLDVYAYASIIDC 438

Query: 624 ACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYV 660
            C+K R++    ++++M ++ V+ +   C+ +  G +
Sbjct: 439 LCKKRRLEEASNLVKEMSKHGVELNSHVCNALIGGLI 475



 Score = 66.6 bits (161), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 94/206 (45%), Gaps = 16/206 (7%)

Query: 475 HSHISMKNLLKALGAE------GMIRELI---QYFCDSKTPLGTPTYNTVLHSLVEAQES 525
           HS +   ++L+ L         G I ELI   +  CD    L      +V+ +  +    
Sbjct: 41  HSAVVYHHILRRLSEARMVTHVGRIVELIRSQECKCDEDVAL------SVIKTYGKNSMP 94

Query: 526 HRAMEIFKQMKTC-GIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
            RA+++FK+M+   G  P   +YN +++     + +    +L +     G  P   TY  
Sbjct: 95  DRALDVFKRMREIFGCEPGIRSYNTLLNAFVEAKQWVKVESLFAYFETAGVAPNLQTYNV 154

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
           LIK+     +F++A   L+ +  EG   DV  Y+T++    + G++D    + ++M + +
Sbjct: 155 LIKMSCKKKEFEKARGFLNWMWKEGFKPDVFSYSTVINDLAKTGKLDDALELFDEMSERR 214

Query: 645 VQPDPSTCHFVFSGYVNCGFHNSAME 670
           V PD +  + +  G++    H  AM+
Sbjct: 215 VAPDVTCYNILIDGFLKEKDHKMAMQ 240



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 74/373 (19%), Positives = 152/373 (40%), Gaps = 22/373 (5%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVL-K 352
           +S+S VI+   +T     A +L  +M    + P    Y+  I   + ++  +  M++  K
Sbjct: 185 FSYSTVINDLAKTGKLDDALELFDEMSERRVAPDVTCYNILIDGFLKEKDHKMAMQLWDK 244

Query: 353 IMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPK---PFSAFLAACDTMD 409
           +++ +++ P   T   +    SK   +D    + D++ +    K    +S+ +       
Sbjct: 245 LLEDSSVYPNVKTHNIMISGLSKCGRVDDCLKIWDRMKQNEREKDLYTYSSLIHGLCDEG 304

Query: 410 KPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
             ++A  +F ++  +K   D+ TY  +   F       E   ++  ++    +N +  ++
Sbjct: 305 NVDKAESVFNELVERKAFIDVVTYNTMLGGFCRCGKIKESLELWRIMEQRNSVNIVSYNI 364

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRE--LIQYFCDSKT-PLGTPTYNTVLHSLVEAQES 525
                         L+K L   G I E  +I     +K       TY   +H L      
Sbjct: 365 --------------LIKGLLENGKIDEATMIWRLMPAKGYAADNTTYGIFIHGLCVNGYV 410

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
           ++A+ + +++++ G   +   Y  +IDC    R  + AS LV  M + G    +    AL
Sbjct: 411 NKALGVMQEVESKGGHLDVYAYASIIDCLCKKRRLEEASNLVKEMSKHGVELNSHVCNAL 470

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           I  L+      +A  L+  +   G    V+ YN ++   CE G+       +++M +N +
Sbjct: 471 IGGLIRDSRLSDASLLMRGMGKNGCLPTVVSYNILICGLCEAGKFGEASAFVKEMLENGL 530

Query: 646 QPDPSTCHFVFSG 658
           +PD  T   +  G
Sbjct: 531 KPDLKTYSILLGG 543



 Score = 52.4 bits (124), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 115/652 (17%), Positives = 240/652 (36%), Gaps = 89/652 (13%)

Query: 79  GHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYL 138
           G+AH ++    + HIL   + +     V     ++  +E   +    L +++   K    
Sbjct: 38  GYAHSAV---VYHHILRRLSEARMVTHVGRIVELIRSQECKCDEDVALSVIKTYGKNSMP 94

Query: 139 EEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTE 198
           + A ++   + E +G  P +  YN+ L A  +    V         ++  V  N  TY  
Sbjct: 95  DRALDVFKRMREIFGCEPGIRSYNTLLNAFVEAKQWVKVESLFAYFETAGVAPNLQTYNV 154

Query: 199 LLKLAVWQKNLSA----VHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQ--- 251
           L+K++  +K        ++ +W++  K     +FS    +    +   L  A E      
Sbjct: 155 LIKMSCKKKEFEKARGFLNWMWKEGFKP---DVFSYSTVINDLAKTGKLDDALELFDEMS 211

Query: 252 -----------------------HMVALAMMGKL------YINRTSE-----GRLRSSRL 277
                                  H +A+ +  KL      Y N  +      G  +  R+
Sbjct: 212 ERRVAPDVTCYNILIDGFLKEKDHKMAMQLWDKLLEDSSVYPNVKTHNIMISGLSKCGRV 271

Query: 278 DIPIPLNALPVMKVLR--------WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSH 329
           D     + L +   ++        +++S +IH      N   AE +  ++          
Sbjct: 272 D-----DCLKIWDRMKQNEREKDLYTYSSLIHGLCDEGNVDKAESVFNELVERKAFIDVV 326

Query: 330 TYDGFIRAIVSDRGLRNGMEVLKIMQQNN---LKPQDSTIATLSVECSKALELDLAEALL 386
           TY+  +        ++  +E+ +IM+Q N   +   +  I  L +E  K  E  +   L+
Sbjct: 327 TYNTMLGGFCRCGKIKESLELWRIMEQRNSVNIVSYNILIKGL-LENGKIDEATMIWRLM 385

Query: 387 DQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKL-RPDIRTYELLFSLFGNVNAP 445
                  +   +  F+          +A+ +  ++  K    D+  Y  +          
Sbjct: 386 PAKGYAADNTTYGIFIHGLCVNGYVNKALGVMQEVESKGGHLDVYAYASIIDCLCKKRRL 445

Query: 446 YEEGNMFSQVDSAKRINAIEMDMARNN------IQHSHISMKNLL-KALGAEGMIRELIQ 498
            E  N+  ++      + +E++    N      I+ S +S  +LL + +G  G +  ++ 
Sbjct: 446 EEASNLVKEMSK----HGVELNSHVCNALIGGLIRDSRLSDASLLMRGMGKNGCLPTVV- 500

Query: 499 YFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIR 558
                       +YN ++  L EA +   A    K+M   G+ P+  TY+I++      R
Sbjct: 501 ------------SYNILICGLCEAGKFGEASAFVKEMLENGLKPDLKTYSILLGGLCRDR 548

Query: 559 CFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYN 618
             + A  L    ++ G  P  M +  LI  L   G  D+A+ ++  +       +++ YN
Sbjct: 549 KIELALELWHQFLQSGLEPDVMMHNILIHGLCSVGKLDDAMTVMANMEHRNCTANLVTYN 608

Query: 619 TILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAME 670
           T+++   +    +    I   M++  +QPD  + + +  G   C   + A+E
Sbjct: 609 TLMEGYFKVRDSNRATVIWGYMYKMGLQPDIISYNTILKGLCLCHRVSYAIE 660



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 90/514 (17%), Positives = 193/514 (37%), Gaps = 32/514 (6%)

Query: 93  ILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERY 152
           ++N  A++      +E +  M E+ +  +  CY +++    K    + A  L   L E  
Sbjct: 190 VINDLAKTGKLDDALELFDEMSERRVAPDVTCYNILIDGFLKEKDHKMAMQLWDKLLEDS 249

Query: 153 GIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAV 212
            +YP +  +N  +   +K   +       D M      K+  TY+ L+     + N+   
Sbjct: 250 SVYPNVKTHNIMISGLSKCGRVDDCLKIWDRMKQNEREKDLYTYSSLIHGLCDEGNVDKA 309

Query: 213 HEIWEDYIKHYS-LSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGR 271
             ++ + ++  + + + +    +  F R   +K + E  + M     +  +  N   +G 
Sbjct: 310 ESVFNELVERKAFIDVVTYNTMLGGFCRCGKIKESLELWRIMEQRNSVNIVSYNILIKGL 369

Query: 272 LRSSRLDIPIPLNALPVMKVL---RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSS 328
           L + ++D    +  L   K       ++   IH          A  +M +++S G     
Sbjct: 370 LENGKIDEATMIWRLMPAKGYAADNTTYGIFIHGLCVNGYVNKALGVMQEVESKGGHLDV 429

Query: 329 HTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ 388
           + Y   I  +   R L     ++K M ++ ++        L     +   L  A  L+  
Sbjct: 430 YAYASIIDCLCKKRRLEEASNLVKEMSKHGVELNSHVCNALIGGLIRDSRLSDASLLMRG 489

Query: 389 ISR--CTNPKPFS---AFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLF---G 440
           + +  C  P   S        C+     E +  +   +   L+PD++TY +L        
Sbjct: 490 MGKNGCL-PTVVSYNILICGLCEAGKFGEASAFVKEMLENGLKPDLKTYSILLGGLCRDR 548

Query: 441 NVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYF 500
            +    E  + F Q       + +E D+  +NI         L+  L + G + + +   
Sbjct: 549 KIELALELWHQFLQ-------SGLEPDVMMHNI---------LIHGLCSVGKLDDAMTVM 592

Query: 501 CDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSII 557
            + +    T    TYNT++    + ++S+RA  I+  M   G+ P+  +YN ++    + 
Sbjct: 593 ANMEHRNCTANLVTYNTLMEGYFKVRDSNRATVIWGYMYKMGLQPDIISYNTILKGLCLC 652

Query: 558 RCFKSASALVSMMVRDGFYPQTMTYTALIKILLD 591
                A          G +P   T+  L++ +++
Sbjct: 653 HRVSYAIEFFDDARNHGIFPTVYTWNILVRAVVN 686


>gi|297816792|ref|XP_002876279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297322117|gb|EFH52538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 121/585 (20%), Positives = 237/585 (40%), Gaps = 41/585 (7%)

Query: 99  RSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPIL 158
           R   P   +E +    E+    ++  Y L +QA CK   L  A++L+  + E+    P  
Sbjct: 244 REEKPAEALEVFSRAIERGAEPDSLLYSLAVQACCKTLNLAMANSLLREMKEKKLCVPSQ 303

Query: 159 PVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNL-SAVHEIWE 217
             Y S + A  K  +M  A    D M S  +  N V  T L+       +L SA+   ++
Sbjct: 304 ETYTSVILASVKQGNMEDAIRWKDEMVSDGISMNVVAATSLITGHCKNNDLGSALDLFYK 363

Query: 218 DYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLY-INRTSEGRLRSSR 276
              +  S +  +    +  F++  +++ A E  + M +L +   ++ ++   +G L+  +
Sbjct: 364 MENEGPSPNSVTFSVLIERFSKNGEMEKALEFYKKMESLGLTPSVFHVHTIIQGWLKGQK 423

Query: 277 LDIPIPL----------NALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQP 326
            +  + L          N      +L W     +   G+      A +L+ +M+S G+ P
Sbjct: 424 HEEALKLFDESFETGLANVFICNTILSW-----LCKQGKIDK---ATELLRKMESRGIGP 475

Query: 327 SSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALL 386
           +  +Y+  + A    + +     V   M +  LKP + T + L   C K  +      ++
Sbjct: 476 NVVSYNNVMLAHCRKKNMDLARTVFSNMLEKGLKPNNYTYSILIDGCFKNHDEQNVLEVV 535

Query: 387 DQISRC---TNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIR--TYELLFSLFGN 441
           +Q++      N   +   +     + +  +A ++ A M ++ R  +   +Y  +   F  
Sbjct: 536 NQMTSSNIEVNGVVYQTIINGLCKVGQTSKARELLANMIEEKRFCVSCMSYNSIIDGF-- 593

Query: 442 VNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFC 501
                +EG M   V       A   +M  N I  + I+  +L+  L     + + ++   
Sbjct: 594 ----IKEGEMDYAV-------AAYEEMCANGISPNVITYTSLMDGLCKNNRMDQALEMRD 642

Query: 502 DSK---TPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIR 558
           + K     L  P Y  ++H   +      A  +F ++   G+ P+   YN +I     + 
Sbjct: 643 EMKNKGVKLDIPAYGALIHGFCKKSNMESASALFSELLEEGLNPSQPVYNSLISGFRNLG 702

Query: 559 CFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYN 618
              +A  L   M++DG      TYT LI  LL  G+   A +L   +   G+  D ++Y 
Sbjct: 703 NMVAALDLYKKMLKDGLRCDLGTYTTLIDGLLKEGNLILASDLYTEMQAVGLVPDEIMYT 762

Query: 619 TILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
            I+    +KG+   +  + E+M +N V P+    + V +G+   G
Sbjct: 763 VIVNGLSKKGQFVKVVKMFEEMKKNNVTPNVLIYNAVIAGHYREG 807



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 123/633 (19%), Positives = 256/633 (40%), Gaps = 72/633 (11%)

Query: 120 LNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANL 179
           +N++ +  ++ A  K    + A +++  + E  G+ P +P  N  L A  + +S+  A  
Sbjct: 160 VNSRAFNYLLNAYSKDRQTDYAVDIVNQMLE-LGVIPFVPYVNRTLSALVQRNSITEAKE 218

Query: 180 CLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH--------YSLSIFSLR 231
               M +  V  +  T   L++ ++ ++  +   E++   I+         YSL++ +  
Sbjct: 219 LYSRMVAIGVDGDNGTTQLLMRASLREEKPAEALEVFSRAIERGAEPDSLLYSLAVQACC 278

Query: 232 K---FVWSFTRLRDLKS------AYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIP 282
           K      + + LR++K       + ET   ++  ++      N     R +   +   I 
Sbjct: 279 KTLNLAMANSLLREMKEKKLCVPSQETYTSVILASVKQG---NMEDAIRWKDEMVSDGIS 335

Query: 283 LNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDR 342
           +N +          + +I    +  + G A  L  +M++ G  P+S T+   I     + 
Sbjct: 336 MNVVAA--------TSLITGHCKNNDLGSALDLFYKMENEGPSPNSVTFSVLIERFSKNG 387

Query: 343 GLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFL 402
            +   +E  K M+   L P    + T+     K  + + A  L D+         F   L
Sbjct: 388 EMEKALEFYKKMESLGLTPSVFHVHTIIQGWLKGQKHEEALKLFDE--------SFETGL 439

Query: 403 A---ACDTM-------DKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNM 451
           A    C+T+        K ++A ++  KM  + + P++ +Y  +        A   + NM
Sbjct: 440 ANVFICNTILSWLCKQGKIDKATELLRKMESRGIGPNVVSYNNVML------AHCRKKNM 493

Query: 452 FSQVDSAKRI--NAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGT 509
               D A+ +  N +E  +  NN  +S I +    K    + ++ E++     S   +  
Sbjct: 494 ----DLARTVFSNMLEKGLKPNNYTYS-ILIDGCFKNHDEQNVL-EVVNQMTSSNIEVNG 547

Query: 510 PTYNTVLHSLVEAQESHRAMEIFKQM----KTCGIPPNAATYNIMIDCCSIIRCFKSASA 565
             Y T+++ L +  ++ +A E+   M    + C    +  +YN +ID          A A
Sbjct: 548 VVYQTIINGLCKVGQTSKARELLANMIEEKRFC---VSCMSYNSIIDGFIKEGEMDYAVA 604

Query: 566 LVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKAC 625
               M  +G  P  +TYT+L+  L      D+AL + D +  +G+  D+  Y  ++   C
Sbjct: 605 AYEEMCANGISPNVITYTSLMDGLCKNNRMDQALEMRDEMKNKGVKLDIPAYGALIHGFC 664

Query: 626 EKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL---SMRMLCE 682
           +K  ++    +  ++ +  + P     + + SG+ N G   +A++  + +    +R    
Sbjct: 665 KKSNMESASALFSELLEEGLNPSQPVYNSLISGFRNLGNMVAALDLYKKMLKDGLRCDLG 724

Query: 683 EVSTLEEKRSDFEDLILAEDSEAESRILQFCED 715
             +TL +      +LILA D   E + +    D
Sbjct: 725 TYTTLIDGLLKEGNLILASDLYTEMQAVGLVPD 757



 Score = 43.1 bits (100), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 54/275 (19%), Positives = 107/275 (38%), Gaps = 5/275 (1%)

Query: 93  ILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERY 152
           +++ C ++ D   V+E    M    I +N   Y  ++  LCK G   +A  L+  + E  
Sbjct: 518 LIDGCFKNHDEQNVLEVVNQMTSSNIEVNGVVYQTIINGLCKVGQTSKARELLANMIEEK 577

Query: 153 GIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAV 212
                   YNS +    K   M +A    + M +  +  N +TYT L+        +   
Sbjct: 578 RFCVSCMSYNSIIDGFIKEGEMDYAVAAYEEMCANGISPNVITYTSLMDGLCKNNRMDQA 637

Query: 213 HEIWEDYI-KHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMM-GKLYINRTSEG 270
            E+ ++   K   L I +    +  F +  +++SA      ++   +   +   N    G
Sbjct: 638 LEMRDEMKNKGVKLDIPAYGALIHGFCKKSNMESASALFSELLEEGLNPSQPVYNSLISG 697

Query: 271 RLRSSRLDIPIPLNALPVMKVLR---WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPS 327
                 +   + L    +   LR    +++ +I    +  N  LA  L  +MQ++GL P 
Sbjct: 698 FRNLGNMVAALDLYKKMLKDGLRCDLGTYTTLIDGLLKEGNLILASDLYTEMQAVGLVPD 757

Query: 328 SHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQ 362
              Y   +  +         +++ + M++NN+ P 
Sbjct: 758 EIMYTVIVNGLSKKGQFVKVVKMFEEMKKNNVTPN 792


>gi|297806463|ref|XP_002871115.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316952|gb|EFH47374.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 942

 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 87/463 (18%), Positives = 176/463 (38%), Gaps = 64/463 (13%)

Query: 288 VMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNG 347
           + K  R  F  ++   GR  +   A +   +M++ G+ P+S  Y   I A    R +   
Sbjct: 305 INKPSRTEFGLMVKFYGRRGDMHRARETFERMRARGITPTSRIYTSLIHAYAVGRDMEEA 364

Query: 348 MEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ---ISRCTNPKPFSAFL-A 403
           +  ++ M++  ++    T + +    SKA   + A+   D+   I +  N   +   + A
Sbjct: 365 LSCVRKMKEEGIEMSLVTYSVIVGGFSKAGNAEAADHWFDEAKRIHKTLNASIYGKIIYA 424

Query: 404 ACDT-----------------MDKP-----------------ERAIKIFAKMRQ-KLRPD 428
            C T                 +D P                 ++ + +F ++++    P 
Sbjct: 425 HCQTCNMERAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEKKGLIVFKRLKECGFTPT 484

Query: 429 IRTYELLFSLFGNVN----------APYEEG------------NMFSQVDSAKRINAIEM 466
           + TY  L +L+  V              EEG            N F ++       A+  
Sbjct: 485 VVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFE 544

Query: 467 DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNT---VLHSLVEAQ 523
           DM +  ++   I   N++ A    G +   IQ   + +     PT  T   +++   ++ 
Sbjct: 545 DMVKEGMKPDVILYNNIIAAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIINGFAKSG 604

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
           +  R++E+F  M+ CG  P   T+N +I+     R  + A  ++  M   G      TYT
Sbjct: 605 DMRRSLEVFDMMRRCGCVPTVHTFNALINGLVEKRQMEKAVEILDEMTLAGVSANEHTYT 664

Query: 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
            +++     GD  +A      +  EG+  D+  Y  +LK  C+ GR+     + ++M   
Sbjct: 665 KIMQGYASVGDTGKAFEYFTRLQNEGLEVDIFTYEALLKACCKSGRMQSALAVTKEMSAR 724

Query: 644 KVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
            +  +    + +  G+   G    A + +Q +    +  ++ T
Sbjct: 725 NIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHT 767



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 91/399 (22%), Positives = 166/399 (41%), Gaps = 40/399 (10%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTY----DGFIRAIVSDRGLRNGMEVL 351
           +  +I+A  +T N   AE L+ +M+  G+      Y    DG+   +V+D   + G+ V 
Sbjct: 418 YGKIIYAHCQTCNMERAEALVREMEEEGIDAPIAIYHTMMDGY--TMVADE--KKGLIVF 473

Query: 352 KIMQQNNLKPQDSTIA------TLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAAC 405
           K +++    P   T        T   + SKALE+     ++ +     N K +S  +   
Sbjct: 474 KRLKECGFTPTVVTYGCLINLYTKVGKISKALEVS---RVMKEEGVKHNLKTYSMMINGF 530

Query: 406 DTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAI 464
             +     A  +F  M ++ ++PD+  Y  + + F  +      GNM   + + K     
Sbjct: 531 VKLKDWANAFAVFEDMVKEGMKPDVILYNNIIAAFCGM------GNMDRAIQTVK----- 579

Query: 465 EMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPT---YNTVLHSLVE 521
           EM   R+  + +  +   ++      G +R  ++ F   +     PT   +N +++ LVE
Sbjct: 580 EMQKLRH--RPTTRTFMPIINGFAKSGDMRRSLEVFDMMRRCGCVPTVHTFNALINGLVE 637

Query: 522 AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMT 581
            ++  +A+EI  +M   G+  N  TY  ++   + +     A    + +  +G      T
Sbjct: 638 KRQMEKAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLEVDIFT 697

Query: 582 YTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMH 641
           Y AL+K     G    AL +   +S   IP +  +YN ++     +G +     +I+QM 
Sbjct: 698 YEALLKACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMK 757

Query: 642 QNKVQPDPSTCHFVFSGYVNCGFHNSA------MEALQV 674
           +  V+PD  T     S     G  N A      MEAL V
Sbjct: 758 KEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGV 796



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 62/277 (22%), Positives = 121/277 (43%), Gaps = 14/277 (5%)

Query: 412 ERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           E A+    KM+++ +   + TY ++   F          + F   D AKRI+        
Sbjct: 362 EEALSCVRKMKEEGIEMSLVTYSVIVGGFSKAGNAEAADHWF---DEAKRIHKTLNASIY 418

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAME 530
             I ++H    N+ +A   E ++RE+ +   D+   +    Y+T++       +  + + 
Sbjct: 419 GKIIYAHCQTCNMERA---EALVREMEEEGIDAPIAI----YHTMMDGYTMVADEKKGLI 471

Query: 531 IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590
           +FK++K CG  P   TY  +I+  + +     A  +  +M  +G      TY+ +I   +
Sbjct: 472 VFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFV 531

Query: 591 DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650
              D+  A  + + +  EG+  DV+LYN I+   C  G +D     +++M + + +P   
Sbjct: 532 KLKDWANAFAVFEDMVKEGMKPDVILYNNIIAAFCGMGNMDRAIQTVKEMQKLRHRPTTR 591

Query: 651 TCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTL 687
           T   + +G+   G       +L+V  M   C  V T+
Sbjct: 592 TFMPIINGFAKSG---DMRRSLEVFDMMRRCGCVPTV 625



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 116/594 (19%), Positives = 230/594 (38%), Gaps = 73/594 (12%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           + LM++   + G +  A      +  R GI P   +Y S + A A    M  A  C+  M
Sbjct: 313 FGLMVKFYGRRGDMHRARETFERMRAR-GITPTSRIYTSLIHAYAVGRDMEEALSCVRKM 371

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK--HYSLSIFSLRKFVWSFTRLRD 242
               +  + VTY+ ++       N  A    W D  K  H +L+     K +++  +  +
Sbjct: 372 KEEGIEMSLVTYSVIVGGFSKAGNAEAADH-WFDEAKRIHKTLNASIYGKIIYAHCQTCN 430

Query: 243 LKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHA 302
           ++ A   ++ M               EG      +D PI +            +  ++  
Sbjct: 431 MERAEALVREM-------------EEEG------IDAPIAI------------YHTMMDG 459

Query: 303 CGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQ 362
                +      +  +++  G  P+  TY   I        +   +EV ++M++  +K  
Sbjct: 460 YTMVADEKKGLIVFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVK-- 517

Query: 363 DSTIATLSVECSKALEL-DLAEALL---DQISRCTNPKP--FSAFLAACDTMDKPERAIK 416
              + T S+  +  ++L D A A     D +     P    ++  +AA   M   +RAI+
Sbjct: 518 -HNLKTYSMMINGFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIIAAFCGMGNMDRAIQ 576

Query: 417 IFAKMRQ-KLRPDIRTYELLFSLF---GNVNAPYEEGNMFSQ---VDSAKRINAI----- 464
              +M++ + RP  RT+  + + F   G++    E  +M  +   V +    NA+     
Sbjct: 577 TVKEMQKLRHRPTTRTFMPIINGFAKSGDMRRSLEVFDMMRRCGCVPTVHTFNALINGLV 636

Query: 465 -------------EMDMARNNI-QHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP 510
                        EM +A  +  +H++  +     ++G  G   E      +    +   
Sbjct: 637 EKRQMEKAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLEVDIF 696

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TY  +L +  ++     A+ + K+M    IP N+  YNI+ID  +       A+ L+  M
Sbjct: 697 TYEALLKACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQM 756

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
            ++G  P   TYT+ I      GD + A   ++ +   G+  ++  Y T++K        
Sbjct: 757 KKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGWARASLP 816

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEV 684
           +      E+M    ++PD +  H + +  ++     S  EA     +  +C+E+
Sbjct: 817 EKALSCYEEMKAVGLKPDKAVYHCLLTSLLS---RASIAEAYIYSGVMTICKEM 867



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 87/473 (18%), Positives = 183/473 (38%), Gaps = 84/473 (17%)

Query: 120 LNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANL 179
           LN   Y  ++ A C+   +E A  L+  + E  GI   + +Y++ +     +       +
Sbjct: 413 LNASIYGKIIYAHCQTCNMERAEALVREM-EEEGIDAPIAIYHTMMDGYTMVADEKKGLI 471

Query: 180 CLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEI----WEDYIKHYSLSIFSLRKFVW 235
               +         VTY  L+ L      +S   E+     E+ +KH +L  +S+   + 
Sbjct: 472 VFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKH-NLKTYSM--MIN 528

Query: 236 SFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWS 295
            F +L+D  +A+   + MV   M   + +                               
Sbjct: 529 GFVKLKDWANAFAVFEDMVKEGMKPDVIL------------------------------- 557

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           ++++I A     N   A Q + +MQ L  +P++ T+   I        +R  +EV  +M+
Sbjct: 558 YNNIIAAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIINGFAKSGDMRRSLEVFDMMR 617

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQISRC---TNPKPFSAFLAACDTMDKPE 412
           +    P   T   L     +  +++ A  +LD+++      N   ++  +    ++    
Sbjct: 618 RCGCVPTVHTFNALINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTG 677

Query: 413 RAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471
           +A + F +++ + L  DI TYE L      + A  + G M S +   K ++A   ++ RN
Sbjct: 678 KAFEYFTRLQNEGLEVDIFTYEAL------LKACCKSGRMQSALAVTKEMSA--RNIPRN 729

Query: 472 NIQHSHI-----------SMKNLLKALGAEGMIRELIQY--FCDSKTPLG---------- 508
           +  ++ +              +L++ +  EG+  ++  Y  F  + +  G          
Sbjct: 730 SFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTIE 789

Query: 509 ----------TPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI 551
                       TY T++     A    +A+  +++MK  G+ P+ A Y+ ++
Sbjct: 790 EMEALGVKPNIKTYTTLIKGWARASLPEKALSCYEEMKAVGLKPDKAVYHCLL 842



 Score = 47.8 bits (112), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 55/109 (50%), Gaps = 1/109 (0%)

Query: 93  ILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERY 152
           +L  C +S      +   + M  + I  N+  Y +++    + G + EA++LI  + ++ 
Sbjct: 701 LLKACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQM-KKE 759

Query: 153 GIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLK 201
           G+ P +  Y SF+ AC+K   M  A   ++ M++  V  N  TYT L+K
Sbjct: 760 GVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIK 808



 Score = 44.3 bits (103), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 61/356 (17%), Positives = 142/356 (39%), Gaps = 40/356 (11%)

Query: 106 VMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGE--RYGIYPILPVYNS 163
            +E  R+M+E+ +  N K Y +M+    K   L++ +N      +  + G+ P + +YN+
Sbjct: 504 ALEVSRVMKEEGVKHNLKTYSMMINGFVK---LKDWANAFAVFEDMVKEGMKPDVILYNN 560

Query: 164 FLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHY 223
            + A   + +M  A   +  M          T+  ++       ++    E++ D ++  
Sbjct: 561 IIAAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIINGFAKSGDMRRSLEVF-DMMRRC 619

Query: 224 SL--SIFSLRKFVWSFTRLRDLKSAYETL-----------QHMVALAMMGKLYINRTSEG 270
               ++ +    +      R ++ A E L           +H     M G   +  T + 
Sbjct: 620 GCVPTVHTFNALINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKA 679

Query: 271 -----RLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQ 325
                RL++  L++ I            +++  ++ AC ++     A  +  +M +  + 
Sbjct: 680 FEYFTRLQNEGLEVDI------------FTYEALLKACCKSGRMQSALAVTKEMSARNIP 727

Query: 326 PSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEAL 385
            +S  Y+  I        +    ++++ M++  +KP   T  +    CSKA +++ A   
Sbjct: 728 RNSFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQT 787

Query: 386 LDQISRC---TNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFS 437
           ++++       N K ++  +        PE+A+  + +M+   L+PD   Y  L +
Sbjct: 788 IEEMEALGVKPNIKTYTTLIKGWARASLPEKALSCYEEMKAVGLKPDKAVYHCLLT 843


>gi|224103543|ref|XP_002313097.1| predicted protein [Populus trichocarpa]
 gi|222849505|gb|EEE87052.1| predicted protein [Populus trichocarpa]
          Length = 751

 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 100/205 (48%), Gaps = 3/205 (1%)

Query: 467 DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQ 523
           +M  + +  +  S   L++   A G +   +++F + +     P   TYNTV+ +  + +
Sbjct: 193 EMIASGVSLNVFSYNILIRGFCAAGNLEMGLRFFEEMERNRCLPNVVTYNTVIGAYCKLK 252

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
               A ++ + M   G+ PN  TYN++I+    +   +  S +++ M R GF P  +TY 
Sbjct: 253 RIDEAFKLLRSMGLEGLEPNLLTYNMVINGLCRVGRIEETSGVLAEMDRKGFAPDGVTYN 312

Query: 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
            L+      G+F +AL L   +   G+P DV+ Y +++   C+ G ++      +QMH  
Sbjct: 313 TLVNGYCKVGNFHQALVLHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVR 372

Query: 644 KVQPDPSTCHFVFSGYVNCGFHNSA 668
            ++P+  T   + +G+   GF + A
Sbjct: 373 GLRPNGVTYTSLINGFSQKGFMDEA 397



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 88/342 (25%), Positives = 143/342 (41%), Gaps = 20/342 (5%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ VI A  + +    A +L+  M   GL+P+  TY+  I  +     +     VL  M
Sbjct: 240 TYNTVIGAYCKLKRIDEAFKLLRSMGLEGLEPNLLTYNMVINGLCRVGRIEETSGVLAEM 299

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKP--- 411
            +    P   T  TL     K      A  L  ++ R   P     + +  +TM K    
Sbjct: 300 DRKGFAPDGVTYNTLVNGYCKVGNFHQALVLHSEMLRNGLPPDVVTYTSLINTMCKAGNL 359

Query: 412 ERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
            RA++ F +M  + LRP+  TY  L      +N   ++G M    D A RI     +M R
Sbjct: 360 NRAMEFFDQMHVRGLRPNGVTYTSL------INGFSQKGFM----DEAYRIWD---EMIR 406

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHR 527
           +    + ++   LL      G + E I      +    +P   +Y+T++      QE  R
Sbjct: 407 SGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTIIAGFCRYQELDR 466

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A ++  +M   G+ P+A TY+ +I      R    A  L   M+     P   TYT+LI 
Sbjct: 467 AFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLFQEMLNKSLLPDEFTYTSLIN 526

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
                GD +EALNL D +  +G   D + YN ++    ++ R
Sbjct: 527 GYCKEGDLNEALNLHDEMIKKGFLPDTVTYNVLINGLNKQAR 568



 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 79/350 (22%), Positives = 144/350 (41%), Gaps = 45/350 (12%)

Query: 311 LAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLS 370
            AE++  +M + G+  +  +Y+  IR   +   L  G+   + M++N   P   T  T+ 
Sbjct: 186 FAEKVYREMIASGVSLNVFSYNILIRGFCAAGNLEMGLRFFEEMERNRCLPNVVTYNTV- 244

Query: 371 VECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMR-QKLRPDI 429
                                          + A   + + + A K+   M  + L P++
Sbjct: 245 -------------------------------IGAYCKLKRIDEAFKLLRSMGLEGLEPNL 273

Query: 430 RTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGA 489
            TY ++ +    V    E   + +++D   R       +  N + + +  + N  +AL  
Sbjct: 274 LTYNMVINGLCRVGRIEETSGVLAEMD---RKGFAPDGVTYNTLVNGYCKVGNFHQALVL 330

Query: 490 EG-MIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYN 548
              M+R        +  P    TY ++++++ +A   +RAME F QM   G+ PN  TY 
Sbjct: 331 HSEMLR--------NGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYT 382

Query: 549 IMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLE 608
            +I+  S       A  +   M+R GF P  +TY AL+      G  +EA+ LL  +  +
Sbjct: 383 SLINGFSQKGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGK 442

Query: 609 GIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
           G+  DV+ Y+TI+   C    +D    +  +M +  V PD  T   +  G
Sbjct: 443 GLSPDVVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQG 492



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 70/311 (22%), Positives = 133/311 (42%), Gaps = 44/311 (14%)

Query: 384 ALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLF--- 439
           A+LD I RC  P  F               A K++ +M    +  ++ +Y +L   F   
Sbjct: 172 AILDSIVRCRKPVIF---------------AEKVYREMIASGVSLNVFSYNILIRGFCAA 216

Query: 440 GNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMK------NLLKALGAEGMI 493
           GN+    E G  F   +  +R   +   +  N +  ++  +K       LL+++G EG+ 
Sbjct: 217 GNL----EMGLRF--FEEMERNRCLPNVVTYNTVIGAYCKLKRIDEAFKLLRSMGLEGLE 270

Query: 494 RELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC 553
             L+             TYN V++ L           +  +M   G  P+  TYN +++ 
Sbjct: 271 PNLL-------------TYNMVINGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNTLVNG 317

Query: 554 CSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHD 613
              +  F  A  L S M+R+G  P  +TYT+LI  +   G+ + A+   D + + G+  +
Sbjct: 318 YCKVGNFHQALVLHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPN 377

Query: 614 VLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
            + Y +++    +KG +D    I ++M ++   P   T + + +G+   G    A+  L+
Sbjct: 378 GVTYTSLINGFSQKGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLR 437

Query: 674 VLSMRMLCEEV 684
            +  + L  +V
Sbjct: 438 GMEGKGLSPDV 448



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 107/540 (19%), Positives = 215/540 (39%), Gaps = 47/540 (8%)

Query: 137 YLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHS-MVHANLCLDLMDSRMVGKNEVT 195
           ++E+A N++  L +  G  P +  YN+ L +  +    ++ A      M +  V  N  +
Sbjct: 147 FIEKALNIVD-LAKLNGFMPGVLSYNAILDSIVRCRKPVIFAEKVYREMIASGVSLNVFS 205

Query: 196 YTELLKLAVWQKNLSAVHEIWEDYIKHYSL-SIFSLRKFVWSFTRLRDLKSAYETLQHMV 254
           Y  L++      NL      +E+  ++  L ++ +    + ++ +L+ +  A++ L+ M 
Sbjct: 206 YNILIRGFCAAGNLEMGLRFFEEMERNRCLPNVVTYNTVIGAYCKLKRIDEAFKLLRSMG 265

Query: 255 ALAMMGKLYI-NRTSEGRLRSSRLDIPIPLNALPVMKVLR---WSFSDVIHACGRTQNSG 310
              +   L   N    G  R  R++    + A    K       +++ +++   +  N  
Sbjct: 266 LEGLEPNLLTYNMVINGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNTLVNGYCKVGNFH 325

Query: 311 LAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLS 370
            A  L  +M   GL P   TY   I  +     L   ME    M    L+P   T  +L 
Sbjct: 326 QALVLHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLI 385

Query: 371 VECSKALELDLAEALLDQISRCTNPKP---FSAFLAACDTMDKPERAIKIFAKMRQK-LR 426
              S+   +D A  + D++ R   P     ++A L       + E AI +   M  K L 
Sbjct: 386 NGFSQKGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLS 445

Query: 427 PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKA 486
           PD+ +Y  + + F            + ++D A ++NA   +M    +    I+  +L++ 
Sbjct: 446 PDVVSYSTIIAGFCR----------YQELDRAFQMNA---EMVEKGVSPDAITYSSLIQG 492

Query: 487 LGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPN 543
           L  +  + E    F +       P   TY ++++   +  + + A+ +  +M   G  P+
Sbjct: 493 LCEQRRLNEACDLFQEMLNKSLLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGFLPD 552

Query: 544 AATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLD 603
             TYN++I+  +     + A  L+  +  D   P  +TY  LI+   D  +F   + L  
Sbjct: 553 TVTYNVLINGLNKQARTREAKRLLLKLFYDESIPNGITYDTLIESCSDI-EFKSVVAL-- 609

Query: 604 LVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
                            +K  C KG ++  + + E M +   +P+ +  + +  G+   G
Sbjct: 610 -----------------IKGFCMKGLMNEADQVFESMIKRNQKPNEAVYNVIIHGHCRDG 652



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 116/539 (21%), Positives = 200/539 (37%), Gaps = 89/539 (16%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y +++  LC+ G +EE S ++  + +R G  P    YN+ +    K+ +   A +    M
Sbjct: 276 YNMVINGLCRVGRIEETSGVLAEM-DRKGFAPDGVTYNTLVNGYCKVGNFHQALVLHSEM 334

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWED-YIKHYSLSIFSLRKFVWSFTRLRDL 243
               +  + VTYT L+       NL+   E ++  +++    +  +    +  F++   +
Sbjct: 335 LRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQKGFM 394

Query: 244 KSAYETLQHMVALAMMGKLYI-NRTSEGRLRSSRLDIPIPLNALPVMKVLR---WSFSDV 299
             AY     M+       +   N    G   S R++  I L      K L     S+S +
Sbjct: 395 DEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTI 454

Query: 300 IHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNL 359
           I    R Q    A Q+  +M   G+ P + TY   I+ +   R L    ++ + M   +L
Sbjct: 455 IAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLFQEMLNKSL 514

Query: 360 KPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFA 419
            P + T  +L     K  +L+ A  L D++ +         FL    T +     +   A
Sbjct: 515 LPDEFTYTSLINGYCKEGDLNEALNLHDEMIK-------KGFLPDTVTYNVLINGLNKQA 567

Query: 420 KMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHIS 479
           + R+  R       LL  LF + + P                N I  D    +   S I 
Sbjct: 568 RTREAKR-------LLLKLFYDESIP----------------NGITYDTLIESC--SDIE 602

Query: 480 MKN---LLKALGAEGMIRELIQYF---CDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFK 533
            K+   L+K    +G++ E  Q F              YN ++H        H+A +++K
Sbjct: 603 FKSVVALIKGFCMKGLMNEADQVFESMIKRNQKPNEAVYNVIIHGHCRDGNVHKAHKLYK 662

Query: 534 QMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYG 593
           +                                   MV  GF P T+T  AL+K L   G
Sbjct: 663 E-----------------------------------MVDFGFIPHTVTIIALVKALYSEG 687

Query: 594 DFDEALNLLDLVSLEGIPHDVLLYNTILKKAC-----EKGRIDVIEFIIEQMHQNKVQP 647
             DE LNL+    +  I     L +  L KA      ++G ID +  ++ +M ++   P
Sbjct: 688 -MDEQLNLV----IRDILRSCKLSDAELSKALVQINHKEGNIDAVFNLLTEMAKDGFLP 741



 Score = 42.7 bits (99), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 29/141 (20%), Positives = 67/141 (47%), Gaps = 5/141 (3%)

Query: 543 NAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGD---FDEAL 599
           ++A +++++  CS +   + A  +V +   +GF P  ++Y A++  ++       F E +
Sbjct: 131 SSAVFDLVVKSCSYLNFIEKALNIVDLAKLNGFMPGVLSYNAILDSIVRCRKPVIFAEKV 190

Query: 600 NLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
               + S  G+  +V  YN +++  C  G +++     E+M +N+  P+  T + V   Y
Sbjct: 191 YREMIAS--GVSLNVFSYNILIRGFCAAGNLEMGLRFFEEMERNRCLPNVVTYNTVIGAY 248

Query: 660 VNCGFHNSAMEALQVLSMRML 680
                 + A + L+ + +  L
Sbjct: 249 CKLKRIDEAFKLLRSMGLEGL 269


>gi|357134934|ref|XP_003569069.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Brachypodium distachyon]
          Length = 642

 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 75/345 (21%), Positives = 143/345 (41%), Gaps = 19/345 (5%)

Query: 318 QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKAL 377
            M+  G++P+ +TY+  I+A+  +  +     +L  M +   +P + +  T+     K  
Sbjct: 152 NMRKAGVEPNVYTYNLLIKALCQNDRVGAARRMLDEMARKGCRPDEVSHTTIISALCKLD 211

Query: 378 ELDLAEALLDQISRCTNPKPFSAFL-AACDTMDKPERAIKIFAKMRQKLRPDIRTYELLF 436
            LD A  +L +++       ++A + A C      E  + +   + + LRPD   Y    
Sbjct: 212 RLDEARGILAEMTPVG--ASYNAVVHALCGQFRMREVFLVVDEMVHRGLRPDTVAYT--- 266

Query: 437 SLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIREL 496
           S+ G           F +    +   AI   M       +  +   L+K    +G + + 
Sbjct: 267 SIVG----------AFCKARELRMACAILARMVTEGCVPNVQTFTVLVKGFFDDGKVHDA 316

Query: 497 I---QYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC 553
           +    +         T +YN ++  L    +  RA+ +F  M      P+  TY+ +ID 
Sbjct: 317 LGMWNWMVAEGWAPSTISYNVLIRGLCHIGDLKRALFVFSCMGKSDCLPDVRTYSTLIDG 376

Query: 554 CSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHD 613
            S       A ++ + M   G  P  + YT ++ +L     FD+A NL+D +SLE  P +
Sbjct: 377 FSKAGDLDVAMSIWNDMTNAGCKPNVVVYTNMVDVLCKKVMFDQAENLIDKMSLENCPPN 436

Query: 614 VLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
            L +NT+++  C+ GR      +   M +    P+  T + +  G
Sbjct: 437 TLTFNTLIRSLCDLGRAGRALNVFHGMRRYGCPPNDRTYNELLHG 481



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 125/611 (20%), Positives = 232/611 (37%), Gaps = 93/611 (15%)

Query: 59  IVDALCRGERSRAS-HLLLNLGHAHHSLGADD-----FFHILNYCARSPDPLFVMETWRM 112
           +V A+C   R+ A+   L     A H LG        + H+L+   R      V+  +  
Sbjct: 93  LVAAICAFARAGAADRALKTFYRARHDLGCAAPTVRVYNHLLDALLRENLVAAVVPVYDN 152

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
           M +  +  N   Y L+++ALC+   +  A  ++  +  R G  P    + + + A  KL 
Sbjct: 153 MRKAGVEPNVYTYNLLIKALCQNDRVGAARRMLDEMA-RKGCRPDEVSHTTIISALCKLD 211

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSL--SIFSL 230
            +  A   L  M    VG    +Y  ++     Q  +  V  + ++ + H  L     + 
Sbjct: 212 RLDEARGILAEMTP--VG---ASYNAVVHALCGQFRMREVFLVVDEMV-HRGLRPDTVAY 265

Query: 231 RKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMK 290
              V +F + R+L+ A   L  MV             +EG          +P N      
Sbjct: 266 TSIVGAFCKARELRMACAILARMV-------------TEG---------CVP-NVQTFTV 302

Query: 291 VLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEV 350
           +++  F D     G+  +   A  +   M + G  PS+ +Y+  IR +     L+  + V
Sbjct: 303 LVKGFFDD-----GKVHD---ALGMWNWMVAEGWAPSTISYNVLIRGLCHIGDLKRALFV 354

Query: 351 LKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDK 410
              M +++  P   T +TL    SKA +LD+A ++ + ++            A C    K
Sbjct: 355 FSCMGKSDCLPDVRTYSTLIDGFSKAGDLDVAMSIWNDMTN-----------AGC----K 399

Query: 411 PERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           P   + ++  M   L   +                     MF Q +     N I+  M+ 
Sbjct: 400 PN--VVVYTNMVDVLCKKV---------------------MFDQAE-----NLID-KMSL 430

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSK---TPLGTPTYNTVLHSLVEAQESHR 527
            N   + ++   L+++L   G     +  F   +    P    TYN +LH L        
Sbjct: 431 ENCPPNTLTFNTLIRSLCDLGRAGRALNVFHGMRRYGCPPNDRTYNELLHGLFREGNCED 490

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A+ +  +M   G   +  +YN  I     +R  K A  L+  M+  G  P   T+ A+I 
Sbjct: 491 ALRMLTEMLNHGFELSLVSYNTTISGLCQMRMIKEAMILLGRMIIQGIQPDAFTFNAIIH 550

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
                G+   A  +L  +     P +++ Y +++   C + ++D     + +M    + P
Sbjct: 551 AYCKEGNVRAAAWMLGRMDAVNCPRNIVAYTSLMSGLCSQHKLDDAMVYLLKMLYEGICP 610

Query: 648 DPSTCHFVFSG 658
           + +T + +  G
Sbjct: 611 NEATWNVLVRG 621


>gi|357113916|ref|XP_003558747.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Brachypodium distachyon]
          Length = 651

 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 90/396 (22%), Positives = 156/396 (39%), Gaps = 26/396 (6%)

Query: 293 RWSFSDVI------HACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRN 346
           R  F DV+       A  R  +   A  L+  M S G++P   TY+  ++ ++ +     
Sbjct: 188 RCVFPDVVTHNVMVDARFRAGDVEAAMALIDSMVSKGIKPGLVTYNSVLKGLLRNGRWDK 247

Query: 347 GMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI-SRCTNPK--PFSAFLA 403
             EV + M    + P   +   L     +A EL+ A     ++  R   P    FS  + 
Sbjct: 248 AREVFRAMDACGVAPDVRSFNMLIGGFCRAGELEEALRFYKEMRGRRVTPDVVSFSCLIG 307

Query: 404 ACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRIN 462
                 + + A +   +MR+  L PD   Y ++   F       E          A R+ 
Sbjct: 308 LFTRRGEMDHAAEYLREMREFGLMPDGVIYTMVIGGFCRAGLMLE----------ALRVR 357

Query: 463 AIEMDMARNNIQHSHISMKNLLKALGAEGMI---RELIQYFCDSKTPLGTPTYNTVLHSL 519
               +M         ++   LL  L  E  +    EL+    +   P    T+ T++H  
Sbjct: 358 D---EMVAFGCLPDVVTYNTLLNGLCKERRLSDAEELLNEMKERGVPPDLCTFTTLIHGY 414

Query: 520 VEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQT 579
                  +A++ F  +    + P+  TYN +ID          A+ L   M     +P  
Sbjct: 415 CRDGNIEKALQFFDTISDQRLRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFPNH 474

Query: 580 MTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQ 639
           +TY+ LI    + G  D A   LD +  +GI  +++ YN+I+K  C  G +   +  + +
Sbjct: 475 VTYSILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPK 534

Query: 640 MHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
           M  +KV PD  T + +  GYV  G  + A   L+++
Sbjct: 535 MRHDKVMPDLITYNTLIHGYVKEGKMHEAFNLLKIM 570



 Score = 82.8 bits (203), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 124/574 (21%), Positives = 200/574 (34%), Gaps = 90/574 (15%)

Query: 99  RSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPIL 158
           R+  P    + +R++      +N     +M+ + CK     E   +I  + E+  ++P +
Sbjct: 136 RAGWPHLTADAYRLVLSSNSEVNTYTLNIMVHSYCKTLQFGEVDTVISEM-EKRCVFPDV 194

Query: 159 PVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWED 218
             +N  + A  +   +  A   +D M S+ +    VTY  +LK  +         E++  
Sbjct: 195 VTHNVMVDARFRAGDVEAAMALIDSMVSKGIKPGLVTYNSVLKGLLRNGRWDKAREVFRA 254

Query: 219 YIK-HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRL 277
                 +  + S    +  F R  +L+ A    + M                 R R    
Sbjct: 255 MDACGVAPDVRSFNMLIGGFCRAGELEEALRFYKEM-----------------RGRRVTP 297

Query: 278 DIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTY----DG 333
           D+               SFS +I    R      A + + +M+  GL P    Y     G
Sbjct: 298 DV--------------VSFSCLIGLFTRRGEMDHAAEYLREMREFGLMPDGVIYTMVIGG 343

Query: 334 FIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT 393
           F RA +    LR    V   M      P   T  TL     K   L  AE LL+++    
Sbjct: 344 FCRAGLMLEALR----VRDEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEELLNEMKERG 399

Query: 394 NPKPFSAFLAACDTMDKP---ERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEG 449
            P     F        +    E+A++ F  +  Q+LRPDI TY  L              
Sbjct: 400 VPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNTLID------------ 447

Query: 450 NMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGT 509
            M  Q D  K  N +  DM    I  +H+                               
Sbjct: 448 GMCRQGDLGK-ANELWDDMHSREIFPNHV------------------------------- 475

Query: 510 PTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSM 569
            TY+ ++ S  E  +   A     +M   GI PN  TYN +I               +  
Sbjct: 476 -TYSILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPK 534

Query: 570 MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
           M  D   P  +TY  LI   +  G   EA NLL ++  E +  D + YN I+      G 
Sbjct: 535 MRHDKVMPDLITYNTLIHGYVKEGKMHEAFNLLKIMENENVQPDAVTYNMIISGFSVHGN 594

Query: 630 IDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
           +   +++ ++M    ++PD  T   + +G+V  G
Sbjct: 595 MQEADWVYKKMGARGIEPDRYTYMSMINGHVVAG 628



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 72/401 (17%), Positives = 154/401 (38%), Gaps = 49/401 (12%)

Query: 290 KVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGME 349
           +V  ++ + ++H+  +T   G  + ++ +M+   + P   T++  + A      +   M 
Sbjct: 156 EVNTYTLNIMVHSYCKTLQFGEVDTVISEMEKRCVFPDVVTHNVMVDARFRAGDVEAAMA 215

Query: 350 VLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRC---TNPKPFSAFLAACD 406
           ++  M    +KP   T  ++     +    D A  +   +  C    + + F+  +    
Sbjct: 216 LIDSMVSKGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAPDVRSFNMLIGGFC 275

Query: 407 TMDKPERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIE 465
              + E A++ + +MR +++ PD+ ++  L  LF                          
Sbjct: 276 RAGELEEALRFYKEMRGRRVTPDVVSFSCLIGLF-------------------------- 309

Query: 466 MDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQES 525
               R  + H             A   +RE+ ++      P G   Y  V+     A   
Sbjct: 310 --TRRGEMDH-------------AAEYLREMREF---GLMPDGV-IYTMVIGGFCRAGLM 350

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
             A+ +  +M   G  P+  TYN +++     R    A  L++ M   G  P   T+T L
Sbjct: 351 LEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEELLNEMKERGVPPDLCTFTTL 410

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           I      G+ ++AL   D +S + +  D++ YNT++   C +G +     + + MH  ++
Sbjct: 411 IHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREI 470

Query: 646 QPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
            P+  T   +   +   G  ++A   L  +  + +   + T
Sbjct: 471 FPNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIMT 511



 Score = 57.0 bits (136), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/193 (21%), Positives = 80/193 (41%)

Query: 495 ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCC 554
           E  +   D + P+     N +L +L  A   H   + ++ + +     N  T NIM+   
Sbjct: 110 EAFRLLLDHRVPIPAAASNALLAALSRAGWPHLTADAYRLVLSSNSEVNTYTLNIMVHSY 169

Query: 555 SIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDV 614
                F     ++S M +   +P  +T+  ++      GD + A+ L+D +  +GI   +
Sbjct: 170 CKTLQFGEVDTVISEMEKRCVFPDVVTHNVMVDARFRAGDVEAAMALIDSMVSKGIKPGL 229

Query: 615 LLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQV 674
           + YN++LK     GR D    +   M    V PD  + + +  G+   G    A+   + 
Sbjct: 230 VTYNSVLKGLLRNGRWDKAREVFRAMDACGVAPDVRSFNMLIGGFCRAGELEEALRFYKE 289

Query: 675 LSMRMLCEEVSTL 687
           +  R +  +V + 
Sbjct: 290 MRGRRVTPDVVSF 302


>gi|357110839|ref|XP_003557223.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Brachypodium distachyon]
          Length = 897

 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 115/573 (20%), Positives = 218/573 (38%), Gaps = 48/573 (8%)

Query: 112 MMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKL 171
           MM +  +    +C   +++ L +   +E    L  F+ E  GI P +  Y++FL A  K 
Sbjct: 200 MMGDLGLAPTRRCCNGLLKDLLRADAMELVWKLKGFM-EGAGIPPDVYTYSTFLEAHCKA 258

Query: 172 HSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLS--IFS 229
                A    + M  R    NEVTY  ++        +       E+ +  Y LS   F+
Sbjct: 259 RDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMVD-YGLSPDAFT 317

Query: 230 LRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRT-SEGRLRSSR----LDIPIPLN 284
               +    +   LK A   L  M    +   + +  T  +G ++  +     DI   LN
Sbjct: 318 YGALMNGLCKGGRLKEAKALLDEMSCSGLKPNVVVYATLVDGFMKEGKAAEAFDI---LN 374

Query: 285 ALPVMKVL--RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDR 342
            +    V   +  + ++I    +    G A +L+ +M  +G +P + TY   ++      
Sbjct: 375 EMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLNEMIKVGHRPDTFTYHPLMQGHFQHY 434

Query: 343 GLRNGMEVLKIMQQNNLKPQDSTIATL-SVECSKALELDLAEALLDQISRCTNPKPF--- 398
                 E+L  M+ + + P   T   + +  C      +    L + IS    P  F   
Sbjct: 435 DKDGAFELLNEMRNSGILPNAYTYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYA 494

Query: 399 ---------SAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEG 449
                         AC++++   +A          + PD+  Y  L      V    E  
Sbjct: 495 PLIIGHSKEGHISLACESLENMTKA---------NVLPDLFCYNSLIKGLSTVGRIEEAE 545

Query: 450 NMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGT 509
             ++QV   ++   +  +   + + H +   +NL KA        +L+Q   +S      
Sbjct: 546 EYYAQV---QKRGLVPDEFTYSGLIHGYCKTRNLEKA-------DQLLQQMLNSGLKPNA 595

Query: 510 PTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSM 569
            TY  +L    ++ +  +   I + M   G  P+   Y I+I   S     + A  +++ 
Sbjct: 596 DTYTDLLEGYFKSNDHEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTE 655

Query: 570 MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
           + ++G  P    Y++LI  L    D ++A+ LLD ++ EG+   ++ YN ++   C  G 
Sbjct: 656 VEKNGLVPDLHIYSSLISGLCKMADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGD 715

Query: 630 IDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNC 662
           I     + + +    + P+  T   +  G  NC
Sbjct: 716 ISRARNVFDSILAKGLLPNCVTYTALIDG--NC 746



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 121/588 (20%), Positives = 212/588 (36%), Gaps = 101/588 (17%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y  +M  LCKGG L+EA  L+  +    G+ P + VY + +    K      A   L+ M
Sbjct: 318 YGALMNGLCKGGRLKEAKALLDEM-SCSGLKPNVVVYATLVDGFMKEGKAAEAFDILNEM 376

Query: 185 DSRMVGKNEVTYTELLK-------LAVWQKNLSAV------------HEIWEDYIKHYSL 225
            S  V  N++ Y  L++       L    K L+ +            H + + + +HY  
Sbjct: 377 ISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLNEMIKVGHRPDTFTYHPLMQGHFQHYDK 436

Query: 226 -----------------SIFSLRKFVWSFTRLRDLKSAYETLQHMVALA------MMGKL 262
                            + ++    +    +  + K A   L+ M++        M   L
Sbjct: 437 DGAFELLNEMRNSGILPNAYTYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPL 496

Query: 263 YINRTSEGR--LRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQ 320
            I  + EG   L    L+     N LP +    + ++ +I           AE+   Q+Q
Sbjct: 497 IIGHSKEGHISLACESLENMTKANVLPDL----FCYNSLIKGLSTVGRIEEAEEYYAQVQ 552

Query: 321 SLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELD 380
             GL P   TY G I      R L    ++L+ M  + LKP   T   L     K+ + +
Sbjct: 553 KRGLVPDEFTYSGLIHGYCKTRNLEKADQLLQQMLNSGLKPNADTYTDLLEGYFKSNDHE 612

Query: 381 LAEALLDQISRCTNPKP----FSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELL 435
              ++L Q    +  KP    +   +      +  E A  +  ++ +  L PD+  Y  L
Sbjct: 613 KVSSIL-QSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSL 671

Query: 436 FSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRE 495
            S             +    D  K +  ++ +MA+  ++                     
Sbjct: 672 IS------------GLCKMADMEKAVGLLD-EMAKEGLEP-------------------- 698

Query: 496 LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCS 555
                       G   YN ++     + +  RA  +F  +   G+ PN  TY  +ID   
Sbjct: 699 ------------GIVCYNALIDGFCRSGDISRARNVFDSILAKGLLPNCVTYTALIDGNC 746

Query: 556 IIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVL 615
                  A  L   M+  G  P    Y  L     D  D ++AL L + +   G  H V 
Sbjct: 747 KNGDITDAFDLYKDMLDRGIAPDAFVYNVLATGCSDAADLEQALFLTEEMFNRGYAH-VS 805

Query: 616 LYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
           L++T+++  C++GR+   E ++  M   ++ P+  T   V + +   G
Sbjct: 806 LFSTLVRGFCKRGRLQETEKLLHVMMDREIVPNAQTVENVITEFGKAG 853



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 125/597 (20%), Positives = 230/597 (38%), Gaps = 23/597 (3%)

Query: 108 ETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGA 167
           + +  M  ++  +N   Y +M+  LC+ G +EEA      + + YG+ P    Y + +  
Sbjct: 266 KVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMVD-YGLSPDAFTYGALMNG 324

Query: 168 CAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK-HYSLS 226
             K   +  A   LD M    +  N V Y  L+   + +   +   +I  + I      +
Sbjct: 325 LCKGGRLKEAKALLDEMSCSGLKPNVVVYATLVDGFMKEGKAAEAFDILNEMISAGVQPN 384

Query: 227 IFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYI-NRTSEGRLRSSRLDIPIPL-N 284
                  +    ++  L  A + L  M+ +      +  +   +G  +    D    L N
Sbjct: 385 KIMYDNLIRGLCKIGQLGRASKLLNEMIKVGHRPDTFTYHPLMQGHFQHYDKDGAFELLN 444

Query: 285 ALPVMKVLRWSFSDVIHACGRTQN--SGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDR 342
            +    +L  +++  I   G  QN  S  A  L+ +M S GL+P++  Y   I     + 
Sbjct: 445 EMRNSGILPNAYTYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEG 504

Query: 343 GLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI-SRCTNPKPFS-- 399
            +    E L+ M + N+ P      +L    S    ++ AE    Q+  R   P  F+  
Sbjct: 505 HISLACESLENMTKANVLPDLFCYNSLIKGLSTVGRIEEAEEYYAQVQKRGLVPDEFTYS 564

Query: 400 -AFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDS 457
                 C T +  E+A ++  +M    L+P+  TY  L          Y + N   +V S
Sbjct: 565 GLIHGYCKTRNL-EKADQLLQQMLNSGLKPNADTYTDLLE-------GYFKSNDHEKVSS 616

Query: 458 AKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLH 517
             +      D   N+I    I ++NL ++   E     L +   +   P     Y++++ 
Sbjct: 617 ILQSMLGSGDKPDNHIYG--IVIRNLSRSENMEVAFMVLTEVEKNGLVP-DLHIYSSLIS 673

Query: 518 SLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYP 577
            L +  +  +A+ +  +M   G+ P    YN +ID          A  +   ++  G  P
Sbjct: 674 GLCKMADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLLP 733

Query: 578 QTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFII 637
             +TYTALI      GD  +A +L   +   GI  D  +YN +     +   ++   F+ 
Sbjct: 734 NCVTYTALIDGNCKNGDITDAFDLYKDMLDRGIAPDAFVYNVLATGCSDAADLEQALFLT 793

Query: 638 EQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDF 694
           E+M  N+     S    +  G+   G      + L V+  R +     T+E   ++F
Sbjct: 794 EEMF-NRGYAHVSLFSTLVRGFCKRGRLQETEKLLHVMMDREIVPNAQTVENVITEF 849



 Score = 66.6 bits (161), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 89/428 (20%), Positives = 156/428 (36%), Gaps = 64/428 (14%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A Q++L M  LGL P+    +G ++ ++    +    ++   M+   + P   T +T   
Sbjct: 194 AAQVVLMMGDLGLAPTRRCCNGLLKDLLRADAMELVWKLKGFMEGAGIPPDVYTYSTFLE 253

Query: 372 ECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRP 427
              KA + D A+ + +++ R     N   ++  ++        E A     +M    L P
Sbjct: 254 AHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMVDYGLSP 313

Query: 428 DIRTYELLFS----------------------LFGNVNAPYEEGNMFSQVDSAKRINAIE 465
           D  TY  L +                      L  NV       + F +   A     I 
Sbjct: 314 DAFTYGALMNGLCKGGRLKEAKALLDEMSCSGLKPNVVVYATLVDGFMKEGKAAEAFDIL 373

Query: 466 MDMARNNIQHSHISMKNLLKAL---GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEA 522
            +M    +Q + I   NL++ L   G  G   +L+           T TY+ ++    + 
Sbjct: 374 NEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLNEMIKVGHRPDTFTYHPLMQGHFQH 433

Query: 523 QESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYP----- 577
            +   A E+  +M+  GI PNA TY IMI+        K A  L+  M+ +G  P     
Sbjct: 434 YDKDGAFELLNEMRNSGILPNAYTYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMY 493

Query: 578 --------------------QTMT----------YTALIKILLDYGDFDEALNLLDLVSL 607
                               + MT          Y +LIK L   G  +EA      V  
Sbjct: 494 APLIIGHSKEGHISLACESLENMTKANVLPDLFCYNSLIKGLSTVGRIEEAEEYYAQVQK 553

Query: 608 EGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNS 667
            G+  D   Y+ ++   C+   ++  + +++QM  + ++P+  T   +  GY     H  
Sbjct: 554 RGLVPDEFTYSGLIHGYCKTRNLEKADQLLQQMLNSGLKPNADTYTDLLEGYFKSNDHEK 613

Query: 668 AMEALQVL 675
               LQ +
Sbjct: 614 VSSILQSM 621



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/164 (22%), Positives = 72/164 (43%), Gaps = 3/164 (1%)

Query: 513 NTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVR 572
           N +L  L+ A       ++   M+  GIPP+  TY+  ++     R F +A  +   M R
Sbjct: 214 NGLLKDLLRADAMELVWKLKGFMEGAGIPPDVYTYSTFLEAHCKARDFDAAKKVFEEMRR 273

Query: 573 DGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDV 632
                  +TY  +I  L   G  +EA    + +   G+  D   Y  ++   C+ GR+  
Sbjct: 274 RDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGGRLKE 333

Query: 633 IEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
            + ++++M  + ++P+      +  G++  G    A EA  +L+
Sbjct: 334 AKALLDEMSCSGLKPNVVVYATLVDGFMKEG---KAAEAFDILN 374



 Score = 41.6 bits (96), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 29/119 (24%), Positives = 50/119 (42%)

Query: 545 ATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDL 604
           A  ++++D        ++A+ +V MM   G  P       L+K LL     +    L   
Sbjct: 176 AVLDVLVDTYKKNGSVRTAAQVVLMMGDLGLAPTRRCCNGLLKDLLRADAMELVWKLKGF 235

Query: 605 VSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
           +   GIP DV  Y+T L+  C+    D  + + E+M +     +  T + + SG    G
Sbjct: 236 MEGAGIPPDVYTYSTFLEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSG 294


>gi|356523400|ref|XP_003530328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Glycine max]
          Length = 664

 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 91/396 (22%), Positives = 157/396 (39%), Gaps = 58/396 (14%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A +L+++M   G  P   +Y   + A+  D  +    EV +         +       ++
Sbjct: 199 ACKLLVEMSKRGCVPDGVSYTTVVAAMCEDGRVEEAREVAR-----RFGAEGVVSVCNAL 253

Query: 372 ECSKALELDLAE--ALLDQ-ISRCTNPK--PFSAFLAACDTMDKPERAIKIFAKM-RQKL 425
            C    E  + E   L+D+ +    +P    +S+ ++    + + E A+ +  KM R+  
Sbjct: 254 ICGLCREGRVGEVFGLMDEMVGNGVDPNVVSYSSVISWLSDVGEVELALAVLGKMIRRGC 313

Query: 426 RPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLK 485
           RP++ T+  L          Y  G    +     R+  +E       ++ + +    LL 
Sbjct: 314 RPNVHTFSSLMK-------GYFLGGRVGEGVGLWRVMVLE------GVRPNVVVYNTLLN 360

Query: 486 ALGAEGMIRELIQY--------FCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKT 537
            L   G + E +          FC         TY+T++H  V+A +   A E++ +M  
Sbjct: 361 GLCCSGNLAEAVDVCGRMEKDCFCRPNVT----TYSTLVHGFVKAGDLQGASEVWNKMVN 416

Query: 538 CGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDE 597
           CG+ PN   Y  M+D       F  A  L+  M  DG  P  +T+   IK L   G    
Sbjct: 417 CGVRPNVVVYTSMVDVLCKNSMFDQAYRLIDNMATDGCPPTVVTFNTFIKGLCCGGRVLW 476

Query: 598 ALNLLDLVSLEGIPHDVLLYNTI---------LKKACEKGRIDVIEFIIEQMHQNKVQPD 648
           A+ ++D +   G   D   YN +         LK+ACE         +I ++ + KV+ +
Sbjct: 477 AMRVVDQMQRYGCLPDTRTYNELLDGLFSVNELKEACE---------LIRELEERKVELN 527

Query: 649 PSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEV 684
             T + V  G+ +   H      LQVL  RML   V
Sbjct: 528 LVTYNTVMYGFSS---HGKEEWVLQVLG-RMLVNGV 559



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 2/130 (1%)

Query: 504 KTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCC--SIIRCFK 561
           + P    ++  VL+S   +    RA+++F ++K  G  P    YN ++D         F 
Sbjct: 103 RIPCSQDSFICVLNSYKNSGLGDRALKMFYRIKEFGCKPTVKIYNHLLDALLGESGNKFH 162

Query: 562 SASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTIL 621
              A+   M  +G  P   TY  L+K L   G  D A  LL  +S  G   D + Y T++
Sbjct: 163 MIGAVYENMRGEGMEPNVFTYNVLLKALCKNGKLDGACKLLVEMSKRGCVPDGVSYTTVV 222

Query: 622 KKACEKGRID 631
              CE GR++
Sbjct: 223 AAMCEDGRVE 232



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 67/139 (48%), Gaps = 5/139 (3%)

Query: 512 YNTVLHSLV--EAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSM 569
           YN +L +L+     + H    +++ M+  G+ PN  TYN+++           A  L+  
Sbjct: 146 YNHLLDALLGESGNKFHMIGAVYENMRGEGMEPNVFTYNVLLKALCKNGKLDGACKLLVE 205

Query: 570 MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
           M + G  P  ++YT ++  + + G  +EA  +      EG+   V + N ++   C +GR
Sbjct: 206 MSKRGCVPDGVSYTTVVAAMCEDGRVEEAREVARRFGAEGV---VSVCNALICGLCREGR 262

Query: 630 IDVIEFIIEQMHQNKVQPD 648
           +  +  ++++M  N V P+
Sbjct: 263 VGEVFGLMDEMVGNGVDPN 281



 Score = 52.8 bits (125), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 74/360 (20%), Positives = 132/360 (36%), Gaps = 51/360 (14%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           S+S VI          LA  ++ +M   G +P+ HT+   ++       +  G+ + ++M
Sbjct: 284 SYSSVISWLSDVGEVELALAVLGKMIRRGCRPNVHTFSSLMKGYFLGGRVGEGVGLWRVM 343

Query: 355 QQNNLKPQDSTIATL--SVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPE 412
               ++P      TL   + CS     +LAEA                 +  C  M+K  
Sbjct: 344 VLEGVRPNVVVYNTLLNGLCCSG----NLAEA-----------------VDVCGRMEK-- 380

Query: 413 RAIKIFAKMRQKLRPDIRTYELLFSLF---GNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
                F       RP++ TY  L   F   G++    E  N    V+   R N +     
Sbjct: 381 ---DCFC------RPNVTTYSTLVHGFVKAGDLQGASEVWN--KMVNCGVRPNVV----- 424

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAM 529
                  + SM ++L           LI        P    T+NT +  L        AM
Sbjct: 425 ------VYTSMVDVLCKNSMFDQAYRLIDNMATDGCPPTVVTFNTFIKGLCCGGRVLWAM 478

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
            +  QM+  G  P+  TYN ++D    +   K A  L+  +         +TY  ++   
Sbjct: 479 RVVDQMQRYGCLPDTRTYNELLDGLFSVNELKEACELIRELEERKVELNLVTYNTVMYGF 538

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI-DVIEFIIEQMHQNKVQPD 648
             +G  +  L +L  + + G+  D +  N ++    + G++   I+F+       ++ PD
Sbjct: 539 SSHGKEEWVLQVLGRMLVNGVKPDAITVNVVIYAYSKLGKVRTAIQFLDRITAGKELCPD 598


>gi|357166784|ref|XP_003580849.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
           chloroplastic-like [Brachypodium distachyon]
          Length = 904

 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 111/559 (19%), Positives = 213/559 (38%), Gaps = 95/559 (16%)

Query: 169 AKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKN----LSAVHEIWEDYIKHYS 224
           AK     HA    + M +R +  N   +T L+      ++    LS V E+  + I+   
Sbjct: 280 AKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMRGVLSCVEEMKAEGIE--- 336

Query: 225 LSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLN 284
           L+I +    +  F ++ D +SA    +   A A +G L                     N
Sbjct: 337 LTIVTYSIIIAGFAKINDAQSADNLFKE--AKAKLGDL---------------------N 373

Query: 285 ALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGL 344
            +         +S++IHA  ++ N   AE+L+ +M+  G+      Y   +      +  
Sbjct: 374 GI--------IYSNIIHAHCQSGNMDRAEELVREMEEDGIDAPIDAYHSMMHGYTIIQDE 425

Query: 345 RNGMEVLKIMQQNNLKPQ---DSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAF 401
           +  + V + +++    P       +  L ++  K  +       ++      N K +S  
Sbjct: 426 KKCLIVFERLKECCFTPSIISYGCLINLYIKIGKVTKAIAISKEMESYGIKHNNKTYSML 485

Query: 402 LAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKR 460
           ++    +     A  IF +M +  L+PD   Y LL   F  +      GNM    D A R
Sbjct: 486 ISGFIHLHDFANAFSIFEEMLKSGLQPDRAIYNLLIEAFCKM------GNM----DRAIR 535

Query: 461 INAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPT---YNTVLH 517
           I  +E  M +  +Q S+ + + +++     G ++  +      +     PT   YN ++H
Sbjct: 536 I--LE-KMQKERMQPSNRAFRPIIEGFAVAGDMKRALNILDLMRRSGCAPTVMTYNALIH 592

Query: 518 SLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID------------------------- 552
            L++  +  RA+ +  +M   GI PN  TY I++                          
Sbjct: 593 GLIKKNQVERAVSVLNKMSIAGITPNEHTYTIIMRGYAANGDIGKAFEYFTKIKEGGLKL 652

Query: 553 -----------CCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNL 601
                      CC   R  +SA A+   M        T  Y  LI      GD  EA +L
Sbjct: 653 DVYIYETLLRACCKSGR-MQSALAVTREMSTQKIARNTFVYNILIDGWARRGDVWEAADL 711

Query: 602 LDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVN 661
           +  +  +G+P ++  Y + +   C+ G +   + +IE+M    ++P+  T   +  G+  
Sbjct: 712 MKQMKEDGVPPNIHTYTSYINACCKAGDMQRAQKVIEEMADVGLKPNLKTYTTLIKGWAK 771

Query: 662 CGFHNSAMEALQVLSMRML 680
               + A+++ + + +  L
Sbjct: 772 ASLPDRALKSFEEMKLAGL 790



 Score = 43.9 bits (102), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 3/115 (2%)

Query: 93  ILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERY 152
           +L  C +S      +   R M  ++I  N   Y +++    + G + EA++L+  + E  
Sbjct: 660 LLRACCKSGRMQSALAVTREMSTQKIARNTFVYNILIDGWARRGDVWEAADLMKQMKED- 718

Query: 153 GIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQK 207
           G+ P +  Y S++ AC K   M  A   ++ M    +  N  TYT L+K   W K
Sbjct: 719 GVPPNIHTYTSYINACCKAGDMQRAQKVIEEMADVGLKPNLKTYTTLIK--GWAK 771


>gi|225427482|ref|XP_002263209.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 592

 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 85/402 (21%), Positives = 160/402 (39%), Gaps = 24/402 (5%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           ++  +IH   +  NS  A +L+  M     +P+  TY+  I  +  DR +   + +   M
Sbjct: 181 TYGTLIHGLCKVGNSRAAIRLLRSMVQKNCEPNVITYNTIIDCLFKDRQVNEALNIFSEM 240

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERA 414
               + P  ST  ++     K  E      L++++           F    D + K E  
Sbjct: 241 IAKGISPNVSTYNSIIHGLCKFSEWKHVATLMNEMVDSKIMPNVVIFTTLVDALCK-EGM 299

Query: 415 IKIF-----AKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMF-SQVDSAKRINAIEMDM 468
           + I        +++ + PD+ TY  L            +G+   S++D A ++      M
Sbjct: 300 VTIAHDVVDVMIQRGVEPDVVTYTALM-----------DGHCLRSEMDEADKVFDT---M 345

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRELIQYF---CDSKTPLGTPTYNTVLHSLVEAQES 525
            R     + IS   L+        I + +  F   C  +      TYNT++H L      
Sbjct: 346 VRKGCAPNVISYSTLINGYCKIQRIDKAMYLFEEMCQRELVPNIVTYNTLIHGLCHVGRL 405

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
             A+ +F +M   G  P+  TY I++D     R    A A++  +      P   +Y  +
Sbjct: 406 RDAIALFHEMVASGQIPDLVTYRILLDYLCKTRHLDQAMAMLKAIEGSNLAPDIQSYNIV 465

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           I  +   G+ + A +L   +S +G+  DV  Y  ++   C +G +     +  +M+ +  
Sbjct: 466 IDGMCRVGELEAAGDLFSSLSSKGLHPDVWTYTIMINGLCLQGLLAEATKLFREMNTDGC 525

Query: 646 QPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTL 687
            PD  T + +  G++      SA++ LQ +  R    + ST+
Sbjct: 526 SPDDCTYNLITRGFLRNNETLSAIQLLQEMLGRGFSADASTI 567



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 86/185 (46%), Gaps = 5/185 (2%)

Query: 479 SMKNLLKALGAEGMIRELIQYF----CDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQ 534
           +   L++ L  EG I E +  F     +   P G  TY T++H L +   S  A+ + + 
Sbjct: 146 TFTTLIRGLCVEGKIGEALHLFDKMVGEGFQPNGV-TYGTLIHGLCKVGNSRAAIRLLRS 204

Query: 535 MKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGD 594
           M      PN  TYN +IDC    R    A  + S M+  G  P   TY ++I  L  + +
Sbjct: 205 MVQKNCEPNVITYNTIIDCLFKDRQVNEALNIFSEMIAKGISPNVSTYNSIIHGLCKFSE 264

Query: 595 FDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHF 654
           +     L++ +    I  +V+++ T++   C++G + +   +++ M Q  V+PD  T   
Sbjct: 265 WKHVATLMNEMVDSKIMPNVVIFTTLVDALCKEGMVTIAHDVVDVMIQRGVEPDVVTYTA 324

Query: 655 VFSGY 659
           +  G+
Sbjct: 325 LMDGH 329



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 70/354 (19%), Positives = 148/354 (41%), Gaps = 18/354 (5%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ +IH   +         LM +M    + P+   +   + A+  +  +    +V+ +M
Sbjct: 251 TYNSIIHGLCKFSEWKHVATLMNEMVDSKIMPNVVIFTTLVDALCKEGMVTIAHDVVDVM 310

Query: 355 QQNNLKPQDST-IATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDK 410
            Q  ++P   T  A +   C ++ E+D A+ + D + R     N   +S  +     + +
Sbjct: 311 IQRGVEPDVVTYTALMDGHCLRS-EMDEADKVFDTMVRKGCAPNVISYSTLINGYCKIQR 369

Query: 411 PERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
            ++A+ +F +M Q+ L P+I TY  L     +V    +   +F ++ ++ +I     D+ 
Sbjct: 370 IDKAMYLFEEMCQRELVPNIVTYNTLIHGLCHVGRLRDAIALFHEMVASGQIP----DLV 425

Query: 470 RNNIQHSHI-SMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRA 528
              I   ++   ++L +A+        +++    S       +YN V+  +    E   A
Sbjct: 426 TYRILLDYLCKTRHLDQAMA-------MLKAIEGSNLAPDIQSYNIVIDGMCRVGELEAA 478

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
            ++F  + + G+ P+  TY IMI+   +      A+ L   M  DG  P   TY  + + 
Sbjct: 479 GDLFSSLSSKGLHPDVWTYTIMINGLCLQGLLAEATKLFREMNTDGCSPDDCTYNLITRG 538

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642
            L   +   A+ LL  +   G   D      I++   + G    ++ I+ +  Q
Sbjct: 539 FLRNNETLSAIQLLQEMLGRGFSADASTITLIVEMLSDDGLDQSVKQILHEFVQ 592


>gi|302826103|ref|XP_002994591.1| hypothetical protein SELMODRAFT_138844 [Selaginella moellendorffii]
 gi|300137362|gb|EFJ04342.1| hypothetical protein SELMODRAFT_138844 [Selaginella moellendorffii]
          Length = 599

 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 76/161 (47%)

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           Y TVL+   E ++  + +  F ++K CG+ P AATY  ++   +       A  ++  M 
Sbjct: 160 YTTVLNGFAEIRDEEKCLSFFHRLKACGLSPTAATYGCIVKLFTKAGNMAKALDILEEMD 219

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
           + G  P  M Y  ++      GDF  A  + + +   G+  D+++YN ++   C+ GR+D
Sbjct: 220 KHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKPDIVIYNILVHAFCKAGRMD 279

Query: 632 VIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEAL 672
               ++E +  N++ P   T   +  GYV  G    A+E  
Sbjct: 280 KALGVLENIEANRLLPTIETYTSILDGYVKGGNIQKALEVF 320



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 116/548 (21%), Positives = 214/548 (39%), Gaps = 44/548 (8%)

Query: 154 IYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLK-LAVWQKNLSAV 212
           I P + +Y S + A A+   M  A  C + M S+ +  NE  +  ++   A    N +A 
Sbjct: 48  IKPNVHIYTSLIHAYAEARDMEGAVACTEEMLSQGIQLNEAVFCSIISGYASAGNNEAAE 107

Query: 213 HEIWEDYIKHYSLSIFSL--RKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEG 270
           H  W +  K  +L    +     V ++ +  ++++    L  M      G L +  T   
Sbjct: 108 H--WFEKFKAENLVPGGIVYNSIVQAYCQAGNMETVEALLAQMEEEGFQGNLGLYTTVLN 165

Query: 271 RLRSSRLDIPIPLNALPVMKVLRWSFSDVIHAC-----GRTQNSGLAEQLMLQMQSLGLQ 325
                R D    L+    +K    S +   + C      +  N   A  ++ +M   G+ 
Sbjct: 166 GFAEIR-DEEKCLSFFHRLKACGLSPTAATYGCIVKLFTKAGNMAKALDILEEMDKHGVS 224

Query: 326 PSSHTYDGFIRAIVSDRGLRNG-----MEVLKIMQQNNLKPQDSTIATLSVECSKALELD 380
           P+   Y     A++ D   R G      +V + M    LKP       L     KA  +D
Sbjct: 225 PNKMIY-----AMIMDGYARGGDFTAAFKVWEDMVSAGLKPDIVIYNILVHAFCKAGRMD 279

Query: 381 LAEALLDQISRCTNPKPFSAFLAACDTMDKP---ERAIKIFAKMRQK-LRPDIRTYELLF 436
            A  +L+ I           + +  D   K    ++A+++F +++   LRP + +Y  L 
Sbjct: 280 KALGVLENIEANRLLPTIETYTSILDGYVKGGNIQKALEVFDRIKTAGLRPGVVSYNSLL 339

Query: 437 SLFGNVNAPYEEGNMFSQVDSAK-RINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRE 495
           S                Q+++A+  +N    +M  N +  +  S   L +     G + +
Sbjct: 340 SGLAKAR----------QMENARLMLN----EMLANGVVPNERSYTALTEGYARAGDVEK 385

Query: 496 LIQYFCDSKT---PLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID 552
               F   K     +    Y  +L +  ++    RA E+F+Q+   G+  N  TY  M+D
Sbjct: 386 AFGMFQRMKKENLAIDIVAYGALLKACCKSGAMQRAAEVFQQITDAGLKHNRITYCTMLD 445

Query: 553 CCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPH 612
             +       A  L++ M + GF+  T+ YT+ IK     GD +E    L ++  + +  
Sbjct: 446 GWARKGELSKARDLLNDMQKHGFHLDTICYTSFIKACFRSGDTEEVTETLAVMREKKLEV 505

Query: 613 DVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAM-EA 671
           +   Y T++         D      EQ   + +Q D +  + + SG ++C   NS + E 
Sbjct: 506 NARTYTTLIHGWLAAADPDQAISCYEQAKASGLQLDSALSNCLLSGLISCASQNSTLGEK 565

Query: 672 LQVLSMRM 679
           +Q +S  +
Sbjct: 566 IQAISAEI 573



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 85/462 (18%), Positives = 190/462 (41%), Gaps = 44/462 (9%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y  ++QA C+ G +E    L+  + E  G    L +Y + L   A++            +
Sbjct: 125 YNSIVQAYCQAGNMETVEALLAQM-EEEGFQGNLGLYTTVLNGFAEIRDEEKCLSFFHRL 183

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWS-----FTR 239
            +  +     TY  ++KL     N++   +I E+  KH      S  K +++     + R
Sbjct: 184 KACGLSPTAATYGCIVKLFTKAGNMAKALDILEEMDKHG----VSPNKMIYAMIMDGYAR 239

Query: 240 LRDLKSAYETLQHMVALAMMGKLYI-NRTSEGRLRSSRLDIPIPL-------NALPVMKV 291
             D  +A++  + MV+  +   + I N       ++ R+D  + +         LP ++ 
Sbjct: 240 GGDFTAAFKVWEDMVSAGLKPDIVIYNILVHAFCKAGRMDKALGVLENIEANRLLPTIE- 298

Query: 292 LRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVL 351
              +++ ++    +  N   A ++  ++++ GL+P   +Y+  +  +   R + N   +L
Sbjct: 299 ---TYTSILDGYVKGGNIQKALEVFDRIKTAGLRPGVVSYNSLLSGLAKARQMENARLML 355

Query: 352 KIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTM 408
             M  N + P + +   L+   ++A +++ A  +  ++ +     +   + A L AC   
Sbjct: 356 NEMLANGVVPNERSYTALTEGYARAGDVEKAFGMFQRMKKENLAIDIVAYGALLKACCKS 415

Query: 409 DKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMD 467
              +RA ++F ++    L+ +  TY  +   +        +G +    D       +  D
Sbjct: 416 GAMQRAAEVFQQITDAGLKHNRITYCTMLDGWA------RKGELSKARD-------LLND 462

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRELIQYFC---DSKTPLGTPTYNTVLHSLVEAQE 524
           M ++      I   + +KA    G   E+ +      + K  +   TY T++H  + A +
Sbjct: 463 MQKHGFHLDTICYTSFIKACFRSGDTEEVTETLAVMREKKLEVNARTYTTLIHGWLAAAD 522

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASAL 566
             +A+  ++Q K  G+  ++A  N ++    +I C    S L
Sbjct: 523 PDQAISCYEQAKASGLQLDSALSNCLLS--GLISCASQNSTL 562


>gi|334182516|ref|NP_172730.3| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
 gi|332190794|gb|AEE28915.1| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
          Length = 735

 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 76/385 (19%), Positives = 167/385 (43%), Gaps = 47/385 (12%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           ++ + +I+   R   +  A  ++ ++  LG +P + T++  I+ +  +  +   + ++  
Sbjct: 124 YTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDR 183

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPER 413
           M +N  +P   T  ++     ++ +  LA  LL ++                      ER
Sbjct: 184 MVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKME---------------------ER 222

Query: 414 AIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNI 473
            +K           D+ TY  +      +++   +G + + +   K       +M    I
Sbjct: 223 NVK----------ADVFTYSTI------IDSLCRDGCIDAAISLFK-------EMETKGI 259

Query: 474 QHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAME 530
           + S ++  +L++ L   G   +   L++     +      T+N +L   V+  +   A E
Sbjct: 260 KSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANE 319

Query: 531 IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590
           ++K+M T GI PN  TYN ++D   +      A+ ++ +MVR+   P  +T+T+LIK   
Sbjct: 320 LYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYC 379

Query: 591 DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650
                D+ + +   +S  G+  + + Y+ +++  C+ G+I + E + ++M  + V PD  
Sbjct: 380 MVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVM 439

Query: 651 TCHFVFSGYVNCGFHNSAMEALQVL 675
           T   +  G  + G    A+E  + L
Sbjct: 440 TYGILLDGLCDNGKLEKALEIFEDL 464



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 59/269 (21%), Positives = 110/269 (40%), Gaps = 16/269 (5%)

Query: 421 MRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISM 480
           M+    PD  T+  L      +   + EG +   V    R       M  N  Q   ++ 
Sbjct: 150 MKLGYEPDTTTFNTL------IKGLFLEGKVSEAVVLVDR-------MVENGCQPDVVTY 196

Query: 481 KNLLKAL---GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKT 537
            +++  +   G   +  +L++   +        TY+T++ SL        A+ +FK+M+T
Sbjct: 197 NSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMET 256

Query: 538 CGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDE 597
            GI  +  TYN ++        +   + L+  MV     P  +T+  L+ + +  G   E
Sbjct: 257 KGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQE 316

Query: 598 ALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFS 657
           A  L   +   GI  +++ YNT++   C + R+     +++ M +NK  PD  T   +  
Sbjct: 317 ANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIK 376

Query: 658 GYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           GY      +  M+  + +S R L     T
Sbjct: 377 GYCMVKRVDDGMKVFRNISKRGLVANAVT 405



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 78/373 (20%), Positives = 147/373 (39%), Gaps = 49/373 (13%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ +++   R+ ++ LA  L+ +M+   ++    TY   I ++  D  +   + + K M
Sbjct: 195 TYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEM 254

Query: 355 QQNNLKPQDSTIATLSVECSKALEL-DLAEALLDQISRCTNPK--PFSAFLAACDTMDKP 411
           +   +K    T  +L     KA +  D A  L D +SR   P    F+  L       K 
Sbjct: 255 ETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKL 314

Query: 412 ERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           + A +++ +M  + + P+I TY  L   +   N   E  NM                M R
Sbjct: 315 QEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDL-------------MVR 361

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAME 530
           N      ++  +L+K              +C                     +     M+
Sbjct: 362 NKCSPDIVTFTSLIKG-------------YC-------------------MVKRVDDGMK 389

Query: 531 IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590
           +F+ +   G+  NA TY+I++         K A  L   MV  G  P  MTY  L+  L 
Sbjct: 390 VFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLC 449

Query: 591 DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650
           D G  ++AL + + +    +   +++Y TI++  C+ G+++    +   +    V+P+  
Sbjct: 450 DNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVM 509

Query: 651 TCHFVFSGYVNCG 663
           T   + SG    G
Sbjct: 510 TYTVMISGLCKKG 522



 Score = 66.6 bits (161), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 78/349 (22%), Positives = 134/349 (38%), Gaps = 29/349 (8%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           +++S +I +  R      A  L  +M++ G++ S  TY+  +R +       +G  +LK 
Sbjct: 229 FTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKD 288

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPK--PFSAFLAACDTMDK 410
           M    + P   T   L     K  +L  A  L  + I+R  +P    ++  +      ++
Sbjct: 289 MVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNR 348

Query: 411 PERAIKIFAKM-RQKLRPDIRTYELLFS-------------LFGNVNAPYEEGNM----- 451
              A  +   M R K  PDI T+  L               +F N++      N      
Sbjct: 349 LSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSI 408

Query: 452 ----FSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCD---SK 504
               F Q    K    +  +M  + +    ++   LL  L   G + + ++ F D   SK
Sbjct: 409 LVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSK 468

Query: 505 TPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSAS 564
             LG   Y T++  + +  +   A  +F  +   G+ PN  TY +MI           A+
Sbjct: 469 MDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEAN 528

Query: 565 ALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHD 613
            L+  M  DG  P   TY  LI+  L  GD   +  L++ +   G   D
Sbjct: 529 ILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSAD 577



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 58/258 (22%), Positives = 102/258 (39%), Gaps = 8/258 (3%)

Query: 436 FSLFGNVNAPYEEGNMFSQVDSAKRINAIEM--DMARNNIQHSHISMKNLLKALGAEGMI 493
           FS   N N  + E  + S +   K+ +AI +  +M R+    S +       A+      
Sbjct: 46  FSSISNGNVCFRE-RLRSGIVDIKKDDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQF 104

Query: 494 RELIQYFCDSKTPLGTP----TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNI 549
             L+  FC      G      T N +++      ++  A  +  ++   G  P+  T+N 
Sbjct: 105 -NLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNT 163

Query: 550 MIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEG 609
           +I    +      A  LV  MV +G  P  +TY +++  +   GD   AL+LL  +    
Sbjct: 164 LIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERN 223

Query: 610 IPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAM 669
           +  DV  Y+TI+   C  G ID    + ++M    ++    T + +  G    G  N   
Sbjct: 224 VKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGA 283

Query: 670 EALQVLSMRMLCEEVSTL 687
             L+ +  R +   V T 
Sbjct: 284 LLLKDMVSREIVPNVITF 301



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 64/286 (22%), Positives = 120/286 (41%), Gaps = 28/286 (9%)

Query: 90  FFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLG 149
           +  I+N   RS D    ++  R MEE+ +  +   Y  ++ +LC+ G ++ A +L   + 
Sbjct: 196 YNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEM- 254

Query: 150 ERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNL 209
           E  GI   +  YNS +    K        L L  M SR +  N +T+  LL + V +  L
Sbjct: 255 ETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKL 314

Query: 210 SAVHEIWEDYI-KHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMV-----------ALA 257
              +E++++ I +  S +I +    +  +     L  A   L  MV              
Sbjct: 315 QEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSL 374

Query: 258 MMGKLYINRTSEG----RLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAE 313
           + G   + R  +G    R  S R    +  NA+        ++S ++    ++    LAE
Sbjct: 375 IKGYCMVKRVDDGMKVFRNISKR---GLVANAV--------TYSILVQGFCQSGKIKLAE 423

Query: 314 QLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNL 359
           +L  +M S G+ P   TY   +  +  +  L   +E+ + +Q++ +
Sbjct: 424 ELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKM 469



 Score = 45.1 bits (105), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 28/112 (25%), Positives = 57/112 (50%), Gaps = 1/112 (0%)

Query: 107 METWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLG 166
           +E +  +++ ++ L    Y  +++ +CKGG +E+A NL   L  + G+ P +  Y   + 
Sbjct: 458 LEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCK-GVKPNVMTYTVMIS 516

Query: 167 ACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWED 218
              K  S+  AN+ L  M+      N+ TY  L++  +   +L+A  ++ E+
Sbjct: 517 GLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEE 568


>gi|449530359|ref|XP_004172163.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Cucumis sativus]
          Length = 831

 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 64/286 (22%), Positives = 121/286 (42%), Gaps = 48/286 (16%)

Query: 398 FSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVD 456
           +++ + A  +  +   A+ +F K+ ++  RP + TY ++ +++G +  P+ +        
Sbjct: 223 YTSLITAYASNGRYREAVMVFKKLEEEGCRPTLITYNVILNVYGKMGMPWSK-------- 274

Query: 457 SAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVL 516
                                  +  L+ ++ + G+  +L              TYNT++
Sbjct: 275 -----------------------IAGLVDSMKSSGVAPDLY-------------TYNTLI 298

Query: 517 HSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFY 576
            S         A E+F++MK  G  P+  TYN ++D     R  + A  ++  M   GF 
Sbjct: 299 SSCRRGSLYEEAAEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFA 358

Query: 577 PQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFI 636
           P  +TY +LI      G  DEA+ L   +  +GI  DV  Y T+L    + G+ D    +
Sbjct: 359 PSIVTYNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKV 418

Query: 637 IEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCE 682
            E+M     QP+  T + +   + N G   + +E ++V     +CE
Sbjct: 419 FEEMRVAGCQPNICTFNALIKMHGNRG---NFVEMMKVFEEIKICE 461



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 79/373 (21%), Positives = 158/373 (42%), Gaps = 20/373 (5%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           ++++ +I +C R      A ++  +M++ G  P   TY+  +      R  R  MEVLK 
Sbjct: 292 YTYNTLISSCRRGSLYEEAAEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKE 351

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPKPFS--AFLAACDTMDK 410
           M+ +   P   T  +L    ++   LD A  L  Q + +   P  F+    L+  +   K
Sbjct: 352 MEASGFAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGK 411

Query: 411 PERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
            + A+K+F +MR    +P+I T+  L  + GN     E   +F ++   + +  I     
Sbjct: 412 DDYAMKVFEEMRVAGCQPNICTFNALIKMHGNRGNFVEMMKVFEEIKICECVPDI----- 466

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESH 526
                   ++   LL   G  GM  E+   F + K     P   T+NT++ +        
Sbjct: 467 --------VTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFD 518

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
           +AM I+++M   G+ P+ +TYN ++   +    ++ +  +++ M      P  +TY +L+
Sbjct: 519 QAMAIYRRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSLL 578

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
               +  + +    L + +    I    +L  T++    +   +   E    ++ +    
Sbjct: 579 HAYANGKEVERMSALAEEIYSGIIEPQAVLLKTLVLVYSKSDLLTETERAFLELREQGFS 638

Query: 647 PDPSTCHFVFSGY 659
           PD +T + + S Y
Sbjct: 639 PDITTLNAMVSIY 651



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 84/430 (19%), Positives = 165/430 (38%), Gaps = 67/430 (15%)

Query: 299 VIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNN 358
           +I   G+   +  A  L+  +++ G+    + Y   I A  S+   R  + V K +++  
Sbjct: 191 IISVLGKEGRASFAASLLHDLRNDGVHIDIYAYTSLITAYASNGRYREAVMVFKKLEEEG 250

Query: 359 LKPQDSTI-ATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDKPER 413
            +P   T    L+V     +       L+D + + +   P    ++  +++C      E 
Sbjct: 251 CRPTLITYNVILNVYGKMGMPWSKIAGLVDSM-KSSGVAPDLYTYNTLISSCRRGSLYEE 309

Query: 414 AIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNN 472
           A ++F +M+     PD  TY  L  ++G    P E   +  +++++    +I        
Sbjct: 310 AAEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSI-------- 361

Query: 473 IQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAM 529
                ++  +L+ A   +G++ E ++           P   TY T+L    +  +   AM
Sbjct: 362 -----VTYNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAM 416

Query: 530 EIFKQMKTCGIPPNAATYNIMI----------------------DCCSIIRCFKS----- 562
           ++F++M+  G  PN  T+N +I                      +C   I  + +     
Sbjct: 417 KVFEEMRVAGCQPNICTFNALIKMHGNRGNFVEMMKVFEEIKICECVPDIVTWNTLLAVF 476

Query: 563 --------ASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDV 614
                    S +   M R GF P+  T+  LI      G FD+A+ +   +   G+  D+
Sbjct: 477 GQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDL 536

Query: 615 LLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQV 674
             YN +L      G  +  E ++ +M   + +P+  T   +   Y N           +V
Sbjct: 537 STYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAYAN---------GKEV 587

Query: 675 LSMRMLCEEV 684
             M  L EE+
Sbjct: 588 ERMSALAEEI 597



 Score = 68.9 bits (167), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 107/516 (20%), Positives = 194/516 (37%), Gaps = 57/516 (11%)

Query: 93  ILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERY 152
           +L+   +S  P   ME  + ME      +   Y  ++ A  + G L+EA  L   + ++ 
Sbjct: 332 LLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISAYARDGLLDEAMELKSQMVKK- 390

Query: 153 GIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAV 212
           GI P +  Y + L    K     +A    + M       N  T+  L+K+   + N   +
Sbjct: 391 GIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPNICTFNALIKMHGNRGNFVEM 450

Query: 213 HEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRL 272
            +++E+                     ++  +   + +     LA+ G+  ++    G  
Sbjct: 451 MKVFEE---------------------IKICECVPDIVTWNTLLAVFGQNGMDSEVSGVF 489

Query: 273 RSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYD 332
           +  +    +P          R +F+ +I A  R      A  +  +M   G+ P   TY+
Sbjct: 490 KEMKRAGFVPE---------RDTFNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDLSTYN 540

Query: 333 GFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI-SR 391
             + A+          +VL  M+    KP + T  +L    +   E++   AL ++I S 
Sbjct: 541 AVLAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEVERMSALAEEIYSG 600

Query: 392 CTNP-----KPFSAFLAACDTMDKPERAIKIFAKMR-QKLRPDIRTYELLFSLFGN---V 442
              P     K      +  D + + ERA   F ++R Q   PDI T   + S++G    V
Sbjct: 601 IIEPQAVLLKTLVLVYSKSDLLTETERA---FLELREQGFSPDITTLNAMVSIYGRRRMV 657

Query: 443 NAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCD 502
           +   E  N          +      M   +        +++L+ + A+GM  ++I     
Sbjct: 658 SKTNEILNFIKDSGFTPSLTTYNSLMYMYSRTEHFEKSEDILREIIAKGMKPDII----- 712

Query: 503 SKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKS 562
                   ++NTV+ +         A  IF +MK  G+ P+  TYN  I   +    F  
Sbjct: 713 --------SFNTVIFAYCRNGRMKEASRIFAEMKDFGLAPDVITYNTFIASYASDSMFIE 764

Query: 563 ASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEA 598
           A  +V  M+++   P   TY +LI         DEA
Sbjct: 765 AIDVVKYMIKNECKPNQNTYNSLIDWFCKLNRRDEA 800



 Score = 65.1 bits (157), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 110/559 (19%), Positives = 230/559 (41%), Gaps = 43/559 (7%)

Query: 153 GIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAV 212
           G+ P L  YN+ + +C +      A    + M +     ++VTY  LL +    +     
Sbjct: 286 GVAPDLYTYNTLISSCRRGSLYEEAAEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPREA 345

Query: 213 HEIWEDY-IKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRT-SEG 270
            E+ ++     ++ SI +    + ++ R   L  A E    MV   +   ++   T   G
Sbjct: 346 MEVLKEMEASGFAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSG 405

Query: 271 RLRSSRLDIPIPLNALPVMKVLRW--------SFSDVIHACGRTQNSGLAEQLMLQMQSL 322
             ++ + D      A+ V + +R         +F+ +I   G   N     ++  +++  
Sbjct: 406 FEKTGKDDY-----AMKVFEEMRVAGCQPNICTFNALIKMHGNRGNFVEMMKVFEEIKIC 460

Query: 323 GLQPSSHTYDGFIRAIVSDRGLRNGME-VLKIMQQNNLKPQDSTIATLSVECSKALELDL 381
              P   T++  + A+    G+ + +  V K M++    P+  T  TL    S+    D 
Sbjct: 461 ECVPDIVTWNTLL-AVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQ 519

Query: 382 AEALLDQ-ISRCTNP--KPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFS 437
           A A+  + +     P    ++A LAA       E++ K+ A+M+  + +P+  TY  L  
Sbjct: 520 AMAIYRRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSLLH 579

Query: 438 LFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELI 497
            + N                 +R++A+  ++    I+   + +K L+       ++ E  
Sbjct: 580 AYANGK-------------EVERMSALAEEIYSGIIEPQAVLLKTLVLVYSKSDLLTETE 626

Query: 498 QYFCDSKTPLGTPTYNTVLHSLVEAQESHRAM----EIFKQMKTCGIPPNAATYNIMIDC 553
           + F + +    +P   T L+++V      R +    EI   +K  G  P+  TYN ++  
Sbjct: 627 RAFLELREQGFSPDI-TTLNAMVSIYGRRRMVSKTNEILNFIKDSGFTPSLTTYNSLMYM 685

Query: 554 CSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHD 613
            S    F+ +  ++  ++  G  P  +++  +I      G   EA  +   +   G+  D
Sbjct: 686 YSRTEHFEKSEDILREIIAKGMKPDIISFNTVIFAYCRNGRMKEASRIFAEMKDFGLAPD 745

Query: 614 VLLYNT-ILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEAL 672
           V+ YNT I   A +   I+ I+ +++ M +N+ +P+ +T + +   +      + A   +
Sbjct: 746 VITYNTFIASYASDSMFIEAID-VVKYMIKNECKPNQNTYNSLIDWFCKLNRRDEANSFI 804

Query: 673 QVLSMRMLCEEVSTLEEKR 691
              ++R L   V+  EE+R
Sbjct: 805 S--NLRNLDPSVTKDEERR 821



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 45/217 (20%), Positives = 86/217 (39%), Gaps = 4/217 (1%)

Query: 483 LLKALGAEG---MIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCG 539
           ++  LG EG       L+    +    +    Y +++ +         A+ +FK+++  G
Sbjct: 191 IISVLGKEGRASFAASLLHDLRNDGVHIDIYAYTSLITAYASNGRYREAVMVFKKLEEEG 250

Query: 540 IPPNAATYNIMIDCCSIIRC-FKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEA 598
             P   TYN++++    +   +   + LV  M   G  P   TY  LI        ++EA
Sbjct: 251 CRPTLITYNVILNVYGKMGMPWSKIAGLVDSMKSSGVAPDLYTYNTLISSCRRGSLYEEA 310

Query: 599 LNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
             + + +   G   D + YN +L    +  R      ++++M  +   P   T + + S 
Sbjct: 311 AEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISA 370

Query: 659 YVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDFE 695
           Y   G  + AME    +  + +  +V T     S FE
Sbjct: 371 YARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFE 407


>gi|449438627|ref|XP_004137089.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Cucumis sativus]
          Length = 831

 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 64/286 (22%), Positives = 121/286 (42%), Gaps = 48/286 (16%)

Query: 398 FSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVD 456
           +++ + A  +  +   A+ +F K+ ++  RP + TY ++ +++G +  P+ +        
Sbjct: 223 YTSLITAYASNGRYREAVMVFKKLEEEGCRPTLITYNVILNVYGKMGMPWSK-------- 274

Query: 457 SAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVL 516
                                  +  L+ ++ + G+  +L              TYNT++
Sbjct: 275 -----------------------IAGLVDSMKSSGVAPDLY-------------TYNTLI 298

Query: 517 HSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFY 576
            S         A E+F++MK  G  P+  TYN ++D     R  + A  ++  M   GF 
Sbjct: 299 SSCRRGSLYEEAAEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFA 358

Query: 577 PQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFI 636
           P  +TY +LI      G  DEA+ L   +  +GI  DV  Y T+L    + G+ D    +
Sbjct: 359 PSIVTYNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKV 418

Query: 637 IEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCE 682
            E+M     QP+  T + +   + N G   + +E ++V     +CE
Sbjct: 419 FEEMRVAGCQPNICTFNALIKMHGNRG---NFVEMMKVFEEIKICE 461



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 79/373 (21%), Positives = 158/373 (42%), Gaps = 20/373 (5%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           ++++ +I +C R      A ++  +M++ G  P   TY+  +      R  R  MEVLK 
Sbjct: 292 YTYNTLISSCRRGSLYEEAAEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKE 351

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPKPFS--AFLAACDTMDK 410
           M+ +   P   T  +L    ++   LD A  L  Q + +   P  F+    L+  +   K
Sbjct: 352 MEASGFAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGK 411

Query: 411 PERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
            + A+K+F +MR    +P+I T+  L  + GN     E   +F ++   + +  I     
Sbjct: 412 DDYAMKVFEEMRVAGCQPNICTFNALIKMHGNRGNFVEMMKVFEEIKICECVPDI----- 466

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESH 526
                   ++   LL   G  GM  E+   F + K     P   T+NT++ +        
Sbjct: 467 --------VTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFD 518

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
           +AM I+++M   G+ P+ +TYN ++   +    ++ +  +++ M      P  +TY +L+
Sbjct: 519 QAMAIYRRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSLL 578

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
               +  + +    L + +    I    +L  T++    +   +   E    ++ +    
Sbjct: 579 HAYANGKEVERMSALAEEIYSGIIEPQAVLLKTLVLVYSKSDLLTETERAFLELREQGFS 638

Query: 647 PDPSTCHFVFSGY 659
           PD +T + + S Y
Sbjct: 639 PDITTLNAMVSIY 651



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 84/430 (19%), Positives = 164/430 (38%), Gaps = 67/430 (15%)

Query: 299 VIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNN 358
           +I   G+   +  A  L+  +++ G+    + Y   I A  S+   R  + V K +++  
Sbjct: 191 IISVLGKEGRASFAASLLHDLRNDGVHIDIYAYTSLITAYASNGRYREAVMVFKKLEEEG 250

Query: 359 LKPQDSTI-ATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDKPER 413
            +P   T    L+V     +       L+D + + +   P    ++  +++C      E 
Sbjct: 251 CRPTLITYNVILNVYGKMGMPWSKIAGLVDSM-KSSGVAPDLYTYNTLISSCRRGSLYEE 309

Query: 414 AIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNN 472
           A ++F +M+     PD  TY  L  ++G    P E   +  +++++              
Sbjct: 310 AAEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEAS-------------G 356

Query: 473 IQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAM 529
              S ++  +L+ A   +G++ E ++           P   TY T+L    +  +   AM
Sbjct: 357 FAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAM 416

Query: 530 EIFKQMKTCGIPPNAATYNIMI----------------------DCCSIIRCFKS----- 562
           ++F++M+  G  PN  T+N +I                      +C   I  + +     
Sbjct: 417 KVFEEMRVAGCQPNICTFNALIKMHGNRGNFVEMMKVFEEIKICECVPDIVTWNTLLAVF 476

Query: 563 --------ASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDV 614
                    S +   M R GF P+  T+  LI      G FD+A+ +   +   G+  D+
Sbjct: 477 GQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDL 536

Query: 615 LLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQV 674
             YN +L      G  +  E ++ +M   + +P+  T   +   Y N           +V
Sbjct: 537 STYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAYAN---------GKEV 587

Query: 675 LSMRMLCEEV 684
             M  L EE+
Sbjct: 588 ERMSALAEEI 597



 Score = 72.8 bits (177), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 108/520 (20%), Positives = 197/520 (37%), Gaps = 57/520 (10%)

Query: 93  ILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERY 152
           +L+   +S  P   ME  + ME      +   Y  ++ A  + G L+EA  L   + ++ 
Sbjct: 332 LLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISAYARDGLLDEAMELKSQMVKK- 390

Query: 153 GIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAV 212
           GI P +  Y + L    K     +A    + M       N  T+  L+K+   + N   +
Sbjct: 391 GIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPNICTFNALIKMHGNRGNFVEM 450

Query: 213 HEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRL 272
            +++E+                     ++  +   + +     LA+ G+  ++    G  
Sbjct: 451 MKVFEE---------------------IKICECVPDIVTWNTLLAVFGQNGMDSEVSGVF 489

Query: 273 RSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYD 332
           +  +    +P          R +F+ +I A  R      A  +  +M   G+ P   TY+
Sbjct: 490 KEMKRAGFVPE---------RDTFNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDLSTYN 540

Query: 333 GFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI-SR 391
             + A+          +VL  M+    KP + T  +L    +   E++   AL ++I S 
Sbjct: 541 AVLAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEVERMSALAEEIYSG 600

Query: 392 CTNP-----KPFSAFLAACDTMDKPERAIKIFAKMR-QKLRPDIRTYELLFSLFGN---V 442
              P     K      +  D + + ERA   F ++R Q   PDI T   + S++G    V
Sbjct: 601 IIEPQAVLLKTLVLVYSKSDLLTETERA---FLELREQGFSPDITTLNAMVSIYGRRRMV 657

Query: 443 NAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCD 502
           +   E  N          +      M   +        +++L+ + A+GM  ++I     
Sbjct: 658 SKTNEILNFIKDSGFTPSLTTYNSLMYMYSRTEHFEKSEDILREIIAKGMKPDII----- 712

Query: 503 SKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKS 562
                   ++NTV+ +         A  IF +MK  G+ P+  TYN  I   +    F  
Sbjct: 713 --------SFNTVIFAYCRNGRMKEASRIFAEMKDFGLAPDVITYNTFIASYASDSMFIE 764

Query: 563 ASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL 602
           A  +V  M+++G  P   TY +LI         DEA + +
Sbjct: 765 AIDVVKYMIKNGCKPNQNTYNSLIDWFCKLNRRDEASSFI 804



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 110/559 (19%), Positives = 230/559 (41%), Gaps = 43/559 (7%)

Query: 153 GIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAV 212
           G+ P L  YN+ + +C +      A    + M +     ++VTY  LL +    +     
Sbjct: 286 GVAPDLYTYNTLISSCRRGSLYEEAAEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPREA 345

Query: 213 HEIWEDY-IKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRT-SEG 270
            E+ ++     ++ SI +    + ++ R   L  A E    MV   +   ++   T   G
Sbjct: 346 MEVLKEMEASGFAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSG 405

Query: 271 RLRSSRLDIPIPLNALPVMKVLRW--------SFSDVIHACGRTQNSGLAEQLMLQMQSL 322
             ++ + D      A+ V + +R         +F+ +I   G   N     ++  +++  
Sbjct: 406 FEKTGKDDY-----AMKVFEEMRVAGCQPNICTFNALIKMHGNRGNFVEMMKVFEEIKIC 460

Query: 323 GLQPSSHTYDGFIRAIVSDRGLRNGME-VLKIMQQNNLKPQDSTIATLSVECSKALELDL 381
              P   T++  + A+    G+ + +  V K M++    P+  T  TL    S+    D 
Sbjct: 461 ECVPDIVTWNTLL-AVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQ 519

Query: 382 AEALLDQ-ISRCTNP--KPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFS 437
           A A+  + +     P    ++A LAA       E++ K+ A+M+  + +P+  TY  L  
Sbjct: 520 AMAIYRRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSLLH 579

Query: 438 LFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELI 497
            + N                 +R++A+  ++    I+   + +K L+       ++ E  
Sbjct: 580 AYANGK-------------EVERMSALAEEIYSGIIEPQAVLLKTLVLVYSKSDLLTETE 626

Query: 498 QYFCDSKTPLGTPTYNTVLHSLVEAQESHRAM----EIFKQMKTCGIPPNAATYNIMIDC 553
           + F + +    +P   T L+++V      R +    EI   +K  G  P+  TYN ++  
Sbjct: 627 RAFLELREQGFSPDI-TTLNAMVSIYGRRRMVSKTNEILNFIKDSGFTPSLTTYNSLMYM 685

Query: 554 CSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHD 613
            S    F+ +  ++  ++  G  P  +++  +I      G   EA  +   +   G+  D
Sbjct: 686 YSRTEHFEKSEDILREIIAKGMKPDIISFNTVIFAYCRNGRMKEASRIFAEMKDFGLAPD 745

Query: 614 VLLYNT-ILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEAL 672
           V+ YNT I   A +   I+ I+ +++ M +N  +P+ +T + +   +  C  +     + 
Sbjct: 746 VITYNTFIASYASDSMFIEAID-VVKYMIKNGCKPNQNTYNSLIDWF--CKLNRRDEASS 802

Query: 673 QVLSMRMLCEEVSTLEEKR 691
            + ++R L   V+  EE+R
Sbjct: 803 FISNLRNLDPSVTKDEERR 821



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 45/217 (20%), Positives = 86/217 (39%), Gaps = 4/217 (1%)

Query: 483 LLKALGAEG---MIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCG 539
           ++  LG EG       L+    +    +    Y +++ +         A+ +FK+++  G
Sbjct: 191 IISVLGKEGRASFAASLLHDLRNDGVHIDIYAYTSLITAYASNGRYREAVMVFKKLEEEG 250

Query: 540 IPPNAATYNIMIDCCSIIRC-FKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEA 598
             P   TYN++++    +   +   + LV  M   G  P   TY  LI        ++EA
Sbjct: 251 CRPTLITYNVILNVYGKMGMPWSKIAGLVDSMKSSGVAPDLYTYNTLISSCRRGSLYEEA 310

Query: 599 LNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
             + + +   G   D + YN +L    +  R      ++++M  +   P   T + + S 
Sbjct: 311 AEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISA 370

Query: 659 YVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDFE 695
           Y   G  + AME    +  + +  +V T     S FE
Sbjct: 371 YARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFE 407


>gi|359487666|ref|XP_002277942.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Vitis vinifera]
          Length = 609

 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 77/364 (21%), Positives = 150/364 (41%), Gaps = 20/364 (5%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +F  VI+   +      A  ++  M++ G  PS  TY+  I        +     +LK M
Sbjct: 231 TFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEM 290

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT---NPKPFSAFLAACDTMDKP 411
               + P + T   L     +   +  A+ + +++ R     N   +++ +    +  K 
Sbjct: 291 VAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKL 350

Query: 412 ERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           + A+ +  KM    L+P++ TY  L              N F +    K    +  D+ +
Sbjct: 351 DEALGLQDKMSGMGLKPNVVTYNALI-------------NGFCKKKMLKEAREMLDDIGK 397

Query: 471 NNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHR 527
             +  + I+   L+ A G  G + +   L     D+       TYN ++           
Sbjct: 398 RGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKE 457

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A ++ K+M+  G+  +  TYNI++D        + A  L+  M   G  P  +TY ALI 
Sbjct: 458 ARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMFEVGLNPSHLTYNALID 517

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
                G+   ALN+  L+  +G   +++ YN ++K  C KG+++    ++ +M +  + P
Sbjct: 518 GYFREGNSTAALNVRTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIP 577

Query: 648 DPST 651
           + +T
Sbjct: 578 NRTT 581



 Score = 79.0 bits (193), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 104/233 (44%), Gaps = 6/233 (2%)

Query: 460 RINAIE---MDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYN 513
           RI  +E    +M R  I  + ++   ++  L   G  ++      D K    +P   TYN
Sbjct: 209 RIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYN 268

Query: 514 TVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRD 573
           T++    +A +  +A  + K+M    I PN  T+NI+ID         +A  +   M R 
Sbjct: 269 TIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQ 328

Query: 574 GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVI 633
           G  P  +TY +LI  L   G  DEAL L D +S  G+  +V+ YN ++   C+K  +   
Sbjct: 329 GLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEA 388

Query: 634 EFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
             +++ + +  + P+  T + +   Y   G  + A     ++    +C  VST
Sbjct: 389 REMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVST 441



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 84/346 (24%), Positives = 143/346 (41%), Gaps = 53/346 (15%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +F+ +I    R +N   A+++  +MQ  GLQP+  TY+  I  + S+  L   + +   M
Sbjct: 301 TFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKM 360

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKP 411
               LKP   T   L     K   L  A  +LD I +     N   F+  + A     + 
Sbjct: 361 SGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRM 420

Query: 412 ERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           + A  + + M    + P++ TY  L   F        EGN    V  A++          
Sbjct: 421 DDAFLLRSMMLDTGVCPNVSTYNCLIVGF------CREGN----VKEARK---------- 460

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAME 530
                       L K +   G+  +L+             TYN ++ +L +  E+ +A+ 
Sbjct: 461 ------------LAKEMEGNGLKADLV-------------TYNILVDALCKKGETRKAVR 495

Query: 531 IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASAL--VSMMVRDGFYPQTMTYTALIKI 588
           +  +M   G+ P+  TYN +ID     R   S +AL   ++M + G     +TY  LIK 
Sbjct: 496 LLDEMFEVGLNPSHLTYNALID--GYFREGNSTAALNVRTLMEKKGRRANIVTYNVLIKG 553

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIE 634
             + G  +EA  LL+ +  +G+  +   Y+ +  +  EKG I  I+
Sbjct: 554 FCNKGKLEEANRLLNEMLEKGLIPNRTTYDILRDEMMEKGFIPDID 599



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 97/220 (44%), Gaps = 8/220 (3%)

Query: 454 QVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLG----T 509
            V +AK++     +M R  +Q + ++  +L+  L + G + E +    D  + +G     
Sbjct: 314 NVTAAKKVFE---EMQRQGLQPNVVTYNSLINGLCSNGKLDEALG-LQDKMSGMGLKPNV 369

Query: 510 PTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSM 569
            TYN +++   + +    A E+   +   G+ PN  T+N +ID          A  L SM
Sbjct: 370 VTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSM 429

Query: 570 MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
           M+  G  P   TY  LI      G+  EA  L   +   G+  D++ YN ++   C+KG 
Sbjct: 430 MLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGE 489

Query: 630 IDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAM 669
                 ++++M +  + P   T + +  GY   G   +A+
Sbjct: 490 TRKAVRLLDEMFEVGLNPSHLTYNALIDGYFREGNSTAAL 529



 Score = 56.2 bits (134), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 77/367 (20%), Positives = 148/367 (40%), Gaps = 37/367 (10%)

Query: 106 VMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFL 165
           V   ++ M  + IG+N   + +++  LCK G  ++A +++  + + +G  P +  YN+ +
Sbjct: 213 VESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDM-KAWGFSPSVITYNTII 271

Query: 166 GACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSL 225
               K   M  A+  L  M ++ +  NE+T+  L+      +N++A  +++E+  +    
Sbjct: 272 DGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQ--- 328

Query: 226 SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNA 285
               L+  V ++  L +   +   L   + L        ++ S   L+ + +     +N 
Sbjct: 329 ---GLQPNVVTYNSLINGLCSNGKLDEALGLQ-------DKMSGMGLKPNVVTYNALING 378

Query: 286 LPVMKVLR------------------WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPS 327
               K+L+                   +F+ +I A G+      A  L   M   G+ P+
Sbjct: 379 FCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPN 438

Query: 328 SHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLD 387
             TY+  I     +  ++   ++ K M+ N LK    T   L     K  E   A  LLD
Sbjct: 439 VSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLD 498

Query: 388 QISRCT-NPK--PFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVN 443
           ++     NP    ++A +           A+ +   M +K  R +I TY +L   F N  
Sbjct: 499 EMFEVGLNPSHLTYNALIDGYFREGNSTAALNVRTLMEKKGRRANIVTYNVLIKGFCN-K 557

Query: 444 APYEEGN 450
              EE N
Sbjct: 558 GKLEEAN 564



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/157 (22%), Positives = 72/157 (45%)

Query: 513 NTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVR 572
           N +L SLV+         ++K+M    I  N  T++++I+    +  F+ A  +V  M  
Sbjct: 198 NPMLVSLVKEGRIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKA 257

Query: 573 DGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDV 632
            GF P  +TY  +I      G   +A  LL  +  + I  + + +N ++   C    +  
Sbjct: 258 WGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTA 317

Query: 633 IEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAM 669
            + + E+M +  +QP+  T + + +G  + G  + A+
Sbjct: 318 AKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEAL 354


>gi|449529622|ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 618

 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 92/414 (22%), Positives = 171/414 (41%), Gaps = 49/414 (11%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQN------NLKPQDST 365
           A +L L+MQ LG  P++ TY   I+ +     +   +++ K M  +      N KP   T
Sbjct: 180 ATRLFLRMQKLGCTPNAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGVIT 239

Query: 366 IATLSVECSKALELDLAEALLDQI---SRCTNPKPFSAFLAACDTMDKPERAIKIFAKM- 421
            + +     K    D A+ L +++       +   +S  +       K +++  +F +M 
Sbjct: 240 YSIIIDGLCKVGREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEMV 299

Query: 422 RQKLRPDIRTYELLFSLF---GNV----------------------NAPYEEGNMFSQVD 456
            Q ++PD+ T+ +L       G V                      N+  +   M   ++
Sbjct: 300 DQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDLN 359

Query: 457 SAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCD----SKTPLGTPTY 512
           SA+ +    + M    ++   IS   L+        ++E +  + +     K+P    TY
Sbjct: 360 SAREL---FLSMPSKGLEPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSP-NVTTY 415

Query: 513 NTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVR 572
            T+L  L +  +   A ++F  MKT G+  N+  Y I +D      C   A  L + +  
Sbjct: 416 GTLLKGLFQKGKVGDAKKLFGVMKTYGVSANSQIYGIFLDGLCKNDCLFEAMELFNELKS 475

Query: 573 DGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDV 632
             F      Y+ LI  L   G  + A  L + +S EG+  DV+ YN ++   C+ G++D 
Sbjct: 476 YNFKLNIENYSCLIDGLCKAGKLETAWELFEKLSQEGLQPDVVTYNIMIHGFCKVGQVDN 535

Query: 633 IEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGF-HNSAMEALQVLSMRMLCEEVS 685
              + E+M +N   PD      +    + CGF   + +E +  L  +M+ ++VS
Sbjct: 536 ANILFEKMEENGCTPD-----IIAYNTLLCGFCEGNKLEEVIKLLHKMVQKDVS 584



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 77/368 (20%), Positives = 150/368 (40%), Gaps = 20/368 (5%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           ++S +I    +      A++L  +M++ G+ P   +Y   I              +   M
Sbjct: 239 TYSIIIDGLCKVGREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEM 298

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLD-QISRCTNPK--PFSAFLAACDTMDKP 411
               ++P   T + L     K  ++  A+ LL+  I R   P    +++ +     +   
Sbjct: 299 VDQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDL 358

Query: 412 ERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
             A ++F  M  K L PD  +Y  L + +       E  N+++++        +++  + 
Sbjct: 359 NSARELFLSMPSKGLEPDEISYTTLINGYCKTWKVKEAMNLYNEM--------LQVGKSP 410

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKT---PLGTPTYNTVLHSLVEAQESHR 527
           N   +       LLK L  +G + +  + F   KT      +  Y   L  L +      
Sbjct: 411 NVTTYG-----TLLKGLFQKGKVGDAKKLFGVMKTYGVSANSQIYGIFLDGLCKNDCLFE 465

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           AME+F ++K+     N   Y+ +ID        ++A  L   + ++G  P  +TY  +I 
Sbjct: 466 AMELFNELKSYNFKLNIENYSCLIDGLCKAGKLETAWELFEKLSQEGLQPDVVTYNIMIH 525

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
                G  D A  L + +   G   D++ YNT+L   CE  +++ +  ++ +M Q  V P
Sbjct: 526 GFCKVGQVDNANILFEKMEENGCTPDIIAYNTLLCGFCEGNKLEEVIKLLHKMVQKDVSP 585

Query: 648 DPSTCHFV 655
           + ++C  V
Sbjct: 586 NAASCTIV 593



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 77/182 (42%), Gaps = 6/182 (3%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TY T++  L        A  +F +M+  G  PNA TY  +I           A  L   M
Sbjct: 163 TYTTLIKGLCMEHRISEATRLFLRMQKLGCTPNAVTYGTLIKGLCQTGNVNIALKLHKEM 222

Query: 571 VRDG------FYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKA 624
           + D         P  +TY+ +I  L   G  DEA  L + +  +G+  DV+ Y+T++   
Sbjct: 223 LNDASQYGVNCKPGVITYSIIIDGLCKVGREDEAKELFEEMKAQGMIPDVISYSTLIHGF 282

Query: 625 CEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEV 684
           C  G+ D  + + ++M    VQPD  T   +       G    A + L+V+  R +   +
Sbjct: 283 CCAGKWDQSKHLFDEMVDQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNL 342

Query: 685 ST 686
            T
Sbjct: 343 IT 344



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/181 (22%), Positives = 84/181 (46%), Gaps = 8/181 (4%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC-CSIIRCFKSASALVSM 569
           ++N +L  L +     +   ++ +M+  G+ P+  T +I+ +C C++ R  ++ +A+  +
Sbjct: 93  SFNRLLGGLAKINHYSQLFSLYNEMRLAGLSPDLFTLSILANCLCNVNRVSEALAAMAGI 152

Query: 570 MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
           + R G+ P  +TYT LIK L       EA  L   +   G   + + Y T++K  C+ G 
Sbjct: 153 L-RRGYIPNVVTYTTLIKGLCMEHRISEATRLFLRMQKLGCTPNAVTYGTLIKGLCQTGN 211

Query: 630 IDVIEFIIEQMHQNKVQ------PDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEE 683
           +++   + ++M  +  Q      P   T   +  G    G  + A E  + +  + +  +
Sbjct: 212 VNIALKLHKEMLNDASQYGVNCKPGVITYSIIIDGLCKVGREDEAKELFEEMKAQGMIPD 271

Query: 684 V 684
           V
Sbjct: 272 V 272


>gi|115440343|ref|NP_001044451.1| Os01g0783100 [Oryza sativa Japonica Group]
 gi|20804869|dbj|BAB92551.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113533982|dbj|BAF06365.1| Os01g0783100 [Oryza sativa Japonica Group]
          Length = 684

 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 143/661 (21%), Positives = 253/661 (38%), Gaps = 87/661 (13%)

Query: 58  QIVDALCRGERSRASHLLLNLGHAHHSLGADDFFH----ILNYCARSPDPLFVMETWRMM 113
           +++  LCR  R R S     L  A  S  A D F     +  YC        +    R++
Sbjct: 83  KLIRNLCR--RGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQ----LDAARRLI 136

Query: 114 EEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHS 173
               +  +   Y  +++ LC  G + EA +L+  +  R G  P +  Y   L A  K   
Sbjct: 137 ASMPVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHR-GCQPSVVTYTVLLEAVCKSTG 195

Query: 174 MVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKF 233
              A   LD M ++    N VTY  ++     +  +    E          LS +  +  
Sbjct: 196 FGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLN------RLSSYGFQPD 249

Query: 234 VWSFTR-LRDLKSA--YETLQHMVALAMMGKLYINRTSEGRL-----RSSRLDIPIPL-- 283
             S+T  L+ L +A  +E ++ + A  M      N  +   L     R   ++  I +  
Sbjct: 250 TVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLE 309

Query: 284 ----NALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIV 339
               +       L     + I   GR  +   A Q +  M S G  P + +Y   ++ + 
Sbjct: 310 QMSGHGCAANTTLCNIVINTICKQGRVDD---AFQFLNNMGSYGCSPDTISYTTVLKGLC 366

Query: 340 SDRGLRNGMEVLKIMQQNNLKPQDSTIAT-LSVECSKALELDLAEALLDQISR--C-TNP 395
                 +  E+LK M + N  P + T  T + + C K L ++ A  L++Q+S   C  N 
Sbjct: 367 RAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGL-IEQATMLIEQMSEHGCEVNI 425

Query: 396 KPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQV 455
             ++A +       + + A+++F  M    +P+  TY  L +   N              
Sbjct: 426 VTYNALVNGFCVQGRVDSALELFYSM--PCKPNTITYTTLLTGLCN-------------- 469

Query: 456 DSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTV 515
             A+R++A                         A  ++ E++Q  C         T+N +
Sbjct: 470 --AERLDA-------------------------AAELLAEMLQKDCAPNVV----TFNVL 498

Query: 516 LHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGF 575
           +    +      A+E+ +QM   G  PN  TYN ++D  +     + A  L+  +V +G 
Sbjct: 499 VSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGV 558

Query: 576 YPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEF 635
            P  +TY+++I +L      +EA+ +  +V   G+    ++YN IL   C++   D    
Sbjct: 559 SPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAID 618

Query: 636 IIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDFE 695
               M  N   P+  T   +  G  N  F     + L+ L  R +  + + LEE R  F 
Sbjct: 619 FFAYMVSNGCMPNELTYITLIEGLANEDFLKETRDLLRELCSRGVLNK-NLLEEWRPKFS 677

Query: 696 D 696
           +
Sbjct: 678 N 678


>gi|222635128|gb|EEE65260.1| hypothetical protein OsJ_20463 [Oryza sativa Japonica Group]
          Length = 1443

 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 81/386 (20%), Positives = 145/386 (37%), Gaps = 55/386 (14%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNG--MEVLKI 353
           F+ ++    R+     A QL+  M+   ++P   +++  I A      L  G  +E+L  
Sbjct: 224 FNAMMGVYARSGRFDDARQLLDAMRDQDIEPDLVSFNTLINARAKSGCLAAGVALELLHE 283

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI--SRCTNPKPFSAFLAACDTMDKP 411
           ++Q  L+P   T  TL   CS+   LD A A+ +++  S C                   
Sbjct: 284 VRQAGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASEC------------------- 324

Query: 412 ERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471
                         RPD+ TY  + S+ G      E   MF +             +   
Sbjct: 325 --------------RPDLWTYNAMVSVHGRCGKAQEAELMFKE-------------LVEK 357

Query: 472 NIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLG----TPTYNTVLHSLVEAQESHR 527
             Q   ++  +LL A   EG + E ++  C+     G      TYNT++H   +      
Sbjct: 358 GFQPDAVTYNSLLYAFAKEGDV-ERVERVCEELVKAGFRKDGITYNTMIHMYGKMGRLDL 416

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A+ ++ +M+  G  P+A TY +++D    +     A  ++  M   G  P  +T++ALI 
Sbjct: 417 ALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLEEMADAGLKPTLVTFSALIC 476

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
                G  D+A    D +   G+  D L Y  +L           +  +   M ++  +P
Sbjct: 477 AYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVFARSDETRKLMVLYRAMIKDGYKP 536

Query: 648 DPSTCHFVFSGYVNCGFHNSAMEALQ 673
           D      + +       H+     +Q
Sbjct: 537 DDGLYQVLLAALAKGNEHDEIEGVIQ 562



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 81/397 (20%), Positives = 162/397 (40%), Gaps = 44/397 (11%)

Query: 295 SFSDVIHACGRTQ--NSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
           SF+ +I+A  ++    +G+A +L+ +++  GL+P + TY+  I A      L + + V +
Sbjct: 258 SFNTLINARAKSGCLAAGVALELLHEVRQAGLRPDAITYNTLISACSQGSNLDDAVAVFE 317

Query: 353 IMQQNNLKPQDSTI-ATLSV--ECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMD 409
            M  +  +P   T  A +SV   C KA E +L    L +     +   +++ L A     
Sbjct: 318 EMIASECRPDLWTYNAMVSVHGRCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEG 377

Query: 410 KPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
             ER  ++  ++ +   R D  TY  +  ++G +      G +   +     + AI    
Sbjct: 378 DVERVERVCEELVKAGFRKDGITYNTMIHMYGKM------GRLDLALGLYDEMRAI---- 427

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQES 525
                    ++   L+ +LG    I E   +++   D+       T++ ++ +  ++   
Sbjct: 428 ---GCTPDAVTYTVLVDSLGKMDRISEAGKVLEEMADAGLKPTLVTFSALICAYAKSGRQ 484

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
             A   F +M   G+ P+   Y +M+D  +     +    L   M++DG+ P    Y  L
Sbjct: 485 DDAERTFDRMVESGVKPDRLAYLVMLDVFARSDETRKLMVLYRAMIKDGYKPDDGLYQVL 544

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDV--------LLYNTILKKA-CEKGRIDVIEFI 636
           +  L    + DE         +EG+  D+        L+ ++IL KA C    I     +
Sbjct: 545 LAALAKGNEHDE---------IEGVIQDMEAVFEMNPLVISSILIKAEC----ISQGASL 591

Query: 637 IEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           +++      +PD  +   +   Y   G H   +  L+
Sbjct: 592 LKRACLQGYEPDGKSLLSILDAYEKMGKHEKGLSLLE 628



 Score = 55.8 bits (133), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 65/146 (44%), Gaps = 3/146 (2%)

Query: 479 SMKNLLKALGAEGMIREL---IQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQM 535
           S+  +++AL  +G + EL   +Q   D    +   T   +L +  +A +    M+I+  M
Sbjct: 819 SVNGMMRALIVDGRLDELYVVVQELQDLDIKISKSTVLLMLEAFAKAGDVFEVMKIYNGM 878

Query: 536 KTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDF 595
           K  G  PN   Y IMI      + F+    +V+ M   GF P  +    L+ +    G+F
Sbjct: 879 KAAGYLPNMHLYRIMISLLCHNKRFRDVELMVAEMEGAGFKPDLVVLNTLLLMYTGTGNF 938

Query: 596 DEALNLLDLVSLEGIPHDVLLYNTIL 621
           D  + +   +   G+  D   YNT++
Sbjct: 939 DRTIEVYHSILEAGLEPDEDTYNTLI 964



 Score = 45.8 bits (107), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 99/243 (40%), Gaps = 30/243 (12%)

Query: 511  TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
            +Y  +L +  +A+   +A  +F++M+T G   N + Y++M+      R    A  L+S M
Sbjct: 994  SYKILLAASGKAKLWEQADLLFEEMRTKGYRLNRSIYHMMMKIYRNARNHSKAEHLLSAM 1053

Query: 571  VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
              DG  P   T   L+      G  DEA  +L+ +    +    L Y+T+L         
Sbjct: 1054 KEDGIEPTIATMHILMTSYGTSGHPDEAEKVLNSLKSSNLEISTLPYSTVLDAYLRNRDY 1113

Query: 631  DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVN----CGFHNSAMEALQVLS-------MRM 679
             +    + +M ++ V+PD    H V++ ++     C   + A+  L+ L        +R+
Sbjct: 1114 SLGITKLLEMKRDGVEPD----HQVWTSFIRAASLCEQTDDAILLLKSLQDCGFDLPIRL 1169

Query: 680  LCEEVSTL-EEKRSDFEDLILAEDSEAESRILQFCEDSNENLAFTAALLQLRWCTIVGFP 738
            L E  S+L  E  S  E L   EDS               +L F  AL  L W       
Sbjct: 1170 LTERTSSLFTEVDSFLEKLGTLEDS--------------ASLNFVNALEDLLWAFERRAT 1215

Query: 739  ISW 741
             SW
Sbjct: 1216 ASW 1218



 Score = 42.4 bits (98), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 65/359 (18%), Positives = 141/359 (39%), Gaps = 32/359 (8%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           W+++ ++   GR   +  AE +  ++   G QP + TY+  + A   +  +     V + 
Sbjct: 329 WTYNAMVSVHGRCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEE 388

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR--CT-NPKPFSAFLAACDTMDK 410
           + +   +    T  T+     K   LDLA  L D++    CT +   ++  + +   MD+
Sbjct: 389 LVKAGFRKDGITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDR 448

Query: 411 PERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
              A K+  +M    L+P + T+  L   +       +    F +             M 
Sbjct: 449 ISEAGKVLEEMADAGLKPTLVTFSALICAYAKSGRQDDAERTFDR-------------MV 495

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYF----CDSKTPLGTPTYNTVLHSLVEAQES 525
            + ++   ++   +L         R+L+  +     D   P     Y  +L +L +  E 
Sbjct: 496 ESGVKPDRLAYLVMLDVFARSDETRKLMVLYRAMIKDGYKP-DDGLYQVLLAALAKGNEH 554

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
                + + M+           +I+I       C    ++L+      G+ P   +  ++
Sbjct: 555 DEIEGVIQDMEAVFEMNPLVISSILIKA----ECISQGASLLKRACLQGYEPDGKSLLSI 610

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIP--HDVLLYNTILKKACEKGRI-DVI-EFIIEQM 640
           +      G  ++ L+LL+ +  + +P  H+++   +I+   C+ G+I D I E+  +QM
Sbjct: 611 LDAYEKMGKHEKGLSLLEWIR-QHVPNSHNLISECSIM-LLCKNGKIVDAIQEYSRKQM 667



 Score = 40.4 bits (93), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 54/270 (20%), Positives = 104/270 (38%), Gaps = 20/270 (7%)

Query: 313  EQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVE 372
            E ++ +M+  G +P     +  +            +EV   + +  L+P + T  TL V 
Sbjct: 907  ELMVAEMEGAGFKPDLVVLNTLLLMYTGTGNFDRTIEVYHSILEAGLEPDEDTYNTLIVM 966

Query: 373  CSKALELDLAEALLDQIS-RCTNPK--PFSAFLAACDTMDKPERAIKIFAKMRQK-LRPD 428
             S+    +    LL ++  R   PK   +   LAA       E+A  +F +MR K  R +
Sbjct: 967  YSRNFRPEEGFTLLYEMGKRGLTPKLESYKILLAASGKAKLWEQADLLFEEMRTKGYRLN 1026

Query: 429  IRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALG 488
               Y ++  ++ N     +  ++ S              M  + I+ +  +M  L+ + G
Sbjct: 1027 RSIYHMMMKIYRNARNHSKAEHLLSA-------------MKEDGIEPTIATMHILMTSYG 1073

Query: 489  AEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAA 545
              G   E   ++     S   + T  Y+TVL + +  ++    +    +MK  G+ P+  
Sbjct: 1074 TSGHPDEAEKVLNSLKSSNLEISTLPYSTVLDAYLRNRDYSLGITKLLEMKRDGVEPDHQ 1133

Query: 546  TYNIMIDCCSIIRCFKSASALVSMMVRDGF 575
             +   I   S+      A  L+  +   GF
Sbjct: 1134 VWTSFIRAASLCEQTDDAILLLKSLQDCGF 1163


>gi|218184541|gb|EEC66968.1| hypothetical protein OsI_33625 [Oryza sativa Indica Group]
          Length = 1351

 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 85/403 (21%), Positives = 177/403 (43%), Gaps = 26/403 (6%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           +S++  I   G+ +    A +++ +M++ G +P   T+   I+ +     + +  +V   
Sbjct: 310 YSYTICIRVLGQARRFDEAYRILAEMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWK 369

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPER 413
           M++++ KP   T  TL  + +   E      + + +          A+ A  D + +  R
Sbjct: 370 MKKSDQKPDRVTYITLLDKFADNGESQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGR 429

Query: 414 ---AIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVD-SAKRINAIEMDM 468
              A+++F +M+QK + P+  +Y  L S F   +   +   +F  +D    + N     +
Sbjct: 430 VFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKYMDIHGPKPNGYTHVL 489

Query: 469 ARNNIQHSHISMKNLLKA--LGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESH 526
             N    S  S+K + +   + ++G++ +++               N VL  L ++    
Sbjct: 490 FINYYGKSGESIKAIQRYELMKSKGIVPDVV-------------AGNAVLFGLAKSGRLG 536

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
            A  +F ++K  G+ P+  TY +MI CCS    F  A  +   M+ +   P  +   +LI
Sbjct: 537 MAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLVVNSLI 596

Query: 587 KILLDYGDFDEALNL---LDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
             L   G  DEA  +   L  ++LE  P D   YNT+L     +G++  +  ++E+M+ +
Sbjct: 597 DTLYKAGRGDEAWQIFYQLKEMNLE--PTDG-TYNTLLAGLGREGKVKEVMHLLEEMYHS 653

Query: 644 KVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
              P+  T + +       G  N A++ L  ++ +    ++S+
Sbjct: 654 NYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSS 696



 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 142/712 (19%), Positives = 260/712 (36%), Gaps = 104/712 (14%)

Query: 55   TQMQIVDALCRGER-SRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMM 113
            T   ++  LC   R S A  +   +  +        +  +L+  A + +   VME W  M
Sbjct: 346  THTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFADNGESQSVMEIWNAM 405

Query: 114  EEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHS 173
            +      N   Y  ++ ALC+ G + EA  +   + ++ GI P    YNS +    K   
Sbjct: 406  KADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQK-GIVPEQYSYNSLISGFLKADR 464

Query: 174  MVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWE-DYIKHYSL--SIFSL 230
               A      MD  + G     YT +L +  + K+  ++  I   + +K   +   + + 
Sbjct: 465  FGDALELFKYMD--IHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAG 522

Query: 231  RKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRL--RSSRLDIPIPL----- 283
               ++   +   L  A      + A+ +     I  T   +   ++S+ D  + +     
Sbjct: 523  NAVLFGLAKSGRLGMAKRVFHELKAMGVSPDT-ITYTMMIKCCSKASKFDEAVKIFYDMI 581

Query: 284  --NALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSD 341
              N +P + V+  S  D ++  GR      A Q+  Q++ + L+P+  TY+  +  +  +
Sbjct: 582  ENNCVPDVLVVN-SLIDTLYKAGRGDE---AWQIFYQLKEMNLEPTDGTYNTLLAGLGRE 637

Query: 342  RGLRNGMEVLKIMQQNNLKPQDSTIAT-LSVECSKALELDLAEALLDQISRCTNPKPFSA 400
              ++  M +L+ M  +N  P   T  T L   C      D  + L    ++   P   S+
Sbjct: 638  GKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPD-LSS 696

Query: 401  FLAACDTMDKPER---AIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDS 457
            +      + K ER   A  IF +M++ L PD  T   +   F  +    E  ++  +   
Sbjct: 697  YNTVIYGLVKEERYNEAFSIFCQMKKVLIPDYATLCTILPSFVKIGLMKEALHIIKEY-- 754

Query: 458  AKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIR------------------ELIQY 499
                       ++ +    H  M+ +LK  G E  I                    LI++
Sbjct: 755  ------FLQPGSKTDRSSCHSLMEGILKKAGTEKSIEFAEIIASSGITLDDFFLCPLIKH 808

Query: 500  FCDSK----------------TPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPN 543
             C  K                  L T +YN+++  LV+      A  +F +MK  G  P+
Sbjct: 809  LCKQKKALEAHELVKKFKSFGVSLKTGSYNSLICGLVDENLIDIAEGLFAEMKELGCGPD 868

Query: 544  AATYNIMIDCC-----------------------------SII------RCFKSASALVS 568
              TYN+++D                               +II      R  + A  L  
Sbjct: 869  EFTYNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYY 928

Query: 569  MMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
             ++  GF P   TY  L+  LL  G  ++A NL + +   G   +  +YN +L      G
Sbjct: 929  NLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAG 988

Query: 629  RIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEAL-QVLSMRM 679
              + +  + + M    + PD  +   +       G  N  +    Q+L M +
Sbjct: 989  NTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGL 1040



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 92/427 (21%), Positives = 170/427 (39%), Gaps = 68/427 (15%)

Query: 239 RLRDLKSAYETLQHMVALAMMGK---LYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWS 295
           R+ D+   ++ +Q  +  A +G    ++     EG LRS+    P+   ALPVMK     
Sbjct: 184 RVGDMAEVFDVMQRQIVKANVGTFAAIFGGLGVEGGLRSA----PV---ALPVMK----- 231

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
                                      G+  +++TY+G +  +V     R  +EV K+M 
Sbjct: 232 -------------------------EAGIVLNAYTYNGLVYFLVKSGFDREALEVYKVMM 266

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQI-SRCTNPKPFSAFLAACDTMDKPER- 413
            + + P   T + L V   K  +++    LL ++ +    P  +S +      + +  R 
Sbjct: 267 VDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYS-YTICIRVLGQARRF 325

Query: 414 --AIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSA----KRINAIEM 466
             A +I A+M  +  +PD+ T+ +L  +  +     +  ++F ++  +     R+  I +
Sbjct: 326 DEAYRILAEMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITL 385

Query: 467 --DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQE 524
               A N    S + + N +KA G    +                  Y  V+ +L +   
Sbjct: 386 LDKFADNGESQSVMEIWNAMKADGYNDNV----------------VAYTAVIDALCQVGR 429

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
              A+E+F +MK  GI P   +YN +I        F  A  L   M   G  P   T+  
Sbjct: 430 VFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKYMDIHGPKPNGYTHVL 489

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
            I      G+  +A+   +L+  +GI  DV+  N +L    + GR+ + + +  ++    
Sbjct: 490 FINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMG 549

Query: 645 VQPDPST 651
           V PD  T
Sbjct: 550 VSPDTIT 556



 Score = 75.9 bits (185), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 97/206 (47%), Gaps = 3/206 (1%)

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIREL---IQYFCDSKTPLGTPTYNTVLHSLVEAQE 524
           M R  ++ +  +   +   LG EG +R     +    ++   L   TYN +++ LV++  
Sbjct: 195 MQRQIVKANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLVYFLVKSGF 254

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
              A+E++K M   G+ P+  TY++++      R  ++   L+  M   G  P   +YT 
Sbjct: 255 DREALEVYKVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTI 314

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
            I++L     FDEA  +L  +  EG   DV+ +  +++  C+ GRI   + +  +M ++ 
Sbjct: 315 CIRVLGQARRFDEAYRILAEMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSD 374

Query: 645 VQPDPSTCHFVFSGYVNCGFHNSAME 670
            +PD  T   +   + + G   S ME
Sbjct: 375 QKPDRVTYITLLDKFADNGESQSVME 400



 Score = 66.2 bits (160), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 123/600 (20%), Positives = 229/600 (38%), Gaps = 72/600 (12%)

Query: 112 MMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKL 171
           +M+E  I LN   Y  ++  L K G+  EA   +Y +    G+ P +  Y+  + A  K 
Sbjct: 229 VMKEAGIVLNAYTYNGLVYFLVKSGFDREALE-VYKVMMVDGVVPSVRTYSVLMVAFGKR 287

Query: 172 HSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIW---------EDYIKH 222
             +      L  M++  V  N  +YT  +++    +     + I           D I H
Sbjct: 288 RDVETVLWLLREMEAHGVKPNVYSYTICIRVLGQARRFDEAYRILAEMENEGCKPDVITH 347

Query: 223 YSLSIFSLRKFVWSFTRLRDLKSAYETLQ-------HMVALAMMGKLYINRTSEGRLRSS 275
             L      + +    R+ D K  +  ++        +  + ++ K   N  S+     S
Sbjct: 348 TVLI-----QVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFADNGESQ-----S 397

Query: 276 RLDIPIPLNALPVMKVLRW-----SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHT 330
            ++I    NA   MK   +     +++ VI A  +      A ++  +M+  G+ P  ++
Sbjct: 398 VMEI---WNA---MKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYS 451

Query: 331 YDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL---------SVECSKALELDL 381
           Y+  I   +      + +E+ K M  +  KP   T             S++  +  EL  
Sbjct: 452 YNSLISGFLKADRFGDALELFKYMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMK 511

Query: 382 AEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFG 440
           ++ ++  +         +A L       +   A ++F +++   + PD  TY ++     
Sbjct: 512 SKGIVPDVV------AGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCS 565

Query: 441 NVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYF 500
                       S+ D A +I     DM  NN     + + +L+  L   G   E  Q F
Sbjct: 566 KA----------SKFDEAVKIF---YDMIENNCVPDVLVVNSLIDTLYKAGRGDEAWQIF 612

Query: 501 CDSKTPLGTPT---YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSII 557
              K     PT   YNT+L  L    +    M + ++M     PPN  TYN ++DC    
Sbjct: 613 YQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKN 672

Query: 558 RCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLY 617
                A  ++  M   G  P   +Y  +I  L+    ++EA ++   +    IP D    
Sbjct: 673 GAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQMKKVLIP-DYATL 731

Query: 618 NTILKKACEKGRI-DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
            TIL    + G + + +  I E   Q   + D S+CH +  G +       ++E  ++++
Sbjct: 732 CTILPSFVKIGLMKEALHIIKEYFLQPGSKTDRSSCHSLMEGILKKAGTEKSIEFAEIIA 791



 Score = 65.9 bits (159), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 72/345 (20%), Positives = 134/345 (38%), Gaps = 43/345 (12%)

Query: 311  LAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLS 370
            +AE L  +M+ LG  P   TY+  + A+     +    E+LK+ ++ + K  +ST  T  
Sbjct: 852  IAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIE---EMLKVQEEMHRKGYESTYVT-- 906

Query: 371  VECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAK-MRQKLRPDI 429
                                       ++  ++      + E+AI ++   M Q   P  
Sbjct: 907  ---------------------------YNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTP 939

Query: 430  RTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGA 489
             TY  L           +  N+F+++        +E     N   ++   + N  +  G 
Sbjct: 940  CTYGPLLDGLLKAGRIEDAENLFNEM--------LEYGCKANCTIYN--ILLNGHRIAGN 989

Query: 490  EGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNI 549
               +  L Q   D        +Y  ++ +L +A + +  +  F+Q+   G+ P+  TYN+
Sbjct: 990  TEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNL 1049

Query: 550  MIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEG 609
            +ID     +  + A +L + M + G  P   TY +LI  L   G   EA  + + +  +G
Sbjct: 1050 LIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLTKG 1109

Query: 610  IPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHF 654
               +V  YN +++     G  D       +M      P+ STCH 
Sbjct: 1110 WKPNVFTYNALIRGYSVSGSTDSAYAAYGRMIVGGCLPNSSTCHI 1154



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 105/244 (43%), Gaps = 17/244 (6%)

Query: 489  AEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYN 548
            AE +  E+++Y C +   +    YN +L+    A  + +   +F+ M   GI P+  +Y 
Sbjct: 958  AENLFNEMLEYGCKANCTI----YNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYT 1013

Query: 549  IMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLE 608
            I+ID                 ++  G  P  +TY  LI  L      +EA++L + +  +
Sbjct: 1014 IIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKK 1073

Query: 609  GIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSA 668
            GI  ++  YN+++    + G+      + E++     +P+  T + +  GY   G  +SA
Sbjct: 1074 GIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLTKGWKPNVFTYNALIRGYSVSGSTDSA 1133

Query: 669  MEA---------LQVLSMRMLCEEVSTLEEKRSDFEDLIL----AEDSEAESRILQFCED 715
              A         L   S   + E + T  +  SD  ++I+    AE   A SR  +FC  
Sbjct: 1134 YAAYGRMIVGGCLPNSSTCHIHELMKTFLKGDSDSYEIIVTFINAEGMLAYSRAWKFCIS 1193

Query: 716  SNEN 719
            S E+
Sbjct: 1194 SRED 1197



 Score = 48.1 bits (113), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 32/148 (21%), Positives = 68/148 (45%)

Query: 511  TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
            TYNT++  LV+++   +A++++  + + G  P   TY  ++D        + A  L + M
Sbjct: 906  TYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEM 965

Query: 571  VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
            +  G       Y  L+      G+ ++  +L   +  +GI  D+  Y  I+   C+ G++
Sbjct: 966  LEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQL 1025

Query: 631  DVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
            +       Q+ +  ++PD  T + +  G
Sbjct: 1026 NDGLTYFRQLLEMGLEPDLITYNLLIDG 1053


>gi|124360736|gb|ABN08713.1| Pentatricopeptide repeat [Medicago truncatula]
          Length = 479

 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 82/171 (47%), Gaps = 1/171 (0%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC-CSIIRCFKSASALVSM 569
           +Y TV   LVE     RA+  +K+M+  GIPP   + NI+I   C      +SA  L   
Sbjct: 122 SYLTVFDILVEENHVKRAIGFYKEMREKGIPPTVVSLNILIKALCKNEETVESAFRLFRE 181

Query: 570 MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
           M   G  P + TY  LI  L   G   +A  LLD +  +G+   V+ Y +++   C+   
Sbjct: 182 MPNRGCQPDSYTYGTLINGLCKLGKISQAKELLDEMEEKGLSPSVVSYTSLIHGLCQSNN 241

Query: 630 IDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRML 680
           +D    ++E+M  N ++P+  T   +  G    G  + AME L+V+  R L
Sbjct: 242 LDEAIELLEEMIINGIEPNVFTYSSLMDGLCKSGHSSQAMELLEVMVRRRL 292



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 68/303 (22%), Positives = 129/303 (42%), Gaps = 48/303 (15%)

Query: 382 AEALLDQISRCTNPKPFSAFLAAC---DTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFS 437
           AE +L+++ +         FL  C     + +P  AI++F KM   +++P  ++Y  +F 
Sbjct: 69  AEGMLERMKQEDCEVTEDVFLTICRGYGRVHRPLDAIRVFHKMEDFQVKPTQKSYLTVF- 127

Query: 438 LFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELI 497
                       ++  + +  KR      +M    I  + +S+  L+KAL          
Sbjct: 128 ------------DILVEENHVKRAIGFYKEMREKGIPPTVVSLNILIKAL---------- 165

Query: 498 QYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSII 557
              C ++                E  ES  A  +F++M   G  P++ TY  +I+    +
Sbjct: 166 ---CKNE----------------ETVES--AFRLFREMPNRGCQPDSYTYGTLINGLCKL 204

Query: 558 RCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLY 617
                A  L+  M   G  P  ++YT+LI  L    + DEA+ LL+ + + GI  +V  Y
Sbjct: 205 GKISQAKELLDEMEEKGLSPSVVSYTSLIHGLCQSNNLDEAIELLEEMIINGIEPNVFTY 264

Query: 618 NTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSM 677
           ++++   C+ G       ++E M + ++ P+  T   + +G    G H  A+E L  + +
Sbjct: 265 SSLMDGLCKSGHSSQAMELLEVMVRRRLLPNMVTYSTLINGLCKEGKHREAVEILDRMRL 324

Query: 678 RML 680
           + L
Sbjct: 325 QGL 327



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 76/356 (21%), Positives = 147/356 (41%), Gaps = 19/356 (5%)

Query: 321 SLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELD 380
           S G +   +T+   I  +VS    R    +L+ M+Q + +  +    T+     +     
Sbjct: 43  SNGFRHDHNTFGAMIHRLVSVNQFRPAEGMLERMKQEDCEVTEDVFLTICRGYGRVHRPL 102

Query: 381 LAEALLDQISRCTNPKPFSAFLAACDTM---DKPERAIKIFAKMRQK-LRPDIRTYELLF 436
            A  +  ++          ++L   D +   +  +RAI  + +MR+K + P + +  +L 
Sbjct: 103 DAIRVFHKMEDFQVKPTQKSYLTVFDILVEENHVKRAIGFYKEMREKGIPPTVVSLNILI 162

Query: 437 SLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIREL 496
                     EE      V+SA R+     +       +++ ++ N L  LG     +EL
Sbjct: 163 KAL----CKNEE-----TVESAFRLFREMPNRGCQPDSYTYGTLINGLCKLGKISQAKEL 213

Query: 497 IQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSI 556
           +    +        +Y +++H L ++     A+E+ ++M   GI PN  TY+ ++D    
Sbjct: 214 LDEMEEKGLSPSVVSYTSLIHGLCQSNNLDEAIELLEEMIINGIEPNVFTYSSLMDGLCK 273

Query: 557 IRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLL 616
                 A  L+ +MVR    P  +TY+ LI  L   G   EA+ +LD + L+G+  D  +
Sbjct: 274 SGHSSQAMELLEVMVRRRLLPNMVTYSTLINGLCKEGKHREAVEILDRMRLQGLKPDAGM 333

Query: 617 YNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEAL 672
           Y  I+   C           I++M    + P+ ++  F      +   HN  ++ L
Sbjct: 334 YGRIISGLCAACNYQEAANFIDEMALGGISPNRASWTF------HVKMHNMVVQGL 383



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 73/381 (19%), Positives = 158/381 (41%), Gaps = 34/381 (8%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           F  +    GR      A ++  +M+   ++P+  +Y      +V +  ++  +   K M+
Sbjct: 88  FLTICRGYGRVHRPLDAIRVFHKMEDFQVKPTQKSYLTVFDILVEENHVKRAIGFYKEMR 147

Query: 356 QNNLKPQDSTIATLSVE----CSKALELDLAEALLDQI-SRCTNPKPFS--AFLAACDTM 408
           +  + P   T+ +L++     C     ++ A  L  ++ +R   P  ++    +     +
Sbjct: 148 EKGIPP---TVVSLNILIKALCKNEETVESAFRLFREMPNRGCQPDSYTYGTLINGLCKL 204

Query: 409 DKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMD 467
            K  +A ++  +M +K L P + +Y  L       N           +D A  I  +E +
Sbjct: 205 GKISQAKELLDEMEEKGLSPSVVSYTSLIHGLCQSN----------NLDEA--IELLE-E 251

Query: 468 MARNNIQHSHISMKNLLKAL---GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQE 524
           M  N I+ +  +  +L+  L   G      EL++     +      TY+T+++ L +  +
Sbjct: 252 MIINGIEPNVFTYSSLMDGLCKSGHSSQAMELLEVMVRRRLLPNMVTYSTLINGLCKEGK 311

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
              A+EI  +M+  G+ P+A  Y  +I        ++ A+  +  M   G  P   ++T 
Sbjct: 312 HREAVEILDRMRLQGLKPDAGMYGRIISGLCAACNYQEAANFIDEMALGGISPNRASWTF 371

Query: 585 LIKI-------LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFII 637
            +K+       L +  D   A  L   +   GI  ++  ++ ++K  C++G ++    I+
Sbjct: 372 HVKMHNMVVQGLCNNVDPTRAFQLYLSMRTRGISVEIGTFDCLVKCFCKRGDLNKAARIL 431

Query: 638 EQMHQNKVQPDPSTCHFVFSG 658
           E+M  +   PD    + +  G
Sbjct: 432 EEMILDGCIPDEGMWNVLMCG 452



 Score = 52.8 bits (125), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 63/348 (18%), Positives = 146/348 (41%), Gaps = 31/348 (8%)

Query: 318 QMQSLGLQPSSHTYDGFIRAIV-SDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKA 376
           +M+  G+ P+  + +  I+A+  ++  + +   + + M     +P   T  TL     K 
Sbjct: 145 EMREKGIPPTVVSLNILIKALCKNEETVESAFRLFREMPNRGCQPDSYTYGTLINGLCKL 204

Query: 377 LELDLAEALLDQIS-RCTNPK--PFSAFLAACDTMDKPERAIKIFAKMR-QKLRPDIRTY 432
            ++  A+ LLD++  +  +P    +++ +      +  + AI++  +M    + P++ TY
Sbjct: 205 GKISQAKELLDEMEEKGLSPSVVSYTSLIHGLCQSNNLDEAIELLEEMIINGIEPNVFTY 264

Query: 433 ELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGM 492
             L               +     S++ +  +E+ M R  +  + ++   L+  L  EG 
Sbjct: 265 SSLMD------------GLCKSGHSSQAMELLEV-MVRRRLLPNMVTYSTLINGLCKEGK 311

Query: 493 IRELIQYFCDSKTPLGTPT---YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNI 549
            RE ++     +     P    Y  ++  L  A     A     +M   GI PN A++  
Sbjct: 312 HREAVEILDRMRLQGLKPDAGMYGRIISGLCAACNYQEAANFIDEMALGGISPNRASWTF 371

Query: 550 MID--------CCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNL 601
            +          C+ +   ++    +SM  R G   +  T+  L+K     GD ++A  +
Sbjct: 372 HVKMHNMVVQGLCNNVDPTRAFQLYLSMRTR-GISVEIGTFDCLVKCFCKRGDLNKAARI 430

Query: 602 LDLVSLEGIPHDVLLYNTILKKACEKGRI-DVIEFIIEQMHQNKVQPD 648
           L+ + L+G   D  ++N ++    ++ ++ +  E ++ ++ Q  V+ +
Sbjct: 431 LEEMILDGCIPDEGMWNVLMCGLWDRKKVRETTELLVAELKQKFVEAE 478


>gi|242061542|ref|XP_002452060.1| hypothetical protein SORBIDRAFT_04g017840 [Sorghum bicolor]
 gi|241931891|gb|EES05036.1| hypothetical protein SORBIDRAFT_04g017840 [Sorghum bicolor]
          Length = 674

 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 90/377 (23%), Positives = 166/377 (44%), Gaps = 52/377 (13%)

Query: 304 GRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQD 363
           G  ++  L + L L + S+ + P ++TY+  ++ +   +      E+++ M +NN  P +
Sbjct: 196 GYCRSGRLTDALRL-IASMPVAPDTYTYNTVLKGLCFAKQWEEAEELMREMIRNNCHPNE 254

Query: 364 STIAT-LSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMR 422
            T AT +   C   L LD A  LL+Q+     PK                     +  M 
Sbjct: 255 VTFATQIRAFCQNGL-LDRAVELLEQM-----PK---------------------YGCM- 286

Query: 423 QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKN 482
               PD+  Y  L      VN   E G    +VD A ++  +   + R N    + ++K 
Sbjct: 287 ----PDVVIYSTL------VNGFSEHG----RVDDALKL--LSTMLCRPNTVCYNAALKG 330

Query: 483 LLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPP 542
           L  A G    + ELI        P    T++T+++SL + + +  A+E+ +QM+  G  P
Sbjct: 331 LCIA-GRWDEVGELIAEMVRKDCPPNDATFSTLINSLCQNRLAEYAIEVLEQMQKYGYMP 389

Query: 543 NAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL 602
           +  +YN +I C S   C   A  L++ M+     P T+++ A++K L     + +A  L+
Sbjct: 390 DVVSYNTIISCFSEQACADDALKLLNSML---CKPDTISFNAVLKCLCRAERWYDAAELM 446

Query: 603 DLVSLEGIPHDVLLYNTILKKACEKGRI-DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVN 661
             +  E    + + +N ++   C+ G++ D IE + E M + +  PD  T   + +G+  
Sbjct: 447 AKMLKEDCHTNEMTFNILIDSLCQNGQVKDAIE-MFELMPKYRCTPDIVTYSSLINGFSE 505

Query: 662 CGFHNSAMEALQVLSMR 678
            G    A +  + +  R
Sbjct: 506 QGLDKVAFDLFRSMPCR 522



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 110/480 (22%), Positives = 188/480 (39%), Gaps = 31/480 (6%)

Query: 181 LDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK---HYSLSIFSLRKFVWSF 237
           L L+ S  V  +  TY  +LK   + K      E+  + I+   H +   F+ +  + +F
Sbjct: 207 LRLIASMPVAPDTYTYNTVLKGLCFAKQWEEAEELMREMIRNNCHPNEVTFATQ--IRAF 264

Query: 238 TRLRDLKSAYETLQHMVALAMMGKLYINRT-SEGRLRSSRLDIPIPLNALPVMKVLRWSF 296
            +   L  A E L+ M     M  + I  T   G     R+D  + L +  + +     +
Sbjct: 265 CQNGLLDRAVELLEQMPKYGCMPDVVIYSTLVNGFSEHGRVDDALKLLSTMLCRPNTVCY 324

Query: 297 SDVIHA---CGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           +  +      GR    G   +L+ +M      P+  T+   I ++  +R     +EVL+ 
Sbjct: 325 NAALKGLCIAGRWDEVG---ELIAEMVRKDCPPNDATFSTLINSLCQNRLAEYAIEVLEQ 381

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPER 413
           MQ+    P   +  T+    S+    D A  LL+ +    +   F+A L      ++   
Sbjct: 382 MQKYGYMPDVVSYNTIISCFSEQACADDALKLLNSMLCKPDTISFNAVLKCLCRAERWYD 441

Query: 414 AIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMD--MARN 471
           A ++ AKM   L+ D  T E+ F++            + S   + +  +AIEM   M + 
Sbjct: 442 AAELMAKM---LKEDCHTNEMTFNIL-----------IDSLCQNGQVKDAIEMFELMPKY 487

Query: 472 NIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEI 531
                 ++  +L+     +G+ +     F          +YN  L  L  A     A E+
Sbjct: 488 RCTPDIVTYSSLINGFSEQGLDKVAFDLFRSMPCRADIFSYNATLKGLCMAARWDDAGEL 547

Query: 532 FKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLD 591
              M T    PN  T+NI+I+          A  +   M + G  P   TY ALI    +
Sbjct: 548 IADMVTKDCLPNEVTFNILINSLCQKGLVNRAIEVYEQMPKYGITPDIFTYNALINGYSE 607

Query: 592 YGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
            G  D+AL  L  +  E    D + YN+ILK  C   R    E ++ +M +    P+  T
Sbjct: 608 QGCLDDALKFLSTMPCE---PDTISYNSILKGLCRAERWKDAEKLVTEMLRKNCTPNEVT 664



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 108/519 (20%), Positives = 199/519 (38%), Gaps = 54/519 (10%)

Query: 194 VTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHM 253
           +T   L+K    ++ L+    + E      +    S    V  + R   L  A   L+  
Sbjct: 120 ITCNILIKKLCARRRLADAERVLEALKTSGAADAVSHNTLVAGYCRDGSLWDAERVLEAA 179

Query: 254 VALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAE 313
            A      +      +G  RS RL   + L A   +    ++++ V+      +    AE
Sbjct: 180 RASGAANVVTYTALIDGYCRSGRLTDALRLIASMPVAPDTYTYNTVLKGLCFAKQWEEAE 239

Query: 314 QLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVEC 373
           +LM +M      P+  T+   IRA   +  L   +E+L+ M +    P     +TL    
Sbjct: 240 ELMREMIRNNCHPNEVTFATQIRAFCQNGLLDRAVELLEQMPKYGCMPDVVIYSTLVNGF 299

Query: 374 SKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTY 432
           S+   +D A  LL  +    N   ++A L       + +   ++ A+M R+   P+  T+
Sbjct: 300 SEHGRVDDALKLLSTMLCRPNTVCYNAALKGLCIAGRWDEVGELIAEMVRKDCPPNDATF 359

Query: 433 ELLF-SLFGNVNAPYEEGNMFSQVDSAKRINAIEM--DMARNNIQHSHISMKNLLKALGA 489
             L  SL  N  A Y                AIE+   M +       +S   ++     
Sbjct: 360 STLINSLCQNRLAEY----------------AIEVLEQMQKYGYMPDVVSYNTIISCFSE 403

Query: 490 EGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNI 549
           +    + ++          T ++N VL  L  A+  + A E+  +M       N  T+NI
Sbjct: 404 QACADDALKLLNSMLCKPDTISFNAVLKCLCRAERWYDAAELMAKMLKEDCHTNEMTFNI 463

Query: 550 MIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI---------KILLDY-------- 592
           +ID        K A  +  +M +    P  +TY++LI         K+  D         
Sbjct: 464 LIDSLCQNGQVKDAIEMFELMPKYRCTPDIVTYSSLINGFSEQGLDKVAFDLFRSMPCRA 523

Query: 593 ---------------GDFDEALNLL-DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFI 636
                            +D+A  L+ D+V+ + +P++V  +N ++   C+KG ++    +
Sbjct: 524 DIFSYNATLKGLCMAARWDDAGELIADMVTKDCLPNEVT-FNILINSLCQKGLVNRAIEV 582

Query: 637 IEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
            EQM +  + PD  T + + +GY   G  + A++ L  +
Sbjct: 583 YEQMPKYGITPDIFTYNALINGYSEQGCLDDALKFLSTM 621



 Score = 47.4 bits (111), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 111/503 (22%), Positives = 194/503 (38%), Gaps = 72/503 (14%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILP---VYNSFLGACAKLHSMVHANLCL 181
           Y  ++   C+ G L +A  LI  +       P+ P    YN+ L           A   +
Sbjct: 190 YTALIDGYCRSGRLTDALRLIASM-------PVAPDTYTYNTVLKGLCFAKQWEEAEELM 242

Query: 182 DLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSL-SIFSLRKFVWSFTRL 240
             M       NEVT+   ++       L    E+ E   K+  +  +      V  F+  
Sbjct: 243 REMIRNNCHPNEVTFATQIRAFCQNGLLDRAVELLEQMPKYGCMPDVVIYSTLVNGFSEH 302

Query: 241 RDLKSAYETLQHMVA--------LAMMGKLYINRTSE-GRLRSS--RLDIPIPLNALPVM 289
             +  A + L  M+          A+ G     R  E G L +   R D P P +A    
Sbjct: 303 GRVDDALKLLSTMLCRPNTVCYNAALKGLCIAGRWDEVGELIAEMVRKDCP-PNDA---- 357

Query: 290 KVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGME 349
                +FS +I++  + + +  A +++ QMQ  G  P   +Y+  I +  S++   +  +
Sbjct: 358 -----TFSTLINSLCQNRLAEYAIEVLEQMQKYGYMPDVVSYNTII-SCFSEQACAD--D 409

Query: 350 VLKIMQQNNLKPQDSTI-ATLSVECSKALELDLAEALLDQISR-C-TNPKPFSAFLAACD 406
            LK++     KP   +  A L   C      D AE +   +   C TN   F+  + +  
Sbjct: 410 ALKLLNSMLCKPDTISFNAVLKCLCRAERWYDAAELMAKMLKEDCHTNEMTFNILIDSLC 469

Query: 407 TMDKPERAIKIFAKM-RQKLRPDIRTYELL-------------FSLFGNV---------N 443
              + + AI++F  M + +  PDI TY  L             F LF ++         N
Sbjct: 470 QNGQVKDAIEMFELMPKYRCTPDIVTYSSLINGFSEQGLDKVAFDLFRSMPCRADIFSYN 529

Query: 444 APYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDS 503
           A  +   M ++ D A  + A   DM   +   + ++   L+ +L  +G++   I+ +   
Sbjct: 530 ATLKGLCMAARWDDAGELIA---DMVTKDCLPNEVTFNILINSLCQKGLVNRAIEVYEQM 586

Query: 504 KTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYN-IMIDCCSIIRC 559
                TP   TYN +++   E      A++    M      P+  +YN I+   C   R 
Sbjct: 587 PKYGITPDIFTYNALINGYSEQGCLDDALKFLSTMPC---EPDTISYNSILKGLCRAER- 642

Query: 560 FKSASALVSMMVRDGFYPQTMTY 582
           +K A  LV+ M+R    P  +T+
Sbjct: 643 WKDAEKLVTEMLRKNCTPNEVTF 665



 Score = 40.8 bits (94), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 80/175 (45%), Gaps = 16/175 (9%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC-CSIIRCFKSASALVSM 569
           ++NT++           A  + +  +  G   N  TY  +ID  C   R   +   + SM
Sbjct: 155 SHNTLVAGYCRDGSLWDAERVLEAARASGAA-NVVTYTALIDGYCRSGRLTDALRLIASM 213

Query: 570 MVRDGFYPQTMTYTALIKILLDYGDFDEALNLL-DLVSLEGIPHDVLLYNTILKKACEKG 628
            V     P T TY  ++K L     ++EA  L+ +++     P++V  + T ++  C+ G
Sbjct: 214 PVA----PDTYTYNTVLKGLCFAKQWEEAEELMREMIRNNCHPNEV-TFATQIRAFCQNG 268

Query: 629 RIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGF--HNSAMEALQVLSMRMLC 681
            +D    ++EQM +    PD      ++S  VN GF  H    +AL++LS  MLC
Sbjct: 269 LLDRAVELLEQMPKYGCMPD----VVIYSTLVN-GFSEHGRVDDALKLLST-MLC 317


>gi|225441858|ref|XP_002278530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Vitis vinifera]
          Length = 798

 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 86/174 (49%)

Query: 502 DSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFK 561
           +S   +  PT++ ++ +  ++  + +A+E F +MK  G  P+  TYN ++        F 
Sbjct: 124 NSNIQIPPPTFSVLIAAYAKSGMAEKAVESFGKMKDFGCKPDVFTYNSILHVMVQKEVFL 183

Query: 562 SASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTIL 621
            A A+ + M++  + P   T+  L+  L   G  D+AL + D ++ +GIP + ++Y  IL
Sbjct: 184 LALAVYNQMLKLNYNPNRATFVILLNGLCKNGKTDDALKMFDEMTQKGIPPNTMIYTIIL 243

Query: 622 KKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
              C+  R D +  ++  M  +   PD  TC+ +  G+   G  + A   LQ+ 
Sbjct: 244 SGLCQAKRTDDVHRLLNTMKVSGCCPDSITCNALLDGFCKLGQIDEAFALLQLF 297



 Score = 80.1 bits (196), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 65/279 (23%), Positives = 115/279 (41%), Gaps = 19/279 (6%)

Query: 395 PKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFS 453
           P  FS  +AA       E+A++ F KM+    +PD+ TY  +              ++  
Sbjct: 131 PPTFSVLIAAYAKSGMAEKAVESFGKMKDFGCKPDVFTYNSIL-------------HVMV 177

Query: 454 QVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP--- 510
           Q +      A+   M + N   +  +   LL  L   G   + ++ F D  T  G P   
Sbjct: 178 QKEVFLLALAVYNQMLKLNYNPNRATFVILLNGLCKNGKTDDALKMF-DEMTQKGIPPNT 236

Query: 511 -TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSM 569
             Y  +L  L +A+ +     +   MK  G  P++ T N ++D    +     A AL+ +
Sbjct: 237 MIYTIILSGLCQAKRTDDVHRLLNTMKVSGCCPDSITCNALLDGFCKLGQIDEAFALLQL 296

Query: 570 MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
             ++G+      Y++LI  L     +DE       +   GI  DV+LY  +++  CE G 
Sbjct: 297 FEKEGYVLGIKGYSSLIDGLFRAKRYDEVQEWCRKMFKAGIEPDVVLYTILIRGFCEVGM 356

Query: 630 IDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSA 668
           +D    ++  M Q  + PD    + +  G+ + G  + A
Sbjct: 357 VDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVGLLDKA 395



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 102/460 (22%), Positives = 169/460 (36%), Gaps = 74/460 (16%)

Query: 214 EIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGK-----LYINRTS 268
           EI  D ++         R F+W+ TR R  +S    + H + + M+ K      Y     
Sbjct: 65  EIVNDVMREQRRPELGFRFFIWT-TRRRSFRS---WVTHNLVIDMLAKDDGFDTYWKILE 120

Query: 269 EGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSS 328
           E  L++S + IP P            +FS +I A  ++  +  A +   +M+  G +P  
Sbjct: 121 E--LKNSNIQIPPP------------TFSVLIAAYAKSGMAEKAVESFGKMKDFGCKPDV 166

Query: 329 HTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ 388
            TY+  +  +V        + V   M + N  P  +T   L                L+ 
Sbjct: 167 FTYNSILHVMVQKEVFLLALAVYNQMLKLNYNPNRATFVIL----------------LNG 210

Query: 389 ISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYE 447
           +  C N               K + A+K+F +M QK + P+   Y ++ S          
Sbjct: 211 L--CKN--------------GKTDDALKMFDEMTQKGIPPNTMIYTIILS---------- 244

Query: 448 EGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSK 504
                 Q      ++ +   M  +      I+   LL      G I E   L+Q F    
Sbjct: 245 ---GLCQAKRTDDVHRLLNTMKVSGCCPDSITCNALLDGFCKLGQIDEAFALLQLFEKEG 301

Query: 505 TPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSAS 564
             LG   Y++++  L  A+      E  ++M   GI P+   Y I+I     +     A 
Sbjct: 302 YVLGIKGYSSLIDGLFRAKRYDEVQEWCRKMFKAGIEPDVVLYTILIRGFCEVGMVDYAL 361

Query: 565 ALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNL-LDLVSLEGIPHDVLLYNTILKK 623
            +++ M + G  P T  Y ALIK   D G  D+A +L L++   +  P     Y  ++  
Sbjct: 362 NMLNDMTQRGLSPDTYCYNALIKGFCDVGLLDKARSLQLEISKNDCFPTSC-TYTILICG 420

Query: 624 ACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
            C  G +D    I  QM      P   T + +  G    G
Sbjct: 421 MCRNGLLDEARQIFNQMENLGCSPSIMTFNALIDGLCKAG 460



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 66/297 (22%), Positives = 119/297 (40%), Gaps = 42/297 (14%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI-MQQNNLKPQDSTIATLS 370
           A  ++  M   GL P ++ Y+  I+    D GL +    L++ + +N+  P   T   L 
Sbjct: 360 ALNMLNDMTQRGLSPDTYCYNALIKGFC-DVGLLDKARSLQLEISKNDCFPTSCTYTILI 418

Query: 371 VECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKP---ERAIKIFAKMRQKLRP 427
               +   LD A  + +Q+           F A  D + K    E A  +F KM     P
Sbjct: 419 CGMCRNGLLDEARQIFNQMENLGCSPSIMTFNALIDGLCKAGELEEARHLFYKMEIGKNP 478

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL 487
                    SLF  ++              A R+    MD A         S++ +++ L
Sbjct: 479 ---------SLFLRLS------------QGADRV----MDTA---------SLQTMVERL 504

Query: 488 GAEGMI---RELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNA 544
              G+I    +L+    DS       TYN +++   +A+  + A ++F++++  G  P++
Sbjct: 505 CESGLILKAYKLLMQLADSGVVPDIMTYNVLINGFCKAKNINGAFKLFRELQLKGHSPDS 564

Query: 545 ATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNL 601
            TY  +ID    +   + A  ++  MV++G  P +  Y  L+      G    A +L
Sbjct: 565 VTYGTLIDGFHRVDREEDAFRVLDQMVKNGCTPSSAVYKCLMTWSCRKGKLSVAFSL 621



 Score = 47.4 bits (111), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 29/126 (23%), Positives = 57/126 (45%)

Query: 507 LGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASAL 566
           + T +  T++  L E+    +A ++  Q+   G+ P+  TYN++I+     +    A  L
Sbjct: 492 MDTASLQTMVERLCESGLILKAYKLLMQLADSGVVPDIMTYNVLINGFCKAKNINGAFKL 551

Query: 567 VSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE 626
              +   G  P ++TY  LI         ++A  +LD +   G      +Y  ++  +C 
Sbjct: 552 FRELQLKGHSPDSVTYGTLIDGFHRVDREEDAFRVLDQMVKNGCTPSSAVYKCLMTWSCR 611

Query: 627 KGRIDV 632
           KG++ V
Sbjct: 612 KGKLSV 617


>gi|357141282|ref|XP_003572167.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Brachypodium distachyon]
          Length = 686

 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 106/552 (19%), Positives = 209/552 (37%), Gaps = 51/552 (9%)

Query: 129 MQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRM 188
           +QA    G L+EA  ++  +G      P    YN  +    K  +   A    D M  + 
Sbjct: 159 VQACVVAGDLDEAVGMLRRMGCDGAPAPNAFSYNVVIAGLWKAGTDCDAVKLFDEMPEKA 218

Query: 189 VGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYE 248
           V  N +TY  ++   + + +L +   +W   ++H       L+  V ++  L        
Sbjct: 219 VVPNHITYNTMIDGHIKKGDLESGFRLWSQMLRH------GLKPNVITYNVL-------- 264

Query: 249 TLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQN 308
               +  L   G++         + S ++   +P           +++S +     RT +
Sbjct: 265 ----LSGLCRAGRMGETAAVLDEMASRKM---VPDG---------FTYSILFDGHSRTGD 308

Query: 309 SGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIAT 368
           S     L  +    G++  ++T    +  +  D  +    EVL+ +  + L        T
Sbjct: 309 SQTMLSLFEESVKKGVKIGAYTCSILLNGLCKDGKISKAEEVLQTLVNSGLLQTTVIYNT 368

Query: 369 LSVECSKALELDLAEALLDQI-SRCTNPK--PFSAFLAACDTMDKPERAIKIFAKM-RQK 424
           L     +  +L+ A ++  Q+ SR   P    ++A +     +++   A  +  +M +  
Sbjct: 369 LINGYCQIGDLEGAFSIFQQMKSRLIRPDHITYNALINGLGKVERITEAHDLVIEMEKNG 428

Query: 425 LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLL 484
           + P + T+  L   +G             +    ++   I  DM    ++ + +S  +++
Sbjct: 429 VNPSVETFNTLIDAYG-------------RAGQLEKCFIILSDMQEKGLKPNVVSYGSIV 475

Query: 485 KALGAEGMIRELIQYFCD---SKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIP 541
            A    G I E +    D        G   YN ++ + +E   + +A  + ++MK+ G+P
Sbjct: 476 NAFCKNGKILEAVAILDDMFIKDVLPGAQVYNAIIDAYIECGSTDQAFMLAEKMKSSGVP 535

Query: 542 PNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNL 601
           P+  TYN++I           A  L+  +   G  P  ++Y  LI       + D AL L
Sbjct: 536 PSIVTYNLLIKGLCKQSQISEAEELLDSLRNYGLAPDVISYNTLISACCYRSNTDRALEL 595

Query: 602 LDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVN 661
              +   GI      Y  +       GR+  +E + +QM    V P     + +   Y  
Sbjct: 596 EKEMWKCGIKPSPRTYRMLFSSLGGAGRVHEMENLYQQMLDKDVVPCSGIYNIMVDAYAK 655

Query: 662 CGFHNSAMEALQ 673
           CG   S +EAL+
Sbjct: 656 CG-EESKVEALR 666



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 79/187 (42%), Gaps = 3/187 (1%)

Query: 489 AEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYN 548
           A GM+R +    CD        +YN V+  L +A     A+++F +M    + PN  TYN
Sbjct: 171 AVGMLRRM---GCDGAPAPNAFSYNVVIAGLWKAGTDCDAVKLFDEMPEKAVVPNHITYN 227

Query: 549 IMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLE 608
            MID        +S   L S M+R G  P  +TY  L+  L   G   E   +LD ++  
Sbjct: 228 TMIDGHIKKGDLESGFRLWSQMLRHGLKPNVITYNVLLSGLCRAGRMGETAAVLDEMASR 287

Query: 609 GIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSA 668
            +  D   Y+ +       G    +  + E+  +  V+    TC  + +G    G  + A
Sbjct: 288 KMVPDGFTYSILFDGHSRTGDSQTMLSLFEESVKKGVKIGAYTCSILLNGLCKDGKISKA 347

Query: 669 MEALQVL 675
            E LQ L
Sbjct: 348 EEVLQTL 354



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 94/448 (20%), Positives = 176/448 (39%), Gaps = 57/448 (12%)

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
           M EK +  N+  Y  M+    K G LE    L   +  R+G+ P +  YN  L    +  
Sbjct: 214 MPEKAVVPNHITYNTMIDGHIKKGDLESGFRLWSQM-LRHGLKPNVITYNVLLSGLCRAG 272

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH-YSLSIFSLR 231
            M      LD M SR +  +  TY+ L        +   +  ++E+ +K    +  ++  
Sbjct: 273 RMGETAAVLDEMASRKMVPDGFTYSILFDGHSRTGDSQTMLSLFEESVKKGVKIGAYTCS 332

Query: 232 KFVWSFTRLRDLKSAYETLQHMVALAMMGKLYI-NRTSEGRLRSSRLDIPIPLNALPVMK 290
             +    +   +  A E LQ +V   ++    I N    G  +   L+    +      +
Sbjct: 333 ILLNGLCKDGKISKAEEVLQTLVNSGLLQTTVIYNTLINGYCQIGDLEGAFSIFQQMKSR 392

Query: 291 VLR---WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNG 347
           ++R    +++ +I+  G+ +    A  L+++M+  G+ PS  T++  I A      L   
Sbjct: 393 LIRPDHITYNALINGLGKVERITEAHDLVIEMEKNGVNPSVETFNTLIDAYGRAGQLEKC 452

Query: 348 MEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI---SRCTNPKPFSAFLAA 404
             +L  MQ+  LKP   +  ++     K  ++  A A+LD +         + ++A + A
Sbjct: 453 FIILSDMQEKGLKPNVVSYGSIVNAFCKNGKILEAVAILDDMFIKDVLPGAQVYNAIIDA 512

Query: 405 CDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINA 463
                  ++A  +  KM+   + P I TY LL                            
Sbjct: 513 YIECGSTDQAFMLAEKMKSSGVPPSIVTYNLLI--------------------------- 545

Query: 464 IEMDMARNNIQHSHIS-MKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEA 522
                 +   + S IS  + LL +L   G+  ++I             +YNT++ +    
Sbjct: 546 ------KGLCKQSQISEAEELLDSLRNYGLAPDVI-------------SYNTLISACCYR 586

Query: 523 QESHRAMEIFKQMKTCGIPPNAATYNIM 550
             + RA+E+ K+M  CGI P+  TY ++
Sbjct: 587 SNTDRALELEKEMWKCGIKPSPRTYRML 614



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 75/177 (42%), Gaps = 1/177 (0%)

Query: 488 GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIP-PNAAT 546
           G    +R   +    ++    T T+N  + + V A +   A+ + ++M   G P PNA +
Sbjct: 131 GRHADVRGAFELLVAARARPDTFTWNKAVQACVVAGDLDEAVGMLRRMGCDGAPAPNAFS 190

Query: 547 YNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVS 606
           YN++I           A  L   M      P  +TY  +I   +  GD +    L   + 
Sbjct: 191 YNVVIAGLWKAGTDCDAVKLFDEMPEKAVVPNHITYNTMIDGHIKKGDLESGFRLWSQML 250

Query: 607 LEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
             G+  +V+ YN +L   C  GR+     ++++M   K+ PD  T   +F G+   G
Sbjct: 251 RHGLKPNVITYNVLLSGLCRAGRMGETAAVLDEMASRKMVPDGFTYSILFDGHSRTG 307



 Score = 41.2 bits (95), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 30/143 (20%), Positives = 62/143 (43%), Gaps = 1/143 (0%)

Query: 542 PNAATYNIMIDCCSIIRCFKSASALVSMMVRDGF-YPQTMTYTALIKILLDYGDFDEALN 600
           P+  T+N  +  C +      A  ++  M  DG   P   +Y  +I  L   G   +A+ 
Sbjct: 150 PDTFTWNKAVQACVVAGDLDEAVGMLRRMGCDGAPAPNAFSYNVVIAGLWKAGTDCDAVK 209

Query: 601 LLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYV 660
           L D +  + +  + + YNT++    +KG ++    +  QM ++ ++P+  T + + SG  
Sbjct: 210 LFDEMPEKAVVPNHITYNTMIDGHIKKGDLESGFRLWSQMLRHGLKPNVITYNVLLSGLC 269

Query: 661 NCGFHNSAMEALQVLSMRMLCEE 683
             G        L  ++ R +  +
Sbjct: 270 RAGRMGETAAVLDEMASRKMVPD 292


>gi|297739643|emb|CBI29825.3| unnamed protein product [Vitis vinifera]
          Length = 722

 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 86/174 (49%)

Query: 502 DSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFK 561
           +S   +  PT++ ++ +  ++  + +A+E F +MK  G  P+  TYN ++        F 
Sbjct: 124 NSNIQIPPPTFSVLIAAYAKSGMAEKAVESFGKMKDFGCKPDVFTYNSILHVMVQKEVFL 183

Query: 562 SASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTIL 621
            A A+ + M++  + P   T+  L+  L   G  D+AL + D ++ +GIP + ++Y  IL
Sbjct: 184 LALAVYNQMLKLNYNPNRATFVILLNGLCKNGKTDDALKMFDEMTQKGIPPNTMIYTIIL 243

Query: 622 KKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
              C+  R D +  ++  M  +   PD  TC+ +  G+   G  + A   LQ+ 
Sbjct: 244 SGLCQAKRTDDVHRLLNTMKVSGCCPDSITCNALLDGFCKLGQIDEAFALLQLF 297



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 65/279 (23%), Positives = 115/279 (41%), Gaps = 19/279 (6%)

Query: 395 PKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFS 453
           P  FS  +AA       E+A++ F KM+    +PD+ TY  +              ++  
Sbjct: 131 PPTFSVLIAAYAKSGMAEKAVESFGKMKDFGCKPDVFTYNSIL-------------HVMV 177

Query: 454 QVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP--- 510
           Q +      A+   M + N   +  +   LL  L   G   + ++ F D  T  G P   
Sbjct: 178 QKEVFLLALAVYNQMLKLNYNPNRATFVILLNGLCKNGKTDDALKMF-DEMTQKGIPPNT 236

Query: 511 -TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSM 569
             Y  +L  L +A+ +     +   MK  G  P++ T N ++D    +     A AL+ +
Sbjct: 237 MIYTIILSGLCQAKRTDDVHRLLNTMKVSGCCPDSITCNALLDGFCKLGQIDEAFALLQL 296

Query: 570 MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
             ++G+      Y++LI  L     +DE       +   GI  DV+LY  +++  CE G 
Sbjct: 297 FEKEGYVLGIKGYSSLIDGLFRAKRYDEVQEWCRKMFKAGIEPDVVLYTILIRGFCEVGM 356

Query: 630 IDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSA 668
           +D    ++  M Q  + PD    + +  G+ + G  + A
Sbjct: 357 VDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVGLLDKA 395



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 102/460 (22%), Positives = 169/460 (36%), Gaps = 74/460 (16%)

Query: 214 EIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGK-----LYINRTS 268
           EI  D ++         R F+W+ TR R  +S    + H + + M+ K      Y     
Sbjct: 65  EIVNDVMREQRRPELGFRFFIWT-TRRRSFRS---WVTHNLVIDMLAKDDGFDTYWKILE 120

Query: 269 EGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSS 328
           E  L++S + IP P            +FS +I A  ++  +  A +   +M+  G +P  
Sbjct: 121 E--LKNSNIQIPPP------------TFSVLIAAYAKSGMAEKAVESFGKMKDFGCKPDV 166

Query: 329 HTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ 388
            TY+  +  +V        + V   M + N  P  +T   L                L+ 
Sbjct: 167 FTYNSILHVMVQKEVFLLALAVYNQMLKLNYNPNRATFVIL----------------LNG 210

Query: 389 ISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYE 447
           +  C N               K + A+K+F +M QK + P+   Y ++ S          
Sbjct: 211 L--CKN--------------GKTDDALKMFDEMTQKGIPPNTMIYTIILS---------- 244

Query: 448 EGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSK 504
                 Q      ++ +   M  +      I+   LL      G I E   L+Q F    
Sbjct: 245 ---GLCQAKRTDDVHRLLNTMKVSGCCPDSITCNALLDGFCKLGQIDEAFALLQLFEKEG 301

Query: 505 TPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSAS 564
             LG   Y++++  L  A+      E  ++M   GI P+   Y I+I     +     A 
Sbjct: 302 YVLGIKGYSSLIDGLFRAKRYDEVQEWCRKMFKAGIEPDVVLYTILIRGFCEVGMVDYAL 361

Query: 565 ALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNL-LDLVSLEGIPHDVLLYNTILKK 623
            +++ M + G  P T  Y ALIK   D G  D+A +L L++   +  P     Y  ++  
Sbjct: 362 NMLNDMTQRGLSPDTYCYNALIKGFCDVGLLDKARSLQLEISKNDCFPTSC-TYTILICG 420

Query: 624 ACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
            C  G +D    I  QM      P   T + +  G    G
Sbjct: 421 MCRNGLLDEARQIFNQMENLGCSPSIMTFNALIDGLCKAG 460


>gi|224063295|ref|XP_002301082.1| predicted protein [Populus trichocarpa]
 gi|222842808|gb|EEE80355.1| predicted protein [Populus trichocarpa]
          Length = 509

 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 83/374 (22%), Positives = 164/374 (43%), Gaps = 45/374 (12%)

Query: 325 QPSSHTYDGFIRAIVSDRGLRNGMEVLK-IMQQNNLKPQDSTIATLSVECSKALELDLAE 383
           +P   +++  +  I  +R  ++ +E+   +++Q       +T +T+  + ++A +    +
Sbjct: 44  KPKFISHETAVNLIKHERDPQHALEIFNLVVEQKGFNHNHATYSTIIDKLARAKKFQAVD 103

Query: 384 ALLDQISRCTNPKPFSAFLAACDTMDKP---ERAIKIFAKMRQKLRPDIRTYELLFSLFG 440
           ALL Q+   T     S FL       K    ER +++F     K++P +R    L ++  
Sbjct: 104 ALLRQMMYETCKFHESLFLNLMKYFAKSSEFERVVEMF----NKIQPIVREKPSLKAIST 159

Query: 441 NVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYF 500
            +N   E      QVD    +    +D+ ++++   +  + N+             I+Y 
Sbjct: 160 CLNLLVES----KQVD---LLRGFLLDLNKDHMLKPNTCIFNIF------------IKYH 200

Query: 501 CDS--------------KTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCG-IPP 542
           C S              K+ +  P   TY+T++  L E+     A+E+F++M +   I P
Sbjct: 201 CKSGDLESAFAVVKEMKKSSISYPNLITYSTLMDGLCESGRLKEAIELFEEMVSKDQILP 260

Query: 543 NAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL 602
           +A TYN++I+  S       A  ++  M  +G  P    Y+AL+      G  +EA++  
Sbjct: 261 DALTYNVLINGFSCWGKVDRAKKIMEFMKSNGCSPNVFNYSALMSGFCKEGRLEEAMDAF 320

Query: 603 DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNC 662
           + + + G+  D + Y  ++   C  GRID    ++E+M + K + D  T + +  G+   
Sbjct: 321 EEMKIFGLKQDTVGYTILINYFCRFGRIDEAMALLEEMKETKCKADIVTVNVLLRGFCGE 380

Query: 663 GFHNSAMEALQVLS 676
           G    A+  L  LS
Sbjct: 381 GRTEEALGMLNRLS 394



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 74/364 (20%), Positives = 152/364 (41%), Gaps = 18/364 (4%)

Query: 317 LQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKA 376
           L ++  G   +  TY   I  +   +  +    +L+ M     K  +S    L    +K+
Sbjct: 72  LVVEQKGFNHNHATYSTIIDKLARAKKFQAVDALLRQMMYETCKFHESLFLNLMKYFAKS 131

Query: 377 LELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPD--IRTYEL 434
            E +    + ++I      KP    ++ C  +    + + +       L  D  ++    
Sbjct: 132 SEFERVVEMFNKIQPIVREKPSLKAISTCLNLLVESKQVDLLRGFLLDLNKDHMLKPNTC 191

Query: 435 LFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSH-ISMKNLLKALGAEGMI 493
           +F++F  +    + G++ S         A+  +M +++I + + I+   L+  L   G +
Sbjct: 192 IFNIF--IKYHCKSGDLESAF-------AVVKEMKKSSISYPNLITYSTLMDGLCESGRL 242

Query: 494 RELIQYFCD--SKTPL--GTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYN- 548
           +E I+ F +  SK  +     TYN +++      +  RA +I + MK+ G  PN   Y+ 
Sbjct: 243 KEAIELFEEMVSKDQILPDALTYNVLINGFSCWGKVDRAKKIMEFMKSNGCSPNVFNYSA 302

Query: 549 IMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLE 608
           +M   C   R  ++  A   M +  G    T+ YT LI     +G  DEA+ LL+ +   
Sbjct: 303 LMSGFCKEGRLEEAMDAFEEMKIF-GLKQDTVGYTILINYFCRFGRIDEAMALLEEMKET 361

Query: 609 GIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSA 668
               D++  N +L+  C +GR +    ++ ++    +  + ++   V +     G  + A
Sbjct: 362 KCKADIVTVNVLLRGFCGEGRTEEALGMLNRLSSEGIYLNKASYRIVLNSLCQKGDLDKA 421

Query: 669 MEAL 672
           +E L
Sbjct: 422 LELL 425



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 71/334 (21%), Positives = 133/334 (39%), Gaps = 53/334 (15%)

Query: 350 VLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAAC 405
           +L + + + LKP             K+ +L+ A A++ ++ + +   P    +S  +   
Sbjct: 177 LLDLNKDHMLKPNTCIFNIFIKYHCKSGDLESAFAVVKEMKKSSISYPNLITYSTLMDGL 236

Query: 406 DTMDKPERAIKIFAKM--RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINA 463
               + + AI++F +M  + ++ PD  TY +L + F          + + +VD AK+I  
Sbjct: 237 CESGRLKEAIELFEEMVSKDQILPDALTYNVLINGF----------SCWGKVDRAKKIME 286

Query: 464 IEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQ 523
               M  N    +  +   L+     EG + E                            
Sbjct: 287 F---MKSNGCSPNVFNYSALMSGFCKEGRLEE---------------------------- 315

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
               AM+ F++MK  G+  +   Y I+I+          A AL+  M         +T  
Sbjct: 316 ----AMDAFEEMKIFGLKQDTVGYTILINYFCRFGRIDEAMALLEEMKETKCKADIVTVN 371

Query: 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID-VIEFIIEQMHQ 642
            L++     G  +EAL +L+ +S EGI  +   Y  +L   C+KG +D  +E +   + +
Sbjct: 372 VLLRGFCGEGRTEEALGMLNRLSSEGIYLNKASYRIVLNSLCQKGDLDKALELLGLTLSR 431

Query: 643 NKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
             V P  +T + +  G    G  + A+ AL  L+
Sbjct: 432 GFV-PHHATSNELLVGLCKAGMADDAVVALYGLA 464


>gi|449503889|ref|XP_004162218.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g16890, mitochondrial-like [Cucumis sativus]
          Length = 697

 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 115/513 (22%), Positives = 200/513 (38%), Gaps = 62/513 (12%)

Query: 153 GIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELL----KLAVWQKN 208
           G+ P   +YN+ + A  K +S+  A L    M S     +  TY  L+    +L V  + 
Sbjct: 224 GLNPTTRLYNAVMDALIKSNSLDLAYLKFQQMSSHNCVPDRFTYNILIHGVCRLGVVDEA 283

Query: 209 LSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRT- 267
           L  + ++       Y  ++F+    +  F   +    A++ LQ M    ++      R+ 
Sbjct: 284 LRLMKQMEG---LGYFPNVFTYTILIDGFFNAKRAGEAFKVLQTMKERNVVPNEATMRSL 340

Query: 268 SEGRLRSSRLD--IPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSL--G 323
             G  R    D    + L  +   + +     D I  C  + NS  +E +M  +++   G
Sbjct: 341 VHGVFRCIAPDKAFELLLEFVERKQGITQLVCDNILYC-LSNNSMASEAVMFLIKTGKEG 399

Query: 324 LQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAE 383
             PSS T++  +  ++    L+    V     Q+ +KP  ST  TL     KA ++++  
Sbjct: 400 YVPSSSTFNITLACVLKKLDLKVTCTVFDNCVQSGVKPGFSTYLTLIEALYKAGKMEIGN 459

Query: 384 ALLDQI---SRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLF 439
             +D++      +N   ++  +         +RA ++F  +  + + P+I TY  L   F
Sbjct: 460 RYMDRLINDGLISNIYSYNMVIDCLCKGKSMDRASEMFRDLHNRGISPNIVTYNTLIGGF 519

Query: 440 GNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQY 499
                    GNM    D A+                                   EL++ 
Sbjct: 520 ------CRNGNM----DKAQ-----------------------------------ELLEM 534

Query: 500 FCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRC 559
             +S+      T+N+++  L +A +   A   F +M    +PPN  TYNI+I     I  
Sbjct: 535 LLESRFRPDIFTFNSLIDGLCQAHKHENAFGCFTEMVEWDVPPNVITYNILICSFCAIGD 594

Query: 560 FKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNT 619
              ++ L+  M   G  P T ++ ALI+       F +A  L D +   GI  D   Y  
Sbjct: 595 VSRSTHLLRQMKLHGIQPDTFSFNALIQGYTGKNRFQKAEKLFDSMLRLGIQPDNYTYGA 654

Query: 620 ILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTC 652
           ++K  C+ GR D    I   M +N   PD  TC
Sbjct: 655 LIKSLCKSGRHDKAREIFLSMKENGCTPDSYTC 687



 Score = 70.9 bits (172), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 96/429 (22%), Positives = 162/429 (37%), Gaps = 59/429 (13%)

Query: 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
           R++++ +IH   R      A +LM QM+ LG  P+  TY   I    + +      +VL+
Sbjct: 264 RFTYNILIHGVCRLGVVDEALRLMKQMEGLGYFPNVFTYTILIDGFFNAKRAGEAFKVLQ 323

Query: 353 IMQQNNLKPQDSTIATL------SVECSKALEL---------DLAEALLDQISRC----- 392
            M++ N+ P ++T+ +L       +   KA EL          + + + D I  C     
Sbjct: 324 TMKERNVVPNEATMRSLVHGVFRCIAPDKAFELLLEFVERKQGITQLVCDNILYCLSNNS 383

Query: 393 ------------------TNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYE 433
                              +   F+  LA        +    +F    Q  ++P   TY 
Sbjct: 384 MASEAVMFLIKTGKEGYVPSSSTFNITLACVLKKLDLKVTCTVFDNCVQSGVKPGFSTYL 443

Query: 434 LLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEG-- 491
            L      + A Y+ G M         I    MD   N+   S+I   N++     +G  
Sbjct: 444 TL------IEALYKAGKM--------EIGNRYMDRLINDGLISNIYSYNMVIDCLCKGKS 489

Query: 492 MIR--ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNI 549
           M R  E+ +   +        TYNT++          +A E+ + +      P+  T+N 
Sbjct: 490 MDRASEMFRDLHNRGISPNIVTYNTLIGGFCRNGNMDKAQELLEMLLESRFRPDIFTFNS 549

Query: 550 MIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEG 609
           +ID        ++A    + MV     P  +TY  LI      GD   + +LL  + L G
Sbjct: 550 LIDGLCQAHKHENAFGCFTEMVEWDVPPNVITYNILICSFCAIGDVSRSTHLLRQMKLHG 609

Query: 610 IPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAM 669
           I  D   +N +++    K R    E + + M +  +QPD  T   +       G H+ A 
Sbjct: 610 IQPDTFSFNALIQGYTGKNRFQKAEKLFDSMLRLGIQPDNYTYGALIKSLCKSGRHDKAR 669

Query: 670 EALQVLSMR 678
           E    LSM+
Sbjct: 670 EIF--LSMK 676



 Score = 58.9 bits (141), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 69/372 (18%), Positives = 137/372 (36%), Gaps = 41/372 (11%)

Query: 304 GRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQD 363
           GR   +    ++  Q+  LGL P++  Y+  + A++    L       + M  +N  P  
Sbjct: 205 GRLGLANYCVEVFGQIGLLGLNPTTRLYNAVMDALIKSNSLDLAYLKFQQMSSHNCVPDR 264

Query: 364 STIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ 423
            T   L     +   +D A  L+ Q+                         +  F     
Sbjct: 265 FTYNILIHGVCRLGVVDEALRLMKQM-----------------------EGLGYF----- 296

Query: 424 KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNL 483
              P++ TY +L   F N       G  F  + + K  N +  +    ++ H       +
Sbjct: 297 ---PNVFTYTILIDGFFNAK---RAGEAFKVLQTMKERNVVPNEATMRSLVHG------V 344

Query: 484 LKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPN 543
            + +  +    EL+  F + K  +     + +L+ L     +  A+    +    G  P+
Sbjct: 345 FRCIAPDKAF-ELLLEFVERKQGITQLVCDNILYCLSNNSMASEAVMFLIKTGKEGYVPS 403

Query: 544 AATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLD 603
           ++T+NI + C       K    +    V+ G  P   TY  LI+ L   G  +     +D
Sbjct: 404 SSTFNITLACVLKKLDLKVTCTVFDNCVQSGVKPGFSTYLTLIEALYKAGKMEIGNRYMD 463

Query: 604 LVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
            +  +G+  ++  YN ++   C+   +D    +   +H   + P+  T + +  G+   G
Sbjct: 464 RLINDGLISNIYSYNMVIDCLCKGKSMDRASEMFRDLHNRGISPNIVTYNTLIGGFCRNG 523

Query: 664 FHNSAMEALQVL 675
             + A E L++L
Sbjct: 524 NMDKAQELLEML 535



 Score = 42.7 bits (99), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 53/267 (19%), Positives = 107/267 (40%), Gaps = 24/267 (8%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           ++  +I A  +     +  + M ++ + GL  + ++Y+  I  +   + +    E+ + +
Sbjct: 441 TYLTLIEALYKAGKMEIGNRYMDRLINDGLISNIYSYNMVIDCLCKGKSMDRASEMFRDL 500

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDK 410
               + P   T  TL     +   +D A+ LL+ +   +  +P    F++ +       K
Sbjct: 501 HNRGISPNIVTYNTLIGGFCRNGNMDKAQELLEMLLE-SRFRPDIFTFNSLIDGLCQAHK 559

Query: 411 PERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
            E A   F +M +  + P++ TY +L                F  +    R   +   M 
Sbjct: 560 HENAFGCFTEMVEWDVPPNVITYNILIC-------------SFCAIGDVSRSTHLLRQMK 606

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP----TYNTVLHSLVEAQES 525
            + IQ    S   L++    +   ++  + F DS   LG      TY  ++ SL ++   
Sbjct: 607 LHGIQPDTFSFNALIQGYTGKNRFQKAEKLF-DSMLRLGIQPDNYTYGALIKSLCKSGRH 665

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMID 552
            +A EIF  MK  G  P++ T ++  D
Sbjct: 666 DKAREIFLSMKENGCTPDSYTCSLFSD 692


>gi|449463537|ref|XP_004149490.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Cucumis sativus]
          Length = 786

 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 93/202 (46%), Gaps = 3/202 (1%)

Query: 478 ISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQ 534
           ++  +L+   G  G + E+   F + K     P   TYN +++   + ++  RA E F +
Sbjct: 325 VTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSE 384

Query: 535 MKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGD 594
           MK  G+ PN  TY+ +ID        + A  L   M R G  P   TYT+LI      G+
Sbjct: 385 MKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLIDANCKAGN 444

Query: 595 FDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHF 654
             EA  LL+ +   G+  +++ Y  +L   C+ GR+   E +   M ++ + P+      
Sbjct: 445 LTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTA 504

Query: 655 VFSGYVNCGFHNSAMEALQVLS 676
           +  GY+       AM+ L+ ++
Sbjct: 505 LVHGYIKAERMEDAMKILKQMT 526



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 75/383 (19%), Positives = 148/383 (38%), Gaps = 57/383 (14%)

Query: 299 VIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNN 358
           ++H   ++ N  L  +    M   G+ PS  TY+  I  +  +  L N   +   M++  
Sbjct: 260 LLHRLSKSGNGQLVRKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMG 319

Query: 359 LKPQDSTIATLSVECSKALELDLAEALLDQ---ISRCTNPKPFSAFLAACDTMDKPERAI 415
           L P   T  +L     K   L+   +L ++   +    +   ++  +      +K  RA 
Sbjct: 320 LSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAF 379

Query: 416 KIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQ 474
           + F++M+   L+P++ TY  L                                       
Sbjct: 380 EYFSEMKNNGLKPNVVTYSTL--------------------------------------- 400

Query: 475 HSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEI 531
                    + A   EGM++  I+ F D +     P   TY +++ +  +A     A ++
Sbjct: 401 ---------IDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKL 451

Query: 532 FKQMKTCGIPPNAATYNIMID-CCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590
              M   G+  N  TY  ++D  C   R  ++     SM+ +DG  P    YTAL+   +
Sbjct: 452 LNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSML-KDGISPNQQVYTALVHGYI 510

Query: 591 DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650
                ++A+ +L  ++   I  D++LY +I+   C + +++  + I+E+M    +  +P 
Sbjct: 511 KAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPV 570

Query: 651 TCHFVFSGYVNCGFHNSAMEALQ 673
               +   Y   G  + A+   Q
Sbjct: 571 ISTTIIDAYFKAGKSSDALNFFQ 593



 Score = 77.0 bits (188), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 92/407 (22%), Positives = 165/407 (40%), Gaps = 32/407 (7%)

Query: 295 SFSDVIHA-CGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           ++S +I A C      G A +L + M+  GL P+  TY   I A      L    ++L  
Sbjct: 396 TYSTLIDAFCKEGMMQG-AIKLFVDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLND 454

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALL-----DQISRCTNPKPFSAFLAACDTM 408
           M Q  +K    T   L     KA  +  AE +      D IS   N + ++A +      
Sbjct: 455 MLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGIS--PNQQVYTALVHGYIKA 512

Query: 409 DKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM- 466
           ++ E A+KI  +M +  ++PD+  Y                G++     S +++   ++ 
Sbjct: 513 ERMEDAMKILKQMTECNIKPDLILY----------------GSIIWGHCSQRKLEETKLI 556

Query: 467 --DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFC---DSKTPLGTPTYNTVLHSLVE 521
             +M    I  + +    ++ A    G   + + +F    D        TY  ++  L +
Sbjct: 557 LEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCK 616

Query: 522 AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMT 581
           A     A++ F +M + G+ PN A Y  +ID      C +SA  L   M   G  P    
Sbjct: 617 AGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCKNNCIESAKKLFDEMQCRGMTPDITA 676

Query: 582 YTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMH 641
           +TALI   L +G+  EAL L+  ++   I  D+ +Y +++    + G +        +M 
Sbjct: 677 FTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMI 736

Query: 642 QNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLE 688
           +  + P+   C  +   Y   G  + A+E    +    L  E +T++
Sbjct: 737 EKGILPEEVLCICLLREYYKRGQLDEAIELKNEMERMGLITESATMQ 783



 Score = 70.1 bits (170), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 82/396 (20%), Positives = 157/396 (39%), Gaps = 55/396 (13%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ +I   G+  +      L  +M+ +G  P   TY+G I        +    E    M
Sbjct: 326 TYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEM 385

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERA 414
           + N LKP   T +TL       ++    E ++                         + A
Sbjct: 386 KNNGLKPNVVTYSTL-------IDAFCKEGMM-------------------------QGA 413

Query: 415 IKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNI 473
           IK+F  MR+  L P+  TY  L      ++A  + GN+    ++ K +N    DM +  +
Sbjct: 414 IKLFVDMRRTGLLPNEFTYTSL------IDANCKAGNL---TEAWKLLN----DMLQAGV 460

Query: 474 QHSHISMKNLLKALGAEGMIRELIQYF----CDSKTPLGTPTYNTVLHSLVEAQESHRAM 529
           + + ++   LL  L   G + E  + F     D  +P     Y  ++H  ++A+    AM
Sbjct: 461 KLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISP-NQQVYTALVHGYIKAERMEDAM 519

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
           +I KQM  C I P+   Y  +I      R  +    ++  M   G     +  T +I   
Sbjct: 520 KILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAY 579

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649
              G   +ALN    +   G+   ++ Y  ++   C+ G +++      +M    +QP+ 
Sbjct: 580 FKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCKAGIVELAVDYFCRMLSLGLQPNV 639

Query: 650 STCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVS 685
           +    V++  ++    N+ +E+ + L   M C  ++
Sbjct: 640 A----VYTSLIDGLCKNNCIESAKKLFDEMQCRGMT 671



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/221 (19%), Positives = 90/221 (40%), Gaps = 10/221 (4%)

Query: 431 TYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAE 490
            +++LFS+F  +    E    FS++   +    +    + N + H        L   G  
Sbjct: 221 VFDVLFSVFVELGLLEEANECFSRM---RNFRTLPKARSCNFLLHR-------LSKSGNG 270

Query: 491 GMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIM 550
            ++R+       +       TYN ++  L +  +   +  +F QM+  G+ P+  TYN +
Sbjct: 271 QLVRKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSL 330

Query: 551 IDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGI 610
           ID    +   +  ++L + M   G  P  +TY  LI     +     A      +   G+
Sbjct: 331 IDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGL 390

Query: 611 PHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
             +V+ Y+T++   C++G +     +   M +  + P+  T
Sbjct: 391 KPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFT 431



 Score = 56.6 bits (135), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 60/275 (21%), Positives = 116/275 (42%), Gaps = 13/275 (4%)

Query: 409 DKPERAIKIF--AKMRQKLRPDIRTYELLFSL------FGNVNAPYEEGNMFSQVDSAKR 460
           + P+ A+K F  A  +   R    +Y ++  L      + + +   +E  M S++D    
Sbjct: 141 EDPKLALKFFKWAGSQVGFRHTTESYCIIVHLVFRARMYTDAHDTVKEVIMNSRMDMGFP 200

Query: 461 I-NAIEMDMARNNIQHSHISMKNLLKALGAE-GMIRELIQYFCDSKTPLGTP---TYNTV 515
           + N  +M  +  NI  S   + ++L ++  E G++ E  + F   +     P   + N +
Sbjct: 201 VCNIFDMLWSTRNICVSGSGVFDVLFSVFVELGLLEEANECFSRMRNFRTLPKARSCNFL 260

Query: 516 LHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGF 575
           LH L ++       + F  M   GI P+  TYN+MID        +++  L   M   G 
Sbjct: 261 LHRLSKSGNGQLVRKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGL 320

Query: 576 YPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEF 635
            P  +TY +LI      G  +E  +L + +   G   D++ YN ++   C+  ++     
Sbjct: 321 SPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFE 380

Query: 636 IIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAME 670
              +M  N ++P+  T   +   +   G    A++
Sbjct: 381 YFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIK 415



 Score = 44.3 bits (103), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 83/380 (21%), Positives = 152/380 (40%), Gaps = 33/380 (8%)

Query: 96  YCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIY 155
           YC     P    E +  M+   +  N   Y  ++ A CK G ++ A  L   +  R G+ 
Sbjct: 369 YCKFEKMPR-AFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLFVDM-RRTGLL 426

Query: 156 PILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEI 215
           P    Y S + A  K  ++  A   L+ M    V  N VTYT LL        +    E+
Sbjct: 427 PNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEV 486

Query: 216 WEDYIKH-YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA------LAMMGKLYINRTS 268
           +   +K   S +       V  + +   ++ A + L+ M        L + G +     S
Sbjct: 487 FRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCS 546

Query: 269 EGRLRSSRLDI----PIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGL 324
           + +L  ++L +       ++A PV+       + +I A  +   S  A     +MQ +G+
Sbjct: 547 QRKLEETKLILEEMKSRGISANPVIS------TTIIDAYFKAGKSSDALNFFQEMQDVGV 600

Query: 325 QPSSHTY----DGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELD 380
           + +  TY    DG  +A + +  +     +L +  Q N+    S I  L     K   ++
Sbjct: 601 EATIVTYCVLIDGLCKAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGL----CKNNCIE 656

Query: 381 LAEALLDQISRCTNPKP-FSAFLAACDTMDKP---ERAIKIFAKMRQ-KLRPDIRTYELL 435
            A+ L D++ +C    P  +AF A  D   K    + A+ + ++M +  +  D+  Y  L
Sbjct: 657 SAKKLFDEM-QCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSL 715

Query: 436 FSLFGNVNAPYEEGNMFSQV 455
            S F      ++    F+++
Sbjct: 716 VSGFSQCGELHQARKFFNEM 735


>gi|326528911|dbj|BAJ97477.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 913

 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 114/248 (45%), Gaps = 12/248 (4%)

Query: 429 IRTYELLFSLFGNVNAPYEEGNMFSQVDSA-KRINAIEMDMARNNIQHSHISMKNLLKAL 487
           I TY +L S FG +N      N+F +  +    +N I      +NI H+H    N+ +A 
Sbjct: 347 IVTYSILISGFGKINDTQSADNLFKEAKTNLGDLNGI----IYSNIIHAHCQSGNMDRA- 401

Query: 488 GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATY 547
             E ++ E+ +   D+  P+    Y++++H     Q+  + + +F+++K C   P+  +Y
Sbjct: 402 --EELVHEMEEDGIDA--PIDA--YHSMMHGYTIIQDEKKCLIVFERLKECCFTPSIISY 455

Query: 548 NIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSL 607
             +I+    I     A A+   M   G      TY+ LI   +   DF  A  + + +  
Sbjct: 456 GCLINLYVKIGKVAKAIAISKEMESSGIKHNNKTYSMLISGFIHLHDFTNAFRIFEEMLK 515

Query: 608 EGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNS 667
            G+  D  +YN +++  C+ G +D    I+E+M + ++QP       +  G+   G    
Sbjct: 516 SGLQPDRAIYNLLIEAFCKMGNMDRAIRILEKMQKERMQPSNRAFRPIIEGFAVAGDMKR 575

Query: 668 AMEALQVL 675
           A++ L ++
Sbjct: 576 ALDILDLM 583



 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 85/425 (20%), Positives = 168/425 (39%), Gaps = 57/425 (13%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           +S++IHA  ++ N   AE+L+ +M+  G+      Y   +      +  +  + V + ++
Sbjct: 385 YSNIIHAHCQSGNMDRAEELVHEMEEDGIDAPIDAYHSMMHGYTIIQDEKKCLIVFERLK 444

Query: 356 QNNLKPQ---DSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPE 412
           +    P       +  L V+  K  +       ++      N K +S  ++    +    
Sbjct: 445 ECCFTPSIISYGCLINLYVKIGKVAKAIAISKEMESSGIKHNNKTYSMLISGFIHLHDFT 504

Query: 413 RAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471
            A +IF +M +  L+PD   Y LL   F  +      GNM    D A RI  +E  M + 
Sbjct: 505 NAFRIFEEMLKSGLQPDRAIYNLLIEAFCKM------GNM----DRAIRI--LE-KMQKE 551

Query: 472 NIQHSHISMKNLLKALGAEGMIR---ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRA 528
            +Q S+ + + +++     G ++   +++     S       TYN ++H L+   +  RA
Sbjct: 552 RMQPSNRAFRPIIEGFAVAGDMKRALDILDLMRRSGCAPTVMTYNALIHGLIRKNQVERA 611

Query: 529 MEIFKQMKTCGIPPNAATYNIMID------------------------------------ 552
           + +  +M   GI PN  TY I++                                     
Sbjct: 612 VSVLNKMSIAGITPNEHTYTIIMRGYAATGDIAKAFEYFTKIKEGGLKLDVYIYETLLRA 671

Query: 553 CCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPH 612
           CC   R  +SA A+   M        T  Y  LI      GD  EA +L+  +  +G+P 
Sbjct: 672 CCKSGR-MQSALAVTREMSSQKIARNTFVYNILIDGWARRGDVWEAADLMKQMKEDGVPP 730

Query: 613 DVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEAL 672
           ++  Y + +   C+ G +   + +I++M    ++P+  T   +  G+      + A++  
Sbjct: 731 NIHTYTSYINACCKAGDMQRAQTVIDEMSDVGLKPNLKTYTTLIKGWARASLPDRALKCF 790

Query: 673 QVLSM 677
           + + +
Sbjct: 791 EEMKL 795



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 61/142 (42%), Gaps = 10/142 (7%)

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
           + H A   F+ M+  GI PNA  +  ++   ++ R  + A +    M  +G     +TY+
Sbjct: 292 DKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMRGALSCTEEMKAEGIELTIVTYS 351

Query: 584 ALIKILLDYGDFDEALNLL-----DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIE 638
            LI       D   A NL      +L  L GI     +Y+ I+   C+ G +D  E ++ 
Sbjct: 352 ILISGFGKINDTQSADNLFKEAKTNLGDLNGI-----IYSNIIHAHCQSGNMDRAEELVH 406

Query: 639 QMHQNKVQPDPSTCHFVFSGYV 660
           +M ++ +       H +  GY 
Sbjct: 407 EMEEDGIDAPIDAYHSMMHGYT 428



 Score = 46.6 bits (109), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 1/109 (0%)

Query: 93  ILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERY 152
           +L  C +S      +   R M  ++I  N   Y +++    + G + EA++L+  + E  
Sbjct: 668 LLRACCKSGRMQSALAVTREMSSQKIARNTFVYNILIDGWARRGDVWEAADLMKQMKED- 726

Query: 153 GIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLK 201
           G+ P +  Y S++ AC K   M  A   +D M    +  N  TYT L+K
Sbjct: 727 GVPPNIHTYTSYINACCKAGDMQRAQTVIDEMSDVGLKPNLKTYTTLIK 775


>gi|296081998|emb|CBI21003.3| unnamed protein product [Vitis vinifera]
          Length = 837

 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 90/413 (21%), Positives = 176/413 (42%), Gaps = 56/413 (13%)

Query: 289 MKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGM 348
           +K+   ++S +I A  +  NS L  +L+ +M+  G  PS  T+   I A V+     N +
Sbjct: 251 VKLDAGAYSIIIQAVCKKPNSNLGLELLEEMKERGWVPSEATFTSVIVACVAQG---NMV 307

Query: 349 EVLKIMQQ--NNLKPQDSTIAT--LSVECSKALELDLAEALLDQISR---CTNPKPFSAF 401
           E L++ ++  N  KP +  +AT  +   C++   LD A  L ++I+      N   +S  
Sbjct: 308 EALRLKEEMINCGKPMNLVVATSLMKGYCAQG-NLDSALNLFNKITEDGLFPNKVTYSVL 366

Query: 402 LAACDTMDKPERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKR 460
           +  C      E+A +++ +M+   + P +     L  L G + AP  E         A +
Sbjct: 367 IEGCCNSGNIEKASELYTQMKLNGIPPSVFNVNSL--LRGYLKAPLWE--------EASK 416

Query: 461 INAIEMDMARNNIQHSHISMK------------NLLKALGAEGMIRELIQY--------- 499
           +    +D    NI   +I M             +LL  +  +GM+  ++ Y         
Sbjct: 417 LFDEAVDCGVANIFTYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCR 476

Query: 500 ----------FCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAAT 546
                     F D       P   TY+ ++    +  +S +A+++F QM +  I P   T
Sbjct: 477 KGNMDMASSVFSDMLARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFT 536

Query: 547 YNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVS 606
           +N +I+    +     A   +   + +GF P  MTY +++   +  G+ D AL +   + 
Sbjct: 537 FNTIINGLCKVGQMSEARDKLKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMC 596

Query: 607 LEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
             G+  +V+ Y +++   C+  RID+     ++M +  ++ D +    +  G+
Sbjct: 597 EFGVSPNVVTYTSLINGFCKSNRIDLALKTRDEMREKGLELDVTAYSALIDGF 649



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 94/410 (22%), Positives = 174/410 (42%), Gaps = 42/410 (10%)

Query: 291 VLRWSFSD------VIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGL 344
           VLR  + D      ++ AC +      AE+   + +  G++  +  Y   I+A+      
Sbjct: 212 VLRGIYGDHFTVHVMVRACLKEGRVEEAEEYFRETKERGVKLDAGAYSIIIQAVCKKPNS 271

Query: 345 RNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPF---SAF 401
             G+E+L+ M++    P ++T  ++ V C     +  A  L +++  C  P      ++ 
Sbjct: 272 NLGLELLEEMKERGWVPSEATFTSVIVACVAQGNMVEALRLKEEMINCGKPMNLVVATSL 331

Query: 402 LAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKR 460
           +         + A+ +F K+ +  L P+  TY +L    G  N+    GN+       ++
Sbjct: 332 MKGYCAQGNLDSALNLFNKITEDGLFPNKVTYSVLIE--GCCNS----GNI-------EK 378

Query: 461 INAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLH 517
            + +   M  N I  S  ++ +LL+      +  E  + F D     G     TYN ++ 
Sbjct: 379 ASELYTQMKLNGIPPSVFNVNSLLRGYLKAPLWEEASKLF-DEAVDCGVANIFTYNIMMS 437

Query: 518 SLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKS----ASALVSMMVRD 573
            L +  +   A  +   M   G+ PN  +YN MI    +  C K     AS++ S M+  
Sbjct: 438 WLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMI----LGHCRKGNMDMASSVFSDMLAR 493

Query: 574 GFYPQTMTYTALIKILLDYGDFDEALNLLD-LVSLEGIPHDVLLYNTILKKACEKGRIDV 632
              P  +TY+ LI      GD ++AL+L D ++SL   P D   +NTI+   C+ G++  
Sbjct: 494 DLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTD-FTFNTIINGLCKVGQMSE 552

Query: 633 IEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCE 682
               ++   +    P   T + +  G++  G  +SA+        R +CE
Sbjct: 553 ARDKLKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVY-----REMCE 597



 Score = 68.9 bits (167), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 46/196 (23%), Positives = 91/196 (46%), Gaps = 3/196 (1%)

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSK---TPLGTPTYNTVLHSLVEAQE 524
           M    I   H ++  +++A   EG + E  +YF ++K     L    Y+ ++ ++ +   
Sbjct: 211 MVLRGIYGDHFTVHVMVRACLKEGRVEEAEEYFRETKERGVKLDAGAYSIIIQAVCKKPN 270

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
           S+  +E+ ++MK  G  P+ AT+  +I  C        A  L   M+  G     +  T+
Sbjct: 271 SNLGLELLEEMKERGWVPSEATFTSVIVACVAQGNMVEALRLKEEMINCGKPMNLVVATS 330

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
           L+K     G+ D ALNL + ++ +G+  + + Y+ +++  C  G I+    +  QM  N 
Sbjct: 331 LMKGYCAQGNLDSALNLFNKITEDGLFPNKVTYSVLIEGCCNSGNIEKASELYTQMKLNG 390

Query: 645 VQPDPSTCHFVFSGYV 660
           + P     + +  GY+
Sbjct: 391 IPPSVFNVNSLLRGYL 406



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 130/610 (21%), Positives = 243/610 (39%), Gaps = 107/610 (17%)

Query: 127 LMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGA-CAKLHSMVHANLCLDLMD 185
           +M++A  K G +EEA        ER G+      Y+  + A C K +S +   L L+ M 
Sbjct: 225 VMVRACLKEGRVEEAEEYFRETKER-GVKLDAGAYSIIIQAVCKKPNSNLGLEL-LEEMK 282

Query: 186 SRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKS 245
            R    +E T+T ++   V Q N+     + E+ I                        +
Sbjct: 283 ERGWVPSEATFTSVIVACVAQGNMVEALRLKEEMI------------------------N 318

Query: 246 AYETLQHMVALAMMGKLYINRTSEGRLRSS-RLDIPIPLNALPVMKVLRWSFSDVIHACG 304
             + +  +VA ++M K Y    ++G L S+  L   I  + L   KV   ++S +I  C 
Sbjct: 319 CGKPMNLVVATSLM-KGY---CAQGNLDSALNLFNKITEDGLFPNKV---TYSVLIEGCC 371

Query: 305 RTQNSGLAEQLMLQMQSLGLQPSSHTYD----GFIRAIVSDRGLRNGMEVLKIMQQNNLK 360
            + N   A +L  QM+  G+ PS    +    G+++A + +   +   E +     N   
Sbjct: 372 NSGNIEKASELYTQMKLNGIPPSVFNVNSLLRGYLKAPLWEEASKLFDEAVDCGVAN--- 428

Query: 361 PQDSTIATLSVECS---KALELDLAEALLDQ-ISRCTNPKPFS---AFLAACDTMDKPER 413
                I T ++  S   K  ++D A +LLD  +++   P   S     L  C   +  + 
Sbjct: 429 -----IFTYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNM-DM 482

Query: 414 AIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNN 472
           A  +F+ M  + L+P++ TY +L            +GN F + DS K ++  +  M   N
Sbjct: 483 ASSVFSDMLARDLKPNVVTYSILI-----------DGN-FKKGDSEKALDLFDQ-MLSLN 529

Query: 473 IQHSHISMKNLLKALGAEGMI---RELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAM 529
           I  +  +   ++  L   G +   R+ ++ F +        TYN+++   ++      A+
Sbjct: 530 IAPTDFTFNTIINGLCKVGQMSEARDKLKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSAL 589

Query: 530 EIFKQMKTCGIPPNAATY-----------------------------------NIMIDCC 554
            ++++M   G+ PN  TY                                   + +ID  
Sbjct: 590 AVYREMCEFGVSPNVVTYTSLINGFCKSNRIDLALKTRDEMREKGLELDVTAYSALIDGF 649

Query: 555 SIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDV 614
              R  +SA  L   ++  G  P  + Y ++I    D  + + AL     +  + IP D+
Sbjct: 650 CKRRDMESAQDLFFELLEVGLSPNRIVYNSMISGFRDLNNMEAALVWYKKMINDRIPCDL 709

Query: 615 LLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQV 674
             Y T++    ++GR+     +  +M    + PD  T H + +G  N G   +A + L+ 
Sbjct: 710 GTYTTLIDGLLKEGRLVFASDLYMEMLSKGIVPDIITFHVLVNGLCNKGQLENARKILEE 769

Query: 675 LSMRMLCEEV 684
           +  + +   V
Sbjct: 770 MDRKNMTPSV 779



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 117/570 (20%), Positives = 223/570 (39%), Gaps = 31/570 (5%)

Query: 108 ETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGA 167
           E +R  +E+ + L+   Y +++QA+CK         L+  + ER G  P    + S + A
Sbjct: 241 EYFRETKERGVKLDAGAYSIIIQAVCKKPNSNLGLELLEEMKER-GWVPSEATFTSVIVA 299

Query: 168 CAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAV----HEIWEDYIKHY 223
           C    +MV A    + M +     N V  T L+K    Q NL +     ++I ED +   
Sbjct: 300 CVAQGNMVEALRLKEEMINCGKPMNLVVATSLMKGYCAQGNLDSALNLFNKITEDGLFPN 359

Query: 224 SLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLY-INRTSEGRLRSSRLDIPIP 282
            ++   L   +       +++ A E    M    +   ++ +N    G L++   +    
Sbjct: 360 KVTYSVL---IEGCCNSGNIEKASELYTQMKLNGIPPSVFNVNSLLRGYLKAPLWEEASK 416

Query: 283 L--NALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVS 340
           L   A+       ++++ ++    +      A  L+  M + G+ P+  +Y+  I     
Sbjct: 417 LFDEAVDCGVANIFTYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCR 476

Query: 341 DRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPKPFS 399
              +     V   M   +LKP   T + L     K  + + A  L DQ +S    P  F+
Sbjct: 477 KGNMDMASSVFSDMLARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFT 536

Query: 400 ---AFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVD 456
                   C      E   K+   + +   P   TY  +   F       +EGN    +D
Sbjct: 537 FNTIINGLCKVGQMSEARDKLKNFLEEGFIPSCMTYNSIVDGF------IKEGN----ID 586

Query: 457 SAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQY---FCDSKTPLGTPTYN 513
           SA    A+  +M    +  + ++  +L+        I   ++      +    L    Y+
Sbjct: 587 SAL---AVYREMCEFGVSPNVVTYTSLINGFCKSNRIDLALKTRDEMREKGLELDVTAYS 643

Query: 514 TVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRD 573
            ++    + ++   A ++F ++   G+ PN   YN MI     +   ++A      M+ D
Sbjct: 644 ALIDGFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMISGFRDLNNMEAALVWYKKMIND 703

Query: 574 GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVI 633
                  TYT LI  LL  G    A +L   +  +GI  D++ ++ ++   C KG+++  
Sbjct: 704 RIPCDLGTYTTLIDGLLKEGRLVFASDLYMEMLSKGIVPDIITFHVLVNGLCNKGQLENA 763

Query: 634 EFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
             I+E+M +  + P     + + +GY   G
Sbjct: 764 RKILEEMDRKNMTPSVLIYNTLIAGYFREG 793



 Score = 48.1 bits (113), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 81/438 (18%), Positives = 177/438 (40%), Gaps = 57/438 (13%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNS-FLGACAKLHSMVHANLCLDL 183
           Y +MM  LCKGG ++EA +L+  +  + G+ P +  YN   LG C K +  + +++  D+
Sbjct: 432 YNIMMSWLCKGGKMDEACSLLDNMVNQ-GMVPNVVSYNDMILGHCRKGNMDMASSVFSDM 490

Query: 184 MDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK-HYSLSIFSLRKFVWSFTRLRD 242
           + +R +  N VTY+ L+     + +     ++++  +  + + + F+    +    ++  
Sbjct: 491 L-ARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQ 549

Query: 243 LKSAYETLQHMVALAMMGK-LYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIH 301
           +  A + L++ +    +   +  N   +G ++   +D     +AL V +           
Sbjct: 550 MSEARDKLKNFLEEGFIPSCMTYNSIVDGFIKEGNID-----SALAVYR----------- 593

Query: 302 ACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKP 361
                           +M   G+ P+  TY   I        +   ++    M++  L+ 
Sbjct: 594 ----------------EMCEFGVSPNVVTYTSLINGFCKSNRIDLALKTRDEMREKGLEL 637

Query: 362 QDSTIATLSVECSKALELDLAEAL---LDQISRCTNPKPFSAFLAACDTMDKPERAIKIF 418
             +  + L     K  +++ A+ L   L ++    N   +++ ++    ++  E A+  +
Sbjct: 638 DVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMISGFRDLNNMEAALVWY 697

Query: 419 AKMRQKLRP-DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSH 477
            KM     P D+ TY  L      ++   +EG +    D       + M+M    I    
Sbjct: 698 KKMINDRIPCDLGTYTTL------IDGLLKEGRLVFASD-------LYMEMLSKGIVPDI 744

Query: 478 ISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPT---YNTVLHSLVEAQESHRAMEIFKQ 534
           I+   L+  L  +G +    +   +      TP+   YNT++           A  +  +
Sbjct: 745 ITFHVLVNGLCNKGQLENARKILEEMDRKNMTPSVLIYNTLIAGYFREGNLKEAFTLHDE 804

Query: 535 MKTCGIPPNAATYNIMID 552
           M   G+ P+  TY+I+I+
Sbjct: 805 MLDRGLVPDDVTYDILIN 822



 Score = 40.4 bits (93), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 35/164 (21%), Positives = 66/164 (40%), Gaps = 3/164 (1%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
            +N +L++ + A     A++ F  M    + P     NI++              L + M
Sbjct: 152 VFNYLLNAYIRANRIENAIDCFNAMICQDVIPWVPYMNILLTALVRRNMIGELRDLYNKM 211

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           V  G Y    T   +++  L  G  +EA          G+  D   Y+ I++  C+K   
Sbjct: 212 VLRGIYGDHFTVHVMVRACLKEGRVEEAEEYFRETKERGVKLDAGAYSIIIQAVCKKPNS 271

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQV 674
           ++   ++E+M +    P  +T   V    V C    + +EAL++
Sbjct: 272 NLGLELLEEMKERGWVPSEATFTSVI---VACVAQGNMVEALRL 312


>gi|225459022|ref|XP_002285611.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like isoform 1 [Vitis vinifera]
          Length = 610

 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 82/343 (23%), Positives = 151/343 (44%), Gaps = 21/343 (6%)

Query: 350 VLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAA-CDTM 408
           V++I++Q+   P   T   L     K+ E+D A  +LD+++   +   ++  L   CD+ 
Sbjct: 171 VMEILEQSGAVPDVITYNVLISGYCKSGEIDNALQVLDRMNVAPDVVTYNTILRTLCDS- 229

Query: 409 DKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMD 467
            K ++A+++  +  QK   PD+ TY +L      + A  +E    S V  A ++    +D
Sbjct: 230 GKLKQAMEVLDRQLQKECYPDVITYTIL------IEATCKE----SGVGQAMKL----LD 275

Query: 468 MARNNIQHSHISMKN-LLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQ 523
             RN      +   N L+  +  EG + E I++  +  +    P   T+N +L S+    
Sbjct: 276 EMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTG 335

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
               A ++   M   G  P+  T+NI+I+          A  ++  M   G  P +++Y 
Sbjct: 336 RWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYN 395

Query: 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
            L+         D A+  LD++   G   D++ YNT+L   C+ G++DV   I+ Q+   
Sbjct: 396 PLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSK 455

Query: 644 KVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
              P   T + V  G    G    A++ L  +  + L  ++ T
Sbjct: 456 GCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIIT 498



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 93/372 (25%), Positives = 151/372 (40%), Gaps = 30/372 (8%)

Query: 326 PSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEAL 385
           P   TY   I A   + G+   M++L  M+    KP   T   L     K   LD A   
Sbjct: 249 PDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKF 308

Query: 386 LDQI-SRCTNPKPFS---AFLAACDT---MDKPERAIKIFAKM-RQKLRPDIRTYELLFS 437
           L+ + S    P   +      + C T   MD    A K+ + M R+   P + T+ +L  
Sbjct: 309 LNNMPSYGCQPNVITHNIILRSMCSTGRWMD----AEKLLSDMLRKGCSPSVVTFNIL-- 362

Query: 438 LFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELI 497
               +N    +G +   +D  ++       M  +    + +S   LL     E  +   I
Sbjct: 363 ----INFLCRQGLLGRAIDILEK-------MPMHGCTPNSLSYNPLLHGFCKEKKMDRAI 411

Query: 498 QYFCDSKTPLG----TPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC 553
           +Y  D     G      TYNT+L +L +  +   A+EI  Q+ + G  P   TYN +ID 
Sbjct: 412 EYL-DIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDG 470

Query: 554 CSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHD 613
            S +   + A  L+  M R G  P  +TY++L+  L   G  DEA+     +   GI  +
Sbjct: 471 LSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPN 530

Query: 614 VLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
            + YN+I+   C+  + D     +  M   + +P  +T   +  G    G    A++ L 
Sbjct: 531 AITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLN 590

Query: 674 VLSMRMLCEEVS 685
            L  R L ++ S
Sbjct: 591 ELCSRGLVKKSS 602



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 83/367 (22%), Positives = 156/367 (42%), Gaps = 51/367 (13%)

Query: 309 SGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIAT 368
           SG  +  +  +  + + P   TY+  +R +     L+  MEVL    Q    P   T   
Sbjct: 197 SGEIDNALQVLDRMNVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTI 256

Query: 369 LSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRP 427
           L       +E    E+ + Q                         A+K+  +MR K  +P
Sbjct: 257 L-------IEATCKESGVGQ-------------------------AMKLLDEMRNKGSKP 284

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI--NAIEMDMARNNIQHSHI--SMKNL 483
           D+ TY +L      +N   +EG    ++D A +   N        N I H+ I  SM + 
Sbjct: 285 DVVTYNVL------INGICKEG----RLDEAIKFLNNMPSYGCQPNVITHNIILRSMCST 334

Query: 484 LKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPN 543
            + + AE ++ ++++  C         T+N +++ L       RA++I ++M   G  PN
Sbjct: 335 GRWMDAEKLLSDMLRKGCSPS----VVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPN 390

Query: 544 AATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLD 603
           + +YN ++      +    A   + +MV  G YP  +TY  L+  L   G  D A+ +L+
Sbjct: 391 SLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILN 450

Query: 604 LVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
            +S +G    ++ YNT++    + G+ +    ++++M +  ++PD  T   + SG    G
Sbjct: 451 QLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREG 510

Query: 664 FHNSAME 670
             + A++
Sbjct: 511 KVDEAIK 517



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 98/473 (20%), Positives = 193/473 (40%), Gaps = 29/473 (6%)

Query: 128 MMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSR 187
           +++  C+ G  ++A+ ++  L E+ G  P +  YN  +    K   + +A   L ++D  
Sbjct: 155 LIRGFCRIGKTKKATWVMEIL-EQSGAVPDVITYNVLISGYCKSGEIDNA---LQVLDRM 210

Query: 188 MVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYSLSIFSLRKFVWSFTRLRDLKSA 246
            V  + VTY  +L+       L    E+ +  + K     + +    + +  +   +  A
Sbjct: 211 NVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQA 270

Query: 247 YETLQHMVALAMMGKLYI-NRTSEGRLRSSRLDIPIP-LNALPVMKVLR--WSFSDVIHA 302
            + L  M        +   N    G  +  RLD  I  LN +P         + + ++ +
Sbjct: 271 MKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRS 330

Query: 303 CGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQ 362
              T     AE+L+  M   G  PS  T++  I  +     L   +++L+ M  +   P 
Sbjct: 331 MCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPN 390

Query: 363 DSTIATLSVECSKALELDLAEALLD-QISRCTNPK--PFSAFLAACDTMDKPERAIKIFA 419
             +   L     K  ++D A   LD  +SR   P    ++  L A     K + A++I  
Sbjct: 391 SLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILN 450

Query: 420 KMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHI 478
           ++  K   P + TY  +              +  S+V   +R   +  +M R  ++   I
Sbjct: 451 QLSSKGCSPVLITYNTVI-------------DGLSKVGKTERAIKLLDEMRRKGLKPDII 497

Query: 479 SMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQM 535
           +  +L+  L  EG + E I++F D +     P   TYN+++  L +++++ RA++    M
Sbjct: 498 TYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYM 557

Query: 536 KTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
            +    P  ATY I+I+  +     K A  L++ +   G   ++      +K+
Sbjct: 558 ISKRCKPTEATYTILIEGIAYEGLAKEALDLLNELCSRGLVKKSSAEQVAVKM 610



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 67/142 (47%), Gaps = 15/142 (10%)

Query: 516 LHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCF------KSASALVSM 569
           L  LV   E     +  + M   G  P+      +I C S+IR F      K A+ ++ +
Sbjct: 121 LRRLVRNGELEDGFKFLESMVYRGDIPD------IIPCTSLIRGFCRIGKTKKATWVMEI 174

Query: 570 MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
           + + G  P  +TY  LI      G+ D AL +LD ++   +  DV+ YNTIL+  C+ G+
Sbjct: 175 LEQSGAVPDVITYNVLISGYCKSGEIDNALQVLDRMN---VAPDVVTYNTILRTLCDSGK 231

Query: 630 IDVIEFIIEQMHQNKVQPDPST 651
           +     ++++  Q +  PD  T
Sbjct: 232 LKQAMEVLDRQLQKECYPDVIT 253



 Score = 43.5 bits (101), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 3/103 (2%)

Query: 570 MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
           MV  G  P  +  T+LI+     G   +A  +++++   G   DV+ YN ++   C+ G 
Sbjct: 140 MVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPDVITYNVLISGYCKSGE 199

Query: 630 IDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEAL 672
           ID    ++++M+   V PD  T + +     + G    AME L
Sbjct: 200 IDNALQVLDRMN---VAPDVVTYNTILRTLCDSGKLKQAMEVL 239



 Score = 40.0 bits (92), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 56/269 (20%), Positives = 109/269 (40%), Gaps = 18/269 (6%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGE--RYGIYPILPVYNSFLGACAKLHSMVHANLCLD 182
           Y +++  +CK G L+EA   I FL     YG  P +  +N  L +       + A   L 
Sbjct: 289 YNVLINGICKEGRLDEA---IKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLS 345

Query: 183 LMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH-YSLSIFSLRKFVWSFTRLR 241
            M  +    + VT+  L+     Q  L    +I E    H  + +  S    +  F + +
Sbjct: 346 DMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEK 405

Query: 242 DLKSAYETLQHMVALAMMGKLYINRTSEGRL-RSSRLDIPIP-LNAL------PVMKVLR 293
            +  A E L  MV+      +    T    L +  ++D+ +  LN L      PV+    
Sbjct: 406 KMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVL---- 461

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
            +++ VI    +   +  A +L+ +M+  GL+P   TY   +  +  +  +   ++    
Sbjct: 462 ITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHD 521

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLA 382
           ++   ++P   T  ++ +   K+ + D A
Sbjct: 522 LEGLGIRPNAITYNSIMLGLCKSRQTDRA 550


>gi|302794007|ref|XP_002978768.1| hypothetical protein SELMODRAFT_109608 [Selaginella moellendorffii]
 gi|300153577|gb|EFJ20215.1| hypothetical protein SELMODRAFT_109608 [Selaginella moellendorffii]
          Length = 713

 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 75/161 (46%)

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           Y TVL+   E ++  + +  F ++K CG+ P AATY  ++   +       A  ++  M 
Sbjct: 274 YTTVLNGFAEIRDEEKCLSFFHRLKACGLSPTAATYGCIVKLFTKAGNMAKALDILEEMD 333

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
           + G  P  M Y  ++      GDF  A  + + +   G+  D++ YN ++   C+ GR+D
Sbjct: 334 KHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKPDIVTYNILVHAFCKAGRMD 393

Query: 632 VIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEAL 672
               ++E +  N++ P   T   +  GYV  G    A+E  
Sbjct: 394 KALGVLENIQANRLLPTIETYTSILDGYVKGGHIQKALEVF 434



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 116/544 (21%), Positives = 212/544 (38%), Gaps = 36/544 (6%)

Query: 154 IYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLK-LAVWQKNLSAV 212
           I P + +Y S + A A+   M  A  C + M S+ +  NE  +  ++   A    N +A 
Sbjct: 162 IKPNVHIYTSLIHAYAEARDMEGAVACTEEMLSQGIQLNEAVFCSIISGYASAGNNEAAE 221

Query: 213 HEIWEDYIKHYSLSIFSL--RKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEG 270
           H  W +  K  +L    +     V ++ +  ++++    L  M      G L +  T   
Sbjct: 222 H--WFEKFKAENLVPGGIVYNSIVQAYCQAGNMETVEALLAQMEEEGFQGNLGLYTTVLN 279

Query: 271 RLRSSRLDIPIPLNALPVMKVLRWSFSDVIHAC-----GRTQNSGLAEQLMLQMQSLGLQ 325
                R D    L+    +K    S +   + C      +  N   A  ++ +M   G+ 
Sbjct: 280 GFAEIR-DEEKCLSFFHRLKACGLSPTAATYGCIVKLFTKAGNMAKALDILEEMDKHGVS 338

Query: 326 PSSHTYDGFIRAIVSDRGLRNG-----MEVLKIMQQNNLKPQDSTIATLSVECSKALELD 380
           P+   Y     A++ D   R G      +V + M    LKP   T   L     KA  +D
Sbjct: 339 PNKMIY-----AMIMDGYARGGDFTAAFKVWEDMVSAGLKPDIVTYNILVHAFCKAGRMD 393

Query: 381 LAEALLDQISRCTNPKPFSAFLAACDTMDKP---ERAIKIFAKMRQK-LRPDIRTYELLF 436
            A  +L+ I           + +  D   K    ++A+++F +++   LRP + +Y  L 
Sbjct: 394 KALGVLENIQANRLLPTIETYTSILDGYVKGGHIQKALEVFDRIKTAGLRPGVVSYNSLL 453

Query: 437 SLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIREL 496
           S  G   A   E N    +D       +  + +   +   +    ++ KA G       +
Sbjct: 454 S--GLAKARQME-NARLMLDEMLANGVVPNERSYTALTEGYARAGDVEKAFG-------M 503

Query: 497 IQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSI 556
            Q        +    Y  +L +  ++    RA+E+F+Q+   G+  N  TY  M+D  + 
Sbjct: 504 FQRMKKENLAIDIVAYGALLKACCKSGAMQRAVEVFQQITDAGLKHNRITYCTMLDGWAR 563

Query: 557 IRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLL 616
                 A  L+  M + GF+  T+ YT+ IK     GD +E    L ++  + +  +   
Sbjct: 564 KGELSKARDLLKDMQKHGFHLDTICYTSFIKACFRSGDTEEVTETLAVMREKKLEVNART 623

Query: 617 YNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAM-EALQVL 675
           Y T++         D      EQ   + +Q D +  + + SG ++C   NS + E +Q +
Sbjct: 624 YTTLIHGWLAAADPDQAISCYEQAKASGLQLDSALSNCLLSGLISCASQNSTLGEKIQAI 683

Query: 676 SMRM 679
           S  +
Sbjct: 684 SAEI 687



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 84/462 (18%), Positives = 190/462 (41%), Gaps = 44/462 (9%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y  ++QA C+ G +E    L+  + E  G    L +Y + L   A++            +
Sbjct: 239 YNSIVQAYCQAGNMETVEALLAQM-EEEGFQGNLGLYTTVLNGFAEIRDEEKCLSFFHRL 297

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWS-----FTR 239
            +  +     TY  ++KL     N++   +I E+  KH      S  K +++     + R
Sbjct: 298 KACGLSPTAATYGCIVKLFTKAGNMAKALDILEEMDKHG----VSPNKMIYAMIMDGYAR 353

Query: 240 LRDLKSAYETLQHMVALAMMGKLYI-NRTSEGRLRSSRLDIPIPL-------NALPVMKV 291
             D  +A++  + MV+  +   +   N       ++ R+D  + +         LP ++ 
Sbjct: 354 GGDFTAAFKVWEDMVSAGLKPDIVTYNILVHAFCKAGRMDKALGVLENIQANRLLPTIE- 412

Query: 292 LRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVL 351
              +++ ++    +  +   A ++  ++++ GL+P   +Y+  +  +   R + N   +L
Sbjct: 413 ---TYTSILDGYVKGGHIQKALEVFDRIKTAGLRPGVVSYNSLLSGLAKARQMENARLML 469

Query: 352 KIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTM 408
             M  N + P + +   L+   ++A +++ A  +  ++ +     +   + A L AC   
Sbjct: 470 DEMLANGVVPNERSYTALTEGYARAGDVEKAFGMFQRMKKENLAIDIVAYGALLKACCKS 529

Query: 409 DKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMD 467
              +RA+++F ++    L+ +  TY  +   +        +G +    D  K       D
Sbjct: 530 GAMQRAVEVFQQITDAGLKHNRITYCTMLDGWAR------KGELSKARDLLK-------D 576

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRELIQYFC---DSKTPLGTPTYNTVLHSLVEAQE 524
           M ++      I   + +KA    G   E+ +      + K  +   TY T++H  + A +
Sbjct: 577 MQKHGFHLDTICYTSFIKACFRSGDTEEVTETLAVMREKKLEVNARTYTTLIHGWLAAAD 636

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASAL 566
             +A+  ++Q K  G+  ++A  N ++    +I C    S L
Sbjct: 637 PDQAISCYEQAKASGLQLDSALSNCLLS--GLISCASQNSTL 676


>gi|357127090|ref|XP_003565218.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Brachypodium distachyon]
          Length = 886

 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 118/564 (20%), Positives = 228/564 (40%), Gaps = 74/564 (13%)

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFL---GERYGIYPILPVYNSFLGACA 169
           M +K +  N   Y +++ +LCK G +++A  ++  +   G R  +YP    YNS +  C 
Sbjct: 363 MSDKGLEPNEVTYAILIHSLCKRGMMDDALCMLDRMREKGVRMTVYP----YNSLINCCC 418

Query: 170 KLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYSLSIF 228
           K   +  A   L  M    +  N  +Y+ ++     + +LS   E+      K  + + +
Sbjct: 419 KKDDLDMAMGFLSEMVEIGLTPNAASYSPVIAGLCRKGDLSGAVELHRKMAEKGVAWNTY 478

Query: 229 SLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPV 288
           +    +  F + + +  A              +L+ N+ +E  L  + +           
Sbjct: 479 TFTALINGFCKAKKMDEA-------------SRLF-NKMTESNLEPNEV----------- 513

Query: 289 MKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGM 348
                 +F+ VI       +   A QL  QM   GL P ++TY   I  +    G     
Sbjct: 514 ------TFNAVIEGYCLVGDIRKAFQLYDQMMCRGLTPDNYTYRSLISGLCLTDGASKAK 567

Query: 349 EVLKIMQQN-NLKPQDSTIATLSVECSKAL---------ELDLAEALLDQISRCTNPKPF 398
           E +  ++ N ++  + S  A L   C +           E+ +    LD IS       F
Sbjct: 568 EFVADLENNCSVLNKFSLTALLHGFCREGRLTEAYHVWNEMAMWGGKLDLIS-------F 620

Query: 399 SAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDS 457
           +  + A       E++  +F +M++K +RPD   +  + +++       +EGNM   ++ 
Sbjct: 621 TIIVYAALKQHDSEKSCVLFREMKEKGVRPDNVFHTCMINMYS------KEGNMVQALNC 674

Query: 458 AKRINAIEMDMARNNIQHSHISMKNLLKAL---GAEGMIRELIQYFCDSKTPLGTPTYNT 514
              +  I      N + ++ + + NL K+     AE + +E++     S     + T+N 
Sbjct: 675 WDEM--IADGHLPNTVTYTAL-VNNLCKSWHLSSAELLCKEMLA----SHFLPNSYTFNC 727

Query: 515 VLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDG 574
            L           A +++  M   G   N  + N +I     +   + A  L+S    +G
Sbjct: 728 FLDYFATEGNLETAKDLYFAMLQ-GFLANIVSVNTLIKGFCKVGQIQEAIDLISRSTENG 786

Query: 575 FYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIE 634
           F+P  ++Y+ +I  L   GD +EA+ L + +  +G+  D++ YN +++     G  D   
Sbjct: 787 FFPDCISYSTVIHELCKKGDINEAIELWNEMLYKGVKPDIVAYNILIRWCNIHGESDKCL 846

Query: 635 FIIEQMHQNKVQPDPSTCHFVFSG 658
            I   M +  VQP+  T   +F G
Sbjct: 847 GIYIDMVKKGVQPNWHTHRALFVG 870



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 88/434 (20%), Positives = 165/434 (38%), Gaps = 63/434 (14%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           + ++  I A    +N   A+ L+ +MQ  G + S+  Y+  I  +  ++ +R  ++V   
Sbjct: 198 YVYTAGIRAYCEVRNLDGAKGLVARMQDEGDKVSAVPYNVLIYGLCKNQRVREAVDVKNS 257

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTM----- 408
           M    +   + T  TL     +  ELD+A  +   ++R      F    A C  M     
Sbjct: 258 MLARGVAADEVTCRTLVYGFCRTEELDMALEMTGDMARLG----FVPSEANCSFMLDGLR 313

Query: 409 --DKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIE 465
              + E A ++  ++ + ++ P+I  Y  L      +N   + G MFS+ D         
Sbjct: 314 KKGRVEEAFRLACQLGELRMVPNIFAYNAL------LNNMCKNG-MFSEAD--------- 357

Query: 466 MDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQES 525
                                         L+    D        TY  ++HSL +    
Sbjct: 358 -----------------------------RLVNEMSDKGLEPNEVTYAILIHSLCKRGMM 388

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
             A+ +  +M+  G+      YN +I+CC        A   +S MV  G  P   +Y+ +
Sbjct: 389 DDALCMLDRMREKGVRMTVYPYNSLINCCCKKDDLDMAMGFLSEMVEIGLTPNAASYSPV 448

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           I  L   GD   A+ L   ++ +G+  +   +  ++   C+  ++D    +  +M ++ +
Sbjct: 449 IAGLCRKGDLSGAVELHRKMAEKGVAWNTYTFTALINGFCKAKKMDEASRLFNKMTESNL 508

Query: 646 QPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDFEDLILAEDSEA 705
           +P+  T + V  GY   G    A +    +  R L  +  T    RS    L L   ++ 
Sbjct: 509 EPNEVTFNAVIEGYCLVGDIRKAFQLYDQMMCRGLTPDNYTY---RSLISGLCL---TDG 562

Query: 706 ESRILQFCEDSNEN 719
            S+  +F  D   N
Sbjct: 563 ASKAKEFVADLENN 576



 Score = 48.5 bits (114), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 65/359 (18%), Positives = 142/359 (39%), Gaps = 25/359 (6%)

Query: 298 DVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQN 357
           D +   GR +    A +L  Q+  L + P+   Y+  +  +  +        ++  M   
Sbjct: 310 DGLRKKGRVEE---AFRLACQLGELRMVPNIFAYNALLNNMCKNGMFSEADRLVNEMSDK 366

Query: 358 NLKPQDSTIATLSVECSKALELDLAEALLDQIS----RCTNPKPFSAFLAACDTMDKPER 413
            L+P + T A L     K   +D A  +LD++     R T   P+++ +  C   D  + 
Sbjct: 367 GLEPNEVTYAILIHSLCKRGMMDDALCMLDRMREKGVRMT-VYPYNSLINCCCKKDDLDM 425

Query: 414 AIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNN 472
           A+   ++M +  L P+  +Y  + +          +G++   V+  ++       MA   
Sbjct: 426 AMGFLSEMVEIGLTPNAASYSPVIA------GLCRKGDLSGAVELHRK-------MAEKG 472

Query: 473 IQHSHISMKNLLKALGAEGMIRELIQYF---CDSKTPLGTPTYNTVLHSLVEAQESHRAM 529
           +  +  +   L+        + E  + F    +S       T+N V+       +  +A 
Sbjct: 473 VAWNTYTFTALINGFCKAKKMDEASRLFNKMTESNLEPNEVTFNAVIEGYCLVGDIRKAF 532

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
           +++ QM   G+ P+  TY  +I    +      A   V+ +  +       + TAL+   
Sbjct: 533 QLYDQMMCRGLTPDNYTYRSLISGLCLTDGASKAKEFVADLENNCSVLNKFSLTALLHGF 592

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
              G   EA ++ + +++ G   D++ +  I+  A ++   +    +  +M +  V+PD
Sbjct: 593 CREGRLTEAYHVWNEMAMWGGKLDLISFTIIVYAALKQHDSEKSCVLFREMKEKGVRPD 651


>gi|125572252|gb|EAZ13767.1| hypothetical protein OsJ_03693 [Oryza sativa Japonica Group]
          Length = 715

 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 143/661 (21%), Positives = 253/661 (38%), Gaps = 87/661 (13%)

Query: 58  QIVDALCRGERSRASHLLLNLGHAHHSLGADDFFH----ILNYCARSPDPLFVMETWRMM 113
           +++  LCR  R R S     L  A  S  A D F     +  YC        +    R++
Sbjct: 114 KLIRNLCR--RGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQ----LDAARRLI 167

Query: 114 EEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHS 173
               +  +   Y  +++ LC  G + EA +L+  +  R G  P +  Y   L A  K   
Sbjct: 168 ASMPVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHR-GCQPSVVTYTVLLEAVCKSTG 226

Query: 174 MVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKF 233
              A   LD M ++    N VTY  ++     +  +    E          LS +  +  
Sbjct: 227 FGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLN------RLSSYGFQPD 280

Query: 234 VWSFTR-LRDLKSA--YETLQHMVALAMMGKLYINRTSEGRL-----RSSRLDIPIPL-- 283
             S+T  L+ L +A  +E ++ + A  M      N  +   L     R   ++  I +  
Sbjct: 281 TVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLE 340

Query: 284 ----NALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIV 339
               +       L     + I   GR  +   A Q +  M S G  P + +Y   ++ + 
Sbjct: 341 QMSGHGCAANTTLCNIVINTICKQGRVDD---AFQFLNNMGSYGCSPDTISYTTVLKGLC 397

Query: 340 SDRGLRNGMEVLKIMQQNNLKPQDSTIAT-LSVECSKALELDLAEALLDQISR--C-TNP 395
                 +  E+LK M + N  P + T  T + + C K L ++ A  L++Q+S   C  N 
Sbjct: 398 RAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGL-IEQATMLIEQMSEHGCEVNI 456

Query: 396 KPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQV 455
             ++A +       + + A+++F  M    +P+  TY  L +   N              
Sbjct: 457 VTYNALVNGFCVQGRVDSALELFYSM--PCKPNTITYTTLLTGLCN-------------- 500

Query: 456 DSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTV 515
             A+R++A                         A  ++ E++Q  C         T+N +
Sbjct: 501 --AERLDA-------------------------AAELLAEMLQKDCAPNVV----TFNVL 529

Query: 516 LHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGF 575
           +    +      A+E+ +QM   G  PN  TYN ++D  +     + A  L+  +V +G 
Sbjct: 530 VSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGV 589

Query: 576 YPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEF 635
            P  +TY+++I +L      +EA+ +  +V   G+    ++YN IL   C++   D    
Sbjct: 590 SPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAID 649

Query: 636 IIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDFE 695
               M  N   P+  T   +  G  N  F     + L+ L  R +  + + LEE R  F 
Sbjct: 650 FFAYMVSNGCMPNELTYITLIEGLANEDFLKETRDLLRELCSRGVLNK-NLLEEWRPKFS 708

Query: 696 D 696
           +
Sbjct: 709 N 709


>gi|356519375|ref|XP_003528348.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 589

 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 90/398 (22%), Positives = 165/398 (41%), Gaps = 27/398 (6%)

Query: 281 IPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVS 340
           + +N LP  K     F  ++    + ++      L+  + SLG++P  +T    I  +  
Sbjct: 63  VVMNPLPREKDFTKLFGIIV----KMKHYATTISLIKHIYSLGIKPDVYTLTIIINCLCH 118

Query: 341 DRGLRNGMEVLKIMQQNNLKPQDSTIATL----SVECSKALELDLAEALLDQISRCTNPK 396
                 G  VL +M +  + P   T ATL      E + A     A++L D +   +N  
Sbjct: 119 LNHTVFGFSVLGVMFKIGVDPTVVTFATLINGLCAEGNVARAARFADSLED-MGHQSNSY 177

Query: 397 PFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRT---YELLFSLFGNVNAPYEEGNMFS 453
            + A +           AI    K++ +   D+     Y  +           E  N+FS
Sbjct: 178 TYGAIINGLCKAGDTSGAILYLEKIKGR-NCDLDVVIAYSTIMDSLCKDGMVCEALNLFS 236

Query: 454 QVDSAKRINAIEMDM-ARNNIQHSHISMKNLLKALGAEG-MIRELIQYFCDSKTPLGTPT 511
            + S      I+ D+ A N++ H   +     +A    G M+R+ I        P    T
Sbjct: 237 GMTS----KGIQPDLVAYNSLIHGLCNFGRWKEATTLLGNMMRKGIM-------P-NVQT 284

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           +N ++ +  +     RA  I   M   G+ P+  TYN +I    ++     A  +  +M+
Sbjct: 285 FNVLVDNFCKDGMISRAKTIMGFMVHVGVEPDVVTYNSVISGHCLLSQMGDAVKVFELMI 344

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
             GF P  +TY++LI       + ++AL LL  +   G+  DV+ ++T++   C+ G+ +
Sbjct: 345 HKGFLPNLVTYSSLIHGWCKTKNINKALFLLGEMVNSGLNPDVVTWSTLIGGFCKAGKPE 404

Query: 632 VIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAM 669
             + +   MH++   P+  TC  +  G   C FH+ A+
Sbjct: 405 AAKELFCTMHEHDQHPNLQTCAIILDGLFKCQFHSEAI 442



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 93/479 (19%), Positives = 191/479 (39%), Gaps = 80/479 (16%)

Query: 220 IKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDI 279
           +KHY+ +I SL K ++S     D+        + + + +    ++N T  G    S L +
Sbjct: 84  MKHYATTI-SLIKHIYSLGIKPDV--------YTLTIIINCLCHLNHTVFGF---SVLGV 131

Query: 280 PIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIV 339
              +   P +     +F+ +I+      N   A +    ++ +G Q +S+TY   I  + 
Sbjct: 132 MFKIGVDPTVV----TFATLINGLCAEGNVARAARFADSLEDMGHQSNSYTYGAIINGLC 187

Query: 340 SDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVE---CSKALELDLAEALLDQISRCTNPK 396
                   +  L+ ++  N    D  IA  ++    C   +  +         S+   P 
Sbjct: 188 KAGDTSGAILYLEKIKGRNCD-LDVVIAYSTIMDSLCKDGMVCEALNLFSGMTSKGIQPD 246

Query: 397 --PFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFS 453
              +++ +       + + A  +   M R+ + P+++T+ +L   F       ++G    
Sbjct: 247 LVAYNSLIHGLCNFGRWKEATTLLGNMMRKGIMPNVQTFNVLVDNF------CKDG---- 296

Query: 454 QVDSAKRINA------IEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPL 507
            +  AK I        +E D+   N   S IS   LL  +G    + EL+ +      P 
Sbjct: 297 MISRAKTIMGFMVHVGVEPDVVTYN---SVISGHCLLSQMGDAVKVFELMIH--KGFLP- 350

Query: 508 GTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID--------------- 552
              TY++++H   + +  ++A+ +  +M   G+ P+  T++ +I                
Sbjct: 351 NLVTYSSLIHGWCKTKNINKALFLLGEMVNSGLNPDVVTWSTLIGGFCKAGKPEAAKELF 410

Query: 553 -------------CCSII-----RC-FKS-ASALVSMMVRDGFYPQTMTYTALIKILLDY 592
                         C+II     +C F S A +L   M +       + Y  ++  +  +
Sbjct: 411 CTMHEHDQHPNLQTCAIILDGLFKCQFHSEAISLFREMEKMNLELNVVIYNIVLDGMCSF 470

Query: 593 GDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
           G  ++A  L   +  +GI  DV+ Y T++K  C++G +D  E ++ +M +N   P+  T
Sbjct: 471 GKLNDAQELFSCLPSKGIKIDVVAYTTMIKGLCKEGLLDDAENLLMKMEENGCLPNEFT 529



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 70/368 (19%), Positives = 134/368 (36%), Gaps = 21/368 (5%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A  L   M S G+QP    Y+  I  + +    +    +L  M +  + P   T   L  
Sbjct: 231 ALNLFSGMTSKGIQPDLVAYNSLIHGLCNFGRWKEATTLLGNMMRKGIMPNVQTFNVLVD 290

Query: 372 ECSKALELDLAEALLD---QISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRP 427
              K   +  A+ ++     +    +   +++ ++    + +   A+K+F  M  K   P
Sbjct: 291 NFCKDGMISRAKTIMGFMVHVGVEPDVVTYNSVISGHCLLSQMGDAVKVFELMIHKGFLP 350

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL 487
           ++ TY  L              + + +  +  +   +  +M  + +    ++   L+   
Sbjct: 351 NLVTYSSLI-------------HGWCKTKNINKALFLLGEMVNSGLNPDVVTWSTLIGGF 397

Query: 488 GAEGMIRELIQYFCDSKTPLGTPTYNT---VLHSLVEAQESHRAMEIFKQMKTCGIPPNA 544
              G      + FC        P   T   +L  L + Q    A+ +F++M+   +  N 
Sbjct: 398 CKAGKPEAAKELFCTMHEHDQHPNLQTCAIILDGLFKCQFHSEAISLFREMEKMNLELNV 457

Query: 545 ATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDL 604
             YNI++D          A  L S +   G     + YT +IK L   G  D+A NLL  
Sbjct: 458 VIYNIVLDGMCSFGKLNDAQELFSCLPSKGIKIDVVAYTTMIKGLCKEGLLDDAENLLMK 517

Query: 605 VSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGF 664
           +   G   +   YN  ++   ++  I      +  M    +  D +T   + S Y +   
Sbjct: 518 MEENGCLPNEFTYNVFVRGLLQRYDISRSTKYLLLMKGKGLSADATTTELLIS-YFSANK 576

Query: 665 HNSAMEAL 672
            NSA+   
Sbjct: 577 ENSALHVF 584



 Score = 39.7 bits (91), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 41/189 (21%), Positives = 73/189 (38%), Gaps = 9/189 (4%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID--CC--SIIRCFKSASAL 566
           T   +++ L     +     +   M   G+ P   T+  +I+  C   ++ R  + A +L
Sbjct: 108 TLTIIINCLCHLNHTVFGFSVLGVMFKIGVDPTVVTFATLINGLCAEGNVARAARFADSL 167

Query: 567 VSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLL-YNTILKKAC 625
             M    G    + TY A+I  L   GD   A+  L+ +       DV++ Y+TI+   C
Sbjct: 168 EDM----GHQSNSYTYGAIINGLCKAGDTSGAILYLEKIKGRNCDLDVVIAYSTIMDSLC 223

Query: 626 EKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVS 685
           + G +     +   M    +QPD    + +  G  N G    A   L  +  + +   V 
Sbjct: 224 KDGMVCEALNLFSGMTSKGIQPDLVAYNSLIHGLCNFGRWKEATTLLGNMMRKGIMPNVQ 283

Query: 686 TLEEKRSDF 694
           T      +F
Sbjct: 284 TFNVLVDNF 292


>gi|255548994|ref|XP_002515553.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545497|gb|EEF47002.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 927

 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 122/608 (20%), Positives = 225/608 (37%), Gaps = 119/608 (19%)

Query: 114 EEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHS 173
           + + + L+   Y +++QA CK   +E A  L+  + ++ G  P    + S +GAC K  +
Sbjct: 271 KSRGVKLDAAAYSIVIQAFCKNLDVELACGLLKDMRDK-GWVPSEGTFTSVIGACVKQGN 329

Query: 174 MVHA------------------------NLC-----------LDLMDSRMVGKNEVTYTE 198
           MV A                          C            D M+      N VTY  
Sbjct: 330 MVEALRLKDEMVSCGVQMNVVVATTLVKGYCKQDKLVSALEFFDKMNENGPSPNRVTYAV 389

Query: 199 LLKLAVWQKNLSAVHEIWEDYI-KHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALA 257
           L++      N++  ++++     K+   ++F +   +  F ++   + A +     VA  
Sbjct: 390 LIEWCCKNGNMAKAYDLYTQMKNKNICPTVFIVNSLIRGFLKVESREEASKLFDEAVACD 449

Query: 258 MMGKLYINR-----TSEGRL-RSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGL 311
           +      N        EG++  ++ L   +    L   KV   S++ +I    R  N  +
Sbjct: 450 IANIFTYNSLLSWLCKEGKMSEATTLWQKMLDKGLAPTKV---SYNSMILGHCRQGNLDM 506

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNG-----MEVLKIMQQNNLKPQDSTI 366
           A  +   M   GL+P+  TY     +I+ D   +NG       V   M   N+ P D T 
Sbjct: 507 AASVFSDMLDCGLKPNVITY-----SILMDGYFKNGDTEYAFYVFDRMVDENIVPSDFTY 561

Query: 367 ATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDT----MD------KPERAIK 416
                   K      A+ +L +            F+  C T    MD          A+ 
Sbjct: 562 NIKINGLCKVGRTSEAQDMLKKFVE-------KGFVPVCLTYNSIMDGFIKEGSVSSALT 614

Query: 417 IFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQH 475
            + +M    + P++ TY  L + F                              +NN   
Sbjct: 615 AYREMCESGVSPNVITYTTLINGF-----------------------------CKNNNTD 645

Query: 476 SHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQM 535
             + M+N ++  G E                L    Y  ++    + Q+   A  +F ++
Sbjct: 646 LALKMRNEMRNKGLE----------------LDIAAYGALIDGFCKKQDIETASWLFSEL 689

Query: 536 KTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDF 595
              G+ PN+  YN +I     +   ++A  L   M+ +G      TYT LI  LL  G  
Sbjct: 690 LDGGLSPNSVIYNSLISGYRNLNNMEAALNLQKRMLGEGISCDLQTYTTLIDGLLKEGRL 749

Query: 596 DEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFV 655
             AL+L   +S +GI  D+++Y  ++   C KG+++  + I+ +M ++ + P+    + +
Sbjct: 750 VLALDLYSEMSAKGIIPDIIIYTVLINGLCGKGQLENAQKILAEMERDSITPNVPIYNAL 809

Query: 656 FSGYVNCG 663
            +G+   G
Sbjct: 810 IAGHFKAG 817



 Score = 50.1 bits (118), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 73/142 (51%), Gaps = 2/142 (1%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           T + ++ + ++      A + F + K+ G+  +AA Y+I+I         + A  L+  M
Sbjct: 246 TVHIMMRANLKDNNEEEAKKFFLEAKSRGVKLDAAAYSIVIQAFCKNLDVELACGLLKDM 305

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR- 629
              G+ P   T+T++I   +  G+  EAL L D +   G+  +V++  T++K  C++ + 
Sbjct: 306 RDKGWVPSEGTFTSVIGACVKQGNMVEALRLKDEMVSCGVQMNVVVATTLVKGYCKQDKL 365

Query: 630 IDVIEFIIEQMHQNKVQPDPST 651
           +  +EF  ++M++N   P+  T
Sbjct: 366 VSALEF-FDKMNENGPSPNRVT 386


>gi|356561677|ref|XP_003549106.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Glycine max]
          Length = 511

 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 81/356 (22%), Positives = 150/356 (42%), Gaps = 22/356 (6%)

Query: 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
           + S+  +I+   +T  +    +L+ +++   ++P    Y+  I ++  ++ L +  +V  
Sbjct: 162 QVSYGTLINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYS 221

Query: 353 IMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQIS-RCTNPKPFSAFLAACDTMDK- 410
            M    + P   T  TL         L  A +LL+++  +  NP     F    D + K 
Sbjct: 222 EMIVKGISPDVVTYTTLIHGFCIMGHLKEAFSLLNEMKLKNINPN-VCTFNILIDALSKE 280

Query: 411 ---PERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMD 467
               E  I +   M+  ++PD+ TY  L              + +  VD  K    +   
Sbjct: 281 GKMKEAKILLAVMMKACIKPDVFTYNSLI-------------DGYFLVDEVKHAKYVFYS 327

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQE 524
           MA+  +        N++  L    M+ E +  F + K     P   TYN+++  L +   
Sbjct: 328 MAQRGVTPDVQCYTNMINGLCKTKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHH 387

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
             RA+ + K+MK  GI P+  +Y I++D        + A  +   ++  G++     YT 
Sbjct: 388 LERAIALCKRMKEQGIQPDVYSYTILLDGLCKSGRLEDAKEIFQRLLAKGYHLNVHAYTV 447

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQM 640
           LI  L   G FDEAL+L   +  +G   D + ++ I++   EK   D  E I+ +M
Sbjct: 448 LINRLCKAGFFDEALDLKSKMEDKGCMPDAVTFDIIIRALFEKDENDKAEKILREM 503



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 73/145 (50%)

Query: 504 KTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSA 563
           + P  T  +N +L SLV  +     + +FKQ +  GI P+  T +I+I+C         A
Sbjct: 52  RPPPPTFHFNNILSSLVNNKHYPTVISLFKQFEPNGITPDLCTLSILINCFCHQAHITLA 111

Query: 564 SALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKK 623
            ++ + +++ GF+P  +T   LIK L   G+  +AL   D +  +G   D + Y T++  
Sbjct: 112 FSVFANILKRGFHPNAITLNTLIKGLCFRGEIKKALYFHDQLVAQGFQLDQVSYGTLING 171

Query: 624 ACEKGRIDVIEFIIEQMHQNKVQPD 648
            C+ G    +  ++ ++  + V+PD
Sbjct: 172 LCKTGETKAVARLLRKLEGHSVKPD 196



 Score = 66.6 bits (161), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/197 (22%), Positives = 93/197 (47%), Gaps = 5/197 (2%)

Query: 467 DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLG----TPTYNTVLHSLVEA 522
           ++ +     + I++  L+K L   G I++ + YF D     G      +Y T+++ L + 
Sbjct: 117 NILKRGFHPNAITLNTLIKGLCFRGEIKKAL-YFHDQLVAQGFQLDQVSYGTLINGLCKT 175

Query: 523 QESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTY 582
            E+     + ++++   + P+   YN +I+     +    A  + S M+  G  P  +TY
Sbjct: 176 GETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPDVVTY 235

Query: 583 TALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642
           T LI      G   EA +LL+ + L+ I  +V  +N ++    ++G++   + ++  M +
Sbjct: 236 TTLIHGFCIMGHLKEAFSLLNEMKLKNINPNVCTFNILIDALSKEGKMKEAKILLAVMMK 295

Query: 643 NKVQPDPSTCHFVFSGY 659
             ++PD  T + +  GY
Sbjct: 296 ACIKPDVFTYNSLIDGY 312



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 76/175 (43%)

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           YNT+++SL + +    A +++ +M   GI P+  TY  +I    I+   K A +L++ M 
Sbjct: 200 YNTIINSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHGFCIMGHLKEAFSLLNEMK 259

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
                P   T+  LI  L   G   EA  LL ++    I  DV  YN+++        + 
Sbjct: 260 LKNINPNVCTFNILIDALSKEGKMKEAKILLAVMMKACIKPDVFTYNSLIDGYFLVDEVK 319

Query: 632 VIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
             +++   M Q  V PD      + +G       + AM   + +  + +  ++ T
Sbjct: 320 HAKYVFYSMAQRGVTPDVQCYTNMINGLCKTKMVDEAMSLFEEMKHKNMIPDIVT 374


>gi|125527955|gb|EAY76069.1| hypothetical protein OsI_03997 [Oryza sativa Indica Group]
          Length = 684

 Score = 83.2 bits (204), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 143/661 (21%), Positives = 253/661 (38%), Gaps = 87/661 (13%)

Query: 58  QIVDALCRGERSRASHLLLNLGHAHHSLGADDFFH----ILNYCARSPDPLFVMETWRMM 113
           +++  LCR  R R S     L  A  S  A D F     +  YC        +    R++
Sbjct: 83  KLIRNLCR--RGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQ----LDAARRLI 136

Query: 114 EEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHS 173
               +  +   Y  +++ LC  G + EA +L+  +  R G  P +  Y   L A  K   
Sbjct: 137 ASMPVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHR-GCQPSVVTYTVLLEAVCKSTG 195

Query: 174 MVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKF 233
              A   LD M ++    N VTY  ++     +  +    E          LS +  +  
Sbjct: 196 FGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLN------RLSSYGFQPD 249

Query: 234 VWSFTR-LRDLKSA--YETLQHMVALAMMGKLYINRTSEGRL-----RSSRLDIPIPL-- 283
             S+T  L+ L +A  +E ++ + A  M      N  +   L     R   ++  I +  
Sbjct: 250 TVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLE 309

Query: 284 ----NALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIV 339
               +       L     + I   GR  +   A Q +  M S G  P + +Y   ++ + 
Sbjct: 310 QMSGHGCAANTTLCNIVINTICKQGRVDD---AFQFLNNMGSYGCSPDTISYTTVLKGLC 366

Query: 340 SDRGLRNGMEVLKIMQQNNLKPQDSTIAT-LSVECSKALELDLAEALLDQISR--C-TNP 395
                 +  E+LK M + N  P + T  T + + C K L ++ A  L++Q+S   C  N 
Sbjct: 367 RAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGL-IEQATMLIEQMSEHGCEVNI 425

Query: 396 KPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQV 455
             ++A +       + + A+++F  M    +P+  TY  L +   N              
Sbjct: 426 VTYNALVNGFCVQGRVDSALELFYSM--PCKPNTITYTTLLTGLCN-------------- 469

Query: 456 DSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTV 515
             A+R++A                         A  ++ E++Q  C         T+N +
Sbjct: 470 --AERLDA-------------------------AAELLAEMLQKDCAPNVV----TFNVL 498

Query: 516 LHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGF 575
           +    +      A+E+ +QM   G  PN  TYN ++D  +     + A  L+  +V +G 
Sbjct: 499 VSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITNDCNSEEALELLHGLVSNGV 558

Query: 576 YPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEF 635
            P  +TY+++I +L      +EA+ +  +V   G+    ++YN IL   C++   D    
Sbjct: 559 SPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAID 618

Query: 636 IIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDFE 695
               M  N   P+  T   +  G  N  F     + L+ L  R +  + + LEE R  F 
Sbjct: 619 FFAYMVSNGCMPNELTYITLIEGLANEDFLKETRDLLRELCSRGVLNK-NLLEEWRPKFS 677

Query: 696 D 696
           +
Sbjct: 678 N 678


>gi|255575351|ref|XP_002528578.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531974|gb|EEF33786.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 817

 Score = 83.2 bits (204), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 95/436 (21%), Positives = 164/436 (37%), Gaps = 68/436 (15%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           + ++  I A  + QN  +  + +  M+  G++P+   Y+  I  +  ++ +R+  ++   
Sbjct: 177 FMYAKAIQAAVKLQNLKMGMEFLDSMRKRGVRPNVFIYNVLIGGLCREKRIRDAEKMFDE 236

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI---SRCTNPKPFSAFLAACDTMDK 410
           M   NL     T  TL     K  ELD A  + +++   S   N   F++ L+    M K
Sbjct: 237 MCNINLVGSIVTYNTLIDGYCKVGELDAAFKMRERMKEKSVAPNIITFNSLLSGLCKMRK 296

Query: 411 PERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQ-VDSAKRINAIEMDM 468
            + A  +  +M      PD  TY +LF      +       ++ Q  +   RIN     +
Sbjct: 297 MKEARSLLKEMEVNGFMPDGYTYSILFDGLLRCDDGNGAMELYEQATEKGIRINNYTGSI 356

Query: 469 ARNNI--QHSHISMKNLLKALGAEGMIRE------------------------------- 495
             N +  Q      + +LK     G++ +                               
Sbjct: 357 LLNGLCKQGKVEKAEEILKKFTENGLVADEVIYNTFVNGYCRIGDMNKAILTIERMESFG 416

Query: 496 ----------LIQYFCDSK-----------------TPLGTPTYNTVLHSLVEAQESHRA 528
                     LI  FCD K                 TP    TYNT++    +     R 
Sbjct: 417 LRPNSITFNSLIDKFCDMKEMDKAEEWVKKMAEKGVTP-SVETYNTLIDGYGKLCTFDRC 475

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDC-CSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
            +I +QM+  G+ PN  +Y  +I+C C   +  ++   L  M+ R G  P    Y  LI 
Sbjct: 476 FQILEQMEEIGVKPNVVSYGSLINCLCKDGKILEAEIVLRDMICR-GVLPNAQVYNMLID 534

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
                G   +AL   D +    I   ++ YN ++   C+KG++   E  + Q+  +   P
Sbjct: 535 GSCMVGKVKDALRFFDEMMRSEISPTLVTYNVLIDGLCKKGKLTEAEDFLTQITSSGHSP 594

Query: 648 DPSTCHFVFSGYVNCG 663
           D  T + + SGY N G
Sbjct: 595 DVITYNSLISGYANAG 610



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 96/480 (20%), Positives = 187/480 (38%), Gaps = 35/480 (7%)

Query: 196 YTELLKLAVWQKNLSAVHEIWEDYIKH-YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMV 254
           Y + ++ AV  +NL    E  +   K     ++F     +    R + ++ A +    M 
Sbjct: 179 YAKAIQAAVKLQNLKMGMEFLDSMRKRGVRPNVFIYNVLIGGLCREKRIRDAEKMFDEMC 238

Query: 255 ALAMMGKLYI-NRTSEGRLRSSRLDIPIPLNALPVMKVLR---WSFSDVIHACGRTQNSG 310
            + ++G +   N   +G  +   LD    +      K +     +F+ ++    + +   
Sbjct: 239 NINLVGSIVTYNTLIDGYCKVGELDAAFKMRERMKEKSVAPNIITFNSLLSGLCKMRKMK 298

Query: 311 LAEQLMLQMQSLGLQPSSHTY----DGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTI 366
            A  L+ +M+  G  P  +TY    DG +R    D G    ME+ +   +  ++  + T 
Sbjct: 299 EARSLLKEMEVNGFMPDGYTYSILFDGLLRC---DDG-NGAMELYEQATEKGIRINNYTG 354

Query: 367 ATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ 423
           + L     K  +++ AE +L + +      +   ++ F+     +    +AI    +M  
Sbjct: 355 SILLNGLCKQGKVEKAEEILKKFTENGLVADEVIYNTFVNGYCRIGDMNKAILTIERMES 414

Query: 424 -KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKN 482
             LRP+  T+  L   F ++           ++D A+        MA   +  S  +   
Sbjct: 415 FGLRPNSITFNSLIDKFCDM----------KEMDKAEEWVK---KMAEKGVTPSVETYNT 461

Query: 483 LLKALGAEGMIRELIQYFCDSKTPLGTP----TYNTVLHSLVEAQESHRAMEIFKQMKTC 538
           L+   G         Q   +    +G      +Y ++++ L +  +   A  + + M   
Sbjct: 462 LIDGYGKLCTFDRCFQIL-EQMEEIGVKPNVVSYGSLINCLCKDGKILEAEIVLRDMICR 520

Query: 539 GIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEA 598
           G+ PNA  YN++ID   ++   K A      M+R    P  +TY  LI  L   G   EA
Sbjct: 521 GVLPNAQVYNMLIDGSCMVGKVKDALRFFDEMMRSEISPTLVTYNVLIDGLCKKGKLTEA 580

Query: 599 LNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
            + L  ++  G   DV+ YN+++      G +     + E M    ++P   T H + SG
Sbjct: 581 EDFLTQITSSGHSPDVITYNSLISGYANAGNVSKCLGLYETMKNLGIKPTVRTYHPLISG 640



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 125/618 (20%), Positives = 246/618 (39%), Gaps = 73/618 (11%)

Query: 59  IVDALCRGERSRASHLLLNLGHAHHSLGADDFFHIL--NYCARSP-DPLFVMETWRMMEE 115
           ++  LCR +R R +  + +     + +G+   ++ L   YC     D  F M     M+E
Sbjct: 217 LIGGLCREKRIRDAEKMFDEMCNINLVGSIVTYNTLIDGYCKVGELDAAFKMR--ERMKE 274

Query: 116 KEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMV 175
           K +  N   +  ++  LCK   ++EA +L+  + E  G  P    Y+       +     
Sbjct: 275 KSVAPNIITFNSLLSGLCKMRKMKEARSLLKEM-EVNGFMPDGYTYSILFDGLLRCDDGN 333

Query: 176 HANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLS---IFSLRK 232
            A    +    + +  N  T + LL     Q  +    EI + + ++  ++   I++   
Sbjct: 334 GAMELYEQATEKGIRINNYTGSILLNGLCKQGKVEKAEEILKKFTENGLVADEVIYN--T 391

Query: 233 FVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVL 292
           FV  + R+ D+  A  T++ M +                LR + +               
Sbjct: 392 FVNGYCRIGDMNKAILTIERMESFG--------------LRPNSI--------------- 422

Query: 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTY----DGFIRAIVSDRGLRNGM 348
             +F+ +I      +    AE+ + +M   G+ PS  TY    DG+ +    DR      
Sbjct: 423 --TFNSLIDKFCDMKEMDKAEEWVKKMAEKGVTPSVETYNTLIDGYGKLCTFDRCF---- 476

Query: 349 EVLKIMQQNNLKPQDSTIATL-SVECSKALELDLAEALLDQISRCT--NPKPFSAFLAAC 405
           ++L+ M++  +KP   +  +L +  C     L+    L D I R    N + ++  +   
Sbjct: 477 QILEQMEEIGVKPNVVSYGSLINCLCKDGKILEAEIVLRDMICRGVLPNAQVYNMLIDGS 536

Query: 406 DTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAI 464
             + K + A++ F +M R ++ P + TY +L           E  +  +Q+ S+     +
Sbjct: 537 CMVGKVKDALRFFDEMMRSEISPTLVTYNVLIDGLCKKGKLTEAEDFLTQITSSGHSPDV 596

Query: 465 EMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLG-TPTYNTVLHSLVE-- 521
              +  N++   + +  N+ K LG             ++   LG  PT  T  H L+   
Sbjct: 597 ---ITYNSLISGYANAGNVSKCLG-----------LYETMKNLGIKPTVRT-YHPLISGC 641

Query: 522 AQESHRAME-IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTM 580
           ++E    +E ++ +M    + P+   YN MI C + I   + A +L   M+  G +P  M
Sbjct: 642 SKEGIELVEKLYNEMLQMNLLPDRVVYNAMIHCYAEIGNTQKAYSLHQGMLDQGIHPDKM 701

Query: 581 TYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQM 640
           TY +LI      G      +L++ +  + +      Y+ ++K  C+            +M
Sbjct: 702 TYNSLILGHFREGKLSNIKDLVNNMKAKELAPKADTYDILVKGHCDLKDFSGAYVWYREM 761

Query: 641 HQNKVQPDPSTCHFVFSG 658
            +N   P+ S C+ + +G
Sbjct: 762 VENNFLPNASICNELTAG 779



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 107/226 (47%), Gaps = 6/226 (2%)

Query: 483 LLKALGAEGMIRELIQYF---CDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCG 539
           L+  L  E  IR+  + F   C+        TYNT++    +  E   A ++ ++MK   
Sbjct: 217 LIGGLCREKRIRDAEKMFDEMCNINLVGSIVTYNTLIDGYCKVGELDAAFKMRERMKEKS 276

Query: 540 IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEAL 599
           + PN  T+N ++     +R  K A +L+  M  +GF P   TY+ L   LL   D + A+
Sbjct: 277 VAPNIITFNSLLSGLCKMRKMKEARSLLKEMEVNGFMPDGYTYSILFDGLLRCDDGNGAM 336

Query: 600 NLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
            L +  + +GI  +    + +L   C++G+++  E I+++  +N +  D    +   +GY
Sbjct: 337 ELYEQATEKGIRINNYTGSILLNGLCKQGKVEKAEEILKKFTENGLVADEVIYNTFVNGY 396

Query: 660 VNCGFHNSA---MEALQVLSMRMLCEEVSTLEEKRSDFEDLILAED 702
              G  N A   +E ++   +R      ++L +K  D +++  AE+
Sbjct: 397 CRIGDMNKAILTIERMESFGLRPNSITFNSLIDKFCDMKEMDKAEE 442



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 104/561 (18%), Positives = 211/561 (37%), Gaps = 55/561 (9%)

Query: 59  IVDALCRGERSRASHLLLNLGHAHHSLGADDFFHIL-NYCARSPDPLFVMETWRMMEEKE 117
           ++  LC+  + + +  LL     +  +     + IL +   R  D    ME +    EK 
Sbjct: 287 LLSGLCKMRKMKEARSLLKEMEVNGFMPDGYTYSILFDGLLRCDDGNGAMELYEQATEKG 346

Query: 118 IGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHA 177
           I +NN    +++  LCK G +E+A  ++    E  G+     +YN+F+    ++  M  A
Sbjct: 347 IRINNYTGSILLNGLCKQGKVEKAEEILKKFTEN-GLVADEVIYNTFVNGYCRIGDMNKA 405

Query: 178 NLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI--KHYSLSIFSLRKFVW 235
            L ++ M+S  +  N +T+  L+      K +    E W   +  K  + S+ +    + 
Sbjct: 406 ILTIERMESFGLRPNSITFNSLIDKFCDMKEMDKAEE-WVKKMAEKGVTPSVETYNTLID 464

Query: 236 SFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWS 295
            + +L      ++ L+ M                        +I +  N +        S
Sbjct: 465 GYGKLCTFDRCFQILEQME-----------------------EIGVKPNVV--------S 493

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           +  +I+   +      AE ++  M   G+ P++  Y+  I        +++ +     M 
Sbjct: 494 YGSLINCLCKDGKILEAEIVLRDMICRGVLPNAQVYNMLIDGSCMVGKVKDALRFFDEMM 553

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPK---PFSAFLAACDTMDKPE 412
           ++ + P   T   L     K  +L  AE  L QI+   +      +++ ++         
Sbjct: 554 RSEISPTLVTYNVLIDGLCKKGKLTEAEDFLTQITSSGHSPDVITYNSLISGYANAGNVS 613

Query: 413 RAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQ--VDSAKRINAIEMDMA 469
           + + ++  M+   ++P +RTY  L S         +EG    +   +   ++N +   + 
Sbjct: 614 KCLGLYETMKNLGIKPTVRTYHPLIS------GCSKEGIELVEKLYNEMLQMNLLPDRVV 667

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAM 529
            N + H +  + N  KA         L Q   D        TYN+++       +     
Sbjct: 668 YNAMIHCYAEIGNTQKAYS-------LHQGMLDQGIHPDKMTYNSLILGHFREGKLSNIK 720

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
           ++   MK   + P A TY+I++     ++ F  A      MV + F P       L   L
Sbjct: 721 DLVNNMKAKELAPKADTYDILVKGHCDLKDFSGAYVWYREMVENNFLPNASICNELTAGL 780

Query: 590 LDYGDFDEALNLLDLVSLEGI 610
              G   E   +   ++++GI
Sbjct: 781 EQEGRLQEVQVICSEMNVKGI 801



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/178 (22%), Positives = 81/178 (45%), Gaps = 4/178 (2%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASA--LVS 568
           T+N++L  L + ++   A  + K+M+  G  P+  TY+I+ D   ++RC     A  L  
Sbjct: 283 TFNSLLSGLCKMRKMKEARSLLKEMEVNGFMPDGYTYSILFD--GLLRCDDGNGAMELYE 340

Query: 569 MMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
                G      T + L+  L   G  ++A  +L   +  G+  D ++YNT +   C  G
Sbjct: 341 QATEKGIRINNYTGSILLNGLCKQGKVEKAEEILKKFTENGLVADEVIYNTFVNGYCRIG 400

Query: 629 RIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
            ++     IE+M    ++P+  T + +   + +    + A E ++ ++ + +   V T
Sbjct: 401 DMNKAILTIERMESFGLRPNSITFNSLIDKFCDMKEMDKAEEWVKKMAEKGVTPSVET 458



 Score = 55.1 bits (131), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 105/558 (18%), Positives = 194/558 (34%), Gaps = 92/558 (16%)

Query: 151 RYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLS 210
           + G+ P + +YN  +G   +   +  A    D M +  +  + VTY  L+        L 
Sbjct: 204 KRGVRPNVFIYNVLIGGLCREKRIRDAEKMFDEMCNINLVGSIVTYNTLIDGYCKVGELD 263

Query: 211 AVHEIWEDYI-KHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRT-S 268
           A  ++ E    K  + +I +    +    ++R +K A   L+ M     M   Y      
Sbjct: 264 AAFKMRERMKEKSVAPNIITFNSLLSGLCKMRKMKEARSLLKEMEVNGFMPDGYTYSILF 323

Query: 269 EGRLRSSRLDIPIPLNALPVMKVLR---WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQ 325
           +G LR    +  + L      K +R   ++ S +++   +      AE+++ +    GL 
Sbjct: 324 DGLLRCDDGNGAMELYEQATEKGIRINNYTGSILLNGLCKQGKVEKAEEILKKFTENGLV 383

Query: 326 PSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEAL 385
                Y+ F+        +   +  ++ M+   L+P   T                  +L
Sbjct: 384 ADEVIYNTFVNGYCRIGDMNKAILTIERMESFGLRPNSITF----------------NSL 427

Query: 386 LDQISRCTNPKPFSAFLAACD--TMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVN 443
           +D+                CD   MDK E  +K  A+  + + P + TY  L   +G   
Sbjct: 428 IDKF---------------CDMKEMDKAEEWVKKMAE--KGVTPSVETYNTLIDGYG--- 467

Query: 444 APYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRE----LIQY 499
                     ++ +  R   I   M    ++ + +S  +L+  L  +G I E    L   
Sbjct: 468 ----------KLCTFDRCFQILEQMEEIGVKPNVVSYGSLINCLCKDGKILEAEIVLRDM 517

Query: 500 FCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRC 559
            C    P     YN ++       +   A+  F +M    I P   TYN++ID       
Sbjct: 518 ICRGVLP-NAQVYNMLIDGSCMVGKVKDALRFFDEMMRSEISPTLVTYNVLIDGLCKKGK 576

Query: 560 FKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLV-------------- 605
              A   ++ +   G  P  +TY +LI    + G+  + L L + +              
Sbjct: 577 LTEAEDFLTQITSSGHSPDVITYNSLISGYANAGNVSKCLGLYETMKNLGIKPTVRTYHP 636

Query: 606 -----SLEGIP---------------HDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
                S EGI                 D ++YN ++    E G       + + M    +
Sbjct: 637 LISGCSKEGIELVEKLYNEMLQMNLLPDRVVYNAMIHCYAEIGNTQKAYSLHQGMLDQGI 696

Query: 646 QPDPSTCHFVFSGYVNCG 663
            PD  T + +  G+   G
Sbjct: 697 HPDKMTYNSLILGHFREG 714


>gi|302784788|ref|XP_002974166.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
 gi|300158498|gb|EFJ25121.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
          Length = 647

 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 85/377 (22%), Positives = 148/377 (39%), Gaps = 19/377 (5%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +F+ VI+   R +    A  ++ +    G +P   TY+ FI  +     + +  ++LK M
Sbjct: 43  AFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQLLKKM 102

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKP--- 411
            +    P   T   L     KA  LD A A+L+Q+    N      +    D + K    
Sbjct: 103 DEKKCLPTTVTYTALVDGLLKAGRLDEAMAILEQMVEKGNSPTLKTYTVVIDGLSKAGRV 162

Query: 412 ERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           E A +IF  M     RPD   Y  L S    +    E     +Q+        +E D+  
Sbjct: 163 EEARRIFVDMLGNGCRPDAFVYTALISGLAKIGKLDEALVYLNQMVENGCARGVEPDVVI 222

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYF--CDSKTPLGTPTYNTVLHSLVEAQESHRA 528
           +N+         +++ L A G + + + YF   D    L   T+N ++ +L +A+ +  A
Sbjct: 223 HNL---------VIRQLCASGNLEDALAYFDELDDSLDLTHFTFNPLVAALCKAERTEEA 273

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSM--MVRDGFYPQTMTYTALI 586
           +   K+M      P   TY  ++D    ++  +   AL+ +   V  GF P  +TYT++I
Sbjct: 274 IAFVKKMSERRCFPTLFTYTSLVD--GFLKLGRLDEALLQLKEAVERGFIPDAVTYTSII 331

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
             L   G  +E       +   G   D + Y  ++    +   I     +  QM Q+   
Sbjct: 332 DGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTV 391

Query: 647 PDPSTCHFVFSGYVNCG 663
               T + +  G    G
Sbjct: 392 VSTVTYNIILDGLCKAG 408



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 86/402 (21%), Positives = 168/402 (41%), Gaps = 38/402 (9%)

Query: 269 EGRLRSSRLDIPIPL-------NALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQS 321
           +G L++ RLD  + +          P +K    +++ VI    +      A ++ + M  
Sbjct: 119 DGLLKAGRLDEAMAILEQMVEKGNSPTLK----TYTVVIDGLSKAGRVEEARRIFVDMLG 174

Query: 322 LGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNN----LKPQDSTIATLSVE--CSK 375
            G +P +  Y   I  +     L   +  L  M +N     ++P D  I  L +   C+ 
Sbjct: 175 NGCRPDAFVYTALISGLAKIGKLDEALVYLNQMVENGCARGVEP-DVVIHNLVIRQLCAS 233

Query: 376 ALELDLAEALLDQISRCTNPK--PFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYE 433
              L+ A A  D++    +     F+  +AA    ++ E AI    KM ++     R + 
Sbjct: 234 G-NLEDALAYFDELDDSLDLTHFTFNPLVAALCKAERTEEAIAFVKKMSER-----RCFP 287

Query: 434 LLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMI 493
            LF+    V+   + G +   +   K   A+E     + + ++ I     +  L   G +
Sbjct: 288 TLFTYTSLVDGFLKLGRLDEALLQLK--EAVERGFIPDAVTYTSI-----IDGLCKLGRV 340

Query: 494 RELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIM 550
            E  + F + +     P   TY  ++   ++A+   +A  +++QM   G   +  TYNI+
Sbjct: 341 EEGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNII 400

Query: 551 ID-CCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEG 609
           +D  C   R  ++ +  ++M  R G     +TY+AL+      G+   A+ L   +   G
Sbjct: 401 LDGLCKAGRVAEAYATFLAMEER-GCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRG 459

Query: 610 IPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
              +++ YN I++  C  G++    F  E++ Q ++ PD  T
Sbjct: 460 CEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYT 501



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 67/159 (42%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
            +  V++ L   +    A  + ++    G  P+  TYN+ ID          A  L+  M
Sbjct: 43  AFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQLLKKM 102

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
                 P T+TYTAL+  LL  G  DEA+ +L+ +  +G    +  Y  ++    + GR+
Sbjct: 103 DEKKCLPTTVTYTALVDGLLKAGRLDEAMAILEQMVEKGNSPTLKTYTVVIDGLSKAGRV 162

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAM 669
           +    I   M  N  +PD      + SG    G  + A+
Sbjct: 163 EEARRIFVDMLGNGCRPDAFVYTALISGLAKIGKLDEAL 201



 Score = 55.8 bits (133), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 117/595 (19%), Positives = 218/595 (36%), Gaps = 48/595 (8%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           + +++  LC+   L+EA +++     R G  P    YN F+    K   +  A   L  M
Sbjct: 44  FTVVINGLCREKRLDEAFSVLE-RAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQLLKKM 102

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYSLSIFSLRKFVWSFTRLRDL 243
           D +      VTYT L+   +    L     I E  + K  S ++ +    +   ++   +
Sbjct: 103 DEKKCLPTTVTYTALVDGLLKAGRLDEAMAILEQMVEKGNSPTLKTYTVVIDGLSKAGRV 162

Query: 244 KSAYETLQHMVALAMMGKLYI-NRTSEGRLRSSRLDIP-IPLNALPVMKVLRWSFSDV-I 300
           + A      M+        ++      G  +  +LD   + LN +      R    DV I
Sbjct: 163 EEARRIFVDMLGNGCRPDAFVYTALISGLAKIGKLDEALVYLNQMVENGCARGVEPDVVI 222

Query: 301 HACGRTQ--NSGLAEQLMLQMQSL--GLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQ 356
           H     Q   SG  E  +     L   L  +  T++  + A+         +  +K M +
Sbjct: 223 HNLVIRQLCASGNLEDALAYFDELDDSLDLTHFTFNPLVAALCKAERTEEAIAFVKKMSE 282

Query: 357 NNLKPQDSTIATLSVECSKALELDLAEALL---DQISRCTNPKP--FSAFLAACDTMDKP 411
               P   T  +L     K   LD  EALL   + + R   P    +++ +     + + 
Sbjct: 283 RRCFPTLFTYTSLVDGFLKLGRLD--EALLQLKEAVERGFIPDAVTYTSIIDGLCKLGRV 340

Query: 412 ERAIKIFAKMRQK-LRPDIRTYELLFSLF-------------------GNVNAPYEEGNM 451
           E   + F +MR +   PD  TY  L   F                   G V +      +
Sbjct: 341 EEGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNII 400

Query: 452 FSQVDSAKRIN---AIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYF---CDSKT 505
              +  A R+    A  + M       + ++   L+    +EG +   ++ F    D   
Sbjct: 401 LDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGC 460

Query: 506 PLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI-DCCSIIRCFKSAS 564
                +YN ++  L  A +  +A   F+++    + P+  T+N  +   C  +       
Sbjct: 461 EPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNSFLHGLCQRLDTVGDGV 520

Query: 565 ALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKA 624
            L   MV  G  P   +Y+ L+  +   G  +  L +   +   G+  DV+++NT+++  
Sbjct: 521 ELFESMVSQGTSPNLHSYSILMDGICRAGGLEVTLEIFHEMVSRGVAPDVVVFNTLIRWL 580

Query: 625 CEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRM 679
           C  GR+D    +  ++ + +  PD  +   +      C      ME  ++LS  M
Sbjct: 581 CIAGRVDEALEVFREL-ERRSAPDAWSYWSLLDALSRC----ERMEEARLLSFHM 630



 Score = 42.7 bits (99), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 35/155 (22%), Positives = 61/155 (39%), Gaps = 3/155 (1%)

Query: 509 TPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVS 568
           T     +L+ L +  +  RAM +  +M      P+   + ++I+     +    A +++ 
Sbjct: 9   TRVCTALLNGLCKTGQLDRAMLLLDEMPC---SPDMVAFTVVINGLCREKRLDEAFSVLE 65

Query: 569 MMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
             VR G  P  +TY   I  L      D+A  LL  +  +      + Y  ++    + G
Sbjct: 66  RAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYTALVDGLLKAG 125

Query: 629 RIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
           R+D    I+EQM +    P   T   V  G    G
Sbjct: 126 RLDEAMAILEQMVEKGNSPTLKTYTVVIDGLSKAG 160



 Score = 40.8 bits (94), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 43/97 (44%)

Query: 577 PQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFI 636
           P  + +T +I  L      DEA ++L+     G   D + YN  +   C+  R+D    +
Sbjct: 39  PDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQL 98

Query: 637 IEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           +++M + K  P   T   +  G +  G  + AM  L+
Sbjct: 99  LKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAILE 135


>gi|297806221|ref|XP_002870994.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316831|gb|EFH47253.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 819

 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 94/455 (20%), Positives = 172/455 (37%), Gaps = 69/455 (15%)

Query: 299 VIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNN 358
           VI   G+      A  L   +Q  G     ++Y   I A  +    R  + V K M++  
Sbjct: 179 VISMLGKEGRVSSAANLFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEEG 238

Query: 359 LKPQDSTI-ATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKPERA 414
            KP   T    L+V        +   +L++++       +   ++  +  C      + A
Sbjct: 239 CKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEA 298

Query: 415 IKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNI 473
            ++F +M+      D  TY  L  ++G  + P E         + K +N +E+    N  
Sbjct: 299 AQVFEEMKAAGFSHDKVTYNALLDVYGKSHRPKE---------AMKVLNEMEL----NGF 345

Query: 474 QHSHISMKNLLKALGAEGMIRELIQY---FCDSKTPLGTPTYNTVLHSLVEAQESHRAME 530
             S ++  +L+ A   +GM+ E ++      +  T     TY T+L     A +   AM 
Sbjct: 346 SPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMN 405

Query: 531 IFKQMKTCGIPPNAATYNIMI-------------------DCC----------SIIRCF- 560
           IF++M+  G  PN  T+N  I                   + C          +++  F 
Sbjct: 406 IFEEMRNAGCKPNICTFNAFIKMYGNRGKFVDMMKIFDEINVCGLSPDIVTWNTLLAVFG 465

Query: 561 -----KSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVL 615
                   S +   M R GF P+  T+  LI      G F++A+ +   +   G+  D+ 
Sbjct: 466 QNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLS 525

Query: 616 LYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVN---CGFHNSAME-- 670
            YNT+L      G  +  E ++ +M   + +P+  T   +   Y N    G  +S  E  
Sbjct: 526 TYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEV 585

Query: 671 --------ALQVLSMRMLCEEVSTLEEKRSDFEDL 697
                   A+ + ++ ++C +   L E    F +L
Sbjct: 586 YSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSEL 620



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 91/431 (21%), Positives = 163/431 (37%), Gaps = 66/431 (15%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ ++   G++     A +++ +M+  G  PS  TY+  I A   D  L   ME+   M
Sbjct: 316 TYNALLDVYGKSHRPKEAMKVLNEMELNGFSPSIVTYNSLISAYARDGMLDEAMELKNQM 375

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDK 410
            +   KP   T  TL     +A +++ A  + +++ R    KP    F+AF+       K
Sbjct: 376 AEKGTKPDVFTYTTLLSGFERAGKVESAMNIFEEM-RNAGCKPNICTFNAFIKMYGNRGK 434

Query: 411 PERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSA----------- 458
               +KIF ++    L PDI T+  L ++FG      E   +F ++  A           
Sbjct: 435 FVDMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNT 494

Query: 459 -----KRINAIEMDMA------RNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSK 504
                 R  + E  M          +     +   +L AL   GM  +   ++    D +
Sbjct: 495 LISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGR 554

Query: 505 TPLGTPTYNTVLHSLVEAQE----------------SHRAM------------------- 529
                 TY ++LH+    +E                  RA+                   
Sbjct: 555 CKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAE 614

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
             F ++K  G  P+  T N M+      +    A+ ++  M   GF P   TY +L+ + 
Sbjct: 615 RAFSELKERGFSPDITTLNSMVSIYGRRQMVGKANEVLDYMKERGFTPSMATYNSLMYMH 674

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649
               DF ++  +L  +  +GI  D++ YNT++   C   R+     I  +M  + + PD 
Sbjct: 675 SRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRDSGIVPDV 734

Query: 650 STCHFVFSGYV 660
            T +     Y 
Sbjct: 735 ITYNTFIGSYA 745



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 83/344 (24%), Positives = 145/344 (42%), Gaps = 28/344 (8%)

Query: 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
           R +F+ +I A  R  +   A  +  +M   G+ P   TY+  + A+          +VL 
Sbjct: 489 RETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLA 548

Query: 353 IMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI-SRCTNP-----KPFSAFLAACD 406
            M+    KP + T  +L    +   E+ L  +L +++ S    P     K      + CD
Sbjct: 549 EMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCD 608

Query: 407 TMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIE 465
            + + ERA   F++++++   PDI T   + S++G        G     +D  K      
Sbjct: 609 LLPEAERA---FSELKERGFSPDITTLNSMVSIYGRRQM---VGKANEVLDYMKERGFTP 662

Query: 466 MDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQES 525
                N++ + H    +  K+   E ++RE++             +YNTV+++       
Sbjct: 663 SMATYNSLMYMHSRSADFGKS---EEILREILA----KGIKPDIISYNTVIYAYCRNTRM 715

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
             A  IF +M+  GI P+  TYN  I   +    F+ A  +V  M++ G  P   TY ++
Sbjct: 716 RDASRIFSEMRDSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSI 775

Query: 586 IKILLDYGDFDEA-LNLLDLVSLEGIPH-----DVLLYNTILKK 623
           +         DEA L + DL +L+  PH     D+ L   I+KK
Sbjct: 776 VDGYCKLNRKDEAKLFVEDLRNLD--PHAPKGEDLRLLERIVKK 817


>gi|147833323|emb|CAN61988.1| hypothetical protein VITISV_026694 [Vitis vinifera]
          Length = 553

 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 82/343 (23%), Positives = 151/343 (44%), Gaps = 21/343 (6%)

Query: 350 VLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAA-CDTM 408
           V++I++Q+   P   T   L     K+ E+D A  +LD+++   +   ++  L   CD+ 
Sbjct: 114 VMEILEQSGAVPDVITYNVLISGYCKSGEIDNALQVLDRMNVAPDVVTYNTILRTLCDS- 172

Query: 409 DKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMD 467
            K ++A+++  +  QK   PD+ TY +L      + A  +E    S V  A ++    +D
Sbjct: 173 GKLKQAMEVLDRQLQKECYPDVITYTIL------IEATCKE----SGVGQAMKL----LD 218

Query: 468 MARNNIQHSHISMKN-LLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQ 523
             RN      +   N L+  +  EG + E I++  +  +    P   T+N +L S+    
Sbjct: 219 EMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTG 278

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
               A ++   M   G  P+  T+NI+I+          A  ++  M   G  P +++Y 
Sbjct: 279 RWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYN 338

Query: 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
            L+         D A+  LD++   G   D++ YNT+L   C+ G++DV   I+ Q+   
Sbjct: 339 PLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSK 398

Query: 644 KVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
              P   T + V  G    G    A++ L  +  + L  ++ T
Sbjct: 399 GCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIIT 441



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 95/373 (25%), Positives = 154/373 (41%), Gaps = 32/373 (8%)

Query: 326 PSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEAL 385
           P   TY   I A   + G+   M++L  M+    KP   T   L     K   LD A   
Sbjct: 192 PDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKF 251

Query: 386 LDQI-SRCTNPKPFS---AFLAACDT---MDKPERAIKIFAKM-RQKLRPDIRTYELLFS 437
           L+ + S    P   +      + C T   MD    A K+ + M R+   P + T+ +L  
Sbjct: 252 LNNMPSYGCQPNVITHNIILRSMCSTGRWMD----AEKLLSDMLRKGCSPSVVTFNIL-- 305

Query: 438 LFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELI 497
               +N    +G +   +D  ++       M  +    + +S   LL     E  +   I
Sbjct: 306 ----INFLCRQGLLGRAIDILEK-------MPMHGCTPNSLSYNPLLHGFCKEKKMDRAI 354

Query: 498 QYFCDSKTPLG----TPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC 553
           +Y  D     G      TYNT+L +L +  +   A+EI  Q+ + G  P   TYN +ID 
Sbjct: 355 EYL-DIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDG 413

Query: 554 CSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHD 613
            S +   + A  L+  M R G  P  +TY++L+  L   G  DEA+     +   GI  +
Sbjct: 414 LSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPN 473

Query: 614 VLLYNTILKKACEKGRID-VIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEAL 672
            + YN+I+   C+  + D  I+F +  M   + +P  +T   +  G    G    A++ L
Sbjct: 474 AITYNSIMLGLCKSRQTDRAIDF-LAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLL 532

Query: 673 QVLSMRMLCEEVS 685
             L  R L ++ S
Sbjct: 533 NELCSRGLVKKSS 545



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 83/367 (22%), Positives = 156/367 (42%), Gaps = 51/367 (13%)

Query: 309 SGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIAT 368
           SG  +  +  +  + + P   TY+  +R +     L+  MEVL    Q    P   T   
Sbjct: 140 SGEIDNALQVLDRMNVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTI 199

Query: 369 LSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRP 427
           L       +E    E+ + Q                         A+K+  +MR K  +P
Sbjct: 200 L-------IEATCKESGVGQ-------------------------AMKLLDEMRNKGSKP 227

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI--NAIEMDMARNNIQHSHI--SMKNL 483
           D+ TY +L      +N   +EG    ++D A +   N        N I H+ I  SM + 
Sbjct: 228 DVVTYNVL------INGICKEG----RLDEAIKFLNNMPSYGCQPNVITHNIILRSMCST 277

Query: 484 LKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPN 543
            + + AE ++ ++++  C         T+N +++ L       RA++I ++M   G  PN
Sbjct: 278 GRWMDAEKLLSDMLRKGCSPS----VVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPN 333

Query: 544 AATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLD 603
           + +YN ++      +    A   + +MV  G YP  +TY  L+  L   G  D A+ +L+
Sbjct: 334 SLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILN 393

Query: 604 LVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
            +S +G    ++ YNT++    + G+ +    ++++M +  ++PD  T   + SG    G
Sbjct: 394 QLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREG 453

Query: 664 FHNSAME 670
             + A++
Sbjct: 454 KVDEAIK 460



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 98/472 (20%), Positives = 182/472 (38%), Gaps = 99/472 (20%)

Query: 128 MMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSR 187
           +++  C+ G  ++A+ ++  L E+ G  P +  YN  +    K   + +A   L ++D  
Sbjct: 98  LIRGFCRIGKTKKATWVMEIL-EQSGAVPDVITYNVLISGYCKSGEIDNA---LQVLDRM 153

Query: 188 MVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYSLSIFSLRKFVWSFTRLRDLKSA 246
            V  + VTY  +L+       L    E+ +  + K     + +    + +  +   +  A
Sbjct: 154 NVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQA 213

Query: 247 YETLQHMVALAMMGKLYI-NRTSEGRLRSSRLDIPIP-LNALP-------------VMKV 291
            + L  M        +   N    G  +  RLD  I  LN +P             +++ 
Sbjct: 214 MKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRS 273

Query: 292 L----RW--------------------SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPS 327
           +    RW                    +F+ +I+   R    G A  ++ +M   G  P+
Sbjct: 274 MCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPN 333

Query: 328 SHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLD 387
           S +Y+  +     ++ +   +E L IM      P   T  TL     K  ++D+A  +L+
Sbjct: 334 SLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILN 393

Query: 388 QI-SRCTNPK--PFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVN 443
           Q+ S+  +P    ++  +     + K ERAIK+  +MR+K L+PDI TY  L S      
Sbjct: 394 QLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVS------ 447

Query: 444 APYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDS 503
                                                      L  EG + E I++F D 
Sbjct: 448 ------------------------------------------GLSREGKVDEAIKFFHDL 465

Query: 504 KTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID 552
           +     P   TYN+++  L +++++ RA++    M +    P  ATY I+I+
Sbjct: 466 EGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIE 517



 Score = 56.2 bits (134), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 67/142 (47%), Gaps = 15/142 (10%)

Query: 516 LHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCF------KSASALVSM 569
           L  LV   E     +  + M   G  P+      +I C S+IR F      K A+ ++ +
Sbjct: 64  LRRLVRNGELEDGFKFLESMVYRGDIPD------IIPCTSLIRGFCRIGKTKKATWVMEI 117

Query: 570 MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
           + + G  P  +TY  LI      G+ D AL +LD ++   +  DV+ YNTIL+  C+ G+
Sbjct: 118 LEQSGAVPDVITYNVLISGYCKSGEIDNALQVLDRMN---VAPDVVTYNTILRTLCDSGK 174

Query: 630 IDVIEFIIEQMHQNKVQPDPST 651
           +     ++++  Q +  PD  T
Sbjct: 175 LKQAMEVLDRQLQKECYPDVIT 196



 Score = 43.1 bits (100), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 3/103 (2%)

Query: 570 MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
           MV  G  P  +  T+LI+     G   +A  +++++   G   DV+ YN ++   C+ G 
Sbjct: 83  MVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPDVITYNVLISGYCKSGE 142

Query: 630 IDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEAL 672
           ID    ++++M+   V PD  T + +     + G    AME L
Sbjct: 143 IDNALQVLDRMN---VAPDVVTYNTILRTLCDSGKLKQAMEVL 182



 Score = 39.7 bits (91), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 56/269 (20%), Positives = 109/269 (40%), Gaps = 18/269 (6%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGE--RYGIYPILPVYNSFLGACAKLHSMVHANLCLD 182
           Y +++  +CK G L+EA   I FL     YG  P +  +N  L +       + A   L 
Sbjct: 232 YNVLINGICKEGRLDEA---IKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLS 288

Query: 183 LMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH-YSLSIFSLRKFVWSFTRLR 241
            M  +    + VT+  L+     Q  L    +I E    H  + +  S    +  F + +
Sbjct: 289 DMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEK 348

Query: 242 DLKSAYETLQHMVALAMMGKLYINRTSEGRL-RSSRLDIPIP-LNAL------PVMKVLR 293
            +  A E L  MV+      +    T    L +  ++D+ +  LN L      PV+    
Sbjct: 349 KMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVL---- 404

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
            +++ VI    +   +  A +L+ +M+  GL+P   TY   +  +  +  +   ++    
Sbjct: 405 ITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHD 464

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLA 382
           ++   ++P   T  ++ +   K+ + D A
Sbjct: 465 LEGLGIRPNAITYNSIMLGLCKSRQTDRA 493


>gi|357477565|ref|XP_003609068.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
 gi|355510123|gb|AES91265.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
          Length = 932

 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 85/389 (21%), Positives = 153/389 (39%), Gaps = 27/389 (6%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ VI    R      AE+ + +M + G +P+  TY+  I        + +   +LK  
Sbjct: 367 TYNTVICGLCRKSRVVEAEECLHKMVNGGFEPNDFTYNSIIDGYCKKGMVVDANRILKDA 426

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALL-DQISRCTNPK--PFSAFLAACDTMDKP 411
                KP + T  +L     +  + D A A+  D + +   P    ++  +         
Sbjct: 427 VFKGFKPDEFTYCSLVNGFCQDGDPDQAMAVFKDGLGKGLRPSIIVYNTLIKGLCQQGLI 486

Query: 412 ERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
             A+++  +M +K  +PDI TY L+ +    +    +  ++     +   I  I      
Sbjct: 487 LPALQLMNEMAEKGCKPDIWTYNLIINGLCKMGCLSDANHLIGDAITKGCIPDI---FTY 543

Query: 471 NNIQHSHI------SMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQE 524
           N +   +       S   L+  + ++GM  ++I             TYNT+L+ L +  +
Sbjct: 544 NTLVDGYCRQLKLDSAIELVNRMWSQGMTPDVI-------------TYNTLLNGLCKTAK 590

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
           S   MEIFK M   G  PN  TYN +I+     +    A  L+  M   G  P  +++  
Sbjct: 591 SEEVMEIFKAMTEKGCAPNIITYNTIIESLCNSKKVNEAVDLLGEMKSKGLTPDVVSFGT 650

Query: 585 LIKILLDYGDFDEALNLLDLVSLE-GIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
           LI      GD D A  L   +  +  + H    YN I+    E+  + +   +  +M +N
Sbjct: 651 LITGFCKVGDLDGAYGLFRGMEKQYDVSHTTATYNIIISAFSEQLNMKMALRLFSEMKKN 710

Query: 644 KVQPDPSTCHFVFSGYVNCGFHNSAMEAL 672
              PD  T   +  G+   G  N   + L
Sbjct: 711 GCDPDNYTYRVLIDGFCKTGNVNQGYKFL 739



 Score = 80.5 bits (197), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 119/561 (21%), Positives = 217/561 (38%), Gaps = 74/561 (13%)

Query: 105 FVMETWRMMEE---KEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVY 161
           FV+E+ R+ ++   + +  N   + + +Q LCK G L+ A  L+  +  R G+ P +  Y
Sbjct: 310 FVLESERLFDKVLKRGVCPNLFTFNIFIQGLCKEGSLDRAVRLLGCV-SREGLRPDVVTY 368

Query: 162 NSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI- 220
           N+ +    +   +V A  CL  M +     N+ TY  ++     +  +   + I +D + 
Sbjct: 369 NTVICGLCRKSRVVEAEECLHKMVNGGFEPNDFTYNSIIDGYCKKGMVVDANRILKDAVF 428

Query: 221 KHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIP 280
           K +    F+    V  F +  D   A    +  +   +   + +  T    L    L +P
Sbjct: 429 KGFKPDEFTYCSLVNGFCQDGDPDQAMAVFKDGLGKGLRPSIIVYNTLIKGLCQQGLILP 488

Query: 281 IPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVS 340
                                          A QLM +M   G +P   TY+  I  +  
Sbjct: 489 -------------------------------ALQLMNEMAEKGCKPDIWTYNLIINGLCK 517

Query: 341 DRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI-SRCTNPK--P 397
              L +   ++         P   T  TL     + L+LD A  L++++ S+   P    
Sbjct: 518 MGCLSDANHLIGDAITKGCIPDIFTYNTLVDGYCRQLKLDSAIELVNRMWSQGMTPDVIT 577

Query: 398 FSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVD 456
           ++  L       K E  ++IF  M +K   P+I TY  +     N               
Sbjct: 578 YNTLLNGLCKTAKSEEVMEIFKAMTEKGCAPNIITYNTIIESLCN--------------- 622

Query: 457 SAKRIN-AIEM--DMARNNIQHSHISMKNLLKAL-------GAEGMIRELIQYFCDSKTP 506
            +K++N A+++  +M    +    +S   L+          GA G+ R + + +  S T 
Sbjct: 623 -SKKVNEAVDLLGEMKSKGLTPDVVSFGTLITGFCKVGDLDGAYGLFRGMEKQYDVSHT- 680

Query: 507 LGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASAL 566
             T TYN ++ +  E      A+ +F +MK  G  P+  TY ++ID              
Sbjct: 681 --TATYNIIISAFSEQLNMKMALRLFSEMKKNGCDPDNYTYRVLIDGFCKTGNVNQGYKF 738

Query: 567 VSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE 626
           +   +  GF P   T+  ++  L       EA+ ++ L+  + I  D +  NTI  +A +
Sbjct: 739 LLENIEKGFIPSLTTFGRVLNCLCVEHKVQEAVGIIHLMVQKDIVPDTV--NTIF-EADK 795

Query: 627 KGRID--VIEFIIEQMHQNKV 645
           KG I     EF+ + +   K+
Sbjct: 796 KGHITYHAYEFLYDGVRDKKI 816



 Score = 79.3 bits (194), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 91/428 (21%), Positives = 170/428 (39%), Gaps = 39/428 (9%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTY----DGFIRAIVSDRGLRNGME 349
           ++++  I +  RT     A +L+  M  LG   ++  Y     GF     +DR      E
Sbjct: 226 YTYTIRIKSFCRTGRPYAALRLLRNMPVLGCFSNAVAYCTVVTGFYEFGDNDRA----RE 281

Query: 350 VLKIMQQNNLKPQDSTIATL-SVECSKALELDLAEALLDQISR---CTNPKPFSAFLAAC 405
           +   M +  L P  +T   L    C K   L+ +E L D++ +   C N   F+ F+   
Sbjct: 282 LFDEMLECCLCPDVTTFNKLVHALCKKGFVLE-SERLFDKVLKRGVCPNLFTFNIFIQGL 340

Query: 406 DTMDKPERAIKIFAKM-RQKLRPDIRTYELLFS--------------LFGNVNAPYEEGN 450
                 +RA+++   + R+ LRPD+ TY  +                L   VN  +E  +
Sbjct: 341 CKEGSLDRAVRLLGCVSREGLRPDVVTYNTVICGLCRKSRVVEAEECLHKMVNGGFEPND 400

Query: 451 M--------FSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCD 502
                    + +       N I  D      +    +  +L+     +G   + +  F D
Sbjct: 401 FTYNSIIDGYCKKGMVVDANRILKDAVFKGFKPDEFTYCSLVNGFCQDGDPDQAMAVFKD 460

Query: 503 SKTPLGTPT---YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRC 559
                  P+   YNT++  L +      A+++  +M   G  P+  TYN++I+    + C
Sbjct: 461 GLGKGLRPSIIVYNTLIKGLCQQGLILPALQLMNEMAEKGCKPDIWTYNLIINGLCKMGC 520

Query: 560 FKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNT 619
              A+ L+   +  G  P   TY  L+         D A+ L++ +  +G+  DV+ YNT
Sbjct: 521 LSDANHLIGDAITKGCIPDIFTYNTLVDGYCRQLKLDSAIELVNRMWSQGMTPDVITYNT 580

Query: 620 ILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRM 679
           +L   C+  + + +  I + M +    P+  T + +     N    N A++ L  +  + 
Sbjct: 581 LLNGLCKTAKSEEVMEIFKAMTEKGCAPNIITYNTIIESLCNSKKVNEAVDLLGEMKSKG 640

Query: 680 LCEEVSTL 687
           L  +V + 
Sbjct: 641 LTPDVVSF 648



 Score = 79.3 bits (194), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 79/378 (20%), Positives = 158/378 (41%), Gaps = 24/378 (6%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +F+ ++HA  +      +E+L  ++   G+ P+  T++ FI+ +  +  L   + +L  +
Sbjct: 297 TFNKLVHALCKKGFVLESERLFDKVLKRGVCPNLFTFNIFIQGLCKEGSLDRAVRLLGCV 356

Query: 355 QQNNLKPQDSTIATLSVE-CSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPER 413
            +  L+P   T  T+    C K+  ++  E L   ++    P  F+ + +  D   K   
Sbjct: 357 SREGLRPDVVTYNTVICGLCRKSRVVEAEECLHKMVNGGFEPNDFT-YNSIIDGYCKKGM 415

Query: 414 AIKIFAKMR----QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
            +     ++    +  +PD  TY  L              N F Q     +  A+  D  
Sbjct: 416 VVDANRILKDAVFKGFKPDEFTYCSLV-------------NGFCQDGDPDQAMAVFKDGL 462

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESH 526
              ++ S I    L+K L  +G+I   +Q   +       P   TYN +++ L +     
Sbjct: 463 GKGLRPSIIVYNTLIKGLCQQGLILPALQLMNEMAEKGCKPDIWTYNLIINGLCKMGCLS 522

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDC-CSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
            A  +     T G  P+  TYN ++D  C  ++   SA  LV+ M   G  P  +TY  L
Sbjct: 523 DANHLIGDAITKGCIPDIFTYNTLVDGYCRQLK-LDSAIELVNRMWSQGMTPDVITYNTL 581

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           +  L      +E + +   ++ +G   +++ YNTI++  C   +++    ++ +M    +
Sbjct: 582 LNGLCKTAKSEEVMEIFKAMTEKGCAPNIITYNTIIESLCNSKKVNEAVDLLGEMKSKGL 641

Query: 646 QPDPSTCHFVFSGYVNCG 663
            PD  +   + +G+   G
Sbjct: 642 TPDVVSFGTLITGFCKVG 659



 Score = 70.1 bits (170), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 79/356 (22%), Positives = 142/356 (39%), Gaps = 26/356 (7%)

Query: 318 QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKAL 377
           +M      PS ++Y+  I  I+ + G  N  +  K+  +   K  +S + T ++      
Sbjct: 180 RMDLFNCDPSVYSYNA-IMNILVEFGYFN--QAHKVYMRMKDKKVESDVYTYTIRIKSFC 236

Query: 378 ELDLAEALLDQISRCTNPKPFSAFLAACDTM------DKPERAIKIFAKMRQK-LRPDIR 430
                 A L  +        FS  +A C  +         +RA ++F +M +  L PD+ 
Sbjct: 237 RTGRPYAALRLLRNMPVLGCFSNAVAYCTVVTGFYEFGDNDRARELFDEMLECCLCPDVT 296

Query: 431 TYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAE 490
           T+  L           E   +F +V              +  +  +  +    ++ L  E
Sbjct: 297 TFNKLVHALCKKGFVLESERLFDKV-------------LKRGVCPNLFTFNIFIQGLCKE 343

Query: 491 GMIRELIQYF-CDSKTPL--GTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATY 547
           G +   ++   C S+  L     TYNTV+  L        A E   +M   G  PN  TY
Sbjct: 344 GSLDRAVRLLGCVSREGLRPDVVTYNTVICGLCRKSRVVEAEECLHKMVNGGFEPNDFTY 403

Query: 548 NIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSL 607
           N +ID          A+ ++   V  GF P   TY +L+      GD D+A+ +      
Sbjct: 404 NSIIDGYCKKGMVVDANRILKDAVFKGFKPDEFTYCSLVNGFCQDGDPDQAMAVFKDGLG 463

Query: 608 EGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
           +G+   +++YNT++K  C++G I     ++ +M +   +PD  T + + +G    G
Sbjct: 464 KGLRPSIIVYNTLIKGLCQQGLILPALQLMNEMAEKGCKPDIWTYNLIINGLCKMG 519



 Score = 39.7 bits (91), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 48/227 (21%), Positives = 90/227 (39%), Gaps = 12/227 (5%)

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSL-VEAQESH- 526
            +   +H+  + K++L+ LG  G   E+     + ++ L     NT+L  + VEA   + 
Sbjct: 111 TKQGFKHTLFTYKSMLQKLGFHGKFNEMENLLSEMRSNLD----NTLLEGVYVEAMRFYG 166

Query: 527 ------RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTM 580
                  A++ F++M      P+  +YN +++       F  A  +   M          
Sbjct: 167 RKGKIQEAVDTFERMDLFNCDPSVYSYNAIMNILVEFGYFNQAHKVYMRMKDKKVESDVY 226

Query: 581 TYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQM 640
           TYT  IK     G    AL LL  + + G   + + Y T++    E G  D    + ++M
Sbjct: 227 TYTIRIKSFCRTGRPYAALRLLRNMPVLGCFSNAVAYCTVVTGFYEFGDNDRARELFDEM 286

Query: 641 HQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTL 687
            +  + PD +T + +       GF   +      +  R +C  + T 
Sbjct: 287 LECCLCPDVTTFNKLVHALCKKGFVLESERLFDKVLKRGVCPNLFTF 333


>gi|413950074|gb|AFW82723.1| hypothetical protein ZEAMMB73_503137 [Zea mays]
          Length = 643

 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 76/357 (21%), Positives = 146/357 (40%), Gaps = 30/357 (8%)

Query: 318 QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKAL 377
            M+  G+ P+  TY+  +RA+  +  +    ++L  M +    P D T AT+     K  
Sbjct: 149 NMRKDGVHPNVFTYNLLVRALCQNNRVGAARKMLDEMARKGCPPDDVTYATIVSVLCKLD 208

Query: 378 ELDLAEALLDQISRCTNPKPFSA-----FLAACDTMDKPERAIKIFAKMRQKLRPDIRTY 432
            LD A  +L  +       P +A      LA C      E    +   + + L+P++ TY
Sbjct: 209 RLDEATEVLAAM------PPVAASYNAIVLALCREFRMQEVFSVVSDMVGRGLQPNVITY 262

Query: 433 ELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGM 492
             +              + F +    +   AI   M       + ++   L++ L  +G 
Sbjct: 263 TTIV-------------DAFCKAGELRMACAILARMVITGCTPNVVTFTALVRGLFDDGR 309

Query: 493 IRELI---QYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNI 549
           + + +   ++         T +YN ++  L    +   A  I   M+  G  PN  TY+ 
Sbjct: 310 VHDALDMWRWMVAEGWAPSTVSYNILIRGLCSVGDLKGASSILNSMEQHGCFPNVRTYST 369

Query: 550 MIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEG 609
           +ID  S       A ++ + M R G  P  + YT ++ +      F++A +L+D + LE 
Sbjct: 370 LIDGFSKAGDLGGAISIWNDMSRSGCKPNVVVYTNMVDVFCKKLMFNQAKSLIDKMLLEN 429

Query: 610 IPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYV---NCG 663
            P + + +NT+++  C+  R+     +  +M ++   P+  T + +  G     NCG
Sbjct: 430 CPPNTVTFNTLIRSLCDCRRVGRALGVFHEMRRHGCVPNGRTYNELIHGLFREGNCG 486



 Score = 76.6 bits (187), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 110/539 (20%), Positives = 216/539 (40%), Gaps = 67/539 (12%)

Query: 133 CKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKN 192
           C G  +  A  L+Y    + G++P +  YN  + A  + + +  A   LD M  +    +
Sbjct: 134 CCGENMVGAVVLVYDNMRKDGVHPNVFTYNLLVRALCQNNRVGAARKMLDEMARKGCPPD 193

Query: 193 EVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQH 252
           +VTY  ++ +      L    E+    +        S    V +  R   ++  +  +  
Sbjct: 194 DVTYATIVSVLCKLDRLDEATEV----LAAMPPVAASYNAIVLALCREFRMQEVFSVVSD 249

Query: 253 MVALAMMGKLYINRT------SEGRLRSS-----RLDIP-IPLNALPVMKVLRWSFSDVI 300
           MV   +   +    T        G LR +     R+ I     N +    ++R  F D  
Sbjct: 250 MVGRGLQPNVITYTTIVDAFCKAGELRMACAILARMVITGCTPNVVTFTALVRGLFDD-- 307

Query: 301 HACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLK 360
              GR  +   A  +   M + G  PS+ +Y+  IR + S   L+    +L  M+Q+   
Sbjct: 308 ---GRVHD---ALDMWRWMVAEGWAPSTVSYNILIRGLCSVGDLKGASSILNSMEQHGCF 361

Query: 361 PQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAK 420
           P   T +TL    SKA +L  A ++ + +SR           + C    KP   + ++  
Sbjct: 362 PNVRTYSTLIDGFSKAGDLGGAISIWNDMSR-----------SGC----KPN--VVVYTN 404

Query: 421 MRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISM 480
           M      D+   +L+F+               S +D     N     +  N +  S    
Sbjct: 405 MV-----DVFCKKLMFN------------QAKSLIDKMLLENCPPNTVTFNTLIRSLCDC 447

Query: 481 KNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGI 540
           + + +ALG   +  E+ ++ C    P G  TYN ++H L        A+ +  +M++ GI
Sbjct: 448 RRVGRALG---VFHEMRRHGC---VPNGR-TYNELIHGLFREGNCGDALHMVTEMQSHGI 500

Query: 541 PPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALN 600
             +  TYN ++      R  + A   V  M+  G  P   T++A+I      G+   A  
Sbjct: 501 ELSLVTYNTVVSGLCQTRMSREAMVFVGKMIVQGIQPNAFTFSAIIHAYCKEGEVRMAAW 560

Query: 601 LLDLVSLEGIPHDVLLYNTILKKACEKGR-IDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
           +L  +++     ++L+Y  ++ + C + + +D + ++++ +++  + P+  T + +  G
Sbjct: 561 MLGAMNVVNCHRNILVYTILMAELCNQDKLVDAMTYLLKMLYEG-IYPNTVTWNVLVRG 618



 Score = 69.7 bits (169), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 54/250 (21%), Positives = 104/250 (41%), Gaps = 16/250 (6%)

Query: 415 IKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNI 473
           + ++  MR+  + P++ TY LL       N          +V +A+++     +MAR   
Sbjct: 144 VLVYDNMRKDGVHPNVFTYNLLVRALCQNN----------RVGAARKMLD---EMARKGC 190

Query: 474 QHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFK 533
               ++   ++  L     + E  +    +  P    +YN ++ +L           +  
Sbjct: 191 PPDDVTYATIVSVLCKLDRLDEATEVL--AAMPPVAASYNAIVLALCREFRMQEVFSVVS 248

Query: 534 QMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYG 593
            M   G+ PN  TY  ++D        + A A+++ MV  G  P  +T+TAL++ L D G
Sbjct: 249 DMVGRGLQPNVITYTTIVDAFCKAGELRMACAILARMVITGCTPNVVTFTALVRGLFDDG 308

Query: 594 DFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCH 653
              +AL++   +  EG     + YN +++  C  G +     I+  M Q+   P+  T  
Sbjct: 309 RVHDALDMWRWMVAEGWAPSTVSYNILIRGLCSVGDLKGASSILNSMEQHGCFPNVRTYS 368

Query: 654 FVFSGYVNCG 663
            +  G+   G
Sbjct: 369 TLIDGFSKAG 378



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 71/343 (20%), Positives = 136/343 (39%), Gaps = 20/343 (5%)

Query: 324 LQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAE 383
           + P + +Y+  + A+  +  ++    V+  M    L+P   T  T+     KA EL +A 
Sbjct: 220 MPPVAASYNAIVLALCREFRMQEVFSVVSDMVGRGLQPNVITYTTIVDAFCKAGELRMAC 279

Query: 384 ALLDQ--ISRCT-NPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLF 439
           A+L +  I+ CT N   F+A +       +   A+ ++  M  +   P   +Y +L    
Sbjct: 280 AILARMVITGCTPNVVTFTALVRGLFDDGRVHDALDMWRWMVAEGWAPSTVSYNILIRGL 339

Query: 440 GNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQY 499
            +V      G++     ++  +N++E      N++    +   L+      G +   I  
Sbjct: 340 CSV------GDLKG---ASSILNSMEQHGCFPNVR----TYSTLIDGFSKAGDLGGAISI 386

Query: 500 FCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSI 556
           + D       P    Y  ++    +    ++A  +  +M     PPN  T+N +I     
Sbjct: 387 WNDMSRSGCKPNVVVYTNMVDVFCKKLMFNQAKSLIDKMLLENCPPNTVTFNTLIRSLCD 446

Query: 557 IRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLL 616
            R    A  +   M R G  P   TY  LI  L   G+  +AL+++  +   GI   ++ 
Sbjct: 447 CRRVGRALGVFHEMRRHGCVPNGRTYNELIHGLFREGNCGDALHMVTEMQSHGIELSLVT 506

Query: 617 YNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
           YNT++   C+          + +M    +QP+  T   +   Y
Sbjct: 507 YNTVVSGLCQTRMSREAMVFVGKMIVQGIQPNAFTFSAIIHAY 549



 Score = 43.9 bits (102), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 34/161 (21%), Positives = 70/161 (43%), Gaps = 7/161 (4%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC-CSIIRCFKSASALVSM 569
           TYN ++ +L +      A ++  +M   G PP+  TY  ++   C + R  ++   L +M
Sbjct: 161 TYNLLVRALCQNNRVGAARKMLDEMARKGCPPDDVTYATIVSVLCKLDRLDEATEVLAAM 220

Query: 570 MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
                  P   +Y A++  L       E  +++  +   G+  +V+ Y TI+   C+ G 
Sbjct: 221 ------PPVAASYNAIVLALCREFRMQEVFSVVSDMVGRGLQPNVITYTTIVDAFCKAGE 274

Query: 630 IDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAME 670
           + +   I+ +M      P+  T   +  G  + G  + A++
Sbjct: 275 LRMACAILARMVITGCTPNVVTFTALVRGLFDDGRVHDALD 315


>gi|356551209|ref|XP_003543970.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Glycine max]
          Length = 687

 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 105/512 (20%), Positives = 198/512 (38%), Gaps = 62/512 (12%)

Query: 153 GIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAV 212
           GI P +  YN+ L +  K   +  A   L  M +     N+VTY  L+        +   
Sbjct: 197 GICPTVVTYNTMLDSFCKKGMVQEALQLLFQMQAMGCSPNDVTYNVLVNGLSHSGEMEQA 256

Query: 213 HEIWEDYIK-HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRT---- 267
            E+ +D ++    +S+++    +  +     ++ A    + M++   +  +    T    
Sbjct: 257 KELIQDMLRLGLEVSVYTYDPLIRGYCEKGQIEEASRLGEEMLSRGAVPTVVTYNTIMYG 316

Query: 268 --SEGRLRSSR--LDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLG 323
               GR+  +R  LD+ +  N +P +     S++ +I+   R  N G A  L  +++   
Sbjct: 317 LCKWGRVSDARKLLDVMVNKNLMPDL----VSYNTLIYGYTRLGNIGEAFLLFAELRYRS 372

Query: 324 LQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAE 383
           L PS  TY+  I  +     L   M +   M ++   P   T  T      K   L +A+
Sbjct: 373 LAPSVVTYNTLIDGLCRLGDLDVAMRLKDEMIKHGPDPDVFTFTTFVRGFCKMGNLPMAK 432

Query: 384 ALLDQ-ISRCTNPKPFSAF--LAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLF 439
            L D+ ++R   P  F+    +     +  P +A  +  +M  +   PD+ TY +     
Sbjct: 433 ELFDEMLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGFPPDLITYNVF---- 488

Query: 440 GNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQY 499
             ++  ++ GN+    +  K+       M  N +   H+                     
Sbjct: 489 --IDGLHKLGNLKEASELVKK-------MLYNGLVPDHV--------------------- 518

Query: 500 FCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRC 559
                      TY +++H+ + A    +A  +F +M + GI P+  TY ++I   ++   
Sbjct: 519 -----------TYTSIIHAHLMAGHLRKARALFLEMLSKGIFPSVVTYTVLIHSYAVRGR 567

Query: 560 FKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNT 619
            K A      M   G +P  +TY ALI  L      D+A N    +  +GI  +   Y  
Sbjct: 568 LKLAILHFFEMHEKGVHPNVITYNALINGLCKVRKMDQAYNFFAEMQAKGISPNKYTYTI 627

Query: 620 ILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
           ++ + C  G       + + M   ++QPD  T
Sbjct: 628 LINENCNLGHWQEALRLYKDMLDREIQPDSCT 659



 Score = 75.9 bits (185), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 81/355 (22%), Positives = 148/355 (41%), Gaps = 22/355 (6%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A++L+  M  LGL+ S +TYD  IR       +     + + M      P   T  T+  
Sbjct: 256 AKELIQDMLRLGLEVSVYTYDPLIRGYCEKGQIEEASRLGEEMLSRGAVPTVVTYNTIMY 315

Query: 372 ECSKALELDLAEALLD-QISRCTNPK--PFSAFLAACDTMDKPERAIKIFAKMRQK-LRP 427
              K   +  A  LLD  +++   P    ++  +     +     A  +FA++R + L P
Sbjct: 316 GLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRYRSLAP 375

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKA- 486
            + TY  L      +            +D A R+     +M ++       +    ++  
Sbjct: 376 SVVTYNTLIDGLCRL----------GDLDVAMRLKD---EMIKHGPDPDVFTFTTFVRGF 422

Query: 487 --LGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNA 544
             +G   M +EL     +         Y T +   ++  +  +A  + ++M   G PP+ 
Sbjct: 423 CKMGNLPMAKELFDEMLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGFPPDL 482

Query: 545 ATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNL-LD 603
            TYN+ ID    +   K AS LV  M+ +G  P  +TYT++I   L  G   +A  L L+
Sbjct: 483 ITYNVFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARALFLE 542

Query: 604 LVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
           ++S +GI   V+ Y  ++     +GR+ +      +MH+  V P+  T + + +G
Sbjct: 543 MLS-KGIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNALING 596



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 79/176 (44%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TYNT+L S  +      A+++  QM+  G  PN  TYN++++  S     + A  L+  M
Sbjct: 204 TYNTMLDSFCKKGMVQEALQLLFQMQAMGCSPNDVTYNVLVNGLSHSGEMEQAKELIQDM 263

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           +R G      TY  LI+   + G  +EA  L + +   G    V+ YNTI+   C+ GR+
Sbjct: 264 LRLGLEVSVYTYDPLIRGYCEKGQIEEASRLGEEMLSRGAVPTVVTYNTIMYGLCKWGRV 323

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
                +++ M    + PD  + + +  GY   G    A      L  R L   V T
Sbjct: 324 SDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRYRSLAPSVVT 379



 Score = 62.4 bits (150), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 57/262 (21%), Positives = 114/262 (43%), Gaps = 16/262 (6%)

Query: 412 ERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           E+ + +F KM  K L PD++    +  L  + +         + +D A+ +  +   M  
Sbjct: 148 EKCLLVFYKMVSKGLLPDVKNCNRVLRLLRDRD---------NNIDVAREVYNV---MVE 195

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHR 527
             I  + ++   +L +   +GM++E +Q     +    +P   TYN +++ L  + E  +
Sbjct: 196 CGICPTVVTYNTMLDSFCKKGMVQEALQLLFQMQAMGCSPNDVTYNVLVNGLSHSGEMEQ 255

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A E+ + M   G+  +  TY+ +I         + AS L   M+  G  P  +TY  ++ 
Sbjct: 256 AKELIQDMLRLGLEVSVYTYDPLIRGYCEKGQIEEASRLGEEMLSRGAVPTVVTYNTIMY 315

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
            L  +G   +A  LLD++  + +  D++ YNT++      G I     +  ++    + P
Sbjct: 316 GLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRYRSLAP 375

Query: 648 DPSTCHFVFSGYVNCGFHNSAM 669
              T + +  G    G  + AM
Sbjct: 376 SVVTYNTLIDGLCRLGDLDVAM 397



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 2/149 (1%)

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A E++  M  CGI P   TYN M+D        + A  L+  M   G  P  +TY  L+ 
Sbjct: 186 AREVYNVMVECGICPTVVTYNTMLDSFCKKGMVQEALQLLFQMQAMGCSPNDVTYNVLVN 245

Query: 588 ILLDYGDFDEALNLL-DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
            L   G+ ++A  L+ D++ L G+   V  Y+ +++  CEKG+I+    + E+M      
Sbjct: 246 GLSHSGEMEQAKELIQDMLRL-GLEVSVYTYDPLIRGYCEKGQIEEASRLGEEMLSRGAV 304

Query: 647 PDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
           P   T + +  G    G  + A + L V+
Sbjct: 305 PTVVTYNTIMYGLCKWGRVSDARKLLDVM 333



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 74/387 (19%), Positives = 149/387 (38%), Gaps = 24/387 (6%)

Query: 305 RTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDS 364
           R  N  +A ++   M   G+ P+  TY+  + +      ++  +++L  MQ     P D 
Sbjct: 179 RDNNIDVAREVYNVMVECGICPTVVTYNTMLDSFCKKGMVQEALQLLFQMQAMGCSPNDV 238

Query: 365 TIATLSVECSKALELDLAEALLDQISRC---TNPKPFSAFLAACDTMDKPERAIKIFAKM 421
           T   L    S + E++ A+ L+  + R     +   +   +       + E A ++  +M
Sbjct: 239 TYNVLVNGLSHSGEMEQAKELIQDMLRLGLEVSVYTYDPLIRGYCEKGQIEEASRLGEEM 298

Query: 422 RQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISM 480
             +   P + TY  +  ++G           + +V  A+++  +   M   N+    +S 
Sbjct: 299 LSRGAVPTVVTYNTI--MYGLCK--------WGRVSDARKLLDV---MVNKNLMPDLVSY 345

Query: 481 KNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKT 537
             L+      G I E    F + +     P   TYNT++  L    +   AM +  +M  
Sbjct: 346 NTLIYGYTRLGNIGEAFLLFAELRYRSLAPSVVTYNTLIDGLCRLGDLDVAMRLKDEMIK 405

Query: 538 CGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDE 597
            G  P+  T+   +     +     A  L   M+  G  P    Y   I   L  GD  +
Sbjct: 406 HGPDPDVFTFTTFVRGFCKMGNLPMAKELFDEMLNRGLQPDRFAYITRIVGELKLGDPSK 465

Query: 598 ALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFS 657
           A  + + +   G P D++ YN  +    + G +     ++++M  N + PD    H  ++
Sbjct: 466 AFGMQEEMLARGFPPDLITYNVFIDGLHKLGNLKEASELVKKMLYNGLVPD----HVTYT 521

Query: 658 GYVNCGFHNSAMEALQVLSMRMLCEEV 684
             ++       +   + L + ML + +
Sbjct: 522 SIIHAHLMAGHLRKARALFLEMLSKGI 548


>gi|125542792|gb|EAY88931.1| hypothetical protein OsI_10416 [Oryza sativa Indica Group]
          Length = 796

 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 92/449 (20%), Positives = 170/449 (37%), Gaps = 69/449 (15%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ +++A  R    G A  L+ +M+  G+ P+  TY+  + A      ++   +V++ M
Sbjct: 245 TYNTLLNAHCRKGMLGEARALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESM 304

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDK 410
                +P   T   L++   +A ++D A  L D++ R     P    ++  + AC     
Sbjct: 305 TAYGFEPDLRTYNVLAMGLCQAGKVDEAFRLKDEMERLGTALPDVVTYNTLVDACFKWRC 364

Query: 411 PERAIKIFAKMRQK------------------------------------LRPDIRTYEL 434
              A+++  +MR K                                    L PD+ TY  
Sbjct: 365 SSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNT 424

Query: 435 LFSLF---GNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNI--QHSHISMKNLLKALGA 489
           L   +   GNV   +    M   V    +++   ++    N+     +   + LL +   
Sbjct: 425 LIDAYCKAGNVAKAFTL--MDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQ 482

Query: 490 EGMIRELIQY----------------------FCDSKTPLGTPTYNTVLHSLVEAQESHR 527
            G + + + Y                        + K      TYNT++  L   +    
Sbjct: 483 RGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNTLIKGLCRMERLKE 542

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A++   +    G+ P+  TYNI+I         ++A    + MV + F P  +T   L+ 
Sbjct: 543 AIDKLNEFVEKGLVPDETTYNIIIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMN 602

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
            L  +G  D+AL L +    +G   DV+ YNT+++  C+ G +D      + M    +QP
Sbjct: 603 GLCLHGKLDKALKLFESWVEKGKKVDVITYNTLIQSMCKVGDVDTALHFFDDMEVKGLQP 662

Query: 648 DPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
           D  T + V S     G    A   L  L+
Sbjct: 663 DAFTYNVVLSALSEAGRSEEAHNMLHKLA 691



 Score = 72.4 bits (176), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 84/371 (22%), Positives = 149/371 (40%), Gaps = 52/371 (14%)

Query: 322 LGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL-SVECSKALELD 380
           L L P+ +T++  +    S   L + +  L  MQ   L P   T  TL +  C K + L 
Sbjct: 202 LRLHPNHYTFNLLVHTHCSKGTLADALATLSTMQGFGLSPDAVTYNTLLNAHCRKGM-LG 260

Query: 381 LAEALLDQISR----CTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELL 435
            A ALL ++ R     T P  ++  ++A   +   ++A K+   M      PD+RTY +L
Sbjct: 261 EARALLARMKRDGIAPTQPT-YNTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVL 319

Query: 436 FSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRE 495
               G   A         +VD A R                   +K+ ++ LG    + +
Sbjct: 320 --AMGLCQA--------GKVDEAFR-------------------LKDEMERLGT--ALPD 348

Query: 496 LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCS 555
           ++             TYNT++ +  + + S  A+ + ++M+  G+ P   T+NI++    
Sbjct: 349 VV-------------TYNTLVDACFKWRCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLC 395

Query: 556 IIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVL 615
                + A   +  +  +G  P  +TY  LI      G+  +A  L+D +  +G+  D  
Sbjct: 396 KEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKGLKMDTF 455

Query: 616 LYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
             NT+L   C+  R +  E ++    Q    PD  +   V + Y        A+     +
Sbjct: 456 TLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQM 515

Query: 676 SMRMLCEEVST 686
             R L   +ST
Sbjct: 516 IERKLIPSIST 526



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 128/645 (19%), Positives = 243/645 (37%), Gaps = 115/645 (17%)

Query: 93  ILNYCARSPD--PLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGE 150
           +L+  +RSP   P   ++ +R + E  +  N+  + L++   C  G L +A   +  + +
Sbjct: 177 VLSALSRSPSTLPQASLDVFRSLIELRLHPNHYTFNLLVHTHCSKGTLADALATLSTM-Q 235

Query: 151 RYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLS 210
            +G+ P    YN+ L A  +   +  A   L  M    +   + TY  L           
Sbjct: 236 GFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKRDGIAPTQPTYNTL----------- 284

Query: 211 AVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYI-NRTSE 269
                                  V +F RL  +K A + ++ M A      L   N  + 
Sbjct: 285 -----------------------VSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAM 321

Query: 270 GRLRSSRLDIPIPL--------NALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQS 321
           G  ++ ++D    L         ALP +     +++ ++ AC + + S  A +L+ +M+ 
Sbjct: 322 GLCQAGKVDEAFRLKDEMERLGTALPDV----VTYNTLVDACFKWRCSSDALRLLEEMRD 377

Query: 322 LGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL-SVEC------- 373
            G++P+  T++  ++++  +  L   +  L+ + +  L P   T  TL    C       
Sbjct: 378 KGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAK 437

Query: 374 ---------SKALELDL------------------AEALL---DQISRCTNPKPFSAFLA 403
                     K L++D                   AE LL    Q     +   +   +A
Sbjct: 438 AFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMA 497

Query: 404 ACDTMDKPERAIKIFAKM-RQKLRPDIRTY----------ELLFSLFGNVNAPYEEGNMF 452
           A      PE A++++ +M  +KL P I TY          E L      +N   E+G + 
Sbjct: 498 AYFKEYNPEPALRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNEFVEKGLVP 557

Query: 453 SQVDSAKRINAI--EMD----------MARNNIQHSHISMKNLLKALGAEGMIRELIQYF 500
            +      I+A   E D          M  N+ +   ++   L+  L   G + + ++ F
Sbjct: 558 DETTYNIIIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKALKLF 617

Query: 501 ---CDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSII 557
               +    +   TYNT++ S+ +  +   A+  F  M+  G+ P+A TYN+++   S  
Sbjct: 618 ESWVEKGKKVDVITYNTLIQSMCKVGDVDTALHFFDDMEVKGLQPDAFTYNVVLSALSEA 677

Query: 558 RCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVL-L 616
              + A  ++  +   G   Q+     L     D  D  E     +  S E    + L  
Sbjct: 678 GRSEEAHNMLHKLADSGKLSQSFACPLLKPSSADEADVKEHEGKPEAESSEKAQDNALET 737

Query: 617 YNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVN 661
           Y   L   C  G++   + ++++M Q  +  D ST   +  G + 
Sbjct: 738 YMERLNGLCTGGQLKEAKAVLDEMMQKGMPVDCSTYITLMEGLIK 782


>gi|15234349|ref|NP_194530.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75208278|sp|Q9SUD8.1|PP340_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g28010
 gi|4455360|emb|CAB36770.1| putative protein [Arabidopsis thaliana]
 gi|7269655|emb|CAB79603.1| putative protein [Arabidopsis thaliana]
 gi|332660020|gb|AEE85420.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 704

 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 90/369 (24%), Positives = 166/369 (44%), Gaps = 34/369 (9%)

Query: 298 DVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQN 357
           D +   G+T+    A QL+  M     +P++ TY+  I  +  D  + + +E++++M++ 
Sbjct: 325 DGLCGVGKTKE---ALQLLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELMKKR 381

Query: 358 NLKPQDSTIATL-SVECSKALELDLAEALLDQI---SRCTNPK--PFSAFLAACDTMDKP 411
             +P + T   L    C+K  +LD A  LL  +   S  T+P    ++A +      ++ 
Sbjct: 382 RTRPDNITYNILLGGLCAKG-DLDEASKLLYLMLKDSSYTDPDVISYNALIHGLCKENRL 440

Query: 412 ERAIKIFAKMRQKLRPDIR--TYELLFSLF--GNVNAPYEEGNMFSQVDSAKRINAIEMD 467
            +A+ I+  + +KL    R  T  LL S    G+VN   E   ++ Q+  +K        
Sbjct: 441 HQALDIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKAME---LWKQISDSK-------- 489

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPT---YNTVLHSLVEAQE 524
           + RN+  ++      ++      GM+       C  +     P+   YN +L SL +   
Sbjct: 490 IVRNSDTYTA-----MIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGS 544

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
             +A  +F++M+     P+  ++NIMID        KSA +L+  M R G  P   TY+ 
Sbjct: 545 LDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPDLFTYSK 604

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
           LI   L  G  DEA++  D +   G   D  + +++LK    +G  D +  +++++    
Sbjct: 605 LINRFLKLGYLDEAISFFDKMVDSGFEPDAHICDSVLKYCISQGETDKLTELVKKLVDKD 664

Query: 645 VQPDPS-TC 652
           +  D   TC
Sbjct: 665 IVLDKELTC 673



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 67/270 (24%), Positives = 117/270 (43%), Gaps = 23/270 (8%)

Query: 413 RAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM--DMA 469
           +A+ +  +MR+  L PD+ +Y  +   F        EG    +        A+E+  +M 
Sbjct: 160 KAVSLLREMRRNSLMPDVFSYNTVIRGFC-------EGKELEK--------ALELANEMK 204

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSK---TPLGTPTYNTVLHSLVEAQESH 526
            +    S ++   L+ A    G + E + +  + K          Y +++    +  E  
Sbjct: 205 GSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELD 264

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
           R   +F ++   G  P A TYN +I     +   K AS +   M+  G  P   TYT LI
Sbjct: 265 RGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLI 324

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI-DVIEFIIEQMHQNKV 645
             L   G   EAL LL+L+  +    + + YN I+ K C+ G + D +E I+E M + + 
Sbjct: 325 DGLCGVGKTKEALQLLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVE-IVELMKKRRT 383

Query: 646 QPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
           +PD  T + +  G    G  + A + L ++
Sbjct: 384 RPDNITYNILLGGLCAKGDLDEASKLLYLM 413



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 75/365 (20%), Positives = 143/365 (39%), Gaps = 53/365 (14%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTI-ATLS 370
           A ++   M   G++P+ +TY G I  +      +  +++L +M + + +P   T    ++
Sbjct: 301 ASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMIEKDEEPNAVTYNIIIN 360

Query: 371 VECSKALELDLAEALLDQISRCTNPKPFS-----AFLAACDTMDKPERAIKIFAKMRQKL 425
             C   L  D  E +     R T P   +       L A   +D+  + + +  K     
Sbjct: 361 KLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLMLKDSSYT 420

Query: 426 RPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLL- 484
            PD+ +Y                             NA+   + + N  H  + + +LL 
Sbjct: 421 DPDVISY-----------------------------NALIHGLCKENRLHQALDIYDLLV 451

Query: 485 KALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNA 544
           + LGA   +                 T N +L+S ++A + ++AME++KQ+    I  N+
Sbjct: 452 EKLGAGDRV-----------------TTNILLNSTLKAGDVNKAMELWKQISDSKIVRNS 494

Query: 545 ATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDL 604
            TY  MID          A  L+  M      P    Y  L+  L   G  D+A  L + 
Sbjct: 495 DTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEE 554

Query: 605 VSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGF 664
           +  +    DV+ +N ++  + + G I   E ++  M +  + PD  T   + + ++  G+
Sbjct: 555 MQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPDLFTYSKLINRFLKLGY 614

Query: 665 HNSAM 669
            + A+
Sbjct: 615 LDEAI 619



 Score = 63.2 bits (152), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 67/144 (46%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TYNT++    +  +   A EIF+ M   G+ PN  TY  +ID    +   K A  L+++M
Sbjct: 284 TYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLM 343

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           +     P  +TY  +I  L   G   +A+ +++L+       D + YN +L   C KG +
Sbjct: 344 IEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDL 403

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHF 654
           D    ++  M ++    DP    +
Sbjct: 404 DEASKLLYLMLKDSSYTDPDVISY 427



 Score = 62.8 bits (151), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 79/395 (20%), Positives = 164/395 (41%), Gaps = 30/395 (7%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           S S ++    + + +G A  ++  M   G   + + ++  ++ +  +      + +L+ M
Sbjct: 109 SLSGLLECYVQMRKTGFAFGVLALMLKRGFAFNVYNHNILLKGLCRNLECGKAVSLLREM 168

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQI--SRCT-NPKPFSAFLAACDTMDKP 411
           ++N+L P   +  T+     +  EL+ A  L +++  S C+ +   +   + A     K 
Sbjct: 169 RRNSLMPDVFSYNTVIRGFCEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKM 228

Query: 412 ERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           + A+    +M+   L  D+  Y  L   F +         +F +V            + R
Sbjct: 229 DEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEV------------LER 276

Query: 471 NNIQHSHISMKNLLKALGAEGMIR---ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHR 527
            +     I+   L++     G ++   E+ ++  +        TY  ++  L    ++  
Sbjct: 277 GD-SPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKE 335

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A+++   M      PNA TYNI+I+          A  +V +M +    P  +TY  L+ 
Sbjct: 336 ALQLLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLG 395

Query: 588 ILLDYGDFDEALNLLDLVSLEG--IPHDVLLYNTILKKACEKGR----IDVIEFIIEQMH 641
            L   GD DEA  LL L+  +      DV+ YN ++   C++ R    +D+ + ++E++ 
Sbjct: 396 GLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGLCKENRLHQALDIYDLLVEKLG 455

Query: 642 QNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
                 D  T + + +  +  G  N AME  + +S
Sbjct: 456 AG----DRVTTNILLNSTLKAGDVNKAMELWKQIS 486



 Score = 43.1 bits (100), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 74/165 (44%), Gaps = 2/165 (1%)

Query: 55  TQMQIVDALCRGERSRASHLLLNLG-HAHHSLGADDFFHILNYCARSPDPLFVMETWRMM 113
           T   ++D LC   +++ +  LLNL         A  +  I+N   +       +E   +M
Sbjct: 319 TYTGLIDGLCGVGKTKEALQLLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELM 378

Query: 114 EEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYF-LGERYGIYPILPVYNSFLGACAKLH 172
           +++    +N  Y +++  LC  G L+EAS L+Y  L +     P +  YN+ +    K +
Sbjct: 379 KKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGLCKEN 438

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWE 217
            +  A    DL+  ++   + VT   LL   +   +++   E+W+
Sbjct: 439 RLHQALDIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKAMELWK 483



 Score = 42.4 bits (98), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 71/332 (21%), Positives = 135/332 (40%), Gaps = 12/332 (3%)

Query: 108 ETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGA 167
           E +  M E+ +  N   Y  ++  LC  G  +EA  L+  + E+    P    YN  +  
Sbjct: 303 EIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMIEK-DEEPNAVTYNIIINK 361

Query: 168 CAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLS- 226
             K   +  A   ++LM  R    + +TY  LL     + +L    ++    +K  S + 
Sbjct: 362 LCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLMLKDSSYTD 421

Query: 227 --IFSLRKFVWSFTRLRDLKSAYETLQHMV-ALAMMGKLYINRTSEGRLRSSRLDIPIPL 283
             + S    +    +   L  A +    +V  L    ++  N      L++  ++  + L
Sbjct: 422 PDVISYNALIHGLCKENRLHQALDIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKAMEL 481

Query: 284 -NALPVMKVLRWS--FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVS 340
              +   K++R S  ++ +I    +T    +A+ L+ +M+   LQPS   Y+  + ++  
Sbjct: 482 WKQISDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCK 541

Query: 341 DRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT-NPKPF- 398
           +  L     + + MQ++N  P   +   +     KA ++  AE+LL  +SR   +P  F 
Sbjct: 542 EGSLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPDLFT 601

Query: 399 -SAFLAACDTMDKPERAIKIFAKM-RQKLRPD 428
            S  +     +   + AI  F KM      PD
Sbjct: 602 YSKLINRFLKLGYLDEAISFFDKMVDSGFEPD 633


>gi|302757477|ref|XP_002962162.1| hypothetical protein SELMODRAFT_76220 [Selaginella moellendorffii]
 gi|300170821|gb|EFJ37422.1| hypothetical protein SELMODRAFT_76220 [Selaginella moellendorffii]
          Length = 484

 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 88/380 (23%), Positives = 156/380 (41%), Gaps = 24/380 (6%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           +SF+ +I      +N G A + +  M+SLG+ P    Y+  ++    D G R G  ++K 
Sbjct: 80  YSFTIIIQCFCNVRNPGRAWRYLGYMRSLGIPPDVTAYNVVLKGY-CDLG-RVGRALIKF 137

Query: 354 MQQN-NLKPQDSTIATLSVECSKALELDLAEALLDQISR-CTNPKPF--SAFLAACDTMD 409
            +     KP  +T  T+     K  ++D A  L  ++     +P  F  S  +      +
Sbjct: 138 GKMGKTCKPNVATYNTVINGLCKFGKIDWAVHLFTRLPHDLVDPDGFTYSTLVHGLCQAE 197

Query: 410 KPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
           + E AIK++  M +        Y+      G+  A     + F +         +   M 
Sbjct: 198 RLEAAIKVYDMMLEA------NYD------GDAGAYNAMADGFCKERRVDEALEVLKTMI 245

Query: 470 RNNIQHSHISMKNLLKALGA-EGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQES 525
           +   + S ++   ++  +   +  I E   L Q    S  P    TY T++  L +  E 
Sbjct: 246 QRGCKPSVVTYNCIINGVCQYKNRIEEAYRLFQQMVGSDCPPNAVTYGTMILGLSKIYEV 305

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
            R +E+FK M   G+ P+   Y+ +I     +R    A +++    R+   P    YT L
Sbjct: 306 QRCLELFKGMSKAGLSPDGYAYHSLIYAFVKVRKLDEAKSILQDAARNHVGPDVYMYTTL 365

Query: 586 IKILLDYGD--FDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
           I           DEAL L   +    +  +V+ YN +L+  C+ GR D    I ++M + 
Sbjct: 366 ISGYCRARKPRVDEALLLFQNMKDRRVWPNVITYNIVLRGLCKTGRFDEAYQIFQEMFKV 425

Query: 644 KVQPDPSTCHFVFSGYVNCG 663
           K  P+  T   +  G ++CG
Sbjct: 426 KCSPNRMTFKVMTMGMIHCG 445



 Score = 60.1 bits (144), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 82/197 (41%), Gaps = 21/197 (10%)

Query: 496 LIQYFCDSKTP------------LGTP----TYNTVLHSLVEAQESHRAMEIFKQM-KTC 538
           +IQ FC+ + P            LG P     YN VL    +     RA+  F +M KTC
Sbjct: 85  IIQCFCNVRNPGRAWRYLGYMRSLGIPPDVTAYNVVLKGYCDLGRVGRALIKFGKMGKTC 144

Query: 539 GIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEA 598
              PN ATYN +I+          A  L + +  D   P   TY+ L+  L      + A
Sbjct: 145 --KPNVATYNTVINGLCKFGKIDWAVHLFTRLPHDLVDPDGFTYSTLVHGLCQAERLEAA 202

Query: 599 LNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
           + + D++       D   YN +    C++ R+D    +++ M Q   +P   T + + +G
Sbjct: 203 IKVYDMMLEANYDGDAGAYNAMADGFCKERRVDEALEVLKTMIQRGCKPSVVTYNCIING 262

Query: 659 YVNCGFHNSAMEALQVL 675
              C + N   EA ++ 
Sbjct: 263 V--CQYKNRIEEAYRLF 277



 Score = 55.8 bits (133), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 60/140 (42%), Gaps = 1/140 (0%)

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           Y  +LH LV A+ +  A+  FK+       P+  ++ I+I C   +R    A   +  M 
Sbjct: 47  YTRLLHHLVRARRTREAVRFFKRELCAHCRPSLYSFTIIIQCFCNVRNPGRAWRYLGYMR 106

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
             G  P    Y  ++K   D G    AL     +     P +V  YNT++   C+ G+ID
Sbjct: 107 SLGIPPDVTAYNVVLKGYCDLGRVGRALIKFGKMGKTCKP-NVATYNTVINGLCKFGKID 165

Query: 632 VIEFIIEQMHQNKVQPDPST 651
               +  ++  + V PD  T
Sbjct: 166 WAVHLFTRLPHDLVDPDGFT 185



 Score = 52.8 bits (125), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 54/246 (21%), Positives = 100/246 (40%), Gaps = 17/246 (6%)

Query: 410 KPERAIKIFAK-MRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
           +   A++ F + +    RP + ++ ++   F NV  P         + S      I  D+
Sbjct: 59  RTREAVRFFKRELCAHCRPSLYSFTIIIQCFCNVRNPGRAWRYLGYMRSL----GIPPDV 114

Query: 469 ARNNIQHSHISMKNLLKALGAEGMI-RELIQYFCDSKT-PLGTPTYNTVLHSLVEAQESH 526
              N+         +LK     G + R LI++    KT      TYNTV++ L +  +  
Sbjct: 115 TAYNV---------VLKGYCDLGRVGRALIKFGKMGKTCKPNVATYNTVINGLCKFGKID 165

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
            A+ +F ++    + P+  TY+ ++         ++A  +  MM+   +      Y A+ 
Sbjct: 166 WAVHLFTRLPHDLVDPDGFTYSTLVHGLCQAERLEAAIKVYDMMLEANYDGDAGAYNAMA 225

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE-KGRIDVIEFIIEQMHQNKV 645
                    DEAL +L  +   G    V+ YN I+   C+ K RI+    + +QM  +  
Sbjct: 226 DGFCKERRVDEALEVLKTMIQRGCKPSVVTYNCIINGVCQYKNRIEEAYRLFQQMVGSDC 285

Query: 646 QPDPST 651
            P+  T
Sbjct: 286 PPNAVT 291



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 62/279 (22%), Positives = 105/279 (37%), Gaps = 25/279 (8%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           +++S ++H   + +    A ++   M        +  Y+        +R +   +EVLK 
Sbjct: 184 FTYSTLVHGLCQAERLEAAIKVYDMMLEANYDGDAGAYNAMADGFCKERRVDEALEVLKT 243

Query: 354 MQQNNLKPQDSTI-ATLSVECSKALELDLAEALLDQI--SRC-TNPKPFSAFLAACDTMD 409
           M Q   KP   T    ++  C     ++ A  L  Q+  S C  N   +   +     + 
Sbjct: 244 MIQRGCKPSVVTYNCIINGVCQYKNRIEEAYRLFQQMVGSDCPPNAVTYGTMILGLSKIY 303

Query: 410 KPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
           + +R +++F  M +  L PD   Y  L   F  V           ++D AK   +I  D 
Sbjct: 304 EVQRCLELFKGMSKAGLSPDGYAYHSLIYAFVKVR----------KLDEAK---SILQDA 350

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRE-----LIQYFCDSKTPLGTPTYNTVLHSLVEAQ 523
           ARN++         L+         R      L Q   D +      TYN VL  L +  
Sbjct: 351 ARNHVGPDVYMYTTLISGYCRARKPRVDEALLLFQNMKDRRVWPNVITYNIVLRGLCKTG 410

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKS 562
               A +IF++M      PN  T+ +M     +I C K+
Sbjct: 411 RFDEAYQIFQEMFKVKCSPNRMTFKVMT--MGMIHCGKT 447



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/210 (20%), Positives = 83/210 (39%), Gaps = 8/210 (3%)

Query: 474 QHSHISMKNLLKALGAEGMIRELIQYF----CDSKTPLGTPTYNTVLHSLVEAQESHRAM 529
           +H       LL  L      RE +++F    C    P    ++  ++      +   RA 
Sbjct: 41  RHDVYCYTRLLHHLVRARRTREAVRFFKRELCAHCRP-SLYSFTIIIQCFCNVRNPGRAW 99

Query: 530 EIFKQMKTCGIPPNAATYNIMIDC-CSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
                M++ GIPP+   YN+++   C + R  ++      M       P   TY  +I  
Sbjct: 100 RYLGYMRSLGIPPDVTAYNVVLKGYCDLGRVGRALIKFGKMG--KTCKPNVATYNTVING 157

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
           L  +G  D A++L   +  + +  D   Y+T++   C+  R++    + + M +     D
Sbjct: 158 LCKFGKIDWAVHLFTRLPHDLVDPDGFTYSTLVHGLCQAERLEAAIKVYDMMLEANYDGD 217

Query: 649 PSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678
               + +  G+      + A+E L+ +  R
Sbjct: 218 AGAYNAMADGFCKERRVDEALEVLKTMIQR 247



 Score = 50.1 bits (118), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 55/291 (18%), Positives = 108/291 (37%), Gaps = 23/291 (7%)

Query: 392 CTNPKP----FSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPY 446
           C + +P    F+  +     +  P RA +    MR   + PD+  Y ++   + ++    
Sbjct: 72  CAHCRPSLYSFTIIIQCFCNVRNPGRAWRYLGYMRSLGIPPDVTAYNVVLKGYCDLGRVG 131

Query: 447 EEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTP 506
                F ++    + N                +   ++  L   G I   +  F      
Sbjct: 132 RALIKFGKMGKTCKPNVA--------------TYNTVINGLCKFGKIDWAVHLFTRLPHD 177

Query: 507 LGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSA 563
           L  P   TY+T++H L +A+    A++++  M       +A  YN M D     R    A
Sbjct: 178 LVDPDGFTYSTLVHGLCQAERLEAAIKVYDMMLEANYDGDAGAYNAMADGFCKERRVDEA 237

Query: 564 SALVSMMVRDGFYPQTMTYTALIKILLDYGD-FDEALNLLDLVSLEGIPHDVLLYNTILK 622
             ++  M++ G  P  +TY  +I  +  Y +  +EA  L   +     P + + Y T++ 
Sbjct: 238 LEVLKTMIQRGCKPSVVTYNCIINGVCQYKNRIEEAYRLFQQMVGSDCPPNAVTYGTMIL 297

Query: 623 KACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
              +   +     + + M +  + PD    H +   +V     + A   LQ
Sbjct: 298 GLSKIYEVQRCLELFKGMSKAGLSPDGYAYHSLIYAFVKVRKLDEAKSILQ 348


>gi|152717462|dbj|BAF73723.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 128/621 (20%), Positives = 245/621 (39%), Gaps = 50/621 (8%)

Query: 89  DFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFL 148
           DF  ++    R   P  V+  ++ ME K+I  +   + ++++  C    L  A +    +
Sbjct: 81  DFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKI 140

Query: 149 GERYGIYPILPVYNSFL-GACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQK 207
             + G++P +  +N+ L G C +       NL   + ++     N VT+T L+     + 
Sbjct: 141 -TKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETT-CRPNVVTFTTLMNGLCREG 198

Query: 208 NL----SAVHEIWEDYIK----HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMM 259
            +    + +  + ED ++     Y   +  + K   + + L DL    E + H++   ++
Sbjct: 199 RIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKIGDTVSAL-DLLRKMEEISHIIPNVVI 257

Query: 260 GKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQM 319
               I+   +    S   ++   +    +   L    S ++  C   + S  AEQL+ +M
Sbjct: 258 YSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSD-AEQLLQEM 316

Query: 320 QSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALEL 379
               + P   TY+  I A V +       E+   M    + P   T +++     K   L
Sbjct: 317 LERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRL 376

Query: 380 DLAEAL--LDQISRCT-NPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELL 435
           D AE +  L     C+ N   F+  +       + +  +++  +M +  L  D  TY  L
Sbjct: 377 DAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTL 436

Query: 436 ---FSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGM 492
              F L G++NA  +                +  +M  + +    ++   LL  L   G 
Sbjct: 437 IHGFYLVGDLNAALD----------------LLQEMISSGLCPDIVTCDTLLDGLCDNGK 480

Query: 493 IRELIQYF---------CDSKTPLG-----TPTYNTVLHSLVEAQESHRAMEIFKQMKTC 538
           +++ ++ F          D+  P         TYN ++  L+   +   A E++++M   
Sbjct: 481 LKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHR 540

Query: 539 GIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEA 598
           GI P+  TY+ MID          A+ +   M    F P  +T+T LI      G  D+ 
Sbjct: 541 GIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDG 600

Query: 599 LNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
           L L   +   GI  + + Y T++    + G I+    I ++M  + V PD  T   + +G
Sbjct: 601 LELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTG 660

Query: 659 YVNCGFHNSAMEALQVLSMRM 679
             +      A+  L+ L M M
Sbjct: 661 LWSKEELKRAVAMLEKLQMSM 681



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 94/412 (22%), Positives = 168/412 (40%), Gaps = 34/412 (8%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +F+ ++H          A  L  QM     +P+  T+   +  +  +  +   + +L  M
Sbjct: 151 TFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRM 210

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP-FSAFLAACDTMDKPER 413
            ++ L+P   T  T+     K  +   A  LL ++   ++  P    + A  D++ K  R
Sbjct: 211 MEDGLQPTQITYGTIVDGMCKIGDTVSALDLLRKMEEISHIIPNVVIYSAIIDSLCKDGR 270

Query: 414 ---AIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
              A  +F +M++K + PD+ TY  +   F + +  + +     Q            +M 
Sbjct: 271 HSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCS-SGRWSDAEQLLQ------------EML 317

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLG----TPTYNTVLHSLVEAQES 525
              I    ++   L+ A   EG   E  + + D   P G    T TY++++    +    
Sbjct: 318 ERKISPDVVTYNALINAFVKEGKFFEAEELY-DEMLPRGIIPNTITYSSMIDGFCKQNRL 376

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
             A  +F  M T G  PN  T+N +ID     +       L+  M   G    T TY  L
Sbjct: 377 DAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTL 436

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI-DVIE-FIIEQMHQ- 642
           I      GD + AL+LL  +   G+  D++  +T+L   C+ G++ D +E F + Q  + 
Sbjct: 437 IHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKK 496

Query: 643 --------NKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
                   N V+PD  T + + SG +N G    A E  + +  R +  +  T
Sbjct: 497 DLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTIT 548



 Score = 69.7 bits (169), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 86/431 (19%), Positives = 168/431 (38%), Gaps = 65/431 (15%)

Query: 272 LRSSRLDIPIPLNALPVMKVLR---WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSS 328
           +R  R D+ I L      K +R   +SF+ +I           A     ++  LGL P  
Sbjct: 90  VRMERPDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDV 149

Query: 329 HTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ 388
            T++  +  +  +  +   + +   M +   +P   T  TL     +   +  A ALLD+
Sbjct: 150 VTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDR 209

Query: 389 ISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEE 448
           +                               M   L+P   TY  +      V+   + 
Sbjct: 210 M-------------------------------MEDGLQPTQITYGTI------VDGMCKI 232

Query: 449 GNMFSQVDSAKRINAIEMDMARNNIQHS-----------HISMKNLLKALGAEGMIRELI 497
           G+  S +D  +++  I   +  N + +S           H   +NL   +  +G+  +L 
Sbjct: 233 GDTVSALDLLRKMEEIS-HIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLF 291

Query: 498 QYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSII 557
                        TYN+++     +     A ++ ++M    I P+  TYN +I+     
Sbjct: 292 -------------TYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKE 338

Query: 558 RCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLY 617
             F  A  L   M+  G  P T+TY+++I         D A ++  L++ +G   +++ +
Sbjct: 339 GKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITF 398

Query: 618 NTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSM 677
           NT++   C   RID    ++ +M +  +  D +T + +  G+   G  N+A++ LQ +  
Sbjct: 399 NTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMIS 458

Query: 678 RMLCEEVSTLE 688
             LC ++ T +
Sbjct: 459 SGLCPDIVTCD 469


>gi|22135795|gb|AAM91084.1| AT4g28010/T13J8_120 [Arabidopsis thaliana]
          Length = 704

 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 88/369 (23%), Positives = 166/369 (44%), Gaps = 34/369 (9%)

Query: 298 DVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQN 357
           D +   G+T+ +     LM++      +P++ TY+  I  +  D  + + +E++++M++ 
Sbjct: 325 DGLCGVGKTKEALQPLNLMIEKDE---EPNAVTYNIIINKLCKDGLVADAVEIVELMKKR 381

Query: 358 NLKPQDSTIATL-SVECSKALELDLAEALLDQI---SRCTNPK--PFSAFLAACDTMDKP 411
             +P + T   L    C+K  +LD A  LL  +   S  T+P    ++A +      ++ 
Sbjct: 382 RTRPDNITYNILLGGLCAKG-DLDEASKLLYLMLKDSSYTDPDVISYNALIHGLCKENRL 440

Query: 412 ERAIKIFAKMRQKLRPDIR--TYELLFSLF--GNVNAPYEEGNMFSQVDSAKRINAIEMD 467
            +A+ I+  + +KL    R  T  LL S    G+VN   E   ++ Q+  +K        
Sbjct: 441 HQALDIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKAME---LWKQISDSK-------- 489

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPT---YNTVLHSLVEAQE 524
           + RN+  ++      ++      GM+       C  +     P+   YN +L SL +   
Sbjct: 490 IVRNSDTYTA-----MIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGS 544

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
             +A  +F++M+     P+  ++NIMID        KSA +L+  M R G  P   TY+ 
Sbjct: 545 LDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPDLFTYSK 604

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
           LI   L  G  DEA++  D +   G   D  + +++LK    +G  D +  +++++    
Sbjct: 605 LINRFLKLGYLDEAISFFDKMVDSGFEPDAHICDSVLKYCISQGETDKLTELVKKLVDKD 664

Query: 645 VQPDPS-TC 652
           +  D   TC
Sbjct: 665 IVLDKELTC 673



 Score = 71.6 bits (174), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 66/270 (24%), Positives = 116/270 (42%), Gaps = 23/270 (8%)

Query: 413 RAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM--DMA 469
           +A+ +  +MR+  L PD+ +Y  +   F        EG    +        A+E+  +M 
Sbjct: 160 KAVSLLREMRRNSLMPDVFSYNTVIRGFC-------EGKELEK--------ALELANEMK 204

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSK---TPLGTPTYNTVLHSLVEAQESH 526
            +    S ++   L+ A    G + E + +  + K          Y +++    +  E  
Sbjct: 205 GSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELD 264

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
           R   +F ++   G  P A TYN +I     +   K AS +   M+  G  P   TYT LI
Sbjct: 265 RGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLI 324

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI-DVIEFIIEQMHQNKV 645
             L   G   EAL  L+L+  +    + + YN I+ K C+ G + D +E I+E M + + 
Sbjct: 325 DGLCGVGKTKEALQPLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVE-IVELMKKRRT 383

Query: 646 QPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
           +PD  T + +  G    G  + A + L ++
Sbjct: 384 RPDNITYNILLGGLCAKGDLDEASKLLYLM 413



 Score = 70.9 bits (172), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 90/204 (44%), Gaps = 1/204 (0%)

Query: 472 NIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEI 531
           N+ + +I +K L + L     +  L +   +S  P    +YNTV+    E +E  +A+E+
Sbjct: 141 NVYNHNILLKGLCRNLECGKAVSLLREMRRNSLMP-DVFSYNTVIRGFCEGKELEKALEL 199

Query: 532 FKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLD 591
             +MK  G   +  T+ I+ID          A   +  M   G     + YT+LI+   D
Sbjct: 200 ANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCD 259

Query: 592 YGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
            G+ D    L D V   G     + YNT+++  C+ G++     I E M +  V+P+  T
Sbjct: 260 CGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYT 319

Query: 652 CHFVFSGYVNCGFHNSAMEALQVL 675
              +  G    G    A++ L ++
Sbjct: 320 YTGLIDGLCGVGKTKEALQPLNLM 343



 Score = 68.9 bits (167), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 75/365 (20%), Positives = 142/365 (38%), Gaps = 53/365 (14%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTI-ATLS 370
           A ++   M   G++P+ +TY G I  +      +  ++ L +M + + +P   T    ++
Sbjct: 301 ASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQPLNLMIEKDEEPNAVTYNIIIN 360

Query: 371 VECSKALELDLAEALLDQISRCTNPKPFS-----AFLAACDTMDKPERAIKIFAKMRQKL 425
             C   L  D  E +     R T P   +       L A   +D+  + + +  K     
Sbjct: 361 KLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLMLKDSSYT 420

Query: 426 RPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLL- 484
            PD+ +Y                             NA+   + + N  H  + + +LL 
Sbjct: 421 DPDVISY-----------------------------NALIHGLCKENRLHQALDIYDLLV 451

Query: 485 KALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNA 544
           + LGA   +                 T N +L+S ++A + ++AME++KQ+    I  N+
Sbjct: 452 EKLGAGDRV-----------------TTNILLNSTLKAGDVNKAMELWKQISDSKIVRNS 494

Query: 545 ATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDL 604
            TY  MID          A  L+  M      P    Y  L+  L   G  D+A  L + 
Sbjct: 495 DTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEE 554

Query: 605 VSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGF 664
           +  +    DV+ +N ++  + + G I   E ++  M +  + PD  T   + + ++  G+
Sbjct: 555 MQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPDLFTYSKLINRFLKLGY 614

Query: 665 HNSAM 669
            + A+
Sbjct: 615 LDEAI 619



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 79/395 (20%), Positives = 163/395 (41%), Gaps = 30/395 (7%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           S S ++    + + +G A  ++  M   G   + + ++  ++ +  +      + +L+ M
Sbjct: 109 SLSGLLECYVQMRKTGFAFGVLALMLKRGFAFNVYNHNILLKGLCRNLECGKAVSLLREM 168

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQI--SRCT-NPKPFSAFLAACDTMDKP 411
           ++N+L P   +  T+     +  EL+ A  L +++  S C+ +   +   + A     K 
Sbjct: 169 RRNSLMPDVFSYNTVIRGFCEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKM 228

Query: 412 ERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           + A+    +M+   L  D+  Y  L   F +         +F +V            + R
Sbjct: 229 DEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEV------------LER 276

Query: 471 NNIQHSHISMKNLLKALGAEGMIR---ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHR 527
            +     I+   L++     G ++   E+ ++  +        TY  ++  L    ++  
Sbjct: 277 GD-SPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKE 335

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A++    M      PNA TYNI+I+          A  +V +M +    P  +TY  L+ 
Sbjct: 336 ALQPLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLG 395

Query: 588 ILLDYGDFDEALNLLDLVSLEG--IPHDVLLYNTILKKACEKGR----IDVIEFIIEQMH 641
            L   GD DEA  LL L+  +      DV+ YN ++   C++ R    +D+ + ++E++ 
Sbjct: 396 GLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGLCKENRLHQALDIYDLLVEKLG 455

Query: 642 QNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
                 D  T + + +  +  G  N AME  + +S
Sbjct: 456 AG----DRVTTNILLNSTLKAGDVNKAMELWKQIS 486



 Score = 41.6 bits (96), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 74/350 (21%), Positives = 138/350 (39%), Gaps = 47/350 (13%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFL-GAC--------------- 168
           Y  +++  CK G L+EAS +  F+ ER G+ P +  Y   + G C               
Sbjct: 285 YNTLIRGFCKLGQLKEASEIFEFMIER-GVRPNVYTYTGLIDGLCGVGKTKEALQPLNLM 343

Query: 169 --------AKLHSMVHANLCLD-----------LMDSRMVGKNEVTYTELLKLAVWQKNL 209
                   A  ++++   LC D           LM  R    + +TY  LL     + +L
Sbjct: 344 IEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDL 403

Query: 210 SAVHEIWEDYIKHYSLS---IFSLRKFVWSFTRLRDLKSAYETLQHMV-ALAMMGKLYIN 265
               ++    +K  S +   + S    +    +   L  A +    +V  L    ++  N
Sbjct: 404 DEASKLLYLMLKDSSYTDPDVISYNALIHGLCKENRLHQALDIYDLLVEKLGAGDRVTTN 463

Query: 266 RTSEGRLRSSRLDIPIPL-NALPVMKVLRWS--FSDVIHACGRTQNSGLAEQLMLQMQSL 322
                 L++  ++  + L   +   K++R S  ++ +I    +T    +A+ L+ +M+  
Sbjct: 464 ILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVS 523

Query: 323 GLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLA 382
            LQPS   Y+  + ++  +  L     + + MQ++N  P   +   +     KA ++  A
Sbjct: 524 ELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSA 583

Query: 383 EALLDQISRCT-NPKPF--SAFLAACDTMDKPERAIKIFAKM-RQKLRPD 428
           E+LL  +SR   +P  F  S  +     +   + AI  F KM      PD
Sbjct: 584 ESLLVGMSRAGLSPDLFTYSKLINRFLKLGYLDEAISFFDKMVDSGFEPD 633



 Score = 40.4 bits (93), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 73/165 (44%), Gaps = 2/165 (1%)

Query: 55  TQMQIVDALCRGERSRASHLLLNLG-HAHHSLGADDFFHILNYCARSPDPLFVMETWRMM 113
           T   ++D LC   +++ +   LNL         A  +  I+N   +       +E   +M
Sbjct: 319 TYTGLIDGLCGVGKTKEALQPLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELM 378

Query: 114 EEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYF-LGERYGIYPILPVYNSFLGACAKLH 172
           +++    +N  Y +++  LC  G L+EAS L+Y  L +     P +  YN+ +    K +
Sbjct: 379 KKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGLCKEN 438

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWE 217
            +  A    DL+  ++   + VT   LL   +   +++   E+W+
Sbjct: 439 RLHQALDIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKAMELWK 483


>gi|449523013|ref|XP_004168519.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41720-like, partial [Cucumis sativus]
          Length = 594

 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 78/372 (20%), Positives = 151/372 (40%), Gaps = 51/372 (13%)

Query: 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
           R +F+++I+ACG   N   A ++  +M   G+ P   T++  + A  S       +   +
Sbjct: 5   RSTFNNLINACGSCGNWREALRVCKKMTDNGVGPDLVTHNIVLSAYKSGAQYSKALSYFE 64

Query: 353 IMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPE 412
           +M+  N++P D+T   + + C   ++                               +  
Sbjct: 65  LMKGTNIRP-DTTTLNIVIHCLIKVK-------------------------------QYG 92

Query: 413 RAIKIFAKMRQK---LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
           +AI+IF+ MR+K    RPD+ T+  +  L+          ++  Q++  K   A+   M 
Sbjct: 93  QAIEIFSSMREKRSECRPDVVTFTSIIHLY----------SVRGQIEDCK---AVFSTML 139

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESH 526
              I+ + +S   L+ A  + GM +E    F + K     P   +Y +++ +   +Q+  
Sbjct: 140 AEGIKPNIVSYNALISAYASHGMDKEAFSVFDEMKRSGFCPDVVSYTSLISTFGRSQQPA 199

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
           RA E+F  MK     PN  +YN ++D          A  ++  M +DG +P  ++   L+
Sbjct: 200 RAREVFDMMKRNKCKPNLVSYNALMDAYGSNGYLPQAVDILREMEQDGIHPNVVSICTLL 259

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
                +G      ++L    L GI  + +  N+ +      G  +    +   M     +
Sbjct: 260 AACGRFGQKVNIDSVLSAAELRGIHLNTIACNSAIGSYMNIGEYEKAINLYRSMENKTTK 319

Query: 647 PDPSTCHFVFSG 658
           PD  T   + SG
Sbjct: 320 PDSVTFTILISG 331



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 81/401 (20%), Positives = 174/401 (43%), Gaps = 35/401 (8%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           S++ +I   GR+Q    A ++   M+    +P+  +Y+  + A  S+  L   +++L+ M
Sbjct: 184 SYTSLISTFGRSQQPARAREVFDMMKRNKCKPNLVSYNALMDAYGSNGYLPQAVDILREM 243

Query: 355 QQNNLKPQDSTIATLSVECSK---ALELD--LAEALLDQISRCTNPKPFSAFLAACDTMD 409
           +Q+ + P   +I TL   C +    + +D  L+ A L  I    N    ++ + +   + 
Sbjct: 244 EQDGIHPNVVSICTLLAACGRFGQKVNIDSVLSAAELRGIH--LNTIACNSAIGSYMNIG 301

Query: 410 KPERAIKIFAKMRQKL-RPDIRTYELLFSLFGNVNAPYEEGNMF------------SQVD 456
           + E+AI ++  M  K  +PD  T+ +L S    + + YEE   F            S++ 
Sbjct: 302 EYEKAINLYRSMENKTTKPDSVTFTILISGCCRM-SKYEEALCFFKEMLDLRIPLSSEIY 360

Query: 457 SA------KRINAIEMDMARNNIQHSH-----ISMKNLLKALGAEGM---IRELIQYFCD 502
           S+      K+   ++ +   N+++ S      ++   ++ A  A  M   +  L Q    
Sbjct: 361 SSMICAYSKQGQLVKAESLFNSLKGSGCCPDLVTYTAMINAYSASEMWEKVCALYQEMEA 420

Query: 503 SKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKS 562
           +   L +   + ++ +  +  ++   + + + MK  GIP N A +  M+  CSI+R ++ 
Sbjct: 421 NNIQLDSIACSALMKAFNKGNQASNVLILAEIMKEKGIPFNDANFFEMLSACSILRDWRK 480

Query: 563 ASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILK 622
           A+ L+++M          T   L++ L   G  +  + L       G   ++  Y+ +LK
Sbjct: 481 ATDLINLMEPSFHLVSLGTINHLLQFLGKSGKTEIMIKLFYRFVALGSSVNINTYSILLK 540

Query: 623 KACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
                G+      +++ M+   +QP  +  + +     +CG
Sbjct: 541 NLLSAGKWRKYIEVLQWMNDAGIQPSHAMYNNILFFAQHCG 581



 Score = 46.2 bits (108), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 36/192 (18%), Positives = 78/192 (40%), Gaps = 4/192 (2%)

Query: 506 PLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASA 565
           P    T+N ++++         A+ + K+M   G+ P+  T+NI++        +  A +
Sbjct: 2   PPSRSTFNNLINACGSCGNWREALRVCKKMTDNGVGPDLVTHNIVLSAYKSGAQYSKALS 61

Query: 566 LVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVS---LEGIPHDVLLYNTILK 622
              +M      P T T   +I  L+    + +A+ +   +     E  P DV+ + +I+ 
Sbjct: 62  YFELMKGTNIRPDTTTLNIVIHCLIKVKQYGQAIEIFSSMREKRSECRP-DVVTFTSIIH 120

Query: 623 KACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCE 682
               +G+I+  + +   M    ++P+  + + + S Y + G    A      +     C 
Sbjct: 121 LYSVRGQIEDCKAVFSTMLAEGIKPNIVSYNALISAYASHGMDKEAFSVFDEMKRSGFCP 180

Query: 683 EVSTLEEKRSDF 694
           +V +     S F
Sbjct: 181 DVVSYTSLISTF 192


>gi|357150350|ref|XP_003575429.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g16890, mitochondrial-like [Brachypodium distachyon]
          Length = 684

 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 89/433 (20%), Positives = 181/433 (41%), Gaps = 30/433 (6%)

Query: 230 LRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYI-NRTSEGRLRSSRLDIP-IPLNALP 287
           LR  + S+ RL   + A+E    M  L +     + N      +R+  +D   +    +P
Sbjct: 144 LRALIASWGRLGLAQYAHEVFVQMPRLGLRPSTAVYNALIVASVRAGAVDTAYLRFQQMP 203

Query: 288 VMKVLR--WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLR 345
                   ++++ ++H   +      A +L+ QM+  G++P+  TY   +    +     
Sbjct: 204 ADGCQPDCFTYNTLVHGVCQRGIIDEALRLVRQMEGAGIRPNVFTYTMLVDGFCNAGRPE 263

Query: 346 NGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAAC 405
           + + V   M++  + P +++  TL     + L    A  +L +      P   SA+    
Sbjct: 264 DAVHVFDTMKEKGVSPNEASYRTLVHGAFRCLGRHKAYVMLTEWLGREPPPHHSAWQCML 323

Query: 406 DTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQV-----DSAKR 460
             + K E A ++    ++    + R Y L  ++FG V +   +    S +     D  K+
Sbjct: 324 YCLSKNEMAKEVVEVTKKM---NSRGYLLDNAIFGIVVSCAVKCLELSDLCGLLDDFVKK 380

Query: 461 INAIEMDMARNNIQ-----HSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTV 515
                 D+    I+      S     + LK +  +G++              G  +YN V
Sbjct: 381 GGNPGFDVYIMVIKSLLGCKSSSKANHYLKRMVLDGLLS-------------GVTSYNMV 427

Query: 516 LHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGF 575
           +   V+A    +A EI K+M+  G+ PN  T+N +I   S +    +A A++ M++  G 
Sbjct: 428 IDCFVKAGAVDKAAEIIKEMREKGVLPNLVTFNTLISGYSKLGNVHNAKAVLKMLMEHGL 487

Query: 576 YPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEF 635
            P  +T+T+LI  L      D+A +  + ++  G+  +   YN ++   C  G ++    
Sbjct: 488 IPDIITFTSLINGLCHTHQLDDAFDCFNEMAEWGVRPNAHTYNVLMHALCSAGHVNKAID 547

Query: 636 IIEQMHQNKVQPD 648
           ++ +M ++ + PD
Sbjct: 548 LLNKMKKDGITPD 560



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 83/391 (21%), Positives = 157/391 (40%), Gaps = 45/391 (11%)

Query: 299 VIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNN 358
           +I + GR   +  A ++ +QM  LGL+PS+  Y+  I A V    +       + M  + 
Sbjct: 147 LIASWGRLGLAQYAHEVFVQMPRLGLRPSTAVYNALIVASVRAGAVDTAYLRFQQMPADG 206

Query: 359 LKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIF 418
            +P   T  TL     +   +D A  L+ Q+                             
Sbjct: 207 CQPDCFTYNTLVHGVCQRGIIDEALRLVRQME---------------------------- 238

Query: 419 AKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHI 478
                 +RP++ TY +L   F N   P +  ++F   D+ K       + +   + H   
Sbjct: 239 ---GAGIRPNVFTYTMLVDGFCNAGRPEDAVHVF---DTMKEKGVSPNEASYRTLVHG-- 290

Query: 479 SMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTC 538
                 + LG       L ++    + P     +  +L+ L + + +   +E+ K+M + 
Sbjct: 291 ----AFRCLGRHKAYVMLTEWL-GREPPPHHSAWQCMLYCLSKNEMAKEVVEVTKKMNSR 345

Query: 539 GIPPNAATYNIMIDCCSIIRCFKSAS--ALVSMMVRDGFYPQTMTYTALIKILLDYGDFD 596
           G   + A + I++ C   ++C + +    L+   V+ G  P    Y  +IK LL      
Sbjct: 346 GYLLDNAIFGIVVSCA--VKCLELSDLCGLLDDFVKKGGNPGFDVYIMVIKSLLGCKSSS 403

Query: 597 EALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVF 656
           +A + L  + L+G+   V  YN ++    + G +D    II++M +  V P+  T + + 
Sbjct: 404 KANHYLKRMVLDGLLSGVTSYNMVIDCFVKAGAVDKAAEIIKEMREKGVLPNLVTFNTLI 463

Query: 657 SGYVNCGFHNSAMEALQVLSMRMLCEEVSTL 687
           SGY   G  ++A   L++L    L  ++ T 
Sbjct: 464 SGYSKLGNVHNAKAVLKMLMEHGLIPDIITF 494



 Score = 66.2 bits (160), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 87/414 (21%), Positives = 166/414 (40%), Gaps = 38/414 (9%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSH--TYDGFIRAIVSDRGLRNGMEVLK 352
           S+  ++H   R    G  +  ++  + LG +P  H   +   +  +  +   +  +EV K
Sbjct: 283 SYRTLVHGAFRCL--GRHKAYVMLTEWLGREPPPHHSAWQCMLYCLSKNEMAKEVVEVTK 340

Query: 353 IMQQNNLKPQDSTIATLSVECS-KALEL-DLAEALLDQISRCTNPKPFSAF------LAA 404
            M        D+ I  + V C+ K LEL DL   L D + +  NP  F  +      L  
Sbjct: 341 KMNSRGYL-LDNAIFGIVVSCAVKCLELSDLCGLLDDFVKKGGNPG-FDVYIMVIKSLLG 398

Query: 405 CDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI-NA 463
           C +  K    +K    +   L   + +Y ++   F    A  +   +  ++     + N 
Sbjct: 399 CKSSSKANHYLKRM--VLDGLLSGVTSYNMVIDCFVKAGAVDKAAEIIKEMREKGVLPNL 456

Query: 464 IEMDM---ARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLV 520
           +  +      + + + H + K +LK L   G+I ++I             T+ ++++ L 
Sbjct: 457 VTFNTLISGYSKLGNVH-NAKAVLKMLMEHGLIPDII-------------TFTSLINGLC 502

Query: 521 EAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTM 580
              +   A + F +M   G+ PNA TYN+++           A  L++ M +DG  P   
Sbjct: 503 HTHQLDDAFDCFNEMAEWGVRPNAHTYNVLMHALCSAGHVNKAIDLLNKMKKDGITPDAY 562

Query: 581 TYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQM 640
           ++ A I         D+A N+ + +   G+  D   YN+++K  C++ RID  + I+  M
Sbjct: 563 SFNAPILSFCRMKKVDKARNIFNAMLRLGVVPDNYTYNSLIKALCDERRIDEAKEILLLM 622

Query: 641 HQNKVQPDPSTCHF-VFSGYVNCGFHNSAMEALQVLSMR---MLCEEVSTLEEK 690
             +         H  + S     G  + A + +   + R   + C    T+E K
Sbjct: 623 ESSGSSATTHHTHLPIVSALTKTGQFSKAGQLMNKYNRRNVQLSCGSNRTIESK 676


>gi|255556314|ref|XP_002519191.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541506|gb|EEF43055.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 719

 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 103/440 (23%), Positives = 164/440 (37%), Gaps = 95/440 (21%)

Query: 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTY----DGFIRAIVSDRGLRNGM 348
           R++++ +IH   R+     A +L+ QM+ LG  P+  TY    DGF  A   D   R   
Sbjct: 252 RFTYNILIHGVCRSGVVDEALRLVKQMEGLGYSPNVFTYTILIDGFFNAKKVDEAFR--- 308

Query: 349 EVLKIMQQNNLKPQDSTIATL------SVECSKALELDLA----EALLDQISRCTNPKPF 398
            VL+ M+   + P ++TI +        V  +KA EL +     E +L ++         
Sbjct: 309 -VLETMKARKVSPSEATIRSFIHGVFRCVAPNKAFELAIEFIEREPVLQRL--------- 358

Query: 399 SAFLAACDTM----------DKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEE 448
                ACDT+           +    +K F K+  K  PD  T+ +  +           
Sbjct: 359 -----ACDTLLCCLSSKNMAREAGALLKKFGKIGHK--PDSATFNIAMNC---------- 401

Query: 449 GNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYF---CDSKT 505
             +    D  +  N ++       ++    +   L+KAL   G + E   YF        
Sbjct: 402 --LIKGFDLNEVCNILDR-FVEQGMKFGFSTYLALIKALYMAGKVTEGNHYFNQMVKDGL 458

Query: 506 PLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC-CSIIRCFKSAS 564
                +YN V+    +     +A   FK+M+  GIPPN  T+N +ID  C      KS  
Sbjct: 459 LCNVCSYNMVIDCFCKTSMMDKATNTFKEMQYKGIPPNLVTFNTLIDGYCKGGEICKSRD 518

Query: 565 ALV----------------------------------SMMVRDGFYPQTMTYTALIKILL 590
            LV                                  S MV  G  P  +TY  LI  L 
Sbjct: 519 LLVMLLEHGFKPDIFTFSSIIDGLCRAKQIEDALGCFSEMVMWGLSPNAVTYNILIHSLC 578

Query: 591 DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650
             GD   ++ LL  +  +GI  DV  +N +++  C  G+++  + +   M    + PD  
Sbjct: 579 IIGDVPRSMKLLRKMQTDGINPDVFSFNALIQSFCRMGKVEDAKKLFSSMLSLGLIPDNY 638

Query: 651 TCHFVFSGYVNCGFHNSAME 670
           T       +   G  N A E
Sbjct: 639 TYVAFIKVFCQSGRFNEAKE 658



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 117/537 (21%), Positives = 200/537 (37%), Gaps = 66/537 (12%)

Query: 137 YLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTY 196
           Y +E    I FLG    I P   +YN+ + A  K +S+  A L    M +     +  TY
Sbjct: 200 YCDEIFGQISFLG----ISPSTRLYNAVIDALVKSNSLDLAYLKFQQMSADNCKPDRFTY 255

Query: 197 TELL----KLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQH 252
             L+    +  V  + L  V ++       YS ++F+    +  F   + +  A+  L+ 
Sbjct: 256 NILIHGVCRSGVVDEALRLVKQMEG---LGYSPNVFTYTILIDGFFNAKKVDEAFRVLET 312

Query: 253 MVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLA 312
           M A  +         SE  +RS                         IH   R      A
Sbjct: 313 MKARKV-------SPSEATIRS------------------------FIHGVFRCVAPNKA 341

Query: 313 EQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVE 372
            +L ++             D  +  + S    R    +LK   +   KP DS    +++ 
Sbjct: 342 FELAIEFIEREPVLQRLACDTLLCCLSSKNMAREAGALLKKFGKIGHKP-DSATFNIAMN 400

Query: 373 C-SKALELDLAEALLDQISRCTNPKPFSAFLAACDTM---DKPERAIKIFAKM-RQKLRP 427
           C  K  +L+    +LD+         FS +LA    +    K       F +M +  L  
Sbjct: 401 CLIKGFDLNEVCNILDRFVEQGMKFGFSTYLALIKALYMAGKVTEGNHYFNQMVKDGLLC 460

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL 487
           ++ +Y ++   F   +   +  N F +             M    I  + ++   L+   
Sbjct: 461 NVCSYNMVIDCFCKTSMMDKATNTFKE-------------MQYKGIPPNLVTFNTLIDGY 507

Query: 488 GAEGMI---RELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNA 544
              G I   R+L+    +        T+++++  L  A++   A+  F +M   G+ PNA
Sbjct: 508 CKGGEICKSRDLLVMLLEHGFKPDIFTFSSIIDGLCRAKQIEDALGCFSEMVMWGLSPNA 567

Query: 545 ATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL-D 603
            TYNI+I    II     +  L+  M  DG  P   ++ ALI+     G  ++A  L   
Sbjct: 568 VTYNILIHSLCIIGDVPRSMKLLRKMQTDGINPDVFSFNALIQSFCRMGKVEDAKKLFSS 627

Query: 604 LVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYV 660
           ++SL  IP D   Y   +K  C+ GR +  + +   M  N   PD  TC+ +    V
Sbjct: 628 MLSLGLIP-DNYTYVAFIKVFCQSGRFNEAKELFLSMEANGCMPDSFTCNIILDALV 683



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 73/367 (19%), Positives = 144/367 (39%), Gaps = 20/367 (5%)

Query: 299 VIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNN 358
           +I + GR   +   +++  Q+  LG+ PS+  Y+  I A+V    L       + M  +N
Sbjct: 188 LIGSWGRLGLAKYCDEIFGQISFLGISPSTRLYNAVIDALVKSNSLDLAYLKFQQMSADN 247

Query: 359 LKPQDSTIATLSVECSKALELDLAEALLDQ---ISRCTNPKPFSAFLAACDTMDKPERAI 415
            KP   T   L     ++  +D A  L+ Q   +    N   ++  +       K + A 
Sbjct: 248 CKPDRFTYNILIHGVCRSGVVDEALRLVKQMEGLGYSPNVFTYTILIDGFFNAKKVDEAF 307

Query: 416 KIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQ 474
           ++   M+ +K+ P   T            AP +   +           AIE       +Q
Sbjct: 308 RVLETMKARKVSPSEATIRSFIHGVFRCVAPNKAFEL-----------AIEFIEREPVLQ 356

Query: 475 HSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEI 531
              ++   LL  L ++ M RE   L++ F        + T+N  ++ L++  + +    I
Sbjct: 357 R--LACDTLLCCLSSKNMAREAGALLKKFGKIGHKPDSATFNIAMNCLIKGFDLNEVCNI 414

Query: 532 FKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLD 591
             +    G+    +TY  +I    +       +   + MV+DG      +Y  +I     
Sbjct: 415 LDRFVEQGMKFGFSTYLALIKALYMAGKVTEGNHYFNQMVKDGLLCNVCSYNMVIDCFCK 474

Query: 592 YGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
               D+A N    +  +GIP +++ +NT++   C+ G I     ++  + ++  +PD  T
Sbjct: 475 TSMMDKATNTFKEMQYKGIPPNLVTFNTLIDGYCKGGEICKSRDLLVMLLEHGFKPDIFT 534

Query: 652 CHFVFSG 658
              +  G
Sbjct: 535 FSSIIDG 541



 Score = 54.3 bits (129), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 54/141 (38%)

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
           EIF Q+   GI P+   YN +ID          A      M  D   P   TY  LI  +
Sbjct: 203 EIFGQISFLGISPSTRLYNAVIDALVKSNSLDLAYLKFQQMSADNCKPDRFTYNILIHGV 262

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649
              G  DEAL L+  +   G   +V  Y  ++       ++D    ++E M   KV P  
Sbjct: 263 CRSGVVDEALRLVKQMEGLGYSPNVFTYTILIDGFFNAKKVDEAFRVLETMKARKVSPSE 322

Query: 650 STCHFVFSGYVNCGFHNSAME 670
           +T      G   C   N A E
Sbjct: 323 ATIRSFIHGVFRCVAPNKAFE 343



 Score = 43.5 bits (101), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 34/160 (21%), Positives = 61/160 (38%)

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           ++E+ K +K  G   N     I+I     +   K    +   +   G  P T  Y A+I 
Sbjct: 166 SVELLKDIKASGYRINEELLCILIGSWGRLGLAKYCDEIFGQISFLGISPSTRLYNAVID 225

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
            L+     D A      +S +    D   YN ++   C  G +D    +++QM      P
Sbjct: 226 ALVKSNSLDLAYLKFQQMSADNCKPDRFTYNILIHGVCRSGVVDEALRLVKQMEGLGYSP 285

Query: 648 DPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTL 687
           +  T   +  G+ N    + A   L+ +  R +    +T+
Sbjct: 286 NVFTYTILIDGFFNAKKVDEAFRVLETMKARKVSPSEATI 325



 Score = 41.2 bits (95), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 66/305 (21%), Positives = 111/305 (36%), Gaps = 16/305 (5%)

Query: 71  ASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQ 130
           A  LL   G   H   +  F   +N   +  D   V        E+ +      YL +++
Sbjct: 376 AGALLKKFGKIGHKPDSATFNIAMNCLIKGFDLNEVCNILDRFVEQGMKFGFSTYLALIK 435

Query: 131 ALCKGGYLEEASNLIYF-LGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMV 189
           AL   G + E ++  YF    + G+   +  YN  +    K   M  A      M  + +
Sbjct: 436 ALYMAGKVTEGNH--YFNQMVKDGLLCNVCSYNMVIDCFCKTSMMDKATNTFKEMQYKGI 493

Query: 190 GKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH-YSLSIFSLRKFVWSFTRLRDLKSAYE 248
             N VT+  L+        +    ++    ++H +   IF+    +    R + ++ A  
Sbjct: 494 PPNLVTFNTLIDGYCKGGEICKSRDLLVMLLEHGFKPDIFTFSSIIDGLCRAKQIEDALG 553

Query: 249 TLQHMVALAMMGKLYINRTSEGRLRSSRL---DIPIPLNALPVMKVLR-----WSFSDVI 300
               MV    M  L  N  +   L  S     D+P  +  L  M+        +SF+ +I
Sbjct: 554 CFSEMV----MWGLSPNAVTYNILIHSLCIIGDVPRSMKLLRKMQTDGINPDVFSFNALI 609

Query: 301 HACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLK 360
            +  R      A++L   M SLGL P ++TY  FI+            E+   M+ N   
Sbjct: 610 QSFCRMGKVEDAKKLFSSMLSLGLIPDNYTYVAFIKVFCQSGRFNEAKELFLSMEANGCM 669

Query: 361 PQDST 365
           P   T
Sbjct: 670 PDSFT 674


>gi|356575965|ref|XP_003556106.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g60050-like isoform 1 [Glycine max]
 gi|356575967|ref|XP_003556107.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g60050-like isoform 2 [Glycine max]
          Length = 480

 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 114/248 (45%), Gaps = 3/248 (1%)

Query: 442 VNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFC 501
           VNA +   +++++ +  K +  +  +M    +  +  +   L++  G  G+ + L++ F 
Sbjct: 156 VNAYHLVMSIYAECEEFKALWRLVDEMIEKGLPATARTFNILIRTCGEAGLAKNLVERFI 215

Query: 502 DSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIR 558
            SKT    P   +YN +LH L+   +      +++QM   G P +  TYNI++     + 
Sbjct: 216 KSKTFNFRPFKHSYNAILHGLLVLNQYKLIEWVYQQMLLDGFPSDILTYNIVMYAKYRLG 275

Query: 559 CFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYN 618
                  L+  M R+GF P   T+  L+ +L        ALNLL+ +   GI   VL + 
Sbjct: 276 KLDQFHRLLDEMGRNGFSPDFHTFNILLHVLGKGDKPLAALNLLNHMREMGIEPTVLHFT 335

Query: 619 TILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678
           T++      G +D  ++  ++M +N+ +PD      + +GYV  G    A+E  Q +  R
Sbjct: 336 TLIDGLSRAGNLDACKYFFDEMIKNECRPDVVAYTVMITGYVVAGEIEKALEMYQDMISR 395

Query: 679 MLCEEVST 686
                V T
Sbjct: 396 EQVPNVFT 403



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 60/273 (21%), Positives = 118/273 (43%), Gaps = 34/273 (12%)

Query: 295 SFSDVIHACGRTQNSGLAEQLM---LQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVL 351
           +F+ +I  CG    +GLA+ L+   ++ ++   +P  H+Y+  +  ++    + N  +++
Sbjct: 193 TFNILIRTCGE---AGLAKNLVERFIKSKTFNFRPFKHSYNAILHGLL----VLNQYKLI 245

Query: 352 K-IMQQNNLKPQDSTIATLSVECSKAL---ELDLAEALLDQISRCTNPKPFSAF---LAA 404
           + + QQ  L    S I T ++         +LD    LLD++ R      F  F   L  
Sbjct: 246 EWVYQQMLLDGFPSDILTYNIVMYAKYRLGKLDQFHRLLDEMGRNGFSPDFHTFNILLHV 305

Query: 405 CDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINA 463
               DKP  A+ +   MR+  + P +  +  L      ++     GN+    D+ K    
Sbjct: 306 LGKGDKPLAALNLLNHMREMGIEPTVLHFTTL------IDGLSRAGNL----DACKYFFD 355

Query: 464 IEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLV 520
              +M +N  +   ++   ++      G I + ++ + D  +    P   TYN+++  L 
Sbjct: 356 ---EMIKNECRPDVVAYTVMITGYVVAGEIEKALEMYQDMISREQVPNVFTYNSIIRGLC 412

Query: 521 EAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC 553
            A +   A  + K+M+T G  PN+  YN +  C
Sbjct: 413 MAGKFDEACSMLKEMETKGCSPNSVVYNTLASC 445


>gi|115450929|ref|NP_001049065.1| Os03g0165100 [Oryza sativa Japonica Group]
 gi|113547536|dbj|BAF10979.1| Os03g0165100 [Oryza sativa Japonica Group]
          Length = 695

 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 129/589 (21%), Positives = 221/589 (37%), Gaps = 101/589 (17%)

Query: 99  RSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPIL 158
           R+  P    + +R++      +N     +M+   CK    ++   +I  + E+  ++P +
Sbjct: 72  RAGWPHLAADAYRLVFSSNSEVNTYTLNIMVHNYCKALEFDKVDAVISEM-EKRCVFPDV 130

Query: 159 PVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLK----LAVWQKNLSAVHE 214
             +N  + A  +      A   +D M S+ +    VTY  +LK      +W K      E
Sbjct: 131 VTHNVMVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKE 190

Query: 215 IWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRS 274
           + +D+     +  F++   +  F R+ +++ A +  + M                 R R 
Sbjct: 191 M-DDFGVAPDVRSFTI--LIGGFCRVGEIEEALKIYKEM-----------------RHRG 230

Query: 275 SRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTY--- 331
            + D+               SFS +I    R      A   + +M+  GL P    Y   
Sbjct: 231 IKPDL--------------VSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMV 276

Query: 332 -DGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQIS 390
             GF RA +    LR    V   M      P   T  TL     K   L  AE LL+++ 
Sbjct: 277 IGGFCRAGLMSDALR----VRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMR 332

Query: 391 RCTNPK---PFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPY 446
               P     F+  +       K ++A+++F  M  Q+LRPDI TY  L      ++   
Sbjct: 333 ERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTL------IDGMC 386

Query: 447 EEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTP 506
            +G++        + N +  DM    I  +H+                            
Sbjct: 387 RQGDL-------DKANDLWDDMHSREIFPNHV---------------------------- 411

Query: 507 LGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC-CSIIRCFKSASA 565
               TY+ ++ S  E  +   A     +M   GI PN  TYN +I   C      K    
Sbjct: 412 ----TYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKF 467

Query: 566 LVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKAC 625
           L  MMV +   P  +TY  LI   +      +A  LL+++  E +  DV+ YN ++    
Sbjct: 468 LQKMMV-NKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFS 526

Query: 626 EKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQV 674
             G +    +I E+M    ++PD  T   + +G+V  G   ++ EA Q+
Sbjct: 527 VHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAG---NSKEAFQL 572



 Score = 82.4 bits (202), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 87/421 (20%), Positives = 162/421 (38%), Gaps = 75/421 (17%)

Query: 293 RWSFSDVI------HACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRN 346
           R  F DV+       A  R  ++  A  L+  M S GL+P   TY+  ++ +        
Sbjct: 124 RCVFPDVVTHNVMVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDK 183

Query: 347 GMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACD 406
             EV K M    + P                                + + F+  +    
Sbjct: 184 AWEVFKEMDDFGVAP--------------------------------DVRSFTILIGGFC 211

Query: 407 TMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFG------NVNAPYEEGNMFSQVDSAK 459
            + + E A+KI+ +MR + ++PD+ ++  L  LF       +  A   E   F  V    
Sbjct: 212 RVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGV 271

Query: 460 RINAIEMDMARNNIQHSHISMKNLLKALG-----------------------AEGMIREL 496
               +     R  +    + +++ +   G                       AEG++ E+
Sbjct: 272 IYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEM 331

Query: 497 IQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSI 556
            +       P    T+ T++H      +  +A+++F  M    + P+  TYN +ID    
Sbjct: 332 RE----RGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCR 387

Query: 557 IRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLL 616
                 A+ L   M     +P  +TY+ LI    + G  ++A   LD +  +GI  +++ 
Sbjct: 388 QGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMT 447

Query: 617 YNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
           YN+I+K  C  G +   +  +++M  NKV PD  T + +  GY+     +   +A ++L+
Sbjct: 448 YNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIK---EDKMHDAFKLLN 504

Query: 677 M 677
           M
Sbjct: 505 M 505



 Score = 63.2 bits (152), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 58/263 (22%), Positives = 113/263 (42%), Gaps = 16/263 (6%)

Query: 427 PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKA 486
           PD+ T+ ++      V+A +  G+       A+   A+   M    ++   ++  ++LK 
Sbjct: 128 PDVVTHNVM------VDARFRAGD-------AEAAMALVDSMVSKGLKPGIVTYNSVLKG 174

Query: 487 LGAEGM---IRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPN 543
           L   GM     E+ +   D        ++  ++       E   A++I+K+M+  GI P+
Sbjct: 175 LCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPD 234

Query: 544 AATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLD 603
             +++ +I   +       A A +  M   G  P  + YT +I      G   +AL + D
Sbjct: 235 LVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRD 294

Query: 604 LVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
            +   G   DV+ YNT+L   C++ R+   E ++ +M +  V PD  T   +  GY   G
Sbjct: 295 EMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEG 354

Query: 664 FHNSAMEALQVLSMRMLCEEVST 686
             + A++    +  + L  ++ T
Sbjct: 355 KLDKALQLFDTMLNQRLRPDIVT 377



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/185 (22%), Positives = 83/185 (44%), Gaps = 2/185 (1%)

Query: 495 ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI-DC 553
           E  +   D + P+     N +L +L  A   H A + ++ + +     N  T NIM+ + 
Sbjct: 46  EAFRLILDHRVPIPAAASNALLAALSRAGWPHLAADAYRLVFSSNSEVNTYTLNIMVHNY 105

Query: 554 CSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHD 613
           C  +  F    A++S M +   +P  +T+  ++      GD + A+ L+D +  +G+   
Sbjct: 106 CKALE-FDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALVDSMVSKGLKPG 164

Query: 614 VLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           ++ YN++LK  C  G  D    + ++M    V PD  +   +  G+   G    A++  +
Sbjct: 165 IVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYK 224

Query: 674 VLSMR 678
            +  R
Sbjct: 225 EMRHR 229


>gi|302788594|ref|XP_002976066.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
 gi|300156342|gb|EFJ22971.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
          Length = 440

 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 113/277 (40%), Gaps = 15/277 (5%)

Query: 412 ERAIKIF-AKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           + A+KIF   +++   PD+ TY  L              N F + D       I   M  
Sbjct: 62  DEALKIFDGAVKRGFVPDVVTYNALI-------------NGFCKADKLDEAQRILQRMVS 108

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLV-EAQESHRAM 529
            N+    ++  +L+  L   G + E      D        TY+T++  L  E +    A+
Sbjct: 109 ENLVPDVVTYNSLVNGLCKNGRVDEARMLIVDKGFSPNVITYSTLISGLCRELRGVSEAL 168

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
           ++F  +   G  P   TYNI+ID          A  L S +V+ G  P  +TYT  I  L
Sbjct: 169 KLFGSVLKQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGL 228

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649
              G  ++AL +L  +  +G   DV+ +N ++   C++ R+D  E ++  M      P+ 
Sbjct: 229 CKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNA 288

Query: 650 STCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
            + + +  G    G    AM   + +  R +   V T
Sbjct: 289 ISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVT 325



 Score = 82.8 bits (203), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 85/365 (23%), Positives = 139/365 (38%), Gaps = 30/365 (8%)

Query: 323 GLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLA 382
           G  P   TY+  I        L     +L+ M   NL P   T  +L     K   +D A
Sbjct: 75  GFVPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYNSLVNGLCKNGRVDEA 134

Query: 383 EALLDQISRCTNPKPFSAFLAA-CDTMDKPERAIKIFAK-MRQKLRPDIRTYELL----- 435
             L+       N   +S  ++  C  +     A+K+F   ++Q   P++ TY +L     
Sbjct: 135 RMLIVDKGFSPNVITYSTLISGLCRELRGVSEALKLFGSVLKQGYEPEVPTYNILIDGLL 194

Query: 436 --------FSLFGNVNAPYEEGNMFSQ---VDSAKRINAIE------MDMARNNIQHSHI 478
                   F LF  +     E +  +    +D   +   +E       DM         +
Sbjct: 195 KEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVV 254

Query: 479 SMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQM 535
           S   ++  L  E  + E        +    +P   ++NT++     A +  +AM  FK+M
Sbjct: 255 SHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEM 314

Query: 536 KTCGIPPNAATYNIMIDCCSIIRC---FKSASALVSMMVRDGFYPQTMTYTALIKILLDY 592
              G+ P   TYNI++D     R     K A  L   M+  G  P  +TY+ALI  L   
Sbjct: 315 LKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKA 374

Query: 593 GDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTC 652
           G  D+A  LL  +  +G   +V  YN+++   C   ++D    +   M +    PD  T 
Sbjct: 375 GKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLEKVDEALELFVAMVEKGCVPDTITY 434

Query: 653 HFVFS 657
             + S
Sbjct: 435 GTIIS 439



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 80/344 (23%), Positives = 143/344 (41%), Gaps = 16/344 (4%)

Query: 319 MQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALE 378
           M+  G  P+  TY+  +  + +   + +   + + M +    P   T  TL     K  E
Sbjct: 1   MRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGE 60

Query: 379 LDLAEALLD-QISRCTNPK--PFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYEL 434
           LD A  + D  + R   P    ++A +      DK + A +I  +M  + L PD+ TY  
Sbjct: 61  LDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYNS 120

Query: 435 LFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIR 494
           L      VN   + G    +VD A R+  ++   + N I +S + +  L + L       
Sbjct: 121 L------VNGLCKNG----RVDEA-RMLIVDKGFSPNVITYSTL-ISGLCRELRGVSEAL 168

Query: 495 ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCC 554
           +L             PTYN ++  L++    + A E+F  +   G+ P+A TY + ID  
Sbjct: 169 KLFGSVLKQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGL 228

Query: 555 SIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDV 614
                 + A  ++  M   G  P  +++ A+I  L      DEA  LL  +  +G   + 
Sbjct: 229 CKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNA 288

Query: 615 LLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
           + +NT++   C  G+        ++M +  V+P   T + +  G
Sbjct: 289 ISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDG 332



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 97/470 (20%), Positives = 168/470 (35%), Gaps = 87/470 (18%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y  ++   CK G L+EA   I+    + G  P +  YN+ +    K   +  A   L  M
Sbjct: 48  YNTLLHGFCKVGELDEALK-IFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRM 106

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLK 244
            S  +  + VTY  L+        +     +  D  K +S ++ +    +      R+L+
Sbjct: 107 VSENLVPDVVTYNSLVNGLCKNGRVDEARMLIVD--KGFSPNVITYSTLISGLC--RELR 162

Query: 245 SAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACG 304
              E L          KL+      G +     +  +P            +++ +I    
Sbjct: 163 GVSEAL----------KLF------GSVLKQGYEPEVP------------TYNILIDGLL 194

Query: 305 RTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDS 364
           +      A +L   +   GL+P + TY  FI  +     + + + +LK M +    P   
Sbjct: 195 KEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVV 254

Query: 365 TIATLSVECSKALELDLAEALLD--QISRCT-NPKPFSAFLAACDTMDKPERAIKIFAKM 421
           +   +     K   +D AE LL   +   C+ N   F+  +       K ++A+  F +M
Sbjct: 255 SHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEM 314

Query: 422 -RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISM 480
            ++ ++P + TY +L                                            +
Sbjct: 315 LKRGVKPTVVTYNIL--------------------------------------------V 330

Query: 481 KNLLKALGAEGMIRELIQYFCDSKTPLG----TPTYNTVLHSLVEAQESHRAMEIFKQMK 536
             L KA   EG I+E I  F D+    G      TY+ ++  L +A +   A  +   M+
Sbjct: 331 DGLCKAR-QEGRIKEAITLF-DAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAME 388

Query: 537 TCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
             G  PN  TYN +I     +     A  L   MV  G  P T+TY  +I
Sbjct: 389 AKGCIPNVYTYNSLISGLCGLEKVDEALELFVAMVEKGCVPDTITYGTII 438



 Score = 49.3 bits (116), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 54/117 (46%)

Query: 570 MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
           M + GF+P  +TY AL+  L + G   +A  L + +   G   DV+ YNT+L   C+ G 
Sbjct: 1   MRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGE 60

Query: 630 IDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           +D    I +   +    PD  T + + +G+      + A   LQ +    L  +V T
Sbjct: 61  LDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVT 117


>gi|302821471|ref|XP_002992398.1| hypothetical protein SELMODRAFT_135281 [Selaginella moellendorffii]
 gi|300139814|gb|EFJ06548.1| hypothetical protein SELMODRAFT_135281 [Selaginella moellendorffii]
          Length = 698

 Score = 82.8 bits (203), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 78/357 (21%), Positives = 151/357 (42%), Gaps = 24/357 (6%)

Query: 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
           R S+  ++ + G+   +  AE L+ +M+  GL+P+   Y+  +        L+    V  
Sbjct: 282 RDSYISLMLSLGKHGRTAEAEALLEEMKWYGLRPNLKAYNTLLGGYSRKGQLQQIDTVKT 341

Query: 353 IMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT---NPKPFSAFLAACDTMD 409
           +++   +     T   L    ++A  +D  EAL  ++  C    N   ++  +       
Sbjct: 342 LLRDTGMSINKITYCLLIDAYARAGLMDRLEALYQEMRDCDIRPNTYMYARMITIYRDTG 401

Query: 410 KPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
           + ++ +K+  +M+Q  + PD   Y ++ + FG             Q++ A RI   +M  
Sbjct: 402 QWQKGVKLLREMQQAGVTPDAHVYNVIINTFGRTR----------QLEQA-RIAFFKMQ- 449

Query: 469 ARNNIQHSHISMKNLLKALGAEGM---IRELIQYFCDSKTPLGTPTYNTVLHSLVEAQES 525
               I+   +S  +L+ A    G     R+L     +        T+N V+H L E +  
Sbjct: 450 -DGGIEPDVVSWNSLIDACCKAGQPLEARKLYYKMVNDGCAPTAQTFNIVIHGLGEHKRW 508

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
           +   E+ ++M++ G+ PN  TY  ++D  +  R F+ A   +  M  DG  P    Y+AL
Sbjct: 509 NDVNEMVEEMRSKGMFPNVVTYTTLVDVYAQARLFQDAVECLQTMKEDGMGPSPTAYSAL 568

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR----IDVIEFIIE 638
                  G  ++ L++L  +  E I  ++ + N ++      GR      V E+I E
Sbjct: 569 ANAYAQLGMCEQTLHVLQTMEKENIEINLAMLNLLINAFSMAGRSQEAFAVFEYIKE 625



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 74/393 (18%), Positives = 156/393 (39%), Gaps = 25/393 (6%)

Query: 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAI---VSDRGLRNGME 349
           R  ++ ++ A  + ++ G A + + +M++LG  P   +Y   I+A    V D  +  G  
Sbjct: 176 RRGYNALVGAYAQNRDYGKALETLSKMKTLGFPPDVVSYTHVIQACRHGVVD--IYTGFR 233

Query: 350 VLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMD 409
           + + MQ   ++        L   C +A + +     L+++          ++++   ++ 
Sbjct: 234 LFQEMQAEGVQVDGKVYNDLIFACGQAHKPNEGMFFLEKLQASGLVADRDSYISLMLSLG 293

Query: 410 KPERAIKIFAKMRQ----KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIE 465
           K  R  +  A + +     LRP+++ Y  L          Y       Q+D+ K +   +
Sbjct: 294 KHGRTAEAEALLEEMKWYGLRPNLKAYNTLL-------GGYSRKGQLQQIDTVKTL-LRD 345

Query: 466 MDMARNNIQHSHISMKNLLKALGAEGM---IRELIQYFCDSKTPLGTPTYNTVLHSLVEA 522
             M+ N I +       L+ A    G+   +  L Q   D      T  Y  ++    + 
Sbjct: 346 TGMSINKITYCL-----LIDAYARAGLMDRLEALYQEMRDCDIRPNTYMYARMITIYRDT 400

Query: 523 QESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTY 582
            +  + +++ ++M+  G+ P+A  YN++I+     R  + A      M   G  P  +++
Sbjct: 401 GQWQKGVKLLREMQQAGVTPDAHVYNVIINTFGRTRQLEQARIAFFKMQDGGIEPDVVSW 460

Query: 583 TALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642
            +LI      G   EA  L   +  +G       +N ++    E  R + +  ++E+M  
Sbjct: 461 NSLIDACCKAGQPLEARKLYYKMVNDGCAPTAQTFNIVIHGLGEHKRWNDVNEMVEEMRS 520

Query: 643 NKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
             + P+  T   +   Y        A+E LQ +
Sbjct: 521 KGMFPNVVTYTTLVDVYAQARLFQDAVECLQTM 553


>gi|193806393|sp|P0C7Q7.1|PPR38_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial; Flags: Precursor
          Length = 602

 Score = 82.8 bits (203), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 76/385 (19%), Positives = 167/385 (43%), Gaps = 47/385 (12%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           ++ + +I+   R   +  A  ++ ++  LG +P + T++  I+ +  +  +   + ++  
Sbjct: 124 YTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDR 183

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPER 413
           M +N  +P   T  ++     ++ +  LA  LL ++                      ER
Sbjct: 184 MVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKME---------------------ER 222

Query: 414 AIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNI 473
            +K           D+ TY  +      +++   +G + + +   K       +M    I
Sbjct: 223 NVK----------ADVFTYSTI------IDSLCRDGCIDAAISLFK-------EMETKGI 259

Query: 474 QHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAME 530
           + S ++  +L++ L   G   +   L++     +      T+N +L   V+  +   A E
Sbjct: 260 KSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANE 319

Query: 531 IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590
           ++K+M T GI PN  TYN ++D   +      A+ ++ +MVR+   P  +T+T+LIK   
Sbjct: 320 LYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYC 379

Query: 591 DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650
                D+ + +   +S  G+  + + Y+ +++  C+ G+I + E + ++M  + V PD  
Sbjct: 380 MVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVM 439

Query: 651 TCHFVFSGYVNCGFHNSAMEALQVL 675
           T   +  G  + G    A+E  + L
Sbjct: 440 TYGILLDGLCDNGKLEKALEIFEDL 464



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/269 (21%), Positives = 110/269 (40%), Gaps = 16/269 (5%)

Query: 421 MRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISM 480
           M+    PD  T+  L      +   + EG +   V    R       M  N  Q   ++ 
Sbjct: 150 MKLGYEPDTTTFNTL------IKGLFLEGKVSEAVVLVDR-------MVENGCQPDVVTY 196

Query: 481 KNLLKAL---GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKT 537
            +++  +   G   +  +L++   +        TY+T++ SL        A+ +FK+M+T
Sbjct: 197 NSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMET 256

Query: 538 CGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDE 597
            GI  +  TYN ++        +   + L+  MV     P  +T+  L+ + +  G   E
Sbjct: 257 KGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQE 316

Query: 598 ALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFS 657
           A  L   +   GI  +++ YNT++   C + R+     +++ M +NK  PD  T   +  
Sbjct: 317 ANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIK 376

Query: 658 GYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           GY      +  M+  + +S R L     T
Sbjct: 377 GYCMVKRVDDGMKVFRNISKRGLVANAVT 405



 Score = 66.2 bits (160), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 78/349 (22%), Positives = 134/349 (38%), Gaps = 29/349 (8%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           +++S +I +  R      A  L  +M++ G++ S  TY+  +R +       +G  +LK 
Sbjct: 229 FTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKD 288

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPK--PFSAFLAACDTMDK 410
           M    + P   T   L     K  +L  A  L  + I+R  +P    ++  +      ++
Sbjct: 289 MVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNR 348

Query: 411 PERAIKIFAKM-RQKLRPDIRTYELLFS-------------LFGNVNAPYEEGNM----- 451
              A  +   M R K  PDI T+  L               +F N++      N      
Sbjct: 349 LSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSI 408

Query: 452 ----FSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCD---SK 504
               F Q    K    +  +M  + +    ++   LL  L   G + + ++ F D   SK
Sbjct: 409 LVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSK 468

Query: 505 TPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSAS 564
             LG   Y T++  + +  +   A  +F  +   G+ PN  TY +MI           A+
Sbjct: 469 MDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEAN 528

Query: 565 ALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHD 613
            L+  M  DG  P   TY  LI+  L  GD   +  L++ +   G   D
Sbjct: 529 ILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSAD 577



 Score = 64.3 bits (155), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 87/404 (21%), Positives = 159/404 (39%), Gaps = 55/404 (13%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ +++   R+ ++ LA  L+ +M+   ++    TY   I ++  D  +   + + K M
Sbjct: 195 TYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEM 254

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALL-DQISRCTNPK--PFSAFLAACDTMDKP 411
           +   +K    T  +L     KA + +    LL D +SR   P    F+  L       K 
Sbjct: 255 ETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKL 314

Query: 412 ERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           + A +++ +M  + + P+I TY  L   +   N   E  NM                M R
Sbjct: 315 QEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDL-------------MVR 361

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCD-SKTPL--GTPTYNTVLHSLVEAQESHR 527
           N      ++  +L+K       + + ++ F + SK  L     TY+ ++    ++ +   
Sbjct: 362 NKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKL 421

Query: 528 AMEIFKQMKTCGIPPNAATYNIMID--C---------------------------CSIIR 558
           A E+F++M + G+ P+  TY I++D  C                            +II 
Sbjct: 422 AEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIE 481

Query: 559 --C----FKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPH 612
             C     + A  L   +   G  P  MTYT +I  L   G   EA  LL  +  +G   
Sbjct: 482 GMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAP 541

Query: 613 DVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVF 656
           +   YNT+++     G +     +IE+M       D S+   V 
Sbjct: 542 NDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVI 585



 Score = 58.9 bits (141), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 58/258 (22%), Positives = 102/258 (39%), Gaps = 8/258 (3%)

Query: 436 FSLFGNVNAPYEEGNMFSQVDSAKRINAIEM--DMARNNIQHSHISMKNLLKALGAEGMI 493
           FS   N N  + E  + S +   K+ +AI +  +M R+    S +       A+      
Sbjct: 46  FSSISNGNVCFRE-RLRSGIVDIKKDDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQF 104

Query: 494 RELIQYFCDSKTPLGTP----TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNI 549
             L+  FC      G      T N +++      ++  A  +  ++   G  P+  T+N 
Sbjct: 105 -NLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNT 163

Query: 550 MIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEG 609
           +I    +      A  LV  MV +G  P  +TY +++  +   GD   AL+LL  +    
Sbjct: 164 LIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERN 223

Query: 610 IPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAM 669
           +  DV  Y+TI+   C  G ID    + ++M    ++    T + +  G    G  N   
Sbjct: 224 VKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGA 283

Query: 670 EALQVLSMRMLCEEVSTL 687
             L+ +  R +   V T 
Sbjct: 284 LLLKDMVSREIVPNVITF 301



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 64/283 (22%), Positives = 119/283 (42%), Gaps = 28/283 (9%)

Query: 93  ILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERY 152
           I+N   RS D    ++  R MEE+ +  +   Y  ++ +LC+ G ++ A +L   + E  
Sbjct: 199 IVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEM-ETK 257

Query: 153 GIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAV 212
           GI   +  YNS +    K        L L  M SR +  N +T+  LL + V +  L   
Sbjct: 258 GIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEA 317

Query: 213 HEIWEDYI-KHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMV-----------ALAMMG 260
           +E++++ I +  S +I +    +  +     L  A   L  MV              + G
Sbjct: 318 NELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKG 377

Query: 261 KLYINRTSEG----RLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLM 316
              + R  +G    R  S R    +  NA+        ++S ++    ++    LAE+L 
Sbjct: 378 YCMVKRVDDGMKVFRNISKR---GLVANAV--------TYSILVQGFCQSGKIKLAEELF 426

Query: 317 LQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNL 359
            +M S G+ P   TY   +  +  +  L   +E+ + +Q++ +
Sbjct: 427 QEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKM 469



 Score = 45.1 bits (105), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 28/112 (25%), Positives = 57/112 (50%), Gaps = 1/112 (0%)

Query: 107 METWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLG 166
           +E +  +++ ++ L    Y  +++ +CKGG +E+A NL   L  + G+ P +  Y   + 
Sbjct: 458 LEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCK-GVKPNVMTYTVMIS 516

Query: 167 ACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWED 218
              K  S+  AN+ L  M+      N+ TY  L++  +   +L+A  ++ E+
Sbjct: 517 GLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEE 568


>gi|359474768|ref|XP_002270963.2| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic [Vitis vinifera]
          Length = 1022

 Score = 82.8 bits (203), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 127/622 (20%), Positives = 244/622 (39%), Gaps = 80/622 (12%)

Query: 108 ETWRMMEEKEIGLNNKCYLL--MMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFL 165
           +++ + E    G++   YL    + A CKGG +E+A  L +F  E+ G+ P +  YN+ +
Sbjct: 297 KSYWVFETMRQGVSPDVYLFSTAINAFCKGGKVEDAIQL-FFDMEKLGVSPNVVTYNNLI 355

Query: 166 GACAKLHSMVHANLCLDLMDSRMVGKNEVTYT----ELLKLAVWQKNLSAVHEIWEDYIK 221
               K  ++  A    + M    V    +TY+     L+KL  + +  S + E  E   K
Sbjct: 356 HGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETLE---K 412

Query: 222 HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPI 281
            ++ +       +  + ++ +L  A      MV+        IN  S            +
Sbjct: 413 GFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKG------INPNS------------V 454

Query: 282 PLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSD 341
            LN+             +I    +      AE ++ +M S G   +   +   I  +  +
Sbjct: 455 TLNS-------------IIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMN 501

Query: 342 RGLRNGMEVLKIMQQNNLKPQDSTIATL-SVECSKALELDLAEALLDQISRCTNPKPFSA 400
               + +  L+ M   N++P D  + TL    C +    D  E     +      K F A
Sbjct: 502 SRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLE-----KGFGA 556

Query: 401 FLAA--------CDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNM 451
            L          C T +  E A+++  KM ++    D  TY  L S         +EG  
Sbjct: 557 NLVTTNALIHGLCKTGNMQE-AVRLLKKMLERGFVLDKITYNTLIS------GCCKEG-- 607

Query: 452 FSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP- 510
             +V+   ++     +M +  I+    +   L+  +   G + E +  + + K+    P 
Sbjct: 608 --KVEEGFKLRG---EMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPN 662

Query: 511 --TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVS 568
             TY  ++    +A +     ++F ++ T  +  N+  YN +I           A  L  
Sbjct: 663 VYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHD 722

Query: 569 MMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
            M   G  P T TY++LI  + + G  ++A  L+D +  EG+  +V+ Y  ++   C+ G
Sbjct: 723 DMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLG 782

Query: 629 RIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLE 688
           ++D +  ++++M    + P+  T   +  GY   G   +A + L  +  + +  +  T  
Sbjct: 783 QMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYN 842

Query: 689 EKRSDF-------EDLILAEDS 703
              + F       E  +LAED 
Sbjct: 843 VLTNGFCKEGKIEEGKLLAEDG 864



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 63/333 (18%), Positives = 122/333 (36%), Gaps = 52/333 (15%)

Query: 343 GLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFL 402
           G RN + V + +    + P   T   L     KA EL                       
Sbjct: 259 GFRNAIGVFRFLANKGVFPTVKTCTFLLSSLVKANEL----------------------- 295

Query: 403 AACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRIN 462
                    E++  +F  MRQ + PD+  +    + F                   K  +
Sbjct: 296 ---------EKSYWVFETMRQGVSPDVYLFSTAINAF---------------CKGGKVED 331

Query: 463 AIEM--DMARNNIQHSHISMKNLLKALGAEGMIRELIQY---FCDSKTPLGTPTYNTVLH 517
           AI++  DM +  +  + ++  NL+  L   G + E  ++              TY+ +++
Sbjct: 332 AIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLIN 391

Query: 518 SLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYP 577
            L++ ++ + A  + K+    G  PN   YN +ID    +     A  +   MV  G  P
Sbjct: 392 GLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINP 451

Query: 578 QTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFII 637
            ++T  ++I+     G  ++A  +L+ +   G   +   + TI+   C   R +     +
Sbjct: 452 NSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFL 511

Query: 638 EQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAME 670
            +M    ++P+      +  G    G H+ A+E
Sbjct: 512 REMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVE 544


>gi|302799124|ref|XP_002981321.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
 gi|300150861|gb|EFJ17509.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
          Length = 457

 Score = 82.8 bits (203), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 73/341 (21%), Positives = 134/341 (39%), Gaps = 22/341 (6%)

Query: 319 MQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALE 378
           M + G  P+++TY   +R++   +       V + M      P   + + L     +  +
Sbjct: 43  MLAAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQK 102

Query: 379 LDLAEALLDQI---SRCTNPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYEL 434
           +D A  LL+++       N   + + L+    M K + A+ +F++M  +   PD   Y +
Sbjct: 103 VDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNV 162

Query: 435 LFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIR 494
           L   F       E   +F +             M       +  +  +LL     +G   
Sbjct: 163 LIDGFSKKGDMGEAYRLFEE-------------MLEKGCIPTVFTYNSLLSGFSRKGEFG 209

Query: 495 ELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI 551
            +   F D       P   T+N +L    +  +   A  +F +M++ G PP+  +YN +I
Sbjct: 210 RVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLI 269

Query: 552 -DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGI 610
              CS  +  + A  L+  M+R G  P  ++Y  LI      G  D A+ L   +   G+
Sbjct: 270 RGMCSKGKPHE-AQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGL 328

Query: 611 PHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
             D   Y+TI+   C  G++     + + M  N   PD + 
Sbjct: 329 EPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAV 369



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 94/208 (45%), Gaps = 5/208 (2%)

Query: 467 DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCD---SKTPLGTPTYNTVLHSLVEAQ 523
           +M     Q + ++  +LL  L   G ++E +  F        P     YN ++    +  
Sbjct: 112 EMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKG 171

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
           +   A  +F++M   G  P   TYN ++   S    F    +L   M+R G  P   T+ 
Sbjct: 172 DMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFN 231

Query: 584 ALIKILLDYGDFDEALNL-LDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642
            L+      GD  EA  L L++ SL G P DV+ YNT+++  C KG+    + ++ +M +
Sbjct: 232 NLLDGFCKMGDMVEAHRLFLEMRSL-GCPPDVVSYNTLIRGMCSKGKPHEAQRLLREMIR 290

Query: 643 NKVQPDPSTCHFVFSGYVNCGFHNSAME 670
           + V PD  + + +  GY   G  + A++
Sbjct: 291 SGVGPDIVSYNILIDGYSKSGALDHAIK 318



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 78/369 (21%), Positives = 149/369 (40%), Gaps = 34/369 (9%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           +S+S +I    R Q    A +L+ +M   G QP+  TY   +  +     L+  +++   
Sbjct: 88  FSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSR 147

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPKPFS--AFLAACDTMDK 410
           M      P       L    SK  ++  A  L ++ + +   P  F+  + L+      +
Sbjct: 148 MVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGE 207

Query: 411 PERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
             R   +F  M RQ   P+I T+  L   F  +    E   +F             ++M 
Sbjct: 208 FGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLF-------------LEMR 254

Query: 470 RNNIQHSHISMKNLLKALGAEG-------MIRELIQYFCDSKTPLGTPTYNTVLHSLVEA 522
                   +S   L++ + ++G       ++RE+I+    S       +YN ++    ++
Sbjct: 255 SLGCPPDVVSYNTLIRGMCSKGKPHEAQRLLREMIR----SGVGPDIVSYNILIDGYSKS 310

Query: 523 QESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSM--MVRDGFYPQTM 580
                A+++F ++   G+ P+A +Y+ +IDC  + R  K  +A V    M+ +G  P   
Sbjct: 311 GALDHAIKLFYEIPKSGLEPDAFSYSTIIDC--LCRAGKVGAAFVVFKDMIANGSAPDAA 368

Query: 581 TYTALIKILLDYGDFDEALNLLD-LVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQ 639
               L+  L       E+  L   +V  E +P  +  YN ++ K C+  R D +  I  +
Sbjct: 369 VVIPLVIGLCRGERLTESCELFQAMVKFECVPL-IPEYNLLMYKLCKAKRSDDVCEIFHE 427

Query: 640 MHQNKVQPD 648
           + +    PD
Sbjct: 428 LTERGFSPD 436



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 64/153 (41%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           +Y+ ++  L   Q+   A E+  +M   G  PN  TY  ++     +   K A  L S M
Sbjct: 89  SYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRM 148

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           V  G  P  + Y  LI      GD  EA  L + +  +G    V  YN++L     KG  
Sbjct: 149 VYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEF 208

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
             ++ + + M +    P+  T + +  G+   G
Sbjct: 209 GRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMG 241



 Score = 52.8 bits (125), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 64/156 (41%)

Query: 508 GTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALV 567
           GT +YN +L  L ++         +  M   G  PN  TY  ++      + F+ A ++ 
Sbjct: 16  GTLSYNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLRSLCQAQRFEEARSVF 75

Query: 568 SMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEK 627
             M   G  P   +Y+ LI  L      DEA  LL+ +   G   +V+ Y ++L   C+ 
Sbjct: 76  RGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKM 135

Query: 628 GRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
           G++     +  +M      PD    + +  G+   G
Sbjct: 136 GKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKG 171


>gi|356544498|ref|XP_003540687.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Glycine max]
          Length = 623

 Score = 82.8 bits (203), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 82/365 (22%), Positives = 151/365 (41%), Gaps = 22/365 (6%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ +IH          A  +   M+  GL+P  +TY+ FI  +  +  L     ++  M
Sbjct: 253 TYNTIIHGHCLRGKFQRARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEASGLICKM 312

Query: 355 QQNNLKPQDSTI-ATLSVECSKALELDLAEALLDQ-ISRCTNPK--PFSAFLAACDTMDK 410
            +  L P   T  A +   C+K  +LD A A  D+ IS+        ++ F+ A     +
Sbjct: 313 LEGGLVPNAVTYNALIDGYCNKG-DLDKAYAYRDEMISKGIMASLVTYNLFIHALFMEGR 371

Query: 411 PERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
              A  +  +MR+K + PD  T+ +L              N + +   AKR   +  +M 
Sbjct: 372 MGDADNMIKEMREKGMMPDAVTHNILI-------------NGYCRCGDAKRAFGLLDEMV 418

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESH 526
              IQ + ++  +L+  LG    ++E    F   +     P    +N ++          
Sbjct: 419 GKGIQPTLVTYTSLIYVLGKRNRMKEADALFSKIQQEGLLPDIIVFNALIDGHCANGNID 478

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
           RA ++ K+M    + P+  TYN ++         + A  L+  M R G  P  ++Y  LI
Sbjct: 479 RAFQLLKEMDNMKVLPDEITYNTLMQGYCREGKVEEARQLLDEMKRRGIKPDHISYNTLI 538

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
                 GD  +A  + D +   G    +L YN +++  C+    +  E ++++M    + 
Sbjct: 539 SGYSKRGDMKDAFRVRDEMMTTGFDPTILTYNALIQGLCKNQEGEHAEELLKEMVSKGIT 598

Query: 647 PDPST 651
           PD ST
Sbjct: 599 PDDST 603



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 60/200 (30%), Positives = 94/200 (47%), Gaps = 10/200 (5%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRC--FKSASALVS 568
           TYN  +H+L        A  + K+M+  G+ P+A T+NI+I+     RC   K A  L+ 
Sbjct: 358 TYNLFIHALFMEGRMGDADNMIKEMREKGMMPDAVTHNILIN--GYCRCGDAKRAFGLLD 415

Query: 569 MMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
            MV  G  P  +TYT+LI +L       EA  L   +  EG+  D++++N ++   C  G
Sbjct: 416 EMVGKGIQPTLVTYTSLIYVLGKRNRMKEADALFSKIQQEGLLPDIIVFNALIDGHCANG 475

Query: 629 RIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEE---VS 685
            ID    ++++M   KV PD  T + +  GY   G    A + L  +  R +  +    +
Sbjct: 476 NIDRAFQLLKEMDNMKVLPDEITYNTLMQGYCREGKVEEARQLLDEMKRRGIKPDHISYN 535

Query: 686 TL---EEKRSDFEDLILAED 702
           TL     KR D +D     D
Sbjct: 536 TLISGYSKRGDMKDAFRVRD 555



 Score = 76.3 bits (186), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 76/381 (19%), Positives = 156/381 (40%), Gaps = 63/381 (16%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           ++F+ +I+   +      A++ +  M++LG++P+  TY+  I         +    + + 
Sbjct: 217 YTFNIMINVLCKEGKLKKAKEFIGHMETLGVKPNVVTYNTIIHGHCLRGKFQRARVIFQT 276

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPER 413
           M+   L+P   T                                +++F++      + E 
Sbjct: 277 MKDKGLEPDCYT--------------------------------YNSFISGLCKEGRLEE 304

Query: 414 AIKIFAKMRQK-LRPDIRTYELLFSLF---GNVNAPY-------EEGNMFSQVDSAKRIN 462
           A  +  KM +  L P+  TY  L   +   G+++  Y        +G M S V     I+
Sbjct: 305 ASGLICKMLEGGLVPNAVTYNALIDGYCNKGDLDKAYAYRDEMISKGIMASLVTYNLFIH 364

Query: 463 AIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEA 522
           A+ M+    +         N++K +  +GM+ + +             T+N +++     
Sbjct: 365 ALFMEGRMGDAD-------NMIKEMREKGMMPDAV-------------THNILINGYCRC 404

Query: 523 QESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTY 582
            ++ RA  +  +M   GI P   TY  +I         K A AL S + ++G  P  + +
Sbjct: 405 GDAKRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKRNRMKEADALFSKIQQEGLLPDIIVF 464

Query: 583 TALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642
            ALI      G+ D A  LL  +    +  D + YNT+++  C +G+++    ++++M +
Sbjct: 465 NALIDGHCANGNIDRAFQLLKEMDNMKVLPDEITYNTLMQGYCREGKVEEARQLLDEMKR 524

Query: 643 NKVQPDPSTCHFVFSGYVNCG 663
             ++PD  + + + SGY   G
Sbjct: 525 RGIKPDHISYNTLISGYSKRG 545



 Score = 62.4 bits (150), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 91/438 (20%), Positives = 174/438 (39%), Gaps = 61/438 (13%)

Query: 127 LMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFL-GACAKLHSMVHANLCLDLMD 185
           +M+  LCK G L++A   I  + E  G+ P +  YN+ + G C +      A +    M 
Sbjct: 221 IMINVLCKEGKLKKAKEFIGHM-ETLGVKPNVVTYNTIIHGHCLR-GKFQRARVIFQTMK 278

Query: 186 SRMVGKNEVTY----TELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLR 241
            + +  +  TY    + L K    ++    + ++ E  +   +++  +L   +  +    
Sbjct: 279 DKGLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVPNAVTYNAL---IDGYCNKG 335

Query: 242 DLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIH 301
           DL  AY     M++  +M  L                                +++  IH
Sbjct: 336 DLDKAYAYRDEMISKGIMASLV-------------------------------TYNLFIH 364

Query: 302 ACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKP 361
           A       G A+ ++ +M+  G+ P + T++  I         +    +L  M    ++P
Sbjct: 365 ALFMEGRMGDADNMIKEMREKGMMPDAVTHNILINGYCRCGDAKRAFGLLDEMVGKGIQP 424

Query: 362 QDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKPERAIKIF 418
              T  +L     K   +  A+AL  +I +     +   F+A +         +RA ++ 
Sbjct: 425 TLVTYTSLIYVLGKRNRMKEADALFSKIQQEGLLPDIIVFNALIDGHCANGNIDRAFQLL 484

Query: 419 AKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSH 477
            +M   K+ PD  TY  L   +        EG    +V+ A+++     +M R  I+  H
Sbjct: 485 KEMDNMKVLPDEITYNTLMQGY------CREG----KVEEARQLLD---EMKRRGIKPDH 531

Query: 478 ISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPT---YNTVLHSLVEAQESHRAMEIFKQ 534
           IS   L+      G +++  +   +  T    PT   YN ++  L + QE   A E+ K+
Sbjct: 532 ISYNTLISGYSKRGDMKDAFRVRDEMMTTGFDPTILTYNALIQGLCKNQEGEHAEELLKE 591

Query: 535 MKTCGIPPNAATYNIMID 552
           M + GI P+ +TY  +I+
Sbjct: 592 MVSKGITPDDSTYLSIIE 609



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 71/162 (43%), Gaps = 3/162 (1%)

Query: 502 DSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFK 561
           D+KT L    ++ ++ +  E ++ + A+E F  +K  G  PN  T N M+     +   +
Sbjct: 142 DAKTTL---IFDLLVRAYCELKKPNEALECFYLIKEKGFVPNIETCNQMLSLFLKLNRTQ 198

Query: 562 SASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTIL 621
            A  L + M R        T+  +I +L   G   +A   +  +   G+  +V+ YNTI+
Sbjct: 199 MAWVLYAEMFRMNIRSSLYTFNIMINVLCKEGKLKKAKEFIGHMETLGVKPNVVTYNTII 258

Query: 622 KKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
              C +G+      I + M    ++PD  T +   SG    G
Sbjct: 259 HGHCLRGKFQRARVIFQTMKDKGLEPDCYTYNSFISGLCKEG 300



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 67/153 (43%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           T N +L   ++   +  A  ++ +M    I  +  T+NIMI+        K A   +  M
Sbjct: 183 TCNQMLSLFLKLNRTQMAWVLYAEMFRMNIRSSLYTFNIMINVLCKEGKLKKAKEFIGHM 242

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
              G  P  +TY  +I      G F  A  +   +  +G+  D   YN+ +   C++GR+
Sbjct: 243 ETLGVKPNVVTYNTIIHGHCLRGKFQRARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRL 302

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
           +    +I +M +  + P+  T + +  GY N G
Sbjct: 303 EEASGLICKMLEGGLVPNAVTYNALIDGYCNKG 335



 Score = 48.1 bits (113), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 61/279 (21%), Positives = 104/279 (37%), Gaps = 35/279 (12%)

Query: 116 KEIGLNNKCYLL--MMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHS 173
           K+ GL   CY     +  LCK G LEEAS LI  + E  G+ P    YN+ +        
Sbjct: 278 KDKGLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEG-GLVPNAVTYNALIDGYCNKGD 336

Query: 174 MVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLS-AVHEIWEDYIKHYSLSIFSLRK 232
           +  A    D M S+ +  + VTY   +     +  +  A + I E   K       +   
Sbjct: 337 LDKAYAYRDEMISKGIMASLVTYNLFIHALFMEGRMGDADNMIKEMREKGMMPDAVTHNI 396

Query: 233 FVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVL 292
            +  + R  D K A+  L  MV   +   L                              
Sbjct: 397 LINGYCRCGDAKRAFGLLDEMVGKGIQPTLV----------------------------- 427

Query: 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
             +++ +I+  G+      A+ L  ++Q  GL P    ++  I    ++  +    ++LK
Sbjct: 428 --TYTSLIYVLGKRNRMKEADALFSKIQQEGLLPDIIVFNALIDGHCANGNIDRAFQLLK 485

Query: 353 IMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR 391
            M    + P + T  TL     +  +++ A  LLD++ R
Sbjct: 486 EMDNMKVLPDEITYNTLMQGYCREGKVEEARQLLDEMKR 524


>gi|359476104|ref|XP_003631789.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Vitis vinifera]
          Length = 877

 Score = 82.8 bits (203), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 90/413 (21%), Positives = 176/413 (42%), Gaps = 56/413 (13%)

Query: 289 MKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGM 348
           +K+   ++S +I A  +  NS L  +L+ +M+  G  PS  T+   I A V+     N +
Sbjct: 291 VKLDAGAYSIIIQAVCKKPNSNLGLELLEEMKERGWVPSEATFTSVIVACVAQG---NMV 347

Query: 349 EVLKIMQQ--NNLKPQDSTIAT--LSVECSKALELDLAEALLDQISR---CTNPKPFSAF 401
           E L++ ++  N  KP +  +AT  +   C++   LD A  L ++I+      N   +S  
Sbjct: 348 EALRLKEEMINCGKPMNLVVATSLMKGYCAQG-NLDSALNLFNKITEDGLFPNKVTYSVL 406

Query: 402 LAACDTMDKPERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKR 460
           +  C      E+A +++ +M+   + P +     L  L G + AP  E         A +
Sbjct: 407 IEGCCNSGNIEKASELYTQMKLNGIPPSVFNVNSL--LRGYLKAPLWE--------EASK 456

Query: 461 INAIEMDMARNNIQHSHISMK------------NLLKALGAEGMIRELIQY--------- 499
           +    +D    NI   +I M             +LL  +  +GM+  ++ Y         
Sbjct: 457 LFDEAVDCGVANIFTYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCR 516

Query: 500 ----------FCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAAT 546
                     F D       P   TY+ ++    +  +S +A+++F QM +  I P   T
Sbjct: 517 KGNMDMASSVFSDMLARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFT 576

Query: 547 YNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVS 606
           +N +I+    +     A   +   + +GF P  MTY +++   +  G+ D AL +   + 
Sbjct: 577 FNTIINGLCKVGQMSEARDKLKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMC 636

Query: 607 LEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
             G+  +V+ Y +++   C+  RID+     ++M +  ++ D +    +  G+
Sbjct: 637 EFGVSPNVVTYTSLINGFCKSNRIDLALKTRDEMREKGLELDVTAYSALIDGF 689



 Score = 80.5 bits (197), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 94/410 (22%), Positives = 174/410 (42%), Gaps = 42/410 (10%)

Query: 291 VLRWSFSD------VIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGL 344
           VLR  + D      ++ AC +      AE+   + +  G++  +  Y   I+A+      
Sbjct: 252 VLRGIYGDHFTVHVMVRACLKEGRVEEAEEYFRETKERGVKLDAGAYSIIIQAVCKKPNS 311

Query: 345 RNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPF---SAF 401
             G+E+L+ M++    P ++T  ++ V C     +  A  L +++  C  P      ++ 
Sbjct: 312 NLGLELLEEMKERGWVPSEATFTSVIVACVAQGNMVEALRLKEEMINCGKPMNLVVATSL 371

Query: 402 LAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKR 460
           +         + A+ +F K+ +  L P+  TY +L    G  N+    GN+       ++
Sbjct: 372 MKGYCAQGNLDSALNLFNKITEDGLFPNKVTYSVLIE--GCCNS----GNI-------EK 418

Query: 461 INAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLH 517
            + +   M  N I  S  ++ +LL+      +  E  + F D     G     TYN ++ 
Sbjct: 419 ASELYTQMKLNGIPPSVFNVNSLLRGYLKAPLWEEASKLF-DEAVDCGVANIFTYNIMMS 477

Query: 518 SLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKS----ASALVSMMVRD 573
            L +  +   A  +   M   G+ PN  +YN MI    +  C K     AS++ S M+  
Sbjct: 478 WLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMI----LGHCRKGNMDMASSVFSDMLAR 533

Query: 574 GFYPQTMTYTALIKILLDYGDFDEALNLLD-LVSLEGIPHDVLLYNTILKKACEKGRIDV 632
              P  +TY+ LI      GD ++AL+L D ++SL   P D   +NTI+   C+ G++  
Sbjct: 534 DLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTD-FTFNTIINGLCKVGQMSE 592

Query: 633 IEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCE 682
               ++   +    P   T + +  G++  G  +SA+        R +CE
Sbjct: 593 ARDKLKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVY-----REMCE 637



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/196 (23%), Positives = 91/196 (46%), Gaps = 3/196 (1%)

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSK---TPLGTPTYNTVLHSLVEAQE 524
           M    I   H ++  +++A   EG + E  +YF ++K     L    Y+ ++ ++ +   
Sbjct: 251 MVLRGIYGDHFTVHVMVRACLKEGRVEEAEEYFRETKERGVKLDAGAYSIIIQAVCKKPN 310

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
           S+  +E+ ++MK  G  P+ AT+  +I  C        A  L   M+  G     +  T+
Sbjct: 311 SNLGLELLEEMKERGWVPSEATFTSVIVACVAQGNMVEALRLKEEMINCGKPMNLVVATS 370

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
           L+K     G+ D ALNL + ++ +G+  + + Y+ +++  C  G I+    +  QM  N 
Sbjct: 371 LMKGYCAQGNLDSALNLFNKITEDGLFPNKVTYSVLIEGCCNSGNIEKASELYTQMKLNG 430

Query: 645 VQPDPSTCHFVFSGYV 660
           + P     + +  GY+
Sbjct: 431 IPPSVFNVNSLLRGYL 446



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 130/610 (21%), Positives = 243/610 (39%), Gaps = 107/610 (17%)

Query: 127 LMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGA-CAKLHSMVHANLCLDLMD 185
           +M++A  K G +EEA        ER G+      Y+  + A C K +S +   L L+ M 
Sbjct: 265 VMVRACLKEGRVEEAEEYFRETKER-GVKLDAGAYSIIIQAVCKKPNSNLGLEL-LEEMK 322

Query: 186 SRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKS 245
            R    +E T+T ++   V Q N+     + E+ I                        +
Sbjct: 323 ERGWVPSEATFTSVIVACVAQGNMVEALRLKEEMI------------------------N 358

Query: 246 AYETLQHMVALAMMGKLYINRTSEGRLRSS-RLDIPIPLNALPVMKVLRWSFSDVIHACG 304
             + +  +VA ++M K Y    ++G L S+  L   I  + L   KV   ++S +I  C 
Sbjct: 359 CGKPMNLVVATSLM-KGY---CAQGNLDSALNLFNKITEDGLFPNKV---TYSVLIEGCC 411

Query: 305 RTQNSGLAEQLMLQMQSLGLQPSSHTYD----GFIRAIVSDRGLRNGMEVLKIMQQNNLK 360
            + N   A +L  QM+  G+ PS    +    G+++A + +   +   E +     N   
Sbjct: 412 NSGNIEKASELYTQMKLNGIPPSVFNVNSLLRGYLKAPLWEEASKLFDEAVDCGVAN--- 468

Query: 361 PQDSTIATLSVECS---KALELDLAEALLDQ-ISRCTNPKPFS---AFLAACDTMDKPER 413
                I T ++  S   K  ++D A +LLD  +++   P   S     L  C   +  + 
Sbjct: 469 -----IFTYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNM-DM 522

Query: 414 AIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNN 472
           A  +F+ M  + L+P++ TY +L            +GN F + DS K ++  +  M   N
Sbjct: 523 ASSVFSDMLARDLKPNVVTYSILI-----------DGN-FKKGDSEKALDLFDQ-MLSLN 569

Query: 473 IQHSHISMKNLLKALGAEGMI---RELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAM 529
           I  +  +   ++  L   G +   R+ ++ F +        TYN+++   ++      A+
Sbjct: 570 IAPTDFTFNTIINGLCKVGQMSEARDKLKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSAL 629

Query: 530 EIFKQMKTCGIPPNAATY-----------------------------------NIMIDCC 554
            ++++M   G+ PN  TY                                   + +ID  
Sbjct: 630 AVYREMCEFGVSPNVVTYTSLINGFCKSNRIDLALKTRDEMREKGLELDVTAYSALIDGF 689

Query: 555 SIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDV 614
              R  +SA  L   ++  G  P  + Y ++I    D  + + AL     +  + IP D+
Sbjct: 690 CKRRDMESAQDLFFELLEVGLSPNRIVYNSMISGFRDLNNMEAALVWYKKMINDRIPCDL 749

Query: 615 LLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQV 674
             Y T++    ++GR+     +  +M    + PD  T H + +G  N G   +A + L+ 
Sbjct: 750 GTYTTLIDGLLKEGRLVFASDLYMEMLSKGIVPDIITFHVLVNGLCNKGQLENARKILEE 809

Query: 675 LSMRMLCEEV 684
           +  + +   V
Sbjct: 810 MDRKNMTPSV 819



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 117/570 (20%), Positives = 223/570 (39%), Gaps = 31/570 (5%)

Query: 108 ETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGA 167
           E +R  +E+ + L+   Y +++QA+CK         L+  + ER G  P    + S + A
Sbjct: 281 EYFRETKERGVKLDAGAYSIIIQAVCKKPNSNLGLELLEEMKER-GWVPSEATFTSVIVA 339

Query: 168 CAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAV----HEIWEDYIKHY 223
           C    +MV A    + M +     N V  T L+K    Q NL +     ++I ED +   
Sbjct: 340 CVAQGNMVEALRLKEEMINCGKPMNLVVATSLMKGYCAQGNLDSALNLFNKITEDGLFPN 399

Query: 224 SLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLY-INRTSEGRLRSSRLDIPIP 282
            ++   L   +       +++ A E    M    +   ++ +N    G L++   +    
Sbjct: 400 KVTYSVL---IEGCCNSGNIEKASELYTQMKLNGIPPSVFNVNSLLRGYLKAPLWEEASK 456

Query: 283 L--NALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVS 340
           L   A+       ++++ ++    +      A  L+  M + G+ P+  +Y+  I     
Sbjct: 457 LFDEAVDCGVANIFTYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCR 516

Query: 341 DRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPKPFS 399
              +     V   M   +LKP   T + L     K  + + A  L DQ +S    P  F+
Sbjct: 517 KGNMDMASSVFSDMLARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFT 576

Query: 400 ---AFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVD 456
                   C      E   K+   + +   P   TY  +   F       +EGN    +D
Sbjct: 577 FNTIINGLCKVGQMSEARDKLKNFLEEGFIPSCMTYNSIVDGF------IKEGN----ID 626

Query: 457 SAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQY---FCDSKTPLGTPTYN 513
           SA    A+  +M    +  + ++  +L+        I   ++      +    L    Y+
Sbjct: 627 SAL---AVYREMCEFGVSPNVVTYTSLINGFCKSNRIDLALKTRDEMREKGLELDVTAYS 683

Query: 514 TVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRD 573
            ++    + ++   A ++F ++   G+ PN   YN MI     +   ++A      M+ D
Sbjct: 684 ALIDGFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMISGFRDLNNMEAALVWYKKMIND 743

Query: 574 GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVI 633
                  TYT LI  LL  G    A +L   +  +GI  D++ ++ ++   C KG+++  
Sbjct: 744 RIPCDLGTYTTLIDGLLKEGRLVFASDLYMEMLSKGIVPDIITFHVLVNGLCNKGQLENA 803

Query: 634 EFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
             I+E+M +  + P     + + +GY   G
Sbjct: 804 RKILEEMDRKNMTPSVLIYNTLIAGYFREG 833



 Score = 47.8 bits (112), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 81/438 (18%), Positives = 177/438 (40%), Gaps = 57/438 (13%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNS-FLGACAKLHSMVHANLCLDL 183
           Y +MM  LCKGG ++EA +L+  +  + G+ P +  YN   LG C K +  + +++  D+
Sbjct: 472 YNIMMSWLCKGGKMDEACSLLDNMVNQ-GMVPNVVSYNDMILGHCRKGNMDMASSVFSDM 530

Query: 184 MDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK-HYSLSIFSLRKFVWSFTRLRD 242
           + +R +  N VTY+ L+     + +     ++++  +  + + + F+    +    ++  
Sbjct: 531 L-ARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQ 589

Query: 243 LKSAYETLQHMVALAMMGK-LYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIH 301
           +  A + L++ +    +   +  N   +G ++   +D     +AL V +           
Sbjct: 590 MSEARDKLKNFLEEGFIPSCMTYNSIVDGFIKEGNID-----SALAVYR----------- 633

Query: 302 ACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKP 361
                           +M   G+ P+  TY   I        +   ++    M++  L+ 
Sbjct: 634 ----------------EMCEFGVSPNVVTYTSLINGFCKSNRIDLALKTRDEMREKGLEL 677

Query: 362 QDSTIATLSVECSKALELDLAEAL---LDQISRCTNPKPFSAFLAACDTMDKPERAIKIF 418
             +  + L     K  +++ A+ L   L ++    N   +++ ++    ++  E A+  +
Sbjct: 678 DVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMISGFRDLNNMEAALVWY 737

Query: 419 AKMRQKLRP-DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSH 477
            KM     P D+ TY  L      ++   +EG +    D       + M+M    I    
Sbjct: 738 KKMINDRIPCDLGTYTTL------IDGLLKEGRLVFASD-------LYMEMLSKGIVPDI 784

Query: 478 ISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPT---YNTVLHSLVEAQESHRAMEIFKQ 534
           I+   L+  L  +G +    +   +      TP+   YNT++           A  +  +
Sbjct: 785 ITFHVLVNGLCNKGQLENARKILEEMDRKNMTPSVLIYNTLIAGYFREGNLKEAFTLHDE 844

Query: 535 MKTCGIPPNAATYNIMID 552
           M   G+ P+  TY+I+I+
Sbjct: 845 MLDRGLVPDDVTYDILIN 862



 Score = 40.4 bits (93), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 35/164 (21%), Positives = 66/164 (40%), Gaps = 3/164 (1%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
            +N +L++ + A     A++ F  M    + P     NI++              L + M
Sbjct: 192 VFNYLLNAYIRANRIENAIDCFNAMICQDVIPWVPYMNILLTALVRRNMIGELRDLYNKM 251

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           V  G Y    T   +++  L  G  +EA          G+  D   Y+ I++  C+K   
Sbjct: 252 VLRGIYGDHFTVHVMVRACLKEGRVEEAEEYFRETKERGVKLDAGAYSIIIQAVCKKPNS 311

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQV 674
           ++   ++E+M +    P  +T   V    V C    + +EAL++
Sbjct: 312 NLGLELLEEMKERGWVPSEATFTSVI---VACVAQGNMVEALRL 352


>gi|356518398|ref|XP_003527866.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 603

 Score = 82.8 bits (203), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 88/400 (22%), Positives = 164/400 (41%), Gaps = 25/400 (6%)

Query: 296 FSDVIHACGRTQNSGLAEQLML--QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           F+  IH     +N  L E L    +M   G  P        IR        R    +++I
Sbjct: 108 FASNIHLRKLVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTRKATRIMEI 167

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAA-CDTMDKPE 412
           ++ +   P   T   L     K+ E+D A  +L+++S   +   ++  L + CD+  K +
Sbjct: 168 LENSGAVPDVITYNVLIGGYCKSGEIDKALQVLERMSVAPDVVTYNTILRSLCDS-GKLK 226

Query: 413 RAIKIFAK-MRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471
            A+++  + M+++  PD+ TY +L     N +   +   +  ++    R    + D+   
Sbjct: 227 EAMEVLDRQMQRECYPDVITYTILIEATCNDSGVGQAMKLLDEM----RKKGCKPDVVTY 282

Query: 472 NIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPL-----GTPTYNTVLHSLVEAQESH 526
           N+         L+  +  EG + E I++   +  PL        T+N +L S+       
Sbjct: 283 NV---------LINGICKEGRLDEAIKFL--NNMPLYGCQPNVITHNIILRSMCSTGRWM 331

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
            A  +   M   G  P+  T+NI+I+     R    A  ++  M + G  P +++Y  L+
Sbjct: 332 DAERLLADMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCMPNSLSYNPLL 391

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
                    D A+  L+++   G   D++ YNT+L   C+ G+ D    I+ Q+      
Sbjct: 392 HGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKADAAVEILNQLSSKGCS 451

Query: 647 PDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           P   T + V  G    G    A E L+ +  + L  ++ T
Sbjct: 452 PVLITYNTVIDGLTKVGKTEYAAELLEEMRRKGLKPDIIT 491



 Score = 73.2 bits (178), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 96/437 (21%), Positives = 178/437 (40%), Gaps = 29/437 (6%)

Query: 128 MMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSR 187
           +++  C+ G   +A+ ++  L E  G  P +  YN  +G   K   +  A   L +++  
Sbjct: 148 LIRGFCRSGKTRKATRIMEIL-ENSGAVPDVITYNVLIGGYCKSGEIDKA---LQVLERM 203

Query: 188 MVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSL-SIFSLRKFVWSFTRLRDLKSA 246
            V  + VTY  +L+       L    E+ +  ++      + +    + +      +  A
Sbjct: 204 SVAPDVVTYNTILRSLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCNDSGVGQA 263

Query: 247 YETLQHMVALAMMGKLYI-NRTSEGRLRSSRLDIPIP-LNALPVMKVLR--WSFSDVIHA 302
            + L  M        +   N    G  +  RLD  I  LN +P+        + + ++ +
Sbjct: 264 MKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPLYGCQPNVITHNIILRS 323

Query: 303 CGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQ 362
              T     AE+L+  M   G  PS  T++  I  +   R L   ++VL+ M ++   P 
Sbjct: 324 MCSTGRWMDAERLLADMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCMPN 383

Query: 363 DSTIATLSVECSKALELDLA-EALLDQISRCTNPK--PFSAFLAACDTMDKPERAIKIFA 419
             +   L     +  ++D A E L   +SR   P    ++  L A     K + A++I  
Sbjct: 384 SLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKADAAVEILN 443

Query: 420 KMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHI 478
           ++  K   P + TY  +              +  ++V   +    +  +M R  ++   I
Sbjct: 444 QLSSKGCSPVLITYNTVI-------------DGLTKVGKTEYAAELLEEMRRKGLKPDII 490

Query: 479 SMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQM 535
           +   LL+ LG EG + E I+ F D +     P   TYN ++  L +AQ++ RA++    M
Sbjct: 491 TYSTLLRGLGCEGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYM 550

Query: 536 KTCGIPPNAATYNIMID 552
              G  P  ATY I+I+
Sbjct: 551 VEKGCKPTKATYTILIE 567



 Score = 70.5 bits (171), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 78/325 (24%), Positives = 139/325 (42%), Gaps = 24/325 (7%)

Query: 326 PSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEAL 385
           P   TY   I A  +D G+   M++L  M++   KP   T   L     K   LD A   
Sbjct: 242 PDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKF 301

Query: 386 LDQIS--RC-TNPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGN 441
           L+ +    C  N    +  L +  +  +   A ++ A M R+   P + T+ +L +    
Sbjct: 302 LNNMPLYGCQPNVITHNIILRSMCSTGRWMDAERLLADMLRKGCSPSVVTFNILINF--- 358

Query: 442 VNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFC 501
                    +  +    + I+ +E  M ++    + +S   LL     E  +   I+Y  
Sbjct: 359 ---------LCRKRLLGRAIDVLE-KMPKHGCMPNSLSYNPLLHGFCQEKKMDRAIEYLE 408

Query: 502 DSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIR 558
              +    P   TYNT+L +L +  ++  A+EI  Q+ + G  P   TYN +ID  + + 
Sbjct: 409 IMVSRGCYPDIVTYNTLLTALCKDGKADAAVEILNQLSSKGCSPVLITYNTVIDGLTKVG 468

Query: 559 CFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYN 618
             + A+ L+  M R G  P  +TY+ L++ L   G  DEA+ +   +    I    + YN
Sbjct: 469 KTEYAAELLEEMRRKGLKPDIITYSTLLRGLGCEGKVDEAIKIFHDMEGLSIKPSAVTYN 528

Query: 619 TILKKACEKGR----IDVIEFIIEQ 639
            I+   C+  +    ID + +++E+
Sbjct: 529 AIMLGLCKAQQTSRAIDFLAYMVEK 553



 Score = 44.7 bits (104), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 57/263 (21%), Positives = 109/263 (41%), Gaps = 18/263 (6%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGER--YGIYPILPVYNSFLGACAKLHSMVHANLCLD 182
           Y +++  +CK G L+EA   I FL     YG  P +  +N  L +       + A   L 
Sbjct: 282 YNVLINGICKEGRLDEA---IKFLNNMPLYGCQPNVITHNIILRSMCSTGRWMDAERLLA 338

Query: 183 LMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSL-SIFSLRKFVWSFTRLR 241
            M  +    + VT+  L+     ++ L    ++ E   KH  + +  S    +  F + +
Sbjct: 339 DMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCMPNSLSYNPLLHGFCQEK 398

Query: 242 DLKSAYETLQHMVALAMMGKLYINRTSEGRL-RSSRLDIPIP-LNAL------PVMKVLR 293
            +  A E L+ MV+      +    T    L +  + D  +  LN L      PV+    
Sbjct: 399 KMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKADAAVEILNQLSSKGCSPVL---- 454

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
            +++ VI    +   +  A +L+ +M+  GL+P   TY   +R +  +  +   +++   
Sbjct: 455 ITYNTVIDGLTKVGKTEYAAELLEEMRRKGLKPDIITYSTLLRGLGCEGKVDEAIKIFHD 514

Query: 354 MQQNNLKPQDSTIATLSVECSKA 376
           M+  ++KP   T   + +   KA
Sbjct: 515 MEGLSIKPSAVTYNAIMLGLCKA 537


>gi|222612845|gb|EEE50977.1| hypothetical protein OsJ_31558 [Oryza sativa Japonica Group]
          Length = 1263

 Score = 82.8 bits (203), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 84/403 (20%), Positives = 176/403 (43%), Gaps = 26/403 (6%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           +S++  I   G+ +    A +++ +M++ G +P   T+   I+ +     + +  +V   
Sbjct: 356 YSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWK 415

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPER 413
           M++++ KP   T  TL  +     +      + + +          A+ A  D + +  R
Sbjct: 416 MKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGR 475

Query: 414 ---AIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVD-SAKRINAIEMDM 468
              A+++F +M+QK + P+  +Y  L S F   +   +   +F  +D    + N     +
Sbjct: 476 VFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHGPKPNGYTHVL 535

Query: 469 ARNNIQHSHISMKNLLKA--LGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESH 526
             N    S  S+K + +   + ++G++ +++               N VL  L ++    
Sbjct: 536 FINYYGKSGESIKAIQRYELMKSKGIVPDVV-------------AGNAVLFGLAKSGRLG 582

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
            A  +F ++K  G+ P+  TY +MI CCS    F  A  +   M+ +   P  +   +LI
Sbjct: 583 MAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLI 642

Query: 587 KILLDYGDFDEALNL---LDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
             L   G  DEA  +   L  ++LE  P D   YNT+L     +G++  +  ++E+M+ +
Sbjct: 643 DTLYKAGRGDEAWRIFYQLKEMNLE--PTDG-TYNTLLAGLGREGKVKEVMHLLEEMYHS 699

Query: 644 KVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
              P+  T + +       G  N A++ L  ++ +    ++S+
Sbjct: 700 NYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSS 742



 Score = 79.0 bits (193), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 89/424 (20%), Positives = 171/424 (40%), Gaps = 62/424 (14%)

Query: 239 RLRDLKSAYETLQHMVALAMMGK---LYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWS 295
           R+ D+   ++ +Q  +  A +G    ++     EG LRS+    P+   ALPVMK     
Sbjct: 230 RVGDMAEVFDVMQRQIVKANVGTFAAIFGGLGVEGGLRSA----PV---ALPVMK----- 277

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
                                      G+  +++TY+G +  +V     R  +EV ++M 
Sbjct: 278 -------------------------EAGIVLNAYTYNGLVYFLVKSGFDREALEVYRVMM 312

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQI-SRCTNPKPFSAFLAACDTMDKPER- 413
            + + P   T + L V   K  +++    LL ++ +    P  +S +      + + +R 
Sbjct: 313 VDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYS-YTICIRVLGQAKRF 371

Query: 414 --AIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
             A +I AKM  +  +PD+ T+ +L  +  +     +  ++F +             M +
Sbjct: 372 DEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWK-------------MKK 418

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPL---GTPTYNTVLHSLVEAQESHR 527
           ++ +   ++   LL   G  G  + +++ +   K          Y  V+ +L +      
Sbjct: 419 SDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFE 478

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A+E+F +MK  GI P   +YN +I        F  A  L   M   G  P   T+   I 
Sbjct: 479 ALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFIN 538

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
                G+  +A+   +L+  +GI  DV+  N +L    + GR+ + + +  ++    V P
Sbjct: 539 YYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSP 598

Query: 648 DPST 651
           D  T
Sbjct: 599 DTIT 602



 Score = 75.9 bits (185), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 97/206 (47%), Gaps = 3/206 (1%)

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIREL---IQYFCDSKTPLGTPTYNTVLHSLVEAQE 524
           M R  ++ +  +   +   LG EG +R     +    ++   L   TYN +++ LV++  
Sbjct: 241 MQRQIVKANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLVYFLVKSGF 300

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
              A+E+++ M   G+ P+  TY++++      R  ++   L+  M   G  P   +YT 
Sbjct: 301 DREALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTI 360

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
            I++L     FDEA  +L  +  EG   DV+ +  +++  C+ GRI   + +  +M ++ 
Sbjct: 361 CIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSD 420

Query: 645 VQPDPSTCHFVFSGYVNCGFHNSAME 670
            +PD  T   +   + + G   S ME
Sbjct: 421 QKPDRVTYITLLDKFGDNGDSQSVME 446



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 148/720 (20%), Positives = 264/720 (36%), Gaps = 120/720 (16%)

Query: 55   TQMQIVDALCRGER-SRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMM 113
            T   ++  LC   R S A  +   +  +        +  +L+    + D   VME W  M
Sbjct: 392  THTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAM 451

Query: 114  EEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHS 173
            +      N   Y  ++ ALC+ G + EA  +   + ++ GI P    YNS +    K   
Sbjct: 452  KADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQK-GIVPEQYSYNSLISGFLKADR 510

Query: 174  MVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWE-----------DYIKH 222
               A      MD  + G     YT +L +  + K+  ++  I             D +  
Sbjct: 511  FGDALELFKHMD--IHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAG 568

Query: 223  YSLSIFSLRKFVWSFTRLRDLKSAYETLQHM------VALAMMGKLYINRTSEGRLRSSR 276
             ++ +F L K      RL   K  +  L+ M      +   MM K           ++S+
Sbjct: 569  NAV-LFGLAKS----GRLGMAKRVFHELKAMGVSPDTITYTMMIKCCS--------KASK 615

Query: 277  LDIPIPL-------NALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSH 329
             D  + +       N +P +  +  S  D ++  GR      A ++  Q++ + L+P+  
Sbjct: 616  FDEAVKIFYDMIENNCVPDVLAVN-SLIDTLYKAGRGDE---AWRIFYQLKEMNLEPTDG 671

Query: 330  TYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIAT-LSVECSKALELDLAEALLDQ 388
            TY+  +  +  +  ++  M +L+ M  +N  P   T  T L   C      D  + L   
Sbjct: 672  TYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSM 731

Query: 389  ISRCTNPKPFSAFLAACDTMDKPER---AIKIFAKMRQKLRPDIRTYELLFSLFGNVNAP 445
             ++   P   S++      + K ER   A  IF +M++ L PD  T   +   F  +   
Sbjct: 732  TTKGCIPD-LSSYNTVIYGLVKEERYNEAFSIFCQMKKVLIPDYATLCTILPSFVKIGLM 790

Query: 446  YEEGNMF--------SQVDSAKRINAIEMDMARNNIQHS----------HISMKNLL--- 484
             E  ++         S+ D +   + +E  + +  I+ S           I++ +     
Sbjct: 791  KEALHIIKDYFLQPGSKTDRSSCHSLMEGILKKAGIEKSIEFAEIIASSGITLDDFFLCP 850

Query: 485  ---------KALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQM 535
                     KAL A     EL++ F      L T  YN+++  LV+      A  +F +M
Sbjct: 851  LIKHLCKQKKALEAH----ELVKKFKSFGVSLKTGLYNSLICGLVDENLIDIAEGLFAEM 906

Query: 536  KTCGIPPNAATYNIMIDCC-----------------------------SII------RCF 560
            K  G  P+  TYN+++D                               +II      R  
Sbjct: 907  KELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRL 966

Query: 561  KSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTI 620
            + A  L   ++  GF P   TY  L+  LL  G  ++A NL + +   G   +  +YN +
Sbjct: 967  EQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNIL 1026

Query: 621  LKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEAL-QVLSMRM 679
            L      G  + +  + + M    + PD  +   +       G  N  +    Q+L M +
Sbjct: 1027 LNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGL 1086



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 122/601 (20%), Positives = 228/601 (37%), Gaps = 74/601 (12%)

Query: 112 MMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKL 171
           +M+E  I LN   Y  ++  L K G+  EA   +Y +    G+ P +  Y+  + A  K 
Sbjct: 275 VMKEAGIVLNAYTYNGLVYFLVKSGFDREALE-VYRVMMVDGVVPSVRTYSVLMVAFGKR 333

Query: 172 HSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIW---------EDYIKH 222
             +      L  M++  V  N  +YT  +++    K     + I           D I H
Sbjct: 334 RDVETVLWLLREMEAHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITH 393

Query: 223 YSL--------SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRS 274
             L         I   +   W       +K + +    +  + ++ K   N  S+     
Sbjct: 394 TVLIQVLCDAGRISDAKDVFWK------MKKSDQKPDRVTYITLLDKFGDNGDSQ----- 442

Query: 275 SRLDIPIPLNALPVMKVLRW-----SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSH 329
           S ++I    NA   MK   +     +++ VI A  +      A ++  +M+  G+ P  +
Sbjct: 443 SVMEI---WNA---MKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQY 496

Query: 330 TYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL---------SVECSKALELD 380
           +Y+  I   +      + +E+ K M  +  KP   T             S++  +  EL 
Sbjct: 497 SYNSLISGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELM 556

Query: 381 LAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLF 439
            ++ ++  +         +A L       +   A ++F +++   + PD  TY ++    
Sbjct: 557 KSKGIVPDVV------AGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCC 610

Query: 440 GNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQY 499
                        S+ D A +I     DM  NN     +++ +L+  L   G   E  + 
Sbjct: 611 SKA----------SKFDEAVKIF---YDMIENNCVPDVLAVNSLIDTLYKAGRGDEAWRI 657

Query: 500 FCDSKTPLGTPT---YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSI 556
           F   K     PT   YNT+L  L    +    M + ++M     PPN  TYN ++DC   
Sbjct: 658 FYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCK 717

Query: 557 IRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLL 616
                 A  ++  M   G  P   +Y  +I  L+    ++EA ++   +    IP D   
Sbjct: 718 NGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQMKKVLIP-DYAT 776

Query: 617 YNTILKKACEKGRI-DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
             TIL    + G + + +  I +   Q   + D S+CH +  G +       ++E  +++
Sbjct: 777 LCTILPSFVKIGLMKEALHIIKDYFLQPGSKTDRSSCHSLMEGILKKAGIEKSIEFAEII 836

Query: 676 S 676
           +
Sbjct: 837 A 837



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 66/322 (20%), Positives = 126/322 (39%), Gaps = 43/322 (13%)

Query: 311  LAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLS 370
            +AE L  +M+ LG  P   TY+  + A+     +    E+LK+ ++ + K  +ST  T  
Sbjct: 898  IAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIE---EMLKVQEEMHRKGYESTYVT-- 952

Query: 371  VECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAK-MRQKLRPDI 429
                                       ++  ++      + E+AI ++   M Q   P  
Sbjct: 953  ---------------------------YNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTP 985

Query: 430  RTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGA 489
             TY  L           +  N+F+++        +E     N   ++   + N  +  G 
Sbjct: 986  CTYGPLLDGLLKAGRIEDAENLFNEM--------LEYGCKANCTIYN--ILLNGHRIAGN 1035

Query: 490  EGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNI 549
               +  L Q   D        +Y  ++ +L +A + +  +  F+Q+   G+ P+  TYN+
Sbjct: 1036 TEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNL 1095

Query: 550  MIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEG 609
            +ID     +  + A +L + M + G  P   TY +LI  L   G   EA  + + +  +G
Sbjct: 1096 LIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLTKG 1155

Query: 610  IPHDVLLYNTILKKACEKGRID 631
               +V  YN +++     G  D
Sbjct: 1156 WKPNVFTYNALIRGYSVSGSTD 1177



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 81/183 (44%), Gaps = 4/183 (2%)

Query: 489  AEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYN 548
            AE +  E+++Y C +   +    YN +L+    A  + +   +F+ M   GI P+  +Y 
Sbjct: 1004 AENLFNEMLEYGCKANCTI----YNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYT 1059

Query: 549  IMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLE 608
            I+ID                 ++  G  P  +TY  LI  L      +EA++L + +  +
Sbjct: 1060 IIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKK 1119

Query: 609  GIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSA 668
            GI  ++  YN+++    + G+      + E++     +P+  T + +  GY   G  +SA
Sbjct: 1120 GIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLTKGWKPNVFTYNALIRGYSVSGSTDSA 1179

Query: 669  MEA 671
              A
Sbjct: 1180 YAA 1182



 Score = 48.9 bits (115), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 32/148 (21%), Positives = 68/148 (45%)

Query: 511  TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
            TYNT++  LV+++   +A++++  + + G  P   TY  ++D        + A  L + M
Sbjct: 952  TYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEM 1011

Query: 571  VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
            +  G       Y  L+      G+ ++  +L   +  +GI  D+  Y  I+   C+ G++
Sbjct: 1012 LEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQL 1071

Query: 631  DVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
            +       Q+ +  ++PD  T + +  G
Sbjct: 1072 NDGLTYFRQLLEMGLEPDLITYNLLIDG 1099


>gi|357499777|ref|XP_003620177.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495192|gb|AES76395.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 612

 Score = 82.8 bits (203), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 63/275 (22%), Positives = 125/275 (45%), Gaps = 23/275 (8%)

Query: 394 NPKP----FSAFLAACDTMDKPERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEE 448
           NP P    F   L +   ++  + AI +  +M    +  D+ T+ +L             
Sbjct: 51  NPTPPIFEFGKILGSLVKINCYQTAISLHREMEFNGIASDLVTFNILI------------ 98

Query: 449 GNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLG 508
            N FSQ+       ++  ++ +   + + I++  L+K L  +G I + + +F D    LG
Sbjct: 99  -NCFSQLGHTHFSFSVFANILKKGYEPNAITLTTLIKGLCLKGQIHQAL-HFHDKVVALG 156

Query: 509 ----TPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSAS 564
                  Y T+++ L +  ++  A+++ +++    + PN   YN +ID    ++    A 
Sbjct: 157 FHLNKVCYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAF 216

Query: 565 ALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKA 624
            L S MV  G  P  +TY+ALI      G  ++A+ L + +  E I  DV  ++ ++   
Sbjct: 217 DLYSEMVSKGISPDVVTYSALISGFCILGKLNDAIGLFNKMISEEINPDVYTFSILVDGF 276

Query: 625 CEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
           C++GR+   + ++  M +  ++PD  T   +  GY
Sbjct: 277 CKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGY 311



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 68/280 (24%), Positives = 119/280 (42%), Gaps = 48/280 (17%)

Query: 387 DQISRCTNPK--PFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVN 443
           + +S+  +P    +SA ++    + K   AI +F KM  +++ PD+ T+ +L      V+
Sbjct: 221 EMVSKGISPDVVTYSALISGFCILGKLNDAIGLFNKMISEEINPDVYTFSIL------VD 274

Query: 444 APYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDS 503
              +EG    +V  AK + A+ M                       +G+  +++      
Sbjct: 275 GFCKEG----RVKEAKNVLAMMM----------------------KQGIKPDVV------ 302

Query: 504 KTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSA 563
                  TY +++      ++ ++A  IF  M   G+  N  +YNIMI+    I+    A
Sbjct: 303 -------TYCSLMDGYCLVKQVNKAKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVDEA 355

Query: 564 SALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKK 623
             L   M      P  +TY +LI  L   G    AL L+D +   G+PHD + YN+IL  
Sbjct: 356 MNLFKEMHCKNIIPDVVTYNSLIDGLCKSGKISYALKLVDEMHDRGVPHDKITYNSILDA 415

Query: 624 ACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
            C+  ++D    ++ +M    +QPD  T   +  G    G
Sbjct: 416 LCKNHQVDKAIALLTKMKDEGIQPDMYTYTILIDGLCKGG 455



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 78/364 (21%), Positives = 152/364 (41%), Gaps = 16/364 (4%)

Query: 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
           +  +  +I+   +   +  A QL+ ++    +QP+   Y+  I ++   + +    ++  
Sbjct: 161 KVCYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYS 220

Query: 353 IMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPK--PFSAFLAACDTMD 409
            M    + P   T + L        +L+ A  L ++ IS   NP    FS  +       
Sbjct: 221 EMVSKGISPDVVTYSALISGFCILGKLNDAIGLFNKMISEEINPDVYTFSILVDGFCKEG 280

Query: 410 KPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI-NAIEMD 467
           + + A  + A M +Q ++PD+ TY  L   +           +  QV+ AK I N +   
Sbjct: 281 RVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYC----------LVKQVNKAKSIFNTMAQG 330

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHR 527
               N+Q  +I +    K    +  +    +  C +  P    TYN+++  L ++ +   
Sbjct: 331 GVTANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIP-DVVTYNSLIDGLCKSGKISY 389

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A+++  +M   G+P +  TYN ++D          A AL++ M  +G  P   TYT LI 
Sbjct: 390 ALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDMYTYTILID 449

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
            L   G   +A N+ + + ++G    V  Y  +++  C+    D    ++ +M  N   P
Sbjct: 450 GLCKGGRLKDAQNIFEDLLVKGYNITVYTYTVMIQGFCDNDLFDKALALLSKMEDNGCIP 509

Query: 648 DPST 651
           +  T
Sbjct: 510 NAKT 513



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/175 (22%), Positives = 84/175 (48%)

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           YNT++ S+ + +  + A +++ +M + GI P+  TY+ +I    I+     A  L + M+
Sbjct: 199 YNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYSALISGFCILGKLNDAIGLFNKMI 258

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
            +   P   T++ L+      G   EA N+L ++  +GI  DV+ Y +++   C   +++
Sbjct: 259 SEEINPDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYCLVKQVN 318

Query: 632 VIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
             + I   M Q  V  +  + + + +G+      + AM   + +  + +  +V T
Sbjct: 319 KAKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVT 373



 Score = 54.3 bits (129), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 75/175 (42%), Gaps = 4/175 (2%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           T+N +++   +   +H +  +F  +   G  PNA T   +I    +      A      +
Sbjct: 93  TFNILINCFSQLGHTHFSFSVFANILKKGYEPNAITLTTLIKGLCLKGQIHQALHFHDKV 152

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           V  GF+   + Y  LI  L   G    AL LL  V  + +  +V++YNTI+   C+   +
Sbjct: 153 VALGFHLNKVCYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLV 212

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVS 685
           +    +  +M    + PD  T   + SG+   G  N A+        +M+ EE++
Sbjct: 213 NEAFDLYSEMVSKGISPDVVTYSALISGFCILGKLNDAIGLFN----KMISEEIN 263


>gi|225428276|ref|XP_002279589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g17140
           [Vitis vinifera]
 gi|297744485|emb|CBI37747.3| unnamed protein product [Vitis vinifera]
          Length = 878

 Score = 82.8 bits (203), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 88/402 (21%), Positives = 162/402 (40%), Gaps = 25/402 (6%)

Query: 281 IPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVS 340
           +P N  PV     + ++ V+ +  R         L   M   G+ P ++T +  I  +  
Sbjct: 109 VPANPPPV-----YLYNMVLESSLREDKVDSFSWLYKDMVVAGVSPETYTLNLLIAGLCD 163

Query: 341 DRGLRNGMEVLKIMQQNNLKPQDSTIATL-SVECSKALELDLAEALLDQISRCTNPKP-- 397
                +  EV   M     +P + +   L    C   L +   E L    S    P    
Sbjct: 164 SGRFEDAREVFDKMGVKGCRPNEFSFGILVRGYCRAGLSMRALELLDGMGSFGVQPNKVI 223

Query: 398 FSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFS--Q 454
           ++  +++     + E A ++  +MR+  L PD+ T+    S   +     E   +F   Q
Sbjct: 224 YNTLISSFCREGRNEEAERLVERMREDGLFPDVVTFNSRISALCSAGKILEASRIFRDMQ 283

Query: 455 VDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPT 511
           +D        E+ + R NI   ++ ++   K    EGM+ E   L++    +   +   +
Sbjct: 284 IDE-------ELGLPRPNITTFNLMLEGFCK----EGMLEEAKTLVESMKRNGNLMELES 332

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           YN  L  LV   +   A    K+M   GI PN  ++N ++D          A  ++ +M+
Sbjct: 333 YNIWLLGLVRNGKLLEAQLALKEMVDKGIEPNIYSFNTVMDGLCKNGLISDARMIMGLMI 392

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
             G  P T+TY+ L+      G   +A N+L  +   G   +    N +L    ++GRI 
Sbjct: 393 SSGIGPDTVTYSTLLHGCCSTGKVLKANNILHEMMRRGCSPNTYTCNILLHSLWKEGRIF 452

Query: 632 VIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
             E ++++M++     D  TC+ V  G    G  + A+E ++
Sbjct: 453 EAEKLLQKMNERSYDLDNVTCNIVIDGLCKSGKLDEAVEIVE 494



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 86/342 (25%), Positives = 149/342 (43%), Gaps = 28/342 (8%)

Query: 312 AEQLMLQMQSLGLQPSSHTYD----GFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIA 367
           A ++  +M   G +P+  ++     G+ RA +S R L    E+L  M    ++P      
Sbjct: 170 AREVFDKMGVKGCRPNEFSFGILVRGYCRAGLSMRAL----ELLDGMGSFGVQPNKVIYN 225

Query: 368 TLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKPERAIKIFAKMR-- 422
           TL     +    + AE L++++       +   F++ ++A  +  K   A +IF  M+  
Sbjct: 226 TLISSFCREGRNEEAERLVERMREDGLFPDVVTFNSRISALCSAGKILEASRIFRDMQID 285

Query: 423 QKL---RPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHIS 479
           ++L   RP+I T+ L+   F       E   +   V+S KR N   M++   NI    + 
Sbjct: 286 EELGLPRPNITTFNLMLEGFCKEGMLEEAKTL---VESMKR-NGNLMELESYNIWLLGLV 341

Query: 480 MKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCG 539
                K L A+  ++E++    D        ++NTV+  L +      A  I   M + G
Sbjct: 342 RNG--KLLEAQLALKEMV----DKGIEPNIYSFNTVMDGLCKNGLISDARMIMGLMISSG 395

Query: 540 IPPNAATYNIMI-DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEA 598
           I P+  TY+ ++  CCS  +  K+ + L  MM R G  P T T   L+  L   G   EA
Sbjct: 396 IGPDTVTYSTLLHGCCSTGKVLKANNILHEMM-RRGCSPNTYTCNILLHSLWKEGRIFEA 454

Query: 599 LNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQM 640
             LL  ++      D +  N ++   C+ G++D    I+E M
Sbjct: 455 EKLLQKMNERSYDLDNVTCNIVIDGLCKSGKLDEAVEIVEGM 496



 Score = 58.9 bits (141), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 105/557 (18%), Positives = 220/557 (39%), Gaps = 44/557 (7%)

Query: 91  FHIL--NYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFL 148
           F IL   YC R+   +  +E    M    +  N   Y  ++ + C+ G  EEA  L+  +
Sbjct: 189 FGILVRGYC-RAGLSMRALELLDGMGSFGVQPNKVIYNTLISSFCREGRNEEAERLVERM 247

Query: 149 GERYGIYPILPVYNSFLGA-CAKLHSMVHANLCLDLMDSRMVG---KNEVTYTELLKLAV 204
            E  G++P +  +NS + A C+    +  + +  D+     +G    N  T+  +L+   
Sbjct: 248 RED-GLFPDVVTFNSRISALCSAGKILEASRIFRDMQIDEELGLPRPNITTFNLMLEGFC 306

Query: 205 WQKNLSAVHEIWEDYIKHYSL-SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLY 263
            +  L     + E   ++ +L  + S   ++    R   L  A   L+ MV   +   +Y
Sbjct: 307 KEGMLEEAKTLVESMKRNGNLMELESYNIWLLGLVRNGKLLEAQLALKEMVDKGIEPNIY 366

Query: 264 -INRTSEGRLRSSRLDIPIPLNALPVMKVL---RWSFSDVIHACGRTQNSGLAEQLMLQM 319
             N   +G  ++  +     +  L +   +     ++S ++H C  T     A  ++ +M
Sbjct: 367 SFNTVMDGLCKNGLISDARMIMGLMISSGIGPDTVTYSTLLHGCCSTGKVLKANNILHEM 426

Query: 320 QSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALEL 379
              G  P+++T +  + ++  +  +    ++L+ M + +    + T   +     K+ +L
Sbjct: 427 MRRGCSPNTYTCNILLHSLWKEGRIFEAEKLLQKMNERSYDLDNVTCNIVIDGLCKSGKL 486

Query: 380 DLAEALLDQI---SRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLF 436
           D A  +++ +            ++F+   D+    ++ +           PD+ TY ++ 
Sbjct: 487 DEAVEIVEGMWIHGSAALGNLGNSFIGLVDSSSNGKKCL-----------PDLITYSII- 534

Query: 437 SLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIREL 496
                +N   + G    ++D A++     ++M   ++    I     + +    G I   
Sbjct: 535 -----INGLCKAG----RLDEARKKF---IEMVGKSLHPDSIIYDTFIHSFCKHGKISSA 582

Query: 497 IQYFCDSKT---PLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC 553
            +   D +         TYN+++  L    +      +   MK  GI PN  TYN MI C
Sbjct: 583 FRVLKDMEKRGCNKSLQTYNSLILGLGSKNQIFEIYGLLDDMKEKGITPNICTYNNMISC 642

Query: 554 CSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHD 613
                  K A++L+  M++ G  P   ++  LIK      DF     + + ++L    H 
Sbjct: 643 LCEGGRIKDATSLLDEMLQKGISPNISSFRLLIKAFCKASDFGVVKEVFE-IALSICGHK 701

Query: 614 VLLYNTILKKACEKGRI 630
             LY+ +  +    G +
Sbjct: 702 EALYSLMFNELLIGGEV 718



 Score = 52.8 bits (125), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 77/389 (19%), Positives = 149/389 (38%), Gaps = 35/389 (8%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIAT-LS 370
           A+ L+  M+  G      +Y+ ++  +V +  L      LK M    ++P   +  T + 
Sbjct: 314 AKTLVESMKRNGNLMELESYNIWLLGLVRNGKLLEAQLALKEMVDKGIEPNIYSFNTVMD 373

Query: 371 VECSKALELDLAEALLDQISRCTNPKP--FSAFLAACDTMDKPERAIKIFAKM-RQKLRP 427
             C   L  D    +   IS    P    +S  L  C +  K  +A  I  +M R+   P
Sbjct: 374 GLCKNGLISDARMIMGLMISSGIGPDTVTYSTLLHGCCSTGKVLKANNILHEMMRRGCSP 433

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL 487
           +  T  +L      +++ ++EG +F      +++N    D+  +N+   +I +  L K+ 
Sbjct: 434 NTYTCNIL------LHSLWKEGRIFEAEKLLQKMNERSYDL--DNVT-CNIVIDGLCKSG 484

Query: 488 GAEGMIRELIQYFCDSKTPLGT----------------------PTYNTVLHSLVEAQES 525
             +  +  +   +      LG                        TY+ +++ L +A   
Sbjct: 485 KLDEAVEIVEGMWIHGSAALGNLGNSFIGLVDSSSNGKKCLPDLITYSIIINGLCKAGRL 544

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
             A + F +M    + P++  Y+  I          SA  ++  M + G      TY +L
Sbjct: 545 DEARKKFIEMVGKSLHPDSIIYDTFIHSFCKHGKISSAFRVLKDMEKRGCNKSLQTYNSL 604

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           I  L       E   LLD +  +GI  ++  YN ++   CE GRI     ++++M Q  +
Sbjct: 605 ILGLGSKNQIFEIYGLLDDMKEKGITPNICTYNNMISCLCEGGRIKDATSLLDEMLQKGI 664

Query: 646 QPDPSTCHFVFSGYVNCGFHNSAMEALQV 674
            P+ S+   +   +          E  ++
Sbjct: 665 SPNISSFRLLIKAFCKASDFGVVKEVFEI 693



 Score = 49.7 bits (117), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 95/454 (20%), Positives = 170/454 (37%), Gaps = 43/454 (9%)

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
           M +K I  N   +  +M  LCK G + +A  +I  L    GI P    Y++ L  C    
Sbjct: 356 MVDKGIEPNIYSFNTVMDGLCKNGLISDA-RMIMGLMISSGIGPDTVTYSTLLHGCCSTG 414

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKN--LSAVHEIWEDYIKHYSLSIFSL 230
            ++ AN  L  M  R    N  T   LL  ++W++     A   + +   + Y L   + 
Sbjct: 415 KVLKANNILHEMMRRGCSPNTYTCNILLH-SLWKEGRIFEAEKLLQKMNERSYDLDNVTC 473

Query: 231 RKFVWSFTRLRDLKSAYETLQHM-----VALAMMGKLYI---NRTSEGRLRSSRLDIPIP 282
              +    +   L  A E ++ M      AL  +G  +I   + +S G+           
Sbjct: 474 NIVIDGLCKSGKLDEAVEIVEGMWIHGSAALGNLGNSFIGLVDSSSNGK----------- 522

Query: 283 LNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDR 342
              LP +     ++S +I+   +      A +  ++M    L P S  YD FI +     
Sbjct: 523 -KCLPDL----ITYSIIINGLCKAGRLDEARKKFIEMVGKSLHPDSIIYDTFIHSFCKHG 577

Query: 343 GLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFS 399
            + +   VLK M++        T  +L +      ++     LLD +       N   ++
Sbjct: 578 KISSAFRVLKDMEKRGCNKSLQTYNSLILGLGSKNQIFEIYGLLDDMKEKGITPNICTYN 637

Query: 400 AFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSA 458
             ++      + + A  +  +M QK + P+I ++ LL   F             S     
Sbjct: 638 NMISCLCEGGRIKDATSLLDEMLQKGISPNISSFRLLIKAFCKA----------SDFGVV 687

Query: 459 KRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHS 518
           K +  I + +  +  +  +  M N L   G     +EL     D    LG   YN ++  
Sbjct: 688 KEVFEIALSICGHK-EALYSLMFNELLIGGEVSEAKELFDAALDRCFDLGNFQYNDLIEK 746

Query: 519 LVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID 552
           L + +    A +I  +M   G   + A++  +ID
Sbjct: 747 LCKDEMLENASDILHKMIDKGYRFDPASFMPVID 780


>gi|9502386|gb|AAF88093.1|AC025417_21 T12C24.22 [Arabidopsis thaliana]
          Length = 1245

 Score = 82.8 bits (203), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 76/385 (19%), Positives = 167/385 (43%), Gaps = 47/385 (12%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           ++ + +I+   R   +  A  ++ ++  LG +P + T++  I+ +  +  +   + ++  
Sbjct: 114 YTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDR 173

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPER 413
           M +N  +P   T  ++     ++ +  LA  LL ++                      ER
Sbjct: 174 MVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKME---------------------ER 212

Query: 414 AIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNI 473
            +K           D+ TY  +      +++   +G + + +   K       +M    I
Sbjct: 213 NVK----------ADVFTYSTI------IDSLCRDGCIDAAISLFK-------EMETKGI 249

Query: 474 QHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAME 530
           + S ++  +L++ L   G   +   L++     +      T+N +L   V+  +   A E
Sbjct: 250 KSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANE 309

Query: 531 IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590
           ++K+M T GI PN  TYN ++D   +      A+ ++ +MVR+   P  +T+T+LIK   
Sbjct: 310 LYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYC 369

Query: 591 DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650
                D+ + +   +S  G+  + + Y+ +++  C+ G+I + E + ++M  + V PD  
Sbjct: 370 MVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVM 429

Query: 651 TCHFVFSGYVNCGFHNSAMEALQVL 675
           T   +  G  + G    A+E  + L
Sbjct: 430 TYGILLDGLCDNGKLEKALEIFEDL 454



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 59/269 (21%), Positives = 110/269 (40%), Gaps = 16/269 (5%)

Query: 421 MRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISM 480
           M+    PD  T+  L      +   + EG +   V    R       M  N  Q   ++ 
Sbjct: 140 MKLGYEPDTTTFNTL------IKGLFLEGKVSEAVVLVDR-------MVENGCQPDVVTY 186

Query: 481 KNLLKAL---GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKT 537
            +++  +   G   +  +L++   +        TY+T++ SL        A+ +FK+M+T
Sbjct: 187 NSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMET 246

Query: 538 CGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDE 597
            GI  +  TYN ++        +   + L+  MV     P  +T+  L+ + +  G   E
Sbjct: 247 KGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQE 306

Query: 598 ALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFS 657
           A  L   +   GI  +++ YNT++   C + R+     +++ M +NK  PD  T   +  
Sbjct: 307 ANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIK 366

Query: 658 GYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           GY      +  M+  + +S R L     T
Sbjct: 367 GYCMVKRVDDGMKVFRNISKRGLVANAVT 395



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 78/373 (20%), Positives = 147/373 (39%), Gaps = 49/373 (13%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ +++   R+ ++ LA  L+ +M+   ++    TY   I ++  D  +   + + K M
Sbjct: 185 TYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEM 244

Query: 355 QQNNLKPQDSTIATLSVECSKALEL-DLAEALLDQISRCTNPK--PFSAFLAACDTMDKP 411
           +   +K    T  +L     KA +  D A  L D +SR   P    F+  L       K 
Sbjct: 245 ETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKL 304

Query: 412 ERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           + A +++ +M  + + P+I TY  L   +   N   E  NM                M R
Sbjct: 305 QEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDL-------------MVR 351

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAME 530
           N      ++  +L+K              +C                     +     M+
Sbjct: 352 NKCSPDIVTFTSLIKG-------------YC-------------------MVKRVDDGMK 379

Query: 531 IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590
           +F+ +   G+  NA TY+I++         K A  L   MV  G  P  MTY  L+  L 
Sbjct: 380 VFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLC 439

Query: 591 DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650
           D G  ++AL + + +    +   +++Y TI++  C+ G+++    +   +    V+P+  
Sbjct: 440 DNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVM 499

Query: 651 TCHFVFSGYVNCG 663
           T   + SG    G
Sbjct: 500 TYTVMISGLCKKG 512



 Score = 66.6 bits (161), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 78/349 (22%), Positives = 134/349 (38%), Gaps = 29/349 (8%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           +++S +I +  R      A  L  +M++ G++ S  TY+  +R +       +G  +LK 
Sbjct: 219 FTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKD 278

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPK--PFSAFLAACDTMDK 410
           M    + P   T   L     K  +L  A  L  + I+R  +P    ++  +      ++
Sbjct: 279 MVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNR 338

Query: 411 PERAIKIFAKM-RQKLRPDIRTYELLFS-------------LFGNVNAPYEEGNM----- 451
              A  +   M R K  PDI T+  L               +F N++      N      
Sbjct: 339 LSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSI 398

Query: 452 ----FSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCD---SK 504
               F Q    K    +  +M  + +    ++   LL  L   G + + ++ F D   SK
Sbjct: 399 LVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSK 458

Query: 505 TPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSAS 564
             LG   Y T++  + +  +   A  +F  +   G+ PN  TY +MI           A+
Sbjct: 459 MDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEAN 518

Query: 565 ALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHD 613
            L+  M  DG  P   TY  LI+  L  GD   +  L++ +   G   D
Sbjct: 519 ILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSAD 567



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/258 (22%), Positives = 102/258 (39%), Gaps = 8/258 (3%)

Query: 436 FSLFGNVNAPYEEGNMFSQVDSAKRINAIEM--DMARNNIQHSHISMKNLLKALGAEGMI 493
           FS   N N  + E  + S +   K+ +AI +  +M R+    S +       A+      
Sbjct: 36  FSSISNGNVCFRE-RLRSGIVDIKKDDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQF 94

Query: 494 RELIQYFCDSKTPLGTP----TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNI 549
             L+  FC      G      T N +++      ++  A  +  ++   G  P+  T+N 
Sbjct: 95  -NLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNT 153

Query: 550 MIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEG 609
           +I    +      A  LV  MV +G  P  +TY +++  +   GD   AL+LL  +    
Sbjct: 154 LIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERN 213

Query: 610 IPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAM 669
           +  DV  Y+TI+   C  G ID    + ++M    ++    T + +  G    G  N   
Sbjct: 214 VKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGA 273

Query: 670 EALQVLSMRMLCEEVSTL 687
             L+ +  R +   V T 
Sbjct: 274 LLLKDMVSREIVPNVITF 291



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 64/286 (22%), Positives = 120/286 (41%), Gaps = 28/286 (9%)

Query: 90  FFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLG 149
           +  I+N   RS D    ++  R MEE+ +  +   Y  ++ +LC+ G ++ A +L   + 
Sbjct: 186 YNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEM- 244

Query: 150 ERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNL 209
           E  GI   +  YNS +    K        L L  M SR +  N +T+  LL + V +  L
Sbjct: 245 ETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKL 304

Query: 210 SAVHEIWEDYI-KHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMV-----------ALA 257
              +E++++ I +  S +I +    +  +     L  A   L  MV              
Sbjct: 305 QEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSL 364

Query: 258 MMGKLYINRTSEG----RLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAE 313
           + G   + R  +G    R  S R    +  NA+        ++S ++    ++    LAE
Sbjct: 365 IKGYCMVKRVDDGMKVFRNISKR---GLVANAV--------TYSILVQGFCQSGKIKLAE 413

Query: 314 QLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNL 359
           +L  +M S G+ P   TY   +  +  +  L   +E+ + +Q++ +
Sbjct: 414 ELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKM 459



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 106/503 (21%), Positives = 190/503 (37%), Gaps = 58/503 (11%)

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
           M  +EI  N   + +++    K G L+EA+ L   +  R GI P +  YN+ +      +
Sbjct: 279 MVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITR-GISPNIITYNTLMDGYCMQN 337

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLS-IFSLR 231
            +  AN  LDLM       + VT+T L+K     K +    +++ +  K   ++   +  
Sbjct: 338 RLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYS 397

Query: 232 KFVWSFTRLRDLKSAYETLQHMVALAMM------GKLYINRTSEGRL----------RSS 275
             V  F +   +K A E  Q MV+  ++      G L       G+L          + S
Sbjct: 398 ILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKS 457

Query: 276 RLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFI 335
           ++D+ I +            ++ +I    +      A  L   +   G++P+  TY   I
Sbjct: 458 KMDLGIVM------------YTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMI 505

Query: 336 RAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNP 395
             +     L     +L+ M+++   P D T  TL     +  +L  +  L++++  C   
Sbjct: 506 SGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFS 565

Query: 396 KPFSAFLAACDTMDKPERAIKI------FAKMRQKL-----RPDIRTYELLFSLFGNVNA 444
              S+     D +    + + +       +K RQ L        IR   L F      N 
Sbjct: 566 ADASSIKMVIDMLLSAMKRLTLRYCLSKGSKSRQDLLELSGSEKIRLSSLTFVKMFPCNT 625

Query: 445 PYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMK----NLLKALGAEGMIRELIQYF 500
                N+      A+ +N+ E++     ++ S +  K    ++   +  E +   L    
Sbjct: 626 ITTSLNV--NTIEARGMNSAELNRDLRKLRRSSVLKKFKNRDVRVLVTNELLTWGLEDAE 683

Query: 501 CDSKTPLGTPTYNTVLHSLVEAQESHR---------AMEIFKQMKTCGIPPNAATYNIMI 551
           CD    L  PT    +H    A    R         A E+ K+M   GI PN  TY+ +I
Sbjct: 684 CDLMVDLELPT--DAVHYAHRAGRMRRPGRKMTVVTAEELHKEMIQRGIAPNTITYSSLI 741

Query: 552 DCCSIIRCFKSASALVSMMVRDG 574
           D          A+ ++ +MV  G
Sbjct: 742 DGFCKENRLDEANQMLDLMVTKG 764



 Score = 46.2 bits (108), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 28/112 (25%), Positives = 57/112 (50%), Gaps = 1/112 (0%)

Query: 107 METWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLG 166
           +E +  +++ ++ L    Y  +++ +CKGG +E+A NL   L  + G+ P +  Y   + 
Sbjct: 448 LEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCK-GVKPNVMTYTVMIS 506

Query: 167 ACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWED 218
              K  S+  AN+ L  M+      N+ TY  L++  +   +L+A  ++ E+
Sbjct: 507 GLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEE 558


>gi|302806475|ref|XP_002984987.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
 gi|300147197|gb|EFJ13862.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
          Length = 471

 Score = 82.8 bits (203), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 84/367 (22%), Positives = 158/367 (43%), Gaps = 56/367 (15%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
            +F+ ++    +  N   A +L+  M + G++P+  TY   I  +   +      EVL+ 
Sbjct: 128 MTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEE 187

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI--SRCT-NPKPFSAFLAACDTMDK 410
           M+ + + P   T + L     KA +++ AE +L ++  S CT +   +S+ + A     K
Sbjct: 188 MKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGK 247

Query: 411 PERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAI-EMDM 468
              A K   +MR Q+  PD+ TY  +                   +D   ++  I E  +
Sbjct: 248 LLEAQKTLQEMRKQRKSPDVVTYNTV-------------------IDGLCKLGKIAEAQV 288

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRA 528
             + +Q S   + +++                          TY+TV++ L ++     A
Sbjct: 289 ILDQMQESGDVLPDVV--------------------------TYSTVINGLCKSDMLVEA 322

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRC--FKSASALVSMMVRDGFYPQTMTYTALI 586
            ++  +M   G  P+  TY  +ID   + +C   + A  L+  M R G  P  +TYT LI
Sbjct: 323 QKLLDRMCKAGCNPDVVTYTTIID--GLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLI 380

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
             L      DEA  +++ +   G P +++ YNT++   C  GRI   + ++++M   + +
Sbjct: 381 SGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAE 440

Query: 647 --PDPST 651
             PD +T
Sbjct: 441 CSPDAAT 447



 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 78/148 (52%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TY  ++ +   A++   AM++ ++M+  G PPN  TYN+++D    +    +A  +V  M
Sbjct: 59  TYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKM 118

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           +  GF P  MT+ +L+      G+ D+A  LL ++  +G+  +V+ Y+ ++   C+  + 
Sbjct: 119 IEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKF 178

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
              + ++E+M  + V PD  T   +  G
Sbjct: 179 LEAKEVLEEMKASGVTPDAFTYSALIHG 206



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 85/368 (23%), Positives = 154/368 (41%), Gaps = 39/368 (10%)

Query: 308 NSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIA 367
           N+G  +  M  ++S+G  P+  TY   I A    + L   M++L+ M++    P    + 
Sbjct: 37  NAGDLDGAMDHLRSMGCDPNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPN---LV 93

Query: 368 TLSVECSKALELDLAEALLDQISR------CTNPKPFSAFLAACDTMDKPERAIKIFAKM 421
           T +V      +L +  A  D + +        N   F++ +         + A K+   M
Sbjct: 94  TYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIM 153

Query: 422 RQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM--DMARNNIQHSHI 478
             K +RP++ TY  L            +G   SQ    K + A E+  +M  + +     
Sbjct: 154 VAKGMRPNVVTYSALI-----------DGLCKSQ----KFLEAKEVLEEMKASGVTPDAF 198

Query: 479 SMKNLLKAL-------GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEI 531
           +   L+  L        AE M+R +    C   TP     Y++++H+  ++ +   A + 
Sbjct: 199 TYSALIHGLCKADKIEEAEQMLRRMAGSGC---TP-DVVVYSSIIHAFCKSGKLLEAQKT 254

Query: 532 FKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDG-FYPQTMTYTALIKILL 590
            ++M+     P+  TYN +ID    +     A  ++  M   G   P  +TY+ +I  L 
Sbjct: 255 LQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQESGDVLPDVVTYSTVINGLC 314

Query: 591 DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650
                 EA  LLD +   G   DV+ Y TI+   C+ GR++  E++++ M +    P+  
Sbjct: 315 KSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVV 374

Query: 651 TCHFVFSG 658
           T   + SG
Sbjct: 375 TYTTLISG 382



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 97/469 (20%), Positives = 178/469 (37%), Gaps = 69/469 (14%)

Query: 153 GIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAV 212
           G  P +  Y + + A A+   +  A   L+ M  R    N VTY  L+        + A 
Sbjct: 52  GCDPNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAA 111

Query: 213 HEIWEDYIKH-YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYI-NRTSEG 270
            ++ +  I+  ++ ++ +    V  F +  ++  A + L  MVA  M   +   +   +G
Sbjct: 112 QDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDG 171

Query: 271 RLRSSRLDIPIPLNALPVMKVLR--------WSFSDVIHACGRTQNSGLAEQLMLQMQSL 322
             +S +      L A  V++ ++        +++S +IH   +      AEQ++ +M   
Sbjct: 172 LCKSQKF-----LEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGS 226

Query: 323 GLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLA 382
           G  P    Y   I A      L    + L+ M++    P   T  T+     K  ++  A
Sbjct: 227 GCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEA 286

Query: 383 EALLDQISRCTNPKP----FSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFS 437
           + +LDQ+    +  P    +S  +      D    A K+  +M +    PD+ TY  +  
Sbjct: 287 QVILDQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTI-- 344

Query: 438 LFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELI 497
                            +D   +   +E               + LL+ +   G    ++
Sbjct: 345 -----------------IDGLCKCGRLE-------------EAEYLLQGMKRAGCAPNVV 374

Query: 498 QYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSII 557
                        TY T++  L +A++   A  + ++M+  G PPN  TYN M++   + 
Sbjct: 375 -------------TYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVS 421

Query: 558 RCFKSASALVSMMVRDG---FYPQTMTYTALIKILLDYGDFDEALNLLD 603
              K A  LV  M +DG     P   TY  ++  L+      EA  LL+
Sbjct: 422 GRIKEAQQLVQRM-KDGRAECSPDAATYRTIVNALMSSDLVQEAEQLLE 469



 Score = 66.2 bits (160), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 79/179 (44%)

Query: 495 ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCC 554
           +L++   +   P    TYN ++ +L +      A ++ K+M   G  PN  T+N ++D  
Sbjct: 78  KLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGF 137

Query: 555 SIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDV 614
                   A  L+ +MV  G  P  +TY+ALI  L     F EA  +L+ +   G+  D 
Sbjct: 138 CKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKASGVTPDA 197

Query: 615 LLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
             Y+ ++   C+  +I+  E ++ +M  +   PD      +   +   G    A + LQ
Sbjct: 198 FTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQ 256



 Score = 58.9 bits (141), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 76/157 (48%), Gaps = 9/157 (5%)

Query: 522 AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM--VRD-GFYPQ 578
           A + H A+E+ ++MK+ G  P+A T+        II    +A  L   M  +R  G  P 
Sbjct: 3   AGDLHAALELLEEMKSAGFAPDAFTHT------PIITAMANAGDLDGAMDHLRSMGCDPN 56

Query: 579 TMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIE 638
            +TYTALI         +EA+ LL+ +   G P +++ YN ++   C+   +   + +++
Sbjct: 57  VVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVK 116

Query: 639 QMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
           +M +    P+  T + +  G+   G  + A + L ++
Sbjct: 117 KMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIM 153


>gi|242067353|ref|XP_002448953.1| hypothetical protein SORBIDRAFT_05g002330 [Sorghum bicolor]
 gi|241934796|gb|EES07941.1| hypothetical protein SORBIDRAFT_05g002330 [Sorghum bicolor]
          Length = 734

 Score = 82.8 bits (203), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 80/365 (21%), Positives = 142/365 (38%), Gaps = 49/365 (13%)

Query: 323 GLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLA 382
           GL P  H ++ F  A      +   M++   M+Q+ L P       L     K   +D A
Sbjct: 304 GLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDA 363

Query: 383 EALLDQ-ISRCTNPK--PFSAFLAACDTMDKPERAIKIFAKMRQK--------------- 424
           E   +Q I+    P    F++ +    T+DK ERA ++  +M  +               
Sbjct: 364 EVKFNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICN 423

Query: 425 ---------------------LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINA 463
                                +RPD  +Y  L S +       E   +F   D    I  
Sbjct: 424 LCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLAGRTDEAEKVF---DGMVSIGL 480

Query: 464 IEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQ 523
              ++  N + H + S   +  A     + RE+++      TP G  TYNT+LH L + +
Sbjct: 481 SPTEVTYNTLLHGYCSASRIDDAYC---LFREMLR---KGVTP-GVVTYNTILHGLFQTK 533

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
               A E++  M   G   +  TYNI+++      C   A  +   +   G     +T+T
Sbjct: 534 RFSEAKELYLNMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFT 593

Query: 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
            +I  LL  G  ++A++L   +   G+  +V+ Y  + +   E+G ++  + +   M +N
Sbjct: 594 IMIGALLKGGRKEDAMDLFAAIPANGLVPNVVTYRLVAENLIEEGSLEEFDSLFSAMEKN 653

Query: 644 KVQPD 648
              P+
Sbjct: 654 GTAPN 658



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 82/195 (42%), Gaps = 42/195 (21%)

Query: 528 AMEIFKQM-KTCGI--PPNAATYNIMIDC------------------------------- 553
            + +F +M + C I   PN  TY+I+I C                               
Sbjct: 79  VVSLFNRMVRECSIKVAPNTCTYSILIGCLCRMGRLKHSFATFGLILKTGWRVNDIVINQ 138

Query: 554 -----CSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLE 608
                C   R  ++   L+  M   G  P T++Y+ L+K   +    +EAL LL +++ +
Sbjct: 139 LLKGLCDGKRVGEAMDVLLQRMPELGCTPDTVSYSILLKGFCNENRAEEALELLRMMAND 198

Query: 609 ---GIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFH 665
                P +V+ Y T++   C+    D  E + +QM  N V+P+  T + +  GY++ G  
Sbjct: 199 HGRSCPPNVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGVKPNNDTYNCLIHGYLSIGKW 258

Query: 666 NSAMEALQVLSMRML 680
              ++ L+ +S R L
Sbjct: 259 KEVVQMLEKMSARGL 273


>gi|358347566|ref|XP_003637827.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503762|gb|AES84965.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 639

 Score = 82.8 bits (203), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 80/397 (20%), Positives = 171/397 (43%), Gaps = 25/397 (6%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           ++F+ +I+          A  ++ ++  LG QP + T +  +R +  +  ++  +     
Sbjct: 89  FTFNILINCFSHLCQLNFAFSMVAKILKLGYQPDTVTVNTLLRGLCLNGKVKEALNFHDH 148

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP-FSAFLAACDTMDKPE 412
           + +        +  TL     K+ E   A  LL +I      +P    + A  D+  K +
Sbjct: 149 VIRKRFHLDQVSYGTLINGLCKSGETRAALQLLRKIEGLLLVRPDVIMYTAIIDSFCKDK 208

Query: 413 RAIK---IFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
             I    ++++M  +K+ P++ T+  L  ++G           F  V   K    +  +M
Sbjct: 209 LVIDAYDLYSEMIVKKIYPNVVTFNSL--IYG-----------FCIVGQLKEAVGLLNEM 255

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQES 525
           + NN+  +  +   L+  L  EG +++   ++             TY +++      +E 
Sbjct: 256 SLNNVNPNVYTFNILIDGLCKEGEVKKATSVLSVMIKQGVEPNVVTYTSLMDGYFLVKEV 315

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
           ++A  +F  +   G+ PN  +Y++MI+     +    A  L   M      P T+TY++L
Sbjct: 316 NKAKHVFNTISLRGVTPNVHSYSVMINGLCKNKMVDEAVKLFKEMHLKNMTPNTVTYSSL 375

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           I  L   G   +  +L+D ++  G P +++ YN++L   C+  ++D    ++ +M    +
Sbjct: 376 IDGLCKSGRISDVWDLIDEINNRGQPANIITYNSLLNGLCKNHQVDKAIALLTKMKDEGI 435

Query: 646 QPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCE 682
           QPD ST    ++  V+    N  ++  Q +   +LC+
Sbjct: 436 QPDMST----YTTLVDGLCKNGRLKDAQRIYQDLLCK 468



 Score = 75.9 bits (185), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 87/395 (22%), Positives = 170/395 (43%), Gaps = 27/395 (6%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGL-QPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           S+  +I+   ++  +  A QL+ +++ L L +P    Y   I +   D+ + +  ++   
Sbjct: 160 SYGTLINGLCKSGETRAALQLLRKIEGLLLVRPDVIMYTAIIDSFCKDKLVIDAYDLYSE 219

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQIS-RCTNPKPFSAFLAACDTMDKP- 411
           M    + P   T  +L        +L  A  LL+++S    NP  ++ F    D + K  
Sbjct: 220 MIVKKIYPNVVTFNSLIYGFCIVGQLKEAVGLLNEMSLNNVNPNVYT-FNILIDGLCKEG 278

Query: 412 --ERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI-NAIEMD 467
             ++A  + + M +Q + P++ TY  L   +           +  +V+ AK + N I + 
Sbjct: 279 EVKKATSVLSVMIKQGVEPNVVTYTSLMDGYF----------LVKEVNKAKHVFNTISLR 328

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCD----SKTPLGTPTYNTVLHSLVEAQ 523
               N+ HS+  M N    L    M+ E ++ F +    + TP  T TY++++  L ++ 
Sbjct: 329 GVTPNV-HSYSVMIN---GLCKNKMVDEAVKLFKEMHLKNMTP-NTVTYSSLIDGLCKSG 383

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
                 ++  ++   G P N  TYN +++          A AL++ M  +G  P   TYT
Sbjct: 384 RISDVWDLIDEINNRGQPANIITYNSLLNGLCKNHQVDKAIALLTKMKDEGIQPDMSTYT 443

Query: 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
            L+  L   G   +A  +   +  +G P ++ +Y  ++   C++G  D    ++ QM  N
Sbjct: 444 TLVDGLCKNGRLKDAQRIYQDLLCKGYPLNIRMYTVMINGLCKEGFFDEALSLLSQMEDN 503

Query: 644 KVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678
              PD  T   + S       +  A++ L+ +  R
Sbjct: 504 GCMPDAVTYETLISALFKNNKNGKAVKLLREMIAR 538



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 62/117 (52%)

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           +N +L SLV+      A+   +QM+  GI P   T+NI+I+C S +     A ++V+ ++
Sbjct: 56  FNKILSSLVKMNHFKIAISFSQQMELKGIQPEMFTFNILINCFSHLCQLNFAFSMVAKIL 115

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
           + G+ P T+T   L++ L   G   EALN  D V  +    D + Y T++   C+ G
Sbjct: 116 KLGYQPDTVTVNTLLRGLCLNGKVKEALNFHDHVIRKRFHLDQVSYGTLINGLCKSG 172


>gi|20219038|gb|AAM15782.1|AC104428_3 Putative indole-3-acetate beta-glucosyltransferase [Oryza sativa
           Japonica Group]
 gi|108706351|gb|ABF94146.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
 gi|125585039|gb|EAZ25703.1| hypothetical protein OsJ_09536 [Oryza sativa Japonica Group]
          Length = 648

 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 129/589 (21%), Positives = 221/589 (37%), Gaps = 101/589 (17%)

Query: 99  RSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPIL 158
           R+  P    + +R++      +N     +M+   CK    ++   +I  + E+  ++P +
Sbjct: 133 RAGWPHLAADAYRLVFSSNSEVNTYTLNIMVHNYCKALEFDKVDAVISEM-EKRCVFPDV 191

Query: 159 PVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLK----LAVWQKNLSAVHE 214
             +N  + A  +      A   +D M S+ +    VTY  +LK      +W K      E
Sbjct: 192 VTHNVMVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKE 251

Query: 215 IWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRS 274
           + +D+     +  F++   +  F R+ +++ A +  + M                 R R 
Sbjct: 252 M-DDFGVAPDVRSFTI--LIGGFCRVGEIEEALKIYKEM-----------------RHRG 291

Query: 275 SRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTY--- 331
            + D+               SFS +I    R      A   + +M+  GL P    Y   
Sbjct: 292 IKPDL--------------VSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMV 337

Query: 332 -DGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQIS 390
             GF RA +    LR    V   M      P   T  TL     K   L  AE LL+++ 
Sbjct: 338 IGGFCRAGLMSDALR----VRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMR 393

Query: 391 RCTNPK---PFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPY 446
               P     F+  +       K ++A+++F  M  Q+LRPDI TY  L      ++   
Sbjct: 394 ERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTL------IDGMC 447

Query: 447 EEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTP 506
            +G++        + N +  DM    I  +H+                            
Sbjct: 448 RQGDL-------DKANDLWDDMHSREIFPNHV---------------------------- 472

Query: 507 LGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC-CSIIRCFKSASA 565
               TY+ ++ S  E  +   A     +M   GI PN  TYN +I   C      K    
Sbjct: 473 ----TYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKF 528

Query: 566 LVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKAC 625
           L  MMV +   P  +TY  LI   +      +A  LL+++  E +  DV+ YN ++    
Sbjct: 529 LQKMMV-NKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFS 587

Query: 626 EKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQV 674
             G +    +I E+M    ++PD  T   + +G+V  G   ++ EA Q+
Sbjct: 588 VHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAG---NSKEAFQL 633



 Score = 82.4 bits (202), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 87/421 (20%), Positives = 162/421 (38%), Gaps = 75/421 (17%)

Query: 293 RWSFSDVI------HACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRN 346
           R  F DV+       A  R  ++  A  L+  M S GL+P   TY+  ++ +        
Sbjct: 185 RCVFPDVVTHNVMVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDK 244

Query: 347 GMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACD 406
             EV K M    + P                                + + F+  +    
Sbjct: 245 AWEVFKEMDDFGVAP--------------------------------DVRSFTILIGGFC 272

Query: 407 TMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFG------NVNAPYEEGNMFSQVDSAK 459
            + + E A+KI+ +MR + ++PD+ ++  L  LF       +  A   E   F  V    
Sbjct: 273 RVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGV 332

Query: 460 RINAIEMDMARNNIQHSHISMKNLLKALG-----------------------AEGMIREL 496
               +     R  +    + +++ +   G                       AEG++ E+
Sbjct: 333 IYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEM 392

Query: 497 IQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSI 556
            +       P    T+ T++H      +  +A+++F  M    + P+  TYN +ID    
Sbjct: 393 RE----RGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCR 448

Query: 557 IRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLL 616
                 A+ L   M     +P  +TY+ LI    + G  ++A   LD +  +GI  +++ 
Sbjct: 449 QGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMT 508

Query: 617 YNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
           YN+I+K  C  G +   +  +++M  NKV PD  T + +  GY+     +   +A ++L+
Sbjct: 509 YNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIK---EDKMHDAFKLLN 565

Query: 677 M 677
           M
Sbjct: 566 M 566



 Score = 63.2 bits (152), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 58/263 (22%), Positives = 113/263 (42%), Gaps = 16/263 (6%)

Query: 427 PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKA 486
           PD+ T+ ++      V+A +  G+       A+   A+   M    ++   ++  ++LK 
Sbjct: 189 PDVVTHNVM------VDARFRAGD-------AEAAMALVDSMVSKGLKPGIVTYNSVLKG 235

Query: 487 LGAEGMIR---ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPN 543
           L   GM     E+ +   D        ++  ++       E   A++I+K+M+  GI P+
Sbjct: 236 LCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPD 295

Query: 544 AATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLD 603
             +++ +I   +       A A +  M   G  P  + YT +I      G   +AL + D
Sbjct: 296 LVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRD 355

Query: 604 LVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
            +   G   DV+ YNT+L   C++ R+   E ++ +M +  V PD  T   +  GY   G
Sbjct: 356 EMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEG 415

Query: 664 FHNSAMEALQVLSMRMLCEEVST 686
             + A++    +  + L  ++ T
Sbjct: 416 KLDKALQLFDTMLNQRLRPDIVT 438



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/185 (22%), Positives = 83/185 (44%), Gaps = 2/185 (1%)

Query: 495 ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI-DC 553
           E  +   D + P+     N +L +L  A   H A + ++ + +     N  T NIM+ + 
Sbjct: 107 EAFRLILDHRVPIPAAASNALLAALSRAGWPHLAADAYRLVFSSNSEVNTYTLNIMVHNY 166

Query: 554 CSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHD 613
           C  +  F    A++S M +   +P  +T+  ++      GD + A+ L+D +  +G+   
Sbjct: 167 CKALE-FDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALVDSMVSKGLKPG 225

Query: 614 VLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           ++ YN++LK  C  G  D    + ++M    V PD  +   +  G+   G    A++  +
Sbjct: 226 IVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYK 285

Query: 674 VLSMR 678
            +  R
Sbjct: 286 EMRHR 290


>gi|224127568|ref|XP_002329310.1| predicted protein [Populus trichocarpa]
 gi|222870764|gb|EEF07895.1| predicted protein [Populus trichocarpa]
          Length = 593

 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 84/163 (51%), Gaps = 6/163 (3%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TYNT++    +    + A+ +  +M+  GI P+  TYN +I       C +        +
Sbjct: 243 TYNTLISLYCKKGMHYEALSVQDRMEMAGISPDIFTYNSLI----YGFCREGRMREAVQL 298

Query: 571 VRD--GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
            RD     P  +TYT+LI       D DEAL L +++S +G+   V+ YN+IL+K CE G
Sbjct: 299 FRDIKDVTPNHVTYTSLIDGYCRVNDLDEALRLKEVMSEKGLYPTVITYNSILRKLCEGG 358

Query: 629 RIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEA 671
           R+     ++ +M + K++PD  TC+ + + Y   G   SA++ 
Sbjct: 359 RLRDANILLNEMSERKIEPDNVTCNTLINAYCKIGDMRSALKV 401



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 95/215 (44%), Gaps = 6/215 (2%)

Query: 475 HSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYN---TVLHSLVEAQESHRAMEI 531
           +SH+ +  L+   G   M  E IQ F   +     P  +    +L+SL + + +    +I
Sbjct: 135 NSHV-LSWLVIVYGNSKMTHEAIQVFEHMRVNGFRPHLHACTVLLNSLAKDRLTDTVWKI 193

Query: 532 FKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLD 591
           +K+M   G+  N   YN+++  C      + A  ++S M     +P   TY  LI +   
Sbjct: 194 YKKMVKLGVVANIHVYNVLLHACCKSGDVEKAEKVLSEMELKCVFPDLFTYNTLISLYCK 253

Query: 592 YGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
            G   EAL++ D + + GI  D+  YN+++   C +GR+     +   +    V P+  T
Sbjct: 254 KGMHYEALSVQDRMEMAGISPDIFTYNSLIYGFCREGRMREAVQLFRDIKD--VTPNHVT 311

Query: 652 CHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
              +  GY      + A+   +V+S + L   V T
Sbjct: 312 YTSLIDGYCRVNDLDEALRLKEVMSEKGLYPTVIT 346



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 80/392 (20%), Positives = 162/392 (41%), Gaps = 29/392 (7%)

Query: 295 SFSDVIHACGRTQNSGLAEQLM-------LQMQSLGLQPSSHTYDGFIRAIVSDRGLRNG 347
            F   +HAC    NS   ++L         +M  LG+  + H Y+  + A      +   
Sbjct: 166 GFRPHLHACTVLLNSLAKDRLTDTVWKIYKKMVKLGVVANIHVYNVLLHACCKSGDVEKA 225

Query: 348 MEVLKIMQQNNLKPQDSTIATL-SVECSKALELDLAEALLDQISRC-TNPKPFS--AFLA 403
            +VL  M+   + P   T  TL S+ C K +  + A ++ D++     +P  F+  + + 
Sbjct: 226 EKVLSEMELKCVFPDLFTYNTLISLYCKKGMHYE-ALSVQDRMEMAGISPDIFTYNSLIY 284

Query: 404 ACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINA 463
                 +   A+++F  ++  + P+  TY  L   +  VN           +D A R+  
Sbjct: 285 GFCREGRMREAVQLFRDIKD-VTPNHVTYTSLIDGYCRVN----------DLDEALRLKE 333

Query: 464 IEMDMARNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLV 520
           +   M+   +  + I+  ++L+ L   G +R+   L+    + K      T NT++++  
Sbjct: 334 V---MSEKGLYPTVITYNSILRKLCEGGRLRDANILLNEMSERKIEPDNVTCNTLINAYC 390

Query: 521 EAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTM 580
           +  +   A+++  +M   G+  +  TY  +I      +    A  L+  M+  GF P   
Sbjct: 391 KIGDMRSALKVKDKMVGAGLKLDQFTYKALIHGFCKAKEIDKAKELLFGMMDAGFSPSYC 450

Query: 581 TYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQM 640
           TY+ L+       + +  + L D +   G+  DV +Y  ++++ C+  +ID  + ++  M
Sbjct: 451 TYSWLVDSYCKQQNEEAVIKLPDELVRRGLCVDVSVYRALIRRFCKIEKIDCAQRVLGLM 510

Query: 641 HQNKVQPDPSTCHFVFSGYVNCGFHNSAMEAL 672
               +  D      +  GY   G  N   + L
Sbjct: 511 KDKGIFGDSVVYTSLAYGYWKVGKVNVTSDIL 542


>gi|168033824|ref|XP_001769414.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162679334|gb|EDQ65783.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 410

 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 87/377 (23%), Positives = 143/377 (37%), Gaps = 48/377 (12%)

Query: 299 VIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNN 358
           +I   GR    GLA ++   M   G+ PS H Y   +        L+    + + M++  
Sbjct: 36  IISILGREGKLGLAREIFEGMSKAGVAPSVHAYTALLSGYAKQGLLKEAWALFEAMKEKG 95

Query: 359 LKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIF 418
             P   T  TL   C+K      A  L D +                           +F
Sbjct: 96  CSPNVLTYNTLINACTKR-----AYRLPDLVG--------------------------LF 124

Query: 419 AKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSH 477
            +M+Q  ++P+  TY  +      VNA        S  D+A +I     +M   N   + 
Sbjct: 125 EEMKQAGVQPNDITYNCM------VNACV----CLSLFDTASQILK---EMKAVNCLPNV 171

Query: 478 ISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQ 534
           IS   ++ +LG  G + E ++ F + K    +P   TYN++L +        +AM +F  
Sbjct: 172 ISYTTMINSLGRSGRLDEAVELFEEMKELGRSPNSWTYNSLLKAYAREGRYEKAMCLFVG 231

Query: 535 MKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGD 594
           M+  G  P+  TYN +ID C     F  A  +   M R G  P  +TY  ++     +  
Sbjct: 232 MEDEGCIPDLYTYNTVIDMCGRGGLFAEAEGVFLEMQRKGCTPDRVTYNTMLDAYSKWSR 291

Query: 595 FDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHF 654
              A +LL  +   G   D+  YN +L  A + G       I  ++      P+  +   
Sbjct: 292 RGRARDLLKTMKRAGCTPDLWTYNILLDAAGKAGSASEAMQIFHELKAAGHSPNLVSFSA 351

Query: 655 VFSGYVNCGFHNSAMEA 671
           + + Y   G+   A  A
Sbjct: 352 LINMYGRLGYFEEAERA 368



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 63/288 (21%), Positives = 121/288 (42%), Gaps = 20/288 (6%)

Query: 315 LMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECS 374
           L  +M+  G+QP+  TY+  + A V         ++LK M+  N  P   +  T+     
Sbjct: 123 LFEEMKQAGVQPNDITYNCMVNACVCLSLFDTASQILKEMKAVNCLPNVISYTTMINSLG 182

Query: 375 KALELDLAEALLDQ---ISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMR-QKLRPDIR 430
           ++  LD A  L ++   + R  N   +++ L A     + E+A+ +F  M  +   PD+ 
Sbjct: 183 RSGRLDEAVELFEEMKELGRSPNSWTYNSLLKAYAREGRYEKAMCLFVGMEDEGCIPDLY 242

Query: 431 TYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGA- 489
           TY  +  + G        G +F++ +       + ++M R       ++   +L A    
Sbjct: 243 TYNTVIDMCG-------RGGLFAEAE------GVFLEMQRKGCTPDRVTYNTMLDAYSKW 289

Query: 490 --EGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATY 547
              G  R+L++    +       TYN +L +  +A  +  AM+IF ++K  G  PN  ++
Sbjct: 290 SRRGRARDLLKTMKRAGCTPDLWTYNILLDAAGKAGSASEAMQIFHELKAAGHSPNLVSF 349

Query: 548 NIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDF 595
           + +I+    +  F+ A      M   G  P    Y  L+     +G +
Sbjct: 350 SALINMYGRLGYFEEAERAWVEMRATGCVPNATAYCGLMNSYSHHGMY 397



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/247 (21%), Positives = 99/247 (40%), Gaps = 39/247 (15%)

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVE-AQ 523
           M++  +  S  +   LL     +G+++E    F   K    +P   TYNT++++  + A 
Sbjct: 56  MSKAGVAPSVHAYTALLSGYAKQGLLKEAWALFEAMKEKGCSPNVLTYNTLINACTKRAY 115

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALV---------------S 568
                + +F++MK  G+ PN  TYN M++ C  +  F +AS ++               +
Sbjct: 116 RLPDLVGLFEEMKQAGVQPNDITYNCMVNACVCLSLFDTASQILKEMKAVNCLPNVISYT 175

Query: 569 MMVRD--------------------GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLE 608
            M+                      G  P + TY +L+K     G +++A+ L   +  E
Sbjct: 176 TMINSLGRSGRLDEAVELFEEMKELGRSPNSWTYNSLLKAYAREGRYEKAMCLFVGMEDE 235

Query: 609 GIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSA 668
           G   D+  YNT++      G     E +  +M +    PD  T + +   Y        A
Sbjct: 236 GCIPDLYTYNTVIDMCGRGGLFAEAEGVFLEMQRKGCTPDRVTYNTMLDAYSKWSRRGRA 295

Query: 669 MEALQVL 675
            + L+ +
Sbjct: 296 RDLLKTM 302



 Score = 52.4 bits (124), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 82/400 (20%), Positives = 146/400 (36%), Gaps = 72/400 (18%)

Query: 65  RGERSRASHLLLNLG-HAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNK 123
           RG R +A  +   L  H  + L   +   I++   R        E +  M +  +  +  
Sbjct: 7   RGARRQALQVFRFLQEHLEYELKEHNCVTIISILGREGKLGLAREIFEGMSKAGVAPSVH 66

Query: 124 CYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAK-LHSMVHANLCLD 182
            Y  ++    K G L+EA  L   + E+ G  P +  YN+ + AC K  + +       +
Sbjct: 67  AYTALLSGYAKQGLLKEAWALFEAMKEK-GCSPNVLTYNTLINACTKRAYRLPDLVGLFE 125

Query: 183 LMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRD 242
            M    V  N++TY  ++   V                    LS+F              
Sbjct: 126 EMKQAGVQPNDITYNCMVNACV-------------------CLSLFD------------- 153

Query: 243 LKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHA 302
             +A + L+ M A+                           N LP +     S++ +I++
Sbjct: 154 --TASQILKEMKAV---------------------------NCLPNVI----SYTTMINS 180

Query: 303 CGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQ 362
            GR+     A +L  +M+ LG  P+S TY+  ++A   +      M +   M+     P 
Sbjct: 181 LGRSGRLDEAVELFEEMKELGRSPNSWTYNSLLKAYAREGRYEKAMCLFVGMEDEGCIPD 240

Query: 363 DSTIATLSVECSKALELDLAEALLDQISR--CTNPK-PFSAFLAACDTMDKPERAIKIFA 419
             T  T+   C +      AE +  ++ R  CT  +  ++  L A     +  RA  +  
Sbjct: 241 LYTYNTVIDMCGRGGLFAEAEGVFLEMQRKGCTPDRVTYNTMLDAYSKWSRRGRARDLLK 300

Query: 420 KM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSA 458
            M R    PD+ TY +L    G   +  E   +F ++ +A
Sbjct: 301 TMKRAGCTPDLWTYNILLDAAGKAGSASEAMQIFHELKAA 340


>gi|302822936|ref|XP_002993123.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
 gi|300139014|gb|EFJ05763.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
          Length = 569

 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 118/566 (20%), Positives = 211/566 (37%), Gaps = 96/566 (16%)

Query: 117 EIG-LNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMV 175
           E+G +N+  Y  ++  LCK   L+EA  L+  +  R G+ P   ++N  +G   +   + 
Sbjct: 74  ELGAVNHTTYYNLIHPLCKARLLDEAMGLLLDMKSR-GMNPGTLLHNVVIGGLCRAGRLR 132

Query: 176 HANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVW 235
           HA                        L V+++   A           +     +  K V 
Sbjct: 133 HA------------------------LGVYRQMNDA-----------HPPDFLTYTKLVH 157

Query: 236 SFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWS 295
             ++   L+ A + LQ MV                   S+R    +P N    + V    
Sbjct: 158 GLSKAGRLRDAVQVLQEMV-------------------SAR---HVPDNTTLTVVVQSLC 195

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVL-KIM 354
             D +           A +L+ +M   G+  ++ TY   +  +     L   + +L   +
Sbjct: 196 LGDRVDD---------ARELVEEMLHRGMAANAITYSALVDGLCKCERLDEAVALLLGEV 246

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAA-CDTMDKPER 413
            +    P   T +T+     KA  L  A  + +++S       +++ +   C   D  E 
Sbjct: 247 TRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMSCAPTAITYNSLIGGYCRAGDMDE- 305

Query: 414 AIKIFAKM-RQKLRPDIRTYELLFSLF---GNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
           AI++  KM      PD+ TY  L S F   G ++  YE   +F Q             M 
Sbjct: 306 AIRLLGKMVDDNCAPDVITYTTLMSAFCKMGRLDDAYE---LFQQ-------------MV 349

Query: 470 RNNIQHSHISMKNLLKALGAEGMIR---ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESH 526
            N +    ++  +L+  L  EG +    EL++       P    TYN V+    ++ +  
Sbjct: 350 ANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKSNQVR 409

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMI-DCCSIIRCFKSASALVSMMVRDGFYPQTMT-YTA 584
           +A E+    ++ G  PN  TYNI++  CC   R  ++   L  +    G  P ++  Y  
Sbjct: 410 KAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAI 469

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
           ++  L   G  D+A+   + +   G       + T++   C+  +      ++E+M +  
Sbjct: 470 ILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQAHELLEEMIKYG 529

Query: 645 VQPDPSTCHFVFSGYVNCGFHNSAME 670
             P P TC  V S Y   G    A E
Sbjct: 530 HTPGPGTCDAVVSAYCRAGMIQKADE 555



 Score = 70.9 bits (172), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 100/237 (42%), Gaps = 36/237 (15%)

Query: 478 ISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQ 534
           ++   L+  L   G +R+ +Q   +  +    P   T   V+ SL        A E+ ++
Sbjct: 150 LTYTKLVHGLSKAGRLRDAVQVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEE 209

Query: 535 MKTCGIPPNAATYNIMID-CCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL---- 589
           M   G+  NA TY+ ++D  C   R  ++ + L+  + R GF P  +TY+ +I  L    
Sbjct: 210 MLHRGMAANAITYSALVDGLCKCERLDEAVALLLGEVTRRGFTPDIVTYSTVIDGLCKAG 269

Query: 590 ------------------LDY----------GDFDEALNLLDLVSLEGIPHDVLLYNTIL 621
                             + Y          GD DEA+ LL  +  +    DV+ Y T++
Sbjct: 270 RLRDAVDIFEEMSCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDNCAPDVITYTTLM 329

Query: 622 KKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678
              C+ GR+D    + +QM  NK+ PD  T   +  G    G    A+E L+ ++ R
Sbjct: 330 SAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRR 386



 Score = 69.3 bits (168), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 78/388 (20%), Positives = 160/388 (41%), Gaps = 21/388 (5%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           ++ ++IH   + +    A  L+L M+S G+ P +  ++  I  +     LR+ + V +  
Sbjct: 82  TYYNLIHPLCKARLLDEAMGLLLDMKSRGMNPGTLLHNVVIGGLCRAGRLRHALGVYR-- 139

Query: 355 QQNNLKPQDS-TIATLSVECSKALEL-DLAEALLDQISRCTNPK--PFSAFLAACDTMDK 410
           Q N+  P D  T   L    SKA  L D  + L + +S    P     +  + +    D+
Sbjct: 140 QMNDAHPPDFLTYTKLVHGLSKAGRLRDAVQVLQEMVSARHVPDNTTLTVVVQSLCLGDR 199

Query: 411 PERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
            + A ++  +M  + +  +  TY  L                  ++D A  +  +  ++ 
Sbjct: 200 VDDARELVEEMLHRGMAANAITYSALVDGLCKCE----------RLDEA--VALLLGEVT 247

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAM 529
           R       ++   ++  L   G +R+ +  F +        TYN+++     A +   A+
Sbjct: 248 RRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMSCAPTAITYNSLIGGYCRAGDMDEAI 307

Query: 530 EIFKQMKTCGIPPNAATYNIMIDC-CSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
            +  +M      P+  TY  ++   C + R    A  L   MV +   P  +T+T+L+  
Sbjct: 308 RLLGKMVDDNCAPDVITYTTLMSAFCKMGR-LDDAYELFQQMVANKLSPDVVTFTSLVDG 366

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
           L   G  ++AL LL+ ++  G P  +  YN ++   C+  ++   E ++         P+
Sbjct: 367 LCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKSNQVRKAEELVADFRSRGFVPN 426

Query: 649 PSTCHFVFSGYVNCGFHNSAMEALQVLS 676
             T + + +G    G  + A++ L  L+
Sbjct: 427 TVTYNILVAGCCRAGRTDQALQYLDQLN 454



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 67/320 (20%), Positives = 122/320 (38%), Gaps = 44/320 (13%)

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGE--RYGIYPILPVYNSFLGACAK 170
           M  + +  N   Y  ++  LCK   L+EA  L+  LGE  R G  P +  Y++ +    K
Sbjct: 210 MLHRGMAANAITYSALVDGLCKCERLDEAVALL--LGEVTRRGFTPDIVTYSTVIDGLCK 267

Query: 171 LHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLS-AVHEIWEDYIKHYSLSIFS 229
              +  A   +D+ +        +TY  L+       ++  A+  + +    + +  + +
Sbjct: 268 AGRLRDA---VDIFEEMSCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDNCAPDVIT 324

Query: 230 LRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVM 289
               + +F ++  L  AYE  Q MVA                            N L   
Sbjct: 325 YTTLMSAFCKMGRLDDAYELFQQMVA----------------------------NKLSPD 356

Query: 290 KVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGME 349
            V   S  D +   GR ++   A +L+ ++   G  P+ +TY+  +        +R   E
Sbjct: 357 VVTFTSLVDGLCGEGRMED---ALELLEEITRRGCPPTIYTYNCVVDGYCKSNQVRKAEE 413

Query: 350 VLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAAC--DT 407
           ++   +     P   T   L   C +A   D A   LDQ++    P P S  + A   D 
Sbjct: 414 LVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDA 473

Query: 408 MDKPER---AIKIFAKMRQK 424
           + +  R   A++ + +M Q+
Sbjct: 474 LCRDGRTDDAVQFYEEMIQR 493


>gi|242046334|ref|XP_002461038.1| hypothetical protein SORBIDRAFT_02g039560 [Sorghum bicolor]
 gi|241924415|gb|EER97559.1| hypothetical protein SORBIDRAFT_02g039560 [Sorghum bicolor]
          Length = 595

 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 87/368 (23%), Positives = 161/368 (43%), Gaps = 33/368 (8%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           F+ +I    +   +G A ++   M   GL+P+  TY+  I ++  +  +R  + + K M 
Sbjct: 231 FTGLIDDLCKEGKTGKAAKVKDMMVQRGLEPNVVTYNVLINSLCKEGSVREALTLRKEMD 290

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPKP----FSAFLAACDTMDK 410
              + P   T  TL    S  LE+D A + L++ I   T  +P    F++ +     + +
Sbjct: 291 DKGVAPDVVTYNTLIAGLSGVLEMDEAMSFLEEMIQGDTVVEPDVVTFNSVIHGLCKIGR 350

Query: 411 PERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
             +A+K+   M ++    ++ TY  L   F  V+      N+  ++     I+ +E D  
Sbjct: 351 MTQAVKVREMMAERGCMCNLVTYNYLIGGFLRVHKVKMAMNLMDEL----AISGLEPDSF 406

Query: 470 RNNIQHSHIS-------MKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEA 522
             +I  +  S        +  L  +   G+  EL  Y      PL        L ++ + 
Sbjct: 407 TYSILINGFSKMWEVDRAEKFLCTMRQRGIKAELFHYI-----PL--------LAAMCQQ 453

Query: 523 QESHRAMEIFKQM-KTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMT 581
               RAM +F +M K CG+  +A  Y+ MI         K+   L+  M+ +G  P  +T
Sbjct: 454 GMMERAMGLFNEMDKNCGL--DAIAYSTMIHGACKSGDMKTVKQLIQDMLDEGLAPDAVT 511

Query: 582 YTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMH 641
           Y+ LI +    GD +EA  +L  ++  G   DV ++++++K    +G+ D +  +I +M 
Sbjct: 512 YSMLINMYAKLGDLEEAERVLKQMTASGFVPDVAVFDSLIKGYSAEGQTDKVLKLIHEMR 571

Query: 642 QNKVQPDP 649
              V  DP
Sbjct: 572 AKNVAFDP 579



 Score = 77.0 bits (188), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 109/516 (21%), Positives = 204/516 (39%), Gaps = 64/516 (12%)

Query: 266 RTSEGRLRSSR-LDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGL 324
           R     LR +R L + +   A P  +    S++ V+     ++ +G A  L+  MQ+ G+
Sbjct: 95  RRGGDHLRQARSLLVDMSREAHPAARPNAVSYTTVMRGLCASRRTGEAVALLRSMQASGV 154

Query: 325 QPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL-SVECSKALELDLAE 383
           +    TY   IR +     L   +E+L  M  + ++P     + L    C      D+ +
Sbjct: 155 RADVVTYGTLIRGLCDASELDAALELLDEMCGSGVQPNVVVYSCLLRGYCRSGRWQDVGK 214

Query: 384 ALLDQISRCTNPKP--FSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFG 440
              D   R   P    F+  +       K  +A K+   M Q+ L P++ TY +L     
Sbjct: 215 VFEDMSRRGIKPDVIMFTGLIDDLCKEGKTGKAAKVKDMMVQRGLEPNVVTYNVL----- 269

Query: 441 NVNAPYEEGNMFSQVDSAKRIN--AIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQ 498
            +N+  +EG++   +   K ++   +  D+   N   + +S   +L+   A   + E+IQ
Sbjct: 270 -INSLCKEGSVREALTLRKEMDDKGVAPDVVTYNTLIAGLS--GVLEMDEAMSFLEEMIQ 326

Query: 499 YFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIR 558
              D+       T+N+V+H L +     +A+++ + M   G   N  TYN +I     + 
Sbjct: 327 G--DTVVEPDVVTFNSVIHGLCKIGRMTQAVKVREMMAERGCMCNLVTYNYLIGGFLRVH 384

Query: 559 CFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPH------ 612
             K A  L+  +   G  P + TY+ LI       + D A   L  +   GI        
Sbjct: 385 KVKMAMNLMDELAISGLEPDSFTYSILINGFSKMWEVDRAEKFLCTMRQRGIKAELFHYI 444

Query: 613 ----------------------------DVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
                                       D + Y+T++  AC+ G +  ++ +I+ M    
Sbjct: 445 PLLAAMCQQGMMERAMGLFNEMDKNCGLDAIAYSTMIHGACKSGDMKTVKQLIQDMLDEG 504

Query: 645 VQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDFEDLILAEDSE 704
           + PD  T   + + Y   G    A   L+ ++      +V+        F+ LI    +E
Sbjct: 505 LAPDAVTYSMLINMYAKLGDLEEAERVLKQMTASGFVPDVAV-------FDSLIKGYSAE 557

Query: 705 AES-RILQFC-EDSNENLAFTAALLQLRWCTIVGFP 738
            ++ ++L+   E   +N+AF   ++     TI+  P
Sbjct: 558 GQTDKVLKLIHEMRAKNVAFDPKIIS----TIIRLP 589



 Score = 66.2 bits (160), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 73/156 (46%), Gaps = 9/156 (5%)

Query: 511 TYNTVLHSLVEAQESH--RAMEIFKQMKTCGIP---PNAATYNIMIDCCSIIRCFKSASA 565
           +YNTVL +L      H  +A  +   M     P   PNA +Y  ++      R    A A
Sbjct: 85  SYNTVLAALCRRGGDHLRQARSLLVDMSREAHPAARPNAVSYTTVMRGLCASRRTGEAVA 144

Query: 566 LVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKAC 625
           L+  M   G     +TY  LI+ L D  + D AL LLD +   G+  +V++Y+ +L+  C
Sbjct: 145 LLRSMQASGVRADVVTYGTLIRGLCDASELDAALELLDEMCGSGVQPNVVVYSCLLRGYC 204

Query: 626 EKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVN 661
             GR   +  + E M +  ++PD      +F+G ++
Sbjct: 205 RSGRWQDVGKVFEDMSRRGIKPDV----IMFTGLID 236


>gi|449438586|ref|XP_004137069.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Cucumis sativus]
          Length = 505

 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 89/467 (19%), Positives = 181/467 (38%), Gaps = 49/467 (10%)

Query: 195 TYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMV 254
           ++   L L     NL      + +Y+      ++S    + +F    ++   +E L  M 
Sbjct: 75  SFNNALDLLAKSGNLDRTWGFFTEYLGRTQFDVYSFGITIKAFCENGNVSKGFELLAQME 134

Query: 255 ALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQ 314
            + +   ++I                               ++ +I AC R  +   A+ 
Sbjct: 135 TMGVSPNVFI-------------------------------YTILIEACCRNGDIDQAKV 163

Query: 315 LMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECS 374
           +  +M  LGL  + + Y   I         ++G E+ + M+   + P   T  +L  E  
Sbjct: 164 MFSRMDDLGLAANQYIYTIMINGFFKKGYKKDGFELYQKMKLVGVLPNLYTYNSLITEYC 223

Query: 375 KALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIR 430
           +  +L LA  + D+IS+     N   ++  +       +  +A  +  +M R  + P  R
Sbjct: 224 RDGKLSLAFKVFDEISKRGVACNAVTYNILIGGLCRKGQVSKAEGLLERMKRAHINPTTR 283

Query: 431 TYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM--DMARNNIQHSHISMKNLLKALG 488
           T+ +L     N       G +   +   +++  I +   +   NI  S  S       +G
Sbjct: 284 TFNMLMDGLCNT------GQLDKALSYLEKLKLIGLCPTLVTYNILISGFS------KVG 331

Query: 489 AEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYN 548
              ++ EL++   D        TY  ++++ V + +  +A E+F  MK  G+ P+  TY 
Sbjct: 332 NSSVVSELVREMEDRGISPSKVTYTILMNTFVRSDDIEKAYEMFHLMKRIGLVPDQHTYG 391

Query: 549 IMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLE 608
           ++I    I      AS L   MV     P  + Y  +I       +  +AL  L+ +   
Sbjct: 392 VLIHGLCIKGNMVEASKLYKSMVEMHLQPNDVIYNTMINGYCKECNSYKALKFLEEMVKN 451

Query: 609 GIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFV 655
           G+  +V  Y + ++  C+ G+    + ++++M +  ++P  S C  V
Sbjct: 452 GVTPNVASYISTIQILCKDGKSIEAKRLLKEMTEAGLKPPESLCSKV 498



 Score = 71.6 bits (174), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/277 (22%), Positives = 104/277 (37%), Gaps = 40/277 (14%)

Query: 476 SHISMKNLLKALGAEGMIRELIQYFCD--SKTPLGTPTYNTVLHSLVEAQESHRAMEIFK 533
           S  S  N L  L   G +     +F +   +T     ++   + +  E     +  E+  
Sbjct: 72  SSFSFNNALDLLAKSGNLDRTWGFFTEYLGRTQFDVYSFGITIKAFCENGNVSKGFELLA 131

Query: 534 QMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM----------------------- 570
           QM+T G+ PN   Y I+I+ C        A  + S M                       
Sbjct: 132 QMETMGVSPNVFIYTILIEACCRNGDIDQAKVMFSRMDDLGLAANQYIYTIMINGFFKKG 191

Query: 571 -VRDGF-----------YPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYN 618
             +DGF            P   TY +LI      G    A  + D +S  G+  + + YN
Sbjct: 192 YKKDGFELYQKMKLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDEISKRGVACNAVTYN 251

Query: 619 TILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678
            ++   C KG++   E ++E+M +  + P   T + +  G  N G  + A+  L+ L + 
Sbjct: 252 ILIGGLCRKGQVSKAEGLLERMKRAHINPTTRTFNMLMDGLCNTGQLDKALSYLEKLKLI 311

Query: 679 MLCEEVSTLEEKRSDFEDLILAEDSEAESRILQFCED 715
            LC  + T     S F  +    +S   S +++  ED
Sbjct: 312 GLCPTLVTYNILISGFSKV---GNSSVVSELVREMED 345



 Score = 68.9 bits (167), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 78/392 (19%), Positives = 166/392 (42%), Gaps = 40/392 (10%)

Query: 335 IRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEAL---LDQISR 391
           I+A   +  +  G E+L  M+   + P       L   C +  ++D A+ +   +D +  
Sbjct: 114 IKAFCENGNVSKGFELLAQMETMGVSPNVFIYTILIEACCRNGDIDQAKVMFSRMDDLGL 173

Query: 392 CTNPKPFSAFLAACDTMDKPERAIKIFAKMR-QKLRPDIRTYELLFSLF---GNVNAPYE 447
             N   ++  +         +   +++ KM+   + P++ TY  L + +   G ++  ++
Sbjct: 174 AANQYIYTIMINGFFKKGYKKDGFELYQKMKLVGVLPNLYTYNSLITEYCRDGKLSLAFK 233

Query: 448 EGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPL 507
              +F ++  +KR   +  +    NI    +  K  +    AEG++  + +   +  T  
Sbjct: 234 ---VFDEI--SKR--GVACNAVTYNILIGGLCRKGQVSK--AEGLLERMKRAHINPTTR- 283

Query: 508 GTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALV 567
              T+N ++  L    +  +A+   +++K  G+ P   TYNI+I   S +      S LV
Sbjct: 284 ---TFNMLMDGLCNTGQLDKALSYLEKLKLIGLCPTLVTYNILISGFSKVGNSSVVSELV 340

Query: 568 SMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEK 627
             M   G  P  +TYT L+   +   D ++A  +  L+   G+  D   Y  ++   C K
Sbjct: 341 REMEDRGISPSKVTYTILMNTFVRSDDIEKAYEMFHLMKRIGLVPDQHTYGVLIHGLCIK 400

Query: 628 GRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ-------------- 673
           G +     + + M +  +QP+    + + +GY        A++ L+              
Sbjct: 401 GNMVEASKLYKSMVEMHLQPNDVIYNTMINGYCKECNSYKALKFLEEMVKNGVTPNVASY 460

Query: 674 VLSMRMLCEEVSTLEEKRSDFEDLILAEDSEA 705
           + ++++LC++  ++E KR      +L E +EA
Sbjct: 461 ISTIQILCKDGKSIEAKR------LLKEMTEA 486



 Score = 39.3 bits (90), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 54/252 (21%), Positives = 105/252 (41%), Gaps = 31/252 (12%)

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
           M+   I    + + ++M  LC  G L++A + +  L +  G+ P L  YN  +   +K+ 
Sbjct: 273 MKRAHINPTTRTFNMLMDGLCNTGQLDKALSYLEKL-KLIGLCPTLVTYNILISGFSKVG 331

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRK 232
           +    +  +  M+ R +  ++VTYT L+   V   ++   +E            +F L K
Sbjct: 332 NSSVVSELVREMEDRGISPSKVTYTILMNTFVRSDDIEKAYE------------MFHLMK 379

Query: 233 FVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVL 292
            +     L   +  Y  L H   L + G    N     +L  S +++ +  N +      
Sbjct: 380 RIG----LVPDQHTYGVLIH--GLCIKG----NMVEASKLYKSMVEMHLQPNDVI----- 424

Query: 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
              ++ +I+   +  NS  A + + +M   G+ P+  +Y   I+ +  D        +LK
Sbjct: 425 ---YNTMINGYCKECNSYKALKFLEEMVKNGVTPNVASYISTIQILCKDGKSIEAKRLLK 481

Query: 353 IMQQNNLKPQDS 364
            M +  LKP +S
Sbjct: 482 EMTEAGLKPPES 493


>gi|357167837|ref|XP_003581356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Brachypodium distachyon]
          Length = 524

 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 90/384 (23%), Positives = 165/384 (42%), Gaps = 61/384 (15%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQ-NNLKPQDSTIATLS 370
           A +L+ QM S    P++ TY+  I    +   ++ G+E+++ M++   + P   T AT+ 
Sbjct: 135 ALELLRQMPS----PNAVTYNTVIAGFCARGRVQAGIEIMREMRERGGIAPDKYTYATVI 190

Query: 371 VECSKALELDLAEALLDQISRCTNPKP----FSAFLAA-CD------------------- 406
               K  +++ A  + D++      +P    ++A +   CD                   
Sbjct: 191 SGWCKVGKVEDATKVFDEMLTEGKVEPNAVMYNALIGGYCDQGNLEVALRYRGEMVDRGV 250

Query: 407 ------------TMDKPERAIKIFA---KMRQK-LRPDIRTYELLFSLFGNVNAPYEEGN 450
                       T+    RA +  A   +M +K L PD  TY +L      +N   +EG 
Sbjct: 251 SMTVATYNLFVHTLFMEGRAAEAHALVEEMGEKGLAPDAFTYNIL------INGYCKEGK 304

Query: 451 MFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP 510
                   K +   E+ M    I+ + ++  +L+ AL  +GM++E  + F D+      P
Sbjct: 305 ------EKKAMKMFEV-MVGKGIRATVVTYTSLIHALSMKGMVQETDRLFNDAVRRGIRP 357

Query: 511 ---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALV 567
               YN +++S     +  RA EI  +M+   I P+  TYN ++    ++     A  L+
Sbjct: 358 DLFMYNALINSHCTGGDMDRAFEIMGEMEKKRITPDDVTYNTLMRGLCLLGRLDEARGLI 417

Query: 568 SMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEK 627
             M + G  P  ++Y  LI      GD  +A+ + D +  +G    +L YN ++K  C  
Sbjct: 418 EEMTKRGIQPDLVSYNTLISGYSMKGDIKDAVKVRDEMMGKGFNPTLLTYNAMIKGLCLN 477

Query: 628 GRIDVIEFIIEQMHQNKVQPDPST 651
           G+    E ++++M  N + PD ST
Sbjct: 478 GQGGDAEDLVKEMVGNGITPDDST 501



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 93/431 (21%), Positives = 174/431 (40%), Gaps = 45/431 (10%)

Query: 245 SAYETLQHMVALAMMGKLYINRTSEGRL---------RSSRLDIPIPLNAL-PVMKVLRW 294
           S    L H+ A   +  L +  +  GR          R   L +PIP  +L P++  L  
Sbjct: 38  SPLAVLPHLAATPSLPHLLLTASVAGRPHTTSLSLYSRLKSLSLPIPTASLHPLLSSLPP 97

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           + + V+ A                +  L L  S+ T++  +R + +       +E+L+ M
Sbjct: 98  APAFVLFA---------------DIFRLRLPLSTTTFNIMLRHLCTAGKPVRALELLRQM 142

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERA 414
              N    ++ IA           +++   + ++     +   ++  ++    + K E A
Sbjct: 143 PSPNAVTYNTVIAGFCARGRVQAGIEIMREMRERGGIAPDKYTYATVISGWCKVGKVEDA 202

Query: 415 IKIFAKM--RQKLRPDIRTYELLFSLF---GNVNAPYE-EGNMFSQVDSAKRINAIEMDM 468
            K+F +M    K+ P+   Y  L   +   GN+       G M  +         + M +
Sbjct: 203 TKVFDEMLTEGKVEPNAVMYNALIGGYCDQGNLEVALRYRGEMVDR--------GVSMTV 254

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRA 528
           A  N+    + M+   +A  A  ++ E+ +            TYN +++   +  +  +A
Sbjct: 255 ATYNLFVHTLFMEG--RAAEAHALVEEMGEKGLAPDAF----TYNILINGYCKEGKEKKA 308

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
           M++F+ M   GI     TY  +I   S+    +    L +  VR G  P    Y ALI  
Sbjct: 309 MKMFEVMVGKGIRATVVTYTSLIHALSMKGMVQETDRLFNDAVRRGIRPDLFMYNALINS 368

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
               GD D A  ++  +  + I  D + YNT+++  C  GR+D    +IE+M +  +QPD
Sbjct: 369 HCTGGDMDRAFEIMGEMEKKRITPDDVTYNTLMRGLCLLGRLDEARGLIEEMTKRGIQPD 428

Query: 649 PSTCHFVFSGY 659
             + + + SGY
Sbjct: 429 LVSYNTLISGY 439



 Score = 75.9 bits (185), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 126/289 (43%), Gaps = 15/289 (5%)

Query: 394 NPKPFSAFLAACDTMDKPERAIKIFAKMRQK--LRPDIRTYELLFSLFGNVNAPYEEGNM 451
           N   ++  +A      + +  I+I  +MR++  + PD  TY  + S +  V    +   +
Sbjct: 146 NAVTYNTVIAGFCARGRVQAGIEIMREMRERGGIAPDKYTYATVISGWCKVGKVEDATKV 205

Query: 452 FSQVDSAKRI--NAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGT 509
           F ++ +  ++  NA+      N +   +    NL  AL   G   E++    D    +  
Sbjct: 206 FDEMLTEGKVEPNAV----MYNALIGGYCDQGNLEVALRYRG---EMV----DRGVSMTV 254

Query: 510 PTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSM 569
            TYN  +H+L     +  A  + ++M   G+ P+A TYNI+I+        K A  +  +
Sbjct: 255 ATYNLFVHTLFMEGRAAEAHALVEEMGEKGLAPDAFTYNILINGYCKEGKEKKAMKMFEV 314

Query: 570 MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
           MV  G     +TYT+LI  L   G   E   L +     GI  D+ +YN ++   C  G 
Sbjct: 315 MVGKGIRATVVTYTSLIHALSMKGMVQETDRLFNDAVRRGIRPDLFMYNALINSHCTGGD 374

Query: 630 IDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678
           +D    I+ +M + ++ PD  T + +  G    G  + A   ++ ++ R
Sbjct: 375 MDRAFEIMGEMEKKRITPDDVTYNTLMRGLCLLGRLDEARGLIEEMTKR 423



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 95/215 (44%), Gaps = 13/215 (6%)

Query: 410 KPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
           K ++A+K+F  M  K +R  + TY  L           E   +F+  D+ +R   I  D+
Sbjct: 304 KEKKAMKMFEVMVGKGIRATVVTYTSLIHALSMKGMVQETDRLFN--DAVRR--GIRPDL 359

Query: 469 -ARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHR 527
              N + +SH +  ++ +A        E++      +      TYNT++  L        
Sbjct: 360 FMYNALINSHCTGGDMDRAF-------EIMGEMEKKRITPDDVTYNTLMRGLCLLGRLDE 412

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A  + ++M   GI P+  +YN +I   S+    K A  +   M+  GF P  +TY A+IK
Sbjct: 413 ARGLIEEMTKRGIQPDLVSYNTLISGYSMKGDIKDAVKVRDEMMGKGFNPTLLTYNAMIK 472

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILK 622
            L   G   +A +L+  +   GI  D   Y ++++
Sbjct: 473 GLCLNGQGGDAEDLVKEMVGNGITPDDSTYISLIE 507


>gi|357499659|ref|XP_003620118.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
 gi|355495133|gb|AES76336.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
          Length = 841

 Score = 82.4 bits (202), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 79/317 (24%), Positives = 133/317 (41%), Gaps = 46/317 (14%)

Query: 420 KMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHIS 479
           K+ +++ PD+ TY  L S F  V    +  ++F++             M   NI     +
Sbjct: 359 KVSKRIFPDVFTYNALISGFCIVGKLKDAIDLFNK-------------MTSKNIIPDVYT 405

Query: 480 MKNLLKALGAEGMIRE----LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQM 535
              L+     +G I+E    L      S  P    TY++++       E ++A  IF  M
Sbjct: 406 FSILVDGFCKDGNIKEAKNVLAMMMKQSIKP-DVVTYSSLMDGYCLVNEVNKAESIFNTM 464

Query: 536 KTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDF 595
              G+  N  +YNIMI+    I+    A  L   M     +P  +TY++LI  L   G  
Sbjct: 465 SHRGVTANVQSYNIMINGFCKIKMVDEAMKLFKEMHHKQIFPDVITYSSLIDGLCKSGRI 524

Query: 596 DEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFV 655
             AL L+D +   G   D++ YN+IL   C+K  +D    ++ ++    ++PD +T   +
Sbjct: 525 SYALELVDEMHYRGQQPDIITYNSILDALCKKHHVDKAITLLTKLKGQGIRPDMNTYTIL 584

Query: 656 FSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDFEDLILAE---DSEAESRILQ- 711
             G                     LC+    LE+ R  FEDL++     D  A + ++Q 
Sbjct: 585 VKG---------------------LCQS-GKLEDARKVFEDLLVKGYNLDVYAYTVMIQG 622

Query: 712 FCEDS--NENLAFTAAL 726
           FC+    +E LA  + +
Sbjct: 623 FCDKGLFDEALALLSKM 639



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 77/365 (21%), Positives = 149/365 (40%), Gaps = 22/365 (6%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           S+  +I+   +   +  A +L+ +     +QP    Y+  I  +  D+ + +  ++    
Sbjct: 300 SYGTLINGLCKVGETKAALELLRRNDGKLVQPDVVMYNTIIDGMCKDKHVNDAFDLYSEK 359

Query: 355 QQNNLKPQDSTI-ATLSVECSKALELDLAEALLDQISRCTNPKPFSAFL---AACDTMDK 410
               + P   T  A +S  C      D  +      S+   P  ++  +     C   + 
Sbjct: 360 VSKRIFPDVFTYNALISGFCIVGKLKDAIDLFNKMTSKNIIPDVYTFSILVDGFCKDGNI 419

Query: 411 PERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI-NAIEMDMA 469
            E    +   M+Q ++PD+ TY  L   +  VN          +V+ A+ I N +     
Sbjct: 420 KEAKNVLAMMMKQSIKPDVVTYSSLMDGYCLVN----------EVNKAESIFNTMSHRGV 469

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESH 526
             N+Q  +I +    K      M+ E ++ F +       P   TY++++  L ++    
Sbjct: 470 TANVQSYNIMINGFCKI----KMVDEAMKLFKEMHHKQIFPDVITYSSLIDGLCKSGRIS 525

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
            A+E+  +M   G  P+  TYN ++D          A  L++ +   G  P   TYT L+
Sbjct: 526 YALELVDEMHYRGQQPDIITYNSILDALCKKHHVDKAITLLTKLKGQGIRPDMNTYTILV 585

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
           K L   G  ++A  + + + ++G   DV  Y  +++  C+KG  D    ++ +M +N   
Sbjct: 586 KGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTVMIQGFCDKGLFDEALALLSKMEENGCI 645

Query: 647 PDPST 651
           PD  T
Sbjct: 646 PDAKT 650



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/221 (22%), Positives = 96/221 (43%), Gaps = 5/221 (2%)

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLG----TPTYNTVLHSLVEAQES 525
           +N  +   I++   +K    +G I + + +F D    +G      +Y T+++ L +  E+
Sbjct: 256 KNGYEPDTITLTTFIKGFCLKGQIHQAL-HFHDKVIAMGFHLDQVSYGTLINGLCKVGET 314

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
             A+E+ ++     + P+   YN +ID     +    A  L S  V    +P   TY AL
Sbjct: 315 KAALELLRRNDGKLVQPDVVMYNTIIDGMCKDKHVNDAFDLYSEKVSKRIFPDVFTYNAL 374

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           I      G   +A++L + ++ + I  DV  ++ ++   C+ G I   + ++  M +  +
Sbjct: 375 ISGFCIVGKLKDAIDLFNKMTSKNIIPDVYTFSILVDGFCKDGNIKEAKNVLAMMMKQSI 434

Query: 646 QPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           +PD  T   +  GY      N A      +S R +   V +
Sbjct: 435 KPDVVTYSSLMDGYCLVNEVNKAESIFNTMSHRGVTANVQS 475



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 63/292 (21%), Positives = 127/292 (43%), Gaps = 19/292 (6%)

Query: 387 DQISRCTNPKPFS--AFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVN 443
           +++S+   P  F+  A ++    + K + AI +F KM  K + PD+ T+ +L      V+
Sbjct: 358 EKVSKRIFPDVFTYNALISGFCIVGKLKDAIDLFNKMTSKNIIPDVYTFSIL------VD 411

Query: 444 APYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRE---LIQYF 500
              ++GN    +  AK + A+   M + +I+   ++  +L+        + +   +    
Sbjct: 412 GFCKDGN----IKEAKNVLAM---MMKQSIKPDVVTYSSLMDGYCLVNEVNKAESIFNTM 464

Query: 501 CDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCF 560
                     +YN +++   + +    AM++FK+M    I P+  TY+ +ID        
Sbjct: 465 SHRGVTANVQSYNIMINGFCKIKMVDEAMKLFKEMHHKQIFPDVITYSSLIDGLCKSGRI 524

Query: 561 KSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTI 620
             A  LV  M   G  P  +TY +++  L      D+A+ LL  +  +GI  D+  Y  +
Sbjct: 525 SYALELVDEMHYRGQQPDIITYNSILDALCKKHHVDKAITLLTKLKGQGIRPDMNTYTIL 584

Query: 621 LKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEAL 672
           +K  C+ G+++    + E +       D      +  G+ + G  + A+  L
Sbjct: 585 VKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTVMIQGFCDKGLFDEALALL 636



 Score = 60.1 bits (144), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/175 (21%), Positives = 80/175 (45%)

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           YNT++  + + +  + A +++ +  +  I P+  TYN +I    I+   K A  L + M 
Sbjct: 336 YNTIIDGMCKDKHVNDAFDLYSEKVSKRIFPDVFTYNALISGFCIVGKLKDAIDLFNKMT 395

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
                P   T++ L+      G+  EA N+L ++  + I  DV+ Y++++   C    ++
Sbjct: 396 SKNIIPDVYTFSILVDGFCKDGNIKEAKNVLAMMMKQSIKPDVVTYSSLMDGYCLVNEVN 455

Query: 632 VIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
             E I   M    V  +  + + + +G+      + AM+  + +  + +  +V T
Sbjct: 456 KAESIFNTMSHRGVTANVQSYNIMINGFCKIKMVDEAMKLFKEMHHKQIFPDVIT 510



 Score = 44.7 bits (104), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 53/232 (22%), Positives = 94/232 (40%), Gaps = 18/232 (7%)

Query: 10  FQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISK--ATQMQIVDALC-RG 66
           F ++ D FCK            N  E    L   M   ++SI     T   ++D  C   
Sbjct: 406 FSILVDGFCKD----------GNIKEAKNVLAMMM---KQSIKPDVVTYSSLMDGYCLVN 452

Query: 67  ERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYL 126
           E ++A  +   + H   +     +  ++N   +       M+ ++ M  K+I  +   Y 
Sbjct: 453 EVNKAESIFNTMSHRGVTANVQSYNIMINGFCKIKMVDEAMKLFKEMHHKQIFPDVITYS 512

Query: 127 LMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDS 186
            ++  LCK G +  A  L+  +  R G  P +  YNS L A  K H +  A   L  +  
Sbjct: 513 SLIDGLCKSGRISYALELVDEMHYR-GQQPDIITYNSILDALCKKHHVDKAITLLTKLKG 571

Query: 187 RMVGKNEVTYTELLKLAVWQKNLSAVHEIWED-YIKHYSLSIFSLRKFVWSF 237
           + +  +  TYT L+K       L    +++ED  +K Y+L +++    +  F
Sbjct: 572 QGIRPDMNTYTILVKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTVMIQGF 623


>gi|413922209|gb|AFW62141.1| hypothetical protein ZEAMMB73_911481 [Zea mays]
          Length = 700

 Score = 82.4 bits (202), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 74/376 (19%), Positives = 153/376 (40%), Gaps = 20/376 (5%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           +++S +     RT  S     L  +    G+   ++T    +  +  D  +    +V ++
Sbjct: 300 FTYSILFDGLTRTGESQTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAKQVFEM 359

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI-SRCTNPK--PFSAFLAACDTMDK 410
           +    L P      TL     +  +L  A  + +Q+ SR   P    ++A +     ++ 
Sbjct: 360 LVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEM 419

Query: 411 PERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
             +A  +  +M +  + P + T+  L   +G                  ++   +  DM 
Sbjct: 420 VTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAG-------------QLEKCFTVLSDMQ 466

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCD---SKTPLGTPTYNTVLHSLVEAQESH 526
           +  I+   IS  +++KA    G I E +    D            YN+++ + +E+ ++ 
Sbjct: 467 QKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTE 526

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
           +A+ + ++MK  G+  +  TYN+++           A  L+  +   G  P  ++Y  +I
Sbjct: 527 QALLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTII 586

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
               + GD D+AL LL  ++  GI   +   +T++      GR+  +E + +QM    V+
Sbjct: 587 SACCNKGDTDKALELLQEMNKYGIRPTLRTCHTLVSALASAGRVHDMECLYQQMLHKNVE 646

Query: 647 PDPSTCHFVFSGYVNC 662
           P  S    +   YV C
Sbjct: 647 PSSSIYGIMVDAYVRC 662



 Score = 80.9 bits (198), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 77/379 (20%), Positives = 147/379 (38%), Gaps = 47/379 (12%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           +S++ VI    R+     A ++  +M  +G+ P+  TY+  I   V    L  G  +   
Sbjct: 195 FSYNVVIAGLWRSGKGSDALKVFDEMVDMGVAPNRITYNTMIDGHVKGGDLEAGFRLRDQ 254

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPER 413
           M  +  KP   T   L     +   +D   AL+D+++                       
Sbjct: 255 MLHDGPKPNVVTYNVLLSGLCRTGRMDETRALMDEMAS---------------------- 292

Query: 414 AIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNI 473
                      + PD  TY +LF             +  ++   ++ + ++  +  +  +
Sbjct: 293 ---------HSMLPDGFTYSILF-------------DGLTRTGESQTMLSLFAESLKKGV 330

Query: 474 QHSHISMKNLLKALGAEGMIRELIQYF---CDSKTPLGTPTYNTVLHSLVEAQESHRAME 530
                +   LL  L  +G + +  Q F     +     T  YNT+++   + ++   A  
Sbjct: 331 MLGAYTCSILLNGLCKDGKVAKAKQVFEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFC 390

Query: 531 IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590
           IF+QMK+  I P+  TYN +I+    +     A  LV  M + G  P   T+  LI    
Sbjct: 391 IFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYG 450

Query: 591 DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650
             G  ++   +L  +  +GI  DV+ + +++K  C+ G+I     I++ M    V P+  
Sbjct: 451 TAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQ 510

Query: 651 TCHFVFSGYVNCGFHNSAM 669
             + +   Y+  G    A+
Sbjct: 511 VYNSIIDAYIESGDTEQAL 529



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 109/254 (42%), Gaps = 17/254 (6%)

Query: 414 AIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNN 472
           A  IF +M+ + +RPD  TY  L              N   +++   +   + M+M ++ 
Sbjct: 388 AFCIFEQMKSRHIRPDHITYNALI-------------NGLCKLEMVTKAEDLVMEMEKSG 434

Query: 473 IQHSHISMKNLLKALGAEGMIRELIQYFCDSK---TPLGTPTYNTVLHSLVEAQESHRAM 529
           +  S  +   L+ A G  G + +      D +         ++ +V+ +  +  +   A+
Sbjct: 435 VDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAV 494

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
            I   M    + PNA  YN +ID        + A  LV  M   G     +TY  L+K L
Sbjct: 495 AILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQALLLVEKMKNSGVSASIVTYNLLLKGL 554

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649
                 DEA  L+  +  +G+  DV+ YNTI+   C KG  D    ++++M++  ++P  
Sbjct: 555 CRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTL 614

Query: 650 STCHFVFSGYVNCG 663
            TCH + S   + G
Sbjct: 615 RTCHTLVSALASAG 628



 Score = 59.3 bits (142), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 69/165 (41%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           +YN V+  L  + +   A+++F +M   G+ PN  TYN MID        ++   L   M
Sbjct: 196 SYNVVIAGLWRSGKGSDALKVFDEMVDMGVAPNRITYNTMIDGHVKGGDLEAGFRLRDQM 255

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           + DG  P  +TY  L+  L   G  DE   L+D ++   +  D   Y+ +       G  
Sbjct: 256 LHDGPKPNVVTYNVLLSGLCRTGRMDETRALMDEMASHSMLPDGFTYSILFDGLTRTGES 315

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
             +  +  +  +  V     TC  + +G    G    A +  ++L
Sbjct: 316 QTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAKQVFEML 360



 Score = 45.8 bits (107), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 64/347 (18%), Positives = 144/347 (41%), Gaps = 23/347 (6%)

Query: 59  IVDALCRGERSRASHLLLNLGHAHHSLGADDFFH--ILNYCARSPDPLFVMETWRMMEEK 116
           ++  LCR  R   +  L++   A HS+  D F +  + +   R+ +   ++  +    +K
Sbjct: 270 LLSGLCRTGRMDETRALMD-EMASHSMLPDGFTYSILFDGLTRTGESQTMLSLFAESLKK 328

Query: 117 EIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVH 176
            + L      +++  LCK G + +A  +   L    G+ P   +YN+ +    ++  +  
Sbjct: 329 GVMLGAYTCSILLNGLCKDGKVAKAKQVFEML-VHTGLVPTTVIYNTLINGYCQVRDLRG 387

Query: 177 ANLCLDLMDSRMVGKNEVTYTELL----KLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRK 232
           A    + M SR +  + +TY  L+    KL +  K    V E+ +  +     S+ +   
Sbjct: 388 AFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDP---SVETFNT 444

Query: 233 FVWSFTRLRDLKSAYETLQHMVALAM------MGKLYINRTSEGRLRSSR--LDIPIPLN 284
            + ++     L+  +  L  M    +       G +       G++  +   LD  I  +
Sbjct: 445 LIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKD 504

Query: 285 ALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGL 344
             P  +V    ++ +I A   + ++  A  L+ +M++ G+  S  TY+  ++ +     +
Sbjct: 505 VAPNAQV----YNSIIDAYIESGDTEQALLLVEKMKNSGVSASIVTYNLLLKGLCRSSQI 560

Query: 345 RNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR 391
               E++  ++   L+P   +  T+   C    + D A  LL ++++
Sbjct: 561 DEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNK 607


>gi|168024390|ref|XP_001764719.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162684013|gb|EDQ70418.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1020

 Score = 82.4 bits (202), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 69/334 (20%), Positives = 150/334 (44%), Gaps = 20/334 (5%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           ++ +I AC +     L  Q++ +M   G++ + HT+   I        L        IM 
Sbjct: 344 YTTLISACSKAGKVDLLFQILHEMDVAGVEANVHTFGAMIDGCARAGQLPKAFGAYGIMI 403

Query: 356 QNNLKPQDSTIATLSVECSKALELDLA-EALLDQISRCTNPKP----FSAFLAACDTMDK 410
             ++KP      TL   CS+   +  A + L D  S  T  KP    + A ++AC    +
Sbjct: 404 SKDVKPDRVIFNTLINACSRVGAVQRAFDVLADMKSEATPVKPDHVTYGALISACAKGGE 463

Query: 411 PERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
             RA++++  MR+    D++ +   ++    V+A  ++G++   +       AI  D+ +
Sbjct: 464 VGRALEVYQSMREN---DVKGFLACYT--AAVHACSQKGDLDYAL-------AIYDDLLK 511

Query: 471 NNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHR 527
           + ++   +    L+ A G  G + +   ++     S    G   Y++++       E  +
Sbjct: 512 DGVKPDEVFFSALVDAAGHSGDVDKAFSILDIMRKSGMKPGAVVYSSLMGVCSNLGEWEK 571

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
            +E+++ +++  + P  +TYN ++      + F  A ++++ +   G  P  ++Y+ L+K
Sbjct: 572 GLEVYEGIRSSKLRPTVSTYNALMTALCEAKQFDRALSVLNDLKDAGRTPNQVSYSILLK 631

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTIL 621
                G  D AL+L      EGI  ++++ ++I+
Sbjct: 632 ACEREGKADMALDLYTTARAEGIKPNLVICDSII 665



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 72/375 (19%), Positives = 144/375 (38%), Gaps = 57/375 (15%)

Query: 283 LNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDR 342
           L+ L +MKV    F +V    G  +++    ++M    +L        Y   +      +
Sbjct: 267 LDKLSLMKVNHSKFYEVCKTKGTVEDAFTFAKIMRVYSTL------QHYTMLLSVCCHAK 320

Query: 343 GLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRC---TNPKPFS 399
            +   + VL +++    K       TL   CSKA ++DL   +L ++       N   F 
Sbjct: 321 DIDGALRVLALVESRGFKADCVFYTTLISACSKAGKVDLLFQILHEMDVAGVEANVHTFG 380

Query: 400 AFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSA 458
           A +  C    +  +A   +  M  K ++PD   +  L              N  S+V + 
Sbjct: 381 AMIDGCARAGQLPKAFGAYGIMISKDVKPDRVIFNTLI-------------NACSRVGAV 427

Query: 459 KRINAIEMDMAR--NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVL 516
           +R   +  DM      ++  H+                                TY  ++
Sbjct: 428 QRAFDVLADMKSEATPVKPDHV--------------------------------TYGALI 455

Query: 517 HSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFY 576
            +  +  E  RA+E+++ M+   +    A Y   +  CS       A A+   +++DG  
Sbjct: 456 SACAKGGEVGRALEVYQSMRENDVKGFLACYTAAVHACSQKGDLDYALAIYDDLLKDGVK 515

Query: 577 PQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFI 636
           P  + ++AL+      GD D+A ++LD++   G+    ++Y++++      G  +    +
Sbjct: 516 PDEVFFSALVDAAGHSGDVDKAFSILDIMRKSGMKPGAVVYSSLMGVCSNLGEWEKGLEV 575

Query: 637 IEQMHQNKVQPDPST 651
            E +  +K++P  ST
Sbjct: 576 YEGIRSSKLRPTVST 590



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 84/409 (20%), Positives = 152/409 (37%), Gaps = 85/409 (20%)

Query: 154 IYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVH 213
           +Y  L  Y   L  C     +  A   L L++SR    + V YT L+        +  + 
Sbjct: 302 VYSTLQHYTMLLSVCCHAKDIDGALRVLALVESRGFKADCVFYTTLISACSKAGKVDLLF 361

Query: 214 EIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLR 273
           +I       + + +  +   V +F  + D              A  G+L     + G + 
Sbjct: 362 QIL------HEMDVAGVEANVHTFGAMID------------GCARAGQLPKAFGAYGIMI 403

Query: 274 SSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQS--LGLQPSSHTY 331
           S  +            K  R  F+ +I+AC R      A  ++  M+S    ++P   TY
Sbjct: 404 SKDV------------KPDRVIFNTLINACSRVGAVQRAFDVLADMKSEATPVKPDHVTY 451

Query: 332 DGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR 391
              I A      +   +EV + M++N++K   +        CS+  +LD A A+ D + +
Sbjct: 452 GALISACAKGGEVGRALEVYQSMRENDVKGFLACYTAAVHACSQKGDLDYALAIYDDLLK 511

Query: 392 CTNPKP----FSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPY 446
               KP    FSA + A       ++A  I   MR+  ++P    Y  L  +  N+   +
Sbjct: 512 -DGVKPDEVFFSALVDAAGHSGDVDKAFSILDIMRKSGMKPGAVVYSSLMGVCSNLGE-W 569

Query: 447 EEG-NMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKT 505
           E+G  ++  + S+K                                 +R  +        
Sbjct: 570 EKGLEVYEGIRSSK---------------------------------LRPTVS------- 589

Query: 506 PLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCC 554
                TYN ++ +L EA++  RA+ +   +K  G  PN  +Y+I++  C
Sbjct: 590 -----TYNALMTALCEAKQFDRALSVLNDLKDAGRTPNQVSYSILLKAC 633



 Score = 48.9 bits (115), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 38/177 (21%), Positives = 72/177 (40%), Gaps = 2/177 (1%)

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIP--PNAATYNIMIDCCSIIRCFKSASALVSM 569
           +NT++++        RA ++   MK+   P  P+  TY  +I  C+       A  +   
Sbjct: 414 FNTLINACSRVGAVQRAFDVLADMKSEATPVKPDHVTYGALISACAKGGEVGRALEVYQS 473

Query: 570 MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
           M  +        YTA +      GD D AL + D +  +G+  D + ++ ++  A   G 
Sbjct: 474 MRENDVKGFLACYTAAVHACSQKGDLDYALAIYDDLLKDGVKPDEVFFSALVDAAGHSGD 533

Query: 630 IDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           +D    I++ M ++ ++P       +     N G     +E  + +    L   VST
Sbjct: 534 VDKAFSILDIMRKSGMKPGAVVYSSLMGVCSNLGEWEKGLEVYEGIRSSKLRPTVST 590



 Score = 40.8 bits (94), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 25/100 (25%), Positives = 43/100 (43%)

Query: 576 YPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEF 635
           Y     YT L+ +     D D AL +L LV   G   D + Y T++    + G++D++  
Sbjct: 303 YSTLQHYTMLLSVCCHAKDIDGALRVLALVESRGFKADCVFYTTLISACSKAGKVDLLFQ 362

Query: 636 IIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
           I+ +M    V+ +  T   +  G    G    A  A  ++
Sbjct: 363 ILHEMDVAGVEANVHTFGAMIDGCARAGQLPKAFGAYGIM 402


>gi|224030417|gb|ACN34284.1| unknown [Zea mays]
 gi|413950072|gb|AFW82721.1| hypothetical protein ZEAMMB73_503137 [Zea mays]
          Length = 647

 Score = 82.4 bits (202), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 80/379 (21%), Positives = 154/379 (40%), Gaps = 30/379 (7%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           ++ +I A  R    G    +   M+  G+ P+  TY+  +RA+  +  +    ++L  M 
Sbjct: 131 YNHLIDALLRENMVGAVVLVYDNMRKDGVHPNVFTYNLLVRALCQNNRVGAARKMLDEMA 190

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSA-----FLAACDTMDK 410
           +    P D T AT+     K   LD A  +L  +       P +A      LA C     
Sbjct: 191 RKGCPPDDVTYATIVSVLCKLDRLDEATEVLAAM------PPVAASYNAIVLALCREFRM 244

Query: 411 PERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
            E    +   + + L+P++ TY  +              + F +    +   AI   M  
Sbjct: 245 QEVFSVVSDMVGRGLQPNVITYTTIV-------------DAFCKAGELRMACAILARMVI 291

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELI---QYFCDSKTPLGTPTYNTVLHSLVEAQESHR 527
                + ++   L++ L  +G + + +   ++         T +YN ++  L    +   
Sbjct: 292 TGCTPNVVTFTALVRGLFDDGRVHDALDMWRWMVAEGWAPSTVSYNILIRGLCSVGDLKG 351

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A  I   M+  G  PN  TY+ +ID  S       A ++ + M R G  P  + YT ++ 
Sbjct: 352 ASSILNSMEQHGCFPNVRTYSTLIDGFSKAGDLGGAISIWNDMSRSGCKPNVVVYTNMVD 411

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
           +      F++A +L+D + LE  P + + +NT+++  C+  R+     +  +M ++   P
Sbjct: 412 VFCKKLMFNQAKSLIDKMLLENCPPNTVTFNTLIRSLCDCRRVGRALGVFHEMRRHGCVP 471

Query: 648 DPSTCHFVFSGYV---NCG 663
           +  T + +  G     NCG
Sbjct: 472 NGRTYNELIHGLFREGNCG 490



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 107/528 (20%), Positives = 212/528 (40%), Gaps = 67/528 (12%)

Query: 144 LIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLA 203
           L+Y    + G++P +  YN  + A  + + +  A   LD M  +    ++VTY  ++ + 
Sbjct: 149 LVYDNMRKDGVHPNVFTYNLLVRALCQNNRVGAARKMLDEMARKGCPPDDVTYATIVSVL 208

Query: 204 VWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLY 263
                L    E+    +        S    V +  R   ++  +  +  MV   +   + 
Sbjct: 209 CKLDRLDEATEV----LAAMPPVAASYNAIVLALCREFRMQEVFSVVSDMVGRGLQPNVI 264

Query: 264 INRT------SEGRLRSS-----RLDIP-IPLNALPVMKVLRWSFSDVIHACGRTQNSGL 311
              T        G LR +     R+ I     N +    ++R  F D     GR  +   
Sbjct: 265 TYTTIVDAFCKAGELRMACAILARMVITGCTPNVVTFTALVRGLFDD-----GRVHD--- 316

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A  +   M + G  PS+ +Y+  IR + S   L+    +L  M+Q+   P   T +TL  
Sbjct: 317 ALDMWRWMVAEGWAPSTVSYNILIRGLCSVGDLKGASSILNSMEQHGCFPNVRTYSTLID 376

Query: 372 ECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRT 431
             SKA +L  A ++ + +SR           + C    KP   + ++  M      D+  
Sbjct: 377 GFSKAGDLGGAISIWNDMSR-----------SGC----KPN--VVVYTNMV-----DVFC 414

Query: 432 YELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEG 491
            +L+F+               S +D     N     +  N +  S    + + +ALG   
Sbjct: 415 KKLMFN------------QAKSLIDKMLLENCPPNTVTFNTLIRSLCDCRRVGRALG--- 459

Query: 492 MIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI 551
           +  E+ ++ C    P G  TYN ++H L        A+ +  +M++ GI  +  TYN ++
Sbjct: 460 VFHEMRRHGC---VPNGR-TYNELIHGLFREGNCGDALHMVTEMQSHGIELSLVTYNTVV 515

Query: 552 DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIP 611
                 R  + A   V  M+  G  P   T++A+I      G+   A  +L  +++    
Sbjct: 516 SGLCQTRMSREAMVFVGKMIVQGIQPNAFTFSAIIHAYCKEGEVRMAAWMLGAMNVVNCH 575

Query: 612 HDVLLYNTILKKACEKGR-IDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
            ++L+Y  ++ + C + + +D + ++++ +++  + P+  T + +  G
Sbjct: 576 RNILVYTILMAELCNQDKLVDAMTYLLKMLYEG-IYPNTVTWNVLVRG 622



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/275 (21%), Positives = 114/275 (41%), Gaps = 16/275 (5%)

Query: 390 SRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEE 448
           +R T P+ ++  + A    +     + ++  MR+  + P++ TY LL       N     
Sbjct: 123 ARPTEPRLYNHLIDALLRENMVGAVVLVYDNMRKDGVHPNVFTYNLLVRALCQNN----- 177

Query: 449 GNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLG 508
                +V +A+++     +MAR       ++   ++  L     + E  +    +  P  
Sbjct: 178 -----RVGAARKMLD---EMARKGCPPDDVTYATIVSVLCKLDRLDEATEVL--AAMPPV 227

Query: 509 TPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVS 568
             +YN ++ +L           +   M   G+ PN  TY  ++D        + A A+++
Sbjct: 228 AASYNAIVLALCREFRMQEVFSVVSDMVGRGLQPNVITYTTIVDAFCKAGELRMACAILA 287

Query: 569 MMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
            MV  G  P  +T+TAL++ L D G   +AL++   +  EG     + YN +++  C  G
Sbjct: 288 RMVITGCTPNVVTFTALVRGLFDDGRVHDALDMWRWMVAEGWAPSTVSYNILIRGLCSVG 347

Query: 629 RIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
            +     I+  M Q+   P+  T   +  G+   G
Sbjct: 348 DLKGASSILNSMEQHGCFPNVRTYSTLIDGFSKAG 382



 Score = 45.8 bits (107), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 49/257 (19%), Positives = 102/257 (39%), Gaps = 41/257 (15%)

Query: 454 QVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGA---EGMIRELIQYFCDSKTPLGT- 509
           ++ +A  ++ +++ +    ++    +   L+ A+GA    G     ++ F  +   LG  
Sbjct: 64  RLAAAGDVDGVQLALQEMRLRGVPCTEGALVAAVGAFARAGAPDRALKTFYRAVHDLGCA 123

Query: 510 -PT----YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSAS 564
            PT    YN ++ +L+        + ++  M+  G+ PN  TYN+++          +A 
Sbjct: 124 RPTEPRLYNHLIDALLRENMVGAVVLVYDNMRKDGVHPNVFTYNLLVRALCQNNRVGAAR 183

Query: 565 ALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL---------------------- 602
            ++  M R G  P  +TY  ++ +L      DEA  +L                      
Sbjct: 184 KMLDEMARKGCPPDDVTYATIVSVLCKLDRLDEATEVLAAMPPVAASYNAIVLALCREFR 243

Query: 603 ---------DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCH 653
                    D+V   G+  +V+ Y TI+   C+ G + +   I+ +M      P+  T  
Sbjct: 244 MQEVFSVVSDMVG-RGLQPNVITYTTIVDAFCKAGELRMACAILARMVITGCTPNVVTFT 302

Query: 654 FVFSGYVNCGFHNSAME 670
            +  G  + G  + A++
Sbjct: 303 ALVRGLFDDGRVHDALD 319


>gi|449530582|ref|XP_004172273.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Cucumis sativus]
          Length = 505

 Score = 82.4 bits (202), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 89/467 (19%), Positives = 181/467 (38%), Gaps = 49/467 (10%)

Query: 195 TYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMV 254
           ++   L L     NL      + +Y+      ++S    + +F    ++   +E L  M 
Sbjct: 75  SFNNALDLLAKSGNLDRTWGFFTEYLGRTQFDVYSFWITIKAFCENGNVSKGFELLAQME 134

Query: 255 ALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQ 314
            + +   ++I                               ++ +I AC R  +   A+ 
Sbjct: 135 TMGVSPNVFI-------------------------------YTILIEACCRNGDIDQAKV 163

Query: 315 LMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECS 374
           +  +M  LGL  + + Y   I         ++G E+ + M+   + P   T  +L  E  
Sbjct: 164 MFSRMDDLGLAANQYIYTIMINGFFKKGYKKDGFELYQKMKLVGVLPNLYTYNSLITEYC 223

Query: 375 KALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIR 430
           +  +L LA  + D+IS+     N   ++  +       +  +A  +  +M R  + P  R
Sbjct: 224 RDGKLSLAFKVFDEISKRGVACNAVTYNILIGGLCRKGQVSKAEGLLERMKRAHINPTTR 283

Query: 431 TYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM--DMARNNIQHSHISMKNLLKALG 488
           T+ +L     N       G +   +   +++  I +   +   NI  S  S       +G
Sbjct: 284 TFNMLMDGLCNT------GQLDKALSYLEKLKLIGLCPTLVTYNILISGFS------KVG 331

Query: 489 AEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYN 548
              ++ EL++   D        TY  ++++ V + +  +A E+F  MK  G+ P+  TY 
Sbjct: 332 NSSVVSELVREMEDRGISPSKVTYTILMNTFVRSDDIEKAYEMFHLMKRIGLVPDQHTYG 391

Query: 549 IMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLE 608
           ++I    I      AS L   MV     P  + Y  +I       +  +AL  L+ +   
Sbjct: 392 VLIHGLCIKGNMVEASKLYKSMVEMHLQPNDVIYNTMINGYCKECNSYKALKFLEEMVKN 451

Query: 609 GIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFV 655
           G+  +V  Y + ++  C+ G+    + ++++M +  ++P  S C  V
Sbjct: 452 GVTPNVASYISTIQILCKDGKSIEAKRLLKEMTEAGLKPPESLCSKV 498



 Score = 69.7 bits (169), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 78/392 (19%), Positives = 166/392 (42%), Gaps = 40/392 (10%)

Query: 335 IRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEAL---LDQISR 391
           I+A   +  +  G E+L  M+   + P       L   C +  ++D A+ +   +D +  
Sbjct: 114 IKAFCENGNVSKGFELLAQMETMGVSPNVFIYTILIEACCRNGDIDQAKVMFSRMDDLGL 173

Query: 392 CTNPKPFSAFLAACDTMDKPERAIKIFAKMR-QKLRPDIRTYELLFSLF---GNVNAPYE 447
             N   ++  +         +   +++ KM+   + P++ TY  L + +   G ++  ++
Sbjct: 174 AANQYIYTIMINGFFKKGYKKDGFELYQKMKLVGVLPNLYTYNSLITEYCRDGKLSLAFK 233

Query: 448 EGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPL 507
              +F ++  +KR   +  +    NI    +  K  +    AEG++  + +   +  T  
Sbjct: 234 ---VFDEI--SKR--GVACNAVTYNILIGGLCRKGQVSK--AEGLLERMKRAHINPTTR- 283

Query: 508 GTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALV 567
              T+N ++  L    +  +A+   +++K  G+ P   TYNI+I   S +      S LV
Sbjct: 284 ---TFNMLMDGLCNTGQLDKALSYLEKLKLIGLCPTLVTYNILISGFSKVGNSSVVSELV 340

Query: 568 SMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEK 627
             M   G  P  +TYT L+   +   D ++A  +  L+   G+  D   Y  ++   C K
Sbjct: 341 REMEDRGISPSKVTYTILMNTFVRSDDIEKAYEMFHLMKRIGLVPDQHTYGVLIHGLCIK 400

Query: 628 GRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ-------------- 673
           G +     + + M +  +QP+    + + +GY        A++ L+              
Sbjct: 401 GNMVEASKLYKSMVEMHLQPNDVIYNTMINGYCKECNSYKALKFLEEMVKNGVTPNVASY 460

Query: 674 VLSMRMLCEEVSTLEEKRSDFEDLILAEDSEA 705
           + ++++LC++  ++E KR      +L E +EA
Sbjct: 461 ISTIQILCKDGKSIEAKR------LLKEMTEA 486



 Score = 39.3 bits (90), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 54/252 (21%), Positives = 105/252 (41%), Gaps = 31/252 (12%)

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
           M+   I    + + ++M  LC  G L++A + +  L +  G+ P L  YN  +   +K+ 
Sbjct: 273 MKRAHINPTTRTFNMLMDGLCNTGQLDKALSYLEKL-KLIGLCPTLVTYNILISGFSKVG 331

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRK 232
           +    +  +  M+ R +  ++VTYT L+   V   ++   +E            +F L K
Sbjct: 332 NSSVVSELVREMEDRGISPSKVTYTILMNTFVRSDDIEKAYE------------MFHLMK 379

Query: 233 FVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVL 292
            +     L   +  Y  L H   L + G    N     +L  S +++ +  N +      
Sbjct: 380 RIG----LVPDQHTYGVLIH--GLCIKG----NMVEASKLYKSMVEMHLQPNDVI----- 424

Query: 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
              ++ +I+   +  NS  A + + +M   G+ P+  +Y   I+ +  D        +LK
Sbjct: 425 ---YNTMINGYCKECNSYKALKFLEEMVKNGVTPNVASYISTIQILCKDGKSIEAKRLLK 481

Query: 353 IMQQNNLKPQDS 364
            M +  LKP +S
Sbjct: 482 EMTEAGLKPPES 493


>gi|356554658|ref|XP_003545661.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Glycine max]
          Length = 675

 Score = 82.4 bits (202), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 105/465 (22%), Positives = 185/465 (39%), Gaps = 33/465 (7%)

Query: 153 GIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAV 212
           GI P +  YN+ L +  K   +  A   L  M       N+VTY  L+        L   
Sbjct: 185 GIRPTVVTYNTMLDSFCKQGKVQEALQLLLQMQKMGCLPNDVTYNVLVNGLSHSGELEQA 244

Query: 213 HEIWEDYIK-HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRT---- 267
            E+ ++ ++    +S ++    +  +     L  A    + M++   +  L    T    
Sbjct: 245 KELIQEMLRLGLEVSAYTYDPLIRGYCEKGQLDEASRLGEEMLSRGAVPTLVTYNTIMYG 304

Query: 268 --SEGRLRSSR--LDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLG 323
               GR+  +R  LD+ +  N +P +     S++ +I+   R  N G A  L  +++  G
Sbjct: 305 LCKWGRVSDARKLLDVMVNKNLMPDL----VSYNTLIYGYTRLGNIGEAFLLFAELRFRG 360

Query: 324 LQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAE 383
           L PS  TY+  I  +     L   M +   M ++   P   T   L     K   L +A+
Sbjct: 361 LVPSVVTYNTLIDGLCRMGDLDVAMRLKDEMIKHGPDPDVFTFTILVRGFCKLGNLPMAK 420

Query: 384 ALLDQ-ISRCTNPKPFSAF--LAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLF 439
            L D+ ++R   P  F+    +     +  P +A  +  +M  +   PD+ TY +     
Sbjct: 421 ELFDEMLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGFPPDLITYNVF---- 476

Query: 440 GNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQY 499
             ++  ++ GN+    +  K+       M  N +   H++  +++ A    G +R+    
Sbjct: 477 --IDGLHKLGNLKEASELVKK-------MLYNGLVPDHVTYTSIIHAHLMAGHLRKARAV 527

Query: 500 FCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSI 556
           F +  +    P   TY  ++HS         A+  F +M   G+ PN  TYN +I+    
Sbjct: 528 FLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNALINGLCK 587

Query: 557 IRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNL 601
           +R    A    + M   G  P   TYT LI    + G + EAL L
Sbjct: 588 VRKMDQAYKFFTEMQAKGISPNKYTYTILINENCNLGHWQEALRL 632



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 84/355 (23%), Positives = 154/355 (43%), Gaps = 22/355 (6%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A++L+ +M  LGL+ S++TYD  IR       L     + + M      P   T  T+  
Sbjct: 244 AKELIQEMLRLGLEVSAYTYDPLIRGYCEKGQLDEASRLGEEMLSRGAVPTLVTYNTIMY 303

Query: 372 ECSKALELDLAEALLD-QISRCTNPK--PFSAFLAACDTMDKPERAIKIFAKMR-QKLRP 427
              K   +  A  LLD  +++   P    ++  +     +     A  +FA++R + L P
Sbjct: 304 GLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRFRGLVP 363

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKA- 486
            + TY  L      ++     G++    D A R+     +M ++       +   L++  
Sbjct: 364 SVVTYNTL------IDGLCRMGDL----DVAMRLKD---EMIKHGPDPDVFTFTILVRGF 410

Query: 487 --LGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNA 544
             LG   M +EL     +         Y T +   ++  +  +A  + ++M   G PP+ 
Sbjct: 411 CKLGNLPMAKELFDEMLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGFPPDL 470

Query: 545 ATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNL-LD 603
            TYN+ ID    +   K AS LV  M+ +G  P  +TYT++I   L  G   +A  + L+
Sbjct: 471 ITYNVFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARAVFLE 530

Query: 604 LVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
           ++S +GI   V+ Y  ++     +GR+ +      +MH+  V P+  T + + +G
Sbjct: 531 MLS-KGIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNALING 584



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 105/236 (44%), Gaps = 8/236 (3%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TYNT+L S  +  +   A+++  QM+  G  PN  TYN++++  S     + A  L+  M
Sbjct: 192 TYNTMLDSFCKQGKVQEALQLLLQMQKMGCLPNDVTYNVLVNGLSHSGELEQAKELIQEM 251

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           +R G      TY  LI+   + G  DEA  L + +   G    ++ YNTI+   C+ GR+
Sbjct: 252 LRLGLEVSAYTYDPLIRGYCEKGQLDEASRLGEEMLSRGAVPTLVTYNTIMYGLCKWGRV 311

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEV---STL 687
                +++ M    + PD  + + +  GY   G    A      L  R L   V   +TL
Sbjct: 312 SDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRFRGLVPSVVTYNTL 371

Query: 688 EEKRSDFEDLILAEDSEAESRILQFCEDSNENLAFTAALLQLRWCTIVGFPISWSL 743
            +      DL +A   + E  +++   D +    FT  +L   +C +   P++  L
Sbjct: 372 IDGLCRMGDLDVAMRLKDE--MIKHGPDPD---VFTFTILVRGFCKLGNLPMAKEL 422



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/241 (23%), Positives = 95/241 (39%), Gaps = 14/241 (5%)

Query: 425 LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI-NAIEMDMARNNIQHSHISMKNL 483
           +RP + TY  +   F       E   +  Q+     + N +  ++  N + HS       
Sbjct: 186 IRPTVVTYNTMLDSFCKQGKVQEALQLLLQMQKMGCLPNDVTYNVLVNGLSHS------- 238

Query: 484 LKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPN 543
               G     +ELIQ        +   TY+ ++    E  +   A  + ++M + G  P 
Sbjct: 239 ----GELEQAKELIQEMLRLGLEVSAYTYDPLIRGYCEKGQLDEASRLGEEMLSRGAVPT 294

Query: 544 AATYN-IMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL 602
             TYN IM   C   R    A  L+ +MV     P  ++Y  LI      G+  EA  L 
Sbjct: 295 LVTYNTIMYGLCKWGRV-SDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLF 353

Query: 603 DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNC 662
             +   G+   V+ YNT++   C  G +DV   + ++M ++   PD  T   +  G+   
Sbjct: 354 AELRFRGLVPSVVTYNTLIDGLCRMGDLDVAMRLKDEMIKHGPDPDVFTFTILVRGFCKL 413

Query: 663 G 663
           G
Sbjct: 414 G 414



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 72/366 (19%), Positives = 146/366 (39%), Gaps = 20/366 (5%)

Query: 305 RTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDS 364
           R  +  +A ++   M   G++P+  TY+  + +      ++  +++L  MQ+    P D 
Sbjct: 167 RDSSIDVAREVYNVMVECGIRPTVVTYNTMLDSFCKQGKVQEALQLLLQMQKMGCLPNDV 226

Query: 365 TIATLSVECSKALELDLAEALLDQISRC---TNPKPFSAFLAACDTMDKPERAIKIFAKM 421
           T   L    S + EL+ A+ L+ ++ R     +   +   +       + + A ++  +M
Sbjct: 227 TYNVLVNGLSHSGELEQAKELIQEMLRLGLEVSAYTYDPLIRGYCEKGQLDEASRLGEEM 286

Query: 422 RQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISM 480
             +   P + TY  +  ++G           + +V  A+++  +   M   N+    +S 
Sbjct: 287 LSRGAVPTLVTYNTI--MYGLCK--------WGRVSDARKLLDV---MVNKNLMPDLVSY 333

Query: 481 KNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKT 537
             L+      G I E    F + +     P   TYNT++  L    +   AM +  +M  
Sbjct: 334 NTLIYGYTRLGNIGEAFLLFAELRFRGLVPSVVTYNTLIDGLCRMGDLDVAMRLKDEMIK 393

Query: 538 CGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDE 597
            G  P+  T+ I++     +     A  L   M+  G  P    Y   I   L  GD  +
Sbjct: 394 HGPDPDVFTFTILVRGFCKLGNLPMAKELFDEMLNRGLQPDRFAYITRIVGELKLGDPSK 453

Query: 598 ALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFS 657
           A  + + +   G P D++ YN  +    + G +     ++++M  N + PD  T   +  
Sbjct: 454 AFGMQEEMLARGFPPDLITYNVFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIH 513

Query: 658 GYVNCG 663
            ++  G
Sbjct: 514 AHLMAG 519



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 57/262 (21%), Positives = 114/262 (43%), Gaps = 16/262 (6%)

Query: 412 ERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           E+ + +F KM  K + PD++    +  L  + +         S +D A+ +  +   M  
Sbjct: 136 EKCLLVFYKMVSKGMLPDLKNCNRVLRLLRDRD---------SSIDVAREVYNV---MVE 183

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHR 527
             I+ + ++   +L +   +G ++E +Q     +     P   TYN +++ L  + E  +
Sbjct: 184 CGIRPTVVTYNTMLDSFCKQGKVQEALQLLLQMQKMGCLPNDVTYNVLVNGLSHSGELEQ 243

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A E+ ++M   G+  +A TY+ +I           AS L   M+  G  P  +TY  ++ 
Sbjct: 244 AKELIQEMLRLGLEVSAYTYDPLIRGYCEKGQLDEASRLGEEMLSRGAVPTLVTYNTIMY 303

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
            L  +G   +A  LLD++  + +  D++ YNT++      G I     +  ++    + P
Sbjct: 304 GLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRFRGLVP 363

Query: 648 DPSTCHFVFSGYVNCGFHNSAM 669
              T + +  G    G  + AM
Sbjct: 364 SVVTYNTLIDGLCRMGDLDVAM 385


>gi|218198940|gb|EEC81367.1| hypothetical protein OsI_24568 [Oryza sativa Indica Group]
          Length = 1380

 Score = 82.4 bits (202), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 48/153 (31%), Positives = 76/153 (49%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TYNT++  L +      AM   ++M   G  P+  TYN +ID    I   + A+ L+   
Sbjct: 258 TYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDA 317

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           V  GF P  +TY +LI  L   GD + AL L +    +GI  D+++YN+++K  C +G I
Sbjct: 318 VFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLI 377

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
                ++ +M +    PD  T + V +G    G
Sbjct: 378 LHALQVMNEMAEEGCHPDIQTYNIVINGLCKMG 410



 Score = 76.6 bits (187), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 60/277 (21%), Positives = 120/277 (43%), Gaps = 17/277 (6%)

Query: 405 CDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAI 464
           C+    PE A+++   MR    PD+ TY  L       + P E  +   ++ +      +
Sbjct: 233 CEAGRLPE-AVRLVDGMRAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQ---GCL 288

Query: 465 EMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVE 521
             D   N I   +  +           M++E  +   D+      P   TY ++++ L  
Sbjct: 289 PDDFTYNTIIDGYCKIS----------MVQEATELLKDAVFKGFVPDQVTYCSLINGLCA 338

Query: 522 AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMT 581
             +  RA+E+F + +  GI P+   YN ++    +      A  +++ M  +G +P   T
Sbjct: 339 EGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQT 398

Query: 582 YTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMH 641
           Y  +I  L   G+  +A  +++   ++G   DV  +NT++   C++ ++D    ++E+M 
Sbjct: 399 YNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMW 458

Query: 642 QNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678
           +  + PD  T + V +G    G  N   E  Q + ++
Sbjct: 459 EYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILK 495



 Score = 66.6 bits (161), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 78/363 (21%), Positives = 143/363 (39%), Gaps = 31/363 (8%)

Query: 326 PSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL-SVECSKALELDLAEA 384
           P   TY+  IR +      +  M  L+ M      P D T  T+    C  ++  +  E 
Sbjct: 254 PDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATEL 313

Query: 385 LLDQISRCTNPK--PFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYE-------- 433
           L D + +   P    + + +         ERA+++F + + K ++PDI  Y         
Sbjct: 314 LKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCL 373

Query: 434 --LLFSLFGNVNAPYEEG----------------NMFSQVDSAKRINAIEMDMARNNIQH 475
             L+      +N   EEG                 M +  D+   +N   M     ++  
Sbjct: 374 QGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFT 433

Query: 476 SHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQM 535
            +  +    K L  +  + +L++   +      T TYN+VL+ L +A + +   E F++M
Sbjct: 434 FNTLIDGYCKRLKLDSAL-QLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEM 492

Query: 536 KTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDF 595
              G  PN  TYNI+I+        + AS ++  M ++G +P  +++  LI      GD 
Sbjct: 493 ILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDL 552

Query: 596 DEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFV 655
           + A  L   +  +G       +NT++     K  + + E I ++M     + D  T   +
Sbjct: 553 EGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVL 612

Query: 656 FSG 658
             G
Sbjct: 613 IDG 615


>gi|414868428|tpg|DAA46985.1| TPA: hypothetical protein ZEAMMB73_842284 [Zea mays]
          Length = 683

 Score = 82.4 bits (202), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 82/408 (20%), Positives = 168/408 (41%), Gaps = 29/408 (7%)

Query: 299 VIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNN 358
           ++ + GR   +  A ++ +Q+  LGL+PS+  Y+  I A V    +       + M  + 
Sbjct: 151 LVESWGRLGLAHYAHEVFVQVPRLGLRPSTAIYNAVIAASVRAGAVDAAYLRFQQMPADG 210

Query: 359 LKPQDSTIATLSVECSKALELDLAEALLDQISRC---TNPKPFSAFLAACDTMDKPERAI 415
            +P   T  TL     +   +D A  L+ Q+ R     N   ++  +       + E A+
Sbjct: 211 CRPDCFTYNTLVHGVCRRGIVDEALRLVKQMERAGIRPNVVTYTMLVDGFCNASRVEEAV 270

Query: 416 KIFAKMRQK-LRPDIRTYE-LLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMD-----M 468
            +  +M++K +     TY  L+   F  +        +   ++S   +++I        +
Sbjct: 271 CVLERMKEKGVSATEATYRSLVHGAFRCLEKERAYRMLSEWIESDPTLHSIAYHTLLYCL 330

Query: 469 ARNNIQHSHISMKNLLKALG-------------------AEGMIRELIQYFCDSKTPLGT 509
           ++N++    + +   +   G                       + EL+  F      LG 
Sbjct: 331 SKNDMDKEAVELAKKMSKRGYLLGSTTFSIVIPCAVKVLESSDLCELVDDFIKKGGNLGF 390

Query: 510 PTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSM 569
             Y  ++ S +  ++  +A + F QM + G+  +  +YNI+IDC +     + A   + +
Sbjct: 391 DMYIMIIKSFLRCKDISKANKYFSQMVSDGLLSSVESYNIVIDCFAKAGEVERALETIKV 450

Query: 570 MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
           M   GF P  +T+  LI   L  G+  +A   L +V   G+  DV+ + +++   C   +
Sbjct: 451 MQESGFSPNLVTFNTLINGYLKLGNVHDAKAFLKMVMEHGLMPDVITFTSLIDGLCHTHQ 510

Query: 630 IDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSM 677
           +D       +M +  V+P+  T + +  G  + G  + A+E L  + M
Sbjct: 511 LDDAFNCFSEMSEWGVRPNVQTYNVLIHGLCSAGHVSKAIELLNKMKM 558



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 82/371 (22%), Positives = 160/371 (43%), Gaps = 38/371 (10%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           ++++ ++H   R      A +L+ QM+  G++P+  TY   +    +   +   + VL+ 
Sbjct: 216 FTYNTLVHGVCRRGIVDEALRLVKQMERAGIRPNVVTYTMLVDGFCNASRVEEAVCVLER 275

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPK----PFSAFLAACDTMD 409
           M++  +   ++T  +L     + LE + A  +L +    ++P      +   L      D
Sbjct: 276 MKEKGVSATEATYRSLVHGAFRCLEKERAYRMLSEWIE-SDPTLHSIAYHTLLYCLSKND 334

Query: 410 KPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAP-----YEEGNMFSQVDS-AKRINA 463
             + A+++  KM +      R Y LL S   ++  P      E  ++   VD   K+   
Sbjct: 335 MDKEAVELAKKMSK------RGY-LLGSTTFSIVIPCAVKVLESSDLCELVDDFIKKGGN 387

Query: 464 IEMDMARNNIQHSHISMKNLLKA------LGAEGMIRELIQYFCDSKTPLGTPTYNTVLH 517
           +  DM    I+ S +  K++ KA      + ++G++  +              +YN V+ 
Sbjct: 388 LGFDMYIMIIK-SFLRCKDISKANKYFSQMVSDGLLSSV-------------ESYNIVID 433

Query: 518 SLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYP 577
              +A E  RA+E  K M+  G  PN  T+N +I+    +     A A + M++  G  P
Sbjct: 434 CFAKAGEVERALETIKVMQESGFSPNLVTFNTLINGYLKLGNVHDAKAFLKMVMEHGLMP 493

Query: 578 QTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFII 637
             +T+T+LI  L      D+A N    +S  G+  +V  YN ++   C  G +     ++
Sbjct: 494 DVITFTSLIDGLCHTHQLDDAFNCFSEMSEWGVRPNVQTYNVLIHGLCSAGHVSKAIELL 553

Query: 638 EQMHQNKVQPD 648
            +M  + + PD
Sbjct: 554 NKMKMDGITPD 564



 Score = 70.9 bits (172), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 120/552 (21%), Positives = 193/552 (34%), Gaps = 115/552 (20%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y  ++  +C+ G ++EA  L+  + ER GI P +  Y   +        +  A   L+ M
Sbjct: 218 YNTLVHGVCRRGIVDEALRLVKQM-ERAGIRPNVVTYTMLVDGFCNASRVEEAVCVLERM 276

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH-YSLSIFSLRKFVWSFTRLRDL 243
             + V   E TY  L+  A         + +  ++I+   +L   +    ++  ++    
Sbjct: 277 KEKGVSATEATYRSLVHGAFRCLEKERAYRMLSEWIESDPTLHSIAYHTLLYCLSKNDMD 336

Query: 244 KSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWS-----FSD 298
           K A E     +A  M  + Y+       L S+   I IP      +KVL  S       D
Sbjct: 337 KEAVE-----LAKKMSKRGYL-------LGSTTFSIVIPC----AVKVLESSDLCELVDD 380

Query: 299 VIHACG---------------RTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRG 343
            I   G               R ++   A +   QM S GL  S  +Y+  I        
Sbjct: 381 FIKKGGNLGFDMYIMIIKSFLRCKDISKANKYFSQMVSDGLLSSVESYNIVIDCFAKAGE 440

Query: 344 LRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLA 403
           +   +E +K+MQ++   P   T  TL     K   +  A+A L  +              
Sbjct: 441 VERALETIKVMQESGFSPNLVTFNTLINGYLKLGNVHDAKAFLKMV-------------- 486

Query: 404 ACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINA 463
                            M   L PD+ T+  L     + +   +  N FS++        
Sbjct: 487 -----------------MEHGLMPDVITFTSLIDGLCHTHQLDDAFNCFSEMSEWG---- 525

Query: 464 IEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQ 523
                 R N+Q                                    TYN ++H L  A 
Sbjct: 526 -----VRPNVQ------------------------------------TYNVLIHGLCSAG 544

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
              +A+E+  +MK  GI P+A ++N  I     +R  + A  L + M R G  P + TY 
Sbjct: 545 HVSKAIELLNKMKMDGITPDAYSFNAPILSFCRMRKIEKAQKLFNDMSRYGVSPDSYTYN 604

Query: 584 ALIKILLDYGDFDEALN-LLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642
           ALIK L D    DEA   +L + S+  I      Y  ++    + GR    EF +  +  
Sbjct: 605 ALIKALCDERRVDEAKEIILAMESISCIGTKQHTYWPVVGALTKMGRFRCNEFGLVPLKT 664

Query: 643 NKVQPDPSTCHF 654
              Q     C F
Sbjct: 665 YSEQFGHLVCFF 676



 Score = 47.4 bits (111), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 4/117 (3%)

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
           R G  P T  Y A+I   +  G  D A      +  +G   D   YNT++   C +G +D
Sbjct: 173 RLGLRPSTAIYNAVIAASVRAGAVDAAYLRFQQMPADGCRPDCFTYNTLVHGVCRRGIVD 232

Query: 632 VIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLE 688
               +++QM +  ++P+  T   +  G+ N    +   EA+ VL  RM  + VS  E
Sbjct: 233 EALRLVKQMERAGIRPNVVTYTMLVDGFCNA---SRVEEAVCVLE-RMKEKGVSATE 285


>gi|356497981|ref|XP_003517834.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 543

 Score = 82.4 bits (202), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 87/403 (21%), Positives = 157/403 (38%), Gaps = 26/403 (6%)

Query: 281 IPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVS 340
           + +   P +K     F  V     + ++   A  L+  M  +G++P+  T++  I  +  
Sbjct: 18  VTMKPFPCVKDFNLLFGIV----AKMKHYTTAISLIKHMSYIGVKPNVSTHNIVINCLCR 73

Query: 341 DRGLRNGMEVLKIMQQNNLKPQDSTIAT----LSVECSKALELDLAEALLDQISRCTNPK 396
                 G  VL +M +  ++P   T  T    L VE + A  +   + L D +   ++  
Sbjct: 74  LNHTVFGFSVLGLMFKIGVEPSIVTFTTIVNGLCVEGNVAQAIRFVDHLKD-MGYESDRY 132

Query: 397 PFSAFLAACDTMDKPERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQV 455
              A +     +     A+    KM  Q    D+  Y  +          +E  ++FSQ 
Sbjct: 133 TRGAIINGLCKVGHSSAALSYLKKMEEQNCNLDVTAYSAVVDGLCKDGMVFEALDLFSQ- 191

Query: 456 DSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TY 512
                       M    IQ +  +   L+  L      +E      +       P   T+
Sbjct: 192 ------------MTGKGIQPNLFTYNCLIHGLCNFDRWKEAAPLLANMMRKGIMPDVQTF 239

Query: 513 NTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVR 572
           N +    ++     RA  IF  M   GI  N  TYN +I    ++   K A  +  +M+R
Sbjct: 240 NVIAGRFLKTGMISRAKSIFSFMGHMGIEHNVVTYNSIIGAHCMLNQMKDAMEVFDLMIR 299

Query: 573 DGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDV 632
            G  P  +TY +LI    +  + ++A+  L  +   G+  DV+ ++T++   C+ G+   
Sbjct: 300 KGCLPNIVTYNSLIHGWCETKNMNKAMYFLGEMVNNGLDPDVVTWSTLIGGFCKAGKPVA 359

Query: 633 IEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
            + +   MH++   PD  TC  +  G   C FH+ AM   + L
Sbjct: 360 AKELFFVMHKHGQLPDLQTCAIILDGLFKCHFHSEAMSLFREL 402



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 69/387 (17%), Positives = 152/387 (39%), Gaps = 24/387 (6%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +F+ +++      N   A + +  ++ +G +   +T    I  +         +  LK M
Sbjct: 98  TFTTIVNGLCVEGNVAQAIRFVDHLKDMGYESDRYTRGAIINGLCKVGHSSAALSYLKKM 157

Query: 355 QQNNLKPQDSTIATLSVE--CSKALELDLAEALLDQISRCTNPKPFS--AFLAACDTMDK 410
           ++ N    D T  +  V+  C   +  +  +       +   P  F+    +      D+
Sbjct: 158 EEQNCN-LDVTAYSAVVDGLCKDGMVFEALDLFSQMTGKGIQPNLFTYNCLIHGLCNFDR 216

Query: 411 PERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
            + A  + A M R+ + PD++T+ ++                F +     R  +I   M 
Sbjct: 217 WKEAAPLLANMMRKGIMPDVQTFNVI-------------AGRFLKTGMISRAKSIFSFMG 263

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLG----TPTYNTVLHSLVEAQES 525
              I+H+ ++  +++ A      +++ ++ F D     G      TYN+++H   E +  
Sbjct: 264 HMGIEHNVVTYNSIIGAHCMLNQMKDAMEVF-DLMIRKGCLPNIVTYNSLIHGWCETKNM 322

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
           ++AM    +M   G+ P+  T++ +I          +A  L  +M + G  P   T   +
Sbjct: 323 NKAMYFLGEMVNNGLDPDVVTWSTLIGGFCKAGKPVAAKELFFVMHKHGQLPDLQTCAII 382

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           +  L       EA++L   +       D+++Y+ IL   C  G+++    +   +    V
Sbjct: 383 LDGLFKCHFHSEAMSLFRELEKMNSDLDIIIYSIILNGMCSSGKLNDALELFSYLSSKGV 442

Query: 646 QPDPSTCHFVFSGYVNCGFHNSAMEAL 672
           + D  T + + +G    G  + A + L
Sbjct: 443 KIDVVTYNIMINGLCKEGLLDDAEDLL 469



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/165 (21%), Positives = 70/165 (42%), Gaps = 3/165 (1%)

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           +N +   + + +    A+ + K M   G+ PN +T+NI+I+C   +       +++ +M 
Sbjct: 29  FNLLFGIVAKMKHYTTAISLIKHMSYIGVKPNVSTHNIVINCLCRLNHTVFGFSVLGLMF 88

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
           + G  P  +T+T ++  L   G+  +A+  +D +   G   D      I+   C+ G   
Sbjct: 89  KIGVEPSIVTFTTIVNGLCVEGNVAQAIRFVDHLKDMGYESDRYTRGAIINGLCKVGHSS 148

Query: 632 VIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
                +++M +     D +    V  G    G      EAL + S
Sbjct: 149 AALSYLKKMEEQNCNLDVTAYSAVVDGLCKDGM---VFEALDLFS 190



 Score = 47.4 bits (111), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 68/312 (21%), Positives = 127/312 (40%), Gaps = 37/312 (11%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A  L  QM   G+QP+  TY+  I  + +    +    +L  M +  + P   T   ++ 
Sbjct: 185 ALDLFSQMTGKGIQPNLFTYNCLIHGLCNFDRWKEAAPLLANMMRKGIMPDVQTFNVIAG 244

Query: 372 ECSKALELDLAEALLDQISRCT---NPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLRP 427
              K   +  A+++   +       N   +++ + A   +++ + A+++F  M R+   P
Sbjct: 245 RFLKTGMISRAKSIFSFMGHMGIEHNVVTYNSIIGAHCMLNQMKDAMEVFDLMIRKGCLP 304

Query: 428 DIRTYELLFSLF---GNVN-APYEEGNMFSQ----------------VDSAKRINAIEMD 467
           +I TY  L   +    N+N A Y  G M +                   + K + A E+ 
Sbjct: 305 NIVTYNSLIHGWCETKNMNKAMYFLGEMVNNGLDPDVVTWSTLIGGFCKAGKPVAAKELF 364

Query: 468 MARN------NIQHSHISMKNLLKA-LGAEGM--IRELIQYFCDSKTPLGTPTYNTVLHS 518
              +      ++Q   I +  L K    +E M   REL +   D    L    Y+ +L+ 
Sbjct: 365 FVMHKHGQLPDLQTCAIILDGLFKCHFHSEAMSLFRELEKMNSD----LDIIIYSIILNG 420

Query: 519 LVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQ 578
           +  + + + A+E+F  + + G+  +  TYNIMI+          A  L+  M  +G  P 
Sbjct: 421 MCSSGKLNDALELFSYLSSKGVKIDVVTYNIMINGLCKEGLLDDAEDLLMKMEENGCPPD 480

Query: 579 TMTYTALIKILL 590
             TY   ++ LL
Sbjct: 481 ECTYNVFVQGLL 492


>gi|414868427|tpg|DAA46984.1| TPA: hypothetical protein ZEAMMB73_842284 [Zea mays]
          Length = 674

 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 82/408 (20%), Positives = 168/408 (41%), Gaps = 29/408 (7%)

Query: 299 VIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNN 358
           ++ + GR   +  A ++ +Q+  LGL+PS+  Y+  I A V    +       + M  + 
Sbjct: 151 LVESWGRLGLAHYAHEVFVQVPRLGLRPSTAIYNAVIAASVRAGAVDAAYLRFQQMPADG 210

Query: 359 LKPQDSTIATLSVECSKALELDLAEALLDQISRC---TNPKPFSAFLAACDTMDKPERAI 415
            +P   T  TL     +   +D A  L+ Q+ R     N   ++  +       + E A+
Sbjct: 211 CRPDCFTYNTLVHGVCRRGIVDEALRLVKQMERAGIRPNVVTYTMLVDGFCNASRVEEAV 270

Query: 416 KIFAKMRQK-LRPDIRTYE-LLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMD-----M 468
            +  +M++K +     TY  L+   F  +        +   ++S   +++I        +
Sbjct: 271 CVLERMKEKGVSATEATYRSLVHGAFRCLEKERAYRMLSEWIESDPTLHSIAYHTLLYCL 330

Query: 469 ARNNIQHSHISMKNLLKALG-------------------AEGMIRELIQYFCDSKTPLGT 509
           ++N++    + +   +   G                       + EL+  F      LG 
Sbjct: 331 SKNDMDKEAVELAKKMSKRGYLLGSTTFSIVIPCAVKVLESSDLCELVDDFIKKGGNLGF 390

Query: 510 PTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSM 569
             Y  ++ S +  ++  +A + F QM + G+  +  +YNI+IDC +     + A   + +
Sbjct: 391 DMYIMIIKSFLRCKDISKANKYFSQMVSDGLLSSVESYNIVIDCFAKAGEVERALETIKV 450

Query: 570 MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
           M   GF P  +T+  LI   L  G+  +A   L +V   G+  DV+ + +++   C   +
Sbjct: 451 MQESGFSPNLVTFNTLINGYLKLGNVHDAKAFLKMVMEHGLMPDVITFTSLIDGLCHTHQ 510

Query: 630 IDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSM 677
           +D       +M +  V+P+  T + +  G  + G  + A+E L  + M
Sbjct: 511 LDDAFNCFSEMSEWGVRPNVQTYNVLIHGLCSAGHVSKAIELLNKMKM 558



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 82/371 (22%), Positives = 160/371 (43%), Gaps = 38/371 (10%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           ++++ ++H   R      A +L+ QM+  G++P+  TY   +    +   +   + VL+ 
Sbjct: 216 FTYNTLVHGVCRRGIVDEALRLVKQMERAGIRPNVVTYTMLVDGFCNASRVEEAVCVLER 275

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPK----PFSAFLAACDTMD 409
           M++  +   ++T  +L     + LE + A  +L +    ++P      +   L      D
Sbjct: 276 MKEKGVSATEATYRSLVHGAFRCLEKERAYRMLSEWIE-SDPTLHSIAYHTLLYCLSKND 334

Query: 410 KPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAP-----YEEGNMFSQVDS-AKRINA 463
             + A+++  KM +      R Y LL S   ++  P      E  ++   VD   K+   
Sbjct: 335 MDKEAVELAKKMSK------RGY-LLGSTTFSIVIPCAVKVLESSDLCELVDDFIKKGGN 387

Query: 464 IEMDMARNNIQHSHISMKNLLKA------LGAEGMIRELIQYFCDSKTPLGTPTYNTVLH 517
           +  DM    I+ S +  K++ KA      + ++G++  +              +YN V+ 
Sbjct: 388 LGFDMYIMIIK-SFLRCKDISKANKYFSQMVSDGLLSSV-------------ESYNIVID 433

Query: 518 SLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYP 577
              +A E  RA+E  K M+  G  PN  T+N +I+    +     A A + M++  G  P
Sbjct: 434 CFAKAGEVERALETIKVMQESGFSPNLVTFNTLINGYLKLGNVHDAKAFLKMVMEHGLMP 493

Query: 578 QTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFII 637
             +T+T+LI  L      D+A N    +S  G+  +V  YN ++   C  G +     ++
Sbjct: 494 DVITFTSLIDGLCHTHQLDDAFNCFSEMSEWGVRPNVQTYNVLIHGLCSAGHVSKAIELL 553

Query: 638 EQMHQNKVQPD 648
            +M  + + PD
Sbjct: 554 NKMKMDGITPD 564



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 116/544 (21%), Positives = 191/544 (35%), Gaps = 115/544 (21%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y  ++  +C+ G ++EA  L+  + ER GI P +  Y   +        +  A   L+ M
Sbjct: 218 YNTLVHGVCRRGIVDEALRLVKQM-ERAGIRPNVVTYTMLVDGFCNASRVEEAVCVLERM 276

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH-YSLSIFSLRKFVWSFTRLRDL 243
             + V   E TY  L+  A         + +  ++I+   +L   +    ++  ++    
Sbjct: 277 KEKGVSATEATYRSLVHGAFRCLEKERAYRMLSEWIESDPTLHSIAYHTLLYCLSKNDMD 336

Query: 244 KSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWS-----FSD 298
           K A E     +A  M  + Y+       L S+   I IP      +KVL  S       D
Sbjct: 337 KEAVE-----LAKKMSKRGYL-------LGSTTFSIVIPC----AVKVLESSDLCELVDD 380

Query: 299 VIHACG---------------RTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRG 343
            I   G               R ++   A +   QM S GL  S  +Y+  I        
Sbjct: 381 FIKKGGNLGFDMYIMIIKSFLRCKDISKANKYFSQMVSDGLLSSVESYNIVIDCFAKAGE 440

Query: 344 LRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLA 403
           +   +E +K+MQ++   P   T  T                L++   +  N     AFL 
Sbjct: 441 VERALETIKVMQESGFSPNLVTFNT----------------LINGYLKLGNVHDAKAFLK 484

Query: 404 ACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINA 463
                            M   L PD+ T+  L     + +   +  N FS++        
Sbjct: 485 MV---------------MEHGLMPDVITFTSLIDGLCHTHQLDDAFNCFSEMSEWG---- 525

Query: 464 IEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQ 523
                 R N+Q                                    TYN ++H L  A 
Sbjct: 526 -----VRPNVQ------------------------------------TYNVLIHGLCSAG 544

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
              +A+E+  +MK  GI P+A ++N  I     +R  + A  L + M R G  P + TY 
Sbjct: 545 HVSKAIELLNKMKMDGITPDAYSFNAPILSFCRMRKIEKAQKLFNDMSRYGVSPDSYTYN 604

Query: 584 ALIKILLDYGDFDEALN-LLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642
           ALIK L D    DEA   +L + S+  I      Y  ++    + GR       + ++H+
Sbjct: 605 ALIKALCDERRVDEAKEIILAMESISCIGTKQHTYWPVVGALTKMGRFSEAGMFMNKLHR 664

Query: 643 NKVQ 646
               
Sbjct: 665 KNAH 668



 Score = 47.8 bits (112), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 4/117 (3%)

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
           R G  P T  Y A+I   +  G  D A      +  +G   D   YNT++   C +G +D
Sbjct: 173 RLGLRPSTAIYNAVIAASVRAGAVDAAYLRFQQMPADGCRPDCFTYNTLVHGVCRRGIVD 232

Query: 632 VIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLE 688
               +++QM +  ++P+  T   +  G+ N    +   EA+ VL  RM  + VS  E
Sbjct: 233 EALRLVKQMERAGIRPNVVTYTMLVDGFCNA---SRVEEAVCVLE-RMKEKGVSATE 285


>gi|357494043|ref|XP_003617310.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518645|gb|AET00269.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 716

 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 109/513 (21%), Positives = 204/513 (39%), Gaps = 60/513 (11%)

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
           MEEK +  +   Y  ++ A C+ G + EA  L+  +  + G+ P L  YN+ +    K  
Sbjct: 250 MEEKGVYADLVTYNTLVNAYCRRGLVSEAFGLVDCMAGK-GLKPGLFTYNALINGLCKEG 308

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSL-SIFSLR 231
           S   A   LD M    +  N  T+  +L  +  ++++     ++ + ++   +  + S  
Sbjct: 309 SYERAKRVLDEMLGVGLCPNAATFNPMLVESCRKEDVWEAERVFNEMLQRGVVPDLISFS 368

Query: 232 KFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRT-SEGRLRSSRLDIPIPL-NALP-- 287
             V  F+R  +L  A    + M  + ++    I      G  R+  +   + + N +   
Sbjct: 369 SIVGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTILINGYCRNDDVSGALKMRNEMVER 428

Query: 288 --VMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLR 345
             VM V+  +++ +++   R +    A++L  +M   G+ P  +T    I     D  + 
Sbjct: 429 GCVMDVV--TYNTLLNGLCRGKMLDDADELFKEMVERGVFPDFYTLTTLIHGYCKDGNMT 486

Query: 346 NGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEAL-LDQISRCTNPK--PFSAFL 402
             + + + M   +LKP   T  TL     K  E++ A+ L  D ISR   P    FS  +
Sbjct: 487 KALSLFETMTLRSLKPDVVTYNTLMDGFCKVGEMEKAKELWYDMISREIFPSYISFSILI 546

Query: 403 AACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI 461
               ++     A +++ +M++K ++P + T                              
Sbjct: 547 NGFCSLGLVSEAFRLWDEMKEKGIKPTLVTC----------------------------- 577

Query: 462 NAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVE 521
                    N I   ++   NL KA        + +        P    TYNT+++S V+
Sbjct: 578 ---------NTIIKGYLRAGNLSKA-------NDFLNTMISEGVPPDCITYNTLINSFVK 621

Query: 522 AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMT 581
            +   RA  +   M+  G+ PN  TYN ++   S     + A  ++  M+  G  P   T
Sbjct: 622 EENFDRAFFLINNMEERGLLPNLVTYNAILGGFSRHGRMQEAEMVLHKMIDKGINPDKST 681

Query: 582 YTALIKILLDYGDFDEALNLLDLVSLEG-IPHD 613
           YT+LI   +   +  EA  + D +   G +P D
Sbjct: 682 YTSLINGYVSKDNMKEAFRVHDEMLQRGFVPDD 714



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 104/540 (19%), Positives = 194/540 (35%), Gaps = 82/540 (15%)

Query: 127 LMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDS 186
           +M+ ALCK G L+     +  + E+ G+Y  L  YN+ + A  +   +  A   +D M  
Sbjct: 229 IMVNALCKDGKLDNVGVYLSEMEEK-GVYADLVTYNTLVNAYCRRGLVSEAFGLVDCMAG 287

Query: 187 RMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK-HYSLSIFSLRKFVWSFTRLRDLKS 245
           + +     TY  L+     + +      + ++ +      +  +    +    R  D+  
Sbjct: 288 KGLKPGLFTYNALINGLCKEGSYERAKRVLDEMLGVGLCPNAATFNPMLVESCRKEDVWE 347

Query: 246 AYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGR 305
           A      M+   ++  L                                SFS ++    R
Sbjct: 348 AERVFNEMLQRGVVPDLI-------------------------------SFSSIVGVFSR 376

Query: 306 TQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDST 365
               G A     +M+ +GL P +  Y   I     +  +   +++   M +        T
Sbjct: 377 NGELGRALAYFEKMKGVGLVPDTVIYTILINGYCRNDDVSGALKMRNEMVERGCVMDVVT 436

Query: 366 IATLSVECSKALELDLAEALLDQ-ISRCTNPKPFS--AFLAACDTMDKPERAIKIFAKMR 422
             TL     +   LD A+ L  + + R   P  ++    +          +A+ +F  M 
Sbjct: 437 YNTLLNGLCRGKMLDDADELFKEMVERGVFPDFYTLTTLIHGYCKDGNMTKALSLFETMT 496

Query: 423 -QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMK 481
            + L+PD+ TY  L              + F +V   ++   +  DM    I  S+IS  
Sbjct: 497 LRSLKPDVVTYNTLM-------------DGFCKVGEMEKAKELWYDMISREIFPSYISFS 543

Query: 482 NLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIP 541
            L+    + G++ E                                A  ++ +MK  GI 
Sbjct: 544 ILINGFCSLGLVSE--------------------------------AFRLWDEMKEKGIK 571

Query: 542 PNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNL 601
           P   T N +I           A+  ++ M+ +G  P  +TY  LI   +   +FD A  L
Sbjct: 572 PTLVTCNTIIKGYLRAGNLSKANDFLNTMISEGVPPDCITYNTLINSFVKEENFDRAFFL 631

Query: 602 LDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVN 661
           ++ +   G+  +++ YN IL      GR+   E ++ +M    + PD ST   + +GYV+
Sbjct: 632 INNMEERGLLPNLVTYNAILGGFSRHGRMQEAEMVLHKMIDKGINPDKSTYTSLINGYVS 691



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 83/399 (20%), Positives = 147/399 (36%), Gaps = 58/399 (14%)

Query: 319 MQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALE 378
           M   GL+P   TY+  I  +  +        VL  M    L P  +T   + VE  +  +
Sbjct: 285 MAGKGLKPGLFTYNALINGLCKEGSYERAKRVLDEMLGVGLCPNAATFNPMLVESCRKED 344

Query: 379 LDLAEALLDQ-ISRCTNPK--PFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYEL 434
           +  AE + ++ + R   P    FS+ +       +  RA+  F KM+   L PD   Y +
Sbjct: 345 VWEAERVFNEMLQRGVVPDLISFSSIVGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTI 404

Query: 435 LFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIR 494
           L              N + + D       +  +M         ++   LL  L    M+ 
Sbjct: 405 LI-------------NGYCRNDDVSGALKMRNEMVERGCVMDVVTYNTLLNGLCRGKMLD 451

Query: 495 ELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI 551
           +  + F +       P   T  T++H   +     +A+ +F+ M    + P+  TYN ++
Sbjct: 452 DADELFKEMVERGVFPDFYTLTTLIHGYCKDGNMTKALSLFETMTLRSLKPDVVTYNTLM 511

Query: 552 DC-CSIIRCFKSASALVSMMVRD----------------------------------GFY 576
           D  C +    K+      M+ R+                                  G  
Sbjct: 512 DGFCKVGEMEKAKELWYDMISREIFPSYISFSILINGFCSLGLVSEAFRLWDEMKEKGIK 571

Query: 577 PQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFI 636
           P  +T   +IK  L  G+  +A + L+ +  EG+P D + YNT++    ++   D   F+
Sbjct: 572 PTLVTCNTIIKGYLRAGNLSKANDFLNTMISEGVPPDCITYNTLINSFVKEENFDRAFFL 631

Query: 637 IEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
           I  M +  + P+  T + +  G+     H    EA  VL
Sbjct: 632 INNMEERGLLPNLVTYNAILGGFSR---HGRMQEAEMVL 667



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/258 (23%), Positives = 101/258 (39%), Gaps = 38/258 (14%)

Query: 467 DMARNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQ 523
           +M    +    ++   L+ A    G++ E   L+          G  TYN +++ L +  
Sbjct: 249 EMEEKGVYADLVTYNTLVNAYCRRGLVSEAFGLVDCMAGKGLKPGLFTYNALINGLCKEG 308

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMI-------DCCSIIRCFK------------SAS 564
              RA  +  +M   G+ PNAAT+N M+       D     R F             S S
Sbjct: 309 SYERAKRVLDEMLGVGLCPNAATFNPMLVESCRKEDVWEAERVFNEMLQRGVVPDLISFS 368

Query: 565 ALVSMMVRDG----------------FYPQTMTYTALIKILLDYGDFDEALNLLDLVSLE 608
           ++V +  R+G                  P T+ YT LI       D   AL + + +   
Sbjct: 369 SIVGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTILINGYCRNDDVSGALKMRNEMVER 428

Query: 609 GIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSA 668
           G   DV+ YNT+L   C    +D  + + ++M +  V PD  T   +  GY   G    A
Sbjct: 429 GCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVERGVFPDFYTLTTLIHGYCKDGNMTKA 488

Query: 669 MEALQVLSMRMLCEEVST 686
           +   + +++R L  +V T
Sbjct: 489 LSLFETMTLRSLKPDVVT 506


>gi|449527556|ref|XP_004170776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Cucumis sativus]
          Length = 665

 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 86/369 (23%), Positives = 156/369 (42%), Gaps = 54/369 (14%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ +I    +T   G A QL+ +M    + P   TY+  +R +     L+  MEVL   
Sbjct: 182 TYNVLISGYCKTGEIGSALQLLDRMS---VSPDVVTYNTILRTLCDSGKLKEAMEVLDRQ 238

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERA 414
            Q    P   T   L       +E    E+ + Q                         A
Sbjct: 239 MQRECYPDVITYTIL-------IEATCKESGVGQ-------------------------A 266

Query: 415 IKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI--NAIEMDMARN 471
           +K+  +MR K  +PD+ TY +L      +N   +EG    ++D A R   +        N
Sbjct: 267 MKLLDEMRDKGCKPDVVTYNVL------INGICKEG----RLDEAIRFLNHMPSYGCQPN 316

Query: 472 NIQHSHI--SMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAM 529
            I H+ I  SM +  + + AE  + E+I+  C         T+N +++ L       RA+
Sbjct: 317 VITHNIILRSMCSTGRWMDAEKFLAEMIRKGCSPSVV----TFNILINFLCRKGLIGRAI 372

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
           ++ ++M   G  PN+ +YN ++      +  + A   + +MV  G YP  +TY  L+  L
Sbjct: 373 DVLEKMPQHGCTPNSLSYNPLLHALCKDKKMERAIEYLDIMVSRGCYPDIVTYNTLLTAL 432

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649
              G  D A+ +L+ +  +G    ++ YNT++    + G+ D    ++++M    ++PD 
Sbjct: 433 CKDGKVDVAVEILNQLGSKGCSPVLITYNTVIDGLSKVGKTDDAIKLLDEMKGKGLKPDI 492

Query: 650 STCHFVFSG 658
            T   +  G
Sbjct: 493 ITYSTLVGG 501



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 81/358 (22%), Positives = 150/358 (41%), Gaps = 19/358 (5%)

Query: 334 FIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT 393
            IR +           V++I++ +   P   T   L     K  E+  A  LLD++S   
Sbjct: 151 LIRGLCKTGKTWKATRVMEILEDSGAVPDVITYNVLISGYCKTGEIGSALQLLDRMSVSP 210

Query: 394 NPKPFSAFLAA-CDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMF 452
           +   ++  L   CD+    E    +  +M+++  PD+ TY +L      + A  +E    
Sbjct: 211 DVVTYNTILRTLCDSGKLKEAMEVLDRQMQRECYPDVITYTIL------IEATCKE---- 260

Query: 453 SQVDSAKRINAIEMDMARNNIQHSHISMKN-LLKALGAEGMIRELIQYFCDSKTPLGTP- 510
           S V  A ++    +D  R+      +   N L+  +  EG + E I++     +    P 
Sbjct: 261 SGVGQAMKL----LDEMRDKGCKPDVVTYNVLINGICKEGRLDEAIRFLNHMPSYGCQPN 316

Query: 511 --TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVS 568
             T+N +L S+        A +   +M   G  P+  T+NI+I+          A  ++ 
Sbjct: 317 VITHNIILRSMCSTGRWMDAEKFLAEMIRKGCSPSVVTFNILINFLCRKGLIGRAIDVLE 376

Query: 569 MMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
            M + G  P +++Y  L+  L      + A+  LD++   G   D++ YNT+L   C+ G
Sbjct: 377 KMPQHGCTPNSLSYNPLLHALCKDKKMERAIEYLDIMVSRGCYPDIVTYNTLLTALCKDG 436

Query: 629 RIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           ++DV   I+ Q+      P   T + V  G    G  + A++ L  +  + L  ++ T
Sbjct: 437 KVDVAVEILNQLGSKGCSPVLITYNTVIDGLSKVGKTDDAIKLLDEMKGKGLKPDIIT 494



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 93/373 (24%), Positives = 154/373 (41%), Gaps = 32/373 (8%)

Query: 326 PSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEAL 385
           P   TY   I A   + G+   M++L  M+    KP   T   L     K   LD A   
Sbjct: 245 PDVITYTILIEATCKESGVGQAMKLLDEMRDKGCKPDVVTYNVLINGICKEGRLDEAIRF 304

Query: 386 LDQI-SRCTNPKPFSAFL---AACDT---MDKPERAIKIFAKM-RQKLRPDIRTYELLFS 437
           L+ + S    P   +  +   + C T   MD    A K  A+M R+   P + T+ +L  
Sbjct: 305 LNHMPSYGCQPNVITHNIILRSMCSTGRWMD----AEKFLAEMIRKGCSPSVVTFNIL-- 358

Query: 438 LFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELI 497
               +N    +G +   +D  ++       M ++    + +S   LL AL  +  +   I
Sbjct: 359 ----INFLCRKGLIGRAIDVLEK-------MPQHGCTPNSLSYNPLLHALCKDKKMERAI 407

Query: 498 QYFCDSKTPLG----TPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC 553
           +Y  D     G      TYNT+L +L +  +   A+EI  Q+ + G  P   TYN +ID 
Sbjct: 408 EYL-DIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLGSKGCSPVLITYNTVIDG 466

Query: 554 CSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHD 613
            S +     A  L+  M   G  P  +TY+ L+  L   G  DEA+     +   G+  +
Sbjct: 467 LSKVGKTDDAIKLLDEMKGKGLKPDIITYSTLVGGLSREGKVDEAIAFFHDLEEMGVKPN 526

Query: 614 VLLYNTILKKACE-KGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEAL 672
            + YN+I+   C+ +  +  I+F +  M     +P  ++   +  G    G    A+E L
Sbjct: 527 AITYNSIMLGLCKARQTVRAIDF-LAYMVARGCKPTETSYMILIEGLAYEGLAKEALELL 585

Query: 673 QVLSMRMLCEEVS 685
             L  R + ++ S
Sbjct: 586 NELCSRGVVKKSS 598



 Score = 40.0 bits (92), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 3/103 (2%)

Query: 570 MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
           MV  G  P  +  T+LI+ L   G   +A  +++++   G   DV+ YN ++   C+ G 
Sbjct: 136 MVCRGDIPDIIACTSLIRGLCKTGKTWKATRVMEILEDSGAVPDVITYNVLISGYCKTGE 195

Query: 630 IDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEAL 672
           I     ++++M    V PD  T + +     + G    AME L
Sbjct: 196 IGSALQLLDRM---SVSPDVVTYNTILRTLCDSGKLKEAMEVL 235


>gi|222636287|gb|EEE66419.1| hypothetical protein OsJ_22769 [Oryza sativa Japonica Group]
          Length = 1393

 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/153 (31%), Positives = 76/153 (49%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TYNT++  L +      AM   ++M   G  P+  TYN +ID    I   + A+ L+   
Sbjct: 257 TYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDA 316

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           V  GF P  +TY +LI  L   GD + AL L +    +GI  D+++YN+++K  C +G I
Sbjct: 317 VFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLI 376

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
                ++ +M +    PD  T + V +G    G
Sbjct: 377 LHALQVMNEMAEEGCHPDIQTYNIVINGLCKMG 409



 Score = 76.6 bits (187), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 60/277 (21%), Positives = 120/277 (43%), Gaps = 17/277 (6%)

Query: 405 CDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAI 464
           C+    PE A+++   MR    PD+ TY  L       + P E  +   ++ +      +
Sbjct: 232 CEAGRLPE-AVRLVDGMRAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQ---GCL 287

Query: 465 EMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVE 521
             D   N I   +  +           M++E  +   D+      P   TY ++++ L  
Sbjct: 288 PDDFTYNTIIDGYCKIS----------MVQEATELLKDAVFKGFVPDQVTYCSLINGLCA 337

Query: 522 AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMT 581
             +  RA+E+F + +  GI P+   YN ++    +      A  +++ M  +G +P   T
Sbjct: 338 EGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQT 397

Query: 582 YTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMH 641
           Y  +I  L   G+  +A  +++   ++G   DV  +NT++   C++ ++D    ++E+M 
Sbjct: 398 YNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMW 457

Query: 642 QNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678
           +  + PD  T + V +G    G  N   E  Q + ++
Sbjct: 458 EYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILK 494



 Score = 66.2 bits (160), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 78/363 (21%), Positives = 143/363 (39%), Gaps = 31/363 (8%)

Query: 326 PSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL-SVECSKALELDLAEA 384
           P   TY+  IR +      +  M  L+ M      P D T  T+    C  ++  +  E 
Sbjct: 253 PDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATEL 312

Query: 385 LLDQISRCTNPK--PFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYE-------- 433
           L D + +   P    + + +         ERA+++F + + K ++PDI  Y         
Sbjct: 313 LKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCL 372

Query: 434 --LLFSLFGNVNAPYEEG----------------NMFSQVDSAKRINAIEMDMARNNIQH 475
             L+      +N   EEG                 M +  D+   +N   M     ++  
Sbjct: 373 QGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFT 432

Query: 476 SHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQM 535
            +  +    K L  +  + +L++   +      T TYN+VL+ L +A + +   E F++M
Sbjct: 433 FNTLIDGYCKRLKLDSAL-QLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEM 491

Query: 536 KTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDF 595
              G  PN  TYNI+I+        + AS ++  M ++G +P  +++  LI      GD 
Sbjct: 492 ILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDL 551

Query: 596 DEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFV 655
           + A  L   +  +G       +NT++     K  + + E I ++M     + D  T   +
Sbjct: 552 EGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVL 611

Query: 656 FSG 658
             G
Sbjct: 612 IDG 614


>gi|449432854|ref|XP_004134213.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Cucumis sativus]
          Length = 904

 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 90/418 (21%), Positives = 171/418 (40%), Gaps = 56/418 (13%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++++I A   +++S     L  QMQ LG   + H +   IR    +  +   + +L  M
Sbjct: 202 AYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVFAREGRVDAALSLLDEM 261

Query: 355 QQNNLKPQDSTIATLSVEC-SKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDK 410
           + N+L+P D  +  + ++C  KA ++D+A     ++       +   +++ +      D+
Sbjct: 262 KSNSLEP-DVVLYNVCIDCFGKAGKVDMAWKFFHEMKANGLVLDDVTYTSMIGVLCKADR 320

Query: 411 PERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
              A+++F  M Q K  P    Y  +   +G +   +E+   +S ++  +R   I     
Sbjct: 321 LNEAVELFEHMDQNKQVPCAYAYNTMIMGYG-MAGKFEDA--YSLLERQRRKGCIP---- 373

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPL--GTPTYNTVLHSLVEAQESHR 527
                 S +S   +L  LG +G + E ++ F + K        TYN ++  L +A +   
Sbjct: 374 ------SVVSYNCILSCLGRKGQVDEALKKFEEMKKDAIPNLSTYNIMIDMLCKAGKLET 427

Query: 528 AMEIFKQMKTCGIPPNAATYNIMID----------CCSIIR------CFKSASALVSMMV 571
           A+ +   MK  G+ PN  T NIM+D           CSI        C   A    S++ 
Sbjct: 428 ALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIE 487

Query: 572 RDGFY-------------------PQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPH 612
             G +                   P  + YT+LI+     G  ++   + + +   G   
Sbjct: 488 GLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSP 547

Query: 613 DVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAME 670
           D+LL NT +    + G I+    + +++      PD  +   +  G V  GF + A E
Sbjct: 548 DLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYE 605



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 106/535 (19%), Positives = 204/535 (38%), Gaps = 74/535 (13%)

Query: 195 TYTELLKLAVWQKNLSAVHEIWEDY-IKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHM 253
            Y  LL +    +  + + +I E+  I  +  S  +  + V SF + R L+ A+  +Q M
Sbjct: 132 AYNSLLMVMARTRKFNCLEQILEEMSIAGFGPSNNTCIEIVLSFIKSRKLREAFTFIQTM 191

Query: 254 VALA----------MMGKLYINRTSEGRL--------------------------RSSRL 277
             L           ++G L  +R S+  L                          R  R+
Sbjct: 192 RKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVFAREGRV 251

Query: 278 DIPIPL------NALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTY 331
           D  + L      N+L    VL   ++  I   G+     +A +   +M++ GL     TY
Sbjct: 252 DAALSLLDEMKSNSLEPDVVL---YNVCIDCFGKAGKVDMAWKFFHEMKANGLVLDDVTY 308

Query: 332 DGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR 391
              I  +     L   +E+ + M QN   P      T+ +    A + + A +LL++  R
Sbjct: 309 TSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLERQRR 368

Query: 392 ---CTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGN------- 441
                +   ++  L+      + + A+K F +M++   P++ TY ++  +          
Sbjct: 369 KGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDAIPNLSTYNIMIDMLCKAGKLETA 428

Query: 442 --VNAPYEEGNMFSQVDS----------AKRIN---AIEMDMARNNIQHSHISMKNLLKA 486
             V    ++  +F  V +          A+R++   +I   +     +   ++  +L++ 
Sbjct: 429 LVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEG 488

Query: 487 LGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPN 543
           LG  G + E   L +   D+        Y +++ +  +        +I+ +M   G  P+
Sbjct: 489 LGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPD 548

Query: 544 AATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLD 603
               N  +DC       +   AL   +   GF P   +YT LI  L+  G   EA  L  
Sbjct: 549 LLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFY 608

Query: 604 LVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
            +  +G   D   YNT++   C+ G+++    ++E+M     +P   T   V  G
Sbjct: 609 TMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDG 663



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 82/405 (20%), Positives = 159/405 (39%), Gaps = 40/405 (9%)

Query: 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
           R +++ ++    RT+     EQ++ +M   G  PS++T    + + +  R LR     ++
Sbjct: 130 REAYNSLLMVMARTRKFNCLEQILEEMSIAGFGPSNNTCIEIVLSFIKSRKLREAFTFIQ 189

Query: 353 IMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMD 409
            M++   +P  S    L    S + + D    L  Q+       N   F+  +       
Sbjct: 190 TMRKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVFAREG 249

Query: 410 KPERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDS----------- 457
           + + A+ +  +M+   L PD+  Y +    FG           F ++ +           
Sbjct: 250 RVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKFFHEMKANGLVLDDVTYT 309

Query: 458 --------AKRIN-AIEM--DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTP 506
                   A R+N A+E+   M +N       +   ++   G  G   +        +  
Sbjct: 310 SMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLERQRRK 369

Query: 507 LGTPT---YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSA 563
              P+   YN +L  L    +   A++ F++MK   IP N +TYNIMID    + C K+ 
Sbjct: 370 GCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDAIP-NLSTYNIMID----MLC-KAG 423

Query: 564 SALVSMMVRD-----GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYN 618
               +++VRD     G +P  +T   ++  L      D+A ++ + +  +    D + Y 
Sbjct: 424 KLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYC 483

Query: 619 TILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
           ++++     GR+D    + EQM      P+      +   +  CG
Sbjct: 484 SLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCG 528



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 82/358 (22%), Positives = 139/358 (38%), Gaps = 31/358 (8%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           ++  +I   GR      A +L  QM      P++  Y   IR         +G ++   M
Sbjct: 481 TYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEM 540

Query: 355 QQNNLKPQDSTIATLSVECS-KALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDK 410
            +    P D  +    ++C  KA E++   AL  +I       + + ++  +        
Sbjct: 541 LRLGCSP-DLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGF 599

Query: 411 PERAIKIFAKMR-QKLRPDIRTYELLFSLF---GNVNAPYE----------------EGN 450
              A ++F  M+ Q    D R Y  +   F   G VN  Y+                 G+
Sbjct: 600 AHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGS 659

Query: 451 MFSQVDSAKRINAIEM---DMARNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSK 504
           +   +    R++   M   +     I+ + +   +L+   G  G I E   +++      
Sbjct: 660 VIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKG 719

Query: 505 TPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSAS 564
                 T+N +L +LV+A+E   A+  F+ MK     PN  TY+I+I     IR F  A 
Sbjct: 720 LTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAF 779

Query: 565 ALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILK 622
                M + GF P   TYT +I  L   G+  EA  L +    +G   D  +YN I++
Sbjct: 780 VFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIE 837



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 69/141 (48%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           +Y  ++H LV+A  +H A E+F  MK  G   +   YN +ID          A  L+  M
Sbjct: 586 SYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEM 645

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
              G  P  +TY ++I  L      DEA  L +    +GI  +V++Y++++    + GRI
Sbjct: 646 KTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRI 705

Query: 631 DVIEFIIEQMHQNKVQPDPST 651
           D    I+E++ Q  + P+  T
Sbjct: 706 DEAYLIMEELMQKGLTPNVYT 726



 Score = 52.8 bits (125), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 69/347 (19%), Positives = 137/347 (39%), Gaps = 20/347 (5%)

Query: 319 MQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALE 378
           M+  GL P+  T +  +  +   + L +   + + +     +P   T  +L     +   
Sbjct: 435 MKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGR 494

Query: 379 LDLAEALLDQI---SRCTNPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYEL 434
           +D A  L +Q+   ++  N   +++ +       + E   KI+ +M R    PD+    L
Sbjct: 495 VDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDL----L 550

Query: 435 LFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIR 494
           L + +  ++  ++ G +       ++  A+  ++          S   L+  L   G   
Sbjct: 551 LLNTY--MDCVFKAGEI-------EKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAH 601

Query: 495 ELIQYFCDSKTP---LGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI 551
           E  + F   K     L T  YNTV+    ++ + ++A ++ ++MKT G  P   TY  +I
Sbjct: 602 EAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVI 661

Query: 552 DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIP 611
           D  + I     A  L       G     + Y++LI      G  DEA  +++ +  +G+ 
Sbjct: 662 DGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLT 721

Query: 612 HDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
            +V  +N +L    +   I       + M   K  P+  T   +  G
Sbjct: 722 PNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHG 768



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 95/514 (18%), Positives = 190/514 (36%), Gaps = 55/514 (10%)

Query: 106 VMETWRMMEE--KEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNS 163
           V E  +  EE  K+   N   Y +M+  LCK G LE A  ++    +  G++P +   N 
Sbjct: 391 VDEALKKFEEMKKDAIPNLSTYNIMIDMLCKAGKLETAL-VVRDAMKDAGLFPNVITVNI 449

Query: 164 FLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHY 223
            +    K   +  A    + +D +    + VTY  L++       +   ++++E  +   
Sbjct: 450 MVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDAN 509

Query: 224 SL-SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIP 282
            + +       + +F +    +  ++    M+ L     L +  T               
Sbjct: 510 QIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNT--------------- 554

Query: 283 LNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDR 342
                        + D +   G  +       L  ++++LG  P + +Y   I  +V   
Sbjct: 555 -------------YMDCVFKAGEIEK---GRALFQEIKNLGFIPDARSYTILIHGLVKAG 598

Query: 343 GLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFL 402
                 E+   M++           T+     K+ +++ A  LL+++    +      + 
Sbjct: 599 FAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYG 658

Query: 403 AACDTMDKPER---AIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSA 458
           +  D + K +R   A  +F + + K +  ++  Y  L   FG V           ++D A
Sbjct: 659 SVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKV----------GRIDEA 708

Query: 459 KRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTV 515
             I     ++ +  +  +  +   LL AL     I E +  F   K    TP   TY+ +
Sbjct: 709 YLIME---ELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPNYITYSIL 765

Query: 516 LHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGF 575
           +H L + ++ ++A   +++M+  G  PN  TY  MI   +       A  L       G 
Sbjct: 766 IHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFKEKGG 825

Query: 576 YPQTMTYTALIKILLDYGDFDEALNLLDLVSLEG 609
              +  Y A+I+ L +     +A  L +   L+G
Sbjct: 826 VADSAIYNAIIEGLSNANRASDAYRLFEEARLKG 859



 Score = 43.9 bits (102), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 34/163 (20%), Positives = 65/163 (39%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
            Y  ++ +L  +++S   + +F+QM+  G   N   +  +I   +      +A +L+  M
Sbjct: 202 AYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVFAREGRVDAALSLLDEM 261

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
             +   P  + Y   I      G  D A      +   G+  D + Y +++   C+  R+
Sbjct: 262 KSNSLEPDVVLYNVCIDCFGKAGKVDMAWKFFHEMKANGLVLDDVTYTSMIGVLCKADRL 321

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           +    + E M QNK  P     + +  GY   G    A   L+
Sbjct: 322 NEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLE 364


>gi|297829236|ref|XP_002882500.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328340|gb|EFH58759.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 93/367 (25%), Positives = 159/367 (43%), Gaps = 32/367 (8%)

Query: 326 PSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEAL 385
           P+  TY+  I  +     L    E+   MQ+  L P   T+  +     K+ +LD A A+
Sbjct: 375 PNLSTYNILIDMLCRAGKLDCAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAI 434

Query: 386 LDQISR--CT-NPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLF-SLFGN 441
            +Q+    CT +   F + +     + + + A KI+ KM   L  D RT  +++ SL  N
Sbjct: 435 FEQMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKIYEKM---LDSDCRTNSIVYTSLIKN 491

Query: 442 V--NAPYEEGNMFSQVDSAKRINAIEMDMARNN----IQHSHISMKNLLKALGAEGMIRE 495
              +   E+G+             I  DM   N    +Q  +  M  + KA G     R 
Sbjct: 492 FFNHGRKEDGH------------KIYKDMVNQNCSPDLQLLNTYMDCMFKA-GEPEKGRA 538

Query: 496 LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCS 555
           + +     +      +Y+ ++H L++A  ++   E+F  MK  G   +   YNI+ID   
Sbjct: 539 MFEEIKSRRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVID--G 596

Query: 556 IIRCFK--SASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHD 613
             +C K   A  L+  M   GF P  +TY ++I  L      DEA  L +    + I  +
Sbjct: 597 FCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELN 656

Query: 614 VLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           V++Y++++    + GRID    I+E++ Q  + P+  T + +    V     N A+   Q
Sbjct: 657 VVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNVYTWNSLLDALVKAEEINEALVCFQ 716

Query: 674 VLSMRML 680
             SM+ L
Sbjct: 717 --SMKEL 721



 Score = 80.9 bits (198), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 120/552 (21%), Positives = 210/552 (38%), Gaps = 41/552 (7%)

Query: 109 TWRMMEEKEI-GL--NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFL 165
            W+   E E  GL  +   Y  M+  LCK   L+EA  +   L E+    P    YN+ +
Sbjct: 257 AWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHL-EKNRRVPCTYAYNTMI 315

Query: 166 GACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSL 225
                      A   L+   ++    + + Y  +L        +     ++E+  K  + 
Sbjct: 316 MGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALRVFEEMKKDAAP 375

Query: 226 SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRL-RSSRLDIPIPLN 284
           ++ +    +    R   L  A+E    M    +   +        RL +S +LD    + 
Sbjct: 376 NLSTYNILIDMLCRAGKLDCAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAIF 435

Query: 285 ALPVMKVL---RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSD 341
                KV      +F  +I   G+      A ++  +M     + +S  Y   I+   + 
Sbjct: 436 EQMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKIYEKMLDSDCRTNSIVYTSLIKNFFNH 495

Query: 342 RGLRNGMEVLKIMQQNNLKPQDSTIATLSVECS-KALELDLAEALLDQI-SRCTNP--KP 397
               +G ++ K M   N  P D  +    ++C  KA E +   A+ ++I SR   P  + 
Sbjct: 496 GRKEDGHKIYKDMVNQNCSP-DLQLLNTYMDCMFKAGEPEKGRAMFEEIKSRRFVPDARS 554

Query: 398 FSAFLAACDTMDKPERAIKIFAKMR-QKLRPDIRTYELLFSLF---GNVNAPYE------ 447
           +S  +             ++F  M+ Q    D R Y ++   F   G VN  Y+      
Sbjct: 555 YSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMK 614

Query: 448 ----------EGNMFSQVDSAKRINAIEM---DMARNNIQHSHISMKNLLKALGAEGMIR 494
                      G++   +    R++   M   +     I+ + +   +L+   G  G I 
Sbjct: 615 TKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRID 674

Query: 495 E----LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIM 550
           E    L +      TP    T+N++L +LV+A+E + A+  F+ MK     PN  TY I+
Sbjct: 675 EAYLILEELMQKGLTP-NVYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGIL 733

Query: 551 IDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGI 610
           I+    +R F  A      M + G  P T++YT +I  L   G+  EA  L D     G 
Sbjct: 734 INGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGG 793

Query: 611 PHDVLLYNTILK 622
             D   YN +++
Sbjct: 794 VPDSACYNAMIE 805



 Score = 69.3 bits (168), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 86/443 (19%), Positives = 174/443 (39%), Gaps = 69/443 (15%)

Query: 237 FTRLRDLKSAYETLQHMVALAMMGKLYINRTSEG-----RLRSSRLDIPIPLNALPVMKV 291
           F ++++L   YE   H+    + G     R          ++SS LD  I L        
Sbjct: 191 FQQMQEL--GYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVL-------- 240

Query: 292 LRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVL 351
               ++  I + G+     +A +   ++++ GL+P   TY   I  +     L   +E+ 
Sbjct: 241 ----YNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMF 296

Query: 352 KIMQQNNLKPQDSTIATLSVECSKALELDLAEALLD-QISRCTNPK--PFSAFLAACDTM 408
           + +++N   P      T+ +    A + D A +LL+ Q ++ + P    ++  L     M
Sbjct: 297 EHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKM 356

Query: 409 DKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
            K + A+++F +M++   P++ TY +L  +                        A ++D 
Sbjct: 357 GKVDEALRVFEEMKKDAAPNLSTYNILIDML---------------------CRAGKLDC 395

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRA 528
           A          +++ ++  G    +R                T N ++  L ++Q+   A
Sbjct: 396 A--------FELRDSMQKAGLFPNVR----------------TVNIMVDRLCKSQKLDEA 431

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
             IF+QM      P+  T+  +ID    +     A  +   M+       ++ YT+LIK 
Sbjct: 432 CAIFEQMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKIYEKMLDSDCRTNSIVYTSLIKN 491

Query: 589 LLDYGDFDEALNLL-DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
             ++G  ++   +  D+V+    P D+ L NT +    + G  +    + E++   +  P
Sbjct: 492 FFNHGRKEDGHKIYKDMVNQNCSP-DLQLLNTYMDCMFKAGEPEKGRAMFEEIKSRRFVP 550

Query: 648 DPSTCHFVFSGYVNCGFHNSAME 670
           D  +   +  G +  GF N   E
Sbjct: 551 DARSYSILIHGLIKAGFANETYE 573



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 57/271 (21%), Positives = 102/271 (37%), Gaps = 23/271 (8%)

Query: 404 ACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRIN 462
           +C   +K      +   MR+ K RP    Y  L   F  VN       +F Q+       
Sbjct: 142 SCVKANKLREGFDVVQNMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEP 201

Query: 463 AIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTP---LGTPTYNTVLHSL 519
            + +                L++    EG +   +    + K+         YN  + S 
Sbjct: 202 TVHL-------------FTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSF 248

Query: 520 VEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQT 579
            +  +   A + F +++  G+ P+  TY  MI           A  +   + ++   P T
Sbjct: 249 GKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCT 308

Query: 580 MTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQ 639
             Y  +I      G FDEA +LL+    +G    V+ YN IL    + G++D    + E+
Sbjct: 309 YAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALRVFEE 368

Query: 640 MHQNKVQPDPSTCHFVF-----SGYVNCGFH 665
           M ++   P+ ST + +      +G ++C F 
Sbjct: 369 MKKD-AAPNLSTYNILIDMLCRAGKLDCAFE 398



 Score = 56.2 bits (134), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 63/145 (43%), Gaps = 3/145 (2%)

Query: 510 PTYNTVLH---SLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASAL 566
           P+ NT +    S V+A +     ++ + M+     P  + Y  +I   S +        L
Sbjct: 131 PSVNTCIEMVLSCVKANKLREGFDVVQNMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTL 190

Query: 567 VSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE 626
              M   G+ P    +T LI+     G  D AL+LLD +    +  D++LYN  +    +
Sbjct: 191 FQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGK 250

Query: 627 KGRIDVIEFIIEQMHQNKVQPDPST 651
            G++D+      ++  N ++PD  T
Sbjct: 251 VGKVDMAWKFFHEIEANGLKPDEVT 275



 Score = 43.1 bits (100), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 32/163 (19%), Positives = 62/163 (38%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
            Y T++ +      S   + +F+QM+  G  P    +  +I   +      SA +L+  M
Sbjct: 170 AYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEM 229

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
                    + Y   I      G  D A      +   G+  D + Y +++   C+  R+
Sbjct: 230 KSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRL 289

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           D    + E + +N+  P     + +  GY + G  + A   L+
Sbjct: 290 DEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLE 332



 Score = 42.4 bits (98), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 59/257 (22%), Positives = 102/257 (39%), Gaps = 27/257 (10%)

Query: 105 FVMETWRM---MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVY 161
           F  ET+ +   M+E+   L+ + Y +++   CK G + +A  L+  +  + G  P +  Y
Sbjct: 567 FANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTK-GFEPTVVTY 625

Query: 162 NSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK 221
            S +   AK+  +  A +  +   S+ +  N V Y+ L+           V  I E Y+ 
Sbjct: 626 GSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLI------DGFGKVGRIDEAYLI 679

Query: 222 HYSLSIFSLRKFVWSFTRLRD-LKSAYETLQHMVALAMMGKLYI--NRTSEGRLRSSRLD 278
              L    L   V+++  L D L  A E  + +V    M +L    N+ + G L +    
Sbjct: 680 LEELMQKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCK 739

Query: 279 IPIPLNALPV--------MKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHT 330
           +     A           MK    S++ +I    +  N   A  L  + ++ G  P S  
Sbjct: 740 VRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSAC 799

Query: 331 YDGFIRAIVSDRGLRNG 347
           Y+  I       GL NG
Sbjct: 800 YNAMI------EGLSNG 810


>gi|449439559|ref|XP_004137553.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g18020-like [Cucumis sativus]
          Length = 646

 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 106/538 (19%), Positives = 201/538 (37%), Gaps = 77/538 (14%)

Query: 138 LEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYT 197
           L   ++ + F  +  G  P +  Y + +    ++ ++  A    D M    V  N +TY+
Sbjct: 143 LPNVAHRVLFDMKSRGHCPNVVSYTALIDGYCRVCNVSAAEKLFDEMPGNYVEPNSLTYS 202

Query: 198 ELLKLAVWQKNLSA----VHEIWEDY------------IKHYSLSIFSLRKFVWSFTRLR 241
            L+   +++++       +  +WE                H   S+  +  F   FT   
Sbjct: 203 VLINGFLYKRDFETGKALICNLWERMKGELDSSVNNAAFAHLVDSLCLVGSFHEVFTIAE 262

Query: 242 DLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIH 301
           D+       +      M+  L   +   G  R   +     LN  P +     S++ +IH
Sbjct: 263 DMPQGQSVPEEFAYGQMIDSLCKAKRYHGASRIVYIMRKKGLN--PGL----LSYNSIIH 316

Query: 302 ACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKP 361
              +      A QL+++    G  PS HTY   +  +  +   +   EVL+IM       
Sbjct: 317 GLSKEGGCMRAYQLLVEGVEFGYSPSEHTYKVLLEGLCKELDTQKAKEVLQIM------- 369

Query: 362 QDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKM 421
               I    V+ ++   + L                     A C T +  E    +   +
Sbjct: 370 ----IHKQGVDRTRIYNIYLR--------------------AVCLTNNSTELLNTLVEML 405

Query: 422 RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMK 481
           +   +PD+ T   +   F  V +  E   + + +   K                 H++  
Sbjct: 406 QTNCQPDVITLNTVIKGFCKVGSIEEALKVLNDMIGGKFCTP------------DHVTFT 453

Query: 482 NLLKALGAEGMIRE----LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKT 537
            ++  L   G IRE    L +   +     G  TYN  +  L + Q++++AM  F +M  
Sbjct: 454 TIIFGLLNVGRIRESLDILYKVMPEKGIVPGVITYNATIRGLFKLQQANQAMNTFDRMVR 513

Query: 538 CGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQ----TMTYTALIKILLDYG 593
            GI  ++ TY ++ID   +  C +     V    +D  +P     +  Y+A++K L    
Sbjct: 514 NGIQADSTTYAVVID--GLCDCNQIEE--VKRFWKDIVWPSKIHDSFVYSAILKGLCHSS 569

Query: 594 DFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
            F+EA + L  +S  G+   +  YN ++  AC+ G       ++++M +N + PD  T
Sbjct: 570 KFNEACHFLYELSDSGVSPTIFCYNIVINTACKLGLKGEAYRLVKEMRKNGLAPDAVT 627



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 125/310 (40%), Gaps = 17/310 (5%)

Query: 373 CSKALELDLAEALLDQISR--CTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDI 429
           CS +L       L D  SR  C N   ++A +     +     A K+F +M    + P+ 
Sbjct: 139 CSFSLPNVAHRVLFDMKSRGHCPNVVSYTALIDGYCRVCNVSAAEKLFDEMPGNYVEPNS 198

Query: 430 RTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGA 489
            TY +L + F      +E G      +  +R+   E+D + NN   +H     L+ +L  
Sbjct: 199 LTYSVLINGF-LYKRDFETGKALI-CNLWERMKG-ELDSSVNNAAFAH-----LVDSLCL 250

Query: 490 EGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAAT 546
            G   E+     D       P    Y  ++ SL +A+  H A  I   M+  G+ P   +
Sbjct: 251 VGSFHEVFTIAEDMPQGQSVPEEFAYGQMIDSLCKAKRYHGASRIVYIMRKKGLNPGLLS 310

Query: 547 YNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVS 606
           YN +I   S       A  L+   V  G+ P   TY  L++ L    D  +A  +L ++ 
Sbjct: 311 YNSIIHGLSKEGGCMRAYQLLVEGVEFGYSPSEHTYKVLLEGLCKELDTQKAKEVLQIMI 370

Query: 607 LEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHN 666
            +       +YN  L+  C       +   + +M Q   QPD  T + V  G+   G   
Sbjct: 371 HKQGVDRTRIYNIYLRAVCLTNNSTELLNTLVEMLQTNCQPDVITLNTVIKGFCKVG--- 427

Query: 667 SAMEALQVLS 676
           S  EAL+VL+
Sbjct: 428 SIEEALKVLN 437



 Score = 56.2 bits (134), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 97/449 (21%), Positives = 187/449 (41%), Gaps = 40/449 (8%)

Query: 239 RLRDLKSAYETLQHMVALAMMGKLYI-NRTSEGRLRSSRLDIPIPLNALPVMKVLR---- 293
           RL D +S Y TL+ +V L      ++ +  +  RL        +P  A  V+  ++    
Sbjct: 100 RLLDYRSPYCTLRLLVCLFDAKPEFVPSIVNYNRLIDQFCSFSLPNVAHRVLFDMKSRGH 159

Query: 294 ----WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGME 349
                S++ +I    R  N   AE+L  +M    ++P+S TY   I   +  R    G  
Sbjct: 160 CPNVVSYTALIDGYCRVCNVSAAEKLFDEMPGNYVEPNSLTYSVLINGFLYKRDFETGKA 219

Query: 350 VLKIMQQNNLKPQDSTIA---------TLSVECSKALELDLAEALLDQISRCTNPKPFSA 400
           ++  + +      DS++          +L +  S      +AE   D     + P+ F A
Sbjct: 220 LICNLWERMKGELDSSVNNAAFAHLVDSLCLVGSFHEVFTIAE---DMPQGQSVPEEF-A 275

Query: 401 FLAACDTMDKPER---AIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVD 456
           +    D++ K +R   A +I   MR+K L P + +Y  +      ++   +EG       
Sbjct: 276 YGQMIDSLCKAKRYHGASRIVYIMRKKGLNPGLLSYNSI------IHGLSKEGGCM---- 325

Query: 457 SAKRINAIEMDMARNNIQHSH-ISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTV 515
            A ++    ++   +  +H++ + ++ L K L  +   +E++Q     +    T  YN  
Sbjct: 326 RAYQLLVEGVEFGYSPSEHTYKVLLEGLCKELDTQKA-KEVLQIMIHKQGVDRTRIYNIY 384

Query: 516 LHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGF 575
           L ++     S   +    +M      P+  T N +I     +   + A  +++ M+   F
Sbjct: 385 LRAVCLTNNSTELLNTLVEMLQTNCQPDVITLNTVIKGFCKVGSIEEALKVLNDMIGGKF 444

Query: 576 -YPQTMTYTALIKILLDYGDFDEALNLLDLVSLE-GIPHDVLLYNTILKKACEKGRIDVI 633
             P  +T+T +I  LL+ G   E+L++L  V  E GI   V+ YN  ++   +  + +  
Sbjct: 445 CTPDHVTFTTIIFGLLNVGRIRESLDILYKVMPEKGIVPGVITYNATIRGLFKLQQANQA 504

Query: 634 EFIIEQMHQNKVQPDPSTCHFVFSGYVNC 662
               ++M +N +Q D +T   V  G  +C
Sbjct: 505 MNTFDRMVRNGIQADSTTYAVVIDGLCDC 533


>gi|384253709|gb|EIE27183.1| hypothetical protein COCSUDRAFT_38919 [Coccomyxa subellipsoidea
           C-169]
          Length = 675

 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 88/354 (24%), Positives = 147/354 (41%), Gaps = 44/354 (12%)

Query: 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
           R +F+ ++ AC R QN+  A++++  M+  G Q + HTY+ +I+A      +   ++VL 
Sbjct: 239 RVTFNTLLKACMRGQNAARADEVLAWMRERGCQGNEHTYNTYIKAASYSGDVERALKVLP 298

Query: 353 IMQQNNLKPQDSTIATLSVECSK-----------ALELDLAEALLDQISRC-TNPK--PF 398
            M  +   P  +   +L V C K           A +++ A  L  Q++   T P     
Sbjct: 299 QMAADGCAPTPAVWGSLIVACGKSPKVAPQPFGMARQVESALGLWRQMAASGTTPTVDNC 358

Query: 399 SAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDS 457
           +A L AC   D+ ERA+ I+  M+   + PD+ TY L     G        G   S++ S
Sbjct: 359 NALLTACIDCDQGERALDIYRSMKDLGVEPDLVTYNLAVRACG--------GQSGSKLRS 410

Query: 458 AKRINAIEM--DMARNNI---QHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTY 512
           A+   A ++  DM    +   Q +  SM  L    GA      L +   DS   +     
Sbjct: 411 AQLDQAFQLLADMRAAGVAPDQQTVTSMLALCAQAGAGRRALALYEEVKDSGIRIDVALQ 470

Query: 513 NTVLHSLVEAQESHRAMEIFKQM--KTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           + ++ +L     +  A+ +F++M      + PN  TY ++   C      K A      M
Sbjct: 471 SALIAALGSEGLAEDALAVFRKMVWGPRRMKPNEHTYRLVTRICREAGLVKEALHAYRGM 530

Query: 571 VRDGFYPQTMTYTALIKILL-------DYGD-------FDEALNLLDLVSLEGI 610
            R GF P    +  +I   +       D GD        DEA + +DL  L  +
Sbjct: 531 RRMGFRPSNAEWREMISAAVEAAMAEKDGGDLVASCLGLDEAQSWVDLHGLTSV 584



 Score = 42.4 bits (98), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 34/178 (19%), Positives = 74/178 (41%), Gaps = 15/178 (8%)

Query: 505 TPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSAS 564
           +P  T T N +L++L  + +   A  ++ ++   G+ P   T+N ++  C   +    A 
Sbjct: 202 SPQDTHTVNILLNAL--SSDLPAAFAMYNELMAGGLEPTRVTFNTLLKACMRGQNAARAD 259

Query: 565 ALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKA 624
            +++ M   G      TY   IK     GD + AL +L  ++ +G      ++ +++  A
Sbjct: 260 EVLAWMRERGCQGNEHTYNTYIKAASYSGDVERALKVLPQMAADGCAPTPAVWGSLI-VA 318

Query: 625 CEKG------------RIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAME 670
           C K             +++    +  QM  +   P    C+ + +  ++C     A++
Sbjct: 319 CGKSPKVAPQPFGMARQVESALGLWRQMAASGTTPTVDNCNALLTACIDCDQGERALD 376


>gi|356551783|ref|XP_003544253.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 576

 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 84/372 (22%), Positives = 158/372 (42%), Gaps = 51/372 (13%)

Query: 309 SGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRG-LRNGMEVLKIMQQNNLKPQDSTIA 367
           SG  E+ +  +  +G+ P++ TYD  + ++  DRG L+  M+VL    Q+   P      
Sbjct: 162 SGEIEEALRVLDRMGVSPNAATYDAVLCSLC-DRGKLKQAMQVLGRQLQSKCYPD----- 215

Query: 368 TLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LR 426
              V C+  ++    E+ + Q                         A+K+F +MR K  +
Sbjct: 216 --VVTCTVLIDATCKESGVGQ-------------------------AMKLFNEMRNKGCK 248

Query: 427 PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKA 486
           PD+ TY +L   F       + G +   +   K++ +          Q   IS   +L++
Sbjct: 249 PDVVTYNVLIKGF------CKGGRLDEAIRFLKKLPSY-------GCQPDVISHNMILRS 295

Query: 487 LGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPN 543
           L + G   + ++           P   T+N +++ L +     +A+ + + M   G  PN
Sbjct: 296 LCSGGRWMDAMKLLATMLRKGCLPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTPN 355

Query: 544 AATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLD 603
           + ++N +I      +    A   + +MV  G YP  +TY  L+  L   G  D+A+ +L 
Sbjct: 356 SRSFNPLIQGFCNGKGIDRAIEYLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILS 415

Query: 604 LVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
            +S +G    ++ YNT++    + G+ ++   ++E+M    ++PD  TC  V  G    G
Sbjct: 416 QLSSKGCSPSLISYNTVIDGLLKVGKAELAVELLEEMCYKGLKPDLITCTSVVGGLSREG 475

Query: 664 FHNSAMEALQVL 675
               AM+    L
Sbjct: 476 KVREAMKFFHYL 487



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 74/366 (20%), Positives = 153/366 (41%), Gaps = 17/366 (4%)

Query: 319 MQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALE 378
           M + G  P        IR        +N  +++ I++++      ++   L     K+ E
Sbjct: 105 MTNKGKSPDVIACTALIREFCKIGRTKNASQIMGILEESGAVIDVTSYNVLISGYCKSGE 164

Query: 379 LDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAK-MRQKLRPDIRTYELLFS 437
           ++ A  +LD++    N   + A L +     K ++A+++  + ++ K  PD+ T  +L  
Sbjct: 165 IEEALRVLDRMGVSPNAATYDAVLCSLCDRGKLKQAMQVLGRQLQSKCYPDVVTCTVLID 224

Query: 438 LFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELI 497
                +   +   +F+++    R    + D+   N+         L+K     G + E I
Sbjct: 225 ATCKESGVGQAMKLFNEM----RNKGCKPDVVTYNV---------LIKGFCKGGRLDEAI 271

Query: 498 QYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCC 554
           ++     +    P   ++N +L SL        AM++   M   G  P+  T+NI+I+  
Sbjct: 272 RFLKKLPSYGCQPDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCLPSVVTFNILINFL 331

Query: 555 SIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDV 614
                   A  ++ MM + G  P + ++  LI+   +    D A+  L+++   G   D+
Sbjct: 332 CQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNGKGIDRAIEYLEIMVSRGCYPDI 391

Query: 615 LLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQV 674
           + YN +L   C+ G++D    I+ Q+      P   + + V  G +  G    A+E L+ 
Sbjct: 392 VTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKAELAVELLEE 451

Query: 675 LSMRML 680
           +  + L
Sbjct: 452 MCYKGL 457



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 84/370 (22%), Positives = 146/370 (39%), Gaps = 30/370 (8%)

Query: 314 QLMLQMQSLGLQPSSHTYDG------FIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIA 367
           +L   MQ LG Q  S  Y         I A   + G+   M++   M+    KP   T  
Sbjct: 196 KLKQAMQVLGRQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRNKGCKPDVVTYN 255

Query: 368 TLSVECSKALELDLAEALLDQI-SRCTNPKPFS--AFLAACDTMDKPERAIKIFAKM-RQ 423
            L     K   LD A   L ++ S    P   S    L +  +  +   A+K+ A M R+
Sbjct: 256 VLIKGFCKGGRLDEAIRFLKKLPSYGCQPDVISHNMILRSLCSGGRWMDAMKLLATMLRK 315

Query: 424 KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNL 483
              P + T+ +L      +N   ++G +       K +N +EM M ++    +  S   L
Sbjct: 316 GCLPSVVTFNIL------INFLCQKGLL------GKALNVLEM-MPKHGHTPNSRSFNPL 362

Query: 484 LKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGI 540
           ++       I   I+Y     +    P   TYN +L +L +  +   A+ I  Q+ + G 
Sbjct: 363 IQGFCNGKGIDRAIEYLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGC 422

Query: 541 PPNAATYNIMIDCCSIIRCFKS--ASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEA 598
            P+  +YN +ID   +++  K+  A  L+  M   G  P  +T T+++  L   G   EA
Sbjct: 423 SPSLISYNTVID--GLLKVGKAELAVELLEEMCYKGLKPDLITCTSVVGGLSREGKVREA 480

Query: 599 LNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
           +     +    I  +  +YN+I+   C+  +  +    +  M     +P  +T   +  G
Sbjct: 481 MKFFHYLKRFAIRPNAFIYNSIITGLCKSQQTSLAIDFLADMVAKGCKPTEATYTTLIKG 540

Query: 659 YVNCGFHNSA 668
               G    A
Sbjct: 541 ITYEGLAEDA 550



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 56/270 (20%), Positives = 111/270 (41%), Gaps = 31/270 (11%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL-S 370
           A + + ++ S G QP   +++  +R++ S     + M++L  M +    P   T   L +
Sbjct: 270 AIRFLKKLPSYGCQPDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCLPSVVTFNILIN 329

Query: 371 VECSKAL---ELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LR 426
             C K L    L++ E ++ +     N + F+  +         +RAI+    M  +   
Sbjct: 330 FLCQKGLLGKALNVLE-MMPKHGHTPNSRSFNPLIQGFCNGKGIDRAIEYLEIMVSRGCY 388

Query: 427 PDIRTYELLFSLFGNVNAPYEEGNMFSQ----------------VDSAKRINAIEM---- 466
           PDI TY +L +         +   + SQ                +D   ++   E+    
Sbjct: 389 PDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKAELAVEL 448

Query: 467 --DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPT---YNTVLHSLVE 521
             +M    ++   I+  +++  L  EG +RE +++F   K     P    YN+++  L +
Sbjct: 449 LEEMCYKGLKPDLITCTSVVGGLSREGKVREAMKFFHYLKRFAIRPNAFIYNSIITGLCK 508

Query: 522 AQESHRAMEIFKQMKTCGIPPNAATYNIMI 551
           +Q++  A++    M   G  P  ATY  +I
Sbjct: 509 SQQTSLAIDFLADMVAKGCKPTEATYTTLI 538


>gi|449511869|ref|XP_004164076.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 86/394 (21%), Positives = 157/394 (39%), Gaps = 52/394 (13%)

Query: 315 LMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECS 374
           L   M+  GL P+  TY+  ++A+  +  +    ++   M      P   T  T+     
Sbjct: 166 LYTNMKKDGLIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLC 225

Query: 375 KALELDLAEALLDQISRCTNPKP-FSAFLAACDTMDKPER---AIKIFAKMRQK-LRPDI 429
           KA ++D A  L  +       KP    + A  D M K  R   AIK+  +M    + P++
Sbjct: 226 KAGKIDDARELAGRF------KPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNV 279

Query: 430 RTY-------------ELLFSLFGN----------------VNAPYEEGNMFSQVDSAKR 460
            +Y             EL F+LF                  +   +  G ++  +D  K 
Sbjct: 280 VSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKL 339

Query: 461 INAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLG----TPTYNTVL 516
                  M ++  + + ++   L+  L + G + E +Q  CD     G      TY+ ++
Sbjct: 340 -------MIQDGCEPNVVAYNTLIHGLCSNGSLEEALQ-VCDQMQRSGCLPNVTTYSILI 391

Query: 517 HSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFY 576
               ++ +   A E + +M + G  PN  TY  M+D       F  A++LV  M  +G  
Sbjct: 392 DGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCT 451

Query: 577 PQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFI 636
           P T+T+   IK L   G  + A+ LL+ +   G   ++  YN +L       + +    +
Sbjct: 452 PNTITFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGL 511

Query: 637 IEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAME 670
            +++    +QP+  T + V  G+   G    A++
Sbjct: 512 FQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQ 545



 Score = 79.3 bits (194), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 122/571 (21%), Positives = 213/571 (37%), Gaps = 59/571 (10%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           ++ ++    + G  E+A  + Y +GE +G  P + +YN  L A    +     N     M
Sbjct: 112 FICIINGYKRVGSAEQALKMFYRIGE-FGCKPTVRIYNHLLDALLSENKFQMINPLYTNM 170

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIW-EDYIKHYSLSIFSLRKFVWSFTRLRDL 243
               +  N  TY  LLK       + A H+++ E   K       +    V S  +   +
Sbjct: 171 KKDGLIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKI 230

Query: 244 KSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPL------NALPVMKVLRWSFS 297
             A E          +     N   +G  +  R+++ I L      N +    V   S+S
Sbjct: 231 DDARELAGRFKPSVPV----YNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVV---SYS 283

Query: 298 DVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQN 357
            +I++   + N  LA  L  QM   G   + HT+   I+       L   +++ K+M Q+
Sbjct: 284 CIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQD 343

Query: 358 NLKPQDSTIATL-SVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIK 416
             +P      TL    CS      L EA                 L  CD M        
Sbjct: 344 GCEPNVVAYNTLIHGLCSNG---SLEEA-----------------LQVCDQMQ------- 376

Query: 417 IFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHS 476
                R    P++ TY +L   F       + G++   V +++  N +     R N+  +
Sbjct: 377 -----RSGCLPNVTTYSILIDGFA------KSGDL---VGASETWNRMISHGCRPNVV-T 421

Query: 477 HISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMK 536
           +  M ++L           L++          T T+NT +  L        AM++ ++M+
Sbjct: 422 YTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTITFNTFIKGLCGNGRVEWAMKLLERMQ 481

Query: 537 TCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFD 596
             G  PN  TYN ++D    +  ++ A  L   +      P  +TY  ++      G   
Sbjct: 482 GHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMG 541

Query: 597 EALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK-VQPDPSTCHFV 655
           EAL L     + G   D + YNT++   C++G++ +   ++E++   K   PD  T   +
Sbjct: 542 EALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERVSSMKEWHPDIITYTSL 601

Query: 656 FSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
             G  N      AM  L     + +C   +T
Sbjct: 602 IWGACNWMNIEEAMAFLDKAINQGICPNFAT 632



 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 81/365 (22%), Positives = 153/365 (41%), Gaps = 59/365 (16%)

Query: 333 GFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALL-----D 387
           GF  AI +    ++     ++M           I  L  EC    E+D+ + +L     D
Sbjct: 59  GFFSAIANSNAFQHTASTYRVM-----------IERLGREC----EMDMVQYILQQMKMD 103

Query: 388 QISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSL------FG 440
            I+ C +   F   +     +   E+A+K+F ++ +   +P +R Y  L         F 
Sbjct: 104 GINCCEDL--FICIINGYKRVGSAEQALKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQ 161

Query: 441 NVNAPY----EEG---NMFS------------QVDSAKRINAIEMDMARNNIQHSHISMK 481
            +N  Y    ++G   N+F+            +VD+A ++    ++M+        ++  
Sbjct: 162 MINPLYTNMKKDGLIPNVFTYNILLKALCKNDRVDAAHKL---FVEMSNKGCPPDAVTYT 218

Query: 482 NLLKALGAEGMI---RELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTC 538
            ++ +L   G I   REL   F  S      P YN ++  + +      A+++  +M   
Sbjct: 219 TMVSSLCKAGKIDDARELAGRFKPS-----VPVYNALIDGMCKEGRIEVAIKLLGEMMDN 273

Query: 539 GIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEA 598
           G+ PN  +Y+ +I+   +    + A AL + M   G      T+T LIK     G   EA
Sbjct: 274 GVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEA 333

Query: 599 LNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
           L+L  L+  +G   +V+ YNT++   C  G ++    + +QM ++   P+ +T   +  G
Sbjct: 334 LDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDG 393

Query: 659 YVNCG 663
           +   G
Sbjct: 394 FAKSG 398



 Score = 72.8 bits (177), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 111/500 (22%), Positives = 204/500 (40%), Gaps = 71/500 (14%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFL-GACAKLHSMVHANLCLDL 183
           Y  M+ +LCK G +++A  L      R+   P +PVYN+ + G C +    V   L  ++
Sbjct: 217 YTTMVSSLCKAGKIDDAREL----AGRFK--PSVPVYNALIDGMCKEGRIEVAIKLLGEM 270

Query: 184 MDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWED-YIKHYSLSIFSLRKFV-WSFTRLR 241
           MD+  V  N V+Y+ ++       N+     ++   +++    +I +    +   F R +
Sbjct: 271 MDNG-VDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGK 329

Query: 242 DLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIH 301
                YE L        + KL I    E  + +                     ++ +IH
Sbjct: 330 ----LYEALD-------LWKLMIQDGCEPNVVA---------------------YNTLIH 357

Query: 302 ACGRTQNSGLAEQLML--QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNL 359
             G   N  L E L +  QMQ  G  P+  TY   I        L    E    M  +  
Sbjct: 358 --GLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGC 415

Query: 360 KPQDSTIATLSVECSKALELDLAEALLDQIS--RCT-NPKPFSAFLAACDTMDKPERAIK 416
           +P   T   +     K    D A +L+++++   CT N   F+ F+       + E A+K
Sbjct: 416 RPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTITFNTFIKGLCGNGRVEWAMK 475

Query: 417 IFAKMR-QKLRPDIRTY-ELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQ 474
           +  +M+     P+I TY ELL +LF  +N   E   +F ++++              N+Q
Sbjct: 476 LLERMQGHGCLPNITTYNELLDALF-RMNKYEEAFGLFQEIEA-------------RNLQ 521

Query: 475 HSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEI 531
            + ++   +L      GM+ E +Q F  +      P   TYNT++H+  +  +   A ++
Sbjct: 522 PNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQL 581

Query: 532 FKQMKTCG-IPPNAATYNIMI-DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
            +++ +     P+  TY  +I   C+ +   + A A +   +  G  P   T+ AL++  
Sbjct: 582 VERVSSMKEWHPDIITYTSLIWGACNWMN-IEEAMAFLDKAINQGICPNFATWNALVRCF 640

Query: 590 LDYGDFDEALNLLDLVSLEG 609
            D       +++LD +  +G
Sbjct: 641 FDSLGHMGPIHILDDILRKG 660


>gi|255539196|ref|XP_002510663.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223551364|gb|EEF52850.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 695

 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 83/368 (22%), Positives = 155/368 (42%), Gaps = 36/368 (9%)

Query: 299 VIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNN 358
           VI A G +     AE +  +M+  GL+P +  Y+G ++  V    L++   ++  M+++ 
Sbjct: 297 VISALGDSGRIIEAEAIFEEMKDNGLKPKTRAYNGLLKGYVKAGMLKDAEFIVSEMERSG 356

Query: 359 LKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKPERAI 415
           + P + T + L    S A   + A  +L ++       N   FS  LA+     + +++ 
Sbjct: 357 VSPDECTYSLLIDAYSNAGRWESARIVLKEMEANNIMPNSYVFSRILASYRDRGEWQKSF 416

Query: 416 KIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMD----MAR 470
           ++  +M+   +RPD   Y ++   FG           FS +D A       MD    M  
Sbjct: 417 QVLKEMKNSGVRPDRHFYNVMIDTFGK----------FSCLDHA-------MDTFDKMLS 459

Query: 471 NNIQHSHISMKNLLKA-------LGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQ 523
             IQ   ++   L+           AE +  E+++      +P  T T+N +++S  E +
Sbjct: 460 EGIQPDTVTWNTLIDCHCKAELHERAEELFEEMME---KGFSPCVT-TFNIMINSFGEQE 515

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
                  +   M++ G+ PN  TY  +ID       F  A   +  M   G  P +  Y 
Sbjct: 516 RWDDVKTLMGNMRSLGLLPNVVTYTTLIDIYGKSGRFSDAIECLEDMKSAGLKPSSTMYN 575

Query: 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
           ALI      G  ++A+N   L+  + +   +L  N+++    E  R      +++ M +N
Sbjct: 576 ALINAYAQKGLSEQAVNAFRLMRADSLKPSLLALNSLINAFGEDRRDAEAFSVLKYMKEN 635

Query: 644 KVQPDPST 651
            ++PD  T
Sbjct: 636 DLKPDVVT 643



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 93/422 (22%), Positives = 179/422 (42%), Gaps = 39/422 (9%)

Query: 295 SFSDVIHACGRTQ--NSGLAEQLMLQMQ----SLGLQPSSHTYDGFIRAIVSDRGLRNGM 348
           ++S +I +  R+   +S + ++L  ++Q     L +Q S+    GF +A   ++     M
Sbjct: 221 NYSLIIQSLVRSNRIDSPILQKLYSEIQCDKLELDVQLSNDIIVGFAKAGDPNKA----M 276

Query: 349 EVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI-SRCTNPK--PFSAFLAAC 405
           E L ++Q + L P+ +T+  +      +  +  AEA+ +++      PK   ++  L   
Sbjct: 277 EFLGMVQASGLSPRTATLIAVISALGDSGRIIEAEAIFEEMKDNGLKPKTRAYNGLLKGY 336

Query: 406 DTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAI 464
                 + A  I ++M R  + PD  TY LL   + N            + +SA+    +
Sbjct: 337 VKAGMLKDAEFIVSEMERSGVSPDECTYSLLIDAYSNA----------GRWESAR---IV 383

Query: 465 EMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPT---YNTVLHSLVE 521
             +M  NNI  +      +L +    G  ++  Q   + K     P    YN ++ +  +
Sbjct: 384 LKEMEANNIMPNSYVFSRILASYRDRGEWQKSFQVLKEMKNSGVRPDRHFYNVMIDTFGK 443

Query: 522 AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMT 581
                 AM+ F +M + GI P+  T+N +IDC       + A  L   M+  GF P   T
Sbjct: 444 FSCLDHAMDTFDKMLSEGIQPDTVTWNTLIDCHCKAELHERAEELFEEMMEKGFSPCVTT 503

Query: 582 YTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI-DVIEFIIEQM 640
           +  +I    +   +D+   L+  +   G+  +V+ Y T++    + GR  D IE  +E M
Sbjct: 504 FNIMINSFGEQERWDDVKTLMGNMRSLGLLPNVVTYTTLIDIYGKSGRFSDAIE-CLEDM 562

Query: 641 HQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL-------SMRMLCEEVSTLEEKRSD 693
               ++P  +  + + + Y   G    A+ A +++       S+  L   ++   E R D
Sbjct: 563 KSAGLKPSSTMYNALINAYAQKGLSEQAVNAFRLMRADSLKPSLLALNSLINAFGEDRRD 622

Query: 694 FE 695
            E
Sbjct: 623 AE 624



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 71/337 (21%), Positives = 141/337 (41%), Gaps = 32/337 (9%)

Query: 381 LAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRP-DIRTYELLFSLF 439
           L EA L    +  +P  ++A + AC   +  E+AI + ++MRQ   P D   Y L+    
Sbjct: 170 LYEAFLLSQQQALSPLTYNALINACARNNDLEKAINLISRMRQDGYPSDFVNYSLIIQSL 229

Query: 440 GNVNAPYEEGNMFSQVDSAKRINAIEMDMARNN---------------------IQHSHI 478
             V +   +  +  ++ S  + + +E+D+  +N                     +Q S +
Sbjct: 230 --VRSNRIDSPILQKLYSEIQCDKLELDVQLSNDIIVGFAKAGDPNKAMEFLGMVQASGL 287

Query: 479 SMKN-----LLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAME 530
           S +      ++ ALG  G I E   + +   D+     T  YN +L   V+A     A  
Sbjct: 288 SPRTATLIAVISALGDSGRIIEAEAIFEEMKDNGLKPKTRAYNGLLKGYVKAGMLKDAEF 347

Query: 531 IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590
           I  +M+  G+ P+  TY+++ID  S    ++SA  ++  M  +   P +  ++ ++    
Sbjct: 348 IVSEMERSGVSPDECTYSLLIDAYSNAGRWESARIVLKEMEANNIMPNSYVFSRILASYR 407

Query: 591 DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650
           D G++ ++  +L  +   G+  D   YN ++    +   +D      ++M    +QPD  
Sbjct: 408 DRGEWQKSFQVLKEMKNSGVRPDRHFYNVMIDTFGKFSCLDHAMDTFDKMLSEGIQPDTV 467

Query: 651 TCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTL 687
           T + +   +     H  A E  + +  +     V+T 
Sbjct: 468 TWNTLIDCHCKAELHERAEELFEEMMEKGFSPCVTTF 504



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 67/324 (20%), Positives = 138/324 (42%), Gaps = 25/324 (7%)

Query: 298 DVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRG-LRNGMEVLKIMQQ 356
           D     GR ++   A  ++ +M++  + P+S+ +   I A   DRG  +   +VLK M+ 
Sbjct: 369 DAYSNAGRWES---ARIVLKEMEANNIMPNSYVFSR-ILASYRDRGEWQKSFQVLKEMKN 424

Query: 357 NNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPKPFS-AFLAACD-TMDKPER 413
           + ++P       +     K   LD A    D+ +S    P   +   L  C    +  ER
Sbjct: 425 SGVRPDRHFYNVMIDTFGKFSCLDHAMDTFDKMLSEGIQPDTVTWNTLIDCHCKAELHER 484

Query: 414 AIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNN 472
           A ++F +M +K   P + T+ ++ + FG             + +    +  +  +M    
Sbjct: 485 AEELFEEMMEKGFSPCVTTFNIMINSFG-------------EQERWDDVKTLMGNMRSLG 531

Query: 473 IQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPT---YNTVLHSLVEAQESHRAM 529
           +  + ++   L+   G  G   + I+   D K+    P+   YN ++++  +   S +A+
Sbjct: 532 LLPNVVTYTTLIDIYGKSGRFSDAIECLEDMKSAGLKPSSTMYNALINAYAQKGLSEQAV 591

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
             F+ M+   + P+    N +I+     R    A +++  M  +   P  +TYT L+K L
Sbjct: 592 NAFRLMRADSLKPSLLALNSLINAFGEDRRDAEAFSVLKYMKENDLKPDVVTYTTLMKAL 651

Query: 590 LDYGDFDEALNLLDLVSLEGIPHD 613
           +    F++  ++ + + L G   D
Sbjct: 652 IRVDKFNKVPSVYEEMILAGCTPD 675



 Score = 45.4 bits (106), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 81/374 (21%), Positives = 149/374 (39%), Gaps = 45/374 (12%)

Query: 106 VMETWRMMEE-KEIGLNNK--CYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYN 162
           ++E   + EE K+ GL  K   Y  +++   K G L++A  ++  + ER G+ P    Y+
Sbjct: 307 IIEAEAIFEEMKDNGLKPKTRAYNGLLKGYVKAGMLKDAEFIVSEM-ERSGVSPDECTYS 365

Query: 163 SFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELL----KLAVWQKNLSAVHEIWED 218
             + A +       A + L  M++  +  N   ++ +L        WQK+   + E+   
Sbjct: 366 LLIDAYSNAGRWESARIVLKEMEANNIMPNSYVFSRILASYRDRGEWQKSFQVLKEMKNS 425

Query: 219 YIK----HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRT------- 267
            ++     Y++ I +  KF         L  A +T   M++  +        T       
Sbjct: 426 GVRPDRHFYNVMIDTFGKFSC-------LDHAMDTFDKMLSEGIQPDTVTWNTLIDCHCK 478

Query: 268 SEGRLRSSRLDIPIPLNAL-PVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQP 326
           +E   R+  L   +      P +     +F+ +I++ G  +     + LM  M+SLGL P
Sbjct: 479 AELHERAEELFEEMMEKGFSPCVT----TFNIMINSFGEQERWDDVKTLMGNMRSLGLLP 534

Query: 327 SSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTI-ATLSVECSKALELDLAEAL 385
           +  TY   I          + +E L+ M+   LKP  +   A ++    K L      A 
Sbjct: 535 NVVTYTTLIDIYGKSGRFSDAIECLEDMKSAGLKPSSTMYNALINAYAQKGLSEQAVNAF 594

Query: 386 LDQISRCTNPKP----FSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSL-- 438
             ++ R  + KP     ++ + A     +   A  +   M++  L+PD+ TY  L     
Sbjct: 595 --RLMRADSLKPSLLALNSLINAFGEDRRDAEAFSVLKYMKENDLKPDVVTYTTLMKALI 652

Query: 439 ----FGNVNAPYEE 448
               F  V + YEE
Sbjct: 653 RVDKFNKVPSVYEE 666


>gi|414880874|tpg|DAA58005.1| TPA: hypothetical protein ZEAMMB73_979671 [Zea mays]
          Length = 730

 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 82/364 (22%), Positives = 150/364 (41%), Gaps = 34/364 (9%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ VI  C R     L  +++ +M   GL P + T+   + A V    +     +++ M
Sbjct: 260 TYNVVIKMCARAGRKDLVARVLERMLFSGLTPCATTFHSLVAAFVGFGDIATAERIVQAM 319

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERA 414
           ++   K     +  +S++C    +++    LLD I              A     +    
Sbjct: 320 REER-KDICLLLRAVSMDCDGVTDVEEGAVLLDDI-------------VAGAKQGQGSDE 365

Query: 415 IKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQ 474
           + +  K      P+ R Y  L   + N        +    V  A R  A     +R +  
Sbjct: 366 VPLLPK---AYPPNARVYTTLMKGYTNAG----RVDDVLAVLRAMRQEAQTAPASRPD-- 416

Query: 475 HSHISMKNLLKAL-GAEGMIRE--LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEI 531
             H++   ++ AL GA  M R   ++     ++ P    TYN +L    +  +  +A E+
Sbjct: 417 --HVTYTTVISALVGAGDMARARAVLNEMAAARVPANRVTYNVLLKGYCQQLQIGQAREL 474

Query: 532 FKQMKT-CGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590
           F++M T  GI P   TYN ++D C +      A A  + M   G  P T++YT L+K   
Sbjct: 475 FEEMVTDAGIQPGVVTYNTLMDGCVLTDDSAGALAFFNEMRSRGIAPSTVSYTTLMKAFA 534

Query: 591 DYGDFDEALNLLDLVSLEGIPH---DVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
             G    A  + +   +E  P    D   +N +++  C  G ++  + ++E+M +  VQP
Sbjct: 535 VSGQPKVAHKVFE--EMERDPRVTVDRAAWNMLVEGYCRLGLVETAKQVVERMKERGVQP 592

Query: 648 DPST 651
           D +T
Sbjct: 593 DVAT 596



 Score = 44.7 bits (104), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 31/131 (23%), Positives = 58/131 (44%), Gaps = 16/131 (12%)

Query: 541 PPNAATYNIMI----------DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590
           PPNA  Y  ++          D  +++R  +  +            P  +TYT +I  L+
Sbjct: 374 PPNARVYTTLMKGYTNAGRVDDVLAVLRAMRQEAQTAP-----ASRPDHVTYTTVISALV 428

Query: 591 DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK-VQPDP 649
             GD   A  +L+ ++   +P + + YN +LK  C++ +I     + E+M  +  +QP  
Sbjct: 429 GAGDMARARAVLNEMAAARVPANRVTYNVLLKGYCQQLQIGQARELFEEMVTDAGIQPGV 488

Query: 650 STCHFVFSGYV 660
            T + +  G V
Sbjct: 489 VTYNTLMDGCV 499



 Score = 44.7 bits (104), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 29/120 (24%), Positives = 54/120 (45%), Gaps = 12/120 (10%)

Query: 591 DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650
           D GD      L D +S      D L YN ++K     GR D++  ++E+M  + + P  +
Sbjct: 235 DAGDCRRFRQLFDAMSEWSAAADALTYNVVIKMCARAGRKDLVARVLERMLFSGLTPCAT 294

Query: 651 TCHFVFSGYVNCGFHNSAMEALQVL------------SMRMLCEEVSTLEEKRSDFEDLI 698
           T H + + +V  G   +A   +Q +            ++ M C+ V+ +EE     +D++
Sbjct: 295 TFHSLVAAFVGFGDIATAERIVQAMREERKDICLLLRAVSMDCDGVTDVEEGAVLLDDIV 354


>gi|357438771|ref|XP_003589662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478710|gb|AES59913.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 988

 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 80/354 (22%), Positives = 150/354 (42%), Gaps = 20/354 (5%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A++L+ QM  LGL+ S+HTY+  IR            ++ + M      P   T  T+  
Sbjct: 261 AKELIEQMSMLGLKVSAHTYNPLIRGFCKKEMFEEANDLRREMLGRGALPTVVTYNTIMY 320

Query: 372 ECSKALELDLAEALLD-QISRCTNPK--PFSAFLAACDTMDKPERAIKIFAKMRQK-LRP 427
              +   +  A   LD  ++    P    ++  +     +     A+ +F+++R K L P
Sbjct: 321 SLCRLGRVSDARRYLDVMVNEDLMPDLVSYNTLIYGYSRLGNFAEALLLFSELRSKNLVP 380

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKA- 486
            + TY  L      ++     GN+    D AK    ++ DM ++ +    ++   L++  
Sbjct: 381 SVVTYNTL------IDGGCRTGNL----DIAK---GMKDDMIKHGLCPDVVTFTILVRGF 427

Query: 487 --LGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNA 544
             +G   M +EL               Y T +   ++     +A  + ++MK  G PP+ 
Sbjct: 428 CQMGNLPMAKELFDEMLSRGLKPDCIAYTTRIVGELKLGNPSKAFGMKEEMKAEGFPPDL 487

Query: 545 ATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDL 604
            TYN++I+    +  F  A+ LV  M  +G  P  +TYT++I   L  G   +A  +   
Sbjct: 488 ITYNVLINGLCKLGNFDDANELVQKMRLEGIVPDHVTYTSIIHAHLISGLLRKAEEVFSD 547

Query: 605 VSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
           +  +GI   V+ Y  ++     +GR+D  +   ++M    V P+  T + +  G
Sbjct: 548 MLKKGIHPSVVTYTVLIHSYAVRGRLDFAKKYFDEMQDKGVSPNVITYNALIYG 601



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 90/209 (43%), Gaps = 7/209 (3%)

Query: 483 LLKALGAEGMIRELIQYF-----CDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKT 537
           +LK L  + M+ E+ + +     C  +  +   T+NT++ S  +  E  RA+E+   M+ 
Sbjct: 178 VLKLLKDKSMVNEVEEVYSVMIKCQIRPTI--VTFNTMMDSRCKEGEVGRAVEVLDVMRM 235

Query: 538 CGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDE 597
            G  PN  +YN++++  S    F  A  L+  M   G      TY  LI+       F+E
Sbjct: 236 FGCDPNDVSYNVLVNGLSGKGEFDRAKELIEQMSMLGLKVSAHTYNPLIRGFCKKEMFEE 295

Query: 598 ALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFS 657
           A +L   +   G    V+ YNTI+   C  GR+      ++ M    + PD  + + +  
Sbjct: 296 ANDLRREMLGRGALPTVVTYNTIMYSLCRLGRVSDARRYLDVMVNEDLMPDLVSYNTLIY 355

Query: 658 GYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           GY   G    A+     L  + L   V T
Sbjct: 356 GYSRLGNFAEALLLFSELRSKNLVPSVVT 384



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 84/190 (44%), Gaps = 5/190 (2%)

Query: 478 ISMKNLLKALGAEGMI---RELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQ 534
           +S   L+  L  +G     +ELI+        +   TYN ++    + +    A ++ ++
Sbjct: 243 VSYNVLVNGLSGKGEFDRAKELIEQMSMLGLKVSAHTYNPLIRGFCKKEMFEEANDLRRE 302

Query: 535 MKTCGIPPNAATYN-IMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYG 593
           M   G  P   TYN IM   C + R    A   + +MV +   P  ++Y  LI      G
Sbjct: 303 MLGRGALPTVVTYNTIMYSLCRLGRV-SDARRYLDVMVNEDLMPDLVSYNTLIYGYSRLG 361

Query: 594 DFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCH 653
           +F EAL L   +  + +   V+ YNT++   C  G +D+ + + + M ++ + PD  T  
Sbjct: 362 NFAEALLLFSELRSKNLVPSVVTYNTLIDGGCRTGNLDIAKGMKDDMIKHGLCPDVVTFT 421

Query: 654 FVFSGYVNCG 663
            +  G+   G
Sbjct: 422 ILVRGFCQMG 431



 Score = 62.8 bits (151), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 75/370 (20%), Positives = 145/370 (39%), Gaps = 24/370 (6%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
            E++   M    ++P+  T++  + +   +  +   +EVL +M+     P D +   L  
Sbjct: 191 VEEVYSVMIKCQIRPTIVTFNTMMDSRCKEGEVGRAVEVLDVMRMFGCDPNDVSYNVLVN 250

Query: 372 ECSKALELDLAEALLDQISRC---TNPKPFSAFLAACDTMDKPERAIKIFAKM--RQKLR 426
             S   E D A+ L++Q+S      +   ++  +      +  E A  +  +M  R  L 
Sbjct: 251 GLSGKGEFDRAKELIEQMSMLGLKVSAHTYNPLIRGFCKKEMFEEANDLRREMLGRGAL- 309

Query: 427 PDIRTYE-LLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLK 485
           P + TY  +++SL               +V  A+R   +   M   ++    +S   L+ 
Sbjct: 310 PTVVTYNTIMYSLC-----------RLGRVSDARRYLDV---MVNEDLMPDLVSYNTLIY 355

Query: 486 ALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPP 542
                G   E +  F + ++    P   TYNT++           A  +   M   G+ P
Sbjct: 356 GYSRLGNFAEALLLFSELRSKNLVPSVVTYNTLIDGGCRTGNLDIAKGMKDDMIKHGLCP 415

Query: 543 NAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL 602
           +  T+ I++     +     A  L   M+  G  P  + YT  I   L  G+  +A  + 
Sbjct: 416 DVVTFTILVRGFCQMGNLPMAKELFDEMLSRGLKPDCIAYTTRIVGELKLGNPSKAFGMK 475

Query: 603 DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNC 662
           + +  EG P D++ YN ++   C+ G  D    ++++M    + PD  T   +   ++  
Sbjct: 476 EEMKAEGFPPDLITYNVLINGLCKLGNFDDANELVQKMRLEGIVPDHVTYTSIIHAHLIS 535

Query: 663 GFHNSAMEAL 672
           G    A E  
Sbjct: 536 GLLRKAEEVF 545



 Score = 50.4 bits (119), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 69/328 (21%), Positives = 133/328 (40%), Gaps = 22/328 (6%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y  +M +LC+ G + +A   +  +     + P L  YN+ +   ++L +   A L    +
Sbjct: 315 YNTIMYSLCRLGRVSDARRYLDVMVNE-DLMPDLVSYNTLIYGYSRLGNFAEALLLFSEL 373

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH-YSLSIFSLRKFVWSFTRLRDL 243
            S+ +  + VTY  L+       NL     + +D IKH     + +    V  F ++ +L
Sbjct: 374 RSKNLVPSVVTYNTLIDGGCRTGNLDIAKGMKDDMIKHGLCPDVVTFTILVRGFCQMGNL 433

Query: 244 KSAYETLQHMVALAMMGK--LYINRTSEGRLRSSRLDIPIPLNALPVMKVLR-------- 293
             A E    M++  +      Y  R          L +  P  A  + + ++        
Sbjct: 434 PMAKELFDEMLSRGLKPDCIAYTTRI------VGELKLGNPSKAFGMKEEMKAEGFPPDL 487

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
            +++ +I+   +  N   A +L+ +M+  G+ P   TY   I A +    LR   EV   
Sbjct: 488 ITYNVLINGLCKLGNFDDANELVQKMRLEGIVPDHVTYTSIIHAHLISGLLRKAEEVFSD 547

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI-SRCTNPK--PFSAFLAACDTMDK 410
           M +  + P   T   L    +    LD A+   D++  +  +P    ++A +      + 
Sbjct: 548 MLKKGIHPSVVTYTVLIHSYAVRGRLDFAKKYFDEMQDKGVSPNVITYNALIYGLCKENM 607

Query: 411 PERAIKIFAKMRQK-LRPDIRTYELLFS 437
            + A  +FA+M  K + P+  TY +L +
Sbjct: 608 MDVAYNLFAEMESKGVSPNKYTYTILIN 635



 Score = 38.9 bits (89), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 31/170 (18%), Positives = 72/170 (42%), Gaps = 2/170 (1%)

Query: 491 GMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIM 550
           G++  L+   C   + +     + ++    +     + + +F +M   G+ P+    N +
Sbjct: 119 GVLDVLVGIGCGRNSEVSVKLLDLLIQVFAKKLILEKCLMVFYKMVNNGLLPDVRNCNRV 178

Query: 551 IDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGI 610
           +              + S+M++    P  +T+  ++      G+   A+ +LD++ + G 
Sbjct: 179 LKLLKDKSMVNEVEEVYSVMIKCQIRPTIVTFNTMMDSRCKEGEVGRAVEVLDVMRMFGC 238

Query: 611 -PHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
            P+DV  YN ++     KG  D  + +IEQM    ++    T + +  G+
Sbjct: 239 DPNDV-SYNVLVNGLSGKGEFDRAKELIEQMSMLGLKVSAHTYNPLIRGF 287


>gi|125548475|gb|EAY94297.1| hypothetical protein OsI_16066 [Oryza sativa Indica Group]
          Length = 602

 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 80/166 (48%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TYN ++H+L E  +   A+ +   M   G  P+  TYNI+++     R ++ A  L+ +M
Sbjct: 169 TYNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAMELIDLM 228

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
             +G  P  +TY  L+  +   GD D+AL LL  +   G     + YNT+LK  C   R 
Sbjct: 229 RAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGLCSAERW 288

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
              + ++ +M +    P+ +T + V       G    A++ L+ +S
Sbjct: 289 GDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMS 334



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 88/374 (23%), Positives = 152/374 (40%), Gaps = 56/374 (14%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A +L+  + S G +PS+  Y+  ++ + S     +  E++  M + N  P ++T   +  
Sbjct: 256 ALELLRNLPSHGCKPSTVNYNTVLKGLCSAERWGDADELVTEMLRENCPPNEATFNVVIY 315

Query: 372 E-CSKALELDLAEALLDQISR--CT-NPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLR 426
             C K L L  A  LL+++S+  CT N   ++A +         + A+ + +KM+    +
Sbjct: 316 SLCRKGL-LQQAIQLLEKMSKHGCTANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCK 374

Query: 427 PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM--DMARNNIQHSHISMKNLL 484
           PDI TY  L                     +A+ ++A E+  +M +N     +++   L+
Sbjct: 375 PDIVTYNTLLKGL---------------CSAAQWVDAEELMDNMTQNGCLPDNVTFNTLI 419

Query: 485 KALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNA 544
             L  +G++ +                                A+E+FKQM   G  PN+
Sbjct: 420 GFLCQKGLMVD--------------------------------AIEVFKQMPDKGCTPNS 447

Query: 545 ATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDL 604
            TY+ +I   +       A  L + M   GF P  + Y  L + L D    +EA+  +  
Sbjct: 448 ITYSTIISGLAKATKLDQALELFNEMGHKGFNPDKI-YQLLAECLNDDDTIEEAIQTVRK 506

Query: 605 VSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGF 664
           +   GI    +LYN IL   C  G+ +    I+  M  +   PD  T   +  G    G+
Sbjct: 507 LQDSGISPHTVLYNAILLGLCRNGKTEFAIDIMAYMVSSGCMPDDLTYVILIEGLAYEGY 566

Query: 665 HNSAMEALQVLSMR 678
            N A E L  L  R
Sbjct: 567 LNEARELLIKLCSR 580



 Score = 72.8 bits (177), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 66/256 (25%), Positives = 108/256 (42%), Gaps = 28/256 (10%)

Query: 427 PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM-DMAR-NNIQHSHISMKNLL 484
           PD+ TY +L            +G  + Q        A+E+ D+ R      ++++   L+
Sbjct: 200 PDVVTYNILLEATC-------KGRGYRQ--------AMELIDLMRAEGCTPNNVTYNVLM 244

Query: 485 KALGAEG-------MIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKT 537
             +  EG       ++R L  + C   T      YNTVL  L  A+    A E+  +M  
Sbjct: 245 DGMCGEGDVDDALELLRNLPSHGCKPSTV----NYNTVLKGLCSAERWGDADELVTEMLR 300

Query: 538 CGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDE 597
              PPN AT+N++I         + A  L+  M + G     +TY A+I  L +  + D 
Sbjct: 301 ENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLCEQRNVDG 360

Query: 598 ALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFS 657
           A+ LL  +   G   D++ YNT+LK  C   +    E +++ M QN   PD  T + +  
Sbjct: 361 AMGLLSKMKSYGCKPDIVTYNTLLKGLCSAAQWVDAEELMDNMTQNGCLPDNVTFNTLIG 420

Query: 658 GYVNCGFHNSAMEALQ 673
                G    A+E  +
Sbjct: 421 FLCQKGLMVDAIEVFK 436



 Score = 46.6 bits (109), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 104/459 (22%), Positives = 175/459 (38%), Gaps = 66/459 (14%)

Query: 108 ETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGA 167
           +  R++    +  N   Y  ++  LC+ G + +A +++  +  R G  P +  YN  L A
Sbjct: 153 DARRVVGGMPVQPNAYTYNPLIHTLCERGQVRDALSVLDDMLCR-GCAPDVVTYNILLEA 211

Query: 168 CAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH----Y 223
             K      A   +DLM +     N VTY  L+     + ++    E+  +   H     
Sbjct: 212 TCKGRGYRQAMELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPS 271

Query: 224 SLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPL 283
           +++  ++ K + S  R  D   A E +  M                  LR +      P 
Sbjct: 272 TVNYNTVLKGLCSAERWGD---ADELVTEM------------------LREN-----CPP 305

Query: 284 NALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRG 343
           N          +F+ VI++  R      A QL+ +M   G   +  TY+  I  +   R 
Sbjct: 306 N--------EATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLCEQRN 357

Query: 344 LRNGMEVLKIMQQNNLKPQDSTIATL-SVECSKALELDLAEALLDQISR--C-TNPKPFS 399
           +   M +L  M+    KP   T  TL    CS A  +D AE L+D +++  C  +   F+
Sbjct: 358 VDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAAQWVD-AEELMDNMTQNGCLPDNVTFN 416

Query: 400 AFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSA 458
             +           AI++F +M  K   P+  TY  + S                   + 
Sbjct: 417 TLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAK---------------AT 461

Query: 459 KRINAIEM--DMARNNIQHSHISMKNLLKALGAEGMIRELIQY---FCDSKTPLGTPTYN 513
           K   A+E+  +M         I  + L + L  +  I E IQ      DS     T  YN
Sbjct: 462 KLDQALELFNEMGHKGFNPDKI-YQLLAECLNDDDTIEEAIQTVRKLQDSGISPHTVLYN 520

Query: 514 TVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID 552
            +L  L    ++  A++I   M + G  P+  TY I+I+
Sbjct: 521 AILLGLCRNGKTEFAIDIMAYMVSSGCMPDDLTYVILIE 559



 Score = 45.4 bits (106), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 65/151 (43%), Gaps = 7/151 (4%)

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDC-CSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
           R  +  + +  CG       Y  + D  C   R   +   +  M V+    P   TY  L
Sbjct: 118 RPDDAERVVGACGPAATVVAYGALTDGYCRAGRLGDARRVVGGMPVQ----PNAYTYNPL 173

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE-KGRIDVIEFIIEQMHQNK 644
           I  L + G   +AL++LD +   G   DV+ YN +L+  C+ +G    +E +I+ M    
Sbjct: 174 IHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAME-LIDLMRAEG 232

Query: 645 VQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
             P+  T + +  G    G  + A+E L+ L
Sbjct: 233 CTPNNVTYNVLMDGMCGEGDVDDALELLRNL 263


>gi|359474464|ref|XP_003631475.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Vitis vinifera]
 gi|297742067|emb|CBI33854.3| unnamed protein product [Vitis vinifera]
          Length = 767

 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 87/424 (20%), Positives = 170/424 (40%), Gaps = 59/424 (13%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           + ++ +IH   +      A +++ +M+S G+ P  +TY   I        +  G+ +++ 
Sbjct: 326 YCYNAIIHGLCKKGELDEALKVLEEMKSCGISPDVYTYSILIHGFCKQGDVEKGLYLIEE 385

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT---NPKPFSAFLAACDTMDK 410
           M+ +N++P   + ++L     K    D++  +   +       +   +S  +        
Sbjct: 386 MKYSNMEPSLVSYSSLFHGLCKKRLSDISLDIFRDLGAAGYKYDQTAYSILIKGFCMQGD 445

Query: 411 PERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM--D 467
            + A K+  +M R  L PD   +E L   F  +                  +NA+E    
Sbjct: 446 LDSAHKLMEEMVRNNLAPDPSNFESLVHGFCKMGL---------------WVNALEFFNM 490

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQE 524
           M    I  S  +   ++ A   EG + E +    + +T    P   TYN V++ L + ++
Sbjct: 491 MLEGGILPSIATCNVIIDAHCREGRVEEALNLMNEMQTQGIFPNLFTYNAVINRLCKERK 550

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
           S RA+E+F  M    + P+   Y+ +ID  +     + A  L + M++ G  P  + YT 
Sbjct: 551 SERALELFPLMLKRNVLPSVVVYSTLIDGFAKQSNSQKALMLYARMLKIGVTPDMVAYTI 610

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHD------------------------------- 613
           LI IL       EA NL   ++  G+  D                               
Sbjct: 611 LINILCHRSRMCEAYNLFKKMTENGMTPDKISYTSVIAGFCRIGDMRKAWALFNEMLQRG 670

Query: 614 ----VLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAM 669
               V+ Y +++   C+  RID+ + +I++M +  + PD  T + + + +   G  + A+
Sbjct: 671 HLPTVVTYTSLVDGYCKMNRIDIADMLIDEMKRKGITPDVVTYNVLIAAHRRRGNLDKAL 730

Query: 670 EALQ 673
           E L 
Sbjct: 731 EMLN 734



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/253 (22%), Positives = 115/253 (45%), Gaps = 12/253 (4%)

Query: 427 PDIRTYELLFSLFGNVNAPYEEGNMFSQVD-SAKRINAIEMDMARNNIQHSHISMKNLLK 485
           P++ TY ++ +        Y +GN F + D   ++   I  +M RN    + ++    + 
Sbjct: 247 PNVFTYTIMMNF-------YCKGN-FGEADIDTRQATEILEEMERNGESPTVVTYSTYIY 298

Query: 486 ALGAEGMIR---ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPP 542
            L   G +    + ++    +   +    YN ++H L +  E   A+++ ++MK+CGI P
Sbjct: 299 GLCRVGYVESALDFVRSLISANGLVNVYCYNAIIHGLCKKGELDEALKVLEEMKSCGISP 358

Query: 543 NAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL 602
           +  TY+I+I         +    L+  M      P  ++Y++L   L      D +L++ 
Sbjct: 359 DVYTYSILIHGFCKQGDVEKGLYLIEEMKYSNMEPSLVSYSSLFHGLCKKRLSDISLDIF 418

Query: 603 DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNC 662
             +   G  +D   Y+ ++K  C +G +D    ++E+M +N + PDPS    +  G+   
Sbjct: 419 RDLGAAGYKYDQTAYSILIKGFCMQGDLDSAHKLMEEMVRNNLAPDPSNFESLVHGFCKM 478

Query: 663 GFHNSAMEALQVL 675
           G   +A+E   ++
Sbjct: 479 GLWVNALEFFNMM 491



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 75/370 (20%), Positives = 149/370 (40%), Gaps = 32/370 (8%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           S+S + H   + + S ++  +   + + G +     Y   I+       L +  ++++ M
Sbjct: 397 SYSSLFHGLCKKRLSDISLDIFRDLGAAGYKYDQTAYSILIKGFCMQGDLDSAHKLMEEM 456

Query: 355 QQNNLKPQDSTIATLS---------VECSKALELDLAEALLDQISRCTNPKPFSAFLAAC 405
            +NNL P  S   +L          V   +   + L   +L  I+ C      +  + A 
Sbjct: 457 VRNNLAPDPSNFESLVHGFCKMGLWVNALEFFNMMLEGGILPSIATC------NVIIDAH 510

Query: 406 DTMDKPERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAI 464
               + E A+ +  +M+ Q + P++ TY  +              N   +   ++R   +
Sbjct: 511 CREGRVEEALNLMNEMQTQGIFPNLFTYNAVI-------------NRLCKERKSERALEL 557

Query: 465 EMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVE 521
              M + N+  S +    L+     +   ++ +  +        TP    Y  +++ L  
Sbjct: 558 FPLMLKRNVLPSVVVYSTLIDGFAKQSNSQKALMLYARMLKIGVTPDMVAYTILINILCH 617

Query: 522 AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMT 581
                 A  +FK+M   G+ P+  +Y  +I     I   + A AL + M++ G  P  +T
Sbjct: 618 RSRMCEAYNLFKKMTENGMTPDKISYTSVIAGFCRIGDMRKAWALFNEMLQRGHLPTVVT 677

Query: 582 YTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMH 641
           YT+L+         D A  L+D +  +GI  DV+ YN ++     +G +D    ++ +M 
Sbjct: 678 YTSLVDGYCKMNRIDIADMLIDEMKRKGITPDVVTYNVLIAAHRRRGNLDKALEMLNEMK 737

Query: 642 QNKVQPDPST 651
           +N V PD  T
Sbjct: 738 ENGVLPDHMT 747



 Score = 66.2 bits (160), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 125/618 (20%), Positives = 238/618 (38%), Gaps = 131/618 (21%)

Query: 10  FQLIADSFCKSKFHKHE--RRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCR-G 66
           + ++ + +CK  F + +   R     LE        M  N ES +  T    +  LCR G
Sbjct: 252 YTIMMNFYCKGNFGEADIDTRQATEILE-------EMERNGESPTVVTYSTYIYGLCRVG 304

Query: 67  ERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEE-KEIGLNNKCY 125
               A   + +L  A+  +    +  I++   +  +   + E  +++EE K  G++   Y
Sbjct: 305 YVESALDFVRSLISANGLVNVYCYNAIIHGLCKKGE---LDEALKVLEEMKSCGISPDVY 361

Query: 126 L--LMMQALCKGGYLEEASNLIYFLGE-RYG-IYPILPVYNS-FLGACAKLHSMVHANLC 180
              +++   CK G +E+    +Y + E +Y  + P L  Y+S F G C K  S +  ++ 
Sbjct: 362 TYSILIHGFCKQGDVEKG---LYLIEEMKYSNMEPSLVSYSSLFHGLCKKRLSDISLDIF 418

Query: 181 LDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRL 240
            DL  +     ++  Y+ L+K    Q +L + H++ E+ +++                 L
Sbjct: 419 RDL-GAAGYKYDQTAYSILIKGFCMQGDLDSAHKLMEEMVRN----------------NL 461

Query: 241 RDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVI 300
               S +E+L H      MG L++N            ++ +    LP +     + + +I
Sbjct: 462 APDPSNFESLVH--GFCKMG-LWVNALE-------FFNMMLEGGILPSIA----TCNVII 507

Query: 301 HACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLK 360
            A  R      A  LM +MQ+ G+ P+  TY+  I  +  +R     +E+  +M + N+ 
Sbjct: 508 DAHCREGRVEEALNLMNEMQTQGIFPNLFTYNAVINRLCKERKSERALELFPLMLKRNVL 567

Query: 361 PQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAK 420
           P     +TL                +D  ++ +N                 ++A+ ++A+
Sbjct: 568 PSVVVYSTL----------------IDGFAKQSNS----------------QKALMLYAR 595

Query: 421 M-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHIS 479
           M +  + PD+  Y +L ++  + +   E  N+F +             M  N +    IS
Sbjct: 596 MLKIGVTPDMVAYTILINILCHRSRMCEAYNLFKK-------------MTENGMTPDKIS 642

Query: 480 MKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCG 539
                                           Y +V+       +  +A  +F +M   G
Sbjct: 643 --------------------------------YTSVIAGFCRIGDMRKAWALFNEMLQRG 670

Query: 540 IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEAL 599
             P   TY  ++D    +     A  L+  M R G  P  +TY  LI      G+ D+AL
Sbjct: 671 HLPTVVTYTSLVDGYCKMNRIDIADMLIDEMKRKGITPDVVTYNVLIAAHRRRGNLDKAL 730

Query: 600 NLLDLVSLEGIPHDVLLY 617
            +L+ +   G+  D + Y
Sbjct: 731 EMLNEMKENGVLPDHMTY 748



 Score = 65.9 bits (159), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 93/224 (41%), Gaps = 52/224 (23%)

Query: 483 LLKALGAEGMIRELIQYFCDSKTP---LGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCG 539
           L+K   A  M+   +  F  +K     L T + N +L  L EA        +F++MK+ G
Sbjct: 185 LIKVFAANSMLENAVDVFLQAKKTGLELSTRSCNFLLKCLAEANRREFLRSLFEEMKSTG 244

Query: 540 IPPNAATYNIMIDCCSIIRC----------FKSASALVSMMVRDGFYPQTMTYT------ 583
            PPN  TY IM++      C           + A+ ++  M R+G  P  +TY+      
Sbjct: 245 PPPNVFTYTIMMN----FYCKGNFGEADIDTRQATEILEEMERNGESPTVVTYSTYIYGL 300

Query: 584 -----------------------------ALIKILLDYGDFDEALNLLDLVSLEGIPHDV 614
                                        A+I  L   G+ DEAL +L+ +   GI  DV
Sbjct: 301 CRVGYVESALDFVRSLISANGLVNVYCYNAIIHGLCKKGELDEALKVLEEMKSCGISPDV 360

Query: 615 LLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
             Y+ ++   C++G ++   ++IE+M  + ++P   +   +F G
Sbjct: 361 YTYSILIHGFCKQGDVEKGLYLIEEMKYSNMEPSLVSYSSLFHG 404


>gi|224713522|gb|ACN62068.1| PPR-814b [Zea mays]
          Length = 814

 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 86/407 (21%), Positives = 164/407 (40%), Gaps = 57/407 (14%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           ++S V+HA  + +    AE  + QM + G+ P++ TY+  I    S    +  + V K M
Sbjct: 256 TYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEM 315

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQIS-RCTNPKPFSAFL----------- 402
           +++++ P   T++ L     K  ++  A  + D ++ +  NP  FS  +           
Sbjct: 316 RRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPNVFSYTIMLNGYATKGCL 375

Query: 403 -----------------------------AACDTMDKPERAIKIFAKMR-QKLRPDIRTY 432
                                        A C  +DK   A+ IF +MR   ++PD+ TY
Sbjct: 376 VDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDK---AMIIFNEMRDHGVKPDVVTY 432

Query: 433 ELLFSLFGNVNAPYEEGNMFSQ-VDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEG 491
             + +    +    +    F+Q +D     +      A + +     +  +LLKA     
Sbjct: 433 RTVIAALCRIGKMDDAMEKFNQMIDQGVAPD----KYAYHCLIQGFCTHGSLLKA----- 483

Query: 492 MIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI 551
             +ELI    ++   L    +++++++L +      A  IF      G+ P A  Y++++
Sbjct: 484 --KELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLM 541

Query: 552 DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIP 611
           D   ++   + A  +   MV  G  P  + Y  L+      G  DE L+L   +  +GI 
Sbjct: 542 DGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIK 601

Query: 612 HDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
              +LYN I+    E GR    +    +M ++ +  +  T + V  G
Sbjct: 602 PSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYNIVLRG 648



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/268 (23%), Positives = 116/268 (43%), Gaps = 20/268 (7%)

Query: 413 RAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471
           +A  +F +M Q+ + PD  TY  +        A          +D A+   A    M   
Sbjct: 237 KACDLFKEMVQRGIPPDFVTYSSVVHALCKARA----------MDKAE---AFLRQMVNK 283

Query: 472 NIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRA 528
            +  ++ +  NL+    + G  +E ++ F + +     P   T + ++ SL +  +   A
Sbjct: 284 GVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEA 343

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
            ++F  M   G  PN  +Y IM++  +   C    + L  +M+ DG  P   T+  LIK 
Sbjct: 344 RDVFDTMAMKGQNPNVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKA 403

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
             + G  D+A+ + + +   G+  DV+ Y T++   C  G++D       QM    V PD
Sbjct: 404 YANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPD 463

Query: 649 PSTCHFVFSGYVNCGFHNSAMEALQVLS 676
               H +  G+     H S ++A +++S
Sbjct: 464 KYAYHCLIQGFCT---HGSLLKAKELIS 488



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 73/316 (23%), Positives = 135/316 (42%), Gaps = 13/316 (4%)

Query: 359 LKPQDSTIATLSVECSKALELDLAEALLDQISRC---TNPKPFSAFLAACDTMDKPERAI 415
           L P   T A L   C++A   +LA A   Q+ R     N    +  L       + + A+
Sbjct: 107 LSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLKGFCEAKRTDEAL 166

Query: 416 KIFAKMRQKLR--PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNI 473
            I      +L   PD+ +Y +L     +     +  ++   +     + + ++ +A + +
Sbjct: 167 DILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDV-VAYSTV 225

Query: 474 QHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFK 533
                   ++ KA     + +E++Q       P    TY++V+H+L +A+   +A    +
Sbjct: 226 IDGFFKEGDVNKACD---LFKEMVQ----RGIPPDFVTYSSVVHALCKARAMDKAEAFLR 278

Query: 534 QMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYG 593
           QM   G+ PN  TYN +I   S    +K A  +   M R    P  +T + L+  L  YG
Sbjct: 279 QMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYG 338

Query: 594 DFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCH 653
              EA ++ D ++++G   +V  Y  +L     KG +  +  + + M  + + PD  T +
Sbjct: 339 KIKEARDVFDTMAMKGQNPNVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFN 398

Query: 654 FVFSGYVNCGFHNSAM 669
            +   Y NCG  + AM
Sbjct: 399 VLIKAYANCGMLDKAM 414



 Score = 76.6 bits (187), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 78/392 (19%), Positives = 151/392 (38%), Gaps = 24/392 (6%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLG--LQPSSHTYDGFIRAIVSDRGLRNGMEVL 351
           +S+S ++ +      SG A+ L+  M   G    P    Y   I     +  +    ++ 
Sbjct: 183 FSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYSTVIDGFFKEGDVNKACDLF 242

Query: 352 KIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPK--PFSAFLAACDTM 408
           K M Q  + P   T +++     KA  +D AEA L Q +++   P    ++  +    + 
Sbjct: 243 KEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSST 302

Query: 409 DKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMD 467
            + + A+++F +MR+  + PD+ T  +L           E  ++F               
Sbjct: 303 GQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDT------------- 349

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRELIQYF----CDSKTPLGTPTYNTVLHSLVEAQ 523
           MA      +  S   +L     +G + ++   F     D   P    T+N ++ +     
Sbjct: 350 MAMKGQNPNVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAP-DIYTFNVLIKAYANCG 408

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
              +AM IF +M+  G+ P+  TY  +I     I     A    + M+  G  P    Y 
Sbjct: 409 MLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYH 468

Query: 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
            LI+    +G   +A  L+  +   G+  D++ +++I+   C+ GR+   + I +     
Sbjct: 469 CLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNV 528

Query: 644 KVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
            + P       +  GY   G    A+     +
Sbjct: 529 GLHPTAVVYSMLMDGYCLVGKMEKALRVFDAM 560



 Score = 58.9 bits (141), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 110/542 (20%), Positives = 212/542 (39%), Gaps = 38/542 (7%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y  ++    K G + +A +L   + +R GI P    Y+S + A  K  +M  A   L  M
Sbjct: 222 YSTVIDGFFKEGDVNKACDLFKEMVQR-GIPPDFVTYSSVVHALCKARAMDKAEAFLRQM 280

Query: 185 DSRMVGKNEVTYTELL----KLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRL 240
            ++ V  N  TY  L+        W++ +    E+    I    +++  L   +  + ++
Sbjct: 281 VNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKI 340

Query: 241 RDLKSAYETLQ------HMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRW 294
           ++ +  ++T+       ++ +  +M   Y  +     + +   D+ +     P +    +
Sbjct: 341 KEARDVFDTMAMKGQNPNVFSYTIMLNGYATKGCLVDM-TDLFDLMLGDGIAPDI----Y 395

Query: 295 SFSDVIHACGRTQNSGLAEQLML---QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVL 351
           +F+ +I A     N G+ ++ M+   +M+  G++P   TY   I A+     + + ME  
Sbjct: 396 TFNVLIKA---YANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKF 452

Query: 352 KIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKP 411
             M    + P       L         L  A+ L+ +I           F +  + + K 
Sbjct: 453 NQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKL 512

Query: 412 ER---AIKIF-AKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM- 466
            R   A  IF   +   L P    Y +L   +  V    +   +F  + SA     IE  
Sbjct: 513 GRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSA----GIEPN 568

Query: 467 DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESH 526
           D+    + + +  +  + + L    + RE++Q      T L    YN ++  L EA  + 
Sbjct: 569 DVVYGTLVNGYCKIGRIDEGLS---LFREMLQKGIKPSTIL----YNIIIDGLFEAGRTV 621

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
            A   F +M   GI  N  TYNI++      RCF  A  L   +         +T   +I
Sbjct: 622 PAKVKFHEMTESGIAMNKCTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMI 681

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
             +      +EA +L   +S  G+   V+ Y+ ++    ++G ++  E +   M     +
Sbjct: 682 AGMFQTRRVEEAKDLFASISRSGLVPCVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCE 741

Query: 647 PD 648
           PD
Sbjct: 742 PD 743



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 82/180 (45%), Gaps = 7/180 (3%)

Query: 513 NTVLHSLVEAQESHRAMEIF-KQMKTCGIPPNAATYNIMIDCCSIIRCFKSASA--LVSM 569
           N +L    EA+ +  A++I   +    G  P+  +Y+I++   S+    KS  A  L+ M
Sbjct: 150 NHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLK--SLCDQGKSGQADDLLRM 207

Query: 570 MVRDGFY--PQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEK 627
           M   G    P  + Y+ +I      GD ++A +L   +   GIP D + Y++++   C+ 
Sbjct: 208 MAEGGAVCSPDVVAYSTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKA 267

Query: 628 GRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTL 687
             +D  E  + QM    V P+  T + +  GY + G    A+   + +    +  +V TL
Sbjct: 268 RAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTL 327



 Score = 47.8 bits (112), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 71/342 (20%), Positives = 120/342 (35%), Gaps = 81/342 (23%)

Query: 382 AEALLDQISRCTNP---KPFSAFLAA-------CDTMDKPERAIKIF------AKMRQKL 425
           A  LLD++ R   P   +  + FLAA             P  A+ +F      A+  + L
Sbjct: 48  AHDLLDELQRRGTPVLERDLNGFLAALARAPSSAACRSGPALAVALFNRAASRAQGPRVL 107

Query: 426 RPDIRTYELLFSLFGNVNAPYEEGNMFSQV-DSAKRINAI-------------EMDMARN 471
            P   TY +L       + P      F Q+  +  R+N I               D A +
Sbjct: 108 SPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLKGFCEAKRTDEALD 167

Query: 472 NIQHSH---------ISMKNLLKAL---GAEGMIRELIQYFCDSKTPLGTP---TYNTVL 516
            + H            S   LLK+L   G  G   +L++   +    + +P    Y+TV+
Sbjct: 168 ILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGA-VCSPDVVAYSTVI 226

Query: 517 HSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFY 576
               +  + ++A ++FK+M   GIPP+  TY+ ++      R    A A +  MV  G  
Sbjct: 227 DGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVL 286

Query: 577 PQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFI 636
           P   TY  LI      G + EA+                                    +
Sbjct: 287 PNNWTYNNLIYGYSSTGQWKEAVR-----------------------------------V 311

Query: 637 IEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678
            ++M ++ + PD  T   +       G    A +    ++M+
Sbjct: 312 FKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMK 353


>gi|225464138|ref|XP_002265372.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46100
           [Vitis vinifera]
 gi|296087974|emb|CBI35257.3| unnamed protein product [Vitis vinifera]
          Length = 503

 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 83/326 (25%), Positives = 142/326 (43%), Gaps = 32/326 (9%)

Query: 357 NNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDT---MDKPER 413
           N  +    T + +      A    LAE LL ++           FL+ C     + KP  
Sbjct: 44  NGFRHSHQTFSLMISRLVSANHFRLAEELLCRMKEEKCNITEDIFLSICRAYGRVHKPLD 103

Query: 414 AIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNN 472
           A+++F KM++ +  P  ++Y  +F++    N          Q+  A R      +M    
Sbjct: 104 AVRVFRKMKEYECEPSQKSYITVFAILVGEN----------QLKLALRFYRYMREMG--- 150

Query: 473 IQHSHISMKNLLKAL--------GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQE 524
           I  S  S+  L+KAL         A  + RE+    C    P  + TY T+++ L    +
Sbjct: 151 IPPSVASLNVLIKALCKNSGTMDAALRIFREMPNRGC----PPDSYTYGTLINGLCRLGK 206

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
              A E+FK+M+T    P   TY  +I      +   SA  L+  M   G  P   TY++
Sbjct: 207 IGEAKELFKEMETKACSPTVVTYTSLIHGLCQSKDLDSAIRLLEEMASKGIKPNVFTYSS 266

Query: 585 LIKILLDYGDFDEALNLLD-LVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
           L+      G    AL LLD +VS   +P +++ Y+T++   C++G++     I+++M   
Sbjct: 267 LMDGHCKSGCSSRALELLDMMVSRRHLP-NMITYSTLVHGLCKEGKLQEAVEILDRMKLQ 325

Query: 644 KVQPDPSTCHFVFSGYVN-CGFHNSA 668
            ++PD      + SG+ + C FH +A
Sbjct: 326 GLRPDAGLYGKIISGFCDICKFHEAA 351



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 80/378 (21%), Positives = 158/378 (41%), Gaps = 27/378 (7%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           F  +  A GR      A ++  +M+    +PS  +Y      +V +  L+  +   + M+
Sbjct: 88  FLSICRAYGRVHKPLDAVRVFRKMKEYECEPSQKSYITVFAILVGENQLKLALRFYRYMR 147

Query: 356 QNNLKPQDSTIATL-SVECSKALELDLAEALLDQI-SRCTNPKPFS--AFLAACDTMDKP 411
           +  + P  +++  L    C  +  +D A  +  ++ +R   P  ++    +     + K 
Sbjct: 148 EMGIPPSVASLNVLIKALCKNSGTMDAALRIFREMPNRGCPPDSYTYGTLINGLCRLGKI 207

Query: 412 ERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
             A ++F +M  K   P + TY  L  + G   +          +DSA R+  +E +MA 
Sbjct: 208 GEAKELFKEMETKACSPTVVTYTSL--IHGLCQS--------KDLDSAIRL--LE-EMAS 254

Query: 471 NNIQHSHISMKNLLKA---LGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHR 527
             I+ +  +  +L+      G      EL+      +      TY+T++H L +  +   
Sbjct: 255 KGIKPNVFTYSSLMDGHCKSGCSSRALELLDMMVSRRHLPNMITYSTLVHGLCKEGKLQE 314

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A+EI  +MK  G+ P+A  Y  +I     I  F  A+  +  MV  G  P  +T++  ++
Sbjct: 315 AVEILDRMKLQGLRPDAGLYGKIISGFCDICKFHEAANFLDEMVLGGISPNRLTWSLHVR 374

Query: 588 I--LLDYGDFDE----ALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMH 641
           I  ++  G   E    A  L   +   GI  D   +++++   C KG +     ++++M 
Sbjct: 375 IHNIVVQGLCTEHPNRAFQLYLSMRTRGISIDAKTFDSLVNYFCNKGDLHKAAHLVDEMV 434

Query: 642 QNKVQPDPSTCHFVFSGY 659
            +   PD  T + V   +
Sbjct: 435 LDGCIPDEVTWNAVVCAF 452



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 65/316 (20%), Positives = 128/316 (40%), Gaps = 45/316 (14%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           +++  +I+   R    G A++L  +M++    P+  TY   I  +   + L + + +L+ 
Sbjct: 192 YTYGTLINGLCRLGKIGEAKELFKEMETKACSPTVVTYTSLIHGLCQSKDLDSAIRLLEE 251

Query: 354 MQQNNLKPQDSTIATL-SVECSKALELDLAEALLDQISRCTNPK--PFSAFLAACDTMDK 410
           M    +KP   T ++L    C         E L   +SR   P    +S  +       K
Sbjct: 252 MASKGIKPNVFTYSSLMDGHCKSGCSSRALELLDMMVSRRHLPNMITYSTLVHGLCKEGK 311

Query: 411 PERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
            + A++I  +M+ Q LRPD   Y  + S F ++   +E  N   ++        +   ++
Sbjct: 312 LQEAVEILDRMKLQGLRPDAGLYGKIISGFCDICKFHEAANFLDEM--------VLGGIS 363

Query: 470 RNNIQHS-HISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRA 528
            N +  S H+ + N+            ++Q  C                     +  +RA
Sbjct: 364 PNRLTWSLHVRIHNI------------VVQGLC--------------------TEHPNRA 391

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
            +++  M+T GI  +A T++ +++          A+ LV  MV DG  P  +T+ A++  
Sbjct: 392 FQLYLSMRTRGISIDAKTFDSLVNYFCNKGDLHKAAHLVDEMVLDGCIPDEVTWNAVVCA 451

Query: 589 LLDYGDFDEALNLLDL 604
             D     E+  L+ +
Sbjct: 452 FWDRRKVRESAELVQV 467



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/260 (21%), Positives = 112/260 (43%), Gaps = 11/260 (4%)

Query: 439 FGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQ 498
           +G V+ P +   +F      +++   E + +    Q S+I++  +L       +     +
Sbjct: 95  YGRVHKPLDAVRVF------RKMKEYECEPS----QKSYITVFAILVGENQLKLALRFYR 144

Query: 499 YFCDSKTPLGTPTYNTVLHSLVEAQES-HRAMEIFKQMKTCGIPPNAATYNIMIDCCSII 557
           Y  +   P    + N ++ +L +   +   A+ IF++M   G PP++ TY  +I+    +
Sbjct: 145 YMREMGIPPSVASLNVLIKALCKNSGTMDAALRIFREMPNRGCPPDSYTYGTLINGLCRL 204

Query: 558 RCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLY 617
                A  L   M      P  +TYT+LI  L    D D A+ LL+ ++ +GI  +V  Y
Sbjct: 205 GKIGEAKELFKEMETKACSPTVVTYTSLIHGLCQSKDLDSAIRLLEEMASKGIKPNVFTY 264

Query: 618 NTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSM 677
           ++++   C+ G       +++ M   +  P+  T   +  G    G    A+E L  + +
Sbjct: 265 SSLMDGHCKSGCSSRALELLDMMVSRRHLPNMITYSTLVHGLCKEGKLQEAVEILDRMKL 324

Query: 678 RMLCEEVSTLEEKRSDFEDL 697
           + L  +     +  S F D+
Sbjct: 325 QGLRPDAGLYGKIISGFCDI 344



 Score = 43.5 bits (101), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 76/382 (19%), Positives = 144/382 (37%), Gaps = 42/382 (10%)

Query: 71  ASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQ 130
           A  LL  +     ++  D F  I     R   PL  +  +R M+E E   + K Y+ +  
Sbjct: 69  AEELLCRMKEEKCNITEDIFLSICRAYGRVHKPLDAVRVFRKMKEYECEPSQKSYITVFA 128

Query: 131 ALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGA-CAKLHSMVHANLCLDLMDSRMV 189
            L     L+ A     ++ E  GI P +   N  + A C    +M  A      M +R  
Sbjct: 129 ILVGENQLKLALRFYRYMRE-MGIPPSVASLNVLIKALCKNSGTMDAALRIFREMPNRGC 187

Query: 190 GKNEVTYTELLKLAVWQKNLSAVHEIWEDY-IKHYSLSIFSLRKFVWSFTRLRDLKSAYE 248
             +  TY  L+        +    E++++   K  S ++ +    +    + +DL SA  
Sbjct: 188 PPDSYTYGTLINGLCRLGKIGEAKELFKEMETKACSPTVVTYTSLIHGLCQSKDLDSAIR 247

Query: 249 TLQHMVALAMMGKLYINRT-SEGRLR---SSR----LDIPIPLNALPVMKVLRWSFSDVI 300
            L+ M +  +   ++   +  +G  +   SSR    LD+ +    LP M     ++S ++
Sbjct: 248 LLEEMASKGIKPNVFTYSSLMDGHCKSGCSSRALELLDMMVSRRHLPNM----ITYSTLV 303

Query: 301 HACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLK 360
           H   +      A +++ +M+  GL+P +  Y   I               L  M    + 
Sbjct: 304 HGLCKEGKLQEAVEILDRMKLQGLRPDAGLYGKIISGFCDICKFHEAANFLDEMVLGGIS 363

Query: 361 PQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAK 420
           P   T          +L + +   ++  +  CT               + P RA +++  
Sbjct: 364 PNRLTW---------SLHVRIHNIVVQGL--CT---------------EHPNRAFQLYLS 397

Query: 421 MRQK-LRPDIRTYELLFSLFGN 441
           MR + +  D +T++ L + F N
Sbjct: 398 MRTRGISIDAKTFDSLVNYFCN 419


>gi|307103654|gb|EFN51912.1| hypothetical protein CHLNCDRAFT_59068 [Chlorella variabilis]
          Length = 1025

 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 77/308 (25%), Positives = 127/308 (41%), Gaps = 20/308 (6%)

Query: 330 TYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI 389
           TY   I    + + LR  +E++  M+   ++    T + L   C K  ELDLA  +  Q+
Sbjct: 197 TYTTMISQCGTQQQLRRALELVAEMRSRGIQCNVHTYSALMNVCIKGNELDLALDVYRQM 256

Query: 390 --SRCT-NPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAP 445
               CT N   ++  +         E AI++   + RQ + P+IRTY  +          
Sbjct: 257 LAEGCTPNLVTYNTLIDVYGKTGAWEEAIRVLDALERQGIDPEIRTYNTVIIAC------ 310

Query: 446 YEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCD--- 502
               NM  Q   A RI      M     Q +  +   L+ A G  G +   +Q F D   
Sbjct: 311 ----NMSGQAQEALRIYE---RMLAAGAQPTATTYTALISAYGKNGQLDRALQIFQDMVR 363

Query: 503 SKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKS 562
                   TY++++ +  +A     A+E+F++M T G  PN  TYN +I  C+    ++ 
Sbjct: 364 RGCERNVITYSSLISACEKAGRWELALELFREMHTEGCRPNVVTYNSLIAACAQGAQWEK 423

Query: 563 ASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILK 622
           A  +   M   G  P  +T+  LI      G +  AL   + +       D ++YNTI+ 
Sbjct: 424 AQEMFEQMQHRGCKPDAVTFGGLIAAYDRAGHWRRALTAFEQMKAHNCRPDSVVYNTIVG 483

Query: 623 KACEKGRI 630
              + G +
Sbjct: 484 ALWKTGLV 491



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 63/289 (21%), Positives = 120/289 (41%), Gaps = 35/289 (12%)

Query: 398 FSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVD 456
           ++  ++ C T  +  RA+++ A+MR + ++ ++ TY  L ++                  
Sbjct: 198 YTTMISQCGTQQQLRRALELVAEMRSRGIQCNVHTYSALMNVC----------------- 240

Query: 457 SAKRINAIEMDMARN--------NIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLG 508
               I   E+D+A +            + ++   L+   G  G   E I+   D+    G
Sbjct: 241 ----IKGNELDLALDVYRQMLAEGCTPNLVTYNTLIDVYGKTGAWEEAIRVL-DALERQG 295

Query: 509 TP----TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSAS 564
                 TYNTV+ +   + ++  A+ I+++M   G  P A TY  +I           A 
Sbjct: 296 IDPEIRTYNTVIIACNMSGQAQEALRIYERMLAAGAQPTATTYTALISAYGKNGQLDRAL 355

Query: 565 ALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKA 624
            +   MVR G     +TY++LI      G ++ AL L   +  EG   +V+ YN+++   
Sbjct: 356 QIFQDMVRRGCERNVITYSSLISACEKAGRWELALELFREMHTEGCRPNVVTYNSLIAAC 415

Query: 625 CEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
            +  + +  + + EQM     +PD  T   + + Y   G    A+ A +
Sbjct: 416 AQGAQWEKAQEMFEQMQHRGCKPDAVTFGGLIAAYDRAGHWRRALTAFE 464



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 77/174 (44%), Gaps = 8/174 (4%)

Query: 543 NAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL 602
           N  TY  MI  C   +  + A  LV+ M   G      TY+AL+ + +   + D AL++ 
Sbjct: 194 NTMTYTTMISQCGTQQQLRRALELVAEMRSRGIQCNVHTYSALMNVCIKGNELDLALDVY 253

Query: 603 DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNC 662
             +  EG   +++ YNT++    + G  +    +++ + +  + P+  T + V    + C
Sbjct: 254 RQMLAEGCTPNLVTYNTLIDVYGKTGAWEEAIRVLDALERQGIDPEIRTYNTVI---IAC 310

Query: 663 GFHNSAMEALQVLSMRMLCEEVSTLEEKRSDFEDLILAEDSEAE-SRILQFCED 715
                A EAL++   RML    +  +   + +  LI A     +  R LQ  +D
Sbjct: 311 NMSGQAQEALRIYE-RML---AAGAQPTATTYTALISAYGKNGQLDRALQIFQD 360


>gi|357149641|ref|XP_003575182.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 557

 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 98/394 (24%), Positives = 160/394 (40%), Gaps = 24/394 (6%)

Query: 294 WSFSDVIHA-CGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
           ++++ +I   CGR + +G A  ++  M   G  P   TY   + A     G +  M++L 
Sbjct: 157 YTYNTLIRGLCGRGR-TGNALVVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAMKLLD 215

Query: 353 IMQQNNLKPQDSTI-ATLSVECSKALELDLAEALLDQISRCTNPK--PFSAFLAACDTMD 409
            M+     P   T    ++  C +    D  E L    S    P    ++  L    T +
Sbjct: 216 EMRAKGCAPDIITYNVVVNGICQEGRVDDAIEFLKSLPSHGCEPNTVSYNIVLKGLCTAE 275

Query: 410 KPERAIKIFAKMRQK-LRPDIRTYELLFSLF---GNVNAPYEEGNMFSQVDSAKRINAIE 465
           + E A K+ A+M QK   P++ T+ +L S     G V    E       +D   +     
Sbjct: 276 RWEDAEKLMAEMSQKGYPPNVVTFNMLISFLCRRGLVEPAME------VLDQIPKYGCTP 329

Query: 466 MDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQES 525
             ++ N I H+    K + +A+     +  ++   C         +YNT+L +L    E 
Sbjct: 330 NSLSYNPILHAFCKQKKMDRAMA---FVELMVSRGCYPDIV----SYNTLLTALCRGGEV 382

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
             A+E+  Q+K  G  P   +YN +ID  +     K A  L++ MV  G  P  +TY+ +
Sbjct: 383 DAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTKEALELLNEMVTKGLQPDIITYSTI 442

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI-DVIEFIIEQMHQNK 644
              L      +EA+     V   GI  + +LYN IL   C++    + I+  I  M  N 
Sbjct: 443 SSGLCREDRIEEAIRAFCKVQDMGIRPNTVLYNAILLGLCKRRETHNAIDLFI-YMISNG 501

Query: 645 VQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678
             P+ ST   +  G    G    A E L  L  R
Sbjct: 502 CMPNESTYTILIEGLTYEGLVKEARELLGELCSR 535



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 86/392 (21%), Positives = 146/392 (37%), Gaps = 83/392 (21%)

Query: 324 LQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAE 383
           ++P S+TY+  IR +       N + VL  M +    P   T                  
Sbjct: 152 MEPDSYTYNTLIRGLCGRGRTGNALVVLDDMLRRGCVPDVVT------------------ 193

Query: 384 ALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNV 442
                         ++  L A       ++A+K+  +MR K   PDI TY ++      V
Sbjct: 194 --------------YTILLEATCKRSGYKQAMKLLDEMRAKGCAPDIITYNVV------V 233

Query: 443 NAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCD 502
           N   +EG    +VD     +AIE                  LK+L + G         C+
Sbjct: 234 NGICQEG----RVD-----DAIE-----------------FLKSLPSHG---------CE 258

Query: 503 SKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKS 562
             T     +YN VL  L  A+    A ++  +M   G PPN  T+N++I         + 
Sbjct: 259 PNTV----SYNIVLKGLCTAERWEDAEKLMAEMSQKGYPPNVVTFNMLISFLCRRGLVEP 314

Query: 563 ASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILK 622
           A  ++  + + G  P +++Y  ++         D A+  ++L+   G   D++ YNT+L 
Sbjct: 315 AMEVLDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSRGCYPDIVSYNTLLT 374

Query: 623 KACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCE 682
             C  G +D    ++ Q+      P   + + V  G    G    A+E L  +  + L  
Sbjct: 375 ALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTKEALELLNEMVTKGLQP 434

Query: 683 EVSTLEEKRSDFEDLILAEDSEAESRILQFCE 714
           ++ T     S      L  +   E  I  FC+
Sbjct: 435 DIITYSTISSG-----LCREDRIEEAIRAFCK 461



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 74/308 (24%), Positives = 130/308 (42%), Gaps = 31/308 (10%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL-S 370
           A + +  + S G +P++ +Y+  ++ + +     +  +++  M Q    P   T   L S
Sbjct: 245 AIEFLKSLPSHGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSQKGYPPNVVTFNMLIS 304

Query: 371 VECSKALELDLAEALLDQISR--CT-NPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LR 426
             C + L ++ A  +LDQI +  CT N   ++  L A     K +RA+     M  +   
Sbjct: 305 FLCRRGL-VEPAMEVLDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSRGCY 363

Query: 427 PDIRTYELLFSLF---GNVNAPYEEGNMFSQ-----------------VDSAKRINAIEM 466
           PDI +Y  L +     G V+A  E  +                       + K   A+E+
Sbjct: 364 PDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTKEALEL 423

Query: 467 --DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFC---DSKTPLGTPTYNTVLHSLVE 521
             +M    +Q   I+   +   L  E  I E I+ FC   D      T  YN +L  L +
Sbjct: 424 LNEMVTKGLQPDIITYSTISSGLCREDRIEEAIRAFCKVQDMGIRPNTVLYNAILLGLCK 483

Query: 522 AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMT 581
            +E+H A+++F  M + G  PN +TY I+I+  +     K A  L+  +   G   + + 
Sbjct: 484 RRETHNAIDLFIYMISNGCMPNESTYTILIEGLTYEGLVKEARELLGELCSRGVVSKGLI 543

Query: 582 YTALIKIL 589
             A I++L
Sbjct: 544 NKAAIRLL 551



 Score = 45.1 bits (105), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 56/259 (21%), Positives = 96/259 (37%), Gaps = 35/259 (13%)

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
           M +K    N   + +++  LC+ G +E A  ++  +  +YG  P    YN  L A  K  
Sbjct: 287 MSQKGYPPNVVTFNMLISFLCRRGLVEPAMEVLDQI-PKYGCTPNSLSYNPILHAFCKQK 345

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYSLSIFSLR 231
            M  A   ++LM SR    + V+Y  LL        + A  E+      K  +  + S  
Sbjct: 346 KMDRAMAFVELMVSRGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYN 405

Query: 232 KFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRT-SEGRLRSSRLDIPIPLNALPVMK 290
             +   T+    K A E L  MV   +   +    T S G  R  R++            
Sbjct: 406 TVIDGLTKAGKTKEALELLNEMVTKGLQPDIITYSTISSGLCREDRIE------------ 453

Query: 291 VLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEV 350
                  + I A               ++Q +G++P++  Y+  +  +   R   N +++
Sbjct: 454 -------EAIRA-------------FCKVQDMGIRPNTVLYNAILLGLCKRRETHNAIDL 493

Query: 351 LKIMQQNNLKPQDSTIATL 369
              M  N   P +ST   L
Sbjct: 494 FIYMISNGCMPNESTYTIL 512


>gi|224713518|gb|ACN62066.1| PPR-817 [Zea mays]
          Length = 817

 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 76/316 (24%), Positives = 134/316 (42%), Gaps = 13/316 (4%)

Query: 359 LKPQDSTIATLSVECSKALELDLAEALLDQISRC---TNPKPFSAFLAACDTMDKPERAI 415
           L P   T A L   C++A   +LA A   Q+ R     N    +  L       + + A+
Sbjct: 110 LSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEAL 169

Query: 416 KIFAKMRQKLR--PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNI 473
            I      +L   PD+ +Y +L     +     +  ++   +     + +  + +A N +
Sbjct: 170 DILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNV-VAYNTV 228

Query: 474 QHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFK 533
                   ++ KA     + +E++Q       P    TYN+V+H+L +A+   +A    +
Sbjct: 229 IDGFFKEGDVNKACD---LFKEMVQ----RGIPPDLVTYNSVVHALCKARAMDKAEAFLR 281

Query: 534 QMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYG 593
           QM    + PN  TYN +I   S    +K A  +   M R    P  +T + L+  L  YG
Sbjct: 282 QMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYG 341

Query: 594 DFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCH 653
              EA ++ D ++++G   DV  YN +L     KG +  +  + + M  + + PD  T +
Sbjct: 342 KIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFN 401

Query: 654 FVFSGYVNCGFHNSAM 669
            +   Y NCG  + AM
Sbjct: 402 VLIKAYANCGMLDKAM 417



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 84/401 (20%), Positives = 163/401 (40%), Gaps = 31/401 (7%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLG--LQPSSHTYDGFIRAIVSDRGLRNGMEVL 351
           +S+S ++ +      SG A+ L+  M   G    P+   Y+  I     +  +    ++ 
Sbjct: 186 FSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLF 245

Query: 352 KIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTM 408
           K M Q  + P   T  ++     KA  +D AEA L Q+       N   ++  +    + 
Sbjct: 246 KEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSST 305

Query: 409 DKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQV------------ 455
            + + A+++F +MR+  + PD+ T  +L           E  ++F  +            
Sbjct: 306 GQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSY 365

Query: 456 -----DSAKRINAIEMD-----MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKT 505
                  A +   ++M      M  + I     +   L+KA    GM+ + +  F + + 
Sbjct: 366 NIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRD 425

Query: 506 PLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKS 562
               P   TY TV+ +L    +   AME F QM   G+ P+   YN +I           
Sbjct: 426 HGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLK 485

Query: 563 ASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILK 622
           A  L+S ++ +G +   + ++++I  L   G   +A N+ DL    G+  D ++YN ++ 
Sbjct: 486 AKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMD 545

Query: 623 KACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
             C  G+++    + + M    ++P+      + +GY   G
Sbjct: 546 GYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIG 586



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 86/407 (21%), Positives = 163/407 (40%), Gaps = 57/407 (14%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ V+HA  + +    AE  + QM +  + P++ TY+  I    S    +  + V K M
Sbjct: 259 TYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEM 318

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQIS-RCTNPKPFSAFL----------- 402
           +++++ P   T++ L     K  ++  A  + D ++ +  NP  FS  +           
Sbjct: 319 RRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCL 378

Query: 403 -----------------------------AACDTMDKPERAIKIFAKMR-QKLRPDIRTY 432
                                        A C  +DK   A+ IF +MR   ++PD+ TY
Sbjct: 379 VDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDK---AMIIFNEMRDHGVKPDVVTY 435

Query: 433 ELLFSLFGNVNAPYEEGNMFSQ-VDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEG 491
             + +    +    +    F+Q +D     +      A N +     +  +LLKA     
Sbjct: 436 RTVIAALCRIGKMDDAMEKFNQMIDQGVAPD----KYAYNCLIQGFCTHGSLLKA----- 486

Query: 492 MIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI 551
             +ELI    ++   L    +++++++L +      A  IF      G+ P+A  YN+++
Sbjct: 487 --KELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLM 544

Query: 552 DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIP 611
           D   ++   + A  +   MV  G  P  + Y  L+      G  DE L+L   +   GI 
Sbjct: 545 DGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQRGIK 604

Query: 612 HDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
              +LY+ I+    E GR    +    +M ++ +  D  T + V  G
Sbjct: 605 PSTILYSIIIDGLFEAGRTVPAKMKFHEMTESGIAMDICTYNIVLRG 651



 Score = 76.3 bits (186), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 62/268 (23%), Positives = 118/268 (44%), Gaps = 20/268 (7%)

Query: 413 RAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471
           +A  +F +M Q+ + PD+ TY  +        A          +D A+   A    M   
Sbjct: 240 KACDLFKEMVQRGIPPDLVTYNSVVHALCKARA----------MDKAE---AFLRQMVNK 286

Query: 472 NIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRA 528
            +  ++ +  NL+    + G  +E ++ F + +     P   T + ++ SL +  +   A
Sbjct: 287 RVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEA 346

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
            ++F  M   G  P+  +YNIM++  +   C    + L  +M+ DG  P   T+  LIK 
Sbjct: 347 RDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKA 406

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
             + G  D+A+ + + +   G+  DV+ Y T++   C  G++D       QM    V PD
Sbjct: 407 YANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPD 466

Query: 649 PSTCHFVFSGYVNCGFHNSAMEALQVLS 676
               + +  G+     H S ++A +++S
Sbjct: 467 KYAYNCLIQGFCT---HGSLLKAKELIS 491



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 83/180 (46%), Gaps = 7/180 (3%)

Query: 513 NTVLHSLVEAQESHRAMEIF-KQMKTCGIPPNAATYNIMIDCCSIIRCFKSASA--LVSM 569
           N +L    EA+ +  A++I   +    G  P+  +Y+I++   S+    KS  A  L+ M
Sbjct: 153 NHLLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLK--SLCDQGKSGQADDLLRM 210

Query: 570 MVRDGFY--PQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEK 627
           M   G    P  + Y  +I      GD ++A +L   +   GIP D++ YN+++   C+ 
Sbjct: 211 MAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKA 270

Query: 628 GRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTL 687
             +D  E  + QM   +V P+  T + +  GY + G    A+   + +    +  +V TL
Sbjct: 271 RAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTL 330



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 122/572 (21%), Positives = 222/572 (38%), Gaps = 63/572 (11%)

Query: 108 ETWRMMEEKEI--GLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFL 165
           +  RMM E       N   Y  ++    K G + +A +L   + +R GI P L  YNS +
Sbjct: 206 DLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQR-GIPPDLVTYNSVV 264

Query: 166 GACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELL----KLAVWQKNLSAVHEIWEDYIK 221
            A  K  +M  A   L  M ++ V  N  TY  L+        W++ +    E+    I 
Sbjct: 265 HALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSIL 324

Query: 222 HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGK---------LYINRTSEGRL 272
              +++  L   +  + ++++ +  ++T+      AM G+         +     ++G L
Sbjct: 325 PDVVTLSMLMGSLCKYGKIKEARDVFDTM------AMKGQNPDVFSYNIMLNGYATKGCL 378

Query: 273 --RSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLML---QMQSLGLQPS 327
              +   D+ +     P      ++F+ +I A     N G+ ++ M+   +M+  G++P 
Sbjct: 379 VDMTDLFDLMLGDGIAPDF----YTFNVLIKA---YANCGMLDKAMIIFNEMRDHGVKPD 431

Query: 328 SHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLD 387
             TY   I A+     + + ME    M    + P       L         L  A+ L+ 
Sbjct: 432 VVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELIS 491

Query: 388 QISRCTNPKPFSAFLAACDTMDKPER---AIKIF-AKMRQKLRPDIRTYELL---FSLFG 440
           +I           F +  + + K  R   A  IF   +   L PD   Y +L   + L G
Sbjct: 492 EIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVG 551

Query: 441 N-----------VNAPYEE-----GNMFSQVDSAKRIN---AIEMDMARNNIQHSHISMK 481
                       V+A  E      G + +      RI+   ++  +M +  I+ S I   
Sbjct: 552 KMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYS 611

Query: 482 NLLKALGAEGMIRELIQYF---CDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTC 538
            ++  L   G        F    +S   +   TYN VL  L + +    A+ +FK+++  
Sbjct: 612 IIIDGLFEAGRTVPAKMKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAM 671

Query: 539 GIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEA 598
            +  N  T N MID     R  + A  L + + R    P  +TY+ +I  L+  G  +EA
Sbjct: 672 NVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVPSVVTYSIMITNLIKEGLVEEA 731

Query: 599 LNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
            ++   +   G   +  L N ++++  +K  I
Sbjct: 732 EDMFSSMQNAGCEPNSRLLNHVVRELLKKNEI 763



 Score = 48.9 bits (115), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 72/342 (21%), Positives = 119/342 (34%), Gaps = 81/342 (23%)

Query: 382 AEALLDQISRCTNP---KPFSAFLAA-------CDTMDKPERAIKIF------AKMRQKL 425
           A  LLD++ R   P   +  + FLAA             P  A+ +F      A+  + L
Sbjct: 51  AHDLLDELQRRGTPVLERDLNGFLAALARAPSSAACRSGPALAVALFNRAASRAQGPRVL 110

Query: 426 RPDIRTYELLFSLFGNVNAPYEEGNMFSQV-DSAKRINAI-------------EMDMARN 471
            P   TY +L       + P      F Q+  +  R+N I               D A +
Sbjct: 111 SPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEALD 170

Query: 472 NIQHSH---------ISMKNLLKAL---GAEGMIRELIQYFCDSKTPLGTP---TYNTVL 516
            + H            S   LLK+L   G  G   +L++   +    + +P    YNTV+
Sbjct: 171 ILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGA-VCSPNVVAYNTVI 229

Query: 517 HSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFY 576
               +  + ++A ++FK+M   GIPP+  TYN ++      R    A A +  MV     
Sbjct: 230 DGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVL 289

Query: 577 PQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFI 636
           P   TY  LI      G + EA+                                    +
Sbjct: 290 PNNWTYNNLIYGYSSTGQWKEAVR-----------------------------------V 314

Query: 637 IEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678
            ++M ++ + PD  T   +       G    A +    ++M+
Sbjct: 315 FKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMK 356


>gi|302833221|ref|XP_002948174.1| hypothetical protein VOLCADRAFT_116752 [Volvox carteri f.
           nagariensis]
 gi|300266394|gb|EFJ50581.1| hypothetical protein VOLCADRAFT_116752 [Volvox carteri f.
           nagariensis]
          Length = 1001

 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 75/341 (21%), Positives = 140/341 (41%), Gaps = 49/341 (14%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           +S++  I  C   Q+   A +LM +M+S  ++ + HTY   +   +    L   +++   
Sbjct: 145 YSYTATISLCIHGQDVDRALELMQEMRSRNIERNVHTYTALMNVCIKCGKLPLALDIYNS 204

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQIS-RCTNP--KPFSAFLAACDTMDK 410
           M+  N  P   T  TL     K  + + A  +LD +      P  + ++  + AC+  ++
Sbjct: 205 MRAVNCMPNVVTYNTLVDVYGKLGQWERAIHVLDVMKHEGVEPVLRTYNTLIIACNMCNQ 264

Query: 411 PERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
           P  A+ ++ ++      P+  TY  L S +G            +Q+  A  +     +M 
Sbjct: 265 PREALAVYQRLLSDGFTPNSTTYNALISAYGKT----------TQLGKALEVY---QEML 311

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAM 529
           R N+  S I                                TY++++ +  +A +   A+
Sbjct: 312 RQNMDRSVI--------------------------------TYSSLISACEKAGQWETAL 339

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
            IF +M+     PN  TYN ++  C+    ++ A+ +   M   G  P  +TYTALI   
Sbjct: 340 RIFNEMQQDKCVPNTVTYNSLVTACAQGGQWEKAAEVFEQMNAHGCTPDVVTYTALISAY 399

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
              G + +AL     + ++G   D ++YN I+    E G I
Sbjct: 400 ERGGQWQKALQAFHKMCVQGCKPDAIVYNAIIDTLWETGII 440



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 86/186 (46%), Gaps = 2/186 (1%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TYNT++    +  +  RA+ +   MK  G+ P   TYN +I  C++    + A A+   +
Sbjct: 216 TYNTLVDVYGKLGQWERAIHVLDVMKHEGVEPVLRTYNTLIIACNMCNQPREALAVYQRL 275

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEK-GR 629
           + DGF P + TY ALI          +AL +   +  + +   V+ Y++++  ACEK G+
Sbjct: 276 LSDGFTPNSTTYNALISAYGKTTQLGKALEVYQEMLRQNMDRSVITYSSLI-SACEKAGQ 334

Query: 630 IDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEE 689
            +    I  +M Q+K  P+  T + + +     G    A E  + ++      +V T   
Sbjct: 335 WETALRIFNEMQQDKCVPNTVTYNSLVTACAQGGQWEKAAEVFEQMNAHGCTPDVVTYTA 394

Query: 690 KRSDFE 695
             S +E
Sbjct: 395 LISAYE 400



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 66/313 (21%), Positives = 127/313 (40%), Gaps = 50/313 (15%)

Query: 364 STIATLSVECSKALELDLAEALLDQI-SRCT--NPKPFSAFLAACDTMDKPERAIKIFAK 420
           S  AT+S+ C    ++D A  L+ ++ SR    N   ++A +  C    K   A+ I+  
Sbjct: 146 SYTATISL-CIHGQDVDRALELMQEMRSRNIERNVHTYTALMNVCIKCGKLPLALDIYNS 204

Query: 421 MRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHIS 479
           MR     P++ TY  L  ++G             Q + A                   I 
Sbjct: 205 MRAVNCMPNVVTYNTLVDVYGK----------LGQWERA-------------------IH 235

Query: 480 MKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCG 539
           + +++K  G E ++R                TYNT++ +     +   A+ +++++ + G
Sbjct: 236 VLDVMKHEGVEPVLR----------------TYNTLIIACNMCNQPREALAVYQRLLSDG 279

Query: 540 IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEAL 599
             PN+ TYN +I           A  +   M+R       +TY++LI      G ++ AL
Sbjct: 280 FTPNSTTYNALISAYGKTTQLGKALEVYQEMLRQNMDRSVITYSSLISACEKAGQWETAL 339

Query: 600 NLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
            + + +  +    + + YN+++    + G+ +    + EQM+ +   PD  T   + S Y
Sbjct: 340 RIFNEMQQDKCVPNTVTYNSLVTACAQGGQWEKAAEVFEQMNAHGCTPDVVTYTALISAY 399

Query: 660 VNCGFHNSAMEAL 672
              G    A++A 
Sbjct: 400 ERGGQWQKALQAF 412



 Score = 50.4 bits (119), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 74/156 (47%), Gaps = 5/156 (3%)

Query: 288 VMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNG 347
           V  VLR +++ +I AC        A  +  ++ S G  P+S TY+  I A      L   
Sbjct: 245 VEPVLR-TYNTLIIACNMCNQPREALAVYQRLLSDGFTPNSTTYNALISAYGKTTQLGKA 303

Query: 348 MEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQIS--RCT-NPKPFSAFLAA 404
           +EV + M + N+     T ++L   C KA + + A  + +++   +C  N   +++ + A
Sbjct: 304 LEVYQEMLRQNMDRSVITYSSLISACEKAGQWETALRIFNEMQQDKCVPNTVTYNSLVTA 363

Query: 405 CDTMDKPERAIKIFAKMR-QKLRPDIRTYELLFSLF 439
           C    + E+A ++F +M      PD+ TY  L S +
Sbjct: 364 CAQGGQWEKAAEVFEQMNAHGCTPDVVTYTALISAY 399


>gi|401398381|ref|XP_003880292.1| pentatricopeptide repeat-containing protein At5g55840, related
            [Neospora caninum Liverpool]
 gi|325114702|emb|CBZ50258.1| pentatricopeptide repeat-containing protein At5g55840, related
            [Neospora caninum Liverpool]
          Length = 1844

 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 98/180 (54%), Gaps = 4/180 (2%)

Query: 472  NIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTP----LGTPTYNTVLHSLVEAQESHR 527
             +Q + ++   +  AL + G + E ++ F + K        T  Y+T++    ++++  +
Sbjct: 986  GLQPNAVAYGCMYDALVSNGRVVEALELFEEMKREGQVLPNTIMYSTIIKGFAQSKQLDK 1045

Query: 528  AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
            A++++ +M+  G+  N  T+N ++D C+ +     A+ L+  M+  G  P  +T++ +IK
Sbjct: 1046 ALKMYAEMQQNGVAINIVTFNSIVDACARVGAMDKAAMLLEDMLSQGIKPDLITFSTIIK 1105

Query: 588  ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
                +G+ ++AL+LL  +    I  D +LYN++L    + GR+ + E++ E+M + ++ P
Sbjct: 1106 GYCVHGEMNKALHLLKAMRERQIKPDGVLYNSLLDGCVKTGRVSLCEYLWEEMQREEIPP 1165



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 62/143 (43%), Gaps = 1/143 (0%)

Query: 539  GIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDG-FYPQTMTYTALIKILLDYGDFDE 597
            G+ PNA  Y  M D          A  L   M R+G   P T+ Y+ +IK        D+
Sbjct: 986  GLQPNAVAYGCMYDALVSNGRVVEALELFEEMKREGQVLPNTIMYSTIIKGFAQSKQLDK 1045

Query: 598  ALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFS 657
            AL +   +   G+  +++ +N+I+      G +D    ++E M    ++PD  T   +  
Sbjct: 1046 ALKMYAEMQQNGVAINIVTFNSIVDACARVGAMDKAAMLLEDMLSQGIKPDLITFSTIIK 1105

Query: 658  GYVNCGFHNSAMEALQVLSMRML 680
            GY   G  N A+  L+ +  R +
Sbjct: 1106 GYCVHGEMNKALHLLKAMRERQI 1128



 Score = 54.3 bits (129), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/185 (22%), Positives = 87/185 (47%), Gaps = 5/185 (2%)

Query: 484  LKALGAEGMIRELIQYFCDSKTPLG----TPTYNTVLHSLVEAQESHRAMEIFKQMKTCG 539
            L+ LG+ G ++     +   K   G       Y  +  +LV       A+E+F++MK  G
Sbjct: 962  LRHLGSTGKVKACWTVWSKLKNSRGLQPNAVAYGCMYDALVSNGRVVEALELFEEMKREG 1021

Query: 540  -IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEA 598
             + PN   Y+ +I   +  +    A  + + M ++G     +T+ +++      G  D+A
Sbjct: 1022 QVLPNTIMYSTIIKGFAQSKQLDKALKMYAEMQQNGVAINIVTFNSIVDACARVGAMDKA 1081

Query: 599  LNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
              LL+ +  +GI  D++ ++TI+K  C  G ++    +++ M + +++PD    + +  G
Sbjct: 1082 AMLLEDMLSQGIKPDLITFSTIIKGYCVHGEMNKALHLLKAMRERQIKPDGVLYNSLLDG 1141

Query: 659  YVNCG 663
             V  G
Sbjct: 1142 CVKTG 1146


>gi|357498969|ref|XP_003619773.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494788|gb|AES75991.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 452

 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 82/365 (22%), Positives = 157/365 (43%), Gaps = 59/365 (16%)

Query: 323 GLQPSSHTYDGFIRAIVSDRGLRNGMEVLK----IMQQNNLKPQDSTIATLSVECSKALE 378
           G Q +  +Y   I  +      R  M+VL+    ++ Q N+    + I +L   C   L 
Sbjct: 79  GFQLNQVSYGTLIDGLCKAGETRAAMQVLRNIDGLLVQPNVVMYSTIIYSL---CKDKLV 135

Query: 379 LD----LAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYE 433
           +D     ++ LL +IS   +   ++  +  C  + + + A+ +F +M  K ++PDI T+ 
Sbjct: 136 IDAFDLYSQMLLKRIS--PDVITYNTLMYGCLIVGRLKEAVGLFNQMLLKNIKPDIYTFN 193

Query: 434 LLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMI 493
           +L      V+   +EG               EM  ARN           +L  +  + + 
Sbjct: 194 IL------VDGLCKEG---------------EMKKARN-----------VLAVMIKQSVD 221

Query: 494 RELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC 553
            ++I             TYN+++      ++ ++A  +F  M   G+ P+  +Y++MI+ 
Sbjct: 222 PDVI-------------TYNSLMDGYFLVKQENKATFVFNTMARRGVTPDVHSYSVMING 268

Query: 554 CSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHD 613
               +    A  L+  M      P T+TY++LI  L   G   +A +L++ +   G P D
Sbjct: 269 LCKTKMVDEAVNLLKEMHSKSMAPNTVTYSSLIDGLHKSGRIFDAWDLVNEMHNRGQPAD 328

Query: 614 VLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           V+ YN++L   C+  ++D    ++ ++    +QPD  T   +  G    G    A E  Q
Sbjct: 329 VITYNSLLDALCKNHQVDKAITLLTKIKDQGIQPDIYTYTILVDGLCKNGRLKDAQEVYQ 388

Query: 674 VLSMR 678
           +L ++
Sbjct: 389 ILLIK 393



 Score = 62.8 bits (151), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 79/180 (43%)

Query: 507 LGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASAL 566
           L   +Y T++  L +A E+  AM++ + +    + PN   Y+ +I      +    A  L
Sbjct: 82  LNQVSYGTLIDGLCKAGETRAAMQVLRNIDGLLVQPNVVMYSTIIYSLCKDKLVIDAFDL 141

Query: 567 VSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE 626
            S M+     P  +TY  L+   L  G   EA+ L + + L+ I  D+  +N ++   C+
Sbjct: 142 YSQMLLKRISPDVITYNTLMYGCLIVGRLKEAVGLFNQMLLKNIKPDIYTFNILVDGLCK 201

Query: 627 KGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           +G +     ++  M +  V PD  T + +  GY      N A      ++ R +  +V +
Sbjct: 202 EGEMKKARNVLAVMIKQSVDPDVITYNSLMDGYFLVKQENKATFVFNTMARRGVTPDVHS 261



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 84/397 (21%), Positives = 156/397 (39%), Gaps = 38/397 (9%)

Query: 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
           + S+  +I    +   +  A Q++  +  L +QP+   Y   I ++  D+ + +  ++  
Sbjct: 84  QVSYGTLIDGLCKAGETRAAMQVLRNIDGLLVQPNVVMYSTIIYSLCKDKLVIDAFDLYS 143

Query: 353 IMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTM 408
            M    + P   T  TL   C     L  A  L +Q+    N KP    F+  +      
Sbjct: 144 QMLLKRISPDVITYNTLMYGCLIVGRLKEAVGLFNQM-LLKNIKPDIYTFNILVDGLCKE 202

Query: 409 DKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMD 467
            + ++A  + A M +Q + PD+ TY  L   +  V    +   +F+              
Sbjct: 203 GEMKKARNVLAVMIKQSVDPDVITYNSLMDGYFLVKQENKATFVFNT------------- 249

Query: 468 MARNNIQ---HSHISMKN-LLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQ 523
           MAR  +    HS+  M N L K    +  +  L +    S  P  T TY++++  L ++ 
Sbjct: 250 MARRGVTPDVHSYSVMINGLCKTKMVDEAVNLLKEMHSKSMAP-NTVTYSSLIDGLHKSG 308

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
               A ++  +M   G P +  TYN ++D          A  L++ +   G  P   TYT
Sbjct: 309 RIFDAWDLVNEMHNRGQPADVITYNSLLDALCKNHQVDKAITLLTKIKDQGIQPDIYTYT 368

Query: 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
            L+  L   G   +A  +  ++ ++G   D     ++  KA           ++ +M  N
Sbjct: 369 ILVDGLCKNGRLKDAQEVYQILLIKGYHLD-----SLFDKALS---------LLSKMEDN 414

Query: 644 KVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRML 680
              P+P T   +         ++ A+E L+ +  R L
Sbjct: 415 GCTPNPVTFEILIRALFENDMNDKAVELLREMIARGL 451



 Score = 41.6 bits (96), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 74/165 (44%), Gaps = 11/165 (6%)

Query: 509 TPT---YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC-CSIIRC----- 559
           TPT   +  +  SLV+    H  + +  QM+  GI  +    NI+++C C + +      
Sbjct: 5   TPTIFEFGKIFASLVKINHFHTVISLSHQMELRGIQTDLVNLNILVNCFCHLGQVCLNDK 64

Query: 560 FKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNT 619
            K        ++  GF    ++Y  LI  L   G+   A+ +L  +    +  +V++Y+T
Sbjct: 65  VKETLHFHDDVIAKGFQLNQVSYGTLIDGLCKAGETRAAMQVLRNIDGLLVQPNVVMYST 124

Query: 620 ILKKAC-EKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
           I+   C +K  ID  + +  QM   ++ PD  T + +  G +  G
Sbjct: 125 IIYSLCKDKLVIDAFD-LYSQMLLKRISPDVITYNTLMYGCLIVG 168


>gi|222636666|gb|EEE66798.1| hypothetical protein OsJ_23544 [Oryza sativa Japonica Group]
          Length = 665

 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 90/455 (19%), Positives = 177/455 (38%), Gaps = 115/455 (25%)

Query: 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
           R ++++VI+ACG   N   A +L  +M   G+ P   T++  + A+ +       +   +
Sbjct: 81  RTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLVTHNIVLSALKNGAQYSKAISYFE 140

Query: 353 IMQQNNLKPQDSTIATLS------VECSKALEL-------------DLAE--------AL 385
           IM+  N+     T+  +        +C +A+EL             D+           +
Sbjct: 141 IMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDVVTYTSIMHSYCI 200

Query: 386 LDQISRCT-------------NPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRT 431
             Q+  C              N   +++ L A  +      A+ IF  +++  LRPDI +
Sbjct: 201 YGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLIKKNGLRPDIVS 260

Query: 432 YELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEG 491
           Y  L + +G    P +   +F++             M +N+ + + +S   L+ A G+ G
Sbjct: 261 YTSLLNAYGRSAQPEKAREVFNK-------------MKKNSCKPNKVSYNALIDAYGSAG 307

Query: 492 MIRELIQYF----CDSKTP----------------------------------LGTPTYN 513
           M++E +        D   P                                  L T  YN
Sbjct: 308 MLKEAVGLLHEMEKDGIQPDVVSISTLLAACGRCRQITRIETILEAARSRGIDLNTVAYN 367

Query: 514 TVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCS-------IIRCFKS---- 562
           + + S +   +  +A+E++  M+   + P+A TYNI+I   S        +R F+     
Sbjct: 368 SGIKSYLSFGDYEKALELYTSMRESNVKPDAVTYNILISGSSKLGKYTESLRFFEDMVDS 427

Query: 563 ------------ASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGI 610
                       A +  S M + G +P  +TYT LI+     G +  A +L   + + GI
Sbjct: 428 KVSSTKEGKLSEAESTFSSMKKSGCFPDVLTYTTLIQAYNAGGGWKRAWDLFKEMEVNGI 487

Query: 611 PHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           P D ++ +++++   + G  + +  ++E M +  +
Sbjct: 488 PPDAIICSSLMEAFNKGGEPERVLQLMEFMKKKSI 522



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 62/268 (23%), Positives = 112/268 (41%), Gaps = 23/268 (8%)

Query: 414 AIKIFAKMRQKLRPDIRTYELLFSLFGNV-NAPYEEGNMFSQVDSAKRI--NAIEMDMAR 470
           AI I   M +   P  RT       + NV NA    GN    ++  K++  N +  D+  
Sbjct: 65  AINIMEDMLRAAIPPTRT------TYNNVINACGAAGNWKKALELCKKMTENGVGPDLVT 118

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYF---CDSKTPLGTPTYNTVLHSLVEAQESHR 527
           +NI         +L AL       + I YF     +     T T N ++H LV+  +   
Sbjct: 119 HNI---------VLSALKNGAQYSKAISYFEIMKGANVTSDTFTLNIIIHCLVKIGQCGE 169

Query: 528 AMEIFKQMKT--CGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
           A+E+F  M+      PP+  TY  ++    I    ++  A+  +MV +G  P  + Y +L
Sbjct: 170 AIELFNSMRERRTKCPPDVVTYTSIMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYNSL 229

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           +      G   EAL + +L+   G+  D++ Y ++L       + +    +  +M +N  
Sbjct: 230 LGAYASRGMHREALAIFNLIKKNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNKMKKNSC 289

Query: 646 QPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           +P+  + + +   Y + G    A+  L 
Sbjct: 290 KPNKVSYNALIDAYGSAGMLKEAVGLLH 317



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/224 (19%), Positives = 88/224 (39%), Gaps = 41/224 (18%)

Query: 489 AEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYN 548
           A G+  E+ ++ C     +    YN+++H+   A +   A+ I + M    IPP   TYN
Sbjct: 30  ARGLFFEMQEWRCKPDADI----YNSLIHAHSRAGQWRWAINIMEDMLRAAIPPTRTTYN 85

Query: 549 IMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLE 608
            +I+ C     +K A  L   M  +G  P  +T+  ++  L +   + +A++  +++   
Sbjct: 86  NVINACGAAGNWKKALELCKKMTENGVGPDLVTHNIVLSALKNGAQYSKAISYFEIMKGA 145

Query: 609 GI-------------------------------------PHDVLLYNTILKKACEKGRID 631
            +                                     P DV+ Y +I+   C  G+++
Sbjct: 146 NVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDVVTYTSIMHSYCIYGQVE 205

Query: 632 VIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
             + I + M    V+P+    + +   Y + G H  A+    ++
Sbjct: 206 NCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLI 249



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 90/460 (19%), Positives = 173/460 (37%), Gaps = 98/460 (21%)

Query: 90  FFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLG 149
           +  +LN   RS  P    E +  M++     N   Y  ++ A    G L+EA  L++ + 
Sbjct: 261 YTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGMLKEAVGLLHEM- 319

Query: 150 ERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNL 209
           E+ GI P +   ++ L AC +   +      L+   SR +  N V Y             
Sbjct: 320 EKDGIQPDVVSISTLLAACGRCRQITRIETILEAARSRGIDLNTVAYN------------ 367

Query: 210 SAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSE 269
                     IK Y LS     K +  +T +R+     + + + + ++   KL       
Sbjct: 368 --------SGIKSY-LSFGDYEKALELYTSMRESNVKPDAVTYNILISGSSKL------- 411

Query: 270 GRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGL---AEQLMLQMQSLGLQP 326
           G+   S                LR+ F D++ +   +   G    AE     M+  G  P
Sbjct: 412 GKYTES----------------LRF-FEDMVDSKVSSTKEGKLSEAESTFSSMKKSGCFP 454

Query: 327 SSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALL 386
              TY   I+A  +  G +   ++ K M+ N + P        ++ CS  +E        
Sbjct: 455 DVLTYTTLIQAYNAGGGWKRAWDLFKEMEVNGIPPD-------AIICSSLME-------- 499

Query: 387 DQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRP-DIRTYELLFSLFGNVNAP 445
                            A +   +PER +++   M++K  P + ++Y  + +    +   
Sbjct: 500 -----------------AFNKGGEPERVLQLMEFMKKKSIPLNQKSYFEIIASCTMIRDW 542

Query: 446 YEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYF---CD 502
                M   +DS+  +++I +            ++ ++L  LG  G    +++ F     
Sbjct: 543 KTASEMIEYLDSS--LSSISVG-----------TLNHVLNFLGKCGKTENMMKLFYKMVT 589

Query: 503 SKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPP 542
           S + +G  TY  VL +L+   +  + +E+ + M+  G+ P
Sbjct: 590 SCSTVGLSTYAVVLRNLLVVGKWRKYIEVLQWMEDSGVHP 629



 Score = 39.7 bits (91), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 35/167 (20%), Positives = 65/167 (38%)

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           Y  ++       +  +A  +F +M+     P+A  YN +I   S    ++ A  ++  M+
Sbjct: 14  YGMMIRLYARHNQVDQARGLFFEMQEWRCKPDADIYNSLIHAHSRAGQWRWAINIMEDML 73

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
           R    P   TY  +I      G++ +AL L   ++  G+  D++ +N +L       +  
Sbjct: 74  RAAIPPTRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLVTHNIVLSALKNGAQYS 133

Query: 632 VIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678
                 E M    V  D  T + +    V  G    A+E    +  R
Sbjct: 134 KAISYFEIMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRER 180


>gi|359495888|ref|XP_003635109.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g24830-like [Vitis vinifera]
          Length = 580

 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 86/375 (22%), Positives = 160/375 (42%), Gaps = 23/375 (6%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +F+  I       N   A  L   M + G+ P+  TY+  I A+     L++  ++L+ +
Sbjct: 203 TFNTFIKGYCLNNNVDKALYLFSTMANSGIGPNKVTYNILIHALCKKGLLKDARKLLEKI 262

Query: 355 QQNNLKPQDSTIATLSVECSKALEL-DLAEALL---DQISRCT--NPKPFSAFLAACDTM 408
             ++   + S I T ++     L+  D+ +AL+   + + R T  +   ++  +     +
Sbjct: 263 LDDDCGKETSDIITSTIFMDGCLKKGDMVQALVHWDEMLQRGTQIDVVAYNVLIHGFCLI 322

Query: 409 DKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMD 467
                A + F +M ++ L PDI TY  L S F  +      GN+    D A  I+ +   
Sbjct: 323 QDMNSAYRYFCEMFKRGLLPDIFTYNTLISGFCKI------GNL----DEACYIHGV--- 369

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQE 524
           M++       IS K +++ L   G +    Q+       L  P    +N V+       +
Sbjct: 370 MSKMGAAPDLISYKMIIQGLCIHGDVIRANQFLVCMLENLMVPEPLIWNVVIDGHGRHGD 429

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
              A+ I  QM + GIPPN  TYN +I           A ++   M+ +G YP  +TY  
Sbjct: 430 LSNALSIRDQMVSFGIPPNVFTYNALIHAQIKGGNIVDAHSIKKEMLLNGIYPDVVTYNL 489

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
           LI    ++G    AL L D +   G   D++ Y  +++  C +G +   E ++ ++ ++ 
Sbjct: 490 LIGAACNFGRIHFALRLYDEMLRRGYEPDIITYTELIRGFCIRGHVMEAEELLAKLQRSG 549

Query: 645 VQPDPSTCHFVFSGY 659
           +  D +    +   Y
Sbjct: 550 LSIDHAPFQILIQKY 564



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 82/376 (21%), Positives = 154/376 (40%), Gaps = 28/376 (7%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL-S 370
           A+ L+ +M  +G  P+  T++ FI+    +  +   + +   M  + + P   T   L  
Sbjct: 185 ADNLVREMLEIGPSPNCATFNTFIKGYCLNNNVDKALYLFSTMANSGIGPNKVTYNILIH 244

Query: 371 VECSKALELDLAEALLDQI------SRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK 424
             C K L  D A  LL++I         ++    + F+  C       +A+  + +M Q+
Sbjct: 245 ALCKKGLLKD-ARKLLEKILDDDCGKETSDIITSTIFMDGCLKKGDMVQALVHWDEMLQR 303

Query: 425 -LRPDIRTYELL---FSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISM 480
             + D+  Y +L   F L  ++N+ Y     F ++     +  I      N +      +
Sbjct: 304 GTQIDVVAYNVLIHGFCLIQDMNSAYR---YFCEMFKRGLLPDI---FTYNTLISGFCKI 357

Query: 481 KNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGI 540
            NL +A    G++ ++         P    +Y  ++  L    +  RA +    M    +
Sbjct: 358 GNLDEACYIHGVMSKM------GAAP-DLISYKMIIQGLCIHGDVIRANQFLVCMLENLM 410

Query: 541 PPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALN 600
            P    +N++ID         +A ++   MV  G  P   TY ALI   +  G+  +A +
Sbjct: 411 VPEPLIWNVVIDGHGRHGDLSNALSIRDQMVSFGIPPNVFTYNALIHAQIKGGNIVDAHS 470

Query: 601 LLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYV 660
           +   + L GI  DV+ YN ++  AC  GRI     + ++M +   +PD  T   +  G+ 
Sbjct: 471 IKKEMLLNGIYPDVVTYNLLIGAACNFGRIHFALRLYDEMLRRGYEPDIITYTELIRGFC 530

Query: 661 NCGFHNSAMEALQVLS 676
                   MEA ++L+
Sbjct: 531 ---IRGHVMEAEELLA 543



 Score = 60.5 bits (145), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 79/370 (21%), Positives = 146/370 (39%), Gaps = 50/370 (13%)

Query: 335 IRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ---ISR 391
           IR +  +  LR  + +   M Q  + P   T   L     KA +L+ A+ L+ +   I  
Sbjct: 138 IRNLCLEGKLRAALWLRNKMIQKGVIPDVLTHNYLVNGLCKAGDLEKADNLVREMLEIGP 197

Query: 392 CTNPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGN 450
             N   F+ F+      +  ++A+ +F+ M    + P+  TY +L      ++A  ++G 
Sbjct: 198 SPNCATFNTFIKGYCLNNNVDKALYLFSTMANSGIGPNKVTYNIL------IHALCKKGL 251

Query: 451 MFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQY--FCDSKTPLG 508
           +       ++I   +     ++I  S I M   LK      M++ L+ +       T + 
Sbjct: 252 LKDARKLLEKILDDDCGKETSDIITSTIFMDGCLKK---GDMVQALVHWDEMLQRGTQID 308

Query: 509 TPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVS 568
              YN ++H     Q+ + A   F +M   G+ P+  TYN +I     I     A  +  
Sbjct: 309 VVAYNVLIHGFCLIQDMNSAYRYFCEMFKRGLLPDIFTYNTLISGFCKIGNLDEACYIHG 368

Query: 569 MMVRDGFYPQTMTYTALIK-------------------------------ILLD----YG 593
           +M + G  P  ++Y  +I+                               +++D    +G
Sbjct: 369 VMSKMGAAPDLISYKMIIQGLCIHGDVIRANQFLVCMLENLMVPEPLIWNVVIDGHGRHG 428

Query: 594 DFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCH 653
           D   AL++ D +   GIP +V  YN ++    + G I     I ++M  N + PD  T +
Sbjct: 429 DLSNALSIRDQMVSFGIPPNVFTYNALIHAQIKGGNIVDAHSIKKEMLLNGIYPDVVTYN 488

Query: 654 FVFSGYVNCG 663
            +     N G
Sbjct: 489 LLIGAACNFG 498



 Score = 49.7 bits (117), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 81/188 (43%), Gaps = 5/188 (2%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           T+N +++ L +A +  +A  + ++M   G  PN AT+N  I    +      A  L S M
Sbjct: 168 THNYLVNGLCKAGDLEKADNLVREMLEIGPSPNCATFNTFIKGYCLNNNVDKALYLFSTM 227

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLE--GIPHDVLLYNTILKKACEKG 628
              G  P  +TY  LI  L   G   +A  LL+ +  +  G     ++ +TI    C K 
Sbjct: 228 ANSGIGPNKVTYNILIHALCKKGLLKDARKLLEKILDDDCGKETSDIITSTIFMDGCLK- 286

Query: 629 RIDVIEFII--EQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           + D+++ ++  ++M Q   Q D    + +  G+      NSA      +  R L  ++ T
Sbjct: 287 KGDMVQALVHWDEMLQRGTQIDVVAYNVLIHGFCLIQDMNSAYRYFCEMFKRGLLPDIFT 346

Query: 687 LEEKRSDF 694
                S F
Sbjct: 347 YNTLISGF 354



 Score = 39.3 bits (90), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 29/127 (22%), Positives = 56/127 (44%), Gaps = 6/127 (4%)

Query: 553 CCSIIR--CF----KSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVS 606
           C ++IR  C     ++A  L + M++ G  P  +T+  L+  L   GD ++A NL+  + 
Sbjct: 134 CVAMIRNLCLEGKLRAALWLRNKMIQKGVIPDVLTHNYLVNGLCKAGDLEKADNLVREML 193

Query: 607 LEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHN 666
             G   +   +NT +K  C    +D   ++   M  + + P+  T + +       G   
Sbjct: 194 EIGPSPNCATFNTFIKGYCLNNNVDKALYLFSTMANSGIGPNKVTYNILIHALCKKGLLK 253

Query: 667 SAMEALQ 673
            A + L+
Sbjct: 254 DARKLLE 260


>gi|449497581|ref|XP_004160441.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g18020-like [Cucumis sativus]
          Length = 681

 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 106/538 (19%), Positives = 201/538 (37%), Gaps = 77/538 (14%)

Query: 138 LEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYT 197
           L   ++ + F  +  G  P +  Y + +    ++ ++  A    D M    V  N +TY+
Sbjct: 176 LPNVAHRVLFDMKSRGHCPNVVSYTALIDGYCRVCNVSAAEKLFDEMPGNYVEPNSLTYS 235

Query: 198 ELLKLAVWQKNLSA----VHEIWEDY------------IKHYSLSIFSLRKFVWSFTRLR 241
            L+   +++++       +  +WE                H   S+  +  F   FT   
Sbjct: 236 VLINGFLYKRDFETGKALICNLWERMKGELDSSVNNAAFAHLVDSLCLVGSFHEVFTIAE 295

Query: 242 DLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIH 301
           D+       +      M+  L   +   G  R   +     LN  P +     S++ +IH
Sbjct: 296 DMPQGQSVPEEFAYGQMIDSLCKAKRYHGASRIVYIMRKKGLN--PGL----LSYNSIIH 349

Query: 302 ACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKP 361
              +      A QL+++    G  PS HTY   +  +  +   +   EVL+IM       
Sbjct: 350 GLSKEGGCMRAYQLLVEGVEFGYSPSEHTYKVLLEGLCKELDTQKAKEVLQIM------- 402

Query: 362 QDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKM 421
               I    V+ ++   + L                     A C T +  E    +   +
Sbjct: 403 ----IHKQGVDRTRIYNIYLR--------------------AVCLTNNSTELLNTLVEML 438

Query: 422 RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMK 481
           +   +PD+ T   +   F  V +  E   + + +   K                 H++  
Sbjct: 439 QTNCQPDVITLNTVIKGFCKVGSIEEALKVLNDMIGGKFCTP------------DHVTFT 486

Query: 482 NLLKALGAEGMIRE----LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKT 537
            ++  L   G IRE    L +   +     G  TYN  +  L + Q++++AM  F +M  
Sbjct: 487 TIIFGLLNVGRIRESLDILYKVMPEKGIVPGVITYNATIRGLFKLQQANQAMNTFDRMVR 546

Query: 538 CGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQ----TMTYTALIKILLDYG 593
            GI  ++ TY ++ID   +  C +     V    +D  +P     +  Y+A++K L    
Sbjct: 547 NGIQADSTTYAVVID--GLCDCNQIEE--VKRFWKDIVWPSKIHDSFVYSAILKGLCHSS 602

Query: 594 DFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
            F+EA + L  +S  G+   +  YN ++  AC+ G       ++++M +N + PD  T
Sbjct: 603 KFNEACHFLYELSDSGVSPTIFCYNIVINTACKLGLKGEAYRLVKEMRKNGLAPDAVT 660



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 125/310 (40%), Gaps = 17/310 (5%)

Query: 373 CSKALELDLAEALLDQISR--CTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDI 429
           CS +L       L D  SR  C N   ++A +     +     A K+F +M    + P+ 
Sbjct: 172 CSFSLPNVAHRVLFDMKSRGHCPNVVSYTALIDGYCRVCNVSAAEKLFDEMPGNYVEPNS 231

Query: 430 RTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGA 489
            TY +L + F      +E G      +  +R+   E+D + NN   +H     L+ +L  
Sbjct: 232 LTYSVLINGF-LYKRDFETGKALI-CNLWERMKG-ELDSSVNNAAFAH-----LVDSLCL 283

Query: 490 EGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAAT 546
            G   E+     D       P    Y  ++ SL +A+  H A  I   M+  G+ P   +
Sbjct: 284 VGSFHEVFTIAEDMPQGQSVPEEFAYGQMIDSLCKAKRYHGASRIVYIMRKKGLNPGLLS 343

Query: 547 YNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVS 606
           YN +I   S       A  L+   V  G+ P   TY  L++ L    D  +A  +L ++ 
Sbjct: 344 YNSIIHGLSKEGGCMRAYQLLVEGVEFGYSPSEHTYKVLLEGLCKELDTQKAKEVLQIMI 403

Query: 607 LEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHN 666
            +       +YN  L+  C       +   + +M Q   QPD  T + V  G+   G   
Sbjct: 404 HKQGVDRTRIYNIYLRAVCLTNNSTELLNTLVEMLQTNCQPDVITLNTVIKGFCKVG--- 460

Query: 667 SAMEALQVLS 676
           S  EAL+VL+
Sbjct: 461 SIEEALKVLN 470



 Score = 55.8 bits (133), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 97/449 (21%), Positives = 187/449 (41%), Gaps = 40/449 (8%)

Query: 239 RLRDLKSAYETLQHMVALAMMGKLYI-NRTSEGRLRSSRLDIPIPLNALPVMKVLR---- 293
           RL D +S Y TL+ +V L      ++ +  +  RL        +P  A  V+  ++    
Sbjct: 133 RLLDYRSPYCTLRLLVCLFDAKPEFVPSIVNYNRLIDQFCSFSLPNVAHRVLFDMKSRGH 192

Query: 294 ----WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGME 349
                S++ +I    R  N   AE+L  +M    ++P+S TY   I   +  R    G  
Sbjct: 193 CPNVVSYTALIDGYCRVCNVSAAEKLFDEMPGNYVEPNSLTYSVLINGFLYKRDFETGKA 252

Query: 350 VLKIMQQNNLKPQDSTIA---------TLSVECSKALELDLAEALLDQISRCTNPKPFSA 400
           ++  + +      DS++          +L +  S      +AE   D     + P+ F A
Sbjct: 253 LICNLWERMKGELDSSVNNAAFAHLVDSLCLVGSFHEVFTIAE---DMPQGQSVPEEF-A 308

Query: 401 FLAACDTMDKPER---AIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVD 456
           +    D++ K +R   A +I   MR+K L P + +Y  +      ++   +EG       
Sbjct: 309 YGQMIDSLCKAKRYHGASRIVYIMRKKGLNPGLLSYNSI------IHGLSKEGGCM---- 358

Query: 457 SAKRINAIEMDMARNNIQHSH-ISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTV 515
            A ++    ++   +  +H++ + ++ L K L  +   +E++Q     +    T  YN  
Sbjct: 359 RAYQLLVEGVEFGYSPSEHTYKVLLEGLCKELDTQKA-KEVLQIMIHKQGVDRTRIYNIY 417

Query: 516 LHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGF 575
           L ++     S   +    +M      P+  T N +I     +   + A  +++ M+   F
Sbjct: 418 LRAVCLTNNSTELLNTLVEMLQTNCQPDVITLNTVIKGFCKVGSIEEALKVLNDMIGGKF 477

Query: 576 -YPQTMTYTALIKILLDYGDFDEALNLLDLVSLE-GIPHDVLLYNTILKKACEKGRIDVI 633
             P  +T+T +I  LL+ G   E+L++L  V  E GI   V+ YN  ++   +  + +  
Sbjct: 478 CTPDHVTFTTIIFGLLNVGRIRESLDILYKVMPEKGIVPGVITYNATIRGLFKLQQANQA 537

Query: 634 EFIIEQMHQNKVQPDPSTCHFVFSGYVNC 662
               ++M +N +Q D +T   V  G  +C
Sbjct: 538 MNTFDRMVRNGIQADSTTYAVVIDGLCDC 566


>gi|356561416|ref|XP_003548977.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 456

 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 94/216 (43%), Gaps = 3/216 (1%)

Query: 474 QHSHISMKNLLKALGAEGMIRELIQYFC---DSKTPLGTPTYNTVLHSLVEAQESHRAME 530
           Q + +S   LL  L   G  R  I++     DS T L    YNT++  L + +  + A +
Sbjct: 154 QMNQVSYGTLLNGLCKIGETRCAIKFLRMIEDSSTGLNVVMYNTIIDGLCKDKLVNEAYD 213

Query: 531 IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590
            + +M   GI PN  TY  +I    +      A +L++ M+     P   TY  LI  L 
Sbjct: 214 FYSEMNARGIFPNVITYTTLIGGFCLAGQLTGAFSLLNEMILKNINPNVYTYAILIDALC 273

Query: 591 DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650
             G   EA NLL  +   G P DV+ Y ++L   C+   +D    +  +M +  +QP+  
Sbjct: 274 KEGKVKEAKNLLAEMHYRGQPADVVTYTSLLDGFCKNQNLDKATALFMKMKEWGIQPNKY 333

Query: 651 TCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           T   +  G    G    A +  Q L ++  C +V T
Sbjct: 334 TYTALIDGLCKGGRLKDAQKLFQDLLVKGCCIDVCT 369



 Score = 57.0 bits (136), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 62/118 (52%)

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           +  +L  L + +    A+ + KQM+  GI PN  T NI+I+C   +     + +++  ++
Sbjct: 55  FGEILGYLAKMKHYSTAISLSKQMEVKGIEPNLVTLNILINCFCHLGQMSFSFSVLGKIL 114

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
           + G+ P T+T T L+K L   G+  ++++  D V  +G   + + Y T+L   C+ G 
Sbjct: 115 KLGYQPNTITLTTLMKGLCLKGEVQKSVHFHDKVVAQGFQMNQVSYGTLLNGLCKIGE 172



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 62/141 (43%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TY  ++ +L +  +   A  +  +M   G P +  TY  ++D     +    A+AL   M
Sbjct: 264 TYAILIDALCKEGKVKEAKNLLAEMHYRGQPADVVTYTSLLDGFCKNQNLDKATALFMKM 323

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
              G  P   TYTALI  L   G   +A  L   + ++G   DV  YN ++   C++G +
Sbjct: 324 KEWGIQPNKYTYTALIDGLCKGGRLKDAQKLFQDLLVKGCCIDVCTYNVMIGGLCKEGML 383

Query: 631 DVIEFIIEQMHQNKVQPDPST 651
           D    I  +M  N   P+  T
Sbjct: 384 DEALAIKSKMEDNGCIPNVVT 404



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 74/177 (41%), Gaps = 3/177 (1%)

Query: 467 DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCD---SKTPLGTPTYNTVLHSLVEAQ 523
           +M   NI  +  +   L+ AL  EG ++E      +      P    TY ++L    + Q
Sbjct: 252 EMILKNINPNVYTYAILIDALCKEGKVKEAKNLLAEMHYRGQPADVVTYTSLLDGFCKNQ 311

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
              +A  +F +MK  GI PN  TY  +ID        K A  L   ++  G      TY 
Sbjct: 312 NLDKATALFMKMKEWGIQPNKYTYTALIDGLCKGGRLKDAQKLFQDLLVKGCCIDVCTYN 371

Query: 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQM 640
            +I  L   G  DEAL +   +   G   +V+ +  I++   +K   D  E ++ +M
Sbjct: 372 VMIGGLCKEGMLDEALAIKSKMEDNGCIPNVVTFEIIIRSLFKKDENDKAEKLLHEM 428



 Score = 39.3 bits (90), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 67/158 (42%), Gaps = 5/158 (3%)

Query: 44  MGLNEESISKATQMQIVDALC-RGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPD 102
           +G    +I+  T M+    LC +GE  ++ H    +      +    +  +LN   +  +
Sbjct: 116 LGYQPNTITLTTLMK---GLCLKGEVQKSVHFHDKVVAQGFQMNQVSYGTLLNGLCKIGE 172

Query: 103 PLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYN 162
               ++  RM+E+   GLN   Y  ++  LCK   + EA +    +  R GI+P +  Y 
Sbjct: 173 TRCAIKFLRMIEDSSTGLNVVMYNTIIDGLCKDKLVNEAYDFYSEMNAR-GIFPNVITYT 231

Query: 163 SFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELL 200
           + +G       +  A   L+ M  + +  N  TY  L+
Sbjct: 232 TLIGGFCLAGQLTGAFSLLNEMILKNINPNVYTYAILI 269


>gi|52548293|gb|AAU82142.1| pentatricopeptide (PPR) repeat-containing [uncultured archaeon
           GZfos10C7]
          Length = 752

 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 93/368 (25%), Positives = 159/368 (43%), Gaps = 37/368 (10%)

Query: 308 NSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIA 367
           +S  A +++  +Q  GL P   TY+  I+      G +  ++    M++  + P   T  
Sbjct: 270 DSSTARKILKSIQDAGLTPDIFTYNMLIKKTRDYDGAKAWVDT---MREEGIWPNVVTYN 326

Query: 368 TLSVECSKALELDLAEALLDQI-SRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-L 425
           TL     KA   + A+AL+D +      P  F+         D  E AI +   MR++ +
Sbjct: 327 TL---IDKAPSYNEAKALVDTMREEAIKPDDFTYNTLIKKAPDYDE-AIALVDTMREETI 382

Query: 426 RPDIRTYELLFSL---FGNVNAPY----EEG---NMFSQ---VDSAKRINAIE---MDMA 469
           +PDI TY  L      +  VNA      EEG   N+F+    +D A   N  +     M 
Sbjct: 383 KPDIVTYTTLIKKAPDYDKVNALVAMMQEEGIRPNVFTYSELIDKAPDYNEAKSWVYKMR 442

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAM 529
              I  +  +   L+K        +  ++   +        TY+ ++    +A + + A 
Sbjct: 443 EEVISPNVFTYTRLIKKAPDYDGAKACVETMREESIWPNVFTYSELID---KAPDYNEAK 499

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
               +M+  GI PN  TY  +I        +   +ALV+MM  +G  P  +TY  LI+  
Sbjct: 500 SWVYKMREEGIKPNIVTYTTLIKKAP---DYAKVNALVAMMREEGILPNVVTYNTLIEKA 556

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649
            DY   DEA   ++ +  E +  D+  YNT++KKA +    D  + ++  M +  +QP+ 
Sbjct: 557 PDY---DEANVWMETMKEENVQPDIFTYNTLIKKAPD---YDEAKALVGTMRRESIQPNV 610

Query: 650 STCHFVFS 657
            T + +FS
Sbjct: 611 FTYNTLFS 618



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 79/166 (47%), Gaps = 12/166 (7%)

Query: 483 LLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPP 542
           L+ ++      R++++   D+       TYN ++    + ++   A      M+  GI P
Sbjct: 264 LMSSISDSSTARKILKSIQDAGLTPDIFTYNMLIK---KTRDYDGAKAWVDTMREEGIWP 320

Query: 543 NAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL 602
           N  TYN +ID       +  A ALV  M  +   P   TY  LIK   DY   DEA+ L+
Sbjct: 321 NVVTYNTLIDKAP---SYNEAKALVDTMREEAIKPDDFTYNTLIKKAPDY---DEAIALV 374

Query: 603 DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
           D +  E I  D++ Y T++KKA +  +++    ++  M +  ++P+
Sbjct: 375 DTMREETIKPDIVTYTTLIKKAPDYDKVNA---LVAMMQEEGIRPN 417


>gi|115482066|ref|NP_001064626.1| Os10g0421800 [Oryza sativa Japonica Group]
 gi|113639235|dbj|BAF26540.1| Os10g0421800, partial [Oryza sativa Japonica Group]
          Length = 973

 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 84/403 (20%), Positives = 176/403 (43%), Gaps = 26/403 (6%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           +S++  I   G+ +    A +++ +M++ G +P   T+   I+ +     + +  +V   
Sbjct: 266 YSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWK 325

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPER 413
           M++++ KP   T  TL  +     +      + + +          A+ A  D + +  R
Sbjct: 326 MKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGR 385

Query: 414 ---AIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVD-SAKRINAIEMDM 468
              A+++F +M+QK + P+  +Y  L S F   +   +   +F  +D    + N     +
Sbjct: 386 VFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHGPKPNGYTHVL 445

Query: 469 ARNNIQHSHISMKNLLKA--LGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESH 526
             N    S  S+K + +   + ++G++ +++               N VL  L ++    
Sbjct: 446 FINYYGKSGESIKAIQRYELMKSKGIVPDVV-------------AGNAVLFGLAKSGRLG 492

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
            A  +F ++K  G+ P+  TY +MI CCS    F  A  +   M+ +   P  +   +LI
Sbjct: 493 MAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLI 552

Query: 587 KILLDYGDFDEALNL---LDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
             L   G  DEA  +   L  ++LE  P D   YNT+L     +G++  +  ++E+M+ +
Sbjct: 553 DTLYKAGRGDEAWRIFYQLKEMNLE--PTDG-TYNTLLAGLGREGKVKEVMHLLEEMYHS 609

Query: 644 KVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
              P+  T + +       G  N A++ L  ++ +    ++S+
Sbjct: 610 NYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSS 652



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 91/443 (20%), Positives = 178/443 (40%), Gaps = 62/443 (13%)

Query: 220 IKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGK---LYINRTSEGRLRSSR 276
           + H + S   + + +    R+ D+   ++ +Q  +  A +G    ++     EG LRS+ 
Sbjct: 121 VAHTTASCNYMLELMRGHGRVGDMAEVFDVMQRQIVKANVGTFAAIFGGLGVEGGLRSA- 179

Query: 277 LDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIR 336
              P+   ALPVMK                                G+  +++TY+G + 
Sbjct: 180 ---PV---ALPVMK------------------------------EAGIVLNAYTYNGLVY 203

Query: 337 AIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI-SRCTNP 395
            +V     R  +EV ++M  + + P   T + L V   K  +++    LL ++ +    P
Sbjct: 204 FLVKSGFDREALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKP 263

Query: 396 KPFSAFLAACDTMDKPER---AIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNM 451
             +S +      + + +R   A +I AKM  +  +PD+ T+ +L  +  +     +  ++
Sbjct: 264 NVYS-YTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDV 322

Query: 452 FSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPL---G 508
           F +             M +++ +   ++   LL   G  G  + +++ +   K       
Sbjct: 323 FWK-------------MKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDN 369

Query: 509 TPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVS 568
              Y  V+ +L +      A+E+F +MK  GI P   +YN +I        F  A  L  
Sbjct: 370 VVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFK 429

Query: 569 MMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
            M   G  P   T+   I      G+  +A+   +L+  +GI  DV+  N +L    + G
Sbjct: 430 HMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSG 489

Query: 629 RIDVIEFIIEQMHQNKVQPDPST 651
           R+ + + +  ++    V PD  T
Sbjct: 490 RLGMAKRVFHELKAMGVSPDTIT 512



 Score = 76.3 bits (186), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 128/649 (19%), Positives = 254/649 (39%), Gaps = 54/649 (8%)

Query: 55  TQMQIVDALCRGER-SRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMM 113
           T   ++  LC   R S A  +   +  +        +  +L+    + D   VME W  M
Sbjct: 302 THTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAM 361

Query: 114 EEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHS 173
           +      N   Y  ++ ALC+ G + EA  +   + ++ GI P    YNS +    K   
Sbjct: 362 KADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQK-GIVPEQYSYNSLISGFLKADR 420

Query: 174 MVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWE-DYIKHYSL--SIFSL 230
              A      MD  + G     YT +L +  + K+  ++  I   + +K   +   + + 
Sbjct: 421 FGDALELFKHMD--IHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAG 478

Query: 231 RKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRL--RSSRLDIPIPL----- 283
              ++   +   L  A      + A+ +     I  T   +   ++S+ D  + +     
Sbjct: 479 NAVLFGLAKSGRLGMAKRVFHELKAMGVSPDT-ITYTMMIKCCSKASKFDEAVKIFYDMI 537

Query: 284 --NALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSD 341
             N +P +  +  S  D ++  GR      A ++  Q++ + L+P+  TY+  +  +  +
Sbjct: 538 ENNCVPDVLAVN-SLIDTLYKAGRGDE---AWRIFYQLKEMNLEPTDGTYNTLLAGLGRE 593

Query: 342 RGLRNGMEVLKIMQQNNLKPQDSTIAT-LSVECSKALELDLAEALLDQISRCTNPKPFSA 400
             ++  M +L+ M  +N  P   T  T L   C      D  + L    ++   P   S+
Sbjct: 594 GKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPD-LSS 652

Query: 401 FLAACDTMDKPER---AIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMF----- 452
           +      + K ER   A  IF +M++ L PD  T   +   F  +    E  ++      
Sbjct: 653 YNTVIYGLVKEERYNEAFSIFCQMKKVLIPDYATLCTILPSFVKIGLMKEALHIIKDYFL 712

Query: 453 ---SQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGA---EGMIRELIQYFCDSK-- 504
              S+ D +   + +E  + +  I+ S I    ++ + G    +  +  LI++ C  K  
Sbjct: 713 QPGSKTDRSSCHSLMEGILKKAGIEKS-IEFAEIIASSGITLDDFFLCPLIKHLCKQKKA 771

Query: 505 --------------TPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIM 550
                           L T  YN+++  LV+      A  +F +MK  G  P+  TYN++
Sbjct: 772 LEAHELVKKFKSFGVSLKTGLYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLL 831

Query: 551 IDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGI 610
           +D        +    +   M R G+    +TY  +I  L+     ++A++L   +  +G 
Sbjct: 832 LDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGF 891

Query: 611 PHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
                 Y  +L    + GRI+  E +  +M +   + + +  + + +G+
Sbjct: 892 SPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGH 940



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 97/206 (47%), Gaps = 3/206 (1%)

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIREL---IQYFCDSKTPLGTPTYNTVLHSLVEAQE 524
           M R  ++ +  +   +   LG EG +R     +    ++   L   TYN +++ LV++  
Sbjct: 151 MQRQIVKANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLVYFLVKSGF 210

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
              A+E+++ M   G+ P+  TY++++      R  ++   L+  M   G  P   +YT 
Sbjct: 211 DREALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTI 270

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
            I++L     FDEA  +L  +  EG   DV+ +  +++  C+ GRI   + +  +M ++ 
Sbjct: 271 CIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSD 330

Query: 645 VQPDPSTCHFVFSGYVNCGFHNSAME 670
            +PD  T   +   + + G   S ME
Sbjct: 331 QKPDRVTYITLLDKFGDNGDSQSVME 356



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 122/600 (20%), Positives = 230/600 (38%), Gaps = 72/600 (12%)

Query: 112 MMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKL 171
           +M+E  I LN   Y  ++  L K G+  EA   +Y +    G+ P +  Y+  + A  K 
Sbjct: 185 VMKEAGIVLNAYTYNGLVYFLVKSGFDREALE-VYRVMMVDGVVPSVRTYSVLMVAFGKR 243

Query: 172 HSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIW---------EDYIKH 222
             +      L  M++  V  N  +YT  +++    K     + I           D I H
Sbjct: 244 RDVETVLWLLREMEAHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITH 303

Query: 223 YSLSIFSLRKFVWSFTRLRDLKSAYETLQ-------HMVALAMMGKLYINRTSEGRLRSS 275
             L      + +    R+ D K  +  ++        +  + ++ K   N  S+     S
Sbjct: 304 TVLI-----QVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQ-----S 353

Query: 276 RLDIPIPLNALPVMKVLRW-----SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHT 330
            ++I    NA   MK   +     +++ VI A  +      A ++  +M+  G+ P  ++
Sbjct: 354 VMEI---WNA---MKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYS 407

Query: 331 YDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL---------SVECSKALELDL 381
           Y+  I   +      + +E+ K M  +  KP   T             S++  +  EL  
Sbjct: 408 YNSLISGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMK 467

Query: 382 AEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFG 440
           ++ ++  +         +A L       +   A ++F +++   + PD  TY ++     
Sbjct: 468 SKGIVPDVV------AGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCS 521

Query: 441 NVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYF 500
                       S+ D A +I     DM  NN     +++ +L+  L   G   E  + F
Sbjct: 522 KA----------SKFDEAVKIF---YDMIENNCVPDVLAVNSLIDTLYKAGRGDEAWRIF 568

Query: 501 CDSKTPLGTPT---YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSII 557
              K     PT   YNT+L  L    +    M + ++M     PPN  TYN ++DC    
Sbjct: 569 YQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKN 628

Query: 558 RCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLY 617
                A  ++  M   G  P   +Y  +I  L+    ++EA ++   +    IP D    
Sbjct: 629 GAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQMKKVLIP-DYATL 687

Query: 618 NTILKKACEKGRI-DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
            TIL    + G + + +  I +   Q   + D S+CH +  G +       ++E  ++++
Sbjct: 688 CTILPSFVKIGLMKEALHIIKDYFLQPGSKTDRSSCHSLMEGILKKAGIEKSIEFAEIIA 747


>gi|449462543|ref|XP_004149000.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic-like [Cucumis sativus]
          Length = 822

 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 100/447 (22%), Positives = 183/447 (40%), Gaps = 43/447 (9%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           +SF++VI+A  +      A +L ++M+ LG+ P+  TY+  I  +  +  L N  E+ + 
Sbjct: 244 FSFTNVINALCKGGKMENAIELFMKMEKLGISPNVVTYNCIINGLCQNGRLDNAFELKEK 303

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPKP--FSAFLAACDTMDK 410
           M    ++P   T   L     K    D    +LD+ I    NP    F+  +     M  
Sbjct: 304 MTVKGVQPNLKTYGALINGLIKLNFFDKVNHVLDEMIGSGFNPNVVVFNNLIDGYCKMGN 363

Query: 411 PERAIKIFAKMRQK-LRP-DIRTYELLFSLFGNVNAPYEEG---------------NMFS 453
            E A+KI   M  K + P  +  Y L+     +    + E                N +S
Sbjct: 364 IEGALKIKDVMISKNITPTSVTLYSLMQGFCKSDQIEHAENALEEILSSGLSIHPDNCYS 423

Query: 454 QVD---------SAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGM---IRELIQYFC 501
            V          SA R   +   M   N + S + +  L+  L  +G      EL     
Sbjct: 424 VVHWLCKKFRYHSAFRFTKM---MLSRNFRPSDLLLTMLVCGLCKDGKHLEATELWFRLL 480

Query: 502 DSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI-DCCS---II 557
           +  +P    T N ++H L  A +   A  I K+M   G+P +  TYN +I   C+   + 
Sbjct: 481 EKGSPASKVTSNALIHGLCGAGKLPEASRIVKEMLERGLPMDRITYNALILGFCNEGKVE 540

Query: 558 RCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLY 617
            CF+    L   M + G  P   TY  L++ L + G  D+A+ L D     G+  ++  Y
Sbjct: 541 GCFR----LREEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTY 596

Query: 618 NTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSM 677
             +++  C+  RI+ +E +  ++   K++ +    + +   +   G   +A++ L+ +  
Sbjct: 597 GIMMEGYCKANRIEDVENLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKS 656

Query: 678 RMLCEEVSTLEEKRSDFEDLILAEDSE 704
           + +    +T         ++ L ED++
Sbjct: 657 KGILPNCATYSSLIHGVCNIGLVEDAK 683



 Score = 80.5 bits (197), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 120/577 (20%), Positives = 232/577 (40%), Gaps = 51/577 (8%)

Query: 90  FFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLG 149
           F +++N   +       +E +  ME+  I  N   Y  ++  LC+ G L+ A  L   + 
Sbjct: 246 FTNVINALCKGGKMENAIELFMKMEKLGISPNVVTYNCIINGLCQNGRLDNAFELKEKMT 305

Query: 150 ERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNL 209
            + G+ P L  Y + +    KL+     N  LD M       N V +  L+       N+
Sbjct: 306 VK-GVQPNLKTYGALINGLIKLNFFDKVNHVLDEMIGSGFNPNVVVFNNLIDGYCKMGNI 364

Query: 210 SAVHEIWEDYI-KHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTS 268
               +I +  I K+ + +  +L   +  F +   ++ A   L+ ++              
Sbjct: 365 EGALKIKDVMISKNITPTSVTLYSLMQGFCKSDQIEHAENALEEIL-------------- 410

Query: 269 EGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSS 328
                SS L I  P N   V+  L   F        R  ++    ++ML   S   +PS 
Sbjct: 411 -----SSGLSIH-PDNCYSVVHWLCKKF--------RYHSAFRFTKMML---SRNFRPSD 453

Query: 329 HTYDGFIRAIVSDRGLRNGMEV-LKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLD 387
                 +  +  D       E+  +++++ +   + ++ A +   C  A +L  A  ++ 
Sbjct: 454 LLLTMLVCGLCKDGKHLEATELWFRLLEKGSPASKVTSNALIHGLCG-AGKLPEASRIVK 512

Query: 388 QISRCTNPK---PFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVN 443
           ++     P     ++A +       K E   ++  +M ++ ++PDI TY  L     NV 
Sbjct: 513 EMLERGLPMDRITYNALILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYNFLLRGLCNVG 572

Query: 444 APYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDS 503
              +   ++ +  ++  I+         NI    I M+   KA   E  +  L       
Sbjct: 573 KLDDAIKLWDEFKASGLIS---------NIHTYGIMMEGYCKANRIED-VENLFNELLSK 622

Query: 504 KTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSA 563
           K  L +  YN ++ +  +      A+++ + MK+ GI PN ATY+ +I     I   + A
Sbjct: 623 KMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDA 682

Query: 564 SALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEA-LNLLDLVSLEGIPHDVLLYNTILK 622
             L+  M ++GF P  + YTALI      G  D A    L+++S    P+    Y  ++ 
Sbjct: 683 KHLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHPNK-FTYTVMID 741

Query: 623 KACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
             C+ G ++    ++ +M ++ + PD  T + + +G+
Sbjct: 742 GYCKLGNMEKANNLLIKMKESGIVPDVVTYNVLTNGF 778



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 65/155 (41%), Gaps = 21/155 (13%)

Query: 528 AMEIFKQMKTCGIPPNAATYNIMID----------CCSIIRCFKSASALVSMMVRDGFYP 577
           A+++F  +   G  P+  T N ++           CC + R           ++ +G  P
Sbjct: 193 AVDVFYLLARKGTFPSLKTCNFLLSSLVKANEFEKCCEVFR-----------VMSEGACP 241

Query: 578 QTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFII 637
              ++T +I  L   G  + A+ L   +   GI  +V+ YN I+   C+ GR+D    + 
Sbjct: 242 DVFSFTNVINALCKGGKMENAIELFMKMEKLGISPNVVTYNCIINGLCQNGRLDNAFELK 301

Query: 638 EQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEAL 672
           E+M    VQP+  T   + +G +   F +     L
Sbjct: 302 EKMTVKGVQPNLKTYGALINGLIKLNFFDKVNHVL 336



 Score = 45.4 bits (106), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 82/444 (18%), Positives = 179/444 (40%), Gaps = 22/444 (4%)

Query: 10  FQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGER- 68
           F  + D +CK         N+   L++ + +  +  +   S++  + MQ     C+ ++ 
Sbjct: 351 FNNLIDGYCK-------MGNIEGALKI-KDVMISKNITPTSVTLYSLMQ---GFCKSDQI 399

Query: 69  SRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLM 128
             A + L  +  +  S+  D+ + ++++  +           +MM  +    ++    ++
Sbjct: 400 EHAENALEEILSSGLSIHPDNCYSVVHWLCKKFRYHSAFRFTKMMLSRNFRPSDLLLTML 459

Query: 129 MQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRM 188
           +  LCK G   EA+ L + L E+ G        N+ +        +  A+  +  M  R 
Sbjct: 460 VCGLCKDGKHLEATELWFRLLEK-GSPASKVTSNALIHGLCGAGKLPEASRIVKEMLERG 518

Query: 189 VGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH-YSLSIFSLRKFVWSFTRLRDLKSAY 247
           +  + +TY  L+     +  +     + E+  K      I++    +     +  L  A 
Sbjct: 519 LPMDRITYNALILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAI 578

Query: 248 ETLQHMVALAMMGKLYI-NRTSEGRLRSSRL-DIPIPLNAL--PVMKVLRWSFSDVIHAC 303
           +      A  ++  ++      EG  +++R+ D+    N L    M++    ++ +I A 
Sbjct: 579 KLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKKMELNSIVYNIIIKAH 638

Query: 304 GRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQD 363
            +  N   A QL+  M+S G+ P+  TY   I  + +   + +   ++  M++    P  
Sbjct: 639 CQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNV 698

Query: 364 STIATLSVECSKALELDLAEA-LLDQISRCTNPKPF--SAFLAACDTMDKPERAIKIFAK 420
                L     K  ++D AE+  L+ IS   +P  F  +  +     +   E+A  +  K
Sbjct: 699 VCYTALIGGYCKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGNMEKANNLLIK 758

Query: 421 MRQK-LRPDIRTYELLFSLFGNVN 443
           M++  + PD+ TY +L + F   N
Sbjct: 759 MKESGIVPDVVTYNVLTNGFCKAN 782



 Score = 44.3 bits (103), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 1/92 (1%)

Query: 109 TWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGAC 168
           TW  M    I  N   Y +M+   CK G +E+A+NL+  + E  GI P +  YN      
Sbjct: 720 TWLEMISFNIHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKES-GIVPDVVTYNVLTNGF 778

Query: 169 AKLHSMVHANLCLDLMDSRMVGKNEVTYTELL 200
            K + M +A    D M +  +  +E+TYT L+
Sbjct: 779 CKANDMDNAFKVCDQMATEGLPVDEITYTTLV 810


>gi|413953163|gb|AFW85812.1| hypothetical protein ZEAMMB73_202457 [Zea mays]
          Length = 731

 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 79/366 (21%), Positives = 152/366 (41%), Gaps = 22/366 (6%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A +    M S G+ P+ +TY+  +RA+      +  + +L+ M+     P   T  TL  
Sbjct: 174 ARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVA 233

Query: 372 ECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDKPERAIKIFAKM-RQKLR 426
              +A E+D AE L+  + R    KP    F++ +       K E A K+F +M R+ L 
Sbjct: 234 AFFRAGEVDGAERLVGMM-REGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMVREGLA 292

Query: 427 PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKA 486
           PD  +Y  L   +      +E  ++F++             M +  I    ++  +L+  
Sbjct: 293 PDGVSYNTLVGGYCKAGCSHEALSVFAE-------------MTQKGIMPDVVTFTSLIHV 339

Query: 487 LGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPN 543
           +   G +     L++   +    +   T+  ++    +      A+   + MK C I P+
Sbjct: 340 MCKAGNLERAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMKQCRIKPS 399

Query: 544 AATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLD 603
              YN +I+   ++     A  L+  M   G  P  +TY+ +I       D   A  L  
Sbjct: 400 VVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQ 459

Query: 604 LVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
            +  +G+  D + Y+++++  C + R+     + + M +  +QPD  T   +  G+   G
Sbjct: 460 QMLEKGVLPDAITYSSLIRVLCGEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEG 519

Query: 664 FHNSAM 669
              SA+
Sbjct: 520 NVESAL 525



 Score = 75.9 bits (185), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 81/383 (21%), Positives = 162/383 (42%), Gaps = 32/383 (8%)

Query: 294 WSFSDVIHA-CGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
           ++++ ++ A CGR      A  ++  M+  G  P+  TY+  + A      +     ++ 
Sbjct: 191 YTYNILVRALCGRGHRKE-ALSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVG 249

Query: 353 IMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMD 409
           +M++  LKP   T  ++     KA +++ A  + D++ R     +   ++  +       
Sbjct: 250 MMREGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMVREGLAPDGVSYNTLVGGYCKAG 309

Query: 410 KPERAIKIFAKMRQK-LRPDIRTYELLFSLF---GN-------VNAPYEEGNMFSQVDSA 458
               A+ +FA+M QK + PD+ T+  L  +    GN       V    E G   ++V   
Sbjct: 310 CSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFT 369

Query: 459 KRINAI------------EMDMARNNIQHSHISMKNLLKA---LGAEGMIRELIQYFCDS 503
             I+                 M +  I+ S +    L+     +G     REL+      
Sbjct: 370 ALIDGFCKKGFLDDALLAVRGMKQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAK 429

Query: 504 KTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSA 563
                  TY+T++ +  +  ++H A E+ +QM   G+ P+A TY+ +I      +    A
Sbjct: 430 GLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCGEKRLSDA 489

Query: 564 SALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKK 623
             L   M++ G  P   TYT+LI      G+ + AL+L D +   G+  DV+ Y+ ++  
Sbjct: 490 HVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVESALSLHDKMVKAGVLPDVVTYSVLING 549

Query: 624 ACEKGR-IDVIEFIIEQMHQNKV 645
             +  R ++  + + +  H++ +
Sbjct: 550 LSKSARAMEAQQLLFKLYHEDPI 572



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 92/194 (47%), Gaps = 3/194 (1%)

Query: 483 LLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCG 539
           L++AL   G  +E +    D +     P   TYNT++ +   A E   A  +   M+  G
Sbjct: 196 LVRALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMREGG 255

Query: 540 IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEAL 599
           + PN  T+N M++        + A  +   MVR+G  P  ++Y  L+      G   EAL
Sbjct: 256 LKPNLVTFNSMVNGMCKAGKMEDARKVFDEMVREGLAPDGVSYNTLVGGYCKAGCSHEAL 315

Query: 600 NLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
           ++   ++ +GI  DV+ + +++   C+ G ++    ++ QM +  +Q +  T   +  G+
Sbjct: 316 SVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTALIDGF 375

Query: 660 VNCGFHNSAMEALQ 673
              GF + A+ A++
Sbjct: 376 CKKGFLDDALLAVR 389



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 88/176 (50%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           T+N++++ + +A +   A ++F +M   G+ P+  +YN ++       C   A ++ + M
Sbjct: 262 TFNSMVNGMCKAGKMEDARKVFDEMVREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEM 321

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
            + G  P  +T+T+LI ++   G+ + A+ L+  +   G+  + + +  ++   C+KG +
Sbjct: 322 TQKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFL 381

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           D     +  M Q +++P     + + +GY   G  + A E L  +  + L  +V T
Sbjct: 382 DDALLAVRGMKQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVT 437



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 84/177 (47%), Gaps = 1/177 (0%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
            YN VL +L +A  +  A   F  M + G+ PN  TYNI++         K A +++  M
Sbjct: 158 AYNAVLLALSDASLT-SARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEALSILRDM 216

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
              G  P  +TY  L+      G+ D A  L+ ++   G+  +++ +N+++   C+ G++
Sbjct: 217 RGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMREGGLKPNLVTFNSMVNGMCKAGKM 276

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTL 687
           +    + ++M +  + PD  + + +  GY   G  + A+     ++ + +  +V T 
Sbjct: 277 EDARKVFDEMVREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTF 333



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 116/622 (18%), Positives = 223/622 (35%), Gaps = 133/622 (21%)

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
           M    +  N   Y ++++ALC  G+ +EA +++  +    G  P +  YN+ + A  +  
Sbjct: 181 MLSDGVAPNVYTYNILVRALCGRGHRKEALSILRDM-RGAGCGPNVVTYNTLVAAFFRAG 239

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH-YSLSIFSLR 231
            +  A   + +M    +  N VT+  ++        +    +++++ ++   +    S  
Sbjct: 240 EVDGAERLVGMMREGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMVREGLAPDGVSYN 299

Query: 232 KFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKV 291
             V  + +      A      M    +M  +                             
Sbjct: 300 TLVGGYCKAGCSHEALSVFAEMTQKGIMPDVV---------------------------- 331

Query: 292 LRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVL 351
              +F+ +IH   +  N   A  L+ QM+  GLQ +  T+   I        L + +  +
Sbjct: 332 ---TFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAV 388

Query: 352 KIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKP 411
           + M+Q  +KP        SV C                        ++A +     + + 
Sbjct: 389 RGMKQCRIKP--------SVVC------------------------YNALINGYCMVGRM 416

Query: 412 ERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           + A ++  +M  K L+PD+ TY  + S +                              +
Sbjct: 417 DEARELLHEMEAKGLKPDVVTYSTIISAY-----------------------------CK 447

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAME 530
           N   HS   +    + +  +G++ + I Y             ++++  L   +    A  
Sbjct: 448 NCDTHSAFELN---QQMLEKGVLPDAITY-------------SSLIRVLCGEKRLSDAHV 491

Query: 531 IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590
           +FK M   G+ P+  TY  +ID        +SA +L   MV+ G  P  +TY+ LI  L 
Sbjct: 492 LFKNMIKLGLQPDEFTYTSLIDGHCKEGNVESALSLHDKMVKAGVLPDVVTYSVLINGLS 551

Query: 591 DYGDFDEALNLL-DLVSLEGIP----HDVLLYN----------TILKKACEKGRIDVIEF 635
                 EA  LL  L   + IP    +D L++            +LK  C KG ++  + 
Sbjct: 552 KSARAMEAQQLLFKLYHEDPIPANTKYDALMHCCRKAELKSVLALLKGFCMKGLMNEADK 611

Query: 636 IIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEAL----QVLSMRMLCEEVSTLEEKR 691
           + + M       D S    +  G+   G   + M+AL    Q+L         ST+   R
Sbjct: 612 VYQSMLDRNWNLDGSVYSVLIHGHCRAG---NVMKALSFHKQMLQGGFAPNSTSTISLIR 668

Query: 692 SDFEDLILAEDSEAESRILQFC 713
             FE+ ++ E  +   ++L +C
Sbjct: 669 GLFENGMVVEADQVIQQLLNYC 690



 Score = 40.8 bits (94), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 65/135 (48%), Gaps = 13/135 (9%)

Query: 111 RMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAK 170
           R M++  I  +  CY  ++   C  G ++EA  L++ + E  G+ P +  Y++ + A  K
Sbjct: 389 RGMKQCRIKPSVVCYNALINGYCMVGRMDEARELLHEM-EAKGLKPDVVTYSTIISAYCK 447

Query: 171 ---LHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSI 227
               HS    N     M  + V  + +TY+ L+++   +K LS  H ++++ IK      
Sbjct: 448 NCDTHSAFELN---QQMLEKGVLPDAITYSSLIRVLCGEKRLSDAHVLFKNMIK------ 498

Query: 228 FSLRKFVWSFTRLRD 242
             L+   +++T L D
Sbjct: 499 LGLQPDEFTYTSLID 513


>gi|218197756|gb|EEC80183.1| hypothetical protein OsI_22045 [Oryza sativa Indica Group]
          Length = 577

 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 79/370 (21%), Positives = 139/370 (37%), Gaps = 55/370 (14%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNG--MEVLKIMQQNNLKPQDSTIATL 369
           A QL+  M+   ++P   +++  I A      L  G  +E+L  ++Q  L+P   T  TL
Sbjct: 13  ARQLLDAMRDQDIEPDLVSFNTLINARAKSGCLAAGVALELLHEVRQAGLRPDAITYNTL 72

Query: 370 SVECSKALELDLAEALLDQI--SRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRP 427
              CS+   LD A A+ +++  S C                                 RP
Sbjct: 73  ISACSQGSNLDDAVAVFEEMIASEC---------------------------------RP 99

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL 487
           D+ TY  + S+ G      E   MF +             +     Q   ++  +LL A 
Sbjct: 100 DLWTYNAMVSVHGRCGKAQEAELMFKE-------------LVEKGFQPDAVTYNSLLYAF 146

Query: 488 GAEGMIRELIQYFCDSKTPLG----TPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPN 543
             EG + E ++  C+     G      TYNT++H   +      A+ ++ +M+  G  P+
Sbjct: 147 AKEGDV-ERVERVCEELVKAGFRKDGITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPD 205

Query: 544 AATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLD 603
           A TY +++D    +     A  ++  M   G  P  +T++ALI      G  D+A    D
Sbjct: 206 AVTYTVLVDSLGKMDRISEAGKVLEEMADAGLKPTLVTFSALICAYAKSGRQDDAERTFD 265

Query: 604 LVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
            +   G+  D L Y  +L           +  +   M ++  +PD      + +      
Sbjct: 266 RMVESGVKPDRLAYLVMLDVFARSDETRKLMVLYRAMIKDGYKPDDGLYQVLLAALAKGN 325

Query: 664 FHNSAMEALQ 673
            H+     +Q
Sbjct: 326 EHDEIEGVIQ 335



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 73/347 (21%), Positives = 145/347 (41%), Gaps = 39/347 (11%)

Query: 295 SFSDVIHACGRTQ--NSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
           SF+ +I+A  ++    +G+A +L+ +++  GL+P + TY+  I A      L + + V +
Sbjct: 31  SFNTLINARAKSGCLAAGVALELLHEVRQAGLRPDAITYNTLISACSQGSNLDDAVAVFE 90

Query: 353 IMQQNNLKPQDSTI-ATLSV--ECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMD 409
            M  +  +P   T  A +SV   C KA E +L    L +     +   +++ L A     
Sbjct: 91  EMIASECRPDLWTYNAMVSVHGRCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEG 150

Query: 410 KPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
             ER  ++  ++ +   R D  TY  +  ++G +      G +   +     + AI    
Sbjct: 151 DVERVERVCEELVKAGFRKDGITYNTMIHMYGKM------GRLDLALGLYDEMRAI---- 200

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQES 525
                    ++   L+ +LG    I E   +++   D+       T++ ++ +  ++   
Sbjct: 201 ---GCTPDAVTYTVLVDSLGKMDRISEAGKVLEEMADAGLKPTLVTFSALICAYAKSGRQ 257

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
             A   F +M   G+ P+   Y +M+D  +     +    L   M++DG+ P    Y  L
Sbjct: 258 DDAERTFDRMVESGVKPDRLAYLVMLDVFARSDETRKLMVLYRAMIKDGYKPDDGLYQVL 317

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDV--------LLYNTILKKA 624
           +  L    + DE         +EG+  D+        L+ ++IL KA
Sbjct: 318 LAALAKGNEHDE---------IEGVIQDMEAVFEMNPLVISSILIKA 355


>gi|302775294|ref|XP_002971064.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
 gi|300161046|gb|EFJ27662.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
          Length = 814

 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 123/595 (20%), Positives = 223/595 (37%), Gaps = 90/595 (15%)

Query: 128 MMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSR 187
           M++ L K   ++EA   ++   E+ G  P    YN+ +   AK      A   LD M ++
Sbjct: 231 MVRTLLKAKRVKEARE-VFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAK 289

Query: 188 MVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAY 247
                EVTY  L+        L    E++                 V + +  R     Y
Sbjct: 290 ACVPTEVTYGILVNSLCKAGTLERAEELFR----------------VMAASGFRPNSVIY 333

Query: 248 ETLQHMVALAMMGKLYINRTSEGRLRS--SRLDIPIPLNALPVMKVLRWSFSDVIHACGR 305
            +L H  A              GR++   S  D  +     P +     + + +I    +
Sbjct: 334 TSLIHGFA------------KSGRMKEACSLFDEMVEAGYRPDV----ITHTVMIDGLCK 377

Query: 306 TQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDST 365
           + N   A +   +M   G +P+  TY   I+ +     + N   ++K M  +   P   T
Sbjct: 378 SGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVT 437

Query: 366 IATLSVECSKALELDLAEALLDQISRCT---NPKPFSAFL-------------------- 402
              L     K   LD A  LLD++ +C+   N + +S+ +                    
Sbjct: 438 YICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVNGLCDGGSVEKTLDDLFEQS 497

Query: 403 -AACDTMD---------------KPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAP 445
            AA +T+D               + + A +IF +M  +  +PD  TY +L +        
Sbjct: 498 KAAAETLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILIN-------- 549

Query: 446 YEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKT 505
              G   S+ +  +R  A+  D+ +       ++   L   L   G +   ++   ++ +
Sbjct: 550 ---GLCRSRENRVERAFALLHDLEKVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASS 606

Query: 506 ---PLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKS 562
                    Y  +   L    +  RA+ +F++M   G  P+AA Y  +I+    ++  + 
Sbjct: 607 RGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKVKKLED 666

Query: 563 ASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEG-IPHDVLLYNTIL 621
           A      M+  G  P   TYTAL++ L   G+ DEA +  + +   G +   V++Y+ ++
Sbjct: 667 ACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFESMLARGELVGSVMIYDALI 726

Query: 622 KKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
              C+  ++D    + E M      P   T   +F G V  G    A E LQ ++
Sbjct: 727 HGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGKTEKAQELLQEMA 781



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 78/363 (21%), Positives = 142/363 (39%), Gaps = 50/363 (13%)

Query: 318 QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKAL 377
           +M   G+ P++ +++  IR+    R   + +   +IM++   KP   T   L V+C    
Sbjct: 144 EMLKAGIAPNTFSFNILIRSFARTRRADDAVTCFEIMKRKRCKPDLHTFLIL-VDC---- 198

Query: 378 ELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK--LRPDIRTYELL 435
              L +A +D                        E+A ++F +M     + PD   +  +
Sbjct: 199 ---LCKAGMD------------------------EKAFEVFHEMMAMGFVPPDRALHTAM 231

Query: 436 FSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRE 495
                      E   +F Q             M +       I+   ++  L   G  +E
Sbjct: 232 VRTLLKAKRVKEAREVFGQ-------------MEKCGFPPDAIAYNTMIDGLAKAGHAQE 278

Query: 496 LIQYFCDSKTPLGTPT---YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID 552
            ++   +       PT   Y  +++SL +A    RA E+F+ M   G  PN+  Y  +I 
Sbjct: 279 ALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIH 338

Query: 553 CCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPH 612
             +     K A +L   MV  G+ P  +T+T +I  L   G+F++A    + +   G   
Sbjct: 339 GFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKP 398

Query: 613 DVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEAL 672
           +V+ Y TI++   + GR+     I++ M  +   PD  T   +  G+   G  + A + L
Sbjct: 399 NVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLL 458

Query: 673 QVL 675
             L
Sbjct: 459 DEL 461



 Score = 48.1 bits (113), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 37/169 (21%), Positives = 70/169 (41%), Gaps = 1/169 (0%)

Query: 509 TPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVS 568
           T ++N ++ S    + +  A+  F+ MK     P+  T+ I++DC       + A  +  
Sbjct: 154 TFSFNILIRSFARTRRADDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFH 213

Query: 569 MMVRDGFYPQTMT-YTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEK 627
            M+  GF P     +TA+++ LL      EA  +   +   G P D + YNT++    + 
Sbjct: 214 EMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKA 273

Query: 628 GRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
           G       +++ M      P   T   + +     G    A E  +V++
Sbjct: 274 GHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMA 322


>gi|147742764|gb|ABQ50546.1| hypothetical protein [Brassica rapa]
          Length = 650

 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 74/358 (20%), Positives = 153/358 (42%), Gaps = 28/358 (7%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A  L+ +M + G QP+  TY   +  +       + +++L+ M+   +KP   T   +  
Sbjct: 214 AVDLIARMMANGCQPNQFTYGPILNRMCKSGNTASALDLLRKMEHRKIKPHVVTYTIIID 273

Query: 372 ECSKALELDLAEALLDQISRC---TNPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLRP 427
              K   LD A +   ++       N   +++ + +  +  + +   ++   M  +K+ P
Sbjct: 274 NLCKDGRLDDALSFFSEMETKGIKANVFTYNSLIGSFCSFGRWDDGAQLLRDMITRKITP 333

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL 487
           ++ T+  L      +++  +EG +    D       +  +M    I+ + I+  +L+  L
Sbjct: 334 NVVTFSAL------IDSLVKEGKLTEAKD-------LYNEMITRGIEPNTITYNSLIYGL 380

Query: 488 -------GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGI 540
                   A  M+  ++   CD        TYN +++   +A++    M +F++M   G+
Sbjct: 381 CNDKRLDEANQMMDLMVSKGCDPDIW----TYNILINGFCKAKQVDDGMRLFRKMSLRGM 436

Query: 541 PPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALN 600
             +  TY+ +I      R    A  +   MV  G +P  MTY  L+  L D G+ +EAL 
Sbjct: 437 IADTVTYSTLIQGFCQSRKLIVAKKVFQEMVSQGVHPGIMTYAILLDGLCDNGELEEALG 496

Query: 601 LLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
           +LD +    +  D+ +YN I+   C   ++D    +   +    V+ D  + + + SG
Sbjct: 497 ILDQMHKCKMELDIGIYNIIIHGMCNANKVDDAWSLFCSLPSKGVKRDIQSYNIMLSG 554



 Score = 76.6 bits (187), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 81/396 (20%), Positives = 169/396 (42%), Gaps = 23/396 (5%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           ++ + +I+   R +  G A   M ++  LG +P++ T++  +  +  +  +   +E++  
Sbjct: 126 YTLNIMINCFCRRRKLGFAFSAMGKIFKLGYEPNTVTFNTLLNGLCLEGRVFEAVELVDC 185

Query: 354 MQQNNLKPQDSTIATL-SVECSKALELDLAEALLDQISRCTNPKPFS--AFLAACDTMDK 410
           M  +   P   T+ T+ +  C K    +  + +   ++    P  F+    L        
Sbjct: 186 MVLSQHVPDLITLNTIVNGLCLKDRVSEAVDLIARMMANGCQPNQFTYGPILNRMCKSGN 245

Query: 411 PERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
              A+ +  KM  +K++P + TY ++           +  + FS++++            
Sbjct: 246 TASALDLLRKMEHRKIKPHVVTYTIIIDNLCKDGRLDDALSFFSEMET------------ 293

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESH 526
              I+ +  +  +L+ +  + G   +  Q   D  T   TP   T++ ++ SLV+  +  
Sbjct: 294 -KGIKANVFTYNSLIGSFCSFGRWDDGAQLLRDMITRKITPNVVTFSALIDSLVKEGKLT 352

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
            A +++ +M T GI PN  TYN +I      +    A+ ++ +MV  G  P   TY  LI
Sbjct: 353 EAKDLYNEMITRGIEPNTITYNSLIYGLCNDKRLDEANQMMDLMVSKGCDPDIWTYNILI 412

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
                    D+ + L   +SL G+  D + Y+T+++  C+  ++ V + + ++M    V 
Sbjct: 413 NGFCKAKQVDDGMRLFRKMSLRGMIADTVTYSTLIQGFCQSRKLIVAKKVFQEMVSQGVH 472

Query: 647 PDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCE 682
           P   T   +  G  + G      EAL +L     C+
Sbjct: 473 PGIMTYAILLDGLCDNG---ELEEALGILDQMHKCK 505



 Score = 76.3 bits (186), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 103/515 (20%), Positives = 200/515 (38%), Gaps = 75/515 (14%)

Query: 40  LTTTMGLNEESISKATQMQIVDALCRGER-SRASHLLLNLGHAHHSLGADDFFHILNYCA 98
           L   M L++      T   IV+ LC  +R S A  L+  +           +  ILN   
Sbjct: 182 LVDCMVLSQHVPDLITLNTIVNGLCLKDRVSEAVDLIARMMANGCQPNQFTYGPILNRMC 241

Query: 99  RSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPIL 158
           +S +    ++  R ME ++I  +   Y +++  LCK G L++A +    + E  GI   +
Sbjct: 242 KSGNTASALDLLRKMEHRKIKPHVVTYTIIIDNLCKDGRLDDALSFFSEM-ETKGIKANV 300

Query: 159 PVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWED 218
             YNS +G+             L  M +R +  N VT++ L+   V +  L+   +++ +
Sbjct: 301 FTYNSLIGSFCSFGRWDDGAQLLRDMITRKITPNVVTFSALIDSLVKEGKLTEAKDLYNE 360

Query: 219 YI-KHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRL 277
            I +    +  +    ++     + L  A + +  MV+                 +    
Sbjct: 361 MITRGIEPNTITYNSLIYGLCNDKRLDEANQMMDLMVS-----------------KGCDP 403

Query: 278 DIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRA 337
           DI              W+++ +I+   + +      +L  +M   G+   + TY   I+ 
Sbjct: 404 DI--------------WTYNILINGFCKAKQVDDGMRLFRKMSLRGMIADTVTYSTLIQG 449

Query: 338 IVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP 397
               R L    +V + M    + P   T A L        EL+ A  +LDQ+ +C     
Sbjct: 450 FCQSRKLIVAKKVFQEMVSQGVHPGIMTYAILLDGLCDNGELEEALGILDQMHKC----- 504

Query: 398 FSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDS 457
                                     K+  DI  Y ++     N N   +  ++F  + S
Sbjct: 505 --------------------------KMELDIGIYNIIIHGMCNANKVDDAWSLFCSLPS 538

Query: 458 AKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLH 517
                 ++ D+   NI  S +  ++ L    A+ + R++ +   D   P G  TYNT++ 
Sbjct: 539 ----KGVKRDIQSYNIMLSGLCKRSSLSE--ADALFRKMKE---DGYEPDGC-TYNTLIR 588

Query: 518 SLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID 552
           + +   +   ++++ ++MK CG   +A+T  I++D
Sbjct: 589 AHLRGNDITTSVQLIEEMKRCGFSSDASTVKIVMD 623



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 92/195 (47%), Gaps = 5/195 (2%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC-CSIIRCFKSASALVSM 569
           TY  ++ +L +      A+  F +M+T GI  N  TYN +I   CS  R    A  L  M
Sbjct: 267 TYTIIIDNLCKDGRLDDALSFFSEMETKGIKANVFTYNSLIGSFCSFGRWDDGAQLLRDM 326

Query: 570 MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
           + R    P  +T++ALI  L+  G   EA +L + +   GI  + + YN+++   C   R
Sbjct: 327 ITRK-ITPNVVTFSALIDSLVKEGKLTEAKDLYNEMITRGIEPNTITYNSLIYGLCNDKR 385

Query: 630 IDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMR-MLCEEV--ST 686
           +D    +++ M      PD  T + + +G+      +  M   + +S+R M+ + V  ST
Sbjct: 386 LDEANQMMDLMVSKGCDPDIWTYNILINGFCKAKQVDDGMRLFRKMSLRGMIADTVTYST 445

Query: 687 LEEKRSDFEDLILAE 701
           L +       LI+A+
Sbjct: 446 LIQGFCQSRKLIVAK 460



 Score = 63.2 bits (152), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 84/182 (46%), Gaps = 1/182 (0%)

Query: 506 PLGTPT-YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSAS 564
           PL T   +N +   L   ++    + + KQM+  GI  +  T NIMI+C    R    A 
Sbjct: 86  PLPTVIDFNRLFGLLARTKQYDLVLALCKQMELKGIAYDLYTLNIMINCFCRRRKLGFAF 145

Query: 565 ALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKA 624
           + +  + + G+ P T+T+  L+  L   G   EA+ L+D + L     D++  NTI+   
Sbjct: 146 SAMGKIFKLGYEPNTVTFNTLLNGLCLEGRVFEAVELVDCMVLSQHVPDLITLNTIVNGL 205

Query: 625 CEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEV 684
           C K R+     +I +M  N  QP+  T   + +     G   SA++ L+ +  R +   V
Sbjct: 206 CLKDRVSEAVDLIARMMANGCQPNQFTYGPILNRMCKSGNTASALDLLRKMEHRKIKPHV 265

Query: 685 ST 686
            T
Sbjct: 266 VT 267



 Score = 59.3 bits (142), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 69/325 (21%), Positives = 124/325 (38%), Gaps = 29/325 (8%)

Query: 318 QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKAL 377
           +M++ G++ +  TY+  I +  S     +G ++L+ M    + P   T + L     K  
Sbjct: 290 EMETKGIKANVFTYNSLIGSFCSFGRWDDGAQLLRDMITRKITPNVVTFSALIDSLVKEG 349

Query: 378 ELDLAEALLDQ-ISRCTNPKPF---SAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYE 433
           +L  A+ L ++ I+R   P      S     C+     E    +   + +   PDI TY 
Sbjct: 350 KLTEAKDLYNEMITRGIEPNTITYNSLIYGLCNDKRLDEANQMMDLMVSKGCDPDIWTYN 409

Query: 434 LLFSLFGNVNAPYEEGNMFSQVD--------------------SAKRINA--IEMDMARN 471
           +L + F       +   +F ++                     S K I A  +  +M   
Sbjct: 410 ILINGFCKAKQVDDGMRLFRKMSLRGMIADTVTYSTLIQGFCQSRKLIVAKKVFQEMVSQ 469

Query: 472 NIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRA 528
            +    ++   LL  L   G + E   ++      K  L    YN ++H +  A +   A
Sbjct: 470 GVHPGIMTYAILLDGLCDNGELEEALGILDQMHKCKMELDIGIYNIIIHGMCNANKVDDA 529

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
             +F  + + G+  +  +YNIM+           A AL   M  DG+ P   TY  LI+ 
Sbjct: 530 WSLFCSLPSKGVKRDIQSYNIMLSGLCKRSSLSEADALFRKMKEDGYEPDGCTYNTLIRA 589

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHD 613
            L   D   ++ L++ +   G   D
Sbjct: 590 HLRGNDITTSVQLIEEMKRCGFSSD 614


>gi|15242557|ref|NP_195906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181167|sp|Q9LYZ9.1|PP362_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g02860
 gi|7413561|emb|CAB86040.1| putative protein [Arabidopsis thaliana]
 gi|332003145|gb|AED90528.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 819

 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 95/442 (21%), Positives = 165/442 (37%), Gaps = 71/442 (16%)

Query: 289 MKVLRWSFSDVIHAC-----GRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRG 343
           MK   +S+  V +       G++     A +++ +M   G  PS  TY+  I A   D  
Sbjct: 305 MKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGM 364

Query: 344 LRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FS 399
           L   ME+   M +   KP   T  TL     +A +++ A ++ +++ R    KP    F+
Sbjct: 365 LDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEM-RNAGCKPNICTFN 423

Query: 400 AFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSA 458
           AF+       K    +KIF ++    L PDI T+  L ++FG      E   +F ++  A
Sbjct: 424 AFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRA 483

Query: 459 ----------------KRINAIEMDMA------RNNIQHSHISMKNLLKALGAEGMIRE- 495
                            R  + E  M          +     +   +L AL   GM  + 
Sbjct: 484 GFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQS 543

Query: 496 --LIQYFCDSKTPLGTPTYNTVLHSLVEAQE----------------SHRAM-------- 529
             ++    D +      TY ++LH+    +E                  RA+        
Sbjct: 544 EKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLV 603

Query: 530 -----------EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQ 578
                        F ++K  G  P+  T N M+      +    A+ ++  M   GF P 
Sbjct: 604 CSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPS 663

Query: 579 TMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIE 638
             TY +L+ +     DF ++  +L  +  +GI  D++ YNT++   C   R+     I  
Sbjct: 664 MATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFS 723

Query: 639 QMHQNKVQPDPSTCHFVFSGYV 660
           +M  + + PD  T +     Y 
Sbjct: 724 EMRNSGIVPDVITYNTFIGSYA 745



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 92/455 (20%), Positives = 172/455 (37%), Gaps = 69/455 (15%)

Query: 299 VIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNN 358
           +I   G+      A  +   +Q  G     ++Y   I A  +    R  + V K M+++ 
Sbjct: 179 IISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEDG 238

Query: 359 LKPQDSTI-ATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKPERA 414
            KP   T    L+V        +   +L++++       +   ++  +  C      + A
Sbjct: 239 CKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEA 298

Query: 415 IKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNI 473
            ++F +M+      D  TY  L  ++G  + P E         + K +N    +M  N  
Sbjct: 299 AQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKE---------AMKVLN----EMVLNGF 345

Query: 474 QHSHISMKNLLKALGAEGMIRELIQY---FCDSKTPLGTPTYNTVLHSLVEAQESHRAME 530
             S ++  +L+ A   +GM+ E ++      +  T     TY T+L     A +   AM 
Sbjct: 346 SPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMS 405

Query: 531 IFKQMKTCGIPPNAATYNIMI-------------------DCC----------SIIRCF- 560
           IF++M+  G  PN  T+N  I                   + C          +++  F 
Sbjct: 406 IFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFG 465

Query: 561 -----KSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVL 615
                   S +   M R GF P+  T+  LI      G F++A+ +   +   G+  D+ 
Sbjct: 466 QNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLS 525

Query: 616 LYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVN---CGFHNSAME-- 670
            YNT+L      G  +  E ++ +M   + +P+  T   +   Y N    G  +S  E  
Sbjct: 526 TYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEV 585

Query: 671 --------ALQVLSMRMLCEEVSTLEEKRSDFEDL 697
                   A+ + ++ ++C +   L E    F +L
Sbjct: 586 YSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSEL 620



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 82/344 (23%), Positives = 146/344 (42%), Gaps = 28/344 (8%)

Query: 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
           R +F+ +I A  R  +   A  +  +M   G+ P   TY+  + A+          +VL 
Sbjct: 489 RETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLA 548

Query: 353 IMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI-SRCTNP-----KPFSAFLAACD 406
            M+    KP + T  +L    +   E+ L  +L +++ S    P     K      + CD
Sbjct: 549 EMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCD 608

Query: 407 TMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIE 465
            + + ERA   F++++++   PDI T   + S++G      +   +   +D  K      
Sbjct: 609 LLPEAERA---FSELKERGFSPDITTLNSMVSIYGRRQMVAKANGV---LDYMKERGFTP 662

Query: 466 MDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQES 525
                N++ + H    +  K+   E ++RE++             +YNTV+++       
Sbjct: 663 SMATYNSLMYMHSRSADFGKS---EEILREILA----KGIKPDIISYNTVIYAYCRNTRM 715

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
             A  IF +M+  GI P+  TYN  I   +    F+ A  +V  M++ G  P   TY ++
Sbjct: 716 RDASRIFSEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSI 775

Query: 586 IKILLDYGDFDEA-LNLLDLVSLEGIPH-----DVLLYNTILKK 623
           +         DEA L + DL +L+  PH     D+ L   I+KK
Sbjct: 776 VDGYCKLNRKDEAKLFVEDLRNLD--PHAPKGEDLRLLERIVKK 817


>gi|3080374|emb|CAA18631.1| putative protein [Arabidopsis thaliana]
 gi|7268739|emb|CAB78946.1| putative protein [Arabidopsis thaliana]
          Length = 814

 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 120/566 (21%), Positives = 219/566 (38%), Gaps = 77/566 (13%)

Query: 119 GLNNKCYLLM--MQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSF---LGACAKLHS 173
           G++   YL    + A CKGG +EEA  L   + E  G+ P +  +N+    LG C +   
Sbjct: 244 GVSPDVYLFTTAINAFCKGGKVEEAVKLFSKM-EEAGVAPNVVTFNTVIDGLGMCGRYD- 301

Query: 174 MVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKF 233
              A +  + M  R +    +TY+ L+K                                
Sbjct: 302 --EAFMFKEKMVERGMEPTLITYSILVK-------------------------------- 327

Query: 234 VWSFTRLRDLKSAYETLQHMVALAMMGKLYI-NRTSEGRLRSSRLDIPIPLNALPVMKVL 292
               TR + +  AY  L+ M        + + N   +  + +  L+  I +  L V K L
Sbjct: 328 --GLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGL 385

Query: 293 RWS---FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGME 349
             +   ++ +I    +   +  AE+L+ +M S+G   +  ++   I  + S     + + 
Sbjct: 386 SLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALR 445

Query: 350 VLKIMQQNNLKPQDSTIATL-SVEC-----SKALELDLAEALLDQISRCTNPKPFSAFLA 403
            +  M   N+ P    + TL S  C     SKALEL      L++     + +  +A L 
Sbjct: 446 FVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQ--FLNK-GFVVDTRTSNALLH 502

Query: 404 ACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINA 463
                 K + A +I  ++  +               G V        + S     K+++ 
Sbjct: 503 GLCEAGKLDEAFRIQKEILGR---------------GCVMDRVSYNTLISGCCGKKKLDE 547

Query: 464 IEM---DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLH 517
             M   +M +  ++  + +   L+  L     + E IQ++ D K     P   TY+ ++ 
Sbjct: 548 AFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMID 607

Query: 518 SLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYP 577
              +A+ +    E F +M +  + PN   YN +I           A  L   M   G  P
Sbjct: 608 GCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISP 667

Query: 578 QTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFII 637
            + TYT+LIK +      +EA  L + + +EG+  +V  Y  ++    + G++  +E ++
Sbjct: 668 NSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLL 727

Query: 638 EQMHQNKVQPDPSTCHFVFSGYVNCG 663
            +MH   V P+  T   +  GY   G
Sbjct: 728 REMHSKNVHPNKITYTVMIGGYARDG 753



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 88/385 (22%), Positives = 154/385 (40%), Gaps = 33/385 (8%)

Query: 298 DVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQN 357
           D +  CGR   + + ++ M++    G++P+  TY   ++ +   + + +   VLK M + 
Sbjct: 292 DGLGMCGRYDEAFMFKEKMVER---GMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKK 348

Query: 358 NLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKI 417
              P       L     +A  L+ A  + D +      K  S   +  +T+      IK 
Sbjct: 349 GFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMV----SKGLSLTSSTYNTL------IKG 398

Query: 418 FAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQV---------DSAKRINAIEMDM 468
           + K  Q    + R  + + S+  NVN    +G+  S +         DSA R      +M
Sbjct: 399 YCKNGQADNAE-RLLKEMLSIGFNVN----QGSFTSVICLLCSHLMFDSALRFVG---EM 450

Query: 469 ARNNIQHSHISMKNLLKAL---GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQES 525
              N+      +  L+  L   G      EL   F +    + T T N +LH L EA + 
Sbjct: 451 LLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKL 510

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
             A  I K++   G   +  +YN +I  C   +    A   +  MV+ G  P   TY+ L
Sbjct: 511 DEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSIL 570

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           I  L +    +EA+   D     G+  DV  Y+ ++   C+  R +  +   ++M    V
Sbjct: 571 ICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNV 630

Query: 646 QPDPSTCHFVFSGYVNCGFHNSAME 670
           QP+    + +   Y   G  + A+E
Sbjct: 631 QPNTVVYNHLIRAYCRSGRLSMALE 655



 Score = 65.9 bits (159), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 77/162 (47%)

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           + T +++  +  +   A+++F +M+  G+ PN  T+N +ID   +   +  A      MV
Sbjct: 252 FTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMV 311

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
             G  P  +TY+ L+K L       +A  +L  ++ +G P +V++YN ++    E G ++
Sbjct: 312 ERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLN 371

Query: 632 VIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
               I + M    +    ST + +  GY   G  ++A   L+
Sbjct: 372 KAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLK 413



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 68/289 (23%), Positives = 129/289 (44%), Gaps = 21/289 (7%)

Query: 348 MEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPF---SAFLAA 404
           ++V  ++    + P  +T   L     +A E        D + +  +P  +   +A  A 
Sbjct: 200 LDVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCEAFDVVCKGVSPDVYLFTTAINAF 259

Query: 405 CDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINA 463
           C    K E A+K+F+KM +  + P++ T+  +    G +   Y+E  MF +         
Sbjct: 260 CKG-GKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLG-MCGRYDEAFMFKE-------KM 310

Query: 464 IEMDMARNNIQHSHISMKNLLKA--LG-AEGMIRELIQYFCDSKTPLGTPTYNTVLHSLV 520
           +E  M    I +S I +K L +A  +G A  +++E+ +       P     YN ++ S +
Sbjct: 311 VERGMEPTLITYS-ILVKGLTRAKRIGDAYFVLKEMTK----KGFPPNVIVYNNLIDSFI 365

Query: 521 EAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTM 580
           EA   ++A+EI   M + G+   ++TYN +I          +A  L+  M+  GF     
Sbjct: 366 EAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQG 425

Query: 581 TYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
           ++T++I +L  +  FD AL  +  + L  +     L  T++   C+ G+
Sbjct: 426 SFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGK 474



 Score = 44.7 bits (104), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 24/100 (24%), Positives = 47/100 (47%), Gaps = 1/100 (1%)

Query: 569 MMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
           ++   G +P   T   L+  L+   +F +     D+V  +G+  DV L+ T +   C+ G
Sbjct: 205 VLANKGMFPSKTTCNILLTSLVRANEFQKCCEAFDVVC-KGVSPDVYLFTTAINAFCKGG 263

Query: 629 RIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSA 668
           +++    +  +M +  V P+  T + V  G   CG ++ A
Sbjct: 264 KVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEA 303



 Score = 41.6 bits (96), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 30/133 (22%), Positives = 59/133 (44%), Gaps = 5/133 (3%)

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRC--FKSASALVSMMVRDGFYPQTMTYTAL 585
           A+++F  +   G+ P+  T NI++   S++R   F+       ++ + G  P    +T  
Sbjct: 199 ALDVFPVLANKGMFPSKTTCNILLT--SLVRANEFQKCCEAFDVVCK-GVSPDVYLFTTA 255

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           I      G  +EA+ L   +   G+  +V+ +NT++      GR D      E+M +  +
Sbjct: 256 INAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGM 315

Query: 646 QPDPSTCHFVFSG 658
           +P   T   +  G
Sbjct: 316 EPTLITYSILVKG 328


>gi|302772597|ref|XP_002969716.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
 gi|300162227|gb|EFJ28840.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
          Length = 457

 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 73/341 (21%), Positives = 133/341 (39%), Gaps = 22/341 (6%)

Query: 319 MQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALE 378
           M   G  P+++TY   +R++   +       V + M      P   + + L     +  +
Sbjct: 43  MLGAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQK 102

Query: 379 LDLAEALLDQI---SRCTNPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYEL 434
           +D A  LL+++       N   + + L+    M K + A+ +F++M  +   PD   Y +
Sbjct: 103 VDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNV 162

Query: 435 LFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIR 494
           L   F       E   +F +             M       +  +  +LL     +G   
Sbjct: 163 LIDGFSKKGDMGEAYRLFEE-------------MLEKGCIPTVFTYNSLLSGFSRKGEFG 209

Query: 495 ELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYN-IM 550
            +   F D       P   T+N +L    +  +   A  +F +M++ G PP+  +YN +M
Sbjct: 210 RVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLM 269

Query: 551 IDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGI 610
              CS  +  + A  L+  M+R G  P  ++Y  LI      G  D A+ L   +   G+
Sbjct: 270 RGMCSKGKPHE-AQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGL 328

Query: 611 PHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
             D   Y+TI+   C  G++     + + M  N   PD + 
Sbjct: 329 EPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAV 369



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 94/208 (45%), Gaps = 5/208 (2%)

Query: 467 DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCD---SKTPLGTPTYNTVLHSLVEAQ 523
           +M     Q + ++  +LL  L   G ++E +  F        P     YN ++    +  
Sbjct: 112 EMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKG 171

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
           +   A  +F++M   G  P   TYN ++   S    F    +L   M+R G  P   T+ 
Sbjct: 172 DMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFN 231

Query: 584 ALIKILLDYGDFDEALNL-LDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642
            L+      GD  EA  L L++ SL G P DV+ YNT+++  C KG+    + ++ +M +
Sbjct: 232 NLLDGFCKMGDMVEAHRLFLEMRSL-GCPPDVVSYNTLMRGMCSKGKPHEAQRLLREMIR 290

Query: 643 NKVQPDPSTCHFVFSGYVNCGFHNSAME 670
           + V PD  + + +  GY   G  + A++
Sbjct: 291 SGVGPDIVSYNILIDGYSKSGALDHAIK 318



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 80/362 (22%), Positives = 148/362 (40%), Gaps = 20/362 (5%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           +S+S +I    R Q    A +L+ +M   G QP+  TY   +  +     L+  +++   
Sbjct: 88  FSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSR 147

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPKPFS--AFLAACDTMDK 410
           M      P       L    SK  ++  A  L ++ + +   P  F+  + L+      +
Sbjct: 148 MVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGE 207

Query: 411 PERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
             R   +F  M RQ   P+I T+  L   F  +    E   +F ++ S         D+ 
Sbjct: 208 FGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSL----GCPPDVV 263

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAM 529
             N     +  K   K   A+ ++RE+I+    S       +YN ++    ++     A+
Sbjct: 264 SYNTLMRGMCSKG--KPHEAQRLLREMIR----SGVGPDIVSYNILIDGYSKSGALDHAI 317

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSM--MVRDGFYPQTMTYTALIK 587
           ++F ++   G+ P+A +Y+ +IDC  + R  K  +A V    M+ +G  P       L+ 
Sbjct: 318 KLFYEIPKSGLEPDAFSYSTIIDC--LCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVI 375

Query: 588 ILLDYGDFDEALNLLD-LVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
            L       E+  L   +V  E +P  +  YN ++ K C+  R D +  I  ++ +    
Sbjct: 376 GLCRGERLTESCELFQAMVKFECVPL-IPEYNLLMYKLCKAKRSDDVCEIFHELTERGFS 434

Query: 647 PD 648
           PD
Sbjct: 435 PD 436



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 64/153 (41%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           +Y+ ++  L   Q+   A E+  +M   G  PN  TY  ++     +   K A  L S M
Sbjct: 89  SYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRM 148

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           V  G  P  + Y  LI      GD  EA  L + +  +G    V  YN++L     KG  
Sbjct: 149 VYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEF 208

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
             ++ + + M +    P+  T + +  G+   G
Sbjct: 209 GRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMG 241



 Score = 52.8 bits (125), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 64/156 (41%)

Query: 508 GTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALV 567
           GT +YN +L  L ++         +  M   G  PN  TY  ++      + F+ A ++ 
Sbjct: 16  GTLSYNYLLEVLAKSGRCDHVYGTYNDMLGAGCVPNTYTYGYLLRSLCQAQRFEEARSVF 75

Query: 568 SMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEK 627
             M   G  P   +Y+ LI  L      DEA  LL+ +   G   +V+ Y ++L   C+ 
Sbjct: 76  RGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKM 135

Query: 628 GRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
           G++     +  +M      PD    + +  G+   G
Sbjct: 136 GKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKG 171


>gi|224713524|gb|ACN62069.1| PPR-814c [Zea mays]
          Length = 814

 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 76/316 (24%), Positives = 134/316 (42%), Gaps = 13/316 (4%)

Query: 359 LKPQDSTIATLSVECSKALELDLAEALLDQISRC---TNPKPFSAFLAACDTMDKPERAI 415
           L P   T A L   C++A   +LA A   Q+ R     N    +  L       + + A+
Sbjct: 107 LSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEAL 166

Query: 416 KIFAKMRQKLR--PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNI 473
            I      +L   PD+ +Y +L     +     +  ++   +     + +  + +A N +
Sbjct: 167 DILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNV-VAYNTV 225

Query: 474 QHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFK 533
                   ++ KA     + +E++Q       P    TYN+V+H+L +A+   +A    +
Sbjct: 226 IDGFFKEGDVNKACD---LFKEMVQ----RGIPPDLVTYNSVVHALCKARAMDKAEAFLR 278

Query: 534 QMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYG 593
           QM    + PN  TYN +I   S    +K A  +   M R    P  +T + L+  L  YG
Sbjct: 279 QMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYG 338

Query: 594 DFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCH 653
              EA ++ D ++++G   DV  YN +L     KG +  +  + + M  + + PD  T +
Sbjct: 339 KIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFN 398

Query: 654 FVFSGYVNCGFHNSAM 669
            +   Y NCG  + AM
Sbjct: 399 VLIKAYANCGMLDKAM 414



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 92/446 (20%), Positives = 170/446 (38%), Gaps = 38/446 (8%)

Query: 254 VALAMMGKL----------YINRTSEGRLRSSRLD--IPIPLNALPVMKVLR--WSFSDV 299
           +ALA  G+L            N   EG   + R D  + I L+  P +  +   +S+S +
Sbjct: 129 LALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSIL 188

Query: 300 IHACGRTQNSGLAEQLMLQMQSLG--LQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQN 357
           + +      SG A+ L+  M   G    P+   Y+  I     +  +    ++ K M Q 
Sbjct: 189 LKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQR 248

Query: 358 NLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKPERA 414
            + P   T  ++     KA  +D AEA L Q+       N   ++  +    +  + + A
Sbjct: 249 GIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEA 308

Query: 415 IKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNI 473
           +++F +MR+  + PD+ T  +L           E  ++F               MA    
Sbjct: 309 VRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDT-------------MAMKGQ 355

Query: 474 QHSHISMKNLLKALGAEGMIRELIQYF----CDSKTPLGTPTYNTVLHSLVEAQESHRAM 529
                S   +L     +G + ++   F     D   P    T+N ++ +        +AM
Sbjct: 356 NPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAP-DFYTFNVLIKAYANCGMLDKAM 414

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
            IF +M+  G+ P+  TY  +I     I     A    + M+  G  P    Y  LI+  
Sbjct: 415 IIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGF 474

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649
             +G   +A  L+  +   G+  D++ +++I+   C+ GR+   + I +      + PD 
Sbjct: 475 CTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDA 534

Query: 650 STCHFVFSGYVNCGFHNSAMEALQVL 675
                +  GY   G    A+     +
Sbjct: 535 VVYSMLMDGYCLVGKMEKALRVFDAM 560



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 84/407 (20%), Positives = 163/407 (40%), Gaps = 57/407 (14%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ V+HA  + +    AE  + QM +  + P++ TY+  I    S    +  + V K M
Sbjct: 256 TYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEM 315

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQIS-RCTNPKPFSAFL----------- 402
           +++++ P   T++ L     K  ++  A  + D ++ +  NP  FS  +           
Sbjct: 316 RRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCL 375

Query: 403 -----------------------------AACDTMDKPERAIKIFAKMR-QKLRPDIRTY 432
                                        A C  +DK   A+ IF +MR   ++PD+ TY
Sbjct: 376 VDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDK---AMIIFNEMRDHGVKPDVVTY 432

Query: 433 ELLFSLFGNVNAPYEEGNMFSQ-VDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEG 491
             + +    +    +    F+Q +D     +      A N +     +  +LLKA     
Sbjct: 433 RTVIAALCRIGKMDDAMEKFNQMIDQGVAPD----KYAYNCLIQGFCTHGSLLKA----- 483

Query: 492 MIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI 551
             +ELI    ++   L    +++++++L +      A  IF      G+ P+A  Y++++
Sbjct: 484 --KELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLM 541

Query: 552 DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIP 611
           D   ++   + A  +   MV  G  P  + Y  L+      G  DE L+L   +   GI 
Sbjct: 542 DGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIK 601

Query: 612 HDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
              +LY+ I+    + GR    +    +M ++ +  D  T + V  G
Sbjct: 602 PSTILYSIIIDGLFQAGRTVPAKVKFHEMTESGIAMDICTYNIVLRG 648



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 62/268 (23%), Positives = 118/268 (44%), Gaps = 20/268 (7%)

Query: 413 RAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471
           +A  +F +M Q+ + PD+ TY  +        A          +D A+   A    M   
Sbjct: 237 KACDLFKEMVQRGIPPDLVTYNSVVHALCKARA----------MDKAE---AFLRQMVNK 283

Query: 472 NIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRA 528
            +  ++ +  NL+    + G  +E ++ F + +     P   T + ++ SL +  +   A
Sbjct: 284 RVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEA 343

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
            ++F  M   G  P+  +YNIM++  +   C    + L  +M+ DG  P   T+  LIK 
Sbjct: 344 RDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKA 403

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
             + G  D+A+ + + +   G+  DV+ Y T++   C  G++D       QM    V PD
Sbjct: 404 YANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPD 463

Query: 649 PSTCHFVFSGYVNCGFHNSAMEALQVLS 676
               + +  G+     H S ++A +++S
Sbjct: 464 KYAYNCLIQGFCT---HGSLLKAKELIS 488



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 83/180 (46%), Gaps = 7/180 (3%)

Query: 513 NTVLHSLVEAQESHRAMEIF-KQMKTCGIPPNAATYNIMIDCCSIIRCFKSASA--LVSM 569
           N +L    EA+ +  A++I   +    G  P+  +Y+I++   S+    KS  A  L+ M
Sbjct: 150 NHLLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLK--SLCDQGKSGQADDLLRM 207

Query: 570 MVRDGFY--PQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEK 627
           M   G    P  + Y  +I      GD ++A +L   +   GIP D++ YN+++   C+ 
Sbjct: 208 MAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKA 267

Query: 628 GRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTL 687
             +D  E  + QM   +V P+  T + +  GY + G    A+   + +    +  +V TL
Sbjct: 268 RAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTL 327



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 119/572 (20%), Positives = 222/572 (38%), Gaps = 63/572 (11%)

Query: 108 ETWRMMEEKE--IGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFL 165
           +  RMM E       N   Y  ++    K G + +A +L   + +R GI P L  YNS +
Sbjct: 203 DLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQR-GIPPDLVTYNSVV 261

Query: 166 GACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELL----KLAVWQKNLSAVHEIWEDYIK 221
            A  K  +M  A   L  M ++ V  N  TY  L+        W++ +    E+    I 
Sbjct: 262 HALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSIL 321

Query: 222 HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGK---------LYINRTSEGRL 272
              +++  L   +  + ++++ +  ++T      +AM G+         +     ++G L
Sbjct: 322 PDVVTLSMLMGSLCKYGKIKEARDVFDT------MAMKGQNPDVFSYNIMLNGYATKGCL 375

Query: 273 --RSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLML---QMQSLGLQPS 327
              +   D+ +     P      ++F+ +I A     N G+ ++ M+   +M+  G++P 
Sbjct: 376 VDMTDLFDLMLGDGIAPDF----YTFNVLIKA---YANCGMLDKAMIIFNEMRDHGVKPD 428

Query: 328 SHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLD 387
             TY   I A+     + + ME    M    + P       L         L  A+ L+ 
Sbjct: 429 VVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELIS 488

Query: 388 QISRCTNPKPFSAFLAACDTMDKPER---AIKIF-AKMRQKLRPDIRTYELLFSLFGNVN 443
           +I           F +  + + K  R   A  IF   +   L PD   Y +L   +  V 
Sbjct: 489 EIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVG 548

Query: 444 APYEEGNMFSQVDSAK----------------RINAIE------MDMARNNIQHSHISMK 481
              +   +F  + SA                 +I  I+       +M +  I+ S I   
Sbjct: 549 KMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYS 608

Query: 482 NLLKALGAEG-MIRELIQY--FCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTC 538
            ++  L   G  +   +++    +S   +   TYN VL  L + +    A+ +FK+++  
Sbjct: 609 IIIDGLFQAGRTVPAKVKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAM 668

Query: 539 GIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEA 598
            +  N  T N MID     R  + A  L + + R    P  +TY+ +I  L+  G  +EA
Sbjct: 669 NVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVPSVVTYSIMITNLIKEGLVEEA 728

Query: 599 LNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
            ++   +   G   +  L N ++++  +K  I
Sbjct: 729 EDMFSSMQNAGCEPNSRLLNHVVRELLKKNEI 760



 Score = 48.5 bits (114), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 72/342 (21%), Positives = 119/342 (34%), Gaps = 81/342 (23%)

Query: 382 AEALLDQISRCTNP---KPFSAFLAA-------CDTMDKPERAIKIF------AKMRQKL 425
           A  LLD++ R   P   +  + FLAA             P  A+ +F      A+  + L
Sbjct: 48  AHDLLDELQRRGTPVLERDLNGFLAALARAPSSAACRSGPALAVALFNRAASRAQGPRVL 107

Query: 426 RPDIRTYELLFSLFGNVNAPYEEGNMFSQV-DSAKRINAI-------------EMDMARN 471
            P   TY +L       + P      F Q+  +  R+N I               D A +
Sbjct: 108 SPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEALD 167

Query: 472 NIQHSH---------ISMKNLLKAL---GAEGMIRELIQYFCDSKTPLGTP---TYNTVL 516
            + H            S   LLK+L   G  G   +L++   +    + +P    YNTV+
Sbjct: 168 ILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGA-VCSPNVVAYNTVI 226

Query: 517 HSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFY 576
               +  + ++A ++FK+M   GIPP+  TYN ++      R    A A +  MV     
Sbjct: 227 DGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVL 286

Query: 577 PQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFI 636
           P   TY  LI      G + EA+                                    +
Sbjct: 287 PNNWTYNNLIYGYSSTGQWKEAVR-----------------------------------V 311

Query: 637 IEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678
            ++M ++ + PD  T   +       G    A +    ++M+
Sbjct: 312 FKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMK 353


>gi|449519270|ref|XP_004166658.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g19440, chloroplastic-like [Cucumis sativus]
          Length = 799

 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 100/447 (22%), Positives = 183/447 (40%), Gaps = 43/447 (9%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           +SF++VI+A  +      A +L ++M+ LG+ P+  TY+  I  +  +  L N  E+ + 
Sbjct: 221 FSFTNVINALCKGGKMENAIELFMKMEKLGISPNVVTYNCIINGLCQNGRLDNAFELKEK 280

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPKP--FSAFLAACDTMDK 410
           M    ++P   T   L     K    D    +LD+ I    NP    F+  +     M  
Sbjct: 281 MTVKGVQPNLKTYGALINGLIKLNFFDKVNHILDEMIGAGFNPNVVVFNNLIDGYCKMGN 340

Query: 411 PERAIKIFAKMRQK-LRP-DIRTYELLFSLFGNVNAPYEEG---------------NMFS 453
            E A+KI   M  K + P  +  Y L+     +    + E                N +S
Sbjct: 341 IEGALKIKDVMISKNITPTSVTLYSLMQGFCKSDQIEHAENALEEILSSGLSIHPDNCYS 400

Query: 454 QVD---------SAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGM---IRELIQYFC 501
            V          SA R   +   M   N + S + +  L+  L  +G      EL     
Sbjct: 401 VVHWLCKKFRYHSAFRFTKM---MLSRNFRPSDLLLTMLVCGLCKDGKHLEATELWFRLL 457

Query: 502 DSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI-DCCS---II 557
           +  +P    T N ++H L  A +   A  I K+M   G+P +  TYN +I   C+   + 
Sbjct: 458 EKGSPASKVTSNALIHGLCGAGKLPEASRIVKEMLERGLPMDRITYNALILGFCNEGKVE 517

Query: 558 RCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLY 617
            CF+    L   M + G  P   TY  L++ L + G  D+A+ L D     G+  ++  Y
Sbjct: 518 GCFR----LREEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTY 573

Query: 618 NTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSM 677
             +++  C+  RI+ +E +  ++   K++ +    + +   +   G   +A++ L+ +  
Sbjct: 574 GIMMEGYCKANRIEDVENLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKS 633

Query: 678 RMLCEEVSTLEEKRSDFEDLILAEDSE 704
           + +    +T         ++ L ED++
Sbjct: 634 KGILPNCATYSSLIHGVCNIGLVEDAK 660



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 111/547 (20%), Positives = 229/547 (41%), Gaps = 32/547 (5%)

Query: 128 MMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSR 187
           ++ ALCKGG +E A  L   + E+ GI P +  YN  +    +   + +A    + M  +
Sbjct: 226 VINALCKGGKMENAIELFMKM-EKLGISPNVVTYNCIINGLCQNGRLDNAFELKEKMTVK 284

Query: 188 MVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYSLSIFSLRKFVWSFTRLRDLKSA 246
            V  N  TY  L+   +       V+ I ++ I   ++ ++      +  + ++ +++ A
Sbjct: 285 GVQPNLKTYGALINGLIKLNFFDKVNHILDEMIGAGFNPNVVVFNNLIDGYCKMGNIEGA 344

Query: 247 YETLQHMVALAMM-GKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFS-------D 298
            +    M++  +    + +    +G  +S +++     NAL   ++L    S        
Sbjct: 345 LKIKDVMISKNITPTSVTLYSLMQGFCKSDQIEHA--ENALE--EILSSGLSIHPDNCYS 400

Query: 299 VIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEV-LKIMQQN 357
           V+H   +      A +    M S   +PS       +  +  D       E+  +++++ 
Sbjct: 401 VVHWLCKKFRYHSAFRFTKMMLSRNFRPSDLLLTMLVCGLCKDGKHLEATELWFRLLEKG 460

Query: 358 NLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPK---PFSAFLAACDTMDKPERA 414
           +   + ++ A +   C  A +L  A  ++ ++     P     ++A +       K E  
Sbjct: 461 SPASKVTSNALIHGLCG-AGKLPEASRIVKEMLERGLPMDRITYNALILGFCNEGKVEGC 519

Query: 415 IKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNI 473
            ++  +M ++ ++PDI TY  L     NV    +   ++ +  ++  I+         NI
Sbjct: 520 FRLREEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLIS---------NI 570

Query: 474 QHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFK 533
               I M+   KA   E  +  L       K  L +  YN ++ +  +      A+++ +
Sbjct: 571 HTYGIMMEGYCKANRIED-VENLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLE 629

Query: 534 QMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYG 593
            MK+ GI PN ATY+ +I     I   + A  L+  M ++GF P  + YTALI      G
Sbjct: 630 NMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTALIGGYCKLG 689

Query: 594 DFDEA-LNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTC 652
             D A    L+++S    P+    Y  ++   C+ G ++    ++ +M ++ + PD  T 
Sbjct: 690 QMDTAESTWLEMISFNIHPNK-FTYTVMIDGYCKLGNMEKANNLLIKMKESGIVPDVVTY 748

Query: 653 HFVFSGY 659
           + + +G+
Sbjct: 749 NVLTNGF 755



 Score = 48.9 bits (115), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 60/142 (42%), Gaps = 12/142 (8%)

Query: 532 FKQMKTCGIPPNA-ATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590
           F  +KTC    ++    N    CC + R           ++ +G  P   ++T +I  L 
Sbjct: 183 FPSLKTCNFXLSSLVKANEFEKCCEVFR-----------VMSEGACPDVFSFTNVINALC 231

Query: 591 DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650
             G  + A+ L   +   GI  +V+ YN I+   C+ GR+D    + E+M    VQP+  
Sbjct: 232 KGGKMENAIELFMKMEKLGISPNVVTYNCIINGLCQNGRLDNAFELKEKMTVKGVQPNLK 291

Query: 651 TCHFVFSGYVNCGFHNSAMEAL 672
           T   + +G +   F +     L
Sbjct: 292 TYGALINGLIKLNFFDKVNHIL 313



 Score = 45.4 bits (106), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 82/444 (18%), Positives = 179/444 (40%), Gaps = 22/444 (4%)

Query: 10  FQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGER- 68
           F  + D +CK         N+   L++ + +  +  +   S++  + MQ     C+ ++ 
Sbjct: 328 FNNLIDGYCK-------MGNIEGALKI-KDVMISKNITPTSVTLYSLMQ---GFCKSDQI 376

Query: 69  SRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLM 128
             A + L  +  +  S+  D+ + ++++  +           +MM  +    ++    ++
Sbjct: 377 EHAENALEEILSSGLSIHPDNCYSVVHWLCKKFRYHSAFRFTKMMLSRNFRPSDLLLTML 436

Query: 129 MQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRM 188
           +  LCK G   EA+ L + L E+ G        N+ +        +  A+  +  M  R 
Sbjct: 437 VCGLCKDGKHLEATELWFRLLEK-GSPASKVTSNALIHGLCGAGKLPEASRIVKEMLERG 495

Query: 189 VGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH-YSLSIFSLRKFVWSFTRLRDLKSAY 247
           +  + +TY  L+     +  +     + E+  K      I++    +     +  L  A 
Sbjct: 496 LPMDRITYNALILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAI 555

Query: 248 ETLQHMVALAMMGKLYI-NRTSEGRLRSSRL-DIPIPLNAL--PVMKVLRWSFSDVIHAC 303
           +      A  ++  ++      EG  +++R+ D+    N L    M++    ++ +I A 
Sbjct: 556 KLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKKMELNSIVYNIIIKAH 615

Query: 304 GRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQD 363
            +  N   A QL+  M+S G+ P+  TY   I  + +   + +   ++  M++    P  
Sbjct: 616 CQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNV 675

Query: 364 STIATLSVECSKALELDLAEA-LLDQISRCTNPKPF--SAFLAACDTMDKPERAIKIFAK 420
                L     K  ++D AE+  L+ IS   +P  F  +  +     +   E+A  +  K
Sbjct: 676 VCYTALIGGYCKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGNMEKANNLLIK 735

Query: 421 MRQK-LRPDIRTYELLFSLFGNVN 443
           M++  + PD+ TY +L + F   N
Sbjct: 736 MKESGIVPDVVTYNVLTNGFCKAN 759



 Score = 44.3 bits (103), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 1/92 (1%)

Query: 109 TWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGAC 168
           TW  M    I  N   Y +M+   CK G +E+A+NL+  + E  GI P +  YN      
Sbjct: 697 TWLEMISFNIHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKES-GIVPDVVTYNVLTNGF 755

Query: 169 AKLHSMVHANLCLDLMDSRMVGKNEVTYTELL 200
            K + M +A    D M +  +  +E+TYT L+
Sbjct: 756 CKANDMDNAFKVCDQMATEGLPVDEITYTTLV 787


>gi|296087909|emb|CBI35192.3| unnamed protein product [Vitis vinifera]
          Length = 1001

 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 129/641 (20%), Positives = 240/641 (37%), Gaps = 111/641 (17%)

Query: 125 YLLMMQALCKGGYLEEASNLI-YFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDL 183
           +  +++ LC  G + EA +L    +GE  G  P +  Y + +    K   +  A      
Sbjct: 118 FTTLIRGLCVEGKIGEALHLFDKMIGE--GFQPNVVTYGTLINGLCKDRQVTEAFNIFSE 175

Query: 184 MDSRMVGKNEVTYTELL----KLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTR 239
           M ++ +  N VTY  L+    KL  W+   + ++E+ +  I      +F+L   V +  +
Sbjct: 176 MITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMP---DVFTLNTVVDALCK 232

Query: 240 LRDLKSAYETLQHMVALAMMGKLYI-NRTSEGRLRSSRLDIPIPLNALPVMK---VLRWS 295
              +  A++ +  M+   +   +   N   +G    + +D+ + +    V K       S
Sbjct: 233 EGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVIS 292

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           ++ +I+   + Q+   A  L  +M    L P++ TY+  I  +     L++ + +   M 
Sbjct: 293 YNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMV 352

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKP---E 412
                P   T  TLS    K   LD A ALL  I           +    D M +    E
Sbjct: 353 ARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELE 412

Query: 413 RAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAK------RINAIE 465
            A  +F+ +  K L+P++ TY ++           E   +FS+++           N I 
Sbjct: 413 DARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLIT 472

Query: 466 MDMARNNIQHSHISMKN----------------LLKALGAEGMIRELIQYFC---DSKTP 506
               RNN     I +                  L+  L  +G+ + + Q  C    S  P
Sbjct: 473 RGFLRNNEALRTIELLEEMLARGFSVDVSTTTLLVGMLSDDGLDQSVKQILCKPSSSSRP 532

Query: 507 LGT---------------------PTYNT-------------------------VLHSLV 520
            GT                     P +NT                         +L S+ 
Sbjct: 533 SGTQMRSLPPLFLSSSHNSLHSRSPHFNTLDDALSSFNRMLHMHPPPSTVDFTKLLTSIA 592

Query: 521 EAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC-CSIIRCFKSASALVSM---------- 569
           + +     + +  QM + GIPP+  T NI+I+  C + R   + S L  +          
Sbjct: 593 KMKHYSTVLSLSTQMDSFGIPPDVYTLNILINSFCHLRRLGYAFSVLAKLLKLGFQPDVV 652

Query: 570 -----------MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYN 618
                      M+  G  P   TY +LI  L +  ++     LL+ +    I  +V++++
Sbjct: 653 TYGTLMNGLCKMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFS 712

Query: 619 TILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
           T++   C++G I +   +++ M +  V+PD  T   +  G+
Sbjct: 713 TVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGH 753



 Score = 75.9 bits (185), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 85/404 (21%), Positives = 165/404 (40%), Gaps = 30/404 (7%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +F+ +I         G A  L  +M   G QP+  TY   I  +  DR +     +   M
Sbjct: 117 TFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKDRQVTEAFNIFSEM 176

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPKPFS---AFLAACDTMDK 410
               + P   T  +L     K  E      L+++ +     P  F+      A C     
Sbjct: 177 ITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMV 236

Query: 411 PERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI-------NA 463
            E    +   + + + P++ TY          NA  +   + ++VD A ++       + 
Sbjct: 237 AEAHDVVDMMIHRGVEPNVVTY----------NALMDGHCLRNEVDVAVKVFDTMVHKDC 286

Query: 464 IEMDMARNNIQHSHISMKNLLKALGA-EGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEA 522
           +   ++ N + + +  ++++ KA+   E M R+ +       TP  T TYNT++H L   
Sbjct: 287 VANVISYNTLINGYCKIQSVDKAMYLFEEMSRQEL-------TP-NTVTYNTLIHGLCHV 338

Query: 523 QESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTY 582
                A+ +F +M   G  P+  TY  + D     R    A AL+  +    + P    Y
Sbjct: 339 GRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIY 398

Query: 583 TALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642
           T ++  +   G+ ++A +L   +S +G+  +V  YN ++   C++G +     +  +M++
Sbjct: 399 TTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNK 458

Query: 643 NKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           N   P+  T + +  G++        +E L+ +  R    +VST
Sbjct: 459 NGCSPNDCTYNLITRGFLRNNEALRTIELLEEMLARGFSVDVST 502



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 78/380 (20%), Positives = 149/380 (39%), Gaps = 33/380 (8%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           F+ ++ +  + ++      L  QM S G+ P  +T +  I +    R L     VL  + 
Sbjct: 584 FTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILINSFCHLRRLGYAFSVLAKLL 643

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPF---SAFLAACDTMDKPE 412
           +   +P   T  TL               L   I++  +P  F   S   A C+  +   
Sbjct: 644 KLGFQPDVVTYGTL------------MNGLCKMITKGISPDIFTYNSLIHALCNLCEWKH 691

Query: 413 RAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNN 472
               +   +  K+ P++  +  +      V+A  +EG +      A   + ++M M +  
Sbjct: 692 VTTLLNEMVNSKIMPNVVVFSTV------VDALCKEGMI------AIAHDVVDM-MIKRG 738

Query: 473 IQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLG----TPTYNTVLHSLVEAQESHRA 528
           ++   ++   L+        + E ++ F D+    G      +YN +++   + Q   +A
Sbjct: 739 VEPDVVTYTALMDGHCLRSEMDEAVKVF-DTMVHKGCVPNVRSYNILINGYCQIQRMDKA 797

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
           M + +QM   G+  +  TYN +I     +   + A AL   MV  G  P  +TY  L+  
Sbjct: 798 MGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDY 857

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
           L       EA+ LL  +    +  D+L+YN  +   C  G ++    +   +    +QPD
Sbjct: 858 LCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARDLFSNLSSKGLQPD 917

Query: 649 PSTCHFVFSGYVNCGFHNSA 668
             T + +  G    G  + A
Sbjct: 918 VRTYNIMIHGLCKRGLLDEA 937



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 77/156 (49%), Gaps = 2/156 (1%)

Query: 504 KTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC-CSIIRCFKS 562
           + P  T  +N +L S+ + +     + + +QM + GIPP+  T  I+I+  C + R   +
Sbjct: 40  QPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAIVINSLCHLNRVDFA 99

Query: 563 ASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILK 622
            SAL  ++ + G  P   T+T LI+ L   G   EAL+L D +  EG   +V+ Y T++ 
Sbjct: 100 FSALAKIL-KLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLIN 158

Query: 623 KACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
             C+  ++     I  +M    + P+  T + +  G
Sbjct: 159 GLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHG 194


>gi|224123318|ref|XP_002319049.1| predicted protein [Populus trichocarpa]
 gi|222857425|gb|EEE94972.1| predicted protein [Populus trichocarpa]
          Length = 585

 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 82/376 (21%), Positives = 153/376 (40%), Gaps = 20/376 (5%)

Query: 318 QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKAL 377
           +M  LGLQP+  T+   +  + S   + + +++   + +    P   T  T+     K  
Sbjct: 131 KMFKLGLQPTHVTFGTLLNGLCSKAKIIDAVKLFDEIGKMGFAPSLITYTTIIKGLCKIG 190

Query: 378 ELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERA---IKIFAKM-RQKLRPDIRTYE 433
               A  LL ++          A+    D++ K  RA   +  F++M  Q + P++ TY 
Sbjct: 191 HTTNALQLLKKMEEKGCKPDVVAYNTVIDSLCKDRRANEAMYFFSEMVDQGIPPNVVTYS 250

Query: 434 LLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMI 493
            +   F N+    E  ++F Q             M   N+  + ++   L+  L  EGMI
Sbjct: 251 SILHGFCNLGQLNEATSLFKQ-------------MIGRNVMPNTVTFTILVDGLCKEGMI 297

Query: 494 ---RELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIM 550
              R + +   ++       TY+ ++       +   A ++F  M   G  P+   YNI+
Sbjct: 298 LEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQKLFDIMVGKGFAPSVRVYNIL 357

Query: 551 IDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGI 610
           I+     R    A  L+S M      P T+TY+ L++     G    A  L   +   G+
Sbjct: 358 INGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKLFKEMCSYGL 417

Query: 611 PHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAME 670
             D + Y+ +L   C+ G +D    +++ M ++K++P     + +  G  N G   +A E
Sbjct: 418 LPDSITYSILLDGLCKHGHLDEAFRLLKAMQESKIEPHICIYNILIQGMCNFGKLEAARE 477

Query: 671 ALQVLSMRMLCEEVST 686
               L ++ +   V T
Sbjct: 478 LFSNLFVKGIQPSVVT 493



 Score = 65.1 bits (157), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 114/544 (20%), Positives = 203/544 (37%), Gaps = 37/544 (6%)

Query: 131 ALCKGGYLEEASNL------IYFLGERYGIYPILPV--YNSFLGACAKL-HSMVHANLCL 181
           ++  GG+    +NL      +    +  GI P+ PV  +N  LG+  K  H     +LC 
Sbjct: 34  SITNGGFCSNYNNLHSVADAVASFNQLLGIRPLPPVVVFNKLLGSLVKKKHYSTVISLCK 93

Query: 182 DLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLR 241
             MD   +  N  T T L+   +   N   VH  +    K + L +      V   T L 
Sbjct: 94  Q-MDLSNIRPNVYTLTILIN-CLCHSNRDHVHFAFSALGKMFKLGLQPTH--VTFGTLLN 149

Query: 242 DLKSAYETLQHMVALAMMGKLYINRT--SEGRLRSSRLDIPIPLNALPVMKVLR------ 293
            L S  + +  +     +GK+    +  +   +      I    NAL ++K +       
Sbjct: 150 GLCSKAKIIDAVKLFDEIGKMGFAPSLITYTTIIKGLCKIGHTTNALQLLKKMEEKGCKP 209

Query: 294 --WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVL 351
              +++ VI +  + + +  A     +M   G+ P+  TY   +    +   L     + 
Sbjct: 210 DVVAYNTVIDSLCKDRRANEAMYFFSEMVDQGIPPNVVTYSSILHGFCNLGQLNEATSLF 269

Query: 352 KIMQQNNLKPQDSTIATL-SVECSKALELDLAEALLDQISRCTNPKPF--SAFLAACDTM 408
           K M   N+ P   T   L    C + + L+              P  +  SA +      
Sbjct: 270 KQMIGRNVMPNTVTFTILVDGLCKEGMILEARRVFEMMTENGVEPDAYTYSALMDGYCLQ 329

Query: 409 DKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMD 467
            + + A K+F  M  K   P +R Y +L +         E   + S++         + D
Sbjct: 330 SQMDEAQKLFDIMVGKGFAPSVRVYNILINGHCKSRRLNEAKTLLSEM--------YDRD 381

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHR 527
           +  + + +S + M+   +A G   + ++L +  C       + TY+ +L  L +      
Sbjct: 382 LTPDTVTYSTL-MQGFCQA-GRPQVAQKLFKEMCSYGLLPDSITYSILLDGLCKHGHLDE 439

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A  + K M+   I P+   YNI+I         ++A  L S +   G  P  +TYT +I 
Sbjct: 440 AFRLLKAMQESKIEPHICIYNILIQGMCNFGKLEAARELFSNLFVKGIQPSVVTYTVMIS 499

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
            LL  G  +EA  +   + + G   +   YN  ++     G       +IE+M       
Sbjct: 500 GLLKEGLSNEACEMFRKMVVNGCLPNSCTYNVAIQGFLRNGDPSNAVRLIEEMVGRGFSA 559

Query: 648 DPST 651
           D ST
Sbjct: 560 DSST 563


>gi|7529747|emb|CAB86932.1| putative protein [Arabidopsis thaliana]
 gi|24030379|gb|AAN41351.1| unknown protein [Arabidopsis thaliana]
          Length = 526

 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 80/388 (20%), Positives = 150/388 (38%), Gaps = 60/388 (15%)

Query: 294 WSFSDV-----IHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGM 348
           W+FS++     I A G+  N   AE+++  +  +G  P+  +Y   + +        N  
Sbjct: 78  WNFSEIDFLMLITAYGKLGNFNGAERVLSVLSKMGSTPNVISYTALMESYGRGGKCNNAE 137

Query: 349 EVLKIMQQNNLKPQDST---IATLSVECSKALELD-LAEALLDQISRCTNP--KPFSAFL 402
            + + MQ +  +P   T   I    VE  K  E + + E LLD+      P  K +   +
Sbjct: 138 AIFRRMQSSGPEPSAITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMI 197

Query: 403 AACDTMDKPERAIKIFAKMRQKLRPD-IRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI 461
                    E+A K+F+ M  K  P    TY  L S                   S K +
Sbjct: 198 YMYKKAGNYEKARKVFSSMVGKGVPQSTVTYNSLMSF----------------ETSYKEV 241

Query: 462 NAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVE 521
           + I   M R++IQ   +S   L+KA G                                 
Sbjct: 242 SKIYDQMQRSDIQPDVVSYALLIKAYG--------------------------------R 269

Query: 522 AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMT 581
           A+    A+ +F++M   G+ P    YNI++D  +I    + A  +   M RD  +P   +
Sbjct: 270 ARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWS 329

Query: 582 YTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMH 641
           YT ++   ++  D + A      + ++G   +++ Y T++K   +   ++ +  + E+M 
Sbjct: 330 YTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGTLIKGYAKANDVEKMMEVYEKMR 389

Query: 642 QNKVQPDPSTCHFVFSGYVNCGFHNSAM 669
            + ++ + +    +      C    SA+
Sbjct: 390 LSGIKANQTILTTIMDASGRCKNFGSAL 417



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 71/344 (20%), Positives = 133/344 (38%), Gaps = 20/344 (5%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           S++ ++ + GR      AE +  +MQS G +PS+ TY   ++  V     +   EV + +
Sbjct: 119 SYTALMESYGRGGKCNNAEAIFRRMQSSGPEPSAITYQIILKTFVEGDKFKEAEEVFETL 178

Query: 355 ---QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKP 411
              +++ LKP       +     KA   + A  +   +     P+    + +        
Sbjct: 179 LDEKKSPLKPDQKMYHMMIYMYKKAGNYEKARKVFSSMVGKGVPQSTVTYNSLMSFETSY 238

Query: 412 ERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           +   KI+ +M R  ++PD+ +Y LL   +G      E  ++F +             M  
Sbjct: 239 KEVSKIYDQMQRSDIQPDVVSYALLIKAYGRARREEEALSVFEE-------------MLD 285

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHR 527
             ++ +H +   LL A    GM+ +    F   +     P   +Y T+L + V A +   
Sbjct: 286 AGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEG 345

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A + FK++K  G  PN  TY  +I   +     +    +   M   G        T ++ 
Sbjct: 346 AEKFFKRIKVDGFEPNIVTYGTLIKGYAKANDVEKMMEVYEKMRLSGIKANQTILTTIMD 405

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
                 +F  AL     +   G+P D    N +L  A  +  ++
Sbjct: 406 ASGRCKNFGSALGWYKEMESCGVPPDQKAKNVLLSLASTQDELE 449


>gi|449436014|ref|XP_004135789.1| PREDICTED: pentatricopeptide repeat-containing protein At1g07740,
           mitochondrial-like [Cucumis sativus]
          Length = 460

 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 82/369 (22%), Positives = 153/369 (41%), Gaps = 22/369 (5%)

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQIS----RCTNPKPFSAFLAACDTMDK 410
            +   K    + ++L  + +++   +  E +L  +     RC N   F A +        
Sbjct: 73  HEKGFKHHYPSYSSLIYKLARSRRFEAVETILGHLRNRNIRC-NETLFVALIQHYGKAHL 131

Query: 411 PERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
            E+ I++F +M        ++++ +L +   + +   +   +F Q        A EMD  
Sbjct: 132 VEKGIELFHQMPSFNCFRTLQSFNVLLNTLVDCDQFSKASEIFQQ--------AYEMDFR 183

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAM 529
            N++ ++ I +K  +K  G E     L     +        TYN+ L  L    E   A+
Sbjct: 184 PNSVSYN-IMIKGWIKKGGWEQAC-NLFDEMLEKGVQPSVVTYNSFLGVLCRKGEMDTAL 241

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
            +FK M   G  PNA TY ++++    I  +K A  L+  M   G   + + Y  L+  L
Sbjct: 242 CLFKNMTEKGHHPNAVTYALLMEGWCFIGKYKEAKKLMFDMEFHGCKLRPVNYGVLMTHL 301

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649
              G+ DE  +LL+ +    +  DV+ YN ++   C++G++     ++ +M      P+ 
Sbjct: 302 GKTGNIDEMESLLNEMKKRRLKPDVVTYNILVNYLCKEGKVGDAYKVLVKMQVGGCDPNA 361

Query: 650 STCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEE------KRSDFEDLILAEDS 703
           +T   +  GY N G  + AM+ L  + M      + T         K  + +D +     
Sbjct: 362 ATYRMMIDGYCNAGDFDGAMKILNAMLMSGHYPHLKTFASLVVGLLKGENNDDYVCFVLE 421

Query: 704 EAESRILQF 712
           E E R L+F
Sbjct: 422 EMEKRQLRF 430


>gi|255542744|ref|XP_002512435.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548396|gb|EEF49887.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 546

 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 103/224 (45%), Gaps = 9/224 (4%)

Query: 467 DMARNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQ 523
           +M R  ++ + ++  +L+  L   G + E   L     +S       T+N +L+   + +
Sbjct: 261 EMNRQGVKPNVVTYNSLINGLCNNGKVNEATALRDQMVNSCLKPNIITHNALLNGFCKNK 320

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
              +A E+F  M   GI PN  TYNI+ID        + A AL  +M+  G  P   TY 
Sbjct: 321 MVKQAGELFDDMPKQGITPNVTTYNILIDAYCKDENMEDAFALYRIMLGKGVCPDVSTYN 380

Query: 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
            LI  L   GD + A NL+  +  + +  D++ YN ++   C KG +     ++++M + 
Sbjct: 381 CLIAGLCRKGDLEAARNLVSEMDTKHLKADLITYNILIDSLCNKGEMKKALRLLDEMCRK 440

Query: 644 KVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTL 687
            ++P   T + +  GY   G   +A      L++R   E+V  L
Sbjct: 441 GLKPSQLTYNTMIDGYCKEGNLRAA------LNLRSQMEKVGRL 478



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 77/357 (21%), Positives = 145/357 (40%), Gaps = 49/357 (13%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A+ ++ +M++ G+ P+  T++  I     D+ +   M+V   M +  +KP   T  +L  
Sbjct: 220 ADAILKEMRADGICPNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSLIN 279

Query: 372 ECSKALELDLAEALLDQ-ISRCTNPKPFS--AFLAACDTMDKPERAIKIFAKM-RQKLRP 427
                 +++ A AL DQ ++ C  P   +  A L         ++A ++F  M +Q + P
Sbjct: 280 GLCNNGKVNEATALRDQMVNSCLKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGITP 339

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL 487
           ++ TY +L      ++A  ++ NM                               L + +
Sbjct: 340 NVTTYNIL------IDAYCKDENMEDAFA--------------------------LYRIM 367

Query: 488 GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATY 547
             +G+  ++              TYN ++  L    +   A  +  +M T  +  +  TY
Sbjct: 368 LGKGVCPDV-------------STYNCLIAGLCRKGDLEAARNLVSEMDTKHLKADLITY 414

Query: 548 NIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSL 607
           NI+ID        K A  L+  M R G  P  +TY  +I      G+   ALNL   +  
Sbjct: 415 NILIDSLCNKGEMKKALRLLDEMCRKGLKPSQLTYNTMIDGYCKEGNLRAALNLRSQMEK 474

Query: 608 EGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGF 664
            G   +V  YN ++K  C+K +++    ++ +M +  + P+  T   V    +  GF
Sbjct: 475 VGRLANVATYNVLIKGFCKKDKLEDANGLLNEMLEKGLIPNRMTYEIVTEEMMEKGF 531



 Score = 71.6 bits (174), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/226 (23%), Positives = 102/226 (45%), Gaps = 6/226 (2%)

Query: 467 DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKT---PLGTPTYNTVLHS---LV 520
           +M R  I+ + IS   ++  L   G + +      D K         TYNT++     + 
Sbjct: 153 EMIRRRIEPTLISFNIVINGLCKVGKLNKAGDIIEDMKVRGVSANVITYNTLIDGYCKMG 212

Query: 521 EAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTM 580
           +  + ++A  I K+M+  GI PN  T+NI+ID     +   +A  + + M R G  P  +
Sbjct: 213 KIGKMYKADAILKEMRADGICPNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVV 272

Query: 581 TYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQM 640
           TY +LI  L + G  +EA  L D +    +  +++ +N +L   C+   +     + + M
Sbjct: 273 TYNSLINGLCNNGKVNEATALRDQMVNSCLKPNIITHNALLNGFCKNKMVKQAGELFDDM 332

Query: 641 HQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
            +  + P+ +T + +   Y        A    +++  + +C +VST
Sbjct: 333 PKQGITPNVTTYNILIDAYCKDENMEDAFALYRIMLGKGVCPDVST 378



 Score = 49.3 bits (116), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 82/192 (42%), Gaps = 10/192 (5%)

Query: 481 KNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGI 540
           KNL   LG E   R       D    L   + N ++  LV+  E      ++K+M    I
Sbjct: 105 KNLRTRLGFEAFKRA-----SDYGLKLSVTSCNPLMSGLVKVGEIGDMEFVYKEMIRRRI 159

Query: 541 PPNAATYNIMID-CCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFD--- 596
            P   ++NI+I+  C + +  K+   +  M VR G     +TY  LI      G      
Sbjct: 160 EPTLISFNIVINGLCKVGKLNKAGDIIEDMKVR-GVSANVITYNTLIDGYCKMGKIGKMY 218

Query: 597 EALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVF 656
           +A  +L  +  +GI  + + +N ++   C+   +     +  +M++  V+P+  T + + 
Sbjct: 219 KADAILKEMRADGICPNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSLI 278

Query: 657 SGYVNCGFHNSA 668
           +G  N G  N A
Sbjct: 279 NGLCNNGKVNEA 290


>gi|255570422|ref|XP_002526170.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534547|gb|EEF36246.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 504

 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 78/367 (21%), Positives = 146/367 (39%), Gaps = 20/367 (5%)

Query: 314 QLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL-SVE 372
           ++  +M ++G+ P+   Y   I  +     LR  + +   M    +K    T  +L    
Sbjct: 100 KMFREMINMGICPNVIVYSSLINGLCRVGKLREAVNLFDEMVSQGIKANVITYNSLIHAS 159

Query: 373 CSKALELDLAEALLDQISRCTNPK--PFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDI 429
           C   L  +        +     P    F+  +       K + A KIF  M +Q   P+I
Sbjct: 160 CRFGLWKEATRTFSQMVGEGILPDVVTFTTLIDHLSKKGKVQEAYKIFELMIKQGEAPNI 219

Query: 430 RTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGA 489
            TY  L +             +  Q+D A R+  +   M    I+   IS   L+     
Sbjct: 220 VTYNSLLNGLC----------LHHQMDHAVRLFEV---MVERGIKIDVISYNTLINGYCT 266

Query: 490 EGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAAT 546
            G   E +  F   +    TP   TY  +L +L +      A E+F  M+ CG  P+  T
Sbjct: 267 SGKTEEAMTLFRKMQYEELTPSITTYTILLKALYQNGRIRTAKELFNNMQICGQSPSLDT 326

Query: 547 YNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVS 606
           Y +++D      C + A  +   +    + P    Y+ LI  +     ++ A+ + D + 
Sbjct: 327 YTVLLDGLCKNGCIEEAIDVFRSLKSIKYKPSIRIYSILIGGMFQARRWESAMEIFDEIP 386

Query: 607 LEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHN 666
             G+  +++ YN ++   C++G++   E +  QM ++  + D  + +F+  G++      
Sbjct: 387 TVGLVPNIVTYNIMINGLCKEGKLLEAERLFVQMEESGCEQDEISFNFIIRGFLQENQVQ 446

Query: 667 SAMEALQ 673
            AME L+
Sbjct: 447 KAMEFLK 453



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 83/176 (47%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
            Y+++++ L    +   A+ +F +M + GI  N  TYN +I        +K A+   S M
Sbjct: 116 VYSSLINGLCRVGKLREAVNLFDEMVSQGIKANVITYNSLIHASCRFGLWKEATRTFSQM 175

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           V +G  P  +T+T LI  L   G   EA  + +L+  +G   +++ YN++L   C   ++
Sbjct: 176 VGEGILPDVVTFTTLIDHLSKKGKVQEAYKIFELMIKQGEAPNIVTYNSLLNGLCLHHQM 235

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           D    + E M +  ++ D  + + + +GY   G    AM   + +    L   ++T
Sbjct: 236 DHAVRLFEVMVERGIKIDVISYNTLINGYCTSGKTEEAMTLFRKMQYEELTPSITT 291



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 70/148 (47%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TY  V+ SL +   + + +++F++M   GI PN   Y+ +I+    +   + A  L   M
Sbjct: 81  TYGLVIDSLCKDGLAIKGLKMFREMINMGICPNVIVYSSLINGLCRVGKLREAVNLFDEM 140

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           V  G     +TY +LI     +G + EA      +  EGI  DV+ + T++    +KG++
Sbjct: 141 VSQGIKANVITYNSLIHASCRFGLWKEATRTFSQMVGEGILPDVVTFTTLIDHLSKKGKV 200

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
                I E M +    P+  T + + +G
Sbjct: 201 QEAYKIFELMIKQGEAPNIVTYNSLLNG 228



 Score = 59.7 bits (143), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 73/363 (20%), Positives = 143/363 (39%), Gaps = 20/363 (5%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           +S +I+   R      A  L  +M S G++ +  TY+  I A       +        M 
Sbjct: 117 YSSLINGLCRVGKLREAVNLFDEMVSQGIKANVITYNSLIHASCRFGLWKEATRTFSQMV 176

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQI---SRCTNPKPFSAFLAACDTMDKPE 412
              + P   T  TL    SK  ++  A  + + +       N   +++ L       + +
Sbjct: 177 GEGILPDVVTFTTLIDHLSKKGKVQEAYKIFELMIKQGEAPNIVTYNSLLNGLCLHHQMD 236

Query: 413 RAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471
            A+++F  M ++ ++ D+ +Y  L + +       E   +F +             M   
Sbjct: 237 HAVRLFEVMVERGIKIDVISYNTLINGYCTSGKTEEAMTLFRK-------------MQYE 283

Query: 472 NIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRA 528
            +  S  +   LLKAL   G IR   + F + +    +P   TY  +L  L +      A
Sbjct: 284 ELTPSITTYTILLKALYQNGRIRTAKELFNNMQICGQSPSLDTYTVLLDGLCKNGCIEEA 343

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
           +++F+ +K+    P+   Y+I+I      R ++SA  +   +   G  P  +TY  +I  
Sbjct: 344 IDVFRSLKSIKYKPSIRIYSILIGGMFQARRWESAMEIFDEIPTVGLVPNIVTYNIMING 403

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
           L   G   EA  L   +   G   D + +N I++   ++ ++      +++M +    P+
Sbjct: 404 LCKEGKLLEAERLFVQMEESGCEQDEISFNFIIRGFLQENQVQKAMEFLKRMREKNFSPN 463

Query: 649 PST 651
            S 
Sbjct: 464 DSV 466



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 62/285 (21%), Positives = 107/285 (37%), Gaps = 20/285 (7%)

Query: 398 FSAFLAACDTMDKPERAIKIFAKMRQKLR----PDIRTYELLFSLFGNVNAPYEEGNMFS 453
           F  +    D++ K   AIK     R+ +     P++  Y  L +    V    E  N+F 
Sbjct: 79  FFTYGLVIDSLCKDGLAIKGLKMFREMINMGICPNVIVYSSLINGLCRVGKLREAVNLFD 138

Query: 454 QVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP--- 510
                        +M    I+ + I+  +L+ A    G+ +E  + F         P   
Sbjct: 139 -------------EMVSQGIKANVITYNSLIHASCRFGLWKEATRTFSQMVGEGILPDVV 185

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           T+ T++  L +  +   A +IF+ M   G  PN  TYN +++   +      A  L  +M
Sbjct: 186 TFTTLIDHLSKKGKVQEAYKIFELMIKQGEAPNIVTYNSLLNGLCLHHQMDHAVRLFEVM 245

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           V  G     ++Y  LI      G  +EA+ L   +  E +   +  Y  +LK   + GRI
Sbjct: 246 VERGIKIDVISYNTLINGYCTSGKTEEAMTLFRKMQYEELTPSITTYTILLKALYQNGRI 305

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
              + +   M      P   T   +  G    G    A++  + L
Sbjct: 306 RTAKELFNNMQICGQSPSLDTYTVLLDGLCKNGCIEEAIDVFRSL 350



 Score = 55.1 bits (131), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 97/460 (21%), Positives = 182/460 (39%), Gaps = 74/460 (16%)

Query: 111 RMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAK 170
           RM+ E   G N   Y L++ +LCK G   +   +   +    GI P + VY+S +    +
Sbjct: 69  RMLSEICSG-NFFTYGLVIDSLCKDGLAIKGLKMFREM-INMGICPNVIVYSSLINGLCR 126

Query: 171 LHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIF-S 229
           +  +  A    D M S+ +  N +TY  L+       + S    +W++  + +S  +   
Sbjct: 127 VGKLREAVNLFDEMVSQGIKANVITYNSLI-------HASCRFGLWKEATRTFSQMVGEG 179

Query: 230 LRKFVWSFTRLRD-------LKSAYETLQHMVALAMMGKLYI-NRTSEGRLRSSRLDIPI 281
           +   V +FT L D       ++ AY+  + M+       +   N    G     ++D  +
Sbjct: 180 ILPDVVTFTTLIDHLSKKGKVQEAYKIFELMIKQGEAPNIVTYNSLLNGLCLHHQMDHAV 239

Query: 282 PLNALPV---MKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAI 338
            L  + V   +K+   S++ +I+    +  +  A  L  +MQ   L PS  TY   ++A+
Sbjct: 240 RLFEVMVERGIKIDVISYNTLINGYCTSGKTEEAMTLFRKMQYEELTPSITTYTILLKAL 299

Query: 339 VSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPF 398
             +  +R   E+   MQ                 C ++  LD    LLD +  C N    
Sbjct: 300 YQNGRIRTAKELFNNMQI----------------CGQSPSLDTYTVLLDGL--CKN---- 337

Query: 399 SAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNM--FSQV 455
                 C      E AI +F  ++  K +P IR Y +L    G   A   E  M  F ++
Sbjct: 338 -----GC-----IEEAIDVFRSLKSIKYKPSIRIYSILIG--GMFQARRWESAMEIFDEI 385

Query: 456 DSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFC---DSKTPLGTPTY 512
            +   +  I             ++   ++  L  EG + E  + F    +S       ++
Sbjct: 386 PTVGLVPNI-------------VTYNIMINGLCKEGKLLEAERLFVQMEESGCEQDEISF 432

Query: 513 NTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID 552
           N ++   ++  +  +AME  K+M+     PN +   ++++
Sbjct: 433 NFIIRGFLQENQVQKAMEFLKRMREKNFSPNDSVTLMLVN 472


>gi|224102411|ref|XP_002312667.1| predicted protein [Populus trichocarpa]
 gi|222852487|gb|EEE90034.1| predicted protein [Populus trichocarpa]
          Length = 512

 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 85/380 (22%), Positives = 162/380 (42%), Gaps = 31/380 (8%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           W+F+  ++   R      A ++  +M   G +P   T+   I  +   +     ++    
Sbjct: 115 WAFNIYLNLLFRENREESALEVFGRMVERGREPDVVTFTIIIDGLCKMKKFDAAVQFWLN 174

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEAL--------LDQISRCTNPKPFSAFLAAC 405
           M    ++P +     L+V      ++DLA  L        L ++S        S F  A 
Sbjct: 175 MLDKGIRPDNKACVALAVGLCDGGQVDLAYELIIGVISGGLSEVSTLVYNALISGFCRA- 233

Query: 406 DTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAI 464
               + ++A+ + + M R   +PD+ TY +L +   N     E   +  +++ +    AI
Sbjct: 234 ---GRIDKALAMVSFMSRTGCKPDLVTYNVLLNYCCNEFMFEEAVKLLKKMECS----AI 286

Query: 465 EMDM-ARNNIQHSHISMKNLLKALGAEGMIRELI-QYFCDSKTPLGTPTYNTVLHSLVEA 522
           E D+ + N +  +H    +  KA     M+ +++ + FCD        +YNT++ +    
Sbjct: 287 EPDVYSYNQLLKAHCKANHPDKAYLF--MVTKMVPKGFCD------VVSYNTIIKAFCSI 338

Query: 523 QESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKS--ASALVSMMVRDGFYPQTM 580
             + RA ++F++M   GI P+  T+ I+I   + +R   S  A  L+ +M   G  P  +
Sbjct: 339 SNNRRAYKLFEEMGRKGIAPDVVTFTILIK--AFLREGNSDMAKKLLDLMAGMGLLPDRI 396

Query: 581 TYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQM 640
            YT +I      G  + A ++   +  +GI  DV+ YN ++   C+  R+  +  + EQM
Sbjct: 397 FYTTIIDHHCKSGKVEMAHSIFCDMVEKGITPDVVSYNALINGFCKSLRVGEVMHLYEQM 456

Query: 641 HQNKVQPDPSTCHFVFSGYV 660
            Q    PD  T   +    V
Sbjct: 457 LQRGSFPDEVTYKLIIGALV 476


>gi|414591648|tpg|DAA42219.1| TPA: PPR-814b [Zea mays]
          Length = 827

 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 76/316 (24%), Positives = 134/316 (42%), Gaps = 13/316 (4%)

Query: 359 LKPQDSTIATLSVECSKALELDLAEALLDQISRC---TNPKPFSAFLAACDTMDKPERAI 415
           L P   T A L   C++A   +LA A   Q+ R     N    +  L       + + A+
Sbjct: 120 LSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEAL 179

Query: 416 KIFAKMRQKLR--PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNI 473
            I      +L   PD+ +Y +L     +     +  ++   +     + +  + +A N +
Sbjct: 180 DILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNV-VAYNTV 238

Query: 474 QHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFK 533
                   ++ KA     + +E++Q       P    TYN+V+H+L +A+   +A    +
Sbjct: 239 IDGFFKEGDVNKACD---LFKEMVQ----RGIPPDLVTYNSVVHALCKARAMDKAEAFLR 291

Query: 534 QMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYG 593
           QM    + PN  TYN +I   S    +K A  +   M R    P  +T + L+  L  YG
Sbjct: 292 QMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYG 351

Query: 594 DFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCH 653
              EA ++ D ++++G   DV  YN +L     KG +  +  + + M  + + PD  T +
Sbjct: 352 KIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFN 411

Query: 654 FVFSGYVNCGFHNSAM 669
            +   Y NCG  + AM
Sbjct: 412 VLIKAYANCGMLDKAM 427



 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 79/392 (20%), Positives = 150/392 (38%), Gaps = 24/392 (6%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLG--LQPSSHTYDGFIRAIVSDRGLRNGMEVL 351
           +S+S ++ +      SG A+ L+  M   G    P+   Y+  I     +  +    ++ 
Sbjct: 196 FSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLF 255

Query: 352 KIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTM 408
           K M Q  + P   T  ++     KA  +D AEA L Q+       N   ++  +    + 
Sbjct: 256 KEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSST 315

Query: 409 DKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMD 467
            + + A+++F +MR+  + PD+ T  +L           E  ++F               
Sbjct: 316 GQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDT------------- 362

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRELIQYF----CDSKTPLGTPTYNTVLHSLVEAQ 523
           MA         S   +L     +G + ++   F     D   P    T+N ++ +     
Sbjct: 363 MAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAP-DFYTFNVLIKAYANCG 421

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
              +AM IF +M+  G+ P+  TY  +I     I     A    + M+  G  P    Y 
Sbjct: 422 MLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYN 481

Query: 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
            LI+    +G   +A  L+  +   G+  D++ +++I+   C+ GR+   + I +     
Sbjct: 482 CLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNV 541

Query: 644 KVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
            + PD      +  GY   G    A+     +
Sbjct: 542 GLHPDAVVYSMLMDGYCLVGKMEKALRVFDAM 573



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 84/407 (20%), Positives = 163/407 (40%), Gaps = 57/407 (14%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ V+HA  + +    AE  + QM +  + P++ TY+  I    S    +  + V K M
Sbjct: 269 TYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEM 328

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQIS-RCTNPKPFSAFL----------- 402
           +++++ P   T++ L     K  ++  A  + D ++ +  NP  FS  +           
Sbjct: 329 RRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCL 388

Query: 403 -----------------------------AACDTMDKPERAIKIFAKMR-QKLRPDIRTY 432
                                        A C  +DK   A+ IF +MR   ++PD+ TY
Sbjct: 389 VDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDK---AMIIFNEMRDHGVKPDVVTY 445

Query: 433 ELLFSLFGNVNAPYEEGNMFSQ-VDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEG 491
             + +    +    +    F+Q +D     +      A N +     +  +LLKA     
Sbjct: 446 RTVIAALCRIGKMDDAMEKFNQMIDQGVAPD----KYAYNCLIQGFCTHGSLLKA----- 496

Query: 492 MIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI 551
             +ELI    ++   L    +++++++L +      A  IF      G+ P+A  Y++++
Sbjct: 497 --KELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLM 554

Query: 552 DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIP 611
           D   ++   + A  +   MV  G  P  + Y  L+      G  DE L+L   +   GI 
Sbjct: 555 DGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIK 614

Query: 612 HDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
              +LY+ I+    + GR    +    +M ++ +  D  T + V  G
Sbjct: 615 PSTILYSIIIDGLFQAGRTVPAKMKFHEMTESGIAMDICTYNIVLRG 661



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 62/268 (23%), Positives = 118/268 (44%), Gaps = 20/268 (7%)

Query: 413 RAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471
           +A  +F +M Q+ + PD+ TY  +        A          +D A+   A    M   
Sbjct: 250 KACDLFKEMVQRGIPPDLVTYNSVVHALCKARA----------MDKAE---AFLRQMVNK 296

Query: 472 NIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRA 528
            +  ++ +  NL+    + G  +E ++ F + +     P   T + ++ SL +  +   A
Sbjct: 297 RVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEA 356

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
            ++F  M   G  P+  +YNIM++  +   C    + L  +M+ DG  P   T+  LIK 
Sbjct: 357 RDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKA 416

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
             + G  D+A+ + + +   G+  DV+ Y T++   C  G++D       QM    V PD
Sbjct: 417 YANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPD 476

Query: 649 PSTCHFVFSGYVNCGFHNSAMEALQVLS 676
               + +  G+     H S ++A +++S
Sbjct: 477 KYAYNCLIQGFCT---HGSLLKAKELIS 501



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 83/180 (46%), Gaps = 7/180 (3%)

Query: 513 NTVLHSLVEAQESHRAMEIF-KQMKTCGIPPNAATYNIMIDCCSIIRCFKSASA--LVSM 569
           N +L    EA+ +  A++I   +    G  P+  +Y+I++   S+    KS  A  L+ M
Sbjct: 163 NHLLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLK--SLCDQGKSGQADDLLRM 220

Query: 570 MVRDGFY--PQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEK 627
           M   G    P  + Y  +I      GD ++A +L   +   GIP D++ YN+++   C+ 
Sbjct: 221 MAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKA 280

Query: 628 GRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTL 687
             +D  E  + QM   +V P+  T + +  GY + G    A+   + +    +  +V TL
Sbjct: 281 RAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTL 340



 Score = 57.0 bits (136), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 120/572 (20%), Positives = 219/572 (38%), Gaps = 63/572 (11%)

Query: 108 ETWRMMEEKE--IGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFL 165
           +  RMM E       N   Y  ++    K G + +A +L   + +R GI P L  YNS +
Sbjct: 216 DLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQR-GIPPDLVTYNSVV 274

Query: 166 GACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELL----KLAVWQKNLSAVHEIWEDYIK 221
            A  K  +M  A   L  M ++ V  N  TY  L+        W++ +    E+    I 
Sbjct: 275 HALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSIL 334

Query: 222 HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGK---------LYINRTSEGRL 272
              +++  L   +  + ++++ +  ++T      +AM G+         +     ++G L
Sbjct: 335 PDVVTLSMLMGSLCKYGKIKEARDVFDT------MAMKGQNPDVFSYNIMLNGYATKGCL 388

Query: 273 --RSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLML---QMQSLGLQPS 327
              +   D+ +     P      ++F+ +I A     N G+ ++ M+   +M+  G++P 
Sbjct: 389 VDMTDLFDLMLGDGIAPDF----YTFNVLIKA---YANCGMLDKAMIIFNEMRDHGVKPD 441

Query: 328 SHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLD 387
             TY   I A+     + + ME    M    + P       L         L  A+ L+ 
Sbjct: 442 VVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELIS 501

Query: 388 QISRCTNPKPFSAFLAACDTMDKPER---AIKIF-AKMRQKLRPDIRTYELLFSLFGNVN 443
           +I           F +  + + K  R   A  IF   +   L PD   Y +L   +  V 
Sbjct: 502 EIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVG 561

Query: 444 APYEEGNMFSQVDSAK----------------RINAIE------MDMARNNIQHSHISMK 481
              +   +F  + SA                 +I  I+       +M +  I+ S I   
Sbjct: 562 KMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYS 621

Query: 482 NLLKALGAEGMIRELIQYF---CDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTC 538
            ++  L   G        F    +S   +   TYN VL  L + +    A+ +FK+++  
Sbjct: 622 IIIDGLFQAGRTVPAKMKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAM 681

Query: 539 GIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEA 598
            +  N  T N MID     R  + A  L + + R    P  +TY+ +I  L+  G  +EA
Sbjct: 682 NVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVPNVVTYSIMITNLIKEGLVEEA 741

Query: 599 LNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
            ++   +   G   +  L N ++++  +K  I
Sbjct: 742 EDMFSSMQNAGCEPNSRLLNHVVRELLKKNEI 773



 Score = 48.5 bits (114), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 72/342 (21%), Positives = 119/342 (34%), Gaps = 81/342 (23%)

Query: 382 AEALLDQISRCTNP---KPFSAFLAA-------CDTMDKPERAIKIF------AKMRQKL 425
           A  LLD++ R   P   +  + FLAA             P  A+ +F      A+  + L
Sbjct: 61  AHDLLDELQRRGTPVLERDLNGFLAALARAPSSAACRSGPALAVALFNRAASRAQGPRVL 120

Query: 426 RPDIRTYELLFSLFGNVNAPYEEGNMFSQV-DSAKRINAI-------------EMDMARN 471
            P   TY +L       + P      F Q+  +  R+N I               D A +
Sbjct: 121 SPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEALD 180

Query: 472 NIQHSH---------ISMKNLLKAL---GAEGMIRELIQYFCDSKTPLGTP---TYNTVL 516
            + H            S   LLK+L   G  G   +L++   +    + +P    YNTV+
Sbjct: 181 ILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGA-VCSPNVVAYNTVI 239

Query: 517 HSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFY 576
               +  + ++A ++FK+M   GIPP+  TYN ++      R    A A +  MV     
Sbjct: 240 DGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVL 299

Query: 577 PQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFI 636
           P   TY  LI      G + EA+                                    +
Sbjct: 300 PNNWTYNNLIYGYSSTGQWKEAVR-----------------------------------V 324

Query: 637 IEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678
            ++M ++ + PD  T   +       G    A +    ++M+
Sbjct: 325 FKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMK 366


>gi|449513353|ref|XP_004164304.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g06920-like [Cucumis sativus]
          Length = 904

 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 90/418 (21%), Positives = 171/418 (40%), Gaps = 56/418 (13%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++++I A   +++S     L  QMQ LG   + H +   IR    +  +   + +L  M
Sbjct: 202 AYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVFAREGRVDAALSLLDEM 261

Query: 355 QQNNLKPQDSTIATLSVEC-SKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDK 410
           + N+L+P D  +  + ++C  KA ++D+A     ++       +   +++ +      D+
Sbjct: 262 KSNSLEP-DVVLYNVCIDCFGKAGKVDMAWKXFHEMKANGLVLDDVTYTSMIGVLCKADR 320

Query: 411 PERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
              A+++F  M Q K  P    Y  +   +G +   +E+   +S ++  +R   I     
Sbjct: 321 LNEAVELFEHMDQNKQVPCAYAYNTMIMGYG-MAGKFEDA--YSLLERQRRKGCIP---- 373

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPL--GTPTYNTVLHSLVEAQESHR 527
                 S +S   +L  LG +G + E ++ F + K        TYN ++  L +A +   
Sbjct: 374 ------SVVSYNCILSCLGRKGQVDEALKKFEEMKKDAIPNLSTYNIMIDMLCKAGKLET 427

Query: 528 AMEIFKQMKTCGIPPNAATYNIMID----------CCSIIR------CFKSASALVSMMV 571
           A+ +   MK  G+ PN  T NIM+D           CSI        C   A    S++ 
Sbjct: 428 ALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIE 487

Query: 572 RDGFY-------------------PQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPH 612
             G +                   P  + YT+LI+     G  ++   + + +   G   
Sbjct: 488 GLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSP 547

Query: 613 DVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAME 670
           D+LL NT +    + G I+    + +++      PD  +   +  G V  GF + A E
Sbjct: 548 DLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYE 605



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 106/535 (19%), Positives = 204/535 (38%), Gaps = 74/535 (13%)

Query: 195 TYTELLKLAVWQKNLSAVHEIWEDY-IKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHM 253
            Y  LL +    +  + + +I E+  I  +  S  +  + V SF + R L+ A+  +Q M
Sbjct: 132 AYNSLLMVMARTRKFNCLEQILEEMSIAGFGPSNNTCIEIVLSFIKSRKLREAFTFIQTM 191

Query: 254 VALA----------MMGKLYINRTSEGRL--------------------------RSSRL 277
             L           ++G L  +R S+  L                          R  R+
Sbjct: 192 RKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVFAREGRV 251

Query: 278 DIPIPL------NALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTY 331
           D  + L      N+L    VL   ++  I   G+     +A +   +M++ GL     TY
Sbjct: 252 DAALSLLDEMKSNSLEPDVVL---YNVCIDCFGKAGKVDMAWKXFHEMKANGLVLDDVTY 308

Query: 332 DGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR 391
              I  +     L   +E+ + M QN   P      T+ +    A + + A +LL++  R
Sbjct: 309 TSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLERQRR 368

Query: 392 ---CTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGN------- 441
                +   ++  L+      + + A+K F +M++   P++ TY ++  +          
Sbjct: 369 KGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDAIPNLSTYNIMIDMLCKAGKLETA 428

Query: 442 --VNAPYEEGNMFSQVDS----------AKRIN---AIEMDMARNNIQHSHISMKNLLKA 486
             V    ++  +F  V +          A+R++   +I   +     +   ++  +L++ 
Sbjct: 429 LVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEG 488

Query: 487 LGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPN 543
           LG  G + E   L +   D+        Y +++ +  +        +I+ +M   G  P+
Sbjct: 489 LGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPD 548

Query: 544 AATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLD 603
               N  +DC       +   AL   +   GF P   +YT LI  L+  G   EA  L  
Sbjct: 549 LLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFY 608

Query: 604 LVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
            +  +G   D   YNT++   C+ G+++    ++E+M     +P   T   V  G
Sbjct: 609 TMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDG 663



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 82/405 (20%), Positives = 159/405 (39%), Gaps = 40/405 (9%)

Query: 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
           R +++ ++    RT+     EQ++ +M   G  PS++T    + + +  R LR     ++
Sbjct: 130 REAYNSLLMVMARTRKFNCLEQILEEMSIAGFGPSNNTCIEIVLSFIKSRKLREAFTFIQ 189

Query: 353 IMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMD 409
            M++   +P  S    L    S + + D    L  Q+       N   F+  +       
Sbjct: 190 TMRKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVFAREG 249

Query: 410 KPERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDS----------- 457
           + + A+ +  +M+   L PD+  Y +    FG           F ++ +           
Sbjct: 250 RVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKXFHEMKANGLVLDDVTYT 309

Query: 458 --------AKRIN-AIEM--DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTP 506
                   A R+N A+E+   M +N       +   ++   G  G   +        +  
Sbjct: 310 SMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLERQRRK 369

Query: 507 LGTPT---YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSA 563
              P+   YN +L  L    +   A++ F++MK   IP N +TYNIMID    + C K+ 
Sbjct: 370 GCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDAIP-NLSTYNIMID----MLC-KAG 423

Query: 564 SALVSMMVRD-----GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYN 618
               +++VRD     G +P  +T   ++  L      D+A ++ + +  +    D + Y 
Sbjct: 424 KLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYC 483

Query: 619 TILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
           ++++     GR+D    + EQM      P+      +   +  CG
Sbjct: 484 SLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCG 528



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 82/358 (22%), Positives = 139/358 (38%), Gaps = 31/358 (8%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           ++  +I   GR      A +L  QM      P++  Y   IR         +G ++   M
Sbjct: 481 TYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEM 540

Query: 355 QQNNLKPQDSTIATLSVECS-KALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDK 410
            +    P D  +    ++C  KA E++   AL  +I       + + ++  +        
Sbjct: 541 LRLGCSP-DLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGF 599

Query: 411 PERAIKIFAKMR-QKLRPDIRTYELLFSLF---GNVNAPYE----------------EGN 450
              A ++F  M+ Q    D R Y  +   F   G VN  Y+                 G+
Sbjct: 600 AHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGS 659

Query: 451 MFSQVDSAKRINAIEM---DMARNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSK 504
           +   +    R++   M   +     I+ + +   +L+   G  G I E   +++      
Sbjct: 660 VIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKG 719

Query: 505 TPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSAS 564
                 T+N +L +LV+A+E   A+  F+ MK     PN  TY+I+I     IR F  A 
Sbjct: 720 LTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAF 779

Query: 565 ALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILK 622
                M + GF P   TYT +I  L   G+  EA  L +    +G   D  +YN I++
Sbjct: 780 VFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIE 837



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 69/141 (48%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           +Y  ++H LV+A  +H A E+F  MK  G   +   YN +ID          A  L+  M
Sbjct: 586 SYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEM 645

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
              G  P  +TY ++I  L      DEA  L +    +GI  +V++Y++++    + GRI
Sbjct: 646 KTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRI 705

Query: 631 DVIEFIIEQMHQNKVQPDPST 651
           D    I+E++ Q  + P+  T
Sbjct: 706 DEAYLIMEELMQKGLTPNVYT 726



 Score = 52.8 bits (125), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 69/347 (19%), Positives = 137/347 (39%), Gaps = 20/347 (5%)

Query: 319 MQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALE 378
           M+  GL P+  T +  +  +   + L +   + + +     +P   T  +L     +   
Sbjct: 435 MKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGR 494

Query: 379 LDLAEALLDQI---SRCTNPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYEL 434
           +D A  L +Q+   ++  N   +++ +       + E   KI+ +M R    PD+    L
Sbjct: 495 VDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDL----L 550

Query: 435 LFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIR 494
           L + +  ++  ++ G +       ++  A+  ++          S   L+  L   G   
Sbjct: 551 LLNTY--MDCVFKAGEI-------EKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAH 601

Query: 495 ELIQYFCDSKTP---LGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI 551
           E  + F   K     L T  YNTV+    ++ + ++A ++ ++MKT G  P   TY  +I
Sbjct: 602 EAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVI 661

Query: 552 DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIP 611
           D  + I     A  L       G     + Y++LI      G  DEA  +++ +  +G+ 
Sbjct: 662 DGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLT 721

Query: 612 HDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
            +V  +N +L    +   I       + M   K  P+  T   +  G
Sbjct: 722 PNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHG 768



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 95/514 (18%), Positives = 190/514 (36%), Gaps = 55/514 (10%)

Query: 106 VMETWRMMEE--KEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNS 163
           V E  +  EE  K+   N   Y +M+  LCK G LE A  ++    +  G++P +   N 
Sbjct: 391 VDEALKKFEEMKKDAIPNLSTYNIMIDMLCKAGKLETAL-VVRDAMKDAGLFPNVITVNI 449

Query: 164 FLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHY 223
            +    K   +  A    + +D +    + VTY  L++       +   ++++E  +   
Sbjct: 450 MVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDAN 509

Query: 224 SL-SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIP 282
            + +       + +F +    +  ++    M+ L     L +  T               
Sbjct: 510 QIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNT--------------- 554

Query: 283 LNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDR 342
                        + D +   G  +       L  ++++LG  P + +Y   I  +V   
Sbjct: 555 -------------YMDCVFKAGEIEK---GRALFQEIKNLGFIPDARSYTILIHGLVKAG 598

Query: 343 GLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFL 402
                 E+   M++           T+     K+ +++ A  LL+++    +      + 
Sbjct: 599 FAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYG 658

Query: 403 AACDTMDKPER---AIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSA 458
           +  D + K +R   A  +F + + K +  ++  Y  L   FG V           ++D A
Sbjct: 659 SVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKV----------GRIDEA 708

Query: 459 KRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTV 515
             I     ++ +  +  +  +   LL AL     I E +  F   K    TP   TY+ +
Sbjct: 709 YLIME---ELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPNYITYSIL 765

Query: 516 LHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGF 575
           +H L + ++ ++A   +++M+  G  PN  TY  MI   +       A  L       G 
Sbjct: 766 IHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFKEKGG 825

Query: 576 YPQTMTYTALIKILLDYGDFDEALNLLDLVSLEG 609
              +  Y A+I+ L +     +A  L +   L+G
Sbjct: 826 VADSAIYNAIIEGLSNANRASDAYRLFEEARLKG 859



 Score = 43.5 bits (101), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 34/163 (20%), Positives = 65/163 (39%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
            Y  ++ +L  +++S   + +F+QM+  G   N   +  +I   +      +A +L+  M
Sbjct: 202 AYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVFAREGRVDAALSLLDEM 261

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
             +   P  + Y   I      G  D A      +   G+  D + Y +++   C+  R+
Sbjct: 262 KSNSLEPDVVLYNVCIDCFGKAGKVDMAWKXFHEMKANGLVLDDVTYTSMIGVLCKADRL 321

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           +    + E M QNK  P     + +  GY   G    A   L+
Sbjct: 322 NEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLE 364


>gi|15238925|ref|NP_199046.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75154282|sp|Q8L844.1|PP413_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g42310, mitochondrial; Flags: Precursor
 gi|21539517|gb|AAM53311.1| maize crp1 protein-like [Arabidopsis thaliana]
 gi|332007411|gb|AED94794.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 709

 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 106/544 (19%), Positives = 212/544 (38%), Gaps = 74/544 (13%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y +++ AL +   L EA    + L ++  + P+   YN+ +GACA+ + +  A   +  M
Sbjct: 170 YSILIHALGRSEKLYEA----FLLSQKQTLTPL--TYNALIGACARNNDIEKALNLIAKM 223

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAV------HEIWEDYIKHYSLSIFSLRKFVWSFT 238
                  + V Y+ +++       + +V       EI  D ++   L +  +   +  F 
Sbjct: 224 RQDGYQSDFVNYSLVIQSLTRSNKIDSVMLLRLYKEIERDKLE---LDVQLVNDIIMGFA 280

Query: 239 RLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSD 298
           +  D   A + L    A  +  K                                 +   
Sbjct: 281 KSGDPSKALQLLGMAQATGLSAKTA-------------------------------TLVS 309

Query: 299 VIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNN 358
           +I A   +  +  AE L  +++  G++P +  Y+  ++  V    L++   ++  M++  
Sbjct: 310 IISALADSGRTLEAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRG 369

Query: 359 LKPQDSTIATLSVECSKALELDLAEALLDQISRC---TNPKPFSAFLAACDTMDKPERAI 415
           + P + T + L      A   + A  +L ++       N   FS  LA      + ++  
Sbjct: 370 VSPDEHTYSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTF 429

Query: 416 KIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNI- 473
           ++  +M+   ++PD + Y ++   FG  N        F ++ S      IE D    N  
Sbjct: 430 QVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLS----EGIEPDRVTWNTL 485

Query: 474 -----QHS-HISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHR 527
                +H  HI  + + +A+   G +            P  T TYN +++S  + +    
Sbjct: 486 IDCHCKHGRHIVAEEMFEAMERRGCL------------PCAT-TYNIMINSYGDQERWDD 532

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
              +  +MK+ GI PN  T+  ++D       F  A   +  M   G  P +  Y ALI 
Sbjct: 533 MKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYNALIN 592

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
                G  ++A+N   +++ +G+   +L  N+++    E  R      +++ M +N V+P
Sbjct: 593 AYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLINAFGEDRRDAEAFAVLQYMKENGVKP 652

Query: 648 DPST 651
           D  T
Sbjct: 653 DVVT 656



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 82/340 (24%), Positives = 148/340 (43%), Gaps = 26/340 (7%)

Query: 347 GMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFL 402
            +++L + Q   L  + +T+ ++    + +     AEAL +++ R +  KP    ++A L
Sbjct: 288 ALQLLGMAQATGLSAKTATLVSIISALADSGRTLEAEALFEEL-RQSGIKPRTRAYNALL 346

Query: 403 AACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI 461
                    + A  + ++M ++ + PD  TY LL   +  VNA   E         + RI
Sbjct: 347 KGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAY--VNAGRWE---------SARI 395

Query: 462 NAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPT---YNTVLHS 518
              EM+    ++Q +      LL      G  ++  Q   + K+    P    YN V+ +
Sbjct: 396 VLKEMEAG--DVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDT 453

Query: 519 LVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC-CSIIRCFKSASALVSMMVRDGFYP 577
             +      AM  F +M + GI P+  T+N +IDC C   R    A  +   M R G  P
Sbjct: 454 FGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHI-VAEEMFEAMERRGCLP 512

Query: 578 QTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI-DVIEFI 636
              TY  +I    D   +D+   LL  +  +GI  +V+ + T++    + GR  D IE  
Sbjct: 513 CATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIE-C 571

Query: 637 IEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
           +E+M    ++P  +  + + + Y   G    A+ A +V++
Sbjct: 572 LEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMT 611



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 77/389 (19%), Positives = 161/389 (41%), Gaps = 24/389 (6%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGM--EVLK 352
           +++ +I AC R  +   A  L+ +M+  G Q     Y   I+++     + + M   + K
Sbjct: 199 TYNALIGACARNNDIEKALNLIAKMRQDGYQSDFVNYSLVIQSLTRSNKIDSVMLLRLYK 258

Query: 353 IMQQNNLKPQDSTIATL------SVECSKALEL-DLAEALLDQISRCTNPKPFSAFLAAC 405
            ++++ L+     +  +      S + SKAL+L  +A+A        T     SA   + 
Sbjct: 259 EIERDKLELDVQLVNDIIMGFAKSGDPSKALQLLGMAQATGLSAKTATLVSIISALADSG 318

Query: 406 DTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAI 464
            T++    A  +F ++RQ  ++P  R Y  L   +       +  +M S+++  KR   +
Sbjct: 319 RTLE----AEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEME--KR--GV 370

Query: 465 EMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQE 524
             D      +H++  + +     G     R +++          +  ++ +L    +  E
Sbjct: 371 SPD------EHTYSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGE 424

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
             +  ++ K+MK+ G+ P+   YN++ID      C   A      M+ +G  P  +T+  
Sbjct: 425 WQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNT 484

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
           LI     +G    A  + + +   G       YN ++    ++ R D ++ ++ +M    
Sbjct: 485 LIDCHCKHGRHIVAEEMFEAMERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQG 544

Query: 645 VQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           + P+  T   +   Y   G  N A+E L+
Sbjct: 545 ILPNVVTHTTLVDVYGKSGRFNDAIECLE 573



 Score = 63.2 bits (152), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 68/330 (20%), Positives = 125/330 (37%), Gaps = 36/330 (10%)

Query: 381 LAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLF 439
           L EA L    +   P  ++A + AC   +  E+A+ + AKMRQ   + D   Y L+    
Sbjct: 183 LYEAFLLSQKQTLTPLTYNALIGACARNNDIEKALNLIAKMRQDGYQSDFVNYSLVIQSL 242

Query: 440 GNVNAP--------YEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALG--- 488
              N          Y+E          + +N I M  A++      + +  + +A G   
Sbjct: 243 TRSNKIDSVMLLRLYKEIERDKLELDVQLVNDIIMGFAKSGDPSKALQLLGMAQATGLSA 302

Query: 489 --------------------AEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRA 528
                               AE +  EL Q    S     T  YN +L   V+      A
Sbjct: 303 KTATLVSIISALADSGRTLEAEALFEELRQ----SGIKPRTRAYNALLKGYVKTGPLKDA 358

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
             +  +M+  G+ P+  TY+++ID       ++SA  ++  M      P +  ++ L+  
Sbjct: 359 ESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAG 418

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
             D G++ +   +L  +   G+  D   YN ++    +   +D      ++M    ++PD
Sbjct: 419 FRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPD 478

Query: 649 PSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678
             T + +   +   G H  A E  + +  R
Sbjct: 479 RVTWNTLIDCHCKHGRHIVAEEMFEAMERR 508


>gi|78708657|gb|ABB47632.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1080

 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 84/403 (20%), Positives = 176/403 (43%), Gaps = 26/403 (6%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           +S++  I   G+ +    A +++ +M++ G +P   T+   I+ +     + +  +V   
Sbjct: 231 YSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWK 290

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPER 413
           M++++ KP   T  TL  +     +      + + +          A+ A  D + +  R
Sbjct: 291 MKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGR 350

Query: 414 ---AIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVD-SAKRINAIEMDM 468
              A+++F +M+QK + P+  +Y  L S F   +   +   +F  +D    + N     +
Sbjct: 351 VFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHGPKPNGYTHVL 410

Query: 469 ARNNIQHSHISMKNLLKA--LGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESH 526
             N    S  S+K + +   + ++G++ +++               N VL  L ++    
Sbjct: 411 FINYYGKSGESIKAIQRYELMKSKGIVPDVV-------------AGNAVLFGLAKSGRLG 457

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
            A  +F ++K  G+ P+  TY +MI CCS    F  A  +   M+ +   P  +   +LI
Sbjct: 458 MAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLI 517

Query: 587 KILLDYGDFDEALNL---LDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
             L   G  DEA  +   L  ++LE  P D   YNT+L     +G++  +  ++E+M+ +
Sbjct: 518 DTLYKAGRGDEAWRIFYQLKEMNLE--PTDG-TYNTLLAGLGREGKVKEVMHLLEEMYHS 574

Query: 644 KVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
              P+  T + +       G  N A++ L  ++ +    ++S+
Sbjct: 575 NYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSS 617



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 91/443 (20%), Positives = 178/443 (40%), Gaps = 62/443 (13%)

Query: 220 IKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGK---LYINRTSEGRLRSSR 276
           + H + S   + + +    R+ D+   ++ +Q  +  A +G    ++     EG LRS+ 
Sbjct: 86  VAHTTASCNYMLELMRGHGRVGDMAEVFDVMQRQIVKANVGTFAAIFGGLGVEGGLRSA- 144

Query: 277 LDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIR 336
              P+   ALPVMK                                G+  +++TY+G + 
Sbjct: 145 ---PV---ALPVMK------------------------------EAGIVLNAYTYNGLVY 168

Query: 337 AIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI-SRCTNP 395
            +V     R  +EV ++M  + + P   T + L V   K  +++    LL ++ +    P
Sbjct: 169 FLVKSGFDREALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKP 228

Query: 396 KPFSAFLAACDTMDKPER---AIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNM 451
             +S +      + + +R   A +I AKM  +  +PD+ T+ +L  +  +     +  ++
Sbjct: 229 NVYS-YTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDV 287

Query: 452 FSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPL---G 508
           F +             M +++ +   ++   LL   G  G  + +++ +   K       
Sbjct: 288 FWK-------------MKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDN 334

Query: 509 TPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVS 568
              Y  V+ +L +      A+E+F +MK  GI P   +YN +I        F  A  L  
Sbjct: 335 VVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFK 394

Query: 569 MMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
            M   G  P   T+   I      G+  +A+   +L+  +GI  DV+  N +L    + G
Sbjct: 395 HMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSG 454

Query: 629 RIDVIEFIIEQMHQNKVQPDPST 651
           R+ + + +  ++    V PD  T
Sbjct: 455 RLGMAKRVFHELKAMGVSPDTIT 477



 Score = 74.3 bits (181), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 97/206 (47%), Gaps = 3/206 (1%)

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIREL---IQYFCDSKTPLGTPTYNTVLHSLVEAQE 524
           M R  ++ +  +   +   LG EG +R     +    ++   L   TYN +++ LV++  
Sbjct: 116 MQRQIVKANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLVYFLVKSGF 175

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
              A+E+++ M   G+ P+  TY++++      R  ++   L+  M   G  P   +YT 
Sbjct: 176 DREALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTI 235

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
            I++L     FDEA  +L  +  EG   DV+ +  +++  C+ GRI   + +  +M ++ 
Sbjct: 236 CIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSD 295

Query: 645 VQPDPSTCHFVFSGYVNCGFHNSAME 670
            +PD  T   +   + + G   S ME
Sbjct: 296 QKPDRVTYITLLDKFGDNGDSQSVME 321



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 140/705 (19%), Positives = 263/705 (37%), Gaps = 90/705 (12%)

Query: 55  TQMQIVDALCRGER-SRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMM 113
           T   ++  LC   R S A  +   +  +        +  +L+    + D   VME W  M
Sbjct: 267 THTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAM 326

Query: 114 EEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHS 173
           +      N   Y  ++ ALC+ G + EA  +   + ++ GI P    YNS +    K   
Sbjct: 327 KADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQK-GIVPEQYSYNSLISGFLKADR 385

Query: 174 MVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWE-DYIKHYSL--SIFSL 230
              A      MD  + G     YT +L +  + K+  ++  I   + +K   +   + + 
Sbjct: 386 FGDALELFKHMD--IHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAG 443

Query: 231 RKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRL--RSSRLDIPIPL----- 283
              ++   +   L  A      + A+ +     I  T   +   ++S+ D  + +     
Sbjct: 444 NAVLFGLAKSGRLGMAKRVFHELKAMGVSPDT-ITYTMMIKCCSKASKFDEAVKIFYDMI 502

Query: 284 --NALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSD 341
             N +P +  +  S  D ++  GR      A ++  Q++ + L+P+  TY+  +  +  +
Sbjct: 503 ENNCVPDVLAVN-SLIDTLYKAGRGDE---AWRIFYQLKEMNLEPTDGTYNTLLAGLGRE 558

Query: 342 RGLRNGMEVLKIMQQNNLKPQDSTIAT-LSVECSKALELDLAEALLDQISRCTNPKPFSA 400
             ++  M +L+ M  +N  P   T  T L   C      D  + L    ++   P   S+
Sbjct: 559 GKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPD-LSS 617

Query: 401 FLAACDTMDKPER---AIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMF----- 452
           +      + K ER   A  IF +M++ L PD  T   +   F  +    E  ++      
Sbjct: 618 YNTVIYGLVKEERYNEAFSIFCQMKKVLIPDYATLCTILPSFVKIGLMKEALHIIKDYFL 677

Query: 453 ---SQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGA---EGMIRELIQYFCDSK-- 504
              S+ D +   + +E  + +  I+ S I    ++ + G    +  +  LI++ C  K  
Sbjct: 678 QPGSKTDRSSCHSLMEGILKKAGIEKS-IEFAEIIASSGITLDDFFLCPLIKHLCKQKKA 736

Query: 505 --------------TPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIM 550
                           L T  YN+++  LV+      A  +F +MK  G  P+  TYN++
Sbjct: 737 LEAHELVKKFKSFGVSLKTGLYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLL 796

Query: 551 IDCC-----------------------------SII------RCFKSASALVSMMVRDGF 575
           +D                               +II      R  + A  L   ++  GF
Sbjct: 797 LDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGF 856

Query: 576 YPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEF 635
            P   TY  L+  LL  G  ++A NL + +   G   +  +YN +L      G  + +  
Sbjct: 857 SPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCH 916

Query: 636 IIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEAL-QVLSMRM 679
           + + M    + PD  +   +       G  N  +    Q+L M +
Sbjct: 917 LFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGL 961



 Score = 62.8 bits (151), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 67/304 (22%), Positives = 127/304 (41%), Gaps = 30/304 (9%)

Query: 294  WSFSDVIHACGRTQNSGLAEQLMLQ--MQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVL 351
            ++++ ++ A G++    + E L +Q  M   G + +  TY+  I  +V  R L   +++ 
Sbjct: 791  FTYNLLLDAMGKSMR--IEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLY 848

Query: 352  KIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI------SRCTNPKPFSAFLAAC 405
              +      P   T   L     KA  ++ AE L +++      + CT    ++  L   
Sbjct: 849  YNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCT---IYNILLNGH 905

Query: 406  DTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAI 464
                  E+   +F  M  Q + PDI++Y ++           +    F Q+        +
Sbjct: 906  RIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQL--------L 957

Query: 465  EMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVE 521
            EM      ++   I+   L+  LG    + E +  F + +     P   TYN+++  L +
Sbjct: 958  EM-----GLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGK 1012

Query: 522  AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMT 581
            A ++  A ++++++ T G  PN  TYN +I   S+     SA A    M+  G  P + T
Sbjct: 1013 AGKAAEAGKMYEELLTKGWKPNVFTYNALIRGYSVSGSTDSAYAAYGRMIVGGCLPNSST 1072

Query: 582  YTAL 585
            Y  L
Sbjct: 1073 YMQL 1076



 Score = 62.8 bits (151), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 122/600 (20%), Positives = 230/600 (38%), Gaps = 72/600 (12%)

Query: 112 MMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKL 171
           +M+E  I LN   Y  ++  L K G+  EA   +Y +    G+ P +  Y+  + A  K 
Sbjct: 150 VMKEAGIVLNAYTYNGLVYFLVKSGFDREALE-VYRVMMVDGVVPSVRTYSVLMVAFGKR 208

Query: 172 HSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIW---------EDYIKH 222
             +      L  M++  V  N  +YT  +++    K     + I           D I H
Sbjct: 209 RDVETVLWLLREMEAHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITH 268

Query: 223 YSLSIFSLRKFVWSFTRLRDLKSAYETLQ-------HMVALAMMGKLYINRTSEGRLRSS 275
             L      + +    R+ D K  +  ++        +  + ++ K   N  S+     S
Sbjct: 269 TVLI-----QVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQ-----S 318

Query: 276 RLDIPIPLNALPVMKVLRW-----SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHT 330
            ++I    NA   MK   +     +++ VI A  +      A ++  +M+  G+ P  ++
Sbjct: 319 VMEI---WNA---MKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYS 372

Query: 331 YDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL---------SVECSKALELDL 381
           Y+  I   +      + +E+ K M  +  KP   T             S++  +  EL  
Sbjct: 373 YNSLISGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMK 432

Query: 382 AEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFG 440
           ++ ++  +         +A L       +   A ++F +++   + PD  TY ++     
Sbjct: 433 SKGIVPDVVAG------NAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCS 486

Query: 441 NVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYF 500
                       S+ D A +I     DM  NN     +++ +L+  L   G   E  + F
Sbjct: 487 KA----------SKFDEAVKIF---YDMIENNCVPDVLAVNSLIDTLYKAGRGDEAWRIF 533

Query: 501 CDSKTPLGTPT---YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSII 557
              K     PT   YNT+L  L    +    M + ++M     PPN  TYN ++DC    
Sbjct: 534 YQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKN 593

Query: 558 RCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLY 617
                A  ++  M   G  P   +Y  +I  L+    ++EA ++   +    IP D    
Sbjct: 594 GAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQMKKVLIP-DYATL 652

Query: 618 NTILKKACEKGRI-DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
            TIL    + G + + +  I +   Q   + D S+CH +  G +       ++E  ++++
Sbjct: 653 CTILPSFVKIGLMKEALHIIKDYFLQPGSKTDRSSCHSLMEGILKKAGIEKSIEFAEIIA 712



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 70/342 (20%), Positives = 132/342 (38%), Gaps = 43/342 (12%)

Query: 311  LAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLS 370
            +AE L  +M+ LG  P   TY+  + A+     +    E+LK+ ++ + K  +ST  T  
Sbjct: 773  IAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIE---EMLKVQEEMHRKGYESTYVT-- 827

Query: 371  VECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAK-MRQKLRPDI 429
                                       ++  ++      + E+AI ++   M Q   P  
Sbjct: 828  ---------------------------YNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTP 860

Query: 430  RTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGA 489
             TY  L           +  N+F+++        +E     N   ++   + N  +  G 
Sbjct: 861  CTYGPLLDGLLKAGRIEDAENLFNEM--------LEYGCKANCTIYN--ILLNGHRIAGN 910

Query: 490  EGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNI 549
               +  L Q   D        +Y  ++ +L +A + +  +  F+Q+   G+ P+  TYN+
Sbjct: 911  TEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNL 970

Query: 550  MIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEG 609
            +ID     +  + A +L + M + G  P   TY +LI  L   G   EA  + + +  +G
Sbjct: 971  LIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLTKG 1030

Query: 610  IPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
               +V  YN +++     G  D       +M      P+ ST
Sbjct: 1031 WKPNVFTYNALIRGYSVSGSTDSAYAAYGRMIVGGCLPNSST 1072



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 81/183 (44%), Gaps = 4/183 (2%)

Query: 489  AEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYN 548
            AE +  E+++Y C +   +    YN +L+    A  + +   +F+ M   GI P+  +Y 
Sbjct: 879  AENLFNEMLEYGCKANCTI----YNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYT 934

Query: 549  IMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLE 608
            I+ID                 ++  G  P  +TY  LI  L      +EA++L + +  +
Sbjct: 935  IIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKK 994

Query: 609  GIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSA 668
            GI  ++  YN+++    + G+      + E++     +P+  T + +  GY   G  +SA
Sbjct: 995  GIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLTKGWKPNVFTYNALIRGYSVSGSTDSA 1054

Query: 669  MEA 671
              A
Sbjct: 1055 YAA 1057



 Score = 48.1 bits (113), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 32/148 (21%), Positives = 68/148 (45%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TYNT++  LV+++   +A++++  + + G  P   TY  ++D        + A  L + M
Sbjct: 827 TYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEM 886

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           +  G       Y  L+      G+ ++  +L   +  +GI  D+  Y  I+   C+ G++
Sbjct: 887 LEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQL 946

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
           +       Q+ +  ++PD  T + +  G
Sbjct: 947 NDGLTYFRQLLEMGLEPDLITYNLLIDG 974


>gi|152717466|dbj|BAF73724.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 128/623 (20%), Positives = 245/623 (39%), Gaps = 54/623 (8%)

Query: 89  DFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFL 148
           DF  ++    R   P  V+  ++ ME K+I  +   + ++++  C    L  A +    L
Sbjct: 81  DFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKL 140

Query: 149 GERYGIYPILPVYNSFL-GACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQK 207
             + G++P +  +N+ L G C +       NL   + ++     N VT+T L+     + 
Sbjct: 141 -TKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETT-CRPNVVTFTTLMNGLCREG 198

Query: 208 NL----SAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAY------ETLQHMVALA 257
            +    + +  + ED ++   ++  ++   V    +  D  SA       E + H++   
Sbjct: 199 RIVEAVALLDRMMEDGLQPTQITYGTI---VDGMCKKGDTVSALNLLRKMEEVSHIIPNV 255

Query: 258 MMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLML 317
           ++    I+   +    S   ++   +    +   L    S ++  C   + S  AEQL+ 
Sbjct: 256 VIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSD-AEQLLQ 314

Query: 318 QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKAL 377
           +M    + P   TY+  I A V +       E+   M    + P   T +++     K  
Sbjct: 315 EMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQN 374

Query: 378 ELDLAEAL--LDQISRCT-NPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYE 433
            LD AE +  L     C+ N   F+  +       + +  +++  +M +  L  D  TY 
Sbjct: 375 RLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYN 434

Query: 434 LL---FSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAE 490
            L   F L G++NA  +                +  +M  + +    ++   LL  L   
Sbjct: 435 TLIHGFYLVGDLNAALD----------------LLQEMISSGLCPDIVTCDTLLDGLCDN 478

Query: 491 GMIRELIQYF---------CDSKTPLG-----TPTYNTVLHSLVEAQESHRAMEIFKQMK 536
           G +++ ++ F          D+  P         TYN ++  L+   +   A E++++M 
Sbjct: 479 GKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMP 538

Query: 537 TCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFD 596
             GI P+  TY+ MID          A+ +   M    F P  +T+T LI      G  D
Sbjct: 539 HRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVD 598

Query: 597 EALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVF 656
           + L L   +   GI  + + Y T++    + G I+    I ++M  + V PD  T   + 
Sbjct: 599 DGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNML 658

Query: 657 SGYVNCGFHNSAMEALQVLSMRM 679
           +G  +      A+  L+ L M M
Sbjct: 659 TGLWSKEELKRAVAMLEKLQMSM 681



 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 94/412 (22%), Positives = 168/412 (40%), Gaps = 34/412 (8%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +F+ ++H          A  L  QM     +P+  T+   +  +  +  +   + +L  M
Sbjct: 151 TFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRM 210

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP-FSAFLAACDTMDKPER 413
            ++ L+P   T  T+     K  +   A  LL ++   ++  P    + A  D++ K  R
Sbjct: 211 MEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGR 270

Query: 414 ---AIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
              A  +F +M++K + PD+ TY  +   F + +  + +     Q            +M 
Sbjct: 271 HSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCS-SGRWSDAEQLLQ------------EML 317

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLG----TPTYNTVLHSLVEAQES 525
              I    ++   L+ A   EG   E  + + D   P G    T TY++++    +    
Sbjct: 318 ERKISPDVVTYNALINAFVKEGKFFEAEELY-DEMLPRGIIPNTITYSSMIDGFCKQNRL 376

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
             A  +F  M T G  PN  T+N +ID     +       L+  M   G    T TY  L
Sbjct: 377 DAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTL 436

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI-DVIE-FIIEQMHQ- 642
           I      GD + AL+LL  +   G+  D++  +T+L   C+ G++ D +E F + Q  + 
Sbjct: 437 IHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKK 496

Query: 643 --------NKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
                   N V+PD  T + + SG +N G    A E  + +  R +  +  T
Sbjct: 497 DLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTIT 548



 Score = 69.3 bits (168), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 84/431 (19%), Positives = 169/431 (39%), Gaps = 65/431 (15%)

Query: 272 LRSSRLDIPIPLNALPVMKVLR---WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSS 328
           +R  R D+ I L      K +R   +SF+ +I           A     ++  LGL P  
Sbjct: 90  VRMERPDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDV 149

Query: 329 HTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ 388
            T++  +  +  +  +   + +   M +   +P   T  TL     +   +  A ALLD+
Sbjct: 150 VTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDR 209

Query: 389 ISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEE 448
           +                               M   L+P   TY  +      V+   ++
Sbjct: 210 M-------------------------------MEDGLQPTQITYGTI------VDGMCKK 232

Query: 449 GNMFSQVDSAKRINAIEMDMARNNIQHS-----------HISMKNLLKALGAEGMIRELI 497
           G+  S ++  +++  +   +  N + +S           H   +NL   +  +G+  +L 
Sbjct: 233 GDTVSALNLLRKMEEVS-HIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLF 291

Query: 498 QYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSII 557
                        TYN+++     +     A ++ ++M    I P+  TYN +I+     
Sbjct: 292 -------------TYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKE 338

Query: 558 RCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLY 617
             F  A  L   M+  G  P T+TY+++I         D A ++  L++ +G   +++ +
Sbjct: 339 GKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITF 398

Query: 618 NTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSM 677
           NT++   C   RID    ++ +M +  +  D +T + +  G+   G  N+A++ LQ +  
Sbjct: 399 NTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMIS 458

Query: 678 RMLCEEVSTLE 688
             LC ++ T +
Sbjct: 459 SGLCPDIVTCD 469



 Score = 43.5 bits (101), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 78/170 (45%), Gaps = 12/170 (7%)

Query: 519 LVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC-CSIIRCFKSASALVSM--MVRDGF 575
           +V  +     + ++++M+   I  +  ++ I+I C CS   C K   AL +   + + G 
Sbjct: 89  VVRMERPDLVISLYQKMERKQIRCDIYSFTILIKCFCS---CSKLPFALSTFGKLTKLGL 145

Query: 576 YPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEF 635
           +P  +T+  L+  L       EALNL   +       +V+ + T++   C +GRI     
Sbjct: 146 HPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVA 205

Query: 636 IIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVS 685
           ++++M ++ +QP   T   +  G    G   SA+  L+ +      EEVS
Sbjct: 206 LLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKM------EEVS 249


>gi|115470153|ref|NP_001058675.1| Os07g0101200 [Oryza sativa Japonica Group]
 gi|50508922|dbj|BAD31827.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|113610211|dbj|BAF20589.1| Os07g0101200 [Oryza sativa Japonica Group]
          Length = 738

 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/153 (31%), Positives = 76/153 (49%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TYNT++  L +      AM   ++M   G  P+  TYN +ID    I   + A+ L+   
Sbjct: 260 TYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDA 319

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           V  GF P  +TY +LI  L   GD + AL L +    +GI  D+++YN+++K  C +G I
Sbjct: 320 VFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLI 379

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
                ++ +M +    PD  T + V +G    G
Sbjct: 380 LHALQVMNEMAEEGCHPDIQTYNIVINGLCKMG 412



 Score = 75.9 bits (185), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 60/277 (21%), Positives = 120/277 (43%), Gaps = 17/277 (6%)

Query: 405 CDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAI 464
           C+    PE A+++   MR    PD+ TY  L       + P E  +   ++ +      +
Sbjct: 235 CEAGRLPE-AVRLVDGMRAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQ---GCL 290

Query: 465 EMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVE 521
             D   N I   +  +           M++E  +   D+      P   TY ++++ L  
Sbjct: 291 PDDFTYNTIIDGYCKIS----------MVQEATELLKDAVFKGFVPDQVTYCSLINGLCA 340

Query: 522 AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMT 581
             +  RA+E+F + +  GI P+   YN ++    +      A  +++ M  +G +P   T
Sbjct: 341 EGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQT 400

Query: 582 YTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMH 641
           Y  +I  L   G+  +A  +++   ++G   DV  +NT++   C++ ++D    ++E+M 
Sbjct: 401 YNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMW 460

Query: 642 QNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678
           +  + PD  T + V +G    G  N   E  Q + ++
Sbjct: 461 EYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILK 497



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 78/363 (21%), Positives = 143/363 (39%), Gaps = 31/363 (8%)

Query: 326 PSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL-SVECSKALELDLAEA 384
           P   TY+  IR +      +  M  L+ M      P D T  T+    C  ++  +  E 
Sbjct: 256 PDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATEL 315

Query: 385 LLDQISRCTNPK--PFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYE-------- 433
           L D + +   P    + + +         ERA+++F + + K ++PDI  Y         
Sbjct: 316 LKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCL 375

Query: 434 --LLFSLFGNVNAPYEEG----------------NMFSQVDSAKRINAIEMDMARNNIQH 475
             L+      +N   EEG                 M +  D+   +N   M     ++  
Sbjct: 376 QGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFT 435

Query: 476 SHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQM 535
            +  +    K L  +  + +L++   +      T TYN+VL+ L +A + +   E F++M
Sbjct: 436 FNTLIDGYCKRLKLDSAL-QLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEM 494

Query: 536 KTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDF 595
              G  PN  TYNI+I+        + AS ++  M ++G +P  +++  LI      GD 
Sbjct: 495 ILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDL 554

Query: 596 DEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFV 655
           + A  L   +  +G       +NT++     K  + + E I ++M     + D  T   +
Sbjct: 555 EGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVL 614

Query: 656 FSG 658
             G
Sbjct: 615 IDG 617


>gi|302767030|ref|XP_002966935.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
 gi|300164926|gb|EFJ31534.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
          Length = 428

 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 84/368 (22%), Positives = 150/368 (40%), Gaps = 21/368 (5%)

Query: 319 MQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALE 378
           M S   +  +  Y+  I  +   R  R+ +E+L +M  N       T  TL     K+ +
Sbjct: 1   MASRHFRLDAAIYNTLIAGLCKARKPRHALELLHVMAANGYDASVVTYTTLIDGLCKSGD 60

Query: 379 LDLAEALLDQISRCT---NPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYEL 434
           LD A+ALL +++      N   ++A +       +P  AI+   +M R    PD+ TY  
Sbjct: 61  LDAAQALLQKMADAGCAPNVVTYTALIDGLCKARRPHDAIQTVKRMLRSGCEPDLVTYNS 120

Query: 435 LFSLFGNVNAPYEEGNMFSQ--VDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGM 492
           L       N   + G +  +  ++S +  + +      N           L K L     
Sbjct: 121 LIHGLCMANRMDDAGLVLQELMIESGRIPDVV----TYNTFISGLCKAGKLDKGL----- 171

Query: 493 IRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID 552
             E+++            T+ +++  L +A     A ++FK M   G  P++ TY+IM+D
Sbjct: 172 --EMLEEMDRGGISPDVVTFCSIISGLCKANRIDDAFQVFKGMLERGCVPDSLTYSIMLD 229

Query: 553 CCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPH 612
             S      +   ++  MV+ G Y  + TY  LI  L+  GD + A    +     G   
Sbjct: 230 NLSRANRLDTVEEVLEHMVKSGHYALSATYAPLIHALIRAGDIESASWAYEQAMEAGCVM 289

Query: 613 DVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEAL 672
           +V  +N  +   C  G+  + + I+  M ++   P+  + +FV  G    G  + A +  
Sbjct: 290 EVYTHNAFIGALCRSGKFPLAKNILLGMIESGSLPNLLSYNFVIDGLCKSGNVDDAWK-- 347

Query: 673 QVLSMRML 680
             LS +ML
Sbjct: 348 --LSRKML 353



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 76/373 (20%), Positives = 164/373 (43%), Gaps = 21/373 (5%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ +I    ++ +   A+ L+ +M   G  P+  TY   I  +   R   + ++ +K M
Sbjct: 47  TYTTLIDGLCKSGDLDAAQALLQKMADAGCAPNVVTYTALIDGLCKARRPHDAIQTVKRM 106

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQI----SRCTNPKPFSAFLAACDTMDK 410
            ++  +P   T  +L      A  +D A  +L ++     R  +   ++ F++      K
Sbjct: 107 LRSGCEPDLVTYNSLIHGLCMANRMDDAGLVLQELMIESGRIPDVVTYNTFISGLCKAGK 166

Query: 411 PERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI--NAIEMD 467
            ++ +++  +M R  + PD+ T+  + S     N          ++D A ++    +E  
Sbjct: 167 LDKGLEMLEEMDRGGISPDVVTFCSIISGLCKAN----------RIDDAFQVFKGMLERG 216

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHR 527
              +++ +S I + NL +A   +  + E++++   S     + TY  ++H+L+ A +   
Sbjct: 217 CVPDSLTYS-IMLDNLSRANRLD-TVEEVLEHMVKSGHYALSATYAPLIHALIRAGDIES 274

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A   ++Q    G      T+N  I        F  A  ++  M+  G  P  ++Y  +I 
Sbjct: 275 ASWAYEQAMEAGCVMEVYTHNAFIGALCRSGKFPLAKNILLGMIESGSLPNLLSYNFVID 334

Query: 588 ILLDYGDFDEALNLLDLVSLEG-IPHDVLLYNTILKKACEKGRIDVIEFIIEQMH-QNKV 645
            L   G+ D+A  L   +   G    DV+ +NT++   C+ GR+   + ++++M  +N  
Sbjct: 335 GLCKSGNVDDAWKLSRKMLDSGCCKPDVIFFNTLISGFCKAGRLSQAQQLLKEMKAKNIC 394

Query: 646 QPDPSTCHFVFSG 658
            PD  T + +  G
Sbjct: 395 VPDVVTYNTMIDG 407



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 81/182 (44%), Gaps = 1/182 (0%)

Query: 507 LGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASAL 566
           L    YNT++  L +A++   A+E+   M   G   +  TY  +ID         +A AL
Sbjct: 8   LDAAIYNTLIAGLCKARKPRHALELLHVMAANGYDASVVTYTTLIDGLCKSGDLDAAQAL 67

Query: 567 VSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE 626
           +  M   G  P  +TYTALI  L       +A+  +  +   G   D++ YN+++   C 
Sbjct: 68  LQKMADAGCAPNVVTYTALIDGLCKARRPHDAIQTVKRMLRSGCEPDLVTYNSLIHGLCM 127

Query: 627 KGRIDVIEFIIEQ-MHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVS 685
             R+D    ++++ M ++   PD  T +   SG    G  +  +E L+ +    +  +V 
Sbjct: 128 ANRMDDAGLVLQELMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGISPDVV 187

Query: 686 TL 687
           T 
Sbjct: 188 TF 189



 Score = 43.5 bits (101), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 71/359 (19%), Positives = 142/359 (39%), Gaps = 11/359 (3%)

Query: 40  LTTTMGLNEESISKATQMQIVDALCR-GERSRASHLLLNLGHAHHSLGADDFFHILNYCA 98
           L   M  N    S  T   ++D LC+ G+   A  LL  +  A  +     +  +++   
Sbjct: 32  LLHVMAANGYDASVVTYTTLIDGLCKSGDLDAAQALLQKMADAGCAPNVVTYTALIDGLC 91

Query: 99  RSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPIL 158
           ++  P   ++T + M       +   Y  ++  LC    +++A  ++  L    G  P +
Sbjct: 92  KARRPHDAIQTVKRMLRSGCEPDLVTYNSLIHGLCMANRMDDAGLVLQELMIESGRIPDV 151

Query: 159 PVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWED 218
             YN+F+    K   +      L+ MD   +  + VT+  ++        +    ++++ 
Sbjct: 152 VTYNTFISGLCKAGKLDKGLEMLEEMDRGGISPDVVTFCSIISGLCKANRIDDAFQVFKG 211

Query: 219 YIKHYSL-SIFSLRKFVWSFTRLRDLKSAYETLQHMV-----AL-AMMGKLYINRTSEGR 271
            ++   +    +    + + +R   L +  E L+HMV     AL A    L       G 
Sbjct: 212 MLERGCVPDSLTYSIMLDNLSRANRLDTVEEVLEHMVKSGHYALSATYAPLIHALIRAGD 271

Query: 272 LRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTY 331
           + S+       + A  VM+V  ++ +  I A  R+    LA+ ++L M   G  P+  +Y
Sbjct: 272 IESASWAYEQAMEAGCVMEV--YTHNAFIGALCRSGKFPLAKNILLGMIESGSLPNLLSY 329

Query: 332 DGFIRAIVSDRGLRNGMEV-LKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI 389
           +  I  +     + +  ++  K++     KP      TL     KA  L  A+ LL ++
Sbjct: 330 NFVIDGLCKSGNVDDAWKLSRKMLDSGCCKPDVIFFNTLISGFCKAGRLSQAQQLLKEM 388


>gi|302758676|ref|XP_002962761.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
 gi|300169622|gb|EFJ36224.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
          Length = 707

 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 126/591 (21%), Positives = 230/591 (38%), Gaps = 43/591 (7%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y ++   LCK G ++EA  L+  +    G  P L  YN+ +    K      A   L+ +
Sbjct: 118 YSILADGLCKRGRIDEAFELVKEMSGN-GCTPNLVTYNTLIDGLCKASKTEKAYELLETL 176

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH-YSLSIFSLRKFVWSFTRLRDL 243
            S     + VTYT ++     +  L    ++ E  +K   + S+ +    +    R   +
Sbjct: 177 VSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRV 236

Query: 244 KSAYETLQHMVALAMMGKL--YINRTSEGRLRSSRLDIPIPLNALPVMKVLRWS-FSDVI 300
             A+   + MV+         Y++  + G  +SSR        A  V+  +R + + DV 
Sbjct: 237 DEAHHIFKEMVSKDCTADALAYVSLVN-GYCKSSRTK-----EAQKVVDGIRGTPYIDVY 290

Query: 301 HAC--GRTQNSGLAE--QLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQ 356
           +A   G  +   L E   +   M   G  P+  TY+  +  +     +      L+ M  
Sbjct: 291 NALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHS 350

Query: 357 NNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPER--- 413
               P   +   +     KA +   A  +LDQ+ +   P     +        K ER   
Sbjct: 351 AGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDD 410

Query: 414 AIKIFAKM-RQKLRPDIRTYELLFSLFGNVNA---PYE-------EGNMFSQVDSAKRI- 461
           A+ I   M +  + PD  TY  L S     N     YE        G + S   +   I 
Sbjct: 411 AVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTII 470

Query: 462 -----------NAIEMD-MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGT 509
                        + MD M  + ++ + ++    +  L  EG + E      +  T    
Sbjct: 471 DRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEMDTLRDE 530

Query: 510 PTYNTVLHSLVEAQESHRAMEIFKQMKTC-GIPPNAATYNIMIDCCSIIRCFKSASALVS 568
            +Y TV+  L +A++  RA ++ ++M    G+   + T+N++ID  +  +    A  L+ 
Sbjct: 531 VSYTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLE 590

Query: 569 MMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
           +MV+ G  P  +TY  +I  L      D+A  L D +++ GI    + Y  ++   C +G
Sbjct: 591 LMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQG 650

Query: 629 RIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRM 679
           R      ++E+M  +  + D   C  ++      G    A E L+ ++ +M
Sbjct: 651 RGKEALQVLEEMASSDCEIDDLKCRKLYLALRGQGRGEEAAELLRRMTTKM 701



 Score = 80.9 bits (198), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 100/540 (18%), Positives = 210/540 (38%), Gaps = 28/540 (5%)

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
           M E+++  +   Y +++  LCK    ++AS +++ + +R G+ P    +NS +    K  
Sbjct: 1   MNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDR-GVTPDTVTFNSIMDGLCKAG 59

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH-YSLSIFSLR 231
               A+  L +M  R    +  TY  L+     Q+N+     + ++++   +   + +  
Sbjct: 60  KFERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYS 119

Query: 232 KFVWSFTRLRDLKSAYETLQHMVALAMMGKLYI-NRTSEGRLRSSRLDIPIPLNALPVMK 290
                  +   +  A+E ++ M        L   N   +G  ++S+ +      A  +++
Sbjct: 120 ILADGLCKRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTE-----KAYELLE 174

Query: 291 VLRWS--------FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDR 342
            L  S        ++ ++    +      A +++  M   G  PS  TY   +  +    
Sbjct: 175 TLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTG 234

Query: 343 GLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFL 402
            +     + K M   +         +L     K+     A+ ++D I        ++A +
Sbjct: 235 RVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRGTPYIDVYNALM 294

Query: 403 AACDTMDKPERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI 461
                  + +    +F  M  +   P+I+TY ++           E       + SA  +
Sbjct: 295 DGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCV 354

Query: 462 NAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVE 521
                     ++   +I +  L KA       R+++     +  P    TYNT++    +
Sbjct: 355 ---------PDVVSYNIIIDGLFKA-SKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCK 404

Query: 522 AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDG-FYPQTM 580
            +    A+ I K M   G+ P+  TYN +I   S       A  L+  M+R+G       
Sbjct: 405 EERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACT 464

Query: 581 TYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQM 640
           TY  +I  L   G   +AL L+D ++  G+  + + YN  + + C++GR+D    ++ +M
Sbjct: 465 TYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEM 524



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 78/165 (47%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TYN ++  L +A ++ +A E+  +M   G+ P+  T+N ++D       F+ A +L+++M
Sbjct: 12  TYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVM 71

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
                 P   TY  LI  L    + D A  L+D     G   DV+ Y+ +    C++GRI
Sbjct: 72  AERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSILADGLCKRGRI 131

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
           D    ++++M  N   P+  T + +  G         A E L+ L
Sbjct: 132 DEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETL 176



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 83/195 (42%), Gaps = 3/195 (1%)

Query: 468 MARNNIQHSHISMKNLLKALGAEGMI---RELIQYFCDSKTPLGTPTYNTVLHSLVEAQE 524
           MA  N + S  +   L+  L  +  +   + L+  F  S       TY+ +   L +   
Sbjct: 71  MAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSILADGLCKRGR 130

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
              A E+ K+M   G  PN  TYN +ID        + A  L+  +V  GF P  +TYT 
Sbjct: 131 IDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSGFVPDVVTYTI 190

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
           ++  L   G  D+AL +++ +   G    V+ Y  +++  C  GR+D    I ++M    
Sbjct: 191 IVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKD 250

Query: 645 VQPDPSTCHFVFSGY 659
              D      + +GY
Sbjct: 251 CTADALAYVSLVNGY 265



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 85/386 (22%), Positives = 146/386 (37%), Gaps = 52/386 (13%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A  L+  M     +PS  TY+  I  +   + +     ++     +   P   T + L+ 
Sbjct: 64  AHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSILAD 123

Query: 372 ECSKALELDLAEALLDQIS--RCT-NPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLRP 427
              K   +D A  L+ ++S   CT N   ++  +       K E+A ++   +      P
Sbjct: 124 GLCKRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSGFVP 183

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL 487
           D+ TY ++      V+   +EG +       K +  +E  M +     S I+   L++ L
Sbjct: 184 DVVTYTII------VDGLCKEGRL------DKALKMVE-GMLKRGCTPSVITYTALMEGL 230

Query: 488 GAEGMIRE----------------------LIQYFCDSKTP----------LGTP---TY 512
              G + E                      L+  +C S              GTP    Y
Sbjct: 231 CRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRGTPYIDVY 290

Query: 513 NTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVR 572
           N ++    +         +F+ M   G  PN  TYNI++D          A   +  M  
Sbjct: 291 NALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHS 350

Query: 573 DGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDV 632
            G  P  ++Y  +I  L       EA  +LD +   GIP D + YNT++ + C++ R D 
Sbjct: 351 AGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDD 410

Query: 633 IEFIIEQMHQNKVQPDPSTCHFVFSG 658
              I++ M +  V PD  T + + SG
Sbjct: 411 AVGILKNMIKAGVDPDNVTYNTLISG 436



 Score = 69.3 bits (168), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 96/450 (21%), Positives = 169/450 (37%), Gaps = 31/450 (6%)

Query: 227 IFSLRKFVWSFTRLRDLKSAYETLQHMVALAMM-GKLYINRTSEGRLRSSRLDIPIPLNA 285
           +F+    +    +      A E L  MV   +    +  N   +G  ++ + +    L A
Sbjct: 10  VFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLA 69

Query: 286 LPVMKVLRWS---FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDR 342
           +   +  R S   ++ +I    + QN   A+ L+ +  S G  P   TY      +    
Sbjct: 70  VMAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSILADGLCKRG 129

Query: 343 GLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFL 402
            +    E++K M  N   P   T  TL     KA + + A  LL+ +           + 
Sbjct: 130 RIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSGFVPDVVTYT 189

Query: 403 AACDTMDKPER---AIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDS- 457
              D + K  R   A+K+   M ++   P + TY  L           E  ++F ++ S 
Sbjct: 190 IIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSK 249

Query: 458 ----------------AKRINAIEMDMARNNIQHS-HISMKN-LLKALGAEGMIRELIQY 499
                            K     E     + I+ + +I + N L+     EG + E+   
Sbjct: 250 DCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRGTPYIDVYNALMDGYCKEGRLDEIPNV 309

Query: 500 FCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSI 556
           F D       P   TYN V+  L +  +   A    + M + G  P+  +YNI+ID    
Sbjct: 310 FEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFK 369

Query: 557 IRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLL 616
               K A  ++  M++ G  P  +TY  L+        FD+A+ +L  +   G+  D + 
Sbjct: 370 ASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVT 429

Query: 617 YNTILKKACEKGRI-DVIEFIIEQMHQNKV 645
           YNT++    +  R+ D  E + E +    V
Sbjct: 430 YNTLISGLSQTNRLGDAYELMHEMLRNGCV 459



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 80/184 (43%)

Query: 495 ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCC 554
           E++    D      T T+N+++  L +A +  RA  +   M      P+  TYN +I   
Sbjct: 31  EMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERNCRPSCCTYNTLISGL 90

Query: 555 SIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDV 614
              +    A  LV   V  GF P  +TY+ L   L   G  DEA  L+  +S  G   ++
Sbjct: 91  CKQQNVDRAKTLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFELVKEMSGNGCTPNL 150

Query: 615 LLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQV 674
           + YNT++   C+  + +    ++E +  +   PD  T   +  G    G  + A++ ++ 
Sbjct: 151 VTYNTLIDGLCKASKTEKAYELLETLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEG 210

Query: 675 LSMR 678
           +  R
Sbjct: 211 MLKR 214



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 101/247 (40%), Gaps = 12/247 (4%)

Query: 423 QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKN 482
           +K+ PD+ TY +L       +   +   M  ++        ++  +  + +  + I M  
Sbjct: 4   RKVAPDVFTYNILIDGLCKASKTDKASEMLHEM--------VDRGVTPDTVTFNSI-MDG 54

Query: 483 LLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPP 542
           L KA G       L+    +        TYNT++  L + Q   RA  +  +  + G  P
Sbjct: 55  LCKA-GKFERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVP 113

Query: 543 NAATYNIMID-CCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNL 601
           +  TY+I+ D  C   R    A  LV  M  +G  P  +TY  LI  L      ++A  L
Sbjct: 114 DVVTYSILADGLCKRGR-IDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYEL 172

Query: 602 LDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVN 661
           L+ +   G   DV+ Y  I+   C++GR+D    ++E M +    P   T   +  G   
Sbjct: 173 LETLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCR 232

Query: 662 CGFHNSA 668
            G  + A
Sbjct: 233 TGRVDEA 239



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 65/137 (47%)

Query: 540 IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEAL 599
           + P+  TYNI+ID          AS ++  MV  G  P T+T+ +++  L   G F+ A 
Sbjct: 6   VAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAH 65

Query: 600 NLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
           +LL +++          YNT++   C++  +D  + ++++   +   PD  T   +  G 
Sbjct: 66  SLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSILADGL 125

Query: 660 VNCGFHNSAMEALQVLS 676
              G  + A E ++ +S
Sbjct: 126 CKRGRIDEAFELVKEMS 142


>gi|168023641|ref|XP_001764346.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162684498|gb|EDQ70900.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 978

 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 77/340 (22%), Positives = 142/340 (41%), Gaps = 50/340 (14%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           ++ +I AC +     L  Q+  +M+  G++ + HT+   I        L        IM 
Sbjct: 333 YTSLISACAKAGKVDLLFQIFHEMEVAGIEANVHTFGAMIDGCARAGQLPKAFGAYGIMI 392

Query: 356 QNNLKPQDSTIATLSVECSKALELDLA-EALLDQISRCTNPKP----FSAFLAACDTMDK 410
             N+KP      TL   C++A  +  A + L D  +  T  KP    + A ++AC    +
Sbjct: 393 SKNVKPDRVIFNTLINACTRAGAVQRAFDVLTDMKAEATPIKPDHVTYGALISACARAGE 452

Query: 411 PERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
            +RA++++  MR+    +++     ++    V+A  ++GN    VD A  +     D+ +
Sbjct: 453 VDRALEVYQNMRES---NVKGSPACYTAV--VHACSQKGN----VDYALLVYD---DLKK 500

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAME 530
           + ++   +    L+ A G                                 AQ+  +A  
Sbjct: 501 DGVKPDEVFFSALVDAAG--------------------------------HAQDIEKAFS 528

Query: 531 IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590
           I   MK  G+ P A  Y+ ++  CS +  ++ A  +   +   G  P   T+ AL+  L 
Sbjct: 529 IIANMKKEGLKPGAVVYSSLMGVCSNLGNWEKALEVYQDIRSSGLQPTVSTFNALMTALC 588

Query: 591 DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           +   F  AL++L  V   GI  + + Y +IL +ACEK ++
Sbjct: 589 EANQFTRALSILQDVKNSGIMPNQISY-SILLRACEKEKM 627



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 66/367 (17%), Positives = 152/367 (41%), Gaps = 24/367 (6%)

Query: 289 MKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGM 348
           MKV    F +   A G  +++    +LM +  +L        Y   +      + +   +
Sbjct: 262 MKVNHSKFYEACKARGSVEDAFAFAKLMREFSTL------QHYTMLLSVCCHAKDIDGAL 315

Query: 349 EVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRC---TNPKPFSAFLAAC 405
            VL +++   LK       +L   C+KA ++DL   +  ++       N   F A +  C
Sbjct: 316 RVLALLESRGLKADCMFYTSLISACAKAGKVDLLFQIFHEMEVAGIEANVHTFGAMIDGC 375

Query: 406 DTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAI 464
               +  +A   +  M  K ++PD   +  L      +NA    G +    D        
Sbjct: 376 ARAGQLPKAFGAYGIMISKNVKPDRVIFNTL------INACTRAGAVQRAFDVL-----T 424

Query: 465 EMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTP--LGTPT-YNTVLHSLVE 521
           +M      I+  H++   L+ A    G +   ++ + + +     G+P  Y  V+H+  +
Sbjct: 425 DMKAEATPIKPDHVTYGALISACARAGEVDRALEVYQNMRESNVKGSPACYTAVVHACSQ 484

Query: 522 AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMT 581
                 A+ ++  +K  G+ P+   ++ ++D     +  + A ++++ M ++G  P  + 
Sbjct: 485 KGNVDYALLVYDDLKKDGVKPDEVFFSALVDAAGHAQDIEKAFSIIANMKKEGLKPGAVV 544

Query: 582 YTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMH 641
           Y++L+ +  + G++++AL +   +   G+   V  +N ++   CE  +      I++ + 
Sbjct: 545 YSSLMGVCSNLGNWEKALEVYQDIRSSGLQPTVSTFNALMTALCEANQFTRALSILQDVK 604

Query: 642 QNKVQPD 648
            + + P+
Sbjct: 605 NSGIMPN 611



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/255 (18%), Positives = 104/255 (40%), Gaps = 14/255 (5%)

Query: 433 ELLFSLFGNVNAPYEEGNMFS---QVDSAKRINAIEMD------MARNNIQHSHISMKNL 483
           +LLF +F  +     E N+ +    +D   R   +         M   N++   +    L
Sbjct: 347 DLLFQIFHEMEVAGIEANVHTFGAMIDGCARAGQLPKAFGAYGIMISKNVKPDRVIFNTL 406

Query: 484 LKALGAEGMIRELIQYFCDSK---TPLGTP--TYNTVLHSLVEAQESHRAMEIFKQMKTC 538
           + A    G ++       D K   TP+     TY  ++ +   A E  RA+E+++ M+  
Sbjct: 407 INACTRAGAVQRAFDVLTDMKAEATPIKPDHVTYGALISACARAGEVDRALEVYQNMRES 466

Query: 539 GIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEA 598
            +  + A Y  ++  CS       A  +   + +DG  P  + ++AL+       D ++A
Sbjct: 467 NVKGSPACYTAVVHACSQKGNVDYALLVYDDLKKDGVKPDEVFFSALVDAAGHAQDIEKA 526

Query: 599 LNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
            +++  +  EG+    ++Y++++      G  +    + + +  + +QP  ST + + + 
Sbjct: 527 FSIIANMKKEGLKPGAVVYSSLMGVCSNLGNWEKALEVYQDIRSSGLQPTVSTFNALMTA 586

Query: 659 YVNCGFHNSAMEALQ 673
                    A+  LQ
Sbjct: 587 LCEANQFTRALSILQ 601



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 95/458 (20%), Positives = 166/458 (36%), Gaps = 98/458 (21%)

Query: 133 CKG-GYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGK 191
           CK  G +E+A      + E    +  L  Y   L  C     +  A   L L++SR +  
Sbjct: 273 CKARGSVEDAFAFAKLMRE----FSTLQHYTMLLSVCCHAKDIDGALRVLALLESRGLKA 328

Query: 192 NEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQ 251
           + + YT L+        +  + +I+      + + +  +   V +F  + D         
Sbjct: 329 DCMFYTSLISACAKAGKVDLLFQIF------HEMEVAGIEANVHTFGAMID--------- 373

Query: 252 HMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVM-----KVLRWSFSDVIHACGRT 306
                             G  R+ +L  P    A  +M     K  R  F+ +I+AC R 
Sbjct: 374 ------------------GCARAGQL--PKAFGAYGIMISKNVKPDRVIFNTLINACTRA 413

Query: 307 QNSGLAEQLMLQM--QSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDS 364
                A  ++  M  ++  ++P   TY   I A      +   +EV + M+++N+K   +
Sbjct: 414 GAVQRAFDVLTDMKAEATPIKPDHVTYGALISACARAGEVDRALEVYQNMRESNVKGSPA 473

Query: 365 TIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDKPERAIKIFAK 420
               +   CS+   +D A  + D + +    KP    FSA + A       E+A  I A 
Sbjct: 474 CYTAVVHACSQKGNVDYALLVYDDLKK-DGVKPDEVFFSALVDAAGHAQDIEKAFSIIAN 532

Query: 421 MRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHIS 479
           M+++ L+P    Y  L  +  N+                                     
Sbjct: 533 MKKEGLKPGAVVYSSLMGVCSNLG------------------------------------ 556

Query: 480 MKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCG 539
             N  KAL       E+ Q    S       T+N ++ +L EA +  RA+ I + +K  G
Sbjct: 557 --NWEKAL-------EVYQDIRSSGLQPTVSTFNALMTALCEANQFTRALSILQDVKNSG 607

Query: 540 IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYP 577
           I PN  +Y+I++  C   +    A  L    + +G  P
Sbjct: 608 IMPNQISYSILLRACEKEKMADMALDLYMTALSEGIKP 645



 Score = 50.1 bits (118), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 40/178 (22%), Positives = 70/178 (39%), Gaps = 2/178 (1%)

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIP--PNAATYNIMIDCCSIIRCFKSASALVSM 569
           +NT++++   A    RA ++   MK    P  P+  TY  +I  C+       A  +   
Sbjct: 403 FNTLINACTRAGAVQRAFDVLTDMKAEATPIKPDHVTYGALISACARAGEVDRALEVYQN 462

Query: 570 MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
           M           YTA++      G+ D AL + D +  +G+  D + ++ ++  A     
Sbjct: 463 MRESNVKGSPACYTAVVHACSQKGNVDYALLVYDDLKKDGVKPDEVFFSALVDAAGHAQD 522

Query: 630 IDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTL 687
           I+    II  M +  ++P       +     N G    A+E  Q +    L   VST 
Sbjct: 523 IEKAFSIIANMKKEGLKPGAVVYSSLMGVCSNLGNWEKALEVYQDIRSSGLQPTVSTF 580


>gi|414865374|tpg|DAA43931.1| TPA: hypothetical protein ZEAMMB73_168023 [Zea mays]
          Length = 793

 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 86/389 (22%), Positives = 171/389 (43%), Gaps = 25/389 (6%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ +++A  R    G A  L+ +M+  G+ P+  TY+  + A      ++   +V++ M
Sbjct: 246 TYNTLLNAHCRKGMLGEARTLLARMKKEGIVPTRATYNTLVSAYARLGWIKQATDVVEAM 305

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDK 410
                +P   T   L+    +A ++D A  L D++ +     P    ++  + AC    +
Sbjct: 306 TAFGFEPDLWTYNVLAAGLCQAGKVDEAFKLKDEMEQLGIVSPDVVTYNTLVDACFKCQR 365

Query: 411 PERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
              A+ +  +MR+K ++  + T+ ++      V     EG    Q++ A  +  +EM M 
Sbjct: 366 SSDALNLLEEMREKGVKSSLVTHNII------VKGLCREG----QLEEA--LGRLEM-MT 412

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESH 526
              +    I+   L+ A    G + +   L+     S   + T T NT+L++L + +   
Sbjct: 413 EEGLTPDVITYNTLIDASCKAGNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKRYE 472

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALV--SMMVRDGFYPQTMTYTA 584
            A E+ +     G  P+  +Y  ++   +  + +K   AL     M++    P   TY  
Sbjct: 473 EAEELLRAPPQRGFVPDEVSYGTVM--AAYFKEYKPEPALCLWDEMIKRKLTPSISTYNT 530

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
           LIK L   G   EA++ L+ +   G+  D   YN I+   C++G ++       +M +N 
Sbjct: 531 LIKGLSTMGKLTEAIDKLNELMEMGLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMVENS 590

Query: 645 VQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
            +PD  TC+ + +G    G    AM+  +
Sbjct: 591 FKPDVVTCNTLMNGLCLYGRLEKAMKLFE 619



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 126/589 (21%), Positives = 222/589 (37%), Gaps = 71/589 (12%)

Query: 62  ALCRGERSRASHLLLNLGHAHHSLGA-----DDFFHILNYCARSPD--PLFVMETWRMME 114
           AL    R R  HL   L H+    G           +L+  ARSP   P   ++ +  + 
Sbjct: 142 ALSTYARLRLPHLAAQLLHSFRRRGCVRPSLQAANAVLSALARSPSTSPQASLDAFHSLI 201

Query: 115 EKEIGLNNKCYLLMMQALCKGGYLEEA-SNLIYFLGERYGIYPILPVYNSFLGACAKLHS 173
              +  N+  + L++   C  G L +A S L    G  +G+ P    YN+ L A  +   
Sbjct: 202 ALRLHPNHYTFNLLVHTHCSKGTLADALSTLSKMQG--FGLSPDAVTYNTLLNAHCRKGM 259

Query: 174 MVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKF 233
           +  A   L  M    +     TY  L                                  
Sbjct: 260 LGEARTLLARMKKEGIVPTRATYNTL---------------------------------- 285

Query: 234 VWSFTRLRDLKSAYETLQHMVALAMMGKLYI-NRTSEGRLRSSRLDIPIPLN----ALPV 288
           V ++ RL  +K A + ++ M A      L+  N  + G  ++ ++D    L      L +
Sbjct: 286 VSAYARLGWIKQATDVVEAMTAFGFEPDLWTYNVLAAGLCQAGKVDEAFKLKDEMEQLGI 345

Query: 289 MKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGM 348
           +     +++ ++ AC + Q S  A  L+ +M+  G++ S  T++  ++ +  +  L   +
Sbjct: 346 VSPDVVTYNTLVDACFKCQRSSDALNLLEEMREKGVKSSLVTHNIIVKGLCREGQLEEAL 405

Query: 349 EVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT---NPKPFSAFLAAC 405
             L++M +  L P   T  TL     KA  +  A  L+D++ R     +    +  L   
Sbjct: 406 GRLEMMTEEGLTPDVITYNTLIDASCKAGNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNL 465

Query: 406 DTMDKPERAIKIF-AKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAI 464
               + E A ++  A  ++   PD  +Y       G V A Y     F +      +  +
Sbjct: 466 CKEKRYEEAEELLRAPPQRGFVPDEVSY-------GTVMAAY-----FKEYKPEPAL-CL 512

Query: 465 EMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCD----SKTPLGTPTYNTVLHSLV 520
             +M +  +  S  +   L+K L   G + E I    +       P  T TYN ++H+  
Sbjct: 513 WDEMIKRKLTPSISTYNTLIKGLSTMGKLTEAIDKLNELMEMGLVPDDT-TYNIIIHAYC 571

Query: 521 EAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTM 580
           +  +  +A +   +M      P+  T N +++   +    + A  L    V  G     +
Sbjct: 572 KEGDLEKAFQFHNKMVENSFKPDVVTCNTLMNGLCLYGRLEKAMKLFESWVEKGKKVDVI 631

Query: 581 TYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
           TY  LI+ L    D D AL     + + G+  DV  YN +L    E GR
Sbjct: 632 TYNTLIQALCKDNDVDTALRFFADMEVRGLQPDVFTYNVLLSALSEAGR 680



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 71/281 (25%), Positives = 131/281 (46%), Gaps = 25/281 (8%)

Query: 414 AIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNN 472
           A+   +KM+   L PD  TY  L      +NA   +G     +  A+ + A    M +  
Sbjct: 228 ALSTLSKMQGFGLSPDAVTYNTL------LNAHCRKG----MLGEARTLLA---RMKKEG 274

Query: 473 IQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLG-TP---TYNTVLHSLVEAQESHRA 528
           I  +  +   L+ A    G I++      ++ T  G  P   TYN +   L +A +   A
Sbjct: 275 IVPTRATYNTLVSAYARLGWIKQATD-VVEAMTAFGFEPDLWTYNVLAAGLCQAGKVDEA 333

Query: 529 MEIFKQMKTCGI-PPNAATYNIMIDCCSIIRCFKSASA--LVSMMVRDGFYPQTMTYTAL 585
            ++  +M+  GI  P+  TYN ++D C   +C +S+ A  L+  M   G     +T+  +
Sbjct: 334 FKLKDEMEQLGIVSPDVVTYNTLVDAC--FKCQRSSDALNLLEEMREKGVKSSLVTHNII 391

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           +K L   G  +EAL  L++++ EG+  DV+ YNT++  +C+ G +     ++++M ++ +
Sbjct: 392 VKGLCREGQLEEALGRLEMMTEEGLTPDVITYNTLIDASCKAGNVAKAFVLMDEMVRSGL 451

Query: 646 QPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMR-MLCEEVS 685
           + D  T + +         +  A E L+    R  + +EVS
Sbjct: 452 KMDTFTLNTLLYNLCKEKRYEEAEELLRAPPQRGFVPDEVS 492



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 81/371 (21%), Positives = 147/371 (39%), Gaps = 37/371 (9%)

Query: 321 SLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL-SVECSKALEL 379
           +L L P+ +T++  +    S   L + +  L  MQ   L P   T  TL +  C K + L
Sbjct: 202 ALRLHPNHYTFNLLVHTHCSKGTLADALSTLSKMQGFGLSPDAVTYNTLLNAHCRKGM-L 260

Query: 380 DLAEALLDQISR---CTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELL 435
             A  LL ++ +         ++  ++A   +   ++A  +   M      PD+ TY +L
Sbjct: 261 GEARTLLARMKKEGIVPTRATYNTLVSAYARLGWIKQATDVVEAMTAFGFEPDLWTYNVL 320

Query: 436 FSLF---GNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNI--------QHSHISMKNLL 484
            +     G V+        F   D  +++  +  D+   N         Q S  ++ NLL
Sbjct: 321 AAGLCQAGKVD------EAFKLKDEMEQLGIVSPDVVTYNTLVDACFKCQRSSDAL-NLL 373

Query: 485 KALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNA 544
           + +  +G+   L+             T+N ++  L    +   A+   + M   G+ P+ 
Sbjct: 374 EEMREKGVKSSLV-------------THNIIVKGLCREGQLEEALGRLEMMTEEGLTPDV 420

Query: 545 ATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDL 604
            TYN +ID          A  L+  MVR G    T T   L+  L     ++EA  LL  
Sbjct: 421 ITYNTLIDASCKAGNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKRYEEAEELLRA 480

Query: 605 VSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGF 664
               G   D + Y T++    ++ + +    + ++M + K+ P  ST + +  G    G 
Sbjct: 481 PPQRGFVPDEVSYGTVMAAYFKEYKPEPALCLWDEMIKRKLTPSISTYNTLIKGLSTMGK 540

Query: 665 HNSAMEALQVL 675
              A++ L  L
Sbjct: 541 LTEAIDKLNEL 551



 Score = 46.2 bits (108), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 70/172 (40%), Gaps = 8/172 (4%)

Query: 513 NTVLHSLVEAQES--HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           N VL +L  +  +    +++ F  +    + PN  T+N+++           A + +S M
Sbjct: 176 NAVLSALARSPSTSPQASLDAFHSLIALRLHPNHYTFNLLVHTHCSKGTLADALSTLSKM 235

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
              G  P  +TY  L+      G   EA  LL  +  EGI      YNT++      G I
Sbjct: 236 QGFGLSPDAVTYNTLLNAHCRKGMLGEARTLLARMKKEGIVPTRATYNTLVSAYARLGWI 295

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSA------MEALQVLS 676
                ++E M     +PD  T + + +G    G  + A      ME L ++S
Sbjct: 296 KQATDVVEAMTAFGFEPDLWTYNVLAAGLCQAGKVDEAFKLKDEMEQLGIVS 347



 Score = 45.4 bits (106), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 80/370 (21%), Positives = 144/370 (38%), Gaps = 40/370 (10%)

Query: 97  CARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYP 156
           C RS D L ++E  R   EK +  +   + ++++ LC+ G LEEA   +  + E  G+ P
Sbjct: 363 CQRSSDALNLLEEMR---EKGVKSSLVTHNIIVKGLCREGQLEEALGRLEMMTEE-GLTP 418

Query: 157 ILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIW 216
            +  YN+ + A  K  ++  A + +D M    +  +  T   LL     +K      E+ 
Sbjct: 419 DVITYNTLIDASCKAGNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKRYEEAEEL- 477

Query: 217 EDYIKHYSLSIFSLRKFVWSFTRLRDLKSAY-ETLQHMVALAMMGKLYINRTSEGRLRSS 275
                   L     R FV        + +AY +  +   AL +  ++ I R    +L  S
Sbjct: 478 --------LRAPPQRGFVPDEVSYGTVMAAYFKEYKPEPALCLWDEM-IKR----KLTPS 524

Query: 276 RLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFI 335
                  +  L  M  L  +   +              +LM     +GL P   TY+  I
Sbjct: 525 ISTYNTLIKGLSTMGKLTEAIDKL-------------NELM----EMGLVPDDTTYNIII 567

Query: 336 RAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLD---QISRC 392
            A   +  L    +    M +N+ KP   T  TL         L+ A  L +   +  + 
Sbjct: 568 HAYCKEGDLEKAFQFHNKMVENSFKPDVVTCNTLMNGLCLYGRLEKAMKLFESWVEKGKK 627

Query: 393 TNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNM 451
            +   ++  + A    +  + A++ FA M  + L+PD+ TY +L S         E   M
Sbjct: 628 VDVITYNTLIQALCKDNDVDTALRFFADMEVRGLQPDVFTYNVLLSALSEAGRSVEAQKM 687

Query: 452 FSQVDSAKRI 461
             +++ + ++
Sbjct: 688 LHKLNESGKL 697


>gi|359477281|ref|XP_003631958.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Vitis vinifera]
          Length = 898

 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 118/551 (21%), Positives = 210/551 (38%), Gaps = 39/551 (7%)

Query: 109 TWRMMEE-KEIGL--NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFL 165
           +W+   E K  GL  ++  Y  M+  LCK   L+EA  L   L +   + P    YN+ +
Sbjct: 284 SWKFFHEMKSHGLMPDDVTYTSMIGVLCKANRLDEAVELFEQLEQNRKV-PCAYAYNTMI 342

Query: 166 GACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSL 225
                      A   L+   ++    + + Y  +L     ++ +     I+E+  +    
Sbjct: 343 MGYGSAGKFDEAYGLLERQKAKGSIPSVIAYNCILTCLGKKRRVEEALRIFEEMKRDAVP 402

Query: 226 SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGK-LYINRTSEGRLRSSRLDIPIPLN 284
           ++ +    +    R   L +A E    M    +    L +N   +   ++ +L+    + 
Sbjct: 403 NVPTYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIF 462

Query: 285 ALPVMKVLR---WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSD 341
                KV      +FS +I   G+      A  L  +M   G  P +  Y   IR+    
Sbjct: 463 EGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKC 522

Query: 342 RGLRNGMEVLKIMQQNNLKPQDSTIATLSVECS-KALELDLAEALLDQISR---CTNPKP 397
               +G ++ K M      P D T+    ++C  KA E +   AL  +I+      + + 
Sbjct: 523 GRKEDGHKIYKEMVHTGCSP-DLTLINTYMDCVFKAGETEKGRALFREINAHGFIPDARS 581

Query: 398 FSAFLAACDTMDKPERAIKIFAKMR-QKLRPDIRTYELLFSLF---GNVNAPYE------ 447
           +S  +             ++F  M+ Q    D   Y  +   F   G VN  Y+      
Sbjct: 582 YSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMK 641

Query: 448 ----------EGNMFSQVDSAKRINAIEM---DMARNNIQHSHISMKNLLKALGAEGMIR 494
                      G++   +    R++   M   +   N I+ + +   +L+   G  G I 
Sbjct: 642 VKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRID 701

Query: 495 E---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI 551
           E   +++            T+N +L +LV+A+E + A+  F+ MK    PPN  TY+I+I
Sbjct: 702 EAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSILI 761

Query: 552 DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIP 611
           +    +R F  A      M + G  P T+TYT +I  L   G+  EA  L       G  
Sbjct: 762 NGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNILEASGLFSRFKANGGI 821

Query: 612 HDVLLYNTILK 622
            D   YN +++
Sbjct: 822 PDSASYNAMIE 832



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 81/368 (22%), Positives = 163/368 (44%), Gaps = 25/368 (6%)

Query: 315 LMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVEC- 373
           L  QMQ LG + + H +   IR    +  +   + +L  M+ N+L   D  +  + ++C 
Sbjct: 217 LFHQMQELGYEVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLD-ADIVLYNVCIDCF 275

Query: 374 SKALELDLAEALLDQI-SRCTNPK--PFSAFLAACDTMDKPERAIKIFAKMRQKLR-PDI 429
            KA ++D++     ++ S    P    +++ +      ++ + A+++F ++ Q  + P  
Sbjct: 276 GKAGKVDMSWKFFHEMKSHGLMPDDVTYTSMIGVLCKANRLDEAVELFEQLEQNRKVPCA 335

Query: 430 RTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGA 489
             Y  +   +G+            + D A  +  +E   A+ +I  S I+   +L  LG 
Sbjct: 336 YAYNTMIMGYGSA----------GKFDEAYGL--LERQKAKGSIP-SVIAYNCILTCLGK 382

Query: 490 EGMIRELIQYFCDSKTPL--GTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATY 547
           +  + E ++ F + K       PTYN ++  L    + + A+EI   M+  G+ PN  T 
Sbjct: 383 KRRVEEALRIFEEMKRDAVPNVPTYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTV 442

Query: 548 NIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSL 607
           NIMID     +  + A ++   M      P  +T+++LI  L   G  D+A +L + +  
Sbjct: 443 NIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLD 502

Query: 608 EGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNS 667
            G     ++Y ++++   + GR +    I ++M      PD +    + + Y++C F   
Sbjct: 503 CGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLT----LINTYMDCVFKAG 558

Query: 668 AMEALQVL 675
             E  + L
Sbjct: 559 ETEKGRAL 566



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 115/585 (19%), Positives = 235/585 (40%), Gaps = 60/585 (10%)

Query: 99  RSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPIL 158
           R PDP+ ++  +  M+E    +N   +  +++   + G ++ A +L+  + +   +   +
Sbjct: 209 REPDPMLIL--FHQMQELGYEVNVHLFTTLIRVFAREGRVDAALSLLDEM-KSNSLDADI 265

Query: 159 PVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWED 218
            +YN  +    K   +  +      M S  +  ++VTYT ++ +      L    E++E 
Sbjct: 266 VLYNVCIDCFGKAGKVDMSWKFFHEMKSHGLMPDDVTYTSMIGVLCKANRLDEAVELFEQ 325

Query: 219 YIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLD 278
             ++                  R +  AY     ++     GK      + G L   +  
Sbjct: 326 LEQN------------------RKVPCAYAYNTMIMGYGSAGKF---DEAYGLLERQKAK 364

Query: 279 IPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAI 338
             IP        V+  +++ ++   G+ +    A ++  +M+   + P+  TY+  I  +
Sbjct: 365 GSIP-------SVI--AYNCILTCLGKKRRVEEALRIFEEMKRDAV-PNVPTYNILIDML 414

Query: 339 VSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLA----EALLDQISRCT- 393
             +  L   +E+   M++  L P   T+  +     KA +L+ A    E + D++  CT 
Sbjct: 415 CREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKV--CTP 472

Query: 394 NPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMF 452
           N   FS+ +       + + A  ++ KM      P    Y  L   F       +   ++
Sbjct: 473 NAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIY 532

Query: 453 SQ-VDSAKRINAIEMDMARNNIQHSHISMKN--LLKALGAEGMIRELIQYFCDSKTPLGT 509
            + V +    +   ++   + +  +  + K   L + + A G I +              
Sbjct: 533 KEMVHTGCSPDLTLINTYMDCVFKAGETEKGRALFREINAHGFIPD-------------A 579

Query: 510 PTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC-CSIIRCFKSASALVS 568
            +Y+ ++H LV+A  ++   E+F  MK  G   +   YN +ID  C   +  K+   L  
Sbjct: 580 RSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEE 639

Query: 569 MMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
           M V+ G  P  +TY ++I  L      DEA  L +     GI  +V++Y++++    + G
Sbjct: 640 MKVK-GHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVG 698

Query: 629 RIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           RID    I+E++ Q  + P+  T + +    V     N A+   Q
Sbjct: 699 RIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQ 743



 Score = 62.4 bits (150), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 106/522 (20%), Positives = 196/522 (37%), Gaps = 71/522 (13%)

Query: 106 VMETWRMMEE--KEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNS 163
           V E  R+ EE  ++   N   Y +++  LC+ G L  A  +   + ER G++P +   N 
Sbjct: 386 VEEALRIFEEMKRDAVPNVPTYNILIDMLCREGKLNAALEIRDDM-ERAGLFPNVLTVNI 444

Query: 164 FLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK-- 221
            +    K   +  A    + MD ++   N VT++ L+        +   + ++E  +   
Sbjct: 445 MIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCG 504

Query: 222 HYSLSIF--SLRKFVWSFTRLRDLKSAYETLQH--------MVALAMMGKLYINRTSEGR 271
           H   +I   SL +  +   R  D    Y+ + H        ++   M        T +GR
Sbjct: 505 HVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKGR 564

Query: 272 LRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTY 331
                +      NA   +   R S+S +IH   +   +    +L   M+  G    +H Y
Sbjct: 565 ALFREI------NAHGFIPDAR-SYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAY 617

Query: 332 DGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR 391
           +  I        +    ++L+ M+     P   T  ++    +K   LD A  L ++   
Sbjct: 618 NAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKS 677

Query: 392 CT---NPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYE 447
                N   +S+ +     + + + A  I  ++ QK L P++ T+  L            
Sbjct: 678 NGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDAL-------- 729

Query: 448 EGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPL 507
                        + A E++ A    Q    SMK+L                    K P 
Sbjct: 730 -------------VKAEEINEALICFQ----SMKDL--------------------KCPP 752

Query: 508 GTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALV 567
              TY+ +++ L   ++ ++A   +++M+  G+ PN  TY  MI   +       AS L 
Sbjct: 753 NQITYSILINGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNILEASGLF 812

Query: 568 SMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEG 609
           S    +G  P + +Y A+I+ L       +A  L +   L+G
Sbjct: 813 SRFKANGGIPDSASYNAMIEGLSSANKAMDAYALFEETRLKG 854



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 60/132 (45%)

Query: 520 VEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQT 579
           V++++   A +I + M+     P  + Y I+I   S +R       L   M   G+    
Sbjct: 171 VKSRKLREAFDIIQTMRKFKFRPAFSAYTILIGALSEVREPDPMLILFHQMQELGYEVNV 230

Query: 580 MTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQ 639
             +T LI++    G  D AL+LLD +    +  D++LYN  +    + G++D+      +
Sbjct: 231 HLFTTLIRVFAREGRVDAALSLLDEMKSNSLDADIVLYNVCIDCFGKAGKVDMSWKFFHE 290

Query: 640 MHQNKVQPDPST 651
           M  + + PD  T
Sbjct: 291 MKSHGLMPDDVT 302



 Score = 44.7 bits (104), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 32/138 (23%), Positives = 60/138 (43%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
            YN++L  +    E      I ++M   G  P++     ++  C   R  + A  ++  M
Sbjct: 127 AYNSLLMVMARNTEFDHLERILEEMSLSGFGPSSNISIELVANCVKSRKLREAFDIIQTM 186

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
            +  F P    YT LI  L +  + D  L L   +   G   +V L+ T+++    +GR+
Sbjct: 187 RKFKFRPAFSAYTILIGALSEVREPDPMLILFHQMQELGYEVNVHLFTTLIRVFAREGRV 246

Query: 631 DVIEFIIEQMHQNKVQPD 648
           D    ++++M  N +  D
Sbjct: 247 DAALSLLDEMKSNSLDAD 264


>gi|223635621|sp|Q940A6.2|PP325_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g19440, chloroplastic; Flags: Precursor
          Length = 838

 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 120/566 (21%), Positives = 219/566 (38%), Gaps = 77/566 (13%)

Query: 119 GLNNKCYLLM--MQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSF---LGACAKLHS 173
           G++   YL    + A CKGG +EEA  L   + E  G+ P +  +N+    LG C +   
Sbjct: 268 GVSPDVYLFTTAINAFCKGGKVEEAVKLFSKM-EEAGVAPNVVTFNTVIDGLGMCGRYD- 325

Query: 174 MVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKF 233
              A +  + M  R +    +TY+ L+K                                
Sbjct: 326 --EAFMFKEKMVERGMEPTLITYSILVK-------------------------------- 351

Query: 234 VWSFTRLRDLKSAYETLQHMVALAMMGKLYI-NRTSEGRLRSSRLDIPIPLNALPVMKVL 292
               TR + +  AY  L+ M        + + N   +  + +  L+  I +  L V K L
Sbjct: 352 --GLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGL 409

Query: 293 RWS---FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGME 349
             +   ++ +I    +   +  AE+L+ +M S+G   +  ++   I  + S     + + 
Sbjct: 410 SLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALR 469

Query: 350 VLKIMQQNNLKPQDSTIATL-SVEC-----SKALELDLAEALLDQISRCTNPKPFSAFLA 403
            +  M   N+ P    + TL S  C     SKALEL      L++     + +  +A L 
Sbjct: 470 FVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQ--FLNK-GFVVDTRTSNALLH 526

Query: 404 ACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINA 463
                 K + A +I  ++  +               G V        + S     K+++ 
Sbjct: 527 GLCEAGKLDEAFRIQKEILGR---------------GCVMDRVSYNTLISGCCGKKKLDE 571

Query: 464 IEM---DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLH 517
             M   +M +  ++  + +   L+  L     + E IQ++ D K     P   TY+ ++ 
Sbjct: 572 AFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMID 631

Query: 518 SLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYP 577
              +A+ +    E F +M +  + PN   YN +I           A  L   M   G  P
Sbjct: 632 GCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISP 691

Query: 578 QTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFII 637
            + TYT+LIK +      +EA  L + + +EG+  +V  Y  ++    + G++  +E ++
Sbjct: 692 NSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLL 751

Query: 638 EQMHQNKVQPDPSTCHFVFSGYVNCG 663
            +MH   V P+  T   +  GY   G
Sbjct: 752 REMHSKNVHPNKITYTVMIGGYARDG 777



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 88/385 (22%), Positives = 154/385 (40%), Gaps = 33/385 (8%)

Query: 298 DVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQN 357
           D +  CGR   + + ++ M++    G++P+  TY   ++ +   + + +   VLK M + 
Sbjct: 316 DGLGMCGRYDEAFMFKEKMVER---GMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKK 372

Query: 358 NLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKI 417
              P       L     +A  L+ A  + D +      K  S   +  +T+      IK 
Sbjct: 373 GFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMV----SKGLSLTSSTYNTL------IKG 422

Query: 418 FAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQV---------DSAKRINAIEMDM 468
           + K  Q    + R  + + S+  NVN    +G+  S +         DSA R      +M
Sbjct: 423 YCKNGQADNAE-RLLKEMLSIGFNVN----QGSFTSVICLLCSHLMFDSALRFVG---EM 474

Query: 469 ARNNIQHSHISMKNLLKAL---GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQES 525
              N+      +  L+  L   G      EL   F +    + T T N +LH L EA + 
Sbjct: 475 LLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKL 534

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
             A  I K++   G   +  +YN +I  C   +    A   +  MV+ G  P   TY+ L
Sbjct: 535 DEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSIL 594

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           I  L +    +EA+   D     G+  DV  Y+ ++   C+  R +  +   ++M    V
Sbjct: 595 ICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNV 654

Query: 646 QPDPSTCHFVFSGYVNCGFHNSAME 670
           QP+    + +   Y   G  + A+E
Sbjct: 655 QPNTVVYNHLIRAYCRSGRLSMALE 679



 Score = 65.9 bits (159), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 77/162 (47%)

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           + T +++  +  +   A+++F +M+  G+ PN  T+N +ID   +   +  A      MV
Sbjct: 276 FTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMV 335

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
             G  P  +TY+ L+K L       +A  +L  ++ +G P +V++YN ++    E G ++
Sbjct: 336 ERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLN 395

Query: 632 VIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
               I + M    +    ST + +  GY   G  ++A   L+
Sbjct: 396 KAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLK 437



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 129/290 (44%), Gaps = 21/290 (7%)

Query: 347 GMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPF---SAFLA 403
            ++V  ++    + P  +T   L     +A E        D + +  +P  +   +A  A
Sbjct: 223 ALDVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCEAFDVVCKGVSPDVYLFTTAINA 282

Query: 404 ACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRIN 462
            C    K E A+K+F+KM +  + P++ T+  +    G +   Y+E  MF +        
Sbjct: 283 FCKG-GKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLG-MCGRYDEAFMFKE-------K 333

Query: 463 AIEMDMARNNIQHSHISMKNLLKA--LG-AEGMIRELIQYFCDSKTPLGTPTYNTVLHSL 519
            +E  M    I +S I +K L +A  +G A  +++E+ +       P     YN ++ S 
Sbjct: 334 MVERGMEPTLITYS-ILVKGLTRAKRIGDAYFVLKEMTK----KGFPPNVIVYNNLIDSF 388

Query: 520 VEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQT 579
           +EA   ++A+EI   M + G+   ++TYN +I          +A  L+  M+  GF    
Sbjct: 389 IEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQ 448

Query: 580 MTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
            ++T++I +L  +  FD AL  +  + L  +     L  T++   C+ G+
Sbjct: 449 GSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGK 498



 Score = 44.7 bits (104), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 24/100 (24%), Positives = 47/100 (47%), Gaps = 1/100 (1%)

Query: 569 MMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
           ++   G +P   T   L+  L+   +F +     D+V  +G+  DV L+ T +   C+ G
Sbjct: 229 VLANKGMFPSKTTCNILLTSLVRANEFQKCCEAFDVVC-KGVSPDVYLFTTAINAFCKGG 287

Query: 629 RIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSA 668
           +++    +  +M +  V P+  T + V  G   CG ++ A
Sbjct: 288 KVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEA 327



 Score = 41.6 bits (96), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 30/133 (22%), Positives = 59/133 (44%), Gaps = 5/133 (3%)

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRC--FKSASALVSMMVRDGFYPQTMTYTAL 585
           A+++F  +   G+ P+  T NI++   S++R   F+       ++ + G  P    +T  
Sbjct: 223 ALDVFPVLANKGMFPSKTTCNILLT--SLVRANEFQKCCEAFDVVCK-GVSPDVYLFTTA 279

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           I      G  +EA+ L   +   G+  +V+ +NT++      GR D      E+M +  +
Sbjct: 280 INAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGM 339

Query: 646 QPDPSTCHFVFSG 658
           +P   T   +  G
Sbjct: 340 EPTLITYSILVKG 352


>gi|42572723|ref|NP_974457.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332646343|gb|AEE79864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 590

 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 80/388 (20%), Positives = 150/388 (38%), Gaps = 60/388 (15%)

Query: 294 WSFSDV-----IHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGM 348
           W+FS++     I A G+  N   AE+++  +  +G  P+  +Y   + +        N  
Sbjct: 142 WNFSEIDFLMLITAYGKLGNFNGAERVLSVLSKMGSTPNVISYTALMESYGRGGKCNNAE 201

Query: 349 EVLKIMQQNNLKPQDST---IATLSVECSKALELD-LAEALLDQISRCTNP--KPFSAFL 402
            + + MQ +  +P   T   I    VE  K  E + + E LLD+      P  K +   +
Sbjct: 202 AIFRRMQSSGPEPSAITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMI 261

Query: 403 AACDTMDKPERAIKIFAKMRQKLRPD-IRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI 461
                    E+A K+F+ M  K  P    TY  L S                   S K +
Sbjct: 262 YMYKKAGNYEKARKVFSSMVGKGVPQSTVTYNSLMSF----------------ETSYKEV 305

Query: 462 NAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVE 521
           + I   M R++IQ   +S   L+KA G                                 
Sbjct: 306 SKIYDQMQRSDIQPDVVSYALLIKAYG--------------------------------R 333

Query: 522 AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMT 581
           A+    A+ +F++M   G+ P    YNI++D  +I    + A  +   M RD  +P   +
Sbjct: 334 ARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWS 393

Query: 582 YTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMH 641
           YT ++   ++  D + A      + ++G   +++ Y T++K   +   ++ +  + E+M 
Sbjct: 394 YTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGTLIKGYAKANDVEKMMEVYEKMR 453

Query: 642 QNKVQPDPSTCHFVFSGYVNCGFHNSAM 669
            + ++ + +    +      C    SA+
Sbjct: 454 LSGIKANQTILTTIMDASGRCKNFGSAL 481



 Score = 70.9 bits (172), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 71/344 (20%), Positives = 134/344 (38%), Gaps = 20/344 (5%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           S++ ++ + GR      AE +  +MQS G +PS+ TY   ++  V     +   EV + +
Sbjct: 183 SYTALMESYGRGGKCNNAEAIFRRMQSSGPEPSAITYQIILKTFVEGDKFKEAEEVFETL 242

Query: 355 ---QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKP 411
              +++ LKP       +     KA   + A  +   +     P+    + +        
Sbjct: 243 LDEKKSPLKPDQKMYHMMIYMYKKAGNYEKARKVFSSMVGKGVPQSTVTYNSLMSFETSY 302

Query: 412 ERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           +   KI+ +M R  ++PD+ +Y LL   +G      E  ++F ++  A            
Sbjct: 303 KEVSKIYDQMQRSDIQPDVVSYALLIKAYGRARREEEALSVFEEMLDA------------ 350

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHR 527
             ++ +H +   LL A    GM+ +    F   +     P   +Y T+L + V A +   
Sbjct: 351 -GVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEG 409

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A + FK++K  G  PN  TY  +I   +     +    +   M   G        T ++ 
Sbjct: 410 AEKFFKRIKVDGFEPNIVTYGTLIKGYAKANDVEKMMEVYEKMRLSGIKANQTILTTIMD 469

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
                 +F  AL     +   G+P D    N +L  A  +  ++
Sbjct: 470 ASGRCKNFGSALGWYKEMESCGVPPDQKAKNVLLSLASTQDELE 513


>gi|449521772|ref|XP_004167903.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Cucumis sativus]
          Length = 645

 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 82/361 (22%), Positives = 148/361 (40%), Gaps = 35/361 (9%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +F  +I  C R  +   A+++  +M+  G+ P+   Y   IR + SD  +     + + M
Sbjct: 184 TFGTLIDGCCRQGDLLRAQEMFDEMRVKGIVPTVIVYTILIRGLCSDNKIEEAESMHRAM 243

Query: 355 QQNNLKPQDSTIATLS------VECSKALELD---LAEALLDQISRCTNPKPFSAFLAAC 405
           ++  + P   T  TL           +AL L    L E L+  +        F   +   
Sbjct: 244 REVGVYPNVYTYNTLMDGYCKLANAKQALRLYQDMLGEGLVPDVVT------FGILIDGL 297

Query: 406 DTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAI 464
               + + A  +F  M +  + P+I  Y  L              + + +V       A+
Sbjct: 298 CKFGEMKAARNLFVNMIKFSVTPNIAVYNSLI-------------DAYCKVGDVSEAMAL 344

Query: 465 EMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLG----TPTYNTVLHSLV 520
            +++ R  +     +   L++ L +     E    F +  T  G    + TYN+++    
Sbjct: 345 FLELERFEVSPDVFTYSILIRGLCSVSRTEEAGNIF-EKMTKEGILANSVTYNSLIDGCC 403

Query: 521 EAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTM 580
           +  +  +A+EI  QM   G+ PN  T++ +ID    IR  ++A  + S MV     P  +
Sbjct: 404 KEGKMDKALEICSQMTENGVEPNVITFSTLIDGYCKIRNLQAAMGIYSEMVIKSLSPDVV 463

Query: 581 TYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI-DVIEFIIEQ 639
           TYTA+I     YG   EAL L   +   GI  +    + +L   C+ G+I D +E   E+
Sbjct: 464 TYTAMIDGHCKYGSMKEALKLYSDMLDNGITPNCYTISCLLDGLCKDGKISDALELFTEK 523

Query: 640 M 640
           +
Sbjct: 524 I 524



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 68/296 (22%), Positives = 123/296 (41%), Gaps = 23/296 (7%)

Query: 398 FSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVD 456
           F   +  C       RA ++F +MR K + P +  Y +L     + N   E  +M     
Sbjct: 185 FGTLIDGCCRQGDLLRAQEMFDEMRVKGIVPTVIVYTILIRGLCSDNKIEEAESMHR--- 241

Query: 457 SAKRINAIEMDMARNNIQHSHISMKNLLKALG------AEGMIRELIQYFCDSKTPLGTP 510
           + + +         N +   +  + N  +AL        EG++ +++             
Sbjct: 242 AMREVGVYPNVYTYNTLMDGYCKLANAKQALRLYQDMLGEGLVPDVV------------- 288

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           T+  ++  L +  E   A  +F  M    + PN A YN +ID    +     A AL   +
Sbjct: 289 TFGILIDGLCKFGEMKAARNLFVNMIKFSVTPNIAVYNSLIDAYCKVGDVSEAMALFLEL 348

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
            R    P   TY+ LI+ L      +EA N+ + ++ EGI  + + YN+++   C++G++
Sbjct: 349 ERFEVSPDVFTYSILIRGLCSVSRTEEAGNIFEKMTKEGILANSVTYNSLIDGCCKEGKM 408

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           D    I  QM +N V+P+  T   +  GY       +AM     + ++ L  +V T
Sbjct: 409 DKALEICSQMTENGVEPNVITFSTLIDGYCKIRNLQAAMGIYSEMVIKSLSPDVVT 464



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 82/435 (18%), Positives = 171/435 (39%), Gaps = 60/435 (13%)

Query: 153 GIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAV 212
           G+ P +  + + +  C +   ++ A    D M  + +    + YT L+      + L + 
Sbjct: 177 GLSPSVITFGTLIDGCCRQGDLLRAQEMFDEMRVKGIVPTVIVYTILI------RGLCSD 230

Query: 213 HEIWEDYIKHYSL-------SIFSLRKFVWSFTRLRDLKSAYETLQHMVA------LAMM 259
           ++I E    H ++       ++++    +  + +L + K A    Q M+       +   
Sbjct: 231 NKIEEAESMHRAMREVGVYPNVYTYNTLMDGYCKLANAKQALRLYQDMLGEGLVPDVVTF 290

Query: 260 GKLYINRTSEGRLRSSR--LDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLML 317
           G L       G ++++R      I  +  P + V    ++ +I A  +  +   A  L L
Sbjct: 291 GILIDGLCKFGEMKAARNLFVNMIKFSVTPNIAV----YNSLIDAYCKVGDVSEAMALFL 346

Query: 318 QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKAL 377
           +++   + P   TY   IR + S         + + M +  +     T  +L   C K  
Sbjct: 347 ELERFEVSPDVFTYSILIRGLCSVSRTEEAGNIFEKMTKEGILANSVTYNSLIDGCCKEG 406

Query: 378 ELDLAEALLDQISRC---TNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYE 433
           ++D A  +  Q++      N   FS  +     +   + A+ I+++M  K L PD+ TY 
Sbjct: 407 KMDKALEICSQMTENGVEPNVITFSTLIDGYCKIRNLQAAMGIYSEMVIKSLSPDVVTYT 466

Query: 434 LLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMI 493
            +      ++   + G+M       K    +  DM  N I  +  ++  LL  L  +G I
Sbjct: 467 AM------IDGHCKYGSM-------KEALKLYSDMLDNGITPNCYTISCLLDGLCKDGKI 513

Query: 494 RELIQYFCDSKTPLGTP-----------------TYNTVLHSLVEAQESHRAMEIFKQMK 536
            + ++ F + K    TP                  Y  ++H L +  +  +A+++F  M+
Sbjct: 514 SDALELFTE-KIEFQTPRCNVDAGGSKPSLTNHVAYTALIHGLCQDGQFSKAVKLFSDMR 572

Query: 537 TCGIPPNAATYNIMI 551
             G+ P+   Y +M+
Sbjct: 573 RYGLQPDEVIYVVML 587



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 86/418 (20%), Positives = 157/418 (37%), Gaps = 82/418 (19%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           AE +   M+ +G+ P+ +TY+  +         +  + + + M    L P   T   L  
Sbjct: 236 AESMHRAMREVGVYPNVYTYNTLMDGYCKLANAKQALRLYQDMLGEGLVPDVVTFGILID 295

Query: 372 ECSKALELDLAEAL---LDQISRCTNPKPFSAFL-AACDTMDKPERAIKIFAKM-RQKLR 426
              K  E+  A  L   + + S   N   +++ + A C   D  E A+ +F ++ R ++ 
Sbjct: 296 GLCKFGEMKAARNLFVNMIKFSVTPNIAVYNSLIDAYCKVGDVSE-AMALFLELERFEVS 354

Query: 427 PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKA 486
           PD+ TY +L     +V+   E GN+F +             M +  I  + ++  +L+  
Sbjct: 355 PDVFTYSILIRGLCSVSRTEEAGNIFEK-------------MTKEGILANSVTYNSLIDG 401

Query: 487 LGAEGMIRELIQYFCDSKTPLGTP----TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPP 542
              EG + + ++  C   T  G      T++T++    + +    AM I+ +M    + P
Sbjct: 402 CCKEGKMDKALE-ICSQMTENGVEPNVITFSTLIDGYCKIRNLQAAMGIYSEMVIKSLSP 460

Query: 543 NAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMT--------------------- 581
           +  TY  MID        K A  L S M+ +G  P   T                     
Sbjct: 461 DVVTYTAMIDGHCKYGSMKEALKLYSDMLDNGITPNCYTISCLLDGLCKDGKISDALELF 520

Query: 582 ---------------------------YTALIKILLDYGDFDEALNLLDLVSLEGIPHDV 614
                                      YTALI  L   G F +A+ L   +   G+  D 
Sbjct: 521 TEKIEFQTPRCNVDAGGSKPSLTNHVAYTALIHGLCQDGQFSKAVKLFSDMRRYGLQPDE 580

Query: 615 LLYNTILKKACEKGRIDVIEFIIEQMHQN----KVQPDPSTCHFVFSGYVNCGFHNSA 668
           ++Y  +L+   +      +++I+  +H +     V P+ +    +   Y   GF  SA
Sbjct: 581 VIYVVMLRGLFQ------VKYILMMLHADMLKFGVIPNSAVHVILCECYQESGFLKSA 632



 Score = 46.6 bits (109), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 39/178 (21%), Positives = 73/178 (41%), Gaps = 2/178 (1%)

Query: 492 MIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI 551
           ++ E +  +      L     N +L+ LV+         I+++M + G+ P+  T+  +I
Sbjct: 130 LVEEALSMYHKVGAALTIQACNVLLYVLVKTGRFELLWRIYEEMISNGLSPSVITFGTLI 189

Query: 552 D-CCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGI 610
           D CC      ++      M V+ G  P  + YT LI+ L      +EA ++   +   G+
Sbjct: 190 DGCCRQGDLLRAQEMFDEMRVK-GIVPTVIVYTILIRGLCSDNKIEEAESMHRAMREVGV 248

Query: 611 PHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSA 668
             +V  YNT++   C+         + + M    + PD  T   +  G    G   +A
Sbjct: 249 YPNVYTYNTLMDGYCKLANAKQALRLYQDMLGEGLVPDVVTFGILIDGLCKFGEMKAA 306



 Score = 43.9 bits (102), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 3/105 (2%)

Query: 570 MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
           M+ +G  P  +T+  LI      GD   A  + D + ++GI   V++Y  +++  C   +
Sbjct: 173 MISNGLSPSVITFGTLIDGCCRQGDLLRAQEMFDEMRVKGIVPTVIVYTILIRGLCSDNK 232

Query: 630 IDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQV 674
           I+  E +   M +  V P+  T + +  GY  C   N A +AL++
Sbjct: 233 IEEAESMHRAMREVGVYPNVYTYNTLMDGY--CKLAN-AKQALRL 274


>gi|414586743|tpg|DAA37314.1| TPA: hypothetical protein ZEAMMB73_981845 [Zea mays]
          Length = 524

 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 81/388 (20%), Positives = 162/388 (41%), Gaps = 32/388 (8%)

Query: 277 LDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIR 336
           L +PIP+ +L              H    +  S  A  L   +  L L   + T++  +R
Sbjct: 79  LSVPIPVASL--------------HPLLSSLPSAPAFALFADIYRLRLPLCTTTFNIMLR 124

Query: 337 AIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPK 396
            + +       +E+L+ M + N    ++ IA           L++   + ++     +  
Sbjct: 125 HLCATGKPVRALELLRQMPRPNAVTYNTVIAGFCARGRVQAALEVMREMRERGGIAPDKY 184

Query: 397 PFSAFLAACDTMDKPERAIKIFAKMRQK--LRPDIRTYELLFSLFGNVNAPYEEGNMFSQ 454
            ++  ++    + + E A+K+F +M  K  + P    Y  L   + +V           +
Sbjct: 185 TYATLISGWCKIGRMEDAVKVFDEMLTKGEVAPSAVMYNALIGGYCDVG----------K 234

Query: 455 VDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---T 511
           +D A +      DM +  I  +  +   L+ AL  +    +      + +    +P   T
Sbjct: 235 LDVALQYRE---DMVQRGIAMTVATYNLLMHALFMDARASDAYAVLEEMQKNGFSPDVFT 291

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           YN +++   +     +A+E+F++M   G+   A TY  +I   S     +    L ++ V
Sbjct: 292 YNILINGYCKEGNEKKALEVFEEMSQKGVRATAVTYTSLIYVFSRKGQVQETDRLFNVAV 351

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
           + G  P  + Y ALI      GD + A  ++  +  + IP D + YNT+++  C  GR+D
Sbjct: 352 KKGIRPDVVMYNALINSHCTGGDMERAYEIMAEMEKKRIPPDDMTYNTLMRGFCLLGRLD 411

Query: 632 VIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
               +I++M +  +QPD  + + + SGY
Sbjct: 412 EARTLIDEMTKRGIQPDLVSYNTLISGY 439



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 65/299 (21%), Positives = 129/299 (43%), Gaps = 18/299 (6%)

Query: 385 LLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK--LRPDIRTYELLFSLFGNV 442
           LL Q+ R  N   ++  +A      + + A+++  +MR++  + PD  TY  L S +  +
Sbjct: 138 LLRQMPR-PNAVTYNTVIAGFCARGRVQAALEVMREMRERGGIAPDKYTYATLISGWCKI 196

Query: 443 NAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCD 502
               +   +F ++            + +  +  S +    L+      G +   +QY  D
Sbjct: 197 GRMEDAVKVFDEM------------LTKGEVAPSAVMYNALIGGYCDVGKLDVALQYRED 244

Query: 503 ---SKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRC 559
                  +   TYN ++H+L     +  A  + ++M+  G  P+  TYNI+I+       
Sbjct: 245 MVQRGIAMTVATYNLLMHALFMDARASDAYAVLEEMQKNGFSPDVFTYNILINGYCKEGN 304

Query: 560 FKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNT 619
            K A  +   M + G     +TYT+LI +    G   E   L ++   +GI  DV++YN 
Sbjct: 305 EKKALEVFEEMSQKGVRATAVTYTSLIYVFSRKGQVQETDRLFNVAVKKGIRPDVVMYNA 364

Query: 620 ILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678
           ++   C  G ++    I+ +M + ++ PD  T + +  G+   G  + A   +  ++ R
Sbjct: 365 LINSHCTGGDMERAYEIMAEMEKKRIPPDDMTYNTLMRGFCLLGRLDEARTLIDEMTKR 423



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 94/213 (44%), Gaps = 13/213 (6%)

Query: 412 ERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFS-QVDSAKRINAIEMDMA 469
           ++A+++F +M QK +R    TY  L  +F       E   +F+  V    R + +     
Sbjct: 306 KKALEVFEEMSQKGVRATAVTYTSLIYVFSRKGQVQETDRLFNVAVKKGIRPDVV----M 361

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAM 529
            N + +SH +  ++ +A        E++      + P    TYNT++           A 
Sbjct: 362 YNALINSHCTGGDMERAY-------EIMAEMEKKRIPPDDMTYNTLMRGFCLLGRLDEAR 414

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
            +  +M   GI P+  +YN +I   S+    K A  +   M+  GF P  MTY ALI+ L
Sbjct: 415 TLIDEMTKRGIQPDLVSYNTLISGYSMKGDIKDALRVRDEMMDKGFNPTLMTYNALIQGL 474

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILK 622
                 D+A NL+  +  +GI  D   Y ++++
Sbjct: 475 CKIRQGDDAENLMKEMVAKGITPDDSTYISLIE 507



 Score = 44.7 bits (104), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 80/462 (17%), Positives = 161/462 (34%), Gaps = 110/462 (23%)

Query: 93  ILNYCARSPDPLFVMETWRMMEEKE-IGLNNKCYLLMMQALCKGGYLEEASNLIYFLGER 151
           I  +CAR       +E  R M E+  I  +   Y  ++   CK G +E+A  +   +  +
Sbjct: 154 IAGFCARG-RVQAALEVMREMRERGGIAPDKYTYATLISGWCKIGRMEDAVKVFDEMLTK 212

Query: 152 YGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSA 211
             + P   +YN+ +G    +  +  A    + M  R +     TY  L+         S 
Sbjct: 213 GEVAPSAVMYNALIGGYCDVGKLDVALQYREDMVQRGIAMTVATYNLLMHALFMDARASD 272

Query: 212 VHEIWEDYIKH-YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEG 270
            + + E+  K+ +S  +F+    +  + +  + K A E  + M              S+ 
Sbjct: 273 AYAVLEEMQKNGFSPDVFTYNILINGYCKEGNEKKALEVFEEM--------------SQK 318

Query: 271 RLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHT 330
            +R++ +                 +++ +I+   R       ++L       G++P    
Sbjct: 319 GVRATAV-----------------TYTSLIYVFSRKGQVQETDRLFNVAVKKGIRPDVVM 361

Query: 331 YDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQIS 390
           Y+  I +  +   +    E++  M++  + P D T  TL         LD A  L+D+++
Sbjct: 362 YNALINSHCTGGDMERAYEIMAEMEKKRIPPDDMTYNTLMRGFCLLGRLDEARTLIDEMT 421

Query: 391 RCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGN 450
                                          ++ ++PD+ +Y  L S +          +
Sbjct: 422 -------------------------------KRGIQPDLVSYNTLISGY----------S 440

Query: 451 MFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP 510
           M   +  A R+    MD   N           L+                          
Sbjct: 441 MKGDIKDALRVRDEMMDKGFN---------PTLM-------------------------- 465

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID 552
           TYN ++  L + ++   A  + K+M   GI P+ +TY  +I+
Sbjct: 466 TYNALIQGLCKIRQGDDAENLMKEMVAKGITPDDSTYISLIE 507


>gi|224111544|ref|XP_002315895.1| predicted protein [Populus trichocarpa]
 gi|222864935|gb|EEF02066.1| predicted protein [Populus trichocarpa]
          Length = 424

 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 76/364 (20%), Positives = 165/364 (45%), Gaps = 29/364 (7%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           S+  +I + G+ +   +   L+  M+  GL  +  T+    R     R ++  ++    M
Sbjct: 41  SYHALIESLGKIKQFNVIWNLVTDMKQKGLL-NKETFALISRRYARARKVKEAVDAFMKM 99

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKP 411
           ++  LK + S +  L     K+ +++ A+ + D++++     + K ++  L         
Sbjct: 100 EKFGLKIESSDVNRLLDTLCKSRQVERAQLVFDKMNKRGFVADIKSYTILLEGWGQEKNL 159

Query: 412 ERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM--DM 468
            R ++++ +M+ +   PD+ TY +L      +NA            S +  +AIE+  +M
Sbjct: 160 SRLMEVYNEMKDEGFEPDVVTYGIL------INA---------HCKSRRYDDAIELFHEM 204

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTP---LGTPTYNTVLHSLVEAQES 525
              N + S      L+  LGAE  + E +++F  SK        PTYN V+ +   ++  
Sbjct: 205 EAKNCKPSPHIYCTLINGLGAEKRLSEALEFFELSKASGFVPEAPTYNAVVGAYCWSERM 264

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKS--ASALVSMMVRDGFYPQTMTYT 583
                   +M+  G+ P+A TY+I++    +IR  K+  A ++   M  +G  P   TY 
Sbjct: 265 DDVQRTIDEMRKGGVGPSARTYDIILH--HLIRAGKTKIAYSVFQKMSCEGCQPSVSTYE 322

Query: 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
            ++++  +    D A+ + D +  +GI   + +++T++   C + ++D      ++M   
Sbjct: 323 IIVRMFCNEDRVDMAIKVWDQMKAKGILPVMHMFSTLINSLCHESKLDEACMYFQEMLDV 382

Query: 644 KVQP 647
            ++P
Sbjct: 383 GIRP 386



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 69/178 (38%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           +Y  +L    + +   R ME++ +MK  G  P+  TY I+I+     R +  A  L   M
Sbjct: 145 SYTILLEGWGQEKNLSRLMEVYNEMKDEGFEPDVVTYGILINAHCKSRRYDDAIELFHEM 204

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
                 P    Y  LI  L       EAL   +L    G   +   YN ++   C   R+
Sbjct: 205 EAKNCKPSPHIYCTLINGLGAEKRLSEALEFFELSKASGFVPEAPTYNAVVGAYCWSERM 264

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLE 688
           D ++  I++M +  V P   T   +    +  G    A    Q +S       VST E
Sbjct: 265 DDVQRTIDEMRKGGVGPSARTYDIILHHLIRAGKTKIAYSVFQKMSCEGCQPSVSTYE 322


>gi|18415314|ref|NP_567587.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|334186696|ref|NP_001190771.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|15810161|gb|AAL07224.1| unknown protein [Arabidopsis thaliana]
 gi|332658782|gb|AEE84182.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332658783|gb|AEE84183.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 120/566 (21%), Positives = 219/566 (38%), Gaps = 77/566 (13%)

Query: 119 GLNNKCYLLM--MQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSF---LGACAKLHS 173
           G++   YL    + A CKGG +EEA  L   + E  G+ P +  +N+    LG C +   
Sbjct: 255 GVSPDVYLFTTAINAFCKGGKVEEAVKLFSKM-EEAGVAPNVVTFNTVIDGLGMCGRYD- 312

Query: 174 MVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKF 233
              A +  + M  R +    +TY+ L+K                                
Sbjct: 313 --EAFMFKEKMVERGMEPTLITYSILVK-------------------------------- 338

Query: 234 VWSFTRLRDLKSAYETLQHMVALAMMGKLYI-NRTSEGRLRSSRLDIPIPLNALPVMKVL 292
               TR + +  AY  L+ M        + + N   +  + +  L+  I +  L V K L
Sbjct: 339 --GLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGL 396

Query: 293 RWS---FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGME 349
             +   ++ +I    +   +  AE+L+ +M S+G   +  ++   I  + S     + + 
Sbjct: 397 SLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALR 456

Query: 350 VLKIMQQNNLKPQDSTIATL-SVEC-----SKALELDLAEALLDQISRCTNPKPFSAFLA 403
            +  M   N+ P    + TL S  C     SKALEL      L++     + +  +A L 
Sbjct: 457 FVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQ--FLNK-GFVVDTRTSNALLH 513

Query: 404 ACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINA 463
                 K + A +I  ++  +               G V        + S     K+++ 
Sbjct: 514 GLCEAGKLDEAFRIQKEILGR---------------GCVMDRVSYNTLISGCCGKKKLDE 558

Query: 464 IEM---DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLH 517
             M   +M +  ++  + +   L+  L     + E IQ++ D K     P   TY+ ++ 
Sbjct: 559 AFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMID 618

Query: 518 SLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYP 577
              +A+ +    E F +M +  + PN   YN +I           A  L   M   G  P
Sbjct: 619 GCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISP 678

Query: 578 QTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFII 637
            + TYT+LIK +      +EA  L + + +EG+  +V  Y  ++    + G++  +E ++
Sbjct: 679 NSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLL 738

Query: 638 EQMHQNKVQPDPSTCHFVFSGYVNCG 663
            +MH   V P+  T   +  GY   G
Sbjct: 739 REMHSKNVHPNKITYTVMIGGYARDG 764



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 88/385 (22%), Positives = 154/385 (40%), Gaps = 33/385 (8%)

Query: 298 DVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQN 357
           D +  CGR   + + ++ M++    G++P+  TY   ++ +   + + +   VLK M + 
Sbjct: 303 DGLGMCGRYDEAFMFKEKMVER---GMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKK 359

Query: 358 NLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKI 417
              P       L     +A  L+ A  + D +      K  S   +  +T+      IK 
Sbjct: 360 GFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMV----SKGLSLTSSTYNTL------IKG 409

Query: 418 FAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQV---------DSAKRINAIEMDM 468
           + K  Q    + R  + + S+  NVN    +G+  S +         DSA R      +M
Sbjct: 410 YCKNGQADNAE-RLLKEMLSIGFNVN----QGSFTSVICLLCSHLMFDSALRFVG---EM 461

Query: 469 ARNNIQHSHISMKNLLKAL---GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQES 525
              N+      +  L+  L   G      EL   F +    + T T N +LH L EA + 
Sbjct: 462 LLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKL 521

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
             A  I K++   G   +  +YN +I  C   +    A   +  MV+ G  P   TY+ L
Sbjct: 522 DEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSIL 581

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           I  L +    +EA+   D     G+  DV  Y+ ++   C+  R +  +   ++M    V
Sbjct: 582 ICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNV 641

Query: 646 QPDPSTCHFVFSGYVNCGFHNSAME 670
           QP+    + +   Y   G  + A+E
Sbjct: 642 QPNTVVYNHLIRAYCRSGRLSMALE 666



 Score = 65.9 bits (159), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 77/162 (47%)

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           + T +++  +  +   A+++F +M+  G+ PN  T+N +ID   +   +  A      MV
Sbjct: 263 FTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMV 322

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
             G  P  +TY+ L+K L       +A  +L  ++ +G P +V++YN ++    E G ++
Sbjct: 323 ERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLN 382

Query: 632 VIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
               I + M    +    ST + +  GY   G  ++A   L+
Sbjct: 383 KAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLK 424



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 68/289 (23%), Positives = 129/289 (44%), Gaps = 21/289 (7%)

Query: 348 MEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPF---SAFLAA 404
           ++V  ++    + P  +T   L     +A E        D + +  +P  +   +A  A 
Sbjct: 211 LDVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCEAFDVVCKGVSPDVYLFTTAINAF 270

Query: 405 CDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINA 463
           C    K E A+K+F+KM +  + P++ T+  +    G +   Y+E  MF +         
Sbjct: 271 CKG-GKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLG-MCGRYDEAFMFKE-------KM 321

Query: 464 IEMDMARNNIQHSHISMKNLLKA--LG-AEGMIRELIQYFCDSKTPLGTPTYNTVLHSLV 520
           +E  M    I +S I +K L +A  +G A  +++E+ +       P     YN ++ S +
Sbjct: 322 VERGMEPTLITYS-ILVKGLTRAKRIGDAYFVLKEMTK----KGFPPNVIVYNNLIDSFI 376

Query: 521 EAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTM 580
           EA   ++A+EI   M + G+   ++TYN +I          +A  L+  M+  GF     
Sbjct: 377 EAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQG 436

Query: 581 TYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
           ++T++I +L  +  FD AL  +  + L  +     L  T++   C+ G+
Sbjct: 437 SFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGK 485



 Score = 44.7 bits (104), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 24/100 (24%), Positives = 47/100 (47%), Gaps = 1/100 (1%)

Query: 569 MMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
           ++   G +P   T   L+  L+   +F +     D+V  +G+  DV L+ T +   C+ G
Sbjct: 216 VLANKGMFPSKTTCNILLTSLVRANEFQKCCEAFDVVC-KGVSPDVYLFTTAINAFCKGG 274

Query: 629 RIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSA 668
           +++    +  +M +  V P+  T + V  G   CG ++ A
Sbjct: 275 KVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEA 314



 Score = 41.6 bits (96), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 30/133 (22%), Positives = 59/133 (44%), Gaps = 5/133 (3%)

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRC--FKSASALVSMMVRDGFYPQTMTYTAL 585
           A+++F  +   G+ P+  T NI++   S++R   F+       ++ + G  P    +T  
Sbjct: 210 ALDVFPVLANKGMFPSKTTCNILLT--SLVRANEFQKCCEAFDVVCK-GVSPDVYLFTTA 266

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           I      G  +EA+ L   +   G+  +V+ +NT++      GR D      E+M +  +
Sbjct: 267 INAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGM 326

Query: 646 QPDPSTCHFVFSG 658
           +P   T   +  G
Sbjct: 327 EPTLITYSILVKG 339


>gi|83744086|gb|ABC42329.1| PPR protein [Oryza sativa Indica Group]
          Length = 761

 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 93/402 (23%), Positives = 166/402 (41%), Gaps = 19/402 (4%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           ++S +I A  + Q    A +++  M   G+ P+  TY   +    S    +  +  LK +
Sbjct: 233 TYSSIIAALCKGQAMDKAMEVLTSMVKNGVMPNCRTYTSIMHGYCSSGQPKEAIGFLKKV 292

Query: 355 QQNN-----LKPQDSTIATLSVECSKALELDLAEALLDQISR-CTNPK--PFSAFLAACD 406
           + +      L+P  +T  TL    +    L    ALLD + R   +P    ++  + A  
Sbjct: 293 RSDGVEPDGLEPDIATYCTLLQGYATKGALVGMHALLDLMVRNGIHPDHYVYNILICAYA 352

Query: 407 TMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIE 465
              K + A+ +F+KMRQ+ L PD  TY  +  +        +    F Q+        I+
Sbjct: 353 KQGKVDEAMLVFSKMRQQGLNPDAVTYGAVIGILCKSGRVEDAMLYFEQM--------ID 404

Query: 466 MDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQES 525
             ++  NI ++  S+ + L          ELI    D    L T  +N+++ S  +    
Sbjct: 405 EGLSPGNIVYN--SLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRV 462

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
             + ++F  M   G+ P+  TY+ +ID   +      A  L+S MV  G  P T+TY  L
Sbjct: 463 IESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYRTL 522

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           I          +AL L   +   G+  D++ YN IL+   +  R    + +  ++ ++  
Sbjct: 523 INGYCKISRMGDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGT 582

Query: 646 QPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTL 687
           Q + ST + +  G       + A+   Q L +  L  E  T 
Sbjct: 583 QIELSTYNIILHGLCKNKLTDDALRMFQNLCLMDLKLEARTF 624



 Score = 62.8 bits (151), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 81/183 (44%), Gaps = 8/183 (4%)

Query: 495 ELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI 551
           EL     D +     P   +Y TV++   +  +S +A   + +M    I P+  TY+ +I
Sbjct: 179 ELPHMMADGRGGGSAPDVVSYTTVINGFFKEGDSGKAYSTYHEMLDRRISPDVVTYSSII 238

Query: 552 DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL-----DLVS 606
                 +    A  +++ MV++G  P   TYT+++      G   EA+  L     D V 
Sbjct: 239 AALCKGQAMDKAMEVLTSMVKNGVMPNCRTYTSIMHGYCSSGQPKEAIGFLKKVRSDGVE 298

Query: 607 LEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHN 666
            +G+  D+  Y T+L+    KG +  +  +++ M +N + PD    + +   Y   G  +
Sbjct: 299 PDGLEPDIATYCTLLQGYATKGALVGMHALLDLMVRNGIHPDHYVYNILICAYAKQGKVD 358

Query: 667 SAM 669
            AM
Sbjct: 359 EAM 361



 Score = 52.8 bits (125), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 79/365 (21%), Positives = 143/365 (39%), Gaps = 37/365 (10%)

Query: 300 IHACGRTQNSGLAEQLML--QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQN 357
           I  C   +   + E +++  +M+  GL P + TY   I  +     + + M   + M   
Sbjct: 346 ILICAYAKQGKVDEAMLVFSKMRQQGLNPDAVTYGAVIGILCKSGRVEDAMLYFEQMIDE 405

Query: 358 NLKPQDSTIATLSVECSKALELDLAEAL-LDQISR--CTNPKPFSAFLAACDTMDKPERA 414
            L P +    +L        + + AE L L+ + R  C N   F++ +   D+  K  R 
Sbjct: 406 GLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSII---DSHCKEGRV 462

Query: 415 I---KIFAKM-RQKLRPDIRTYELLFS--------------LFGNVNAPYEEG------- 449
           I   K+F  M R  ++PDI TY  L                L G V+   +         
Sbjct: 463 IESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYRTL 522

Query: 450 -NMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL---GAEGMIRELIQYFCDSKT 505
            N + ++        +  +M  + +    I+   +L+ L         +EL     +S T
Sbjct: 523 INGYCKISRMGDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGT 582

Query: 506 PLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASA 565
            +   TYN +LH L + + +  A+ +F+ +    +   A T+NIMID    +     A  
Sbjct: 583 QIELSTYNIILHGLCKNKLTDDALRMFQNLCLMDLKLEARTFNIMIDALLKVGRNGEAKD 642

Query: 566 LVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKAC 625
           L      +G  P   TY  + + ++  G  +E   L   +   G   D  + N I+++  
Sbjct: 643 LFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELL 702

Query: 626 EKGRI 630
           ++G I
Sbjct: 703 QRGEI 707



 Score = 48.1 bits (113), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 67/332 (20%), Positives = 130/332 (39%), Gaps = 18/332 (5%)

Query: 323 GLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTI-ATLSVECSKALELDL 381
           G+ P  + Y+  I A      +   M V   M+Q  L P   T  A + + C      D 
Sbjct: 336 GIHPDHYVYNILICAYAKQGKVDEAMLVFSKMRQQGLNPDAVTYGAVIGILCKSGRVEDA 395

Query: 382 AEALLDQISRCTNPK--PFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLF 439
                  I    +P    +++ +    T +K ERA ++  +M   L   I    + F+  
Sbjct: 396 MLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEM---LDRGICLNTIFFNSI 452

Query: 440 GNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRE---L 496
             +++  +EG +   ++S K  +     M R  ++   I+   L+      G + E   L
Sbjct: 453 --IDSHCKEGRV---IESEKLFDL----MVRIGVKPDIITYSTLIDGYCLAGKMDEAMKL 503

Query: 497 IQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSI 556
           +           T TY T+++   +      A+ +FK+M++ G+ P+  TYNI++     
Sbjct: 504 LSGMVSVGLKPNTVTYRTLINGYCKISRMGDALVLFKEMESSGVSPDIITYNIILQGLFQ 563

Query: 557 IRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLL 616
            R   +A  L   +   G   +  TY  ++  L      D+AL +   + L  +  +   
Sbjct: 564 TRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALRMFQNLCLMDLKLEART 623

Query: 617 YNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
           +N ++    + GR    + +      N + P+
Sbjct: 624 FNIMIDALLKVGRNGEAKDLFVAFSSNGLVPN 655


>gi|357130059|ref|XP_003566674.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 833

 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 132/556 (23%), Positives = 223/556 (40%), Gaps = 66/556 (11%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y  ++  L + G + +A NL + + ++ G+ P +  Y S + A  K  +M  A L L  M
Sbjct: 230 YNTVIHGLFREGEVSKACNLFHEMMQQ-GVVPDVVTYTSIIDALCKARAMDKAELVLRQM 288

Query: 185 DSRMVGKNEVTYTELLK----LAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRL 240
            S     N+VTY  ++        W++      E+    +     +I +   ++ S  + 
Sbjct: 289 ISNGFQPNKVTYNCMIHGYSISGQWKETAGMFREMTSQGLMP---NIVTCNSYMSSLCKH 345

Query: 241 RDLKSAYETLQHMVA------LAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVL-- 292
              K A E    M A      L     L     +EG      +D+    N++    ++  
Sbjct: 346 GKSKEAAEFFDSMAAKGHKPNLVTYSVLLHGYATEGCF----VDMLNLFNSMEGNGIVAD 401

Query: 293 RWSFSDVIHACGRTQNSGLAEQLML---QMQSLGLQPSSHTYDGFIRAIVSDRG-LRNGM 348
           +  F+ VI A G+    G+ ++ ML   QMQ  G+ P + TY G + A  S  G L + M
Sbjct: 402 QRVFNIVIDAYGK---RGMMDETMLIFTQMQEQGVIPDACTY-GIVIAAFSRMGRLADAM 457

Query: 349 EVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFL-AACDT 407
           +    M    LKP+     +L         L  A+ L+ ++     P+P   F  +  ++
Sbjct: 458 DKFNQMIAMGLKPEGIVYHSLIQGFCMHGNLVKAKELVSEMMSRGIPRPNIVFFNSIINS 517

Query: 408 MDKPERAIK---IFA-KMRQKLRPDIRTYELL---FSLFGNVNAPYE----------EGN 450
           + K  R ++   IF   +    RPD+ T+  L   + L G +   +           E +
Sbjct: 518 LCKEGRVVEAHDIFDFVIHIGERPDVITFNSLIDGYGLVGKIEKAFGVLDAMISAGIEPD 577

Query: 451 MFSQ---VDSAKRINAIE------MDMARNNIQHSHISMKNLLKAL-------GAEGMIR 494
           + S    +D   R   I+       +M    ++ + I+   +L  L       GA+ M  
Sbjct: 578 VVSYNTLIDGYCRNGRIDDGLILFGEMLSKGVKPTTITYGIILHGLFNDGRTVGAKKMCH 637

Query: 495 ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCC 554
           E+I+    S T +   T   +L  L        A+ +FK++    +  N A  N MID  
Sbjct: 638 EMIE----SGTTMDISTCGIILGGLCRNNCDDEAIAMFKKLGAMNVKFNIAIINTMIDAM 693

Query: 555 SIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDV 614
             +R  + A  L   +   G  P   TY  +IK LL  G  +EA N+  L+   G     
Sbjct: 694 YKVRKREEAKELFDSISATGLVPNASTYGVMIKNLLKEGSVEEADNMFSLMEKSGCAPSS 753

Query: 615 LLYNTILKKACEKGRI 630
            L N I++   EKG I
Sbjct: 754 RLLNYIIRVLLEKGEI 769



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 94/418 (22%), Positives = 154/418 (36%), Gaps = 68/418 (16%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ VIH   R      A  L  +M   G+ P   TY   I A+   R +     VL+ M
Sbjct: 229 TYNTVIHGLFREGEVSKACNLFHEMMQQGVVPDVVTYTSIIDALCKARAMDKAELVLRQM 288

Query: 355 QQNNLKPQDST---------IATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAAC 405
             N  +P   T         I+    E +       ++ L+  I  C      ++++++ 
Sbjct: 289 ISNGFQPNKVTYNCMIHGYSISGQWKETAGMFREMTSQGLMPNIVTC------NSYMSSL 342

Query: 406 DTMDKPERAIKIFAKMRQKL-RPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAI 464
               K + A + F  M  K  +P++ TY +L   +       +  N+F+ ++     N I
Sbjct: 343 CKHGKSKEAAEFFDSMAAKGHKPNLVTYSVLLHGYATEGCFVDMLNLFNSMEG----NGI 398

Query: 465 EMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVE 521
             D    NI         ++ A G  GM+ E +  F   +     P   TY  V+ +   
Sbjct: 399 VADQRVFNI---------VIDAYGKRGMMDETMLIFTQMQEQGVIPDACTYGIVIAAFSR 449

Query: 522 AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDG------- 574
                 AM+ F QM   G+ P    Y+ +I    +      A  LVS M+  G       
Sbjct: 450 MGRLADAMDKFNQMIAMGLKPEGIVYHSLIQGFCMHGNLVKAKELVSEMMSRGIPRPNIV 509

Query: 575 FY-----------------------------PQTMTYTALIKILLDYGDFDEALNLLDLV 605
           F+                             P  +T+ +LI      G  ++A  +LD +
Sbjct: 510 FFNSIINSLCKEGRVVEAHDIFDFVIHIGERPDVITFNSLIDGYGLVGKIEKAFGVLDAM 569

Query: 606 SLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
              GI  DV+ YNT++   C  GRID    +  +M    V+P   T   +  G  N G
Sbjct: 570 ISAGIEPDVVSYNTLIDGYCRNGRIDDGLILFGEMLSKGVKPTTITYGIILHGLFNDG 627



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 79/350 (22%), Positives = 138/350 (39%), Gaps = 52/350 (14%)

Query: 364 STIATLSVECSKA----LELDLAEALLDQISRCTNPKP-------FSAFL-----AACDT 407
           S IA       +A    L  + A  L D++ R T P P       F+A       AAC  
Sbjct: 34  SPIAAFGAATERARAGTLSTEDAHHLFDELLRQTIPVPERSLNGFFTALARAPSSAACR- 92

Query: 408 MDKPERAIKIFAKM-RQKLRPDIR-----TYELL-------------FSLFGN------- 441
            D P  A+ +F ++ R++ RP +      TY +L             F+LFG        
Sbjct: 93  -DGPSLAVALFNRICREEARPRVALPTVCTYNILMDCCCRTRRPTVGFALFGRFLKTGLK 151

Query: 442 ---VNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQ 498
              + A      ++    S   +N +   M    ++   IS   ++K L  +   +  + 
Sbjct: 152 MDVIVASILLKCLYHAKRSDDVVNLLLHRMPELGVEPDTISYNTVVKTLCEDSRSQRALD 211

Query: 499 --YFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC 553
             +    K+   +P   TYNTV+H L    E  +A  +F +M   G+ P+  TY  +ID 
Sbjct: 212 LLHTMVKKSGGCSPNVVTYNTVIHGLFREGEVSKACNLFHEMMQQGVVPDVVTYTSIIDA 271

Query: 554 CSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHD 613
               R    A  ++  M+ +GF P  +TY  +I      G + E   +   ++ +G+  +
Sbjct: 272 LCKARAMDKAELVLRQMISNGFQPNKVTYNCMIHGYSISGQWKETAGMFREMTSQGLMPN 331

Query: 614 VLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
           ++  N+ +   C+ G+        + M     +P+  T   +  GY   G
Sbjct: 332 IVTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPNLVTYSVLLHGYATEG 381



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 82/394 (20%), Positives = 148/394 (37%), Gaps = 30/394 (7%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ +I A  + +    AE ++ QM S G QP+  TY+  I         +    + + M
Sbjct: 264 TYTSIIDALCKARAMDKAELVLRQMISNGFQPNKVTYNCMIHGYSISGQWKETAGMFREM 323

Query: 355 QQNNLKPQDSTIAT-LSVECSKALELDLAEALLDQISRCTNPK--PFSAFLAACDTMDKP 411
               L P   T  + +S  C      + AE      ++   P    +S  L    T    
Sbjct: 324 TSQGLMPNIVTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPNLVTYSVLLHGYATEGCF 383

Query: 412 ERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQ------VDSAKRINAI 464
              + +F  M    +  D R + ++   +G      E   +F+Q      +  A     +
Sbjct: 384 VDMLNLFNSMEGNGIVADQRVFNIVIDAYGKRGMMDETMLIFTQMQEQGVIPDACTYGIV 443

Query: 465 EMDMARNNIQHSHISMKNLLKALG--AEGMI-RELIQYFC------------DSKTPLGT 509
               +R       +   N + A+G   EG++   LIQ FC                  G 
Sbjct: 444 IAAFSRMGRLADAMDKFNQMIAMGLKPEGIVYHSLIQGFCMHGNLVKAKELVSEMMSRGI 503

Query: 510 PT-----YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSAS 564
           P      +N++++SL +      A +IF  +   G  P+  T+N +ID   ++   + A 
Sbjct: 504 PRPNIVFFNSIINSLCKEGRVVEAHDIFDFVIHIGERPDVITFNSLIDGYGLVGKIEKAF 563

Query: 565 ALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKA 624
            ++  M+  G  P  ++Y  LI      G  D+ L L   +  +G+    + Y  IL   
Sbjct: 564 GVLDAMISAGIEPDVVSYNTLIDGYCRNGRIDDGLILFGEMLSKGVKPTTITYGIILHGL 623

Query: 625 CEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
              GR    + +  +M ++    D STC  +  G
Sbjct: 624 FNDGRTVGAKKMCHEMIESGTTMDISTCGIILGG 657



 Score = 62.8 bits (151), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 85/210 (40%), Gaps = 36/210 (17%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCS--------------- 555
           TY +++ +L +A+   +A  + +QM + G  PN  TYN MI   S               
Sbjct: 264 TYTSIIDALCKARAMDKAELVLRQMISNGFQPNKVTYNCMIHGYSISGQWKETAGMFREM 323

Query: 556 --------IIRC------------FKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDF 595
                   I+ C             K A+     M   G  P  +TY+ L+      G F
Sbjct: 324 TSQGLMPNIVTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPNLVTYSVLLHGYATEGCF 383

Query: 596 DEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFV 655
            + LNL + +   GI  D  ++N ++    ++G +D    I  QM +  V PD  T   V
Sbjct: 384 VDMLNLFNSMEGNGIVADQRVFNIVIDAYGKRGMMDETMLIFTQMQEQGVIPDACTYGIV 443

Query: 656 FSGYVNCGFHNSAMEAL-QVLSMRMLCEEV 684
            + +   G    AM+   Q+++M +  E +
Sbjct: 444 IAAFSRMGRLADAMDKFNQMIAMGLKPEGI 473



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 62/322 (19%), Positives = 124/322 (38%), Gaps = 21/322 (6%)

Query: 363 DSTIATLSVECSKALELDLAEALLDQISRCT-NPKPFSAFLAACDTMDKPERAIKIFAKM 421
           ++ + TL  +      LDL   ++ +   C+ N   ++  +       +  +A  +F +M
Sbjct: 194 NTVVKTLCEDSRSQRALDLLHTMVKKSGGCSPNVVTYNTVIHGLFREGEVSKACNLFHEM 253

Query: 422 -RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISM 480
            +Q + PD+ TY  +        A          +D A+    +   M  N  Q + ++ 
Sbjct: 254 MQQGVVPDVVTYTSIIDALCKARA----------MDKAE---LVLRQMISNGFQPNKVTY 300

Query: 481 KNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKT 537
             ++      G  +E    F +  +    P   T N+ + SL +  +S  A E F  M  
Sbjct: 301 NCMIHGYSISGQWKETAGMFREMTSQGLMPNIVTCNSYMSSLCKHGKSKEAAEFFDSMAA 360

Query: 538 CGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDE 597
            G  PN  TY++++   +   CF     L + M  +G       +  +I      G  DE
Sbjct: 361 KGHKPNLVTYSVLLHGYATEGCFVDMLNLFNSMEGNGIVADQRVFNIVIDAYGKRGMMDE 420

Query: 598 ALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFS 657
            + +   +  +G+  D   Y  ++      GR+        QM    ++P+    H +  
Sbjct: 421 TMLIFTQMQEQGVIPDACTYGIVIAAFSRMGRLADAMDKFNQMIAMGLKPEGIVYHSLIQ 480

Query: 658 GYVNCGFHNSAMEALQVLSMRM 679
           G+     H + ++A +++S  M
Sbjct: 481 GFC---MHGNLVKAKELVSEMM 499


>gi|357521289|ref|XP_003630933.1| Tau class glutathione S-transferase [Medicago truncatula]
 gi|355524955|gb|AET05409.1| Tau class glutathione S-transferase [Medicago truncatula]
          Length = 1320

 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 80/345 (23%), Positives = 140/345 (40%), Gaps = 20/345 (5%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ VIH   ++     A ++  +M   GL+P   TY   I        ++    V   M
Sbjct: 384 TYTSVIHGICKSGKMVEAREMFNEMLVKGLEPDEVTYTALIDGYCKAGEMKEAFSVHNQM 443

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRC---TNPKPFSAFLAACDTMDKP 411
            Q  L P   T   L+    K  E+D+A  LL ++SR     N   ++  +     +   
Sbjct: 444 VQKGLTPNVVTYTALADGLCKNGEIDVANELLHEMSRKGLQPNVYTYNTIVNGLCKIGNI 503

Query: 412 ERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           E+ +K+  +M      PD  TY  L      ++A  + G M ++     RI      M  
Sbjct: 504 EQTVKLMEEMDLAGFYPDTITYTTL------MDAYCKMGEM-AKAHELLRI------MLN 550

Query: 471 NNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHR 527
             +Q + ++   L+      GM+ +   LI++  +        T+N+++           
Sbjct: 551 KRLQPTLVTFNVLMNGFCMSGMLEDGERLIEWMLEKGIMPNATTFNSLMKQYCIKNNMRA 610

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
             EI+K M   G+ P++ TYNI+I      R  K A  L   MV  G+     TY ALI+
Sbjct: 611 TTEIYKAMHDRGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKGYSVTAATYDALIR 670

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDV 632
                  F EA  L + +   G+  +  +Y+  +    E+G  ++
Sbjct: 671 GFYKRKKFVEARKLFEEMRKHGLVAEKDIYDIFVDVNYEEGNWEI 715



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 92/194 (47%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TY +V+H + ++ +   A E+F +M   G+ P+  TY  +ID        K A ++ + M
Sbjct: 384 TYTSVIHGICKSGKMVEAREMFNEMLVKGLEPDEVTYTALIDGYCKAGEMKEAFSVHNQM 443

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           V+ G  P  +TYTAL   L   G+ D A  LL  +S +G+  +V  YNTI+   C+ G I
Sbjct: 444 VQKGLTPNVVTYTALADGLCKNGEIDVANELLHEMSRKGLQPNVYTYNTIVNGLCKIGNI 503

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEK 690
           +    ++E+M      PD  T   +   Y   G    A E L+++  + L   + T    
Sbjct: 504 EQTVKLMEEMDLAGFYPDTITYTTLMDAYCKMGEMAKAHELLRIMLNKRLQPTLVTFNVL 563

Query: 691 RSDFEDLILAEDSE 704
            + F    + ED E
Sbjct: 564 MNGFCMSGMLEDGE 577



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 77/353 (21%), Positives = 144/353 (40%), Gaps = 55/353 (15%)

Query: 314 QLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVEC 373
           +L+ +++  GL+P  + Y+  I  +  +  +    ++L+ M++  + P +    T+    
Sbjct: 298 KLVDELKGKGLKPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDNVVYTTVISGF 357

Query: 374 SKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMR-QKLRPDIRTY 432
            K          L  +S            AAC          K+F +MR +K+ PDI TY
Sbjct: 358 CK----------LGNVS------------AAC----------KLFDEMRRKKIVPDIVTY 385

Query: 433 ELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM--DMARNNIQHSHISMKNLLKALGAE 490
             +               +     S K + A EM  +M    ++   ++   L+      
Sbjct: 386 TSV---------------IHGICKSGKMVEAREMFNEMLVKGLEPDEVTYTALIDGYCKA 430

Query: 491 GMIRELI----QYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAAT 546
           G ++E      Q      TP    TY  +   L +  E   A E+  +M   G+ PN  T
Sbjct: 431 GEMKEAFSVHNQMVQKGLTP-NVVTYTALADGLCKNGEIDVANELLHEMSRKGLQPNVYT 489

Query: 547 YNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVS 606
           YN +++    I   +    L+  M   GFYP T+TYT L+      G+  +A  LL ++ 
Sbjct: 490 YNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTTLMDAYCKMGEMAKAHELLRIML 549

Query: 607 LEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
            + +   ++ +N ++   C  G ++  E +IE M +  + P+ +T + +   Y
Sbjct: 550 NKRLQPTLVTFNVLMNGFCMSGMLEDGERLIEWMLEKGIMPNATTFNSLMKQY 602



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 75/159 (47%)

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A+++F++    G+  N  + NI++ C   +   + A  L+  M   G +P  ++Y  ++ 
Sbjct: 226 AVKVFEEFPELGVCWNTVSCNIVLHCLCQLGKVREAHNLLVQMTDRGNFPDVVSYGVVVS 285

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
                G+ D+ L L+D +  +G+  D  +YN I+   C+ G +   E ++  M +  V P
Sbjct: 286 GYCRIGELDKVLKLVDELKGKGLKPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFP 345

Query: 648 DPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           D      V SG+   G  ++A +    +  + +  ++ T
Sbjct: 346 DNVVYTTVISGFCKLGNVSAACKLFDEMRRKKIVPDIVT 384



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/164 (21%), Positives = 70/164 (42%), Gaps = 2/164 (1%)

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYN-IMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTY 582
           E  + +++  ++K  G+ P+   YN I++  C      + A  L+  M + G +P  + Y
Sbjct: 292 ELDKVLKLVDELKGKGLKPDEYIYNNIILLLCKNGEVVE-AEQLLRGMRKWGVFPDNVVY 350

Query: 583 TALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642
           T +I      G+   A  L D +  + I  D++ Y +++   C+ G++     +  +M  
Sbjct: 351 TTVISGFCKLGNVSAACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNEMLV 410

Query: 643 NKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
             ++PD  T   +  GY   G    A      +  + L   V T
Sbjct: 411 KGLEPDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVT 454



 Score = 47.8 bits (112), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 61/313 (19%), Positives = 127/313 (40%), Gaps = 10/313 (3%)

Query: 132 LCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGK 191
           LCK G + EA  L+  +  ++G++P   VY + +    KL ++  A    D M  + +  
Sbjct: 322 LCKNGEVVEAEQLLRGM-RKWGVFPDNVVYTTVISGFCKLGNVSAACKLFDEMRRKKIVP 380

Query: 192 NEVTYTELLKLAVWQKNLSAVHEIW-EDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETL 250
           + VTYT ++        +    E++ E  +K       +    +  + +  ++K A+   
Sbjct: 381 DIVTYTSVIHGICKSGKMVEAREMFNEMLVKGLEPDEVTYTALIDGYCKAGEMKEAFSVH 440

Query: 251 QHMVALAMMGKLYI-NRTSEGRLRSSRLDIPIPLNALPVMKVLR---WSFSDVIHACGRT 306
             MV   +   +      ++G  ++  +D+   L      K L+   ++++ +++   + 
Sbjct: 441 NQMVQKGLTPNVVTYTALADGLCKNGEIDVANELLHEMSRKGLQPNVYTYNTIVNGLCKI 500

Query: 307 QNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTI 366
            N     +LM +M   G  P + TY   + A      +    E+L+IM    L+P   T 
Sbjct: 501 GNIEQTVKLMEEMDLAGFYPDTITYTTLMDAYCKMGEMAKAHELLRIMLNKRLQPTLVTF 560

Query: 367 ATLSVECSKALELDLAEALLDQI---SRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ 423
             L      +  L+  E L++ +       N   F++ +      +      +I+  M  
Sbjct: 561 NVLMNGFCMSGMLEDGERLIEWMLEKGIMPNATTFNSLMKQYCIKNNMRATTEIYKAMHD 620

Query: 424 K-LRPDIRTYELL 435
           + + PD  TY +L
Sbjct: 621 RGVMPDSNTYNIL 633



 Score = 45.8 bits (107), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 65/155 (41%)

Query: 509 TPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVS 568
           T + N VLH L +  +   A  +  QM   G  P+  +Y +++     I        LV 
Sbjct: 242 TVSCNIVLHCLCQLGKVREAHNLLVQMTDRGNFPDVVSYGVVVSGYCRIGELDKVLKLVD 301

Query: 569 MMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
            +   G  P    Y  +I +L   G+  EA  LL  +   G+  D ++Y T++   C+ G
Sbjct: 302 ELKGKGLKPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDNVVYTTVISGFCKLG 361

Query: 629 RIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
            +     + ++M + K+ PD  T   V  G    G
Sbjct: 362 NVSAACKLFDEMRRKKIVPDIVTYTSVIHGICKSG 396


>gi|440577332|emb|CCI55338.1| PH01B019A14.7 [Phyllostachys edulis]
          Length = 359

 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/293 (23%), Positives = 117/293 (39%), Gaps = 32/293 (10%)

Query: 411 PERAIKIFAKMRQK-----------LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAK 459
           P   +KIFA +R              R D +  E L+SL            M  ++  A+
Sbjct: 38  PNEVLKIFANIRDPSLITRAFKRACTRRDYKPNETLYSL------------MIDRIACAR 85

Query: 460 RINAIEMDMARNNIQHSHIS---MKNLLKALG-----AEGMIRELIQYFCDSKTPLGTPT 511
           R   +E  +AR  I+    S      L+K  G      E  I  L      +  P  T T
Sbjct: 86  RFGDVEELLARARIEKFRFSDEFFYRLIKMYGNVANHPEKAIETLFAMPGYNCWP-STKT 144

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           +N VLH LV  ++     E++      G+  +   +NI++     +  F  A +L+  M 
Sbjct: 145 FNYVLHMLVCKRQYEVVHEVYSSAPRLGVTLDTCCFNILVKGLCQLGKFDEAISLLHEMP 204

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
           + G  P   TY+ L+  L  +G  DEA  L + +  E I  D ++YN ++   C +GR+ 
Sbjct: 205 KQGCLPNVNTYSTLMHFLCQHGQVDEAFELFERMWKEDIAADTVVYNILISGLCREGRVT 264

Query: 632 VIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEV 684
               + + M      P+  T   +F+   +    +      Q  +++  C E+
Sbjct: 265 KAFDLFKSMASEGCYPNSGTYQLIFTSAFSSFSLDFPAIGFQANNLKDACHEI 317


>gi|242079087|ref|XP_002444312.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
 gi|241940662|gb|EES13807.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
          Length = 695

 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 75/373 (20%), Positives = 148/373 (39%), Gaps = 47/373 (12%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           +S++ VI    R+     A ++  +M   G+ P+  TY+  I   V    L  G  +   
Sbjct: 196 FSYNVVIAGLWRSGKGSDALKVFDEMVDRGVAPNQITYNTMIDGHVKGGDLEAGFRLRDQ 255

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPER 413
           M Q+  KP   T   L     +A  +D   AL+D+++  +                    
Sbjct: 256 MLQDGRKPNVVTYNVLLSGLCRAGRMDETRALMDEMTSYS-------------------- 295

Query: 414 AIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNI 473
                      + PD  TY +LF             +  ++   ++ + ++  +  +  +
Sbjct: 296 -----------MLPDGFTYSILF-------------DGLTRTGDSRTMLSLFGESLKKGV 331

Query: 474 QHSHISMKNLLKALGAEGMI---RELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAME 530
                +   LL  L  +G +    ++++    +     T  YNT+++   + ++   A  
Sbjct: 332 IIGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTAIYNTLINGYCQVRDLQGAFS 391

Query: 531 IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590
           IF+QMK+  I P+  TYN +I+    +     A  LV  M + G  P   T+  LI    
Sbjct: 392 IFEQMKSRHIRPDHITYNALINGLCKMEMITEAEDLVMEMEKSGVDPSVETFNTLIDAYG 451

Query: 591 DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650
             G  ++   +L  +  +GI  +V+ + +++K  C+ G+I     I++ M    V P+  
Sbjct: 452 RAGQLEKCFTVLSDMQDKGIKSNVISFGSVVKAFCKNGKIPEAVAILDDMIHKDVVPNAQ 511

Query: 651 TCHFVFSGYVNCG 663
             + +   Y+  G
Sbjct: 512 VYNSIIDAYIESG 524



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 74/314 (23%), Positives = 130/314 (41%), Gaps = 20/314 (6%)

Query: 412 ERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           + A  IF +M+ + +RPD  TY  L              N   +++       + M+M +
Sbjct: 387 QGAFSIFEQMKSRHIRPDHITYNALI-------------NGLCKMEMITEAEDLVMEMEK 433

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSK---TPLGTPTYNTVLHSLVEAQESHR 527
           + +  S  +   L+ A G  G + +      D +         ++ +V+ +  +  +   
Sbjct: 434 SGVDPSVETFNTLIDAYGRAGQLEKCFTVLSDMQDKGIKSNVISFGSVVKAFCKNGKIPE 493

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A+ I   M    + PNA  YN +ID        + A  LV  M   G      TY  L+K
Sbjct: 494 AVAILDDMIHKDVVPNAQVYNSIIDAYIESGGTEQAFLLVEKMKSSGVSASIFTYNLLLK 553

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
            L      DEA  L+  ++ +G+  DV+ YNTI+   C KG  D    ++++MH+  ++P
Sbjct: 554 GLCKNSQIDEAEELIYNLTNQGLRPDVVSYNTIISACCNKGDTDRALELLQEMHKYDIRP 613

Query: 648 DPSTCHFVFSGYVNCG-FHNSAMEALQVLSMRMLCEEVSTLEEKRSDFEDLILAEDSEAE 706
              T H + S   + G  H+  ME L    +    E  S++   R + E  + +   E  
Sbjct: 614 TLRTYHPLLSALGSAGRVHD--MECLYQHMVHKNVEPSSSIYGTRCENESKVASLKKEMS 671

Query: 707 SRILQFCEDSNENL 720
            + + F +    NL
Sbjct: 672 EKGIAFDDTERTNL 685



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 70/393 (17%), Positives = 154/393 (39%), Gaps = 42/393 (10%)

Query: 59  IVDALCRGERSRASHLLLNLGHAHHSLGADDFFH--ILNYCARSPDPLFVMETWRMMEEK 116
           ++  LCR  R   +  L++     +S+  D F +  + +   R+ D   ++  +    +K
Sbjct: 271 LLSGLCRAGRMDETRALMD-EMTSYSMLPDGFTYSILFDGLTRTGDSRTMLSLFGESLKK 329

Query: 117 EIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVH 176
            + +      +++  LCK G + +A  ++  L    G+ P   +YN+ +    ++  +  
Sbjct: 330 GVIIGAYTCSILLNGLCKDGKVAKAEQVLEML-VHTGLVPTTAIYNTLINGYCQVRDLQG 388

Query: 177 ANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH-YSLSIFSLRKFVW 235
           A    + M SR +  + +TY  L+      + ++   ++  +  K     S+ +    + 
Sbjct: 389 AFSIFEQMKSRHIRPDHITYNALINGLCKMEMITEAEDLVMEMEKSGVDPSVETFNTLID 448

Query: 236 SFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWS 295
           ++ R   L+  +  L  M                        D  I  N +        S
Sbjct: 449 AYGRAGQLEKCFTVLSDM-----------------------QDKGIKSNVI--------S 477

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           F  V+ A  +      A  ++  M    + P++  Y+  I A +   G      +++ M+
Sbjct: 478 FGSVVKAFCKNGKIPEAVAILDDMIHKDVVPNAQVYNSIIDAYIESGGTEQAFLLVEKMK 537

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDKP 411
            + +     T   L     K  ++D AE L+  ++     +P    ++  ++AC      
Sbjct: 538 SSGVSASIFTYNLLLKGLCKNSQIDEAEELIYNLTN-QGLRPDVVSYNTIISACCNKGDT 596

Query: 412 ERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVN 443
           +RA+++  +M +  +RP +RTY  L S  G+  
Sbjct: 597 DRALELLQEMHKYDIRPTLRTYHPLLSALGSAG 629



 Score = 48.1 bits (113), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 73/374 (19%), Positives = 155/374 (41%), Gaps = 23/374 (6%)

Query: 8   TRFQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQ------IVD 61
           T + ++ D F  S       R        SRT+ +  G   ES+ K   +       +++
Sbjct: 292 TSYSMLPDGFTYSILFDGLTRTGD-----SRTMLSLFG---ESLKKGVIIGAYTCSILLN 343

Query: 62  ALCR-GERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGL 120
            LC+ G+ ++A  +L  L H         +  ++N   +  D       +  M+ + I  
Sbjct: 344 GLCKDGKVAKAEQVLEMLVHTGLVPTTAIYNTLINGYCQVRDLQGAFSIFEQMKSRHIRP 403

Query: 121 NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLC 180
           ++  Y  ++  LCK   + EA +L+  + E+ G+ P +  +N+ + A  +   +      
Sbjct: 404 DHITYNALINGLCKMEMITEAEDLVMEM-EKSGVDPSVETFNTLIDAYGRAGQLEKCFTV 462

Query: 181 LDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYSLSIFSLRKFVWSFTR 239
           L  M  + +  N +++  ++K       +     I +D I K    +       + ++  
Sbjct: 463 LSDMQDKGIKSNVISFGSVVKAFCKNGKIPEAVAILDDMIHKDVVPNAQVYNSIIDAYIE 522

Query: 240 LRDLKSAYETLQHMVALAMMGKLYI-NRTSEGRLRSSRLDIPIPLNALPVMKVLR---WS 295
               + A+  ++ M +  +   ++  N   +G  ++S++D    L      + LR    S
Sbjct: 523 SGGTEQAFLLVEKMKSSGVSASIFTYNLLLKGLCKNSQIDEAEELIYNLTNQGLRPDVVS 582

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVL-KIM 354
           ++ +I AC    ++  A +L+ +M    ++P+  TY   + A+ S  G  + ME L + M
Sbjct: 583 YNTIISACCNKGDTDRALELLQEMHKYDIRPTLRTYHPLLSALGS-AGRVHDMECLYQHM 641

Query: 355 QQNNLKPQDSTIAT 368
              N++P  S   T
Sbjct: 642 VHKNVEPSSSIYGT 655



 Score = 40.4 bits (93), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 28/124 (22%), Positives = 54/124 (43%), Gaps = 2/124 (1%)

Query: 542 PNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNL 601
           P+ ++ N++++    +       A   ++V  G  P T  +   ++  +  GD DEAL +
Sbjct: 121 PSLSSCNLLLESLLSVGRHADVRAAFGLLVAAGARPDTFAWNKAVQACVAAGDLDEALAM 180

Query: 602 LDLVSL-EGI-PHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
           L  +   EG  P D   YN ++      G+      + ++M    V P+  T + +  G+
Sbjct: 181 LRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDRGVAPNQITYNTMIDGH 240

Query: 660 VNCG 663
           V  G
Sbjct: 241 VKGG 244


>gi|359491272|ref|XP_003634254.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Vitis vinifera]
          Length = 450

 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/269 (24%), Positives = 115/269 (42%), Gaps = 24/269 (8%)

Query: 394 NPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFS 453
           NPK F+       +  KP+RAIKIF  M +                G V        +  
Sbjct: 135 NPKTFAIITERYVSAGKPDRAIKIFFSMHEH---------------GCVQDLNSFNTILD 179

Query: 454 QVDSAKRINAIEMDMARNNI-QHSHISMKNLLKALGAEGMIRELIQYFCD---SKTPLGT 509
            +  +KR+     +MA N + +      + LLK     G ++E  ++F      K  +  
Sbjct: 180 VLCKSKRV-----EMADNKLFKVFRGRFRILLKGFFRAGQLKEAWEFFLQMKKRKCEIDV 234

Query: 510 PTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSM 569
            TY TV+H    A E  +A  +F +M   G+ P+ ATYN  I         ++A ++   
Sbjct: 235 VTYTTVVHGFGVAGEVRKAQRVFNEMIGEGVLPSVATYNAFIQVLCKKDNVENAISVFEE 294

Query: 570 MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
           M+R G+ P + TY  +I+ L   G  ++A+  +  +  +    +V +YN +++  C+   
Sbjct: 295 MLRKGYMPNSTTYNVVIRGLCHVGRMEKAMEFMARMKDDECEPNVQIYNVVIRYFCDAEE 354

Query: 630 IDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
           I+    + E+M      P+  T + + S 
Sbjct: 355 IEKGLNVFEKMGDADCLPNLDTYNILISA 383


>gi|356506793|ref|XP_003522160.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At4g17915-like [Glycine max]
          Length = 461

 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 74/367 (20%), Positives = 145/367 (39%), Gaps = 46/367 (12%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           AE  ++    LG+ P   TY+  I A      L     VL  M    + P   +  TL  
Sbjct: 32  AETAIVDGIRLGVLPDVVTYNTLIDAYCRFATLDVAYSVLARMHDAGIPPDVVSFNTL-- 89

Query: 372 ECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRT 431
                            IS       FS  L   D M            +++ + PD  +
Sbjct: 90  -----------------ISGAVRKSLFSKSLDLFDEM------------LKRGINPDAWS 120

Query: 432 YELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNI-QHSHISMK-NLLKALGA 489
           + +L +    +  P E   +F ++     ++    ++  N + ++ ++    +L + L  
Sbjct: 121 HNILMNCLFQLGKPDEANRVFKEIVLRDEVHPATYNIMINGLCKNGYVGNALSLFRNLQR 180

Query: 490 EGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNI 549
            G + +++             TYN +++ L +A+    A  + K+    G  PNA TY  
Sbjct: 181 HGFVPQVL-------------TYNALINGLCKARRLKDARRVLKEFGETGNEPNAVTYTT 227

Query: 550 MIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEG 609
           ++ CC   R F+    ++S M   GF      Y  +I  ++  G   EA  +++++   G
Sbjct: 228 VMTCCFRCRLFEEGLEILSEMRSLGFTFDGFAYCTVIAAMIKTGRMQEAEEIVEMMVSSG 287

Query: 610 IPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAM 669
           +  D++ YNT++   C +GR+D    +++++    ++ D  T   +  G    G  + A 
Sbjct: 288 VRPDLVSYNTLINLYCRQGRLDDALRLLDEIEGEGLECDQYTHTIIVDGLCKAGNFDGAQ 347

Query: 670 EALQVLS 676
             L  ++
Sbjct: 348 RHLNYMN 354



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 100/489 (20%), Positives = 184/489 (37%), Gaps = 62/489 (12%)

Query: 120 LNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANL 179
           L+ K   + + +LCK   +  A   I   G R G+ P +  YN+ + A  +  ++  A  
Sbjct: 11  LSTKLLNITVSSLCKAKQIPNAETAI-VDGIRLGVLPDVVTYNTLIDAYCRFATLDVAYS 69

Query: 180 CLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTR 239
            L  M    +  + V++  L+  AV +   S   +++++ +K        +    WS   
Sbjct: 70  VLARMHDAGIPPDVVSFNTLISGAVRKSLFSKSLDLFDEMLKR------GINPDAWSHNI 123

Query: 240 LRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLR-----W 294
           L            M  L  +GK                  P   N +    VLR      
Sbjct: 124 L------------MNCLFQLGK------------------PDEANRVFKEIVLRDEVHPA 153

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ +I+   +    G A  L   +Q  G  P   TY+  I  +   R L++   VLK  
Sbjct: 154 TYNIMINGLCKNGYVGNALSLFRNLQRHGFVPQVLTYNALINGLCKARRLKDARRVLKEF 213

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT---NPKPFSAFLAACDTMDKP 411
            +   +P   T  T+   C +    +    +L ++       +   +   +AA     + 
Sbjct: 214 GETGNEPNAVTYTTVMTCCFRCRLFEEGLEILSEMRSLGFTFDGFAYCTVIAAMIKTGRM 273

Query: 412 ERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           + A +I   M    +RPD+ +Y  L +L+       +   +  +++       +E D   
Sbjct: 274 QEAEEIVEMMVSSGVRPDLVSYNTLINLYCRQGRLDDALRLLDEIEG----EGLECD--- 326

Query: 471 NNIQHSH-ISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAM 529
              Q++H I +  L KA   +G  R L  Y            +N  L  L +A     A+
Sbjct: 327 ---QYTHTIIVDGLCKAGNFDGAQRHL-NYMNSLGFGSNLVAFNCFLDGLGKAGHIDHAL 382

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
            +F+ M+      ++ TY I++      R F  AS ++   ++ G+     T  A+I  L
Sbjct: 383 RLFEVMEV----KDSFTYTIVVHNLCRARRFLCASKVLVSCLKCGYQVLRATQRAVIVGL 438

Query: 590 LDYGDFDEA 598
              G  +EA
Sbjct: 439 RSIGYANEA 447



 Score = 47.8 bits (112), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 49/221 (22%), Positives = 93/221 (42%), Gaps = 5/221 (2%)

Query: 504 KTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSA 563
           K+ L T   N  + SL +A++   A          G+ P+  TYN +ID          A
Sbjct: 8   KSSLSTKLLNITVSSLCKAKQIPNAETAIVDGIRLGVLPDVVTYNTLIDAYCRFATLDVA 67

Query: 564 SALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKK 623
            ++++ M   G  P  +++  LI   +    F ++L+L D +   GI  D   +N ++  
Sbjct: 68  YSVLARMHDAGIPPDVVSFNTLISGAVRKSLFSKSLDLFDEMLKRGINPDAWSHNILMNC 127

Query: 624 ACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEE 683
             + G+ D    + +++   + +  P+T + + +G    G+  +A+   + L       +
Sbjct: 128 LFQLGKPDEANRVFKEIVL-RDEVHPATYNIMINGLCKNGYVGNALSLFRNLQRHGFVPQ 186

Query: 684 VSTLEEKRSDFEDLILAEDSEAESRIL-QFCEDSNENLAFT 723
           V T     +    L  A   +   R+L +F E  NE  A T
Sbjct: 187 VLTYN---ALINGLCKARRLKDARRVLKEFGETGNEPNAVT 224


>gi|302767472|ref|XP_002967156.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
 gi|300165147|gb|EFJ31755.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
          Length = 651

 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 127/643 (19%), Positives = 243/643 (37%), Gaps = 113/643 (17%)

Query: 107 METWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLG 166
           +E +R M  K+   +   Y  ++ ALCK G  +EA  ++  +  R G  P    +++ + 
Sbjct: 64  LEHFRAMA-KDCAPDVMTYTALVHALCKAGKFDEAQGMLREMIAR-GCAPDTVTFSTLID 121

Query: 167 ACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELL-KLAVWQKNLSAVHEIWEDYI-KHYS 224
              K  S   A   L+ +  R +G ++  +  ++ +L     ++    ++    I K ++
Sbjct: 122 GLCKFGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFT 181

Query: 225 LSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLN 284
            ++      +  F + +DL SAY+ L+ M+    +  ++                     
Sbjct: 182 PTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVF--------------------- 220

Query: 285 ALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGL 344
                     +F+ +I    +    G A+QL+ +M + G  P+  TY   I  +     +
Sbjct: 221 ----------TFTILITGLCKANRVGEAQQLLEKMVTGGCSPNVVTYSTVINGLCKQGQV 270

Query: 345 RNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAA 404
            +  E+ ++M++ N  P    + T ++             L+D + +             
Sbjct: 271 DDAYELFQLMERRNCPPN---VVTHNI-------------LIDGLCK------------- 301

Query: 405 CDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQV--DSAKRI 461
                + E A +++ +MR+    PDI TY  L           E   +F  +        
Sbjct: 302 ---AKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAA 358

Query: 462 NAIEMDMARNNIQHSHISMKNLLKA------LGAEGMIRELIQY------FCDSKT---- 505
           NA+      + + H + ++  +  A      L  +G   +L  Y      +C +      
Sbjct: 359 NAVTY----STLFHGYAALGRMADACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEV 414

Query: 506 ------------PLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC 553
                       P    T + VL  L E   + RA+++F  M   G   +A  YN++++ 
Sbjct: 415 VELVEEMASKGFPPRVNTLSAVLGGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEG 474

Query: 554 CSIIRCFKSASALVSMMV--RD-GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGI 610
            +       A A++  ++  RD  F P +    AL++ L   G  D+A  LL  +S  G 
Sbjct: 475 MARASKHNKALAVLEQVIDKRDRKFNPSSSAVDALVESLCQVGRTDDAKQLLHKMSERGF 534

Query: 611 PHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAME 670
              V  YN +L       R D    + E M      P+ ST + V S   +    + A E
Sbjct: 535 AAAVSSYNGLLSGLSRLQRWDEATQVFEAMVSAGPAPEISTVNVVISWLCSAAKVDDAYE 594

Query: 671 ALQVLSMRMLCEEVST--------LEEKRSDFEDLILAEDSEA 705
            +Q +S    C ++ T         +  R+D    +L E +EA
Sbjct: 595 LVQRMSKLGCCPDIETCNTLIGGYCKSGRADLARKLLEEMTEA 637



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 85/391 (21%), Positives = 155/391 (39%), Gaps = 34/391 (8%)

Query: 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
           ++++  +I       +  +A QL+ +M+S G + ++  +   ++ +     +   +E  +
Sbjct: 9   KFTYGILIRGFSSAGDLDIAIQLLEEMKSNGFEGNAVVHTTLMKGLCDAGRVVEALEHFR 68

Query: 353 IMQQNNLKPQDSTIATLSVECSKALELDLAEALL-DQISRCTNPKP--FSAFLAACDTMD 409
            M ++   P   T   L     KA + D A+ +L + I+R   P    FS  +       
Sbjct: 69  AMAKD-CAPDVMTYTALVHALCKAGKFDEAQGMLREMIARGCAPDTVTFSTLIDGLCKFG 127

Query: 410 KPERAIKI---------------FAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGN--MF 452
             E+A ++               F  + Q+L     + EL   + G V A        MF
Sbjct: 128 SEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFTPTVLMF 187

Query: 453 SQV----------DSAKRINAIEMDMA-RNNIQHSHISMKNLLKALGAEGMIRELIQYFC 501
           + V          DSA ++  + ++     N+    I +  L KA    G  ++L++   
Sbjct: 188 NLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKA-NRVGEAQQLLEKMV 246

Query: 502 DSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFK 561
                    TY+TV++ L +  +   A E+F+ M+    PPN  T+NI+ID     +  +
Sbjct: 247 TGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIE 306

Query: 562 SASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGI-PHDVLLYNTI 620
            A  L   M   G  P  +TY +LI  L      DEA  L   +   G+   + + Y+T+
Sbjct: 307 EARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTL 366

Query: 621 LKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
                  GR+     I   +      PD +T
Sbjct: 367 FHGYAALGRMADACRIFSMLVDKGFSPDLAT 397



 Score = 50.1 bits (118), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 58/137 (42%), Gaps = 1/137 (0%)

Query: 542 PNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNL 601
           PN  TY I+I   S       A  L+  M  +GF    + +T L+K L D G   EAL  
Sbjct: 7   PNKFTYGILIRGFSSAGDLDIAIQLLEEMKSNGFEGNAVVHTTLMKGLCDAGRVVEALEH 66

Query: 602 LDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVN 661
              ++ +  P DV+ Y  ++   C+ G+ D  + ++ +M      PD  T   +  G   
Sbjct: 67  FRAMAKDCAP-DVMTYTALVHALCKAGKFDEAQGMLREMIARGCAPDTVTFSTLIDGLCK 125

Query: 662 CGFHNSAMEALQVLSMR 678
            G    A   L+ +  R
Sbjct: 126 FGSEEQAFRVLEDVIQR 142


>gi|357444525|ref|XP_003592540.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355481588|gb|AES62791.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 507

 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 75/361 (20%), Positives = 148/361 (40%), Gaps = 23/361 (6%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           F  +I A G+ +   +   L+ +M+   L  +  T+    R  V  + ++  ++  + M+
Sbjct: 123 FHALIEALGKIRQFKMIWNLVDEMKQRKLL-NGDTFSLIARRYVRAKVIKEALKTFERME 181

Query: 356 QNNLKPQDSTIATL-SVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERA 414
           +  LKPQ S    L  V C     ++ A+ L D++ +        ++    +   + +  
Sbjct: 182 KYGLKPQISDFNKLIDVLCKSKFHVEKAQELFDKMRQWNLEPNLKSYTILIEGWSQQQNL 241

Query: 415 IKIFAKMRQ----KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           +K+    R+      +PD+ TY ++              N + +         I  DM  
Sbjct: 242 LKVDEVCREMKDDGFQPDVVTYGIII-------------NAYCKAKKYDEAIGIYHDMLS 288

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKT---PLGTPTYNTVLHSLVEAQESHR 527
            N+  S       +  LG    + E  ++F  SK    P   PTYN V+ +   +     
Sbjct: 289 KNVNPSPHIYCTFITGLGNGSRMDEAFEFFEKSKASGFPPEAPTYNAVVSAYCWSMRIDD 348

Query: 528 AMEIFKQMKTCGIPPNAATYN-IMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
           A  I  +MK  GI PNA TY+ I++      R  ++ S    M    G  P   TY  ++
Sbjct: 349 AYRIVGEMKELGIGPNARTYDIILVHLIKGGRTKEAYSVFQRMSSETGCEPSVSTYAIMV 408

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
           ++  +    D A+ + + +  +GI   + +++T++   C + ++D      +QM    ++
Sbjct: 409 RMFCNENQLDMAMVVWNEMKDKGILPGIHMFSTLIISLCHENKLDDACRYFQQMLDVGIR 468

Query: 647 P 647
           P
Sbjct: 469 P 469



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 69/177 (38%), Gaps = 1/177 (0%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           +Y  ++    + Q   +  E+ ++MK  G  P+  TY I+I+     + +  A  +   M
Sbjct: 227 SYTILIEGWSQQQNLLKVDEVCREMKDDGFQPDVVTYGIIINAYCKAKKYDEAIGIYHDM 286

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           +     P    Y   I  L +    DEA    +     G P +   YN ++   C   RI
Sbjct: 287 LSKNVNPSPHIYCTFITGLGNGSRMDEAFEFFEKSKASGFPPEAPTYNAVVSAYCWSMRI 346

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCE-EVST 686
           D    I+ +M +  + P+  T   +    +  G    A    Q +S    CE  VST
Sbjct: 347 DDAYRIVGEMKELGIGPNARTYDIILVHLIKGGRTKEAYSVFQRMSSETGCEPSVST 403


>gi|297724097|ref|NP_001174412.1| Os05g0393900 [Oryza sativa Japonica Group]
 gi|255676341|dbj|BAH93140.1| Os05g0393900 [Oryza sativa Japonica Group]
          Length = 553

 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/250 (25%), Positives = 115/250 (46%), Gaps = 13/250 (5%)

Query: 412 ERAIKIFAKMRQKLR--PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
           +RA+ +  +MR  LR  PD   +  + +   + + P   G   + +D A   + +  D A
Sbjct: 83  DRALHLLDEMRALLRRRPDAACFTTVAAALSSASRP---GAALAVLD-AMAADGVAPDAA 138

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAM 529
              +     + +  L+   A     E++++   +       TY+T++  L  A +   A+
Sbjct: 139 ACTVLVGVYACR--LRRFDAA---YEVVRWMVANGVAPDVVTYSTLISGLCSAGQVAEAL 193

Query: 530 EIFKQMKTCGIPPNAATYNIMIDC-CSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
            +   M   G  PNA TY  ++   C+  R    A  L++ M+  GF P T TY  L++ 
Sbjct: 194 GVLDLMLEEGCQPNAHTYTPIVHAYCTGGR-IHEAKRLLNTMIASGFAPSTATYNVLVEA 252

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
           L   G F+E   LL+  + +G   DV+ Y++ +   C+ GRID    ++++M  N +QP 
Sbjct: 253 LCKVGAFEEVDALLEESTAKGWTPDVITYSSYMDGLCKAGRIDKSFALVDKMLSNGLQPS 312

Query: 649 PSTCHFVFSG 658
             T + +  G
Sbjct: 313 EVTLNILLDG 322



 Score = 66.2 bits (160), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 78/353 (22%), Positives = 144/353 (40%), Gaps = 41/353 (11%)

Query: 323 GLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLA 382
           G QP++HTY   + A  +   +     +L  M  +   P  +T   L     K    +  
Sbjct: 203 GCQPNAHTYTPIVHAYCTGGRIHEAKRLLNTMIASGFAPSTATYNVLVEALCKVGAFEEV 262

Query: 383 EALLDQ-ISRCTNPK--PFSAFLAACDTMDKPERAIKIFA----KMRQKLRPDIRTYELL 435
           +ALL++  ++   P    +S+++   D + K  R  K FA     +   L+P   T  +L
Sbjct: 263 DALLEESTAKGWTPDVITYSSYM---DGLCKAGRIDKSFALVDKMLSNGLQPSEVTLNIL 319

Query: 436 FS--------------------LFGNVNAPYEEGNMFSQVDSAKRINAIEM--DMARNNI 473
                                 L  + N       M    D  + ++ +++  DMA+  I
Sbjct: 320 LDGVCRSSTAWAAKRLLECSAELGWDANVVNYNTVMRKLCDEHRWLSVVKLFTDMAKKGI 379

Query: 474 QHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP-TYNTVLHSLVEAQESHRAMEIF 532
             +  +   ++ +L   G + + + +   SK  + T  TYNT++  L  + E +    + 
Sbjct: 380 APNSWTFNIVVHSLCKLGRLHKAL-FLLRSKEFVATVITYNTLIRHLSISGEGNEVCLLL 438

Query: 533 KQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDY 592
            QM   GI PN  TY+++IDC      F  A       + D F+P    + ++I+ L+  
Sbjct: 439 YQMIEGGIAPNDITYSLVIDCLCREEKFLVALCCFYQSLEDDFFPS--AFLSIIRGLIVG 496

Query: 593 GDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEF-----IIEQM 640
           G   +   L+  V  +G   +V +Y  ++K  C+ G    +E      I+E+M
Sbjct: 497 GMLGQLHTLIGCVLGQGFIIEVYIYQELIKALCKNGYCQSVEMYKVCHILERM 549



 Score = 65.1 bits (157), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/323 (19%), Positives = 119/323 (36%), Gaps = 63/323 (19%)

Query: 380 DLAEALLDQISRCTNPKP----FSAFLAACDTMDKPERAIKIFAKMR-QKLRPDIRTYEL 434
           D A  LLD++      +P    F+   AA  +  +P  A+ +   M    + PD     +
Sbjct: 83  DRALHLLDEMRALLRRRPDAACFTTVAAALSSASRPGAALAVLDAMAADGVAPDAAACTV 142

Query: 435 LFSLFG----NVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAE 490
           L  ++       +A YE                +   M  N +    ++   L+  L + 
Sbjct: 143 LVGVYACRLRRFDAAYE----------------VVRWMVANGVAPDVVTYSTLISGLCSA 186

Query: 491 GMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATY 547
           G + E   ++    +        TY  ++H+       H A  +   M   G  P+ ATY
Sbjct: 187 GQVAEALGVLDLMLEEGCQPNAHTYTPIVHAYCTGGRIHEAKRLLNTMIASGFAPSTATY 246

Query: 548 NIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSL 607
           N++++    +  F+   AL+      G+ P  +TY++ +  L   G  D++  L+D +  
Sbjct: 247 NVLVEALCKVGAFEEVDALLEESTAKGWTPDVITYSSYMDGLCKAGRIDKSFALVDKMLS 306

Query: 608 EGI-PHDVLL----------------------------------YNTILKKACEKGRIDV 632
            G+ P +V L                                  YNT+++K C++ R   
Sbjct: 307 NGLQPSEVTLNILLDGVCRSSTAWAAKRLLECSAELGWDANVVNYNTVMRKLCDEHRWLS 366

Query: 633 IEFIIEQMHQNKVQPDPSTCHFV 655
           +  +   M +  + P+  T + V
Sbjct: 367 VVKLFTDMAKKGIAPNSWTFNIV 389



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 80/364 (21%), Positives = 139/364 (38%), Gaps = 37/364 (10%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSD-RGLRNGMEVLKIM 354
           F+ V  A       G A  ++  M + G+ P +      +       R      EV++ M
Sbjct: 105 FTTVAAALSSASRPGAALAVLDAMAADGVAPDAAACTVLVGVYACRLRRFDAAYEVVRWM 164

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQI--SRCT-NPKPFSAFLAACDTMDKP 411
             N + P   T +TL      A ++  A  +LD +    C  N   ++  + A  T  + 
Sbjct: 165 VANGVAPDVVTYSTLISGLCSAGQVAEALGVLDLMLEEGCQPNAHTYTPIVHAYCTGGRI 224

Query: 412 ERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAK----------- 459
             A ++   M      P   TY +L      V A +EE +   +  +AK           
Sbjct: 225 HEAKRLLNTMIASGFAPSTATYNVLVEALCKVGA-FEEVDALLEESTAKGWTPDVITYSS 283

Query: 460 ---------RIN---AIEMDMARNNIQHSHISMKNLLKAL---GAEGMIRELIQYFCDSK 504
                    RI+   A+   M  N +Q S +++  LL  +         + L++   +  
Sbjct: 284 YMDGLCKAGRIDKSFALVDKMLSNGLQPSEVTLNILLDGVCRSSTAWAAKRLLECSAELG 343

Query: 505 TPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI-DCCSIIRCFKSA 563
                  YNTV+  L +       +++F  M   GI PN+ T+NI++   C + R  K+ 
Sbjct: 344 WDANVVNYNTVMRKLCDEHRWLSVVKLFTDMAKKGIAPNSWTFNIVVHSLCKLGRLHKAL 403

Query: 564 SALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKK 623
             L S      F    +TY  LI+ L   G+ +E   LL  +   GI  + + Y+ ++  
Sbjct: 404 FLLRS----KEFVATVITYNTLIRHLSISGEGNEVCLLLYQMIEGGIAPNDITYSLVIDC 459

Query: 624 ACEK 627
            C +
Sbjct: 460 LCRE 463



 Score = 43.1 bits (100), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 31/145 (21%), Positives = 61/145 (42%), Gaps = 2/145 (1%)

Query: 521 EAQESHRAMEIFKQMKTC-GIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQT 579
           +   + RA+ +  +M+      P+AA +  +    S      +A A++  M  DG  P  
Sbjct: 78  DGAGADRALHLLDEMRALLRRRPDAACFTTVAAALSSASRPGAALAVLDAMAADGVAPDA 137

Query: 580 MTYTALIKIL-LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIE 638
              T L+ +       FD A  ++  +   G+  DV+ Y+T++   C  G++     +++
Sbjct: 138 AACTVLVGVYACRLRRFDAAYEVVRWMVANGVAPDVVTYSTLISGLCSAGQVAEALGVLD 197

Query: 639 QMHQNKVQPDPSTCHFVFSGYVNCG 663
            M +   QP+  T   +   Y   G
Sbjct: 198 LMLEEGCQPNAHTYTPIVHAYCTGG 222


>gi|242086791|ref|XP_002439228.1| hypothetical protein SORBIDRAFT_09g002630 [Sorghum bicolor]
 gi|241944513|gb|EES17658.1| hypothetical protein SORBIDRAFT_09g002630 [Sorghum bicolor]
          Length = 653

 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 78/379 (20%), Positives = 154/379 (40%), Gaps = 30/379 (7%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           ++ +I A  R    G    +   M+  G+QP+  TY+  +RA+  +  +    ++L  M 
Sbjct: 137 YNHLIDALLRENMVGAVALVCGNMRKDGVQPNVFTYNLLVRALCQNHRVGAARKMLDEMA 196

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAI 415
                P D T  T+         +D A  +L        P   +++ A    + +  R  
Sbjct: 197 TKGCPPDDVTYGTIVSALCTLGRVDEATEVLSAA-----PPVAASYNAVILALCREFRMQ 251

Query: 416 KIFA----KMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471
           ++FA     + + L+P++ TY  +              N F +    +   AI   M   
Sbjct: 252 EVFAVVGDMVGRGLQPNVITYTTIV-------------NAFCKAGELRMACAILARMVIT 298

Query: 472 NIQHSHISMKNLLKALGAEGMIRELIQYF----CDSKTPLGTPTYNTVLHSLVEAQESHR 527
               +  +   L+  L  +G + + +  +     +   P  T +YN ++  L    +   
Sbjct: 299 GCTPNVATFTALVGGLFNDGRVHDALDMWKCMVAEGWAP-STVSYNVLIRGLCSVGDLKG 357

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A  +   M+  G  PNA TY+ +ID  S       A ++ + M R G  P  + YT ++ 
Sbjct: 358 ASSVLNDMEQHGCFPNARTYSTLIDGFSKAGDLDGAISIWNDMTRSGCKPNVVVYTNMVG 417

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
           +      F++A +L+D + +E  P + + +NT+++  C   R+     +  +M ++   P
Sbjct: 418 VFCKKLMFNQAESLIDKMLVENCPPNTVTFNTLIRSLCNCRRVGRALGVFHEMRRHGCPP 477

Query: 648 DPSTCHFVFSGYV---NCG 663
           +  T + +  G     NCG
Sbjct: 478 NGRTYNELLHGLFREGNCG 496



 Score = 75.9 bits (185), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 76/354 (21%), Positives = 153/354 (43%), Gaps = 48/354 (13%)

Query: 319 MQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALE 378
           M + G  PS+ +Y+  IR + S   L+    VL  M+Q+   P   T +TL    SKA +
Sbjct: 330 MVAEGWAPSTVSYNVLIRGLCSVGDLKGASSVLNDMEQHGCFPNARTYSTLIDGFSKAGD 389

Query: 379 LDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSL 438
           LD A ++ + ++R                                  +P++  Y  +  +
Sbjct: 390 LDGAISIWNDMTR-------------------------------SGCKPNVVVYTNMVGV 418

Query: 439 FGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHI--SMKNLLKALGAEGMIREL 496
           F        +  MF+Q +S      +E +   N +  + +  S+ N  +   A G+  E+
Sbjct: 419 FC-------KKLMFNQAESLIDKMLVE-NCPPNTVTFNTLIRSLCNCRRVGRALGVFHEM 470

Query: 497 IQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSI 556
            ++ C    P    TYN +LH L        A+++  +M+  GI  +  TYN ++     
Sbjct: 471 RRHGC----PPNGRTYNELLHGLFREGNCGDALQMVIEMQNHGIELSLVTYNTVVSGLCQ 526

Query: 557 IRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLL 616
           +R  + A   V  M+  G  P   T+TA+I      G+   A  +L  +++     ++L+
Sbjct: 527 MRMGREAMFFVGRMIVRGIQPDAFTFTAIIHAYCKEGEVRMAAWILGAMNVVNCGRNILV 586

Query: 617 YNTILKKACEKGRI-DVIEFIIEQMHQNKVQPDPSTCHFVFSG-YVNCGFHNSA 668
           Y  ++ + C + ++ D + ++++ +++  + P+  T + +  G + N G +N +
Sbjct: 587 YTILMAELCNQDKLEDAMVYLLKMLYEG-IYPNTVTWNVLVRGVFRNLGCNNPS 639



 Score = 49.3 bits (116), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 43/219 (19%), Positives = 90/219 (41%), Gaps = 14/219 (6%)

Query: 454 QVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGA---EGMIRELIQYFCDSKTPLGT- 509
           ++ +A  ++ +++++    ++    +   L+ A+GA    G     ++ F  +   LG  
Sbjct: 70  RLAAAGDVDGVQLELQEMRLRGVPCTEGALVAAVGAFARAGAPDRALKTFYRAVHDLGCA 129

Query: 510 -PT----YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSAS 564
            PT    YN ++ +L+          +   M+  G+ PN  TYN+++          +A 
Sbjct: 130 RPTAPRLYNHLIDALLRENMVGAVALVCGNMRKDGVQPNVFTYNLLVRALCQNHRVGAAR 189

Query: 565 ALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKA 624
            ++  M   G  P  +TY  ++  L   G  DEA  +     L   P     YN ++   
Sbjct: 190 KMLDEMATKGCPPDDVTYGTIVSALCTLGRVDEATEV-----LSAAPPVAASYNAVILAL 244

Query: 625 CEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
           C + R+  +  ++  M    +QP+  T   + + +   G
Sbjct: 245 CREFRMQEVFAVVGDMVGRGLQPNVITYTTIVNAFCKAG 283



 Score = 48.9 bits (115), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 36/161 (22%), Positives = 71/161 (44%), Gaps = 7/161 (4%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC-CSIIRCFKSASALVSM 569
           TYN ++ +L +      A ++  +M T G PP+  TY  ++   C++ R  ++   L + 
Sbjct: 171 TYNLLVRALCQNHRVGAARKMLDEMATKGCPPDDVTYGTIVSALCTLGRVDEATEVLSAA 230

Query: 570 MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
                  P   +Y A+I  L       E   ++  +   G+  +V+ Y TI+   C+ G 
Sbjct: 231 ------PPVAASYNAVILALCREFRMQEVFAVVGDMVGRGLQPNVITYTTIVNAFCKAGE 284

Query: 630 IDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAME 670
           + +   I+ +M      P+ +T   +  G  N G  + A++
Sbjct: 285 LRMACAILARMVITGCTPNVATFTALVGGLFNDGRVHDALD 325


>gi|30694913|ref|NP_191463.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218525907|sp|Q9LYT2.2|PP287_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g59040
 gi|332646344|gb|AEE79865.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 583

 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 80/388 (20%), Positives = 150/388 (38%), Gaps = 60/388 (15%)

Query: 294 WSFSDV-----IHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGM 348
           W+FS++     I A G+  N   AE+++  +  +G  P+  +Y   + +        N  
Sbjct: 135 WNFSEIDFLMLITAYGKLGNFNGAERVLSVLSKMGSTPNVISYTALMESYGRGGKCNNAE 194

Query: 349 EVLKIMQQNNLKPQDST---IATLSVECSKALELD-LAEALLDQISRCTNP--KPFSAFL 402
            + + MQ +  +P   T   I    VE  K  E + + E LLD+      P  K +   +
Sbjct: 195 AIFRRMQSSGPEPSAITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMI 254

Query: 403 AACDTMDKPERAIKIFAKMRQKLRPD-IRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI 461
                    E+A K+F+ M  K  P    TY  L S                   S K +
Sbjct: 255 YMYKKAGNYEKARKVFSSMVGKGVPQSTVTYNSLMSF----------------ETSYKEV 298

Query: 462 NAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVE 521
           + I   M R++IQ   +S   L+KA G                                 
Sbjct: 299 SKIYDQMQRSDIQPDVVSYALLIKAYG--------------------------------R 326

Query: 522 AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMT 581
           A+    A+ +F++M   G+ P    YNI++D  +I    + A  +   M RD  +P   +
Sbjct: 327 ARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWS 386

Query: 582 YTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMH 641
           YT ++   ++  D + A      + ++G   +++ Y T++K   +   ++ +  + E+M 
Sbjct: 387 YTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGTLIKGYAKANDVEKMMEVYEKMR 446

Query: 642 QNKVQPDPSTCHFVFSGYVNCGFHNSAM 669
            + ++ + +    +      C    SA+
Sbjct: 447 LSGIKANQTILTTIMDASGRCKNFGSAL 474



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 71/344 (20%), Positives = 134/344 (38%), Gaps = 20/344 (5%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           S++ ++ + GR      AE +  +MQS G +PS+ TY   ++  V     +   EV + +
Sbjct: 176 SYTALMESYGRGGKCNNAEAIFRRMQSSGPEPSAITYQIILKTFVEGDKFKEAEEVFETL 235

Query: 355 ---QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKP 411
              +++ LKP       +     KA   + A  +   +     P+    + +        
Sbjct: 236 LDEKKSPLKPDQKMYHMMIYMYKKAGNYEKARKVFSSMVGKGVPQSTVTYNSLMSFETSY 295

Query: 412 ERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           +   KI+ +M R  ++PD+ +Y LL   +G      E  ++F ++  A            
Sbjct: 296 KEVSKIYDQMQRSDIQPDVVSYALLIKAYGRARREEEALSVFEEMLDA------------ 343

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHR 527
             ++ +H +   LL A    GM+ +    F   +     P   +Y T+L + V A +   
Sbjct: 344 -GVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEG 402

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A + FK++K  G  PN  TY  +I   +     +    +   M   G        T ++ 
Sbjct: 403 AEKFFKRIKVDGFEPNIVTYGTLIKGYAKANDVEKMMEVYEKMRLSGIKANQTILTTIMD 462

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
                 +F  AL     +   G+P D    N +L  A  +  ++
Sbjct: 463 ASGRCKNFGSALGWYKEMESCGVPPDQKAKNVLLSLASTQDELE 506


>gi|302762967|ref|XP_002964905.1| hypothetical protein SELMODRAFT_167316 [Selaginella moellendorffii]
 gi|300167138|gb|EFJ33743.1| hypothetical protein SELMODRAFT_167316 [Selaginella moellendorffii]
          Length = 773

 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 76/353 (21%), Positives = 141/353 (39%), Gaps = 21/353 (5%)

Query: 325 QPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEA 384
           +P+ H Y   I  +  +  L    E+ + M +N++K        L     +  + + +  
Sbjct: 79  KPTEHIYTIMIGIMGREGLLEKCSEIFEDMPENDVKWNVYAFTALINAYGRNGQYEASLH 138

Query: 385 LLDQISRCT---NPKPFSAFLAACDTMD-KPERAIKIFAKMR-QKLRPDIRTYELLFSLF 439
           LL ++ +     N   ++  L AC       E  + +FA+MR + ++PD+ TY  L S  
Sbjct: 139 LLARMKKEQVEPNLITYNTVLNACSKGGLDWEGLLNLFAQMRHEGIQPDLITYNTLLSAC 198

Query: 440 GNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAE---GMIREL 496
            +     +   +F               M  + +    ++ K+L+         G + EL
Sbjct: 199 SSRGLVEQAAMVFKT-------------MNESGVVADAVTYKSLVDTFAGSNQLGRVEEL 245

Query: 497 IQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSI 556
           ++   D   P     YN+++ +  +A   H A  +FKQM+  G  P+  TY+ ++     
Sbjct: 246 LREMEDEGNPPDIAGYNSLIEAYADAGNVHGAAGVFKQMQRGGCAPDVETYSTLLRIYGN 305

Query: 557 IRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLL 616
             CF+   +L S M      P   TY +LI++  + G F E++NL   +   G+  D   
Sbjct: 306 QGCFEQVRSLFSDMKDLSTPPTVATYNSLIQVFGEGGYFQESINLFHDMVDSGVKPDDAT 365

Query: 617 YNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAM 669
           Y+ +L      G       I + M  N+  P       + S Y     +  A+
Sbjct: 366 YSALLSVCGRGGLTREAAKIHQHMLTNESTPSLEASAGLISSYGKMAMYKDAL 418



 Score = 72.4 bits (176), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 89/428 (20%), Positives = 160/428 (37%), Gaps = 61/428 (14%)

Query: 295 SFSDVIHAC--GRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGL-RNGMEVL 351
           +++ V++AC  G     GL   L  QM+  G+QP   TY+  + A  S RGL      V 
Sbjct: 154 TYNTVLNACSKGGLDWEGLL-NLFAQMRHEGIQPDLITYNTLLSA-CSSRGLVEQAAMVF 211

Query: 352 KIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKP 411
           K M ++ +     T  +L    + + +L   E LL ++    NP                
Sbjct: 212 KTMNESGVVADAVTYKSLVDTFAGSNQLGRVEELLREMEDEGNP---------------- 255

Query: 412 ERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471
                          PDI  Y  L   + +    +    +F Q             M R 
Sbjct: 256 ---------------PDIAGYNSLIEAYADAGNVHGAAGVFKQ-------------MQRG 287

Query: 472 NIQHSHISMKNLLKALGAEGMIRELIQYFCDSK---TPLGTPTYNTVLHSLVEAQESHRA 528
                  +   LL+  G +G   ++   F D K   TP    TYN+++    E      +
Sbjct: 288 GCAPDVETYSTLLRIYGNQGCFEQVRSLFSDMKDLSTPPTVATYNSLIQVFGEGGYFQES 347

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
           + +F  M   G+ P+ ATY+ ++  C      + A+ +   M+ +   P       LI  
Sbjct: 348 INLFHDMVDSGVKPDDATYSALLSVCGRGGLTREAAKIHQHMLTNESTPSLEASAGLISS 407

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
                 + +AL     +   G+   V  Y+ +++   + G        +  M++   Q  
Sbjct: 408 YGKMAMYKDALVSYYRIREAGLDPQVSAYDALIQGYAKGGLYVEAGSTLYAMNKAGFQAP 467

Query: 649 PSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSD-----FEDLILAEDS 703
            S+ + V   Y   G H+ A+E    L  +    E S ++E+  +     + D+ L E++
Sbjct: 468 VSSVNSVMEAYSKVGLHDEALEFFSELQQK----EGSEVDERTHETLLGVYCDMGLLEEA 523

Query: 704 EAESRILQ 711
           + E  I++
Sbjct: 524 KEEFVIIK 531



 Score = 50.4 bits (119), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 67/157 (42%), Gaps = 4/157 (2%)

Query: 504 KTPLGTPTYNTVLHSLVEAQESHRAMEIFKQM-KTCGIPPNAATYNIMIDCCSIIRCFKS 562
           ++ L    ++ +        + HRA+ +FK M +     P    Y IMI         + 
Sbjct: 41  RSKLTMQDFSLIFREFAARSDWHRALRLFKYMQRQQWCKPTEHIYTIMIGIMGREGLLEK 100

Query: 563 ASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILK 622
            S +   M  +        +TALI      G ++ +L+LL  +  E +  +++ YNT+L 
Sbjct: 101 CSEIFEDMPENDVKWNVYAFTALINAYGRNGQYEASLHLLARMKKEQVEPNLITYNTVL- 159

Query: 623 KACEKGRIDVIEF--IIEQMHQNKVQPDPSTCHFVFS 657
            AC KG +D      +  QM    +QPD  T + + S
Sbjct: 160 NACSKGGLDWEGLLNLFAQMRHEGIQPDLITYNTLLS 196


>gi|225452992|ref|XP_002263038.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 644

 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 83/398 (20%), Positives = 159/398 (39%), Gaps = 20/398 (5%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           ++ +I+   +T ++  A +L+  M+    QP    Y   I ++  DR       +   M 
Sbjct: 182 YATLINGLCKTGHTSAAIRLLRSMEKGNCQPDVVVYGTLIHSLCKDRQQTQAFNLFSEMI 241

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKP---E 412
              + P   T  +L        E      LL+++          +     D + K     
Sbjct: 242 TKGISPNIVTCNSLVYALCNLGEWKHVNTLLNEMVDSKIMPNAISLTTVVDALCKEGMVA 301

Query: 413 RAIKIFAKMRQK-LRPDIRTYELLFS---LFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
           +A  +   M Q  + PD+ TY  L     L   ++   +  +M      A  +       
Sbjct: 302 QAHDVVDMMFQSGVEPDVVTYTALIDGHCLRSEMDEAVKVFDMMVHKGCAPNV------F 355

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRA 528
           + N + + +  ++ + KA+        L +  C  K    T TYNT++H L        A
Sbjct: 356 SYNTLINGYCKIERMDKAM-------YLFEEMCRQKLIPNTVTYNTLIHGLCHVGRLQDA 408

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
           + +F++M  CG  P+  TY I++D          A AL+  +      P    YT +I  
Sbjct: 409 IALFREMVACGQIPDLVTYRILLDYLCKNCHLDKAMALLKAIEGSNLDPDIQIYTIVIDG 468

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
           +   G+ ++A +L   +S +G+  +V  YN +    C++G +D    +  +M +N    D
Sbjct: 469 MCRAGELEDARDLFSNLSSKGLKPNVWTYNIMTHGLCKRGLLDEATKLFMEMDENACSAD 528

Query: 649 PSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
             T + +  G++     + A++ L+ +  R    +VST
Sbjct: 529 GCTYNTITQGFLRNNETSRAIQLLEEMLARGFSCDVST 566



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 84/385 (21%), Positives = 151/385 (39%), Gaps = 24/385 (6%)

Query: 311 LAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLS 370
            A  ++ ++  LG QP + ++   I+ +  +  +   + +   M     +P     ATL 
Sbjct: 127 FAFSVLAKILKLGCQPDTASFTTLIKGLCLEGQIGEALHLFDKMIWEGFQPDVVIYATLI 186

Query: 371 VECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDKPERAIKIFAKMRQK-L 425
               K      A  LL  + +  N +P    +   + +     +  +A  +F++M  K +
Sbjct: 187 NGLCKTGHTSAAIRLLRSMEK-GNCQPDVVVYGTLIHSLCKDRQQTQAFNLFSEMITKGI 245

Query: 426 RPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLK 485
            P+I T   L     N+                K +N +  +M  + I  + IS+  ++ 
Sbjct: 246 SPNIVTCNSLVYALCNLG-------------EWKHVNTLLNEMVDSKIMPNAISLTTVVD 292

Query: 486 ALGAEGMI---RELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPP 542
           AL  EGM+    +++     S       TY  ++       E   A+++F  M   G  P
Sbjct: 293 ALCKEGMVAQAHDVVDMMFQSGVEPDVVTYTALIDGHCLRSEMDEAVKVFDMMVHKGCAP 352

Query: 543 NAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL 602
           N  +YN +I+    I     A  L   M R    P T+TY  LI  L   G   +A+ L 
Sbjct: 353 NVFSYNTLINGYCKIERMDKAMYLFEEMCRQKLIPNTVTYNTLIHGLCHVGRLQDAIALF 412

Query: 603 -DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVN 661
            ++V+   IP D++ Y  +L   C+   +D    +++ +  + + PD      V  G   
Sbjct: 413 REMVACGQIP-DLVTYRILLDYLCKNCHLDKAMALLKAIEGSNLDPDIQIYTIVIDGMCR 471

Query: 662 CGFHNSAMEALQVLSMRMLCEEVST 686
            G    A +    LS + L   V T
Sbjct: 472 AGELEDARDLFSNLSSKGLKPNVWT 496



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 71/143 (49%)

Query: 506 PLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASA 565
           P     +  +L S+ + +     + + ++M + GIP N  T N++I+    +     A +
Sbjct: 71  PPSIVDFAKILTSITKVKRYSTVLSLSRKMDSFGIPHNVYTLNVLINSFCHLNRVNFAFS 130

Query: 566 LVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKAC 625
           +++ +++ G  P T ++T LIK L   G   EAL+L D +  EG   DV++Y T++   C
Sbjct: 131 VLAKILKLGCQPDTASFTTLIKGLCLEGQIGEALHLFDKMIWEGFQPDVVIYATLINGLC 190

Query: 626 EKGRIDVIEFIIEQMHQNKVQPD 648
           + G       ++  M +   QPD
Sbjct: 191 KTGHTSAAIRLLRSMEKGNCQPD 213


>gi|242069919|ref|XP_002450236.1| hypothetical protein SORBIDRAFT_05g002360 [Sorghum bicolor]
 gi|241936079|gb|EES09224.1| hypothetical protein SORBIDRAFT_05g002360 [Sorghum bicolor]
          Length = 833

 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 122/579 (21%), Positives = 215/579 (37%), Gaps = 106/579 (18%)

Query: 104 LFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNS 163
           L +   WR        +N+  +  +++ LC    L+EA+N++ +    +G  P +  YN+
Sbjct: 220 LILKTGWR--------VNHIVFNQLLKGLCDAKRLDEATNILLWRMPEFGCTPNVVSYNT 271

Query: 164 FL-GACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH 222
            + G C                       NE    E L+L         +H + +D    
Sbjct: 272 LVKGFC-----------------------NENRAEEALEL---------LHVMADDQGLS 299

Query: 223 YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIP 282
               + S    +  F R   +  AY     M+                       D  IP
Sbjct: 300 CPPDVVSYNTVINGFFREGQVDKAYNLFLQMI-----------------------DRGIP 336

Query: 283 LNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDR 342
            + +        +++ VI    + Q    A+ +  QM   G++PS+ TY+  I   +S  
Sbjct: 337 PDVV--------TYNTVIDGLCKAQVVDRAKAVFQQMLDKGVKPSNGTYNCLIHGYLSTG 388

Query: 343 GLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFL 402
             +  + +L+ M  ++L+P     A L     K      A  + D + R    KP     
Sbjct: 389 KWKEVVRLLEEMSTHDLEPDCFIYALLLDYLCKNGRCTEARNIFDSVIR-KGIKP----- 442

Query: 403 AACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI 461
              D M   + A+ IF KMRQ+ L P++  Y  L      +           +VD A   
Sbjct: 443 ---DAM--IDEAVCIFDKMRQQGLSPNVVNYGALIDALCKL----------GRVDDAI-- 485

Query: 462 NAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVE 521
                 +  N + +    +  + K   AE ++ E++    D    L    +NT++  L  
Sbjct: 486 ------LKFNQMINEVYGLCTVEKWEKAEELVFEML----DQGIRLDVVVFNTLMCDLCR 535

Query: 522 AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMT 581
                 A  + + M   G+ P+  +YN ++D   +      A+ L+ +MV  G  P   T
Sbjct: 536 EGRVMEAQRLIELMLRVGVRPDVISYNTLVDGHCLTGRTDEAAKLLDVMVSIGLKPNEFT 595

Query: 582 YTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMH 641
           Y  L+         D+A +LL  + + G   DV+ YNTIL    + GR    + +   M 
Sbjct: 596 YNTLLHGYCKARRIDDAYSLLREMLMNGPTPDVVTYNTILHGLFQTGRFSEAKELYLNMI 655

Query: 642 QNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRML 680
            ++ Q D  T + + +G       + A +  Q L  + L
Sbjct: 656 NSRTQWDMYTYNIILNGLCKNNCVDEAFKMFQSLCSKGL 694



 Score = 60.5 bits (145), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 57/266 (21%), Positives = 108/266 (40%), Gaps = 10/266 (3%)

Query: 421 MRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISM 480
           +R  +RPD+ +Y  L           E   +   +D    I     +   N + H +   
Sbjct: 550 LRVGVRPDVISYNTLVDGHCLTGRTDEAAKL---LDVMVSIGLKPNEFTYNTLLHGYCKA 606

Query: 481 KNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGI 540
           + +  A     ++RE++    +  TP    TYNT+LH L +      A E++  M     
Sbjct: 607 RRIDDAYS---LLREMLM---NGPTP-DVVTYNTILHGLFQTGRFSEAKELYLNMINSRT 659

Query: 541 PPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALN 600
             +  TYNI+++      C   A  +   +   G     +T+  +I  LL  G  ++A++
Sbjct: 660 QWDMYTYNIILNGLCKNNCVDEAFKMFQSLCSKGLQLHIITFNIMIGALLKGGKKEDAMD 719

Query: 601 LLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYV 660
           L   +S  G+  DV  Y  I +   ++G ++ +  +   M +N   P+    + +   ++
Sbjct: 720 LFATISAYGLVPDVETYCLIAENLIKEGSLEELGVLFSAMEENGTAPNSRMLNALVRRFL 779

Query: 661 NCGFHNSAMEALQVLSMRMLCEEVST 686
           + G  + A   L  L  +    E ST
Sbjct: 780 HRGDISRAGAYLSKLDEKNFSLEAST 805



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 80/403 (19%), Positives = 152/403 (37%), Gaps = 56/403 (13%)

Query: 315 LMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM---QQNNLKPQDSTIATLSV 371
           L+ +M   G  P+  +Y+  ++   ++      +E+L +M   Q  +  P   +  T+  
Sbjct: 253 LLWRMPEFGCTPNVVSYNTLVKGFCNENRAEEALELLHVMADDQGLSCPPDVVSYNTVIN 312

Query: 372 ECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPE---RAIKIFAKMRQK-LRP 427
              +  ++D A  L  Q+     P     +    D + K +   RA  +F +M  K ++P
Sbjct: 313 GFFREGQVDKAYNLFLQMIDRGIPPDVVTYNTVIDGLCKAQVVDRAKAVFQQMLDKGVKP 372

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL 487
              TY  L              + +      K +  +  +M+ ++++        LL  L
Sbjct: 373 SNGTYNCLI-------------HGYLSTGKWKEVVRLLEEMSTHDLEPDCFIYALLLDYL 419

Query: 488 GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQES-HRAMEIFKQMKTCGIPPNAAT 546
              G   E    F            ++V+   ++       A+ IF +M+  G+ PN   
Sbjct: 420 CKNGRCTEARNIF------------DSVIRKGIKPDAMIDEAVCIFDKMRQQGLSPNVVN 467

Query: 547 YNIMIDC-CSIIRC----------------------FKSASALVSMMVRDGFYPQTMTYT 583
           Y  +ID  C + R                       ++ A  LV  M+  G     + + 
Sbjct: 468 YGALIDALCKLGRVDDAILKFNQMINEVYGLCTVEKWEKAEELVFEMLDQGIRLDVVVFN 527

Query: 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
            L+  L   G   EA  L++L+   G+  DV+ YNT++   C  GR D    +++ M   
Sbjct: 528 TLMCDLCREGRVMEAQRLIELMLRVGVRPDVISYNTLVDGHCLTGRTDEAAKLLDVMVSI 587

Query: 644 KVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
            ++P+  T + +  GY      + A   L+ + M     +V T
Sbjct: 588 GLKPNEFTYNTLLHGYCKARRIDDAYSLLREMLMNGPTPDVVT 630



 Score = 49.7 bits (117), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 79/171 (46%), Gaps = 13/171 (7%)

Query: 506 PLGTPTYNTVLHSLVEAQESHRAME------IFKQM-KTCG--IPPNAATYNIMIDCCSI 556
           P     +N +L ++  A   H  +E      +F +M + C   + P+  TY+I+I C   
Sbjct: 148 PASVTAFNHLLTAVSRASGRHSTLESQLGISLFDRMVRECSDKVAPDRCTYSILIGCFCR 207

Query: 557 IRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLE-GIPHDVL 615
           +   +   A+  ++++ G+    + +  L+K L D    DEA N+L     E G   +V+
Sbjct: 208 MGRLEHGFAVFGLILKTGWRVNHIVFNQLLKGLCDAKRLDEATNILLWRMPEFGCTPNVV 267

Query: 616 LYNTILKKACEKGRIDVIEFIIEQMHQNK---VQPDPSTCHFVFSGYVNCG 663
            YNT++K  C + R +    ++  M  ++     PD  + + V +G+   G
Sbjct: 268 SYNTLVKGFCNENRAEEALELLHVMADDQGLSCPPDVVSYNTVINGFFREG 318


>gi|326503836|dbj|BAK02704.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 399

 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 73/333 (21%), Positives = 136/333 (40%), Gaps = 21/333 (6%)

Query: 361 PQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKP---ERAIKI 417
           P + T A L      A  L  AE ++ ++     P   + + A  D + K    E+A+++
Sbjct: 12  PTEDTYALLLRAYCTAGSLHRAEGVISEMREHGIPPSATVYNAYLDGLLKARCAEKAVEV 71

Query: 418 FAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHS 476
           + +M R++ R +  TY L+ +++G    P     +F ++ S            + NI   
Sbjct: 72  YQRMKRERCRTNTETYTLMINVYGKSKQPMSAMKVFKEMQSIG---------CKANI--- 119

Query: 477 HISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFK 533
             +   L+ A   EG+  +  + F + +     P    YN ++ +   A     A EIF 
Sbjct: 120 -CTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGFPQAASEIFS 178

Query: 534 QMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYG 593
            M+  G  P+ A+YNI++D        + A A+   + R G  P   ++  L+      G
Sbjct: 179 LMQHMGCEPDRASYNILVDAYGRAGLHREAEAVFESLKRQGMAPTMKSHMLLLAAHARSG 238

Query: 594 DFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCH 653
           +      ++  +   G+  D +  N +L      GR+D +E ++  M +   + D  T +
Sbjct: 239 NVARCEEVMAQLHKSGLAPDTIALNAMLNAYGRAGRLDDMERLLAAMERRGTR-DVGTYN 297

Query: 654 FVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
              + Y   G+      A   L  R L  +V T
Sbjct: 298 VAVNAYGRAGYLERMEAAFASLERRGLAADVVT 330



 Score = 53.1 bits (126), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 59/308 (19%), Positives = 125/308 (40%), Gaps = 29/308 (9%)

Query: 282 PLNALPVMKVLR--------WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDG 333
           P++A+ V K ++         +++ +++A  R      AE++  +MQ  G +P  + Y+ 
Sbjct: 100 PMSAMKVFKEMQSIGCKANICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNA 159

Query: 334 FIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR-- 391
            + A       +   E+  +MQ    +P  ++   L     +A     AEA+ + + R  
Sbjct: 160 LMEAYSRAGFPQAASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHREAEAVFESLKRQG 219

Query: 392 -CTNPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEG 449
                K     LAA        R  ++ A++ +  L PD      + + +G         
Sbjct: 220 MAPTMKSHMLLLAAHARSGNVARCEEVMAQLHKSGLAPDTIALNAMLNAYGRAG------ 273

Query: 450 NMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCD-SKTPLG 508
               ++D  +R+ A        ++   +++    + A G  G +  +   F    +  L 
Sbjct: 274 ----RLDDMERLLAAMERRGTRDVGTYNVA----VNAYGRAGYLERMEAAFASLERRGLA 325

Query: 509 TP--TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASAL 566
               T+ + + +    +E  R +EIF++M   G  P+A T  +++  CS  R  +  +A+
Sbjct: 326 ADVVTWTSRMGAYARKKEYRRCLEIFEEMVDAGCYPDAGTAKVLVAACSDERQVEQVTAI 385

Query: 567 VSMMVRDG 574
           V  M ++ 
Sbjct: 386 VRSMHKEA 393



 Score = 45.4 bits (106), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 64/372 (17%), Positives = 133/372 (35%), Gaps = 54/372 (14%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           AE ++ +M+  G+ PS+  Y+ ++  ++  R     +EV + M++   +    T   +  
Sbjct: 33  AEGVISEMREHGIPPSATVYNAYLDGLLKARCAEKAVEVYQRMKRERCRTNTETYTLMIN 92

Query: 372 ECSKALELDLAEALLDQISRC---TNPKPFSAFLAACDTMDKPERAIKIFAKMRQKL-RP 427
              K+ +   A  +  ++       N   ++A + A       E+A ++F +M+Q    P
Sbjct: 93  VYGKSKQPMSAMKVFKEMQSIGCKANICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEP 152

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL 487
           D+  Y  L   +     P     +FS +         E D A  NI         L+ A 
Sbjct: 153 DVYAYNALMEAYSRAGFPQAASEIFSLMQHM----GCEPDRASYNI---------LVDAY 199

Query: 488 GAEGMIRELIQYFCDSKTPLGTPTYNT---VLHSLVEAQESHRAMEIFKQMKTCGIPPNA 544
           G  G+ RE    F   K     PT  +   +L +   +    R  E+  Q+   G+ P+ 
Sbjct: 200 GRAGLHREAEAVFESLKRQGMAPTMKSHMLLLAAHARSGNVARCEEVMAQLHKSGLAPDT 259

Query: 545 ----------------------------------ATYNIMIDCCSIIRCFKSASALVSMM 570
                                              TYN+ ++        +   A  + +
Sbjct: 260 IALNAMLNAYGRAGRLDDMERLLAAMERRGTRDVGTYNVAVNAYGRAGYLERMEAAFASL 319

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
            R G     +T+T+ +       ++   L + + +   G   D      ++    ++ ++
Sbjct: 320 ERRGLAADVVTWTSRMGAYARKKEYRRCLEIFEEMVDAGCYPDAGTAKVLVAACSDERQV 379

Query: 631 DVIEFIIEQMHQ 642
           + +  I+  MH+
Sbjct: 380 EQVTAIVRSMHK 391



 Score = 41.2 bits (95), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 72/324 (22%), Positives = 124/324 (38%), Gaps = 25/324 (7%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y L+++A C  G L  A  +I  + E +GI P   VYN++L    K      A      M
Sbjct: 17  YALLLRAYCTAGSLHRAEGVISEMRE-HGIPPSATVYNAYLDGLLKARCAEKAVEVYQRM 75

Query: 185 DSRMVGKNEVTYTELLKLAVWQKN---LSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLR 241
                  N  TYT  L + V+ K+   +SA+    E        +I +    V +F R  
Sbjct: 76  KRERCRTNTETYT--LMINVYGKSKQPMSAMKVFKEMQSIGCKANICTYTALVNAFAREG 133

Query: 242 DLKSAYETLQHMVALAMMGKLYI-NRTSEGRLRSSRLDIPIPLNALPVMKVL-------- 292
             + A E  + M        +Y  N   E   R+       P  A  +  ++        
Sbjct: 134 LCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAG-----FPQAASEIFSLMQHMGCEPD 188

Query: 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
           R S++ ++ A GR      AE +   ++  G+ P+  ++   + A      +    EV+ 
Sbjct: 189 RASYNILVDAYGRAGLHREAEAVFESLKRQGMAPTMKSHMLLLAAHARSGNVARCEEVMA 248

Query: 353 IMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKP- 411
            + ++ L P    +  +     +A  LD  E LL  + R    +    +  A +   +  
Sbjct: 249 QLHKSGLAPDTIALNAMLNAYGRAGRLDDMERLLAAMER-RGTRDVGTYNVAVNAYGRAG 307

Query: 412 --ERAIKIFAKM-RQKLRPDIRTY 432
             ER    FA + R+ L  D+ T+
Sbjct: 308 YLERMEAAFASLERRGLAADVVTW 331


>gi|413949109|gb|AFW81758.1| hypothetical protein ZEAMMB73_033635 [Zea mays]
          Length = 691

 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 76/359 (21%), Positives = 148/359 (41%), Gaps = 20/359 (5%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A +    M S G+ P+ +TY+  IRA+      +  + +L+ M+     P   T  TL  
Sbjct: 134 ARRFFDSMLSDGVAPNVYTYNILIRALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVA 193

Query: 372 ECSKALELDLAEALLDQI---SRCTNPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLRP 427
              +A E+D AE L+  +       N   F++ +       K E A K+F +M R+ L P
Sbjct: 194 AFFRAGEVDGAERLVGMMLDGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMMREGLAP 253

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL 487
           D  +Y  L   +      +E  ++F++             M +  I    ++  +L+  +
Sbjct: 254 DGVSYNTLVGGYCKAGCSHEALSVFAE-------------MTQKGIMPDVVTFTSLIHVM 300

Query: 488 GAEGMIR---ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNA 544
              G +     L++   +    +   T+  ++    +      A+   + M+ C I P+ 
Sbjct: 301 CKAGNLEWAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMRQCRIKPSV 360

Query: 545 ATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDL 604
             YN +I+   ++     A  L+  M   G  P  +TY+ +I       D   A  L   
Sbjct: 361 VCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQ 420

Query: 605 VSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
           +  +G+  D + Y+++++  CE+ R+     + + M +  +QPD  T   +  G+   G
Sbjct: 421 MLEKGVLPDAITYSSLIRVLCEEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEG 479



 Score = 74.3 bits (181), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 84/392 (21%), Positives = 163/392 (41%), Gaps = 35/392 (8%)

Query: 294 WSFSDVIHA-CGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
           ++++ +I A CGR      A  ++  M+  G  P+  TY+  + A      +     ++ 
Sbjct: 151 YTYNILIRALCGRGHRKE-ALSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVG 209

Query: 353 IMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMD 409
           +M    LKP   T  ++     KA +++ A  + D++ R     +   ++  +       
Sbjct: 210 MMLDGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMMREGLAPDGVSYNTLVGGYCKAG 269

Query: 410 KPERAIKIFAKMRQK-LRPDIRTYELLFSLF---GN-------VNAPYEEGNMFSQVDSA 458
               A+ +FA+M QK + PD+ T+  L  +    GN       V    E G   ++V   
Sbjct: 270 CSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEVTFT 329

Query: 459 KRINAI------------EMDMARNNIQHSHISMKNLLKA---LGAEGMIRELIQYFCDS 503
             I+                 M +  I+ S +    L+     +G     REL+      
Sbjct: 330 ALIDGFCKKGFLDDALLAVRGMRQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAK 389

Query: 504 KTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSA 563
                  TY+T++ +  +  ++H A E+ +QM   G+ P+A TY+ +I      +    A
Sbjct: 390 GLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCEEKRLSDA 449

Query: 564 SALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKK 623
             L   M++ G  P   TYT+LI      G+ + AL+L D +   G+  DV+ Y+ ++  
Sbjct: 450 HVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVERALSLHDKMVKAGVLPDVVTYSVLING 509

Query: 624 ACEKGR-IDVIEFIIEQMHQNKVQPDPSTCHF 654
             +  R ++  + + +  H+   +P P+   +
Sbjct: 510 LSKSARAMEAQQLLFKLYHE---EPIPANTKY 538



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 88/176 (50%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           T+N++++ + +A +   A ++F +M   G+ P+  +YN ++       C   A ++ + M
Sbjct: 222 TFNSMVNGMCKAGKMEDARKVFDEMMREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEM 281

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
            + G  P  +T+T+LI ++   G+ + A+ L+  +   G+  + + +  ++   C+KG +
Sbjct: 282 TQKGIMPDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFL 341

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           D     +  M Q +++P     + + +GY   G  + A E L  +  + L  +V T
Sbjct: 342 DDALLAVRGMRQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVT 397



 Score = 43.9 bits (102), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 98/445 (22%), Positives = 164/445 (36%), Gaps = 112/445 (25%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +F+ +IH   +  N   A  L+ QM+  GLQ +  T+   I        L + +  ++ M
Sbjct: 292 TFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGM 351

Query: 355 QQNNLKPQDSTIATLSVECSKAL--------ELDLAEALLDQISRCTNPKP--------F 398
           +Q  +KP        SV C  AL         +D A  LL ++      KP         
Sbjct: 352 RQCRIKP--------SVVCYNALINGYCMVGRMDEARELLHEM-EAKGLKPDVVTYSTII 402

Query: 399 SAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDS 457
           SA+   CDT      A ++  +M +K + PD  TY  L  +        EE         
Sbjct: 403 SAYCKNCDT----HSAFELNQQMLEKGVLPDAITYSSLIRVL------CEE--------- 443

Query: 458 AKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLH 517
            KR++             +H+  KN++K LG +         F          TY +++ 
Sbjct: 444 -KRLS------------DAHVLFKNMIK-LGLQP------DEF----------TYTSLID 473

Query: 518 SLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFY- 576
              +     RA+ +  +M   G+ P+  TY+++I+  S     KSA A+ +  +    Y 
Sbjct: 474 GHCKEGNVERALSLHDKMVKAGVLPDVVTYSVLINGLS-----KSARAMEAQQLLFKLYH 528

Query: 577 ----PQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDV 632
               P    Y AL+       +    L L                   LK  C KG ++ 
Sbjct: 529 EEPIPANTKYDALMHCCRK-AELKSVLAL-------------------LKGFCMKGLMNE 568

Query: 633 IEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEAL----QVLSMRMLCEEVSTLE 688
            + + + M       D S    +  G+   G   + M+AL    Q+L         ST+ 
Sbjct: 569 ADKVYQSMLDRNWNLDGSVYSVLIHGHCRAG---NVMKALSFHKQMLQRGFAPNSTSTIS 625

Query: 689 EKRSDFEDLILAEDSEAESRILQFC 713
             R  FE+ ++ E  +   ++L  C
Sbjct: 626 LIRGLFENGMVVEADQVIQQLLNCC 650



 Score = 39.7 bits (91), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 64/135 (47%), Gaps = 13/135 (9%)

Query: 111 RMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAK 170
           R M +  I  +  CY  ++   C  G ++EA  L++ + E  G+ P +  Y++ + A  K
Sbjct: 349 RGMRQCRIKPSVVCYNALINGYCMVGRMDEARELLHEM-EAKGLKPDVVTYSTIISAYCK 407

Query: 171 ---LHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSI 227
               HS    N     M  + V  + +TY+ L+++   +K LS  H ++++ IK      
Sbjct: 408 NCDTHSAFELN---QQMLEKGVLPDAITYSSLIRVLCEEKRLSDAHVLFKNMIK------ 458

Query: 228 FSLRKFVWSFTRLRD 242
             L+   +++T L D
Sbjct: 459 LGLQPDEFTYTSLID 473


>gi|449524916|ref|XP_004169467.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g74580-like [Cucumis
           sativus]
          Length = 877

 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 83/400 (20%), Positives = 160/400 (40%), Gaps = 55/400 (13%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +F+ +IH   +  N   +E+L  ++   G+ P+  T++ FI+ +     +     +L+ +
Sbjct: 218 TFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESI 277

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPKPFS------AFLAACDT 407
               L P   +  TL     K  +L  AE  L + ++    P  F+       F  A   
Sbjct: 278 VSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKA-GM 336

Query: 408 MDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMD 467
           M   ++ ++    M +   PD  TY  L      +N    +G+M        R  A+  +
Sbjct: 337 MQNADKILR--DAMFKGFIPDEFTYSSL------INGLCNDGDM-------NRAMAVFYE 381

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHR 527
                 +HS I    L+K L  +G++ +                                
Sbjct: 382 AMEKGFKHSIILYNTLVKGLSKQGLVLQ-------------------------------- 409

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A+++ K M   G  P+  TYN++++    + C   A+ +++  +  G  P   T+  LI 
Sbjct: 410 ALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLID 469

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
                 + D+A+ +LD +   GI  DV+ YNT+L   C+  ++D +    + M +    P
Sbjct: 470 GYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTP 529

Query: 648 DPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTL 687
           +  T + +   +      + AME  + +  R L  ++ TL
Sbjct: 530 NIITYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTL 569



 Score = 72.8 bits (177), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 114/556 (20%), Positives = 219/556 (39%), Gaps = 35/556 (6%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y  +M  L + GY  +A   +Y   +  GIYP +  +   + +         A   L+ M
Sbjct: 114 YNAIMNILVEYGYFSQAHK-VYMRMKDIGIYPDVYTHTIRMKSFCITGRPTAALRLLNNM 172

Query: 185 DSRMVGKNEVTYTELLKLAVWQKN--LSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRD 242
             +    N V+Y  ++    +++N  + A H   E   +     I +  K +    +  +
Sbjct: 173 PGQGCEFNAVSYCAVIS-GFYKENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKKGN 231

Query: 243 LKSAYETLQHMVALAMMGKLY-INRTSEGRLRSSRLDIPIPLNALPVMKVLR---WSFSD 298
           ++ + +    ++   +   L+  N   +G  R   +D    L    V + L     S++ 
Sbjct: 232 VQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNT 291

Query: 299 VIHACGRTQNSGL--AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQ 356
           +I  CG  ++S L  AE  + +M + G++P+  TY+  I        ++N  ++L+    
Sbjct: 292 LI--CGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMF 349

Query: 357 NNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPE---- 412
               P + T ++L        +++ A A+  +       K F   +   +T+ K      
Sbjct: 350 KGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAME----KGFKHSIILYNTLVKGLSKQG 405

Query: 413 ---RAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
              +A+++   M +    PDI TY L+ +    +    +   + +   +   I  I    
Sbjct: 406 LVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDI---F 462

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRA 528
             N +   +   +N+ KA+       E++             TYNT+L+ L +A++    
Sbjct: 463 TFNTLIDGYCKQRNMDKAI-------EILDTMLSHGITPDVITYNTLLNGLCKARKLDNV 515

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
           ++ FK M   G  PN  TYNI+I+     R    A  L   M   G  P  +T   LI  
Sbjct: 516 VDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICG 575

Query: 589 LLDYGDFDEALNLLDLVSLE-GIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
           L   G+ D+A  L   +  E    +   ++N ++   C K  + + E +  +M  +   P
Sbjct: 576 LCSNGELDKAYELFVTIEKEYKFSYSTAIFNIMINAFCXKLNVSMAEKLFHKMGGSDCAP 635

Query: 648 DPSTCHFVFSGYVNCG 663
           D  T   +   Y   G
Sbjct: 636 DNYTYRVMIDSYCKTG 651



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 77/163 (47%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           +Y  V+    +      A  +F +M   GI P+  T+N +I         + +  L S +
Sbjct: 183 SYCAVISGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKV 242

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           ++ G  P   T+   I+ L   G  DEA  LL+ +  EG+  DV+ YNT++   C+  ++
Sbjct: 243 MKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKL 302

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
              E  + +M  + V+P+  T + + +G+   G   +A + L+
Sbjct: 303 VEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILR 345



 Score = 55.8 bits (133), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 66/310 (21%), Positives = 131/310 (42%), Gaps = 38/310 (12%)

Query: 389 ISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK--LRPDIRTYELLFSLFGNVNAPY 446
           ++R   PK  +A +      + P  A+K+F +++ +   +  + TY+ +    G ++  +
Sbjct: 1   MNRALQPKHVAAVIR---YQNDPLNALKMFNQVKTEDGFKHTLETYKCMIEKLG-LHGKF 56

Query: 447 EE-----GNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYF- 500
           E        M   VDS K +  + + + R+                G +G ++E +  F 
Sbjct: 57  EAMEDVLAEMRKNVDS-KMLEGVYIGIMRD---------------YGRKGKVQEAVNVFE 100

Query: 501 ------CDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCC 554
                 C+        +YN +++ LVE     +A +++ +MK  GI P+  T+ I +   
Sbjct: 101 RMDFYDCEP----SVQSYNAIMNILVEYGYFSQAHKVYMRMKDIGIYPDVYTHTIRMKSF 156

Query: 555 SIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDV 614
            I     +A  L++ M   G     ++Y A+I          EA +L D +  +GI  D+
Sbjct: 157 CITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQGICPDI 216

Query: 615 LLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQV 674
           L +N ++   C+KG +   E +  ++ +  V P+  T +    G    G  + A   L+ 
Sbjct: 217 LTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLES 276

Query: 675 LSMRMLCEEV 684
           +    L  +V
Sbjct: 277 IVSEGLTPDV 286


>gi|9758456|dbj|BAB08985.1| membrane-associated salt-inducible protein-like [Arabidopsis
           thaliana]
          Length = 949

 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 88/463 (19%), Positives = 175/463 (37%), Gaps = 67/463 (14%)

Query: 288 VMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNG 347
           + K  R  F  ++   GR  +   A +   +M++ G+ P+S  Y   I A    R +   
Sbjct: 304 ISKPSRTEFGLMVKFYGRRGDMHRARETFERMRARGITPTSRIYTSLIHAYAVGRDMDEA 363

Query: 348 MEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ---ISRCTNPKPFSAFL-A 403
           +  ++ M++  ++    T + +    SKA   + A+   D+   I +  N   +   + A
Sbjct: 364 LSCVRKMKEEGIEMSLVTYSVIVGGFSKAGHAEAADYWFDEAKRIHKTLNASIYGKIIYA 423

Query: 404 ACDT-----------------MDKP-----------------ERAIKIFAKMRQ-KLRPD 428
            C T                 +D P                 ++ + +F ++++    P 
Sbjct: 424 HCQTCNMERAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEKKGLVVFKRLKECGFTPT 483

Query: 429 IRTYELLFSLFGNVN----------APYEEG------------NMFSQVDSAKRINAIEM 466
           + TY  L +L+  V              EEG            N F ++       A+  
Sbjct: 484 VVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFE 543

Query: 467 DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNT---VLHSLVEAQ 523
           DM +  ++   I   N++ A    G +   IQ   + +     PT  T   ++H   ++ 
Sbjct: 544 DMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSG 603

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
           +  R++E+F  M+ CG  P   T+N +I+     R    A  ++  M   G      TYT
Sbjct: 604 DMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKR---QAVEILDEMTLAGVSANEHTYT 660

Query: 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
            +++     GD  +A      +  EG+  D+  Y  +LK  C+ GR+     + ++M   
Sbjct: 661 KIMQGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACCKSGRMQSALAVTKEMSAR 720

Query: 644 KVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
            +  +    + +  G+   G    A + +Q +    +  ++ T
Sbjct: 721 NIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHT 763



 Score = 80.1 bits (196), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 103/232 (44%), Gaps = 10/232 (4%)

Query: 456 DSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTV 515
           D AKRI+          I ++H    N+ +A   E ++RE+ +   D+   +    Y+T+
Sbjct: 403 DEAKRIHKTLNASIYGKIIYAHCQTCNMERA---EALVREMEEEGIDAPIAI----YHTM 455

Query: 516 LHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGF 575
           +       +  + + +FK++K CG  P   TY  +I+  + +     A  +  +M  +G 
Sbjct: 456 MDGYTMVADEKKGLVVFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGV 515

Query: 576 YPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEF 635
                TY+ +I   +   D+  A  + + +  EG+  DV+LYN I+   C  G +D    
Sbjct: 516 KHNLKTYSMMINGFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQ 575

Query: 636 IIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTL 687
            +++M + + +P   T   +  GY   G       +L+V  M   C  V T+
Sbjct: 576 TVKEMQKLRHRPTTRTFMPIIHGYAKSG---DMRRSLEVFDMMRRCGCVPTV 624



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 114/591 (19%), Positives = 233/591 (39%), Gaps = 70/591 (11%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           + LM++   + G +  A      +  R GI P   +Y S + A A    M  A  C+  M
Sbjct: 312 FGLMVKFYGRRGDMHRARETFERMRAR-GITPTSRIYTSLIHAYAVGRDMDEALSCVRKM 370

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK--HYSLSIFSLRKFVWSFTRLRD 242
               +  + VTY+ ++     +   +   + W D  K  H +L+     K +++  +  +
Sbjct: 371 KEEGIEMSLVTYSVIVG-GFSKAGHAEAADYWFDEAKRIHKTLNASIYGKIIYAHCQTCN 429

Query: 243 LKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHA 302
           ++ A   ++ M               EG      +D PI      +   +   ++ V   
Sbjct: 430 MERAEALVREM-------------EEEG------IDAPI-----AIYHTMMDGYTMVA-- 463

Query: 303 CGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQ 362
               +  GL   +  +++  G  P+  TY   I        +   +EV ++M++  +K  
Sbjct: 464 ---DEKKGLV--VFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVK-- 516

Query: 363 DSTIATLSVECSKALEL-DLAEALL---DQISRCTNPKP--FSAFLAACDTMDKPERAIK 416
              + T S+  +  ++L D A A     D +     P    ++  ++A   M   +RAI+
Sbjct: 517 -HNLKTYSMMINGFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQ 575

Query: 417 IFAKMRQ-KLRPDIRTYELL---FSLFGNVNAPYEEGNMFSQ---VDSAKRINAI----- 464
              +M++ + RP  RT+  +   ++  G++    E  +M  +   V +    N +     
Sbjct: 576 TVKEMQKLRHRPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLV 635

Query: 465 ----------EMDMARNNI-QHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYN 513
                     EM +A  +  +H++  +     ++G  G   E      +    +   TY 
Sbjct: 636 EKRQAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIFTYE 695

Query: 514 TVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRD 573
            +L +  ++     A+ + K+M    IP N+  YNI+ID  +       A+ L+  M ++
Sbjct: 696 ALLKACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKE 755

Query: 574 GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVI 633
           G  P   TYT+ I      GD + A   ++ +   G+  ++  Y T++K        +  
Sbjct: 756 GVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGWARASLPEKA 815

Query: 634 EFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEV 684
               E+M    ++PD +  H + +  ++     S  EA     +  +C+E+
Sbjct: 816 LSCYEEMKAMGIKPDKAVYHCLLTSLLS---RASIAEAYIYSGVMTICKEM 863



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 84/449 (18%), Positives = 173/449 (38%), Gaps = 39/449 (8%)

Query: 120 LNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANL 179
           LN   Y  ++ A C+   +E A  L+  + E  GI   + +Y++ +     +       +
Sbjct: 412 LNASIYGKIIYAHCQTCNMERAEALVREM-EEEGIDAPIAIYHTMMDGYTMVADEKKGLV 470

Query: 180 CLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEI----WEDYIKHYSLSIFSLRKFVW 235
               +         VTY  L+ L      +S   E+     E+ +KH +L  +S+   + 
Sbjct: 471 VFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKH-NLKTYSM--MIN 527

Query: 236 SFTRLRDLKSAYETLQHMVALAMMGKLYI-NRTSEGRLRSSRLDIPIPLNALPVMKVLRW 294
            F +L+D  +A+   + MV   M   + + N           +D  I    +  M+ LR 
Sbjct: 528 GFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAI--QTVKEMQKLRH 585

Query: 295 -----SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGME 349
                +F  +IH   ++ +   + ++   M+  G  P+ HT++G I  +V  R     +E
Sbjct: 586 RPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKR---QAVE 642

Query: 350 VLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPK------PFSAFLA 403
           +L  M    +   + T   +    +   +   A    +  +R  N         + A L 
Sbjct: 643 ILDEMTLAGVSANEHTYTKIMQGYASVGDTGKA---FEYFTRLQNEGLDVDIFTYEALLK 699

Query: 404 ACDTMDKPERAIKIFAKMRQKLRP-DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRIN 462
           AC    + + A+ +  +M  +  P +   Y +L   +      +E  ++  Q+    +  
Sbjct: 700 ACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQM----KKE 755

Query: 463 AIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEA 522
            ++ D+      H++ S  +     G      + I+            TY T++     A
Sbjct: 756 GVKPDI------HTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGWARA 809

Query: 523 QESHRAMEIFKQMKTCGIPPNAATYNIMI 551
               +A+  +++MK  GI P+ A Y+ ++
Sbjct: 810 SLPEKALSCYEEMKAMGIKPDKAVYHCLL 838



 Score = 49.7 bits (117), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 52/222 (23%), Positives = 94/222 (42%), Gaps = 24/222 (10%)

Query: 2   YRPLLRTRFQLIADSFCKSKFHKH--ERRNVANKLELSRTLTTTMGLNEESISKATQMQI 59
           +RP  RT F  I   + KS   +   E  ++  +     T+ T  GL    + K   ++I
Sbjct: 585 HRPTTRT-FMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQAVEI 643

Query: 60  VDALCRGERSRASHLLLNLGHAHHSLG----ADDFF----------------HILNYCAR 99
           +D +     S   H    +   + S+G    A ++F                 +L  C +
Sbjct: 644 LDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACCK 703

Query: 100 SPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILP 159
           S      +   + M  + I  N+  Y +++    + G + EA++LI  + ++ G+ P + 
Sbjct: 704 SGRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQM-KKEGVKPDIH 762

Query: 160 VYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLK 201
            Y SF+ AC+K   M  A   ++ M++  V  N  TYT L+K
Sbjct: 763 TYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIK 804


>gi|115465970|ref|NP_001056584.1| Os06g0111300 [Oryza sativa Japonica Group]
 gi|113594624|dbj|BAF18498.1| Os06g0111300 [Oryza sativa Japonica Group]
          Length = 978

 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 128/617 (20%), Positives = 247/617 (40%), Gaps = 67/617 (10%)

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
           ME+ +I  +   Y ++++   K G  E+A  +   + ++ G+      Y +       + 
Sbjct: 371 MEQNKIVPDEVIYGILVRIYGKLGLYEDAQRMFEEI-DKAGLLSDEQTYVAMAQVHMNVQ 429

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRK 232
           +   A   LD M +R V  ++ +Y+ LL+  V ++++ A  + +     +    +F    
Sbjct: 430 NYDRALQVLDAMRARNVKPSQFSYSALLRCHVAKEDVDAAEDTFRALSNYGPPDVFCCND 489

Query: 233 FVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPV---- 288
            +  + RL  L  A   +  M                 R  + + D  + +  L V    
Sbjct: 490 LLRLYMRLGHLDKARALILKM-----------------RKEALQFDEDLCVTVLEVCCKT 532

Query: 289 -MKVLRWSFSDVIHACGRTQ---NSGLAEQLMLQMQSL-----GLQPSSHTYDGFIRAIV 339
            +     + ++VI   G +    N   +  L + ++SL     GL   S     F R   
Sbjct: 533 SINKDTDNLTEVIQNEGSSSKVLNPTDSSTLSMMLKSLLDKPGGLSSVSQLIMKFAREGS 592

Query: 340 SDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFS 399
           +D        + + + +   KP D+ IATL V+  +A +L+ A+ L +  S  + P   S
Sbjct: 593 TD----EAKFLYEHLTELGAKPDDTAIATLIVQYGQAQQLEQAQKLFETAS-TSFPVGGS 647

Query: 400 AFLAACDTM---DKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQV 455
            + A  D +    K E A ++F ++  Q    D  T  +L      V    ++G ++S V
Sbjct: 648 VYNAMVDALCRCGKTEEAYRLFMELIDQGHNGDAVTISIL------VTHLTKQGKLYSAV 701

Query: 456 DSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKT---PLGTPTY 512
               R       M  + I  S  +   ++   G  G + + ++ F  ++    P+   TY
Sbjct: 702 SIYDR-------MISSGIPRSMQTFNIMISVYGQGGKLEKAVEMFSAAQELGLPIDEKTY 754

Query: 513 NTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVR 572
             +L    +A + H A  +F +MK  GI P   ++N MI+  +       A  +   M +
Sbjct: 755 TNMLSFYGKAGKHHEASLLFSRMKEDGIRPGKISFNTMINAYATSGLHNEAEIIFQEMQK 814

Query: 573 DGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDV 632
           +   P + TY ALI+   +   + +A   + ++    +      +N ++    ++G+ID 
Sbjct: 815 NNHVPDSHTYLALIRAYTEGKCYSKAEEAIQMMLRSNMTPSCTHFNHLISAFLKEGQIDE 874

Query: 633 IEFIIEQMHQNKVQPDPSTCHFVFS-----GYVNCG--FHNSAMEALQ----VLSMRMLC 681
            + +  QM +  +  D + C  +       GYV+ G  F  +A   L+    +LS     
Sbjct: 875 AQRMYNQMEEAGIPADLACCRTMMRMHLDHGYVDDGILFFETACRLLKPDSFILSAAFHL 934

Query: 682 EEVSTLEEKRSDFEDLI 698
            E S  E +  D  D I
Sbjct: 935 YEHSGRESEAGDVLDAI 951



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 62/301 (20%), Positives = 119/301 (39%), Gaps = 22/301 (7%)

Query: 373 CSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKL--RPDIR 430
           CS     D+ EA+   +++ T    F         +    +A   FA M+ +L   P + 
Sbjct: 116 CSSPSSADMREAMASFVAKLT----FREMCFVLHELRGWRQARDFFAWMKLQLCYEPSVV 171

Query: 431 TYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAE 490
            Y +L  L+G             QV   K      ++M +   +   ++   LL A    
Sbjct: 172 AYTILLRLYG-------------QVGKVKLAEVTFLEMLQAGCEPDAVACGTLLCAYARW 218

Query: 491 GMIRELIQYFCDSKTPLGTPT---YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATY 547
           G + +++ ++   +     P+   +N ++ SL + +   + + +++QM    + PN  TY
Sbjct: 219 GKLNDMLMFYAAVRRRDIVPSISVFNFMVSSLQKQKLHGKVIHLWEQMLEANVAPNQFTY 278

Query: 548 NIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSL 607
            ++I   +     + A      M R  F P+  TY+ LI +   +G  +EAL L D + +
Sbjct: 279 TVVIGSYAKEGMLEEAMDAFGEMKRRRFVPEEATYSLLISLCAKHGKGEEALGLYDEMKV 338

Query: 608 EGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNS 667
           + I        ++L    +         +  +M QNK+ PD      +   Y   G +  
Sbjct: 339 KSIVPSNYTCASVLTLYYKNEDYSKALSLFSEMEQNKIVPDEVIYGILVRIYGKLGLYED 398

Query: 668 A 668
           A
Sbjct: 399 A 399



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 73/384 (19%), Positives = 159/384 (41%), Gaps = 40/384 (10%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           F+ ++ +  + +  G    L  QM    + P+  TY   I +   +  L   M+    M+
Sbjct: 243 FNFMVSSLQKQKLHGKVIHLWEQMLEANVAPNQFTYTVVIGSYAKEGMLEEAMDAFGEMK 302

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTM----DKP 411
           +    P+++T + L   C+K  + + A  L D++ +  +  P +   A+  T+    +  
Sbjct: 303 RRRFVPEEATYSLLISLCAKHGKGEEALGLYDEM-KVKSIVPSNYTCASVLTLYYKNEDY 361

Query: 412 ERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
            +A+ +F++M Q K+ PD   Y +L  ++G +    +   MF ++D A  ++  +  +A 
Sbjct: 362 SKALSLFSEMEQNKIVPDEVIYGILVRIYGKLGLYEDAQRMFEEIDKAGLLSDEQTYVAM 421

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAME 530
             +   H++++N  +AL     +R                +Y+ +L   V  ++   A +
Sbjct: 422 AQV---HMNVQNYDRALQVLDAMRA-------RNVKPSQFSYSALLRCHVAKEDVDAAED 471

Query: 531 IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGF-YPQTMTYTA----- 584
            F+ +   G PP+    N ++     +     A AL+  M ++   + + +  T      
Sbjct: 472 TFRALSNYG-PPDVFCCNDLLRLYMRLGHLDKARALILKMRKEALQFDEDLCVTVLEVCC 530

Query: 585 ----------LIKILLDYGDFDEALNLLD-------LVSLEGIPHDVLLYNTILKKACEK 627
                     L +++ + G   + LN  D       L SL   P  +   + ++ K   +
Sbjct: 531 KTSINKDTDNLTEVIQNEGSSSKVLNPTDSSTLSMMLKSLLDKPGGLSSVSQLIMKFARE 590

Query: 628 GRIDVIEFIIEQMHQNKVQPDPST 651
           G  D  +F+ E + +   +PD + 
Sbjct: 591 GSTDEAKFLYEHLTELGAKPDDTA 614



 Score = 48.9 bits (115), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 37/168 (22%), Positives = 74/168 (44%), Gaps = 3/168 (1%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           T  +VL    + ++  +A+ +F +M+   I P+   Y I++     +  ++ A  +   +
Sbjct: 347 TCASVLTLYYKNEDYSKALSLFSEMEQNKIVPDEVIYGILVRIYGKLGLYEDAQRMFEEI 406

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
            + G      TY A+ ++ ++  ++D AL +LD +    +      Y+ +L+    K  +
Sbjct: 407 DKAGLLSDEQTYVAMAQVHMNVQNYDRALQVLDAMRARNVKPSQFSYSALLRCHVAKEDV 466

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678
           D  E     +  N   PD   C+ +   Y+  G H     AL +L MR
Sbjct: 467 DAAEDTFRAL-SNYGPPDVFCCNDLLRLYMRLG-HLDKARAL-ILKMR 511



 Score = 46.2 bits (108), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 35/168 (20%), Positives = 73/168 (43%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TY  V+ S  +      AM+ F +MK     P  ATY+++I  C+     + A  L   M
Sbjct: 277 TYTVVIGSYAKEGMLEEAMDAFGEMKRRRFVPEEATYSLLISLCAKHGKGEEALGLYDEM 336

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
                 P   T  +++ +     D+ +AL+L   +    I  D ++Y  +++   + G  
Sbjct: 337 KVKSIVPSNYTCASVLTLYYKNEDYSKALSLFSEMEQNKIVPDEVIYGILVRIYGKLGLY 396

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678
           +  + + E++ +  +  D  T   +   ++N   ++ A++ L  +  R
Sbjct: 397 EDAQRMFEEIDKAGLLSDEQTYVAMAQVHMNVQNYDRALQVLDAMRAR 444



 Score = 45.4 bits (106), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 72/171 (42%), Gaps = 11/171 (6%)

Query: 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
           + SF+ +I+A   +     AE +  +MQ     P SHTY   IRA    +      E ++
Sbjct: 786 KISFNTMINAYATSGLHNEAEIIFQEMQKNNHVPDSHTYLALIRAYTEGKCYSKAEEAIQ 845

Query: 353 IMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDK-- 410
           +M ++N+ P  +    L     K  ++D A+ + +Q+     P    A LA C TM +  
Sbjct: 846 MMLRSNMTPSCTHFNHLISAFLKEGQIDEAQRMYNQMEEAGIP----ADLACCRTMMRMH 901

Query: 411 -----PERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVD 456
                 +  I  F    + L+PD       F L+ +     E G++   ++
Sbjct: 902 LDHGYVDDGILFFETACRLLKPDSFILSAAFHLYEHSGRESEAGDVLDAIN 952


>gi|297795313|ref|XP_002865541.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311376|gb|EFH41800.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 711

 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 77/364 (21%), Positives = 152/364 (41%), Gaps = 28/364 (7%)

Query: 299 VIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNN 358
           +I A   +  +  AE L  +++  G++P +  Y+  ++  V    L++   ++  M++  
Sbjct: 312 IISALANSGRTLEAEALFEELRQSGIKPRTKAYNALLKGYVKTGPLKDAELMVSEMEKRG 371

Query: 359 LKPQDSTIATLSVECSKALELDLAEALLDQISRC---TNPKPFSAFLAACDTMDKPERAI 415
           + P + T + L      A   + A  +L ++       N   FS  LA      + ++  
Sbjct: 372 VSPDEHTYSLLIDAYVNAGRWESARIVLKEMETGDVQPNSFVFSRLLAGYRDRGEWQKTF 431

Query: 416 KIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNI- 473
           ++  +M+   ++PD + Y ++   FG  N        F ++ S      IE D    N  
Sbjct: 432 QVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLS----EGIEPDRVTWNTL 487

Query: 474 -----QHS-HISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHR 527
                +H  HI  + + +A+   G +            P  T TYN +++S  + +    
Sbjct: 488 IDCHCKHGRHIVAEEMFEAMERRGCL------------PCAT-TYNIMINSYGDQERWDD 534

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
              +  +MK+ GI PN  T+  ++D       F  A   +  M   G  P +  Y ALI 
Sbjct: 535 MKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYNALIN 594

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
                G  ++A+N   +++ +G+   +L  N+++    E  R      +++ M +N V+P
Sbjct: 595 AYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLINAFGEDRRDAEAFAVLQYMKENGVKP 654

Query: 648 DPST 651
           D  T
Sbjct: 655 DVVT 658



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 86/354 (24%), Positives = 153/354 (43%), Gaps = 30/354 (8%)

Query: 333 GFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRC 392
           GF ++    R L    ++L + Q   L  + +T+ ++    + +     AEAL +++ R 
Sbjct: 280 GFAKSGDPSRAL----QLLGMAQATGLSAKTATLVSIISALANSGRTLEAEALFEEL-RQ 334

Query: 393 TNPKP----FSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYE 447
           +  KP    ++A L         + A  + ++M ++ + PD  TY LL   +  VNA   
Sbjct: 335 SGIKPRTKAYNALLKGYVKTGPLKDAELMVSEMEKRGVSPDEHTYSLLIDAY--VNAGRW 392

Query: 448 EGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPL 507
           E         + RI   EM+    ++Q +      LL      G  ++  Q   + K+  
Sbjct: 393 E---------SARIVLKEMETG--DVQPNSFVFSRLLAGYRDRGEWQKTFQVLKEMKSIG 441

Query: 508 GTPT---YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC-CSIIRCFKSA 563
             P    YN V+ +  +      AM  F +M + GI P+  T+N +IDC C   R    A
Sbjct: 442 VKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHI-VA 500

Query: 564 SALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKK 623
             +   M R G  P   TY  +I    D   +D+   LL  +  +GI  +V+ + T++  
Sbjct: 501 EEMFEAMERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDV 560

Query: 624 ACEKGRI-DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
             + GR  D IE  +E+M    ++P  +  + + + Y   G    A+ A +V++
Sbjct: 561 YGKSGRFNDAIE-CLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMT 613



 Score = 60.5 bits (145), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 69/330 (20%), Positives = 127/330 (38%), Gaps = 36/330 (10%)

Query: 381 LAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLF 439
           L EA L    +   P  ++A + AC   +  E+A+ + ++MRQ   + D   Y L+    
Sbjct: 185 LYEAFLLSQKQTLTPLTYNALIGACARNNDIEKALNLISRMRQDGYQSDFVNYSLVIQSL 244

Query: 440 GNVNAP--------YEEGNMFSQVDSAKRINAIEMDMARNN-----------IQHSHISM 480
              N          Y+E          + +N I M  A++             Q + +S 
Sbjct: 245 TRCNKIDSVMLQRLYKEIERDKLELDVQLVNDIIMGFAKSGDPSRALQLLGMAQATGLSA 304

Query: 481 K------------NLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRA 528
           K            N  + L AE +  EL Q    S     T  YN +L   V+      A
Sbjct: 305 KTATLVSIISALANSGRTLEAEALFEELRQ----SGIKPRTKAYNALLKGYVKTGPLKDA 360

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
             +  +M+  G+ P+  TY+++ID       ++SA  ++  M      P +  ++ L+  
Sbjct: 361 ELMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMETGDVQPNSFVFSRLLAG 420

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
             D G++ +   +L  +   G+  D   YN ++    +   +D      ++M    ++PD
Sbjct: 421 YRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPD 480

Query: 649 PSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678
             T + +   +   G H  A E  + +  R
Sbjct: 481 RVTWNTLIDCHCKHGRHIVAEEMFEAMERR 510


>gi|224135699|ref|XP_002322139.1| predicted protein [Populus trichocarpa]
 gi|222869135|gb|EEF06266.1| predicted protein [Populus trichocarpa]
          Length = 866

 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 114/507 (22%), Positives = 190/507 (37%), Gaps = 90/507 (17%)

Query: 192 NEVTYTELLKLAVWQKNLSAVHEIWEDYIKH-YSLSIFSLRKFVWSFTRLRDLKSAYETL 250
           NE  YT ++ L   +  L    +I+E+   H  S S+FS    + S+ R       YE  
Sbjct: 142 NEHIYTIMISLLGREGLLEKCSDIFEEMGAHGVSRSVFSYTALINSYGR----NGKYE-- 195

Query: 251 QHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSG 310
              V+L ++ ++   R S   L                      +++ VI++C R    G
Sbjct: 196 ---VSLELLERMKKERVSPSIL----------------------TYNTVINSCAR---GG 227

Query: 311 LAEQLML----QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGME-VLKIMQQNNLKPQDST 365
           L  + +L    +M+  G+QP   TY+  + A  S+RGL +  E V + M +  + P  +T
Sbjct: 228 LDWEGLLGLFAEMRHEGIQPDIVTYNTLLCA-CSNRGLGDEAEMVFRTMNEGGVVPDITT 286

Query: 366 IATLSVECSKALELDLAEALLDQISRCTNPKPFSAF---LAACDTMDKPERAIKIFAKMR 422
              L     K   LD    LL +++   N    S++   L A   +   E A  +F  M+
Sbjct: 287 YTYLVDTFGKLNRLDKVSELLKEMASTGNVPEISSYNVLLEAYARIGNIEDATGVFRLMQ 346

Query: 423 QK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMK 481
           +    P+  TY +L  L+G  +  Y+E                                 
Sbjct: 347 EAGCVPNAETYSILLGLYGK-HGRYDE--------------------------------- 372

Query: 482 NLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIP 541
                      +REL      S T     TYNT++    E       + +F  M    + 
Sbjct: 373 -----------VRELFLEMKVSNTEPDAATYNTLIDVFGEGGYFKEVVTLFHDMAEENVE 421

Query: 542 PNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNL 601
           PN  TY  +I  C        A  ++  M   G  P +  YT +I+       ++EAL  
Sbjct: 422 PNMETYEGLIFACGKGGLHDDAKKILLHMSEKGMIPSSKAYTGVIEAYGQAAMYEEALVT 481

Query: 602 LDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVN 661
           L+ ++  G    +  YNT++      G     E I+ +M    V  +  + + V  G+  
Sbjct: 482 LNTMNEMGSKPTIETYNTLIYMFARGGLYKETEAILLKMGDFGVARERDSFNGVIEGFRQ 541

Query: 662 CGFHNSAMEALQVLSMRMLCEEVSTLE 688
            G    A++A   +    L  +  TLE
Sbjct: 542 GGQFEEAIKAYVEMEKSRLVPDERTLE 568



 Score = 57.0 bits (136), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/211 (22%), Positives = 88/211 (41%), Gaps = 7/211 (3%)

Query: 479 SMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQM-KT 537
           ++ N L +L   G I   +  F   K  L    +  V     +  +  R++ +FK M + 
Sbjct: 80  TLINKLSSLPPRGSIARCLDVF---KNKLSLNDFALVFKEFAQRGDWQRSLRLFKHMQRQ 136

Query: 538 CGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDE 597
               PN   Y IMI         +  S +   M   G      +YTALI      G ++ 
Sbjct: 137 IWCKPNEHIYTIMISLLGREGLLEKCSDIFEEMGAHGVSRSVFSYTALINSYGRNGKYEV 196

Query: 598 ALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDV--IEFIIEQMHQNKVQPDPSTCHFV 655
           +L LL+ +  E +   +L YNT++  +C +G +D   +  +  +M    +QPD  T + +
Sbjct: 197 SLELLERMKKERVSPSILTYNTVI-NSCARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTL 255

Query: 656 FSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
                N G  + A    + ++   +  +++T
Sbjct: 256 LCACSNRGLGDEAEMVFRTMNEGGVVPDITT 286


>gi|357499785|ref|XP_003620181.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495196|gb|AES76399.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 559

 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 72/290 (24%), Positives = 121/290 (41%), Gaps = 39/290 (13%)

Query: 414 AIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNN 472
           A  ++++M  K + PD+ TY  L S F  V    +  ++F++             M   N
Sbjct: 231 AFDLYSEMVSKGISPDVVTYNALISGFCIVGKMKDATDLFNK-------------MIFEN 277

Query: 473 IQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAM 529
           I  +  +   L+     E  ++E   ++             TYN+++      +E ++A 
Sbjct: 278 INPNVYTFNILVDGFCKERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDRYCLVKEVNKAK 337

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
            IF  +   G+ PN  +Y+IMI     I+    A  L   M  +   P  +TY +LI  L
Sbjct: 338 HIFNTISQRGVNPNIHSYSIMIHGFCKIKKVDEAMNLFKEMHCNNIIPDVVTYNSLIDGL 397

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649
              G    AL L+D +   G+PHD + YN+IL   C+  ++D    ++ +M    +QPD 
Sbjct: 398 CKLGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDI 457

Query: 650 STCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDFEDLIL 699
            T   +  G                     LC+    LE+ R  FEDL++
Sbjct: 458 CTYTTLVDG---------------------LCKN-GRLEDARIVFEDLLV 485



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 80/365 (21%), Positives = 152/365 (41%), Gaps = 18/365 (4%)

Query: 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
           + S+  +I+   +   +  A QL+ ++    +QP+   Y+  I ++   + +    ++  
Sbjct: 177 KVSYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYS 236

Query: 353 IMQQNNLKPQDSTI-ATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKP 411
            M    + P   T  A +S  C      D  +     I    NP  ++ F    D   K 
Sbjct: 237 EMVSKGISPDVVTYNALISGFCIVGKMKDATDLFNKMIFENINPNVYT-FNILVDGFCKE 295

Query: 412 ER---AIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI-NAIEM 466
            R   A  + A M +Q ++PD+ TY          N+  +   +  +V+ AK I N I  
Sbjct: 296 RRLKEAKNVLAMMMKQGIKPDVFTY----------NSLMDRYCLVKEVNKAKHIFNTISQ 345

Query: 467 DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESH 526
                NI    I +    K    +  +    +  C++  P    TYN+++  L +  +  
Sbjct: 346 RGVNPNIHSYSIMIHGFCKIKKVDEAMNLFKEMHCNNIIP-DVVTYNSLIDGLCKLGKIS 404

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
            A+++  +M   G+P +  TYN ++D          A AL++ M  +G  P   TYT L+
Sbjct: 405 YALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDICTYTTLV 464

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
             L   G  ++A  + + + ++G   DV +Y  +++  C  G  D    ++ +M +N   
Sbjct: 465 DGLCKNGRLEDARIVFEDLLVKGYILDVNIYTAMIQGFCSHGLFDESLDLLSKMEENGCI 524

Query: 647 PDPST 651
           P+  T
Sbjct: 525 PNAVT 529



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 106/233 (45%), Gaps = 5/233 (2%)

Query: 450 NMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLG- 508
           N FSQ+       ++   + +   + + I++  L+K L  +G I + +Q F D    LG 
Sbjct: 115 NCFSQLGQNPLSFSVLAKILKMGYEPNVITLTTLIKGLCLKGQIHQALQ-FHDKVVALGF 173

Query: 509 ---TPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASA 565
                +Y T+++ L +  ++  A+++ +++    + PN   YN +ID    ++    A  
Sbjct: 174 HLNKVSYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFD 233

Query: 566 LVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKAC 625
           L S MV  G  P  +TY ALI      G   +A +L + +  E I  +V  +N ++   C
Sbjct: 234 LYSEMVSKGISPDVVTYNALISGFCIVGKMKDATDLFNKMIFENINPNVYTFNILVDGFC 293

Query: 626 EKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678
           ++ R+   + ++  M +  ++PD  T + +   Y      N A      +S R
Sbjct: 294 KERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQR 346



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 82/175 (46%)

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           YNT++ S+ + +  + A +++ +M + GI P+  TYN +I    I+   K A+ L + M+
Sbjct: 215 YNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYNALISGFCIVGKMKDATDLFNKMI 274

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
            +   P   T+  L+          EA N+L ++  +GI  DV  YN+++ + C    ++
Sbjct: 275 FENINPNVYTFNILVDGFCKERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDRYCLVKEVN 334

Query: 632 VIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
             + I   + Q  V P+  +   +  G+      + AM   + +    +  +V T
Sbjct: 335 KAKHIFNTISQRGVNPNIHSYSIMIHGFCKIKKVDEAMNLFKEMHCNNIIPDVVT 389



 Score = 50.4 bits (119), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 68/137 (49%)

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           +  +L SLV++      + + +QM+  GI  +    +I+I+C S +     + ++++ ++
Sbjct: 75  FGKILGSLVKSNHYSTVVSLHRQMEFNGITSDLVILSILINCFSQLGQNPLSFSVLAKIL 134

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
           + G+ P  +T T LIK L   G   +AL   D V   G   + + Y T++   C+ G+  
Sbjct: 135 KMGYEPNVITLTTLIKGLCLKGQIHQALQFHDKVVALGFHLNKVSYGTLINGLCKVGQTS 194

Query: 632 VIEFIIEQMHQNKVQPD 648
               ++ ++    VQP+
Sbjct: 195 AALQLLRRVDGKLVQPN 211


>gi|293332227|ref|NP_001169164.1| uncharacterized protein LOC100383014 [Zea mays]
 gi|223975267|gb|ACN31821.1| unknown [Zea mays]
          Length = 469

 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 82/371 (22%), Positives = 160/371 (43%), Gaps = 38/371 (10%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           ++++ ++H   R      A +L+ QM+  G++P+  TY   +    +   +   + VL+ 
Sbjct: 11  FTYNTLVHGVCRRGIVDEALRLVKQMERAGIRPNVVTYTMLVDGFCNASRVEEAVCVLER 70

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPK----PFSAFLAACDTMD 409
           M++  +   ++T  +L     + LE + A  +L +    ++P      +   L      D
Sbjct: 71  MKEKGVSATEATYRSLVHGAFRCLEKERAYRMLSEWIE-SDPTLHSIAYHTLLYCLSKND 129

Query: 410 KPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAP-----YEEGNMFSQVDS-AKRINA 463
             + A+++  KM +      R Y LL S   ++  P      E  ++   VD   K+   
Sbjct: 130 MDKEAVELAKKMSK------RGY-LLGSTTFSIVIPCAVKVLESSDLCELVDDFIKKGGN 182

Query: 464 IEMDMARNNIQHSHISMKNLLKA------LGAEGMIRELIQYFCDSKTPLGTPTYNTVLH 517
           +  DM    I+ S +  K++ KA      + ++G++  +              +YN V+ 
Sbjct: 183 LGFDMYIMIIK-SFLRCKDISKANKYFSQMVSDGLLSSV-------------ESYNIVID 228

Query: 518 SLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYP 577
              +A E  RA+E  K M+  G  PN  T+N +I+    +     A A + M++  G  P
Sbjct: 229 CFAKAGEVERALETIKVMQESGFSPNLVTFNTLINGYLKLGNVHDAKAFLKMVMEHGLMP 288

Query: 578 QTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFII 637
             +T+T+LI  L      D+A N    +S  G+  +V  YN ++   C  G +     ++
Sbjct: 289 DVITFTSLIDGLCHTHQLDDAFNCFSEMSEWGVRPNVQTYNVLIHGLCSAGHVSKAIELL 348

Query: 638 EQMHQNKVQPD 648
            +M  + + PD
Sbjct: 349 NKMKMDGITPD 359



 Score = 70.5 bits (171), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 116/540 (21%), Positives = 191/540 (35%), Gaps = 115/540 (21%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y  ++  +C+ G ++EA  L+  + ER GI P +  Y   +        +  A   L+ M
Sbjct: 13  YNTLVHGVCRRGIVDEALRLVKQM-ERAGIRPNVVTYTMLVDGFCNASRVEEAVCVLERM 71

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH-YSLSIFSLRKFVWSFTRLRDL 243
             + V   E TY  L+  A         + +  ++I+   +L   +    ++  ++    
Sbjct: 72  KEKGVSATEATYRSLVHGAFRCLEKERAYRMLSEWIESDPTLHSIAYHTLLYCLSKNDMD 131

Query: 244 KSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWS-----FSD 298
           K A E     +A  M  + Y+       L S+   I IP      +KVL  S       D
Sbjct: 132 KEAVE-----LAKKMSKRGYL-------LGSTTFSIVIPC----AVKVLESSDLCELVDD 175

Query: 299 VIHACG---------------RTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRG 343
            I   G               R ++   A +   QM S GL  S  +Y+  I        
Sbjct: 176 FIKKGGNLGFDMYIMIIKSFLRCKDISKANKYFSQMVSDGLLSSVESYNIVIDCFAKAGE 235

Query: 344 LRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLA 403
           +   +E +K+MQ++   P   T  TL     K   +  A+A L  +              
Sbjct: 236 VERALETIKVMQESGFSPNLVTFNTLINGYLKLGNVHDAKAFLKMV-------------- 281

Query: 404 ACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINA 463
                            M   L PD+ T+  L     + +   +  N FS++        
Sbjct: 282 -----------------MEHGLMPDVITFTSLIDGLCHTHQLDDAFNCFSEMSEWG---- 320

Query: 464 IEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQ 523
                 R N+Q                                    TYN ++H L  A 
Sbjct: 321 -----VRPNVQ------------------------------------TYNVLIHGLCSAG 339

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
              +A+E+  +MK  GI P+A ++N  I     +R  + A  L + M R G  P + TY 
Sbjct: 340 HVSKAIELLNKMKMDGITPDAYSFNAPILSFCRMRKIEKAQKLFNDMSRYGVSPDSYTYN 399

Query: 584 ALIKILLDYGDFDEALN-LLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642
           ALIK L D    DEA   +L + S+  I      Y  ++    + GR       + ++H+
Sbjct: 400 ALIKALCDERRVDEAKEIILAMESISCIGTKQHTYWPVVGALTKMGRFSEAGMFMNKLHR 459



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 61/281 (21%), Positives = 122/281 (43%), Gaps = 19/281 (6%)

Query: 412 ERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           + A+++  +M R  +RP++ TY +L   F N           S+V+ A  +  +E  M  
Sbjct: 27  DEALRLVKQMERAGIRPNVVTYTMLVDGFCNA----------SRVEEA--VCVLER-MKE 73

Query: 471 NNIQHSHISMKNLL----KALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESH 526
             +  +  + ++L+    + L  E   R L ++  +S   L +  Y+T+L+ L +     
Sbjct: 74  KGVSATEATYRSLVHGAFRCLEKERAYRMLSEWI-ESDPTLHSIAYHTLLYCLSKNDMDK 132

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
            A+E+ K+M   G    + T++I+I C   +        LV   ++ G       Y  +I
Sbjct: 133 EAVELAKKMSKRGYLLGSTTFSIVIPCAVKVLESSDLCELVDDFIKKGGNLGFDMYIMII 192

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
           K  L   D  +A      +  +G+   V  YN ++    + G ++     I+ M ++   
Sbjct: 193 KSFLRCKDISKANKYFSQMVSDGLLSSVESYNIVIDCFAKAGEVERALETIKVMQESGFS 252

Query: 647 PDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTL 687
           P+  T + + +GY+  G  + A   L+++    L  +V T 
Sbjct: 253 PNLVTFNTLINGYLKLGNVHDAKAFLKMVMEHGLMPDVITF 293



 Score = 43.9 bits (102), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 41/93 (44%)

Query: 570 MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
           M  DG  P   TY  L+  +   G  DEAL L+  +   GI  +V+ Y  ++   C   R
Sbjct: 1   MPADGCRPDCFTYNTLVHGVCRRGIVDEALRLVKQMERAGIRPNVVTYTMLVDGFCNASR 60

Query: 630 IDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNC 662
           ++    ++E+M +  V    +T   +  G   C
Sbjct: 61  VEEAVCVLERMKEKGVSATEATYRSLVHGAFRC 93


>gi|242067038|ref|XP_002454808.1| hypothetical protein SORBIDRAFT_04g037860 [Sorghum bicolor]
 gi|241934639|gb|EES07784.1| hypothetical protein SORBIDRAFT_04g037860 [Sorghum bicolor]
          Length = 951

 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 130/647 (20%), Positives = 262/647 (40%), Gaps = 84/647 (12%)

Query: 90  FFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLG 149
           FFH       S D    +E    M+   +  N   Y  ++   CKG  ++EA +L Y   
Sbjct: 232 FFH-------SGDADAALEVVERMKADGVEPNVVTYTALIGEYCKGKGMDEAFSL-YEGM 283

Query: 150 ERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELL-KLAVWQKN 208
            R G+ P +   ++ +    +      A      MD   V  N VTY  L+  LA  ++ 
Sbjct: 284 VRSGVLPDVVTLSALVDGLCRDGQFSEAYALFREMDKIGVAPNHVTYCTLIDSLAKARRG 343

Query: 209 LSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTS 268
             ++  + E   +   + +      +    +   ++ A + L+H  +  +    ++  T 
Sbjct: 344 SESLGLLGEMVSRGVVMDLVMYTALMDRLGKEGKIEEAKDVLRHAQSDNITPN-FVTYTV 402

Query: 269 --EGRLRSSRLD----IPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSL 322
             +   R+  +D    + + +    V+  +  +FS +I+   +    G A   M +M+  
Sbjct: 403 LVDAHCRAGNIDGAEQVLLQMEEKSVIPNV-VTFSSIINGLVKRGCLGKAADYMRKMKDS 461

Query: 323 GLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL--------SVECS 374
           G+ P+  TY   I      +G    ++V + M    ++  +  + +L        ++E +
Sbjct: 462 GIAPNVVTYGTLIDGFFKFQGQEAALDVYRDMLHEGVEANNFVVDSLVNGLRKNGNIEGA 521

Query: 375 KALELDLAEA--LLDQISRCT------------------------NPKP----FSAFLAA 404
           +AL  D+ E   LLD ++  T                        N  P    ++ F+  
Sbjct: 522 EALFKDMDERGLLLDHVNYTTLMDGLFKTGNMPAAFKVGQELMEKNLSPDAVVYNVFINC 581

Query: 405 CDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINA 463
             T+ K   A     +MR   L PD  TY  + +      A   EG       ++K +  
Sbjct: 582 LCTLGKFSEAKSFLKEMRNTGLEPDQATYNTMIA------ARCREGK------TSKALKL 629

Query: 464 IEMDMARNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLV 520
           ++ +M RN+I+ + I+   L+  L   G++++   L+     +     + T+  VL +  
Sbjct: 630 LK-EMKRNSIKPNLITYTTLVVGLLEAGVVKKAKFLLNEMASAGFAPTSLTHQRVLQACS 688

Query: 521 EAQESHRAMEIFKQMKTCGIPPNAATYNIMID--CCSIIRCFKSASALVSMMVRDGFYPQ 578
            ++     +EI + M   G+  +   YN ++   CC  +   ++A+ ++  M+  G  P 
Sbjct: 689 GSRRPDVILEIHELMMGAGLHADITVYNTLVHVLCCHGMA--RNATVVLDEMLTRGIAPD 746

Query: 579 TMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIE 638
           T+T+ ALI         D A  +   +  +G+  ++  +NT+L      GRI   + ++ 
Sbjct: 747 TITFNALILGHCKSSHLDNAFAIYAQMLHQGLSPNIATFNTLLGGLESAGRIGEADTVLS 806

Query: 639 QMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVS 685
            M +  ++P+  T   + +GY        A ++ +V ++R+ CE VS
Sbjct: 807 DMKKVGLEPNNLTYDILVTGY--------AKKSNKVEALRLYCEMVS 845



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 101/530 (19%), Positives = 205/530 (38%), Gaps = 26/530 (4%)

Query: 131 ALCKGGYLEEASNLIYFLGERYGIYPILPV-YNSFLGACAKLHSMVHANLCLDLMDSRMV 189
            LC+ G + EA+ L   L    GI  +  V +N+ +    K+  M  A   ++ M ++ V
Sbjct: 159 GLCRTGLVGEAAALAEMLVRGRGIDGLDVVGWNALIDGYCKVQDMAAALAVVERMTTQGV 218

Query: 190 GKNEVTYTELLKLAVWQKNLSAVHEIWEDY-IKHYSLSIFSLRKFVWSFTRLRDLKSAYE 248
             + V Y  L+       +  A  E+ E         ++ +    +  + + + +  A+ 
Sbjct: 219 ALDVVGYNSLVAGFFHSGDADAALEVVERMKADGVEPNVVTYTALIGEYCKGKGMDEAFS 278

Query: 249 TLQHMVALAMMGKLY-INRTSEGRLRSSRLDIPIPL-NALPVMKVL--RWSFSDVIHACG 304
             + MV   ++  +  ++   +G  R  +      L   +  + V     ++  +I +  
Sbjct: 279 LYEGMVRSGVLPDVVTLSALVDGLCRDGQFSEAYALFREMDKIGVAPNHVTYCTLIDSLA 338

Query: 305 RTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDS 364
           + +    +  L+ +M S G+      Y   +  +  +  +    +VL+  Q +N+ P   
Sbjct: 339 KARRGSESLGLLGEMVSRGVVMDLVMYTALMDRLGKEGKIEEAKDVLRHAQSDNITPNFV 398

Query: 365 TIATLSVECSKALELDLAEALLDQI---SRCTNPKPFSAFLAACDTMDKPERAIKIFAKM 421
           T   L     +A  +D AE +L Q+   S   N   FS+ +          +A     KM
Sbjct: 399 TYTVLVDAHCRAGNIDGAEQVLLQMEEKSVIPNVVTFSSIINGLVKRGCLGKAADYMRKM 458

Query: 422 RQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISM 480
           +   + P++ TY  L   F      ++     + +D       +  DM    ++ ++  +
Sbjct: 459 KDSGIAPNVVTYGTLIDGF------FKFQGQEAALD-------VYRDMLHEGVEANNFVV 505

Query: 481 KNLLKALGAEGMIRELIQYFCDSKTP---LGTPTYNTVLHSLVEAQESHRAMEIFKQMKT 537
            +L+  L   G I      F D       L    Y T++  L +      A ++ +++  
Sbjct: 506 DSLVNGLRKNGNIEGAEALFKDMDERGLLLDHVNYTTLMDGLFKTGNMPAAFKVGQELME 565

Query: 538 CGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDE 597
             + P+A  YN+ I+C   +  F  A + +  M   G  P   TY  +I      G   +
Sbjct: 566 KNLSPDAVVYNVFINCLCTLGKFSEAKSFLKEMRNTGLEPDQATYNTMIAARCREGKTSK 625

Query: 598 ALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
           AL LL  +    I  +++ Y T++    E G +   +F++ +M      P
Sbjct: 626 ALKLLKEMKRNSIKPNLITYTTLVVGLLEAGVVKKAKFLLNEMASAGFAP 675



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 110/566 (19%), Positives = 223/566 (39%), Gaps = 65/566 (11%)

Query: 108 ETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGA 167
           +  R  +   I  N   Y +++ A C+ G ++ A  ++  + E+  + P +  ++S +  
Sbjct: 383 DVLRHAQSDNITPNFVTYTVLVDAHCRAGNIDGAEQVLLQMEEK-SVIPNVVTFSSIING 441

Query: 168 CAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYSLS 226
             K   +  A   +  M    +  N VTY  L+      +   A  +++ D + +    +
Sbjct: 442 LVKRGCLGKAADYMRKMKDSGIAPNVVTYGTLIDGFFKFQGQEAALDVYRDMLHEGVEAN 501

Query: 227 IFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTS--EGRLRSSRLDIPIPLN 284
            F +   V    +  +++ A    + M    ++   ++N T+  +G  ++  +     + 
Sbjct: 502 NFVVDSLVNGLRKNGNIEGAEALFKDMDERGLLLD-HVNYTTLMDGLFKTGNMPAAFKVG 560

Query: 285 A------LPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAI 338
                  L    V+   F + +   G+      A+  + +M++ GL+P   TY+  I A 
Sbjct: 561 QELMEKNLSPDAVVYNVFINCLCTLGKFSE---AKSFLKEMRNTGLEPDQATYNTMIAAR 617

Query: 339 VSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT-NPKP 397
             +      +++LK M++N++KP   T  TL V   +A  +  A+ LL++++     P  
Sbjct: 618 CREGKTSKALKLLKEMKRNSIKPNLITYTTLVVGLLEAGVVKKAKFLLNEMASAGFAPTS 677

Query: 398 FS--AFLAACDTMDKPERAIKIFA-KMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQ 454
            +    L AC    +P+  ++I    M   L  DI  Y  L  +                
Sbjct: 678 LTHQRVLQACSGSRRPDVILEIHELMMGAGLHADITVYNTLVHVL--------------- 722

Query: 455 VDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNT 514
                        MARN    + + +  +L      G+  + I             T+N 
Sbjct: 723 ---------CCHGMARN----ATVVLDEML----TRGIAPDTI-------------TFNA 752

Query: 515 VLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDG 574
           ++    ++     A  I+ QM   G+ PN AT+N ++           A  ++S M + G
Sbjct: 753 LILGHCKSSHLDNAFAIYAQMLHQGLSPNIATFNTLLGGLESAGRIGEADTVLSDMKKVG 812

Query: 575 FYPQTMTYTALIKILLDYGDFDEALNLL-DLVSLEGIPHDVLLYNTILKKACEKGRIDVI 633
             P  +TY  L+       +  EAL L  ++VS   IP     YN+++    + G ++  
Sbjct: 813 LEPNNLTYDILVTGYAKKSNKVEALRLYCEMVSKGFIPK-ASTYNSLMSDFAKAGMMNQA 871

Query: 634 EFIIEQMHQNKVQPDPSTCHFVFSGY 659
           + +  +M +  V    ST   + +G+
Sbjct: 872 KELFSEMKRRGVLHTSSTYDILLNGW 897



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 68/301 (22%), Positives = 131/301 (43%), Gaps = 26/301 (8%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL-S 370
           A+ L+ +M S G  P+S T+   ++A    R     +E+ ++M    L    +   TL  
Sbjct: 661 AKFLLNEMASAGFAPTSLTHQRVLQACSGSRRPDVILEIHELMMGAGLHADITVYNTLVH 720

Query: 371 VECSKALELDLAEALLDQISRCTNPKP--FSAFLAACDTMDKPERAIKIFAKM-RQKLRP 427
           V C   +  +    L + ++R   P    F+A +         + A  I+A+M  Q L P
Sbjct: 721 VLCCHGMARNATVVLDEMLTRGIAPDTITFNALILGHCKSSHLDNAFAIYAQMLHQGLSP 780

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI---NAIEMDMARNNIQHSHISMKNLL 484
           +I T+  L                   ++SA RI   + +  DM +  ++ ++++   L+
Sbjct: 781 NIATFNTLLG----------------GLESAGRIGEADTVLSDMKKVGLEPNNLTYDILV 824

Query: 485 KALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIP 541
                +    E ++ +C+  +    P   TYN+++    +A   ++A E+F +MK  G+ 
Sbjct: 825 TGYAKKSNKVEALRLYCEMVSKGFIPKASTYNSLMSDFAKAGMMNQAKELFSEMKRRGVL 884

Query: 542 PNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNL 601
             ++TY+I+++  S +R       L+  M   GF P   T +++ +     G   EA  L
Sbjct: 885 HTSSTYDILLNGWSKLRNGIEVRILLKDMKELGFKPSKGTISSMSRAFSRPGMTGEARRL 944

Query: 602 L 602
           L
Sbjct: 945 L 945



 Score = 53.5 bits (127), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 74/394 (18%), Positives = 151/394 (38%), Gaps = 22/394 (5%)

Query: 289 MKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGM 348
           + V+ W+   +I    + Q+   A  ++ +M + G+      Y+  +            +
Sbjct: 185 LDVVGWN--ALIDGYCKVQDMAAALAVVERMTTQGVALDVVGYNSLVAGFFHSGDADAAL 242

Query: 349 EVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTM 408
           EV++ M+ + ++P   T   L  E  K   +D A +L + + R           A  D +
Sbjct: 243 EVVERMKADGVEPNVVTYTALIGEYCKGKGMDEAFSLYEGMVRSGVLPDVVTLSALVDGL 302

Query: 409 DKPERAIKIFAKMRQ----KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAI 464
            +  +  + +A  R+     + P+  TY  L           E   +  ++ S      +
Sbjct: 303 CRDGQFSEAYALFREMDKIGVAPNHVTYCTLIDSLAKARRGSESLGLLGEMVS----RGV 358

Query: 465 EMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVE 521
            MD+         +    L+  LG EG I E       +++   TP   TY  ++ +   
Sbjct: 359 VMDL---------VMYTALMDRLGKEGKIEEAKDVLRHAQSDNITPNFVTYTVLVDAHCR 409

Query: 522 AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMT 581
           A     A ++  QM+   + PN  T++ +I+      C   A+  +  M   G  P  +T
Sbjct: 410 AGNIDGAEQVLLQMEEKSVIPNVVTFSSIINGLVKRGCLGKAADYMRKMKDSGIAPNVVT 469

Query: 582 YTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMH 641
           Y  LI     +   + AL++   +  EG+  +  + ++++    + G I+  E + + M 
Sbjct: 470 YGTLIDGFFKFQGQEAALDVYRDMLHEGVEANNFVVDSLVNGLRKNGNIEGAEALFKDMD 529

Query: 642 QNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
           +  +  D      +  G    G   +A +  Q L
Sbjct: 530 ERGLLLDHVNYTTLMDGLFKTGNMPAAFKVGQEL 563


>gi|46390363|dbj|BAD15828.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|215697127|dbj|BAG91121.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 554

 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 89/389 (22%), Positives = 148/389 (38%), Gaps = 82/389 (21%)

Query: 299 VIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNN 358
           V   CG  Q    A +L+ +M    ++P ++TY+  IR +       N + VL  M +  
Sbjct: 133 VAGYCGAGQLDA-ARRLVAEMP---VEPDAYTYNTLIRGLCGRGRTANALAVLDEMLRRR 188

Query: 359 LKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIF 418
             P   T                                ++  L A       ++A+K+ 
Sbjct: 189 CVPDVVT--------------------------------YTILLEATCKRSGYKQAMKLL 216

Query: 419 AKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSH 477
            +MR K   PDI TY ++      VN   +EG    +VD     +AIE            
Sbjct: 217 DEMRDKGCTPDIVTYNVV------VNGICQEG----RVD-----DAIEF----------- 250

Query: 478 ISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKT 537
                          ++ L  Y C+  T     +YN VL  L  A+    A E+  +M  
Sbjct: 251 ---------------LKNLPSYGCEPNTV----SYNIVLKGLCTAERWEDAEELMGEMGQ 291

Query: 538 CGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDE 597
            G PPN  T+N++I         + A  ++  + + G  P +++Y  L+         D+
Sbjct: 292 KGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDK 351

Query: 598 ALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFS 657
           A+  LDL+   G   D++ YNT+L   C  G +DV   ++ Q+      P   + + V  
Sbjct: 352 AMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVID 411

Query: 658 GYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           G    G    A+E L  +  + L  ++ T
Sbjct: 412 GLTKAGKTKEALELLNEMVSKGLQPDIIT 440



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 88/383 (22%), Positives = 153/383 (39%), Gaps = 25/383 (6%)

Query: 304 GRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQD 363
           GRT N+      ML+ + +   P   TY   + A     G +  M++L  M+     P  
Sbjct: 172 GRTANALAVLDEMLRRRCV---PDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDI 228

Query: 364 STI-ATLSVECSKALELDLAEALLDQISRCTNPK--PFSAFLAACDTMDKPERAIKIFAK 420
            T    ++  C +    D  E L +  S    P    ++  L    T ++ E A ++  +
Sbjct: 229 VTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGE 288

Query: 421 MRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHIS 479
           M QK   P++ T+ +L S             +  Q+    +       ++ N + H+   
Sbjct: 289 MGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQI---PKYGCTPNSLSYNPLLHAFCK 345

Query: 480 MKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCG 539
            K + KA+     +  ++   C         +YNT+L +L  + E   A+E+  Q+K  G
Sbjct: 346 QKKMDKAMA---FLDLMVSRGCYPDIV----SYNTLLTALCRSGEVDVAVELLHQLKDKG 398

Query: 540 IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEAL 599
             P   +YN +ID  +     K A  L++ MV  G  P  +TY+ +   L      ++A+
Sbjct: 399 CAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAI 458

Query: 600 NLLDLVSLEGIPHDVLLYNTILKKACEK----GRIDVIEFIIEQMHQNKVQPDPSTCHFV 655
                V   GI  + +LYN I+   C++      ID+  ++I     N   P+ ST   +
Sbjct: 459 RAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMI----GNGCMPNESTYTIL 514

Query: 656 FSGYVNCGFHNSAMEALQVLSMR 678
             G    G    A + L  L  R
Sbjct: 515 IEGLAYEGLIKEARDLLDELCSR 537



 Score = 60.1 bits (144), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 76/316 (24%), Positives = 129/316 (40%), Gaps = 28/316 (8%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL-S 370
           A + +  + S G +P++ +Y+  ++ + +     +  E++  M Q    P   T   L S
Sbjct: 247 AIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLIS 306

Query: 371 VECSKALELDLAEALLDQISR--CT-NPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LR 426
             C K L ++ A  +L+QI +  CT N   ++  L A     K ++A+     M  +   
Sbjct: 307 FLCRKGL-VEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCY 365

Query: 427 PDIRTYELLFSLF---GNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNL 483
           PDI +Y  L +     G V+   E  +       A  +                IS   +
Sbjct: 366 PDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVL----------------ISYNTV 409

Query: 484 LKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGI 540
           +  L   G  +E ++   +  +    P   TY+T+   L        A+  F +++  GI
Sbjct: 410 IDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGI 469

Query: 541 PPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALN 600
            PN   YN +I      R   SA  L + M+ +G  P   TYT LI+ L   G   EA +
Sbjct: 470 RPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARD 529

Query: 601 LLDLVSLEGIPHDVLL 616
           LLD +   G+    L+
Sbjct: 530 LLDELCSRGVVRKSLI 545



 Score = 47.8 bits (112), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 63/275 (22%), Positives = 102/275 (37%), Gaps = 42/275 (15%)

Query: 104 LFVMETWRMMEE--KEIGL-----NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYP 156
           L   E W   EE   E+G      N   + +++  LC+ G +E A  ++  +  +YG  P
Sbjct: 273 LCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQI-PKYGCTP 331

Query: 157 ILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIW 216
               YN  L A  K   M  A   LDLM SR    + V+Y  LL        +    E+ 
Sbjct: 332 NSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELL 391

Query: 217 EDYI-KHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRT-SEGRLRS 274
                K  +  + S    +   T+    K A E L  MV+  +   +    T + G  R 
Sbjct: 392 HQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCRE 451

Query: 275 SRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGF 334
            R++                   D I A G+ Q+             +G++P++  Y+  
Sbjct: 452 DRIE-------------------DAIRAFGKVQD-------------MGIRPNTVLYNAI 479

Query: 335 IRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL 369
           I  +   R   + +++   M  N   P +ST   L
Sbjct: 480 ILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTIL 514


>gi|30689969|ref|NP_197945.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|357528836|sp|Q8GZ63.2|PP397_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g25630
 gi|332006092|gb|AED93475.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 574

 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 85/384 (22%), Positives = 165/384 (42%), Gaps = 45/384 (11%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           F+ VI+A   + N   A Q +L+M+ LGL P++ TY+  I+      G+           
Sbjct: 118 FNAVINAFSESGNMEDAVQALLKMKELGLNPTTSTYNTLIKGY----GIAG--------- 164

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAI 415
               KP+ S         S+ L+L L E  +D      N + F+  + A     K E A 
Sbjct: 165 ----KPERS---------SELLDLMLEEGNVDV---GPNIRTFNVLVQAWCKKKKVEEAW 208

Query: 416 KIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQ 474
           ++  KM +  +RPD  TY  + + +       ++G    + +S      +  + A+ N +
Sbjct: 209 EVVKKMEECGVRPDTVTYNTIATCY------VQKGETV-RAESEVVEKMVMKEKAKPNGR 261

Query: 475 HSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEI 531
              I +    +    EG +R+    ++   + +       +N++++  VE  +     E+
Sbjct: 262 TCGIVVGGYCR----EGRVRDGLRFVRRMKEMRVEANLVVFNSLINGFVEVMDRDGIDEV 317

Query: 532 FKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLD 591
              MK C +  +  TY+ +++  S     + A+ +   MV+ G  P    Y+ L K  + 
Sbjct: 318 LTLMKECNVKADVITYSTVMNAWSSAGYMEKAAQVFKEMVKAGVKPDAHAYSILAKGYVR 377

Query: 592 YGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
             +  +A  LL+ + +E  P +V+++ T++   C  G +D    +  +M +  V P+  T
Sbjct: 378 AKEPKKAEELLETLIVESRP-NVVIFTTVISGWCSNGSMDDAMRVFNKMCKFGVSPNIKT 436

Query: 652 CHFVFSGYVNCGFHNSAMEALQVL 675
              +  GY+       A E LQ++
Sbjct: 437 FETLMWGYLEVKQPWKAEEVLQMM 460



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/187 (21%), Positives = 82/187 (43%), Gaps = 38/187 (20%)

Query: 515 VLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDG 574
           +++ L+E    H A  +FK +   G  P+  +Y  ++   ++ + + S S++VS + + G
Sbjct: 51  LMNVLIERGRPHEAQTVFKTLAETGHRPSLISYTTLLAAMTVQKQYGSISSIVSEVEQSG 110

Query: 575 ------FY-----------------------------PQTMTYTALIKILLDYGDFDEAL 599
                 F+                             P T TY  LIK     G  + + 
Sbjct: 111 TKLDSIFFNAVINAFSESGNMEDAVQALLKMKELGLNPTTSTYNTLIKGYGIAGKPERSS 170

Query: 600 NLLDLVSLEG---IPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVF 656
            LLDL+  EG   +  ++  +N +++  C+K +++    ++++M +  V+PD  T + + 
Sbjct: 171 ELLDLMLEEGNVDVGPNIRTFNVLVQAWCKKKKVEEAWEVVKKMEECGVRPDTVTYNTIA 230

Query: 657 SGYVNCG 663
           + YV  G
Sbjct: 231 TCYVQKG 237


>gi|147828617|emb|CAN73046.1| hypothetical protein VITISV_008668 [Vitis vinifera]
          Length = 477

 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 83/326 (25%), Positives = 141/326 (43%), Gaps = 32/326 (9%)

Query: 357 NNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDT---MDKPER 413
           N  +    T + +      A    LAE LL ++           FL+ C     + KP  
Sbjct: 44  NGFRHSHQTFSLMISRLVSANHFRLAEELLCRMKEEKCNITEDIFLSICRAYGRVHKPLD 103

Query: 414 AIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNN 472
           A+++F KM++ +  P  ++Y  +F++    N          Q+  A R      +M    
Sbjct: 104 AVRVFRKMKEYECEPSQKSYITVFAILVGEN----------QLKLALRFYRYMREMG--- 150

Query: 473 IQHSHISMKNLLKAL--------GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQE 524
           I  S  S+  L+KAL         A  + RE+    C    P  + TY T++  L    +
Sbjct: 151 IPPSVASLNVLIKALCKNSGTMDAALRIFREMPNRGC----PPHSYTYGTLIXGLCRLGK 206

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
              A E+FK+M+T    P   TY  +I      +   SA  L+  M   G  P   TY++
Sbjct: 207 IGEAKELFKEMETKACSPTVVTYXSLIHGLCQSKDLDSAIRLLEEMASKGIKPNVFTYSS 266

Query: 585 LIKILLDYGDFDEALNLLD-LVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
           L+      G    AL LLD +VS   +P +++ Y+T++   C++G++     I+++M   
Sbjct: 267 LMDGHCKSGCSSRALELLDMMVSRRHLP-NMITYSTLVHGLCKEGKLQEAVEILDRMKLQ 325

Query: 644 KVQPDPSTCHFVFSGYVN-CGFHNSA 668
            ++PD      + SG+ + C FH +A
Sbjct: 326 GLRPDAGLYGKIISGFCDICKFHEAA 351



 Score = 65.9 bits (159), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 81/379 (21%), Positives = 160/379 (42%), Gaps = 29/379 (7%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           F  +  A GR      A ++  +M+    +PS  +Y      +V +  L+  +   + M+
Sbjct: 88  FLSICRAYGRVHKPLDAVRVFRKMKEYECEPSQKSYITVFAILVGENQLKLALRFYRYMR 147

Query: 356 QNNLKPQDSTIATL-SVECSKALELDLAEALLDQI-SRCTNPKPFS--AFLAACDTMDKP 411
           +  + P  +++  L    C  +  +D A  +  ++ +R   P  ++    +     + K 
Sbjct: 148 EMGIPPSVASLNVLIKALCKNSGTMDAALRIFREMPNRGCPPHSYTYGTLIXGLCRLGKI 207

Query: 412 ERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
             A ++F +M  K   P + TY  L  + G   +          +DSA R+  +E +MA 
Sbjct: 208 GEAKELFKEMETKACSPTVVTYXSL--IHGLCQS--------KDLDSAIRL--LE-EMAS 254

Query: 471 NNIQHSHISMKNLLKA---LGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHR 527
             I+ +  +  +L+      G      EL+      +      TY+T++H L +  +   
Sbjct: 255 KGIKPNVFTYSSLMDGHCKSGCSSRALELLDMMVSRRHLPNMITYSTLVHGLCKEGKLQE 314

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDC-CSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
           A+EI  +MK  G+ P+A  Y  +I   C I + F  A+  +  MV  G  P  +T++  +
Sbjct: 315 AVEILDRMKLQGLRPDAGLYGKIISGFCDICK-FHEAANFLDEMVLGGISPNRLTWSLHV 373

Query: 587 KI--LLDYGDFDE----ALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQM 640
           +I  ++  G   E    A  L   +   GI  D   +++++   C KG +     ++++M
Sbjct: 374 RIHNIVVQGLCTEHPNRAFQLYLSMRTRGISIDAKTFDSLVNYFCNKGDLHKAAHLVDEM 433

Query: 641 HQNKVQPDPSTCHFVFSGY 659
             +   PD  T + V   +
Sbjct: 434 VLDGCIPDEXTWNAVVCAF 452



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 65/316 (20%), Positives = 126/316 (39%), Gaps = 45/316 (14%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           +++  +I    R    G A++L  +M++    P+  TY   I  +   + L + + +L+ 
Sbjct: 192 YTYGTLIXGLCRLGKIGEAKELFKEMETKACSPTVVTYXSLIHGLCQSKDLDSAIRLLEE 251

Query: 354 MQQNNLKPQDSTIATL-SVECSKALELDLAEALLDQISRCTNPK--PFSAFLAACDTMDK 410
           M    +KP   T ++L    C         E L   +SR   P    +S  +       K
Sbjct: 252 MASKGIKPNVFTYSSLMDGHCKSGCSSRALELLDMMVSRRHLPNMITYSTLVHGLCKEGK 311

Query: 411 PERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
            + A++I  +M+ Q LRPD   Y  + S F ++   +E  N   ++        +   ++
Sbjct: 312 LQEAVEILDRMKLQGLRPDAGLYGKIISGFCDICKFHEAANFLDEM--------VLGGIS 363

Query: 470 RNNIQHS-HISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRA 528
            N +  S H+ + N+            ++Q  C                     +  +RA
Sbjct: 364 PNRLTWSLHVRIHNI------------VVQGLC--------------------TEHPNRA 391

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
            +++  M+T GI  +A T++ +++          A+ LV  MV DG  P   T+ A++  
Sbjct: 392 FQLYLSMRTRGISIDAKTFDSLVNYFCNKGDLHKAAHLVDEMVLDGCIPDEXTWNAVVCA 451

Query: 589 LLDYGDFDEALNLLDL 604
             D     E+  L+ +
Sbjct: 452 FWDRRKVRESAELVQV 467



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/260 (21%), Positives = 110/260 (42%), Gaps = 11/260 (4%)

Query: 439 FGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQ 498
           +G V+ P +   +F      +++   E + +    Q S+I++  +L       +     +
Sbjct: 95  YGRVHKPLDAVRVF------RKMKEYECEPS----QKSYITVFAILVGENQLKLALRFYR 144

Query: 499 YFCDSKTPLGTPTYNTVLHSLVEAQES-HRAMEIFKQMKTCGIPPNAATYNIMIDCCSII 557
           Y  +   P    + N ++ +L +   +   A+ IF++M   G PP++ TY  +I     +
Sbjct: 145 YMREMGIPPSVASLNVLIKALCKNSGTMDAALRIFREMPNRGCPPHSYTYGTLIXGLCRL 204

Query: 558 RCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLY 617
                A  L   M      P  +TY +LI  L    D D A+ LL+ ++ +GI  +V  Y
Sbjct: 205 GKIGEAKELFKEMETKACSPTVVTYXSLIHGLCQSKDLDSAIRLLEEMASKGIKPNVFTY 264

Query: 618 NTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSM 677
           ++++   C+ G       +++ M   +  P+  T   +  G    G    A+E L  + +
Sbjct: 265 SSLMDGHCKSGCSSRALELLDMMVSRRHLPNMITYSTLVHGLCKEGKLQEAVEILDRMKL 324

Query: 678 RMLCEEVSTLEEKRSDFEDL 697
           + L  +     +  S F D+
Sbjct: 325 QGLRPDAGLYGKIISGFCDI 344



 Score = 42.7 bits (99), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 76/382 (19%), Positives = 144/382 (37%), Gaps = 42/382 (10%)

Query: 71  ASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQ 130
           A  LL  +     ++  D F  I     R   PL  +  +R M+E E   + K Y+ +  
Sbjct: 69  AEELLCRMKEEKCNITEDIFLSICRAYGRVHKPLDAVRVFRKMKEYECEPSQKSYITVFA 128

Query: 131 ALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGA-CAKLHSMVHANLCLDLMDSRMV 189
            L     L+ A     ++ E  GI P +   N  + A C    +M  A      M +R  
Sbjct: 129 ILVGENQLKLALRFYRYMRE-MGIPPSVASLNVLIKALCKNSGTMDAALRIFREMPNRGC 187

Query: 190 GKNEVTYTELLKLAVWQKNLSAVHEIWEDY-IKHYSLSIFSLRKFVWSFTRLRDLKSAYE 248
             +  TY  L+        +    E++++   K  S ++ +    +    + +DL SA  
Sbjct: 188 PPHSYTYGTLIXGLCRLGKIGEAKELFKEMETKACSPTVVTYXSLIHGLCQSKDLDSAIR 247

Query: 249 TLQHMVALAMMGKLYINRT-SEGRLR---SSR----LDIPIPLNALPVMKVLRWSFSDVI 300
            L+ M +  +   ++   +  +G  +   SSR    LD+ +    LP M     ++S ++
Sbjct: 248 LLEEMASKGIKPNVFTYSSLMDGHCKSGCSSRALELLDMMVSRRHLPNM----ITYSTLV 303

Query: 301 HACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLK 360
           H   +      A +++ +M+  GL+P +  Y   I               L  M    + 
Sbjct: 304 HGLCKEGKLQEAVEILDRMKLQGLRPDAGLYGKIISGFCDICKFHEAANFLDEMVLGGIS 363

Query: 361 PQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAK 420
           P   T          +L + +   ++  +  CT               + P RA +++  
Sbjct: 364 PNRLTW---------SLHVRIHNIVVQGL--CT---------------EHPNRAFQLYLS 397

Query: 421 MRQK-LRPDIRTYELLFSLFGN 441
           MR + +  D +T++ L + F N
Sbjct: 398 MRTRGISIDAKTFDSLVNYFCN 419


>gi|10177016|dbj|BAB10204.1| maize crp1 protein-like [Arabidopsis thaliana]
          Length = 680

 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 106/544 (19%), Positives = 212/544 (38%), Gaps = 74/544 (13%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y +++ AL +   L EA    + L ++  + P+   YN+ +GACA+ + +  A   +  M
Sbjct: 141 YSILIHALGRSEKLYEA----FLLSQKQTLTPL--TYNALIGACARNNDIEKALNLIAKM 194

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAV------HEIWEDYIKHYSLSIFSLRKFVWSFT 238
                  + V Y+ +++       + +V       EI  D ++   L +  +   +  F 
Sbjct: 195 RQDGYQSDFVNYSLVIQSLTRSNKIDSVMLLRLYKEIERDKLE---LDVQLVNDIIMGFA 251

Query: 239 RLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSD 298
           +  D   A + L    A  +  K                                 +   
Sbjct: 252 KSGDPSKALQLLGMAQATGLSAKTA-------------------------------TLVS 280

Query: 299 VIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNN 358
           +I A   +  +  AE L  +++  G++P +  Y+  ++  V    L++   ++  M++  
Sbjct: 281 IISALADSGRTLEAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRG 340

Query: 359 LKPQDSTIATLSVECSKALELDLAEALLDQISRC---TNPKPFSAFLAACDTMDKPERAI 415
           + P + T + L      A   + A  +L ++       N   FS  LA      + ++  
Sbjct: 341 VSPDEHTYSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTF 400

Query: 416 KIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNI- 473
           ++  +M+   ++PD + Y ++   FG  N        F ++ S      IE D    N  
Sbjct: 401 QVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLS----EGIEPDRVTWNTL 456

Query: 474 -----QHS-HISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHR 527
                +H  HI  + + +A+   G +            P  T TYN +++S  + +    
Sbjct: 457 IDCHCKHGRHIVAEEMFEAMERRGCL------------PCAT-TYNIMINSYGDQERWDD 503

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
              +  +MK+ GI PN  T+  ++D       F  A   +  M   G  P +  Y ALI 
Sbjct: 504 MKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYNALIN 563

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
                G  ++A+N   +++ +G+   +L  N+++    E  R      +++ M +N V+P
Sbjct: 564 AYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLINAFGEDRRDAEAFAVLQYMKENGVKP 623

Query: 648 DPST 651
           D  T
Sbjct: 624 DVVT 627



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 88/366 (24%), Positives = 156/366 (42%), Gaps = 33/366 (9%)

Query: 347 GMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFL 402
            +++L + Q   L  + +T+ ++    + +     AEAL +++ R +  KP    ++A L
Sbjct: 259 ALQLLGMAQATGLSAKTATLVSIISALADSGRTLEAEALFEEL-RQSGIKPRTRAYNALL 317

Query: 403 AACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI 461
                    + A  + ++M ++ + PD  TY LL   +  VNA   E         + RI
Sbjct: 318 KGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAY--VNAGRWE---------SARI 366

Query: 462 NAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPT---YNTVLHS 518
              EM+    ++Q +      LL      G  ++  Q   + K+    P    YN V+ +
Sbjct: 367 VLKEMEAG--DVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDT 424

Query: 519 LVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC-CSIIRCFKSASALVSMMVRDGFYP 577
             +      AM  F +M + GI P+  T+N +IDC C   R    A  +   M R G  P
Sbjct: 425 FGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHI-VAEEMFEAMERRGCLP 483

Query: 578 QTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI-DVIEFI 636
              TY  +I    D   +D+   LL  +  +GI  +V+ + T++    + GR  D IE  
Sbjct: 484 CATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIE-C 542

Query: 637 IEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL-------SMRMLCEEVSTLEE 689
           +E+M    ++P  +  + + + Y   G    A+ A +V+       S+  L   ++   E
Sbjct: 543 LEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLINAFGE 602

Query: 690 KRSDFE 695
            R D E
Sbjct: 603 DRRDAE 608



 Score = 63.2 bits (152), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 77/389 (19%), Positives = 161/389 (41%), Gaps = 24/389 (6%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGM--EVLK 352
           +++ +I AC R  +   A  L+ +M+  G Q     Y   I+++     + + M   + K
Sbjct: 170 TYNALIGACARNNDIEKALNLIAKMRQDGYQSDFVNYSLVIQSLTRSNKIDSVMLLRLYK 229

Query: 353 IMQQNNLKPQDSTIATL------SVECSKALEL-DLAEALLDQISRCTNPKPFSAFLAAC 405
            ++++ L+     +  +      S + SKAL+L  +A+A        T     SA   + 
Sbjct: 230 EIERDKLELDVQLVNDIIMGFAKSGDPSKALQLLGMAQATGLSAKTATLVSIISALADSG 289

Query: 406 DTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAI 464
            T++    A  +F ++RQ  ++P  R Y  L   +       +  +M S+++  KR   +
Sbjct: 290 RTLE----AEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEME--KR--GV 341

Query: 465 EMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQE 524
             D      +H++  + +     G     R +++          +  ++ +L    +  E
Sbjct: 342 SPD------EHTYSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGE 395

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
             +  ++ K+MK+ G+ P+   YN++ID      C   A      M+ +G  P  +T+  
Sbjct: 396 WQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNT 455

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
           LI     +G    A  + + +   G       YN ++    ++ R D ++ ++ +M    
Sbjct: 456 LIDCHCKHGRHIVAEEMFEAMERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQG 515

Query: 645 VQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           + P+  T   +   Y   G  N A+E L+
Sbjct: 516 ILPNVVTHTTLVDVYGKSGRFNDAIECLE 544


>gi|225189439|emb|CAR70003.1| pentatricopeptide repeat(PPR)-containing protein At1g12700
           [Arabidopsis thaliana]
          Length = 602

 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 75/385 (19%), Positives = 166/385 (43%), Gaps = 47/385 (12%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           ++ + +I+   R   +  A  ++ ++  LG +P + T++  I  +  +  +   + ++  
Sbjct: 124 YTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLEGKVSKAVVLVDR 183

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPER 413
           M +N  +P   T  ++     ++ +  LA  +L ++                      ER
Sbjct: 184 MVENGCQPDMVTYNSIVNGICRSGDTSLAFDMLRKME---------------------ER 222

Query: 414 AIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNI 473
            +K           D+ TY  +      +++   +G + + +   K       +M    I
Sbjct: 223 NVK----------ADVFTYSTI------IDSLCRDGCIDAAISLFK-------EMETKGI 259

Query: 474 QHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAME 530
           + S ++  +L++ L   G   +   L++     +      T+N +L   V+  +   A E
Sbjct: 260 KSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANE 319

Query: 531 IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590
           ++K+M T GI PN  TYN ++D   +      A+ ++ +MVR+   P  +T+T+LIK   
Sbjct: 320 LYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYC 379

Query: 591 DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650
                D+ + +   +S  G+  + + Y+ +++  C+ G+I + E + ++M  + V PD  
Sbjct: 380 MVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVM 439

Query: 651 TCHFVFSGYVNCGFHNSAMEALQVL 675
           T   +  G  + G    A+E  + L
Sbjct: 440 TYGILLDGLCDNGKLEKALEIFEDL 464



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/269 (21%), Positives = 110/269 (40%), Gaps = 16/269 (5%)

Query: 421 MRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISM 480
           M+    PD  T+  L      +N    EG +   V    R       M  N  Q   ++ 
Sbjct: 150 MKLGYEPDTTTFNTL------INGLCLEGKVSKAVVLVDR-------MVENGCQPDMVTY 196

Query: 481 KNLLKAL---GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKT 537
            +++  +   G   +  ++++   +        TY+T++ SL        A+ +FK+M+T
Sbjct: 197 NSIVNGICRSGDTSLAFDMLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMET 256

Query: 538 CGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDE 597
            GI  +  TYN ++        +   + L+  MV     P  +T+  L+ + +  G   E
Sbjct: 257 KGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQE 316

Query: 598 ALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFS 657
           A  L   +   GI  +++ YNT++   C + R+     +++ M +NK  PD  T   +  
Sbjct: 317 ANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIK 376

Query: 658 GYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           GY      +  M+  + +S R L     T
Sbjct: 377 GYCMVKRVDDGMKVFRNISKRGLVANAVT 405



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 78/349 (22%), Positives = 134/349 (38%), Gaps = 29/349 (8%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           +++S +I +  R      A  L  +M++ G++ S  TY+  +R +       +G  +LK 
Sbjct: 229 FTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKD 288

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPK--PFSAFLAACDTMDK 410
           M    + P   T   L     K  +L  A  L  + I+R  +P    ++  +      ++
Sbjct: 289 MVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNR 348

Query: 411 PERAIKIFAKM-RQKLRPDIRTYELLFS-------------LFGNVNAPYEEGNM----- 451
              A  +   M R K  PDI T+  L               +F N++      N      
Sbjct: 349 LSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSI 408

Query: 452 ----FSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCD---SK 504
               F Q    K    +  +M  + +    ++   LL  L   G + + ++ F D   SK
Sbjct: 409 LVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSK 468

Query: 505 TPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSAS 564
             LG   Y T++  + +  +   A  +F  +   G+ PN  TY +MI           A+
Sbjct: 469 MDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEAN 528

Query: 565 ALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHD 613
            L+  M  DG  P   TY  LI+  L  GD   +  L++ +   G   D
Sbjct: 529 ILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSAD 577



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 77/158 (48%), Gaps = 4/158 (2%)

Query: 496 LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCS 555
           L Q    S+   G   ++    ++   ++ +  ++  KQ++  GI  N  T NIMI+C  
Sbjct: 75  LFQEMIRSRPLPGLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINC-- 132

Query: 556 IIRCFKS--ASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHD 613
             RC K+  A +++  +++ G+ P T T+  LI  L   G   +A+ L+D +   G   D
Sbjct: 133 FCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLEGKVSKAVVLVDRMVENGCQPD 192

Query: 614 VLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
           ++ YN+I+   C  G   +   ++ +M +  V+ D  T
Sbjct: 193 MVTYNSIVNGICRSGDTSLAFDMLRKMEERNVKADVFT 230



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 70/318 (22%), Positives = 132/318 (41%), Gaps = 29/318 (9%)

Query: 59  IVDALC-RGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKE 117
           +++ LC  G+ S+A  L+  +           +  I+N   RS D     +  R MEE+ 
Sbjct: 164 LINGLCLEGKVSKAVVLVDRMVENGCQPDMVTYNSIVNGICRSGDTSLAFDMLRKMEERN 223

Query: 118 IGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHA 177
           +  +   Y  ++ +LC+ G ++ A +L   + E  GI   +  YNS +    K       
Sbjct: 224 VKADVFTYSTIIDSLCRDGCIDAAISLFKEM-ETKGIKSSVVTYNSLVRGLCKAGKWNDG 282

Query: 178 NLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYSLSIFSLRKFVWS 236
            L L  M SR +  N +T+  LL + V +  L   +E++++ I +  S +I +    +  
Sbjct: 283 ALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDG 342

Query: 237 FTRLRDLKSAYETLQHMV-----------ALAMMGKLYINRTSEG----RLRSSRLDIPI 281
           +     L  A   L  MV              + G   + R  +G    R  S R    +
Sbjct: 343 YCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKR---GL 399

Query: 282 PLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSD 341
             NA+        ++S ++    ++    LAE+L  +M S G+ P   TY   +  +  +
Sbjct: 400 VANAV--------TYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDN 451

Query: 342 RGLRNGMEVLKIMQQNNL 359
             L   +E+ + +Q++ +
Sbjct: 452 GKLEKALEIFEDLQKSKM 469



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/177 (22%), Positives = 74/177 (41%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           T N +++      ++  A  +  ++   G  P+  T+N +I+   +      A  LV  M
Sbjct: 125 TLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLEGKVSKAVVLVDRM 184

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           V +G  P  +TY +++  +   GD   A ++L  +    +  DV  Y+TI+   C  G I
Sbjct: 185 VENGCQPDMVTYNSIVNGICRSGDTSLAFDMLRKMEERNVKADVFTYSTIIDSLCRDGCI 244

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTL 687
           D    + ++M    ++    T + +  G    G  N     L+ +  R +   V T 
Sbjct: 245 DAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITF 301



 Score = 45.1 bits (105), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 28/112 (25%), Positives = 57/112 (50%), Gaps = 1/112 (0%)

Query: 107 METWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLG 166
           +E +  +++ ++ L    Y  +++ +CKGG +E+A NL   L  + G+ P +  Y   + 
Sbjct: 458 LEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCK-GVKPNVMTYTVMIS 516

Query: 167 ACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWED 218
              K  S+  AN+ L  M+      N+ TY  L++  +   +L+A  ++ E+
Sbjct: 517 GLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEE 568


>gi|302786208|ref|XP_002974875.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
 gi|300157770|gb|EFJ24395.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
          Length = 382

 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/286 (24%), Positives = 119/286 (41%), Gaps = 25/286 (8%)

Query: 379 LDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKM--RQKLRPDIRTYELLF 436
           L+LA A  D +S       ++  +     + + + A  +F KM      RP+  TY  L 
Sbjct: 37  LELAHAQPDVVS-------YTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALV 89

Query: 437 SLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIREL 496
                 +          ++D+A+   A+  +  + +     ++   L+ AL   G + E 
Sbjct: 90  DGLCKQD----------RLDAAR---AVIAEARKRDFAPDVVTYNTLMAALFQLGRVDEA 136

Query: 497 IQYFCDSKTPLGTPT---YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC 553
           +  F         PT   +N ++  L  A+    A+E+F +M      PN  TY+++ID 
Sbjct: 137 LATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDG 196

Query: 554 CSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHD 613
                    A  L+  MV +G  P  + YT L+      G  D AL LL  +  +G   D
Sbjct: 197 LCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPD 256

Query: 614 VLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
           V+ Y  ++ K C+ GR+D    I  ++  NK  P+  T   +  GY
Sbjct: 257 VVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGY 302



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/249 (22%), Positives = 104/249 (41%), Gaps = 13/249 (5%)

Query: 394 NPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMF 452
           N   ++A +      D+ + A  + A+ R++   PD+ TY  L +    +    E    F
Sbjct: 81  NAFTYNALVDGLCKQDRLDAARAVIAEARKRDFAPDVVTYNTLMAALFQLGRVDEALATF 140

Query: 453 SQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTY 512
           +Q+     +  +   ++ N I       + L  AL       E+     D        TY
Sbjct: 141 TQMTEEGYVPTL---VSFNAIITGLCRARRLADAL-------EVFNEMIDRDFHPNLVTY 190

Query: 513 NTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVR 572
           + V+  L ++ +   A ++  +M + G  P+   Y  ++   S      SA  L+  MV 
Sbjct: 191 SVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVS 250

Query: 573 DGFYPQTMTYTALIKILLDYGDFDEALNLL-DLVSLEGIPHDVLLYNTILKKACEKGRID 631
            G  P  +TYT +I  L   G  D+A  +  +LV+ +  P+ V+ Y+ ++   C   R+D
Sbjct: 251 QGCIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPN-VVTYSALIGGYCRASRVD 309

Query: 632 VIEFIIEQM 640
               ++ +M
Sbjct: 310 EGGKVMREM 318



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 69/346 (19%), Positives = 132/346 (38%), Gaps = 40/346 (11%)

Query: 220 IKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMM--GKLYINRTSEGRLRSSRL 277
           + H    + S    +    +L  + +A++  + MVA           N   +G  +  RL
Sbjct: 39  LAHAQPDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRL 98

Query: 278 DIPIPLNALPVMKVLRWSFS-DVIHACGRTQNSGLAEQLML-----------QMQSLGLQ 325
           D    +    + +  +  F+ DV+     T N+ +A    L           QM   G  
Sbjct: 99  DAARAV----IAEARKRDFAPDVV-----TYNTLMAALFQLGRVDEALATFTQMTEEGYV 149

Query: 326 PSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEAL 385
           P+  +++  I  +   R L + +EV   M   +  P   T + +     K+ +LD A+ L
Sbjct: 150 PTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQL 209

Query: 386 LDQ-ISRCTNPK--PFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGN 441
           LD+ +S    P    ++  +       + + A+ +  +M  Q   PD+ TY ++      
Sbjct: 210 LDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCK 269

Query: 442 VNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFC 501
           V           +VD A   + I  ++  N    + ++   L+        + E  +   
Sbjct: 270 VG----------RVDDA---HEIFRELVANKCSPNVVTYSALIGGYCRASRVDEGGKVMR 316

Query: 502 DSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATY 547
           +        TYNT++  L     +  A  +F++M  CG  P+A TY
Sbjct: 317 EMACRPNVVTYNTMIWGLSMVDRNEEAYGMFREMSECGFVPDARTY 362



 Score = 46.2 bits (108), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 71/333 (21%), Positives = 128/333 (38%), Gaps = 18/333 (5%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y  ++  LCK G ++ A +L   +    G  P    YN+ +    K   +  A   +   
Sbjct: 49  YTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAARAVIAEA 108

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK----HYSLSIFSLRKFVWSFTRL 240
             R    + VTY  L+  A++Q  L  V E    + +     Y  ++ S    +    R 
Sbjct: 109 RKRDFAPDVVTYNTLMA-ALFQ--LGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRA 165

Query: 241 RDLKSAYETLQHMVALAMMGKLYI-NRTSEGRLRSSRLDIPIPLNALPVMKVLR---WSF 296
           R L  A E    M+       L   +   +G  +S +LD    L    V +  R    ++
Sbjct: 166 RRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAY 225

Query: 297 SDVI---HACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           + ++    A GR  +   A  L+ +M S G  P   TY   I  +     + +  E+ + 
Sbjct: 226 TPLVLGFSAAGRLDS---ALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFRE 282

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPER 413
           +  N   P   T + L     +A  +D    ++ +++   N   ++  +     +D+ E 
Sbjct: 283 LVANKCSPNVVTYSALIGGYCRASRVDEGGKVMREMACRPNVVTYNTMIWGLSMVDRNEE 342

Query: 414 AIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAP 445
           A  +F +M +    PD RTY  L      ++ P
Sbjct: 343 AYGMFREMSECGFVPDARTYRGLKRALRMIDHP 375



 Score = 43.9 bits (102), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 30/163 (18%), Positives = 71/163 (43%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TYN ++  L +      A  +  + +     P+  TYN ++     +     A A  + M
Sbjct: 84  TYNALVDGLCKQDRLDAARAVIAEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQM 143

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
             +G+ P  +++ A+I  L       +AL + + +       +++ Y+ ++   C+  ++
Sbjct: 144 TEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQL 203

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           D  + ++++M     +PD      +  G+   G  +SA+  L+
Sbjct: 204 DEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLR 246



 Score = 41.6 bits (96), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 1/94 (1%)

Query: 577 PQTMTYTALIKILLDYGDFDEALNLL-DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEF 635
           P  ++YT LI  L   G  D A +L   +V+  G   +   YN ++   C++ R+D    
Sbjct: 44  PDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAARA 103

Query: 636 IIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAM 669
           +I +  +    PD  T + + +     G  + A+
Sbjct: 104 VIAEARKRDFAPDVVTYNTLMAALFQLGRVDEAL 137


>gi|357521609|ref|XP_003631093.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525115|gb|AET05569.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 788

 Score = 80.9 bits (198), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 113/538 (21%), Positives = 201/538 (37%), Gaps = 58/538 (10%)

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
           ME+  +  N   Y  ++  LCK G++ +A  L   +GER GI      YNS +  C  + 
Sbjct: 186 MEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGER-GILLDAVTYNSLIDGCCSVG 244

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH-YSLSIFSLR 231
                   L  M    V  ++ T+  L+     +  +     +     K      I +  
Sbjct: 245 RWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYN 304

Query: 232 KFVWSFTRLRDLKSAYETLQHMVALAMMGK-LYINRTSEGRLRSSRLDIPIPL------- 283
             +  +    ++  A E    MV   +    L  N   +G  ++  +D  + L       
Sbjct: 305 ALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNK 364

Query: 284 NALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRG 343
           N +P +     S++ +I     +      ++L+ +M      P   TY+  I A+  +  
Sbjct: 365 NLVPTIA----SYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGR 420

Query: 344 LRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLA 403
           +   + VL +M +  +KP   T                                ++A + 
Sbjct: 421 ILEALGVLVMMMKKGVKPNIVT--------------------------------YNAMMD 448

Query: 404 ACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRIN 462
                +    A  IF +M +  L PDI  Y +L + +       E   +F ++     I 
Sbjct: 449 GYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIP 508

Query: 463 AIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEA 522
            I           S+ S+ + L  LG    ++EL+   CDS       TYN +L +  + 
Sbjct: 509 DIA----------SYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKT 558

Query: 523 QESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTY 582
           Q   +A+ +F+Q+   GI P+  T + ++D        K A   +  ++  G  P   TY
Sbjct: 559 QPFDKAISLFRQIVE-GIWPDFYTNHAIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTY 617

Query: 583 TALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQM 640
           T LI  L   G F EA+ LL  +     P D + +  I+    ++   D  E + E+M
Sbjct: 618 TILINALCKDGSFGEAMLLLSKMEDNDRPPDAITFEIIIGVLLQRNETDKAEKLREEM 675



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 103/525 (19%), Positives = 216/525 (41%), Gaps = 37/525 (7%)

Query: 154 IYPILP--VYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSA 211
           ++P  P  V++  LGA  ++     A      + S+ +  +  T+T L+     Q + + 
Sbjct: 49  VFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSIATFTILINCYFHQSHTAF 108

Query: 212 VHEIWEDYIKH-YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMM------GKLYI 264
              +    +K  Y  ++ +    +  F     +  A +  Q+++A   +      G L  
Sbjct: 109 AFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQFTYGTLIN 168

Query: 265 NRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHAC---GRTQNSGLAEQLML--QM 319
             +  G+++++       L+ L  M+      + V+++    G  ++  +++ L L  Q+
Sbjct: 169 GLSKNGQIKAA-------LHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQI 221

Query: 320 QSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALEL 379
              G+   + TY+  I    S    +   ++L  M + N+ P D T   L     K   +
Sbjct: 222 GERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRI 281

Query: 380 DLAEALLDQISRCTNPKP----FSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYEL 434
             A+ +L  +S+    KP    ++A +    + +    A ++F +M ++ L PD+  Y +
Sbjct: 282 LEAQGVLAMMSK-RGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNV 340

Query: 435 LFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIR 494
           L   +       E   +F ++ +   +  I           S+ S+ + L   G    ++
Sbjct: 341 LIDGYCKTKMVDEAMVLFKELCNKNLVPTIA----------SYNSLIDGLCNSGRISHVK 390

Query: 495 ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCC 554
           +L+     S  P    TYN ++ +L +      A+ +   M   G+ PN  TYN M+D  
Sbjct: 391 KLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGY 450

Query: 555 SIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDV 614
            +      A  + + MV+ G  P  + Y  LI         DEA+ L   +  + +  D+
Sbjct: 451 CLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDI 510

Query: 615 LLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
             YN+++   C  GRI  ++ ++++M  +   PD  T + +   +
Sbjct: 511 ASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAF 555



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 78/338 (23%), Positives = 145/338 (42%), Gaps = 31/338 (9%)

Query: 379 LDLAEALLDQISRCTNPKPFSAF---LAACDTMDKPERAIKIFAKMRQK-LRPDIRTYEL 434
           +D A    +++ R   P P S F   L A   M     AI +F +++ K + P I T+ +
Sbjct: 36  VDDAVTCFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSIATFTI 95

Query: 435 L-------------FSLFGNVNAPYEEGNM--FSQVDSAKRINAI---EMDMARNNIQHS 476
           L             FSL   +     + N+  F+ + +   IN +    +D  +N +   
Sbjct: 96  LINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQG 155

Query: 477 HI----SMKNLLKALGAEGMIR---ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAM 529
           ++    +   L+  L   G I+    L+Q    S        Y+ ++  L +      A+
Sbjct: 156 YLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDAL 215

Query: 530 EIFKQMKTCGIPPNAATYNIMID-CCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
            +  Q+   GI  +A TYN +ID CCS+ R ++  + L++ MVR+   P   T+  LI  
Sbjct: 216 GLCSQIGERGILLDAVTYNSLIDGCCSVGR-WQEVTQLLTKMVRENVDPDDYTFNILIDA 274

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
           L   G   EA  +L ++S  G   D++ YN +++  C +  +     +  +M +  ++PD
Sbjct: 275 LCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPD 334

Query: 649 PSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
               + +  GY      + AM   + L  + L   +++
Sbjct: 335 VLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIAS 372



 Score = 76.6 bits (187), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 77/380 (20%), Positives = 161/380 (42%), Gaps = 24/380 (6%)

Query: 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
           ++++  +I+   +      A  L+ +M+   +QP+   Y   I  +  D  + + + +  
Sbjct: 160 QFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCS 219

Query: 353 IMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR-CTNPKPFSAFLAACDTMDKP 411
            + +  +     T  +L   C           LL ++ R   +P  ++ F    D + K 
Sbjct: 220 QIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYT-FNILIDALCKE 278

Query: 412 ERAIK---IFAKMRQKL-RPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMD 467
            R ++   + A M ++  +PDI TY  L   + +    +E   +F+++   KR   +E D
Sbjct: 279 GRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRM--VKR--GLEPD 334

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQE 524
           +   N+         L+       M+ E   L +  C+        +YN+++  L  +  
Sbjct: 335 VLNYNV---------LIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGR 385

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDC-CSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
                ++  +M     PP+  TYNI+ID  C   R  ++   LV MM++ G  P  +TY 
Sbjct: 386 ISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLV-MMMKKGVKPNIVTYN 444

Query: 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
           A++       + + A ++ + +   G+  D+L YN ++   C+   +D    + ++M   
Sbjct: 445 AMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHK 504

Query: 644 KVQPDPSTCHFVFSGYVNCG 663
            + PD ++ + +  G  N G
Sbjct: 505 NLIPDIASYNSLIDGLCNLG 524


>gi|125590530|gb|EAZ30880.1| hypothetical protein OsJ_14954 [Oryza sativa Japonica Group]
          Length = 442

 Score = 80.9 bits (198), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 80/166 (48%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TYN ++H+L E  +   A+ +   M   G  P+  TYNI+++     R ++ A  L+ +M
Sbjct: 9   TYNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAMELIDLM 68

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
             +G  P  +TY  L+  +   GD D+AL LL  +   G     + YNT+LK  C   R 
Sbjct: 69  RAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGLCSAERW 128

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
              + ++ +M +    P+ +T + V       G    A++ L+ +S
Sbjct: 129 GDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMS 174



 Score = 76.3 bits (186), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 88/374 (23%), Positives = 152/374 (40%), Gaps = 56/374 (14%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A +L+  + S G +PS+  Y+  ++ + S     +  E++  M + N  P ++T   +  
Sbjct: 96  ALELLRNLPSHGCKPSTVNYNTVLKGLCSAERWGDADELVTEMLRENCPPNEATFNVVIY 155

Query: 372 E-CSKALELDLAEALLDQISR--CT-NPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLR 426
             C K L L  A  LL+++S+  CT N   ++A +         + A+ + +KM+    +
Sbjct: 156 SLCRKGL-LQQAIQLLEKMSKHGCTANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCK 214

Query: 427 PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM--DMARNNIQHSHISMKNLL 484
           PDI TY  L                     +A+ ++A E+  +M +N     +++   L+
Sbjct: 215 PDIVTYNTLLK---------------GLCSAARWVDAEELMDNMTQNGCLPDNVTFNTLI 259

Query: 485 KALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNA 544
             L  +G++ +                                A+E+FKQM   G  PN+
Sbjct: 260 GFLCQKGLMVD--------------------------------AIEVFKQMPDKGCTPNS 287

Query: 545 ATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDL 604
            TY+ +I   +       A  L + M   GF P  + Y  L + L D    +EA+  +  
Sbjct: 288 ITYSTIISGLAKATKLDQALELFNEMGHKGFNPDKI-YQLLAECLNDDDTIEEAIQTVRK 346

Query: 605 VSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGF 664
           +   GI    +LYN IL   C  G+ +    I+  M  +   PD  T   +  G    G+
Sbjct: 347 LQDSGISPHTVLYNAILLGLCRNGKTEFAIDIMAYMVSSGCMPDDLTYVILIEGLAYEGY 406

Query: 665 HNSAMEALQVLSMR 678
            N A E L  L  R
Sbjct: 407 LNEARELLIKLCSR 420



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 90/205 (43%), Gaps = 11/205 (5%)

Query: 476 SHISMKNLLKALGAEG-------MIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRA 528
           ++++   L+  +  EG       ++R L  + C   T      YNTVL  L  A+    A
Sbjct: 76  NNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTV----NYNTVLKGLCSAERWGDA 131

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
            E+  +M     PPN AT+N++I         + A  L+  M + G     +TY A+I  
Sbjct: 132 DELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIING 191

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
           L +  + D A+ LL  +   G   D++ YNT+LK  C   R    E +++ M QN   PD
Sbjct: 192 LCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAARWVDAEELMDNMTQNGCLPD 251

Query: 649 PSTCHFVFSGYVNCGFHNSAMEALQ 673
             T + +       G    A+E  +
Sbjct: 252 NVTFNTLIGFLCQKGLMVDAIEVFK 276



 Score = 48.9 bits (115), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 100/440 (22%), Positives = 168/440 (38%), Gaps = 62/440 (14%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y  ++  LC+ G + +A +++  +  R G  P +  YN  L A  K      A   +DLM
Sbjct: 10  YNPLIHTLCERGQVRDALSVLDDMLCR-GCAPDVVTYNILLEATCKGRGYRQAMELIDLM 68

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH----YSLSIFSLRKFVWSFTRL 240
            +     N VTY  L+     + ++    E+  +   H     +++  ++ K + S  R 
Sbjct: 69  RAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGLCSAERW 128

Query: 241 RDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVI 300
            D   A E +  M+                     R + P P  A         +F+ VI
Sbjct: 129 GD---ADELVTEML---------------------RENCP-PNEA---------TFNVVI 154

Query: 301 HACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLK 360
           ++  R      A QL+ +M   G   +  TY+  I  +   R +   M +L  M+    K
Sbjct: 155 YSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCK 214

Query: 361 PQDSTIATL-SVECSKALELDLAEALLDQISR--C-TNPKPFSAFLAACDTMDKPERAIK 416
           P   T  TL    CS A  +D AE L+D +++  C  +   F+  +           AI+
Sbjct: 215 PDIVTYNTLLKGLCSAARWVD-AEELMDNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIE 273

Query: 417 IFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQH 475
           +F +M  K   P+  TY  + S         +   +F++             M       
Sbjct: 274 VFKQMPDKGCTPNSITYSTIISGLAKATKLDQALELFNE-------------MGHKGFNP 320

Query: 476 SHISMKNLLKALGAEGMIRELIQY---FCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIF 532
             I  + L + L  +  I E IQ      DS     T  YN +L  L    ++  A++I 
Sbjct: 321 DKI-YQLLAECLNDDDTIEEAIQTVRKLQDSGISPHTVLYNAILLGLCRNGKTEFAIDIM 379

Query: 533 KQMKTCGIPPNAATYNIMID 552
             M + G  P+  TY I+I+
Sbjct: 380 AYMVSSGCMPDDLTYVILIE 399



 Score = 43.1 bits (100), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 2/100 (2%)

Query: 577 PQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE-KGRIDVIEF 635
           P   TY  LI  L + G   +AL++LD +   G   DV+ YN +L+  C+ +G    +E 
Sbjct: 5   PNAYTYNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAME- 63

Query: 636 IIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
           +I+ M      P+  T + +  G    G  + A+E L+ L
Sbjct: 64  LIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNL 103


>gi|384247929|gb|EIE21414.1| TPR-like protein [Coccomyxa subellipsoidea C-169]
          Length = 448

 Score = 80.9 bits (198), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 70/307 (22%), Positives = 129/307 (42%), Gaps = 20/307 (6%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           ++++ +I  CG  Q    A +L+ +M+  G+  + HTY   +   +    L   ++V   
Sbjct: 74  YTYTTIISQCGSHQQLRKALELVAEMRGHGVVCNVHTYSALMNVCIKANELELALDVYGQ 133

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI-SRCTNP--KPFSAFLAACDTMDK 410
           + +    P   T   L     K      A  +LD +  + T P  + ++  L+AC+   +
Sbjct: 134 LLREGCTPNLVTYNILIDIHGKMGNWQEAVQVLDALEDQGTKPEVRTYNTILSACNRSGQ 193

Query: 411 PERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
           PE A++++ +M     +P   TY  L S +G             +++ A RI     DM 
Sbjct: 194 PEHALRVYERMLADGAQPTATTYTALISAYGKTG----------KIEEALRIF---QDMV 240

Query: 470 RNNIQHSHISMKNLLKALGAEG---MIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESH 526
           R   + + I+  +L+ A    G   +  EL+           T T+N +L +  +  +  
Sbjct: 241 RRGCERNVITYSSLISACEKAGRWQLALELLDEMHRDNCKPNTVTFNALLSACAQGGQWK 300

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
            A ++F+QM +CG  P+A +Y I+I        +  A   +  M   G  P    Y  +I
Sbjct: 301 AAQDVFEQMPSCGCKPDAVSYAILISAFDRGNQWCRALQALDEMQGQGHRPDVGVYNVVI 360

Query: 587 KILLDYG 593
           + L   G
Sbjct: 361 EALTRSG 367



 Score = 76.3 bits (186), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 70/307 (22%), Positives = 128/307 (41%), Gaps = 20/307 (6%)

Query: 329 HTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ 388
           +TY   I    S + LR  +E++  M+ + +     T + L   C KA EL+LA  +  Q
Sbjct: 74  YTYTTIISQCGSHQQLRKALELVAEMRGHGVVCNVHTYSALMNVCIKANELELALDVYGQ 133

Query: 389 ISR--CT-NPKPFSAFLAACDTMDKPERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNA 444
           + R  CT N   ++  +     M   + A+++   +  Q  +P++RTY  + S       
Sbjct: 134 LLREGCTPNLVTYNILIDIHGKMGNWQEAVQVLDALEDQGTKPEVRTYNTILSACNRSGQ 193

Query: 445 PYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCD-- 502
           P     ++ +             M  +  Q +  +   L+ A G  G I E ++ F D  
Sbjct: 194 PEHALRVYER-------------MLADGAQPTATTYTALISAYGKTGKIEEALRIFQDMV 240

Query: 503 -SKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFK 561
                    TY++++ +  +A     A+E+  +M      PN  T+N ++  C+    +K
Sbjct: 241 RRGCERNVITYSSLISACEKAGRWQLALELLDEMHRDNCKPNTVTFNALLSACAQGGQWK 300

Query: 562 SASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTIL 621
           +A  +   M   G  P  ++Y  LI        +  AL  LD +  +G   DV +YN ++
Sbjct: 301 AAQDVFEQMPSCGCKPDAVSYAILISAFDRGNQWCRALQALDEMQGQGHRPDVGVYNVVI 360

Query: 622 KKACEKG 628
           +     G
Sbjct: 361 EALTRSG 367



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 1/172 (0%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TY T++      Q+  +A+E+  +M+  G+  N  TY+ +++ C      + A  +   +
Sbjct: 75  TYTTIISQCGSHQQLRKALELVAEMRGHGVVCNVHTYSALMNVCIKANELELALDVYGQL 134

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           +R+G  P  +TY  LI I    G++ EA+ +LD +  +G   +V  YNTIL      G+ 
Sbjct: 135 LREGCTPNLVTYNILIDIHGKMGNWQEAVQVLDALEDQGTKPEVRTYNTILSACNRSGQP 194

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCE 682
           +    + E+M  +  QP  +T   + S Y   G    A+   Q + +R  CE
Sbjct: 195 EHALRVYERMLADGAQPTATTYTALISAYGKTGKIEEALRIFQDM-VRRGCE 245



 Score = 67.0 bits (162), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 58/279 (20%), Positives = 116/279 (41%), Gaps = 17/279 (6%)

Query: 398 FSAFLAACDTMDKPERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVD 456
           ++  ++ C +  +  +A+++ A+MR   +  ++ TY  L ++    N      +++ Q  
Sbjct: 76  YTTIISQCGSHQQLRKALELVAEMRGHGVVCNVHTYSALMNVCIKANELELALDVYGQ-- 133

Query: 457 SAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFC---DSKTPLGTPTYN 513
                      + R     + ++   L+   G  G  +E +Q      D  T     TYN
Sbjct: 134 -----------LLREGCTPNLVTYNILIDIHGKMGNWQEAVQVLDALEDQGTKPEVRTYN 182

Query: 514 TVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRD 573
           T+L +   + +   A+ ++++M   G  P A TY  +I         + A  +   MVR 
Sbjct: 183 TILSACNRSGQPEHALRVYERMLADGAQPTATTYTALISAYGKTGKIEEALRIFQDMVRR 242

Query: 574 GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVI 633
           G     +TY++LI      G +  AL LLD +  +    + + +N +L    + G+    
Sbjct: 243 GCERNVITYSSLISACEKAGRWQLALELLDEMHRDNCKPNTVTFNALLSACAQGGQWKAA 302

Query: 634 EFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEAL 672
           + + EQM     +PD  +   + S +        A++AL
Sbjct: 303 QDVFEQMPSCGCKPDAVSYAILISAFDRGNQWCRALQAL 341



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 78/164 (47%), Gaps = 2/164 (1%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TYN ++    +      A+++   ++  G  P   TYN ++  C+     + A  +   M
Sbjct: 145 TYNILIDIHGKMGNWQEAVQVLDALEDQGTKPEVRTYNTILSACNRSGQPEHALRVYERM 204

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEK-GR 629
           + DG  P   TYTALI      G  +EAL +   +   G   +V+ Y++++  ACEK GR
Sbjct: 205 LADGAQPTATTYTALISAYGKTGKIEEALRIFQDMVRRGCERNVITYSSLI-SACEKAGR 263

Query: 630 IDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
             +   ++++MH++  +P+  T + + S     G   +A +  +
Sbjct: 264 WQLALELLDEMHRDNCKPNTVTFNALLSACAQGGQWKAAQDVFE 307


>gi|242067341|ref|XP_002448947.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
 gi|241934790|gb|EES07935.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
          Length = 797

 Score = 80.9 bits (198), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 125/576 (21%), Positives = 219/576 (38%), Gaps = 68/576 (11%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYG------IYPILPVYNSFL--GACAKLHSMVH 176
           Y  +++  C     EEA  L++ + +  G      +     V N F   G   K +    
Sbjct: 168 YNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVVSYATVINGFFTEGQVDKAY---- 223

Query: 177 ANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYSLSIFSLRKFVW 235
            NL L++MD R +  N VTYT ++      + +     +++  I K       +    + 
Sbjct: 224 -NLFLEMMD-RGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLIH 281

Query: 236 SFTRLRDLKSAYETLQHMVALAM------MGKLYINRTSEGRLRSSRL--DIPIPLNALP 287
            +  +   K     L+ M A  +       G L     + GR R +R   D  I     P
Sbjct: 282 GYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARFFFDSMIRKGIKP 341

Query: 288 VMKVLRWSFSDVIHACGRTQNSGLAE--QLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLR 345
            + +    +  +IH  G      L+E   L+  M   GL P  H ++    A      + 
Sbjct: 342 NVAI----YGILIH--GYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMID 395

Query: 346 NGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI---SRCTNPKPFSAFL 402
             M +   M+Q  L P       L     K   +D A    +Q+       N   F++ +
Sbjct: 396 EAMHIFNKMKQQGLSPDVVNFGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLV 455

Query: 403 AACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLF---GNVNAPYEEGNMFSQVDS- 457
               T+DK E+A + + +M  Q +RPD+  +  +       G V       ++  +V + 
Sbjct: 456 YGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTR 515

Query: 458 ---------------AKRIN--AIEMD-MARNNIQHSHISMKNLLKAL-------GAEGM 492
                            RI+  A  +D M    ++    +   LL           A G+
Sbjct: 516 PDVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGV 575

Query: 493 IRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID 552
            RE+++   +  TP G  TY+T+LH L   +    A E++  M T G   N   YNI+++
Sbjct: 576 FREMLR---NGITP-GVVTYSTILHGLFTTRRFSEAKELYLNMITSGKQWNIWIYNIILN 631

Query: 553 CCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPH 612
             S   C   A  L   +    F  +  T+  +I  L   G  ++A++L   +S  G+  
Sbjct: 632 GLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGALFKSGRNEDAMHLFATISSYGLVP 691

Query: 613 DVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
           DV  Y  I +   E+G ++  + +   M ++   P+
Sbjct: 692 DVFTYCLIAENLIEEGYLEEFDDLFSAMEKSGTTPN 727



 Score = 79.0 bits (193), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 96/403 (23%), Positives = 161/403 (39%), Gaps = 49/403 (12%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTY----DGFIRAIVSDRGLRNGMEV 350
           S++ VI+          A  L L+M   G+QP+  TY    DG  +A V DR       V
Sbjct: 205 SYATVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDR----AEGV 260

Query: 351 LKIMQQNNLKPQDSTI-----ATLSV----ECSKALELDLAEALLDQISRCTNPKPFSAF 401
            + M    +KP + T        LS+    E  + LE   A  L      C        +
Sbjct: 261 FQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPD---CYTYGSLLNY 317

Query: 402 LAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGN----------VNAPYEEG-- 449
           L  C+     E      + +R+ ++P++  Y +L   +            +N   E G  
Sbjct: 318 L--CNNGRCREARFFFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLS 375

Query: 450 ---NMFSQVDSAKRINA-------IEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQY 499
              ++F+ + +A    A       I   M +  +    ++   L+ AL   G + + +  
Sbjct: 376 PDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNFGALIDALCKLGRVDDAVLK 435

Query: 500 FCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYN-IMIDCCS 555
           F         P    +N++++ L    +  +A E + +M   GI P+   +N I+ + C+
Sbjct: 436 FNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCT 495

Query: 556 IIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVL 615
             +  K A  L+ +M R G  P  ++YT LI      G  DEA   LD++   G+  D  
Sbjct: 496 KGQVMK-AQRLIDLMERVGTRPDVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEW 554

Query: 616 LYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
            YNT+L   C  GRID    +  +M +N + P   T   +  G
Sbjct: 555 TYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHG 597



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 65/265 (24%), Positives = 110/265 (41%), Gaps = 15/265 (5%)

Query: 478 ISMKNLLKALGAEGMIRELIQYFC---DSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQ 534
           +S   ++     EG + +    F    D        TY TV+  L +AQ   RA  +F+Q
Sbjct: 204 VSYATVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQ 263

Query: 535 MKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGD 594
           M   G+ P+  TYN +I     I  +K    ++  M   G  P   TY +L+  L + G 
Sbjct: 264 MIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGR 323

Query: 595 FDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHF 654
             EA    D +  +GI  +V +Y  ++     KG +  +  ++  M +N + PD    + 
Sbjct: 324 CREARFFFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNI 383

Query: 655 VFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDFEDLI--LAEDSEAESRILQF 712
           +F+ Y      + AM     +  + L  +V        +F  LI  L +    +  +L+F
Sbjct: 384 IFTAYAKKAMIDEAMHIFNKMKQQGLSPDV-------VNFGALIDALCKLGRVDDAVLKF 436

Query: 713 CEDSNENLA---FTAALLQLRWCTI 734
            +  NE +A   F    L    CT+
Sbjct: 437 NQMMNEGVAPNIFVFNSLVYGLCTV 461



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 77/366 (21%), Positives = 148/366 (40%), Gaps = 14/366 (3%)

Query: 314 QLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVEC 373
            +M   Q     P+  +Y   I    ++  +     +   M    ++P   T  T+    
Sbjct: 189 HMMADSQGRSCPPNVVSYATVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGL 248

Query: 374 SKALELDLAEALLDQ-ISRCTNPK--PFSAFLAACDTMDKPERAIKIFAKMR-QKLRPDI 429
            KA  +D AE +  Q I +   P    ++  +    ++ K +  +++  +M    L+PD 
Sbjct: 249 CKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDC 308

Query: 430 RTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGA 489
            TY  L +   N N    E   F   DS  R   I+ ++A   I     + K      GA
Sbjct: 309 YTYGSLLNYLCN-NGRCREARFF--FDSMIR-KGIKPNVAIYGILIHGYATK------GA 358

Query: 490 EGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNI 549
              + +L+    ++        +N +  +  +      AM IF +MK  G+ P+   +  
Sbjct: 359 LSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNFGA 418

Query: 550 MIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEG 609
           +ID    +     A    + M+ +G  P    + +L+  L     +++A      +  +G
Sbjct: 419 LIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQG 478

Query: 610 IPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAM 669
           I  DV+ +NTIL   C KG++   + +I+ M +   +PD  +   +  G+   G  + A 
Sbjct: 479 IRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPDVISYTTLIGGHCLVGRIDEAA 538

Query: 670 EALQVL 675
           ++L V+
Sbjct: 539 KSLDVM 544



 Score = 43.1 bits (100), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 4/110 (3%)

Query: 524 ESHRAMEIFKQMK---TCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTM 580
           ES   + +F +M    T  + P+  TY+I+I C   +   +   A   ++++ G+    +
Sbjct: 71  ESELVVSLFNRMIRECTIKVTPDLCTYSILIGCFCRMGRLEHGFATFGLILKSGWRVNNI 130

Query: 581 TYTALIKILLDYGDFDEALNLLDLVSLE-GIPHDVLLYNTILKKACEKGR 629
               L+K L D     EA+++L     E G   DV+ YNT+LK  C + R
Sbjct: 131 VINQLLKGLCDAKRLREAMDILIKRMPELGCTPDVVSYNTLLKGFCNEKR 180


>gi|414591656|tpg|DAA42227.1| TPA: PPR-814a [Zea mays]
          Length = 816

 Score = 80.9 bits (198), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 74/316 (23%), Positives = 133/316 (42%), Gaps = 13/316 (4%)

Query: 359 LKPQDSTIATLSVECSKALELDLAEALLDQISRC---TNPKPFSAFLAACDTMDKPERAI 415
           L P   T A L   C++A   +LA A   Q+ R     +    S  L       + + A+
Sbjct: 109 LSPTSYTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRTDEAL 168

Query: 416 KIFAKMRQKLR--PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNI 473
            I      +L   PD+ +Y +L     N     +  ++   +     + + ++ +A N +
Sbjct: 169 DILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDV-VAYNTV 227

Query: 474 QHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFK 533
                   ++ KA     + +E++Q       P    TY++V+H+L +A+   +A    +
Sbjct: 228 IDGFFKEGDVNKACD---LFKEMVQ----RGIPPDLVTYSSVVHALCKARAMDKAEAFLR 280

Query: 534 QMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYG 593
           QM   G+ P+  TYN +I   S    +K A  +   M R    P  +    L+  L  YG
Sbjct: 281 QMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYG 340

Query: 594 DFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCH 653
              EA ++ D ++++G   DV  Y  +L     KG +  +  + + M  + + PD  T +
Sbjct: 341 KIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFN 400

Query: 654 FVFSGYVNCGFHNSAM 669
            +   Y NCG  + AM
Sbjct: 401 VLIKAYANCGMLDKAM 416



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 86/407 (21%), Positives = 159/407 (39%), Gaps = 57/407 (14%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           ++S V+HA  + +    AE  + QM + G+ P + TY+  I    S    +  + V K M
Sbjct: 258 TYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEM 317

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQIS-RCTNPKPFSAFL----------- 402
           ++ ++ P    + TL     K  ++  A  + D ++ +  NP  FS  +           
Sbjct: 318 RRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCL 377

Query: 403 -----------------------------AACDTMDKPERAIKIFAKMR-QKLRPDIRTY 432
                                        A C  +DK   A+ IF +MR   ++P + TY
Sbjct: 378 VDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDK---AMIIFNEMRDHGVKPHVVTY 434

Query: 433 ELLFSLFGNVNAPYEEGNMFSQ-VDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEG 491
             + +    +    +    F+Q +D       +    A + +     +  +LLKA     
Sbjct: 435 MTVIAALCRIGKMDDAMEKFNQMIDQG----VVPDKYAYHCLIQGFCTHGSLLKA----- 485

Query: 492 MIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI 551
             +ELI    ++   L    + +++++L +      A  IF      G+ P+A  YN+++
Sbjct: 486 --KELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLM 543

Query: 552 DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIP 611
           D   ++   + A  +   MV  G  P  + Y  L+      G  DE L+L   +  +GI 
Sbjct: 544 DGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIK 603

Query: 612 HDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
              +LYN I+    E GR    +    +M ++ +  +  T   V  G
Sbjct: 604 PSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRG 650



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 74/301 (24%), Positives = 127/301 (42%), Gaps = 34/301 (11%)

Query: 381 LAEALLDQI-SRCTNPK-------PFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTY 432
           LA AL ++  SR   P+        ++  +  C    +PE A+  F    Q LR  +R  
Sbjct: 91  LAVALFNRAASRAQGPRVLSPTSYTYAILMDCCTRAHRPELALAFFG---QLLRTGLRVD 147

Query: 433 ELLFSLFGNVNAPYEEGNMFSQVDSAKRIN-AIEMDMARN---NIQHSHISMKNLLKAL- 487
            ++ S            ++      AKR + A+++ + R           S   LLK+L 
Sbjct: 148 AIIAS------------HLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYNILLKSLC 195

Query: 488 --GAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPP 542
             G  G   +L++   +  T + +P    YNTV+    +  + ++A ++FK+M   GIPP
Sbjct: 196 NQGKSGQADDLLRMMAEGGT-VCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPP 254

Query: 543 NAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL 602
           +  TY+ ++      R    A A +  MV  G  P   TY  LI      G + EA+ + 
Sbjct: 255 DLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVF 314

Query: 603 DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNC 662
             +  + I  DV+  NT++   C+ G+I     + + M      PD  +   + +GY   
Sbjct: 315 KEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATK 374

Query: 663 G 663
           G
Sbjct: 375 G 375



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 78/392 (19%), Positives = 150/392 (38%), Gaps = 24/392 (6%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGL--QPSSHTYDGFIRAIVSDRGLRNGMEVL 351
           +S++ ++ +      SG A+ L+  M   G    P    Y+  I     +  +    ++ 
Sbjct: 185 FSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLF 244

Query: 352 KIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPK--PFSAFLAACDTM 408
           K M Q  + P   T +++     KA  +D AEA L Q +++   P    ++  +    + 
Sbjct: 245 KEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSST 304

Query: 409 DKPERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMD 467
            + + A+++F +MR Q + PD+     L           E  ++F               
Sbjct: 305 GQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDT------------- 351

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRELIQYF----CDSKTPLGTPTYNTVLHSLVEAQ 523
           MA         S   +L     +G + ++   F     D   P    T+N ++ +     
Sbjct: 352 MAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAP-DIYTFNVLIKAYANCG 410

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
              +AM IF +M+  G+ P+  TY  +I     I     A    + M+  G  P    Y 
Sbjct: 411 MLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYH 470

Query: 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
            LI+    +G   +A  L+  +   G+  D++ + +I+   C+ GR+   + I +     
Sbjct: 471 CLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNV 530

Query: 644 KVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
            + PD    + +  GY   G    A+     +
Sbjct: 531 GLHPDAVVYNMLMDGYCLVGKMEKALRVFDAM 562



 Score = 75.9 bits (185), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 62/268 (23%), Positives = 115/268 (42%), Gaps = 20/268 (7%)

Query: 413 RAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471
           +A  +F +M Q+ + PD+ TY  +        A          +D A+   A    M   
Sbjct: 239 KACDLFKEMVQRGIPPDLVTYSSVVHALCKARA----------MDKAE---AFLRQMVNK 285

Query: 472 NIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRA 528
            +   + +  NL+    + G  +E ++ F + +     P     NT++ SL +  +   A
Sbjct: 286 GVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEA 345

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
            ++F  M   G  P+  +Y IM++  +   C    + L  +M+ DG  P   T+  LIK 
Sbjct: 346 RDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKA 405

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
             + G  D+A+ + + +   G+   V+ Y T++   C  G++D       QM    V PD
Sbjct: 406 YANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPD 465

Query: 649 PSTCHFVFSGYVNCGFHNSAMEALQVLS 676
               H +  G+     H S ++A +++S
Sbjct: 466 KYAYHCLIQGFCT---HGSLLKAKELIS 490



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 81/178 (45%), Gaps = 7/178 (3%)

Query: 515 VLHSLVEAQESHRAMEIF-KQMKTCGIPPNAATYNIMIDCCSIIRCFKSASA--LVSMMV 571
           +L    EA+ +  A++I   +    G  P+  +YNI++   S+    KS  A  L+ MM 
Sbjct: 154 LLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYNILLK--SLCNQGKSGQADDLLRMMA 211

Query: 572 RDGFY--PQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
             G    P  + Y  +I      GD ++A +L   +   GIP D++ Y++++   C+   
Sbjct: 212 EGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARA 271

Query: 630 IDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTL 687
           +D  E  + QM    V PD  T + +  GY + G    A+   + +  + +  +V  L
Sbjct: 272 MDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVAL 329



 Score = 54.3 bits (129), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 111/547 (20%), Positives = 215/547 (39%), Gaps = 48/547 (8%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y  ++    K G + +A +L   + +R GI P L  Y+S + A  K  +M  A   L  M
Sbjct: 224 YNTVIDGFFKEGDVNKACDLFKEMVQR-GIPPDLVTYSSVVHALCKARAMDKAEAFLRQM 282

Query: 185 DSRMVGKNEVTYTELL----KLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRL 240
            ++ V  +  TY  L+        W++ +    E+    I    +++ +L   +  + ++
Sbjct: 283 VNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKI 342

Query: 241 RDLKSAYETLQHMVALAMMGK---------LYINRTSEGRL--RSSRLDIPIPLNALPVM 289
           ++ +  ++T+      AM G+         +     ++G L   +   D+ +     P +
Sbjct: 343 KEARDVFDTM------AMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDI 396

Query: 290 KVLRWSFSDVIHACGRTQNSGLAEQLML---QMQSLGLQPSSHTYDGFIRAIVSDRGLRN 346
               ++F+ +I A     N G+ ++ M+   +M+  G++P   TY   I A+     + +
Sbjct: 397 ----YTFNVLIKA---YANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDD 449

Query: 347 GMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACD 406
            ME    M    + P       L         L  A+ L+ +I           F +  +
Sbjct: 450 AMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIIN 509

Query: 407 TMDKPER---AIKIF-AKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRIN 462
            + K  R   A  IF   +   L PD   Y +L   +  V    +   +F  + SA    
Sbjct: 510 NLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSA---- 565

Query: 463 AIEMDM-ARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVE 521
            IE ++     + + +  +  + + L    + RE++Q      T L    YN ++  L E
Sbjct: 566 GIEPNVVGYGTLVNGYCKIGRIDEGLS---LFREMLQKGIKPSTIL----YNIIIDGLFE 618

Query: 522 AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMT 581
           A  +  A   F +M   GI  N  TY+I++      RCF  A  L   +         +T
Sbjct: 619 AGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIIT 678

Query: 582 YTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMH 641
              +I  +      +EA +L   +S  G+    + Y+ ++    ++G ++  E +   M 
Sbjct: 679 LNTMIAGMFQTRRVEEAKDLFASISRSGLVPCAVTYSIMITNLLKEGLVEEAEDMFSSMQ 738

Query: 642 QNKVQPD 648
               +PD
Sbjct: 739 NAGCEPD 745



 Score = 50.1 bits (118), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 69/321 (21%), Positives = 118/321 (36%), Gaps = 39/321 (12%)

Query: 382 AEALLDQISRCTNP---KPFSAFLAA---------CDTMDKPERAIKIF------AKMRQ 423
           A  LLD++ R   P   +  + FLAA         C +   P  A+ +F      A+  +
Sbjct: 50  AHDLLDELQRRGTPVLDRDLNGFLAALARAPSSAACGS--GPALAVALFNRAASRAQGPR 107

Query: 424 KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNL 483
            L P   TY +L       + P      F Q             + R  ++   I   +L
Sbjct: 108 VLSPTSYTYAILMDCCTRAHRPELALAFFGQ-------------LLRTGLRVDAIIASHL 154

Query: 484 LKALGAEGMIRELIQYFCDSKTPLG-TP---TYNTVLHSLVEAQESHRAMEIFKQMKTCG 539
           LK         E +         LG  P   +YN +L SL    +S +A ++ + M   G
Sbjct: 155 LKGFCEAKRTDEALDILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEGG 214

Query: 540 I--PPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDE 597
               P+   YN +ID          A  L   MV+ G  P  +TY++++  L      D+
Sbjct: 215 TVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDK 274

Query: 598 ALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFS 657
           A   L  +  +G+  D   YN ++      G+      + ++M +  + PD    + +  
Sbjct: 275 AEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMG 334

Query: 658 GYVNCGFHNSAMEALQVLSMR 678
                G    A +    ++M+
Sbjct: 335 SLCKYGKIKEARDVFDTMAMK 355


>gi|37572999|dbj|BAC98691.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|222640519|gb|EEE68651.1| hypothetical protein OsJ_27230 [Oryza sativa Japonica Group]
          Length = 691

 Score = 80.9 bits (198), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 88/402 (21%), Positives = 152/402 (37%), Gaps = 55/402 (13%)

Query: 270 GRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSH 329
           G LR    D   P NA        +S++ VI    R    G A ++  +M    + P+  
Sbjct: 185 GMLRRMGRDGAPPPNA--------FSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHI 236

Query: 330 TYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI 389
           TY+  I   +    L  G  +   M  + LKP   T   L     +A  +    ALLD++
Sbjct: 237 TYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEM 296

Query: 390 SRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEG 449
           +                                QK+ PD  TY +LF             
Sbjct: 297 AS-------------------------------QKMVPDGFTYSILF------------- 312

Query: 450 NMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMI---RELIQYFCDSKTP 506
           +  S+   +K + ++     +N +     +   LL  L  +G +    E++Q   ++   
Sbjct: 313 DGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLV 372

Query: 507 LGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASAL 566
                YNT+++   +  E   A   F QMK+  I P+  TYN +I+         +A  L
Sbjct: 373 PTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDL 432

Query: 567 VSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE 626
           +  M  +G  P   T+  LI      G  ++   +L  +   G+  +V+ Y +I+   C+
Sbjct: 433 LMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCK 492

Query: 627 KGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSA 668
            G+I     I++ M    V P+    + +   YV  G ++ A
Sbjct: 493 NGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQA 534



 Score = 75.9 bits (185), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 105/502 (20%), Positives = 193/502 (38%), Gaps = 45/502 (8%)

Query: 228 FSLRKFVWSFTRLRDLKSAYETLQHMVALAMM-GKLYINRTSEGRLRSSRLDIPIPLNAL 286
           FS    +    R      A E    M   A++   +  N   +G ++   L+    L   
Sbjct: 201 FSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQ 260

Query: 287 PVMKVLR---WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRG 343
            V   L+    +++ ++    R    G    L+ +M S  + P     DGF  +I+ D  
Sbjct: 261 MVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVP-----DGFTYSILFDGL 315

Query: 344 LRNG-----MEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRC---TNP 395
            RNG     + +     +N +   D T + L     K  ++ +AE +L  +         
Sbjct: 316 SRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTR 375

Query: 396 KPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQ 454
             ++  +       + E A   F +M+ + ++PD  TY  L              N   +
Sbjct: 376 VIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALI-------------NGLCK 422

Query: 455 VDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---T 511
            +       + M+M  N +  +  +   L+ A G  G + +      + +     P   +
Sbjct: 423 AERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVS 482

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           Y +++++  +  +   A+ I   M    + PNA  YN +ID          A  LV  M 
Sbjct: 483 YGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMK 542

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
            +G  P  +TY  LIK L +     EA  +++ +S   +  D + YNT++   C +G ID
Sbjct: 543 SNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNID 602

Query: 632 VIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEV------- 684
               + ++MH+  ++    T H + SG    G  N     ++ L  +M+   V       
Sbjct: 603 KALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNE----MEYLYQKMMQNNVVPSNAIH 658

Query: 685 STLEEKRSDFEDLILAEDSEAE 706
           + + E  S + + I AED   E
Sbjct: 659 NIMVEAYSKYGNEIKAEDLRKE 680



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 95/465 (20%), Positives = 190/465 (40%), Gaps = 32/465 (6%)

Query: 106 VMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGER---YGIYPILPVYN 162
            +E +  M E+ +  N+  Y  M+    KGG LE      + L ++   +G+ P    YN
Sbjct: 219 AVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAG----FRLRDQMVCHGLKPNAITYN 274

Query: 163 SFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH 222
             L    +   M   +  LD M S+ +  +  TY+ L        +  A+  ++  Y+K+
Sbjct: 275 VLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKN 334

Query: 223 -YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMM-GKLYINRTSEGRLRSSRLDIP 280
             ++  ++    +    +   +  A E LQ +V   ++  ++  N    G  ++  L+  
Sbjct: 335 GVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGA 394

Query: 281 IPLNALPVMKVLR---WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRA 337
                    + ++    +++ +I+   + +    A+ L+++MQ  G+ P+  T++  I A
Sbjct: 395 FSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDA 454

Query: 338 IVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI---SRCTN 394
                 L     VL  MQ+N LKP   +  ++     K  ++  A A+LD +       N
Sbjct: 455 YGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPN 514

Query: 395 PKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFS 453
            + ++A + A       ++A  +  KM+   + P I TY LL     N           S
Sbjct: 515 AQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQ----------S 564

Query: 454 QVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIR---ELIQYFCDSKTPLGTP 510
           Q+  A+    I   ++ + +    +S   L+ A    G I    +L Q            
Sbjct: 565 QISEAEE---IINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVR 621

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCS 555
           TY+ ++  L  A   +    ++++M    + P+ A +NIM++  S
Sbjct: 622 TYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYS 666



 Score = 39.3 bits (90), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 64/338 (18%), Positives = 136/338 (40%), Gaps = 23/338 (6%)

Query: 59  IVDALCRGERSRASHLLLNLGHAHHSLGADDFFH--ILNYCARSPDPLFVMETWRMMEEK 116
           ++  LCR  R   +  LL+   A   +  D F +  + +  +R+ D   ++  +    + 
Sbjct: 276 LLSGLCRAGRMGETSALLDE-MASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKN 334

Query: 117 EIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVH 176
            + + +    +++  LCK G +  A  ++  L    G+ P   +YN+ +    +   +  
Sbjct: 335 GVTIGDYTCSILLNGLCKDGKVSIAEEVLQSL-VNAGLVPTRVIYNTLINGYCQTGELEG 393

Query: 177 ANLCLDLMDSRMVGKNEVTYTELLK-LAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVW 235
           A      M SR +  + +TY  L+  L   ++  +A   + E      + ++ +    + 
Sbjct: 394 AFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLID 453

Query: 236 SFTRLRDLKSAYETLQHMVALAM------MGKLYINRTSEGRLRSSR--LDIPIPLNALP 287
           ++ R   L+  +  L  M    +       G +       G++  +   LD     + LP
Sbjct: 454 AYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLP 513

Query: 288 VMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNG 347
             +V    ++ +I A      +  A  L+ +M+S G+ PS  TY+  I+ + +   +   
Sbjct: 514 NAQV----YNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEA 569

Query: 348 MEVLKIMQQNNLKPQDSTIATLSVEC------SKALEL 379
            E++  +  + L P   +  TL   C       KAL+L
Sbjct: 570 EEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDL 607


>gi|356502394|ref|XP_003520004.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 525

 Score = 80.9 bits (198), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 89/395 (22%), Positives = 166/395 (42%), Gaps = 25/395 (6%)

Query: 283 LNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDR 342
           +N LP  K     F  ++    + ++   A  L+    SLG++P  HT    I  +   +
Sbjct: 1   MNPLPPDKDFATLFGVIV----KMKHYATAISLIKHTYSLGVKPDVHTLTIVINCLCHLK 56

Query: 343 GLRNGMEVLKIMQQNNLKPQDSTIATL----SVECSKALELDLAEALLDQISRCTNPKPF 398
               G  VL  M +  ++P   T ATL      E +       A++L D      +    
Sbjct: 57  HTVFGFSVLGAMFKIGVEPTVVTFATLINGLCAEGNVGAAARFADSLEDMGYESNSYTHG 116

Query: 399 SAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVD-- 456
           +     C   D    AI    K+  +     R ++LL +    +++  ++G +   ++  
Sbjct: 117 TIINGLCKVGDTA-GAISYLEKIEGR----NRGFDLLIAYSTIMDSLCKDGMLCLALNFF 171

Query: 457 SAKRINAIEMDM-ARNNIQHSHISMKNLLKALGAEG-MIRELIQYFCDSKTPLGTPTYNT 514
           S      I+ D+ A N++ H   S     +A    G M+R+ I        P    T+N 
Sbjct: 172 SGMTCKGIQPDLVAYNSLIHGLCSFGRWNEATTLLGNMMRKGIM-------P-NVQTFNV 223

Query: 515 VLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDG 574
           ++ +  +  +  RA  I   M   G+ P+  TYN +I    ++     A  +  +M+  G
Sbjct: 224 LVDNFCKEGKISRAKTIMCFMVHVGVEPDVVTYNSVISGHCLLSQMNDAVKVFELMIHKG 283

Query: 575 FYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIE 634
             P  +TY++LI       + ++A+ +LD +   G+  DV+ ++T++   C+ GR +   
Sbjct: 284 LLPNVVTYSSLIHGWCKTRNINKAIFVLDEMVNNGLNLDVVTWSTLIGGFCKAGRPEAAI 343

Query: 635 FIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAM 669
            +   MH++   P+  TC  +  G   C FH+ A+
Sbjct: 344 ELFCTMHEHHQLPNLQTCAIILDGLFKCQFHSEAI 378



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 75/369 (20%), Positives = 140/369 (37%), Gaps = 21/369 (5%)

Query: 311 LAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLS 370
           LA      M   G+QP    Y+  I  + S         +L  M +  + P   T   L 
Sbjct: 166 LALNFFSGMTCKGIQPDLVAYNSLIHGLCSFGRWNEATTLLGNMMRKGIMPNVQTFNVLV 225

Query: 371 VECSKALELDLAEALL---DQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LR 426
               K  ++  A+ ++     +    +   +++ ++    + +   A+K+F  M  K L 
Sbjct: 226 DNFCKEGKISRAKTIMCFMVHVGVEPDVVTYNSVISGHCLLSQMNDAVKVFELMIHKGLL 285

Query: 427 PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKA 486
           P++ TY  L              + + +  +  +   +  +M  N +    ++   L+  
Sbjct: 286 PNVVTYSSLI-------------HGWCKTRNINKAIFVLDEMVNNGLNLDVVTWSTLIGG 332

Query: 487 LGAEGMIRELIQYFCDSKTPLGTPTYNT---VLHSLVEAQESHRAMEIFKQMKTCGIPPN 543
               G     I+ FC        P   T   +L  L + Q    A+ +F++M+   +  N
Sbjct: 333 FCKAGRPEAAIELFCTMHEHHQLPNLQTCAIILDGLFKCQFHSEAISLFRKMEKMNLELN 392

Query: 544 AATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLD 603
             TYNI++D       F  A  L S +   G     + YT +IK L   G  D+A +LL 
Sbjct: 393 IVTYNIVLDGMCSFGKFNDARELFSCLPSKGIQIDVVAYTTMIKGLCKEGLLDDAEDLLM 452

Query: 604 LVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
            +   G P +   YN +++   ++  I      +  M    +  D +T   + S Y +  
Sbjct: 453 KMEENGCPPNEFTYNVLVRGLLQRYDISRSTKYLMLMKGKGLSADATTTELLIS-YFSAN 511

Query: 664 FHNSAMEAL 672
             NSA++  
Sbjct: 512 KENSALQVF 520



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 104/226 (46%), Gaps = 10/226 (4%)

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLG----TPTYNTVLHSLVEAQ 523
           M +  ++ + ++   L+  L AEG +    + F DS   +G    + T+ T+++ L +  
Sbjct: 68  MFKIGVEPTVVTFATLINGLCAEGNVGAAAR-FADSLEDMGYESNSYTHGTIINGLCKVG 126

Query: 524 ESHRAMEIFKQM--KTCGIPPNAATYNIMIDCC-SIIRCFKSASALVSMMVRDGFYPQTM 580
           ++  A+   +++  +  G     A   IM   C   + C   A    S M   G  P  +
Sbjct: 127 DTAGAISYLEKIEGRNRGFDLLIAYSTIMDSLCKDGMLCL--ALNFFSGMTCKGIQPDLV 184

Query: 581 TYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQM 640
            Y +LI  L  +G ++EA  LL  +  +GI  +V  +N ++   C++G+I   + I+  M
Sbjct: 185 AYNSLIHGLCSFGRWNEATTLLGNMMRKGIMPNVQTFNVLVDNFCKEGKISRAKTIMCFM 244

Query: 641 HQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
               V+PD  T + V SG+      N A++  +++  + L   V T
Sbjct: 245 VHVGVEPDVVTYNSVISGHCLLSQMNDAVKVFELMIHKGLLPNVVT 290


>gi|15240991|ref|NP_198689.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171307|sp|Q9FKR3.1|PP404_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g38730
 gi|10176899|dbj|BAB10131.1| unnamed protein product [Arabidopsis thaliana]
 gi|332006971|gb|AED94354.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 596

 Score = 80.9 bits (198), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 99/496 (19%), Positives = 198/496 (39%), Gaps = 45/496 (9%)

Query: 215 IWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRS 274
           IW D +     S+ S  K +   T+ +  K+A++ L  +    ++    + R+  G +  
Sbjct: 68  IWTDSLPSSKHSLQSSWKMILILTKHKHFKTAHQLLDKLAQRELLSSPLVLRSLVGGVSE 127

Query: 275 SRLDIPIPLNALPVMKVLRWSFSDVI---------------HACGRTQNSGLAEQL---- 315
              D+    + L +        +D I                AC    NS + ++L    
Sbjct: 128 DPEDVSHVFSWLMIYYAKAGMINDSIVVFEQIRSCGLKPHLQACTVLLNSLVKQRLTDTV 187

Query: 316 ---MLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL-SV 371
                +M  LG+  + H Y+  + A           ++L  M++  + P   T  TL SV
Sbjct: 188 WKIFKKMVKLGVVANIHVYNVLVHACSKSGDPEKAEKLLSEMEEKGVFPDIFTYNTLISV 247

Query: 372 ECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPD 428
            C K++  + A ++ D++ R     N   +++F+       +   A ++F +++  +  +
Sbjct: 248 YCKKSMHFE-ALSVQDRMERSGVAPNIVTYNSFIHGFSREGRMREATRLFREIKDDVTAN 306

Query: 429 IRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALG 488
             TY  L   +  +N           +D A R+  +   M         ++  ++L+ L 
Sbjct: 307 HVTYTTLIDGYCRMN----------DIDEALRLREV---MESRGFSPGVVTYNSILRKLC 353

Query: 489 AEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAA 545
            +G IRE   L+      K      T NT++++  + ++   A+++ K+M   G+  +  
Sbjct: 354 EDGRIREANRLLTEMSGKKIEPDNITCNTLINAYCKIEDMVSAVKVKKKMIESGLKLDMY 413

Query: 546 TYNIMI-DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDL 604
           +Y  +I   C ++    +   L SM +  GF P   TY+ L+    +    DE   LL+ 
Sbjct: 414 SYKALIHGFCKVLELENAKEELFSM-IEKGFSPGYATYSWLVDGFYNQNKQDEITKLLEE 472

Query: 605 VSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGF 664
               G+  DV LY  ++++ C+  ++D  + + E M +  +  D      +   Y   G 
Sbjct: 473 FEKRGLCADVALYRGLIRRICKLEQVDYAKVLFESMEKKGLVGDSVIFTTMAYAYWRTGK 532

Query: 665 HNSAMEALQVLSMRML 680
              A     V+  R L
Sbjct: 533 VTEASALFDVMYNRRL 548


>gi|449445409|ref|XP_004140465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g38730-like [Cucumis sativus]
 gi|449518107|ref|XP_004166085.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g38730-like [Cucumis sativus]
          Length = 578

 Score = 80.9 bits (198), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 95/419 (22%), Positives = 184/419 (43%), Gaps = 30/419 (7%)

Query: 277 LDIPIPLNALPVMKVLRW-SFSDVIHACGRTQNSGLAEQLM-------LQMQSLGLQPSS 328
           ++  +P +A+ V++ +R   F   +HAC    NS   ++L         +M  +G+ P+ 
Sbjct: 131 VNCKMPQDAIQVLEYMRLHGFKPNLHACTVLLNSLAKDRLTDTVWKSYKKMIRVGVVPNI 190

Query: 329 HTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL-SVECSKALELDLAEALLD 387
           H Y+  I A      +    +++  M+  ++ P   T  TL S+   K+L  + A  + D
Sbjct: 191 HIYNVLIHACCKSGDVEKAEQLVCEMELKSVFPDLYTYNTLISLYSRKSLHYE-ALCVQD 249

Query: 388 QISRC-TNPK--PFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNA 444
           ++ R   +P    +++ +       K   A+K+F +++  + P+  TY  L   +  VN 
Sbjct: 250 RMERAGVSPDIVTYNSLIYGFCKEGKMREAVKLFREIKD-VSPNHVTYTTLIDGYCRVN- 307

Query: 445 PYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRE---LIQYFC 501
            +EE     +V  AK    + + +A  N         ++L+ L  EG IR+   L+    
Sbjct: 308 DFEEALRLCKVMEAK---GLHLGVATYN---------SVLRKLCEEGRIRDANKLLNEMG 355

Query: 502 DSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFK 561
           + K      T NT++++  +  +   A+++  +M   G+  ++ TY  +I     +R  +
Sbjct: 356 ERKVEPDNVTCNTLINAYCKIGDMKSALKVKSKMLDAGLQLDSFTYKALIHGFCWVRDME 415

Query: 562 SASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTIL 621
           SA  L+  M+  G  P   TY+ L+    + G+    ++LLD    +G   D+ +   ++
Sbjct: 416 SAKELLFCMLDVGLSPGYCTYSWLVDGYCELGNEGAIISLLDEFLTKGYCVDLSVCRALI 475

Query: 622 KKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRML 680
           ++ C + R+   E I   MH   V  D      +   Y   G  N   E L  ++ R L
Sbjct: 476 RRLCHQERVGFAEKIYSTMHLRGVSGDSVIYTSLAYAYWKDGKSNLVSEMLSEMTKRSL 534



 Score = 44.7 bits (104), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 67/286 (23%), Positives = 123/286 (43%), Gaps = 16/286 (5%)

Query: 93  ILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERY 152
           +LN  A+      V ++++ M    +  N   Y +++ A CK G +E+A  L+  + E  
Sbjct: 161 LLNSLAKDRLTDTVWKSYKKMIRVGVVPNIHIYNVLIHACCKSGDVEKAEQLVCEM-ELK 219

Query: 153 GIYPILPVYNSFLGACAKLHSMVHANLCL-DLMDSRMVGKNEVTYTELLKLAVWQKNLSA 211
            ++P L  YN+ +   ++  S+ +  LC+ D M+   V  + VTY  L+     +  +  
Sbjct: 220 SVFPDLYTYNTLISLYSR-KSLHYEALCVQDRMERAGVSPDIVTYNSLIYGFCKEGKMRE 278

Query: 212 VHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAM-MGKLYINRT--- 267
             +++ + IK  S +  +    +  + R+ D + A    + M A  + +G    N     
Sbjct: 279 AVKLFRE-IKDVSPNHVTYTTLIDGYCRVNDFEEALRLCKVMEAKGLHLGVATYNSVLRK 337

Query: 268 --SEGRLRSSRLDIPIPLNALPVMKVL--RWSFSDVIHACGRTQNSGLAEQLMLQMQSLG 323
              EGR+R    D    LN +   KV     + + +I+A  +  +   A ++  +M   G
Sbjct: 338 LCEEGRIR----DANKLLNEMGERKVEPDNVTCNTLINAYCKIGDMKSALKVKSKMLDAG 393

Query: 324 LQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL 369
           LQ  S TY   I      R + +  E+L  M    L P   T + L
Sbjct: 394 LQLDSFTYKALIHGFCWVRDMESAKELLFCMLDVGLSPGYCTYSWL 439


>gi|7413543|emb|CAB86023.1| putative protein [Arabidopsis thaliana]
          Length = 880

 Score = 80.9 bits (198), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 88/463 (19%), Positives = 175/463 (37%), Gaps = 67/463 (14%)

Query: 288 VMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNG 347
           + K  R  F  ++   GR  +   A +   +M++ G+ P+S  Y   I A    R +   
Sbjct: 304 ISKPSRTEFGLMVKFYGRRGDMHRARETFERMRARGITPTSRIYTSLIHAYAVGRDMDEA 363

Query: 348 MEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ---ISRCTNPKPFSAFL-A 403
           +  ++ M++  ++    T + +    SKA   + A+   D+   I +  N   +   + A
Sbjct: 364 LSCVRKMKEEGIEMSLVTYSVIVGGFSKAGHAEAADYWFDEAKRIHKTLNASIYGKIIYA 423

Query: 404 ACDT-----------------MDKP-----------------ERAIKIFAKMRQ-KLRPD 428
            C T                 +D P                 ++ + +F ++++    P 
Sbjct: 424 HCQTCNMERAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEKKGLVVFKRLKECGFTPT 483

Query: 429 IRTYELLFSLFGNVN----------APYEEG------------NMFSQVDSAKRINAIEM 466
           + TY  L +L+  V              EEG            N F ++       A+  
Sbjct: 484 VVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFE 543

Query: 467 DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNT---VLHSLVEAQ 523
           DM +  ++   I   N++ A    G +   IQ   + +     PT  T   ++H   ++ 
Sbjct: 544 DMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSG 603

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
           +  R++E+F  M+ CG  P   T+N +I+     R    A  ++  M   G      TYT
Sbjct: 604 DMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKR---QAVEILDEMTLAGVSANEHTYT 660

Query: 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
            +++     GD  +A      +  EG+  D+  Y  +LK  C+ GR+     + ++M   
Sbjct: 661 KIMQGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACCKSGRMQSALAVTKEMSAR 720

Query: 644 KVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
            +  +    + +  G+   G    A + +Q +    +  ++ T
Sbjct: 721 NIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHT 763



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 103/232 (44%), Gaps = 10/232 (4%)

Query: 456 DSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTV 515
           D AKRI+          I ++H    N+ +A   E ++RE+ +   D+   +    Y+T+
Sbjct: 403 DEAKRIHKTLNASIYGKIIYAHCQTCNMERA---EALVREMEEEGIDAPIAI----YHTM 455

Query: 516 LHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGF 575
           +       +  + + +FK++K CG  P   TY  +I+  + +     A  +  +M  +G 
Sbjct: 456 MDGYTMVADEKKGLVVFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGV 515

Query: 576 YPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEF 635
                TY+ +I   +   D+  A  + + +  EG+  DV+LYN I+   C  G +D    
Sbjct: 516 KHNLKTYSMMINGFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQ 575

Query: 636 IIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTL 687
            +++M + + +P   T   +  GY   G       +L+V  M   C  V T+
Sbjct: 576 TVKEMQKLRHRPTTRTFMPIIHGYAKSG---DMRRSLEVFDMMRRCGCVPTV 624



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 112/564 (19%), Positives = 222/564 (39%), Gaps = 71/564 (12%)

Query: 153 GIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAV 212
           GI P   +Y S + A A    M  A  C+  M    +  + VTY+ ++     +   +  
Sbjct: 339 GITPTSRIYTSLIHAYAVGRDMDEALSCVRKMKEEGIEMSLVTYSVIVG-GFSKAGHAEA 397

Query: 213 HEIWEDYIK--HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEG 270
            + W D  K  H +L+     K +++  +  +++ A   ++ M               EG
Sbjct: 398 ADYWFDEAKRIHKTLNASIYGKIIYAHCQTCNMERAEALVREM-------------EEEG 444

Query: 271 RLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHT 330
                 +D PI      +   +   ++ V       +  GL   +  +++  G  P+  T
Sbjct: 445 ------IDAPI-----AIYHTMMDGYTMVAD-----EKKGLV--VFKRLKECGFTPTVVT 486

Query: 331 YDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALEL-DLAEALL--- 386
           Y   I        +   +EV ++M++  +K     + T S+  +  ++L D A A     
Sbjct: 487 YGCLINLYTKVGKISKALEVSRVMKEEGVK---HNLKTYSMMINGFVKLKDWANAFAVFE 543

Query: 387 DQISRCTNPKP--FSAFLAACDTMDKPERAIKIFAKMRQKL--RPDIRTYELL---FSLF 439
           D +     P    ++  ++A   M   +RAI+   +M QKL  RP  RT+  +   ++  
Sbjct: 544 DMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEM-QKLRHRPTTRTFMPIIHGYAKS 602

Query: 440 GNVNAPYEEGNMFSQ---VDSAKRINAI---------------EMDMARNNI-QHSHISM 480
           G++    E  +M  +   V +    N +               EM +A  +  +H++  +
Sbjct: 603 GDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQAVEILDEMTLAGVSANEHTYTKI 662

Query: 481 KNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGI 540
                ++G  G   E      +    +   TY  +L +  ++     A+ + K+M    I
Sbjct: 663 MQGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACCKSGRMQSALAVTKEMSARNI 722

Query: 541 PPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALN 600
           P N+  YNI+ID  +       A+ L+  M ++G  P   TYT+ I      GD + A  
Sbjct: 723 PRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQ 782

Query: 601 LLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYV 660
            ++ +   G+  ++  Y T++K        +      E+M    ++PD +  H + +  +
Sbjct: 783 TIEEMEALGVKPNIKTYTTLIKGWARASLPEKALSCYEEMKAMGIKPDKAVYHCLLTSLL 842

Query: 661 NCGFHNSAMEALQVLSMRMLCEEV 684
           +     S  EA     +  +C+E+
Sbjct: 843 S---RASIAEAYIYSGVMTICKEM 863



 Score = 52.8 bits (125), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 84/449 (18%), Positives = 173/449 (38%), Gaps = 39/449 (8%)

Query: 120 LNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANL 179
           LN   Y  ++ A C+   +E A  L+  + E  GI   + +Y++ +     +       +
Sbjct: 412 LNASIYGKIIYAHCQTCNMERAEALVREM-EEEGIDAPIAIYHTMMDGYTMVADEKKGLV 470

Query: 180 CLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEI----WEDYIKHYSLSIFSLRKFVW 235
               +         VTY  L+ L      +S   E+     E+ +KH +L  +S+   + 
Sbjct: 471 VFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKH-NLKTYSM--MIN 527

Query: 236 SFTRLRDLKSAYETLQHMVALAMMGKLYI-NRTSEGRLRSSRLDIPIPLNALPVMKVLRW 294
            F +L+D  +A+   + MV   M   + + N           +D  I    +  M+ LR 
Sbjct: 528 GFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAI--QTVKEMQKLRH 585

Query: 295 -----SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGME 349
                +F  +IH   ++ +   + ++   M+  G  P+ HT++G I  +V  R     +E
Sbjct: 586 RPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKR---QAVE 642

Query: 350 VLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPK------PFSAFLA 403
           +L  M    +   + T   +    +   +   A    +  +R  N         + A L 
Sbjct: 643 ILDEMTLAGVSANEHTYTKIMQGYASVGDTGKA---FEYFTRLQNEGLDVDIFTYEALLK 699

Query: 404 ACDTMDKPERAIKIFAKMRQKLRP-DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRIN 462
           AC    + + A+ +  +M  +  P +   Y +L   +      +E  ++  Q+    +  
Sbjct: 700 ACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQM----KKE 755

Query: 463 AIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEA 522
            ++ D+      H++ S  +     G      + I+            TY T++     A
Sbjct: 756 GVKPDI------HTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGWARA 809

Query: 523 QESHRAMEIFKQMKTCGIPPNAATYNIMI 551
               +A+  +++MK  GI P+ A Y+ ++
Sbjct: 810 SLPEKALSCYEEMKAMGIKPDKAVYHCLL 838



 Score = 49.7 bits (117), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 52/222 (23%), Positives = 94/222 (42%), Gaps = 24/222 (10%)

Query: 2   YRPLLRTRFQLIADSFCKSKFHKH--ERRNVANKLELSRTLTTTMGLNEESISKATQMQI 59
           +RP  RT F  I   + KS   +   E  ++  +     T+ T  GL    + K   ++I
Sbjct: 585 HRPTTRT-FMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQAVEI 643

Query: 60  VDALCRGERSRASHLLLNLGHAHHSLG----ADDFF----------------HILNYCAR 99
           +D +     S   H    +   + S+G    A ++F                 +L  C +
Sbjct: 644 LDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACCK 703

Query: 100 SPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILP 159
           S      +   + M  + I  N+  Y +++    + G + EA++LI  + ++ G+ P + 
Sbjct: 704 SGRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQM-KKEGVKPDIH 762

Query: 160 VYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLK 201
            Y SF+ AC+K   M  A   ++ M++  V  N  TYT L+K
Sbjct: 763 TYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIK 804


>gi|449439615|ref|XP_004137581.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Cucumis sativus]
          Length = 857

 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 83/400 (20%), Positives = 160/400 (40%), Gaps = 55/400 (13%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +F+ +IH   +  N   +E+L  ++   G+ P+  T++ FI+ +     +     +L+ +
Sbjct: 218 TFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESI 277

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPKPFS------AFLAACDT 407
               L P   +  TL     K  +L  AE  L + ++    P  F+       F  A   
Sbjct: 278 VSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKA-GM 336

Query: 408 MDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMD 467
           M   ++ ++    M +   PD  TY  L      +N    +G+M        R  A+  +
Sbjct: 337 MQNADKILR--DAMFKGFIPDEFTYSSL------INGLCNDGDM-------NRAMAVFYE 381

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHR 527
                 +HS I    L+K L  +G++ +                                
Sbjct: 382 AMEKGFKHSIILYNTLVKGLSKQGLVLQ-------------------------------- 409

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A+++ K M   G  P+  TYN++++    + C   A+ +++  +  G  P   T+  LI 
Sbjct: 410 ALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLID 469

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
                 + D+A+ +LD +   GI  DV+ YNT+L   C+  ++D +    + M +    P
Sbjct: 470 GYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTP 529

Query: 648 DPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTL 687
           +  T + +   +      + AME  + +  R L  ++ TL
Sbjct: 530 NIITYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTL 569



 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 115/556 (20%), Positives = 220/556 (39%), Gaps = 35/556 (6%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y  +M  L + GY  +A   +Y   +  GIYP +  +   + +         A   L+ M
Sbjct: 114 YNAIMNILVEYGYFSQAHK-VYMRMKDIGIYPDVYTHTIRMKSFCITGRPTAALRLLNNM 172

Query: 185 DSRMVGKNEVTYTELLKLAVWQKN--LSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRD 242
             +    N V+Y  ++    +++N  + A H   E   +     I +  K +    +  +
Sbjct: 173 PGQGCEFNAVSYCAVIS-GFYKENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKKGN 231

Query: 243 LKSAYETLQHMVALAMMGKLY-INRTSEGRLRSSRLDIPIPLNALPVMKVLR---WSFSD 298
           ++ + +    ++   +   L+  N   +G  R   +D    L    V + L     S++ 
Sbjct: 232 VQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNT 291

Query: 299 VIHACGRTQNSGL--AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQ 356
           +I  CG  ++S L  AE  + +M + G++P+  TY+  I        ++N  ++L+    
Sbjct: 292 LI--CGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMF 349

Query: 357 NNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPE---- 412
               P + T ++L        +++ A A+  +       K F   +   +T+ K      
Sbjct: 350 KGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAME----KGFKHSIILYNTLVKGLSKQG 405

Query: 413 ---RAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
              +A+++   M +    PDI TY L+ +    +    +   + +   +   I  I    
Sbjct: 406 LVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDI---F 462

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRA 528
             N +   +   +N+ KA+       E++             TYNT+L+ L +A++    
Sbjct: 463 TFNTLIDGYCKQRNMDKAI-------EILDTMLSHGITPDVITYNTLLNGLCKARKLDNV 515

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
           ++ FK M   G  PN  TYNI+I+     R    A  L   M   G  P  +T   LI  
Sbjct: 516 VDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICG 575

Query: 589 LLDYGDFDEALNLLDLVSLE-GIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
           L   G+ D+A  L   +  E    +   ++N ++   CEK  + + E +  +M  +   P
Sbjct: 576 LCSNGELDKAYELFVTIEKEYKFSYSTAIFNIMINAFCEKLNVSMAEKLFHKMGGSDCAP 635

Query: 648 DPSTCHFVFSGYVNCG 663
           D  T   +   Y   G
Sbjct: 636 DNYTYRVMIDSYCKTG 651



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 77/163 (47%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           +Y  V+    +      A  +F +M   GI P+  T+N +I         + +  L S +
Sbjct: 183 SYCAVISGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKV 242

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           ++ G  P   T+   I+ L   G  DEA  LL+ +  EG+  DV+ YNT++   C+  ++
Sbjct: 243 MKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKL 302

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
              E  + +M  + V+P+  T + + +G+   G   +A + L+
Sbjct: 303 VEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILR 345



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 66/310 (21%), Positives = 131/310 (42%), Gaps = 38/310 (12%)

Query: 389 ISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK--LRPDIRTYELLFSLFGNVNAPY 446
           ++R   PK  +A +      + P  A+K+F +++ +   +  + TY+ +    G ++  +
Sbjct: 1   MNRALQPKHVAAVIRY---QNDPLNALKMFNQVKTEDGFKHTLETYKCMIEKLG-LHGKF 56

Query: 447 EE-----GNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYF- 500
           E        M   VDS K +  + + + R+                G +G ++E +  F 
Sbjct: 57  EAMEDVLAEMRKNVDS-KMLEGVYIGIMRD---------------YGRKGKVQEAVNVFE 100

Query: 501 ------CDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCC 554
                 C+        +YN +++ LVE     +A +++ +MK  GI P+  T+ I +   
Sbjct: 101 RMDFYDCEP----SVQSYNAIMNILVEYGYFSQAHKVYMRMKDIGIYPDVYTHTIRMKSF 156

Query: 555 SIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDV 614
            I     +A  L++ M   G     ++Y A+I          EA +L D +  +GI  D+
Sbjct: 157 CITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQGICPDI 216

Query: 615 LLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQV 674
           L +N ++   C+KG +   E +  ++ +  V P+  T +    G    G  + A   L+ 
Sbjct: 217 LTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLES 276

Query: 675 LSMRMLCEEV 684
           +    L  +V
Sbjct: 277 IVSEGLTPDV 286


>gi|357499033|ref|XP_003619805.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494820|gb|AES76023.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 548

 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 78/371 (21%), Positives = 156/371 (42%), Gaps = 22/371 (5%)

Query: 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
           + S+  +I+   +      A QL+ ++    +QP++  Y+  I  +   + + +  ++  
Sbjct: 166 QVSYGTLINGLCKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYS 225

Query: 353 IMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR-CTNPKPFSAFL---AACDTM 408
            M    + P   T   L    S   +L+ A  L +++ +   NP  ++  +     C   
Sbjct: 226 QMVAKRICPDVFTYNALISGFSAVSKLNYAIDLFNKMKKENINPNVYTFNILVDGFCKEG 285

Query: 409 DKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
              +  + +   M+  ++PD+ TY  L   + ++N   +  ++F  + S   I  +++  
Sbjct: 286 KVNDAKVVLAIMMKDDIKPDVVTYNSLMDGYCSINKVNKAKDIFDSMASGGVIANVQI-- 343

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRELIQYF----CDSKTPLGTPTYNTVLHSLVEAQE 524
                   + +M N         M+ E I  F    C    P    TY++++  L +   
Sbjct: 344 --------YTTMVN---GFCKIKMVDEAINLFEEMRCRKIIP-NVVTYSSLIDGLCKLGR 391

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
              A+++  +M   G PPN  TY+ ++D          A AL++ +   G  P   TYT 
Sbjct: 392 IFYALKLVDEMHDRGQPPNIVTYSSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTI 451

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
           LIK L   G  ++A N+ + + ++G   DV  Y  +++  C+KG  D    ++ +M  N 
Sbjct: 452 LIKGLCQSGRLEDAQNVFEDLLVKGYNLDVYAYTVMIQGFCDKGFFDKALALLSKMEDNG 511

Query: 645 VQPDPSTCHFV 655
             P+  T   V
Sbjct: 512 CIPNAKTYELV 522



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 92/186 (49%)

Query: 509 TPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVS 568
           T  +N +L SLV+A+    A+ + +QM+  GI  +  T+NI+I+C S +     + ++ +
Sbjct: 61  TFQFNKILSSLVKAKHHSTALSLHQQMELNGIESDFFTFNILINCFSQLGLNSLSFSIFA 120

Query: 569 MMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
            +++ G++P  +T+  LIK L   G   +AL+  D V  +G   D + Y T++   C+ G
Sbjct: 121 KILKKGYHPTAITFNTLIKGLCLKGHIHQALHFHDKVVAQGFHLDQVSYGTLINGLCKVG 180

Query: 629 RIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLE 688
           RI     +++++    VQP+    + +          N A +    +  + +C +V T  
Sbjct: 181 RITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKRICPDVFTYN 240

Query: 689 EKRSDF 694
              S F
Sbjct: 241 ALISGF 246



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/213 (20%), Positives = 89/213 (41%), Gaps = 3/213 (1%)

Query: 477 HISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPT---YNTVLHSLVEAQESHRAMEIFK 533
            +S   L+  L   G I   +Q        L  P    YN ++ ++ +A+  + A +++ 
Sbjct: 166 QVSYGTLINGLCKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYS 225

Query: 534 QMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYG 593
           QM    I P+  TYN +I   S +     A  L + M ++   P   T+  L+      G
Sbjct: 226 QMVAKRICPDVFTYNALISGFSAVSKLNYAIDLFNKMKKENINPNVYTFNILVDGFCKEG 285

Query: 594 DFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCH 653
             ++A  +L ++  + I  DV+ YN+++   C   +++  + I + M    V  +     
Sbjct: 286 KVNDAKVVLAIMMKDDIKPDVVTYNSLMDGYCSINKVNKAKDIFDSMASGGVIANVQIYT 345

Query: 654 FVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
            + +G+      + A+   + +  R +   V T
Sbjct: 346 TMVNGFCKIKMVDEAINLFEEMRCRKIIPNVVT 378


>gi|326505340|dbj|BAK03057.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326511084|dbj|BAJ91889.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518326|dbj|BAJ88192.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518558|dbj|BAJ88308.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 556

 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 96/406 (23%), Positives = 165/406 (40%), Gaps = 31/406 (7%)

Query: 285 ALPVMKVLRWSFSDVIHA-CGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRG 343
           A+P M+   ++++ +I   CGR +    A  ++  M   G  P   TY   + A     G
Sbjct: 145 AMP-MEPDTYTYNTLIRGLCGRGRTDN-ALAVLDDMLRRGCVPDVVTYTILLEATCKRSG 202

Query: 344 LRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR--C-TNPKPFSA 400
            +  +++L  M+     P   T   +     +   +D A   L  +    C  N   ++ 
Sbjct: 203 YKQAVKLLDEMRDKGCAPDIVTYNVVVNGICQEGRVDDAMEFLKSLPSYGCEPNTVSYNI 262

Query: 401 FLAACDTMDKPERAIKIFAKMRQKLRP-DIRTYELLFSLF---GNVNAPYEEGNMFSQVD 456
            L    T ++ E A K+ A+M +K RP ++ T+ +L S     G V    E       +D
Sbjct: 263 VLKGLCTAERWEDAEKLMAEMSRKGRPPNVVTFNMLISFLCRRGLVEPAME------ILD 316

Query: 457 SAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVL 516
              +       ++ N I H+    K + +A+         ++    S       +YNT+L
Sbjct: 317 QIPKYGCTPNSLSYNPILHAFCKQKKMDRAMA-------FVELMVSSGCYPDIVSYNTLL 369

Query: 517 HSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFY 576
            +L    E   A+E+  Q+K  G  P   +YN +ID  +     + A  L++ MV  G  
Sbjct: 370 TALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTEEALELLNEMVTKGLQ 429

Query: 577 PQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEK----GRIDV 632
           P  +TY+ +   L   G  +EA+     V   GI  + +LYN IL   C++      ID+
Sbjct: 430 PDIITYSTISSGLCREGRIEEAIKAFCKVQDMGIRPNTVLYNAILLGLCKRRATHSAIDL 489

Query: 633 IEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678
             +++     N   P+ ST   +  G    G    A E +  L  R
Sbjct: 490 FTYMV----SNGCMPNESTYTILIEGLAYEGLVKEAREMMAELCSR 531



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 81/397 (20%), Positives = 144/397 (36%), Gaps = 83/397 (20%)

Query: 319 MQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALE 378
           + ++ ++P ++TY+  IR +       N + VL  M +    P   T             
Sbjct: 143 VAAMPMEPDTYTYNTLIRGLCGRGRTDNALAVLDDMLRRGCVPDVVT------------- 189

Query: 379 LDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFS 437
                              ++  L A       ++A+K+  +MR K   PDI TY ++  
Sbjct: 190 -------------------YTILLEATCKRSGYKQAVKLLDEMRDKGCAPDIVTYNVV-- 228

Query: 438 LFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELI 497
               VN   +EG    +VD A                                  ++ L 
Sbjct: 229 ----VNGICQEG----RVDDAMEF-------------------------------LKSLP 249

Query: 498 QYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSII 557
            Y C+  T     +YN VL  L  A+    A ++  +M   G PPN  T+N++I      
Sbjct: 250 SYGCEPNTV----SYNIVLKGLCTAERWEDAEKLMAEMSRKGRPPNVVTFNMLISFLCRR 305

Query: 558 RCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLY 617
              + A  ++  + + G  P +++Y  ++         D A+  ++L+   G   D++ Y
Sbjct: 306 GLVEPAMEILDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSSGCYPDIVSY 365

Query: 618 NTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSM 677
           NT+L   C  G +D    ++ Q+      P   + + V  G    G    A+E L  +  
Sbjct: 366 NTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTEEALELLNEMVT 425

Query: 678 RMLCEEVSTLEEKRSDFEDLILAEDSEAESRILQFCE 714
           + L  ++ T     S      L  +   E  I  FC+
Sbjct: 426 KGLQPDIITYSTISSG-----LCREGRIEEAIKAFCK 457



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 67/282 (23%), Positives = 120/282 (42%), Gaps = 20/282 (7%)

Query: 398 FSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLF-SLFGNVNAPYEEGNMFSQVD 456
           ++A +A      + + A ++ A M   + PD  TY  L   L G             + D
Sbjct: 123 YNAMVAGYCVTGQLDNARRLVAAM--PMEPDTYTYNTLIRGLCGR-----------GRTD 169

Query: 457 SAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYN 513
           +A    A+  DM R       ++   LL+A       ++ ++   + +     P   TYN
Sbjct: 170 NAL---AVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAVKLLDEMRDKGCAPDIVTYN 226

Query: 514 TVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRD 573
            V++ + +      AME  K + + G  PN  +YNI++        ++ A  L++ M R 
Sbjct: 227 VVVNGICQEGRVDDAMEFLKSLPSYGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSRK 286

Query: 574 GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVI 633
           G  P  +T+  LI  L   G  + A+ +LD +   G   + L YN IL   C++ ++D  
Sbjct: 287 GRPPNVVTFNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPILHAFCKQKKMDRA 346

Query: 634 EFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
              +E M  +   PD  + + + +     G  ++A+E L  L
Sbjct: 347 MAFVELMVSSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQL 388



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 72/308 (23%), Positives = 130/308 (42%), Gaps = 31/308 (10%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL-S 370
           A + +  + S G +P++ +Y+  ++ + +     +  +++  M +    P   T   L S
Sbjct: 241 AMEFLKSLPSYGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSRKGRPPNVVTFNMLIS 300

Query: 371 VECSKALELDLAEALLDQISR--CT-NPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLR 426
             C + L ++ A  +LDQI +  CT N   ++  L A     K +RA+     M      
Sbjct: 301 FLCRRGL-VEPAMEILDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSSGCY 359

Query: 427 PDIRTYELLFSLF---GNVNAPYEEGNMFSQ-----------------VDSAKRINAIEM 466
           PDI +Y  L +     G V+A  E  +                       + K   A+E+
Sbjct: 360 PDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTEEALEL 419

Query: 467 --DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFC---DSKTPLGTPTYNTVLHSLVE 521
             +M    +Q   I+   +   L  EG I E I+ FC   D      T  YN +L  L +
Sbjct: 420 LNEMVTKGLQPDIITYSTISSGLCREGRIEEAIKAFCKVQDMGIRPNTVLYNAILLGLCK 479

Query: 522 AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMT 581
            + +H A+++F  M + G  PN +TY I+I+  +     K A  +++ +   G   +T+ 
Sbjct: 480 RRATHSAIDLFTYMVSNGCMPNESTYTILIEGLAYEGLVKEAREMMAELCSRGVVSKTLV 539

Query: 582 YTALIKIL 589
               I++L
Sbjct: 540 NKGAIRLL 547


>gi|30840327|emb|CAD61286.1| fertility restorer homologue [Raphanus sativus]
 gi|134302843|gb|ABO70665.1| restorer-of-fertility [Raphanus sativus]
 gi|157931526|gb|ABW04887.1| PPR [Raphanus sativus]
 gi|194295008|gb|ABO70666.2| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 127/623 (20%), Positives = 245/623 (39%), Gaps = 54/623 (8%)

Query: 89  DFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFL 148
           DF  ++    R   P  V+  ++ ME K+I  +   + ++++  C    L  A +    +
Sbjct: 81  DFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKI 140

Query: 149 GERYGIYPILPVYNSFL-GACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQK 207
             + G++P +  +N+ L G C +       NL   + ++     N VT+T L+     + 
Sbjct: 141 -TKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETT-CRPNVVTFTTLMNGLCREG 198

Query: 208 NL----SAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAY------ETLQHMVALA 257
            +    + +  + ED ++   ++  ++   V    +  D  SA       E + H++   
Sbjct: 199 RIVEAVALLDRMMEDGLQPTQITYGTI---VDGMCKKGDTVSALNLLRKMEEVSHIIPNV 255

Query: 258 MMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLML 317
           ++    I+   +    S   ++   +    +   L    S ++  C   + S  AEQL+ 
Sbjct: 256 VIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSD-AEQLLQ 314

Query: 318 QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKAL 377
           +M    + P   TY+  I A V +       E+   M    + P   T +++     K  
Sbjct: 315 EMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQN 374

Query: 378 ELDLAEAL--LDQISRCT-NPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYE 433
            LD AE +  L     C+ N   F+  +       + +  +++  +M +  L  D  TY 
Sbjct: 375 RLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYN 434

Query: 434 LL---FSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAE 490
            L   F L G++NA  +                +  +M  + +    ++   LL  L   
Sbjct: 435 TLIHGFYLVGDLNAALD----------------LLQEMISSGLCPDIVTCDTLLDGLCDN 478

Query: 491 GMIRELIQYF---------CDSKTPLG-----TPTYNTVLHSLVEAQESHRAMEIFKQMK 536
           G +++ ++ F          D+  P         TYN ++  L+   +   A E++++M 
Sbjct: 479 GKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMP 538

Query: 537 TCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFD 596
             GI P+  TY+ MID          A+ +   M    F P  +T+T LI      G  D
Sbjct: 539 HRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVD 598

Query: 597 EALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVF 656
           + L L   +   GI  + + Y T++    + G I+    I ++M  + V PD  T   + 
Sbjct: 599 DGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNML 658

Query: 657 SGYVNCGFHNSAMEALQVLSMRM 679
           +G  +      A+  L+ L M M
Sbjct: 659 TGLWSKEELKRAVAMLEKLQMSM 681



 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 94/412 (22%), Positives = 168/412 (40%), Gaps = 34/412 (8%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +F+ ++H          A  L  QM     +P+  T+   +  +  +  +   + +L  M
Sbjct: 151 TFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRM 210

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP-FSAFLAACDTMDKPER 413
            ++ L+P   T  T+     K  +   A  LL ++   ++  P    + A  D++ K  R
Sbjct: 211 MEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGR 270

Query: 414 ---AIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
              A  +F +M++K + PD+ TY  +   F + +  + +     Q            +M 
Sbjct: 271 HSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCS-SGRWSDAEQLLQ------------EML 317

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLG----TPTYNTVLHSLVEAQES 525
              I    ++   L+ A   EG   E  + + D   P G    T TY++++    +    
Sbjct: 318 ERKISPDVVTYNALINAFVKEGKFFEAEELY-DEMLPRGIIPNTITYSSMIDGFCKQNRL 376

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
             A  +F  M T G  PN  T+N +ID     +       L+  M   G    T TY  L
Sbjct: 377 DAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTL 436

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI-DVIE-FIIEQMHQ- 642
           I      GD + AL+LL  +   G+  D++  +T+L   C+ G++ D +E F + Q  + 
Sbjct: 437 IHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKK 496

Query: 643 --------NKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
                   N V+PD  T + + SG +N G    A E  + +  R +  +  T
Sbjct: 497 DLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTIT 548



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 84/431 (19%), Positives = 169/431 (39%), Gaps = 65/431 (15%)

Query: 272 LRSSRLDIPIPLNALPVMKVLR---WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSS 328
           +R  R D+ I L      K +R   +SF+ +I           A     ++  LGL P  
Sbjct: 90  VRMERPDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDV 149

Query: 329 HTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ 388
            T++  +  +  +  +   + +   M +   +P   T  TL     +   +  A ALLD+
Sbjct: 150 VTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDR 209

Query: 389 ISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEE 448
           +                               M   L+P   TY  +      V+   ++
Sbjct: 210 M-------------------------------MEDGLQPTQITYGTI------VDGMCKK 232

Query: 449 GNMFSQVDSAKRINAIEMDMARNNIQHS-----------HISMKNLLKALGAEGMIRELI 497
           G+  S ++  +++  +   +  N + +S           H   +NL   +  +G+  +L 
Sbjct: 233 GDTVSALNLLRKMEEVS-HIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLF 291

Query: 498 QYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSII 557
                        TYN+++     +     A ++ ++M    I P+  TYN +I+     
Sbjct: 292 -------------TYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKE 338

Query: 558 RCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLY 617
             F  A  L   M+  G  P T+TY+++I         D A ++  L++ +G   +++ +
Sbjct: 339 GKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITF 398

Query: 618 NTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSM 677
           NT++   C   RID    ++ +M +  +  D +T + +  G+   G  N+A++ LQ +  
Sbjct: 399 NTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMIS 458

Query: 678 RMLCEEVSTLE 688
             LC ++ T +
Sbjct: 459 SGLCPDIVTCD 469



 Score = 43.1 bits (100), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 78/170 (45%), Gaps = 12/170 (7%)

Query: 519 LVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC-CSIIRCFKSASALVSM--MVRDGF 575
           +V  +     + ++++M+   I  +  ++ I+I C CS   C K   AL +   + + G 
Sbjct: 89  VVRMERPDLVISLYQKMERKQIRCDIYSFTILIKCFCS---CSKLPFALSTFGKITKLGL 145

Query: 576 YPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEF 635
           +P  +T+  L+  L       EALNL   +       +V+ + T++   C +GRI     
Sbjct: 146 HPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVA 205

Query: 636 IIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVS 685
           ++++M ++ +QP   T   +  G    G   SA+  L+ +      EEVS
Sbjct: 206 LLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKM------EEVS 249


>gi|297737331|emb|CBI26532.3| unnamed protein product [Vitis vinifera]
          Length = 441

 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 76/366 (20%), Positives = 147/366 (40%), Gaps = 65/366 (17%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQ----DSTIA 367
           AE +++    LGL P   TY+  + A     G+     V+  M++  + P     +S IA
Sbjct: 26  AEAVVIDGIRLGLLPDVVTYNTLLSAYSRFVGIDAAYSVIHRMKEAGISPDVITYNSLIA 85

Query: 368 TLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRP 427
             +  C  +  LDL E +L                                   R  +RP
Sbjct: 86  AATKRCLLSRSLDLFEEML-----------------------------------RTGIRP 110

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL 487
           D+ +Y  L       N           + S+   N +   +  N      +S   L + L
Sbjct: 111 DVWSYNSLMHYIILTNL----------LPSSSTFNIMINGLCNNGYTGYALS---LYRYL 157

Query: 488 GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATY 547
             +G + EL+             TYN +++ L ++++ + A  I +++   G  P+A TY
Sbjct: 158 QRQGFVPELV-------------TYNILINGLCKSRKLNAARRILRELGESGNVPDAITY 204

Query: 548 NIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSL 607
             ++ CC   R F+    + S M   G+     +Y A+I  L   G  +EA ++++ ++ 
Sbjct: 205 TTVMKCCFRSRQFEQGFEIFSEMKSKGYAFDAFSYCAVIAALTKTGRLEEANDIMEQMAR 264

Query: 608 EGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNS 667
             I  D++ YNT++   C  G+++    +++++ ++ ++ D  T   +  G    G    
Sbjct: 265 SDIDLDIVSYNTVMNLYCRNGKLEATYKLLDEIEEHGLECDEYTHTILIDGLCKAGNVEG 324

Query: 668 AMEALQ 673
           A+  L+
Sbjct: 325 ALRHLK 330



 Score = 66.2 bits (160), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 107/500 (21%), Positives = 198/500 (39%), Gaps = 85/500 (17%)

Query: 127 LMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDS 186
           + + +LCK G LE+A  ++   G R G+ P +  YN+ L A ++   +  A   +  M  
Sbjct: 12  ICIASLCKVGQLEKAEAVV-IDGIRLGLLPDVVTYNTLLSAYSRFVGIDAAYSVIHRMKE 70

Query: 187 RMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSA 246
             +  + +TY  L+  A  +  LS   +++E+ ++        +R  VWS          
Sbjct: 71  AGISPDVITYNSLIAAATKRCLLSRSLDLFEEMLRT------GIRPDVWS---------- 114

Query: 247 YETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRT 306
           Y +L H + L                           N LP       +F+ +I+     
Sbjct: 115 YNSLMHYIILT--------------------------NLLPSSS----TFNIMINGLCNN 144

Query: 307 QNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTI 366
             +G A  L   +Q  G  P   TY+  I  +   R L     +L+ + ++   P   T 
Sbjct: 145 GYTGYALSLYRYLQRQGFVPELVTYNILINGLCKSRKLNAARRILRELGESGNVPDAITY 204

Query: 367 ATLSVECSKALELDLAEALLDQISRCTNPKPFSAF-----LAACDTMDKPERAIKIFAKM 421
            T+   C ++ + +    +  ++   +    F AF     +AA     + E A  I  +M
Sbjct: 205 TTVMKCCFRSRQFEQGFEIFSEMK--SKGYAFDAFSYCAVIAALTKTGRLEEANDIMEQM 262

Query: 422 -RQKLRPDIRTYELLFSLF---GNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSH 477
            R  +  DI +Y  + +L+   G + A Y+   +  +++     + +E D      +++H
Sbjct: 263 ARSDIDLDIVSYNTVMNLYCRNGKLEATYK---LLDEIEE----HGLECD------EYTH 309

Query: 478 -ISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTY----NTVLHSLVEAQESHRAMEIF 532
            I +  L KA   EG +R L      + T +G  +     N V+  L +  +   A+++F
Sbjct: 310 TILIDGLCKAGNVEGALRHL-----KNMTKMGFDSTLVAQNCVIDGLCKVGQLDHAIKMF 364

Query: 533 KQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDY 592
             M+      ++ TY+ M+      R ++ AS L+   +R G         ++I  L   
Sbjct: 365 ASMEV----KDSFTYSSMVHNLCKARRYRHASRLLLACLRGGMKILRANQRSVIDGLCYS 420

Query: 593 GDFDEALNLLDLVSLEGIPH 612
           G   EA  L   + L  I H
Sbjct: 421 GYTSEARRLKSKIRLARILH 440



 Score = 43.1 bits (100), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 39/178 (21%), Positives = 71/178 (39%), Gaps = 16/178 (8%)

Query: 509 TPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVS 568
           T   N  + SL +  +  +A  +       G+ P+  TYN ++   S      +A +++ 
Sbjct: 7   TKLLNICIASLCKVGQLEKAEAVVIDGIRLGLLPDVVTYNTLLSAYSRFVGIDAAYSVIH 66

Query: 569 MMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
            M   G  P  +TY +LI           +L+L + +   GI  DV  YN+++       
Sbjct: 67  RMKEAGISPDVITYNSLIAAATKRCLLSRSLDLFEEMLRTGIRPDVWSYNSLM------- 119

Query: 629 RIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
                 +II       + P  ST + + +G  N G+   A+   + L  +    E+ T
Sbjct: 120 -----HYII----LTNLLPSSSTFNIMINGLCNNGYTGYALSLYRYLQRQGFVPELVT 168


>gi|297808589|ref|XP_002872178.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318015|gb|EFH48437.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 568

 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 80/391 (20%), Positives = 168/391 (42%), Gaps = 22/391 (5%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           S++ ++ A    +  G    ++ +++  G +P S  ++  I A      + + ++ L  M
Sbjct: 76  SYTTLLAAMTVQKQYGSLSSIVSEVEQSGTKPDSIFFNAVINAFSESGNMEDAVQALLKM 135

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLD------QISRCTNPKPFSAFLAACDTM 408
           ++  L P  ST  TL      A + + + ALLD       +    N + F+  + A    
Sbjct: 136 KELGLNPTTSTYNTLIKGYGIAGKPERSSALLDLMLEESNVDVRPNIRTFNVLVQAWCKK 195

Query: 409 DKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMD 467
            K E A ++  KM +  +RPD  TY  + + +       ++G    + +S      +  +
Sbjct: 196 KKVEEAWEVVHKMEECGVRPDTVTYNTIATCY------VQKGETV-RAESEVVEKMVMKE 248

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQE 524
            A+ N +   I +    +    EG +R+    ++   + +       +N++++  VE  +
Sbjct: 249 KAKPNGRTCGIVVGGYCR----EGRVRDGLRFVRRMKEMRVEANLVVFNSLINGFVEVMD 304

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
                E+   MK C +  +  TY+ +++  S     + A+ +   MV+ G  P    Y+ 
Sbjct: 305 RDGIDEVLTLMKECNVKADVITYSTVMNAWSSAGYMEKAAQVFKEMVKAGVKPDAHAYSI 364

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
           L K  +   +  +A  LL+ + +E  P +V+++ T++   C  G +D    +  +M +  
Sbjct: 365 LAKGYVRAKEPKKAEELLETLIVESRP-NVVIFTTVISGWCSSGSMDDAMRVFNKMCKFG 423

Query: 645 VQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
           V P+  T   +  GY+       A E LQ++
Sbjct: 424 VSPNIKTFETLMWGYLEVKQPWKAEEVLQMM 454



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 35/187 (18%), Positives = 82/187 (43%), Gaps = 38/187 (20%)

Query: 515 VLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDG 574
           +++ L+E    H A  +FK +   G  P+  +Y  ++   ++ + + S S++VS + + G
Sbjct: 45  LMNVLIERGRPHEAQTVFKTLAETGHRPSLISYTTLLAAMTVQKQYGSLSSIVSEVEQSG 104

Query: 575 FYPQTMTYTALIKILLDYGDFDEALN---------------------------------- 600
             P ++ + A+I    + G+ ++A+                                   
Sbjct: 105 TKPDSIFFNAVINAFSESGNMEDAVQALLKMKELGLNPTTSTYNTLIKGYGIAGKPERSS 164

Query: 601 -LLDLVSLEG---IPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVF 656
            LLDL+  E    +  ++  +N +++  C+K +++    ++ +M +  V+PD  T + + 
Sbjct: 165 ALLDLMLEESNVDVRPNIRTFNVLVQAWCKKKKVEEAWEVVHKMEECGVRPDTVTYNTIA 224

Query: 657 SGYVNCG 663
           + YV  G
Sbjct: 225 TCYVQKG 231


>gi|125582553|gb|EAZ23484.1| hypothetical protein OsJ_07180 [Oryza sativa Japonica Group]
          Length = 457

 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 89/389 (22%), Positives = 148/389 (38%), Gaps = 82/389 (21%)

Query: 299 VIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNN 358
           V   CG  Q    A +L+ +M    ++P ++TY+  IR +       N + VL  M +  
Sbjct: 7   VAGYCGAGQLDA-ARRLVAEMP---VEPDAYTYNTLIRGLCGRGRTANALAVLDEMLRRR 62

Query: 359 LKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIF 418
             P   T                                ++  L A       ++A+K+ 
Sbjct: 63  CVPDVVT--------------------------------YTILLEATCKRSGYKQAMKLL 90

Query: 419 AKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSH 477
            +MR K   PDI TY ++      VN   +EG    +VD     +AIE            
Sbjct: 91  DEMRDKGCTPDIVTYNVV------VNGICQEG----RVD-----DAIEF----------- 124

Query: 478 ISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKT 537
                          ++ L  Y C+  T     +YN VL  L  A+    A E+  +M  
Sbjct: 125 ---------------LKNLPSYGCEPNTV----SYNIVLKGLCTAERWEDAEELMGEMGQ 165

Query: 538 CGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDE 597
            G PPN  T+N++I         + A  ++  + + G  P +++Y  L+         D+
Sbjct: 166 KGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDK 225

Query: 598 ALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFS 657
           A+  LDL+   G   D++ YNT+L   C  G +DV   ++ Q+      P   + + V  
Sbjct: 226 AMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVID 285

Query: 658 GYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           G    G    A+E L  +  + L  ++ T
Sbjct: 286 GLTKAGKTKEALELLNEMVSKGLQPDIIT 314



 Score = 72.4 bits (176), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 88/383 (22%), Positives = 153/383 (39%), Gaps = 25/383 (6%)

Query: 304 GRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQD 363
           GRT N+      ML+ + +   P   TY   + A     G +  M++L  M+     P  
Sbjct: 46  GRTANALAVLDEMLRRRCV---PDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDI 102

Query: 364 STI-ATLSVECSKALELDLAEALLDQISRCTNPK--PFSAFLAACDTMDKPERAIKIFAK 420
            T    ++  C +    D  E L +  S    P    ++  L    T ++ E A ++  +
Sbjct: 103 VTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGE 162

Query: 421 MRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHIS 479
           M QK   P++ T+ +L S             +  Q+    +       ++ N + H+   
Sbjct: 163 MGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQI---PKYGCTPNSLSYNPLLHAFCK 219

Query: 480 MKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCG 539
            K + KA+     +  ++   C         +YNT+L +L  + E   A+E+  Q+K  G
Sbjct: 220 QKKMDKAMA---FLDLMVSRGCYPDIV----SYNTLLTALCRSGEVDVAVELLHQLKDKG 272

Query: 540 IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEAL 599
             P   +YN +ID  +     K A  L++ MV  G  P  +TY+ +   L      ++A+
Sbjct: 273 CAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAI 332

Query: 600 NLLDLVSLEGIPHDVLLYNTILKKACEK----GRIDVIEFIIEQMHQNKVQPDPSTCHFV 655
                V   GI  + +LYN I+   C++      ID+  ++I     N   P+ ST   +
Sbjct: 333 RAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMI----GNGCMPNESTYTIL 388

Query: 656 FSGYVNCGFHNSAMEALQVLSMR 678
             G    G    A + L  L  R
Sbjct: 389 IEGLAYEGLIKEARDLLDELCSR 411



 Score = 49.3 bits (116), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 58/259 (22%), Positives = 97/259 (37%), Gaps = 35/259 (13%)

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
           M +K    N   + +++  LC+ G +E A  ++  +  +YG  P    YN  L A  K  
Sbjct: 163 MGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQI-PKYGCTPNSLSYNPLLHAFCKQK 221

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYSLSIFSLR 231
            M  A   LDLM SR    + V+Y  LL        +    E+      K  +  + S  
Sbjct: 222 KMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYN 281

Query: 232 KFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRT-SEGRLRSSRLDIPIPLNALPVMK 290
             +   T+    K A E L  MV+  +   +    T + G  R  R++            
Sbjct: 282 TVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIE------------ 329

Query: 291 VLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEV 350
                  D I A G+ Q+             +G++P++  Y+  I  +   R   + +++
Sbjct: 330 -------DAIRAFGKVQD-------------MGIRPNTVLYNAIILGLCKRRETHSAIDL 369

Query: 351 LKIMQQNNLKPQDSTIATL 369
              M  N   P +ST   L
Sbjct: 370 FAYMIGNGCMPNESTYTIL 388


>gi|144923530|gb|ABE80159.2| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 695

 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 104/528 (19%), Positives = 215/528 (40%), Gaps = 43/528 (8%)

Query: 154 IYPILP--VYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSA 211
           ++P  P  V++  LGA  ++     A      + S+ +  +  T+T L+     Q + + 
Sbjct: 49  VFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSIATFTILINCYFHQSHTAF 108

Query: 212 VHEIWEDYIKH-YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMM------GKLYI 264
              +    +K  Y  ++ +    +  F     +  A +  Q+++A   +      G L  
Sbjct: 109 AFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQFTYGTLIN 168

Query: 265 NRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHAC---GRTQNSGLAEQLML--QM 319
             +  G+++++       L+ L  M+      + V+++    G  ++  +++ L L  Q+
Sbjct: 169 GLSKNGQIKAA-------LHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQI 221

Query: 320 QSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALEL 379
              G+   + TY+  I    S    +   ++L  M + N+ P D T   L     K   +
Sbjct: 222 GERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRI 281

Query: 380 DLAEALLDQISRCTNPKP----FSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYEL 434
             A+ +L  +S+    KP    ++A +    + +    A ++F +M ++ L PD+  Y +
Sbjct: 282 LEAQGVLAMMSK-RGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNV 340

Query: 435 LFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMI- 493
           L   +       E   +F +             +   N+  +  S  +L+  L   G I 
Sbjct: 341 LIDGYCKTKMVDEAMVLFKE-------------LCNKNLVPTIASYNSLIDGLCNSGRIS 387

Query: 494 --RELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI 551
             ++L+     S  P    TYN ++ +L +      A+ +   M   G+ PN  TYN M+
Sbjct: 388 HVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMM 447

Query: 552 DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIP 611
           D   +      A  + + MV+ G  P  + Y  LI         DEA+ L   +  + + 
Sbjct: 448 DGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLI 507

Query: 612 HDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
            D+  YN+++   C  GRI  ++ ++++M  +   PD  T + +   +
Sbjct: 508 PDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAF 555



 Score = 80.5 bits (197), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 113/538 (21%), Positives = 201/538 (37%), Gaps = 58/538 (10%)

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
           ME+  +  N   Y  ++  LCK G++ +A  L   +GER GI      YNS +  C  + 
Sbjct: 186 MEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGER-GILLDAVTYNSLIDGCCSVG 244

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH-YSLSIFSLR 231
                   L  M    V  ++ T+  L+     +  +     +     K      I +  
Sbjct: 245 RWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYN 304

Query: 232 KFVWSFTRLRDLKSAYETLQHMVALAMMGK-LYINRTSEGRLRSSRLDIPIPL------- 283
             +  +    ++  A E    MV   +    L  N   +G  ++  +D  + L       
Sbjct: 305 ALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNK 364

Query: 284 NALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRG 343
           N +P +     S++ +I     +      ++L+ +M      P   TY+  I A+  +  
Sbjct: 365 NLVPTIA----SYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGR 420

Query: 344 LRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLA 403
           +   + VL +M +  +KP   T                                ++A + 
Sbjct: 421 ILEALGVLVMMMKKGVKPNIVT--------------------------------YNAMMD 448

Query: 404 ACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRIN 462
                +    A  IF +M +  L PDI  Y +L + +       E   +F ++     I 
Sbjct: 449 GYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIP 508

Query: 463 AIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEA 522
            I           S+ S+ + L  LG    ++EL+   CDS       TYN +L +  + 
Sbjct: 509 DIA----------SYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKT 558

Query: 523 QESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTY 582
           Q   +A+ +F+Q+   GI P+  T + ++D        K A   +  ++  G  P   TY
Sbjct: 559 QPFDKAISLFRQIVE-GIWPDFYTNHAIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTY 617

Query: 583 TALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQM 640
           T LI  L   G F EA+ LL  +     P D + +  I+    ++   D  E + E+M
Sbjct: 618 TILINALCKDGSFGEAMLLLSKMEDNDRPPDAITFEIIIGVLLQRNETDKAEKLREEM 675



 Score = 77.0 bits (188), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 77/380 (20%), Positives = 161/380 (42%), Gaps = 24/380 (6%)

Query: 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
           ++++  +I+   +      A  L+ +M+   +QP+   Y   I  +  D  + + + +  
Sbjct: 160 QFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCS 219

Query: 353 IMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR-CTNPKPFSAFLAACDTMDKP 411
            + +  +     T  +L   C           LL ++ R   +P  ++ F    D + K 
Sbjct: 220 QIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYT-FNILIDALCKE 278

Query: 412 ERAIK---IFAKMRQKL-RPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMD 467
            R ++   + A M ++  +PDI TY  L   + +    +E   +F+++   KR   +E D
Sbjct: 279 GRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRM--VKR--GLEPD 334

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQE 524
           +   N+         L+       M+ E   L +  C+        +YN+++  L  +  
Sbjct: 335 VLNYNV---------LIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGR 385

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDC-CSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
                ++  +M     PP+  TYNI+ID  C   R  ++   LV MM++ G  P  +TY 
Sbjct: 386 ISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLV-MMMKKGVKPNIVTYN 444

Query: 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
           A++       + + A ++ + +   G+  D+L YN ++   C+   +D    + ++M   
Sbjct: 445 AMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHK 504

Query: 644 KVQPDPSTCHFVFSGYVNCG 663
            + PD ++ + +  G  N G
Sbjct: 505 NLIPDIASYNSLIDGLCNLG 524



 Score = 77.0 bits (188), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 78/338 (23%), Positives = 145/338 (42%), Gaps = 31/338 (9%)

Query: 379 LDLAEALLDQISRCTNPKPFSAF---LAACDTMDKPERAIKIFAKMRQK-LRPDIRTYEL 434
           +D A    +++ R   P P S F   L A   M     AI +F +++ K + P I T+ +
Sbjct: 36  VDDAVTCFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSIATFTI 95

Query: 435 L-------------FSLFGNVNAPYEEGNM--FSQVDSAKRINAI---EMDMARNNIQHS 476
           L             FSL   +     + N+  F+ + +   IN +    +D  +N +   
Sbjct: 96  LINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQG 155

Query: 477 HI----SMKNLLKALGAEGMIR---ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAM 529
           ++    +   L+  L   G I+    L+Q    S        Y+ ++  L +      A+
Sbjct: 156 YLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDAL 215

Query: 530 EIFKQMKTCGIPPNAATYNIMID-CCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
            +  Q+   GI  +A TYN +ID CCS+ R ++  + L++ MVR+   P   T+  LI  
Sbjct: 216 GLCSQIGERGILLDAVTYNSLIDGCCSVGR-WQEVTQLLTKMVRENVDPDDYTFNILIDA 274

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
           L   G   EA  +L ++S  G   D++ YN +++  C +  +     +  +M +  ++PD
Sbjct: 275 LCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPD 334

Query: 649 PSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
               + +  GY      + AM   + L  + L   +++
Sbjct: 335 VLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIAS 372


>gi|145355437|ref|XP_001421968.1| pentatrichopeptide repeat (PPR) protein [Ostreococcus lucimarinus
           CCE9901]
 gi|144582207|gb|ABP00262.1| pentatrichopeptide repeat (PPR) protein [Ostreococcus lucimarinus
           CCE9901]
          Length = 377

 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 89/381 (23%), Positives = 161/381 (42%), Gaps = 61/381 (16%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI-MQQNNLKPQDSTIAT-- 368
           AE+++ +M + G++     ++  I     ++ LR G+E   + M+   + P  +T     
Sbjct: 13  AERVLREMTAEGVRAGPRLFNTLITGYGREKNLR-GVEASSMAMRTLGVTPNQATWGAKV 71

Query: 369 -LSVECSKALELDLAEALLDQ-------ISRCTNPKPFSAFLAACDTMDKPERAIKIFAK 420
              V C +   LDLA   L+Q       + R    + ++A +       +   A ++  +
Sbjct: 72  NAYVSCDR---LDLAMDTLEQGVRFSPRVERRPGVQAYTALVQGLAHSGRVVEADELLRR 128

Query: 421 M-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHIS 479
           M R  ++P++ TY  L                 +Q+  A+   A   +M R  I+ S ++
Sbjct: 129 MARDGVKPNVYTYSTLIDGLAK----------SAQIGLAETALA---EMRRAKIKPSVVT 175

Query: 480 MKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCG 539
             +LLK     G++R + +              + VL          RA E+F +M+  G
Sbjct: 176 YNSLLK-----GVVRGIGK----------ADRTDEVLR---------RAREMFDRMRDDG 211

Query: 540 IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEAL 599
           +PP+  TYN +ID C   R    A  ++  +   G  P  +TYT L+K  +  GD D A 
Sbjct: 212 VPPDLVTYNTLIDACINARAPAEAWNILREISESGLKPDVVTYTTLLKYFVQVGD-DSAT 270

Query: 600 NLLDLVSLEGIPH---DVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVF 656
             + +  LE  P    DV +YN ++     +G +      +E M    + P+ ST   + 
Sbjct: 271 QWV-IAELETDPQVVEDVGVYNCLINAYARQGDMCRAVETLEGMKAKNITPNVSTYGSIL 329

Query: 657 SGYVNCGFHNSAMEALQVLSM 677
            GY+  G   +  EA +V ++
Sbjct: 330 EGYIRLG---NVGEAFKVYNL 347


>gi|224113413|ref|XP_002316488.1| predicted protein [Populus trichocarpa]
 gi|222865528|gb|EEF02659.1| predicted protein [Populus trichocarpa]
          Length = 941

 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 89/187 (47%), Gaps = 4/187 (2%)

Query: 489 AEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYN 548
           AE ++RE+ +   D+  PL    Y+T++      +   + + +FK++K CG  P+  TY 
Sbjct: 418 AEALVREMEEEGIDA--PLDI--YHTMMDGYTMIRNEEKCLIVFKRLKECGFAPSVITYG 473

Query: 549 IMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLE 608
            +I+  + I     A  +  MM   G      TY+ LI   L   D+  A  + + V  +
Sbjct: 474 CLINMYTKIGKVSKALEVSKMMKSVGIKHNMKTYSMLINGFLKLKDWTNAFAVFEDVIKD 533

Query: 609 GIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSA 668
           G+  DV+LYN I+K  C  G +D    ++++M + + +P   T   +  G+   G    A
Sbjct: 534 GLKPDVVLYNNIIKAFCGMGNMDRAIHMVKEMQKERCRPTSRTFMPIIHGFARAGEMRRA 593

Query: 669 MEALQVL 675
           +E   ++
Sbjct: 594 LEIFDMM 600



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 78/368 (21%), Positives = 145/368 (39%), Gaps = 16/368 (4%)

Query: 318 QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKAL 377
           +++  G  PS  TY   I        +   +EV K+M+   +K    T + L     K  
Sbjct: 459 RLKECGFAPSVITYGCLINMYTKIGKVSKALEVSKMMKSVGIKHNMKTYSMLINGFLKLK 518

Query: 378 ELDLAEALLDQISRCTNPKP----FSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTY 432
           +   A A+ + + +    KP    ++  + A   M   +RAI +  +M +++ RP  RT+
Sbjct: 519 DWTNAFAVFEDVIK-DGLKPDVVLYNNIIKAFCGMGNMDRAIHMVKEMQKERCRPTSRTF 577

Query: 433 ELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGM 492
             +   F           +F   D  +R   I      N +    +  + + KA+     
Sbjct: 578 MPIIHGFARAGEMRRALEIF---DMMRRSGCIPTVHTFNALVLGLVEKRKMEKAV----- 629

Query: 493 IRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID 552
             E++     +       TY T++H      ++ +A E F +M+  G+  +  TY  ++ 
Sbjct: 630 --EILDEMALAGVSPDEHTYTTIMHGYAALGDTGKAFEYFTKMRNEGLQLDVFTYEALLK 687

Query: 553 CCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPH 612
            C      +SA A+   M        T  Y  LI      GD  EA +L+  ++ EG+  
Sbjct: 688 ACCKSGRMQSALAVTREMNAQKIPRNTFVYNILIDGWARRGDIWEAADLMQQMNQEGVQP 747

Query: 613 DVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEAL 672
           D+  Y + +   C+ G +      +E+M    V+P+  T   +  G+ N      A+   
Sbjct: 748 DIHTYTSFINACCKAGDMLRATKTMEEMEAAGVKPNVKTYTTLIHGWANASLPEKALSCF 807

Query: 673 QVLSMRML 680
           + L +  L
Sbjct: 808 EELKLAGL 815



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 116/582 (19%), Positives = 217/582 (37%), Gaps = 100/582 (17%)

Query: 89  DFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFL 148
           +F  ++ Y AR  D     +T+  M  + I  ++  Y  ++ A   G  +EEA + +  +
Sbjct: 296 EFGLMVGYYARRGDMHRARQTFESMRARGIDPSSHVYTSLIHAYAVGRDMEEALSCVRKM 355

Query: 149 GERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTY------------ 196
            E  GI   L  Y+  +G  AK  +   A+        R    N   Y            
Sbjct: 356 NEE-GIEMSLVTYSIVVGGFAKFGNAEAADCWFKKAKERHTNLNAYIYGNIIYAYCQACN 414

Query: 197 ---TELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHM 253
               E L   + ++ + A  +I+   +  Y++ I +  K +  F RL++   A   + + 
Sbjct: 415 MDRAEALVREMEEEGIDAPLDIYHTMMDGYTM-IRNEEKCLIVFKRLKECGFAPSVITYG 473

Query: 254 VALAMMGKLYINRTSEGRLRSSRL--DIPIPLNALP-------VMKVLRWS-----FSDV 299
             + M  K  I + S+  L  S++   + I  N           +K+  W+     F DV
Sbjct: 474 CLINMYTK--IGKVSKA-LEVSKMMKSVGIKHNMKTYSMLINGFLKLKDWTNAFAVFEDV 530

Query: 300 IHA----------------CGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRG 343
           I                  CG   N   A  ++ +MQ    +P+S T+   I        
Sbjct: 531 IKDGLKPDVVLYNNIIKAFCG-MGNMDRAIHMVKEMQKERCRPTSRTFMPIIHGFARAGE 589

Query: 344 LRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRC---TNPKPFSA 400
           +R  +E+  +M+++   P   T   L +   +  +++ A  +LD+++      +   ++ 
Sbjct: 590 MRRALEIFDMMRRSGCIPTVHTFNALVLGLVEKRKMEKAVEILDEMALAGVSPDEHTYTT 649

Query: 401 FLAACDTMDKPERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAK 459
            +     +    +A + F KMR + L+ D+ TYE L      + A  + G M S +   +
Sbjct: 650 IMHGYAALGDTGKAFEYFTKMRNEGLQLDVFTYEAL------LKACCKSGRMQSALAVTR 703

Query: 460 RINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSL 519
            +NA                                        K P  T  YN ++   
Sbjct: 704 EMNA---------------------------------------QKIPRNTFVYNILIDGW 724

Query: 520 VEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQT 579
               +   A ++ +QM   G+ P+  TY   I+ C        A+  +  M   G  P  
Sbjct: 725 ARRGDIWEAADLMQQMNQEGVQPDIHTYTSFINACCKAGDMLRATKTMEEMEAAGVKPNV 784

Query: 580 MTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTIL 621
            TYT LI    +    ++AL+  + + L G+  D  +Y+ ++
Sbjct: 785 KTYTTLIHGWANASLPEKALSCFEELKLAGLKPDKAVYHCLM 826



 Score = 47.4 bits (111), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 78/175 (44%), Gaps = 4/175 (2%)

Query: 26  ERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSL 85
           E+R +   +E+   +    G++ +  +  T M    AL  G+  +A      + +    L
Sbjct: 621 EKRKMEKAVEILDEMALA-GVSPDEHTYTTIMHGYAAL--GDTGKAFEYFTKMRNEGLQL 677

Query: 86  GADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLI 145
               +  +L  C +S      +   R M  ++I  N   Y +++    + G + EA++L+
Sbjct: 678 DVFTYEALLKACCKSGRMQSALAVTREMNAQKIPRNTFVYNILIDGWARRGDIWEAADLM 737

Query: 146 YFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELL 200
             + +  G+ P +  Y SF+ AC K   M+ A   ++ M++  V  N  TYT L+
Sbjct: 738 QQMNQE-GVQPDIHTYTSFINACCKAGDMLRATKTMEEMEAAGVKPNVKTYTTLI 791


>gi|218196744|gb|EEC79171.1| hypothetical protein OsI_19856 [Oryza sativa Indica Group]
          Length = 633

 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/250 (25%), Positives = 115/250 (46%), Gaps = 13/250 (5%)

Query: 412 ERAIKIFAKMRQKLR--PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
           +RA+ +  +MR  LR  PD   +  + +   + + P   G   + +D A   + +  D A
Sbjct: 163 DRALHLLDEMRALLRRRPDAACFTTVAAALSSASRP---GAALAVLD-AMAADGVAPDAA 218

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAM 529
              +     + +  L+   A     E++++   +       TY+T++  L  A +   A+
Sbjct: 219 ACTVLVGVYACR--LRRFDAA---YEVVRWMVANGVAPDVVTYSTLISGLCSAGQVAEAL 273

Query: 530 EIFKQMKTCGIPPNAATYNIMIDC-CSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
            +   M   G  PNA TY  ++   C+  R    A  L++ M+  GF P T TY  L++ 
Sbjct: 274 GVLDLMLEEGCQPNAHTYTPIVHAYCTGGR-IHEAKRLLNTMIASGFAPSTATYNVLVEA 332

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
           L   G F+E   LL+  + +G   DV+ Y++ +   C+ GRID    ++++M  N +QP 
Sbjct: 333 LCKVGAFEEVDALLEESTAKGWTPDVITYSSYMDGLCKAGRIDKSFALVDKMLSNGLQPS 392

Query: 649 PSTCHFVFSG 658
             T + +  G
Sbjct: 393 EVTLNILLDG 402



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 69/153 (45%), Gaps = 1/153 (0%)

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSI-IRCFKSASALVSMM 570
           + TV  +L  A     A+ +   M   G+ P+AA   +++   +  +R F +A  +V  M
Sbjct: 185 FTTVAAALSSASRPGAALAVLDAMAADGVAPDAAACTVLVGVYACRLRRFDAAYEVVRWM 244

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           V +G  P  +TY+ LI  L   G   EAL +LDL+  EG   +   Y  I+   C  GRI
Sbjct: 245 VANGVAPDVVTYSTLISGLCSAGQVAEALGVLDLMLEEGCQPNAHTYTPIVHAYCTGGRI 304

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
              + ++  M  +   P  +T + +       G
Sbjct: 305 HEAKRLLNTMIASGFAPSTATYNVLVEALCKVG 337



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 52/259 (20%), Positives = 99/259 (38%), Gaps = 28/259 (10%)

Query: 380 DLAEALLDQISRCTNPKP----FSAFLAACDTMDKPERAIKIFAKMR-QKLRPDIRTYEL 434
           D A  LLD++      +P    F+   AA  +  +P  A+ +   M    + PD     +
Sbjct: 163 DRALHLLDEMRALLRRRPDAACFTTVAAALSSASRPGAALAVLDAMAADGVAPDAAACTV 222

Query: 435 LFSLFG----NVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAE 490
           L  ++       +A YE                +   M  N +    ++   L+  L + 
Sbjct: 223 LVGVYACRLRRFDAAYE----------------VVRWMVANGVAPDVVTYSTLISGLCSA 266

Query: 491 GMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATY 547
           G + E   ++    +        TY  ++H+       H A  +   M   G  P+ ATY
Sbjct: 267 GQVAEALGVLDLMLEEGCQPNAHTYTPIVHAYCTGGRIHEAKRLLNTMIASGFAPSTATY 326

Query: 548 NIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSL 607
           N++++    +  F+   AL+      G+ P  +TY++ +  L   G  D++  L+D +  
Sbjct: 327 NVLVEALCKVGAFEEVDALLEESTAKGWTPDVITYSSYMDGLCKAGRIDKSFALVDKMLS 386

Query: 608 EGIPHDVLLYNTILKKACE 626
            G+    +  N +L   C 
Sbjct: 387 NGLQPSEVTLNILLDGVCR 405



 Score = 62.4 bits (150), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 75/352 (21%), Positives = 140/352 (39%), Gaps = 39/352 (11%)

Query: 323 GLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLA 382
           G QP++HTY   + A  +   +     +L  M  +   P  +T   L     K    +  
Sbjct: 283 GCQPNAHTYTPIVHAYCTGGRIHEAKRLLNTMIASGFAPSTATYNVLVEALCKVGAFEEV 342

Query: 383 EALLDQ-ISRCTNPK--PFSAFLAACDTMDKPERAIKIFA----KMRQKLRPDIRTYELL 435
           +ALL++  ++   P    +S+++   D + K  R  K FA     +   L+P   T  +L
Sbjct: 343 DALLEESTAKGWTPDVITYSSYM---DGLCKAGRIDKSFALVDKMLSNGLQPSEVTLNIL 399

Query: 436 FS--------------------LFGNVNAPYEEGNMFSQVDSAKRINAIEM--DMARNNI 473
                                 L  + N       M    D  + ++ +++  DMA+  I
Sbjct: 400 LDGVCRSSTAWAAKRLLECSAELGWDANVVNYNTVMRRLCDERRWLSVVKLFTDMAKKGI 459

Query: 474 QHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFK 533
             +  +   ++ +L   G + + +      +      TYNT++  L  + E +    +  
Sbjct: 460 APNSWTFNIVVHSLCKLGRLHKALCLLRSKEFVATVITYNTLIRHLSISGEGNEVCLLLY 519

Query: 534 QMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYG 593
           QM   GI PN  TY+++IDC      F  A       + D F+P    + ++I+ L+  G
Sbjct: 520 QMIEGGIAPNDITYSLVIDCLCREEKFLVALCCFYQSLEDDFFPS--AFLSIIRGLIVGG 577

Query: 594 DFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEF-----IIEQM 640
              +   L+  V  +G   +V +Y  ++K  C+ G    +E      I+E+M
Sbjct: 578 MLGQLHTLIGCVLGQGFIIEVYIYQELIKALCKNGYCQSVEMYKVCHILERM 629



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 78/364 (21%), Positives = 141/364 (38%), Gaps = 37/364 (10%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSD-RGLRNGMEVLKIM 354
           F+ V  A       G A  ++  M + G+ P +      +       R      EV++ M
Sbjct: 185 FTTVAAALSSASRPGAALAVLDAMAADGVAPDAAACTVLVGVYACRLRRFDAAYEVVRWM 244

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQI--SRC-TNPKPFSAFLAACDTMDKP 411
             N + P   T +TL      A ++  A  +LD +    C  N   ++  + A  T  + 
Sbjct: 245 VANGVAPDVVTYSTLISGLCSAGQVAEALGVLDLMLEEGCQPNAHTYTPIVHAYCTGGRI 304

Query: 412 ERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAK----------- 459
             A ++   M      P   TY +L      V A +EE +   +  +AK           
Sbjct: 305 HEAKRLLNTMIASGFAPSTATYNVLVEALCKVGA-FEEVDALLEESTAKGWTPDVITYSS 363

Query: 460 ---------RIN---AIEMDMARNNIQHSHISMKNLLKAL---GAEGMIRELIQYFCDSK 504
                    RI+   A+   M  N +Q S +++  LL  +         + L++   +  
Sbjct: 364 YMDGLCKAGRIDKSFALVDKMLSNGLQPSEVTLNILLDGVCRSSTAWAAKRLLECSAELG 423

Query: 505 TPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI-DCCSIIRCFKSA 563
                  YNTV+  L + +     +++F  M   GI PN+ T+NI++   C + R  K+ 
Sbjct: 424 WDANVVNYNTVMRRLCDERRWLSVVKLFTDMAKKGIAPNSWTFNIVVHSLCKLGRLHKA- 482

Query: 564 SALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKK 623
              + ++    F    +TY  LI+ L   G+ +E   LL  +   GI  + + Y+ ++  
Sbjct: 483 ---LCLLRSKEFVATVITYNTLIRHLSISGEGNEVCLLLYQMIEGGIAPNDITYSLVIDC 539

Query: 624 ACEK 627
            C +
Sbjct: 540 LCRE 543



 Score = 43.9 bits (102), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 33/157 (21%), Positives = 65/157 (41%), Gaps = 2/157 (1%)

Query: 521 EAQESHRAMEIFKQMKTC-GIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQT 579
           +   + RA+ +  +M+      P+AA +  +    S      +A A++  M  DG  P  
Sbjct: 158 DGAGADRALHLLDEMRALLRRRPDAACFTTVAAALSSASRPGAALAVLDAMAADGVAPDA 217

Query: 580 MTYTALIKIL-LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIE 638
              T L+ +       FD A  ++  +   G+  DV+ Y+T++   C  G++     +++
Sbjct: 218 AACTVLVGVYACRLRRFDAAYEVVRWMVANGVAPDVVTYSTLISGLCSAGQVAEALGVLD 277

Query: 639 QMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
            M +   QP+  T   +   Y   G  + A   L  +
Sbjct: 278 LMLEEGCQPNAHTYTPIVHAYCTGGRIHEAKRLLNTM 314


>gi|115476328|ref|NP_001061760.1| Os08g0402600 [Oryza sativa Japonica Group]
 gi|113623729|dbj|BAF23674.1| Os08g0402600, partial [Oryza sativa Japonica Group]
          Length = 554

 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 88/402 (21%), Positives = 152/402 (37%), Gaps = 55/402 (13%)

Query: 270 GRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSH 329
           G LR    D   P NA        +S++ VI    R    G A ++  +M    + P+  
Sbjct: 48  GMLRRMGRDGAPPPNA--------FSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHI 99

Query: 330 TYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI 389
           TY+  I   +    L  G  +   M  + LKP   T   L     +A  +    ALLD++
Sbjct: 100 TYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEM 159

Query: 390 SRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEG 449
           +                                QK+ PD  TY +LF             
Sbjct: 160 AS-------------------------------QKMVPDGFTYSILF------------- 175

Query: 450 NMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMI---RELIQYFCDSKTP 506
           +  S+   +K + ++     +N +     +   LL  L  +G +    E++Q   ++   
Sbjct: 176 DGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLV 235

Query: 507 LGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASAL 566
                YNT+++   +  E   A   F QMK+  I P+  TYN +I+         +A  L
Sbjct: 236 PTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDL 295

Query: 567 VSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE 626
           +  M  +G  P   T+  LI      G  ++   +L  +   G+  +V+ Y +I+   C+
Sbjct: 296 LMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCK 355

Query: 627 KGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSA 668
            G+I     I++ M    V P+    + +   YV  G ++ A
Sbjct: 356 NGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQA 397



 Score = 76.6 bits (187), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 105/502 (20%), Positives = 193/502 (38%), Gaps = 45/502 (8%)

Query: 228 FSLRKFVWSFTRLRDLKSAYETLQHMVALAMM-GKLYINRTSEGRLRSSRLDIPIPLNAL 286
           FS    +    R      A E    M   A++   +  N   +G ++   L+    L   
Sbjct: 64  FSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQ 123

Query: 287 PVMKVLR---WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRG 343
            V   L+    +++ ++    R    G    L+ +M S  + P     DGF  +I+ D  
Sbjct: 124 MVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVP-----DGFTYSILFDGL 178

Query: 344 LRNG-----MEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT---NP 395
            RNG     + +     +N +   D T + L     K  ++ +AE +L  +         
Sbjct: 179 SRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTR 238

Query: 396 KPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQ 454
             ++  +       + E A   F +M+ + ++PD  TY  L              N   +
Sbjct: 239 VIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALI-------------NGLCK 285

Query: 455 VDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---T 511
            +       + M+M  N +  +  +   L+ A G  G + +      + +     P   +
Sbjct: 286 AERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVS 345

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           Y +++++  +  +   A+ I   M    + PNA  YN +ID          A  LV  M 
Sbjct: 346 YGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMK 405

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
            +G  P  +TY  LIK L +     EA  +++ +S   +  D + YNT++   C +G ID
Sbjct: 406 SNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNID 465

Query: 632 VIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEV------- 684
               + ++MH+  ++    T H + SG    G  N     ++ L  +M+   V       
Sbjct: 466 KALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNE----MEYLYQKMMQNNVVPSNAIH 521

Query: 685 STLEEKRSDFEDLILAEDSEAE 706
           + + E  S + + I AED   E
Sbjct: 522 NIMVEAYSKYGNEIKAEDLRKE 543



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 95/464 (20%), Positives = 190/464 (40%), Gaps = 32/464 (6%)

Query: 107 METWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGER---YGIYPILPVYNS 163
           +E +  M E+ +  N+  Y  M+    KGG LE      + L ++   +G+ P    YN 
Sbjct: 83  VEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAG----FRLRDQMVCHGLKPNAITYNV 138

Query: 164 FLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH- 222
            L    +   M   +  LD M S+ +  +  TY+ L        +  A+  ++  Y+K+ 
Sbjct: 139 LLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNG 198

Query: 223 YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMM-GKLYINRTSEGRLRSSRLDIPI 281
            ++  ++    +    +   +  A E LQ +V   ++  ++  N    G  ++  L+   
Sbjct: 199 VTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAF 258

Query: 282 PLNALPVMKVLR---WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAI 338
                   + ++    +++ +I+   + +    A+ L+++MQ  G+ P+  T++  I A 
Sbjct: 259 STFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAY 318

Query: 339 VSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI---SRCTNP 395
                L     VL  MQ+N LKP   +  ++     K  ++  A A+LD +       N 
Sbjct: 319 GRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNA 378

Query: 396 KPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQ 454
           + ++A + A       ++A  +  KM+   + P I TY LL     N           SQ
Sbjct: 379 QVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQ----------SQ 428

Query: 455 VDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIR---ELIQYFCDSKTPLGTPT 511
           +  A+    I   ++ + +    +S   L+ A    G I    +L Q            T
Sbjct: 429 ISEAEE---IINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRT 485

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCS 555
           Y+ ++  L  A   +    ++++M    + P+ A +NIM++  S
Sbjct: 486 YHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYS 529



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 103/551 (18%), Positives = 204/551 (37%), Gaps = 68/551 (12%)

Query: 129 MQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRM 188
           +QA    G L EA  ++  +G      P    YN  +    +      A    D M  R 
Sbjct: 34  VQACVAAGDLGEAVGMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERA 93

Query: 189 VGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH-YSLSIFSLRKFVWSFTRLRDLKSAY 247
           V  N +TY  ++   +   +L A   + +  + H    +  +    +    R   +    
Sbjct: 94  VLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETS 153

Query: 248 ETLQHMVALAMM--GKLY------INRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDV 299
             L  M +  M+  G  Y      ++R  + +   S     +  N + +     ++ S +
Sbjct: 154 ALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLK-NGVTIGD---YTCSIL 209

Query: 300 IHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNL 359
           ++   +     +AE+++  + + GL P+   Y+  I        L         M+  ++
Sbjct: 210 LNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHI 269

Query: 360 KPQDSTIATLSVECSKALELDLAEALLDQI-SRCTNP--KPFSAFLAACDTMDKPERAIK 416
           KP   T   L     KA  +  A+ LL ++     NP  + F+  + A     + E+   
Sbjct: 270 KPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFI 329

Query: 417 IFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQH 475
           + ++M++  L+P++ +Y  +      VNA  + G +   V       AI  DM   ++  
Sbjct: 330 VLSEMQENGLKPNVVSYGSI------VNAFCKNGKIPEAV-------AILDDMFHKDVLP 376

Query: 476 SHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIF 532
           +      ++ A    G   +   L++    +       TYN ++  L    +   A EI 
Sbjct: 377 NAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEII 436

Query: 533 KQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDY 592
             +    + P+A +YN +I  C    C++                               
Sbjct: 437 NSLSNHRLIPDAVSYNTLISAC----CYR------------------------------- 461

Query: 593 GDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTC 652
           G+ D+AL+L   +   GI   V  Y+ ++      GR++ +E++ ++M QN V P  +  
Sbjct: 462 GNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIH 521

Query: 653 HFVFSGYVNCG 663
           + +   Y   G
Sbjct: 522 NIMVEAYSKYG 532



 Score = 38.9 bits (89), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 64/338 (18%), Positives = 136/338 (40%), Gaps = 23/338 (6%)

Query: 59  IVDALCRGERSRASHLLLNLGHAHHSLGADDFFH--ILNYCARSPDPLFVMETWRMMEEK 116
           ++  LCR  R   +  LL+   A   +  D F +  + +  +R+ D   ++  +    + 
Sbjct: 139 LLSGLCRAGRMGETSALLDE-MASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKN 197

Query: 117 EIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVH 176
            + + +    +++  LCK G +  A  ++  L    G+ P   +YN+ +    +   +  
Sbjct: 198 GVTIGDYTCSILLNGLCKDGKVSIAEEVLQSL-VNAGLVPTRVIYNTLINGYCQTGELEG 256

Query: 177 ANLCLDLMDSRMVGKNEVTYTELLK-LAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVW 235
           A      M SR +  + +TY  L+  L   ++  +A   + E      + ++ +    + 
Sbjct: 257 AFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLID 316

Query: 236 SFTRLRDLKSAYETLQHMVALAM------MGKLYINRTSEGRLRSSR--LDIPIPLNALP 287
           ++ R   L+  +  L  M    +       G +       G++  +   LD     + LP
Sbjct: 317 AYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLP 376

Query: 288 VMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNG 347
             +V    ++ +I A      +  A  L+ +M+S G+ PS  TY+  I+ + +   +   
Sbjct: 377 NAQV----YNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEA 432

Query: 348 MEVLKIMQQNNLKPQDSTIATLSVEC------SKALEL 379
            E++  +  + L P   +  TL   C       KAL+L
Sbjct: 433 EEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDL 470


>gi|356519757|ref|XP_003528536.1| PREDICTED: protein Rf1, mitochondrial-like [Glycine max]
          Length = 871

 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 81/374 (21%), Positives = 152/374 (40%), Gaps = 24/374 (6%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +F+ ++HA  R  N   A +L   +Q +G+ P++  Y+  +      R +     + + M
Sbjct: 319 TFTTILHALCREGNVVEARKLFDGIQDMGIAPNAAIYNTLMDGYFKAREVAQASLLYEEM 378

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQI---SRCTNPKPFSAFLAACDTMDKP 411
           +   + P   T   L     K   ++ ++ LL  +       +   +   +++     + 
Sbjct: 379 RTTGVSPDCVTFNILVWGHYKYGRIEDSDRLLKDLIVSGLFLDSSLYDVMVSSLCWAGRL 438

Query: 412 ERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471
           + A+K+  ++ +K         L    F ++   Y    +  +   A RI      M R 
Sbjct: 439 DEAMKLLQELLEK------GLTLSVVAFNSLIGAYSRAGLEDKAFEAYRI------MVRC 486

Query: 472 NIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRA 528
               S  +  +LL  L  +G ++E   L+    +   P+    Y  +L    +      A
Sbjct: 487 GFTPSSSTCNSLLMGLCRKGWLQEARILLYRMLEKGFPINKVAYTVLLDGYFKMNNLEGA 546

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
             ++K+MK  GI P+A  +  +ID  S     + A  +   M   GF P    Y +LI+ 
Sbjct: 547 QFLWKEMKERGIYPDAVAFTALIDGLSKAGNVEEAYEVFLEMSAIGFVPNNFAYNSLIRG 606

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIE---QMHQNKV 645
           L D G   EAL L   +  +G+  D   +N I+   C +G+   ++F IE    M +  +
Sbjct: 607 LCDCGRVTEALKLEKEMRQKGLLSDTFTFNIIIDGFCRRGQ---MKFAIETFLDMQRIGL 663

Query: 646 QPDPSTCHFVFSGY 659
            PD  T + +  GY
Sbjct: 664 LPDIFTFNILIGGY 677



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 77/165 (46%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           T+ T+LH+L        A ++F  ++  GI PNAA YN ++D     R    AS L   M
Sbjct: 319 TFTTILHALCREGNVVEARKLFDGIQDMGIAPNAAIYNTLMDGYFKAREVAQASLLYEEM 378

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
              G  P  +T+  L+     YG  +++  LL  + + G+  D  LY+ ++   C  GR+
Sbjct: 379 RTTGVSPDCVTFNILVWGHYKYGRIEDSDRLLKDLIVSGLFLDSSLYDVMVSSLCWAGRL 438

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
           D    +++++ +  +       + +   Y   G  + A EA +++
Sbjct: 439 DEAMKLLQELLEKGLTLSVVAFNSLIGAYSRAGLEDKAFEAYRIM 483



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 81/388 (20%), Positives = 161/388 (41%), Gaps = 26/388 (6%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +F+ +I+AC     + +A   +  M   G++PS  T+   + A+  +  +    ++   +
Sbjct: 284 TFNILINACCIGGRTWVAIDWLHLMVRSGVEPSVATFTTILHALCREGNVVEARKLFDGI 343

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERA 414
           Q   + P  +   TL     KA E+  A  L +++ R T   P       C T +     
Sbjct: 344 QDMGIAPNAAIYNTLMDGYFKAREVAQASLLYEEM-RTTGVSP------DCVTFNILVWG 396

Query: 415 IKIFAKMRQ--KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRIN-AIEM--DMA 469
              + ++    +L  D+    L        ++ Y+   M S +  A R++ A+++  ++ 
Sbjct: 397 HYKYGRIEDSDRLLKDLIVSGLFLD-----SSLYDV--MVSSLCWAGRLDEAMKLLQELL 449

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYF-----CDSKTPLGTPTYNTVLHSLVEAQE 524
              +  S ++  +L+ A    G+  +  + +     C   TP  + T N++L  L     
Sbjct: 450 EKGLTLSVVAFNSLIGAYSRAGLEDKAFEAYRIMVRC-GFTP-SSSTCNSLLMGLCRKGW 507

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
              A  +  +M   G P N   Y +++D    +   + A  L   M   G YP  + +TA
Sbjct: 508 LQEARILLYRMLEKGFPINKVAYTVLLDGYFKMNNLEGAQFLWKEMKERGIYPDAVAFTA 567

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
           LI  L   G+ +EA  +   +S  G   +   YN++++  C+ GR+     + ++M Q  
Sbjct: 568 LIDGLSKAGNVEEAYEVFLEMSAIGFVPNNFAYNSLIRGLCDCGRVTEALKLEKEMRQKG 627

Query: 645 VQPDPSTCHFVFSGYVNCGFHNSAMEAL 672
           +  D  T + +  G+   G    A+E  
Sbjct: 628 LLSDTFTFNIIIDGFCRRGQMKFAIETF 655



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 108/534 (20%), Positives = 205/534 (38%), Gaps = 67/534 (12%)

Query: 127 LMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDS 186
           +++ A C GG    A + ++ +  R G+ P +  + + L A  +  ++V A    D +  
Sbjct: 287 ILINACCIGGRTWVAIDWLHLM-VRSGVEPSVATFTTILHALCREGNVVEARKLFDGIQD 345

Query: 187 RMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDY-IKHYSLSIFSLRKFVWSFTRLRDLKS 245
             +  N   Y  L+      + ++    ++E+      S    +    VW   +   ++ 
Sbjct: 346 MGIAPNAAIYNTLMDGYFKAREVAQASLLYEEMRTTGVSPDCVTFNILVWGHYKYGRIED 405

Query: 246 AYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGR 305
           +   L+ ++   +             L SS  D+        ++  L W+        GR
Sbjct: 406 SDRLLKDLIVSGLF------------LDSSLYDV--------MVSSLCWA--------GR 437

Query: 306 TQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRN-GMEVLKIMQQNNLKPQDS 364
                 A +L+ ++   GL  S   ++  I A  S  GL +   E  +IM +    P  S
Sbjct: 438 LDE---AMKLLQELLEKGLTLSVVAFNSLIGA-YSRAGLEDKAFEAYRIMVRCGFTPSSS 493

Query: 365 TIATLSVECSKALELDLAEALLDQI---SRCTNPKPFSAFLAACDTMDKPERAIKIFAKM 421
           T  +L +   +   L  A  LL ++       N   ++  L     M+  E A  ++ +M
Sbjct: 494 TCNSLLMGLCRKGWLQEARILLYRMLEKGFPINKVAYTVLLDGYFKMNNLEGAQFLWKEM 553

Query: 422 RQK-LRPDIRTYELL---FSLFGNVNAPYEEGNMFSQV-----------------DSAKR 460
           +++ + PD   +  L    S  GNV   YE     S +                 D  + 
Sbjct: 554 KERGIYPDAVAFTALIDGLSKAGNVEEAYEVFLEMSAIGFVPNNFAYNSLIRGLCDCGRV 613

Query: 461 INAI--EMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTV 515
             A+  E +M +  +     +   ++      G ++  I+ F D +     P   T+N +
Sbjct: 614 TEALKLEKEMRQKGLLSDTFTFNIIIDGFCRRGQMKFAIETFLDMQRIGLLPDIFTFNIL 673

Query: 516 LHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGF 575
           +    +A +   A EI  +M +CG+ P+  TYN  +     +R    A  ++  ++  G 
Sbjct: 674 IGGYCKAFDMVGAGEIVNKMYSCGLDPDITTYNTYMHGYCRMRKMNQAVIILDQLISAGI 733

Query: 576 YPQTMTY-TALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
            P T+TY T L  I  D    D A+ L   +   G   +V+  N +L   C++G
Sbjct: 734 VPDTVTYNTMLSGICSDI--LDRAMILTAKLLKMGFIPNVITTNMLLSHFCKQG 785



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 56/122 (45%)

Query: 542 PNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNL 601
           P+  T+NI+I+ C I      A   + +MVR G  P   T+T ++  L   G+  EA  L
Sbjct: 280 PDVVTFNILINACCIGGRTWVAIDWLHLMVRSGVEPSVATFTTILHALCREGNVVEARKL 339

Query: 602 LDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVN 661
            D +   GI  +  +YNT++    +   +     + E+M    V PD  T + +  G+  
Sbjct: 340 FDGIQDMGIAPNAAIYNTLMDGYFKAREVAQASLLYEEMRTTGVSPDCVTFNILVWGHYK 399

Query: 662 CG 663
            G
Sbjct: 400 YG 401



 Score = 55.8 bits (133), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 47/223 (21%), Positives = 92/223 (41%), Gaps = 3/223 (1%)

Query: 467 DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQ 523
           +M    I    ++   L+  L   G + E  + F +       P    YN+++  L +  
Sbjct: 552 EMKERGIYPDAVAFTALIDGLSKAGNVEEAYEVFLEMSAIGFVPNNFAYNSLIRGLCDCG 611

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
               A+++ K+M+  G+  +  T+NI+ID        K A      M R G  P   T+ 
Sbjct: 612 RVTEALKLEKEMRQKGLLSDTFTFNIIIDGFCRRGQMKFAIETFLDMQRIGLLPDIFTFN 671

Query: 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
            LI       D   A  +++ +   G+  D+  YNT +   C   +++    I++Q+   
Sbjct: 672 ILIGGYCKAFDMVGAGEIVNKMYSCGLDPDITTYNTYMHGYCRMRKMNQAVIILDQLISA 731

Query: 644 KVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
            + PD  T + + SG  +     + +   ++L M  +   ++T
Sbjct: 732 GIVPDTVTYNTMLSGICSDILDRAMILTAKLLKMGFIPNVITT 774



 Score = 48.5 bits (114), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 69/386 (17%), Positives = 150/386 (38%), Gaps = 26/386 (6%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +F+ +I    R     + E L+  M      P   T++  I A          ++ L +M
Sbjct: 249 TFNAMICGFCRQHRVVVGESLLHLMPKFMCSPDVVTFNILINACCIGGRTWVAIDWLHLM 308

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKP 411
            ++ ++P  +T  T+     +   +  A  L D I       N   ++  +       + 
Sbjct: 309 VRSGVEPSVATFTTILHALCREGNVVEARKLFDGIQDMGIAPNAAIYNTLMDGYFKAREV 368

Query: 412 ERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKR------INAI 464
            +A  ++ +MR   + PD  T+ +L      V   Y+ G    +++ + R      ++ +
Sbjct: 369 AQASLLYEEMRTTGVSPDCVTFNIL------VWGHYKYG----RIEDSDRLLKDLIVSGL 418

Query: 465 EMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQE 524
            +D +  ++  S +     L     E M  +L+Q   +    L    +N+++ +   A  
Sbjct: 419 FLDSSLYDVMVSSLCWAGRLD----EAM--KLLQELLEKGLTLSVVAFNSLIGAYSRAGL 472

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
             +A E ++ M  CG  P+++T N ++         + A  L+  M+  GF    + YT 
Sbjct: 473 EDKAFEAYRIMVRCGFTPSSSTCNSLLMGLCRKGWLQEARILLYRMLEKGFPINKVAYTV 532

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
           L+       + + A  L   +   GI  D + +  ++    + G ++    +  +M    
Sbjct: 533 LLDGYFKMNNLEGAQFLWKEMKERGIYPDAVAFTALIDGLSKAGNVEEAYEVFLEMSAIG 592

Query: 645 VQPDPSTCHFVFSGYVNCGFHNSAME 670
             P+    + +  G  +CG    A++
Sbjct: 593 FVPNNFAYNSLIRGLCDCGRVTEALK 618



 Score = 40.0 bits (92), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 67/159 (42%), Gaps = 13/159 (8%)

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKS--ASALVSMMVRDGFYPQTMTYTALIK 587
           ++FK M   G  P+  T+N MI  C   R  +     +L+ +M +    P  +T+  LI 
Sbjct: 233 KLFKDMIFKGPRPSNLTFNAMI--CGFCRQHRVVVGESLLHLMPKFMCSPDVVTFNILIN 290

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
                G    A++ L L+   G+   V  + TIL   C +G +     + + +    + P
Sbjct: 291 ACCIGGRTWVAIDWLHLMVRSGVEPSVATFTTILHALCREGNVVEARKLFDGIQDMGIAP 350

Query: 648 DPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           + +  + +  GY          +A +V    +L EE+ T
Sbjct: 351 NAAIYNTLMDGY---------FKAREVAQASLLYEEMRT 380



 Score = 39.3 bits (90), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 32/139 (23%), Positives = 59/139 (42%)

Query: 513 NTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVR 572
           NT+L   +       A+E+ + M+  G+ P  ++  I++     I  + S   L   M+ 
Sbjct: 181 NTLLRGFLNVGMGFEALEVLRMMRGVGVRPGLSSITILLRLLLRIGDYGSVWKLFKDMIF 240

Query: 573 DGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDV 632
            G  P  +T+ A+I             +LL L+       DV+ +N ++   C  GR  V
Sbjct: 241 KGPRPSNLTFNAMICGFCRQHRVVVGESLLHLMPKFMCSPDVVTFNILINACCIGGRTWV 300

Query: 633 IEFIIEQMHQNKVQPDPST 651
               +  M ++ V+P  +T
Sbjct: 301 AIDWLHLMVRSGVEPSVAT 319


>gi|302813417|ref|XP_002988394.1| hypothetical protein SELMODRAFT_128001 [Selaginella moellendorffii]
 gi|300143796|gb|EFJ10484.1| hypothetical protein SELMODRAFT_128001 [Selaginella moellendorffii]
          Length = 388

 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 77/337 (22%), Positives = 137/337 (40%), Gaps = 31/337 (9%)

Query: 332 DGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ--- 388
           +GF RA      L   +  L++M++    P + T  TL     K    D A  LL+Q   
Sbjct: 19  NGFARA----GHLDGALGTLRMMRKAGCDPDEVTYNTLIDVFHKLERFDSARELLEQMWD 74

Query: 389 ------ISRCTNPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGN 441
                 +   T     ++F   C+      +A  I   M     +PD+ TY  L S    
Sbjct: 75  SGIRPGVMAETYNNVIASFCEVCNV----RKAKGILELMIDSGCKPDVVTYNTLISGLCK 130

Query: 442 VNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFC 501
           V    +   +  +++ A   N I  +   N +  S        K   A+ ++ E+I   C
Sbjct: 131 VRRADDALQLMREMEPAP--NTITYNTVINGLWRSR-------KDTEAQALLDEMISVGC 181

Query: 502 DSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFK 561
               P    TYN V+ +L  ++E  +A+++F  M+      +  T+  ++D     +  +
Sbjct: 182 ----PFSVSTYNCVIANLCRSREMEKAVDVFLYMRKKKCETDEVTFATLVDGFLRDKRLE 237

Query: 562 SASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTIL 621
            A   +  M R G      +YT L+  L D G   +A  + +L+   G    ++ YN +L
Sbjct: 238 DAGGTLDWMARAGIPSDVKSYTKLLNALCDRGSAQKACEIFNLMVDRGYAPTLVSYNVLL 297

Query: 622 KKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
           K  C+  R++    +  +M + ++QPD  +   V  G
Sbjct: 298 KGLCKALRVEHALVLFREMQEREIQPDVVSYTTVIKG 334



 Score = 56.2 bits (134), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 69/169 (40%), Gaps = 5/169 (2%)

Query: 494 RELIQYFCDSKTPLGT--PTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI 551
           REL++   DS    G    TYN V+ S  E     +A  I + M   G  P+  TYN +I
Sbjct: 66  RELLEQMWDSGIRPGVMAETYNNVIASFCEVCNVRKAKGILELMIDSGCKPDVVTYNTLI 125

Query: 552 DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIP 611
                +R    A  L+  M      P T+TY  +I  L       EA  LLD +   G P
Sbjct: 126 SGLCKVRRADDALQLMREMEP---APNTITYNTVINGLWRSRKDTEAQALLDEMISVGCP 182

Query: 612 HDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYV 660
             V  YN ++   C    ++    +   M + K + D  T   +  G++
Sbjct: 183 FSVSTYNCVIANLCRSREMEKAVDVFLYMRKKKCETDEVTFATLVDGFL 231



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 78/360 (21%), Positives = 144/360 (40%), Gaps = 40/360 (11%)

Query: 298 DVIHACGRTQNSGLAEQLMLQMQSLGLQPS--SHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           DV H   R  +   A +L+ QM   G++P   + TY+  I +      +R    +L++M 
Sbjct: 54  DVFHKLERFDS---ARELLEQMWDSGIRPGVMAETYNNVIASFCEVCNVRKAKGILELMI 110

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAI 415
            +  KP   T  TL     K    D A  L+ ++    N   ++  +       K   A 
Sbjct: 111 DSGCKPDVVTYNTLISGLCKVRRADDALQLMREMEPAPNTITYNTVINGLWRSRKDTEAQ 170

Query: 416 KIFAKMRQKLRP-DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQ 474
            +  +M     P  + TY  + +            N+    +  K ++   + M +   +
Sbjct: 171 ALLDEMISVGCPFSVSTYNCVIA------------NLCRSREMEKAVDVF-LYMRKKKCE 217

Query: 475 HSHISMKNLLKALGAEGMIRE--------LIQYFCDSKTPLGTPTYNTVLHSLVEAQESH 526
              ++   L+     +G +R+         + +   +  P    +Y  +L++L +   + 
Sbjct: 218 TDEVTFATLV-----DGFLRDKRLEDAGGTLDWMARAGIPSDVKSYTKLLNALCDRGSAQ 272

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMI-DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
           +A EIF  M   G  P   +YN+++   C  +R  + A  L   M      P  ++YT +
Sbjct: 273 KACEIFNLMVDRGYAPTLVSYNVLLKGLCKALR-VEHALVLFREMQEREIQPDVVSYTTV 331

Query: 586 IKILLDYGDFDEALNLL-DLVSLEGIPHDVLLYNTILKKACEK-GRIDVIEFIIEQMHQN 643
           IK L      DEA++L  D   LE  P+D+   +  L+   EK GR++    +  +  QN
Sbjct: 332 IKGLCAARRIDEAIDLFRDTSFLE--PNDIT--HETLRIGLEKSGRLEDYSSVTGRKDQN 387



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 79/365 (21%), Positives = 150/365 (41%), Gaps = 33/365 (9%)

Query: 153 GIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELL----KLAVWQKN 208
            + P + ++NS +   A+   +  A   L +M       +EVTY  L+    KL  +   
Sbjct: 6   AVAPNVVIFNSVVNGFARAGHLDGALGTLRMMRKAGCDPDEVTYNTLIDVFHKLERFDSA 65

Query: 209 LSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYI-NRT 267
              + ++W+  I+   ++  +    + SF  + +++ A   L+ M+       +   N  
Sbjct: 66  RELLEQMWDSGIRPGVMA-ETYNNVIASFCEVCNVRKAKGILELMIDSGCKPDVVTYNTL 124

Query: 268 SEGRLRSSRLDIPIPLNALPVMKVLR-----WSFSDVIHACGRTQNSGLAEQLMLQMQSL 322
             G  +  R D     +AL +M+ +       +++ VI+   R++    A+ L+ +M S+
Sbjct: 125 ISGLCKVRRAD-----DALQLMREMEPAPNTITYNTVINGLWRSRKDTEAQALLDEMISV 179

Query: 323 GLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLA 382
           G   S  TY+  I  +   R +   ++V   M++   +  + T ATL     +   L+ A
Sbjct: 180 GCPFSVSTYNCVIANLCRSREMEKAVDVFLYMRKKKCETDEVTFATLVDGFLRDKRLEDA 239

Query: 383 EALLDQISRCTNP---KPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSL 438
              LD ++R   P   K ++  L A       ++A +IF  M  +   P + +Y +L  L
Sbjct: 240 GGTLDWMARAGIPSDVKSYTKLLNALCDRGSAQKACEIFNLMVDRGYAPTLVSYNVL--L 297

Query: 439 FGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQ 498
            G   A   E  +            +  +M    IQ   +S   ++K L A   I E I 
Sbjct: 298 KGLCKALRVEHAL-----------VLFREMQEREIQPDVVSYTTVIKGLCAARRIDEAID 346

Query: 499 YFCDS 503
            F D+
Sbjct: 347 LFRDT 351



 Score = 47.0 bits (110), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 60/137 (43%), Gaps = 2/137 (1%)

Query: 539 GIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEA 598
            + PN   +N +++  +       A   + MM + G  P  +TY  LI +      FD A
Sbjct: 6   AVAPNVVIFNSVVNGFARAGHLDGALGTLRMMRKAGCDPDEVTYNTLIDVFHKLERFDSA 65

Query: 599 LNLLDLVSLEGIPHDVL--LYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVF 656
             LL+ +   GI   V+   YN ++   CE   +   + I+E M  +  +PD  T + + 
Sbjct: 66  RELLEQMWDSGIRPGVMAETYNNVIASFCEVCNVRKAKGILELMIDSGCKPDVVTYNTLI 125

Query: 657 SGYVNCGFHNSAMEALQ 673
           SG       + A++ ++
Sbjct: 126 SGLCKVRRADDALQLMR 142


>gi|242067351|ref|XP_002448952.1| hypothetical protein SORBIDRAFT_05g002320 [Sorghum bicolor]
 gi|241934795|gb|EES07940.1| hypothetical protein SORBIDRAFT_05g002320 [Sorghum bicolor]
          Length = 455

 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 84/394 (21%), Positives = 152/394 (38%), Gaps = 59/394 (14%)

Query: 299 VIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNN 358
           ++H  G          L+  M + G+ P+ H ++ F  A      +   M++   M+Q+ 
Sbjct: 1   MLHGYGNKGALSEMHDLLNLMVANGISPNHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHG 60

Query: 359 LKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPK--PFSAFLAACDTMDKPERAI 415
           L P   +   L     K   +D AE   +Q I+    P    FS+ +    ++DK E+  
Sbjct: 61  LSPDAVSYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFSSLVYGLCSIDKWEKVE 120

Query: 416 KIFAKM---------------------------RQKL---------RPDIRTYELLFSLF 439
           ++F +M                            Q+L         RPD+ +Y  L    
Sbjct: 121 ELFFEMLNVGIHPNIVFFNTILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLI--- 177

Query: 440 GNVNAPYEEGN-MFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQ 498
                   +G+ +   +D A ++  +E  M    ++ +  S   LL      G I     
Sbjct: 178 --------DGHCLAGTIDEASKL--LE-GMVSVGLKPNSFSYNTLLHGYCKAGRIDSAYS 226

Query: 499 YF----CDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCC 554
            F     +  TP G  TYNT+LH L + +    A E++  M   G      TYN +++  
Sbjct: 227 LFRKMLSNGITP-GVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKWGIYTYNTILNGL 285

Query: 555 SIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDV 614
               C   A  +   +   G     +T+T +I  LL  G  ++A++L   +   G+  DV
Sbjct: 286 CKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIPANGLVPDV 345

Query: 615 LLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
           + Y  + +   E+G ++  + +   M +N   P+
Sbjct: 346 VTYRVVAENLIEEGSLEEFDSLFSAMEKNGTAPN 379



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 79/317 (24%), Positives = 130/317 (41%), Gaps = 34/317 (10%)

Query: 398 FSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLF---GNV-------NAPY 446
           FSA+ A C  +DK   A+ IF KMRQ  L PD  +Y  L       G V       N   
Sbjct: 37  FSAY-AKCGMIDK---AMDIFNKMRQHGLSPDAVSYGALIDALCKLGRVDDAEVKFNQMI 92

Query: 447 EEGN-----MFSQ-------VDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIR 494
            EG      +FS        +D  +++  +  +M    I  + +    +L  L  EG + 
Sbjct: 93  NEGVTPNIVVFSSLVYGLCSIDKWEKVEELFFEMLNVGIHPNIVFFNTILCNLCKEGRVM 152

Query: 495 ELIQYFCDSKTPLGTP----TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIM 550
           E  Q   DS   +G      +YNT++     A     A ++ + M + G+ PN+ +YN +
Sbjct: 153 EG-QRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVGLKPNSFSYNTL 211

Query: 551 IDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNL-LDLVSLEG 609
           +          SA +L   M+ +G  P  +TY  ++  L     F EA  L L++++  G
Sbjct: 212 LHGYCKAGRIDSAYSLFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKELYLNMIN-SG 270

Query: 610 IPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAM 669
               +  YNTIL   C+   +D    + + +    +Q +  T   +    +  G    AM
Sbjct: 271 TKWGIYTYNTILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAM 330

Query: 670 EALQVLSMRMLCEEVST 686
           +    +    L  +V T
Sbjct: 331 DLFAAIPANGLVPDVVT 347



 Score = 59.7 bits (143), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 88/205 (42%), Gaps = 5/205 (2%)

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQE 524
           M  N I  +H        A    GMI + +  F   +    +P   +Y  ++ +L +   
Sbjct: 21  MVANGISPNHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPDAVSYGALIDALCKLGR 80

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMI-DCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
              A   F QM   G+ PN   ++ ++   CSI + ++    L   M+  G +P  + + 
Sbjct: 81  VDDAEVKFNQMINEGVTPNIVVFSSLVYGLCSIDK-WEKVEELFFEMLNVGIHPNIVFFN 139

Query: 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
            ++  L   G   E   L+D +   G+  DV+ YNT++   C  G ID    ++E M   
Sbjct: 140 TILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLLEGMVSV 199

Query: 644 KVQPDPSTCHFVFSGYVNCGFHNSA 668
            ++P+  + + +  GY   G  +SA
Sbjct: 200 GLKPNSFSYNTLLHGYCKAGRIDSA 224


>gi|302825350|ref|XP_002994298.1| hypothetical protein SELMODRAFT_138440 [Selaginella moellendorffii]
 gi|300137829|gb|EFJ04642.1| hypothetical protein SELMODRAFT_138440 [Selaginella moellendorffii]
          Length = 577

 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 87/386 (22%), Positives = 163/386 (42%), Gaps = 45/386 (11%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           S+S VI A  + Q    A +   +M+++G  P+  TY   I  +     +     +L  +
Sbjct: 110 SYSTVIDALCKAQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRVDEAYSLLMQL 169

Query: 355 QQNNLKPQ----DSTIATLSVEC--SKALELDLAEALLDQISRCTNPKPFSAFLAACDTM 408
           +  ++ P+    ++ +     +   S+ LEL L    + +     N   F+A L A    
Sbjct: 170 KGEDMVPRAMYYNAVVNGFKRQGKPSECLELLLH---MKEKGFGINIIDFNAMLHALWKN 226

Query: 409 DKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMD 467
           D+ E+A + F ++ +   +P++ TY +  ++ G   A         +VD A RI    ++
Sbjct: 227 DEQEKACQFFERLLKSGKKPNVVTYNV--AVHGLCKA--------GKVDEAYRIL---LE 273

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQE 524
           M  + +    I+  +++      G + +    F         P   T+ T+LH   E ++
Sbjct: 274 MVESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKK 333

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
           S  A  + + M   G  P   TYN+++DC       +SA  +   M R    P   TY  
Sbjct: 334 SREAFRVHEDMVNAGFIPGLQTYNVLMDCVCGADSVESALEIYHKMKRKKRQPDANTYAP 393

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID--------VIEF- 635
           LI+ L      DEA   LD++  + +  +  + + +++  C++G +D        V+E  
Sbjct: 394 LIQCLCRARRVDEAKEFLDVMEADNVVPNGAICHALVEVLCKQGEVDEACSVLDNVVEIC 453

Query: 636 ----------IIEQMHQNKVQPDPST 651
                     +IEQM    V+PD +T
Sbjct: 454 KAGEPDEAVEVIEQMVLKGVRPDEAT 479



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 109/561 (19%), Positives = 208/561 (37%), Gaps = 107/561 (19%)

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
           M+E+ + ++   +  ++Q LC+ G ++EA      +GE     P +  YN+ +    K +
Sbjct: 25  MKERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSMGEECS--PNVITYNTVVNGLCKAN 82

Query: 173 SMVHANLCLDLMDSRMVGK-----NEVTYTELLKLAVWQKNLSAVHEIWEDYIKHY---- 223
            +       D M+ R         + ++Y+ ++      + +   +E    Y K      
Sbjct: 83  RIDEGLELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQRVDKAYE----YFKRMRAVG 138

Query: 224 -SLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGK-LYINRTSEGRLRSSRLDIPI 281
            + ++ +    +    ++  +  AY  L  +    M+ + +Y N    G  R  +     
Sbjct: 139 CAPNVVTYSSLIDGLCKVDRVDEAYSLLMQLKGEDMVPRAMYYNAVVNGFKRQGK----- 193

Query: 282 PLNALPVMKVLR--------WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDG 333
           P   L ++  ++          F+ ++HA  +      A Q   ++   G +P+  TY+ 
Sbjct: 194 PSECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQFFERLLKSGKKPNVVTYNV 253

Query: 334 FIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ--ISR 391
            +  +     +     +L  M ++ + P   T +++     KA  +D A+ +  +  +  
Sbjct: 254 AVHGLCKAGKVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHE 313

Query: 392 CTNPKPFS---------------------------AFLAACDT----------MDKPERA 414
           C  P P +                            F+    T           D  E A
Sbjct: 314 CI-PHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQTYNVLMDCVCGADSVESA 372

Query: 415 IKIFAKMRQKLR-PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKR-INAIEMDMARNN 472
           ++I+ KM++K R PD  TY  L                  +VD AK  ++ +E D    N
Sbjct: 373 LEIYHKMKRKKRQPDANTYAPLIQCLCRAR----------RVDEAKEFLDVMEADNVVPN 422

Query: 473 IQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVE---AQESHRAM 529
               H     L++ L  +G + E                  +VL ++VE   A E   A+
Sbjct: 423 GAICHA----LVEVLCKQGEVDEAC----------------SVLDNVVEICKAGEPDEAV 462

Query: 530 EIFKQMKTCGIPPNAATY-NIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
           E+ +QM   G+ P+ ATY  ++   C + R   SA A    M   G  P  +TYT LI  
Sbjct: 463 EVIEQMVLKGVRPDEATYVAVLRSLCGLDR-VDSAIAEFEKMASRGCAPGLVTYTLLIGE 521

Query: 589 LLDYGDFDEALNLLDLVSLEG 609
                  D+A  + + +   G
Sbjct: 522 ACSADMADDAFRIFEAMVAAG 542



 Score = 49.3 bits (116), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 75/171 (43%), Gaps = 9/171 (5%)

Query: 467 DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQ 523
           +M    ++   +    L++ L  +G I E ++ F  S     +P   TYNTV++ L +A 
Sbjct: 24  EMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQF-KSMGEECSPNVITYNTVVNGLCKAN 82

Query: 524 ESHRAMEIFKQMK-----TCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQ 578
                +E+F  M+     + G  P+  +Y+ +ID     +    A      M   G  P 
Sbjct: 83  RIDEGLELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQRVDKAYEYFKRMRAVGCAPN 142

Query: 579 TMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
            +TY++LI  L      DEA +LL  +  E +    + YN ++     +G+
Sbjct: 143 VVTYSSLIDGLCKVDRVDEAYSLLMQLKGEDMVPRAMYYNAVVNGFKRQGK 193



 Score = 45.4 bits (106), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 30/50 (60%)

Query: 582 YTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
           YT +I      G  D+A  LLD +   G+  DVLL++T+++  C KGRID
Sbjct: 2   YTTVINGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRID 51



 Score = 41.6 bits (96), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 65/153 (42%), Gaps = 8/153 (5%)

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID-CCSIIRCFKSASALVSMM 570
           Y TV++   +A +  +A E+  +MK  G+  +   ++ +I   C   R  ++     SM 
Sbjct: 2   YTTVINGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSM- 60

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLV-----SLEGIPHDVLLYNTILKKAC 625
             +   P  +TY  ++  L      DE L L D +     +  G   DV+ Y+T++   C
Sbjct: 61  -GEECSPNVITYNTVVNGLCKANRIDEGLELFDDMEKRYEASHGCEPDVISYSTVIDALC 119

Query: 626 EKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
           +  R+D      ++M      P+  T   +  G
Sbjct: 120 KAQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDG 152



 Score = 39.3 bits (90), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 37/167 (22%), Positives = 70/167 (41%), Gaps = 8/167 (4%)

Query: 512 YNTVLHSLVEAQESHRAMEIFKQM-KTCGIPPNAATYNIMID-CCSIIRCFKSASALVSM 569
           ++T++  L        A+E FK M + C   PN  TYN +++  C   R  +       M
Sbjct: 37  HSTLIQGLCRKGRIDEALEQFKSMGEECS--PNVITYNTVVNGLCKANRIDEGLELFDDM 94

Query: 570 MVR----DGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKAC 625
             R     G  P  ++Y+ +I  L      D+A      +   G   +V+ Y++++   C
Sbjct: 95  EKRYEASHGCEPDVISYSTVIDALCKAQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLC 154

Query: 626 EKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEAL 672
           +  R+D    ++ Q+    + P     + V +G+   G  +  +E L
Sbjct: 155 KVDRVDEAYSLLMQLKGEDMVPRAMYYNAVVNGFKRQGKPSECLELL 201


>gi|334185431|ref|NP_188439.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|322510063|sp|Q5G1S8.2|PP241_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g18110, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 1270; Flags: Precursor
 gi|9294066|dbj|BAB02023.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642528|gb|AEE76049.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1440

 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 103/459 (22%), Positives = 178/459 (38%), Gaps = 83/459 (18%)

Query: 170 KLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFS 229
           K+ S+       D++D+R+V      Y  ++K        S   E W+           +
Sbjct: 133 KILSLKSNQFVADILDARLVQMTPTDYCFVVK--------SVGQESWQR----------A 174

Query: 230 LRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVM 289
           L  F W      +L+  +     MVA A++G L       GR     L + I   A P +
Sbjct: 175 LEVFEW-----LNLRHWHSPNARMVA-AILGVL-------GRWNQESLAVEIFTRAEPTV 221

Query: 290 KVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGM- 348
                 ++ ++    R+     A++L+  M+  G  P   +++  I A +   GL   + 
Sbjct: 222 GDRVQVYNAMMGVYSRSGKFSKAQELVDAMRQRGCVPDLISFNTLINARLKSGGLTPNLA 281

Query: 349 -EVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDT 407
            E+L +++ + L+P   T  TL   CS+   LD                           
Sbjct: 282 VELLDMVRNSGLRPDAITYNTLLSACSRDSNLD--------------------------- 314

Query: 408 MDKPERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM 466
                 A+K+F  M   + +PD+ TY  + S++G      E   +F             M
Sbjct: 315 -----GAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEAERLF-------------M 356

Query: 467 DMARNNIQHSHISMKNLLKALGAE---GMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQ 523
           ++         ++  +LL A   E     ++E+ Q            TYNT++H   +  
Sbjct: 357 ELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQG 416

Query: 524 ESHRAMEIFKQMKT-CGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTY 582
           +   A++++K MK   G  P+A TY ++ID          A+AL+S M+  G  P   TY
Sbjct: 417 QLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAALMSEMLDVGIKPTLQTY 476

Query: 583 TALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTIL 621
           +ALI      G  +EA +    +   G   D L Y+ +L
Sbjct: 477 SALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVML 515



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 69/328 (21%), Positives = 135/328 (41%), Gaps = 41/328 (12%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           W+++ +I   GR   +  AE+L ++++  G  P + TY+  + A   +R      EV + 
Sbjct: 333 WTYNAMISVYGRCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQ 392

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFS-AFLAACDTMDKPE 412
           MQ+      + T  T+     K  +LDLA  L   +   +   P +  +    D++ K  
Sbjct: 393 MQKMGFGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKAN 452

Query: 413 RAIKIFAKMRQKL----RPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
           R ++  A M + L    +P ++TY  L   +       E  + FS              M
Sbjct: 453 RTVEAAALMSEMLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSC-------------M 499

Query: 469 ARNNIQHSHISMKNLLKAL-------GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVE 521
            R+  +  +++   +L  L        A G+ R++I    D  TP  T  Y  ++  L++
Sbjct: 500 LRSGTKPDNLAYSVMLDVLLRGNETRKAWGLYRDMIS---DGHTPSYT-LYELMILGLMK 555

Query: 522 AQESHRAMEIFKQMKT-CGIPPNAATYNIMIDCCSII---RCFKSASALVSMMVRDGFYP 577
              S    +  + M+  CG+ P        ++  S++    CF  A+  + + + +G+  
Sbjct: 556 ENRSDDIQKTIRDMEELCGMNP--------LEISSVLVKGECFDLAARQLKVAITNGYEL 607

Query: 578 QTMTYTALIKILLDYGDFDEALNLLDLV 605
           +  T  +++      G   EA  LL+ +
Sbjct: 608 ENDTLLSILGSYSSSGRHSEAFELLEFL 635



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/278 (22%), Positives = 114/278 (41%), Gaps = 20/278 (7%)

Query: 398 FSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVD 456
           ++A +       K  +A ++   MRQ+   PD+ ++  L      +NA  + G +   + 
Sbjct: 228 YNAMMGVYSRSGKFSKAQELVDAMRQRGCVPDLISFNTL------INARLKSGGLTPNL- 280

Query: 457 SAKRINAIEM-DMARNN-IQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---T 511
                 A+E+ DM RN+ ++   I+   LL A   +  +   ++ F D +     P   T
Sbjct: 281 ------AVELLDMVRNSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWT 334

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           YN ++        +  A  +F +++  G  P+A TYN ++   +  R  +    +   M 
Sbjct: 335 YNAMISVYGRCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQ 394

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLL-DLVSLEGIPHDVLLYNTILKKACEKGRI 630
           + GF    MTY  +I +    G  D AL L  D+  L G   D + Y  ++    +  R 
Sbjct: 395 KMGFGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRT 454

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSA 668
                ++ +M    ++P   T   +  GY   G    A
Sbjct: 455 VEAAALMSEMLDVGIKPTLQTYSALICGYAKAGKREEA 492



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 66/156 (42%), Gaps = 3/156 (1%)

Query: 515 VLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDG 574
           +L  L    +   A+EIF + +   +      YN M+   S    F  A  LV  M + G
Sbjct: 197 ILGVLGRWNQESLAVEIFTRAEPT-VGDRVQVYNAMMGVYSRSGKFSKAQELVDAMRQRG 255

Query: 575 FYPQTMTYTALIKILLDYGDFDE--ALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDV 632
             P  +++  LI   L  G      A+ LLD+V   G+  D + YNT+L        +D 
Sbjct: 256 CVPDLISFNTLINARLKSGGLTPNLAVELLDMVRNSGLRPDAITYNTLLSACSRDSNLDG 315

Query: 633 IEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSA 668
              + E M  ++ QPD  T + + S Y  CG    A
Sbjct: 316 AVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEA 351



 Score = 57.0 bits (136), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 79/165 (47%), Gaps = 3/165 (1%)

Query: 512  YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
            +N++L      ++  + +++++++K  G+ P+  TYN +I      R  +    L+  M 
Sbjct: 930  WNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGYLLMQQMR 989

Query: 572  RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
              G  P+  TY +LI         ++A  L + +  +G+  D   Y+T++K + + G   
Sbjct: 990  NLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDS 1049

Query: 632  VIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
              E +++ M    ++P  +T H +   Y + G   +  EA +VLS
Sbjct: 1050 KAEKLLQMMKNAGIEPTLATMHLLMVSYSSSG---NPQEAEKVLS 1091



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 52/265 (19%), Positives = 109/265 (41%), Gaps = 19/265 (7%)

Query: 412 ERAIKIFA--KMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDS--AKRINAIEMD 467
           +RA+++F    +R    P+ R    +  + G  N       +F++ +     R+      
Sbjct: 172 QRALEVFEWLNLRHWHSPNARMVAAILGVLGRWNQESLAVEIFTRAEPTVGDRVQVYNAM 231

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQ--ES 525
           M   +        + L+ A+   G + +LI             ++NT++++ +++     
Sbjct: 232 MGVYSRSGKFSKAQELVDAMRQRGCVPDLI-------------SFNTLINARLKSGGLTP 278

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
           + A+E+   ++  G+ P+A TYN ++  CS       A  +   M      P   TY A+
Sbjct: 279 NLAVELLDMVRNSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAM 338

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           I +    G   EA  L   + L+G   D + YN++L     +   + ++ + +QM +   
Sbjct: 339 ISVYGRCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGF 398

Query: 646 QPDPSTCHFVFSGYVNCGFHNSAME 670
             D  T + +   Y   G  + A++
Sbjct: 399 GKDEMTYNTIIHMYGKQGQLDLALQ 423



 Score = 53.5 bits (127), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 76/389 (19%), Positives = 147/389 (37%), Gaps = 30/389 (7%)

Query: 296  FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
            ++D+I A G+ +    AE ++  ++  G  P   T++  + A            +   M 
Sbjct: 755  YTDIIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTMM 814

Query: 356  QNNLKPQDSTIATLSVECSKALELD--------LAEALLD---QISRCTNPKPFSAFLAA 404
            ++   P   +I  L      AL +D        + E L D   +IS+ +      AF  A
Sbjct: 815  RDGPSPTVESINILL----HALCVDGRLEELYVVVEELQDMGFKISKSSILLMLDAFARA 870

Query: 405  CDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINA 463
             +  +      KI++ M+     P IR Y ++  L        +   M S+++ A     
Sbjct: 871  GNIFE----VKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEAN---- 922

Query: 464  IEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQ 523
             ++++A  N      SM  +  A+       ++ Q   ++       TYNT++      +
Sbjct: 923  FKVELAIWN------SMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDR 976

Query: 524  ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
                   + +QM+  G+ P   TY  +I      +C + A  L   ++  G       Y 
Sbjct: 977  RPEEGYLLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYH 1036

Query: 584  ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
             ++KI  D G   +A  LL ++   GI   +   + ++      G     E ++  +   
Sbjct: 1037 TMMKISRDSGSDSKAEKLLQMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKDT 1096

Query: 644  KVQPDPSTCHFVFSGYVNCGFHNSAMEAL 672
            +V+        V   Y+    +NS +E L
Sbjct: 1097 EVELTTLPYSSVIDAYLRSKDYNSGIERL 1125



 Score = 53.1 bits (126), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 60/290 (20%), Positives = 119/290 (41%), Gaps = 24/290 (8%)

Query: 394 NPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFS 453
           N +  +A L      ++   A++IF +    +   ++ Y  +  +       Y     FS
Sbjct: 190 NARMVAAILGVLGRWNQESLAVEIFTRAEPTVGDRVQVYNAMMGV-------YSRSGKFS 242

Query: 454 Q----VDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGT 509
           +    VD+ ++   +   ++ N + ++ +    L   L  E     L+    +S      
Sbjct: 243 KAQELVDAMRQRGCVPDLISFNTLINARLKSGGLTPNLAVE-----LLDMVRNSGLRPDA 297

Query: 510 PTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASA--LV 567
            TYNT+L +         A+++F+ M+     P+  TYN MI      RC  +A A  L 
Sbjct: 298 ITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYG--RCGLAAEAERLF 355

Query: 568 SMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEK 627
             +   GF+P  +TY +L+       + ++   +   +   G   D + YNTI+    ++
Sbjct: 356 MELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQ 415

Query: 628 GRIDVIEFIIEQMHQ-NKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
           G++D+   + + M   +   PD  T   +     + G  N  +EA  ++S
Sbjct: 416 GQLDLALQLYKDMKGLSGRNPDAITYTVLID---SLGKANRTVEAAALMS 462



 Score = 39.7 bits (91), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 102/566 (18%), Positives = 197/566 (34%), Gaps = 82/566 (14%)

Query: 156 PILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEI 215
           P L  YN+ +    +      A      ++ +    + VTY  LL     ++N   V E+
Sbjct: 330 PDLWTYNAMISVYGRCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEV 389

Query: 216 WEDYIK--------HYSLSIFSLRK---FVWSFTRLRDLKSAY----ETLQHMVALAMMG 260
           ++   K         Y+  I    K      +    +D+K       + + + V +  +G
Sbjct: 390 YQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLG 449

Query: 261 KLYINRTSE-GRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQM 319
           K   NRT E   L S  LD+ I     P ++    ++S +I    +      AE     M
Sbjct: 450 K--ANRTVEAAALMSEMLDVGIK----PTLQ----TYSALICGYAKAGKREEAEDTFSCM 499

Query: 320 QSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKA-LE 378
              G +P +  Y   +  ++     R    + + M  +   P  +    + +   K    
Sbjct: 500 LRSGTKPDNLAYSVMLDVLLRGNETRKAWGLYRDMISDGHTPSYTLYELMILGLMKENRS 559

Query: 379 LDLAEALLDQISRCT-NPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFS 437
            D+ + + D    C  NP   S+ L   +  D   R +K+      +L  D      L S
Sbjct: 560 DDIQKTIRDMEELCGMNPLEISSVLVKGECFDLAARQLKVAITNGYELENDT-----LLS 614

Query: 438 LFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELI 497
           + G+ ++       F  ++  K   +    +    +   H  + NL  AL          
Sbjct: 615 ILGSYSSSGRHSEAFELLEFLKEHASGSKRLITEALIVLHCKVNNLSAALD--------- 665

Query: 498 QYFCDSKTP---LGTPT-YNTVLHSLVEAQESHRAMEIFKQMK---------TC------ 538
           +YF D        G+ T Y T+LH  V  +    A ++F  ++          C      
Sbjct: 666 EYFADPCVHGWCFGSSTMYETLLHCCVANEHYAEASQVFSDLRLSGCEASESVCKSMVVV 725

Query: 539 ----GIPPNA-----------------ATYNIMIDCCSIIRCFKSASALVSMMVRDGFYP 577
               G P  A                   Y  +I+     + ++ A ++V  + + G  P
Sbjct: 726 YCKLGFPETAHQVVNQAETKGFHFACSPMYTDIIEAYGKQKLWQKAESVVGNLRQSGRTP 785

Query: 578 QTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFII 637
              T+ +L+      G ++ A  + + +  +G    V   N +L   C  GR++ +  ++
Sbjct: 786 DLKTWNSLMSAYAQCGCYERARAIFNTMMRDGPSPTVESINILLHALCVDGRLEELYVVV 845

Query: 638 EQMHQNKVQPDPSTCHFVFSGYVNCG 663
           E++     +   S+   +   +   G
Sbjct: 846 EELQDMGFKISKSSILLMLDAFARAG 871


>gi|302763305|ref|XP_002965074.1| hypothetical protein SELMODRAFT_83127 [Selaginella moellendorffii]
 gi|300167307|gb|EFJ33912.1| hypothetical protein SELMODRAFT_83127 [Selaginella moellendorffii]
          Length = 484

 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 87/379 (22%), Positives = 155/379 (40%), Gaps = 24/379 (6%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           +SF+ +I      +N G A + +  M+SLG+ P    Y+  ++    D G R G  ++K 
Sbjct: 80  YSFTIIIQCFCNVRNPGRAWRYLGYMRSLGIPPDVTAYNVVLKGY-CDLG-RVGRALIKF 137

Query: 354 MQQN-NLKPQDSTIATLSVECSKALELDLAEALLDQISR-CTNPKPF--SAFLAACDTMD 409
            +     KP  +T  T+     K  ++D A  L  ++     +P  F  S  +      +
Sbjct: 138 GKMGKTCKPNVATYNTVINGLCKFGKIDWAVHLFTRLPHDLVDPDGFTYSTLVHGLCQAE 197

Query: 410 KPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
           + E AIK++  M +        Y+      G+  A     + F +         +   M 
Sbjct: 198 RLEAAIKVYDMMLEA------NYD------GDAGAYNAMADGFCKERRVDEALEVLKTMI 245

Query: 470 RNNIQHSHISMKNLLKALGA-EGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQES 525
           +   + S ++   ++  +   +  I E   L Q    S  P    TY T++  L +  E 
Sbjct: 246 QRRCKPSVVTYNCIINGVCQYKNRIEEAYRLFQQMVGSDCPPNAVTYGTMILGLSKIYEV 305

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
            R +E+FK M   G+ P+   Y+ +I     +R    A +++    R+   P    YT L
Sbjct: 306 QRCLELFKGMSKAGLSPDGYAYHSLIYAFVKVRKLDEAKSILQDAARNHVGPDVYMYTTL 365

Query: 586 IKILLDYGD--FDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
           I           DEAL L   +    +  +V+ YN +L+  C+ GR D    I ++M + 
Sbjct: 366 ISGYCRARKPRVDEALLLFQNMKDRRVWPNVITYNIVLRGLCKTGRFDEAYQIFQEMFKV 425

Query: 644 KVQPDPSTCHFVFSGYVNC 662
           K  P+  T   +  G ++C
Sbjct: 426 KCSPNRMTFKVMTMGMIHC 444



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 83/197 (42%), Gaps = 21/197 (10%)

Query: 496 LIQYFCDSKTP------------LGTP----TYNTVLHSLVEAQESHRAMEIFKQM-KTC 538
           +IQ FC+ + P            LG P     YN VL    +     RA+  F +M KTC
Sbjct: 85  IIQCFCNVRNPGRAWRYLGYMRSLGIPPDVTAYNVVLKGYCDLGRVGRALIKFGKMGKTC 144

Query: 539 GIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEA 598
              PN ATYN +I+          A  L + +  D   P   TY+ L+  L      + A
Sbjct: 145 --KPNVATYNTVINGLCKFGKIDWAVHLFTRLPHDLVDPDGFTYSTLVHGLCQAERLEAA 202

Query: 599 LNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
           + + D++       D   YN +    C++ R+D    +++ M Q + +P   T + + +G
Sbjct: 203 IKVYDMMLEANYDGDAGAYNAMADGFCKERRVDEALEVLKTMIQRRCKPSVVTYNCIING 262

Query: 659 YVNCGFHNSAMEALQVL 675
              C + N   EA ++ 
Sbjct: 263 V--CQYKNRIEEAYRLF 277



 Score = 55.8 bits (133), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 60/140 (42%), Gaps = 1/140 (0%)

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           Y  +LH LV A+ +  A+  FK+       P+  ++ I+I C   +R    A   +  M 
Sbjct: 47  YTRLLHHLVRARRTREAVRFFKRELCAHCRPSLYSFTIIIQCFCNVRNPGRAWRYLGYMR 106

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
             G  P    Y  ++K   D G    AL     +     P +V  YNT++   C+ G+ID
Sbjct: 107 SLGIPPDVTAYNVVLKGYCDLGRVGRALIKFGKMGKTCKP-NVATYNTVINGLCKFGKID 165

Query: 632 VIEFIIEQMHQNKVQPDPST 651
               +  ++  + V PD  T
Sbjct: 166 WAVHLFTRLPHDLVDPDGFT 185



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/218 (20%), Positives = 85/218 (38%), Gaps = 8/218 (3%)

Query: 474 QHSHISMKNLLKALGAEGMIRELIQYF----CDSKTPLGTPTYNTVLHSLVEAQESHRAM 529
           +H       LL  L      RE +++F    C    P    ++  ++      +   RA 
Sbjct: 41  RHDVYCYTRLLHHLVRARRTREAVRFFKRELCAHCRP-SLYSFTIIIQCFCNVRNPGRAW 99

Query: 530 EIFKQMKTCGIPPNAATYNIMIDC-CSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
                M++ GIPP+   YN+++   C + R  ++      M       P   TY  +I  
Sbjct: 100 RYLGYMRSLGIPPDVTAYNVVLKGYCDLGRVGRALIKFGKMG--KTCKPNVATYNTVING 157

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
           L  +G  D A++L   +  + +  D   Y+T++   C+  R++    + + M +     D
Sbjct: 158 LCKFGKIDWAVHLFTRLPHDLVDPDGFTYSTLVHGLCQAERLEAAIKVYDMMLEANYDGD 217

Query: 649 PSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
               + +  G+      + A+E L+ +  R     V T
Sbjct: 218 AGAYNAMADGFCKERRVDEALEVLKTMIQRRCKPSVVT 255



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 62/279 (22%), Positives = 105/279 (37%), Gaps = 25/279 (8%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           +++S ++H   + +    A ++   M        +  Y+        +R +   +EVLK 
Sbjct: 184 FTYSTLVHGLCQAERLEAAIKVYDMMLEANYDGDAGAYNAMADGFCKERRVDEALEVLKT 243

Query: 354 MQQNNLKPQDSTI-ATLSVECSKALELDLAEALLDQI--SRC-TNPKPFSAFLAACDTMD 409
           M Q   KP   T    ++  C     ++ A  L  Q+  S C  N   +   +     + 
Sbjct: 244 MIQRRCKPSVVTYNCIINGVCQYKNRIEEAYRLFQQMVGSDCPPNAVTYGTMILGLSKIY 303

Query: 410 KPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
           + +R +++F  M +  L PD   Y  L   F  V           ++D AK   +I  D 
Sbjct: 304 EVQRCLELFKGMSKAGLSPDGYAYHSLIYAFVKVR----------KLDEAK---SILQDA 350

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRE-----LIQYFCDSKTPLGTPTYNTVLHSLVEAQ 523
           ARN++         L+         R      L Q   D +      TYN VL  L +  
Sbjct: 351 ARNHVGPDVYMYTTLISGYCRARKPRVDEALLLFQNMKDRRVWPNVITYNIVLRGLCKTG 410

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKS 562
               A +IF++M      PN  T+ +M     +I C K+
Sbjct: 411 RFDEAYQIFQEMFKVKCSPNRMTFKVMT--MGMIHCRKT 447



 Score = 49.3 bits (116), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 53/246 (21%), Positives = 99/246 (40%), Gaps = 17/246 (6%)

Query: 410 KPERAIKIFAK-MRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
           +   A++ F + +    RP + ++ ++   F NV  P         + S      I  D+
Sbjct: 59  RTREAVRFFKRELCAHCRPSLYSFTIIIQCFCNVRNPGRAWRYLGYMRSL----GIPPDV 114

Query: 469 ARNNIQHSHISMKNLLKALGAEGMI-RELIQYFCDSKT-PLGTPTYNTVLHSLVEAQESH 526
              N+         +LK     G + R LI++    KT      TYNTV++ L +  +  
Sbjct: 115 TAYNV---------VLKGYCDLGRVGRALIKFGKMGKTCKPNVATYNTVINGLCKFGKID 165

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
            A+ +F ++    + P+  TY+ ++         ++A  +  MM+   +      Y A+ 
Sbjct: 166 WAVHLFTRLPHDLVDPDGFTYSTLVHGLCQAERLEAAIKVYDMMLEANYDGDAGAYNAMA 225

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE-KGRIDVIEFIIEQMHQNKV 645
                    DEAL +L  +        V+ YN I+   C+ K RI+    + +QM  +  
Sbjct: 226 DGFCKERRVDEALEVLKTMIQRRCKPSVVTYNCIINGVCQYKNRIEEAYRLFQQMVGSDC 285

Query: 646 QPDPST 651
            P+  T
Sbjct: 286 PPNAVT 291



 Score = 46.6 bits (109), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 54/291 (18%), Positives = 107/291 (36%), Gaps = 23/291 (7%)

Query: 392 CTNPKP----FSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPY 446
           C + +P    F+  +     +  P RA +    MR   + PD+  Y ++   + ++    
Sbjct: 72  CAHCRPSLYSFTIIIQCFCNVRNPGRAWRYLGYMRSLGIPPDVTAYNVVLKGYCDLGRVG 131

Query: 447 EEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTP 506
                F ++    + N                +   ++  L   G I   +  F      
Sbjct: 132 RALIKFGKMGKTCKPNVA--------------TYNTVINGLCKFGKIDWAVHLFTRLPHD 177

Query: 507 LGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSA 563
           L  P   TY+T++H L +A+    A++++  M       +A  YN M D     R    A
Sbjct: 178 LVDPDGFTYSTLVHGLCQAERLEAAIKVYDMMLEANYDGDAGAYNAMADGFCKERRVDEA 237

Query: 564 SALVSMMVRDGFYPQTMTYTALIKILLDYGD-FDEALNLLDLVSLEGIPHDVLLYNTILK 622
             ++  M++    P  +TY  +I  +  Y +  +EA  L   +     P + + Y T++ 
Sbjct: 238 LEVLKTMIQRRCKPSVVTYNCIINGVCQYKNRIEEAYRLFQQMVGSDCPPNAVTYGTMIL 297

Query: 623 KACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
              +   +     + + M +  + PD    H +   +V     + A   LQ
Sbjct: 298 GLSKIYEVQRCLELFKGMSKAGLSPDGYAYHSLIYAFVKVRKLDEAKSILQ 348


>gi|242047602|ref|XP_002461547.1| hypothetical protein SORBIDRAFT_02g004530 [Sorghum bicolor]
 gi|241924924|gb|EER98068.1| hypothetical protein SORBIDRAFT_02g004530 [Sorghum bicolor]
          Length = 696

 Score = 80.5 bits (197), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 71/287 (24%), Positives = 118/287 (41%), Gaps = 32/287 (11%)

Query: 409 DKPERAIKIFAKMR----QKLRPDIRTYELLFSL----------FGNVNAPYEEG----- 449
           D P  A+ +F +M     +K+ PDI T+ +L S           F  +    + G     
Sbjct: 120 DGPALAVSMFNRMARAGAKKVAPDIATFGILISCCCDAGCLNLGFAALGQIIKTGLRAQA 179

Query: 450 --------NMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRE---LIQ 498
                    + ++  ++  +N +   M          S   LLK L AE    E   LI 
Sbjct: 180 VTFTPLLRTLCAEKRTSDAMNIVLRRMPELGCTPDVFSYTTLLKGLCAEKKCEEAAELIH 239

Query: 499 YFCDS--KTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSI 556
              +     P    +Y TV+H   +  +  +A  +F +M   GIPPN  T N +ID    
Sbjct: 240 MMAEDGDNCPPNVVSYTTVIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCK 299

Query: 557 IRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLL 616
           ++    A A++  M+ +   P   TY +LI   L  G + EA+ +L  +S +G   +V+ 
Sbjct: 300 VQAMDKAEAVLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVT 359

Query: 617 YNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
           Y+ ++   C+ G       I   M Q+  +P+ ST   +  GY   G
Sbjct: 360 YSMLIDCLCKSGLHAEAREIFNSMIQSGQKPNASTYGSLLHGYATEG 406



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 80/181 (44%), Gaps = 4/181 (2%)

Query: 489 AEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYN 548
           AE +++++I    D        TYN+++H  + + +   A+ I K+M   G  PN  TY+
Sbjct: 306 AEAVLQQMI----DEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYS 361

Query: 549 IMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLE 608
           ++IDC         A  + + M++ G  P   TY +L+      G+  +  N+ DL+   
Sbjct: 362 MLIDCLCKSGLHAEAREIFNSMIQSGQKPNASTYGSLLHGYATEGNLVDMNNVKDLMVQN 421

Query: 609 GIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSA 668
           G+     ++N  +   C+ GR+D       +M Q    PD      V  G    G  + A
Sbjct: 422 GMRPGRHVFNIEIYAYCKCGRLDEASLTFNKMQQQGFMPDIVAYTTVIDGLCKIGRLDDA 481

Query: 669 M 669
           M
Sbjct: 482 M 482



 Score = 66.6 bits (161), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 85/170 (50%), Gaps = 5/170 (2%)

Query: 511 TYNTVLHSLVEAQESHRAMEI-FKQMKTCGIPPNAATYNIMI-DCCSIIRCFKSASALVS 568
           T+  +L +L   + +  AM I  ++M   G  P+  +Y  ++   C+  +C + A+ L+ 
Sbjct: 181 TFTPLLRTLCAEKRTSDAMNIVLRRMPELGCTPDVFSYTTLLKGLCAEKKC-EEAAELIH 239

Query: 569 MMVRDG--FYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE 626
           MM  DG    P  ++YT +I      GD  +A  L   +   GIP +V+  N+++   C+
Sbjct: 240 MMAEDGDNCPPNVVSYTTVIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCK 299

Query: 627 KGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
              +D  E +++QM    + P+ +T + +  GY++ G    A+  L+ +S
Sbjct: 300 VQAMDKAEAVLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMS 349



 Score = 65.9 bits (159), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 84/377 (22%), Positives = 150/377 (39%), Gaps = 20/377 (5%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           S++ VIH   +  + G A  L  +M   G+ P+  T +  I  +   + +     VL+ M
Sbjct: 254 SYTTVIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDKAEAVLQQM 313

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKP--- 411
              ++ P  +T  +L      + +   A  +L ++SR         +    D + K    
Sbjct: 314 IDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYSMLIDCLCKSGLH 373

Query: 412 ERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
             A +IF  M Q   +P+  TY  L   +        EGN+         +N ++  M +
Sbjct: 374 AEAREIFNSMIQSGQKPNASTYGSLLHGYAT------EGNLVD-------MNNVKDLMVQ 420

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHR 527
           N ++         + A    G + E    F   +     P    Y TV+  L +      
Sbjct: 421 NGMRPGRHVFNIEIYAYCKCGRLDEASLTFNKMQQQGFMPDIVAYTTVIDGLCKIGRLDD 480

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           AM  F QM   G+ P+  T+N +I   ++   ++ A  L   M+  G  P   T+ ++I 
Sbjct: 481 AMSRFCQMIDDGLSPDIITFNTLIHGFALHGKWEKAEELFYEMMDRGIPPNVNTFNSMID 540

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
            L   G   EA  L DL+   G   +V+ YNT++      G +  +  +++ M    ++P
Sbjct: 541 KLFKEGKVTEARKLFDLMPRAGAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDMLLIGLKP 600

Query: 648 DPSTCHFVFSGYVNCGF 664
              T + +  G V+ G 
Sbjct: 601 TAVTFNTLLDGMVSMGL 617


>gi|26449475|dbj|BAC41864.1| unknown protein [Arabidopsis thaliana]
 gi|29028966|gb|AAO64862.1| At5g25630 [Arabidopsis thaliana]
          Length = 574

 Score = 80.5 bits (197), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 85/384 (22%), Positives = 164/384 (42%), Gaps = 45/384 (11%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           F+ VI+A   + N   A Q +L+M+ LGL P++ TY+  I+      G+           
Sbjct: 118 FNAVINAFSESGNMEDAVQALLKMKELGLNPTTSTYNTLIKGY----GIAG--------- 164

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAI 415
               KP+ S         S+ L+L L E  +D      N + F+  + A     K E A 
Sbjct: 165 ----KPERS---------SELLDLMLEEGNVDV---GPNIRTFNVLVQAWCKKKKVEEAW 208

Query: 416 KIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQ 474
           ++  KM +  +RPD  TY  + + +       ++G    + +S      +  + A+ N +
Sbjct: 209 EVVKKMEECGVRPDTVTYNTIATCY------VQKGETV-RAESEVVEKMVMKEKAKPNGR 261

Query: 475 HSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEI 531
              I +    +    EG +R+    ++   + +       +N++++  VE  +     E+
Sbjct: 262 TCGIVVGGYCR----EGRVRDGLRFVRRMKEMRVEANLVVFNSLINGFVEVMDRDGIDEV 317

Query: 532 FKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLD 591
              MK C +  +  TY+ +++  S     + A+ +   MV+ G  P    Y+ L K  + 
Sbjct: 318 LTLMKECNVKADVITYSTVMNAWSSAGYMEKAAQVFKEMVKAGVKPDAHAYSILAKGYVR 377

Query: 592 YGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
                +A  LL+ + +E  P +V+++ T++   C  G +D    +  +M +  V P+  T
Sbjct: 378 AKGPKKAEELLETLIVESRP-NVVIFTTVISGWCSNGSMDDAMRVFNKMCKFGVSPNIKT 436

Query: 652 CHFVFSGYVNCGFHNSAMEALQVL 675
              +  GY+       A E LQ++
Sbjct: 437 FETLMWGYLEVKQPWKAEEVLQMM 460



 Score = 69.7 bits (169), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 93/204 (45%), Gaps = 8/204 (3%)

Query: 468 MARNNIQHSHISMKNLLKALGAE---GMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQE 524
           +A    + S IS   LL A+  +   G I  ++     S T L +  +N V+++  E+  
Sbjct: 71  LAETGHRPSLISYTTLLAAMTVQKQYGSISSIVSEVEQSGTKLDSIFFNAVINAFSESGN 130

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDG---FYPQTMT 581
              A++   +MK  G+ P  +TYN +I    I    + +S L+ +M+ +G     P   T
Sbjct: 131 MEDAVQALLKMKELGLNPTTSTYNTLIKGYGIAGKPERSSELLDLMLEEGNVDVGPNIRT 190

Query: 582 YTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEF-IIEQM 640
           +  L++        +EA  ++  +   G+  D + YNTI     +KG     E  ++E+M
Sbjct: 191 FNVLVQAWCKKKKVEEAWEVVKKMEECGVRPDTVTYNTIATCYVQKGETVRAESEVVEKM 250

Query: 641 -HQNKVQPDPSTCHFVFSGYVNCG 663
             + K +P+  TC  V  GY   G
Sbjct: 251 VMKEKAKPNGRTCGIVVGGYCREG 274



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/187 (21%), Positives = 82/187 (43%), Gaps = 38/187 (20%)

Query: 515 VLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDG 574
           +++ L+E    H A  +FK +   G  P+  +Y  ++   ++ + + S S++VS + + G
Sbjct: 51  LMNVLIERGRPHEAQTVFKTLAETGHRPSLISYTTLLAAMTVQKQYGSISSIVSEVEQSG 110

Query: 575 ------FY-----------------------------PQTMTYTALIKILLDYGDFDEAL 599
                 F+                             P T TY  LIK     G  + + 
Sbjct: 111 TKLDSIFFNAVINAFSESGNMEDAVQALLKMKELGLNPTTSTYNTLIKGYGIAGKPERSS 170

Query: 600 NLLDLVSLEG---IPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVF 656
            LLDL+  EG   +  ++  +N +++  C+K +++    ++++M +  V+PD  T + + 
Sbjct: 171 ELLDLMLEEGNVDVGPNIRTFNVLVQAWCKKKKVEEAWEVVKKMEECGVRPDTVTYNTIA 230

Query: 657 SGYVNCG 663
           + YV  G
Sbjct: 231 TCYVQKG 237


>gi|15224262|ref|NP_179484.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75099137|sp|O64624.1|PP163_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g18940
 gi|3004555|gb|AAC09028.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|15983785|gb|AAL10489.1| At2g18940/F19F24.14 [Arabidopsis thaliana]
 gi|38564280|gb|AAR23719.1| At2g18940/F19F24.14 [Arabidopsis thaliana]
 gi|330251736|gb|AEC06830.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 822

 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 71/328 (21%), Positives = 127/328 (38%), Gaps = 54/328 (16%)

Query: 378 ELDLAEALLDQI---SRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYE 433
           +  +A  LLD+I       + + ++  L A     K E+AI +F +M++    P + TY 
Sbjct: 190 QYSVAAKLLDKIPLQEYLLDVRAYTTILHAYSRTGKYEKAIDLFERMKEMGPSPTLVTYN 249

Query: 434 LLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMI 493
           ++  +FG +   +            ++I  +  +M    ++    +   +L A   EG++
Sbjct: 250 VILDVFGKMGRSW------------RKILGVLDEMRSKGLKFDEFTCSTVLSACAREGLL 297

Query: 494 RELIQYFCDSKT--------------------------------------PLGTPTYNTV 515
           RE  ++F + K+                                      P  + TYN +
Sbjct: 298 REAKEFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNEL 357

Query: 516 LHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGF 575
           + + V A  S  A  + + M   G+ PNA TY  +ID          A  L   M   G 
Sbjct: 358 VAAYVRAGFSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGC 417

Query: 576 YPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEF 635
            P T TY A++ +L      +E + +L  +   G   +   +NT+L     KG    +  
Sbjct: 418 VPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWNTMLALCGNKGMDKFVNR 477

Query: 636 IIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
           +  +M     +PD  T + + S Y  CG
Sbjct: 478 VFREMKSCGFEPDRDTFNTLISAYGRCG 505



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 118/592 (19%), Positives = 231/592 (39%), Gaps = 63/592 (10%)

Query: 116 KEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMV 175
           +E  L+ + Y  ++ A  + G  E+A +L   + E  G  P L  YN  L    K+    
Sbjct: 204 QEYLLDVRAYTTILHAYSRTGKYEKAIDLFERMKE-MGPSPTLVTYNVILDVFGKMGRSW 262

Query: 176 HANL-CLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFV 234
              L  LD M S+ +  +E T + +L     +  L    E                    
Sbjct: 263 RKILGVLDEMRSKGLKFDEFTCSTVLSACAREGLLREAKEF------------------- 303

Query: 235 WSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRW 294
             F  L+       T+ +   L + GK  +   +   L+       +  N+ P   V   
Sbjct: 304 --FAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKE------MEENSCPADSV--- 352

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           ++++++ A  R   S  A  ++  M   G+ P++ TY   I A          +++   M
Sbjct: 353 TYNELVAAYVRAGFSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSM 412

Query: 355 QQNNLKPQDSTI-ATLSVECSKALELDLAEALLDQISRCTNPK--PFSAFLAACDTMDKP 411
           ++    P   T  A LS+   K+   ++ + L D  S   +P    ++  LA C      
Sbjct: 413 KEAGCVPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWNTMLALCGNKGMD 472

Query: 412 ERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSA------KRINAI 464
           +   ++F +M+     PD  T+  L S +G   +  +   M+ ++  A         NA+
Sbjct: 473 KFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNAL 532

Query: 465 EMDMARNNIQHSHISMKNLLKALG---AEGMIRELIQYFCDSKTPLGT------------ 509
              +AR     S  ++ + +K+ G    E     ++Q +      LG             
Sbjct: 533 LNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIENRIKEGQI 592

Query: 510 -PTYNTVLHSLVEAQESHRAM----EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSAS 564
            P++  +L +L+ A    RA+      F   K  G  P+   +N M+   +    +  A 
Sbjct: 593 FPSW-MLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAE 651

Query: 565 ALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKA 624
            ++  +  DG  P  +TY +L+ + +  G+  +A  +L  +    +  D++ YNT++K  
Sbjct: 652 GILESIREDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGF 711

Query: 625 CEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
           C +G +     ++ +M +  ++P   T +   SGY   G      + ++ ++
Sbjct: 712 CRRGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGMFAEIEDVIECMA 763



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 95/493 (19%), Positives = 189/493 (38%), Gaps = 77/493 (15%)

Query: 237 FTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSF 296
           F R++++  +   + + V L + GK+       GR     L +   + +   +K   ++ 
Sbjct: 233 FERMKEMGPSPTLVTYNVILDVFGKM-------GRSWRKILGVLDEMRS-KGLKFDEFTC 284

Query: 297 SDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQ 356
           S V+ AC R      A++   +++S G +P + TY+  ++           + VLK M++
Sbjct: 285 STVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEE 344

Query: 357 NNLKPQDSTI----------ATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACD 406
           N+  P DS            A  S E +  +E+   + ++       N   ++  + A  
Sbjct: 345 NSC-PADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKGVM------PNAITYTTVIDAYG 397

Query: 407 TMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIE 465
              K + A+K+F  M++    P+  TY  + SL G  +   E   M              
Sbjct: 398 KAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKMLC------------ 445

Query: 466 MDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEA 522
            DM  N    +  +   +L   G +GM + + + F + K+    P   T+NT++ +    
Sbjct: 446 -DMKSNGCSPNRATWNTMLALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRC 504

Query: 523 QESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTY 582
                A +++ +M   G      TYN +++  +    ++S   ++S M   GF P   +Y
Sbjct: 505 GSEVDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSY 564

Query: 583 TALIKILLDYGDF-----------------------------------DEALNLLDLVSL 607
           + +++     G++                                     +     L   
Sbjct: 565 SLMLQCYAKGGNYLGIERIENRIKEGQIFPSWMLLRTLLLANFKCRALAGSERAFTLFKK 624

Query: 608 EGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNS 667
            G   D++++N++L         D  E I+E + ++ + PD  T + +   YV  G    
Sbjct: 625 HGYKPDMVIFNSMLSIFTRNNMYDQAEGILESIREDGLSPDLVTYNSLMDMYVRRGECWK 684

Query: 668 AMEALQVLSMRML 680
           A E L+ L    L
Sbjct: 685 AEEILKTLEKSQL 697



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 63/323 (19%), Positives = 128/323 (39%), Gaps = 26/323 (8%)

Query: 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
           R +F+ +I A GR  +   A ++  +M   G      TY+  + A+      R+G  V+ 
Sbjct: 491 RDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVIS 550

Query: 353 IMQQNNLKPQDSTIATLSVEC----SKALELDLAEALLDQISRCTNPKPFSAFLAA---C 405
            M+    KP +++  +L ++C       L ++  E  + +     +       L A   C
Sbjct: 551 DMKSKGFKPTETSY-SLMLQCYAKGGNYLGIERIENRIKEGQIFPSWMLLRTLLLANFKC 609

Query: 406 DTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDS---AKRIN 462
             +   ERA  +F K     +PD+  +  + S+F          NM+ Q +    + R +
Sbjct: 610 RALAGSERAFTLFKK--HGYKPDMVIFNSMLSIF-------TRNNMYDQAEGILESIRED 660

Query: 463 AIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEA 522
            +  D+   N      S+ ++    G      E+++    S+      +YNTV+      
Sbjct: 661 GLSPDLVTYN------SLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCRR 714

Query: 523 QESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTY 582
                A+ +  +M   GI P   TYN  +   + +  F     ++  M ++   P  +T+
Sbjct: 715 GLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGMFAEIEDVIECMAKNDCRPNELTF 774

Query: 583 TALIKILLDYGDFDEALNLLDLV 605
             ++      G + EA++ +  +
Sbjct: 775 KMVVDGYCRAGKYSEAMDFVSKI 797


>gi|58013026|gb|AAW62966.1| chloroplast embryo-defective 1270 [Arabidopsis thaliana]
          Length = 1429

 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 103/459 (22%), Positives = 178/459 (38%), Gaps = 83/459 (18%)

Query: 170 KLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFS 229
           K+ S+       D++D+R+V      Y  ++K        S   E W+           +
Sbjct: 133 KILSLKSNQFVADILDARLVQMTPTDYCFVVK--------SVGQESWQR----------A 174

Query: 230 LRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVM 289
           L  F W      +L+  +     MVA A++G L       GR     L + I   A P +
Sbjct: 175 LEVFEW-----LNLRHWHSPNARMVA-AILGVL-------GRWNQESLAVEIFTRAEPTV 221

Query: 290 KVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGM- 348
                 ++ ++    R+     A++L+  M+  G  P   +++  I A +   GL   + 
Sbjct: 222 GDRVQVYNAMMGVYSRSGKFSKAQELVDAMRQRGCVPDLISFNTLINARLKSGGLTPNLA 281

Query: 349 -EVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDT 407
            E+L +++ + L+P   T  TL   CS+   LD                           
Sbjct: 282 VELLDMVRNSGLRPDAITYNTLLSACSRDSNLD--------------------------- 314

Query: 408 MDKPERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM 466
                 A+K+F  M   + +PD+ TY  + S++G      E   +F             M
Sbjct: 315 -----GAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEAERLF-------------M 356

Query: 467 DMARNNIQHSHISMKNLLKALGAE---GMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQ 523
           ++         ++  +LL A   E     ++E+ Q            TYNT++H   +  
Sbjct: 357 ELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQG 416

Query: 524 ESHRAMEIFKQMKT-CGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTY 582
           +   A++++K MK   G  P+A TY ++ID          A+AL+S M+  G  P   TY
Sbjct: 417 QLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAALMSEMLDVGIKPTLQTY 476

Query: 583 TALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTIL 621
           +ALI      G  +EA +    +   G   D L Y+ +L
Sbjct: 477 SALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVML 515



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 69/328 (21%), Positives = 135/328 (41%), Gaps = 41/328 (12%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           W+++ +I   GR   +  AE+L ++++  G  P + TY+  + A   +R      EV + 
Sbjct: 333 WTYNAMISVYGRCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQ 392

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFS-AFLAACDTMDKPE 412
           MQ+      + T  T+     K  +LDLA  L   +   +   P +  +    D++ K  
Sbjct: 393 MQKMGFGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKAN 452

Query: 413 RAIKIFAKMRQKL----RPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
           R ++  A M + L    +P ++TY  L   +       E  + FS              M
Sbjct: 453 RTVEAAALMSEMLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSC-------------M 499

Query: 469 ARNNIQHSHISMKNLLKAL-------GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVE 521
            R+  +  +++   +L  L        A G+ R++I    D  TP  T  Y  ++  L++
Sbjct: 500 LRSGTKPDNLAYSVMLDVLLRGNETRKAWGLYRDMIS---DGHTPSYT-LYELMILGLMK 555

Query: 522 AQESHRAMEIFKQMKT-CGIPPNAATYNIMIDCCSII---RCFKSASALVSMMVRDGFYP 577
              S    +  + M+  CG+ P        ++  S++    CF  A+  + + + +G+  
Sbjct: 556 ENRSDDIQKTIRDMEELCGMNP--------LEISSVLVKGECFDLAARQLKVAITNGYEL 607

Query: 578 QTMTYTALIKILLDYGDFDEALNLLDLV 605
           +  T  +++      G   EA  LL+ +
Sbjct: 608 ENDTLLSILGSYSSSGRHSEAFELLEFL 635



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/278 (22%), Positives = 114/278 (41%), Gaps = 20/278 (7%)

Query: 398 FSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVD 456
           ++A +       K  +A ++   MRQ+   PD+ ++  L      +NA  + G +   + 
Sbjct: 228 YNAMMGVYSRSGKFSKAQELVDAMRQRGCVPDLISFNTL------INARLKSGGLTPNL- 280

Query: 457 SAKRINAIEM-DMARNN-IQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---T 511
                 A+E+ DM RN+ ++   I+   LL A   +  +   ++ F D +     P   T
Sbjct: 281 ------AVELLDMVRNSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWT 334

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           YN ++        +  A  +F +++  G  P+A TYN ++   +  R  +    +   M 
Sbjct: 335 YNAMISVYGRCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQ 394

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLL-DLVSLEGIPHDVLLYNTILKKACEKGRI 630
           + GF    MTY  +I +    G  D AL L  D+  L G   D + Y  ++    +  R 
Sbjct: 395 KMGFGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRT 454

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSA 668
                ++ +M    ++P   T   +  GY   G    A
Sbjct: 455 VEAAALMSEMLDVGIKPTLQTYSALICGYAKAGKREEA 492



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 66/156 (42%), Gaps = 3/156 (1%)

Query: 515 VLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDG 574
           +L  L    +   A+EIF + +   +      YN M+   S    F  A  LV  M + G
Sbjct: 197 ILGVLGRWNQESLAVEIFTRAEPT-VGDRVQVYNAMMGVYSRSGKFSKAQELVDAMRQRG 255

Query: 575 FYPQTMTYTALIKILLDYGDFDE--ALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDV 632
             P  +++  LI   L  G      A+ LLD+V   G+  D + YNT+L        +D 
Sbjct: 256 CVPDLISFNTLINARLKSGGLTPNLAVELLDMVRNSGLRPDAITYNTLLSACSRDSNLDG 315

Query: 633 IEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSA 668
              + E M  ++ QPD  T + + S Y  CG    A
Sbjct: 316 AVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEA 351



 Score = 57.0 bits (136), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 79/165 (47%), Gaps = 3/165 (1%)

Query: 512  YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
            +N++L      ++  + +++++++K  G+ P+  TYN +I      R  +    L+  M 
Sbjct: 930  WNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGYLLMQQMR 989

Query: 572  RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
              G  P+  TY +LI         ++A  L + +  +G+  D   Y+T++K + + G   
Sbjct: 990  NLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDS 1049

Query: 632  VIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
              E +++ M    ++P  +T H +   Y + G   +  EA +VLS
Sbjct: 1050 KAEKLLQMMKNAGIEPTLATMHLLMVSYSSSG---NPQEAEKVLS 1091



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 52/265 (19%), Positives = 109/265 (41%), Gaps = 19/265 (7%)

Query: 412 ERAIKIFA--KMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDS--AKRINAIEMD 467
           +RA+++F    +R    P+ R    +  + G  N       +F++ +     R+      
Sbjct: 172 QRALEVFEWLNLRHWHSPNARMVAAILGVLGRWNQESLAVEIFTRAEPTVGDRVQVYNAM 231

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQ--ES 525
           M   +        + L+ A+   G + +LI             ++NT++++ +++     
Sbjct: 232 MGVYSRSGKFSKAQELVDAMRQRGCVPDLI-------------SFNTLINARLKSGGLTP 278

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
           + A+E+   ++  G+ P+A TYN ++  CS       A  +   M      P   TY A+
Sbjct: 279 NLAVELLDMVRNSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAM 338

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           I +    G   EA  L   + L+G   D + YN++L     +   + ++ + +QM +   
Sbjct: 339 ISVYGRCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGF 398

Query: 646 QPDPSTCHFVFSGYVNCGFHNSAME 670
             D  T + +   Y   G  + A++
Sbjct: 399 GKDEMTYNTIIHMYGKQGQLDLALQ 423



 Score = 53.1 bits (126), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 76/389 (19%), Positives = 147/389 (37%), Gaps = 30/389 (7%)

Query: 296  FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
            ++D+I A G+ +    AE ++  ++  G  P   T++  + A            +   M 
Sbjct: 755  YTDIIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTMM 814

Query: 356  QNNLKPQDSTIATLSVECSKALELD--------LAEALLD---QISRCTNPKPFSAFLAA 404
            ++   P   +I  L      AL +D        + E L D   +IS+ +      AF  A
Sbjct: 815  RDGPSPTVESINILL----HALCVDGRLEELYVVVEELQDMGFKISKSSILLMLDAFARA 870

Query: 405  CDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINA 463
             +  +      KI++ M+     P IR Y ++  L        +   M S+++ A     
Sbjct: 871  GNIFE----VKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEAN---- 922

Query: 464  IEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQ 523
             ++++A  N      SM  +  A+       ++ Q   ++       TYNT++      +
Sbjct: 923  FKVELAIWN------SMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDR 976

Query: 524  ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
                   + +QM+  G+ P   TY  +I      +C + A  L   ++  G       Y 
Sbjct: 977  RPEEGYLLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYH 1036

Query: 584  ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
             ++KI  D G   +A  LL ++   GI   +   + ++      G     E ++  +   
Sbjct: 1037 TMMKISRDSGSDSKAEKLLQMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKDT 1096

Query: 644  KVQPDPSTCHFVFSGYVNCGFHNSAMEAL 672
            +V+        V   Y+    +NS +E L
Sbjct: 1097 EVELTTLPYSSVIDAYLRSKDYNSGIERL 1125



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 60/290 (20%), Positives = 119/290 (41%), Gaps = 24/290 (8%)

Query: 394 NPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFS 453
           N +  +A L      ++   A++IF +    +   ++ Y  +  +       Y     FS
Sbjct: 190 NARMVAAILGVLGRWNQESLAVEIFTRAEPTVGDRVQVYNAMMGV-------YSRSGKFS 242

Query: 454 Q----VDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGT 509
           +    VD+ ++   +   ++ N + ++ +    L   L  E     L+    +S      
Sbjct: 243 KAQELVDAMRQRGCVPDLISFNTLINARLKSGGLTPNLAVE-----LLDMVRNSGLRPDA 297

Query: 510 PTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASA--LV 567
            TYNT+L +         A+++F+ M+     P+  TYN MI      RC  +A A  L 
Sbjct: 298 ITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYG--RCGLAAEAERLF 355

Query: 568 SMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEK 627
             +   GF+P  +TY +L+       + ++   +   +   G   D + YNTI+    ++
Sbjct: 356 MELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQ 415

Query: 628 GRIDVIEFIIEQMHQ-NKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
           G++D+   + + M   +   PD  T   +     + G  N  +EA  ++S
Sbjct: 416 GQLDLALQLYKDMKGLSGRNPDAITYTVLID---SLGKANRTVEAAALMS 462



 Score = 39.7 bits (91), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 100/566 (17%), Positives = 195/566 (34%), Gaps = 82/566 (14%)

Query: 156 PILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEI 215
           P L  YN+ +    +      A      ++ +    + VTY  LL     ++N   V E+
Sbjct: 330 PDLWTYNAMISVYGRCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEV 389

Query: 216 WEDYIK-HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALA--------------MMG 260
           ++   K  +     +    +  + +   L  A +  + M  L+               +G
Sbjct: 390 YQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLG 449

Query: 261 KLYINRTSE-GRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQM 319
           K   NRT E   L S  LD+ I     P ++    ++S +I    +      AE     M
Sbjct: 450 K--ANRTVEAAALMSEMLDVGIK----PTLQ----TYSALICGYAKAGKREEAEDTFSCM 499

Query: 320 QSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKA-LE 378
              G +P +  Y   +  ++     R    + + M  +   P  +    + +   K    
Sbjct: 500 LRSGTKPDNLAYSVMLDVLLRGNETRKAWGLYRDMISDGHTPSYTLYELMILGLMKENRS 559

Query: 379 LDLAEALLDQISRCT-NPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFS 437
            D+ + + D    C  NP   S+ L   +  D   R +K+      +L  D      L S
Sbjct: 560 DDIQKTIRDMEELCGMNPLEISSVLVKGECFDLAARQLKVAITNGYELENDT-----LLS 614

Query: 438 LFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELI 497
           + G+ ++       F  ++  K   +    +    +   H  + NL  AL          
Sbjct: 615 ILGSYSSSGRHSEAFELLEFLKEHASGSKRLITEALIVLHCKVNNLSAALD--------- 665

Query: 498 QYFCDSKTP---LGTPT-YNTVLHSLVEAQESHRAMEIFKQMK---------TC------ 538
           +YF D        G+ T Y T+LH  V  +    A ++F  ++          C      
Sbjct: 666 EYFADPCVHGWCFGSSTMYETLLHCCVANEHYAEASQVFSDLRLSGCEASESVCKSMVVV 725

Query: 539 ----GIPPNA-----------------ATYNIMIDCCSIIRCFKSASALVSMMVRDGFYP 577
               G P  A                   Y  +I+     + ++ A ++V  + + G  P
Sbjct: 726 YCKLGFPETAHQVVNQAETKGFHFACSPMYTDIIEAYGKQKLWQKAESVVGNLRQSGRTP 785

Query: 578 QTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFII 637
              T+ +L+      G ++ A  + + +  +G    V   N +L   C  GR++ +  ++
Sbjct: 786 DLKTWNSLMSAYAQCGCYERARAIFNTMMRDGPSPTVESINILLHALCVDGRLEELYVVV 845

Query: 638 EQMHQNKVQPDPSTCHFVFSGYVNCG 663
           E++     +   S+   +   +   G
Sbjct: 846 EELQDMGFKISKSSILLMLDAFARAG 871


>gi|451798815|gb|AGF69111.1| PPR [Raphanus sativus]
          Length = 479

 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 81/368 (22%), Positives = 154/368 (41%), Gaps = 32/368 (8%)

Query: 325 QPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEA 384
           +P+  T+   +  +  +  +   + +L  M ++ L+P   T  T+     K  +   A  
Sbjct: 78  KPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALN 137

Query: 385 LLDQISRCTNPKP----FSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLF 439
           LL ++   ++ KP    +SA +       +   A  +F +M+ K + PDI TY  + + F
Sbjct: 138 LLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGF 197

Query: 440 GNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMI---REL 496
            + +  + E     Q            +M    I    ++   L+ AL  EG +   ++L
Sbjct: 198 CS-SGKWSEAQRLLQ------------EMLVRKISPDVVTFSGLINALVKEGDLNSAQDL 244

Query: 497 IQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTC-----------GIPPNAA 545
           +Q    S       T NT+L  L ++ +   A+E+FK M+             G+ P+  
Sbjct: 245 LQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQ 304

Query: 546 TYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLV 605
           TYNI+I        F  A  L   M   G  P T+TY+++I  L      DEA  + D +
Sbjct: 305 TYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSM 364

Query: 606 SLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFH 665
             +    +++ +NT++   C+ G +D    +  +M +  +  +  T   +  G+   G  
Sbjct: 365 GSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAITYITLIRGFRKVGNI 424

Query: 666 NSAMEALQ 673
           N +++  Q
Sbjct: 425 NGSLDIFQ 432



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 74/303 (24%), Positives = 134/303 (44%), Gaps = 29/303 (9%)

Query: 398 FSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDS 457
           F+  L      D+   A+ +F +M    +P++ T+  L      +N    EG +   V  
Sbjct: 53  FNTLLHGLCVEDRVSEALDLFHQM---CKPNVVTFTTL------MNGLCREGRVVEAVAL 103

Query: 458 AKRINAIEMDMARNNIQHSHI--SMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTV 515
             R+  +E  +  N I +  I   M  +   + A  ++R++ +    S        Y+ +
Sbjct: 104 LDRM--VEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEL---SHIKPDVVIYSAI 158

Query: 516 LHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC-CSIIRCFKSASALVSMMVRDG 574
           +  L +      A  +F +M+  GI P+  TY+ MI+  CS  +  ++   L  M+VR  
Sbjct: 159 IDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRK- 217

Query: 575 FYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI-DVI 633
             P  +T++ LI  L+  GD + A +LL  +   G+  +V+  NT+L   C+ G++ D +
Sbjct: 218 ISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDAL 277

Query: 634 EFI---------IEQMHQ-NKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEE 683
           E           I+  H  N V+PD  T + + SG +N G    A E  + +  R +  +
Sbjct: 278 EMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPD 337

Query: 684 VST 686
             T
Sbjct: 338 TVT 340



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 69/313 (22%), Positives = 126/313 (40%), Gaps = 37/313 (11%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A+ L ++MQ  G+ P   TY   I    S         +L+ M    + P   T + L  
Sbjct: 171 AQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLIN 230

Query: 372 ECSKALELDLAEALLDQI---SRCTNPKPFSAFL-AACDTMDKPERAIKIFAKMRQKL-- 425
              K  +L+ A+ LL ++     C N    +  L   CD+  K + A+++F  M++ +  
Sbjct: 231 ALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDS-GKLKDALEMFKAMQKSMMD 289

Query: 426 ----------RPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM--DMARNNI 473
                      PD++TY +L S                 ++  K + A E+  +M    I
Sbjct: 290 IDATHAFNGVEPDVQTYNILIS---------------GLINEGKFLEAEELYEEMPHRGI 334

Query: 474 QHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAME 530
               ++  +++  L  +  + E  Q F    +   +P   T+NT++    +A      +E
Sbjct: 335 VPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLE 394

Query: 531 IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590
           +F +M   GI  NA TY  +I     +     +  +   M+  G YP T+T   ++  L 
Sbjct: 395 LFCEMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQEMISSGVYPDTITIRNMLTGLW 454

Query: 591 DYGDFDEALNLLD 603
              +   AL +L+
Sbjct: 455 SKEELKRALAMLE 467



 Score = 47.4 bits (111), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 79/388 (20%), Positives = 158/388 (40%), Gaps = 51/388 (13%)

Query: 111 RMMEEKEIGL--NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGAC 168
           RM+E+   GL  N   Y  ++  +CK G    A NL+  + E   I P + +Y++ +   
Sbjct: 106 RMVED---GLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGL 162

Query: 169 AKLHSMVHA-NLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWED-YIKHYSLS 226
            K      A NL +++ D + +  + VTY+ ++         S    + ++  ++  S  
Sbjct: 163 WKDGRHTDAQNLFIEMQD-KGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPD 221

Query: 227 IFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYI-NRTSEGRLRSSRLDIPIPLNA 285
           + +    + +  +  DL SA + LQ M++  +   +   N   +G   S +L      +A
Sbjct: 222 VVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLK-----DA 276

Query: 286 LPVMKVLRWSFSDV--IHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRG 343
           L + K ++ S  D+   HA                    G++P   TY+  I  ++++  
Sbjct: 277 LEMFKAMQKSMMDIDATHAFN------------------GVEPDVQTYNILISGLINEGK 318

Query: 344 LRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI-SRCTNPK--PFSA 400
                E+ + M    + P   T +++     K   LD A  + D + S+  +P    F+ 
Sbjct: 319 FLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNT 378

Query: 401 FLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAK 459
            +         +  +++F +M R+ +  +  TY  L   F  V      GN+   +D   
Sbjct: 379 LITGYCKAGMVDDGLELFCEMGRRGIVANAITYITLIRGFRKV------GNINGSLD--- 429

Query: 460 RINAIEMDMARNNIQHSHISMKNLLKAL 487
               I  +M  + +    I+++N+L  L
Sbjct: 430 ----IFQEMISSGVYPDTITIRNMLTGL 453



 Score = 45.1 bits (105), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 67/137 (48%), Gaps = 10/137 (7%)

Query: 540 IPPNAATYNIMIDC-CSIIRCFKSASALVSM--MVRDGFYPQTMTYTALIKILLDYGDFD 596
           IP +  ++NI+I C CS   C K   AL +   + + GF+P  +T+  L+  L       
Sbjct: 11  IPCDIYSFNILIKCFCS---CSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVS 67

Query: 597 EALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVF 656
           EAL+L      +    +V+ + T++   C +GR+     ++++M ++ +QP+  T   + 
Sbjct: 68  EALDLFH----QMCKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIV 123

Query: 657 SGYVNCGFHNSAMEALQ 673
            G    G   SA+  L+
Sbjct: 124 DGMCKMGDTVSALNLLR 140


>gi|262316879|emb|CAZ44328.1| restoring pentatricopeptide repeat protein homologue [Raphanus
           sativus]
          Length = 681

 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 125/605 (20%), Positives = 231/605 (38%), Gaps = 69/605 (11%)

Query: 89  DFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFL 148
           DF  ++    R   P  V+  ++ ME K+I  +   + ++++  C    L  A +    +
Sbjct: 79  DFNKLMGVVVRMERPDLVISLYQKMERKQIPCDVYSFNILIKCFCSCSKLPFALSTFGKI 138

Query: 149 GERYGIYPILPVYNSFL-GACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLK-LAVWQ 206
             + G  P +  +++ L G C +       +  LDL   +M   N VT+T L+  L    
Sbjct: 139 -TKLGFQPDVVTFSTLLHGLCVE----DRVSEALDLF-HQMCRPNVVTFTTLMNGLCREG 192

Query: 207 KNLSAV---HEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLY 263
           + + AV     + ED ++   ++  ++   V    ++ D  SA   L+ M  ++ +    
Sbjct: 193 RVVEAVALLDRMVEDGLQPNQITYGTI---VDGMCKIGDTVSALNLLRKMEEMSHI---- 245

Query: 264 INRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLG 323
                       + ++ I              +S +I    +      A  L  +MQ  G
Sbjct: 246 ------------KPNVVI--------------YSAIIDGLWKDGRHSDAHNLYTEMQEKG 279

Query: 324 LQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAE 383
           + P   TY+  I    S         +L+ M +  + P   T + L     K  +   AE
Sbjct: 280 IFPDLFTYNCMIDGFCSSGRWSEAQRLLQEMLERKINPNVVTYSALINAYVKERKFFEAE 339

Query: 384 ALLDQI---SRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLF 439
            L D++       N   +++ +      ++ + A  +F  M  K   PD+ T+  L   +
Sbjct: 340 ELYDEMLPRGIIPNTITYNSMIDGFCKQNRLDAAEHMFYVMATKGCSPDVFTFNTLIDGY 399

Query: 440 GNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQY 499
                  +   +  ++        +      N + H    + +L  AL       +L Q 
Sbjct: 400 CGAKRIDDGTELLHEM---TETGLVADTTTYNTLIHGFCLVGDLNAAL-------DLSQQ 449

Query: 500 FCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTC-----------GIPPNAATYN 548
              S       T NT+L  L +  +   A+E+FK M+             G+ P+  TYN
Sbjct: 450 MISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASRPFNGVEPDVQTYN 509

Query: 549 IMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLE 608
           I+I        F  A  L   M   G  P T+TY+++I  L      DEA  + D +  +
Sbjct: 510 ILISGLINEGKFLEAEELYKEMPHRGIVPNTITYSSMINGLCKQSRLDEATQMFDSMGSK 569

Query: 609 GIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSA 668
               DV+ +NT++   C+ GR+D    +  +M +  +  D  T   +  G+   G  N A
Sbjct: 570 SFSPDVVTFNTLVSGYCKAGRVDDGLELFCEMGRRGIVADAITYITLIHGFRKVGNINGA 629

Query: 669 MEALQ 673
           ++  Q
Sbjct: 630 LDIFQ 634



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 124/292 (42%), Gaps = 18/292 (6%)

Query: 398 FSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDS 457
           FS  L      D+   A+ +F +M    RP++ T+  L      +N    EG +   V  
Sbjct: 150 FSTLLHGLCVEDRVSEALDLFHQM---CRPNVVTFTTL------MNGLCREGRVVEAVAL 200

Query: 458 AKRINAIEMDMARNNIQHSHI--SMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTV 515
             R+  +E  +  N I +  I   M  +   + A  ++R++ +    S        Y+ +
Sbjct: 201 LDRM--VEDGLQPNQITYGTIVDGMCKIGDTVSALNLLRKMEEM---SHIKPNVVIYSAI 255

Query: 516 LHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC-CSIIRCFKSASALVSMMVRDG 574
           +  L +      A  ++ +M+  GI P+  TYN MID  CS  R +  A  L+  M+   
Sbjct: 256 IDGLWKDGRHSDAHNLYTEMQEKGIFPDLFTYNCMIDGFCSSGR-WSEAQRLLQEMLERK 314

Query: 575 FYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIE 634
             P  +TY+ALI   +    F EA  L D +   GI  + + YN+++   C++ R+D  E
Sbjct: 315 INPNVVTYSALINAYVKERKFFEAEELYDEMLPRGIIPNTITYNSMIDGFCKQNRLDAAE 374

Query: 635 FIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
            +   M      PD  T + +  GY      +   E L  ++   L  + +T
Sbjct: 375 HMFYVMATKGCSPDVFTFNTLIDGYCGAKRIDDGTELLHEMTETGLVADTTT 426



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 111/560 (19%), Positives = 211/560 (37%), Gaps = 79/560 (14%)

Query: 54  ATQMQIVDALCR-GERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRM 112
            T   +++ LCR G    A  LL  +           +  I++   +  D +  +   R 
Sbjct: 179 VTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKIGDTVSALNLLRK 238

Query: 113 MEE-KEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKL 171
           MEE   I  N   Y  ++  L K G   +A NL   + E+ GI+P L  YN  +      
Sbjct: 239 MEEMSHIKPNVVIYSAIIDGLWKDGRHSDAHNLYTEMQEK-GIFPDLFTYNCMIDGFCSS 297

Query: 172 HSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSL-SIFSL 230
                A   L  M  R +  N VTY+ L+   V ++      E++++ +    + +  + 
Sbjct: 298 GRWSEAQRLLQEMLERKINPNVVTYSALINAYVKERKFFEAEELYDEMLPRGIIPNTITY 357

Query: 231 RKFVWSFTRLRDLKSAYETLQHMVALAMMGKLY-INRTSEGRLRSSRLDIPIP-LNALPV 288
              +  F +   L +A      M        ++  N   +G   + R+D     L+ +  
Sbjct: 358 NSMIDGFCKQNRLDAAEHMFYVMATKGCSPDVFTFNTLIDGYCGAKRIDDGTELLHEMTE 417

Query: 289 MKVL--RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRN 346
             ++    +++ +IH      +   A  L  QM S G+ P   T +  +  +  +  L++
Sbjct: 418 TGLVADTTTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKD 477

Query: 347 GMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACD 406
            +E+ K MQ++                   ++LD +             +PF+       
Sbjct: 478 ALEMFKAMQKSK------------------MDLDAS-------------RPFNG------ 500

Query: 407 TMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM 466
                             + PD++TY +L S  G +N    EG      +  K       
Sbjct: 501 ------------------VEPDVQTYNILIS--GLIN----EGKFLEAEELYK------- 529

Query: 467 DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQ 523
           +M    I  + I+  +++  L  +  + E  Q F    +   +P   T+NT++    +A 
Sbjct: 530 EMPHRGIVPNTITYSSMINGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLVSGYCKAG 589

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
                +E+F +M   GI  +A TY  +I     +     A  +   M+  G YP T+T  
Sbjct: 590 RVDDGLELFCEMGRRGIVADAITYITLIHGFRKVGNINGALDIFQEMISSGVYPDTITIR 649

Query: 584 ALIKILLDYGDFDEALNLLD 603
           +++ +L    +   A+ +L+
Sbjct: 650 SMLTVLWSKEELKRAVAMLE 669



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 81/176 (46%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TYN ++     +     A  + ++M    I PN  TY+ +I+     R F  A  L   M
Sbjct: 286 TYNCMIDGFCSSGRWSEAQRLLQEMLERKINPNVVTYSALINAYVKERKFFEAEELYDEM 345

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           +  G  P T+TY ++I         D A ++  +++ +G   DV  +NT++   C   RI
Sbjct: 346 LPRGIIPNTITYNSMIDGFCKQNRLDAAEHMFYVMATKGCSPDVFTFNTLIDGYCGAKRI 405

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           D    ++ +M +  +  D +T + +  G+   G  N+A++  Q +    +C ++ T
Sbjct: 406 DDGTELLHEMTETGLVADTTTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVT 461


>gi|255566084|ref|XP_002524030.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536757|gb|EEF38398.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1016

 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 158/761 (20%), Positives = 281/761 (36%), Gaps = 170/761 (22%)

Query: 10  FQLIADSFCKSKFHKHERRNVANKLELSRTLTTTM---GLNEESISKATQMQIVDALC-R 65
           F  + D +CK           A ++ L+  L   M   GL  + +S  T   +++  C R
Sbjct: 150 FNTLIDGYCK-----------AGEMSLALDLVERMRKEGLLSDIVSYNT---LINGFCKR 195

Query: 66  GERSRASHLLLNLGHAHHSLGADD--FFHILNYCARSPDPLFVMETWRMMEEKEIGLNNK 123
           GE  +A  LL  +     S G  D  FF+I +               R+ ++  + L   
Sbjct: 196 GEYDKAKSLLHEISE---SRGVKDSVFFNIDD---------------RIKKDDNLNLEAD 237

Query: 124 --CYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCL 181
              Y  ++   CK   LEEA  L Y      G  P +  Y+S +    K   +  A   L
Sbjct: 238 LITYTTIISTYCKQHGLEEARAL-YEEMIINGFLPDVVTYSSIVNGLCKDGRLSEAQELL 296

Query: 182 DLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLR 241
             M    V  N V YT L+       +L      WE +     L +  +           
Sbjct: 297 REMKKMGVDPNHVAYTTLID------SLFKAGSAWEAFACQSQLVVRGM----------- 339

Query: 242 DLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIH 301
                  TL  ++   ++  L+  ++S+ +           LN +P       +++ +I 
Sbjct: 340 -------TLDLVMCTTLVDGLF--KSSKPKEAEDMFRALSKLNLIPN----SITYTALID 386

Query: 302 ACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKP 361
              +  +    E L+ +M+   + P+  TY   I        L   + V+K M   N+ P
Sbjct: 387 GYCKVGDMERVESLLQEMEEKHINPNVITYSSIINGYTKKGILDEAINVMKKMLDQNIIP 446

Query: 362 QDSTIATLSVECSKALE-----------------------------------LDLAEALL 386
                A L     KA +                                   +D AE LL
Sbjct: 447 NAYVYAILIDGYCKAGKQEIATDLYNEMKLSGLKVNNVLFDVLVNNLKRGKRMDEAEELL 506

Query: 387 DQISR---CTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRP-DIRTYELLFSLFGNV 442
             ++      +   +++ +       K   A+ +  +M +K  P D+ TY +L +     
Sbjct: 507 KDVTSRGLLLDHVNYTSLMDGFFKAGKESAALNMVEEMTEKSIPFDVVTYNVLINGLLE- 565

Query: 443 NAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCD 502
           +  YE  +++S +        IEM +A N   ++      ++KA   +G +   ++ + +
Sbjct: 566 HGKYEAKSVYSGM--------IEMGLAPNQATYNI-----MIKAYCKQGELDNALELWNE 612

Query: 503 SKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSI--- 556
            K+    P   T NT++  L EA E  +AM +  +M   GI PN   + ++++  S    
Sbjct: 613 MKSHKIMPSSITCNTLVVGLSEAGEIEKAMNVLNEMSVMGIHPNLVIHRVLLNASSKSGK 672

Query: 557 --------------------------------IRCFKSASALVSMMVRDGFYPQTMTYTA 584
                                           +R  K A++++  M+RDGF   T+TY A
Sbjct: 673 ANAVLQMHEQLVDMGLKINQEAYNNLIVVFCRLRMTKKATSVLKYMIRDGFVADTVTYNA 732

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
           LI+   +     +AL     +  EG+  +++ YN +L      G +   + + ++M +N 
Sbjct: 733 LIRGYCESSHVKKALATYTQMLNEGVSPNIVTYNLLLGGLLGAGLMAERDELFDKMKENG 792

Query: 645 VQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVS 685
           + PD ST   + SGY   G            S+R+ CE V+
Sbjct: 793 LNPDASTYDTLISGYGKIGNKKE--------SIRLYCEMVA 825



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 114/545 (20%), Positives = 226/545 (41%), Gaps = 39/545 (7%)

Query: 99  RSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPIL 158
           +S  P    + +R + +  +  N+  Y  ++   CK G +E   +L+  + E++ I P +
Sbjct: 355 KSSKPKEAEDMFRALSKLNLIPNSITYTALIDGYCKVGDMERVESLLQEMEEKH-INPNV 413

Query: 159 PVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWED 218
             Y+S +    K   +  A   +++M  +M+ +N +    +  + +     +   EI  D
Sbjct: 414 ITYSSIINGYTKKGILDEA---INVM-KKMLDQNIIPNAYVYAILIDGYCKAGKQEIATD 469

Query: 219 YIKHYSLSIFSLRKFVW-----SFTRLRDLKSAYETLQHMVALAMMGKLYINRTS--EGR 271
                 LS   +   ++     +  R + +  A E L+ + +  ++   ++N TS  +G 
Sbjct: 470 LYNEMKLSGLKVNNVLFDVLVNNLKRGKRMDEAEELLKDVTSRGLLLD-HVNYTSLMDGF 528

Query: 272 LRSSRLDIPIPLNALPVMKVLRWSFSDVIHAC---GRTQNSGL-AEQLMLQMQSLGLQPS 327
            ++ +      LN +  M      F  V +     G  ++    A+ +   M  +GL P+
Sbjct: 529 FKAGKE--SAALNMVEEMTEKSIPFDVVTYNVLINGLLEHGKYEAKSVYSGMIEMGLAPN 586

Query: 328 SHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLD 387
             TY+  I+A      L N +E+   M+ + + P   T  TL V  S+A E++ A  +L+
Sbjct: 587 QATYNIMIKAYCKQGELDNALELWNEMKSHKIMPSSITCNTLVVGLSEAGEIEKAMNVLN 646

Query: 388 QISRCT---NPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVN 443
           ++S      N       L A     K    +++  ++    L+ +   Y  L  +F    
Sbjct: 647 EMSVMGIHPNLVIHRVLLNASSKSGKANAVLQMHEQLVDMGLKINQEAYNNLIVVF---- 702

Query: 444 APYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDS 503
                     ++   K+  ++   M R+      ++   L++       +++ +  +   
Sbjct: 703 ---------CRLRMTKKATSVLKYMIRDGFVADTVTYNALIRGYCESSHVKKALATYTQM 753

Query: 504 KTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCF 560
                +P   TYN +L  L+ A       E+F +MK  G+ P+A+TY+ +I     I   
Sbjct: 754 LNEGVSPNIVTYNLLLGGLLGAGLMAERDELFDKMKENGLNPDASTYDTLISGYGKIGNK 813

Query: 561 KSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTI 620
           K +  L   MV  GF P+T TY  LI      G  D+A  LL+ + + G+P     Y+ +
Sbjct: 814 KESIRLYCEMVAQGFVPKTSTYNVLISDFAKVGKMDQARELLNEMQVRGVPPSSSTYDIL 873

Query: 621 LKKAC 625
           +   C
Sbjct: 874 ICGWC 878



 Score = 45.4 bits (106), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 43/183 (23%), Positives = 83/183 (45%), Gaps = 20/183 (10%)

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVL-----HSLVEAQES 525
           N + H+   M NL+ AL    ++R +          + T TYNTV+     H LV   ++
Sbjct: 49  NVLVHAWCKMGNLILALD---LLRNV-------DVEVDTVTYNTVIWGFCQHGLV--NQA 96

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
              + I  +  TC    +  T NI++     I   K    ++  +V  G     + +  L
Sbjct: 97  FGFLSIMVKKDTC---FDTITCNILVKGFCRIGLAKYGERIMDNLVSGGTCKDVIGFNTL 153

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           I      G+   AL+L++ +  EG+  D++ YNT++   C++G  D  + ++ ++ +++ 
Sbjct: 154 IDGYCKAGEMSLALDLVERMRKEGLLSDIVSYNTLINGFCKRGEYDKAKSLLHEISESRG 213

Query: 646 QPD 648
             D
Sbjct: 214 VKD 216



 Score = 44.3 bits (103), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 41/212 (19%), Positives = 93/212 (43%), Gaps = 6/212 (2%)

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCD---SKTPLGTPTYNTVLHSLVEAQE 524
           M ++NI  + +    L+    A G++ ++   + +   S  P    T+N ++H+  +   
Sbjct: 1   MRKHNIVPTLLLWNQLIYHFNAFGLVSQVCDIYTEMLCSAVPPNVYTHNVLVHAWCKMGN 60

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
              A+++ + +    +  +  TYN +I           A   +S+MV+      T+T   
Sbjct: 61  LILALDLLRNVD---VEVDTVTYNTVIWGFCQHGLVNQAFGFLSIMVKKDTCFDTITCNI 117

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
           L+K     G       ++D +   G   DV+ +NT++   C+ G + +   ++E+M +  
Sbjct: 118 LVKGFCRIGLAKYGERIMDNLVSGGTCKDVIGFNTLIDGYCKAGEMSLALDLVERMRKEG 177

Query: 645 VQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
           +  D  + + + +G+   G ++ A   L  +S
Sbjct: 178 LLSDIVSYNTLINGFCKRGEYDKAKSLLHEIS 209



 Score = 39.3 bits (90), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 31/176 (17%), Positives = 75/176 (42%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TY  ++    +  +  R   + ++M+   I PN  TY+ +I+  +       A  ++  M
Sbjct: 380 TYTALIDGYCKVGDMERVESLLQEMEEKHINPNVITYSSIINGYTKKGILDEAINVMKKM 439

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           +     P    Y  LI      G  + A +L + + L G+  + +L++ ++       R+
Sbjct: 440 LDQNIIPNAYVYAILIDGYCKAGKQEIATDLYNEMKLSGLKVNNVLFDVLVNNLKRGKRM 499

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           D  E +++ +    +  D      +  G+   G  ++A+  ++ ++ + +  +V T
Sbjct: 500 DEAEELLKDVTSRGLLLDHVNYTSLMDGFFKAGKESAALNMVEEMTEKSIPFDVVT 555


>gi|359488007|ref|XP_002263892.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Vitis vinifera]
          Length = 539

 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 102/494 (20%), Positives = 192/494 (38%), Gaps = 37/494 (7%)

Query: 209 LSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLY-INRT 267
           LS+ H +      H    IF   K + S  +++   +     + M +  +   +Y +   
Sbjct: 41  LSSFHRMLH---MHPPPPIFEFAKLLTSIAKMKHYSTVLSLSKKMDSFGIPPDVYTLTIV 97

Query: 268 SEGRLRSSRLDIPIPLNALPVMKVLRW-------SFSDVIHACGRTQNSGLAEQLMLQMQ 320
                  +R+D  + + A    K+L+        +F+ ++         G A  +  +M 
Sbjct: 98  INSFCHLNRVDFALSVLA----KILKLGHQPDTATFTTLVRGLCVVGKIGEALDVFDKMV 153

Query: 321 SLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELD 380
             G QP+  TY   +  +  DR L   + +   M    + P   T  +L        E  
Sbjct: 154 GEGFQPNVVTYGTLMNGLCKDRQLTEALNLFSEMIAKGISPDIFTYNSLIHALCNLCEWK 213

Query: 381 LAEALLDQISRCT---NPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLF 436
               LL+++ +     N    +  + A     K   A  +   M Q  + PD+ TY  L 
Sbjct: 214 HVTTLLNEMVKSKIMPNVVSLNIVVDALCKEGKVTEAHDVVDMMIQGGVEPDVVTYAALM 273

Query: 437 SLFGNVNAPYEEGNMF-SQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRE 495
                      +G+   S++D A ++   +M M RN    + +S   L+        I +
Sbjct: 274 -----------DGHCLRSEMDEAVKV--FDM-MVRNGCVCNVVSYNTLINGYCKIQRIDK 319

Query: 496 LIQYF---CDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID 552
            +  F   C  +    T TY+T++H L        A+ +F +M  CG  PN  TY+I++D
Sbjct: 320 AMYLFEEMCRQELIPNTMTYSTLIHGLCHVGRLQDAIALFNEMVACGQIPNLVTYSILLD 379

Query: 553 CCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPH 612
                     A AL+  +      P    Y   I  +   GD + A +L   ++  G+  
Sbjct: 380 YLCKNHRLAEAMALLKAIEGSNLDPDVQVYNIAIDGMCRAGDLEAARDLFSNLAPRGLQP 439

Query: 613 DVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEAL 672
           DV  +N +++  C++G +D    +  +M +N    +  T + +  G +     + A++ L
Sbjct: 440 DVWTHNIMIRGLCKRGLLDEASKLFREMDENGCLRNGCTYNTITQGLLQNNKTSRAIQLL 499

Query: 673 QVLSMRMLCEEVST 686
           + +  R    +VST
Sbjct: 500 EEMLARGFSADVST 513


>gi|242054943|ref|XP_002456617.1| hypothetical protein SORBIDRAFT_03g039460 [Sorghum bicolor]
 gi|241928592|gb|EES01737.1| hypothetical protein SORBIDRAFT_03g039460 [Sorghum bicolor]
          Length = 410

 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 79/366 (21%), Positives = 146/366 (39%), Gaps = 22/366 (6%)

Query: 299 VIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRN-GMEVLKIMQQN 357
           ++H C ++ +   A ++   M  LG+ P+  TY   I      RG R  G  ++  M++ 
Sbjct: 44  LVHGCCQSGDVAEARRVFDVMPRLGVTPNEVTYTALIHGYFV-RGQREMGFALVGEMRRG 102

Query: 358 NLKPQDSTIATLSVECSKALELDLAEALLDQI---SRCTNPKPFSAFLAACDTMDKPERA 414
            ++P   T   L  E  +  E   A  L D++       N   ++  +A      K + A
Sbjct: 103 GVEPNLYTYNCLVGEWCRTGEFKSARLLFDEMPLKGVVRNVVSYNILIAGLCRHGKLKDA 162

Query: 415 IKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNI 473
            ++F  MR++ + P + T+ LL   +G         + F+Q+ +A              +
Sbjct: 163 AQLFEAMRREGIHPSMVTFNLLIDGYGKAGKMSNALHFFNQMKAA-------------GL 209

Query: 474 QHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAME 530
           Q S ++   L+        I   I+ F D K     P   TY  ++ +  +  E  RA E
Sbjct: 210 QPSVVTYNELIGGFCRARDIAHAIRAFSDMKERRLAPTKVTYTILIGAFAKENEMDRAFE 269

Query: 531 IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590
           +  +M+  G+  +  +Y +++    +      A  L   M   G  P  + Y  +I    
Sbjct: 270 MLSEMEKAGLEVDVQSYGVLLHALCMEGKMMHARKLFQSMDSKGVKPNNVLYDMMIYGYG 329

Query: 591 DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650
             G   +AL L+  +   G+  +V  Y   ++  C +G+    E +I  M    +Q   S
Sbjct: 330 REGSSYKALRLIMEMRKSGLIPNVASYCLTIRLLCNEGKCQEAEALIGDMEDAGLQTSES 389

Query: 651 TCHFVF 656
            C  +F
Sbjct: 390 ICRVLF 395



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 86/403 (21%), Positives = 156/403 (38%), Gaps = 44/403 (10%)

Query: 335 IRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVE-CSKALELDLAEALLDQISR-- 391
           +R + +   +R+ + VL    ++     D    T  V  C ++ ++  A  + D + R  
Sbjct: 9   VRRLCAAAEVRSALAVLARGTKSGDAALDVAACTALVHGCCQSGDVAEARRVFDVMPRLG 68

Query: 392 -CTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEG 449
              N   ++A +       + E    +  +MR+  + P++ TY  L              
Sbjct: 69  VTPNEVTYTALIHGYFVRGQREMGFALVGEMRRGGVEPNLYTYNCLV------------- 115

Query: 450 NMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGT 509
             + +    K    +  +M    +  + +S   L+  L   G +++  Q F   +     
Sbjct: 116 GEWCRTGEFKSARLLFDEMPLKGVVRNVVSYNILIAGLCRHGKLKDAAQLFEAMRREGIH 175

Query: 510 P---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASAL 566
           P   T+N ++    +A +   A+  F QMK  G+ P+  TYN +I      R    A   
Sbjct: 176 PSMVTFNLLIDGYGKAGKMSNALHFFNQMKAAGLQPSVVTYNELIGGFCRARDIAHAIRA 235

Query: 567 VSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE 626
            S M      P  +TYT LI       + D A  +L  +   G+  DV  Y  +L   C 
Sbjct: 236 FSDMKERRLAPTKVTYTILIGAFAKENEMDRAFEMLSEMEKAGLEVDVQSYGVLLHALCM 295

Query: 627 KGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQV------------ 674
           +G++     + + M    V+P+      +  GY   G   S+ +AL++            
Sbjct: 296 EGKMMHARKLFQSMDSKGVKPNNVLYDMMIYGY---GREGSSYKALRLIMEMRKSGLIPN 352

Query: 675 -----LSMRMLCEEVSTLEEKR--SDFEDLILAEDSEAESRIL 710
                L++R+LC E    E +    D ED  L + SE+  R+L
Sbjct: 353 VASYCLTIRLLCNEGKCQEAEALIGDMEDAGL-QTSESICRVL 394



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 63/298 (21%), Positives = 117/298 (39%), Gaps = 25/298 (8%)

Query: 167 ACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLK----LAVWQKNLSAVHEIWEDYIKH 222
            C +   +  A    D+M    V  NEVTYT L+         +   + V E+    ++ 
Sbjct: 47  GCCQSGDVAEARRVFDVMPRLGVTPNEVTYTALIHGYFVRGQREMGFALVGEMRRGGVEP 106

Query: 223 YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLY-INRTSEGRLRSSRLDIPI 281
              ++++    V  + R  + KSA      M    ++  +   N    G  R  +L    
Sbjct: 107 ---NLYTYNCLVGEWCRTGEFKSARLLFDEMPLKGVVRNVVSYNILIAGLCRHGKLK--- 160

Query: 282 PLNALPVMKVLR--------WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDG 333
             +A  + + +R         +F+ +I   G+      A     QM++ GLQPS  TY+ 
Sbjct: 161 --DAAQLFEAMRREGIHPSMVTFNLLIDGYGKAGKMSNALHFFNQMKAAGLQPSVVTYNE 218

Query: 334 FIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRC- 392
            I      R + + +     M++  L P   T   L    +K  E+D A  +L ++ +  
Sbjct: 219 LIGGFCRARDIAHAIRAFSDMKERRLAPTKVTYTILIGAFAKENEMDRAFEMLSEMEKAG 278

Query: 393 --TNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYE 447
              + + +   L A     K   A K+F  M  K ++P+   Y+++   +G   + Y+
Sbjct: 279 LEVDVQSYGVLLHALCMEGKMMHARKLFQSMDSKGVKPNNVLYDMMIYGYGREGSSYK 336



 Score = 41.2 bits (95), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 55/281 (19%), Positives = 109/281 (38%), Gaps = 16/281 (5%)

Query: 93  ILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGE-- 150
           +++ C +S D       + +M    +  N   Y  ++      G  E    L+   GE  
Sbjct: 44  LVHGCCQSGDVAEARRVFDVMPRLGVTPNEVTYTALIHGYFVRGQREMGFALV---GEMR 100

Query: 151 RYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLS 210
           R G+ P L  YN  +G   +      A L  D M  + V +N V+Y  L+        L 
Sbjct: 101 RGGVEPNLYTYNCLVGEWCRTGEFKSARLLFDEMPLKGVVRNVVSYNILIAGLCRHGKLK 160

Query: 211 AVHEIWEDYIK---HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRT 267
              +++E   +   H S+  F+L   +  + +   + +A      M A  +   +     
Sbjct: 161 DAAQLFEAMRREGIHPSMVTFNL--LIDGYGKAGKMSNALHFFNQMKAAGLQPSVVTYNE 218

Query: 268 SEGRLRSSRLDIPIPLNALPVMKVLRW-----SFSDVIHACGRTQNSGLAEQLMLQMQSL 322
             G    +R DI   + A   MK  R      +++ +I A  +      A +++ +M+  
Sbjct: 219 LIGGFCRAR-DIAHAIRAFSDMKERRLAPTKVTYTILIGAFAKENEMDRAFEMLSEMEKA 277

Query: 323 GLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQD 363
           GL+    +Y   + A+  +  + +  ++ + M    +KP +
Sbjct: 278 GLEVDVQSYGVLLHALCMEGKMMHARKLFQSMDSKGVKPNN 318



 Score = 39.3 bits (90), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 52/236 (22%), Positives = 96/236 (40%), Gaps = 32/236 (13%)

Query: 136 GYLEEASNLIYFLGE--RYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNE 193
           G   + SN ++F  +    G+ P +  YN  +G   +   + HA      M  R +   +
Sbjct: 189 GKAGKMSNALHFFNQMKAAGLQPSVVTYNELIGGFCRARDIAHAIRAFSDMKERRLAPTK 248

Query: 194 VTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHM 253
           VTYT L+     +  +    E+  + ++   L +              D++S Y  L H 
Sbjct: 249 VTYTILIGAFAKENEMDRAFEMLSE-MEKAGLEV--------------DVQS-YGVLLH- 291

Query: 254 VALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAE 313
            AL M GK+   R     + S  +    P N L         +  +I+  GR  +S  A 
Sbjct: 292 -ALCMEGKMMHARKLFQSMDSKGVK---PNNVL---------YDMMIYGYGREGSSYKAL 338

Query: 314 QLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL 369
           +L+++M+  GL P+  +Y   IR + ++   +    ++  M+   L+  +S    L
Sbjct: 339 RLIMEMRKSGLIPNVASYCLTIRLLCNEGKCQEAEALIGDMEDAGLQTSESICRVL 394


>gi|255571081|ref|XP_002526491.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534166|gb|EEF35882.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 884

 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 82/371 (22%), Positives = 142/371 (38%), Gaps = 18/371 (4%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +FS +I A     N   A ++   +Q +GL P+   Y+  +      R +     + + M
Sbjct: 350 TFSTIITAFCNEGNVVEARKIFEGIQEVGLSPNVAMYNTLMSGYFKARDVCQANMLYEEM 409

Query: 355 QQNNLKPQDSTIATLSVECSK-ALELDLAEALLDQISRCTNP--KPFSAFLAACDTMDKP 411
           +   + P  +T   L     K   E D  E   D       P    +   +A      + 
Sbjct: 410 RDKGIAPDGATFNILVAGNYKYGKEADSYELFRDWSLSSLVPDCSLYDVSVAGLCWAGQL 469

Query: 412 ERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471
           + A++    M +K  P           F +V A Y           A +I      M   
Sbjct: 470 DEAMQFLEDMLEKGMPPSVV------AFNSVIAAYSRAGFEDNAHKAYKI------MLMF 517

Query: 472 NIQHSHISMKNLLKALGAEGMI---RELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRA 528
            +  S  +  ++L  L  +G +   R+L+    D   P+    +  +L    +  ++  A
Sbjct: 518 GLVPSSSTCSSMLLGLSKKGRLQEARDLLYKMIDKGLPVNKVAFTVLLDGYFKVGDTAGA 577

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
             ++ +M+  GI P+A  ++  ID  S     + A    S M + GF P    Y +LI  
Sbjct: 578 HSLWYEMEARGICPDAIAFSAFIDGLSKAGLVEEAYEAFSEMSKKGFVPNNFVYNSLIHG 637

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
           L + G   EAL L   +  +G+  D+   N I+   C++GR+        +MH   V PD
Sbjct: 638 LCNCGKLHEALKLEREMRQKGLLPDIFTTNIIINGFCKEGRMKSAFDAFAEMHHIGVTPD 697

Query: 649 PSTCHFVFSGY 659
             T + +  GY
Sbjct: 698 TVTYNTLIGGY 708



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 76/176 (43%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           T++T++ +         A +IF+ ++  G+ PN A YN ++      R    A+ L   M
Sbjct: 350 TFSTIITAFCNEGNVVEARKIFEGIQEVGLSPNVAMYNTLMSGYFKARDVCQANMLYEEM 409

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
              G  P   T+  L+     YG   ++  L    SL  +  D  LY+  +   C  G++
Sbjct: 410 RDKGIAPDGATFNILVAGNYKYGKEADSYELFRDWSLSSLVPDCSLYDVSVAGLCWAGQL 469

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           D     +E M +  + P     + V + Y   GF ++A +A +++ M  L    ST
Sbjct: 470 DEAMQFLEDMLEKGMPPSVVAFNSVIAAYSRAGFEDNAHKAYKIMLMFGLVPSSST 525



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 118/570 (20%), Positives = 214/570 (37%), Gaps = 47/570 (8%)

Query: 122 NKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCL 181
           N  + +M+   C+ GYL  A +L+ F+  ++   P +  YN  + A         A   L
Sbjct: 278 NHNFNIMILCFCQKGYLRVAESLL-FVMPKFCCEPDVYAYNILINAYRIRGRTSDALGFL 336

Query: 182 DLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLS--IFSLRKFVWSFTR 239
            LM       + +T++ ++     + N+    +I+E  I+   LS  +      +  + +
Sbjct: 337 HLMIKNGCKPSLITFSTIITAFCNEGNVVEARKIFEG-IQEVGLSPNVAMYNTLMSGYFK 395

Query: 240 LRDLKSA---YETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSF 296
            RD+  A   YE ++    +A  G  + N    G  +  +        A        WS 
Sbjct: 396 ARDVCQANMLYEEMRDK-GIAPDGATF-NILVAGNYKYGK-------EADSYELFRDWSL 446

Query: 297 SDVIHACGRTQNS--GL--AEQLMLQMQSL------GLQPSSHTYDGFIRAIVSDRGLRN 346
           S ++  C     S  GL  A QL   MQ L      G+ PS   ++  I A        N
Sbjct: 447 SSLVPDCSLYDVSVAGLCWAGQLDEAMQFLEDMLEKGMPPSVVAFNSVIAAYSRAGFEDN 506

Query: 347 GMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI---SRCTNPKPFSAFLA 403
             +  KIM    L P  ST +++ +  SK   L  A  LL ++       N   F+  L 
Sbjct: 507 AHKAYKIMLMFGLVPSSSTCSSMLLGLSKKGRLQEARDLLYKMIDKGLPVNKVAFTVLLD 566

Query: 404 ACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRIN 462
               +     A  ++ +M  + + PD   +              E    FS++    +  
Sbjct: 567 GYFKVGDTAGAHSLWYEMEARGICPDAIAFSAFIDGLSKAGLVEEAYEAFSEMS---KKG 623

Query: 463 AIEMDMARNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSL 519
            +  +   N++ H   +   L +AL  E  +R+   L   F          T N +++  
Sbjct: 624 FVPNNFVYNSLIHGLCNCGKLHEALKLEREMRQKGLLPDIF----------TTNIIINGF 673

Query: 520 VEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQT 579
            +      A + F +M   G+ P+  TYN +I     +    SA   ++ M   G+ P  
Sbjct: 674 CKEGRMKSAFDAFAEMHHIGVTPDTVTYNTLIGGYCKVLDMVSADEFLNKMYASGWDPDI 733

Query: 580 MTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQ 639
            TY   I+          A+ +LD +   G+  + + YNT++   C    +D    +  +
Sbjct: 734 TTYNIRIQGFCSSQKISRAVTMLDELIAVGVVPNTVTYNTMMNAVCTD-MLDRAMVLTAK 792

Query: 640 MHQNKVQPDPSTCHFVFSGYVNCGFHNSAM 669
           + +    P+  T + + S +   G    A+
Sbjct: 793 LLKMAFVPNVVTTNVLLSHFCKQGMPEKAL 822



 Score = 56.2 bits (134), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 78/404 (19%), Positives = 154/404 (38%), Gaps = 55/404 (13%)

Query: 311 LAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL- 369
           +AE L+  M     +P  + Y+  I A        + +  L +M +N  KP   T +T+ 
Sbjct: 296 VAESLLFVMPKFCCEPDVYAYNILINAYRIRGRTSDALGFLHLMIKNGCKPSLITFSTII 355

Query: 370 SVECSKALELDLAEAL--LDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LR 426
           +  C++   ++  +    + ++    N   ++  ++         +A  ++ +MR K + 
Sbjct: 356 TAFCNEGNVVEARKIFEGIQEVGLSPNVAMYNTLMSGYFKARDVCQANMLYEEMRDKGIA 415

Query: 427 PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKA 486
           PD  T+ +L +  GN    Y+ G    + DS +      +     +     +S+  L  A
Sbjct: 416 PDGATFNILVA--GN----YKYGK---EADSYELFRDWSLSSLVPDCSLYDVSVAGLCWA 466

Query: 487 LGAEGMIRELIQYFCD---SKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQM-------- 535
               G + E +Q+  D      P     +N+V+ +   A     A + +K M        
Sbjct: 467 ----GQLDEAMQFLEDMLEKGMPPSVVAFNSVIAAYSRAGFEDNAHKAYKIMLMFGLVPS 522

Query: 536 -KTC--------------------------GIPPNAATYNIMIDCCSIIRCFKSASALVS 568
             TC                          G+P N   + +++D    +     A +L  
Sbjct: 523 SSTCSSMLLGLSKKGRLQEARDLLYKMIDKGLPVNKVAFTVLLDGYFKVGDTAGAHSLWY 582

Query: 569 MMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
            M   G  P  + ++A I  L   G  +EA      +S +G   +  +YN+++   C  G
Sbjct: 583 EMEARGICPDAIAFSAFIDGLSKAGLVEEAYEAFSEMSKKGFVPNNFVYNSLIHGLCNCG 642

Query: 629 RIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEAL 672
           ++     +  +M Q  + PD  T + + +G+   G   SA +A 
Sbjct: 643 KLHEALKLEREMRQKGLLPDIFTTNIIINGFCKEGRMKSAFDAF 686



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 71/336 (21%), Positives = 138/336 (41%), Gaps = 42/336 (12%)

Query: 335 IRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTN 394
           +R  ++       +E+L  M++  ++P  S I+ L     +  +      LL  + R   
Sbjct: 215 MRGFMNSEMAYESLEILSRMREVGVRPSSSAISILFRLLLRVGDYGSVWKLLRGMIR-DG 273

Query: 395 PKPFS---AFLAACDTMDKPERAIK--IFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEG 449
           P+P +     +  C       R  +  +F   +    PD+  Y +L      +NA    G
Sbjct: 274 PRPCNHNFNIMILCFCQKGYLRVAESLLFVMPKFCCEPDVYAYNIL------INAYRIRG 327

Query: 450 NMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGT 509
                  ++  +  + + M +N  + S I+   ++ A   EG + E  + F   +    +
Sbjct: 328 R------TSDALGFLHL-MIKNGCKPSLITFSTIITAFCNEGNVVEARKIFEGIQEVGLS 380

Query: 510 PT---YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI----------DCCSI 556
           P    YNT++    +A++  +A  ++++M+  GI P+ AT+NI++          D   +
Sbjct: 381 PNVAMYNTLMSGYFKARDVCQANMLYEEMRDKGIAPDGATFNILVAGNYKYGKEADSYEL 440

Query: 557 IRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLL 616
            R + S S+LV         P    Y   +  L   G  DEA+  L+ +  +G+P  V+ 
Sbjct: 441 FRDW-SLSSLV---------PDCSLYDVSVAGLCWAGQLDEAMQFLEDMLEKGMPPSVVA 490

Query: 617 YNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTC 652
           +N+++      G  D      + M    + P  STC
Sbjct: 491 FNSVIAAYSRAGFEDNAHKAYKIMLMFGLVPSSSTC 526



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/144 (21%), Positives = 66/144 (45%)

Query: 542 PNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNL 601
           P+   YNI+I+   I      A   + +M+++G  P  +T++ +I    + G+  EA  +
Sbjct: 311 PDVYAYNILINAYRIRGRTSDALGFLHLMIKNGCKPSLITFSTIITAFCNEGNVVEARKI 370

Query: 602 LDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVN 661
            + +   G+  +V +YNT++    +   +     + E+M    + PD +T + + +G   
Sbjct: 371 FEGIQEVGLSPNVAMYNTLMSGYFKARDVCQANMLYEEMRDKGIAPDGATFNILVAGNYK 430

Query: 662 CGFHNSAMEALQVLSMRMLCEEVS 685
            G    + E  +  S+  L  + S
Sbjct: 431 YGKEADSYELFRDWSLSSLVPDCS 454



 Score = 46.2 bits (108), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 32/151 (21%), Positives = 67/151 (44%)

Query: 513 NTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVR 572
           NT++   + ++ ++ ++EI  +M+  G+ P+++  +I+      +  + S   L+  M+R
Sbjct: 212 NTLMRGFMNSEMAYESLEILSRMREVGVRPSSSAISILFRLLLRVGDYGSVWKLLRGMIR 271

Query: 573 DGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDV 632
           DG  P    +  +I      G    A +LL ++       DV  YN ++     +GR   
Sbjct: 272 DGPRPCNHNFNIMILCFCQKGYLRVAESLLFVMPKFCCEPDVYAYNILINAYRIRGRTSD 331

Query: 633 IEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
               +  M +N  +P   T   + + + N G
Sbjct: 332 ALGFLHLMIKNGCKPSLITFSTIITAFCNEG 362


>gi|15231338|ref|NP_187348.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75186627|sp|Q9M907.1|PP217_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g06920
 gi|6728999|gb|AAF26996.1|AC016827_7 hypothetical protein [Arabidopsis thaliana]
 gi|332640955|gb|AEE74476.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 116/551 (21%), Positives = 209/551 (37%), Gaps = 39/551 (7%)

Query: 109 TWRMMEEKEI-GL--NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFL 165
            W+   E E  GL  +   Y  M+  LCK   L+EA  +   L E+    P    YN+ +
Sbjct: 257 AWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHL-EKNRRVPCTYAYNTMI 315

Query: 166 GACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSL 225
                      A   L+   ++    + + Y  +L        +    +++E+  K  + 
Sbjct: 316 MGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMKKDAAP 375

Query: 226 SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRL-RSSRLDIPIPLN 284
           ++ +    +    R   L +A+E    M    +   +        RL +S +LD    + 
Sbjct: 376 NLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMF 435

Query: 285 ALPVMKVL---RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSD 341
                KV      +F  +I   G+      A ++  +M     + +S  Y   I+   + 
Sbjct: 436 EEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNH 495

Query: 342 RGLRNGMEVLKIMQQNNLKPQDSTIATLSVECS-KALELDLAEALLDQISR---CTNPKP 397
               +G ++ K M   N  P D  +    ++C  KA E +   A+ ++I       + + 
Sbjct: 496 GRKEDGHKIYKDMINQNCSP-DLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARS 554

Query: 398 FSAFLAACDTMDKPERAIKIFAKMR-QKLRPDIRTYELLFSLF---GNVNAPYE------ 447
           +S  +             ++F  M+ Q    D R Y ++   F   G VN  Y+      
Sbjct: 555 YSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMK 614

Query: 448 ----------EGNMFSQVDSAKRINAIEM---DMARNNIQHSHISMKNLLKALGAEGMIR 494
                      G++   +    R++   M   +     I+ + +   +L+   G  G I 
Sbjct: 615 TKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRID 674

Query: 495 ELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI 551
           E      +      TP   T+N++L +LV+A+E + A+  F+ MK     PN  TY I+I
Sbjct: 675 EAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILI 734

Query: 552 DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIP 611
           +    +R F  A      M + G  P T++YT +I  L   G+  EA  L D     G  
Sbjct: 735 NGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGV 794

Query: 612 HDVLLYNTILK 622
            D   YN +++
Sbjct: 795 PDSACYNAMIE 805



 Score = 79.3 bits (194), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 91/367 (24%), Positives = 159/367 (43%), Gaps = 32/367 (8%)

Query: 326 PSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEAL 385
           P+  TY+  I  +     L    E+   MQ+  L P   T+  +     K+ +LD A A+
Sbjct: 375 PNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAM 434

Query: 386 LDQISR--CT-NPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLF-SLFGN 441
            +++    CT +   F + +     + + + A K++ KM   L  D RT  +++ SL  N
Sbjct: 435 FEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKM---LDSDCRTNSIVYTSLIKN 491

Query: 442 V--NAPYEEGNMFSQVDSAKRINAIEMDMARNN----IQHSHISMKNLLKALGAEGMIRE 495
              +   E+G+             I  DM   N    +Q  +  M  + KA G     R 
Sbjct: 492 FFNHGRKEDGH------------KIYKDMINQNCSPDLQLLNTYMDCMFKA-GEPEKGRA 538

Query: 496 LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCS 555
           + +     +      +Y+ ++H L++A  ++   E+F  MK  G   +   YNI+ID   
Sbjct: 539 MFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVID--G 596

Query: 556 IIRCFK--SASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHD 613
             +C K   A  L+  M   GF P  +TY ++I  L      DEA  L +    + I  +
Sbjct: 597 FCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELN 656

Query: 614 VLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           V++Y++++    + GRID    I+E++ Q  + P+  T + +    V     N A+   Q
Sbjct: 657 VVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQ 716

Query: 674 VLSMRML 680
             SM+ L
Sbjct: 717 --SMKEL 721



 Score = 66.2 bits (160), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 84/443 (18%), Positives = 174/443 (39%), Gaps = 69/443 (15%)

Query: 237 FTRLRDLKSAYETLQHMVALAMMGKLYINRTSEG-----RLRSSRLDIPIPLNALPVMKV 291
           F ++++L   YE   H+    + G     R          ++SS LD  I L        
Sbjct: 191 FQQMQEL--GYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVL-------- 240

Query: 292 LRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVL 351
               ++  I + G+     +A +   ++++ GL+P   TY   I  +     L   +E+ 
Sbjct: 241 ----YNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMF 296

Query: 352 KIMQQNNLKPQDSTIATLSVECSKALELDLAEALLD-QISRCTNPK--PFSAFLAACDTM 408
           + +++N   P      T+ +    A + D A +LL+ Q ++ + P    ++  L     M
Sbjct: 297 EHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKM 356

Query: 409 DKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
            K + A+K+F +M++   P++ TY +L  +                        A ++D 
Sbjct: 357 GKVDEALKVFEEMKKDAAPNLSTYNILIDML---------------------CRAGKLDT 395

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRA 528
           A          +++ ++  G    +R                T N ++  L ++Q+   A
Sbjct: 396 A--------FELRDSMQKAGLFPNVR----------------TVNIMVDRLCKSQKLDEA 431

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
             +F++M      P+  T+  +ID    +     A  +   M+       ++ YT+LIK 
Sbjct: 432 CAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKN 491

Query: 589 LLDYGDFDEALNLL-DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
             ++G  ++   +  D+++    P D+ L NT +    + G  +    + E++   +  P
Sbjct: 492 FFNHGRKEDGHKIYKDMINQNCSP-DLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFVP 550

Query: 648 DPSTCHFVFSGYVNCGFHNSAME 670
           D  +   +  G +  GF N   E
Sbjct: 551 DARSYSILIHGLIKAGFANETYE 573



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 57/271 (21%), Positives = 100/271 (36%), Gaps = 18/271 (6%)

Query: 404 ACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRIN 462
            C   +K      +   MR+ K RP    Y  L   F  VN       +F Q+       
Sbjct: 142 GCVKANKLREGYDVVQMMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEP 201

Query: 463 AIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTP---LGTPTYNTVLHSL 519
            + +                L++    EG +   +    + K+         YN  + S 
Sbjct: 202 TVHL-------------FTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSF 248

Query: 520 VEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQT 579
            +  +   A + F +++  G+ P+  TY  MI           A  +   + ++   P T
Sbjct: 249 GKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCT 308

Query: 580 MTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQ 639
             Y  +I      G FDEA +LL+    +G    V+ YN IL    + G++D    + E+
Sbjct: 309 YAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEE 368

Query: 640 MHQNKVQPDPSTCHFVFSGYVNCGFHNSAME 670
           M ++   P+ ST + +       G  ++A E
Sbjct: 369 MKKD-AAPNLSTYNILIDMLCRAGKLDTAFE 398



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 63/145 (43%), Gaps = 3/145 (2%)

Query: 510 PTYNTVLHSL---VEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASAL 566
           P+ NT +  +   V+A +     ++ + M+     P  + Y  +I   S +        L
Sbjct: 131 PSVNTCIEMVLGCVKANKLREGYDVVQMMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTL 190

Query: 567 VSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE 626
              M   G+ P    +T LI+     G  D AL+LLD +    +  D++LYN  +    +
Sbjct: 191 FQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGK 250

Query: 627 KGRIDVIEFIIEQMHQNKVQPDPST 651
            G++D+      ++  N ++PD  T
Sbjct: 251 VGKVDMAWKFFHEIEANGLKPDEVT 275



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 93/520 (17%), Positives = 197/520 (37%), Gaps = 70/520 (13%)

Query: 106 VMETWRMMEE--KEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNS 163
           V E  ++ EE  K+   N   Y +++  LC+ G L+ A  L   + ++ G++P +   N 
Sbjct: 359 VDEALKVFEEMKKDAAPNLSTYNILIDMLCRAGKLDTAFELRDSM-QKAGLFPNVRTVNI 417

Query: 164 FLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI--- 220
            +    K   +  A    + MD ++   +E+T+  L+        +   ++++E  +   
Sbjct: 418 MVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSD 477

Query: 221 -KHYSLSIFSLRKFVWSFTRLRDLKSAYETL-------------QHMVALAMMGKLYINR 266
            +  S+   SL K  ++  R  D    Y+ +              +M  +   G+    R
Sbjct: 478 CRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGR 537

Query: 267 TSEGRLRSSRLDIPIPLNALPVMKVLRWSFS--------------------------DVI 300
                +++ R        ++ +  +++  F+                          D  
Sbjct: 538 AMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGF 597

Query: 301 HACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLK 360
             CG+      A QL+ +M++ G +P+  TY   I  +     L     + +  +   ++
Sbjct: 598 CKCGKVNK---AYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIE 654

Query: 361 PQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKPERAIKI 417
                 ++L     K   +D A  +L+++ +     N   +++ L A    ++   A+  
Sbjct: 655 LNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVC 714

Query: 418 FAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHS 476
           F  M++ K  P+  TY +L              N   +V    +      +M +  ++ S
Sbjct: 715 FQSMKELKCTPNQVTYGILI-------------NGLCKVRKFNKAFVFWQEMQKQGMKPS 761

Query: 477 HISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFK 533
            IS   ++  L   G I E    F   K   G P    YN ++  L     +  A  +F+
Sbjct: 762 TISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLFE 821

Query: 534 QMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRD 573
           + +  G+P +  T  +++D      C + A A+V  ++R+
Sbjct: 822 ETRRRGLPIHNKTCVVLLDTLHKNDCLEQA-AIVGAVLRE 860



 Score = 40.8 bits (94), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 58/257 (22%), Positives = 102/257 (39%), Gaps = 27/257 (10%)

Query: 105 FVMETWRM---MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVY 161
           F  ET+ +   M+E+   L+ + Y +++   CK G + +A  L+  +  + G  P +  Y
Sbjct: 567 FANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTK-GFEPTVVTY 625

Query: 162 NSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK 221
            S +   AK+  +  A +  +   S+ +  N V Y+ L+           V  I E Y+ 
Sbjct: 626 GSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLI------DGFGKVGRIDEAYLI 679

Query: 222 HYSLSIFSLRKFVWSFTRLRD-LKSAYETLQHMVALAMMGKLYI--NRTSEGRLRSSRLD 278
              L    L   ++++  L D L  A E  + +V    M +L    N+ + G L +    
Sbjct: 680 LEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCK 739

Query: 279 IPIPLNALPV--------MKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHT 330
           +     A           MK    S++ +I    +  N   A  L  + ++ G  P S  
Sbjct: 740 VRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSAC 799

Query: 331 YDGFIRAIVSDRGLRNG 347
           Y+  I       GL NG
Sbjct: 800 YNAMI------EGLSNG 810


>gi|414881815|tpg|DAA58946.1| TPA: hypothetical protein ZEAMMB73_360564 [Zea mays]
          Length = 792

 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 80/333 (24%), Positives = 144/333 (43%), Gaps = 19/333 (5%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           ++  +I  C     +    +L  QM   GL PS++ ++  I+ ++ D+  ++ + +LK++
Sbjct: 328 TYGVLIKGCDAEGMTDETYKLCRQMIEQGLLPSTYEFNLVIKGLLRDKRWKDAIGLLKLV 387

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP-----FSAFLAACDTMD 409
               + P   T   L     K  +L  A  L D++      KP      S  L  C+   
Sbjct: 388 VDTGV-PDVFTYGCLIHWLCKHQKLHEAVNLWDKMKE-AGVKPSIVTYHSLLLGYCEK-G 444

Query: 410 KPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
           + + A+K++++M  K   P+  TY  L   +    A      + +++    R N +    
Sbjct: 445 RMDEALKLYSEMPDKGFPPNEVTYTTLMKGYIKKKAFDNAYALLNEM----RQNGVSCGD 500

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRA 528
              NI  + + M N +        + E+++ F        T TYN++++  V+A     A
Sbjct: 501 YTYNILINGLYMVNRVCE------VDEMLKRFLSEGFVPTTMTYNSIINGFVKAGMMGSA 554

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
             +++QM+  GI PN  TY   ID      C   A  L+  + RDG  P    Y A I  
Sbjct: 555 FGMYRQMRKKGITPNIVTYTSFIDGYCRTNCCDLAVKLLIYVRRDGIQPDIAAYNAFIDT 614

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTIL 621
               G+   AL+ L L+  +G+  DV +YN+ +
Sbjct: 615 FCKQGNMSRALHFLVLLLKDGLTPDVTVYNSFV 647



 Score = 74.3 bits (181), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 85/442 (19%), Positives = 183/442 (41%), Gaps = 36/442 (8%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           ++  I    + +++  A Q++ +M+  G +P   TY   +  +V  R +   + +   M 
Sbjct: 223 YAITISGLCKLRDADRALQVLGKMREAGFEPWELTYSSVVDVLVKVRRMDEALRLKDQML 282

Query: 356 QNNLKPQDSTIAT-------LSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTM 408
               K  D  +AT       L+ E  KAL+L   E + D ++  TN   +   +  CD  
Sbjct: 283 LATGKKMDVVLATMLMHGYCLNGEVGKALDL-FDEVVSDGVTP-TNVT-YGVLIKGCDAE 339

Query: 409 DKPERAIKIFAKM-RQKLRPDIRTYEL----------------LFSLFGNVNAP--YEEG 449
              +   K+  +M  Q L P    + L                L  L  +   P  +  G
Sbjct: 340 GMTDETYKLCRQMIEQGLLPSTYEFNLVIKGLLRDKRWKDAIGLLKLVVDTGVPDVFTYG 399

Query: 450 NMFSQVDSAKRIN-AIEM--DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFC---DS 503
            +   +   ++++ A+ +   M    ++ S ++  +LL     +G + E ++ +    D 
Sbjct: 400 CLIHWLCKHQKLHEAVNLWDKMKEAGVKPSIVTYHSLLLGYCEKGRMDEALKLYSEMPDK 459

Query: 504 KTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSA 563
             P    TY T++   ++ +    A  +  +M+  G+     TYNI+I+   ++      
Sbjct: 460 GFPPNEVTYTTLMKGYIKKKAFDNAYALLNEMRQNGVSCGDYTYNILINGLYMVNRVCEV 519

Query: 564 SALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKK 623
             ++   + +GF P TMTY ++I   +  G    A  +   +  +GI  +++ Y + +  
Sbjct: 520 DEMLKRFLSEGFVPTTMTYNSIINGFVKAGMMGSAFGMYRQMRKKGITPNIVTYTSFIDG 579

Query: 624 ACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEE 683
            C     D+   ++  + ++ +QPD +  +     +   G  + A+  L +L    L  +
Sbjct: 580 YCRTNCCDLAVKLLIYVRRDGIQPDIAAYNAFIDTFCKQGNMSRALHFLVLLLKDGLTPD 639

Query: 684 VSTLEEKRSDFEDL-ILAEDSE 704
           V+      + +++L ++AE S+
Sbjct: 640 VTVYNSFVTGYKNLKMMAEASK 661



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 66/148 (44%), Gaps = 1/148 (0%)

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           Y+ V+ + V       A+ +F +M   G+ P+   Y I I     +R    A  ++  M 
Sbjct: 188 YDVVIRACVRGGMHCDAVRLFDEMAGAGVKPDERVYAITISGLCKLRDADRALQVLGKMR 247

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSL-EGIPHDVLLYNTILKKACEKGRI 630
             GF P  +TY++++ +L+     DEAL L D + L  G   DV+L   ++   C  G +
Sbjct: 248 EAGFEPWELTYSSVVDVLVKVRRMDEALRLKDQMLLATGKKMDVVLATMLMHGYCLNGEV 307

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
                + +++  + V P   T   +  G
Sbjct: 308 GKALDLFDEVVSDGVTPTNVTYGVLIKG 335



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 78/351 (22%), Positives = 136/351 (38%), Gaps = 28/351 (7%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL-- 369
           A +L  +M   G  P+  TY   ++  +  +   N   +L  M+QN +   D T   L  
Sbjct: 449 ALKLYSEMPDKGFPPNEVTYTTLMKGYIKKKAFDNAYALLNEMRQNGVSCGDYTYNILIN 508

Query: 370 -------SVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMR 422
                    E  + L+  L+E  +   +  T     + F+ A         A  ++ +MR
Sbjct: 509 GLYMVNRVCEVDEMLKRFLSEGFVP--TTMTYNSIINGFVKA----GMMGSAFGMYRQMR 562

Query: 423 QK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR-NNIQHSHISM 480
           +K + P+I TY      +   N       +   V    R + I+ D+A  N    +    
Sbjct: 563 KKGITPNIVTYTSFIDGYCRTNCCDLAVKLLIYV----RRDGIQPDIAAYNAFIDTFCKQ 618

Query: 481 KNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGI 540
            N+ +AL        L+    D  TP  T  YN+ +      +    A + +  M    +
Sbjct: 619 GNMSRAL------HFLVLLLKDGLTPDVT-VYNSFVTGYKNLKMMAEASKFYYSMIKQRV 671

Query: 541 PPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALN 600
             +   Y  +ID  S +     A  L S M+ +   P   T+TAL   L   GD D A  
Sbjct: 672 VADTEIYTTLIDGFSKVGNVAFALELYSEMMANHVIPDDKTFTALTHGLCRSGDIDGAKR 731

Query: 601 LLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
           LLD +    +  +++ YN ++      G++     + ++M  + V PD +T
Sbjct: 732 LLDDMRRLDVSPNIVTYNMLINACVRDGKLQEAFQLHDEMLSSGVVPDDTT 782



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 53/277 (19%), Positives = 103/277 (37%), Gaps = 14/277 (5%)

Query: 313 EQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVE 372
           ++++ +  S G  P++ TY+  I   V    + +   + + M++  + P   T  +    
Sbjct: 520 DEMLKRFLSEGFVPTTMTYNSIINGFVKAGMMGSAFGMYRQMRKKGITPNIVTYTSFIDG 579

Query: 373 CSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKP---ERAIKIFAKM-RQKLRPD 428
             +    DLA  LL  + R       +A+ A  DT  K     RA+     + +  L PD
Sbjct: 580 YCRTNCCDLAVKLLIYVRRDGIQPDIAAYNAFIDTFCKQGNMSRALHFLVLLLKDGLTPD 639

Query: 429 IRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALG 488
           +  Y    + + N+    E    +  +   + +   E+          + ++ +    +G
Sbjct: 640 VTVYNSFVTGYKNLKMMAEASKFYYSMIKQRVVADTEI----------YTTLIDGFSKVG 689

Query: 489 AEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYN 548
                 EL      +       T+  + H L  + +   A  +   M+   + PN  TYN
Sbjct: 690 NVAFALELYSEMMANHVIPDDKTFTALTHGLCRSGDIDGAKRLLDDMRRLDVSPNIVTYN 749

Query: 549 IMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
           ++I+ C      + A  L   M+  G  P   TY  L
Sbjct: 750 MLINACVRDGKLQEAFQLHDEMLSSGVVPDDTTYDIL 786



 Score = 43.5 bits (101), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 110/591 (18%), Positives = 212/591 (35%), Gaps = 42/591 (7%)

Query: 93  ILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGE-- 150
           ++  C R       +  +  M    +  + + Y + +  LCK   L +A   +  LG+  
Sbjct: 191 VIRACVRGGMHCDAVRLFDEMAGAGVKPDERVYAITISGLCK---LRDADRALQVLGKMR 247

Query: 151 RYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVW----- 205
             G  P    Y+S +    K+  M  A    D M      K +V    +L          
Sbjct: 248 EAGFEPWELTYSSVVDVLVKVRRMDEALRLKDQMLLATGKKMDVVLATMLMHGYCLNGEV 307

Query: 206 QKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLY-I 264
            K L    E+  D +   +++   L K   +   + D    Y+  + M+   ++   Y  
Sbjct: 308 GKALDLFDEVVSDGVTPTNVTYGVLIKGCDA-EGMTD--ETYKLCRQMIEQGLLPSTYEF 364

Query: 265 NRTSEGRLRSSRLDIPIPLNALPVMKVLR--WSFSDVIHACGRTQNSGLAEQLMLQMQSL 322
           N   +G LR  R    I L  L V   +   +++  +IH   + Q    A  L  +M+  
Sbjct: 365 NLVIKGLLRDKRWKDAIGLLKLVVDTGVPDVFTYGCLIHWLCKHQKLHEAVNLWDKMKEA 424

Query: 323 GLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLA 382
           G++PS  TY   +        +   +++   M      P + T  TL     K    D A
Sbjct: 425 GVKPSIVTYHSLLLGYCEKGRMDEALKLYSEMPDKGFPPNEVTYTTLMKGYIKKKAFDNA 484

Query: 383 EALLDQISR----CTNPKPFSAFLAACDTMDKPERAIKIFAK-MRQKLRPDIRTYELLFS 437
            ALL+++ +    C +   ++  +     +++     ++  + + +   P   TY  + +
Sbjct: 485 YALLNEMRQNGVSCGD-YTYNILINGLYMVNRVCEVDEMLKRFLSEGFVPTTMTYNSIIN 543

Query: 438 LFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALG----AEGMI 493
            F           M+ Q             M +  I  + ++  + +         +  +
Sbjct: 544 GFVKAGMMGSAFGMYRQ-------------MRKKGITPNIVTYTSFIDGYCRTNCCDLAV 590

Query: 494 RELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC 553
           + LI    D   P     YN  + +  +     RA+     +   G+ P+   YN  +  
Sbjct: 591 KLLIYVRRDGIQP-DIAAYNAFIDTFCKQGNMSRALHFLVLLLKDGLTPDVTVYNSFVTG 649

Query: 554 CSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL-DLVSLEGIPH 612
              ++    AS     M++      T  YT LI      G+   AL L  ++++   IP 
Sbjct: 650 YKNLKMMAEASKFYYSMIKQRVVADTEIYTTLIDGFSKVGNVAFALELYSEMMANHVIPD 709

Query: 613 DVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
           D   +  +    C  G ID  + +++ M +  V P+  T + + +  V  G
Sbjct: 710 DK-TFTALTHGLCRSGDIDGAKRLLDDMRRLDVSPNIVTYNMLINACVRDG 759


>gi|356499327|ref|XP_003518493.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Glycine max]
          Length = 725

 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 81/398 (20%), Positives = 157/398 (39%), Gaps = 23/398 (5%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           +  +IHA         A QL+  M  +  +P   T++  I  +     +    ++L  M 
Sbjct: 243 YQTLIHALCENNRVSEALQLLEDMFLMCCEPDVQTFNDVIHGLCRAGRIHEAAKLLDRML 302

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAI 415
                    T   L     +  ++D A ALL++I    N   ++  ++      + E A 
Sbjct: 303 LRGFSTDALTYGYLMHGLCRMGQVDEARALLNKIPN-PNTVLYNTLISGYVASGRFEEAK 361

Query: 416 KIFAK--MRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM--DMARN 471
            +     +     PD  T+ ++                   V     ++A+E+  +M   
Sbjct: 362 DLLYNNMVIAGYEPDAYTFNIMID---------------GLVKKGYLVSALELLNEMVAK 406

Query: 472 NIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRA 528
             + + I+   L+     +G + E   ++         L T  YN ++ +L +      A
Sbjct: 407 RFEPNVITYTILINGFCKQGRLEEAAEIVNSMSAKGLSLNTVGYNCLICALCKDGNIEEA 466

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
           +++F +M   G  P+  T+N +I+        + A +L   M  +G    T+TY  L+  
Sbjct: 467 LQLFGEMSGKGCKPDIYTFNSLINGLCKNHKMEEALSLYHDMFLEGVIANTVTYNTLVHA 526

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
            L      +A  L+D +   G P D + YN ++K  C+ G ++    + E+M    + P 
Sbjct: 527 FLMRDSIQQAFKLVDEMLFRGCPLDNITYNGLIKALCKTGAVEKGLGLFEEMLGKGIFPT 586

Query: 649 PSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
             +C+ + SG    G  N A++ LQ +  R L  ++ T
Sbjct: 587 IISCNILISGLCRTGKVNDALKFLQDMIHRGLTPDIVT 624



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 111/554 (20%), Positives = 208/554 (37%), Gaps = 56/554 (10%)

Query: 123 KCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLD 182
           K Y +++  L  G     A N+ Y +  R G+ P +  +   + A   +  +  A   L 
Sbjct: 171 KSYNVVLDILVDGDCPRVAPNVFYDMLSR-GVSPTVYTFGVVMKALCMVSEVDSACSLLR 229

Query: 183 LMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWED-YIKHYSLSIFSLRKFVWSFTRLR 241
            M       N V Y  L+        +S   ++ ED ++      + +    +    R  
Sbjct: 230 DMAKHGCVPNSVIYQTLIHALCENNRVSEALQLLEDMFLMCCEPDVQTFNDVIHGLCRAG 289

Query: 242 DLKSAYETLQHMVALAM-MGKLYINRTSEGRLRSSRLD-IPIPLNALP-VMKVLRWSFSD 298
            +  A + L  M+        L       G  R  ++D     LN +P    VL  +   
Sbjct: 290 RIHEAAKLLDRMLLRGFSTDALTYGYLMHGLCRMGQVDEARALLNKIPNPNTVLYNTLIS 349

Query: 299 VIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNN 358
              A GR + +   + L   M   G +P ++T++  I  +V    L + +E+L  M    
Sbjct: 350 GYVASGRFEEA--KDLLYNNMVIAGYEPDAYTFNIMIDGLVKKGYLVSALELLNEMVAKR 407

Query: 359 LKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKPERAI 415
            +P   T   L     K   L+ A  +++ +S      N   ++  + A       E A+
Sbjct: 408 FEPNVITYTILINGFCKQGRLEEAAEIVNSMSAKGLSLNTVGYNCLICALCKDGNIEEAL 467

Query: 416 KIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQ 474
           ++F +M  K  +PDI T+                             N++   + +N+  
Sbjct: 468 QLFGEMSGKGCKPDIYTF-----------------------------NSLINGLCKNHKM 498

Query: 475 HSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQ 534
              +S   L   +  EG+I               T TYNT++H+ +      +A ++  +
Sbjct: 499 EEALS---LYHDMFLEGVIAN-------------TVTYNTLVHAFLMRDSIQQAFKLVDE 542

Query: 535 MKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGD 594
           M   G P +  TYN +I         +    L   M+  G +P  ++   LI  L   G 
Sbjct: 543 MLFRGCPLDNITYNGLIKALCKTGAVEKGLGLFEEMLGKGIFPTIISCNILISGLCRTGK 602

Query: 595 FDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHF 654
            ++AL  L  +   G+  D++ YN+++   C+ G +     +  ++    ++PD  T + 
Sbjct: 603 VNDALKFLQDMIHRGLTPDIVTYNSLINGLCKMGHVQEASNLFNKLQSEGIRPDAITYNT 662

Query: 655 VFSGYVNCGFHNSA 668
           + S + + G  N A
Sbjct: 663 LISRHCHEGMFNDA 676



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 127/598 (21%), Positives = 245/598 (40%), Gaps = 80/598 (13%)

Query: 90  FFHILNYCARSPDPLFVMETWRMMEE-----KEIGL--NNKCYLLMMQALCKGGYLEEAS 142
           + H  + C    D L  +  ++++E+     K+ GL      ++L+M+   K G   +A+
Sbjct: 95  YSHTFDACYLLIDKLGAVGDFKVIEKLLKQMKDEGLLFKESLFILIMKHYGKAGLPGQAT 154

Query: 143 NLIYFLGERYGIYPILPVYNSFL-----GACAKLHSMVHANLCLDLMDSRMVGKNEVTYT 197
            L+  +   Y   P    YN  L     G C +    V  N+  D++ SR V     T+ 
Sbjct: 155 RLLLDMWGVYSCDPTFKSYNVVLDILVDGDCPR----VAPNVFYDML-SRGVSPTVYTFG 209

Query: 198 ELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALA 257
            ++K       + +   +  D  KH  +                     Y+TL H +   
Sbjct: 210 VVMKALCMVSEVDSACSLLRDMAKHGCVPN----------------SVIYQTLIHALCEN 253

Query: 258 MMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLML 317
                  NR SE       L+    +   P ++    +F+DVIH   R      A +L+ 
Sbjct: 254 -------NRVSEAL---QLLEDMFLMCCEPDVQ----TFNDVIHGLCRAGRIHEAAKLLD 299

Query: 318 QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIA--TLSVECSK 375
           +M   G    + TY G++       GL    +V +     N  P  +T+   TL      
Sbjct: 300 RMLLRGFSTDALTY-GYLM-----HGLCRMGQVDEARALLNKIPNPNTVLYNTLISGYVA 353

Query: 376 ALELDLAEALL--DQISRCTNPKPFSAFLAACDTMDKPE---RAIKIFAKM-RQKLRPDI 429
           +   + A+ LL  + +     P  ++ F    D + K      A+++  +M  ++  P++
Sbjct: 354 SGRFEEAKDLLYNNMVIAGYEPDAYT-FNIMIDGLVKKGYLVSALELLNEMVAKRFEPNV 412

Query: 430 RTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGA 489
            TY +L      +N   ++G +    ++A+ +N+    M+   +  + +    L+ AL  
Sbjct: 413 ITYTIL------INGFCKQGRL---EEAAEIVNS----MSAKGLSLNTVGYNCLICALCK 459

Query: 490 EGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAAT 546
           +G I E +Q F +       P   T+N++++ L +  +   A+ ++  M   G+  N  T
Sbjct: 460 DGNIEEALQLFGEMSGKGCKPDIYTFNSLINGLCKNHKMEEALSLYHDMFLEGVIANTVT 519

Query: 547 YNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVS 606
           YN ++    +    + A  LV  M+  G     +TY  LIK L   G  ++ L L + + 
Sbjct: 520 YNTLVHAFLMRDSIQQAFKLVDEMLFRGCPLDNITYNGLIKALCKTGAVEKGLGLFEEML 579

Query: 607 LEGIPHDVLLYNTILKKACEKGRI-DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
            +GI   ++  N ++   C  G++ D ++F+ + +H+  + PD  T + + +G    G
Sbjct: 580 GKGIFPTIISCNILISGLCRTGKVNDALKFLQDMIHRG-LTPDIVTYNSLINGLCKMG 636



 Score = 47.4 bits (111), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 50/222 (22%), Positives = 90/222 (40%), Gaps = 8/222 (3%)

Query: 469 ARNNIQHSHISMKNLLKALGAEG---MIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQES 525
           A+    H+  +   L+  LGA G   +I +L++   D         +  ++    +A   
Sbjct: 91  AQKGYSHTFDACYLLIDKLGAVGDFKVIEKLLKQMKDEGLLFKESLFILIMKHYGKAGLP 150

Query: 526 HRAMEIFKQM-KTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
            +A  +   M       P   +YN+++D      C + A  +   M+  G  P   T+  
Sbjct: 151 GQATRLLLDMWGVYSCDPTFKSYNVVLDILVDGDCPRVAPNVFYDMLSRGVSPTVYTFGV 210

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
           ++K L    + D A +LL  ++  G   + ++Y T++   CE  R+     ++E M    
Sbjct: 211 VMKALCMVSEVDSACSLLRDMAKHGCVPNSVIYQTLIHALCENNRVSEALQLLEDMFLMC 270

Query: 645 VQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
            +PD  T + V  G    G  + A + L     RML    ST
Sbjct: 271 CEPDVQTFNDVIHGLCRAGRIHEAAKLLD----RMLLRGFST 308


>gi|449442579|ref|XP_004139059.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Cucumis sativus]
          Length = 749

 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 88/396 (22%), Positives = 161/396 (40%), Gaps = 37/396 (9%)

Query: 293 RWSFSDVIHACG-------RTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLR 345
           R   S  I+AC        RT    LA ++  ++   G++ + +T +  + A+  DR   
Sbjct: 215 RKGVSVSINACNKLLGGLVRTGWVDLAWEIYGEVVRGGIELNVYTLNIMVNALCKDRKFE 274

Query: 346 NGMEVLKIMQQNNLKPQDSTIATL-SVECSKALELDLAEALLDQISRCTNPK--PFSAFL 402
           N M  L  M+   +     T  TL +  C + L  +  + L    SR   P    ++A L
Sbjct: 275 NVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAIL 334

Query: 403 AACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI 461
                + K +RA  +  +M Q  L P+  TY  L                   V+  +R 
Sbjct: 335 YGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLL------------------VEICRRD 376

Query: 462 NAIEM-----DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYN 513
           N +E      +M+R  +    +S  +L+  L   G + + + +F + +     P    Y 
Sbjct: 377 NILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYT 436

Query: 514 TVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRD 573
            ++           A+++  +M   G   +  TYN  ++     + F  A  L + MV  
Sbjct: 437 ILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVER 496

Query: 574 GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVI 633
           G  P   T+T LI+     G+ D+ALNL + +    +  D + YNT++   C+ G +   
Sbjct: 497 GMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRA 556

Query: 634 EFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAM 669
           + + + M +  + PD  +   V +G+ + G    A+
Sbjct: 557 KELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEAL 592



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 78/365 (21%), Positives = 154/365 (42%), Gaps = 22/365 (6%)

Query: 305 RTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDS 364
           R  N   A+++  +M   G+ P   ++   I  +  +  L   +   + M+++ + P D+
Sbjct: 374 RRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVP-DN 432

Query: 365 TIATLSVE--CSKALELDLAEALLDQISRC--TNPKPFSAFLAACDTMDKPERAIKIFAK 420
            I T+ ++  C      D  +   + ++R    +   ++ FL           A  +F +
Sbjct: 433 VIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNE 492

Query: 421 MRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHIS 479
           M ++ + PD  T+  L      +    ++GNM       K +N  E  M R N++   ++
Sbjct: 493 MVERGMVPDFYTFTTL------IRGYCKDGNM------DKALNLFEA-MVRTNLKPDKVT 539

Query: 480 MKNLLKAL---GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMK 536
              L+      G  G  +EL              +Y TVL+    +     A+ +  QM 
Sbjct: 540 YNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQML 599

Query: 537 TCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFD 596
             GI PN  T N +I           A   +S M+ +G  P + +Y  LI   L   + +
Sbjct: 600 EKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLE 659

Query: 597 EALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVF 656
           +A  L++ +   G+  +++ YN IL   C +G++   E ++ +M +  + PD +T   + 
Sbjct: 660 KAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLI 719

Query: 657 SGYVN 661
           +G+V+
Sbjct: 720 NGHVS 724



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 89/382 (23%), Positives = 144/382 (37%), Gaps = 49/382 (12%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ +I+A  R      A QL+    S G++P   TY+  +  +          +VL  M
Sbjct: 294 TYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEM 353

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKP 411
            Q  L P  +T  TL VE  +   +  A+ + D++SR     +   FS+ +         
Sbjct: 354 LQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHL 413

Query: 412 ERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
            +A+  F +M R  + PD   Y +L   F                              R
Sbjct: 414 YQALMHFREMERSGIVPDNVIYTILIDGF-----------------------------CR 444

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAME 530
           N      + M++ + A G           F D        TYNT L+ L + +    A  
Sbjct: 445 NGALSDALKMRDEMLARGC----------FMD------VVTYNTFLNGLCKKKMFADADM 488

Query: 531 IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590
           +F +M   G+ P+  T+  +I           A  L   MVR    P  +TY  LI    
Sbjct: 489 LFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFC 548

Query: 591 DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650
             G+   A  L D +  + I  D + Y T+L   C  G +     + +QM +  ++P+  
Sbjct: 549 KAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLV 608

Query: 651 TCHFVFSGYVNCGFHNSAMEAL 672
           TC+ +  GY   G    A E L
Sbjct: 609 TCNTLIKGYCRSGDMPKAYEYL 630



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 58/247 (23%), Positives = 100/247 (40%), Gaps = 38/247 (15%)

Query: 467 DMARNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQ 523
           DM    +    ++   L+ A   EG++ E   L+  F       G  TYN +L+ L +  
Sbjct: 282 DMEGKGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIG 341

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYN-IMIDCC------------------SIIRCFKSAS 564
           +  RA ++  +M   G+ PNAATYN ++++ C                   ++    S S
Sbjct: 342 KYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFS 401

Query: 565 ALVSMMVRDG----------------FYPQTMTYTALIKILLDYGDFDEALNLLDLVSLE 608
           +L+ ++ R+G                  P  + YT LI      G   +AL + D +   
Sbjct: 402 SLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLAR 461

Query: 609 GIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSA 668
           G   DV+ YNT L   C+K      + +  +M +  + PD  T   +  GY   G  + A
Sbjct: 462 GCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKA 521

Query: 669 MEALQVL 675
           +   + +
Sbjct: 522 LNLFEAM 528



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 109/460 (23%), Positives = 183/460 (39%), Gaps = 42/460 (9%)

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
           ME K +  +   Y  ++ A C+ G +EEA  L+     R G+ P L  YN+ L    K+ 
Sbjct: 283 MEGKGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSR-GMEPGLLTYNAILYGLCKIG 341

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSL-SIFSLR 231
               A   L  M    +  N  TY  LL     + N+    EI+++  +   L  + S  
Sbjct: 342 KYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFS 401

Query: 232 KFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTS----EGRLRSSRLDIPIPLNALP 287
             +    R   L   Y+ L H   +   G +  N       +G  R+  L   + +    
Sbjct: 402 SLIGVLARNGHL---YQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRD-- 456

Query: 288 VMKVLRWSFSDVI------HACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSD 341
              + R  F DV+      +   + +    A+ L  +M   G+ P  +T+   IR    D
Sbjct: 457 -EMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKD 515

Query: 342 RGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPF 398
             +   + + + M + NLKP   T  TL     KA E+  A+ L D + R     +   +
Sbjct: 516 GNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISY 575

Query: 399 SAFLAA-CDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLF---GNVNAPYEEGNMFS 453
              L   C +   PE A+ +  +M +K +RP++ T   L   +   G++   YE     S
Sbjct: 576 GTVLNGFCSSGLLPE-ALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYE---YLS 631

Query: 454 QVDSAKRINAIEMD-MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTY 512
           ++ S    N I  D  + N +   ++   NL KA         LI             TY
Sbjct: 632 KMIS----NGIIPDSFSYNTLIDGYLKEANLEKAF-------ILINEMEKRGLQFNIITY 680

Query: 513 NTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID 552
           N +L+      +   A ++ ++M   GI P+ ATY+ +I+
Sbjct: 681 NLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLIN 720



 Score = 45.1 bits (105), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 53/252 (21%), Positives = 104/252 (41%), Gaps = 22/252 (8%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           +  +++  CK G +++A NL   +  R  + P    YN+ +    K   M  A    D M
Sbjct: 505 FTTLIRGYCKDGNMDKALNLFEAM-VRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDM 563

Query: 185 DSRMVGKNEVTYTELLK----LAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRL 240
             + +  + ++Y  +L       +  + L+   ++ E  I+    ++ +    +  + R 
Sbjct: 564 IRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRP---NLVTCNTLIKGYCRS 620

Query: 241 RDLKSAYETLQHMVALAMMGKLY-INRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDV 299
            D+  AYE L  M++  ++   +  N   +G L+ + L+    L  +  M+     F+ +
Sbjct: 621 GDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFIL--INEMEKRGLQFNII 678

Query: 300 IH--------ACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVL 351
            +        A G+ Q    AEQ++ +M  +G+ P   TY   I   VS   ++      
Sbjct: 679 TYNLILNGFCAEGKMQE---AEQVLRKMIEIGINPDGATYSSLINGHVSQDNMKEAFRFH 735

Query: 352 KIMQQNNLKPQD 363
             M Q  L P D
Sbjct: 736 DEMLQRGLVPDD 747



 Score = 42.4 bits (98), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 71/351 (20%), Positives = 142/351 (40%), Gaps = 12/351 (3%)

Query: 90  FFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLG 149
           F  ++   AR+      +  +R ME   I  +N  Y +++   C+ G L +A  +   + 
Sbjct: 400 FSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEML 459

Query: 150 ERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNL 209
            R G +  +  YN+FL    K      A++  + M  R +  +  T+T L++      N+
Sbjct: 460 AR-GCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNM 518

Query: 210 SAVHEIWEDYIK-HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTS 268
                ++E  ++ +      +    +  F +  ++  A E    M+   ++       T 
Sbjct: 519 DKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTV 578

Query: 269 EGRLRSSRLDIPIPLNALPVM--KVLRWSF---SDVIHACGRTQNSGLAEQLMLQMQSLG 323
                SS L +P  LN    M  K +R +    + +I    R+ +   A + + +M S G
Sbjct: 579 LNGFCSSGL-LPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNG 637

Query: 324 LQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTI-ATLSVECSKALELDLA 382
           + P S +Y+  I   + +  L     ++  M++  L+    T    L+  C++    +  
Sbjct: 638 IIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAE 697

Query: 383 EALLDQISRCTNPK--PFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIR 430
           + L   I    NP    +S+ +    + D  + A +   +M Q+ L PD R
Sbjct: 698 QVLRKMIEIGINPDGATYSSLINGHVSQDNMKEAFRFHDEMLQRGLVPDDR 748


>gi|302142099|emb|CBI19302.3| unnamed protein product [Vitis vinifera]
          Length = 609

 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 91/396 (22%), Positives = 154/396 (38%), Gaps = 51/396 (12%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
            FS  +    +    G A +L+ +M++ G +P   TY+  I  I  +  L   ++ L  M
Sbjct: 84  GFSFYVQTTCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNM 143

Query: 355 QQNNLKPQDST-IATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPER 413
                +P   T    L   CS    +D AE LL  +                        
Sbjct: 144 PSYGCQPNVITHNIILRSMCSTGRWMD-AEKLLSDM------------------------ 178

Query: 414 AIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNI 473
                  +R+   P + T+ +L      +N    +G +   +D  ++       M  +  
Sbjct: 179 -------LRKGCSPSVVTFNIL------INFLCRQGLLGRAIDILEK-------MPMHGC 218

Query: 474 QHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLG----TPTYNTVLHSLVEAQESHRAM 529
             + +S   LL     E  +   I+Y  D     G      TYNT+L +L +  +   A+
Sbjct: 219 TPNSLSYNPLLHGFCKEKKMDRAIEYL-DIMVSRGCYPDIVTYNTLLTALCKDGKVDVAV 277

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
           EI  Q+ + G  P   TYN +ID  S +   + A  L+  M R G  P  +TY++L+  L
Sbjct: 278 EILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGL 337

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649
              G  DEA+     +   GI  + + YN+I+   C+  + D     +  M   + +P  
Sbjct: 338 SREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTE 397

Query: 650 STCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVS 685
           +T   +  G    G    A++ L  L  R L ++ S
Sbjct: 398 ATYTILIEGIAYEGLAKEALDLLNELCSRGLVKKSS 433



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 95/225 (42%), Gaps = 4/225 (1%)

Query: 466 MDMARNNIQHSHISMKN-LLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVE 521
           +D  RN      +   N L+  +  EG + E I++  +  +    P   T+N +L S+  
Sbjct: 105 LDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCS 164

Query: 522 AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMT 581
                 A ++   M   G  P+  T+NI+I+          A  ++  M   G  P +++
Sbjct: 165 TGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLS 224

Query: 582 YTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMH 641
           Y  L+         D A+  LD++   G   D++ YNT+L   C+ G++DV   I+ Q+ 
Sbjct: 225 YNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLS 284

Query: 642 QNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
                P   T + V  G    G    A++ L  +  + L  ++ T
Sbjct: 285 SKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIIT 329



 Score = 59.7 bits (143), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 65/286 (22%), Positives = 122/286 (42%), Gaps = 20/286 (6%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           AE+L+  M   G  PS  T++  I  +     L   +++L+ M  +   P   +   L  
Sbjct: 171 AEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLH 230

Query: 372 ECSKALELDLAEALLD-QISRCTNPK--PFSAFLAACDTMDKPERAIKIFAKMRQK-LRP 427
              K  ++D A   LD  +SR   P    ++  L A     K + A++I  ++  K   P
Sbjct: 231 GFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSP 290

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL 487
            + TY  +              +  S+V   +R   +  +M R  ++   I+  +L+  L
Sbjct: 291 VLITYNTVI-------------DGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGL 337

Query: 488 GAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNA 544
             EG + E I++F D +     P   TYN+++  L +++++ RA++    M +    P  
Sbjct: 338 SREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTE 397

Query: 545 ATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590
           ATY I+I+  +     K A  L++ +   G   ++        +LL
Sbjct: 398 ATYTILIEGIAYEGLAKEALDLLNELCSRGLVKKSSAEQVAAPVLL 443



 Score = 40.4 bits (93), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 56/269 (20%), Positives = 109/269 (40%), Gaps = 18/269 (6%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGE--RYGIYPILPVYNSFLGACAKLHSMVHANLCLD 182
           Y +++  +CK G L+EA   I FL     YG  P +  +N  L +       + A   L 
Sbjct: 120 YNVLINGICKEGRLDEA---IKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLS 176

Query: 183 LMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH-YSLSIFSLRKFVWSFTRLR 241
            M  +    + VT+  L+     Q  L    +I E    H  + +  S    +  F + +
Sbjct: 177 DMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEK 236

Query: 242 DLKSAYETLQHMVALAMMGKLYINRTSEGRL-RSSRLDIPIP-LNAL------PVMKVLR 293
            +  A E L  MV+      +    T    L +  ++D+ +  LN L      PV+    
Sbjct: 237 KMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVL---- 292

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
            +++ VI    +   +  A +L+ +M+  GL+P   TY   +  +  +  +   ++    
Sbjct: 293 ITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHD 352

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLA 382
           ++   ++P   T  ++ +   K+ + D A
Sbjct: 353 LEGLGIRPNAITYNSIMLGLCKSRQTDRA 381


>gi|168025874|ref|XP_001765458.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162683308|gb|EDQ69719.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 670

 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 89/473 (18%), Positives = 187/473 (39%), Gaps = 41/473 (8%)

Query: 225 LSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLN 284
           + + S+   VW   ++++  +A +  +   +  +    Y+  T    L   R        
Sbjct: 180 VDVRSMNVVVWQLGQMQNWYAATKVFRAFRSAGVEPNAYVCTTLIAALGCGR-------R 232

Query: 285 ALPVMKVLRW-----------SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDG 333
               +K+ RW           +F+ ++ ACGR  +   A +L  +M+ LG+ P   T+ G
Sbjct: 233 LSQALKLFRWMEKAGIERPIFTFNALMVACGRCASGDTAVELFEEMEKLGIVPDRITFTG 292

Query: 334 FIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALE----LDLAEALLDQI 389
            + A  +          + +MQ             +   C++A +      L + +L+Q 
Sbjct: 293 LVSATTAAGLWDRAQSFIDMMQARGFSIGLHEYIEMQWACARARKPREAYGLFQVMLEQG 352

Query: 390 SRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEE 448
                 + ++A L A +   + E A++ F  ++ K L PD+ ++  L S   N       
Sbjct: 353 YE-LKLESYNALLCAYERTAQWEDAMRTFIWIQDKGLTPDVMSWSSLISACANAG----- 406

Query: 449 GNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEG---MIRELIQYFCDSKT 505
                    A+R   +   M  ++ Q + +S   LLKA    G      E+     DS  
Sbjct: 407 --------QAERALEVLERMKTSDCQPNVVSWCGLLKAYQKTGNWEKAEEIFHAMLDSGC 458

Query: 506 PLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASA 565
           P     + ++L +  + ++  + +   ++++  G+  +   ++  I   +    ++ A  
Sbjct: 459 PPNEVAWCSLLSAYEKGRQWKKVLYTIEKLEELGMKLDVVAWSTTISALAKAGQWELAEE 518

Query: 566 LVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKAC 625
               M + G  P  +TY++LIK   D G +++A ++  L+   GI  +      +L+   
Sbjct: 519 KFKQMTKSGCLPNIVTYSSLIKAYGDVGLWEKAESVFKLMLRVGIRPNPQACCALLRAYG 578

Query: 626 EKGRIDVIEFIIEQMH-QNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSM 677
           +   ++ +    E M  Q  V+PD      +F     CG    A++ +  + M
Sbjct: 579 KGKELEKVIIFFESMEPQYGVEPDKYAYAAIFWACWTCGEWQRAVKYIDRMEM 631



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 82/384 (21%), Positives = 147/384 (38%), Gaps = 46/384 (11%)

Query: 66  GERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCY 125
           G   RA   +  +     S+G  ++  +   CAR+  P      +++M E+   L  + Y
Sbjct: 301 GLWDRAQSFIDMMQARGFSIGLHEYIEMQWACARARKPREAYGLFQVMLEQGYELKLESY 360

Query: 126 LLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMD 185
             ++ A  +    E+A     ++ ++ G+ P +  ++S + ACA       A   L+ M 
Sbjct: 361 NALLCAYERTAQWEDAMRTFIWIQDK-GLTPDVMSWSSLISACANAGQAERALEVLERMK 419

Query: 186 SRMVGKNEVTYTELL----KLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLR 241
           +     N V++  LL    K   W+K     H + +       ++  SL     ++ + R
Sbjct: 420 TSDCQPNVVSWCGLLKAYQKTGNWEKAEEIFHAMLDSGCPPNEVAWCSLLS---AYEKGR 476

Query: 242 DLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIH 301
             K    T++ +  L M                 +LD+               ++S  I 
Sbjct: 477 QWKKVLYTIEKLEELGM-----------------KLDVV--------------AWSTTIS 505

Query: 302 ACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGME-VLKIMQQNNLK 360
           A  +     LAE+   QM   G  P+  TY   I+A   D GL    E V K+M +  ++
Sbjct: 506 ALAKAGQWELAEEKFKQMTKSGCLPNIVTYSSLIKA-YGDVGLWEKAESVFKLMLRVGIR 564

Query: 361 PQDSTIATLSVECSKALELD----LAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIK 416
           P       L     K  EL+      E++  Q     +   ++A   AC T  + +RA+K
Sbjct: 565 PNPQACCALLRAYGKGKELEKVIIFFESMEPQYGVEPDKYAYAAIFWACWTCGEWQRAVK 624

Query: 417 IFAKMRQK-LRPDIRTYELLFSLF 439
              +M      PD   Y  L +++
Sbjct: 625 YIDRMEMAGCTPDSVIYTTLINMY 648



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 82/420 (19%), Positives = 168/420 (40%), Gaps = 49/420 (11%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           S + V+   G+ QN   A ++    +S G++P+++     I A+   R L   +++ + M
Sbjct: 184 SMNVVVWQLGQMQNWYAATKVFRAFRSAGVEPNAYVCTTLIAALGCGRRLSQALKLFRWM 243

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERA 414
           ++  ++    T   L V C                 RC          A+ DT      A
Sbjct: 244 EKAGIERPIFTFNALMVACG----------------RC----------ASGDT------A 271

Query: 415 IKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN-N 472
           +++F +M +  + PD  T+       G V+A    G ++ +  S      I+M  AR  +
Sbjct: 272 VELFEEMEKLGIVPDRITFT------GLVSATTAAG-LWDRAQSF-----IDMMQARGFS 319

Query: 473 IQ-HSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEI 531
           I  H +I M+              L Q   +    L   +YN +L +     +   AM  
Sbjct: 320 IGLHEYIEMQWACARARKPREAYGLFQVMLEQGYELKLESYNALLCAYERTAQWEDAMRT 379

Query: 532 FKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLD 591
           F  ++  G+ P+  +++ +I  C+     + A  ++  M      P  +++  L+K    
Sbjct: 380 FIWIQDKGLTPDVMSWSSLISACANAGQAERALEVLERMKTSDCQPNVVSWCGLLKAYQK 439

Query: 592 YGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR-IDVIEFIIEQMHQNKVQPDPS 650
            G++++A  +   +   G P + + + ++L  A EKGR    + + IE++ +  ++ D  
Sbjct: 440 TGNWEKAEEIFHAMLDSGCPPNEVAWCSLL-SAYEKGRQWKKVLYTIEKLEELGMKLDVV 498

Query: 651 TCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDFEDLILAEDSEAESRIL 710
                 S     G    A E  + ++       + T       + D+ L E +E+  +++
Sbjct: 499 AWSTTISALAKAGQWELAEEKFKQMTKSGCLPNIVTYSSLIKAYGDVGLWEKAESVFKLM 558


>gi|451798817|gb|AGF69112.1| PPR [Raphanus sativus]
          Length = 479

 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 81/368 (22%), Positives = 154/368 (41%), Gaps = 32/368 (8%)

Query: 325 QPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEA 384
           +P+  T+   +  +  +  +   + +L  M ++ L+P   T  T+     K  +   A  
Sbjct: 78  KPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALN 137

Query: 385 LLDQISRCTNPKP----FSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLF 439
           LL ++   ++ KP    +SA +       +   A  +F +M+ K + PDI TY  + + F
Sbjct: 138 LLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGF 197

Query: 440 GNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMI---REL 496
            + +  + E     Q            +M    I    ++   L+ AL  EG +   ++L
Sbjct: 198 CS-SGKWSEAQRLLQ------------EMLVRKISPDVVTFSGLINALVKEGDLNSAQDL 244

Query: 497 IQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTC-----------GIPPNAA 545
           +Q    S       T NT+L  L ++ +   A+E+FK M+             G+ P+  
Sbjct: 245 LQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQ 304

Query: 546 TYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLV 605
           TYNI+I        F  A  L   M   G  P T+TY+++I  L      DEA  + D +
Sbjct: 305 TYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSM 364

Query: 606 SLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFH 665
             +    +++ +NT++   C+ G +D    +  +M +  +  +  T   +  G+   G  
Sbjct: 365 GSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAITYITLIRGFRKVGNI 424

Query: 666 NSAMEALQ 673
           N +++  Q
Sbjct: 425 NGSLDIFQ 432



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 74/303 (24%), Positives = 134/303 (44%), Gaps = 29/303 (9%)

Query: 398 FSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDS 457
           F+  L      D+   A+ +F +M    +P++ T+  L      +N    EG +   V  
Sbjct: 53  FNTLLHGLCVEDRVSEALDLFHQM---CKPNVVTFTTL------MNGLCREGRVVEAVAL 103

Query: 458 AKRINAIEMDMARNNIQHSHI--SMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTV 515
             R+  +E  +  N I +  I   M  +   + A  ++R++ +    S        Y+ +
Sbjct: 104 LDRM--VEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEL---SHIKPDVVIYSAI 158

Query: 516 LHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC-CSIIRCFKSASALVSMMVRDG 574
           +  L +      A  +F +M+  GI P+  TY+ MI+  CS  +  ++   L  M+VR  
Sbjct: 159 IDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRK- 217

Query: 575 FYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI-DVI 633
             P  +T++ LI  L+  GD + A +LL  +   G+  +V+  NT+L   C+ G++ D +
Sbjct: 218 ISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDAL 277

Query: 634 EFI---------IEQMHQ-NKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEE 683
           E           I+  H  N V+PD  T + + SG +N G    A E  + +  R +  +
Sbjct: 278 EMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPD 337

Query: 684 VST 686
             T
Sbjct: 338 TVT 340



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 69/313 (22%), Positives = 127/313 (40%), Gaps = 37/313 (11%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A+ L ++MQ  G+ P   TY   I    S         +L+ M    + P   T + L  
Sbjct: 171 AQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLIN 230

Query: 372 ECSKALELDLAEALLDQI---SRCTNPKPFSAFL-AACDTMDKPERAIKIFAKMRQKL-- 425
              K  +L+ A+ LL ++     C N    +  L   CD+  K + A+++F  M++ +  
Sbjct: 231 ALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDS-GKLKDALEMFKAMQKSMMD 289

Query: 426 ----------RPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM--DMARNNI 473
                      PD++TY +L S                 ++  K + A E+  +M    I
Sbjct: 290 IDATHAFNGVEPDVQTYNILIS---------------GLINEGKFLEAEELYEEMPHRGI 334

Query: 474 QHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAME 530
               ++  +++  L  +  + E  Q F    +   +P   T+NT++    +A      +E
Sbjct: 335 VPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLE 394

Query: 531 IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590
           +F +M   GI  NA TY  +I     +     +  +   M+  G YP T+T   ++  L 
Sbjct: 395 LFCEMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQEMISSGVYPDTITIRNMLTGLW 454

Query: 591 DYGDFDEALNLLD 603
              +  +AL +L+
Sbjct: 455 SKEELKKALAMLE 467



 Score = 47.4 bits (111), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 79/388 (20%), Positives = 158/388 (40%), Gaps = 51/388 (13%)

Query: 111 RMMEEKEIGL--NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGAC 168
           RM+E+   GL  N   Y  ++  +CK G    A NL+  + E   I P + +Y++ +   
Sbjct: 106 RMVED---GLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGL 162

Query: 169 AKLHSMVHA-NLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWED-YIKHYSLS 226
            K      A NL +++ D + +  + VTY+ ++         S    + ++  ++  S  
Sbjct: 163 WKDGRHTDAQNLFIEMQD-KGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPD 221

Query: 227 IFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYI-NRTSEGRLRSSRLDIPIPLNA 285
           + +    + +  +  DL SA + LQ M++  +   +   N   +G   S +L      +A
Sbjct: 222 VVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLK-----DA 276

Query: 286 LPVMKVLRWSFSDV--IHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRG 343
           L + K ++ S  D+   HA                    G++P   TY+  I  ++++  
Sbjct: 277 LEMFKAMQKSMMDIDATHAFN------------------GVEPDVQTYNILISGLINEGK 318

Query: 344 LRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI-SRCTNPK--PFSA 400
                E+ + M    + P   T +++     K   LD A  + D + S+  +P    F+ 
Sbjct: 319 FLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNT 378

Query: 401 FLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAK 459
            +         +  +++F +M R+ +  +  TY  L   F  V      GN+   +D   
Sbjct: 379 LITGYCKAGMVDDGLELFCEMGRRGIVANAITYITLIRGFRKV------GNINGSLD--- 429

Query: 460 RINAIEMDMARNNIQHSHISMKNLLKAL 487
               I  +M  + +    I+++N+L  L
Sbjct: 430 ----IFQEMISSGVYPDTITIRNMLTGL 453



 Score = 45.1 bits (105), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 67/137 (48%), Gaps = 10/137 (7%)

Query: 540 IPPNAATYNIMIDC-CSIIRCFKSASALVSM--MVRDGFYPQTMTYTALIKILLDYGDFD 596
           IP +  ++NI+I C CS   C K   AL +   + + GF+P  +T+  L+  L       
Sbjct: 11  IPCDIYSFNILIKCFCS---CSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVS 67

Query: 597 EALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVF 656
           EAL+L      +    +V+ + T++   C +GR+     ++++M ++ +QP+  T   + 
Sbjct: 68  EALDLFH----QMCKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIV 123

Query: 657 SGYVNCGFHNSAMEALQ 673
            G    G   SA+  L+
Sbjct: 124 DGMCKMGDTVSALNLLR 140


>gi|302761054|ref|XP_002963949.1| hypothetical protein SELMODRAFT_166434 [Selaginella moellendorffii]
 gi|300167678|gb|EFJ34282.1| hypothetical protein SELMODRAFT_166434 [Selaginella moellendorffii]
          Length = 1365

 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 87/407 (21%), Positives = 171/407 (42%), Gaps = 34/407 (8%)

Query: 289 MKVLRWSFSD------VIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDR 342
           + V RW   +      ++   GR    GLA++L  + +S  +      Y+  +       
Sbjct: 81  LNVARWYAPNPRMLAVMLSVLGRANQPGLAQELFDRAES-SIGNCVQVYNSLMSVYARHG 139

Query: 343 GLRNGMEVLKIMQQNNLKPQDSTI-ATLSVECSKALELDLAEALLDQISRCTNPKP---- 397
              +  ++L  MQ    +P   T    +       ++  LA +LL  +      +P    
Sbjct: 140 DWNSVQQLLCRMQDRGCRPDLVTFNIVIKARTRGGMQEGLASSLLQDVY-AAGLRPDTIT 198

Query: 398 FSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVD 456
           ++  ++AC   ++   AI IF +M RQ   PDI TY  + S++G             +V+
Sbjct: 199 YNTLISACSLNNRLSDAILIFEEMQRQGCDPDIWTYNAMISVYGRAG----------RVE 248

Query: 457 SAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQY---FCDSKTPLGTPTYN 513
           +A  I  I   M         ++  ++L A   +G I E+ +      D++      TYN
Sbjct: 249 AASSIFRI---MQEQGFTPDAVTYNSVLHAFARDGRIEEVERIRGMMRDARCSSDEITYN 305

Query: 514 TVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRD 573
           T++H   +A    +A E++ QMK  G  P++ T+ ++ID          A+A+   M++ 
Sbjct: 306 TMIHMYGKAGMHRKAEELYVQMKEEGRCPDSVTFTVLIDTLGKAGFVNEAAAMFEDMLKS 365

Query: 574 GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVI 633
              P    ++A+I        F +A +    +   G+  D+L Y+ +L    + G  +  
Sbjct: 366 QVRPTLQAFSAMICAYAKADMFTDAEHTYSCMLRAGVRPDLLAYSVMLDVFFKAGMPEKC 425

Query: 634 EFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRML 680
             + + M  + ++P+ S    V++  V   +  S++  ++ LS  M+
Sbjct: 426 IILYKAMVGSGLKPELS----VYAIMVRVFYQKSSVAEIENLSKEMV 468



 Score = 75.9 bits (185), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 87/381 (22%), Positives = 142/381 (37%), Gaps = 49/381 (12%)

Query: 299 VIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNN 358
           +I + G+ +    AE +   +Q  G   ++  Y   + A             L  M    
Sbjct: 652 IIASYGKLKLWQNAEIVFRDLQQHGFAGNTSAYSALLSAYAETGNFERATRALDNMVAAG 711

Query: 359 LKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIF 418
           L+P  +                 A  +L+   R    K  S F         PE  I   
Sbjct: 712 LQPNATC----------------ANYVLEAFGRAGKAKEISEFFQRL-----PEMGIS-- 748

Query: 419 AKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSA---KRINAIEMDMARNNIQH 475
                   P+ RT+ ++F  F       E  +M+ Q+  A     I   +  +A  + + 
Sbjct: 749 --------PNSRTFVVIFHAFSRNGNLEEARSMYRQMKEAGFSPSIQVFKALLALYSRET 800

Query: 476 SHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHR-AMEIFKQ 534
             I  + L+K +   G+              L    YN ++ SL     S+R A  +FK 
Sbjct: 801 VEIDAEELVKDIKKAGL-------------ELDIDIYNHMI-SLYSKLGSYRNAALVFKG 846

Query: 535 MKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGD 594
           M+  G  P+A T+N +I   S  +  + A AL+  M++ G  P   TYT LI        
Sbjct: 847 MQEIGCSPDATTFNTLIMLYSRNQMVQEAQALLREMIKTGNAPNISTYTTLISAYGRLQA 906

Query: 595 FDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHF 654
           +++A  +   ++  G   D   YN ++    + G    IE IIEQM  +  +P  +T H 
Sbjct: 907 YEDAELVFKSIAETGCKPDATAYNVMINVYRKAGEHRKIEEIIEQMKVDGFEPSLTTIHM 966

Query: 655 VFSGYVNCGFHNSAMEALQVL 675
           +   Y   G    A E L+ L
Sbjct: 967 LMDSYGKGGATGKAEEVLETL 987


>gi|226493231|ref|NP_001140656.1| hypothetical protein [Zea mays]
 gi|194700420|gb|ACF84294.1| unknown [Zea mays]
 gi|414587025|tpg|DAA37596.1| TPA: hypothetical protein ZEAMMB73_567962 [Zea mays]
          Length = 598

 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 93/209 (44%), Gaps = 3/209 (1%)

Query: 468 MARNNIQHSHISMKNLLKALGAEGMI---RELIQYFCDSKTPLGTPTYNTVLHSLVEAQE 524
           M     + ++++   ++ A+  EG +   REL+           T  YNTVL      + 
Sbjct: 224 MRAEGCEPNNVTYNVIIDAMCREGDVDQARELLNSLPSRGCKPNTVNYNTVLKGFCSIER 283

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
              A EI  +M     PPN AT N++I+        +  +  +  M + G     +TY A
Sbjct: 284 WVDADEILDEMVRENCPPNEATLNVIINTLCRKGLLQKVTLYLEKMSKHGCTANVVTYNA 343

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
           +I  + + G+ D AL LL  +   G   D++ YNT+LK  C   R +  E ++ +M QN 
Sbjct: 344 VISGMCEQGNVDSALELLSNMQSFGCKPDIVTYNTVLKGLCSADRWEDAEELMIKMSQND 403

Query: 645 VQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
             PD ST + + S +   G    A E  +
Sbjct: 404 RLPDNSTFNTIISFWCQKGLILQAFEVFK 432



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 95/422 (22%), Positives = 175/422 (41%), Gaps = 46/422 (10%)

Query: 294 WSFSDVIHA-CGRTQNSGLAEQLML--QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEV 350
           ++ + +IHA C R +   +A+ L++   M   G  P   TY+  ++A    RG R  +E+
Sbjct: 164 YAHNPLIHALCERGR---VADALVVLDGMLCRGCAPDVVTYNILLQAACKGRGYRQALEL 220

Query: 351 LKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI-SRCTNPKP--FSAFLAACDT 407
           +  M+    +P + T   +     +  ++D A  LL+ + SR   P    ++  L    +
Sbjct: 221 IDFMRAEGCEPNNVTYNVIIDAMCREGDVDQARELLNSLPSRGCKPNTVNYNTVLKGFCS 280

Query: 408 MDKPERAIKIFAKM-RQKLRPDIRTYELLFSLF--------------------------- 439
           +++   A +I  +M R+   P+  T  ++ +                             
Sbjct: 281 IERWVDADEILDEMVRENCPPNEATLNVIINTLCRKGLLQKVTLYLEKMSKHGCTANVVT 340

Query: 440 --GNVNAPYEEGNMFSQVDSA-KRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIREL 496
               ++   E+GN    VDSA + ++ ++    + +I   +  +K L  A   E     +
Sbjct: 341 YNAVISGMCEQGN----VDSALELLSNMQSFGCKPDIVTYNTVLKGLCSADRWEDAEELM 396

Query: 497 IQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSI 556
           I+   + + P  + T+NT++    +     +A E+FKQM   G  PN+ TY+ +I   + 
Sbjct: 397 IKMSQNDRLPDNS-TFNTIISFWCQKGLILQAFEVFKQMPEKGCNPNSTTYSTIIGGLTK 455

Query: 557 IRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLL 616
               + A  L++ M   GF    M Y  L + L      +E + ++  +   GI    +L
Sbjct: 456 AGKMEQALELLNEMANKGFNTDKM-YRVLTESLNKEDKIEEVVQVVHKLQDSGISPQTVL 514

Query: 617 YNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
           YNT+L   C  G+ D    ++  M      PD ST   +  G    G+   A E L  L 
Sbjct: 515 YNTVLLGLCRNGKTDYAIDVLADMVSCGCMPDESTYIILIEGLFYEGYSKEARELLSRLC 574

Query: 677 MR 678
            R
Sbjct: 575 SR 576



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 80/200 (40%), Gaps = 13/200 (6%)

Query: 484 LKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPN 543
           L AL   G +   ++    S  P   P  N ++  L       R  +  + ++ CG    
Sbjct: 71  LSALIHRGDLDAALRLVGSSPRPPDVPLANRLVRDLCR---RGRPADAARVVEACGPEAT 127

Query: 544 AATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLD 603
           AATY  ++D        + A  +V  M           +  LI  L + G   +AL +LD
Sbjct: 128 AATYGALVDGYCRAGLLEDARRVVGGMPAHVQASSAYAHNPLIHALCERGRVADALVVLD 187

Query: 604 LVSLEGIPHDVLLYNTILKKACEKGR-----IDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
            +   G   DV+ YN +L+ AC KGR     +++I+F    M     +P+  T + +   
Sbjct: 188 GMLCRGCAPDVVTYNILLQAAC-KGRGYRQALELIDF----MRAEGCEPNNVTYNVIIDA 242

Query: 659 YVNCGFHNSAMEALQVLSMR 678
               G  + A E L  L  R
Sbjct: 243 MCREGDVDQARELLNSLPSR 262


>gi|356497979|ref|XP_003517833.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 595

 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 85/403 (21%), Positives = 157/403 (38%), Gaps = 26/403 (6%)

Query: 281 IPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVS 340
           + +   P +K     F  V     + ++   A  L+  M  +G++P+  T++  I  +  
Sbjct: 70  VTMKPFPCVKDFNLLFGIV----AKMKHYTTAISLIKHMSYIGVKPNVPTHNIVINCLCR 125

Query: 341 DRGLRNGMEVLKIMQQNNLKPQDSTIAT----LSVECSKALELDLAEALLDQISRCTNPK 396
                 G  VL +M +  ++P   T  T    L VE + A  +   + L D +   ++  
Sbjct: 126 LNHTVFGFSVLGLMFKIGVEPSIVTFTTIVNGLCVEGNVAQAIRFVDHLKD-MGYESDRY 184

Query: 397 PFSAFLAACDTMDKPERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQV 455
              A +     +     A+    KM  Q    D+  Y  +          +E  ++FSQ 
Sbjct: 185 TRGAIINGLCKVGHSSAALSYLKKMEEQNCNLDVTAYNAVVDGLCKDGMVFEAWDLFSQ- 243

Query: 456 DSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TY 512
                       M    IQ    +   L+  L      +E      +       P   T+
Sbjct: 244 ------------MTGKGIQPDLFTYNCLIHGLCNFDRWKEAAPLLANMMRKGIMPDVQTF 291

Query: 513 NTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVR 572
           N +    ++     RA  IF  M   GI  +  TY+ +I    ++   K A  +  +M+R
Sbjct: 292 NVIGGRFLKTGMISRAKSIFSFMGHMGIEHDVVTYSSIIGVHCMLNQMKDAMEVFDLMIR 351

Query: 573 DGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDV 632
            G  P  +TYT+LI    +  + ++A+  L  +   G+  +++ +NT++   C+ G+   
Sbjct: 352 KGCLPNIVTYTSLIHGWCEIKNMNKAMYFLGEMVNNGLDPNIVTWNTLIGGFCKAGKPVA 411

Query: 633 IEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
            + +   MH++   PD  TC  +  G   C FH+ AM   + L
Sbjct: 412 AKELFFVMHKHGQLPDLQTCAIILDGLFKCHFHSEAMSLFREL 454



 Score = 59.3 bits (142), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 70/387 (18%), Positives = 149/387 (38%), Gaps = 24/387 (6%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +F+ +++      N   A + +  ++ +G +   +T    I  +         +  LK M
Sbjct: 150 TFTTIVNGLCVEGNVAQAIRFVDHLKDMGYESDRYTRGAIINGLCKVGHSSAALSYLKKM 209

Query: 355 QQNNLKPQDSTIATLSVE--CSKALELDLAEALLDQISRCTNPKPFS--AFLAACDTMDK 410
           ++ N    D T     V+  C   +  +  +       +   P  F+    +      D+
Sbjct: 210 EEQNCN-LDVTAYNAVVDGLCKDGMVFEAWDLFSQMTGKGIQPDLFTYNCLIHGLCNFDR 268

Query: 411 PERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
            + A  + A M R+ + PD++T+ ++             G  F +     R  +I   M 
Sbjct: 269 WKEAAPLLANMMRKGIMPDVQTFNVI-------------GGRFLKTGMISRAKSIFSFMG 315

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLG----TPTYNTVLHSLVEAQES 525
              I+H  ++  +++        +++ ++ F D     G      TY +++H   E +  
Sbjct: 316 HMGIEHDVVTYSSIIGVHCMLNQMKDAMEVF-DLMIRKGCLPNIVTYTSLIHGWCEIKNM 374

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
           ++AM    +M   G+ PN  T+N +I          +A  L  +M + G  P   T   +
Sbjct: 375 NKAMYFLGEMVNNGLDPNIVTWNTLIGGFCKAGKPVAAKELFFVMHKHGQLPDLQTCAII 434

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           +  L       EA++L   +       D+++Y+ IL   C  G+++    +   +    V
Sbjct: 435 LDGLFKCHFHSEAMSLFRELEKMNSDLDIIIYSIILNGMCSSGKLNDALELFSYLSSKGV 494

Query: 646 QPDPSTCHFVFSGYVNCGFHNSAMEAL 672
           + D  T + + +G    G  + A + L
Sbjct: 495 KIDVVTYNIMINGLCKEGLLDDAEDLL 521



 Score = 45.1 bits (105), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 67/312 (21%), Positives = 124/312 (39%), Gaps = 37/312 (11%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A  L  QM   G+QP   TY+  I  + +    +    +L  M +  + P   T   +  
Sbjct: 237 AWDLFSQMTGKGIQPDLFTYNCLIHGLCNFDRWKEAAPLLANMMRKGIMPDVQTFNVIGG 296

Query: 372 ECSKALELDLAEALLDQISRCT---NPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLRP 427
              K   +  A+++   +       +   +S+ +     +++ + A+++F  M R+   P
Sbjct: 297 RFLKTGMISRAKSIFSFMGHMGIEHDVVTYSSIIGVHCMLNQMKDAMEVFDLMIRKGCLP 356

Query: 428 DIRTYELLFSLF---GNVN-APYEEGNMFSQ----------------VDSAKRINAIEMD 467
           +I TY  L   +    N+N A Y  G M +                   + K + A E+ 
Sbjct: 357 NIVTYTSLIHGWCEIKNMNKAMYFLGEMVNNGLDPNIVTWNTLIGGFCKAGKPVAAKELF 416

Query: 468 MARN------NIQHSHISMKNLLKA-LGAEGM--IRELIQYFCDSKTPLGTPTYNTVLHS 518
              +      ++Q   I +  L K    +E M   REL +   D    L    Y+ +L+ 
Sbjct: 417 FVMHKHGQLPDLQTCAIILDGLFKCHFHSEAMSLFRELEKMNSD----LDIIIYSIILNG 472

Query: 519 LVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQ 578
           +  + + + A+E+F  + + G+  +  TYNIMI+          A  L+  M  +G  P 
Sbjct: 473 MCSSGKLNDALELFSYLSSKGVKIDVVTYNIMINGLCKEGLLDDAEDLLMKMEENGCPPD 532

Query: 579 TMTYTALIKILL 590
             TY   ++ LL
Sbjct: 533 ECTYNVFVQGLL 544


>gi|255584314|ref|XP_002532893.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527353|gb|EEF29498.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 625

 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 83/166 (50%), Gaps = 12/166 (7%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TYNT++    +    + A+ +  +M+  GI P+  TYN      S+I  F     +   M
Sbjct: 237 TYNTLISLYCKKGMHYEALSVQDRMEREGIKPDIVTYN------SLIHGFCKEGRMREAM 290

Query: 571 -----VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKAC 625
                +RD   P  +TYT LI       D D+AL L + +  +G+   V+ YN+IL+K C
Sbjct: 291 RLFKEIRDAT-PNHVTYTTLIDGYCRLNDLDQALRLREEMEAQGLYPTVVTYNSILRKLC 349

Query: 626 EKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEA 671
           E GRI     ++ +M + K++PD  TC+ + + Y   G   SA++ 
Sbjct: 350 EIGRIRDANKLLNEMSEKKIEPDNVTCNTLINAYCKIGDMKSALKV 395



 Score = 79.3 bits (194), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 73/343 (21%), Positives = 141/343 (41%), Gaps = 24/343 (6%)

Query: 327 SSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALL 386
           +SH +   +    + +  +  ++V + M  N  +P       L    +K    D+   + 
Sbjct: 129 NSHVFSWLVIVYANTKMKQEAIQVFEHMMVNGFRPHLHACTVLLNSLAKDRLTDMVWKVY 188

Query: 387 DQISRC---TNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNV 442
            +++R     N   ++  + AC      E+A  + ++M  K + PD+ TY  L SL+   
Sbjct: 189 KKMARIGVEANIHVYNVLIHACCKSGDVEKADNLLSEMESKCVFPDLFTYNTLISLYCKK 248

Query: 443 NAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCD 502
              YE               +++  M R  I+   ++  +L+     EG +RE ++ F +
Sbjct: 249 GMHYEAL-------------SVQDRMEREGIKPDIVTYNSLIHGFCKEGRMREAMRLFKE 295

Query: 503 SKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYN-IMIDCCSIIR 558
            +    TP   TY T++       +  +A+ + ++M+  G+ P   TYN I+   C I R
Sbjct: 296 IRD--ATPNHVTYTTLIDGYCRLNDLDQALRLREEMEAQGLYPTVVTYNSILRKLCEIGR 353

Query: 559 CFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYN 618
             + A+ L++ M      P  +T   LI      GD   AL + + +   G+  D   Y 
Sbjct: 354 -IRDANKLLNEMSEKKIEPDNVTCNTLINAYCKIGDMKSALKVKNRMVEAGLKLDQFTYK 412

Query: 619 TILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVN 661
            ++   C+   +D  + ++  M      P   T  ++  GY N
Sbjct: 413 ALIHGFCKIREMDGAKELLLSMLDAGFSPSYCTYSWLVDGYCN 455



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 86/412 (20%), Positives = 168/412 (40%), Gaps = 27/412 (6%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           FS ++     T+    A Q+   M   G +P  H     + ++  DR      +V K M 
Sbjct: 133 FSWLVIVYANTKMKQEAIQVFEHMMVNGFRPHLHACTVLLNSLAKDRLTDMVWKVYKKMA 192

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQI-SRCTNPKPFS--AFLAACDTMDKPE 412
           +  ++        L   C K+ +++ A+ LL ++ S+C  P  F+    ++         
Sbjct: 193 RIGVEANIHVYNVLIHACCKSGDVEKADNLLSEMESKCVFPDLFTYNTLISLYCKKGMHY 252

Query: 413 RAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAK------------ 459
            A+ +  +M R+ ++PDI TY  L   F       E   +F ++  A             
Sbjct: 253 EALSVQDRMEREGIKPDIVTYNSLIHGFCKEGRMREAMRLFKEIRDATPNHVTYTTLIDG 312

Query: 460 --RINAIEM------DMARNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLG 508
             R+N ++       +M    +  + ++  ++L+ L   G IR+   L+    + K    
Sbjct: 313 YCRLNDLDQALRLREEMEAQGLYPTVVTYNSILRKLCEIGRIRDANKLLNEMSEKKIEPD 372

Query: 509 TPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVS 568
             T NT++++  +  +   A+++  +M   G+  +  TY  +I     IR    A  L+ 
Sbjct: 373 NVTCNTLINAYCKIGDMKSALKVKNRMVEAGLKLDQFTYKALIHGFCKIREMDGAKELLL 432

Query: 569 MMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
            M+  GF P   TY+ L+    +  + +  L L D    +G+  D  LY  ++++ C++ 
Sbjct: 433 SMLDAGFSPSYCTYSWLVDGYCNQQNEEAVLKLPDEFVRKGLCVDKSLYRALIRRFCKRE 492

Query: 629 RIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRML 680
           ++D  + I   M +     D      +   Y   G  N+A + L  +  R L
Sbjct: 493 QVDYAKKIFSLMQEKGTLGDSVIYTSLAYAYWKLGKANAASDLLDEMYKRRL 544



 Score = 42.0 bits (97), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 84/432 (19%), Positives = 170/432 (39%), Gaps = 59/432 (13%)

Query: 93  ILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERY 152
           +LN  A+      V + ++ M    +  N   Y +++ A CK G +E+A NL+  + E  
Sbjct: 171 LLNSLAKDRLTDMVWKVYKKMARIGVEANIHVYNVLIHACCKSGDVEKADNLLSEM-ESK 229

Query: 153 GIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAV 212
            ++P L  YN+ +    K      A    D M+   +  + VTY  L+     +  +   
Sbjct: 230 CVFPDLFTYNTLISLYCKKGMHYEALSVQDRMEREGIKPDIVTYNSLIHGFCKEGRMREA 289

Query: 213 HEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA----------------L 256
             ++++ I+  + +  +    +  + RL DL  A    + M A                L
Sbjct: 290 MRLFKE-IRDATPNHVTYTTLIDGYCRLNDLDQALRLREEMEAQGLYPTVVTYNSILRKL 348

Query: 257 AMMGKL-----YINRTSEGRLRSSRLDIPIPLN----------ALPV--------MKVLR 293
             +G++      +N  SE ++    +     +N          AL V        +K+ +
Sbjct: 349 CEIGRIRDANKLLNEMSEKKIEPDNVTCNTLINAYCKIGDMKSALKVKNRMVEAGLKLDQ 408

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           +++  +IH   + +    A++L+L M   G  PS  TY   +    + +     +++   
Sbjct: 409 FTYKALIHGFCKIREMDGAKELLLSMLDAGFSPSYCTYSWLVDGYCNQQNEEAVLKLPDE 468

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAE---ALLDQISRCTNPKPFSAFLAACDTMDK 410
             +  L    S    L     K  ++D A+   +L+ +     +   +++   A   + K
Sbjct: 469 FVRKGLCVDKSLYRALIRRFCKREQVDYAKKIFSLMQEKGTLGDSVIYTSLAYAYWKLGK 528

Query: 411 PERAIKIFAKM-RQKLRPDIRTYELL----------FSLFGN--VNAPYEEGNM-FSQVD 456
              A  +  +M +++L   ++ Y  L           SLF N  V APY    +  + VD
Sbjct: 529 ANAASDLLDEMYKRRLMITLKIYRALNASYAGDNSILSLFWNHVVAAPYSSSQLVMAYVD 588

Query: 457 -SAKRINAIEMD 467
            + KRI ++ ++
Sbjct: 589 WTNKRITSVHVE 600


>gi|125561476|gb|EAZ06924.1| hypothetical protein OsI_29163 [Oryza sativa Indica Group]
          Length = 687

 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 88/402 (21%), Positives = 152/402 (37%), Gaps = 55/402 (13%)

Query: 270 GRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSH 329
           G LR    D   P NA        +S++ VI    R    G A ++  +M    + P+  
Sbjct: 181 GMLRRMGRDGAPPPNA--------FSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHI 232

Query: 330 TYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI 389
           TY+  I   +    L  G  +   M  + LKP   T   L     +A  +    ALLD++
Sbjct: 233 TYNTMIDGHIKGGDLEAGFSLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEM 292

Query: 390 SRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEG 449
           +                                QK+ PD  TY +LF             
Sbjct: 293 AS-------------------------------QKMVPDGFTYSILF------------- 308

Query: 450 NMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMI---RELIQYFCDSKTP 506
           +  S+   +K + ++     +N +     +   LL  L  +G +    E++Q   ++   
Sbjct: 309 DGLSRNGDSKAMLSLFGKSLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLV 368

Query: 507 LGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASAL 566
                YNT+++   +  E   A   F QMK+  I P+  TYN +I+         +A  L
Sbjct: 369 PTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDL 428

Query: 567 VSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE 626
           +  M  +G  P   T+  LI      G  ++   +L  +   G+  +V+ Y +I+   C+
Sbjct: 429 LMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCK 488

Query: 627 KGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSA 668
            G+I     I++ M    V P+    + +   YV  G ++ A
Sbjct: 489 NGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQA 530



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 97/456 (21%), Positives = 177/456 (38%), Gaps = 42/456 (9%)

Query: 228 FSLRKFVWSFTRLRDLKSAYETLQHMVALAMM-GKLYINRTSEGRLRSSRLDIPIPLNAL 286
           FS    +    R      A E    M   A++   +  N   +G ++   L+    L   
Sbjct: 197 FSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFSLRDQ 256

Query: 287 PVMKVLR---WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRG 343
            V   L+    +++ ++    R    G    L+ +M S  + P     DGF  +I+ D  
Sbjct: 257 MVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVP-----DGFTYSILFDGL 311

Query: 344 LRNG-----MEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI-------SR 391
            RNG     + +     +N +   D T + L     K  ++ +AE +L  +       +R
Sbjct: 312 SRNGDSKAMLSLFGKSLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTR 371

Query: 392 CTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGN 450
                  + +   C T +  E A   F +M+ + ++PD  TY  L              N
Sbjct: 372 VIYNTLINGY---CQTGEL-EGAFSTFGQMKSRHIKPDHITYNALI-------------N 414

Query: 451 MFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP 510
              + +       + M+M  N +  +  +   L+ A G  G + +      + +     P
Sbjct: 415 GLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKP 474

Query: 511 ---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALV 567
              +Y +++++  +  +   A+ I   M    + PNA  YN +ID          A  LV
Sbjct: 475 NVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILV 534

Query: 568 SMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEK 627
             M  +G  P  +TY  LIK L +     EA  +++ +S   +  D + YNT++   C +
Sbjct: 535 EKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYR 594

Query: 628 GRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
           G ID    + ++MH+  ++    T H + SG    G
Sbjct: 595 GNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAG 630



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 103/551 (18%), Positives = 203/551 (36%), Gaps = 68/551 (12%)

Query: 129 MQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRM 188
           +QA    G L EA  ++  +G      P    YN  +    +      A    D M  R 
Sbjct: 167 VQACVAAGDLGEAVGMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERA 226

Query: 189 VGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH-YSLSIFSLRKFVWSFTRLRDLKSAY 247
           V  N +TY  ++   +   +L A   + +  + H    +  +    +    R   +    
Sbjct: 227 VLPNHITYNTMIDGHIKGGDLEAGFSLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETS 286

Query: 248 ETLQHMVALAMM--GKLY------INRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDV 299
             L  M +  M+  G  Y      ++R  + +   S     +  N + +     ++ S +
Sbjct: 287 ALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKSLK-NGVTIGD---YTCSIL 342

Query: 300 IHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNL 359
           ++   +     +AE+++  + + GL P+   Y+  I        L         M+  ++
Sbjct: 343 LNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHI 402

Query: 360 KPQDSTIATLSVECSKALELDLAEALLDQI-SRCTNP--KPFSAFLAACDTMDKPERAIK 416
           KP   T   L     KA  +  A+ LL ++     NP  + F+  + A     + E+   
Sbjct: 403 KPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFI 462

Query: 417 IFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQH 475
           + ++M++  L+P++ +Y  +      VNA  + G +   V       AI  DM   ++  
Sbjct: 463 VLSEMQENGLKPNVVSYGSI------VNAFCKNGKIPEAV-------AILDDMFHKDVLP 509

Query: 476 SHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIF 532
           +      ++ A    G   +   L++    +       TYN ++  L    +   A EI 
Sbjct: 510 NAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEII 569

Query: 533 KQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDY 592
             +    + P+A +YN +I  C    C++                               
Sbjct: 570 NSLSNHRLIPDAVSYNTLISAC----CYR------------------------------- 594

Query: 593 GDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTC 652
           G+ D+AL+L   +   GI   V  Y+ ++      GR+  +E++ ++M QN V P  +  
Sbjct: 595 GNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLIEMEYLYQKMMQNNVVPSNAIH 654

Query: 653 HFVFSGYVNCG 663
           + +   Y   G
Sbjct: 655 NIMVEAYSKYG 665


>gi|449476143|ref|XP_004154653.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g01110-like [Cucumis sativus]
          Length = 749

 Score = 80.1 bits (196), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 88/396 (22%), Positives = 161/396 (40%), Gaps = 37/396 (9%)

Query: 293 RWSFSDVIHACG-------RTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLR 345
           R   S  I+AC        RT    LA ++  ++   G++ + +T +  + A+  DR   
Sbjct: 215 RKGVSVSINACNKLLGGLVRTGWVDLAWEIYGEVVRGGIELNVYTLNIMVNALCKDRKFE 274

Query: 346 NGMEVLKIMQQNNLKPQDSTIATL-SVECSKALELDLAEALLDQISRCTNPK--PFSAFL 402
           N M  L  M+   +     T  TL +  C + L  +  + L    SR   P    ++A L
Sbjct: 275 NVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAIL 334

Query: 403 AACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI 461
                + K +RA  +  +M Q  L P+  TY  L                   V+  +R 
Sbjct: 335 YGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLL------------------VEICRRD 376

Query: 462 NAIEM-----DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYN 513
           N +E      +M+R  +    +S  +L+  L   G + + + +F + +     P    Y 
Sbjct: 377 NILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYT 436

Query: 514 TVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRD 573
            ++           A+++  +M   G   +  TYN  ++     + F  A  L + MV  
Sbjct: 437 ILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVER 496

Query: 574 GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVI 633
           G  P   T+T LI+     G+ D+ALNL + +    +  D + YNT++   C+ G +   
Sbjct: 497 GMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRA 556

Query: 634 EFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAM 669
           + + + M +  + PD  +   V +G+ + G    A+
Sbjct: 557 KELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEAL 592



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 78/365 (21%), Positives = 154/365 (42%), Gaps = 22/365 (6%)

Query: 305 RTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDS 364
           R  N   A+++  +M   G+ P   ++   I  +  +  L   +   + M+++ + P D+
Sbjct: 374 RRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVP-DN 432

Query: 365 TIATLSVE--CSKALELDLAEALLDQISRC--TNPKPFSAFLAACDTMDKPERAIKIFAK 420
            I T+ ++  C      D  +   + ++R    +   ++ FL           A  +F +
Sbjct: 433 VIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNE 492

Query: 421 MRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHIS 479
           M ++ + PD  T+  L      +    ++GNM       K +N  E  M R N++   ++
Sbjct: 493 MVERGMVPDFYTFTTL------IRGYCKDGNM------DKALNLFEA-MVRTNLKPDKVT 539

Query: 480 MKNLLKAL---GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMK 536
              L+      G  G  +EL              +Y TVL+    +     A+ +  QM 
Sbjct: 540 YNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQML 599

Query: 537 TCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFD 596
             GI PN  T N +I           A   +S M+ +G  P + +Y  LI   L   + +
Sbjct: 600 EKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLE 659

Query: 597 EALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVF 656
           +A  L++ +   G+  +++ YN IL   C +G++   E ++ +M +  + PD +T   + 
Sbjct: 660 KAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLI 719

Query: 657 SGYVN 661
           +G+V+
Sbjct: 720 NGHVS 724



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 89/382 (23%), Positives = 144/382 (37%), Gaps = 49/382 (12%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ +I+A  R      A QL+    S G++P   TY+  +  +          +VL  M
Sbjct: 294 TYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEM 353

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKP 411
            Q  L P  +T  TL VE  +   +  A+ + D++SR     +   FS+ +         
Sbjct: 354 LQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHL 413

Query: 412 ERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
            +A+  F +M R  + PD   Y +L   F                              R
Sbjct: 414 YQALMHFREMERSGIVPDNVIYTILIDGF-----------------------------CR 444

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAME 530
           N      + M++ + A G           F D        TYNT L+ L + +    A  
Sbjct: 445 NGALSDALKMRDEMLARGC----------FMD------VVTYNTFLNGLCKKKMFADADM 488

Query: 531 IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590
           +F +M   G+ P+  T+  +I           A  L   MVR    P  +TY  LI    
Sbjct: 489 LFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFC 548

Query: 591 DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650
             G+   A  L D +  + I  D + Y T+L   C  G +     + +QM +  ++P+  
Sbjct: 549 KAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLV 608

Query: 651 TCHFVFSGYVNCGFHNSAMEAL 672
           TC+ +  GY   G    A E L
Sbjct: 609 TCNTLIKGYCRSGDMPKAYEYL 630



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 58/247 (23%), Positives = 100/247 (40%), Gaps = 38/247 (15%)

Query: 467 DMARNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQ 523
           DM    +    ++   L+ A   EG++ E   L+  F       G  TYN +L+ L +  
Sbjct: 282 DMEGKGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIG 341

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYN-IMIDCC------------------SIIRCFKSAS 564
           +  RA ++  +M   G+ PNAATYN ++++ C                   ++    S S
Sbjct: 342 KYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFS 401

Query: 565 ALVSMMVRDG----------------FYPQTMTYTALIKILLDYGDFDEALNLLDLVSLE 608
           +L+ ++ R+G                  P  + YT LI      G   +AL + D +   
Sbjct: 402 SLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLAR 461

Query: 609 GIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSA 668
           G   DV+ YNT L   C+K      + +  +M +  + PD  T   +  GY   G  + A
Sbjct: 462 GCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKA 521

Query: 669 MEALQVL 675
           +   + +
Sbjct: 522 LNLFEAM 528



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 109/460 (23%), Positives = 183/460 (39%), Gaps = 42/460 (9%)

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
           ME K +  +   Y  ++ A C+ G +EEA  L+     R G+ P L  YN+ L    K+ 
Sbjct: 283 MEGKGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSR-GMEPGLLTYNAILYGLCKIG 341

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSL-SIFSLR 231
               A   L  M    +  N  TY  LL     + N+    EI+++  +   L  + S  
Sbjct: 342 KYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFS 401

Query: 232 KFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTS----EGRLRSSRLDIPIPLNALP 287
             +    R   L   Y+ L H   +   G +  N       +G  R+  L   + +    
Sbjct: 402 SLIGVLARNGHL---YQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRD-- 456

Query: 288 VMKVLRWSFSDVI------HACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSD 341
              + R  F DV+      +   + +    A+ L  +M   G+ P  +T+   IR    D
Sbjct: 457 -EMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKD 515

Query: 342 RGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPF 398
             +   + + + M + NLKP   T  TL     KA E+  A+ L D + R     +   +
Sbjct: 516 GNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISY 575

Query: 399 SAFLAA-CDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLF---GNVNAPYEEGNMFS 453
              L   C +   PE A+ +  +M +K +RP++ T   L   +   G++   YE     S
Sbjct: 576 GTVLNGFCSSGLLPE-ALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYE---YLS 631

Query: 454 QVDSAKRINAIEMD-MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTY 512
           ++ S    N I  D  + N +   ++   NL KA         LI             TY
Sbjct: 632 KMIS----NGIIPDSFSYNTLIDGYLKEANLEKAF-------ILINEMEKRGLQFNIITY 680

Query: 513 NTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID 552
           N +L+      +   A ++ ++M   GI P+ ATY+ +I+
Sbjct: 681 NLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLIN 720



 Score = 45.1 bits (105), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 53/252 (21%), Positives = 104/252 (41%), Gaps = 22/252 (8%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           +  +++  CK G +++A NL   +  R  + P    YN+ +    K   M  A    D M
Sbjct: 505 FTTLIRGYCKDGNMDKALNLFEAM-VRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDM 563

Query: 185 DSRMVGKNEVTYTELLK----LAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRL 240
             + +  + ++Y  +L       +  + L+   ++ E  I+    ++ +    +  + R 
Sbjct: 564 IRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRP---NLVTCNTLIKGYCRS 620

Query: 241 RDLKSAYETLQHMVALAMMGKLY-INRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDV 299
            D+  AYE L  M++  ++   +  N   +G L+ + L+    L  +  M+     F+ +
Sbjct: 621 GDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFIL--INEMEKRGLQFNII 678

Query: 300 IH--------ACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVL 351
            +        A G+ Q    AEQ++ +M  +G+ P   TY   I   VS   ++      
Sbjct: 679 TYNLILNGFCAEGKMQE---AEQVLRKMIEIGINPDGATYSSLINGHVSQDNMKEAFRFH 735

Query: 352 KIMQQNNLKPQD 363
             M Q  L P D
Sbjct: 736 DEMLQRGLVPDD 747



 Score = 42.4 bits (98), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 71/351 (20%), Positives = 142/351 (40%), Gaps = 12/351 (3%)

Query: 90  FFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLG 149
           F  ++   AR+      +  +R ME   I  +N  Y +++   C+ G L +A  +   + 
Sbjct: 400 FSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEML 459

Query: 150 ERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNL 209
            R G +  +  YN+FL    K      A++  + M  R +  +  T+T L++      N+
Sbjct: 460 AR-GCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNM 518

Query: 210 SAVHEIWEDYIK-HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTS 268
                ++E  ++ +      +    +  F +  ++  A E    M+   ++       T 
Sbjct: 519 DKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTV 578

Query: 269 EGRLRSSRLDIPIPLNALPVM--KVLRWSF---SDVIHACGRTQNSGLAEQLMLQMQSLG 323
                SS L +P  LN    M  K +R +    + +I    R+ +   A + + +M S G
Sbjct: 579 LNGFCSSGL-LPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNG 637

Query: 324 LQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTI-ATLSVECSKALELDLA 382
           + P S +Y+  I   + +  L     ++  M++  L+    T    L+  C++    +  
Sbjct: 638 IIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAE 697

Query: 383 EALLDQISRCTNPK--PFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIR 430
           + L   I    NP    +S+ +    + D  + A +   +M Q+ L PD R
Sbjct: 698 QVLRKMIEIGINPDGATYSSLINGHVSQDNMKEAFRFHDEMLQRGLVPDDR 748


>gi|297738285|emb|CBI27486.3| unnamed protein product [Vitis vinifera]
          Length = 509

 Score = 80.1 bits (196), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 80/384 (20%), Positives = 152/384 (39%), Gaps = 50/384 (13%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           S + ++H   +     L+ +    M + G++ S  TY+  I  +  +  L     +   M
Sbjct: 23  SCNALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQM 82

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERA 414
           ++    P   T  +L     K   LD    + +Q+             A CD        
Sbjct: 83  KEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKD-----------ADCD-------- 123

Query: 415 IKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQ 474
                       PD+ TY  L              N F + +   +      +M  N ++
Sbjct: 124 ------------PDVITYNALI-------------NCFCKFERMPKAFEFLHEMKANGLK 158

Query: 475 HSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEI 531
            + ++    + A   EGM++E I++F D +    TP   TY +++ +  +A     A+++
Sbjct: 159 PNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKL 218

Query: 532 FKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLD 591
            +++   GI  N  TY  ++D        K A  +   M+  G  P   TYTAL+   + 
Sbjct: 219 VEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIK 278

Query: 592 YGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
             + + A ++L  +  + I  D+LLY TIL   C + R++  + +I ++ ++ +  +   
Sbjct: 279 AKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVI 338

Query: 652 CHFVFSGYVNCGFHNSAMEALQVL 675
              +   Y   G    A EAL +L
Sbjct: 339 YTTLMDAYFKSG---QATEALTLL 359



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 83/374 (22%), Positives = 157/374 (41%), Gaps = 32/374 (8%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A + + +M++ GL+P+  TY  FI A   +  L+  ++    M++  L P + T  +L  
Sbjct: 145 AFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLID 204

Query: 372 ECSKALELDLAEALLDQISRCT---NPKPFSAFLAACDTMDKPERAIKIF-AKMRQKLRP 427
              KA  L  A  L+++I +     N   ++A L       + + A ++F A +   + P
Sbjct: 205 ANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAP 264

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL 487
           +  TY  L  + G + A         +++ AK I     +M    I+   +    +L  L
Sbjct: 265 NQETYTAL--VHGFIKA--------KEMEYAKDILK---EMKEKCIKPDLLLYGTILWGL 311

Query: 488 GAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNA 544
             E  + E   LI    +S        Y T++ +  ++ ++  A+ + ++M         
Sbjct: 312 CNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLD------- 364

Query: 545 ATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDL 604
                ++D      CF+ A  L   M+  G  P  + YTALI   + +G+  EALNL D 
Sbjct: 365 -----LVDGLCKNNCFEVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDR 419

Query: 605 VSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGF 664
           +   G+  D+  Y  ++      G++     ++++M    V PD      +   Y   G 
Sbjct: 420 MIEIGMELDLHAYTALIWGLSHSGQVQKARNLLDEMIGKGVLPDEVVYMCLIKKYYALGK 479

Query: 665 HNSAMEALQVLSMR 678
            + A+E    ++ R
Sbjct: 480 VDEALELQNEMAKR 493



 Score = 49.7 bits (117), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 93/497 (18%), Positives = 187/497 (37%), Gaps = 71/497 (14%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y +M+  LCK G LE A +L   + E  G  P +  YNS +    KL  +       + M
Sbjct: 59  YNIMIDYLCKEGDLEMARSLFTQMKEA-GFTPDIVTYNSLIDGHGKLGLLDECICIFEQM 117

Query: 185 DSRMVGKNEVTYTELL----KLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRL 240
                  + +TY  L+    K     K    +HE+  + +K    ++ +   F+ +F + 
Sbjct: 118 KDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKP---NVVTYSTFIDAFCKE 174

Query: 241 RDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVI 300
             L+ A +    M  +A+                                   ++++ +I
Sbjct: 175 GMLQEAIKFFVDMRRVALTPN-------------------------------EFTYTSLI 203

Query: 301 HACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLK 360
            A  +  N   A +L+ ++   G++ +  TY   +  +  +  ++   EV + M    + 
Sbjct: 204 DANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVA 263

Query: 361 PQDSTIATLSVECSKALELDLAEALLDQIS-RCTNPKP--FSAFLAACDTMDKPERAIKI 417
           P   T   L     KA E++ A+ +L ++  +C  P    +   L       + E A  +
Sbjct: 264 PNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLL 323

Query: 418 FAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSH 477
             ++++     I T  ++++    ++A ++ G     +   + +  +   + +NN     
Sbjct: 324 IGEIKE---SGINTNAVIYTTL--MDAYFKSGQATEALTLLEEMLDLVDGLCKNNCFEVA 378

Query: 478 ISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESH----RAMEIFK 533
              K L   +  +GM+ + I Y                  +L++    H     A+ +  
Sbjct: 379 ---KKLFDEMLDKGMMPDKIAY-----------------TALIDGNMKHGNLQEALNLRD 418

Query: 534 QMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYG 593
           +M   G+  +   Y  +I   S     + A  L+  M+  G  P  + Y  LIK     G
Sbjct: 419 RMIEIGMELDLHAYTALIWGLSHSGQVQKARNLLDEMIGKGVLPDEVVYMCLIKKYYALG 478

Query: 594 DFDEALNLLDLVSLEGI 610
             DEAL L + ++  G+
Sbjct: 479 KVDEALELQNEMAKRGM 495


>gi|255556711|ref|XP_002519389.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541456|gb|EEF43006.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 634

 Score = 80.1 bits (196), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 93/405 (22%), Positives = 173/405 (42%), Gaps = 69/405 (17%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           F+ ++HA  R+ +   A +L+ +M   G QP    Y+  I  I S   L + MEV+ + +
Sbjct: 14  FNSLVHAYCRSGDYFYAYKLLKKMVICGYQPGYVVYNILIGGICSTEDLPS-MEVIGLAE 72

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAI 415
           +                 ++ LE+ +   +L++++ C     F+  L     + K E+A 
Sbjct: 73  RAY---------------NEMLEMGV---VLNKVNVCN----FTRCLCC---IGKFEKAY 107

Query: 416 KIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQ 474
            +  +M  K   PD  TY  +     N +   +   +F +             M RN I 
Sbjct: 108 NVIREMMSKGFIPDSSTYSKVIGYLCNASKVEKAFQLFQE-------------MKRNGIT 154

Query: 475 HSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEI 531
               +   LL      G+I +   +F + +     P   TY  ++H+ ++ ++  RA EI
Sbjct: 155 PDVYTYTTLLDRFCKVGLIEQARNWFDEMQQDGCAPNVVTYTALIHAYLKTRKLSRANEI 214

Query: 532 FKQMKTCGIPPNAATYNIMID----------CCSIIRCFKSASALVSMMVRDGFY----- 576
           F+ M + G  PN  TY  +ID           C I    K+    V +   D ++     
Sbjct: 215 FEMMLSNGCVPNIVTYTALIDGHCKAGETEKACQIYARMKNDK--VDIPDVDIYFRIVDS 272

Query: 577 ----PQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDV 632
               P  +TY AL+  L       EA +LL+ +SLEG   + ++Y+ ++   C+ G++D 
Sbjct: 273 ELKEPNVVTYGALVDGLCKAHKVKEARDLLETMSLEGCEPNQIIYDALIDGFCKVGKLDE 332

Query: 633 IEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAME-ALQVLS 676
            + +  +M  +   P+  T    +S  ++  F +  ++ AL+VL+
Sbjct: 333 AQEVFTKMLGHGCSPNVYT----YSSLIDKLFKDKRLDLALKVLT 373



 Score = 76.6 bits (187), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 78/364 (21%), Positives = 145/364 (39%), Gaps = 19/364 (5%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           ++S VI           A QL  +M+  G+ P  +TY   +        +         M
Sbjct: 124 TYSKVIGYLCNASKVEKAFQLFQEMKRNGITPDVYTYTTLLDRFCKVGLIEQARNWFDEM 183

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQI--SRCT-NPKPFSAFLAACDTMDKP 411
           QQ+   P   T   L     K  +L  A  + + +  + C  N   ++A +       + 
Sbjct: 184 QQDGCAPNVVTYTALIHAYLKTRKLSRANEIFEMMLSNGCVPNIVTYTALIDGHCKAGET 243

Query: 412 ERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFS---------QVDSAKRIN 462
           E+A +I+A+M+   + DI   ++ F +   V++  +E N+ +         +    K   
Sbjct: 244 EKACQIYARMKND-KVDIPDVDIYFRI---VDSELKEPNVVTYGALVDGLCKAHKVKEAR 299

Query: 463 AIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSL 519
            +   M+    + + I    L+      G + E  + F        +P   TY++++  L
Sbjct: 300 DLLETMSLEGCEPNQIIYDALIDGFCKVGKLDEAQEVFTKMLGHGCSPNVYTYSSLIDKL 359

Query: 520 VEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQT 579
            + +    A+++  +M      PN   Y  M+D    +     A  L+ MM   G YP  
Sbjct: 360 FKDKRLDLALKVLTKMLENSCAPNVVIYTEMVDGLCKVGKTDEAYRLMLMMEEKGCYPNV 419

Query: 580 MTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQ 639
           +TYTA+I      G  D  L LL L++ +G   + + Y  ++   C  G +D    ++E+
Sbjct: 420 VTYTAMIDGFGKAGRVDRCLELLQLMTSKGCAPNFITYRVLINHCCAAGLLDDAHKLLEE 479

Query: 640 MHQN 643
           M Q 
Sbjct: 480 MKQT 483



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 91/415 (21%), Positives = 166/415 (40%), Gaps = 46/415 (11%)

Query: 271 RLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHT 330
           R  +  L++ + LN     KV   +F+  +   G+ +    A  ++ +M S G  P S T
Sbjct: 73  RAYNEMLEMGVVLN-----KVNVCNFTRCLCCIGKFEK---AYNVIREMMSKGFIPDSST 124

Query: 331 YDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQIS 390
           Y   I  + +   +    ++ + M++N + P   T  TL     K   ++ A    D++ 
Sbjct: 125 YSKVIGYLCNASKVEKAFQLFQEMKRNGITPDVYTYTTLLDRFCKVGLIEQARNWFDEMQ 184

Query: 391 R---CTNPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPY 446
           +     N   ++A + A     K  RA +IF  M      P+I TY  L    G+  A  
Sbjct: 185 QDGCAPNVVTYTALIHAYLKTRKLSRANEIFEMMLSNGCVPNIVTYTALID--GHCKA-- 240

Query: 447 EEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTP 506
                  + + A +I A                MKN       +  I ++  YF    + 
Sbjct: 241 ------GETEKACQIYA---------------RMKN------DKVDIPDVDIYFRIVDSE 273

Query: 507 LGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSA 563
           L  P   TY  ++  L +A +   A ++ + M   G  PN   Y+ +ID    +     A
Sbjct: 274 LKEPNVVTYGALVDGLCKAHKVKEARDLLETMSLEGCEPNQIIYDALIDGFCKVGKLDEA 333

Query: 564 SALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKK 623
             + + M+  G  P   TY++LI  L      D AL +L  +       +V++Y  ++  
Sbjct: 334 QEVFTKMLGHGCSPNVYTYSSLIDKLFKDKRLDLALKVLTKMLENSCAPNVVIYTEMVDG 393

Query: 624 ACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678
            C+ G+ D    ++  M +    P+  T   +  G+   G  +  +E LQ+++ +
Sbjct: 394 LCKVGKTDEAYRLMLMMEEKGCYPNVVTYTAMIDGFGKAGRVDRCLELLQLMTSK 448



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 124/574 (21%), Positives = 221/574 (38%), Gaps = 63/574 (10%)

Query: 66  GERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCY 125
           G   RA + +L +G   + +   +F   L    +      V+   R M  K    ++  Y
Sbjct: 69  GLAERAYNEMLEMGVVLNKVNVCNFTRCLCCIGKFEKAYNVI---REMMSKGFIPDSSTY 125

Query: 126 LLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMD 185
             ++  LC    +E+A  L   + +R GI P +  Y + L    K+  +  A    D M 
Sbjct: 126 SKVIGYLCNASKVEKAFQLFQEM-KRNGITPDVYTYTTLLDRFCKVGLIEQARNWFDEMQ 184

Query: 186 SRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLK- 244
                 N VTYT L+   +  + LS  +EI+E  + +  +        + ++T L D   
Sbjct: 185 QDGCAPNVVTYTALIHAYLKTRKLSRANEIFEMMLSNGCVP------NIVTYTALIDGHC 238

Query: 245 SAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIP-------IPLNALPVMKVLRWSFS 297
            A ET +     A             R+++ ++DIP       I  + L    V+  ++ 
Sbjct: 239 KAGETEKACQIYA-------------RMKNDKVDIPDVDIYFRIVDSELKEPNVV--TYG 283

Query: 298 DVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQN 357
            ++    +      A  L+  M   G +P+   YD  I        L    EV   M  +
Sbjct: 284 ALVDGLCKAHKVKEARDLLETMSLEGCEPNQIIYDALIDGFCKVGKLDEAQEVFTKMLGH 343

Query: 358 NLKPQDSTIATLSVECSKALELDLAEALLDQI---SRCTNPKPFSAFLAACDTMDKPERA 414
              P   T ++L  +  K   LDLA  +L ++   S   N   ++  +     + K + A
Sbjct: 344 GCSPNVYTYSSLIDKLFKDKRLDLALKVLTKMLENSCAPNVVIYTEMVDGLCKVGKTDEA 403

Query: 415 IKIFAKMRQK-LRPDIRTYELLFSLFGN---VNAPYEEGNMFSQVDSAKRINA----IEM 466
            ++   M +K   P++ TY  +   FG    V+   E   + +    A         I  
Sbjct: 404 YRLMLMMEEKGCYPNVVTYTAMIDGFGKAGRVDRCLELLQLMTSKGCAPNFITYRVLINH 463

Query: 467 DMARNNIQHSHISMKNLLKALGAE--GMIRELIQYFC---------------DSKTPLGT 509
             A   +  +H  ++ + +    +  GM R++I+ F                D   P+  
Sbjct: 464 CCAAGLLDDAHKLLEEMKQTYWPKHIGMYRKVIEGFSHEFVASLGLLAELSEDGSVPI-L 522

Query: 510 PTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSM 569
           P Y  ++ + ++A     A+E+ +++ +        TY  +I+  ++      A  L S 
Sbjct: 523 PVYKLLIDNFIKAGRLEMALELHEELSSFS-AAYQNTYVSLIESLTLACKVDKAFKLYSD 581

Query: 570 MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLD 603
           M R GF P+      LIK LL  G ++EAL L D
Sbjct: 582 MTRRGFVPELSMLVCLIKGLLRVGKWEEALQLSD 615



 Score = 47.8 bits (112), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 73/341 (21%), Positives = 127/341 (37%), Gaps = 42/341 (12%)

Query: 310 GLAEQ---LMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTI 366
           GL EQ      +MQ  G  P+  TY   I A +  R L    E+ ++M  N   P   T 
Sbjct: 171 GLIEQARNWFDEMQQDGCAPNVVTYTALIHAYLKTRKLSRANEIFEMMLSNGCVPNIVTY 230

Query: 367 ATL------SVECSKALEL--------------DLAEALLDQISRCTNPKPFSAFLAACD 406
             L      + E  KA ++              D+   ++D   +  N   + A +    
Sbjct: 231 TALIDGHCKAGETEKACQIYARMKNDKVDIPDVDIYFRIVDSELKEPNVVTYGALVDGLC 290

Query: 407 TMDKPERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIE 465
              K + A  +   M  +   P+   Y+ L   F  V    E   +F+++        + 
Sbjct: 291 KAHKVKEARDLLETMSLEGCEPNQIIYDALIDGFCKVGKLDEAQEVFTKM--------LG 342

Query: 466 MDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQES 525
              + N   +S + +  L K    +  ++ L +   +S  P     Y  ++  L +  ++
Sbjct: 343 HGCSPNVYTYSSL-IDKLFKDKRLDLALKVLTKMLENSCAP-NVVIYTEMVDGLCKVGKT 400

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMID----CCSIIRCFKSASALVSMMVRDGFYPQTMT 581
             A  +   M+  G  PN  TY  MID       + RC +    L+ +M   G  P  +T
Sbjct: 401 DEAYRLMLMMEEKGCYPNVVTYTAMIDGFGKAGRVDRCLE----LLQLMTSKGCAPNFIT 456

Query: 582 YTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILK 622
           Y  LI      G  D+A  LL+ +     P  + +Y  +++
Sbjct: 457 YRVLINHCCAAGLLDDAHKLLEEMKQTYWPKHIGMYRKVIE 497


>gi|125602942|gb|EAZ42267.1| hypothetical protein OsJ_26834 [Oryza sativa Japonica Group]
          Length = 1088

 Score = 80.1 bits (196), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 75/360 (20%), Positives = 156/360 (43%), Gaps = 22/360 (6%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A +L + M++ G +P+ +TY   I  +     L+  + +   M ++ + P   T   L  
Sbjct: 509 AWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALIN 568

Query: 372 ECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLR-P 427
              +   +  A  +L+ + R    TN   ++  +     +  P++A+ +   M Q+    
Sbjct: 569 ILVENRRIKYAFVVLNLMGRNGLFTNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSA 628

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMK----NL 483
           ++ TY  +   +       + GN      SA RI  +  D      + S+  +      +
Sbjct: 629 NLVTYNTIIKGY------CDSGN----TTSALRILDLMRDGGCKPDEWSYTELICGFCKI 678

Query: 484 LKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPN 543
            K   A G+  E++    D   P    TY  ++    + ++   A  + + MK  G  PN
Sbjct: 679 SKMESAFGLFNEMVD---DGLCP-NEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPN 734

Query: 544 AATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLD 603
             TYN++I   +    F  A  L  +M+ +G +P  +TYTA+I  L   G    AL + +
Sbjct: 735 VQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFN 794

Query: 604 LVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
            +  +G   ++L Y+++++   ++G+++  E +  ++ ++ + PD  T   +   Y+  G
Sbjct: 795 KMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSG 854



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 94/417 (22%), Positives = 163/417 (39%), Gaps = 55/417 (13%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           ++ VI+A  +  N   AE +M ++    + P + TY   I        L + ++V   M 
Sbjct: 388 YNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMA 447

Query: 356 QNNLKPQDSTIATL------SVECSKALELD---LAEALLDQISRCTNPKPFSAFLAACD 406
           +   +P   T +TL      S   ++A +L    +   +L     CT P      +A CD
Sbjct: 448 KEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGP-----IIALCD 502

Query: 407 TMDKPERAIKIFAKMRQK-LRPDIRTYELLFS----------LFGNVNAPYEEGNMFSQV 455
            M   E A ++F  M+ K   P++ TY  L S            G  +    +G   + V
Sbjct: 503 -MGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTV 561

Query: 456 DSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQY--FCDSKTPLGTP--- 510
                IN +   +    I+++ +    +L  +G  G+   ++ Y         LG P   
Sbjct: 562 TYNALINIL---VENRRIKYAFV----VLNLMGRNGLFTNIVTYNEMIKGYCILGDPKKA 614

Query: 511 -----------------TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC 553
                            TYNT++    ++  +  A+ I   M+  G  P+  +Y  +I  
Sbjct: 615 MLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICG 674

Query: 554 CSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHD 613
              I   +SA  L + MV DG  P  +TYTALI         D A +LL+ +   G   +
Sbjct: 675 FCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPN 734

Query: 614 VLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAME 670
           V  YN ++    ++      E + + M +  + P+  T   +  G    G  + A+E
Sbjct: 735 VQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALE 791



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 91/211 (43%), Gaps = 3/211 (1%)

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTV---LHSLVEAQE 524
           MA+   + + ++   L+  L   G + E      +       PT +T    + +L +   
Sbjct: 446 MAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGC 505

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
              A  +F  MK  G  PN  TY  +I    +    K A  L   M RDG +P T+TY A
Sbjct: 506 YEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNA 565

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
           LI IL++      A  +L+L+   G+  +++ YN ++K  C  G       ++  M Q  
Sbjct: 566 LINILVENRRIKYAFVVLNLMGRNGLFTNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRG 625

Query: 645 VQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
              +  T + +  GY + G   SA+  L ++
Sbjct: 626 HSANLVTYNTIIKGYCDSGNTTSALRILDLM 656



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 117/572 (20%), Positives = 221/572 (38%), Gaps = 69/572 (12%)

Query: 106 VMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNS-F 164
           VM+ +  M  + +  N   Y  ++ ALCK G + +A  ++  + E   + P    Y S  
Sbjct: 369 VMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESE-MSPDTFTYTSMI 427

Query: 165 LGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYS 224
           LG C K H +  A    + M       N VTY+ L+        ++   ++  + I H  
Sbjct: 428 LGHCRK-HDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILH-- 484

Query: 225 LSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMG------KLYINRTSEGRLRSSRLD 278
                             L +A+     ++AL  MG      +L+++  ++G    +   
Sbjct: 485 ----------------GILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKG-CEPNVYT 527

Query: 279 IPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAI 338
               ++ L V  +L+                 +A  L  +M   G+ P++ TY+  I  +
Sbjct: 528 YTALISGLCVSGLLK-----------------VAIGLFHRMSRDGVFPNTVTYNALINIL 570

Query: 339 VSDRGLRNGMEVLKIMQQN----NLKPQDSTIATLSVECSKALELDLAEALLDQISRCTN 394
           V +R ++    VL +M +N    N+   +  I    +       + +   +L Q     N
Sbjct: 571 VENRRIKYAFVVLNLMGRNGLFTNIVTYNEMIKGYCILGDPKKAMLVMNNML-QRGHSAN 629

Query: 395 PKPFSAFLAA-CDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMF 452
              ++  +   CD+ +    A++I   MR    +PD  +Y  L   F  ++       +F
Sbjct: 630 LVTYNTIIKGYCDSGNTTS-ALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLF 688

Query: 453 SQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMI---RELIQYFCDSKTPLGT 509
           ++             M  + +  + ++   L+     +  +     L+++   S      
Sbjct: 689 NE-------------MVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNV 735

Query: 510 PTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSM 569
            TYN ++H L +      A E+ K M   GI PN  TY  MID          A  + + 
Sbjct: 736 QTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNK 795

Query: 570 MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
           M+  G  P  +TY++LI+ L   G  +EA NL   +   G+  D + Y  +++     G+
Sbjct: 796 MIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGK 855

Query: 630 IDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVN 661
           ++     + +M +   QP   T   +  G  N
Sbjct: 856 VEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKN 887


>gi|297800292|ref|XP_002868030.1| hypothetical protein ARALYDRAFT_914908 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297313866|gb|EFH44289.1| hypothetical protein ARALYDRAFT_914908 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 463

 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 95/468 (20%), Positives = 178/468 (38%), Gaps = 64/468 (13%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           AE L++    LG+ P   TY+  I       G+  G  V   M+   ++P  +T  +L  
Sbjct: 32  AETLIIDGIRLGVAPDVVTYNTLISGYCRFVGIEEGYAVTLRMRDAGIRPDVATYNSLIA 91

Query: 372 ECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRT 431
             ++ L LD    L D++                               +   + PD+ +
Sbjct: 92  GAARRLMLDRVLYLFDEM-------------------------------LEWGIYPDLWS 120

Query: 432 YELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEG 491
           Y  L   +  +   +EE               +  D+    +     +   LL AL   G
Sbjct: 121 YNTLMCCYFKL-GKHEEA-----------FRVLYKDLQLAGLSPGPDTYNVLLDALCKCG 168

Query: 492 MIRELIQYFCDSKTPLGTP--TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNI 549
            I   ++ F + ++       TYN +++ L +++    A  +  ++K  G  PNA TY  
Sbjct: 169 YIDNALELFKEMQSKFKPELMTYNILINGLCKSRRVGTAKWMLTELKRSGYTPNAVTYTT 228

Query: 550 MIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEG 609
           ++      R  +    L   M R+G+      Y A++  L+  G   EA   +  +  +G
Sbjct: 229 ILKLYIKTRRIRRGLQLFLEMKREGYTYDGYAYFAVVSALIKTGRTKEAYEYMQELVRKG 288

Query: 610 IPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAM 669
             HD++ YNT+L    + G +D ++ ++ ++ +  ++ D  T   + +G +  G    A 
Sbjct: 289 RRHDIVSYNTLLNLYFKDGNLDAVDDLLGEIERKGMKADEYTHTIIVNGLLRTGQTRRAE 348

Query: 670 E----------ALQVLSMRMLCE---EVSTLEEKRSDFEDLILAEDSEAESRILQFCEDS 716
           E           L +++   L +   +   ++     FE + + ++    S +   C+D 
Sbjct: 349 EHFVSMGEMGIGLNLVTCNCLVDGLCKAGHVDRAMRYFESMEVKDEYTYTSVVHNLCKD- 407

Query: 717 NENLAFTAALLQLRWCTIVGFPISWSLDRA--SGLEDSQTNSNSRKQE 762
              + F  A   L  C   G  I  S  RA  SGL  S     +RK +
Sbjct: 408 ---MRFVCASKLLLSCYNKGIKIPTSARRAVLSGLRMSGCYGEARKAK 452



 Score = 43.1 bits (100), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 96/495 (19%), Positives = 189/495 (38%), Gaps = 71/495 (14%)

Query: 119 GLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHAN 178
           GL+ +   + + +LCK   LE+A  LI   G R G+ P +  YN+ +    +   +    
Sbjct: 10  GLSTRLLNICVDSLCKFRKLEKAETLI-IDGIRLGVAPDVVTYNTLISGYCRFVGIEEGY 68

Query: 179 LCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK-HYSLSIFSLRKFVWSF 237
                M    +  +  TY  L+  A  +  L  V  ++++ ++      ++S    +  +
Sbjct: 69  AVTLRMRDAGIRPDVATYNSLIAGAARRLMLDRVLYLFDEMLEWGIYPDLWSYNTLMCCY 128

Query: 238 TRLRDLKSAYETLQHMVALAMM--GKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWS 295
            +L   + A+  L   + LA +  G    N   +   +   +D     NAL + K ++  
Sbjct: 129 FKLGKHEEAFRVLYKDLQLAGLSPGPDTYNVLLDALCKCGYID-----NALELFKEMQSK 183

Query: 296 FSD-------VIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGM 348
           F         +I+   +++  G A+ ++ +++  G  P++ TY   ++  +  R +R G+
Sbjct: 184 FKPELMTYNILINGLCKSRRVGTAKWMLTELKRSGYTPNAVTYTTILKLYIKTRRIRRGL 243

Query: 349 EVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTM 408
           ++   M++                                           A+ A    +
Sbjct: 244 QLFLEMKREGYTYDG-----------------------------------YAYFAVVSAL 268

Query: 409 DKPERAIKIFAKM----RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAI 464
            K  R  + +  M    R+  R DI +Y  L +L+      +++GN+   VD    +  I
Sbjct: 269 IKTGRTKEAYEYMQELVRKGRRHDIVSYNTLLNLY------FKDGNL-DAVDDL--LGEI 319

Query: 465 EMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQE 524
           E    + + +++H  + N L   G      E      +    L   T N ++  L +A  
Sbjct: 320 ERKGMKAD-EYTHTIIVNGLLRTGQTRRAEEHFVSMGEMGIGLNLVTCNCLVDGLCKAGH 378

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMI-DCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
             RAM  F+ M+      +  TY  ++ + C  +R F  AS L+      G    T    
Sbjct: 379 VDRAMRYFESMEV----KDEYTYTSVVHNLCKDMR-FVCASKLLLSCYNKGIKIPTSARR 433

Query: 584 ALIKILLDYGDFDEA 598
           A++  L   G + EA
Sbjct: 434 AVLSGLRMSGCYGEA 448


>gi|242045792|ref|XP_002460767.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
 gi|241924144|gb|EER97288.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
          Length = 762

 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 107/506 (21%), Positives = 194/506 (38%), Gaps = 57/506 (11%)

Query: 122 NKC-YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLC 180
           N C Y ++++ LC  G +E+A  L     +     P +  Y   +     L  + +A   
Sbjct: 261 NVCSYNILLKVLCGAGRVEDARQLF----DEMASPPDVVTYGILIHGYCALGELENAVKL 316

Query: 181 LDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWS-FTR 239
           LD M +R V  N   YT ++ L   +  +S    + ED + H  +   ++   V S F  
Sbjct: 317 LDDMVARGVEPNATVYTSVVALLCDKGRVSDALTVVEDMVHHKVILDEAVYTTVLSGFCN 376

Query: 240 LRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDV 299
             DL SA      M    +         ++G                        +++ +
Sbjct: 377 KGDLVSARRWFDEMQRKGL--------ATDG-----------------------VTYTTL 405

Query: 300 IHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNL 359
           I+   R      AE+++ +M +  L     TY   +        +    +V   M Q  +
Sbjct: 406 INGLCRAGELKEAEKVLQEMLARRLDVDEVTYTVLVDGYCKRGKMAEAFQVHNTMVQRGV 465

Query: 360 KPQDSTIATLSVECSKALELDLAEALLDQISRCT---NPKPFSAFLAACDTMDKPERAIK 416
            P   T   LS    K  ++  A  LL ++S      N   +++ +         ++A++
Sbjct: 466 APNVVTYTALSDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLDQAMR 525

Query: 417 IFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQH 475
             A M    L+PD+ TY  L      ++A  + G +        R + +  +M  N I+ 
Sbjct: 526 TMADMDAAGLKPDVYTYTTL------IDALCKSGEL-------DRAHDLLQEMLDNGIKP 572

Query: 476 SHISMKNLLKALGAEGMI---RELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIF 532
           + ++   L+      G +   ++L+++  +        TYN+++             EI+
Sbjct: 573 TIVTYNVLMNGFCMSGRVEGGKKLLEWMLEKNIHPNATTYNSLMKQYCIGNNMKSTTEIY 632

Query: 533 KQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDY 592
           K M +  + PN  TYNI+I      R  K A    + M+  GF     +Y+ALI++L   
Sbjct: 633 KGMCSRNVEPNENTYNILIKGHCKARSMKEAQYFHNEMIEKGFRLTASSYSALIRLLNKK 692

Query: 593 GDFDEALNLLDLVSLEGIPHDVLLYN 618
             F EA  L   +  EG   +  +YN
Sbjct: 693 KKFVEARKLFHDMRKEGFTAEPDVYN 718



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 101/460 (21%), Positives = 191/460 (41%), Gaps = 47/460 (10%)

Query: 295 SFSDVIH---ACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRG-LRNGMEV 350
           ++  +IH   A G  +N   A +L+  M + G++P++  Y   + A++ D+G + + + V
Sbjct: 296 TYGILIHGYCALGELEN---AVKLLDDMVARGVEPNATVYTSVV-ALLCDKGRVSDALTV 351

Query: 351 LKIMQQNNLKPQDSTIAT-LSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACD 406
           ++ M  + +   ++   T LS  C+K  +L  A    D++ R    T+   ++  +    
Sbjct: 352 VEDMVHHKVILDEAVYTTVLSGFCNKG-DLVSARRWFDEMQRKGLATDGVTYTTLINGLC 410

Query: 407 TMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIE 465
              + + A K+  +M  ++L  D  TY +L      V+   + G M            + 
Sbjct: 411 RAGELKEAEKVLQEMLARRLDVDEVTYTVL------VDGYCKRGKMAEAFQ-------VH 457

Query: 466 MDMARNNIQHSHISMKNLLKALGAEGMIR---ELIQYFCDSKTPLGTPTYNTVLHSLVEA 522
             M +  +  + ++   L   L  +G ++   EL+    +    L   TYN++++ L +A
Sbjct: 458 NTMVQRGVAPNVVTYTALSDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKA 517

Query: 523 QESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTY 582
               +AM     M   G+ P+  TY  +ID          A  L+  M+ +G  P  +TY
Sbjct: 518 GYLDQAMRTMADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEMLDNGIKPTIVTY 577

Query: 583 TALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642
             L+      G  +    LL+ +  + I  +   YN+++K+ C    +     I + M  
Sbjct: 578 NVLMNGFCMSGRVEGGKKLLEWMLEKNIHPNATTYNSLMKQYCIGNNMKSTTEIYKGMCS 637

Query: 643 NKVQPDPSTCHFVFSGYVNCG-------FHNSAME------ALQVLSMRMLCEEVSTLEE 689
             V+P+ +T + +  G+           FHN  +E      A    ++  L  +     E
Sbjct: 638 RNVEPNENTYNILIKGHCKARSMKEAQYFHNEMIEKGFRLTASSYSALIRLLNKKKKFVE 697

Query: 690 KRSDFEDLILAEDSEAESRILQFCEDSN---ENLAFTAAL 726
            R  F D+   E   AE  +  F  D N   +NL  T AL
Sbjct: 698 ARKLFHDM-RKEGFTAEPDVYNFYIDFNFNEDNLEATLAL 736



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 83/176 (47%), Gaps = 4/176 (2%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           +YN +L  L  A     A ++F +M +   PP+  TY I+I     +   ++A  L+  M
Sbjct: 264 SYNILLKVLCGAGRVEDARQLFDEMAS---PPDVVTYGILIHGYCALGELENAVKLLDDM 320

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           V  G  P    YT+++ +L D G   +AL +++ +    +  D  +Y T+L   C KG +
Sbjct: 321 VARGVEPNATVYTSVVALLCDKGRVSDALTVVEDMVHHKVILDEAVYTTVLSGFCNKGDL 380

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ-VLSMRMLCEEVS 685
                  ++M +  +  D  T   + +G    G    A + LQ +L+ R+  +EV+
Sbjct: 381 VSARRWFDEMQRKGLATDGVTYTTLINGLCRAGELKEAEKVLQEMLARRLDVDEVT 436



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/204 (22%), Positives = 79/204 (38%)

Query: 483 LLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPP 542
           LLK L   G + +  Q F +  +P    TY  ++H      E   A+++   M   G+ P
Sbjct: 268 LLKVLCGAGRVEDARQLFDEMASPPDVVTYGILIHGYCALGELENAVKLLDDMVARGVEP 327

Query: 543 NAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL 602
           NA  Y  ++           A  +V  MV          YT ++    + GD   A    
Sbjct: 328 NATVYTSVVALLCDKGRVSDALTVVEDMVHHKVILDEAVYTTVLSGFCNKGDLVSARRWF 387

Query: 603 DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNC 662
           D +  +G+  D + Y T++   C  G +   E ++++M   ++  D  T   +  GY   
Sbjct: 388 DEMQRKGLATDGVTYTTLINGLCRAGELKEAEKVLQEMLARRLDVDEVTYTVLVDGYCKR 447

Query: 663 GFHNSAMEALQVLSMRMLCEEVST 686
           G    A +    +  R +   V T
Sbjct: 448 GKMAEAFQVHNTMVQRGVAPNVVT 471



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 82/370 (22%), Positives = 145/370 (39%), Gaps = 30/370 (8%)

Query: 299 VIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNN 358
           V+   GR ++   A QL  +M S    P   TY   I    +   L N +++L  M    
Sbjct: 271 VLCGAGRVED---ARQLFDEMAS---PPDVVTYGILIHGYCALGELENAVKLLDDMVARG 324

Query: 359 LKPQDSTIAT--LSVECSKALELDLAEALLDQISR--CTNPKPFSAFLAA-CDTMDKPER 413
           ++P ++T+ T  +++ C K    D    + D +      +   ++  L+  C+  D    
Sbjct: 325 VEP-NATVYTSVVALLCDKGRVSDALTVVEDMVHHKVILDEAVYTTVLSGFCNKGDLVS- 382

Query: 414 AIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNN 472
           A + F +M++K L  D  TY  L              N   +    K    +  +M    
Sbjct: 383 ARRWFDEMQRKGLATDGVTYTTLI-------------NGLCRAGELKEAEKVLQEMLARR 429

Query: 473 IQHSHISMKNLLKALGAEGMIRELIQY---FCDSKTPLGTPTYNTVLHSLVEAQESHRAM 529
           +    ++   L+      G + E  Q               TY  +   L +  +   A 
Sbjct: 430 LDVDEVTYTVLVDGYCKRGKMAEAFQVHNTMVQRGVAPNVVTYTALSDGLCKQGDVQAAN 489

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
           E+  +M   G+  NA TYN +I+          A   ++ M   G  P   TYT LI  L
Sbjct: 490 ELLHEMSNKGLELNACTYNSLINGLCKAGYLDQAMRTMADMDAAGLKPDVYTYTTLIDAL 549

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649
              G+ D A +LL  +   GI   ++ YN ++   C  GR++  + ++E M +  + P+ 
Sbjct: 550 CKSGELDRAHDLLQEMLDNGIKPTIVTYNVLMNGFCMSGRVEGGKKLLEWMLEKNIHPNA 609

Query: 650 STCHFVFSGY 659
           +T + +   Y
Sbjct: 610 TTYNSLMKQY 619



 Score = 44.7 bits (104), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 45/209 (21%), Positives = 87/209 (41%), Gaps = 13/209 (6%)

Query: 10  FQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCR-GER 68
           + ++ D +CK       R  +A   ++  T+    G+    +   T   + D LC+ G+ 
Sbjct: 437 YTVLVDGYCK-------RGKMAEAFQVHNTMVQR-GVAPNVV---TYTALSDGLCKQGDV 485

Query: 69  SRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLM 128
             A+ LL  + +    L A  +  ++N   ++      M T   M+   +  +   Y  +
Sbjct: 486 QAANELLHEMSNKGLELNACTYNSLINGLCKAGYLDQAMRTMADMDAAGLKPDVYTYTTL 545

Query: 129 MQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRM 188
           + ALCK G L+ A +L+  + +  GI P +  YN  +        +      L+ M  + 
Sbjct: 546 IDALCKSGELDRAHDLLQEMLDN-GIKPTIVTYNVLMNGFCMSGRVEGGKKLLEWMLEKN 604

Query: 189 VGKNEVTYTELLKLAVWQKNLSAVHEIWE 217
           +  N  TY  L+K      N+ +  EI++
Sbjct: 605 IHPNATTYNSLMKQYCIGNNMKSTTEIYK 633


>gi|147859909|emb|CAN83144.1| hypothetical protein VITISV_040783 [Vitis vinifera]
          Length = 724

 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 75/355 (21%), Positives = 145/355 (40%), Gaps = 23/355 (6%)

Query: 299 VIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNN 358
           VI A G    +  AE +  +++  GL P +  Y+  ++  V    L++   ++  M+++ 
Sbjct: 368 VITALGNAGRTEEAEAIFEELKEGGLMPRTRAYNALLKGYVKTGSLKDAESIVSEMERSG 427

Query: 359 LKPQDSTIATLSVECSKALELDLAEALLDQISRC---TNPKPFSAFLAACDTMDKPERAI 415
             P + T + L    + A   + A  +L ++       N   FS  LA+     K +++ 
Sbjct: 428 FSPDEHTYSLLIDAYANAGRWESARIVLKEMEASGVRPNSYVFSRILASYRDRGKWQKSF 487

Query: 416 KIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMD-MARNNI 473
           ++  +MR   + PD   Y ++   FG  N        F ++    R+  ++ D +  N +
Sbjct: 488 QVLREMRNSGVSPDRHFYNVMIDTFGKCNCLDHALATFDRM----RMEGVQPDAVTWNTL 543

Query: 474 QHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFK 533
              H    +  KA        EL +   +S     T TYN +++S  E +       +  
Sbjct: 544 IDCHCKSGHHNKA-------EELFEAMQESGCSPCTTTYNIMINSFGEQERWEDVKTLLG 596

Query: 534 QMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYG 593
           +M++ G+  N  TY  +      I  F+       +M  DG  P  +   +LI    +  
Sbjct: 597 KMQSQGLLANVVTYTTLGLSEQAINAFR-------VMRADGLKPSVLVLNSLINAFGEDR 649

Query: 594 DFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
              EA ++L  +    +  DV+ Y T++K      + D +  + E+M  +   PD
Sbjct: 650 RDAEAFSVLQYMKENDLKPDVVTYTTLMKALIRVEKFDKVPAVYEEMTLSGCTPD 704



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/299 (22%), Positives = 128/299 (42%), Gaps = 11/299 (3%)

Query: 381 LAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRP-DIRTYELLFSLF 439
           L EA L    +   P  ++A + AC   D  E+A+ + ++MR+   P D   Y  +    
Sbjct: 241 LYEAFLLSQRQTLTPLTYNALIGACARNDDLEKALNLMSRMRRDGYPSDFVNYSFIIQSL 300

Query: 440 GNVNAPYEEGNMFSQVDSAKRINAIEMD-MARNNIQHSHISMKNLLKALGAEGMIRELIQ 498
              N    + +M  ++ +    + IE+D    N+I        ++ +A+    M++    
Sbjct: 301 TRTNK--SDSSMLQKIYAEIESDKIELDGQLLNDIIVGFAKSGDVNRAMSFLAMVQ---- 354

Query: 499 YFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIR 558
              +  +P  T T   V+ +L  A  +  A  IF+++K  G+ P    YN ++       
Sbjct: 355 --GNGLSP-KTATLVAVITALGNAGRTEEAEAIFEELKEGGLMPRTRAYNALLKGYVKTG 411

Query: 559 CFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYN 618
             K A ++VS M R GF P   TY+ LI    + G ++ A  +L  +   G+  +  +++
Sbjct: 412 SLKDAESIVSEMERSGFSPDEHTYSLLIDAYANAGRWESARIVLKEMEASGVRPNSYVFS 471

Query: 619 TILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSM 677
            IL    ++G+      ++ +M  + V PD    + +   +  C   + A+     + M
Sbjct: 472 RILASYRDRGKWQKSFQVLREMRNSGVSPDRHFYNVMIDTFGKCNCLDHALATFDRMRM 530



 Score = 69.3 bits (168), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 84/430 (19%), Positives = 169/430 (39%), Gaps = 63/430 (14%)

Query: 295 SFSDVIHACGRTQ--NSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
           ++S +I +  RT   +S + +++  +++S  ++      +  I        +   M  L 
Sbjct: 292 NYSFIIQSLTRTNKSDSSMLQKIYAEIESDKIELDGQLLNDIIVGFAKSGDVNRAMSFLA 351

Query: 353 IMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMD 409
           ++Q N L P+ +T+  +      A   + AEA+ +++         + ++A L       
Sbjct: 352 MVQGNGLSPKTATLVAVITALGNAGRTEEAEAIFEELKEGGLMPRTRAYNALLKGYVKTG 411

Query: 410 KPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
             + A  I ++M R    PD  TY LL   + N            + +SA+ +       
Sbjct: 412 SLKDAESIVSEMERSGFSPDEHTYSLLIDAYANAG----------RWESARIV------- 454

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRA 528
                          LK + A G +R              +  ++ +L S  +  +  ++
Sbjct: 455 ---------------LKEMEASG-VRP------------NSYVFSRILASYRDRGKWQKS 486

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
            ++ ++M+  G+ P+   YN+MID      C   A A    M  +G  P  +T+  LI  
Sbjct: 487 FQVLREMRNSGVSPDRHFYNVMIDTFGKCNCLDHALATFDRMRMEGVQPDAVTWNTLIDC 546

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
               G  ++A  L + +   G       YN ++    E+ R + ++ ++ +M    +  +
Sbjct: 547 HCKSGHHNKAEELFEAMQESGCSPCTTTYNIMINSFGEQERWEDVKTLLGKMQSQGLLAN 606

Query: 649 PSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDF-EDLILAEDSEAES 707
             T       Y   G    A+ A +V+    L   V  L    + F ED     D+EA S
Sbjct: 607 VVT-------YTTLGLSEQAINAFRVMRADGLKPSVLVLNSLINAFGED---RRDAEAFS 656

Query: 708 RILQFCEDSN 717
            +LQ+ ++++
Sbjct: 657 -VLQYMKEND 665


>gi|302759535|ref|XP_002963190.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
 gi|300168458|gb|EFJ35061.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
          Length = 573

 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 83/364 (22%), Positives = 155/364 (42%), Gaps = 20/364 (5%)

Query: 324 LQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQN-NLKPQDSTIATLSVECSKALELDLA 382
           + P+  TY+  +  +   R      EVLK M+   ++ P   T +T+     K  E+D A
Sbjct: 37  VAPNERTYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRA 96

Query: 383 -EALLDQISRCTNPKPFSAFLAACDTM---DKPERAIKIFAKMRQK-LRPDIRTYELLFS 437
            E L + ++R         + +  D +    K +RA ++  +M+ K + PD  T+  L +
Sbjct: 97  CEILREMVTRDGIAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALIT 156

Query: 438 LFGNVNAPYEEGNMFSQV--DSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRE 495
            + N     E   ++ ++   S+ + + +      +    S     NL KA+   G++  
Sbjct: 157 GWCNARKVDEALKLYKEILTSSSWKPDVVTYTALIDGFCKSG----NLEKAMKMLGVME- 211

Query: 496 LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCS 555
                   K      TY+++LH L +A +  +A+++F++M + G  PN  TY  +I    
Sbjct: 212 ------GRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLC 265

Query: 556 IIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVL 615
                 +A  L+  M      P T++Y AL+      G  +EA  L   ++ +    D +
Sbjct: 266 AAHKVDAARLLMDEMTATCCPPDTVSYNALLDGYCRLGRIEEAKQLFKEMATKSCLPDRI 325

Query: 616 LYNTILKKACEKGRIDVIEFIIEQMHQNK-VQPDPSTCHFVFSGYVNCGFHNSAMEALQV 674
            Y  +++  C   R++   F++E M     + PD  T   V +GY        A E +Q 
Sbjct: 326 TYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQE 385

Query: 675 LSMR 678
           +  R
Sbjct: 386 MIAR 389



 Score = 79.3 bits (194), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 88/413 (21%), Positives = 165/413 (39%), Gaps = 32/413 (7%)

Query: 295 SFSDVIHA-CGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           ++S VI+  C + +     E L   +   G+ P   TY   +  +  D  +    E+++ 
Sbjct: 79  TYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTSVVDGLCRDGKMDRACEMVRE 138

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMD 409
           M+   ++P   T + L      A ++D A  L  +I   ++ KP    ++A +       
Sbjct: 139 MKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSSWKPDVVTYTALIDGFCKSG 198

Query: 410 KPERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDS----------- 457
             E+A+K+   M  +K  P++ TY  L           +  ++F ++ S           
Sbjct: 199 NLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYT 258

Query: 458 --------AKRINAIEM---DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTP 506
                   A +++A  +   +M         +S   LL      G I E  Q F +  T 
Sbjct: 259 TLIHGLCAAHKVDAARLLMDEMTATCCPPDTVSYNALLDGYCRLGRIEEAKQLFKEMATK 318

Query: 507 LGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTC-GIPPNAATYNIMIDCCSIIRCFKS 562
              P   TY  ++     A     A  + + MKT  GI P+  TY+I++   S  + F  
Sbjct: 319 SCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVE 378

Query: 563 ASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILK 622
           A+  +  M+     P  +TY++LI  L   G  D A+ +L  +  + +   V  +N+++ 
Sbjct: 379 AAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVDHAMEVLKNMVNKRVEPSVGTFNSVIG 438

Query: 623 KACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
             C  G +D    ++  M  + ++P   T   +  G+   G    A E  +V+
Sbjct: 439 ALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAYELFEVM 491



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 109/532 (20%), Positives = 207/532 (38%), Gaps = 64/532 (12%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFL-GAC-AKLHSMVHANLCLD 182
           + +++   CK   L++A  L  F   R  + P    YN  + G C A+L S  +  L  +
Sbjct: 10  WTIIIDGFCKANQLKQA--LACFEKMREFVAPNERTYNVVVNGLCKARLTSKAYEVL-KE 66

Query: 183 LMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLS--IFSLRKFVWSFTRL 240
           + D + V  + VTY+ ++     Q  +    EI  + +    ++  + +    V    R 
Sbjct: 67  MRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTSVVDGLCRD 126

Query: 241 RDLKSAYETLQHMVALAMM-GKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRW----- 294
             +  A E ++ M    +   K   +    G   + ++D  + L    ++    W     
Sbjct: 127 GKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYK-EILTSSSWKPDVV 185

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ +I    ++ N   A +++  M+     P+  TY   +  +     L   +++ + M
Sbjct: 186 TYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRM 245

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQIS-RCTNPK--PFSAFLAACDTMDKP 411
                 P   T  TL      A ++D A  L+D+++  C  P    ++A L     + + 
Sbjct: 246 TSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPPDTVSYNALLDGYCRLGRI 305

Query: 412 ERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           E A ++F +M  K   PD  TY  L   F N +                           
Sbjct: 306 EEAKQLFKEMATKSCLPDRITYTCLVRGFCNAS--------------------------- 338

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAME 530
             ++ +   ++N+  A G +  +                 TY+ V+     A+    A E
Sbjct: 339 -RLEEARFLLENMKTAAGIDPDV----------------VTYSIVVAGYSRAKRFVEAAE 381

Query: 531 IFKQMKTCGIPPNAATYNIMID-CCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
             ++M    + PNA TY+ +ID  C   R    A  ++  MV     P   T+ ++I  L
Sbjct: 382 FIQEMIARNVAPNAVTYSSLIDGLCKAGR-VDHAMEVLKNMVNKRVEPSVGTFNSVIGAL 440

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMH 641
              GD DEA  LL  ++  G+   ++ Y T+L+     GR+++   + E M 
Sbjct: 441 CRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAYELFEVMR 492


>gi|218196467|gb|EEC78894.1| hypothetical protein OsI_19266 [Oryza sativa Indica Group]
 gi|222630938|gb|EEE63070.1| hypothetical protein OsJ_17878 [Oryza sativa Japonica Group]
          Length = 939

 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 114/575 (19%), Positives = 232/575 (40%), Gaps = 39/575 (6%)

Query: 112 MMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKL 171
           M E  +I ++   Y +M+   C+ G +++A+ +   + +  GI+  L VYN+ +    KL
Sbjct: 314 MKETGDIVVDEVAYGMMINGYCQRGRMDDATRVRNEMRDA-GIHVNLFVYNTMINGLCKL 372

Query: 172 HSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH----YSLSI 227
             M      L  M+   +  ++ +Y  L+     + ++    E+    +++     +L+ 
Sbjct: 373 GRMEEVQKVLQEMEDVGMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTY 432

Query: 228 FSLRKFVWSFTRLRD-LKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNAL 286
            +L K   S   + D L+  +  L+  VA     ++  +   +G  ++ + +  + L   
Sbjct: 433 NTLLKGFCSLHAIDDALRLWFLMLKRGVA---PNEISCSTLLDGLFKAGKTEQALNLWKE 489

Query: 287 PVMKVLR---WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRG 343
            + + L     +F+ VI+   +      AE+L+ +M+ L   P S TY            
Sbjct: 490 TLARGLAKNVITFNTVINGLCKIGRMAEAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQ 549

Query: 344 LRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQIS-RCTNPK--PFSA 400
           L     ++  M+     P      +       A +      +  ++S R  +P    + A
Sbjct: 550 LGTATHLMNKMEHLGFAPSVEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGA 609

Query: 401 FLAA-CDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAK 459
            +A  C   +  E     F  +   + P++     L S F      Y+EG    +VD A 
Sbjct: 610 LIAGWCKEGNLHEACNLYFEMVNNGMNPNVFICSALMSCF------YKEG----KVDEAN 659

Query: 460 RI--NAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLH 517
            +    + +DM    I    IS   + K       I  ++    D         +N ++ 
Sbjct: 660 LVLQKLVNIDM----IPGCSISTIEIDK-------ISHVVDTIADGNPHSANVMWNVIIF 708

Query: 518 SLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYP 577
            L ++     A  +F+ ++     P+  TY+ +I  C+       A +L  +M+  G  P
Sbjct: 709 GLCKSGRIADAKSLFESLRNKRFLPDNFTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTP 768

Query: 578 QTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFII 637
             +TY +LI  L   G    A+NL + +  +GI  + + YNT++ + C++G+      + 
Sbjct: 769 NIITYNSLIYGLCKSGKLSRAVNLFNKLQSKGISPNGITYNTLIDEYCKEGKTTEAFKLK 828

Query: 638 EQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEAL 672
           ++M +  +QP   T   +  G    G+   A++ L
Sbjct: 829 QKMVEEGIQPTVITYSILIYGLCTQGYMEEAIKLL 863



 Score = 79.3 bits (194), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 77/363 (21%), Positives = 152/363 (41%), Gaps = 13/363 (3%)

Query: 305 RTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDS 364
           ++ + G+A  +  QM+  G+ P   T     +A   D  +   +E ++ M+   L+    
Sbjct: 195 QSGDPGMAAMVYGQMRIAGVLPDEFTVAIMAKAYCRDGRVAQAVEFVEEMEGMGLEVNLV 254

Query: 365 TI-ATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKPERAIKIFAK 420
              A +   C      D A  +L+ + R     N   ++  +       + E A ++  +
Sbjct: 255 AYHAVMDCYCGMGWTED-ARRILESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKE 313

Query: 421 MRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISM 480
           M++    DI   E+ + +   +N   + G M    D A R+     D   +     + +M
Sbjct: 314 MKET--GDIVVDEVAYGMM--INGYCQRGRM----DDATRVRNEMRDAGIHVNLFVYNTM 365

Query: 481 KNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGI 540
            N L  LG    +++++Q   D        +YNT++          +A E+ + M   G+
Sbjct: 366 INGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGL 425

Query: 541 PPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALN 600
                TYN ++     +     A  L  +M++ G  P  ++ + L+  L   G  ++ALN
Sbjct: 426 AATTLTYNTLLKGFCSLHAIDDALRLWFLMLKRGVAPNEISCSTLLDGLFKAGKTEQALN 485

Query: 601 LLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYV 660
           L       G+  +V+ +NT++   C+ GR+   E ++++M + +  PD  T   +F GY 
Sbjct: 486 LWKETLARGLAKNVITFNTVINGLCKIGRMAEAEELLDRMKELRCPPDSLTYRTLFDGYC 545

Query: 661 NCG 663
             G
Sbjct: 546 KLG 548



 Score = 76.6 bits (187), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 125/583 (21%), Positives = 214/583 (36%), Gaps = 75/583 (12%)

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
           M +  I +N   Y  M+  LCK G +EE   ++  + E  G+ P    YN+ +    +  
Sbjct: 350 MRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEM-EDVGMRPDKYSYNTLIDGYCREG 408

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSL------- 225
           SM  A     +M    +    +TY  LLK         ++H I +D ++ + L       
Sbjct: 409 SMRKAFEMCRMMVRNGLAATTLTYNTLLK------GFCSLHAI-DDALRLWFLMLKRGVA 461

Query: 226 -----------SIFSLRKF-----VWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSE 269
                       +F   K      +W  T  R L     T   ++     G   I R +E
Sbjct: 462 PNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNTVIN----GLCKIGRMAE 517

Query: 270 GRLRSSRL-DIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSS 328
                 R+ ++  P ++L        ++  +     +    G A  LM +M+ LG  PS 
Sbjct: 518 AEELLDRMKELRCPPDSL--------TYRTLFDGYCKLGQLGTATHLMNKMEHLGFAPSV 569

Query: 329 HTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEA---L 385
             ++ FI      +      ++   M    L P   T   L     K  E +L EA    
Sbjct: 570 EMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIAGWCK--EGNLHEACNLY 627

Query: 386 LDQISRCTNPKPF--SAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVN 443
            + ++   NP  F  SA ++      K + A  +  K+                    VN
Sbjct: 628 FEMVNNGMNPNVFICSALMSCFYKEGKVDEANLVLQKL--------------------VN 667

Query: 444 APYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDS 503
                G   S ++  K I+ +   +A  N   +++    ++  L   G I +    F   
Sbjct: 668 IDMIPGCSISTIEIDK-ISHVVDTIADGNPHSANVMWNVIIFGLCKSGRIADAKSLFESL 726

Query: 504 KTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCF 560
           +     P   TY++++H    +     A  +   M + G+ PN  TYN +I         
Sbjct: 727 RNKRFLPDNFTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKL 786

Query: 561 KSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTI 620
             A  L + +   G  P  +TY  LI      G   EA  L   +  EGI   V+ Y+ +
Sbjct: 787 SRAVNLFNKLQSKGISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEEGIQPTVITYSIL 846

Query: 621 LKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
           +   C +G ++    +++QM +N V P+  T   +  GY+  G
Sbjct: 847 IYGLCTQGYMEEAIKLLDQMIENNVDPNYITYCTLIHGYIKSG 889



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/185 (20%), Positives = 82/185 (44%), Gaps = 36/185 (19%)

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
           +A+E  ++M+  G+  N   Y+ ++DC   +   + A  ++  + R G  P  +TYT L+
Sbjct: 236 QAVEFVEEMEGMGLEVNLVAYHAVMDCYCGMGWTEDARRILESLQRKGLSPNVVTYTLLV 295

Query: 587 K-----------------------ILLD-------------YGDFDEALNLLDLVSLEGI 610
           K                       I++D              G  D+A  + + +   GI
Sbjct: 296 KGYCKDGRMEEAERVVKEMKETGDIVVDEVAYGMMINGYCQRGRMDDATRVRNEMRDAGI 355

Query: 611 PHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAME 670
             ++ +YNT++   C+ GR++ ++ ++++M    ++PD  + + +  GY   G    A E
Sbjct: 356 HVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYNTLIDGYCREGSMRKAFE 415

Query: 671 ALQVL 675
             +++
Sbjct: 416 MCRMM 420



 Score = 39.7 bits (91), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 72/352 (20%), Positives = 140/352 (39%), Gaps = 38/352 (10%)

Query: 55  TQMQIVDALCR-GERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRM- 112
           T   + D  C+ G+   A+HL+  + H   +   + F   +          F+ + W   
Sbjct: 536 TYRTLFDGYCKLGQLGTATHLMNKMEHLGFAPSVEMFNSFIT-------GHFIAKQWHKV 588

Query: 113 ------MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLG 166
                 M  + +  N   Y  ++   CK G L EA NL YF     G+ P + + ++ + 
Sbjct: 589 NDIHSEMSARGLSPNLVTYGALIAGWCKEGNLHEACNL-YFEMVNNGMNPNVFICSALMS 647

Query: 167 ACAKLHSMVHANLCLD-LMDSRMVGKNEVTYTELLKLA-----VWQKNLSAVHEIWEDYI 220
              K   +  ANL L  L++  M+    ++  E+ K++     +   N  + + +W    
Sbjct: 648 CFYKEGKVDEANLVLQKLVNIDMIPGCSISTIEIDKISHVVDTIADGNPHSANVMW---- 703

Query: 221 KHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIP 280
              ++ IF L K      R+ D KS +E+L++   L        +    G   S  +D  
Sbjct: 704 ---NVIIFGLCKS----GRIADAKSLFESLRNKRFLP--DNFTYSSLIHGCAASGSIDEA 754

Query: 281 IPLNALPVMKVLR---WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRA 337
             L  + +   L     +++ +I+   ++     A  L  ++QS G+ P+  TY+  I  
Sbjct: 755 FSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSKGISPNGITYNTLIDE 814

Query: 338 IVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI 389
              +       ++ + M +  ++P   T + L         ++ A  LLDQ+
Sbjct: 815 YCKEGKTTEAFKLKQKMVEEGIQPTVITYSILIYGLCTQGYMEEAIKLLDQM 866


>gi|357499049|ref|XP_003619813.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494828|gb|AES76031.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 614

 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 70/320 (21%), Positives = 139/320 (43%), Gaps = 27/320 (8%)

Query: 378 ELDLAEALLDQISRCTNP-KP---FSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTY 432
            +D A +  + I    NP +P   F+  L++   ++    AI    +M  K ++PD+ T+
Sbjct: 43  NVDDAVSSFNHILHMRNPVQPIFEFNKILSSLVKLNHFHTAISFSKQMELKQIQPDLFTF 102

Query: 433 ELLFSLF---GNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGA 489
            +L + F   G++N  +                ++   + +       +++  L+K L  
Sbjct: 103 NILINCFCHLGHLNFAF----------------SVLAKIFKLGFHPDTVTITTLIKGLCL 146

Query: 490 EGMIRELIQYFCDSKTP---LGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAAT 546
            G +RE + +  D       L   +Y T+++ L +  E+  A+++ +++    + PN   
Sbjct: 147 NGKVREALHFHDDVIAKGFHLDQVSYGTLINGLCKTGETRAALQVLRKIDGLLVQPNVVM 206

Query: 547 YNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVS 606
           YN +ID     +    AS L S M+    +P  +TYT LI   L  G   EA+ L + + 
Sbjct: 207 YNTIIDSLCKDKLVIHASDLCSEMIVKRIFPDVVTYTTLIYGCLIVGRLKEAVGLFNQML 266

Query: 607 LEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHN 666
           L+ I  DV  +N ++   C++G +     ++  M +  V  +  T + +  GY      N
Sbjct: 267 LKNIKPDVYTFNILVDGLCKEGEMKKARNVLAVMIKQGVDSNIVTYNSLMDGYFLVKQEN 326

Query: 667 SAMEALQVLSMRMLCEEVST 686
            A      ++ R +  +V +
Sbjct: 327 KATFVFNTMARRGVTPDVQS 346



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 77/363 (21%), Positives = 151/363 (41%), Gaps = 55/363 (15%)

Query: 323 GLQPSSHTYDGFIRAIVSDRGLRNGMEVLK----IMQQNNLKPQDSTIATLSVECSKALE 378
           G      +Y   I  +      R  ++VL+    ++ Q N+   ++ I +L   C   L 
Sbjct: 164 GFHLDQVSYGTLINGLCKTGETRAALQVLRKIDGLLVQPNVVMYNTIIDSL---CKDKLV 220

Query: 379 LDLAEALLDQISRCTNPK--PFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELL 435
           +  ++   + I +   P    ++  +  C  + + + A+ +F +M  K ++PD+ T+ +L
Sbjct: 221 IHASDLCSEMIVKRIFPDVVTYTTLIYGCLIVGRLKEAVGLFNQMLLKNIKPDVYTFNIL 280

Query: 436 FSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRE 495
                 V+   +EG               EM  ARN           +L  +  +G+   
Sbjct: 281 ------VDGLCKEG---------------EMKKARN-----------VLAVMIKQGVDSN 308

Query: 496 LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCS 555
           ++             TYN+++      ++ ++A  +F  M   G+ P+  +Y+IMI+   
Sbjct: 309 IV-------------TYNSLMDGYFLVKQENKATFVFNTMARRGVTPDVQSYSIMINGLC 355

Query: 556 IIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVL 615
             +    A  L   M      P T+TY +LI  LL YG   +A +L++ +   G P DV+
Sbjct: 356 KTKMVDEAVNLFKEMHSKSMAPNTVTYNSLIDGLLKYGRISDAWDLVNEMHNRGQPADVI 415

Query: 616 LYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
            Y+++L   C+  ++D    +I ++    +QP+  T   +  G    G    A    Q L
Sbjct: 416 TYSSLLDALCKNHQVDKAITLITKIKDQGIQPNIYTYTILVDGLCKNGRLKDAQAVYQDL 475

Query: 676 SMR 678
            ++
Sbjct: 476 LIK 478



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 81/366 (22%), Positives = 150/366 (40%), Gaps = 24/366 (6%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           S+  +I+   +T  +  A Q++ ++  L +QP+   Y+  I ++  D+ + +  ++   M
Sbjct: 171 SYGTLINGLCKTGETRAALQVLRKIDGLLVQPNVVMYNTIIDSLCKDKLVIHASDLCSEM 230

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDK 410
               + P   T  TL   C     L  A  L +Q+    N KP    F+  +       +
Sbjct: 231 IVKRIFPDVVTYTTLIYGCLIVGRLKEAVGLFNQM-LLKNIKPDVYTFNILVDGLCKEGE 289

Query: 411 PERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
            ++A  + A M +Q +  +I TY  L   +  V    +   +F+              MA
Sbjct: 290 MKKARNVLAVMIKQGVDSNIVTYNSLMDGYFLVKQENKATFVFNT-------------MA 336

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYF----CDSKTPLGTPTYNTVLHSLVEAQES 525
           R  +     S   ++  L    M+ E +  F      S  P  T TYN+++  L++    
Sbjct: 337 RRGVTPDVQSYSIMINGLCKTKMVDEAVNLFKEMHSKSMAP-NTVTYNSLIDGLLKYGRI 395

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
             A ++  +M   G P +  TY+ ++D          A  L++ +   G  P   TYT L
Sbjct: 396 SDAWDLVNEMHNRGQPADVITYSSLLDALCKNHQVDKAITLITKIKDQGIQPNIYTYTIL 455

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           +  L   G   +A  +   + ++G   DV +YN ++   C++G  D    ++ +M  N  
Sbjct: 456 VDGLCKNGRLKDAQAVYQDLLIKGYHLDVKMYNVMVNGLCKEGLFDEALSLVSKMEDNGC 515

Query: 646 QPDPST 651
            PD  T
Sbjct: 516 IPDAVT 521



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 74/345 (21%), Positives = 151/345 (43%), Gaps = 57/345 (16%)

Query: 295 SFSDVIHAC---GRTQNS-GLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEV 350
           +++ +I+ C   GR + + GL  Q++L+     ++P  +T++  +  +  +  ++    V
Sbjct: 241 TYTTLIYGCLIVGRLKEAVGLFNQMLLK----NIKPDVYTFNILVDGLCKEGEMKKARNV 296

Query: 351 LKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDK 410
           L +M +  +   DS I T +             +L+D             FL     + +
Sbjct: 297 LAVMIKQGV---DSNIVTYN-------------SLMD-----------GYFL-----VKQ 324

Query: 411 PERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
             +A  +F  M R+ + PD+++Y ++ +         E  N+F ++ S          MA
Sbjct: 325 ENKATFVFNTMARRGVTPDVQSYSIMINGLCKTKMVDEAVNLFKEMHSKS--------MA 376

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESH 526
            N + ++     +L+  L   G I +   L+    +   P    TY+++L +L +  +  
Sbjct: 377 PNTVTYN-----SLIDGLLKYGRISDAWDLVNEMHNRGQPADVITYSSLLDALCKNHQVD 431

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
           +A+ +  ++K  GI PN  TY I++D        K A A+   ++  G++     Y  ++
Sbjct: 432 KAITLITKIKDQGIQPNIYTYTILVDGLCKNGRLKDAQAVYQDLLIKGYHLDVKMYNVMV 491

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
             L   G FDEAL+L+  +   G   D + Y T+++   E  + D
Sbjct: 492 NGLCKEGLFDEALSLVSKMEDNGCIPDAVTYETLVRALFENDKND 536


>gi|125539937|gb|EAY86332.1| hypothetical protein OsI_07707 [Oryza sativa Indica Group]
          Length = 584

 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 66/290 (22%), Positives = 121/290 (41%), Gaps = 18/290 (6%)

Query: 405 CDTM-------DKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVD 456
           CDT+        +   A+ +  +M R++  PD+ TY +L       +   +   +  ++ 
Sbjct: 163 CDTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEM- 221

Query: 457 SAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVL 516
              R      D+   N+  + I  +   +   A   ++ L  Y C+  T     +YN VL
Sbjct: 222 ---RDKGCTPDIVTYNVVVNGICQEG--RVDDAIEFLKNLPSYGCEPNTV----SYNIVL 272

Query: 517 HSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFY 576
             L  A+    A E+  +M   G PPN  T+N++I         + A  ++  + + G  
Sbjct: 273 KGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCS 332

Query: 577 PQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFI 636
           P +++Y  L+         D+A+  LDL+   G   D++ YNT+L   C  G +DV   +
Sbjct: 333 PNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVEL 392

Query: 637 IEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           + Q+      P   + + V  G    G    A+E L  +  + L  ++ T
Sbjct: 393 LHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIIT 442



 Score = 72.4 bits (176), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 88/383 (22%), Positives = 153/383 (39%), Gaps = 25/383 (6%)

Query: 304 GRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQD 363
           GRT N+      ML+ + +   P   TY   + A     G +  M++L  M+     P  
Sbjct: 174 GRTANALAVLDEMLRRRCV---PDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDI 230

Query: 364 STI-ATLSVECSKALELDLAEALLDQISRCTNPK--PFSAFLAACDTMDKPERAIKIFAK 420
            T    ++  C +    D  E L +  S    P    ++  L    T ++ E A ++  +
Sbjct: 231 VTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGE 290

Query: 421 MRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHIS 479
           M QK   P++ T+ +L S             +  Q+    +       ++ N + H+   
Sbjct: 291 MGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQI---PKYGCSPNSLSYNPLLHAFCK 347

Query: 480 MKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCG 539
            K + KA+     +  ++   C         +YNT+L +L  + E   A+E+  Q+K  G
Sbjct: 348 QKKMDKAMA---FLDLMVSRGCYPDIV----SYNTLLTALCRSGEVDVAVELLHQLKDKG 400

Query: 540 IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEAL 599
             P   +YN +ID  +     K A  L++ MV  G  P  +TY+ +   L      ++A+
Sbjct: 401 CAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAI 460

Query: 600 NLLDLVSLEGIPHDVLLYNTILKKACEK----GRIDVIEFIIEQMHQNKVQPDPSTCHFV 655
                V   GI  + +LYN I+   C++      ID+  ++I     N   P+ ST   +
Sbjct: 461 RAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMI----GNGCMPNESTYTIL 516

Query: 656 FSGYVNCGFHNSAMEALQVLSMR 678
             G    G    A + L  L  R
Sbjct: 517 IEGLAYEGLIKEARDLLDELCSR 539



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 70/163 (42%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           T +T++  L     +  A+ +  +M      P+  TY I+++       +K A  L+  M
Sbjct: 162 TCDTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEM 221

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
              G  P  +TY  ++  +   G  D+A+  L  +   G   + + YN +LK  C   R 
Sbjct: 222 RDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERW 281

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           +  E ++ +M Q    P+  T + + S     G    A+E L+
Sbjct: 282 EDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLE 324



 Score = 48.9 bits (115), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 58/259 (22%), Positives = 97/259 (37%), Gaps = 35/259 (13%)

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
           M +K    N   + +++  LC+ G +E A  ++  +  +YG  P    YN  L A  K  
Sbjct: 291 MGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQI-PKYGCSPNSLSYNPLLHAFCKQK 349

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYSLSIFSLR 231
            M  A   LDLM SR    + V+Y  LL        +    E+      K  +  + S  
Sbjct: 350 KMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYN 409

Query: 232 KFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRT-SEGRLRSSRLDIPIPLNALPVMK 290
             +   T+    K A E L  MV+  +   +    T + G  R  R++            
Sbjct: 410 TVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIE------------ 457

Query: 291 VLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEV 350
                  D I A G+ Q+             +G++P++  Y+  I  +   R   + +++
Sbjct: 458 -------DAIRAFGKVQD-------------MGIRPNTVLYNAIILGLCKRRETHSAIDL 497

Query: 351 LKIMQQNNLKPQDSTIATL 369
              M  N   P +ST   L
Sbjct: 498 FAYMIGNGCMPNESTYTIL 516


>gi|15232243|ref|NP_191564.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181813|sp|Q9M1D8.1|PP288_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g60050
 gi|7076758|emb|CAB75920.1| putative protein [Arabidopsis thaliana]
 gi|332646485|gb|AEE80006.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 473

 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 63/257 (24%), Positives = 113/257 (43%), Gaps = 16/257 (6%)

Query: 425 LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLL 484
            R  + +Y LL  +F       E   M+  VD          +M ++    +  +   L+
Sbjct: 145 FRHTVNSYHLLMKIFAECG---EYKAMWRLVD----------EMVQDGFPTTARTFNLLI 191

Query: 485 KALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIP 541
            + G  G+ ++ +  F  SKT    P   +YN +L+SL+  ++      ++KQM   G  
Sbjct: 192 CSCGEAGLAKQAVVQFMKSKTFNYRPFKHSYNAILNSLLGVKQYKLIEWVYKQMLEDGFS 251

Query: 542 PNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNL 601
           P+  TYNI++     +        L   M RDGF P + TY  L+ IL        AL  
Sbjct: 252 PDVLTYNILLWTNYRLGKMDRFDRLFDEMARDGFSPDSYTYNILLHILGKGNKPLAALTT 311

Query: 602 LDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVN 661
           L+ +   GI   VL Y T++      G ++  ++ +++M +   +PD      + +GYV 
Sbjct: 312 LNHMKEVGIDPSVLHYTTLIDGLSRAGNLEACKYFLDEMVKAGCRPDVVCYTVMITGYVV 371

Query: 662 CGFHNSAMEALQVLSMR 678
            G  + A E  + ++++
Sbjct: 372 SGELDKAKEMFREMTVK 388



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 68/311 (21%), Positives = 119/311 (38%), Gaps = 55/311 (17%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQM---QSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVL 351
           +F+ +I +CG    +GLA+Q ++Q    ++   +P  H+Y+  + +++  +  +    V 
Sbjct: 186 TFNLLICSCGE---AGLAKQAVVQFMKSKTFNYRPFKHSYNAILNSLLGVKQYKLIEWVY 242

Query: 352 KIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKP 411
           K M ++   P   T   L     +  ++D  + L D+++R                    
Sbjct: 243 KQMLEDGFSPDVLTYNILLWTNYRLGKMDRFDRLFDEMAR-------------------- 282

Query: 412 ERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471
                          PD  TY +L  + G  N P       + ++  K +          
Sbjct: 283 -----------DGFSPDSYTYNILLHILGKGNKPLAA---LTTLNHMKEV---------- 318

Query: 472 NIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLG----TPTYNTVLHSLVEAQESHR 527
            I  S +    L+  L   G + E  +YF D     G       Y  ++   V + E  +
Sbjct: 319 GIDPSVLHYTTLIDGLSRAGNL-EACKYFLDEMVKAGCRPDVVCYTVMITGYVVSGELDK 377

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A E+F++M   G  PN  TYN MI    +   F+ A  L+  M   G  P  + Y+ L+ 
Sbjct: 378 AKEMFREMTVKGQLPNVFTYNSMIRGLCMAGEFREACWLLKEMESRGCNPNFVVYSTLVS 437

Query: 588 ILLDYGDFDEA 598
            L   G   EA
Sbjct: 438 YLRKAGKLSEA 448



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 65/138 (47%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TYN +LH L +  +   A+     MK  GI P+   Y  +ID  S     ++    +  M
Sbjct: 291 TYNILLHILGKGNKPLAALTTLNHMKEVGIDPSVLHYTTLIDGLSRAGNLEACKYFLDEM 350

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           V+ G  P  + YT +I   +  G+ D+A  +   ++++G   +V  YN++++  C  G  
Sbjct: 351 VKAGCRPDVVCYTVMITGYVVSGELDKAKEMFREMTVKGQLPNVFTYNSMIRGLCMAGEF 410

Query: 631 DVIEFIIEQMHQNKVQPD 648
               +++++M      P+
Sbjct: 411 REACWLLKEMESRGCNPN 428



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 80/190 (42%), Gaps = 3/190 (1%)

Query: 465 EMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQE 524
           E +  R+ +   H+ MK   +    + M R L+        P    T+N ++ S  EA  
Sbjct: 141 EQECFRHTVNSYHLLMKIFAECGEYKAMWR-LVDEMVQDGFPTTARTFNLLICSCGEAGL 199

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
           + +A+  F + KT    P   +YN +++    ++ +K    +   M+ DGF P  +TY  
Sbjct: 200 AKQAVVQFMKSKTFNYRPFKHSYNAILNSLLGVKQYKLIEWVYKQMLEDGFSPDVLTYNI 259

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
           L+      G  D    L D ++ +G   D   YN IL     KG    +  +    H  +
Sbjct: 260 LLWTNYRLGKMDRFDRLFDEMARDGFSPDSYTYN-ILLHILGKGN-KPLAALTTLNHMKE 317

Query: 645 VQPDPSTCHF 654
           V  DPS  H+
Sbjct: 318 VGIDPSVLHY 327


>gi|297839237|ref|XP_002887500.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333341|gb|EFH63759.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 989

 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 62/263 (23%), Positives = 115/263 (43%), Gaps = 16/263 (6%)

Query: 421 MRQKLR-PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMD------MARNNI 473
           M Q++  PD  T   +  +F N +  ++  + F +   A ++N  ++D        +N  
Sbjct: 200 MGQRMHFPDEVTMATVVRVFKN-SGEFDRADRFFKGWCAGKVNLDDLDLDSIDDFPKNGS 258

Query: 474 QHSHISMKNLLK----ALGAEGMIRELIQYFCDS----KTPLGTPTYNTVLHSLVEAQES 525
             S +++K  L      +GA   I + + +   S    + P  T T+NT++    +A   
Sbjct: 259 AQSPVNLKQFLSMELFKVGARNPIEKSLHFASGSDSSPRKPRLTSTFNTLIDLYGKAGRL 318

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
           + A  +F +M   G+P +  T+N MI  C        A +L+  M   G  P T TY  L
Sbjct: 319 NDAANLFSEMLKSGVPIDTVTFNTMIHTCGTHGHLSEAESLLKKMEEKGISPDTKTYNIL 378

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           + +  D GD + AL     +   G+  D + +  +L   C++  +   E ++ +M +N +
Sbjct: 379 LSLHADAGDIEAALKYYRNIRKVGLFPDTVTHRAVLHILCQRKMVAEAEAVMAEMDRNSI 438

Query: 646 QPDPSTCHFVFSGYVNCGFHNSA 668
           + D  +   +   YVN G    A
Sbjct: 439 RIDEHSVPVIMQMYVNEGLVGQA 461



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 100/484 (20%), Positives = 187/484 (38%), Gaps = 93/484 (19%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRG-LRNGMEVLKI 353
           +F+ +IH CG   +   AE L+ +M+  G+ P + TY+  + ++ +D G +   ++  + 
Sbjct: 339 TFNTMIHTCGTHGHLSEAESLLKKMEEKGISPDTKTYN-ILLSLHADAGDIEAALKYYRN 397

Query: 354 MQQNNLKPQDST-IATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPE 412
           +++  L P   T  A L + C + +   +AEA               A +A  D      
Sbjct: 398 IRKVGLFPDTVTHRAVLHILCQRKM---VAEA--------------EAVMAEMD------ 434

Query: 413 RAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNN 472
                    R  +R D  +  ++  ++ N     +   +F +          ++D     
Sbjct: 435 ---------RNSIRIDEHSVPVIMQMYVNEGLVGQAKALFER---------FQLDCVL-- 474

Query: 473 IQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPT----YNTVLHSLVEAQESHRA 528
              S  ++  ++     +G+  E    F   +   G       YN ++ +  +A+   +A
Sbjct: 475 ---SSTTLAAVMDVYAEKGLWVEAETVFYGKRNMTGQRNDVLEYNVMIKAYGKAKLHEKA 531

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
           + IFK MK  G  P+  TYN +I   + +     A  +++ M+  G  P   TY ALI  
Sbjct: 532 LSIFKGMKNQGTWPDECTYNSLIQMLAGVDLVDDAQRILAEMLDSGCKPGCKTYAALIAS 591

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
            +  G   +A++L + +   G+  + ++Y +++    E G ++      + M ++ VQ +
Sbjct: 592 YVRLGLLSDAVDLYEAMKKTGVKPNEVVYGSLINGFAESGMVEEAIQYFKLMEEHGVQSN 651

Query: 649 PSTCHFVFSGYVNCGFHNSAMEALQVL-------------SMRMLCEEVSTLEEKRSDFE 695
                 +   Y   G    A      +             SM  LC ++  + E  S F 
Sbjct: 652 HIVLTSLIKAYSKVGCLEEARRVYDKMKDSGGGPDVAASNSMLSLCADLGIVSEAESIFN 711

Query: 696 DL----------------------ILAEDSEA-----ESRILQFCEDSNENLAFTAALLQ 728
           DL                      +L E  E      ES +L+ C   N+ LA  AA  Q
Sbjct: 712 DLREKGTCDVISFATMMYLYKGMGMLDEAIEVAEEMRESGLLRDCTSFNQVLACYAADGQ 771

Query: 729 LRWC 732
           LR C
Sbjct: 772 LREC 775



 Score = 47.0 bits (110), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 66/358 (18%), Positives = 137/358 (38%), Gaps = 22/358 (6%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A  L   M+  G++P+   Y   I        +   ++  K+M+++ ++     + +L  
Sbjct: 601 AVDLYEAMKKTGVKPNEVVYGSLINGFAESGMVEEAIQYFKLMEEHGVQSNHIVLTSLIK 660

Query: 372 ECSKALELDLAEALLDQISRCTNPKPFSA---FLAACDTMDKPERAIKIFAKMRQKLRPD 428
             SK   L+ A  + D++         +A    L+ C  +     A  IF  +R+K   D
Sbjct: 661 AYSKVGCLEEARRVYDKMKDSGGGPDVAASNSMLSLCADLGIVSEAESIFNDLREKGTCD 720

Query: 429 IRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALG 488
           + ++  +  L+  +      G +   ++ A+       +M  + +     S   +L    
Sbjct: 721 VISFATMMYLYKGM------GMLDEAIEVAE-------EMRESGLLRDCTSFNQVLACYA 767

Query: 489 AEGMIRELIQYF----CDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNA 544
           A+G +RE  + F     + K  L   T+ T+   L +      A+   +       P   
Sbjct: 768 ADGQLRECCELFHEMLVERKLLLDWGTFKTLFTLLKKGGVPSEAVAQLQTAYNEAKP--L 825

Query: 545 ATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDL 604
           AT  I     S +  +  A      + RD    +   Y A+I      GD D AL     
Sbjct: 826 ATPAITATLFSAMGLYAYALESCQELTRDEIPREHYAYNAVIYTYSASGDIDMALKTYMR 885

Query: 605 VSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNC 662
           +  +G+  DV+    ++    + G ++ ++ +  ++   +++P+ S    V   YV+ 
Sbjct: 886 MQEKGLEPDVVTQAYLVGIYGKAGMVEGVKRVHSRLTFGELEPNQSLFKAVRDAYVSA 943


>gi|357144169|ref|XP_003573197.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g43820-like [Brachypodium distachyon]
          Length = 531

 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 93/403 (23%), Positives = 172/403 (42%), Gaps = 35/403 (8%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           + S+V++A G    +   +     + +  L PS HT +  IRA+   +   +  + L+IM
Sbjct: 99  ALSNVVNA-GNLSGAATVDLFDWAISNAKLPPSLHTCNTVIRALGRRKFFASIEDALEIM 157

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALL--DQIS-----RCTNPKPFSAFLAA-CD 406
           ++N + P  +T+  +      + +++ A  LL  DQ        C     FSA +   C 
Sbjct: 158 RKNGIFPDPTTLEIIIDSLVASRQINRAVQLLKSDQFGFGFCQTCHRKVAFSALINCLCQ 217

Query: 407 TMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINA--I 464
                   + + + + Q  R D    +L   ++ +V   +     F +VD  +   A  +
Sbjct: 218 -----RSHVGVASSLLQAARGD--HLDLDKHVYNDVIGGWAR---FGRVDKLEHFWAMML 267

Query: 465 EMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYF----CDSKTPLGTPTYNTVLHSLV 520
           E  +A + + H H     L++ALG  G   E ++ F     +   P  T  YN ++ + +
Sbjct: 268 EDGLAPDEVSHCH-----LIEALGRAGQPEEGLKVFEKMVHEGYGPTTT-AYNALIFNFI 321

Query: 521 EAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASAL--VSMMVRDGFYPQ 578
            + +  R ++ +K M     PPN+ATY  MI   +++R  + A AL     M   G  P 
Sbjct: 322 SSGDLDRCIKYYKDMVDKNCPPNSATYCKMIR--ALLRARRVADALQMFGDMFTRGVLPN 379

Query: 579 TMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIE 638
           T   T  I+ L  YG    AL +       G    +  Y  +L +    G+  ++  I E
Sbjct: 380 TGDITLFIEPLCTYGPPHAALMIYRKSRKAGCTISLKAYKLLLARLARFGKSGIVLKIWE 439

Query: 639 QMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLC 681
           +M ++    D     F+ +G  N G  ++A+  ++   M+ +C
Sbjct: 440 EMQESGHPSDKEIYEFIVNGLCNVGKLDAAVSVVEESLMKGIC 482


>gi|147833070|emb|CAN77584.1| hypothetical protein VITISV_034996 [Vitis vinifera]
          Length = 913

 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 80/164 (48%), Gaps = 1/164 (0%)

Query: 508 GTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALV 567
           G  +YN++L++L+E+ +   A   F   +T G+ PN  TYNI+I      + F  A  L+
Sbjct: 88  GIRSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAKELL 147

Query: 568 SMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEK 627
           + M   GF P   +Y  LI  L   G   +AL L D +   G+  DV  YN ++    +K
Sbjct: 148 NWMWGQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKK 207

Query: 628 GRIDVIEFIIEQMHQN-KVQPDPSTCHFVFSGYVNCGFHNSAME 670
           G I     I E++ +   V P+  + + + +G   CG  + + E
Sbjct: 208 GDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFE 251



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 93/473 (19%), Positives = 186/473 (39%), Gaps = 80/473 (16%)

Query: 222 HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPI 281
           H +LSIF       S TR            H++      KL  +  ++  +    LDI  
Sbjct: 24  HSALSIFD------SVTRFPGYSHTPYVFHHILKRLFDPKLVAHAYAKNSMPDQALDIFQ 77

Query: 282 PLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSD 341
            ++ +   +    S++ +++A   +     AE   L  +++GL P+  TY+  I+     
Sbjct: 78  RMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRK 137

Query: 342 RGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAF 401
           +      E+L  M      P   +  TL    +K   +  A  L D++            
Sbjct: 138 KQFDKAKELLNWMWGQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEM------------ 185

Query: 402 LAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI 461
                    PER +           PD+  Y +L   F      +++G++ +  +  +R+
Sbjct: 186 ---------PERGVT----------PDVACYNILIDGF------FKKGDILNASEIWERL 220

Query: 462 NAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVE 521
             ++      NI   ++ +  L K  G      E+      ++      TY+T++H L  
Sbjct: 221 --LKGPSVYPNIPSYNVMINGLCKC-GKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCG 277

Query: 522 AQESHRAMEIFKQMKTCGIPPNAATYNIMI----------DCCSIIRCFKSAS--ALVS- 568
           +     A  ++K+M   G+ P+   YN M+          +C  + +  +      +VS 
Sbjct: 278 SGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRTVVSY 337

Query: 569 -MMVRDGF--------------YPQ------TMTYTALIKILLDYGDFDEALNLLDLVSL 607
            +++R  F               P+      +MTY  L+  L   G  ++AL++L+    
Sbjct: 338 NILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAEN 397

Query: 608 EGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYV 660
                D   Y++++   C +GR+D +  +++QM ++  +P+P  C+ V +G+V
Sbjct: 398 GRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPYVCNAVINGFV 450



 Score = 76.3 bits (186), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 131/290 (45%), Gaps = 16/290 (5%)

Query: 389 ISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKL--RPDIRTYELLFSLFGNVNAPY 446
           + R  +PK   A   A ++M  P++A+ IF +M +    +P IR+Y  L +     N   
Sbjct: 50  LKRLFDPK-LVAHAYAKNSM--PDQALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWD 106

Query: 447 EEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTP 506
           E  + F   ++        M ++ N +Q  +I +K   +    +   +EL+ +       
Sbjct: 107 EAESFFLYFET--------MGLSPN-LQTYNILIKISCRKKQFDKA-KELLNWMWGQGFS 156

Query: 507 LGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASAL 566
               +Y T+++SL +      A+++F +M   G+ P+ A YNI+ID         +AS +
Sbjct: 157 PDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEI 216

Query: 567 VSMMVRD-GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKAC 625
              +++    YP   +Y  +I  L   G FDE+  +   +       D+  Y+T++   C
Sbjct: 217 WERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLC 276

Query: 626 EKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
             G +D    + ++M +N V PD    + + +GY+  G     +E  +V+
Sbjct: 277 GSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVM 326



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 104/547 (19%), Positives = 205/547 (37%), Gaps = 88/547 (16%)

Query: 121 NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLC 180
           N + Y ++++  C+    ++A  L+ ++  + G  P +  Y + + + AK   M  A   
Sbjct: 123 NLQTYNILIKISCRKKQFDKAKELLNWMWGQ-GFSPDVFSYGTLINSLAKNGYMSDALKL 181

Query: 181 LDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSL--SIFSLRKFVWSFT 238
            D M  R V  +   Y  L+     + ++    EIWE  +K  S+  +I S    +    
Sbjct: 182 FDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLC 241

Query: 239 RLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSD 298
           +      ++E    M            +   G+      D+              +++S 
Sbjct: 242 KCGKFDESFEIWHRM-----------KKNERGQ------DL--------------YTYST 270

Query: 299 VIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNN 358
           +IH    + N   A ++  +M   G+ P    Y+  +   +    +   +E+ K+M++  
Sbjct: 271 LIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEG 330

Query: 359 LKPQDSTIATLSV------ECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPE 412
            +    T+ + ++      E +K  E      LL +   C +   +   +          
Sbjct: 331 CR----TVVSYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLN 386

Query: 413 RAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNN 472
           +A+ I  +     R D+ T    F+    +N    EG          R++ +        
Sbjct: 387 KALSILEEAENG-RGDLDT----FAYSSMINGLCREG----------RLDEVA------- 424

Query: 473 IQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIF 532
                             G++ ++ ++ C     +     N V++  V A +   A+  F
Sbjct: 425 ------------------GVLDQMTKHGCKPNPYVC----NAVINGFVRASKLEDALRFF 462

Query: 533 KQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDY 592
             M + G  P   TYN +I+  S    F  A ALV  M++ G+ P  +TY+ L+  L   
Sbjct: 463 GNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLQKGWKPNMITYSLLMNGLCQG 522

Query: 593 GDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTC 652
              D ALNL      +G   DV ++N I+   C  G+++    +  +M Q    P+  T 
Sbjct: 523 KKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRNCVPNLVTH 582

Query: 653 HFVFSGY 659
           + +  G+
Sbjct: 583 NTLMEGF 589



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 125/654 (19%), Positives = 256/654 (39%), Gaps = 48/654 (7%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLD-L 183
           Y  ++ +L K GY+ +A  L   + ER G+ P +  YN  +    K   +++A+   + L
Sbjct: 162 YGTLINSLAKNGYMSDALKLFDEMPER-GVTPDVACYNILIDGFFKKGDILNASEIWERL 220

Query: 184 MDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH-YSLSIFSLRKFVWSFTRLRD 242
           +    V  N  +Y  ++             EIW    K+     +++    +       +
Sbjct: 221 LKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGN 280

Query: 243 LKSAYETLQHMVALAMMGKLYI-NRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIH 301
           L  A    + M    +   + + N    G LR+ R++  + L  +   +  R   S  I 
Sbjct: 281 LDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRTVVSYNIL 340

Query: 302 ACGRTQNSGLAEQLMLQ--MQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNL 359
             G  +N+ + E + +   +        S TY   +  +  +  L   + +L+  +    
Sbjct: 341 IRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRG 400

Query: 360 KPQDSTIATLSVECSKALELDLAEALLDQISR-CTNPKPF--SAFLAACDTMDKPERAIK 416
                  +++     +   LD    +LDQ+++    P P+  +A +       K E A++
Sbjct: 401 DLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPYVCNAVINGFVRASKLEDALR 460

Query: 417 IFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQH 475
            F  M  K   P + TY  L              N  S+ +      A+  +M +   + 
Sbjct: 461 FFGNMVSKGCFPTVVTYNTLI-------------NGLSKAERFSEAYALVKEMLQKGWKP 507

Query: 476 SHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIF 532
           + I+   L+  L     +   +  +C +      P    +N ++H L  + +   A++++
Sbjct: 508 NMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLY 567

Query: 533 KQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDY 592
            +MK     PN  T+N +++    +R F+ AS +   +++ G  P  ++Y   +K L   
Sbjct: 568 SEMKQRNCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQYGLQPDIISYNITLKGLCSC 627

Query: 593 GDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE-KGRIDVIEFIIEQMHQNKVQPDPST 651
               +A+  L+     G+    + +N +++     KG ++ + F+   M  N   P    
Sbjct: 628 HRISDAVGFLNDAVDRGVLPTAITWNILVQGYLALKGYMEPV-FVPASMKGN---PGMQM 683

Query: 652 CHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDFEDLI------LAEDSEA 705
            +F   G+V C   +S ++  Q +    L  E  TL +   +F  +I      L     +
Sbjct: 684 RYF---GFV-CDKLSSPLDVQQPVLCLFLVSE--TLRKSFPNFMCIIAEWYVYLPAVVHS 737

Query: 706 ESRILQFCEDSNENLAFTAALLQLRWCTIVGFPISWSLDRASGLEDSQTNSNSR 759
            SR  ++ +D    +     L  L + T    PI W+ D+ S +  +   +N+R
Sbjct: 738 PSRSQRYHQD---QILMMQKLSGLMYQTQE--PIRWTRDQVSAIPMTXMTTNAR 786


>gi|50878351|gb|AAT85126.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 920

 Score = 79.7 bits (195), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 77/363 (21%), Positives = 152/363 (41%), Gaps = 13/363 (3%)

Query: 305 RTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDS 364
           ++ + G+A  +  QM+  G+ P   T     +A   D  +   +E ++ M+   L+    
Sbjct: 195 QSGDPGMAAMVYGQMRIAGVLPDEFTVAIMAKAYCRDGRVAQAVEFVEEMEGMGLEVNLV 254

Query: 365 TI-ATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKPERAIKIFAK 420
              A +   C      D A  +L+ + R     N   ++  +       + E A ++  +
Sbjct: 255 AYHAVMDCYCGMGWTED-ARRILESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKE 313

Query: 421 MRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISM 480
           M++    DI   E+ + +   +N   + G M    D A R+     D   +     + +M
Sbjct: 314 MKET--GDIVVDEVAYGMM--INGYCQRGRM----DDATRVRNEMRDAGIHVNLFVYNTM 365

Query: 481 KNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGI 540
            N L  LG    +++++Q   D        +YNT++          +A E+ + M   G+
Sbjct: 366 INGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGL 425

Query: 541 PPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALN 600
                TYN ++     +     A  L  +M++ G  P  ++ + L+  L   G  ++ALN
Sbjct: 426 AATTLTYNTLLKGFCSLHAIDDALRLWFLMLKRGVAPNEISCSTLLDGLFKAGKTEQALN 485

Query: 601 LLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYV 660
           L       G+  +V+ +NT++   C+ GR+   E ++++M + +  PD  T   +F GY 
Sbjct: 486 LWKETLARGLAKNVITFNTVINGLCKIGRMAEAEELLDRMKELRCPPDSLTYRTLFDGYC 545

Query: 661 NCG 663
             G
Sbjct: 546 KLG 548



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 116/582 (19%), Positives = 234/582 (40%), Gaps = 55/582 (9%)

Query: 112 MMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKL 171
           M E  +I ++   Y +M+   C+ G +++A+ +   + +  GI+  L VYN+ +    KL
Sbjct: 314 MKETGDIVVDEVAYGMMINGYCQRGRMDDATRVRNEMRDA-GIHVNLFVYNTMINGLCKL 372

Query: 172 HSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH----YSLSI 227
             M      L  M+   +  ++ +Y  L+     + ++    E+    +++     +L+ 
Sbjct: 373 GRMEEVQKVLQEMEDVGMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTY 432

Query: 228 FSLRKFVWSFTRLRD-LKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNAL 286
            +L K   S   + D L+  +  L+  VA     ++  +   +G  ++ + +  + L   
Sbjct: 433 NTLLKGFCSLHAIDDALRLWFLMLKRGVA---PNEISCSTLLDGLFKAGKTEQALNLWKE 489

Query: 287 PVMKVLR---WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRG 343
            + + L     +F+ VI+   +      AE+L+ +M+ L   P S TY            
Sbjct: 490 TLARGLAKNVITFNTVINGLCKIGRMAEAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQ 549

Query: 344 LRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQIS-RCTNPK--PFSA 400
           L     ++  M+     P      +       A +      +  ++S R  +P    + A
Sbjct: 550 LGTATHLMNKMEHLGFAPSVEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGA 609

Query: 401 FLAA-CDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAK 459
            +A  C   +  E     F  +   + P++     L S F      Y+EG    +VD A 
Sbjct: 610 LIAGWCKEGNLHEACNLYFEMVNNGMNPNVFICSALMSCF------YKEG----KVDEAN 659

Query: 460 RI--NAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLH 517
            +    + +DM    I    IS   + K       I  ++    D         +N ++ 
Sbjct: 660 LVLQKLVNIDM----IPGCSISTIEIDK-------ISHVVDTIADGNPHSANVMWNVIIF 708

Query: 518 SLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYP 577
            L ++     A  +F+ ++     P+  TY+ +I  C+       A +L  +M+  G  P
Sbjct: 709 GLCKSGRIADAKSLFESLRNKRFLPDNFTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTP 768

Query: 578 QTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI------- 630
             +TY +LI  L   G    A+NL + +  +GI  + + YNT++ + C++G+        
Sbjct: 769 NIITYNSLIYGLCKSGKLSRAVNLFNKLQSKGISPNGITYNTLIDEYCKEGKTTEAFKLK 828

Query: 631 -DVIE--------FIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
             ++E         +++QM +N V P+  T   +  GY+  G
Sbjct: 829 QKMVEEGYMEEAIKLLDQMIENNVDPNYITYCTLIHGYIKSG 870



 Score = 55.1 bits (131), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/185 (20%), Positives = 82/185 (44%), Gaps = 36/185 (19%)

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
           +A+E  ++M+  G+  N   Y+ ++DC   +   + A  ++  + R G  P  +TYT L+
Sbjct: 236 QAVEFVEEMEGMGLEVNLVAYHAVMDCYCGMGWTEDARRILESLQRKGLSPNVVTYTLLV 295

Query: 587 K-----------------------ILLD-------------YGDFDEALNLLDLVSLEGI 610
           K                       I++D              G  D+A  + + +   GI
Sbjct: 296 KGYCKDGRMEEAERVVKEMKETGDIVVDEVAYGMMINGYCQRGRMDDATRVRNEMRDAGI 355

Query: 611 PHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAME 670
             ++ +YNT++   C+ GR++ ++ ++++M    ++PD  + + +  GY   G    A E
Sbjct: 356 HVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYNTLIDGYCREGSMRKAFE 415

Query: 671 ALQVL 675
             +++
Sbjct: 416 MCRMM 420


>gi|297827821|ref|XP_002881793.1| EMB2654 [Arabidopsis lyrata subsp. lyrata]
 gi|297327632|gb|EFH58052.1| EMB2654 [Arabidopsis lyrata subsp. lyrata]
          Length = 822

 Score = 79.7 bits (195), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 80/373 (21%), Positives = 148/373 (39%), Gaps = 22/373 (5%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           ++  +I+A GR      A  LM  M    + PS  TY+  I A  S    R  +EV K M
Sbjct: 180 TYDALINAHGRAGQWRWAMNLMDDMLRAAIAPSRSTYNNLINACGSSGNWRQALEVCKKM 239

Query: 355 QQNNLKPQDST--IATLSVECSKALELDLAEALLDQISRC-TNPKPFSAFLAACDTMDKP 411
             N + P   T  I   + +  +     L+   L + ++   +   F+  +     + + 
Sbjct: 240 TDNGVGPDLVTHNIVLSAYKSGRQYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQS 299

Query: 412 ERAIKIFAKMRQK---LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
            +A+ +F  MR K    RPD+ T+  +  L+          ++  ++++ +   A+   M
Sbjct: 300 SQALDVFNSMRDKRAECRPDVVTFTSIMHLY----------SVRGEIENCR---AVFEAM 346

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQES 525
               ++ + +S   L+ A    GM    +  F D K     P   +Y ++L+S   +++ 
Sbjct: 347 LAEGLKPNIVSYNALMGAYAVHGMSENALSVFGDIKRNGIVPDVVSYTSLLNSYGRSRQP 406

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
            +A E+F  M+     PN  TYN +ID          A  +   M +DG  P  ++   L
Sbjct: 407 GKAKEVFLMMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGTKPNVVSVCTL 466

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           +              +L      GI  +   YN+ +        ++    + + M + KV
Sbjct: 467 LAACSRSKKKVNVETVLSAAQSRGINLNTAAYNSAIGSYINAAELEKAIALYQTMRKKKV 526

Query: 646 QPDPSTCHFVFSG 658
           + D  T   + SG
Sbjct: 527 KADSVTFTILISG 539



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 70/345 (20%), Positives = 148/345 (42%), Gaps = 28/345 (8%)

Query: 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
           R +++++I+ACG + N   A ++  +M   G+ P   T++  + A  S R     +   +
Sbjct: 213 RSTYNNLINACGSSGNWRQALEVCKKMTDNGVGPDLVTHNIVLSAYKSGRQYSKALSYFE 272

Query: 353 IMQQNNLKPQDSTIATLSVECSKAL-----ELDLAEALLDQISRC-TNPKPFSAFLAACD 406
           +M+   ++P D+T   + + C   L      LD+  ++ D+ + C  +   F++ +    
Sbjct: 273 LMKGAKVRP-DTTTFNIIIYCLSKLGQSSQALDVFNSMRDKRAECRPDVVTFTSIMHLYS 331

Query: 407 TMDKPERAIKIF-AKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIE 465
              + E    +F A + + L+P+I +Y  L   +  V+   E              NA+ 
Sbjct: 332 VRGEIENCRAVFEAMLAEGLKPNIVSYNALMGAYA-VHGMSE--------------NALS 376

Query: 466 M--DMARNNIQHSHISMKNLLKALGAE---GMIRELIQYFCDSKTPLGTPTYNTVLHSLV 520
           +  D+ RN I    +S  +LL + G     G  +E+       +      TYN ++ +  
Sbjct: 377 VFGDIKRNGIVPDVVSYTSLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYG 436

Query: 521 EAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTM 580
                  A+EIF+QM+  G  PN  +   ++  CS  +   +   ++S     G    T 
Sbjct: 437 SNGFLAEAVEIFRQMEQDGTKPNVVSVCTLLAACSRSKKKVNVETVLSAAQSRGINLNTA 496

Query: 581 TYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKAC 625
            Y + I   ++  + ++A+ L   +  + +  D + +  ++  +C
Sbjct: 497 AYNSAIGSYINAAELEKAIALYQTMRKKKVKADSVTFTILISGSC 541



 Score = 69.3 bits (168), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 64/278 (23%), Positives = 131/278 (47%), Gaps = 28/278 (10%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           S++ ++++ GR++  G A+++ L M+    +P+  TY+  I A  S+  L   +E+ + M
Sbjct: 392 SYTSLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQM 451

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQI-SRCT--NPKPFSAFLAACDTMDKP 411
           +Q+  KP   ++ TL   CS++ +    E +L    SR    N   +++ + +     + 
Sbjct: 452 EQDGTKPNVVSVCTLLAACSRSKKKVNVETVLSAAQSRGINLNTAAYNSAIGSYINAAEL 511

Query: 412 ERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVN-APYEEGNMFSQVDSAKRINAIEMDMA 469
           E+AI ++  MR +K++ D  T+ +L S  G+   + Y E   + +            +M 
Sbjct: 512 EKAIALYQTMRKKKVKADSVTFTILIS--GSCRMSKYPEAISYLK------------EME 557

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESH 526
             +I  +     ++L A   +G + E    F   K     P    Y ++LH+   +++  
Sbjct: 558 DLSIPLTKEVYSSVLCAYSKQGQVTEAESIFNQMKMAGCKPDVIAYTSMLHAYNASEKWG 617

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSAS 564
           +A E+F +M+  GI P++      I C +++R F    
Sbjct: 618 KACELFLEMEANGIEPDS------IACSALMRAFNKGG 649



 Score = 47.4 bits (111), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 45/214 (21%), Positives = 83/214 (38%), Gaps = 30/214 (14%)

Query: 489 AEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYN 548
           A G+  E+ ++ C         TY+ ++++   A +   AM +   M    I P+ +TYN
Sbjct: 162 ARGLFFEMQKWSCKPDAE----TYDALINAHGRAGQWRWAMNLMDDMLRAAIAPSRSTYN 217

Query: 549 IMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLE 608
            +I+ C     ++ A  +   M  +G  P  +T+  ++        + +AL+  +L+   
Sbjct: 218 NLINACGSSGNWRQALEVCKKMTDNGVGPDLVTHNIVLSAYKSGRQYSKALSYFELMKGA 277

Query: 609 GIPHDVLLYNTILKKACEKG-------------------RIDVIEFIIEQMHQNKVQPDP 649
            +  D   +N I+    + G                   R DV+ F    MH   V+ + 
Sbjct: 278 KVRPDTTTFNIIIYCLSKLGQSSQALDVFNSMRDKRAECRPDVVTF-TSIMHLYSVRGEI 336

Query: 650 STCHFVFSGYVNCGF------HNSAMEALQVLSM 677
             C  VF   +  G       +N+ M A  V  M
Sbjct: 337 ENCRAVFEAMLAEGLKPNIVSYNALMGAYAVHGM 370


>gi|224713520|gb|ACN62067.1| PPR-816 [Zea mays]
          Length = 816

 Score = 79.7 bits (195), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 86/407 (21%), Positives = 159/407 (39%), Gaps = 57/407 (14%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           ++S V+HA  + +    AE  + QM + G+ P + TY+  I    S    +  + V K M
Sbjct: 258 TYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEM 317

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQIS-RCTNPKPFSAFL----------- 402
           ++ ++ P    + TL     K  ++  A  + D ++ +  NP  FS  +           
Sbjct: 318 RRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCL 377

Query: 403 -----------------------------AACDTMDKPERAIKIFAKMR-QKLRPDIRTY 432
                                        A C  +DK   A+ IF +MR   ++P + TY
Sbjct: 378 VDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDK---AMIIFNEMRDHGVKPHVVTY 434

Query: 433 ELLFSLFGNVNAPYEEGNMFSQ-VDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEG 491
             + +    +    +    F+Q +D       +    A + +     +  +LLKA     
Sbjct: 435 MTVIAALCRIGKMDDAMEKFNQMIDQG----VVPDKYAYHCLIQGFCTHGSLLKA----- 485

Query: 492 MIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI 551
             +ELI    ++   L    + +++++L +      A  IF      G+ P+A  YN+++
Sbjct: 486 --KELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLM 543

Query: 552 DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIP 611
           D   ++   + A  +   MV  G  P  + Y  L+      G  DE L+L   +  +GI 
Sbjct: 544 DGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIK 603

Query: 612 HDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
              +LYN I+    E GR    +    +M ++ +  +  T   V  G
Sbjct: 604 PSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRG 650



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 78/392 (19%), Positives = 151/392 (38%), Gaps = 24/392 (6%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGL--QPSSHTYDGFIRAIVSDRGLRNGMEVL 351
           +S++ ++ +      SG A+ L+  M   G    P    Y+  I     +  +    ++ 
Sbjct: 185 FSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLF 244

Query: 352 KIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPK--PFSAFLAACDTM 408
           K M Q  + P   T +++     KA  +D AEA L Q +++   P    ++  +    + 
Sbjct: 245 KEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSST 304

Query: 409 DKPERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMD 467
            + + A+++F +MR Q + PD+     L           E  ++F               
Sbjct: 305 GQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDT------------- 351

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRELIQYF----CDSKTPLGTPTYNTVLHSLVEAQ 523
           MA         S   +L     +G + ++   F     D   P+   T+N ++ +     
Sbjct: 352 MAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPV-ICTFNVLIKAYANCG 410

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
              +AM IF +M+  G+ P+  TY  +I     I     A    + M+  G  P    Y 
Sbjct: 411 MLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYH 470

Query: 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
            LI+    +G   +A  L+  +   G+  D++ + +I+   C+ GR+   + I +     
Sbjct: 471 CLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNV 530

Query: 644 KVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
            + PD    + +  GY   G    A+     +
Sbjct: 531 GLHPDAVVYNMLMDGYCLVGKMEKALRVFDAM 562



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 74/301 (24%), Positives = 127/301 (42%), Gaps = 34/301 (11%)

Query: 381 LAEALLDQI-SRCTNPK-------PFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTY 432
           LA AL ++  SR   P+        ++  +  C    +PE A+  F    Q LR  +R  
Sbjct: 91  LAVALFNRAASRAQGPRVLSPTSYTYAILMDCCTRAHRPELALAFFG---QLLRTGLRVD 147

Query: 433 ELLFSLFGNVNAPYEEGNMFSQVDSAKRIN-AIEMDMARN---NIQHSHISMKNLLKAL- 487
            ++ S            ++      AKR + A+++ + R           S   LLK+L 
Sbjct: 148 AIIAS------------HLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYNILLKSLC 195

Query: 488 --GAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPP 542
             G  G   +L++   +  T + +P    YNTV+    +  + ++A ++FK+M   GIPP
Sbjct: 196 NQGKSGQADDLLRMMAEGGT-VCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPP 254

Query: 543 NAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL 602
           +  TY+ ++      R    A A +  MV  G  P   TY  LI      G + EA+ + 
Sbjct: 255 DLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVF 314

Query: 603 DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNC 662
             +  + I  DV+  NT++   C+ G+I     + + M      PD  +   + +GY   
Sbjct: 315 KEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATK 374

Query: 663 G 663
           G
Sbjct: 375 G 375



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 73/316 (23%), Positives = 132/316 (41%), Gaps = 13/316 (4%)

Query: 359 LKPQDSTIATLSVECSKALELDLAEALLDQISRC---TNPKPFSAFLAACDTMDKPERAI 415
           L P   T A L   C++A   +LA A   Q+ R     +    S  L       + + A+
Sbjct: 109 LSPTSYTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRTDEAL 168

Query: 416 KIFAKMRQKLR--PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNI 473
            I      +L   PD+ +Y +L     N     +  ++   +     + + ++ +A N +
Sbjct: 169 DILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDV-VAYNTV 227

Query: 474 QHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFK 533
                   ++ KA     + +E++Q       P    TY++V+H+L +A+   +A    +
Sbjct: 228 IDGFFKEGDVNKACD---LFKEMVQ----RGIPPDLVTYSSVVHALCKARAMDKAEAFLR 280

Query: 534 QMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYG 593
           QM   G+ P+  TYN +I   S    +K A  +   M R    P  +    L+  L  YG
Sbjct: 281 QMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYG 340

Query: 594 DFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCH 653
              EA ++ D ++++G   DV  Y  +L     KG +  +  + + M  + + P   T +
Sbjct: 341 KIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFN 400

Query: 654 FVFSGYVNCGFHNSAM 669
            +   Y NCG  + AM
Sbjct: 401 VLIKAYANCGMLDKAM 416



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/268 (23%), Positives = 115/268 (42%), Gaps = 20/268 (7%)

Query: 413 RAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471
           +A  +F +M Q+ + PD+ TY  +        A          +D A+   A    M   
Sbjct: 239 KACDLFKEMVQRGIPPDLVTYSSVVHALCKARA----------MDKAE---AFLRQMVNK 285

Query: 472 NIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRA 528
            +   + +  NL+    + G  +E ++ F + +     P     NT++ SL +  +   A
Sbjct: 286 GVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEA 345

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
            ++F  M   G  P+  +Y IM++  +   C    + L  +M+ DG  P   T+  LIK 
Sbjct: 346 RDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKA 405

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
             + G  D+A+ + + +   G+   V+ Y T++   C  G++D       QM    V PD
Sbjct: 406 YANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPD 465

Query: 649 PSTCHFVFSGYVNCGFHNSAMEALQVLS 676
               H +  G+     H S ++A +++S
Sbjct: 466 KYAYHCLIQGFCT---HGSLLKAKELIS 490



 Score = 59.3 bits (142), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 81/178 (45%), Gaps = 7/178 (3%)

Query: 515 VLHSLVEAQESHRAMEIF-KQMKTCGIPPNAATYNIMIDCCSIIRCFKSASA--LVSMMV 571
           +L    EA+ +  A++I   +    G  P+  +YNI++   S+    KS  A  L+ MM 
Sbjct: 154 LLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYNILLK--SLCNQGKSGQADDLLRMMA 211

Query: 572 RDGFY--PQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
             G    P  + Y  +I      GD ++A +L   +   GIP D++ Y++++   C+   
Sbjct: 212 EGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARA 271

Query: 630 IDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTL 687
           +D  E  + QM    V PD  T + +  GY + G    A+   + +  + +  +V  L
Sbjct: 272 MDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVAL 329



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 112/547 (20%), Positives = 215/547 (39%), Gaps = 48/547 (8%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y  ++    K G + +A +L   + +R GI P L  Y+S + A  K  +M  A   L  M
Sbjct: 224 YNTVIDGFFKEGDVNKACDLFKEMVQR-GIPPDLVTYSSVVHALCKARAMDKAEAFLRQM 282

Query: 185 DSRMVGKNEVTYTELL----KLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRL 240
            ++ V  +  TY  L+        W++ +    E+    I    +++ +L   +  + ++
Sbjct: 283 VNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKI 342

Query: 241 RDLKSAYETLQHMVALAMMGK---------LYINRTSEGRL--RSSRLDIPIPLNALPVM 289
           ++ +  ++T+      AM G+         +     ++G L   +   D+ +     PV+
Sbjct: 343 KEARDVFDTM------AMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPVI 396

Query: 290 KVLRWSFSDVIHACGRTQNSGLAEQLML---QMQSLGLQPSSHTYDGFIRAIVSDRGLRN 346
                +F+ +I A     N G+ ++ M+   +M+  G++P   TY   I A+     + +
Sbjct: 397 ----CTFNVLIKA---YANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDD 449

Query: 347 GMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACD 406
            ME    M    + P       L         L  A+ L+ +I           F +  +
Sbjct: 450 AMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIIN 509

Query: 407 TMDKPER---AIKIF-AKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRIN 462
            + K  R   A  IF   +   L PD   Y +L   +  V    +   +F  + SA    
Sbjct: 510 NLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSA---- 565

Query: 463 AIEMDM-ARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVE 521
            IE ++     + + +  +  + + L    + RE++Q      T L    YN ++  L E
Sbjct: 566 GIEPNVVGYGTLVNGYCKIGRIDEGLS---LFREMLQKGIKPSTIL----YNIIIDGLFE 618

Query: 522 AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMT 581
           A  +  A   F +M   GI  N  TY+I++      RCF  A  L   +         +T
Sbjct: 619 AGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIIT 678

Query: 582 YTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMH 641
              +I  +      +EA +L   +S  G+    + Y+ ++    ++G ++  E +   M 
Sbjct: 679 LNTMIAGMFQTRRVEEAKDLFASISRSGLVPCAVTYSIMITNLIKEGLVEEAEDMFSSMQ 738

Query: 642 QNKVQPD 648
               +PD
Sbjct: 739 NAGCEPD 745



 Score = 49.7 bits (117), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 69/321 (21%), Positives = 118/321 (36%), Gaps = 39/321 (12%)

Query: 382 AEALLDQISRCTNP---KPFSAFLAA---------CDTMDKPERAIKIF------AKMRQ 423
           A  LLD++ R   P   +  + FLAA         C +   P  A+ +F      A+  +
Sbjct: 50  AHDLLDELQRRGTPVLDRDLNGFLAALARAPSSAACGS--GPALAVALFNRAASRAQGPR 107

Query: 424 KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNL 483
            L P   TY +L       + P      F Q             + R  ++   I   +L
Sbjct: 108 VLSPTSYTYAILMDCCTRAHRPELALAFFGQ-------------LLRTGLRVDAIIASHL 154

Query: 484 LKALGAEGMIRELIQYFCDSKTPLG-TP---TYNTVLHSLVEAQESHRAMEIFKQMKTCG 539
           LK         E +         LG  P   +YN +L SL    +S +A ++ + M   G
Sbjct: 155 LKGFCEAKRTDEALDILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEGG 214

Query: 540 I--PPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDE 597
               P+   YN +ID          A  L   MV+ G  P  +TY++++  L      D+
Sbjct: 215 TVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDK 274

Query: 598 ALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFS 657
           A   L  +  +G+  D   YN ++      G+      + ++M +  + PD    + +  
Sbjct: 275 AEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMG 334

Query: 658 GYVNCGFHNSAMEALQVLSMR 678
                G    A +    ++M+
Sbjct: 335 SLCKYGKIKEARDVFDTMAMK 355


>gi|224145829|ref|XP_002325779.1| predicted protein [Populus trichocarpa]
 gi|222862654|gb|EEF00161.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score = 79.7 bits (195), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 76/350 (21%), Positives = 140/350 (40%), Gaps = 22/350 (6%)

Query: 307 QNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTI 366
           Q+  L   ++ ++  LGLQP+  T+   I  +         +E+   M     +P   T 
Sbjct: 140 QHVDLGFSVLAKVIKLGLQPTIITFTTLINGLCKAGEFAQALELFDDMVARGCQPDVYTY 199

Query: 367 ATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPE---RAIKIFAKMRQ 423
            T+     K  E   A  L+ ++           +    D++ K      A+ IF+ M+ 
Sbjct: 200 TTIINGLCKMGETAAAAGLIKKMGEVGCQPDVVTYSTLIDSLCKDRLVNEALDIFSYMKA 259

Query: 424 K-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKN 482
           K + P + +Y  L     + +   E   M +++ S              NI    ++   
Sbjct: 260 KGISPTVVSYTSLIQGLCSFSRWKEASAMLNEMTSL-------------NIMPDIVTFSL 306

Query: 483 LLKALGAEGMIRELIQYFCDSKTPLGTP----TYNTVLHSLVEAQESHRAMEIFKQMKTC 538
           L+     EG + E  Q    + T +G      TYN+++H      E   A ++F  M T 
Sbjct: 307 LIDIFCKEGNVLE-AQGVLKTMTEMGVEPNVITYNSLMHGYSLQMEVVEARKLFDVMITR 365

Query: 539 GIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEA 598
           G  P+  +Y+I+I+   +++    A  L + M+  G  P T++YT LI      G   EA
Sbjct: 366 GCKPDVFSYSILINGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYTTLIHAFCQLGKLREA 425

Query: 599 LNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
             L   +   G   D+  Y+ +L+  C++G +     +   M    ++P+
Sbjct: 426 RELFKDMHTNGYLPDLCTYSVLLEGFCKQGYLGKAFRLFRAMQGTYLKPN 475



 Score = 79.3 bits (194), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 80/415 (19%), Positives = 165/415 (39%), Gaps = 73/415 (17%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           ++++ +I+   +   +  A  L+ +M  +G QP   TY   I ++  DR +   +++   
Sbjct: 197 YTYTTIINGLCKMGETAAAAGLIKKMGEVGCQPDVVTYSTLIDSLCKDRLVNEALDIFSY 256

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPER 413
           M+   + P   T+ + +             +L+  +   +  K  SA L    +++    
Sbjct: 257 MKAKGISP---TVVSYT-------------SLIQGLCSFSRWKEASAMLNEMTSLN---- 296

Query: 414 AIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMD---MAR 470
                      + PDI T+ LL  +F       +EGN+       K +  + ++   +  
Sbjct: 297 -----------IMPDIVTFSLLIDIF------CKEGNVLEAQGVLKTMTEMGVEPNVITY 339

Query: 471 NNIQHSH------ISMKNLLKALGAEGMIRELIQY------FCDSK-------------- 504
           N++ H +      +  + L   +   G   ++  Y      +C  K              
Sbjct: 340 NSLMHGYSLQMEVVEARKLFDVMITRGCKPDVFSYSILINGYCMVKRIDEAKQLFNEMIH 399

Query: 505 ---TPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFK 561
              TP  T +Y T++H+  +  +   A E+FK M T G  P+  TY+++++         
Sbjct: 400 QGLTP-NTVSYTTLIHAFCQLGKLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQGYLG 458

Query: 562 SASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTIL 621
            A  L   M      P  + YT LI  +   G+ + A  L   + + G+  DV +Y TI+
Sbjct: 459 KAFRLFRAMQGTYLKPNLVMYTILIDSMCKSGNLNHARKLFSELFVHGLQPDVQIYTTII 518

Query: 622 KKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
              C++G +D       +M ++   P+  + + +  G++    H     A+Q++ 
Sbjct: 519 NGLCKEGLLDEALEAFRKMEEDGCPPNEFSYNVIIRGFLQ---HKDESRAVQLIG 570



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 76/141 (53%), Gaps = 1/141 (0%)

Query: 512 YNTVLHSLVEAQESHRA-MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           +N +L ++V  ++ + A + + KQM+  G+ PN  T NI+I+C  +++      ++++ +
Sbjct: 93  FNKLLSAIVRMRQYYDAVISLSKQMELAGLSPNTCTLNILINCFCLMQHVDLGFSVLAKV 152

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           ++ G  P  +T+T LI  L   G+F +AL L D +   G   DV  Y TI+   C+ G  
Sbjct: 153 IKLGLQPTIITFTTLINGLCKAGEFAQALELFDDMVARGCQPDVYTYTTIINGLCKMGET 212

Query: 631 DVIEFIIEQMHQNKVQPDPST 651
                +I++M +   QPD  T
Sbjct: 213 AAAAGLIKKMGEVGCQPDVVT 233



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 79/365 (21%), Positives = 141/365 (38%), Gaps = 20/365 (5%)

Query: 318 QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKAL 377
           QM+  GL P++ T +  I      + +  G  VL  + +  L+P   T  TL     KA 
Sbjct: 116 QMELAGLSPNTCTLNILINCFCLMQHVDLGFSVLAKVIKLGLQPTIITFTTLINGLCKAG 175

Query: 378 ELDLAEALLDQ-ISRCTNPK--PFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYE 433
           E   A  L D  ++R   P    ++  +     M +   A  +  KM +   +PD+ TY 
Sbjct: 176 EFAQALELFDDMVARGCQPDVYTYTTIINGLCKMGETAAAAGLIKKMGEVGCQPDVVTYS 235

Query: 434 LLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMI 493
            L           E  ++FS              M    I  + +S  +L++ L +    
Sbjct: 236 TLIDSLCKDRLVNEALDIFSY-------------MKAKGISPTVVSYTSLIQGLCSFSRW 282

Query: 494 RELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIM 550
           +E      +  +    P   T++ ++    +      A  + K M   G+ PN  TYN +
Sbjct: 283 KEASAMLNEMTSLNIMPDIVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPNVITYNSL 342

Query: 551 IDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGI 610
           +   S+      A  L  +M+  G  P   +Y+ LI         DEA  L + +  +G+
Sbjct: 343 MHGYSLQMEVVEARKLFDVMITRGCKPDVFSYSILINGYCMVKRIDEAKQLFNEMIHQGL 402

Query: 611 PHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAME 670
             + + Y T++   C+ G++     + + MH N   PD  T   +  G+   G+   A  
Sbjct: 403 TPNTVSYTTLIHAFCQLGKLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQGYLGKAFR 462

Query: 671 ALQVL 675
             + +
Sbjct: 463 LFRAM 467


>gi|297745840|emb|CBI15896.3| unnamed protein product [Vitis vinifera]
          Length = 650

 Score = 79.7 bits (195), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 80/164 (48%), Gaps = 1/164 (0%)

Query: 508 GTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALV 567
           G  +YN++L++L+E+ +   A   F   +T G+ PN  TYNI+I      + F  A  L+
Sbjct: 113 GIRSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAKELL 172

Query: 568 SMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEK 627
           + M   GF P   +Y  LI  L   G   +AL L D +   G+  DV  YN ++    +K
Sbjct: 173 NWMWEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKK 232

Query: 628 GRIDVIEFIIEQMHQN-KVQPDPSTCHFVFSGYVNCGFHNSAME 670
           G I     I E++ +   V P+  + + + +G   CG  + + E
Sbjct: 233 GDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFE 276



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 79/400 (19%), Positives = 162/400 (40%), Gaps = 74/400 (18%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           S++ +++A   +     AE   L  +++GL P+  TY+  I+     +      E+L  M
Sbjct: 116 SYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWM 175

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERA 414
            +    P   +  TL    +K   +  A  L D++                     PER 
Sbjct: 176 WEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEM---------------------PERG 214

Query: 415 IKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQ 474
           +           PD+  Y +L   F      +++G++ +  +  +R+  ++      NI 
Sbjct: 215 VT----------PDVACYNILIDGF------FKKGDILNASEIWERL--LKGPSVYPNIP 256

Query: 475 HSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQ 534
             ++ +  L K  G      E+      ++      TY+T++H L  +     A  ++K+
Sbjct: 257 SYNVMINGLCKC-GKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKE 315

Query: 535 MKTCGIPPNAATYNIMI----------DCCSIIRCF--KSASALVS--MMVRDGF----- 575
           M   G+ P+   YN M+          +C  + +    +    +VS  +++R  F     
Sbjct: 316 MAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRTVVSYNILIRGLFENAKV 375

Query: 576 ---------YPQ------TMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTI 620
                     P+      +MTY  L+  L   G  ++AL++L+         D   Y+++
Sbjct: 376 DEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSM 435

Query: 621 LKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYV 660
           +   C +GR+D +  +++QM ++  +P+P  C+ V +G+V
Sbjct: 436 INGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFV 475



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 127/597 (21%), Positives = 231/597 (38%), Gaps = 55/597 (9%)

Query: 90  FFHILNYCARSPDPLFVMETWRMME---EKEIGLNNKCYLLMMQALCKGGYLEEASNLIY 146
           F HIL    R  DP  V    R++E    ++        L +++A  K    ++A ++  
Sbjct: 46  FHHILK---RLFDPKLVAHVSRIVELIRTQKCKCPEDVALTVIKAYAKNSMPDQALDIFQ 102

Query: 147 FLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQ 206
            + E +G  P +  YNS L A  + +    A       ++  +  N  TY  L+K++  +
Sbjct: 103 RMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRK 162

Query: 207 KNLSAVHEI----WEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKL 262
           K      E+    WE   + +S  +FS    + S  +   +  A +    M    +   +
Sbjct: 163 KQFDKAKELLNWMWE---QGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDV 219

Query: 263 YI-NRTSEGRLRSSRLDIPIPLNALPVMKVLRW---------SFSDVIHA---CGRTQNS 309
              N   +G  +   +     LNA  + + L           S++ +I+    CG+   S
Sbjct: 220 ACYNILIDGFFKKGDI-----LNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDES 274

Query: 310 GLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL 369
               ++  +M+        +TY   I  +     L     V K M +N + P      T+
Sbjct: 275 ---FEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTM 331

Query: 370 SVECSKALELDLAEALLDQISR--CTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LR 426
                +A  ++    L   + +  C     ++  +       K + AI I+  + +K   
Sbjct: 332 LNGYLRAGRIEECLELWKVMEKEGCRTVVSYNILIRGLFENAKVDEAISIWELLPEKDCC 391

Query: 427 PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKA 486
            D  TY +L      V+   + G +   +   +     E +  R ++     +  +++  
Sbjct: 392 ADSMTYGVL------VHGLCKNGYLNKALSILE-----EAENGRGDLDT--FAYSSMING 438

Query: 487 LGAEGMIRELIQYFCDSKTPLGTP----TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPP 542
           L  EG + E+     D  T  G        N V++  V A +   A+  F  M + G  P
Sbjct: 439 LCREGRLDEVAGVL-DQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFP 497

Query: 543 NAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL 602
              TYN +I+  S    F  A ALV  M+  G+ P  +TY+ L+  L      D ALNL 
Sbjct: 498 TVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDMALNLW 557

Query: 603 DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
                +G   DV ++N I+   C  G+++    +  +M Q K  P+  T + +  G+
Sbjct: 558 CQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRKCVPNLVTHNTLMEGF 614



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 62/268 (23%), Positives = 122/268 (45%), Gaps = 13/268 (4%)

Query: 411 PERAIKIFAKMRQ--KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
           P++A+ IF +M +    +P IR+Y  L +     N   E  + F   ++        M +
Sbjct: 94  PDQALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFET--------MGL 145

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRA 528
           + N +Q  +I +K   +    +   +EL+ +  +        +Y T+++SL +      A
Sbjct: 146 SPN-LQTYNILIKISCRKKQFD-KAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDA 203

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRD-GFYPQTMTYTALIK 587
           +++F +M   G+ P+ A YNI+ID         +AS +   +++    YP   +Y  +I 
Sbjct: 204 LKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMIN 263

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
            L   G FDE+  +   +       D+  Y+T++   C  G +D    + ++M +N V P
Sbjct: 264 GLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSP 323

Query: 648 DPSTCHFVFSGYVNCGFHNSAMEALQVL 675
           D    + + +GY+  G     +E  +V+
Sbjct: 324 DVVVYNTMLNGYLRAGRIEECLELWKVM 351



 Score = 48.5 bits (114), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 93/533 (17%), Positives = 192/533 (36%), Gaps = 57/533 (10%)

Query: 43  TMGLNEESISKATQMQIVDALCRGER-SRASHLLLNLGHAHHSLGADDFFHILNYCARSP 101
           TMGL   S +  T   ++   CR ++  +A  LL  +     S     +  ++N  A++ 
Sbjct: 142 TMGL---SPNLQTYNILIKISCRKKQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAKNG 198

Query: 102 DPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVY 161
                ++ +  M E+ +  +  CY +++    K G +  AS +   L +   +YP +P Y
Sbjct: 199 YMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSY 258

Query: 162 NSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK 221
           N  +    K      +      M     G++  TY+ L+       NL     ++++  +
Sbjct: 259 NVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAE 318

Query: 222 H-YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIP 280
           +  S  +      +  + R   ++   E  + M        +  N    G   ++++D  
Sbjct: 319 NGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRTVVSYNILIRGLFENAKVDEA 378

Query: 281 IPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVS 340
           I +          W        C                        S TY   +  +  
Sbjct: 379 ISI----------WELLPEKDCCA----------------------DSMTYGVLVHGLCK 406

Query: 341 DRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR--CT-NPKP 397
           +  L   + +L+  +           +++     +   LD    +LDQ+++  C  NP  
Sbjct: 407 NGYLNKALSILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHV 466

Query: 398 FSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVD 456
            +A +       K E A++ F  M  K   P + TY  L              N  S+ +
Sbjct: 467 CNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLI-------------NGLSKAE 513

Query: 457 SAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPT---YN 513
                 A+  +M     + + I+   L+  L     +   +  +C +      P    +N
Sbjct: 514 RFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHN 573

Query: 514 TVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASAL 566
            ++H L  + +   A++++ +MK     PN  T+N +++    +R F+ AS +
Sbjct: 574 IIIHGLCSSGKVEDALQLYSEMKQRKCVPNLVTHNTLMEGFYKVRDFERASKI 626



 Score = 38.9 bits (89), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 22/112 (19%), Positives = 51/112 (45%)

Query: 574 GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVI 633
           G  P   +Y +L+  L++   +DEA +        G+  ++  YN ++K +C K + D  
Sbjct: 109 GCQPGIRSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKA 168

Query: 634 EFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVS 685
           + ++  M +    PD  +   + +     G+ + A++    +  R +  +V+
Sbjct: 169 KELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVA 220


>gi|255586858|ref|XP_002534039.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223525946|gb|EEF28343.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 634

 Score = 79.7 bits (195), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 86/405 (21%), Positives = 163/405 (40%), Gaps = 36/405 (8%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +F ++IH   +        QL  +MQ  GL P    YD  I    S++ L   + +   M
Sbjct: 81  TFCNLIHGFVKQSRVDKGVQLFYKMQKYGLSPDISLYDVLIGGFCSNKKLDKALSLYAEM 140

Query: 355 QQNNLKPQDSTIATLSVECSKALEL-DLAEALLDQISRCTNPKPFSAFLA---------- 403
           +   ++P    ++ L     +  +L D+ E  L+ ++  T     ++ L+          
Sbjct: 141 KMLKIQPDIGVVSKLISSFPEEGKLIDILEETLEDMNIETQTLLCNSVLSSLVNSGLIDK 200

Query: 404 ACDTM-------DKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVD 456
           AC  +       D  +   K+F    +K+RP+  ++ ++              N   Q  
Sbjct: 201 ACCLLRNMMGNGDDDDVQYKLFRD--EKIRPNTASFSIVI-------------NGLMQAC 245

Query: 457 SAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYN 513
                  +  DMA        +   NL+  L     + E   L++   +S       T N
Sbjct: 246 KLDLAVCLFQDMAEIGCNRDLLLYNNLINGLCNSDRLEESYKLLKEMEESGFKPTQFTLN 305

Query: 514 TVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRD 573
           ++   L + Q+   A+++ K+M+  G  P    Y +++           AS  ++ MV++
Sbjct: 306 SIFGCLCKRQDVSGALDLVKKMRLYGCEPWVKHYTLLVRKLCKHGKAAEASIFLTDMVQE 365

Query: 574 GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVI 633
           GF P  + Y+AL+  L++  + D+AL L   +S  G   DV+ YN ++K   E  R +  
Sbjct: 366 GFPPNIIAYSALLGGLIEVQEVDQALKLFKDISARGRCPDVIAYNILMKGLYEAHRTEEA 425

Query: 634 EFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678
             +  +M    + P   T + +  G+   G  + AM  L  +S +
Sbjct: 426 RNLFNEMVMKGLIPSVVTYNLLIDGWCKNGCIDDAMNCLCSMSAK 470



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 81/364 (22%), Positives = 129/364 (35%), Gaps = 66/364 (18%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           SFS VI+   +     LA  L   M  +G       Y+  I  + +   L    ++LK M
Sbjct: 233 SFSIVINGLMQACKLDLAVCLFQDMAEIGCNRDLLLYNNLINGLCNSDRLEESYKLLKEM 292

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERA 414
           +++  KP   T+ ++                               F   C   D    A
Sbjct: 293 EESGFKPTQFTLNSI-------------------------------FGCLCKRQD-VSGA 320

Query: 415 IKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNI 473
           + +  KMR     P ++ Y LL      V    + G        A   +    DM +   
Sbjct: 321 LDLVKKMRLYGCEPWVKHYTLL------VRKLCKHG-------KAAEASIFLTDMVQEGF 367

Query: 474 QHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAME 530
             + I+   LL  L     + + ++ F D       P    YN ++  L EA  +  A  
Sbjct: 368 PPNIIAYSALLGGLIEVQEVDQALKLFKDISARGRCPDVIAYNILMKGLYEAHRTEEARN 427

Query: 531 IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590
           +F +M   G+ P+  TYN++ID      C   A   +  M      P   TYT LI  L 
Sbjct: 428 LFNEMVMKGLIPSVVTYNLLIDGWCKNGCIDDAMNCLCSMSAKEREPNVFTYTTLIDGLC 487

Query: 591 DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650
             G  D+A               V+L+N + ++ C   R+  + FI      +K  P+ +
Sbjct: 488 KAGRPDDA---------------VMLWNEMRRRGCRPNRVAFMGFIHGLCKCDK--PEAA 530

Query: 651 TCHF 654
             HF
Sbjct: 531 LIHF 534


>gi|356574876|ref|XP_003555569.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08610-like [Glycine max]
          Length = 589

 Score = 79.7 bits (195), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 103/218 (47%), Gaps = 15/218 (6%)

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQE 524
           MAR +      S  NL++    +G++ E  +         G P   TYN V+  L +   
Sbjct: 156 MARKSQIPHFPSCTNLIRGFIRKGLVDEACKTLNKMVMSGGVPDTITYNMVIGGLCKNGR 215

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRC------FKSASALVSMMVRDGFYPQ 578
              A+++ + M   G  P+A TYN      SIIRC      F  A       +R G  P 
Sbjct: 216 LRSALDLVEDMSLSGCSPDAITYN------SIIRCLFDKGNFNQAVNFWRDQLRKGCPPY 269

Query: 579 TMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIE 638
            +TYT LI+++  Y     AL +L+ +++EG   D++ YN+++    ++G+ +    +I 
Sbjct: 270 LITYTVLIELVCKYCGAARALEVLEDMAMEGCYPDIVTYNSLVNLTSKQGKYEDTALVIL 329

Query: 639 QMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
            +  + +QP+  T + +    +N G+ +   + L++++
Sbjct: 330 NLLSHGMQPNAVTYNTLIHSLINHGYWDEVDDILKIMN 367



 Score = 72.8 bits (177), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 54/252 (21%), Positives = 112/252 (44%), Gaps = 16/252 (6%)

Query: 427 PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKA 486
           PD  TY ++      +    + G + S +D  +       DM+ +      I+  ++++ 
Sbjct: 198 PDTITYNMV------IGGLCKNGRLRSALDLVE-------DMSLSGCSPDAITYNSIIRC 244

Query: 487 LGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPN 543
           L  +G   + + ++ D       P   TY  ++  + +   + RA+E+ + M   G  P+
Sbjct: 245 LFDKGNFNQAVNFWRDQLRKGCPPYLITYTVLIELVCKYCGAARALEVLEDMAMEGCYPD 304

Query: 544 AATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLD 603
             TYN +++  S    ++  + ++  ++  G  P  +TY  LI  L+++G +DE  ++L 
Sbjct: 305 IVTYNSLVNLTSKQGKYEDTALVILNLLSHGMQPNAVTYNTLIHSLINHGYWDEVDDILK 364

Query: 604 LVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
           +++    P   + YN +L   C+ G +D        M      PD  T + + SG    G
Sbjct: 365 IMNETSSPPTHVTYNILLNGLCKSGLLDRAISFYSTMVTENCSPDIITYNTLLSGLCKEG 424

Query: 664 FHNSAMEALQVL 675
           F +  ++ L +L
Sbjct: 425 FIDEGIQLLNLL 436



 Score = 65.9 bits (159), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 74/168 (44%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TYNT++HSL+         +I K M     PP   TYNI+++          A +  S M
Sbjct: 342 TYNTLIHSLINHGYWDEVDDILKIMNETSSPPTHVTYNILLNGLCKSGLLDRAISFYSTM 401

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           V +   P  +TY  L+  L   G  DE + LL+L+        ++ YN ++      G +
Sbjct: 402 VTENCSPDIITYNTLLSGLCKEGFIDEGIQLLNLLVGTSCSPGLVTYNIVIDGLARLGSM 461

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678
           +  + + ++M    + PD  T   +  G+        A E L+ +SM+
Sbjct: 462 ESAKELYDEMVDKGIIPDEITHSSLTWGFCRADQLEEATELLKEMSMK 509



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 76/371 (20%), Positives = 138/371 (37%), Gaps = 20/371 (5%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL-S 370
           A  L+  M   G  P + TY+  IR +         +   +   +    P   T   L  
Sbjct: 219 ALDLVEDMSLSGCSPDAITYNSIIRCLFDKGNFNQAVNFWRDQLRKGCPPYLITYTVLIE 278

Query: 371 VECSKALELDLAEALLDQISRCTNPK--PFSAFLAACDTMDKPE-RAIKIFAKMRQKLRP 427
           + C         E L D       P    +++ +       K E  A+ I   +   ++P
Sbjct: 279 LVCKYCGAARALEVLEDMAMEGCYPDIVTYNSLVNLTSKQGKYEDTALVILNLLSHGMQP 338

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL 487
           +  TY  L      +N  Y     + +VD   +I      M   +   +H++   LL  L
Sbjct: 339 NAVTYNTLIHSL--INHGY-----WDEVDDILKI------MNETSSPPTHVTYNILLNGL 385

Query: 488 GAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNA 544
              G++   I ++    T   +P   TYNT+L  L +       +++   +      P  
Sbjct: 386 CKSGLLDRAISFYSTMVTENCSPDIITYNTLLSGLCKEGFIDEGIQLLNLLVGTSCSPGL 445

Query: 545 ATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDL 604
            TYNI+ID  + +   +SA  L   MV  G  P  +T+++L          +EA  LL  
Sbjct: 446 VTYNIVIDGLARLGSMESAKELYDEMVDKGIIPDEITHSSLTWGFCRADQLEEATELLKE 505

Query: 605 VSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGF 664
           +S++        Y  ++   C + ++D+   +++ M + +  PD      +     + G 
Sbjct: 506 MSMKEQRIKNTAYRCVILGLCRQKKVDIAIQVLDLMVKGQCNPDERIYSALIKAVADGGM 565

Query: 665 HNSAMEALQVL 675
              A +  Q L
Sbjct: 566 LKEANDLHQTL 576



 Score = 45.1 bits (105), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 49/107 (45%)

Query: 563 ASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILK 622
           A+ L+ +M R    P   + T LI+  +  G  DEA   L+ + + G   D + YN ++ 
Sbjct: 149 AARLIDVMARKSQIPHFPSCTNLIRGFIRKGLVDEACKTLNKMVMSGGVPDTITYNMVIG 208

Query: 623 KACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAM 669
             C+ GR+     ++E M  +   PD  T + +     + G  N A+
Sbjct: 209 GLCKNGRLRSALDLVEDMSLSGCSPDAITYNSIIRCLFDKGNFNQAV 255


>gi|357121285|ref|XP_003562351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 624

 Score = 79.7 bits (195), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 88/388 (22%), Positives = 158/388 (40%), Gaps = 51/388 (13%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           ++ +I    +  +  +A +++ +M S GL+P+   Y+  ++ I S        E+L  M 
Sbjct: 269 YATIIDGICKEGHHEVANEILSRMPSYGLKPNVVCYNTVLKGICSADRWEKAEELLTEMY 328

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAI 415
           Q N    D T   L       ++      L+D                         R I
Sbjct: 329 QKNCPLDDVTFNIL-------VDFFCQNGLVD-------------------------RVI 356

Query: 416 KIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQ 474
           ++  +M      PD+ TY  + + F       +EG +   V   K  N        N I 
Sbjct: 357 ELLEQMLEHGCMPDVITYTTVINGF------CKEGLIDEAVMLLK--NMPSCGCKPNTIS 408

Query: 475 HSHISMKNLLKA---LGAEGMIRELIQYFCDSKTPLGTP-TYNTVLHSLVEAQESHRAME 530
           ++ I +K L      + AE ++  +IQ  C     L  P T+NT+++ L +     +A+E
Sbjct: 409 YT-IVLKGLCSTERWVDAEELMSRMIQQGC-----LPNPVTFNTIINFLCKKGLVEQAIE 462

Query: 531 IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590
           + KQM   G  P+  +Y+ +ID        + A  L+++M+  G  P  +TY+++   L 
Sbjct: 463 LLKQMLVNGCNPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPNVITYSSMAFALA 522

Query: 591 DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650
             G  D+ + + D +    I  D +LYN ++   C++   D+    +  M  N   P+ S
Sbjct: 523 REGRIDKVIQMFDNIQDATIRSDAVLYNAVISSLCKRRETDLAIDFLAYMVSNGCMPNES 582

Query: 651 TCHFVFSGYVNCGFHNSAMEALQVLSMR 678
           T   +  G  + G    A + L  L  R
Sbjct: 583 TYTALIKGLASEGLLCEAQDLLSELCSR 610



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 67/287 (23%), Positives = 122/287 (42%), Gaps = 25/287 (8%)

Query: 408 MDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM 466
           MD+  +  +  ++M Q    PDIR Y  +      ++   +EG+        +  N I  
Sbjct: 244 MDEMVKVHEALSQMAQHGCTPDIRMYATI------IDGICKEGHH-------EVANEILS 290

Query: 467 DMARNNIQHSHISMKNLLKAL-------GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSL 519
            M    ++ + +    +LK +        AE ++ E+ Q  C    PL   T+N ++   
Sbjct: 291 RMPSYGLKPNVVCYNTVLKGICSADRWEKAEELLTEMYQKNC----PLDDVTFNILVDFF 346

Query: 520 VEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQT 579
            +     R +E+ +QM   G  P+  TY  +I+          A  L+  M   G  P T
Sbjct: 347 CQNGLVDRVIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKNMPSCGCKPNT 406

Query: 580 MTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQ 639
           ++YT ++K L     + +A  L+  +  +G   + + +NTI+   C+KG ++    +++Q
Sbjct: 407 ISYTIVLKGLCSTERWVDAEELMSRMIQQGCLPNPVTFNTIINFLCKKGLVEQAIELLKQ 466

Query: 640 MHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           M  N   PD  +   V  G    G    A+E L V+  + +   V T
Sbjct: 467 MLVNGCNPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPNVIT 513


>gi|297736854|emb|CBI26055.3| unnamed protein product [Vitis vinifera]
          Length = 653

 Score = 79.7 bits (195), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 84/358 (23%), Positives = 141/358 (39%), Gaps = 31/358 (8%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +FS +I   G+      A  L  +M   G  P +  Y   IR+        +G ++ K M
Sbjct: 231 TFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEM 290

Query: 355 QQNNLKPQDSTIATLSVECS-KALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDK 410
                 P D T+    ++C  KA E +   AL  +I+      + + +S  +        
Sbjct: 291 VHTGCSP-DLTLINTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSILIHGLVKAGL 349

Query: 411 PERAIKIFAKMR-QKLRPDIRTYELLFSLF---GNVNAPYE----------------EGN 450
                ++F  M+ Q    D   Y  +   F   G VN  Y+                 G+
Sbjct: 350 ANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGS 409

Query: 451 MFSQVDSAKRINAIEM---DMARNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSK 504
           +   +    R++   M   +   N I+ + +   +L+   G  G I E   +++      
Sbjct: 410 VIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKG 469

Query: 505 TPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSAS 564
                 T+N +L +LV+A+E + A+  F+ MK    PPN  TY+I+I+    +R F  A 
Sbjct: 470 LTPNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSILINGLCRVRKFNKAF 529

Query: 565 ALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILK 622
                M + G  P T+TYT +I  L   G+  EA  L       G   D   YN +++
Sbjct: 530 VFWQEMQKLGLKPNTITYTTMISGLAKAGNILEASGLFSRFKANGGIPDSASYNAMIE 587



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 73/336 (21%), Positives = 139/336 (41%), Gaps = 31/336 (9%)

Query: 344 LRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLD-QISRCTNPK--PFSA 400
           L   +E+ + ++QN   P      T+ +    A + D A  LL+ Q ++ + P    ++ 
Sbjct: 71  LDEAVELFEQLEQNRKVPCAYAYNTMIMGYGSAGKFDEAYGLLERQKAKGSIPSVIAYNC 130

Query: 401 FLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLF---GNVNAPYE------EGNM 451
            L       + E A++IF +M++   P++ TY +L  +    G +NA  E         +
Sbjct: 131 ILTCLGKKRRVEEALRIFEEMKRDAVPNVPTYNILIDMLCREGKLNAALEIRDDMERAGL 190

Query: 452 FSQVDS----------AKRIN---AIEMDMARNNIQHSHISMKNLLKALGAEGMIRE--- 495
           F  V +          A+++    +I   M       + ++  +L+  LG  G + +   
Sbjct: 191 FPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYS 250

Query: 496 LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCS 555
           L +   D     G   Y +++ S  +        +I+K+M   G  P+    N  +DC  
Sbjct: 251 LYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINTYMDCVF 310

Query: 556 IIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVL 615
                +   AL   +   GF P   +Y+ LI  L+  G  +E   L   +  +G   D  
Sbjct: 311 KAGETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTH 370

Query: 616 LYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
            YN ++   C+ G+++    ++E+M   KV+  P T
Sbjct: 371 AYNAVIDGFCKSGKVNKAYQLLEEM---KVKGHPPT 403



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 79/164 (48%), Gaps = 2/164 (1%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC-CSIIRCFKSASALVSM 569
           +Y+ ++H LV+A  ++   E+F  MK  G   +   YN +ID  C   +  K+   L  M
Sbjct: 336 SYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEM 395

Query: 570 MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
            V+ G  P  +TY ++I  L      DEA  L +     GI  +V++Y++++    + GR
Sbjct: 396 KVK-GHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGR 454

Query: 630 IDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           ID    I+E++ Q  + P+  T + +    V     N A+   Q
Sbjct: 455 IDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQ 498



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 106/522 (20%), Positives = 196/522 (37%), Gaps = 71/522 (13%)

Query: 106 VMETWRMMEE--KEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNS 163
           V E  R+ EE  ++   N   Y +++  LC+ G L  A  +   + ER G++P +   N 
Sbjct: 141 VEEALRIFEEMKRDAVPNVPTYNILIDMLCREGKLNAALEIRDDM-ERAGLFPNVLTVNI 199

Query: 164 FLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK-- 221
            +    K   +  A    + MD ++   N VT++ L+        +   + ++E  +   
Sbjct: 200 MIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCG 259

Query: 222 HYSLSIF--SLRKFVWSFTRLRDLKSAYETLQH--------MVALAMMGKLYINRTSEGR 271
           H   +I   SL +  +   R  D    Y+ + H        ++   M        T +GR
Sbjct: 260 HVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKGR 319

Query: 272 LRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTY 331
                +      NA   +   R S+S +IH   +   +    +L   M+  G    +H Y
Sbjct: 320 ALFREI------NAHGFIPDAR-SYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAY 372

Query: 332 DGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR 391
           +  I        +    ++L+ M+     P   T  ++    +K   LD A  L ++   
Sbjct: 373 NAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKS 432

Query: 392 CT---NPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYE 447
                N   +S+ +     + + + A  I  ++ QK L P++ T+  L            
Sbjct: 433 NGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDAL-------- 484

Query: 448 EGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPL 507
                        + A E++ A    Q    SMK+L                    K P 
Sbjct: 485 -------------VKAEEINEALICFQ----SMKDL--------------------KCPP 507

Query: 508 GTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALV 567
              TY+ +++ L   ++ ++A   +++M+  G+ PN  TY  MI   +       AS L 
Sbjct: 508 NQITYSILINGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNILEASGLF 567

Query: 568 SMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEG 609
           S    +G  P + +Y A+I+ L       +A  L +   L+G
Sbjct: 568 SRFKANGGIPDSASYNAMIEGLSSANKAMDAYALFEETRLKG 609



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 68/344 (19%), Positives = 134/344 (38%), Gaps = 14/344 (4%)

Query: 319 MQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALE 378
           M+  GL P+  T +  I  +   + L     + + M      P   T ++L     K   
Sbjct: 185 MERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGR 244

Query: 379 LDLAEALLDQISRCTN-PKP--FSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYEL 434
           +D A +L +++  C + P    +++ + +     + E   KI+ +M      PD+     
Sbjct: 245 VDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINT 304

Query: 435 LFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIR 494
                       +   +F ++++   I          + +   I +  L+KA G      
Sbjct: 305 YMDCVFKAGETEKGRALFREINAHGFIP---------DARSYSILIHGLVKA-GLANETY 354

Query: 495 ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCC 554
           EL     +    L T  YN V+    ++ + ++A ++ ++MK  G PP   TY  +ID  
Sbjct: 355 ELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGL 414

Query: 555 SIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDV 614
           + I     A  L      +G     + Y++LI      G  DEA  +++ +  +G+  +V
Sbjct: 415 AKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNV 474

Query: 615 LLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
             +N +L    +   I+      + M   K  P+  T   + +G
Sbjct: 475 YTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSILING 518


>gi|115475535|ref|NP_001061364.1| Os08g0248400 [Oryza sativa Japonica Group]
 gi|113623333|dbj|BAF23278.1| Os08g0248400, partial [Oryza sativa Japonica Group]
          Length = 440

 Score = 79.7 bits (195), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 86/165 (52%), Gaps = 4/165 (2%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID-CCSIIRCFKSASALVSM 569
           TYN+++H    + +S  A+ I ++M + G+ P+A TY  ++D  C   RC ++   L SM
Sbjct: 278 TYNSIVHGYCSSGQSKEAIGILEKMCSDGVEPDAVTYTSLMDYLCKNGRCIEARKILDSM 337

Query: 570 MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
           + R G  P  +TY+ L+      G   E  +LLDL+   GI  D  ++ +IL  AC K +
Sbjct: 338 IKR-GLKPNVITYSTLLHGYATKGALVEMRDLLDLMVRNGIQPDRHVF-SILICACTKHQ 395

Query: 630 -IDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
            +DV  F+  +M Q ++ PD  T   +  G    G  + AM  L+
Sbjct: 396 NVDVAMFVFSKMRQQRLTPDVVTYGTLIDGLCKSGRVDDAMLNLE 440



 Score = 76.3 bits (186), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 85/167 (50%), Gaps = 5/167 (2%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TYNT++ +L +AQ   +AM++  +M   G+ P+  TYN ++         K A  ++  M
Sbjct: 243 TYNTIVAALCKAQAMDKAMDVLNRMVKNGVMPDCITYNSIVHGYCSSGQSKEAIGILEKM 302

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
             DG  P  +TYT+L+  L   G   EA  +LD +   G+  +V+ Y+T+L     KG +
Sbjct: 303 CSDGVEPDAVTYTSLMDYLCKNGRCIEARKILDSMIKRGLKPNVITYSTLLHGYATKGAL 362

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYV-NCGFHNSAMEALQVLS 676
             +  +++ M +N +QPD      VFS  +  C  H +   A+ V S
Sbjct: 363 VEMRDLLDLMVRNGIQPD----RHVFSILICACTKHQNVDVAMFVFS 405



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 81/171 (47%), Gaps = 2/171 (1%)

Query: 495 ELIQYFCD--SKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID 552
           EL+    D     P    +Y+T++  L +  +S +A   + +M   GI P+  TYN ++ 
Sbjct: 190 ELLHMMADDGGDCPPDVVSYSTIIDGLFKEGDSDKAYSTYHEMLERGILPDVVTYNTIVA 249

Query: 553 CCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPH 612
                +    A  +++ MV++G  P  +TY +++      G   EA+ +L+ +  +G+  
Sbjct: 250 ALCKAQAMDKAMDVLNRMVKNGVMPDCITYNSIVHGYCSSGQSKEAIGILEKMCSDGVEP 309

Query: 613 DVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
           D + Y +++   C+ GR      I++ M +  ++P+  T   +  GY   G
Sbjct: 310 DAVTYTSLMDYLCKNGRCIEARKILDSMIKRGLKPNVITYSTLLHGYATKG 360



 Score = 65.1 bits (157), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 79/165 (47%), Gaps = 3/165 (1%)

Query: 512 YNTVLHSLVEAQESHRAMEI-FKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           +  +L SL   + +  AM I  ++M   G  P+  +YNI++         + A  L+ MM
Sbjct: 136 FTPLLKSLCAEKRTSNAMNIVLRRMTELGCAPHVFSYNILLKGLCHESRSQEALELLHMM 195

Query: 571 VRDG--FYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
             DG    P  ++Y+ +I  L   GD D+A +    +   GI  DV+ YNTI+   C+  
Sbjct: 196 ADDGGDCPPDVVSYSTIIDGLFKEGDSDKAYSTYHEMLERGILPDVVTYNTIVAALCKAQ 255

Query: 629 RIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
            +D    ++ +M +N V PD  T + +  GY + G    A+  L+
Sbjct: 256 AMDKAMDVLNRMVKNGVMPDCITYNSIVHGYCSSGQSKEAIGILE 300



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 80/177 (45%), Gaps = 10/177 (5%)

Query: 483 LLKALGAEGMIRELIQYFCDSKTPLGTP----TYNTVLHSLVEAQESHRAMEIFKQMKTC 538
           LLK+L AE      +       T LG      +YN +L  L     S  A+E+   M   
Sbjct: 139 LLKSLCAEKRTSNAMNIVLRRMTELGCAPHVFSYNILLKGLCHESRSQEALELLHMMADD 198

Query: 539 G--IPPNAATYNIMIDCCSIIRCFKSASALVSM--MVRDGFYPQTMTYTALIKILLDYGD 594
           G   PP+  +Y+ +ID   + +   S  A  +   M+  G  P  +TY  ++  L     
Sbjct: 199 GGDCPPDVVSYSTIID--GLFKEGDSDKAYSTYHEMLERGILPDVVTYNTIVAALCKAQA 256

Query: 595 FDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
            D+A+++L+ +   G+  D + YN+I+   C  G+      I+E+M  + V+PD  T
Sbjct: 257 MDKAMDVLNRMVKNGVMPDCITYNSIVHGYCSSGQSKEAIGILEKMCSDGVEPDAVT 313



 Score = 48.9 bits (115), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 74/328 (22%), Positives = 137/328 (41%), Gaps = 21/328 (6%)

Query: 125 YLLMMQALCKGGYLEEA-SNLIYFLGERYGIYPIL--PVYNSFLGACAKLHSMVHANLCL 181
           Y +++   C+ G L+   + L   + + Y + PI+  P+  S    CA+  +    N+ L
Sbjct: 101 YGILIGCCCRAGRLDLGFAGLGNVIKKGYRVEPIIFTPLLKSL---CAEKRTSNAMNIVL 157

Query: 182 DLMDSRMVGKNEVTYTELLKL----AVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSF 237
             M       +  +Y  LLK     +  Q+ L  +H + +D        + S    +   
Sbjct: 158 RRMTELGCAPHVFSYNILLKGLCHESRSQEALELLHMMADDG-GDCPPDVVSYSTIIDGL 216

Query: 238 TRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRL-RSSRLDIPIP-LNALPVMKVLR-- 293
            +  D   AY T   M+   ++  +    T    L ++  +D  +  LN +    V+   
Sbjct: 217 FKEGDSDKAYSTYHEMLERGILPDVVTYNTIVAALCKAQAMDKAMDVLNRMVKNGVMPDC 276

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
            +++ ++H    +  S  A  ++ +M S G++P + TY   +  +  +       ++L  
Sbjct: 277 ITYNSIVHGYCSSGQSKEAIGILEKMCSDGVEPDAVTYTSLMDYLCKNGRCIEARKILDS 336

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMD 409
           M +  LKP   T +TL    +    L     LLD + R    +P    FS  + AC    
Sbjct: 337 MIKRGLKPNVITYSTLLHGYATKGALVEMRDLLDLMVR-NGIQPDRHVFSILICACTKHQ 395

Query: 410 KPERAIKIFAKMR-QKLRPDIRTYELLF 436
             + A+ +F+KMR Q+L PD+ TY  L 
Sbjct: 396 NVDVAMFVFSKMRQQRLTPDVVTYGTLI 423


>gi|224054827|ref|XP_002298371.1| predicted protein [Populus trichocarpa]
 gi|222845629|gb|EEE83176.1| predicted protein [Populus trichocarpa]
          Length = 915

 Score = 79.7 bits (195), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 118/558 (21%), Positives = 229/558 (41%), Gaps = 33/558 (5%)

Query: 128 MMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSR 187
           +++ L + G + +A +L+  + ++ G  P L VYN+ + +  K      A L    M  +
Sbjct: 337 LVEGLRRKGKVVDAFDLVNRV-KKVGAMPSLFVYNALINSLCKDGKFDEAELLFKEMGEK 395

Query: 188 MVGKNEVTYTELLKLAVWQKNL-SAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSA 246
            +  N+VTY+ L+     +  L +A+H + +  +    ++++     +    +L +L +A
Sbjct: 396 GLCANDVTYSILIDSFCRRGKLDTAIHFLGKMIMAGIKITVYPYNSLINGHCKLGNLSAA 455

Query: 247 YETLQHMVALAMMGKLYINRTS--EGRLRSSRLDIPIPLNALPVMKVL---RWSFSDVIH 301
                 M+   +   + ++ TS   G     +L     L      K +    ++F+ +I 
Sbjct: 456 VSFFDEMIDKGLKPTV-VSYTSLISGYCNKGKLHEAFRLYHEMTGKGIAPNTYTFTTLIS 514

Query: 302 ACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKP 361
           A  R      A +L  +M    + P+  TY+  I     +       E+L  M Q  L P
Sbjct: 515 ALFRANRMTDAFRLFDEMLEQNMMPNEVTYNVMIEGHCKEGNTVKAFELLNQMVQKGLVP 574

Query: 362 QDSTIATL-SVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKPERAIKI 417
              T   L S  CS     + A+  +D + R     N   +SA L       +   A+ +
Sbjct: 575 DTYTYRPLISSLCSTGRVCE-AKKFIDDLHREHFKLNEMCYSALLHGYCKEGRLRDALGV 633

Query: 418 FAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHS 476
             +M ++ +  D+  Y +L            +G +  Q  SA  +  +  +M    ++  
Sbjct: 634 CREMVKRGVDMDLVCYAVLI-----------DGTIKEQDTSA--VFGLLKNMHDQRLRPD 680

Query: 477 HISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFK 533
            +   +++      G +++   +     D        TY T+++ L +A    +A  ++K
Sbjct: 681 KVIYTSMIDGYSKAGSVKKAFGIWDIMIDEGCTPNIVTYTTLINELCKAGLMDKAELLWK 740

Query: 534 QMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYG 593
           +M      PN  TY   +D  +     + A  L + M++ G    T++Y  L++     G
Sbjct: 741 EMLVSNSTPNHVTYCCFLDHLAREGSMEKAVQLHNDMLK-GLLANTVSYNILVRGFCKLG 799

Query: 594 DFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID-VIEFIIEQMHQNKVQPDPSTC 652
             +EA  LLD +    I  D + Y+TI+ + C +G +D  IEF  + M    ++PD    
Sbjct: 800 RVEEATKLLDEMIDNAIFPDCITYSTIIYQCCRRGNLDGAIEF-WDTMLNKGLKPDTLAY 858

Query: 653 HFVFSGYVNCGFHNSAME 670
           +F+  G    G    A E
Sbjct: 859 NFLIYGCCIAGELGKAFE 876



 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 110/559 (19%), Positives = 218/559 (38%), Gaps = 72/559 (12%)

Query: 110 WRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGE------RYGIYPILPVYNS 163
           ++ M EK +  N+  Y +++ + C+ G L+ A   I+FLG+      +  +YP    YNS
Sbjct: 389 FKEMGEKGLCANDVTYSILIDSFCRRGKLDTA---IHFLGKMIMAGIKITVYP----YNS 441

Query: 164 FLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KH 222
            +    KL ++  A    D M  + +    V+YT L+     +  L     ++ +   K 
Sbjct: 442 LINGHCKLGNLSAAVSFFDEMIDKGLKPTVVSYTSLISGYCNKGKLHEAFRLYHEMTGKG 501

Query: 223 YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMM-GKLYINRTSEGRLRSSRLDIPI 281
            + + ++    + +  R   +  A+     M+   MM  ++  N   EG  +        
Sbjct: 502 IAPNTYTFTTLISALFRANRMTDAFRLFDEMLEQNMMPNEVTYNVMIEGHCKEG------ 555

Query: 282 PLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSD 341
                                     N+  A +L+ QM   GL P ++TY   I ++ S 
Sbjct: 556 --------------------------NTVKAFELLNQMVQKGLVPDTYTYRPLISSLCST 589

Query: 342 RGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAF 401
             +    + +  + + + K  +   + L     K   L  A  +  ++ +         +
Sbjct: 590 GRVCEAKKFIDDLHREHFKLNEMCYSALLHGYCKEGRLRDALGVCREMVKRGVDMDLVCY 649

Query: 402 LAACDTMDKPERAIKIFAKMR----QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDS 457
               D   K +    +F  ++    Q+LRPD   Y  +              + +S+  S
Sbjct: 650 AVLIDGTIKEQDTSAVFGLLKNMHDQRLRPDKVIYTSMI-------------DGYSKAGS 696

Query: 458 AKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMI--RELI--QYFCDSKTPLGTPTYN 513
            K+   I   M       + ++   L+  L   G++   EL+  +    + TP    TY 
Sbjct: 697 VKKAFGIWDIMIDEGCTPNIVTYTTLINELCKAGLMDKAELLWKEMLVSNSTP-NHVTYC 755

Query: 514 TVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI-DCCSIIRCFKSASALVSMMVR 572
             L  L       +A+++   M   G+  N  +YNI++   C + R  + A+ L+  M+ 
Sbjct: 756 CFLDHLAREGSMEKAVQLHNDMLK-GLLANTVSYNILVRGFCKLGR-VEEATKLLDEMID 813

Query: 573 DGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDV 632
           +  +P  +TY+ +I      G+ D A+   D +  +G+  D L YN ++   C  G +  
Sbjct: 814 NAIFPDCITYSTIIYQCCRRGNLDGAIEFWDTMLNKGLKPDTLAYNFLIYGCCIAGELGK 873

Query: 633 IEFIIEQMHQNKVQPDPST 651
              + + M +  V+P+ +T
Sbjct: 874 AFELRDDMIRRGVKPNQAT 892



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 93/476 (19%), Positives = 181/476 (38%), Gaps = 61/476 (12%)

Query: 234 VWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLR 293
           + SF  L++   A E +Q M +  +   +Y N    G  ++ R+   + +    + K L 
Sbjct: 235 IRSFCELKNFAKAKEMIQRMESSDLNVVVY-NVLIHGLCKNKRVWEAVEIKNGLIQKGLT 293

Query: 294 WS---FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEV 350
            S   +  ++    + Q   +   +M +M  LG  P+       +  +     + +  ++
Sbjct: 294 ASEVTYCTLVLGLCKVQEFEVGAGVMDEMIELGFVPTEAALSSLVEGLRRKGKVVDAFDL 353

Query: 351 LKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDT 407
           +  +++    P       L     K  + D AE L  ++     C N   +S  + +   
Sbjct: 354 VNRVKKVGAMPSLFVYNALINSLCKDGKFDEAELLFKEMGEKGLCANDVTYSILIDSFCR 413

Query: 408 MDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM 466
             K + AI    KM    ++  +  Y  L      +N   + GN+ + V           
Sbjct: 414 RGKLDTAIHFLGKMIMAGIKITVYPYNSL------INGHCKLGNLSAAVSFFD------- 460

Query: 467 DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQ 523
           +M    ++ + +S  +L+     +G + E  + + +       P   T+ T++ +L  A 
Sbjct: 461 EMIDKGLKPTVVSYTSLISGYCNKGKLHEAFRLYHEMTGKGIAPNTYTFTTLISALFRAN 520

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDC-CSIIRCFKSASALVSMMVRDGFYPQTMTY 582
               A  +F +M    + PN  TYN+MI+  C      K A  L++ MV+ G  P T TY
Sbjct: 521 RMTDAFRLFDEMLEQNMMPNEVTYNVMIEGHCKEGNTVK-AFELLNQMVQKGLVPDTYTY 579

Query: 583 TALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI------------ 630
             LI  L   G   EA   +D +  E    + + Y+ +L   C++GR+            
Sbjct: 580 RPLISSLCSTGRVCEAKKFIDDLHREHFKLNEMCYSALLHGYCKEGRLRDALGVCREMVK 639

Query: 631 -----DVIEF------------------IIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
                D++ +                  +++ MH  +++PD      +  GY   G
Sbjct: 640 RGVDMDLVCYAVLIDGTIKEQDTSAVFGLLKNMHDQRLRPDKVIYTSMIDGYSKAG 695



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 63/301 (20%), Positives = 130/301 (43%), Gaps = 15/301 (4%)

Query: 380 DLAEALLDQISRC--TNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLF 436
           ++ EALLD   +C   +   F   + +     +   ++ IF  MRQ +L P +RT   + 
Sbjct: 141 EVFEALLDCFEKCDFISSLGFDLLIQSYVQEKRMFDSVLIFRLMRQCELMPQVRTLGEVL 200

Query: 437 SLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIREL 496
           +    +        +F ++ S      I + +A   +  S   +KN  KA       +E+
Sbjct: 201 NGLAKIRRVDMVLVLFGEILSMGIRPDIYIYVA---VIRSFCELKNFAKA-------KEM 250

Query: 497 IQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSI 556
           IQ      + L    YN ++H L + +    A+EI   +   G+  +  TY  ++     
Sbjct: 251 IQRM--ESSDLNVVVYNVLIHGLCKNKRVWEAVEIKNGLIQKGLTASEVTYCTLVLGLCK 308

Query: 557 IRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLL 616
           ++ F+  + ++  M+  GF P     ++L++ L   G   +A +L++ V   G    + +
Sbjct: 309 VQEFEVGAGVMDEMIELGFVPTEAALSSLVEGLRRKGKVVDAFDLVNRVKKVGAMPSLFV 368

Query: 617 YNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
           YN ++   C+ G+ D  E + ++M +  +  +  T   +   +   G  ++A+  L  + 
Sbjct: 369 YNALINSLCKDGKFDEAELLFKEMGEKGLCANDVTYSILIDSFCRRGKLDTAIHFLGKMI 428

Query: 677 M 677
           M
Sbjct: 429 M 429



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 74/360 (20%), Positives = 132/360 (36%), Gaps = 54/360 (15%)

Query: 327 SSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALL 386
           SS  +D  I++ V ++ + + + + ++M+Q  L PQ  T+  +    +K   +D+   L 
Sbjct: 157 SSLGFDLLIQSYVQEKRMFDSVLIFRLMRQCELMPQVRTLGEVLNGLAKIRRVDMVLVLF 216

Query: 387 DQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPY 446
            +I                               +   +RPDI  Y  +   F  +    
Sbjct: 217 GEI-------------------------------LSMGIRPDIYIYVAVIRSFCELKNFA 245

Query: 447 EEGNMFSQVDSAK----RINAIEMDMARNNIQHSHISMKNLLKALG---AEGMIRELIQY 499
           +   M  +++S+       N +   + +N      + +KN L   G   +E     L+  
Sbjct: 246 KAKEMIQRMESSDLNVVVYNVLIHGLCKNKRVWEAVEIKNGLIQKGLTASEVTYCTLVLG 305

Query: 500 FC------------DSKTPLGTPTYNTVLHSLVEAQESH----RAMEIFKQMKTCGIPPN 543
            C            D    LG       L SLVE          A ++  ++K  G  P+
Sbjct: 306 LCKVQEFEVGAGVMDEMIELGFVPTEAALSSLVEGLRRKGKVVDAFDLVNRVKKVGAMPS 365

Query: 544 AATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLD 603
              YN +I+       F  A  L   M   G     +TY+ LI      G  D A++ L 
Sbjct: 366 LFVYNALINSLCKDGKFDEAELLFKEMGEKGLCANDVTYSILIDSFCRRGKLDTAIHFLG 425

Query: 604 LVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
            + + GI   V  YN+++   C+ G +       ++M    ++P   +   + SGY N G
Sbjct: 426 KMIMAGIKITVYPYNSLINGHCKLGNLSAAVSFFDEMIDKGLKPTVVSYTSLISGYCNKG 485



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 73/393 (18%), Positives = 151/393 (38%), Gaps = 43/393 (10%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           + +  VI +    +N   A++++ +M+S  L      Y+  I  +  ++ +   +E+   
Sbjct: 229 YIYVAVIRSFCELKNFAKAKEMIQRMESSDLNVV--VYNVLIHGLCKNKRVWEAVEIKNG 286

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPER 413
           + Q  L   + T  TL +   K  E ++   ++D++       P  A L++         
Sbjct: 287 LIQKGLTASEVTYCTLVLGLCKVQEFEVGAGVMDEMIE-LGFVPTEAALSS--------- 336

Query: 414 AIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNI 473
              +   +R+K +        +   F  VN   + G M S       IN++  D   +  
Sbjct: 337 ---LVEGLRRKGK--------VVDAFDLVNRVKKVGAMPSLFVYNALINSLCKDGKFDEA 385

Query: 474 QHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFK 533
           +        L K +G +G+        C +       TY+ ++ S     +   A+    
Sbjct: 386 EL-------LFKEMGEKGL--------CANDV-----TYSILIDSFCRRGKLDTAIHFLG 425

Query: 534 QMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYG 593
           +M   GI      YN +I+    +    +A +    M+  G  P  ++YT+LI    + G
Sbjct: 426 KMIMAGIKITVYPYNSLINGHCKLGNLSAAVSFFDEMIDKGLKPTVVSYTSLISGYCNKG 485

Query: 594 DFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCH 653
              EA  L   ++ +GI  +   + T++       R+     + ++M +  + P+  T +
Sbjct: 486 KLHEAFRLYHEMTGKGIAPNTYTFTTLISALFRANRMTDAFRLFDEMLEQNMMPNEVTYN 545

Query: 654 FVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
            +  G+   G    A E L  +  + L  +  T
Sbjct: 546 VMIEGHCKEGNTVKAFELLNQMVQKGLVPDTYT 578


>gi|242054089|ref|XP_002456190.1| hypothetical protein SORBIDRAFT_03g031900 [Sorghum bicolor]
 gi|241928165|gb|EES01310.1| hypothetical protein SORBIDRAFT_03g031900 [Sorghum bicolor]
          Length = 731

 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 82/365 (22%), Positives = 152/365 (41%), Gaps = 35/365 (9%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ VI  C R     L  +++ +M S GL P + T+   + A V    +     +++ M
Sbjct: 260 TYNVVIKMCARAGRKDLVARVLERMLSSGLAPCATTFHSLVAAFVGFGDIATAERIVQAM 319

Query: 355 QQNNLKPQDSTIATLSVECSKALEL-DLAEALLDQISRCTNPKPFSAFLAACDTMDKPER 413
           ++   K     +  ++++C  A ++ +   ALLD I   +                + E 
Sbjct: 320 REER-KDICLLLRAVAMDCDGATDVVEEGAALLDDIVAGS----------------EQEL 362

Query: 414 AIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNI 473
                  + +   P+ R Y  L   + N        +    V  A R  A     +R + 
Sbjct: 363 GADEVPLLPKAYPPNARVYTTLMKGYMNAG----RVDDVVAVLRAMRQEARTAPASRPD- 417

Query: 474 QHSHISMKNLLKAL-GAEGMIRE--LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAME 530
              H++   ++ AL GA  + R   ++        P    TYN +L    +  +  +A E
Sbjct: 418 ---HVTYTTVMSALVGAGDVARAHAVLDEMAADGVPANRVTYNVLLKGYCQQLQIGKARE 474

Query: 531 IFKQMKT-CGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
           +F++M T  GI P   TYN ++D C +      A A  + M   G  P T++YT L+K  
Sbjct: 475 LFEEMVTDAGIQPGVVTYNTLMDGCVLSDDSAGALAFFNEMRSRGIAPSTVSYTTLMKAF 534

Query: 590 LDYGDFDEALNLLDLVSLEGIPH---DVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
              G    A  + +   +E  P    D   +N +++  C  G+++  + ++E+M +  VQ
Sbjct: 535 AVSGQPKVAHKVFE--EMERDPRVTVDRAAWNMLVEGYCRLGQVETAKQVVERMKERGVQ 592

Query: 647 PDPST 651
           PD +T
Sbjct: 593 PDVAT 597



 Score = 50.1 bits (118), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 62/131 (47%), Gaps = 16/131 (12%)

Query: 541 PPNAATYNIMI----------DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590
           PPNA  Y  ++          D  +++R  +   A  +   R    P  +TYT ++  L+
Sbjct: 375 PPNARVYTTLMKGYMNAGRVDDVVAVLRAMRQ-EARTAPASR----PDHVTYTTVMSALV 429

Query: 591 DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK-VQPDP 649
             GD   A  +LD ++ +G+P + + YN +LK  C++ +I     + E+M  +  +QP  
Sbjct: 430 GAGDVARAHAVLDEMAADGVPANRVTYNVLLKGYCQQLQIGKARELFEEMVTDAGIQPGV 489

Query: 650 STCHFVFSGYV 660
            T + +  G V
Sbjct: 490 VTYNTLMDGCV 500



 Score = 45.8 bits (107), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 30/141 (21%), Positives = 60/141 (42%), Gaps = 13/141 (9%)

Query: 577 PQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFI 636
           P    + + +    D GD      L D +S      D L YN ++K     GR D++  +
Sbjct: 221 PDAAAFNSALSACADAGDCRRFRQLFDAMSEWSAAADALTYNVVIKMCARAGRKDLVARV 280

Query: 637 IEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL------------SMRMLCEEV 684
           +E+M  + + P  +T H + + +V  G   +A   +Q +            ++ M C+  
Sbjct: 281 LERMLSSGLAPCATTFHSLVAAFVGFGDIATAERIVQAMREERKDICLLLRAVAMDCDGA 340

Query: 685 S-TLEEKRSDFEDLILAEDSE 704
           +  +EE  +  +D++   + E
Sbjct: 341 TDVVEEGAALLDDIVAGSEQE 361



 Score = 42.0 bits (97), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 86/435 (19%), Positives = 159/435 (36%), Gaps = 62/435 (14%)

Query: 156 PILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEI 215
           P    +NS L ACA            D M       + +TY  ++K+         V  +
Sbjct: 221 PDAAAFNSALSACADAGDCRRFRQLFDAMSEWSAAADALTYNVVIKMCARAGRKDLVARV 280

Query: 216 WEDYIKH-YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRS 274
            E  +    +    +    V +F    D+ +A   +Q M                   R 
Sbjct: 281 LERMLSSGLAPCATTFHSLVAAFVGFGDIATAERIVQAM-------------------RE 321

Query: 275 SRLDIPIPLNALP--------VMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQP 326
            R DI + L A+         V++       D++   G  Q  G  E  +L        P
Sbjct: 322 ERKDICLLLRAVAMDCDGATDVVEEGAALLDDIV--AGSEQELGADEVPLLPK---AYPP 376

Query: 327 SSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNL-----KPQDSTIATLSVECSKALELDL 381
           ++  Y   ++  ++   + + + VL+ M+Q        +P   T  T+      A ++  
Sbjct: 377 NARVYTTLMKGYMNAGRVDDVVAVLRAMRQEARTAPASRPDHVTYTTVMSALVGAGDVAR 436

Query: 382 AEALLDQISRCTNPK---PFSAFLAACDTMDKPERAIKIFAKM--RQKLRPDIRTYELLF 436
           A A+LD+++    P     ++  L       +  +A ++F +M     ++P + TY  L 
Sbjct: 437 AHAVLDEMAADGVPANRVTYNVLLKGYCQQLQIGKARELFEEMVTDAGIQPGVVTYNTLM 496

Query: 437 SLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIREL 496
                      +G + S  DSA  + A   +M    I  S +S   L+KA    G  +  
Sbjct: 497 -----------DGCVLSD-DSAGAL-AFFNEMRSRGIAPSTVSYTTLMKAFAVSGQPKVA 543

Query: 497 IQYF----CDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID 552
            + F     D +  +    +N ++       +   A ++ ++MK  G+ P+ ATY  +  
Sbjct: 544 HKVFEEMERDPRVTVDRAAWNMLVEGYCRLGQVETAKQVVERMKERGVQPDVATYGSLAK 603

Query: 553 CCSIIRCFKSASALV 567
             ++ R  K   ALV
Sbjct: 604 GVAMAR--KPGEALV 616


>gi|224137250|ref|XP_002327079.1| predicted protein [Populus trichocarpa]
 gi|222835394|gb|EEE73829.1| predicted protein [Populus trichocarpa]
          Length = 795

 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 109/533 (20%), Positives = 204/533 (38%), Gaps = 34/533 (6%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y  ++   C+ G   +A N+   +  R GI P +  YN+ L    +      A     LM
Sbjct: 245 YCTLVDGYCRDGLSSKAFNVCDQM-LRKGIEPTVVTYNTLLKGLCRFGDYKDALRLWHLM 303

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYSLSIFSLRKFVWSFTRLRDL 243
             R V  NEV Y  LL       + S    +W+D + +  + SI++    +    ++ ++
Sbjct: 304 LQRGVTPNEVGYCTLLDGLFKMGDFSRALTLWDDILARGINKSIYAFNTMINGLCKMGEM 363

Query: 244 KSAYETLQHMVALAMMGKLYINRT-SEGRLRSSRLDIPIPLNALPVMKVLRWS---FSDV 299
             A ET + M  L         RT S+G  +   ++    +      + +  S   ++ +
Sbjct: 364 DGAKETFKRMEELGCKPDGITYRTLSDGYCKVGNVEEAFKIKEKMEKEEIFPSIEMYNSL 423

Query: 300 IHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNL 359
           I     ++       L+ +M + GL P+  TY   I        L         M     
Sbjct: 424 IVGLFTSKKISKLIDLLAEMDTRGLSPNVVTYGALIAGWCDQGRLDKAFSAYFEMIGKGF 483

Query: 360 KPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIF- 418
            P     + +     +   +D A  LL ++        F   L          R ++ F 
Sbjct: 484 APNVIICSKIVSSLYRLGRIDEANMLLQKMV------DFDLVL--------DHRCLEDFQ 529

Query: 419 -AKMRQ----KLRPDIRTYELLFSLFGNV--NAPYEEGNMFSQVDSAKRINAIEMDMARN 471
            A +R+    K+   +    + FSL  NV  N          +V+ A+R     + ++  
Sbjct: 530 NADIRKLDCWKIADTLDESAIKFSLPNNVVYNIAMAGLCKSGKVNDARRFF---LGLSHG 586

Query: 472 NIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRA 528
           +    + +   L+    A G + E   L     +        TYN +L+ L ++    RA
Sbjct: 587 SFTPDNFTYCTLIHGFSAAGYVNEAFNLRDEMVNKGLVPNITTYNALLNGLCKSGYLDRA 646

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
             +F ++   G+ PN  TYNI+ID        + A  L   M+++G  P  +TY++LI  
Sbjct: 647 RRLFDKLHLKGLIPNVVTYNILIDGYCKSGSPREALDLRGKMLKEGISPSIITYSSLING 706

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMH 641
                D +EA+ LL+ +    +   +  ++ +++   + G +  +  +   MH
Sbjct: 707 FCKQSDVEEAMKLLNEMKASNVDQTIATFSKLVEGCIQHGDVKKMSKLHNMMH 759



 Score = 70.9 bits (172), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 68/153 (44%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           +Y T++        S +A  +  QM   GI P   TYN ++        +K A  L  +M
Sbjct: 244 SYCTLVDGYCRDGLSSKAFNVCDQMLRKGIEPTVVTYNTLLKGLCRFGDYKDALRLWHLM 303

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           ++ G  P  + Y  L+  L   GDF  AL L D +   GI   +  +NT++   C+ G +
Sbjct: 304 LQRGVTPNEVGYCTLLDGLFKMGDFSRALTLWDDILARGINKSIYAFNTMINGLCKMGEM 363

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
           D  +   ++M +   +PD  T   +  GY   G
Sbjct: 364 DGAKETFKRMEELGCKPDGITYRTLSDGYCKVG 396



 Score = 69.3 bits (168), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 118/609 (19%), Positives = 226/609 (37%), Gaps = 99/609 (16%)

Query: 127 LMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDS 186
           +M+ A CK G +E A   +  + E+ G       YNS +     L  +  A   L  M  
Sbjct: 71  IMVNAYCKAGKVERAVEFVREM-EKLGFELNAVSYNSLVDGYVSLGDIEGAKGVLKFMSE 129

Query: 187 RMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSI--FSLRKFVWSFTRLRDLK 244
           + V +N+VT T L+K    Q  +    ++  +  K   + +  ++    +  + ++  + 
Sbjct: 130 KGVMRNKVTLTLLIKGYCKQCKVEEAEKVLREMEKEDGVVVDEYAYGALIDGYCKVGKMG 189

Query: 245 SAYETLQHMVALAMMGKLYI-NRTSEGRLRSSRLDIPIPLNALPVMKVL-----RWSFSD 298
            A      M+ + +   L++ N    G  ++ ++     L  L  M+ L      +S+  
Sbjct: 190 DAIRVRDEMLKVGLKMNLFVCNSLINGYCKNGQVHEGERL--LMCMRKLDLKPDSYSYCT 247

Query: 299 VIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNN 358
           ++    R   S  A  +  QM   G++P+  TY+  ++ +      ++ + +  +M Q  
Sbjct: 248 LVDGYCRDGLSSKAFNVCDQMLRKGIEPTVVTYNTLLKGLCRFGDYKDALRLWHLMLQRG 307

Query: 359 LKPQDSTIATLSVECSKALELDLAEALLDQI-SRCTNPK--PFSAFLAACDTMDKPERAI 415
           + P +    TL     K  +   A  L D I +R  N     F+  +     M + + A 
Sbjct: 308 VTPNEVGYCTLLDGLFKMGDFSRALTLWDDILARGINKSIYAFNTMINGLCKMGEMDGAK 367

Query: 416 KIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQ 474
           + F +M +   +PD  TY  L   +  V    E   +  +++  +   +IEM        
Sbjct: 368 ETFKRMEELGCKPDGITYRTLSDGYCKVGNVEEAFKIKEKMEKEEIFPSIEM-------- 419

Query: 475 HSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQ 534
                                                YN+++  L  +++  + +++  +
Sbjct: 420 -------------------------------------YNSLIVGLFTSKKISKLIDLLAE 442

Query: 535 MKTCGIPPNAATYNIMI-DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYG 593
           M T G+ PN  TY  +I   C   R  K+ SA   M+ + GF P  +  + ++  L   G
Sbjct: 443 MDTRGLSPNVVTYGALIAGWCDQGRLDKAFSAYFEMIGK-GFAPNVIICSKIVSSLYRLG 501

Query: 594 DFDEALNLL------DLV----SLE--------------------------GIPHDVLLY 617
             DEA  LL      DLV     LE                           +P++V +Y
Sbjct: 502 RIDEANMLLQKMVDFDLVLDHRCLEDFQNADIRKLDCWKIADTLDESAIKFSLPNNV-VY 560

Query: 618 NTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSM 677
           N  +   C+ G+++        +      PD  T   +  G+   G+ N A      +  
Sbjct: 561 NIAMAGLCKSGKVNDARRFFLGLSHGSFTPDNFTYCTLIHGFSAAGYVNEAFNLRDEMVN 620

Query: 678 RMLCEEVST 686
           + L   ++T
Sbjct: 621 KGLVPNITT 629



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/192 (22%), Positives = 91/192 (47%), Gaps = 6/192 (3%)

Query: 483 LLKALGAEGMIRELIQYFCDSKTPLGTP----TYNTVLHSLVEAQESHRAMEIFKQMKTC 538
           +LK    +GM++  +  F D+    G      + N++L +LV+  ES+ A+ ++ QM+  
Sbjct: 2   ILKVYAEKGMVKNALHVF-DNMGKYGRKPSLRSCNSLLSNLVKRGESYSAVLVYDQMRRL 60

Query: 539 GIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEA 598
            I P+  T  IM++        + A   V  M + GF    ++Y +L+   +  GD + A
Sbjct: 61  DIVPDVFTCAIMVNAYCKAGKVERAVEFVREMEKLGFELNAVSYNSLVDGYVSLGDIEGA 120

Query: 599 LNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMH-QNKVQPDPSTCHFVFS 657
             +L  +S +G+  + +    ++K  C++ +++  E ++ +M  ++ V  D      +  
Sbjct: 121 KGVLKFMSEKGVMRNKVTLTLLIKGYCKQCKVEEAEKVLREMEKEDGVVVDEYAYGALID 180

Query: 658 GYVNCGFHNSAM 669
           GY   G    A+
Sbjct: 181 GYCKVGKMGDAI 192



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 84/398 (21%), Positives = 165/398 (41%), Gaps = 39/398 (9%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTY----DGFIRAIVSDRGLRNGME 349
           ++F+ +I+   +      A++   +M+ LG +P   TY    DG+ +    +   +   +
Sbjct: 348 YAFNTMINGLCKMGEMDGAKETFKRMEELGCKPDGITYRTLSDGYCKVGNVEEAFKIKEK 407

Query: 350 VLKIMQQNNLKPQDSTIATL--SVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDT 407
           + K     +++  +S I  L  S + SK ++L LAE  +D      N   + A +A    
Sbjct: 408 MEKEEIFPSIEMYNSLIVGLFTSKKISKLIDL-LAE--MDTRGLSPNVVTYGALIAGWCD 464

Query: 408 MDKPERAIKIFAKMRQK-LRPD-IRTYELLFSLF--GNVNAPYEEGNMFSQVDSAKRINA 463
             + ++A   + +M  K   P+ I   +++ SL+  G +    +E NM  Q         
Sbjct: 465 QGRLDKAFSAYFEMIGKGFAPNVIICSKIVSSLYRLGRI----DEANMLLQ-------KM 513

Query: 464 IEMDMARN-----NIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHS 518
           ++ D+  +     + Q++ I   +  K   A+ +    I++   +        YN  +  
Sbjct: 514 VDFDLVLDHRCLEDFQNADIRKLDCWKI--ADTLDESAIKFSLPNNV-----VYNIAMAG 566

Query: 519 LVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQ 578
           L ++ + + A   F  +      P+  TY  +I   S       A  L   MV  G  P 
Sbjct: 567 LCKSGKVNDARRFFLGLSHGSFTPDNFTYCTLIHGFSAAGYVNEAFNLRDEMVNKGLVPN 626

Query: 579 TMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIE 638
             TY AL+  L   G  D A  L D + L+G+  +V+ YN ++   C+ G       +  
Sbjct: 627 ITTYNALLNGLCKSGYLDRARRLFDKLHLKGLIPNVVTYNILIDGYCKSGSPREALDLRG 686

Query: 639 QMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
           +M +  + P   T   + +G+      +   EA+++L+
Sbjct: 687 KMLKEGISPSIITYSSLINGFCK---QSDVEEAMKLLN 721



 Score = 42.0 bits (97), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 78/354 (22%), Positives = 134/354 (37%), Gaps = 36/354 (10%)

Query: 108 ETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGA 167
           ET++ MEE     +   Y  +    CK G +EEA  +   + E+  I+P + +YNS +  
Sbjct: 368 ETFKRMEELGCKPDGITYRTLSDGYCKVGNVEEAFKIKEKM-EKEEIFPSIEMYNSLI-- 424

Query: 168 CAKLHSMVHANLCLDL---MDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHY 223
              L +    +  +DL   MD+R +  N VTY  L+     Q  L      + + I K +
Sbjct: 425 -VGLFTSKKISKLIDLLAEMDTRGLSPNVVTYGALIAGWCDQGRLDKAFSAYFEMIGKGF 483

Query: 224 SLSIFSLRKFVWSFTRLRDLKSAYETLQHMVAL--------------AMMGKLYINRTSE 269
           + ++    K V S  RL  +  A   LQ MV                A + KL   + ++
Sbjct: 484 APNVIICSKIVSSLYRLGRIDEANMLLQKMVDFDLVLDHRCLEDFQNADIRKLDCWKIAD 543

Query: 270 GRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSH 329
             L  S +   +P N +         ++  +    ++     A +  L +      P + 
Sbjct: 544 -TLDESAIKFSLPNNVV---------YNIAMAGLCKSGKVNDARRFFLGLSHGSFTPDNF 593

Query: 330 TYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI 389
           TY   I    +   +     +   M    L P  +T   L     K+  LD A  L D++
Sbjct: 594 TYCTLIHGFSAAGYVNEAFNLRDEMVNKGLVPNITTYNALLNGLCKSGYLDRARRLFDKL 653

Query: 390 ---SRCTNPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLF 439
                  N   ++  +        P  A+ +  KM ++ + P I TY  L + F
Sbjct: 654 HLKGLIPNVVTYNILIDGYCKSGSPREALDLRGKMLKEGISPSIITYSSLINGF 707


>gi|224111362|ref|XP_002315826.1| predicted protein [Populus trichocarpa]
 gi|222864866|gb|EEF01997.1| predicted protein [Populus trichocarpa]
          Length = 636

 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 107/529 (20%), Positives = 206/529 (38%), Gaps = 58/529 (10%)

Query: 153 GIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELL----KLAVWQKN 208
           GI P +  YN  +G   K   M+ A    + M    +  + VTY  L+    K+ +  ++
Sbjct: 127 GIAPTVFTYNIMIGHVCKEGDMLTARSLFEQMKKMGLTPDIVTYNTLIDGYGKIGLLDES 186

Query: 209 LSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTS 268
           +    E+           + +    + SF + + +  A+E  + M               
Sbjct: 187 VCLFEEM---KFMGCEPDVITYNALINSFCKFKGMLRAFEFFREMK-------------- 229

Query: 269 EGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSS 328
                    D  +  N +        S+S +I A  +     +A +  + M  +GL P+ 
Sbjct: 230 ---------DKDLKPNVI--------SYSTLIDALCKEGMMQMAIKFFVDMTRVGLLPNE 272

Query: 329 HTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ 388
            TY   I A      L     +   M Q ++     T  TL     +   ++ AE L   
Sbjct: 273 FTYSSLIDANCKAGNLGEAFMLADEMLQEHVDLNIVTYTTLLDGLCEEGMMNEAEELFRA 332

Query: 389 ISRCT---NPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNA 444
           + +     N + ++A +     +   ++A+++F +MR+K ++PDI  +  +  ++G  + 
Sbjct: 333 MGKAGVTPNLQAYTALIHGHIKVRSMDKAMELFNEMREKDIKPDILLWGTI--VWGLCSE 390

Query: 445 PYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRE---LIQYFC 501
                   S+++  K    I  +M  + I  + +    L+ A    G   E   L++   
Sbjct: 391 --------SKLEECK---IIMTEMKESGIGANPVIYTTLMDAYFKAGNRTEAINLLEEMR 439

Query: 502 DSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFK 561
           D  T +   T+  ++  L +      A+  F +M    + PN A Y  +ID      C  
Sbjct: 440 DLGTEVTVVTFCALIDGLCKRGLVQEAIYYFGRMPDHDLQPNVAVYTALIDGLCKNNCIG 499

Query: 562 SASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTIL 621
            A  L   M      P  + YTA+I   L +G+F EALN+ + +   GI  D+  Y +++
Sbjct: 500 DAKKLFDEMQDKNMIPDKIAYTAMIDGNLKHGNFQEALNMRNKMMEMGIELDLYAYTSLV 559

Query: 622 KKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAME 670
               + G++      + +M    + PD + C  +   +   G  + A+E
Sbjct: 560 WGLSQCGQVQQARKFLAEMIGKGIIPDETLCTRLLRKHYELGNIDEAIE 608



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 85/391 (21%), Positives = 153/391 (39%), Gaps = 31/391 (7%)

Query: 326 PSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEAL 385
           P    +D     +V    L    +    M +  + P+  +        SKA E DL+   
Sbjct: 60  PGFGVFDALFSVLVELGMLEAAGQCFLRMTKFRVLPKARSCNAFLHRLSKAGEGDLSRDF 119

Query: 386 L-DQISRCTNPKPFSAFLAACDTMDKPE--RAIKIFAKMRQ-KLRPDIRTYELLFSLFGN 441
             D +     P  F+  +       + +   A  +F +M++  L PDI TY  L   +G 
Sbjct: 120 FRDMVGAGIAPTVFTYNIMIGHVCKEGDMLTARSLFEQMKKMGLTPDIVTYNTLIDGYGK 179

Query: 442 VN------APYEEG----------------NMFSQVDSAKRINAIEMDMARNNIQHSHIS 479
           +         +EE                 N F +     R      +M   +++ + IS
Sbjct: 180 IGLLDESVCLFEEMKFMGCEPDVITYNALINSFCKFKGMLRAFEFFREMKDKDLKPNVIS 239

Query: 480 MKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMK 536
              L+ AL  EGM++  I++F D       P   TY++++ +  +A     A  +  +M 
Sbjct: 240 YSTLIDALCKEGMMQMAIKFFVDMTRVGLLPNEFTYSSLIDANCKAGNLGEAFMLADEML 299

Query: 537 TCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFD 596
              +  N  TY  ++D          A  L   M + G  P    YTALI   +     D
Sbjct: 300 QEHVDLNIVTYTTLLDGLCEEGMMNEAEELFRAMGKAGVTPNLQAYTALIHGHIKVRSMD 359

Query: 597 EALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVF 656
           +A+ L + +  + I  D+LL+ TI+   C + +++  + I+ +M ++ +  +P     + 
Sbjct: 360 KAMELFNEMREKDIKPDILLWGTIVWGLCSESKLEECKIIMTEMKESGIGANPVIYTTLM 419

Query: 657 SGYVNCGFHNSAMEALQVLSMRMLCEEVSTL 687
             Y   G    A+  L+   MR L  EV+ +
Sbjct: 420 DAYFKAGNRTEAINLLE--EMRDLGTEVTVV 448



 Score = 43.5 bits (101), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 62/308 (20%), Positives = 126/308 (40%), Gaps = 18/308 (5%)

Query: 93  ILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERY 152
           ++N   +    L   E +R M++K++  N   Y  ++ ALCK G ++ A      +  R 
Sbjct: 208 LINSFCKFKGMLRAFEFFREMKDKDLKPNVISYSTLIDALCKEGMMQMAIKFFVDM-TRV 266

Query: 153 GIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAV 212
           G+ P    Y+S + A  K  ++  A +  D M    V  N VTYT LL     +  ++  
Sbjct: 267 GLLPNEFTYSSLIDANCKAGNLGEAFMLADEMLQEHVDLNIVTYTTLLDGLCEEGMMNEA 326

Query: 213 HEIWEDYIK-HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA------LAMMGKLYIN 265
            E++    K   + ++ +    +    ++R +  A E    M        + + G +   
Sbjct: 327 EELFRAMGKAGVTPNLQAYTALIHGHIKVRSMDKAMELFNEMREKDIKPDILLWGTIVWG 386

Query: 266 RTSEGRLRSSRLDIP----IPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQS 321
             SE +L   ++ +       + A PV+      ++ ++ A  +  N   A  L+ +M+ 
Sbjct: 387 LCSESKLEECKIIMTEMKESGIGANPVI------YTTLMDAYFKAGNRTEAINLLEEMRD 440

Query: 322 LGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDL 381
           LG + +  T+   I  +     ++  +     M  ++L+P  +    L     K   +  
Sbjct: 441 LGTEVTVVTFCALIDGLCKRGLVQEAIYYFGRMPDHDLQPNVAVYTALIDGLCKNNCIGD 500

Query: 382 AEALLDQI 389
           A+ L D++
Sbjct: 501 AKKLFDEM 508


>gi|225434476|ref|XP_002278184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09060
           [Vitis vinifera]
          Length = 691

 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 80/164 (48%), Gaps = 1/164 (0%)

Query: 508 GTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALV 567
           G  +YN++L++L+E+ +   A   F   +T G+ PN  TYNI+I      + F  A  L+
Sbjct: 113 GIRSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAKELL 172

Query: 568 SMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEK 627
           + M   GF P   +Y  LI  L   G   +AL L D +   G+  DV  YN ++    +K
Sbjct: 173 NWMWEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKK 232

Query: 628 GRIDVIEFIIEQMHQN-KVQPDPSTCHFVFSGYVNCGFHNSAME 670
           G I     I E++ +   V P+  + + + +G   CG  + + E
Sbjct: 233 GDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFE 276



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 79/400 (19%), Positives = 162/400 (40%), Gaps = 74/400 (18%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           S++ +++A   +     AE   L  +++GL P+  TY+  I+     +      E+L  M
Sbjct: 116 SYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWM 175

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERA 414
            +    P   +  TL    +K   +  A  L D++                     PER 
Sbjct: 176 WEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEM---------------------PERG 214

Query: 415 IKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQ 474
           +           PD+  Y +L   F      +++G++ +  +  +R+  ++      NI 
Sbjct: 215 VT----------PDVACYNILIDGF------FKKGDILNASEIWERL--LKGPSVYPNIP 256

Query: 475 HSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQ 534
             ++ +  L K  G      E+      ++      TY+T++H L  +     A  ++K+
Sbjct: 257 SYNVMINGLCKC-GKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKE 315

Query: 535 MKTCGIPPNAATYNIMI----------DCCSIIRCFKSAS--ALVS--MMVRDGF----- 575
           M   G+ P+   YN M+          +C  + +  +      +VS  +++R  F     
Sbjct: 316 MAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRTVVSYNILIRGLFENAKV 375

Query: 576 ---------YPQ------TMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTI 620
                     P+      +MTY  L+  L   G  ++AL++L+         D   Y+++
Sbjct: 376 DEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSM 435

Query: 621 LKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYV 660
           +   C +GR+D +  +++QM ++  +P+P  C+ V +G+V
Sbjct: 436 INGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFV 475



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 127/597 (21%), Positives = 231/597 (38%), Gaps = 55/597 (9%)

Query: 90  FFHILNYCARSPDPLFVMETWRMME---EKEIGLNNKCYLLMMQALCKGGYLEEASNLIY 146
           F HIL    R  DP  V    R++E    ++        L +++A  K    ++A ++  
Sbjct: 46  FHHILK---RLFDPKLVAHVSRIVELIRTQKCKCPEDVALTVIKAYAKNSMPDQALDIFQ 102

Query: 147 FLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQ 206
            + E +G  P +  YNS L A  + +    A       ++  +  N  TY  L+K++  +
Sbjct: 103 RMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRK 162

Query: 207 KNLSAVHEI----WEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKL 262
           K      E+    WE   + +S  +FS    + S  +   +  A +    M    +   +
Sbjct: 163 KQFDKAKELLNWMWE---QGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDV 219

Query: 263 YI-NRTSEGRLRSSRLDIPIPLNALPVMKVLRW---------SFSDVIHA---CGRTQNS 309
              N   +G  +   +     LNA  + + L           S++ +I+    CG+   S
Sbjct: 220 ACYNILIDGFFKKGDI-----LNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDES 274

Query: 310 GLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL 369
               ++  +M+        +TY   I  +     L     V K M +N + P      T+
Sbjct: 275 ---FEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTM 331

Query: 370 SVECSKALELDLAEALLDQISR--CTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LR 426
                +A  ++    L   + +  C     ++  +       K + AI I+  + +K   
Sbjct: 332 LNGYLRAGRIEECLELWKVMEKEGCRTVVSYNILIRGLFENAKVDEAISIWELLPEKDCC 391

Query: 427 PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKA 486
            D  TY +L      V+   + G +   +   +     E +  R ++     +  +++  
Sbjct: 392 ADSMTYGVL------VHGLCKNGYLNKALSILE-----EAENGRGDLDT--FAYSSMING 438

Query: 487 LGAEGMIRELIQYFCDSKTPLGTP----TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPP 542
           L  EG + E+     D  T  G        N V++  V A +   A+  F  M + G  P
Sbjct: 439 LCREGRLDEVAGVL-DQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFP 497

Query: 543 NAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL 602
              TYN +I+  S    F  A ALV  M+  G+ P  +TY+ L+  L      D ALNL 
Sbjct: 498 TVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDMALNLW 557

Query: 603 DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
                +G   DV ++N I+   C  G+++    +  +M Q K  P+  T + +  G+
Sbjct: 558 CQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRKCVPNLVTHNTLMEGF 614



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 62/268 (23%), Positives = 122/268 (45%), Gaps = 13/268 (4%)

Query: 411 PERAIKIFAKMRQ--KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
           P++A+ IF +M +    +P IR+Y  L +     N   E  + F   ++        M +
Sbjct: 94  PDQALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFET--------MGL 145

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRA 528
           + N +Q  +I +K   +    +   +EL+ +  +        +Y T+++SL +      A
Sbjct: 146 SPN-LQTYNILIKISCRKKQFD-KAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDA 203

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRD-GFYPQTMTYTALIK 587
           +++F +M   G+ P+ A YNI+ID         +AS +   +++    YP   +Y  +I 
Sbjct: 204 LKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMIN 263

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
            L   G FDE+  +   +       D+  Y+T++   C  G +D    + ++M +N V P
Sbjct: 264 GLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSP 323

Query: 648 DPSTCHFVFSGYVNCGFHNSAMEALQVL 675
           D    + + +GY+  G     +E  +V+
Sbjct: 324 DVVVYNTMLNGYLRAGRIEECLELWKVM 351



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 95/518 (18%), Positives = 201/518 (38%), Gaps = 26/518 (5%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLD-L 183
           Y  ++ +L K GY+ +A  L   + ER G+ P +  YN  +    K   +++A+   + L
Sbjct: 187 YGTLINSLAKNGYMSDALKLFDEMPER-GVTPDVACYNILIDGFFKKGDILNASEIWERL 245

Query: 184 MDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH-YSLSIFSLRKFVWSFTRLRD 242
           +    V  N  +Y  ++             EIW    K+     +++    +       +
Sbjct: 246 LKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGN 305

Query: 243 LKSAYETLQHMVALAMMGKLYI-NRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIH 301
           L  A    + M    +   + + N    G LR+ R++  + L  +   +  R   S  I 
Sbjct: 306 LDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRTVVSYNIL 365

Query: 302 ACGRTQNSGLAEQLMLQ--MQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNL 359
             G  +N+ + E + +   +        S TY   +  +  +  L   + +L+  +    
Sbjct: 366 IRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRG 425

Query: 360 KPQDSTIATLSVECSKALELDLAEALLDQISR--CT-NPKPFSAFLAACDTMDKPERAIK 416
                  +++     +   LD    +LDQ+++  C  NP   +A +       K E A++
Sbjct: 426 DLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALR 485

Query: 417 IFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQH 475
            F  M  K   P + TY  L              N  S+ +      A+  +M     + 
Sbjct: 486 FFGNMVSKGCFPTVVTYNTLI-------------NGLSKAERFSEAYALVKEMLHKGWKP 532

Query: 476 SHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPT---YNTVLHSLVEAQESHRAMEIF 532
           + I+   L+  L     +   +  +C +      P    +N ++H L  + +   A++++
Sbjct: 533 NMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLY 592

Query: 533 KQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDY 592
            +MK     PN  T+N +++    +R F+ AS +   +++ G  P  ++Y   +K L   
Sbjct: 593 SEMKQRKCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQYGPQPDIISYNITLKGLCSC 652

Query: 593 GDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
               +A+  L+     G+    + +N +++   + G +
Sbjct: 653 HRISDAVGFLNDAVDRGVLPTAITWNILVRAVLDNGAL 690


>gi|449446442|ref|XP_004140980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Cucumis sativus]
          Length = 1000

 Score = 79.3 bits (194), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 80/334 (23%), Positives = 128/334 (38%), Gaps = 22/334 (6%)

Query: 326 PSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEAL 385
           P++  Y+  I  +         M+ L  M+  +  P   T   L   C    +L   + +
Sbjct: 306 PNTILYNKMISGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRILLCGCLNKKQLGRCKRI 365

Query: 386 LDQ-ISRCTNPK--PFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFS---- 437
           L   I+    P    F++ + A    D    A K+  KM + + +P    Y +L      
Sbjct: 366 LSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILIGSICS 425

Query: 438 ---LFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIR 494
              L G V     E      + +   +N + +           +S    L   G      
Sbjct: 426 GGELPGPVTFELAEKAYNEMLSAGTVLNKVNV-----------VSFARCLCGFGKFEKAY 474

Query: 495 ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCC 554
           ++I     +     T TY+ V+  L  A     A  +FK+MK  G+ P+  TY I+IDC 
Sbjct: 475 KVIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCF 534

Query: 555 SIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDV 614
           S     K A   +  MVRDG  P  +TYT LI   L       A  L +L+  +G   +V
Sbjct: 535 SKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNV 594

Query: 615 LLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
           + Y  ++   C+ G I+    I  +M  +   PD
Sbjct: 595 ITYTALIDGYCKSGNIEKACQIYARMRGDADIPD 628



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 130/572 (22%), Positives = 232/572 (40%), Gaps = 55/572 (9%)

Query: 114 EEKEIGLNNKCYLL--MMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKL 171
           E  E+GL+   + L    QALCK G   EA +LI    E+    P   +YN  +    + 
Sbjct: 266 EMSELGLSMDEFTLGFFAQALCKVGKWREALSLI----EKEDFVPNTILYNKMISGLCEA 321

Query: 172 HSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK---HYSLSIF 228
                A   L+ M S     N  TY  LL   + +K L     I    I    + S +IF
Sbjct: 322 SFFEEAMDFLNRMRSTSCIPNVQTYRILLCGCLNKKQLGRCKRILSMMIAEGCYPSYTIF 381

Query: 229 SLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIP------ 282
           +    V ++ +  D   AY+ L+ M          +     G + S   ++P P      
Sbjct: 382 N--SLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILIGSICSGG-ELPGPVTFELA 438

Query: 283 -------LNALPVM-KVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGF 334
                  L+A  V+ KV   SF+  +   G+ +    A +++ +M   G  P + TY   
Sbjct: 439 EKAYNEMLSAGTVLNKVNVVSFARCLCGFGKFEK---AYKVIHEMMGNGFVPDTSTYSEV 495

Query: 335 IRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVEC-SKALELDLAEALLDQISRCT 393
           I  + +   + N   + K M+   + P D    T+ ++C SKA  +  A   LD++ R  
Sbjct: 496 IGFLCNASRVENAFFLFKEMKGTGVVP-DVYTYTILIDCFSKAGIIKQAHNWLDEMVR-D 553

Query: 394 NPKP----FSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEE 448
             +P    ++  + A     K   A ++F  M  K   P++ TY  L   +       + 
Sbjct: 554 GCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDGYCKSGNIEKA 613

Query: 449 GNMFSQVDSAKRINAIEMDMA-RNNI--QHSHISMKNLLKALGAEGMIRE----LIQYFC 501
             +++++     I  ++M    +NN+  + + ++   L+  L     +++    L   F 
Sbjct: 614 CQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCKAHKVKDARDLLETMFV 673

Query: 502 DSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFK 561
           D   P  T  Y+ ++    +A +   A E+F +M   G  PN  TY+ +ID     R FK
Sbjct: 674 DGCEP-NTIVYDALIDGFCKAAKLDEAQEVFHKMVEHGYNPNVYTYSSLID-----RLFK 727

Query: 562 SAS-----ALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLL 616
                    ++S M+ +   P  + YT +I  L      DEA  L+ ++  +G   +V+ 
Sbjct: 728 DKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVT 787

Query: 617 YNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
           Y  ++    + G++D    +  +M      P+
Sbjct: 788 YTAMIDGFGKAGKVDKCLELFREMGSKGCAPN 819



 Score = 62.4 bits (150), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 79/402 (19%), Positives = 158/402 (39%), Gaps = 41/402 (10%)

Query: 302 ACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKP 361
            C   +  G  ++++  M + G  PS   ++  + A           ++LK M++   KP
Sbjct: 352 GCLNKKQLGRCKRILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKP 411

Query: 362 QDSTIATL------SVECSKALELDLAEALLDQI---SRCTNPKPFSAFLAACDTMDKPE 412
                  L        E    +  +LAE   +++       N     +F        K E
Sbjct: 412 GYVVYNILIGSICSGGELPGPVTFELAEKAYNEMLSAGTVLNKVNVVSFARCLCGFGKFE 471

Query: 413 RAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471
           +A K+  +M      PD  TY  +     N +       +F ++        +  D+   
Sbjct: 472 KAYKVIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKG----TGVVPDVYTY 527

Query: 472 NIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEI 531
            I     S   ++K   A   + E+++  C+        TY T++H+ ++A++   A E+
Sbjct: 528 TILIDCFSKAGIIKQ--AHNWLDEMVRDGCEPTVV----TYTTLIHAYLKAKKVSVANEL 581

Query: 532 FKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDG------FY--------- 576
           F+ M   G  PN  TY  +ID        + A  + + M  D        Y         
Sbjct: 582 FELMIAKGCFPNVITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAE 641

Query: 577 -PQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEF 635
            P  +TY AL+  L       +A +LL+ + ++G   + ++Y+ ++   C+  ++D  + 
Sbjct: 642 KPNVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQE 701

Query: 636 IIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAME-ALQVLS 676
           +  +M ++   P+  T    +S  ++  F +  ++  L+VLS
Sbjct: 702 VFHKMVEHGYNPNVYT----YSSLIDRLFKDKRLDLVLKVLS 739



 Score = 57.0 bits (136), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/180 (21%), Positives = 71/180 (39%)

Query: 451 MFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP 510
           +F + D       +  +M+   +     ++    +AL   G  RE +           T 
Sbjct: 250 VFLRADKLDTAQLVHREMSELGLSMDEFTLGFFAQALCKVGKWREALSLIEKEDFVPNTI 309

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
            YN ++  L EA     AM+   +M++    PN  TY I++  C   +       ++SMM
Sbjct: 310 LYNKMISGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRILLCGCLNKKQLGRCKRILSMM 369

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           + +G YP    + +L+       DF  A  LL  +         ++YN ++   C  G +
Sbjct: 370 IAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILIGSICSGGEL 429



 Score = 55.8 bits (133), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 76/362 (20%), Positives = 150/362 (41%), Gaps = 40/362 (11%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ +IHA  + +   +A +L   M + G  P+  TY   I        +    ++   M
Sbjct: 561 TYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDGYCKSGNIEKACQIYARM 620

Query: 355 Q--------------QNNL--KPQDSTIATLSVECSKALELDLAEALLDQ--ISRC-TNP 395
           +              +NN+  KP   T   L     KA ++  A  LL+   +  C  N 
Sbjct: 621 RGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNT 680

Query: 396 KPFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYE-LLFSLFGNVNAPYEEGNMFS 453
             + A +       K + A ++F KM      P++ TY  L+  LF +            
Sbjct: 681 IVYDALIDGFCKAAKLDEAQEVFHKMVEHGYNPNVYTYSSLIDRLFKD-----------K 729

Query: 454 QVDSAKRI--NAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPT 511
           ++D   ++    +E   A N + ++   M + L  +       +L+    +        T
Sbjct: 730 RLDLVLKVLSKMLENSCAPNIVIYTE--MIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVT 787

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           Y  ++    +A +  + +E+F++M + G  PN  TY ++I+ C        A AL+  M 
Sbjct: 788 YTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTVLINHCCATGHLDEAYALLEEM- 846

Query: 572 RDGFYPQTMTYTALIKILLDYG-DFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           +  ++P+ ++  +  K++  Y  +F  +L LL+ V   G    +LLY  ++    + GR+
Sbjct: 847 KQTYWPKHVS--SYCKVIEGYKREFILSLGLLEEVEKNGSAPIILLYKVLIDNFVKAGRL 904

Query: 631 DV 632
           +V
Sbjct: 905 EV 906



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 77/422 (18%), Positives = 153/422 (36%), Gaps = 93/422 (22%)

Query: 299 VIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNN 358
           +I  C R     +A + + +++  G +P+  TY+  ++  +    L     V + M +  
Sbjct: 212 LIRKCCRNGLWNVALEELGRLKDFGYKPTRMTYNALVQVFLRADKLDTAQLVHREMSELG 271

Query: 359 LKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIF 418
           L   + T+   +    K  +   A +L+++     N   ++  ++        E A+   
Sbjct: 272 LSMDEFTLGFFAQALCKVGKWREALSLIEKEDFVPNTILYNKMISGLCEASFFEEAMDFL 331

Query: 419 AKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSH 477
            +MR     P+++TY +L  L G +N          Q+   KRI                
Sbjct: 332 NRMRSTSCIPNVQTYRIL--LCGCLNK--------KQLGRCKRI---------------- 365

Query: 478 ISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTY---NTVLHSLVEAQESHRAMEIFKQ 534
                 L  + AEG                  P+Y   N+++H+  ++ +   A ++ K+
Sbjct: 366 ------LSMMIAEGCY----------------PSYTIFNSLVHAYCKSDDFSYAYKLLKK 403

Query: 535 MKTCGIPPNAATYNIMI-----------------------------------DCCSIIRC 559
           M+ C   P    YNI+I                                   +  S  RC
Sbjct: 404 MEKCECKPGYVVYNILIGSICSGGELPGPVTFELAEKAYNEMLSAGTVLNKVNVVSFARC 463

Query: 560 ------FKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHD 613
                 F+ A  ++  M+ +GF P T TY+ +I  L +    + A  L   +   G+  D
Sbjct: 464 LCGFGKFEKAYKVIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPD 523

Query: 614 VLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           V  Y  ++    + G I      +++M ++  +P   T   +   Y+     + A E  +
Sbjct: 524 VYTYTILIDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFE 583

Query: 674 VL 675
           ++
Sbjct: 584 LM 585



 Score = 47.8 bits (112), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 86/465 (18%), Positives = 164/465 (35%), Gaps = 106/465 (22%)

Query: 108 ETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNL--------------IYF-LGERY 152
           E + +M  K    N   Y  ++   CK G +E+A  +              +YF +    
Sbjct: 580 ELFELMIAKGCFPNVITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNV 639

Query: 153 GIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAV 212
              P +  Y + +    K H +  A   L+ M       N + Y  L+        L   
Sbjct: 640 AEKPNVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEA 699

Query: 213 HEIWEDYIKH-YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGR 271
            E++   ++H Y+ ++++    +    + + L    + L  M+  +    + I       
Sbjct: 700 QEVFHKMVEHGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVI------- 752

Query: 272 LRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTY 331
                                   ++++I    +   +  A +LML M+  G +P+  TY
Sbjct: 753 ------------------------YTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVTY 788

Query: 332 ----DGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLD 387
               DGF +A   D+ L    E+ + M      P   T   L   C     LD A ALL+
Sbjct: 789 TAMIDGFGKAGKVDKCL----ELFREMGSKGCAPNFVTYTVLINHCCATGHLDEAYALLE 844

Query: 388 QISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLR-----PDIRTYELLFSLFGNV 442
           ++ +   PK  S++   C  ++  +R   +   + +++      P I  Y++L   F   
Sbjct: 845 EMKQTYWPKHVSSY---CKVIEGYKREFILSLGLLEEVEKNGSAPIILLYKVLIDNF--- 898

Query: 443 NAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCD 502
               + G +   ++  K + +  M MA         + KNL                   
Sbjct: 899 ---VKAGRLEVALELHKEVISASMSMA---------AKKNL------------------- 927

Query: 503 SKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATY 547
                    Y ++++S   A +   A E+F  M   G+ P+  T+
Sbjct: 928 ---------YTSLIYSFSYASKIGHAFELFYDMIRDGVIPDLGTF 963


>gi|297820746|ref|XP_002878256.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324094|gb|EFH54515.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 582

 Score = 79.3 bits (194), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 79/388 (20%), Positives = 149/388 (38%), Gaps = 60/388 (15%)

Query: 294 WSFSD-----VIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGM 348
           W+FS+     +I A G+  N   AE+++  +  +G  P+  +Y   + +        N  
Sbjct: 135 WNFSEMDFLMLITAYGKLGNFNGAERVLSVLSKMGSSPNVISYTALMESYGRGGKCNNAE 194

Query: 349 EVLKIMQQNNLKPQDST---IATLSVECSKALELD-LAEALLDQISRCTNP--KPFSAFL 402
            + + MQ +  +P   T   I    VE  K  E + + E LLD+      P  K +   +
Sbjct: 195 AIFRRMQSSGPEPSAVTYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMI 254

Query: 403 AACDTMDKPERAIKIFAKMRQKLRPD-IRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI 461
                    ++A K+F+ M  K  P    TY  L S   N                 K +
Sbjct: 255 YMYKKAGNYDKARKVFSSMVGKGVPQSTVTYNSLMSFETNY----------------KEV 298

Query: 462 NAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVE 521
           + I   M R+ IQ   +S   L+KA G                                 
Sbjct: 299 SKIYDQMQRSGIQPDVVSYALLIKAYG--------------------------------R 326

Query: 522 AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMT 581
           A+    A+ +F++M   G+ P    YNI++D  +I    + A  +   M RD  +P   +
Sbjct: 327 ARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWS 386

Query: 582 YTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMH 641
           YT ++   ++  D + A      + ++G   +++ Y T++K   +   ++ +  + E+M 
Sbjct: 387 YTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGTMIKGYAKANDVEKMMEVYEKMR 446

Query: 642 QNKVQPDPSTCHFVFSGYVNCGFHNSAM 669
            + ++ + +    +      C    SA+
Sbjct: 447 LSGIKANQTILTTIMDASGRCKDFGSAL 474



 Score = 75.5 bits (184), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 73/334 (21%), Positives = 130/334 (38%), Gaps = 20/334 (5%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           S++ ++ + GR      AE +  +MQS G +PS+ TY   ++  V     +   EV + +
Sbjct: 176 SYTALMESYGRGGKCNNAEAIFRRMQSSGPEPSAVTYQIILKTFVEGDKFKEAEEVFETL 235

Query: 355 ---QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKP 411
              +++ LKP       +     KA   D A  +   +     P+    + +        
Sbjct: 236 LDEKKSPLKPDQKMYHMMIYMYKKAGNYDKARKVFSSMVGKGVPQSTVTYNSLMSFETNY 295

Query: 412 ERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           +   KI+ +M R  ++PD+ +Y LL   +G      E  ++F ++  A            
Sbjct: 296 KEVSKIYDQMQRSGIQPDVVSYALLIKAYGRARREEEALSVFEEMLDA------------ 343

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHR 527
             ++ +H +   LL A    GM+ +    F   +     P   +Y T+L + V A +   
Sbjct: 344 -GVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEG 402

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A + FK++K  G  PN  TY  MI   +     +    +   M   G        T ++ 
Sbjct: 403 AEKFFKRIKVDGFEPNIVTYGTMIKGYAKANDVEKMMEVYEKMRLSGIKANQTILTTIMD 462

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTIL 621
                 DF  AL     +   G+P D    N +L
Sbjct: 463 ASGRCKDFGSALGWYKEMESCGVPPDQKAKNVLL 496


>gi|147810269|emb|CAN75824.1| hypothetical protein VITISV_004157 [Vitis vinifera]
          Length = 1512

 Score = 79.3 bits (194), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 73/345 (21%), Positives = 139/345 (40%), Gaps = 48/345 (13%)

Query: 318  QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKAL 377
            ++  +G+QP  +T +  I    S R +  G  V     +   +P   T+ TL        
Sbjct: 971  KINDVGIQPDLYTLNILIHCCCSLRAVGCGFGVFGGFLKRGFEPDAVTVTTLVKGVWMEN 1030

Query: 378  ELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYEL 434
             +  A  L D++++     + K +   +       K   AIK+  KM+   + D+ TY +
Sbjct: 1031 GIPDAVQLFDEMTKKGLLGDAKTYGILINGLCKARKTGLAIKLHEKMKGNCKGDVFTYGM 1090

Query: 435  LFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIR 494
            +           E  +MFS++  A                                G++ 
Sbjct: 1091 IIDALCKDGMTTEALDMFSEMIGA--------------------------------GILP 1118

Query: 495  ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCC 554
            +++              Y++++  L        A+E FK+M+  GI  +  TYN +I   
Sbjct: 1119 DVV-------------VYSSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGL 1165

Query: 555  SIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDV 614
            S    +K  +  +++MV  GF P   T+T LI  L   G   EA  +L+L+  +G   D+
Sbjct: 1166 SRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMRHKGKEPDI 1225

Query: 615  LLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
            L YNT++   C  G+++    + E +    ++ +  + + + +GY
Sbjct: 1226 LTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGY 1270



 Score = 62.4 bits (150), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/178 (21%), Positives = 82/178 (46%)

Query: 495  ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCC 554
            +L +   D    L   +YN +++   + Q+   A   F++M+  G+ P+  TYN +I   
Sbjct: 1246 KLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRFFEEMRPKGLKPSTVTYNTLIGAL 1305

Query: 555  SIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDV 614
                  ++A  L   M   G + +  TY  L+  L   G  +EA++L   +       ++
Sbjct: 1306 CQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAMDLFQSIKKTEHKPNI 1365

Query: 615  LLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEAL 672
             +++ +L   C  G+++      +++ +N ++PD    + + +G  N G  + A++ L
Sbjct: 1366 EVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLL 1423



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 90/452 (19%), Positives = 177/452 (39%), Gaps = 87/452 (19%)

Query: 125  YLLMMQALCKGGYLEEASNLIY-FLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDL 183
            Y +++ ALCK G   EA ++    +G   GI P + VY+S +    +   +  A      
Sbjct: 1088 YGMIIDALCKDGMTTEALDMFSEMIGA--GILPDVVVYSSLMDGLCRFGRLKEALEFFKE 1145

Query: 184  MDSRMVGKNEVTYTELL----KLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTR 239
            M+ R +  +  TY  L+    +  +W K ++    +  D  + +S   F+    +    +
Sbjct: 1146 MEGRGISADVYTYNSLIHGLSRAGLW-KEVTWFLNLMVD--RGFSPDAFTFTILIDGLCK 1202

Query: 240  LRDLKSAYETLQHMV----------------ALAMMGKLYINRTSEGRLRSSRLDIPIPL 283
               +  A + L+ M                  L ++G+L        +L  S  D  I L
Sbjct: 1203 EGKVGEAQQILELMRHKGKEPDILTYNTLMNGLCLVGQL----EDATKLFESLADRGIKL 1258

Query: 284  NALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRG 343
            N         +S++ +I+   + Q    A +   +M+  GL+PS+ TY+  I A+     
Sbjct: 1259 NV--------FSYNILINGYCKDQKIDEAFRFFEEMRPKGLKPSTVTYNTLIGALCQSGR 1310

Query: 344  LRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLA 403
            +R   ++   MQ                 C + L+L     LLD +  C N         
Sbjct: 1311 VRTAQKLFVEMQT----------------CGQFLKLSTYCVLLDGL--CKN--------- 1343

Query: 404  ACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRIN 462
                    E A+ +F  +++ + +P+I  + +L           E    F ++      N
Sbjct: 1344 -----GHLEEAMDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISK----N 1394

Query: 463  AIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSL 519
             +E D    NI         L+  L  +GM+ E ++     +     P   T+N ++ +L
Sbjct: 1395 GLEPDTIAYNI---------LINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNL 1445

Query: 520  VEAQESHRAMEIFKQMKTCGIPPNAATYNIMI 551
            ++  E H A+++ ++M+     P+ A  ++++
Sbjct: 1446 LKENEIHEAIQLLEEMRNRNFSPDEAVTSMLL 1477



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 65/144 (45%), Gaps = 1/144 (0%)

Query: 500  FCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRC 559
             C    P  T T+N +L S+ +         +++++   GI P+  T NI+I CC  +R 
Sbjct: 938  LCSEPMPC-TDTFNHLLASVAKLGYYSTVFPMYRKINDVGIQPDLYTLNILIHCCCSLRA 996

Query: 560  FKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNT 619
                  +    ++ GF P  +T T L+K +       +A+ L D ++ +G+  D   Y  
Sbjct: 997  VGCGFGVFGGFLKRGFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTKKGLLGDAKTYGI 1056

Query: 620  ILKKACEKGRIDVIEFIIEQMHQN 643
            ++   C+  +  +   + E+M  N
Sbjct: 1057 LINGLCKARKTGLAIKLHEKMKGN 1080



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 72/168 (42%)

Query: 511  TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
            TY  ++ +L +   +  A+++F +M   GI P+   Y+ ++D        K A      M
Sbjct: 1087 TYGMIIDALCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEM 1146

Query: 571  VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
               G      TY +LI  L   G + E    L+L+   G   D   +  ++   C++G++
Sbjct: 1147 EGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKV 1206

Query: 631  DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678
               + I+E M     +PD  T + + +G    G    A +  + L+ R
Sbjct: 1207 GEAQQILELMRHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADR 1254


>gi|297742922|emb|CBI35789.3| unnamed protein product [Vitis vinifera]
          Length = 912

 Score = 79.3 bits (194), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 135/629 (21%), Positives = 237/629 (37%), Gaps = 75/629 (11%)

Query: 59  IVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCAR---SPDPLFVMETWR--MM 113
           I+ ALC   R   +H  L L  A H +      ++L   AR   S  P   +  +R  + 
Sbjct: 334 IIHALCDANRFSEAHHRLLLSFASHCVPDQRTCNVL--IARLLDSRTPHATLHVFRGLIA 391

Query: 114 EEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHS 173
              E   +   Y  ++  LC      EA  L + +  R G  P    Y + +    K+  
Sbjct: 392 ARPEFVPSLINYNRLIHQLCSFSQPNEAHGLFFDMRSR-GHCPNAVSYTTLIDGYCKIGE 450

Query: 174 MVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEI----WEDYIKHYSLS--- 226
              A    D M    V  N +TY+ LLK  + ++++    E+    W+  +     S   
Sbjct: 451 ETSAWKLFDEMLESGVVPNSLTYSVLLKGVLCKRDVERGRELMCKLWQKMMDENDPSVNN 510

Query: 227 ------IFSLRK---FVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRL 277
                 I SL K   F+  F    D+       +  V   M+  L   R       S  +
Sbjct: 511 AAFANLIDSLCKEGFFLEVFRIAEDMPQGKSVSEEFVYGQMIDSLC--RCGRNHGASRIV 568

Query: 278 DIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRA 337
            I       P +     S++ ++H   +      A QL+ +    G   S HTY   + A
Sbjct: 569 YIMRKRGFFPSLV----SYNYIVHGLSKEGGCMRAYQLLKEGVEFGYMMSEHTYKVLLEA 624

Query: 338 IVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP 397
           +  D  L    EV+++M                          L +  +DQ       + 
Sbjct: 625 LCRDADLCKAREVMQLM--------------------------LNKEGVDQT------RI 652

Query: 398 FSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVD 456
           ++ +L A   M+ P   + +   M Q + +PD+ T   + + F  +    E   +   + 
Sbjct: 653 YNIYLRALCLMNNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRVEEALKVLDDMV 712

Query: 457 SAKRINAIEMDMARNNIQHSHI--SMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNT 514
             K         A +++ ++ I   + NL +   A  ++R ++    +     G  T+N 
Sbjct: 713 MGKFC-------APDSVTYTTIICGLLNLGRTEEALDVLRRVMP---EKGFKPGVVTFNA 762

Query: 515 VLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDG 574
           VLH L + Q+++ A E+F  M + G+  N  TY I+ID          A      ++   
Sbjct: 763 VLHGLFKLQQANVATEVFNSMVSDGVAANTITYTIIIDGLFESDQIDEAKRFWDDVIWPS 822

Query: 575 FYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIE 634
                  Y A++K L   G  +EA + L  +   G+  +V+ YN ++  AC+ G      
Sbjct: 823 KVHDNFVYAAILKGLCRSGKLNEACDFLYELVDCGVTLNVVNYNILIDHACKLGSKREAY 882

Query: 635 FIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
            I+++M +N + PD  T   +   + N G
Sbjct: 883 TIVQEMKKNGLTPDAVTWRILHKLHGNVG 911



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 91/220 (41%), Gaps = 9/220 (4%)

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPT-----YNTVLHSLVEA 522
           M  N+   ++ +  NL+ +L  EG   E+ +   D   P G        Y  ++ SL   
Sbjct: 501 MDENDPSVNNAAFANLIDSLCKEGFFLEVFRIAED--MPQGKSVSEEFVYGQMIDSLCRC 558

Query: 523 QESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTY 582
             +H A  I   M+  G  P+  +YN ++   S       A  L+   V  G+     TY
Sbjct: 559 GRNHGASRIVYIMRKRGFFPSLVSYNYIVHGLSKEGGCMRAYQLLKEGVEFGYMMSEHTY 618

Query: 583 TALIKILLDYGDFDEALNLLDL-VSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMH 641
             L++ L    D  +A  ++ L ++ EG+     +YN  L+  C       +  ++  M 
Sbjct: 619 KVLLEALCRDADLCKAREVMQLMLNKEGVDQ-TRIYNIYLRALCLMNNPTELLNVLVFML 677

Query: 642 QNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLC 681
           Q + QPD  T + V +G+   G    A++ L  + M   C
Sbjct: 678 QTQCQPDVITLNTVINGFCKMGRVEEALKVLDDMVMGKFC 717



 Score = 48.9 bits (115), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 75/165 (45%), Gaps = 3/165 (1%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC-CSIIRCFKSASALVSM 569
           +YN ++H L +     RA ++ K+    G   +  TY ++++  C      K+   +  M
Sbjct: 582 SYNYIVHGLSKEGGCMRAYQLLKEGVEFGYMMSEHTYKVLLEALCRDADLCKAREVMQLM 641

Query: 570 MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
           + ++G   QT  Y   ++ L    +  E LN+L  +       DV+  NT++   C+ GR
Sbjct: 642 LNKEGV-DQTRIYNIYLRALCLMNNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGR 700

Query: 630 IDVIEFIIEQMHQNK-VQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           ++    +++ M   K   PD  T   +  G +N G    A++ L+
Sbjct: 701 VEEALKVLDDMVMGKFCAPDSVTYTTIICGLLNLGRTEEALDVLR 745



 Score = 48.5 bits (114), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 82/206 (39%), Gaps = 23/206 (11%)

Query: 496 LIQYFCDSKTPLGT---------------PT---YNTVLHSLVEAQESHRAMEIFKQMKT 537
           LI    DS+TP  T               P+   YN ++H L    + + A  +F  M++
Sbjct: 369 LIARLLDSRTPHATLHVFRGLIAARPEFVPSLINYNRLIHQLCSFSQPNEAHGLFFDMRS 428

Query: 538 CGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDE 597
            G  PNA +Y  +ID    I    SA  L   M+  G  P ++TY+ L+K +L   D + 
Sbjct: 429 RGHCPNAVSYTTLIDGYCKIGEETSAWKLFDEMLESGVVPNSLTYSVLLKGVLCKRDVER 488

Query: 598 ALNLL-----DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTC 652
              L+      ++       +   +  ++   C++G    +  I E M Q K   +    
Sbjct: 489 GRELMCKLWQKMMDENDPSVNNAAFANLIDSLCKEGFFLEVFRIAEDMPQGKSVSEEFVY 548

Query: 653 HFVFSGYVNCGFHNSAMEALQVLSMR 678
             +      CG ++ A   + ++  R
Sbjct: 549 GQMIDSLCRCGRNHGASRIVYIMRKR 574


>gi|255575578|ref|XP_002528689.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531861|gb|EEF33678.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 271

 Score = 79.3 bits (194), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 111/230 (48%), Gaps = 4/230 (1%)

Query: 446 YEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGA---EGMIRELIQYFCD 502
           +++G    +  +  RI   + +  + + + S + ++ LL A+ A   +G    L  +  D
Sbjct: 22  HKQGISLVEKHNGLRIKEQKQESVKFDAKASRLQVEKLLDAIRALPFKGRTEILDVFGKD 81

Query: 503 SKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKS 562
            + P     +N +L +LV A E   A+ ++  + T G+ P++ T++I+I C         
Sbjct: 82  GEIP-SISDFNDLLMALVIANELDLALNMYSDVSTLGLVPDSWTFSIVIRCHCKRNDADE 140

Query: 563 ASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILK 622
           A  ++  M+ +G  P  +T+T LI      G   +A  ++D+++  G   +V  YN +LK
Sbjct: 141 AKRVLDRMLENGLNPNVVTFTTLINSFCKKGKLQKAYEVIDVMNTIGCQPNVQTYNCLLK 200

Query: 623 KACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEAL 672
             C  G+++    I+E + ++ ++PD  T   +  G+   G    AM+ L
Sbjct: 201 GLCYIGKVEEAYEILEDIKKSSIEPDIYTYTAMMDGFCKVGRSEEAMQLL 250



 Score = 44.7 bits (104), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 49/100 (49%)

Query: 574 GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVI 633
           G  P + T++ +I+      D DEA  +LD +   G+  +V+ + T++   C+KG++   
Sbjct: 117 GLVPDSWTFSIVIRCHCKRNDADEAKRVLDRMLENGLNPNVVTFTTLINSFCKKGKLQKA 176

Query: 634 EFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
             +I+ M+    QP+  T + +  G    G    A E L+
Sbjct: 177 YEVIDVMNTIGCQPNVQTYNCLLKGLCYIGKVEEAYEILE 216



 Score = 42.7 bits (99), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 72/180 (40%), Gaps = 12/180 (6%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           F+D++ A        LA  +   + +LGL P S T+   IR             VL  M 
Sbjct: 90  FNDLLMALVIANELDLALNMYSDVSTLGLVPDSWTFSIVIRCHCKRNDADEAKRVLDRML 149

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLD---QISRCTNPKPFSAFLAACDTMDKPE 412
           +N L P   T  TL     K  +L  A  ++D    I    N + ++  L     + K E
Sbjct: 150 ENGLNPNVVTFTTLINSFCKKGKLQKAYEVIDVMNTIGCQPNVQTYNCLLKGLCYIGKVE 209

Query: 413 RAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471
            A +I   +++  + PDI TY  +   F  V    E   + ++        AIEM++  +
Sbjct: 210 EAYEILEDIKKSSIEPDIYTYTAMMDGFCKVGRSEEAMQLLNE--------AIEMELTDD 261


>gi|357454999|ref|XP_003597780.1| Beta-D-galactosidase [Medicago truncatula]
 gi|357455013|ref|XP_003597787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355486828|gb|AES68031.1| Beta-D-galactosidase [Medicago truncatula]
 gi|355486835|gb|AES68038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 639

 Score = 79.3 bits (194), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 98/494 (19%), Positives = 209/494 (42%), Gaps = 60/494 (12%)

Query: 119 GLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHAN 178
           G  N   L++MQ     G+ E+   L   +      +P    Y++ + A  KL+    A 
Sbjct: 196 GTYNSVILMLMQE----GHHEKVHELYNEMCSEGHCFPDTVTYSALISAFGKLNRDDSAV 251

Query: 179 LCLDLMDSRMVGKNEVTYTELL----KLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFV 234
              D M    +      YT L+    KL   ++ L+ VHE+    ++    ++++  + +
Sbjct: 252 RLFDEMKENGLQPTAKIYTTLMGIYFKLGKVEEALNLVHEM---RMRRCVPTVYTYTELI 308

Query: 235 WSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRW 294
               +   ++ AY   ++M+                     + D+ +             
Sbjct: 309 RGLGKSGRVEDAYGVYKNMLK-----------------DGCKPDVVL------------- 338

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGL-RNGMEVLKI 353
             +++I+  GR+     A +L  +M+ L   P+  TY+  I+++  D+         L+ 
Sbjct: 339 -MNNLINILGRSDRLKEAVELFEEMRLLNCTPNVVTYNTIIKSLFEDKAPPSEASSWLER 397

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPER 413
           M+++ + P   T + L     K   ++ A  LL+++     P   +A+ +  +++ K +R
Sbjct: 398 MKKDGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINSLGKAKR 457

Query: 414 ---AIKIFAKMRQKL-RPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
              A ++F ++++      +R Y ++   FG      E   +F+++   K++  I    A
Sbjct: 458 YEAANELFQELKENCGSSSVRVYAVMIKHFGKCGRFNEAMGLFNEM---KKLGCIPDVYA 514

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAM 529
            N +    +    + +A     + R + +  C+        ++N +L+ L       RAM
Sbjct: 515 YNALITGMVRADMMDEAFS---LFRTMEENGCNPDIN----SHNIILNGLARTGGPKRAM 567

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
           E+F +MK+  I P+A +YN ++ C S    F+ A+ L+  M   GF    +TY+++++ +
Sbjct: 568 EMFAKMKSSTIKPDAVSYNTVLGCLSRAGLFEEATKLMKEMNSKGFEYDLITYSSILEAV 627

Query: 590 LDYGDFDEALNLLD 603
              G  DE  N+ +
Sbjct: 628 ---GKVDEDRNMAE 638



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 88/419 (21%), Positives = 160/419 (38%), Gaps = 57/419 (13%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM- 354
            S+++   GR +    A  +  Q++    +P++ TY+  I  ++ +       E+   M 
Sbjct: 163 LSEIVKILGRVKMVNKALSIFYQVKGRKCRPTAGTYNSVILMLMQEGHHEKVHELYNEMC 222

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRC---TNPKPFSAFLAACDTMDKP 411
            + +  P   T + L     K    D A  L D++         K ++  +     + K 
Sbjct: 223 SEGHCFPDTVTYSALISAFGKLNRDDSAVRLFDEMKENGLQPTAKIYTTLMGIYFKLGKV 282

Query: 412 ERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           E A+ +  +MR ++  P + TY  L    G             +V+ A     +  +M +
Sbjct: 283 EEALNLVHEMRMRRCVPTVYTYTELIRGLGKS----------GRVEDAY---GVYKNMLK 329

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQ-ESH 526
           +  +   + M NL+  LG    ++E ++ F + +    TP   TYNT++ SL E +    
Sbjct: 330 DGCKPDVVLMNNLINILGRSDRLKEAVELFEEMRLLNCTPNVVTYNTIIKSLFEDKAPPS 389

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYP--------- 577
            A    ++MK  G+ P++ TY+I+ID        + A  L+  M   GF P         
Sbjct: 390 EASSWLERMKKDGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLI 449

Query: 578 --------------------------QTMTYTALIKILLDYGDFDEALNLLDLVSLEGIP 611
                                         Y  +IK     G F+EA+ L + +   G  
Sbjct: 450 NSLGKAKRYEAANELFQELKENCGSSSVRVYAVMIKHFGKCGRFNEAMGLFNEMKKLGCI 509

Query: 612 HDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAME 670
            DV  YN ++        +D    +   M +N   PD ++ + + +G    G    AME
Sbjct: 510 PDVYAYNALITGMVRADMMDEAFSLFRTMEENGCNPDINSHNIILNGLARTGGPKRAME 568



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 77/389 (19%), Positives = 152/389 (39%), Gaps = 25/389 (6%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           ++S +I A G+      A +L  +M+  GLQP++  Y   +        +   + ++  M
Sbjct: 233 TYSALISAFGKLNRDDSAVRLFDEMKENGLQPTAKIYTTLMGIYFKLGKVEEALNLVHEM 292

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDK 410
           +     P   T   L     K+  ++ A  +   + +    KP     +  +      D+
Sbjct: 293 RMRRCVPTVYTYTELIRGLGKSGRVEDAYGVYKNMLK-DGCKPDVVLMNNLINILGRSDR 351

Query: 411 PERAIKIFAKMRQ-KLRPDIRTYELLF-SLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
            + A+++F +MR     P++ TY  +  SLF +   P E  +   +             M
Sbjct: 352 LKEAVELFEEMRLLNCTPNVVTYNTIIKSLFEDKAPPSEASSWLER-------------M 398

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQES 525
            ++ +  S  +   L+        + +   L++   +   P     Y ++++SL +A+  
Sbjct: 399 KKDGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINSLGKAKRY 458

Query: 526 HRAMEIFKQMK-TCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
             A E+F+++K  CG   +   Y +MI        F  A  L + M + G  P    Y A
Sbjct: 459 EAANELFQELKENCG-SSSVRVYAVMIKHFGKCGRFNEAMGLFNEMKKLGCIPDVYAYNA 517

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
           LI  ++     DEA +L   +   G   D+  +N IL      G       +  +M  + 
Sbjct: 518 LITGMVRADMMDEAFSLFRTMEENGCNPDINSHNIILNGLARTGGPKRAMEMFAKMKSST 577

Query: 645 VQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           ++PD  + + V       G    A + ++
Sbjct: 578 IKPDAVSYNTVLGCLSRAGLFEEATKLMK 606



 Score = 52.8 bits (125), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 83/198 (41%), Gaps = 4/198 (2%)

Query: 470 RNNIQHSHISMKNLLKALGAEGMIREL---IQYFCDSKTPLGTPTYNTVLHSLVEAQESH 526
           + N +H   +   L++ L    ++ EL   IQ    S   +G    + ++  L   +  +
Sbjct: 118 KRNFEHDSTTYMALIRCLDENRLVGELWRTIQDMVKSPCAIGPSELSEIVKILGRVKMVN 177

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGF-YPQTMTYTAL 585
           +A+ IF Q+K     P A TYN +I         +    L + M  +G  +P T+TY+AL
Sbjct: 178 KALSIFYQVKGRKCRPTAGTYNSVILMLMQEGHHEKVHELYNEMCSEGHCFPDTVTYSAL 237

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           I         D A+ L D +   G+     +Y T++    + G+++    ++ +M   + 
Sbjct: 238 ISAFGKLNRDDSAVRLFDEMKENGLQPTAKIYTTLMGIYFKLGKVEEALNLVHEMRMRRC 297

Query: 646 QPDPSTCHFVFSGYVNCG 663
            P   T   +  G    G
Sbjct: 298 VPTVYTYTELIRGLGKSG 315


>gi|356523854|ref|XP_003530549.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g16890, mitochondrial-like [Glycine max]
          Length = 678

 Score = 79.3 bits (194), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 89/192 (46%), Gaps = 3/192 (1%)

Query: 467 DMARNNIQHSHISMKNLLKALGAEGMI---RELIQYFCDSKTPLGTPTYNTVLHSLVEAQ 523
           DM    +  + ++   L+     +G I   R+L++   ++       T+++++  L + +
Sbjct: 454 DMQVRGVVPNLVTFNTLINGHCKDGAIDKARKLLESLLENGLKPDIFTFSSIVDGLCQIK 513

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
            +  A+E F +M   GI PNA  YNI+I     I     +  L+  M ++G  P T +Y 
Sbjct: 514 RTEEALECFTEMIEWGINPNAVIYNILIRSLCTIGDVARSVKLLRRMQKEGISPDTYSYN 573

Query: 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
           ALI+I       ++A  L D +S  G+  D   Y+  ++   E GR++  + +   M  N
Sbjct: 574 ALIQIFCRMNKVEKAKKLFDSMSRSGLNPDNYTYSAFIEALSESGRLEEAKKMFYSMEAN 633

Query: 644 KVQPDPSTCHFV 655
              PD   C+ +
Sbjct: 634 GCSPDSYICNLI 645



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 70/369 (18%), Positives = 139/369 (37%), Gaps = 27/369 (7%)

Query: 304 GRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQD 363
           GR   +  +  +  Q+  LGL P++  Y+  I A+V    +       + M  +N     
Sbjct: 155 GRLGLANYSAHVFCQISFLGLSPTTRLYNALIDALVKSNSIDLAYLKFQQMAADNCVADR 214

Query: 364 STIATLSVECSKALELDLAEALLDQI---SRCTNPKPFSAFLAACDTMDKPERAIKIFAK 420
            T  TL     K   +D A  L+ Q+       N   ++  +       + + A  +F  
Sbjct: 215 FTYNTLIHGVCKVGVVDEALRLVRQMKDKGHFPNVFTYTMLIEGFCIASRVDEAFGVFET 274

Query: 421 MRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQ---HS 476
           M+   + P+  T   L               +F  VD +K +  +   + R   Q   H 
Sbjct: 275 MKDSGVYPNEATVRALVH------------GVFRCVDPSKALELLSEFLDREQEQERVHF 322

Query: 477 HISMKNLLKALGAEGMIRELIQYF----CDSKTPLGTPTYNTVLHSLVEAQESHRAMEIF 532
            ++   +L  L    M +E++ +            G   +N V+  LV+  E     ++F
Sbjct: 323 MLACDTVLYCLANNSMAKEMVVFLRRVLGRGGYFPGNSVFNVVMACLVKGAELRETCDVF 382

Query: 533 KQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDY 592
           + ++  G+      Y  +I+        +    +   ++ DG      +Y  +I      
Sbjct: 383 EILRKQGVKAGIGAYLALIEVLYKNEWREEGDRVYGQLISDGLISNVFSYNMIINCFCRA 442

Query: 593 GDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTC 652
              D A      + + G+  +++ +NT++   C+ G ID    ++E + +N ++PD    
Sbjct: 443 KLMDNASEAFRDMQVRGVVPNLVTFNTLINGHCKDGAIDKARKLLESLLENGLKPDI--- 499

Query: 653 HFVFSGYVN 661
            F FS  V+
Sbjct: 500 -FTFSSIVD 507



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 65/134 (48%)

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           YN ++ SL    +  R++++ ++M+  GI P+  +YN +I     +   + A  L   M 
Sbjct: 537 YNILIRSLCTIGDVARSVKLLRRMQKEGISPDTYSYNALIQIFCRMNKVEKAKKLFDSMS 596

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
           R G  P   TY+A I+ L + G  +EA  +   +   G   D  + N I+K   ++  ++
Sbjct: 597 RSGLNPDNYTYSAFIEALSESGRLEEAKKMFYSMEANGCSPDSYICNLIIKILVQQEYVE 656

Query: 632 VIEFIIEQMHQNKV 645
             + IIE+  Q  +
Sbjct: 657 EAQNIIERCRQKGI 670



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 57/142 (40%)

Query: 531 IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590
           +F Q+   G+ P    YN +ID          A      M  D       TY  LI  + 
Sbjct: 166 VFCQISFLGLSPTTRLYNALIDALVKSNSIDLAYLKFQQMAADNCVADRFTYNTLIHGVC 225

Query: 591 DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650
             G  DEAL L+  +  +G   +V  Y  +++  C   R+D    + E M  + V P+ +
Sbjct: 226 KVGVVDEALRLVRQMKDKGHFPNVFTYTMLIEGFCIASRVDEAFGVFETMKDSGVYPNEA 285

Query: 651 TCHFVFSGYVNCGFHNSAMEAL 672
           T   +  G   C   + A+E L
Sbjct: 286 TVRALVHGVFRCVDPSKALELL 307



 Score = 46.6 bits (109), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 65/298 (21%), Positives = 116/298 (38%), Gaps = 51/298 (17%)

Query: 318 QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKAL 377
           Q+ S GL  +  +Y+  I      + + N  E  + MQ   + P   T  TL     K  
Sbjct: 419 QLISDGLISNVFSYNMIINCFCRAKLMDNASEAFRDMQVRGVVPNLVTFNTLINGHCKDG 478

Query: 378 ELDLAEALLDQISRCTNPKP----FSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTY 432
            +D A  LL+ +      KP    FS+ +     + + E A++ F +M +  + P+   Y
Sbjct: 479 AIDKARKLLESLLE-NGLKPDIFTFSSIVDGLCQIKRTEEALECFTEMIEWGINPNAVIY 537

Query: 433 ELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGM 492
            +L      +                        D+AR        S+K LL+ +  EG+
Sbjct: 538 NILIRSLCTIG-----------------------DVAR--------SVK-LLRRMQKEGI 565

Query: 493 IRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID 552
                       +P  T +YN ++       +  +A ++F  M   G+ P+  TY+  I+
Sbjct: 566 ------------SP-DTYSYNALIQIFCRMNKVEKAKKLFDSMSRSGLNPDNYTYSAFIE 612

Query: 553 CCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGI 610
             S     + A  +   M  +G  P +     +IKIL+     +EA N+++    +GI
Sbjct: 613 ALSESGRLEEAKKMFYSMEANGCSPDSYICNLIIKILVQQEYVEEAQNIIERCRQKGI 670


>gi|255538538|ref|XP_002510334.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223551035|gb|EEF52521.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 947

 Score = 79.3 bits (194), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 115/545 (21%), Positives = 203/545 (37%), Gaps = 49/545 (8%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y  +M   C+ G + +A + +Y    R GI   +  +NS L    ++ +   A     LM
Sbjct: 397 YSTLMDGFCREGLVTKAIS-VYNEMLRVGIQSNVVTHNSLLKGLCRVGAFEDALHVWHLM 455

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYSLSIFSLRKFVWSFTRLRDL 243
             R V  +EV+Y  LL L            +W D + + Y  S ++    +  F ++  +
Sbjct: 456 LKRGVTPDEVSYCTLLDLLFKMGEFFRALALWNDILARGYGRSTYAFNTMINGFCKMEKM 515

Query: 244 KSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHAC 303
             A ET   M  L         RT                               +I   
Sbjct: 516 IEAEETFNRMKELGFEPDGVTYRT-------------------------------LIDGY 544

Query: 304 GRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQD 363
            +  N   A ++  +M+   + PS   Y+  I  +   +  R  M++L  M    L P  
Sbjct: 545 CKLGNVEEAFKVKEKMEKEAILPSIELYNSLIGGLFKSKKTREVMDLLSEMCLKGLSPNV 604

Query: 364 STIATLSVECSKALELDLA-EALLDQISRCTNPKPF--SAFLAACDTMDKPERAIKIFAK 420
            T  TL         LD A  A  D I +   P     S  +++   + + + A  +  K
Sbjct: 605 VTYGTLIAGWCDEGRLDKAFTAYFDMIEKGFAPNVIICSKIVSSLYRLGRIDEANMLLQK 664

Query: 421 MRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISM 480
           M   +  D+      F          ++GN+ SQ   A  ++      +  N    +I++
Sbjct: 665 M---VNLDVFLDHGYFDRLHKA----DDGNLDSQ-KIADTLDESSKSFSLPNSVVYNIAI 716

Query: 481 KNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGI 540
             L K+   +   +          +P    TY T++H    A   + A  +  +M   G+
Sbjct: 717 AGLCKSGKVDDAKKIFSSLLLRGFSP-DNFTYCTLIHGYSAAGNVNDAFSLRDEMLKRGL 775

Query: 541 PPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALN 600
            PN  TYN +I+          A  L   +   G  P  ++Y  LI      G+  EAL+
Sbjct: 776 APNIITYNALINGLCKSGNLDRAQKLFDKLHLKGLAPNVISYNILIDGYCKNGNTREALD 835

Query: 601 LLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFV--FSG 658
           L + +  EGI   ++ Y+ ++   C++G +     ++++M +  +  D +   FV    G
Sbjct: 836 LRNKMLKEGISPSLITYSALIYGFCKQGDMGKATNLLDEMRE--LFADQNIAKFVKLVEG 893

Query: 659 YVNCG 663
           +V CG
Sbjct: 894 HVKCG 898



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 117/607 (19%), Positives = 225/607 (37%), Gaps = 95/607 (15%)

Query: 127 LMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDS 186
           +M+ A CK G++  A + +  + +  G    +  YNS +  C  +  M  A + L LM  
Sbjct: 223 IMVNAYCKDGWVNVAVDFVKEM-DYLGFELNVVTYNSLIDGCVSIGDMERAEMVLKLMGE 281

Query: 187 RMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSI--FSLRKFVWSFTRLRDLK 244
           R + +N+VT T L+K    Q  L    ++  +  +   + +  ++    +  + R+  + 
Sbjct: 282 RGILRNKVTLTLLIKGYCRQCKLEEAEKVLREMERSEGMVLDEYAYGVLIDGYCRVCKMD 341

Query: 245 SAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACG 304
            A                        RLR   L++ + +N            + +I+   
Sbjct: 342 DAV-----------------------RLRDEMLNVGLRMNLFIC--------NALINGYC 370

Query: 305 RTQNSGLAEQLMLQMQSLGLQPSSHTY----DGFIRAIVSDRGLRNGMEVLKIMQQNNLK 360
           +      AE+L+++M    L+P S++Y    DGF R  +  + +    E+L++  Q+N+ 
Sbjct: 371 KNGQVSEAERLLMRMVDWDLEPESYSYSTLMDGFCREGLVTKAISVYNEMLRVGIQSNVV 430

Query: 361 PQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAK 420
             +S +  L   C      D        + R   P   S     C  +D       +  K
Sbjct: 431 THNSLLKGL---CRVGAFEDALHVWHLMLKRGVTPDEVS----YCTLLD-------LLFK 476

Query: 421 MRQKLRPDIRTYELLFSLFGNVNAPYEEG-NMFSQVDSAKRINAIEMDMARNNIQHSHIS 479
           M +  R      ++L   +G     +    N F +++           M     +   ++
Sbjct: 477 MGEFFRALALWNDILARGYGRSTYAFNTMINGFCKMEKMIEAEETFNRMKELGFEPDGVT 536

Query: 480 MKNLLKALGAEGMIRELIQYFCDSKTPLGTPT---YNTVLHSLVEAQESHRAMEIFKQMK 536
            + L+      G + E  +     +     P+   YN+++  L +++++   M++  +M 
Sbjct: 537 YRTLIDGYCKLGNVEEAFKVKEKMEKEAILPSIELYNSLIGGLFKSKKTREVMDLLSEMC 596

Query: 537 TCGIPPNAATYNIMI-DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDF 595
             G+ PN  TY  +I   C   R  K+ +A    M+  GF P  +  + ++  L   G  
Sbjct: 597 LKGLSPNVVTYGTLIAGWCDEGRLDKAFTAYFD-MIEKGFAPNVIICSKIVSSLYRLGRI 655

Query: 596 DEALNLLD-LVSLE-----------------------------------GIPHDVLLYNT 619
           DEA  LL  +V+L+                                    +P+ V +YN 
Sbjct: 656 DEANMLLQKMVNLDVFLDHGYFDRLHKADDGNLDSQKIADTLDESSKSFSLPNSV-VYNI 714

Query: 620 ILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRM 679
            +   C+ G++D  + I   +      PD  T   +  GY   G  N A      +  R 
Sbjct: 715 AIAGLCKSGKVDDAKKIFSSLLLRGFSPDNFTYCTLIHGYSAAGNVNDAFSLRDEMLKRG 774

Query: 680 LCEEVST 686
           L   + T
Sbjct: 775 LAPNIIT 781



 Score = 56.2 bits (134), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 79/166 (47%), Gaps = 5/166 (3%)

Query: 483 LLKALGAEGMIRELIQYFCDSKTPLG-TPTY---NTVLHSLVEAQESHRAMEIFKQMKTC 538
           +LK    +GMI+  +  F D+   LG  P+    N +L SLV   ES  A+ ++  +   
Sbjct: 154 ILKIYCEKGMIKNALHVF-DNMGKLGCVPSLRSCNRLLSSLVRKGESSNAILVYDHINRL 212

Query: 539 GIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEA 598
           GI P+  T +IM++          A   V  M   GF    +TY +LI   +  GD + A
Sbjct: 213 GIVPDVFTCSIMVNAYCKDGWVNVAVDFVKEMDYLGFELNVVTYNSLIDGCVSIGDMERA 272

Query: 599 LNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
             +L L+   GI  + +    ++K  C + +++  E ++ +M +++
Sbjct: 273 EMVLKLMGERGILRNKVTLTLLIKGYCRQCKLEEAEKVLREMERSE 318



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 78/345 (22%), Positives = 134/345 (38%), Gaps = 18/345 (5%)

Query: 108 ETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGA 167
           ET+  M+E     +   Y  ++   CK G +EEA  +   + E+  I P + +YNS +G 
Sbjct: 520 ETFNRMKELGFEPDGVTYRTLIDGYCKLGNVEEAFKVKEKM-EKEAILPSIELYNSLIGG 578

Query: 168 CAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYSLS 226
             K          L  M  + +  N VTY  L+     +  L      + D I K ++ +
Sbjct: 579 LFKSKKTREVMDLLSEMCLKGLSPNVVTYGTLIAGWCDEGRLDKAFTAYFDMIEKGFAPN 638

Query: 227 IFSLRKFVWSFTRLRDLKSAYETLQHMVAL-AMMGKLYINR---TSEGRLRSSR----LD 278
           +    K V S  RL  +  A   LQ MV L   +   Y +R     +G L S +    LD
Sbjct: 639 VIICSKIVSSLYRLGRIDEANMLLQKMVNLDVFLDHGYFDRLHKADDGNLDSQKIADTLD 698

Query: 279 IPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAI 338
                 +LP   V   + + +  + G+  +   A+++   +   G  P + TY   I   
Sbjct: 699 ESSKSFSLPNSVVYNIAIAGLCKS-GKVDD---AKKIFSSLLLRGFSPDNFTYCTLIHGY 754

Query: 339 VSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI---SRCTNP 395
            +   + +   +   M +  L P   T   L     K+  LD A+ L D++       N 
Sbjct: 755 SAAGNVNDAFSLRDEMLKRGLAPNIITYNALINGLCKSGNLDRAQKLFDKLHLKGLAPNV 814

Query: 396 KPFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLF 439
             ++  +           A+ +  KM ++ + P + TY  L   F
Sbjct: 815 ISYNILIDGYCKNGNTREALDLRNKMLKEGISPSLITYSALIYGF 859


>gi|255546465|ref|XP_002514292.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546748|gb|EEF48246.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 608

 Score = 79.3 bits (194), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 72/382 (18%), Positives = 162/382 (42%), Gaps = 21/382 (5%)

Query: 315 LMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECS 374
           L+ +++  G++P S  Y+  I A      ++  M++ + M+    KP  ST  TL     
Sbjct: 115 LISKVEENGMKPDSILYNAMINAFSESGNVKEAMKIFQKMKDTGCKPTTSTFNTLIKGYG 174

Query: 375 KALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDKPERAIKIFAKM-RQKLRPDI 429
            A + +    +L  +S   + KP    ++  + A  +    E A  +  KM    ++PD+
Sbjct: 175 NAGKPEEGLKMLHLMSLDGSVKPNDRTYNILVRAWCSKKNIEEAWNVLHKMVASGIQPDV 234

Query: 430 RTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGA 489
            TY +L                ++Q     R   + ++M    +  +  +   ++     
Sbjct: 235 VTYNIL-------------ARAYAQKGETLRAEDLILEMQYEKVAPNERTCGIIVNGYCK 281

Query: 490 EGMIRELIQYFCDSKTPLGTPT---YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAAT 546
           EG + E +++    K     P    +N+++   ++  ++    E    M+  G+ P+  T
Sbjct: 282 EGNMIEALRFVYRMKELGVHPNLVIFNSLIKGFLDITDTDGVDEALTLMEEYGVKPDVIT 341

Query: 547 YNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVS 606
           ++ +++  S          + + M + G  P    ++ L K  +  G+ + A ++L  ++
Sbjct: 342 FSTIMNAWSSAGLMDKCQEIFNDMAKAGIEPDIHAFSILAKGYVRAGETENAESVLTSMA 401

Query: 607 LEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHN 666
             G+  +V++  TI+   C  G+++  + + E+M +  + P+  T   +  GY       
Sbjct: 402 KSGVRPNVVICTTIISGWCSAGKMENAKMVYEKMCEIGISPNLKTFETLIWGYAEARQPG 461

Query: 667 SAMEALQVLSMRMLCEEVSTLE 688
            A E LQ++  + +  E ST++
Sbjct: 462 KAEELLQLMEEKGVFPEKSTIQ 483



 Score = 62.8 bits (151), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 75/155 (48%), Gaps = 3/155 (1%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TY T++ +L + +       +  +++  G+ P++  YN MI+  S     K A  +   M
Sbjct: 95  TYTTLVAALTKLKHFESIFLLISKVEENGMKPDSILYNAMINAFSESGNVKEAMKIFQKM 154

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGI--PHDVLLYNTILKKACEKG 628
              G  P T T+  LIK   + G  +E L +L L+SL+G   P+D   YN +++  C K 
Sbjct: 155 KDTGCKPTTSTFNTLIKGYGNAGKPEEGLKMLHLMSLDGSVKPND-RTYNILVRAWCSKK 213

Query: 629 RIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
            I+    ++ +M  + +QPD  T + +   Y   G
Sbjct: 214 NIEEAWNVLHKMVASGIQPDVVTYNILARAYAQKG 248



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 53/115 (46%)

Query: 563 ASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILK 622
           A+ +   +V DG  P  +TYT L+  L     F+    L+  V   G+  D +LYN ++ 
Sbjct: 77  ANLIFDNLVEDGHRPTLITYTTLVAALTKLKHFESIFLLISKVEENGMKPDSILYNAMIN 136

Query: 623 KACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSM 677
              E G +     I ++M     +P  ST + +  GY N G     ++ L ++S+
Sbjct: 137 AFSESGNVKEAMKIFQKMKDTGCKPTTSTFNTLIKGYGNAGKPEEGLKMLHLMSL 191



 Score = 45.1 bits (105), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 46/231 (19%), Positives = 96/231 (41%), Gaps = 22/231 (9%)

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
           M+ +++  N +   +++   CK G + EA   +Y + E  G++P L ++NS +     + 
Sbjct: 260 MQYEKVAPNERTCGIIVNGYCKEGNMIEALRFVYRMKE-LGVHPNLVIFNSLIKGFLDIT 318

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK-HYSLSIFSLR 231
                +  L LM+   V  + +T++ ++        +    EI+ D  K      I +  
Sbjct: 319 DTDGVDEALTLMEEYGVKPDVITFSTIMNAWSSAGLMDKCQEIFNDMAKAGIEPDIHAFS 378

Query: 232 KFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRT------SEGRLRSSRL------DI 279
                + R  + ++A   L  M    +   + I  T      S G++ ++++      +I
Sbjct: 379 ILAKGYVRAGETENAESVLTSMAKSGVRPNVVICTTIISGWCSAGKMENAKMVYEKMCEI 438

Query: 280 PIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHT 330
            I  N L   + L W +++        +  G AE+L+  M+  G+ P   T
Sbjct: 439 GISPN-LKTFETLIWGYAEA-------RQPGKAEELLQLMEEKGVFPEKST 481


>gi|449499490|ref|XP_004160831.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Cucumis sativus]
          Length = 1000

 Score = 79.3 bits (194), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 80/334 (23%), Positives = 128/334 (38%), Gaps = 22/334 (6%)

Query: 326 PSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEAL 385
           P++  Y+  I  +         M+ L  M+  +  P   T   L   C    +L   + +
Sbjct: 306 PNTILYNKMISGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRILLCGCLNKKQLGRCKRI 365

Query: 386 LDQ-ISRCTNPK--PFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFS---- 437
           L   I+    P    F++ + A    D    A K+  KM + + +P    Y +L      
Sbjct: 366 LSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILIGSICS 425

Query: 438 ---LFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIR 494
              L G V     E      + +   +N + +           +S    L   G      
Sbjct: 426 GGELPGPVTFELAEKAYNEMLSAGTVLNKVNV-----------VSFARCLCGFGKFEKAY 474

Query: 495 ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCC 554
           ++I     +     T TY+ V+  L  A     A  +FK+MK  G+ P+  TY I+IDC 
Sbjct: 475 KVIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCF 534

Query: 555 SIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDV 614
           S     K A   +  MVRDG  P  +TYT LI   L       A  L +L+  +G   +V
Sbjct: 535 SKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNV 594

Query: 615 LLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
           + Y  ++   C+ G I+    I  +M  +   PD
Sbjct: 595 ITYTALIDGYCKSGNIEKACQIYARMRGDADIPD 628



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 130/572 (22%), Positives = 232/572 (40%), Gaps = 55/572 (9%)

Query: 114 EEKEIGLNNKCYLL--MMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKL 171
           E  E+GL+   + L    QALCK G   EA +LI    E+    P   +YN  +    + 
Sbjct: 266 EMSELGLSMDEFTLGFFAQALCKVGKWREALSLI----EKEDFVPNTILYNKMISGLCEA 321

Query: 172 HSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK---HYSLSIF 228
                A   L+ M S     N  TY  LL   + +K L     I    I    + S +IF
Sbjct: 322 SFFEEAMDFLNRMRSTSCIPNVQTYRILLCGCLNKKQLGRCKRILSMMIAEGCYPSYTIF 381

Query: 229 SLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIP------ 282
           +    V ++ +  D   AY+ L+ M          +     G + S   ++P P      
Sbjct: 382 N--SLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILIGSICSGG-ELPGPVTFELA 438

Query: 283 -------LNALPVM-KVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGF 334
                  L+A  V+ KV   SF+  +   G+ +    A +++ +M   G  P + TY   
Sbjct: 439 EKAYNEMLSAGTVLNKVNVVSFARCLCGFGKFEK---AYKVIHEMMGNGFVPDTSTYSEV 495

Query: 335 IRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVEC-SKALELDLAEALLDQISRCT 393
           I  + +   + N   + K M+   + P D    T+ ++C SKA  +  A   LD++ R  
Sbjct: 496 IGFLCNASRVENAFFLFKEMKGTGVVP-DVYTYTILIDCFSKAGIIKQAHNWLDEMVR-D 553

Query: 394 NPKP----FSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEE 448
             +P    ++  + A     K   A ++F  M  K   P++ TY  L   +       + 
Sbjct: 554 GCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDGYCKSGNIEKA 613

Query: 449 GNMFSQVDSAKRINAIEMDMA-RNNI--QHSHISMKNLLKALGAEGMIRE----LIQYFC 501
             +++++     I  ++M    +NN+  + + ++   L+  L     +++    L   F 
Sbjct: 614 CQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCKAHKVKDARDLLETMFV 673

Query: 502 DSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFK 561
           D   P  T  Y+ ++    +A +   A E+F +M   G  PN  TY+ +ID     R FK
Sbjct: 674 DGCEP-NTIVYDALIDGFCKAAKLDEAQEVFHKMVERGYNPNVYTYSSLID-----RLFK 727

Query: 562 SAS-----ALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLL 616
                    ++S M+ +   P  + YT +I  L      DEA  L+ ++  +G   +V+ 
Sbjct: 728 DKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVT 787

Query: 617 YNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
           Y  ++    + G++D    +  +M      P+
Sbjct: 788 YTAMIDGFGKAGKVDKCLELFREMGSKGCAPN 819



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 79/402 (19%), Positives = 157/402 (39%), Gaps = 41/402 (10%)

Query: 302 ACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKP 361
            C   +  G  ++++  M + G  PS   ++  + A           ++LK M++   KP
Sbjct: 352 GCLNKKQLGRCKRILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKP 411

Query: 362 QDSTIATL------SVECSKALELDLAEALLDQI---SRCTNPKPFSAFLAACDTMDKPE 412
                  L        E    +  +LAE   +++       N     +F        K E
Sbjct: 412 GYVVYNILIGSICSGGELPGPVTFELAEKAYNEMLSAGTVLNKVNVVSFARCLCGFGKFE 471

Query: 413 RAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471
           +A K+  +M      PD  TY  +     N +       +F ++        +  D+   
Sbjct: 472 KAYKVIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKG----TGVVPDVYTY 527

Query: 472 NIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEI 531
            I     S   ++K   A   + E+++  C+        TY T++H+ ++A++   A E+
Sbjct: 528 TILIDCFSKAGIIKQ--AHNWLDEMVRDGCEPTVV----TYTTLIHAYLKAKKVSVANEL 581

Query: 532 FKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDG------FY--------- 576
           F+ M   G  PN  TY  +ID        + A  + + M  D        Y         
Sbjct: 582 FELMIAKGCFPNVITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAE 641

Query: 577 -PQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEF 635
            P  +TY AL+  L       +A +LL+ + ++G   + ++Y+ ++   C+  ++D  + 
Sbjct: 642 KPNVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQE 701

Query: 636 IIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAME-ALQVLS 676
           +  +M +    P+  T    +S  ++  F +  ++  L+VLS
Sbjct: 702 VFHKMVERGYNPNVYT----YSSLIDRLFKDKRLDLVLKVLS 739



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 76/362 (20%), Positives = 152/362 (41%), Gaps = 40/362 (11%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ +IHA  + +   +A +L   M + G  P+  TY   I        +    ++   M
Sbjct: 561 TYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDGYCKSGNIEKACQIYARM 620

Query: 355 Q--------------QNNL--KPQDSTIATLSVECSKALELDLAEALLDQ--ISRC-TNP 395
           +              +NN+  KP   T   L     KA ++  A  LL+   +  C  N 
Sbjct: 621 RGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNT 680

Query: 396 KPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYE-LLFSLFGNVNAPYEEGNMFS 453
             + A +       K + A ++F KM ++   P++ TY  L+  LF +            
Sbjct: 681 IVYDALIDGFCKAAKLDEAQEVFHKMVERGYNPNVYTYSSLIDRLFKD-----------K 729

Query: 454 QVDSAKRI--NAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPT 511
           ++D   ++    +E   A N + ++   M + L  +       +L+    +        T
Sbjct: 730 RLDLVLKVLSKMLENSCAPNIVIYTE--MIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVT 787

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           Y  ++    +A +  + +E+F++M + G  PN  TY ++I+ C        A AL+  M 
Sbjct: 788 YTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTVLINHCCATGHLDEAYALLEEM- 846

Query: 572 RDGFYPQTMTYTALIKILLDYG-DFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           +  ++P+ ++  +  K++  Y  +F  +L LL+ V   G    +LLY  ++    + GR+
Sbjct: 847 KQTYWPKHVS--SYCKVIEGYKREFILSLGLLEEVEKNGSAPTILLYKVLIDNFVKAGRL 904

Query: 631 DV 632
           +V
Sbjct: 905 EV 906



 Score = 57.0 bits (136), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/180 (21%), Positives = 71/180 (39%)

Query: 451 MFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP 510
           +F + D       +  +M+   +     ++    +AL   G  RE +           T 
Sbjct: 250 VFLRADKLDTAQLVHREMSELGLSMDEFTLGFFAQALCKVGKWREALSLIEKEDFVPNTI 309

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
            YN ++  L EA     AM+   +M++    PN  TY I++  C   +       ++SMM
Sbjct: 310 LYNKMISGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRILLCGCLNKKQLGRCKRILSMM 369

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           + +G YP    + +L+       DF  A  LL  +         ++YN ++   C  G +
Sbjct: 370 IAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILIGSICSGGEL 429



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 77/422 (18%), Positives = 153/422 (36%), Gaps = 93/422 (22%)

Query: 299 VIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNN 358
           +I  C R     +A + + +++  G +P+  TY+  ++  +    L     V + M +  
Sbjct: 212 LIRKCCRNGLWNVALEELGRLKDFGYKPTRMTYNALVQVFLRADKLDTAQLVHREMSELG 271

Query: 359 LKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIF 418
           L   + T+   +    K  +   A +L+++     N   ++  ++        E A+   
Sbjct: 272 LSMDEFTLGFFAQALCKVGKWREALSLIEKEDFVPNTILYNKMISGLCEASFFEEAMDFL 331

Query: 419 AKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSH 477
            +MR     P+++TY +L  L G +N          Q+   KRI                
Sbjct: 332 NRMRSTSCIPNVQTYRIL--LCGCLNK--------KQLGRCKRI---------------- 365

Query: 478 ISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTY---NTVLHSLVEAQESHRAMEIFKQ 534
                 L  + AEG                  P+Y   N+++H+  ++ +   A ++ K+
Sbjct: 366 ------LSMMIAEGCY----------------PSYTIFNSLVHAYCKSDDFSYAYKLLKK 403

Query: 535 MKTCGIPPNAATYNIMI-----------------------------------DCCSIIRC 559
           M+ C   P    YNI+I                                   +  S  RC
Sbjct: 404 MEKCECKPGYVVYNILIGSICSGGELPGPVTFELAEKAYNEMLSAGTVLNKVNVVSFARC 463

Query: 560 ------FKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHD 613
                 F+ A  ++  M+ +GF P T TY+ +I  L +    + A  L   +   G+  D
Sbjct: 464 LCGFGKFEKAYKVIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPD 523

Query: 614 VLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           V  Y  ++    + G I      +++M ++  +P   T   +   Y+     + A E  +
Sbjct: 524 VYTYTILIDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFE 583

Query: 674 VL 675
           ++
Sbjct: 584 LM 585



 Score = 46.6 bits (109), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 70/329 (21%), Positives = 124/329 (37%), Gaps = 71/329 (21%)

Query: 236 SFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRL-RSSRLDIPIPLNALPVMKVLRW 294
            F +   L  A E    MV       +Y   +   RL +  RLD+ + +    + K+L  
Sbjct: 689 GFCKAAKLDEAQEVFHKMVERGYNPNVYTYSSLIDRLFKDKRLDLVLKV----LSKMLEN 744

Query: 295 S-------FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTY----DGFIRAIVSDRG 343
           S       ++++I    +   +  A +LML M+  G +P+  TY    DGF +A   D+ 
Sbjct: 745 SCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKC 804

Query: 344 LRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLA 403
           L    E+ + M      P   T   L   C     LD A ALL+++ +   PK  S++  
Sbjct: 805 L----ELFREMGSKGCAPNFVTYTVLINHCCATGHLDEAYALLEEMKQTYWPKHVSSY-- 858

Query: 404 ACDTMDKPERAIKIFAKMRQKLR-----PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSA 458
            C  ++  +R   +   + +++      P I  Y++L   F               V + 
Sbjct: 859 -CKVIEGYKREFILSLGLLEEVEKNGSAPTILLYKVLIDNF---------------VKAG 902

Query: 459 KRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHS 518
           +   A+E+     +   S  + KNL                            Y ++++S
Sbjct: 903 RLEVALELHKEVISASMSMTAKKNL----------------------------YTSLIYS 934

Query: 519 LVEAQESHRAMEIFKQMKTCGIPPNAATY 547
              A +   A E+F  M   G+ P+  T+
Sbjct: 935 FSYASKIDHAFELFYDMIRDGVIPDLGTF 963


>gi|302795973|ref|XP_002979749.1| hypothetical protein SELMODRAFT_111428 [Selaginella moellendorffii]
 gi|300152509|gb|EFJ19151.1| hypothetical protein SELMODRAFT_111428 [Selaginella moellendorffii]
          Length = 388

 Score = 79.3 bits (194), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 73/346 (21%), Positives = 138/346 (39%), Gaps = 27/346 (7%)

Query: 323 GLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLA 382
            + P+   ++  +        L   +  L++M++    P + T  TL     K    D A
Sbjct: 6   AVAPNVVIFNSVVNGFARAGHLDGALGTLRMMRKAGCNPDEVTYNTLIDVFHKLERFDSA 65

Query: 383 EALLDQ---------ISRCTNPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTY 432
             LL+Q         +   T     ++F   C+      +A  I   M     +PD+ TY
Sbjct: 66  RELLEQMWDSGIRPGVMAETYNNVIASFCEVCNV----RKAKGILELMIDSGCKPDVVTY 121

Query: 433 ELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGM 492
             L S    +    +   +  +++ A   N I  +   N +  S        K   A+ +
Sbjct: 122 NTLISGLCKLRRADDALQLMREMEPAP--NTITYNTVINGLWRSR-------KDTEAQAL 172

Query: 493 IRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID 552
           + E+I   C    P    TYN V+ +L  ++E  +A+++F  M+      +  T+  ++D
Sbjct: 173 LDEMISVGC----PFSVSTYNCVIANLCRSREMEKAVDVFLYMRKKKCEADEVTFATLVD 228

Query: 553 CCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPH 612
                +  + A   +  M R G      +YT L+  L D G   +A  + +L+   G   
Sbjct: 229 GFLRDKRLEDAGGTLDWMARAGIPSDVKSYTKLLNALCDRGSAQKACEIFNLMVDRGYAP 288

Query: 613 DVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
            ++ YN +LK  C+  R++    +  +M + ++QPD  +   V  G
Sbjct: 289 TLVSYNVLLKGLCKALRVEHALVLFREMQEREIQPDVVSYTTVIKG 334



 Score = 55.8 bits (133), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 69/169 (40%), Gaps = 5/169 (2%)

Query: 494 RELIQYFCDSKTPLGT--PTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI 551
           REL++   DS    G    TYN V+ S  E     +A  I + M   G  P+  TYN +I
Sbjct: 66  RELLEQMWDSGIRPGVMAETYNNVIASFCEVCNVRKAKGILELMIDSGCKPDVVTYNTLI 125

Query: 552 DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIP 611
                +R    A  L+  M      P T+TY  +I  L       EA  LLD +   G P
Sbjct: 126 SGLCKLRRADDALQLMREMEP---APNTITYNTVINGLWRSRKDTEAQALLDEMISVGCP 182

Query: 612 HDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYV 660
             V  YN ++   C    ++    +   M + K + D  T   +  G++
Sbjct: 183 FSVSTYNCVIANLCRSREMEKAVDVFLYMRKKKCEADEVTFATLVDGFL 231



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 81/352 (23%), Positives = 142/352 (40%), Gaps = 24/352 (6%)

Query: 298 DVIHACGRTQNSGLAEQLMLQMQSLGLQPS--SHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           DV H   R  +   A +L+ QM   G++P   + TY+  I +      +R    +L++M 
Sbjct: 54  DVFHKLERFDS---ARELLEQMWDSGIRPGVMAETYNNVIASFCEVCNVRKAKGILELMI 110

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAI 415
            +  KP   T  TL     K    D A  L+ ++    N   ++  +       K   A 
Sbjct: 111 DSGCKPDVVTYNTLISGLCKLRRADDALQLMREMEPAPNTITYNTVINGLWRSRKDTEAQ 170

Query: 416 KIFAKMRQKLRP-DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQ 474
            +  +M     P  + TY  + +         +  ++F  +   K+  A E+  A   + 
Sbjct: 171 ALLDEMISVGCPFSVSTYNCVIANLCRSREMEKAVDVFLYM-RKKKCEADEVTFA--TLV 227

Query: 475 HSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQ 534
              +  K L  A G        + +   +  P    +Y  +L++L +   + +A EIF  
Sbjct: 228 DGFLRDKRLEDAGGT-------LDWMARAGIPSDVKSYTKLLNALCDRGSAQKACEIFNL 280

Query: 535 MKTCGIPPNAATYNIMI-DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYG 593
           M   G  P   +YN+++   C  +R  + A  L   M      P  ++YT +IK L    
Sbjct: 281 MVDRGYAPTLVSYNVLLKGLCKALR-VEHALVLFREMQEREIQPDVVSYTTVIKGLCAAR 339

Query: 594 DFDEALNLL-DLVSLEGIPHDVLLYNTILKKACEK-GRIDVIEFIIEQMHQN 643
             DEA++L  D   LE  P+D+   +  L+   EK GR++    +  +  QN
Sbjct: 340 RIDEAIDLFRDPSFLE--PNDIT--HETLRIGLEKSGRLEDYSSVTGRKDQN 387



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 79/364 (21%), Positives = 149/364 (40%), Gaps = 33/364 (9%)

Query: 153 GIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELL----KLAVWQKN 208
            + P + ++NS +   A+   +  A   L +M       +EVTY  L+    KL  +   
Sbjct: 6   AVAPNVVIFNSVVNGFARAGHLDGALGTLRMMRKAGCNPDEVTYNTLIDVFHKLERFDSA 65

Query: 209 LSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYI-NRT 267
              + ++W+  I+   ++  +    + SF  + +++ A   L+ M+       +   N  
Sbjct: 66  RELLEQMWDSGIRPGVMA-ETYNNVIASFCEVCNVRKAKGILELMIDSGCKPDVVTYNTL 124

Query: 268 SEGRLRSSRLDIPIPLNALPVMKVLR-----WSFSDVIHACGRTQNSGLAEQLMLQMQSL 322
             G  +  R D     +AL +M+ +       +++ VI+   R++    A+ L+ +M S+
Sbjct: 125 ISGLCKLRRAD-----DALQLMREMEPAPNTITYNTVINGLWRSRKDTEAQALLDEMISV 179

Query: 323 GLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLA 382
           G   S  TY+  I  +   R +   ++V   M++   +  + T ATL     +   L+ A
Sbjct: 180 GCPFSVSTYNCVIANLCRSREMEKAVDVFLYMRKKKCEADEVTFATLVDGFLRDKRLEDA 239

Query: 383 EALLDQISRCTNP---KPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSL 438
              LD ++R   P   K ++  L A       ++A +IF  M  +   P + +Y +L  L
Sbjct: 240 GGTLDWMARAGIPSDVKSYTKLLNALCDRGSAQKACEIFNLMVDRGYAPTLVSYNVL--L 297

Query: 439 FGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQ 498
            G   A   E  +            +  +M    IQ   +S   ++K L A   I E I 
Sbjct: 298 KGLCKALRVEHAL-----------VLFREMQEREIQPDVVSYTTVIKGLCAARRIDEAID 346

Query: 499 YFCD 502
            F D
Sbjct: 347 LFRD 350



 Score = 47.0 bits (110), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 62/139 (44%), Gaps = 5/139 (3%)

Query: 539 GIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEA 598
            + PN   +N +++  +       A   + MM + G  P  +TY  LI +      FD A
Sbjct: 6   AVAPNVVIFNSVVNGFARAGHLDGALGTLRMMRKAGCNPDEVTYNTLIDVFHKLERFDSA 65

Query: 599 LNLLDLVSLEGIPHDVL--LYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVF 656
             LL+ +   GI   V+   YN ++   CE   +   + I+E M  +  +PD  T + + 
Sbjct: 66  RELLEQMWDSGIRPGVMAETYNNVIASFCEVCNVRKAKGILELMIDSGCKPDVVTYNTLI 125

Query: 657 SGYVNCGFHNSAMEALQVL 675
           SG   C     A +ALQ++
Sbjct: 126 SGL--CKLRR-ADDALQLM 141


>gi|428671933|gb|EKX72848.1| pentatricopeptide repeat domain containing protein [Babesia equi]
          Length = 1104

 Score = 79.3 bits (194), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 68/334 (20%), Positives = 145/334 (43%), Gaps = 23/334 (6%)

Query: 335 IRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALE----LDLAEALLDQIS 390
           IR  ++     + M+ +K + +  L  Q+  I+ L  + S  L+    L+      ++IS
Sbjct: 635 IRVCLASGNFTSAMQFIKPLLR--LNQQNVEISQLIQQVSSKLDSRSKLESFLTFCEKIS 692

Query: 391 RCTNPKPFSAFLAACDTMDKPERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEG 449
              +   FS  L  C  +   +R +++  K R   L+P  +TY ++           E  
Sbjct: 693 ILVDENAFSCILDCCLKLKNSKRLLRLINKFRLWGLQPQAQTYGVIIKSLSCCGMIDECN 752

Query: 450 NMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCD----SKT 505
            ++ +             + +   + + ++   +  A      + + ++ F D     K 
Sbjct: 753 RLWDEF------------VNKRGFEPNEVTYGCMFDAYVNNNRVDDAVRLFEDMKSQGKV 800

Query: 506 PLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASA 565
              T  Y T++    + ++  +A+++F  M +  +  N  TYN +ID C+ +     A++
Sbjct: 801 KPNTIMYTTLIKGYGQNKQLDKALKMFNMMCSENVAANTVTYNSIIDACARVGDMNGAAS 860

Query: 566 LVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKAC 625
           L+  M+ +   P  +T++ +IK      + D++  LL ++   GI  DV+LYN++L+   
Sbjct: 861 LLEDMLNNNIEPDLITFSTIIKGYCVQSNMDKSFQLLSIMYERGIMPDVILYNSLLEGCV 920

Query: 626 EKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
           + G + + E + +QM Q  + P   T   +   Y
Sbjct: 921 KSGLLWLCEKLWQQMQQYGIPPSNFTLTILIKMY 954



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 74/178 (41%), Gaps = 6/178 (3%)

Query: 511 TYNTVLHSLV---EAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALV 567
           TY  ++ SL       E +R  + F   +  G  PN  TY  M D          A  L 
Sbjct: 734 TYGVIIKSLSCCGMIDECNRLWDEFVNKR--GFEPNEVTYGCMFDAYVNNNRVDDAVRLF 791

Query: 568 SMMVRDG-FYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE 626
             M   G   P T+ YT LIK        D+AL + +++  E +  + + YN+I+     
Sbjct: 792 EDMKSQGKVKPNTIMYTTLIKGYGQNKQLDKALKMFNMMCSENVAANTVTYNSIIDACAR 851

Query: 627 KGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEV 684
            G ++    ++E M  N ++PD  T   +  GY      + + + L ++  R +  +V
Sbjct: 852 VGDMNGAASLLEDMLNNNIEPDLITFSTIIKGYCVQSNMDKSFQLLSIMYERGIMPDV 909



 Score = 52.8 bits (125), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 69/388 (17%), Positives = 149/388 (38%), Gaps = 53/388 (13%)

Query: 295  SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
            +FS ++  C + +NS    +L+ + +  GLQP + TY   I+++                
Sbjct: 699  AFSCILDCCLKLKNSKRLLRLINKFRLWGLQPQAQTYGVIIKSL---------------- 742

Query: 355  QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERA 414
                      +   +  EC++     L +  +++     N   +     A    ++ + A
Sbjct: 743  ----------SCCGMIDECNR-----LWDEFVNKRGFEPNEVTYGCMFDAYVNNNRVDDA 787

Query: 415  IKIFAKMRQ--KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNN 472
            +++F  M+   K++P+   Y  L   +G             Q+D A ++  +   M   N
Sbjct: 788  VRLFEDMKSQGKVKPNTIMYTTLIKGYGQNK----------QLDKALKMFNM---MCSEN 834

Query: 473  IQHSHISMKNLLKALGAEGMIR---ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAM 529
            +  + ++  +++ A    G +     L++   ++       T++T++          ++ 
Sbjct: 835  VAANTVTYNSIIDACARVGDMNGAASLLEDMLNNNIEPDLITFSTIIKGYCVQSNMDKSF 894

Query: 530  EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
            ++   M   GI P+   YN +++ C           L   M + G  P   T T LIK+ 
Sbjct: 895  QLLSIMYERGIMPDVILYNSLLEGCVKSGLLWLCEKLWQQMQQYGIPPSNFTLTILIKMY 954

Query: 590  LDYGDFDEALNLLDLVSLE-GIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
               G  D+   L D +  + G   +  +Y  ++      GR  +I  + + M    ++ D
Sbjct: 955  GRNGQLDKVFELADTLPKQYGFTINTHVYTCLMSACITNGRYSMILEVYKCMKSAGIKAD 1014

Query: 649  PSTCHFVFSGYVNCGFHNSAMEALQVLS 676
              T   +  G    G +   +EA  ++S
Sbjct: 1015 AKTFETLIQGASKGGLY---LEAADIIS 1039


>gi|302773712|ref|XP_002970273.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
 gi|300161789|gb|EFJ28403.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
          Length = 831

 Score = 79.3 bits (194), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 82/374 (21%), Positives = 145/374 (38%), Gaps = 52/374 (13%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           AE+  L++    +QPSS T    I+ +     + + + +L+ M +    P  +T + L  
Sbjct: 358 AEEACLEIAGRNIQPSSGTCHSVIQELCKAGRVDSALSLLETMIKRGYCPDMATHSMLIN 417

Query: 372 ECSKALELDLAEALLDQISR-----CTNPKPFSAFLAACDTMDKPERAIKIFAKM--RQK 424
           E  KA ++  A+  L  + R      ++   +++ L +     K  +A  IF+ M   + 
Sbjct: 418 ELCKADKIQEAQEFLQGMDRKISSRSSSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERS 477

Query: 425 LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLL 484
             PD+ +Y +L              + F ++D   R                        
Sbjct: 478 FVPDVVSYSILI-------------DGFCKIDELGR------------------------ 500

Query: 485 KALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNA 544
               AE + +++I   C    P    TYN  L+ L+       A  ++++M   G  P+ 
Sbjct: 501 ----AEKLYKQMIDLNC---VP-NVTTYNAFLNGLMRKGRIADAQGVYEEMVAAGCSPDV 552

Query: 545 ATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDL 604
            TY+ +I   S+ R    A  L   M+  G  P  +TY  L+  L      DEA  L   
Sbjct: 553 ITYSTLIHGFSLARKHDQAHELFETMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRK 612

Query: 605 VSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGF 664
           +   G   D + Y T+L   C  G+I+    + ++M      PD    + +  G+   G 
Sbjct: 613 MVERGCDPDRVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGK 672

Query: 665 HNSAMEALQVLSMR 678
              A +  QV+  R
Sbjct: 673 PGEAKQLFQVMVSR 686



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 68/262 (25%), Positives = 114/262 (43%), Gaps = 15/262 (5%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           S+S +I    +    G AE+L  QM  L   P+  TY+ F+  ++    + +   V + M
Sbjct: 484 SYSILIDGFCKIDELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEM 543

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPKP--FSAFLAACDTMDKP 411
                 P   T +TL    S A + D A  L +  ISR   P    ++  L       KP
Sbjct: 544 VAAGCSPDVITYSTLIHGFSLARKHDQAHELFETMISRGCRPNAVTYNCLLHGLCKESKP 603

Query: 412 ERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           + A ++F KM ++   PD  TY  L   F NV    +   +F ++ S       + D+  
Sbjct: 604 DEAHELFRKMVERGCDPDRVTYTTLLYGFCNVGKIEQAVEVFDEMVS----KGHDPDVVA 659

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAME 530
            N       +K   +A G  G  ++L Q     +    T ++N ++  L +A+    A+E
Sbjct: 660 YNCL-----LKGFFRA-GKPGEAKQLFQVMVSRQCKPDTVSHNIMIDGLSKAKRLDDAVE 713

Query: 531 IFKQM-KTCGIPPNAATYNIMI 551
           +F++M +  G  P+  TYN +I
Sbjct: 714 VFERMEQDHGCSPDLVTYNSLI 735



 Score = 58.9 bits (141), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 65/294 (22%), Positives = 124/294 (42%), Gaps = 22/294 (7%)

Query: 378 ELDLAEALLDQ---ISRCTNPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYE 433
           EL  AE L  Q   ++   N   ++AFL       +   A  ++ +M      PD+ TY 
Sbjct: 497 ELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMVAAGCSPDVITYS 556

Query: 434 LLFSLFGNVNAPYEEGNMF-SQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGM 492
            L   F       +   +F + +    R NA+      N + H    +    K   A  +
Sbjct: 557 TLIHGFSLARKHDQAHELFETMISRGCRPNAVTY----NCLLHG---LCKESKPDEAHEL 609

Query: 493 IRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID 552
            R++++  CD        TY T+L+      +  +A+E+F +M + G  P+   YN ++ 
Sbjct: 610 FRKMVERGCDPDRV----TYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLK 665

Query: 553 CCSIIRCFKSASA--LVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLE-G 609
                R  K   A  L  +MV     P T+++  +I  L      D+A+ + + +  + G
Sbjct: 666 --GFFRAGKPGEAKQLFQVMVSRQCKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHG 723

Query: 610 IPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
              D++ YN+++   C + R+     + +++ + K+ PDP   + +    + CG
Sbjct: 724 CSPDLVTYNSLIFGLCGEQRLSEAMKVFKEIDRLKLSPDPHAFNVLLEA-IKCG 776



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 60/277 (21%), Positives = 113/277 (40%), Gaps = 13/277 (4%)

Query: 412 ERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           ++A ++F KM  Q + P+  TY +L       ++ YE  +     D A R     +D   
Sbjct: 146 KQAGQVFEKMVAQGVVPNGFTYAVLVQ-----SSCYERNS-----DEAVRFFGEMVDKGF 195

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAME 530
                 +  +   LKA G EG    +     + +  +       +L + V   ++  A +
Sbjct: 196 KPSSTLYQKVTECLKATGKEGEFSRVFGRDLEKRVAVEMMLKKALLVNFVIQDKAIEASK 255

Query: 531 IFKQMKTCGIPPNAATYNIMIDC-CSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
           +F+ M   G  P+A  Y+ M+   C +    ++    + M V        + +TA +  L
Sbjct: 256 LFRAMVKSGCKPDATIYSYMVLAHCKLENLDEAFKLFLEMAVESKAPLNNVAWTAFLSGL 315

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649
              G  ++A      +  E +     +Y+ +++   E GRID  E    ++    +QP  
Sbjct: 316 CKSGKIEQAFEACRTMQ-ESLSSSQPVYDMLIRLLIESGRIDKAEEACLEIAGRNIQPSS 374

Query: 650 STCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
            TCH V       G  +SA+  L+ +  R  C +++T
Sbjct: 375 GTCHSVIQELCKAGRVDSALSLLETMIKRGYCPDMAT 411



 Score = 57.0 bits (136), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 86/449 (19%), Positives = 171/449 (38%), Gaps = 61/449 (13%)

Query: 128 MMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSR 187
           ++Q LCK G ++ A +L+  + +R G  P +  ++  +    K   +  A   L  MD +
Sbjct: 380 VIQELCKAGRVDSALSLLETMIKR-GYCPDMATHSMLINELCKADKIQEAQEFLQGMDRK 438

Query: 188 MVGKNEVT--YTELLKLAVWQKNLSAVHEIWEDYIKHYSL--SIFSLRKFVWSFTRLRDL 243
           +  ++     Y  LL      K +     I+   +   S    + S    +  F ++ +L
Sbjct: 439 ISSRSSSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSFVPDVVSYSILIDGFCKIDEL 498

Query: 244 KSAYETLQHMVALAMMGKLYI-NRTSEGRLRSSRL-------DIPIPLNALPVMKVLRWS 295
             A +  + M+ L  +  +   N    G +R  R+       +  +     P +     +
Sbjct: 499 GRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMVAAGCSPDV----IT 554

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           +S +IH     +    A +L   M S G +P++ TY+  +  +  +       E+ + M 
Sbjct: 555 YSTLIHGFSLARKHDQAHELFETMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMV 614

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAI 415
           +    P   T  TL                                   C+ + K E+A+
Sbjct: 615 ERGCDPDRVTYTTL-------------------------------LYGFCN-VGKIEQAV 642

Query: 416 KIFAKMRQKLR-PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQ 474
           ++F +M  K   PD+  Y  L   F     P E   +F QV  +++          + + 
Sbjct: 643 EVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEAKQLF-QVMVSRQCKP-------DTVS 694

Query: 475 HSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQ 534
           H +I +  L KA   +  +    +   D        TYN+++  L   Q    AM++FK+
Sbjct: 695 H-NIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVFKE 753

Query: 535 MKTCGIPPNAATYNIMIDC--CSIIRCFK 561
           +    + P+   +N++++   C I+  F+
Sbjct: 754 IDRLKLSPDPHAFNVLLEAIKCGIVYQFE 782



 Score = 48.1 bits (113), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 66/146 (45%), Gaps = 12/146 (8%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TYN +L  L+  ++  +A ++F++M   G+ PN  TY +++      R    A      M
Sbjct: 131 TYNCLLDKLIRHRDLKQAGQVFEKMVAQGVVPNGFTYAVLVQSSCYERNSDEAVRFFGEM 190

Query: 571 VRDGFYPQTMTY---TALIKILLDYGDFDEAL--NLLDLVSLEGIPHDVLLYNTILK-KA 624
           V  GF P +  Y   T  +K     G+F      +L   V++E +    LL N +++ KA
Sbjct: 191 VDKGFKPSSTLYQKVTECLKATGKEGEFSRVFGRDLEKRVAVEMMLKKALLVNFVIQDKA 250

Query: 625 CEKGRIDVIEFIIEQMHQNKVQPDPS 650
            E  +      +   M ++  +PD +
Sbjct: 251 IEASK------LFRAMVKSGCKPDAT 270



 Score = 45.8 bits (107), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 73/359 (20%), Positives = 138/359 (38%), Gaps = 25/359 (6%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A Q+  +M + G+ P+  TY   +++   +R     +     M     KP  ST+     
Sbjct: 148 AGQVFEKMVAQGVVPNGFTYAVLVQSSCYERNSDEAVRFFGEMVDKGFKPS-STLYQKVT 206

Query: 372 ECSKAL--ELDLAEALLDQISRCTNPKPF--SAFLAACDTMDKPERAIKIF-AKMRQKLR 426
           EC KA   E + +      + +    +     A L      DK   A K+F A ++   +
Sbjct: 207 ECLKATGKEGEFSRVFGRDLEKRVAVEMMLKKALLVNFVIQDKAIEASKLFRAMVKSGCK 266

Query: 427 PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKA 486
           PD   Y  +      +    E   +F ++       A+E     NN     ++    L  
Sbjct: 267 PDATIYSYMVLAHCKLENLDEAFKLFLEM-------AVESKAPLNN-----VAWTAFLSG 314

Query: 487 LGAEGMIRELIQYFCDSKTPLGT--PTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNA 544
           L   G I +  +     +  L +  P Y+ ++  L+E+    +A E   ++    I P++
Sbjct: 315 LCKSGKIEQAFEACRTMQESLSSSQPVYDMLIRLLIESGRIDKAEEACLEIAGRNIQPSS 374

Query: 545 AT-YNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLD 603
            T ++++ + C   R   SA +L+  M++ G+ P   T++ LI  L       EA   L 
Sbjct: 375 GTCHSVIQELCKAGR-VDSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQ 433

Query: 604 LV--SLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQM-HQNKVQPDPSTCHFVFSGY 659
            +   +         YN++L   C+  ++     I   M  +    PD  +   +  G+
Sbjct: 434 GMDRKISSRSSSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSFVPDVVSYSILIDGF 492


>gi|134302847|gb|ABO70667.1| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score = 79.3 bits (194), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 94/412 (22%), Positives = 168/412 (40%), Gaps = 34/412 (8%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +F+ ++H          A  L  QM     +P+  T+   +  +  +  +   + +L  M
Sbjct: 151 TFTTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRM 210

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP-FSAFLAACDTMDKPER 413
            ++ L+P   T  T+     K  +   A  LL ++   ++  P    + A  D++ K  R
Sbjct: 211 MEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGR 270

Query: 414 ---AIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
              A  +F +M++K + PD+ TY  +   F + +  + +     Q            +M 
Sbjct: 271 HSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCS-SGRWSDAEQLLQ------------EML 317

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLG----TPTYNTVLHSLVEAQES 525
              I    ++   L+ A   EG   E  + + D   P G    T TY++++    +    
Sbjct: 318 ERKISPDVVTYNALINAFVKEGKFFEAEELY-DEMLPRGIIPNTITYSSMIDGFCKQNRL 376

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
             A  +F  M T G  PN  T+N +ID     +       L+  M   G    T TY  L
Sbjct: 377 DAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTL 436

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI-DVIE-FIIEQMHQ- 642
           I      GD + AL+LL  +   G+  D++  +T+L   C+ G++ D +E F + Q  + 
Sbjct: 437 IHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKK 496

Query: 643 --------NKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
                   N V+PD  T + + SG +N G    A E  + +  R +  +  T
Sbjct: 497 DLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTIT 548



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 126/623 (20%), Positives = 244/623 (39%), Gaps = 54/623 (8%)

Query: 89  DFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFL 148
           DF  ++    R   P  V+  ++ ME K+I  +   + ++++  C    L  A +    +
Sbjct: 81  DFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFNILIKCFCSCSKLPFALSTFGKI 140

Query: 149 GERYGIYPILPVYNSFL-GACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQK 207
             + G++P +  + + L G C +       NL   + ++     N VT+T L+     + 
Sbjct: 141 -TKLGLHPDVVTFTTLLHGLCVEDRVSEALNLFHQMFETT-CRPNVVTFTTLMNGLCREG 198

Query: 208 NL----SAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAY------ETLQHMVALA 257
            +    + +  + ED ++   ++  ++   V    +  D  SA       E + H++   
Sbjct: 199 RIVEAVALLDRMMEDGLQPTQITYGTI---VDGMCKKGDTVSALNLLRKMEEVSHIIPNV 255

Query: 258 MMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLML 317
           ++    I+   +    S   ++   +    +   L    S ++  C   + S  AEQL+ 
Sbjct: 256 VIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSD-AEQLLQ 314

Query: 318 QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKAL 377
           +M    + P   TY+  I A V +       E+   M    + P   T +++     K  
Sbjct: 315 EMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQN 374

Query: 378 ELDLAEAL--LDQISRCT-NPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYE 433
            LD AE +  L     C+ N   F+  +       + +  +++  +M +  L  D  TY 
Sbjct: 375 RLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYN 434

Query: 434 LL---FSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAE 490
            L   F L G++NA  +                +  +M  + +    ++   LL  L   
Sbjct: 435 TLIHGFYLVGDLNAALD----------------LLQEMISSGLCPDIVTCDTLLDGLCDN 478

Query: 491 GMIRELIQYF---------CDSKTPLG-----TPTYNTVLHSLVEAQESHRAMEIFKQMK 536
           G +++ ++ F          D+  P         TYN ++  L+   +   A E++++M 
Sbjct: 479 GKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMP 538

Query: 537 TCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFD 596
             GI P+  TY+ MID          A+ +   M    F P  +T+T LI      G  D
Sbjct: 539 HRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVD 598

Query: 597 EALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVF 656
           + L L   +   GI  + + Y T++    + G I+    I ++M  + V PD  T   + 
Sbjct: 599 DGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNML 658

Query: 657 SGYVNCGFHNSAMEALQVLSMRM 679
           +G  +      A+  L+ L M M
Sbjct: 659 TGLWSKEELKRAVAMLEKLQMSM 681



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 84/431 (19%), Positives = 168/431 (38%), Gaps = 65/431 (15%)

Query: 272 LRSSRLDIPIPLNALPVMKVLR---WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSS 328
           +R  R D+ I L      K +R   +SF+ +I           A     ++  LGL P  
Sbjct: 90  VRMERPDLVISLYQKMERKQIRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDV 149

Query: 329 HTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ 388
            T+   +  +  +  +   + +   M +   +P   T  TL     +   +  A ALLD+
Sbjct: 150 VTFTTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDR 209

Query: 389 ISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEE 448
           +                               M   L+P   TY  +      V+   ++
Sbjct: 210 M-------------------------------MEDGLQPTQITYGTI------VDGMCKK 232

Query: 449 GNMFSQVDSAKRINAIEMDMARNNIQHS-----------HISMKNLLKALGAEGMIRELI 497
           G+  S ++  +++  +   +  N + +S           H   +NL   +  +G+  +L 
Sbjct: 233 GDTVSALNLLRKMEEVS-HIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLF 291

Query: 498 QYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSII 557
                        TYN+++     +     A ++ ++M    I P+  TYN +I+     
Sbjct: 292 -------------TYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKE 338

Query: 558 RCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLY 617
             F  A  L   M+  G  P T+TY+++I         D A ++  L++ +G   +++ +
Sbjct: 339 GKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITF 398

Query: 618 NTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSM 677
           NT++   C   RID    ++ +M +  +  D +T + +  G+   G  N+A++ LQ +  
Sbjct: 399 NTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMIS 458

Query: 678 RMLCEEVSTLE 688
             LC ++ T +
Sbjct: 459 SGLCPDIVTCD 469



 Score = 47.4 bits (111), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 80/170 (47%), Gaps = 12/170 (7%)

Query: 519 LVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC-CSIIRCFKSASALVSM--MVRDGF 575
           +V  +     + ++++M+   I  +  ++NI+I C CS   C K   AL +   + + G 
Sbjct: 89  VVRMERPDLVISLYQKMERKQIRCDIYSFNILIKCFCS---CSKLPFALSTFGKITKLGL 145

Query: 576 YPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEF 635
           +P  +T+T L+  L       EALNL   +       +V+ + T++   C +GRI     
Sbjct: 146 HPDVVTFTTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVA 205

Query: 636 IIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVS 685
           ++++M ++ +QP   T   +  G    G   SA+  L+ +      EEVS
Sbjct: 206 LLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKM------EEVS 249


>gi|297746120|emb|CBI16176.3| unnamed protein product [Vitis vinifera]
          Length = 819

 Score = 79.3 bits (194), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 108/540 (20%), Positives = 199/540 (36%), Gaps = 82/540 (15%)

Query: 153 GIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAV 212
           G+ P + VY + + +  +L   + A   +  M+S     +  TY       V+ + L   
Sbjct: 210 GLRPDVYVYTAVVRSLCELKDFIRAREVIGRMESSGCDLSVATYN------VFIRGLCKN 263

Query: 213 HEIWEDYIKHYSLSIFSLR-------KFVWSFTRLRDLKSAYETLQHMVALAMMGKLYIN 265
             +WE       LS   LR         V    ++ + ++  E +  M+           
Sbjct: 264 QRVWEAVEIKNLLSYKGLRADVGTYCTLVLGLCKVEEFEAGEEMMNEMIEFGF------- 316

Query: 266 RTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQ 325
                          +P  A         + S+++    +  N G A  L+ +++  G+ 
Sbjct: 317 ---------------VPSEA---------AVSNLVDGLRKKGNIGSAFDLVNKVKKFGVA 352

Query: 326 PSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEAL 385
           PS   Y+  I ++  D  L     +   M    L P D T + L     K  +LD+A   
Sbjct: 353 PSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHF 412

Query: 386 LDQISRC---TNPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLF-- 439
           L +++         P+S+ ++    + K   A  +F +M    L+P++  Y  L S +  
Sbjct: 413 LGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCK 472

Query: 440 ---------------GNVNAP--YEEGNMFSQVDSAKRI---NAIEMDMARNNIQHSHIS 479
                          G   +P  Y    + S +  A R+   N +  +M   N+  + ++
Sbjct: 473 EGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVT 532

Query: 480 MKNLLKALGAEG-MIR--ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMK 536
              L++    EG  +R  EL+    +      T TY  ++  L        A E    ++
Sbjct: 533 YNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQ 592

Query: 537 --------TCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
                     G  PN  TY  +I+    I     A  L   M+     P   TY   +  
Sbjct: 593 GEQQKLNEIEGCLPNVVTYTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDY 652

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
           L   G+ ++A+ L D++ LEG   + + YN +++  C+ GRI     ++  M  + + PD
Sbjct: 653 LTSEGNIEKAIQLHDVL-LEGFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPD 711



 Score = 66.6 bits (161), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 78/373 (20%), Positives = 160/373 (42%), Gaps = 24/373 (6%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A +++ +M+S G   S  TY+ FIR +  ++ +   +E+  ++    L+    T  TL +
Sbjct: 234 AREVIGRMESSGCDLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVL 293

Query: 372 ECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPER---AIKIFAKMRQ-KLRP 427
              K  E +  E +++++         +A     D + K      A  +  K+++  + P
Sbjct: 294 GLCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAP 353

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL 487
            +  Y  L      +N+  ++G    ++D A+   ++  +M    +  + ++   L+ + 
Sbjct: 354 SLFVYNAL------INSMCKDG----KLDEAE---SLFNNMGHKGLFPNDVTYSILIDSF 400

Query: 488 GAEGMIRELIQYFCDSKTPLGTPT----YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPN 543
              G + ++  +F    T +G       Y++++    +  +   A  +F +M   G+ PN
Sbjct: 401 CKRGKL-DVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPN 459

Query: 544 AATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL- 602
              Y  +I          +A  L   M   G  P T T+TALI  L       EA  L  
Sbjct: 460 VVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFG 519

Query: 603 DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNC 662
           ++V    IP++V  YN +++  C++G       ++++M +  + PD  T   + SG  + 
Sbjct: 520 EMVEWNVIPNEV-TYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCST 578

Query: 663 GFHNSAMEALQVL 675
           G  + A E +  L
Sbjct: 579 GRVSEAREFMNDL 591



 Score = 66.6 bits (161), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 83/380 (21%), Positives = 155/380 (40%), Gaps = 19/380 (5%)

Query: 289 MKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGM 348
           +K   + +S +I    +      A+ L  +M + GL+P+   Y   I     +  L N  
Sbjct: 421 IKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAF 480

Query: 349 EVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI---SRCTNPKPFSAFLAAC 405
            +   M    + P   T   L      A  +  A  L  ++   +   N   ++  +   
Sbjct: 481 RLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGH 540

Query: 406 DTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDS-AKRINA 463
                  RA ++  +M +K L PD  TY  L S   +     E     + +    +++N 
Sbjct: 541 CKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNE 600

Query: 464 IEMDMARNNIQHSHISMKNLLKALG----AEGMIRELIQYFCDSKTPLGTPTYNTVLHSL 519
           IE  +   N+  ++ ++ N L  +G    AE + RE++     S +     TY   L  L
Sbjct: 601 IEGCLP--NVV-TYTALINGLCKIGLMDKAELLCREMLA----SNSLPNQNTYACFLDYL 653

Query: 520 VEAQESHRAMEIFKQMKTCGIPPNAATYNIMI-DCCSIIRCFKSASALVSMMVRDGFYPQ 578
                  +A+++   +   G   N  TYNI+I   C + R  ++A  LV+ M+  G  P 
Sbjct: 654 TSEGNIEKAIQLHDVLLE-GFLANTVTYNILIRGFCKLGRIQEAAEVLVN-MIDSGISPD 711

Query: 579 TMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIE 638
            ++Y+ +I      GD  EA+ L + +   G+  D + YN ++   C  G +     + +
Sbjct: 712 CISYSTIIYEYCRRGDLKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKAFELRD 771

Query: 639 QMHQNKVQPDPSTCHFVFSG 658
            M +  V+P+ +T + +  G
Sbjct: 772 DMMRRGVKPNRATYNSLIHG 791



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 98/513 (19%), Positives = 187/513 (36%), Gaps = 60/513 (11%)

Query: 128 MMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSR 187
           ++  L K G +  A +L+  + +++G+ P L VYN+ + +  K   +  A    + M  +
Sbjct: 326 LVDGLRKKGNIGSAFDLVNKV-KKFGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHK 384

Query: 188 MVGKNEVTYTELLKLAVWQKNLS-AVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSA 246
            +  N+VTY+ L+     +  L  A+H + +        +++     +    +L  L++A
Sbjct: 385 GLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAA 444

Query: 247 YETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRT 306
                 M+A                            N L    V+  S        G  
Sbjct: 445 KSLFDEMIA----------------------------NGLKPNVVIYTSLISGYCKEGEL 476

Query: 307 QNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTI 366
            N   A +L  +M   G+ P+++T+   I  +     +    ++   M + N+ P + T 
Sbjct: 477 HN---AFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTY 533

Query: 367 ATL-SVECSKALELDLAEALLDQISRCTNP-----KPFSAFLAACDTMDKPERAIKIFAK 420
             L    C +   +   E L + + +   P     +P  + L +   + +    +     
Sbjct: 534 NVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQG 593

Query: 421 MRQKLR------PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQ 474
            +QKL       P++ TY  L              N   ++    +   +  +M  +N  
Sbjct: 594 EQQKLNEIEGCLPNVVTYTALI-------------NGLCKIGLMDKAELLCREMLASNSL 640

Query: 475 HSHISMKNLLKALGAEGMIRELIQY--FCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIF 532
            +  +    L  L +EG I + IQ            T TYN ++    +      A E+ 
Sbjct: 641 PNQNTYACFLDYLTSEGNIEKAIQLHDVLLEGFLANTVTYNILIRGFCKLGRIQEAAEVL 700

Query: 533 KQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDY 592
             M   GI P+  +Y+ +I         K A  L   M+  G  P T+ Y  LI      
Sbjct: 701 VNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVT 760

Query: 593 GDFDEALNLLDLVSLEGIPHDVLLYNTILKKAC 625
           G+  +A  L D +   G+  +   YN+++   C
Sbjct: 761 GELTKAFELRDDMMRRGVKPNRATYNSLIHGTC 793



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 65/143 (45%), Gaps = 5/143 (3%)

Query: 490 EGMIRELIQYF--CDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATY 547
           EG+    +  +  C+  T LG   ++ ++ + V+ +     + + + M  CGI P   T 
Sbjct: 127 EGLFESFLDSYRKCNFSTTLG---FDLLIQTYVQNRRELDGLVVVRLMMDCGILPQIRTL 183

Query: 548 NIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSL 607
           + +++    IR F+ A  L   +V  G  P    YTA+++ L +  DF  A  ++  +  
Sbjct: 184 SGVLNGLIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLCELKDFIRAREVIGRMES 243

Query: 608 EGIPHDVLLYNTILKKACEKGRI 630
            G    V  YN  ++  C+  R+
Sbjct: 244 SGCDLSVATYNVFIRGLCKNQRV 266



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 87/454 (19%), Positives = 173/454 (38%), Gaps = 49/454 (10%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y  ++ ++CK G L+EA +L   +G + G++P    Y+  + +  K   +  A   L  M
Sbjct: 358 YNALINSMCKDGKLDEAESLFNNMGHK-GLFPNDVTYSILIDSFCKRGKLDVALHFLGKM 416

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH-YSLSIFSLRKFVWSFTRLRDL 243
               +      Y+ L+        L A   ++++ I +    ++      +  + +  +L
Sbjct: 417 TEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGEL 476

Query: 244 KSAYETLQHMVALA-----------MMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVL 292
            +A+     M               + G  + NR +E       +   +  N +P     
Sbjct: 477 HNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEM---VEWNVIPN---- 529

Query: 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
             +++ +I    +  N+  A +L+ +M   GL P ++TY   I  + S   +    E + 
Sbjct: 530 EVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMN 589

Query: 353 IMQQNNLK--------PQDSTIATLSVECSKALELDLAEALLDQI---SRCTNPKPFSAF 401
            +Q    K        P   T   L     K   +D AE L  ++   +   N   ++ F
Sbjct: 590 DLQGEQQKLNEIEGCLPNVVTYTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACF 649

Query: 402 LAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI 461
           L    +    E+AI++   + +    +  TY +L                F ++   +  
Sbjct: 650 LDYLTSEGNIEKAIQLHDVLLEGFLANTVTYNILI-------------RGFCKLGRIQEA 696

Query: 462 NAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLG----TPTYNTVLH 517
             + ++M  + I    IS   ++      G ++E I+ + +S    G    T  YN +++
Sbjct: 697 AEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLW-ESMLNRGVNPDTVAYNFLIY 755

Query: 518 SLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI 551
                 E  +A E+   M   G+ PN ATYN +I
Sbjct: 756 GCCVTGELTKAFELRDDMMRRGVKPNRATYNSLI 789


>gi|125557843|gb|EAZ03379.1| hypothetical protein OsI_25524 [Oryza sativa Indica Group]
          Length = 716

 Score = 79.3 bits (194), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 137/661 (20%), Positives = 241/661 (36%), Gaps = 99/661 (14%)

Query: 54  ATQMQIVDALCRGERSRASHL-----LLNL-----GHAHHSLGADDFFHILNYCARSPDP 103
           A + Q+ DAL   +  + S L     L N+     G A +   A  FFH L      PD 
Sbjct: 91  AREGQVADALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMACKFFHELKAQGLKPDD 150

Query: 104 L-FVMETWRMMEEKEIGLNNK---------------CYLLMMQALCKGGYLEEASNLIYF 147
           + +    W + +   +G   +                Y  M+      G  E+A  L+  
Sbjct: 151 VSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLER 210

Query: 148 LGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQK 207
           L ER G  P +  +NS L    K   +  A    ++M  +    N  TY  ++ +     
Sbjct: 211 LRER-GCIPSVVSFNSILTCLGKKRKVDEALSLFEVM-KKDAEPNSSTYNIIIDMLCLGG 268

Query: 208 NLSAVHEIWEDYIKHYSL--SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYIN 265
            +   + I  D ++H SL  ++ ++   V    + R L+ AY+  +              
Sbjct: 269 RVEEAYRIL-DEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESA------------ 315

Query: 266 RTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQ 325
                   S R   P  +           ++  +I   G+      A +L  +M   G  
Sbjct: 316 --------SQRGCNPDCV-----------TYCSLIDGLGKKGQVDEAYRLFEKMLDAGHN 356

Query: 326 PSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECS-KALELDLAEA 384
            +   Y   IR         +G +V K + +   KP D T+    ++C  KA E++    
Sbjct: 357 ANPVVYTSLIRNFFIHGRKEDGHKVFKELIRRGCKP-DLTLLNTYMDCVFKAGEVEKGRM 415

Query: 385 LLDQISR---CTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLF- 439
           + + I       + + +S  +       +      IF  M+Q+    D R Y  +   F 
Sbjct: 416 IFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFC 475

Query: 440 --GNVNAPYE----------------EGNMFSQVDSAKRINAIEM---DMARNNIQHSHI 478
             G V+  YE                 G +   +    R++   M   +     I+ + +
Sbjct: 476 KSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVV 535

Query: 479 SMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQM 535
              +L+   G  G I E      +      TP   T+N++L +LV+A+E + A+  F+ M
Sbjct: 536 LYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSM 595

Query: 536 KTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDF 595
           K    PPN  TY+I+I+    ++ +  A      M + G  P  +TYT +I  L   G+ 
Sbjct: 596 KEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNI 655

Query: 596 DEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFV 655
            +A +L +     G   D   +N +++      R       +E       Q   S+C + 
Sbjct: 656 TDAYSLFERFKANGGIPDAASFNALIEGMSNANR------AMEAYQTTVYQLSSSSCSWN 709

Query: 656 F 656
           F
Sbjct: 710 F 710



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 89/428 (20%), Positives = 190/428 (44%), Gaps = 39/428 (9%)

Query: 272 LRSSRLDIPIPLNALPVMKVLRW-----SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQP 326
           +R+ RLD  +   A+ VM+ L++     +++ +I A    +    A +L+ QMQ +G + 
Sbjct: 21  VRARRLDDAVL--AVAVMRRLKFRPAFSAYTVLIGALAEARRPERALELLRQMQEVGYEV 78

Query: 327 SSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVEC-SKALELDLAEAL 385
             H +   +RA+  +  + + + ++  ++ + L+P D  +  + ++C  KA  +D+A   
Sbjct: 79  GVHLFTTLVRALAREGQVADALALVDEVKGSCLEP-DIVLYNVCIDCFGKAGNVDMACKF 137

Query: 386 LDQISRCTNPKP----FSAFLAACDTMDKPERAIKIFAKMR-QKLRPDIRTYELLFSLFG 440
             ++ +    KP    +++ +       +   A ++FA+M  ++  P    Y  +   +G
Sbjct: 138 FHEL-KAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYG 196

Query: 441 NVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYF 500
           +            + + A ++  +E    R  I  S +S  ++L  LG +  + E +  F
Sbjct: 197 SA----------GRFEDAYKL--LERLRERGCIP-SVVSFNSILTCLGKKRKVDEALSLF 243

Query: 501 --CDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIR 558
                     + TYN ++  L        A  I  +M+   + PN  T NIM+D     R
Sbjct: 244 EVMKKDAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKAR 303

Query: 559 CFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYN 618
             + A  +     + G  P  +TY +LI  L   G  DEA  L + +   G   + ++Y 
Sbjct: 304 KLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYT 363

Query: 619 TILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678
           ++++     GR +    + +++ +   +PD +    + + Y++C F     +A +V   R
Sbjct: 364 SLIRNFFIHGRKEDGHKVFKELIRRGCKPDLT----LLNTYMDCVF-----KAGEVEKGR 414

Query: 679 MLCEEVST 686
           M+ E++ +
Sbjct: 415 MIFEDIRS 422



 Score = 67.0 bits (162), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 87/400 (21%), Positives = 159/400 (39%), Gaps = 31/400 (7%)

Query: 298 DVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQN 357
           D++   GR +    A +++ +M+   L P+  T +  +  +   R L    ++ +   Q 
Sbjct: 262 DMLCLGGRVEE---AYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQR 318

Query: 358 NLKPQDSTIATLSVECSKALELDLAEALLDQI---SRCTNPKPFSAFLAACDTMDKPERA 414
              P   T  +L     K  ++D A  L +++       NP  +++ +       + E  
Sbjct: 319 GCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDG 378

Query: 415 IKIFAKM-RQKLRPDI---RTYELLFSLFGNVNAPYEEGNM-FSQVDSAKRINAIEMDMA 469
            K+F ++ R+  +PD+    TY       G V    E+G M F  + S   +        
Sbjct: 379 HKVFKELIRRGCKPDLTLLNTYMDCVFKAGEV----EKGRMIFEDIRSYGFLP------- 427

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKT---PLGTPTYNTVLHSLVEAQESH 526
             +++   I +  L KA    G  RE    F   K     L    YN V+    ++ + H
Sbjct: 428 --DVRSYSILIHGLTKA----GQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVH 481

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
           +A EI ++MK   + P  ATY  ++D  + I     A  L       G     + Y++LI
Sbjct: 482 KAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLI 541

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
                 G  DEA  +L+ +  +G+  +V  +N++L    +   I+      + M + K  
Sbjct: 542 DGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCP 601

Query: 647 PDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           P+  T   + +G      +N A    Q +  + L   V T
Sbjct: 602 PNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVT 641



 Score = 41.6 bits (96), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 30/131 (22%), Positives = 57/131 (43%)

Query: 518 SLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYP 577
           +LV A+    A+     M+     P  + Y ++I   +  R  + A  L+  M   G+  
Sbjct: 19  ALVRARRLDDAVLAVAVMRRLKFRPAFSAYTVLIGALAEARRPERALELLRQMQEVGYEV 78

Query: 578 QTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFII 637
               +T L++ L   G   +AL L+D V    +  D++LYN  +    + G +D+     
Sbjct: 79  GVHLFTTLVRALAREGQVADALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMACKFF 138

Query: 638 EQMHQNKVQPD 648
            ++    ++PD
Sbjct: 139 HELKAQGLKPD 149


>gi|449454285|ref|XP_004144886.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17140-like [Cucumis sativus]
 gi|449472527|ref|XP_004153621.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17140-like [Cucumis sativus]
          Length = 875

 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 84/364 (23%), Positives = 152/364 (41%), Gaps = 21/364 (5%)

Query: 324 LQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAE 383
           ++P ++T++  I A+     L N  EV   M +   KP + ++  L     +A       
Sbjct: 149 VKPQTYTFNLLISALCEMGYLENAREVFDKMSEKGCKPNEFSLGILVRGYCRAGLHSHGI 208

Query: 384 ALLDQISRCTNPKP----FSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSL 438
            LLD++ R +   P    ++  +++     +   A K+  KMR+  L PDI T+    + 
Sbjct: 209 DLLDEM-RSSGALPNRVAYNTVISSLCGEGQTVEAEKLVEKMREVGLSPDIVTFNCRIAA 267

Query: 439 FGNVNAPYEEGNMFS--QVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIREL 496
                   E   +F   Q+D        EM + + N     ++   +L+   +EGM  E 
Sbjct: 268 LCKSGQILEASRIFRDMQIDE-------EMGLPKPNT----VTYNLMLEGFCSEGMFEEA 316

Query: 497 IQYFCDSKTP--LGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCC 554
              F   K    L   +YN  +  LV + +   A  I  +M    I PN  +YNI++   
Sbjct: 317 RAIFDSMKNSETLSLRSYNIWMLGLVRSGKLLEAHLILNEMAEKNIKPNLYSYNILVHGL 376

Query: 555 SIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDV 614
                F  A +++ +M   G  P T+TY+ L+      G   EA  +L  +   G   ++
Sbjct: 377 CKYGMFSDARSILGLMRESGVAPDTVTYSTLLHGYCRRGKILEANYVLREMIQVGCFPNM 436

Query: 615 LLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQV 674
              N +L    ++GR    E +++ M++     D  TC+ + +G    G  + A+E +  
Sbjct: 437 YTCNILLHSLWKEGRASEAEDLLQMMNERGYGLDNVTCNTMINGLCKAGNLDKAIEIVSG 496

Query: 675 LSMR 678
           +  R
Sbjct: 497 MWTR 500



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 117/576 (20%), Positives = 220/576 (38%), Gaps = 67/576 (11%)

Query: 121 NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLC 180
           N   Y  ++ +LC  G   EA  L+  + E  G+ P +  +N  + A  K   ++ A+  
Sbjct: 222 NRVAYNTVISSLCGEGQTVEAEKLVEKMRE-VGLSPDIVTFNCRIAALCKSGQILEASRI 280

Query: 181 L-DLMDSRMVG---KNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWS 236
             D+     +G    N VTY  +L+    +        I++      +LS+ S   ++  
Sbjct: 281 FRDMQIDEEMGLPKPNTVTYNLMLEGFCSEGMFEEARAIFDSMKNSETLSLRSYNIWMLG 340

Query: 237 FTRLRDLKSAYETLQHMVALAMMGKLY-INRTSEGRLRSSRLDIPIPLNALPVMKVLRWS 295
             R   L  A+  L  M    +   LY  N    G  +          +A  ++ ++R S
Sbjct: 341 LVRSGKLLEAHLILNEMAEKNIKPNLYSYNILVHGLCKYGMFS-----DARSILGLMRES 395

Query: 296 --------FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNG 347
                   +S ++H   R      A  ++ +M  +G  P+ +T +  + ++  +      
Sbjct: 396 GVAPDTVTYSTLLHGYCRRGKILEANYVLREMIQVGCFPNMYTCNILLHSLWKEGRASEA 455

Query: 348 MEVLKIMQQNNLKPQDSTIATLSVECSKALELD-------------------LAEALLDQ 388
            ++L++M +      + T  T+     KA  LD                   L  + +D 
Sbjct: 456 EDLLQMMNERGYGLDNVTCNTMINGLCKAGNLDKAIEIVSGMWTRGSASLGNLGNSFIDL 515

Query: 389 ISRCTNPK---PFSAFLAA-----CDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFG 440
                N K   P S   A      C      E   K+   + +KL PD     L+F  F 
Sbjct: 516 FDIRNNGKKCLPDSITYATIIGGLCKVGRVDEAKKKLLEMIGKKLSPD----SLIFDTF- 570

Query: 441 NVNAPYEEGNMFSQVDSAKRINAIEM--DMARNNIQHSHISMKNLLKALGAEGMIRELIQ 498
                     +++     K  +A  +  +M +     S  +  +L++ LG+E  I E+  
Sbjct: 571 ----------IYNYCKQGKLSSAFRVLKEMEKKGCNKSLRTYNSLIQGLGSENQIFEIYG 620

Query: 499 YFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCS 555
              + K     P   TYN ++  L E  +   A  +  +M   GI PN  T+ I+I    
Sbjct: 621 LMDEMKERGIFPNVYTYNNIISCLSEGGKLKDATCLLDEMLQKGISPNIYTFRILIGAFF 680

Query: 556 IIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVL 615
               F +A  L  + +    + +++ Y+ +   LL  G+  +A  L +      +     
Sbjct: 681 KACDFGAAQELFEIALSLCGHKESL-YSFMFNELLAGGETLKAKELFEAALDRSLALKNF 739

Query: 616 LYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
           LY  +++K C+ G++D   FI+ +M   +   DP++
Sbjct: 740 LYRDLIEKLCKDGKLDDASFILHKMMDKQYSFDPAS 775



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 89/395 (22%), Positives = 151/395 (38%), Gaps = 52/395 (13%)

Query: 315 LMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTI-ATLSVEC 373
           L+ +M+S G  P+   Y+  I ++  +       ++++ M++  L P   T    ++  C
Sbjct: 210 LLDEMRSSGALPNRVAYNTVISSLCGEGQTVEAEKLVEKMREVGLSPDIVTFNCRIAALC 269

Query: 374 SKALELDLAEALLD-QISRCTN-PKP----FSAFLAACDTMDKPERAIKIFAKMRQKLRP 427
                L+ +    D QI      PKP    ++  L    +    E A  IF  M+     
Sbjct: 270 KSGQILEASRIFRDMQIDEEMGLPKPNTVTYNLMLEGFCSEGMFEEARAIFDSMKNSETL 329

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINA--IEMDMARNNIQHSHISMKNLLK 485
            +R+Y +                M   V S K + A  I  +MA  NI+ +  S   L+ 
Sbjct: 330 SLRSYNIW---------------MLGLVRSGKLLEAHLILNEMAEKNIKPNLYSYNILVH 374

Query: 486 ALGAEGMI---RELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPP 542
            L   GM    R ++    +S     T TY+T+LH      +   A  + ++M   G  P
Sbjct: 375 GLCKYGMFSDARSILGLMRESGVAPDTVTYSTLLHGYCRRGKILEANYVLREMIQVGCFP 434

Query: 543 NAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNL- 601
           N  T NI++           A  L+ MM   G+    +T   +I  L   G+ D+A+ + 
Sbjct: 435 NMYTCNILLHSLWKEGRASEAEDLLQMMNERGYGLDNVTCNTMINGLCKAGNLDKAIEIV 494

Query: 602 ------------------LDLVSLEG-----IPHDVLLYNTILKKACEKGRIDVIEFIIE 638
                             +DL  +       +P D + Y TI+   C+ GR+D  +  + 
Sbjct: 495 SGMWTRGSASLGNLGNSFIDLFDIRNNGKKCLP-DSITYATIIGGLCKVGRVDEAKKKLL 553

Query: 639 QMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           +M   K+ PD          Y   G  +SA   L+
Sbjct: 554 EMIGKKLSPDSLIFDTFIYNYCKQGKLSSAFRVLK 588



 Score = 55.8 bits (133), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 90/406 (22%), Positives = 169/406 (41%), Gaps = 60/406 (14%)

Query: 293 RWSFSDVIHA-CGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVL 351
           R +++ VI + CG  Q    AE+L+ +M+ +GL P   T++  I A+     +     + 
Sbjct: 223 RVAYNTVISSLCGEGQTVE-AEKLVEKMREVGLSPDIVTFNCRIAALCKSGQILEASRIF 281

Query: 352 KIMQ---QNNLKPQDSTIATLSVE--CSKALELDLAEALLDQI--SRCTNPKPFSAFLAA 404
           + MQ   +  L   ++    L +E  CS+ +  + A A+ D +  S   + + ++ ++  
Sbjct: 282 RDMQIDEEMGLPKPNTVTYNLMLEGFCSEGM-FEEARAIFDSMKNSETLSLRSYNIWMLG 340

Query: 405 CDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINA 463
                K   A  I  +M +K ++P++ +Y +L      V+   + G MFS   S   +  
Sbjct: 341 LVRSGKLLEAHLILNEMAEKNIKPNLYSYNIL------VHGLCKYG-MFSDARSILGL-- 391

Query: 464 IEMDMARNNIQHSHISMKNLL-------KALGAEGMIRELIQYFCDSKTPLGTPTYNTVL 516
               M  + +    ++   LL       K L A  ++RE+IQ  C         T N +L
Sbjct: 392 ----MRESGVAPDTVTYSTLLHGYCRRGKILEANYVLREMIQVGCFPNMY----TCNILL 443

Query: 517 HSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGF- 575
           HSL +   +  A ++ + M   G   +  T N MI+          A  +VS M   G  
Sbjct: 444 HSLWKEGRASEAEDLLQMMNERGYGLDNVTCNTMINGLCKAGNLDKAIEIVSGMWTRGSA 503

Query: 576 ----------------------YPQTMTYTALIKILLDYGDFDEA-LNLLDLVSLEGIPH 612
                                  P ++TY  +I  L   G  DEA   LL+++  +  P 
Sbjct: 504 SLGNLGNSFIDLFDIRNNGKKCLPDSITYATIIGGLCKVGRVDEAKKKLLEMIGKKLSP- 562

Query: 613 DVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
           D L+++T +   C++G++     ++++M +        T + +  G
Sbjct: 563 DSLIFDTFIYNYCKQGKLSSAFRVLKEMEKKGCNKSLRTYNSLIQG 608



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/181 (20%), Positives = 76/181 (41%), Gaps = 5/181 (2%)

Query: 476 SHISMKNLLKALGAEGMIRELIQYF--CDSKTPLGTPT---YNTVLHSLVEAQESHRAME 530
           +H S  +L++ L   G++   I  F     + P   P    YN +    ++       + 
Sbjct: 80  AHPSGFSLVRTLADLGLLENAISQFRSLRDRFPHDPPPISFYNLLFRCSLKESRVDCVIW 139

Query: 531 IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590
           ++K M    + P   T+N++I     +   ++A  +   M   G  P   +   L++   
Sbjct: 140 LYKDMAVARVKPQTYTFNLLISALCEMGYLENAREVFDKMSEKGCKPNEFSLGILVRGYC 199

Query: 591 DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650
             G     ++LLD +   G   + + YNT++   C +G+    E ++E+M +  + PD  
Sbjct: 200 RAGLHSHGIDLLDEMRSSGALPNRVAYNTVISSLCGEGQTVEAEKLVEKMREVGLSPDIV 259

Query: 651 T 651
           T
Sbjct: 260 T 260


>gi|449485877|ref|XP_004157297.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g07740, mitochondrial-like [Cucumis sativus]
          Length = 460

 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 81/369 (21%), Positives = 152/369 (41%), Gaps = 22/369 (5%)

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQIS----RCTNPKPFSAFLAACDTMDK 410
            +   K    + ++L  + +++   +  E +L  +     RC N   F A +        
Sbjct: 73  HEKGFKHHYPSYSSLIYKLARSRRFEAVETILGHLRNRNIRC-NETLFVALIQHYGKAHL 131

Query: 411 PERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
            E+ I++F +M        ++++ +L +   + +   +   +F Q        A EM   
Sbjct: 132 VEKGIELFHQMPSFNCFRTLQSFNVLLNTLVDCDQFSKASEIFQQ--------AYEMGFR 183

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAM 529
            N++ ++ I +K  +K  G E     L     +        TYN+ L  L    E   A+
Sbjct: 184 PNSVSYN-IMIKGWIKKGGWEQAC-NLFDEMLEKGVQPSVVTYNSXLGVLCRKGEMDTAL 241

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
            +FK M   G  PNA TY ++++    I  +K A  L+  M   G   + + Y  L+  L
Sbjct: 242 CLFKNMTEKGHHPNAVTYALLMEGWCFIGKYKEAKKLMFDMEFHGCKLRPVNYGVLMTHL 301

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649
              G+ DE  +LL+ +    +  DV+ YN ++   C++G++     ++ +M      P+ 
Sbjct: 302 GKTGNIDEMESLLNEMKKRRLKPDVVTYNILVNYLCKEGKVGDAYKVLVKMQVGGCDPNA 361

Query: 650 STCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEE------KRSDFEDLILAEDS 703
           +T   +  GY N G  + AM+ L  + M      + T         K  + +D +     
Sbjct: 362 ATYRMMIDGYCNAGDFDGAMKILNAMLMSGHYPHLKTFASLVVGLLKGENNDDYVCFVLE 421

Query: 704 EAESRILQF 712
           E E R L+F
Sbjct: 422 EMEKRQLRF 430


>gi|357502623|ref|XP_003621600.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496615|gb|AES77818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 890

 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 73/155 (47%), Gaps = 1/155 (0%)

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRC-FKSASALVSMMVRDGFYPQTMTYTALI 586
           A+++F+ M + G+ PN  TYN +ID  +     F         M+ +G  P  +TY +L+
Sbjct: 267 AVDLFRSMSSWGVVPNVITYNSIIDAGAKGEVSFDVVVKFYDEMIANGLMPDRLTYNSLL 326

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
            +    G ++ A  LL  +    I  DV  YNT L   C+ G+ID+   + E+M   +V 
Sbjct: 327 SVCASKGMWEMAQKLLSEMDHRCIVPDVFTYNTYLDTLCKAGQIDLARRVFEEMSSKRVW 386

Query: 647 PDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLC 681
           P+  T   +  GY        A+   + + +R +C
Sbjct: 387 PNVVTYSAMMDGYAKANLLEDALNLYEEMKLRSVC 421



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 116/500 (23%), Positives = 210/500 (42%), Gaps = 73/500 (14%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI- 353
           SFS +I A GR      A  L   M S G+ P+  TY+  I A    +G  +   V+K  
Sbjct: 250 SFSAMISAFGRNGRFPDAVDLFRSMSSWGVVPNVITYNSIIDA--GAKGEVSFDVVVKFY 307

Query: 354 --MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQIS-RCTNPKPFSAFLAACDTMDK 410
             M  N L P   T  +L   C+     ++A+ LL ++  RC  P  F+ +    DT+ K
Sbjct: 308 DEMIANGLMPDRLTYNSLLSVCASKGMWEMAQKLLSEMDHRCIVPDVFT-YNTYLDTLCK 366

Query: 411 PER---AIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVD----SAKRIN 462
             +   A ++F +M  K + P++ TY  +   +   N   +  N++ ++        R++
Sbjct: 367 AGQIDLARRVFEEMSSKRVWPNVVTYSAMMDGYAKANLLEDALNLYEEMKLRSVCLDRVS 426

Query: 463 ----------------AIEM--DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSK 504
                           AIE   +M R+ I    ++   LL   G  GM  E+ + F + K
Sbjct: 427 YNTLVGIYEKLGNLDEAIEKCKEMERSGINRDVVTYNALLSGYGKHGMYDEVRRLFEEMK 486

Query: 505 TPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFK 561
                P   TY+T++    + +    AM+++++ K   +  +   Y+ +ID        +
Sbjct: 487 ARNIYPNTLTYSTMIDMYTKGEMFQEAMDVYREFKMARLEIDVVFYSAIIDTLCKNGLME 546

Query: 562 SASALVSMMVRDGFYPQTMTYTALIKI-----LLDYG------DFDEALNLLDLVSLEGI 610
           S+  L+  M+  G  P  +T+ ++I        L+YG        D  +     + ++G 
Sbjct: 547 SSIMLLMAMMEKGIKPNVVTFNSIIDASQQSPTLEYGVNGSSDAIDYPIEQSSPIVIDGA 606

Query: 611 PHDVLLYNTILKK----ACEK---------GRID--VIEFIIEQMHQNKVQPDPSTCHFV 655
             +    + ILK     A EK         GR D   I ++ ++MH+  ++P+  T    
Sbjct: 607 FQNKPGEDRILKMFEQLAAEKAGHLKKNRSGRQDKHCILWLFQKMHELNIKPNVVT---- 662

Query: 656 FSGYVN-CGFHNSAMEALQVL-SMRMLCEEVSTLEEK--RSDFEDLILAEDSEAESRILQ 711
           FS  +N C   NS  +A  +L ++R+   +V  +         E + L+ ++  +  +  
Sbjct: 663 FSAILNACSLCNSYEDASLLLDTLRLFDNQVYGVTNGLLMGYREQVWLSAETLFDELM-- 720

Query: 712 FCEDSNENLAFTAALLQLRW 731
            C D + + AF  AL  + W
Sbjct: 721 -CMDPSTSSAFYNALTDMLW 739



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 68/333 (20%), Positives = 128/333 (38%), Gaps = 19/333 (5%)

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQI---SRCTNPKPFSAFLAACDTMDKP 411
           +QN    +   ++ +     +  E++LA  L ++       +    FSA ++A     + 
Sbjct: 205 KQNGRVDKGKLVSAMIGTLGRLGEINLALGLFERARLEGYGSTVHSFSAMISAFGRNGRF 264

Query: 412 ERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
             A+ +F  M    + P++ TY  +          ++    F              +M  
Sbjct: 265 PDAVDLFRSMSSWGVVPNVITYNSIIDAGAKGEVSFDVVVKFYD------------EMIA 312

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHR 527
           N +    ++  +LL    ++GM     +   +       P   TYNT L +L +A +   
Sbjct: 313 NGLMPDRLTYNSLLSVCASKGMWEMAQKLLSEMDHRCIVPDVFTYNTYLDTLCKAGQIDL 372

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A  +F++M +  + PN  TY+ M+D  +     + A  L   M         ++Y  L+ 
Sbjct: 373 ARRVFEEMSSKRVWPNVVTYSAMMDGYAKANLLEDALNLYEEMKLRSVCLDRVSYNTLVG 432

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
           I    G+ DEA+     +   GI  DV+ YN +L    + G  D +  + E+M    + P
Sbjct: 433 IYEKLGNLDEAIEKCKEMERSGINRDVVTYNALLSGYGKHGMYDEVRRLFEEMKARNIYP 492

Query: 648 DPSTCHFVFSGYVNCGFHNSAMEALQVLSMRML 680
           +  T   +   Y        AM+  +   M  L
Sbjct: 493 NTLTYSTMIDMYTKGEMFQEAMDVYREFKMARL 525


>gi|147784915|emb|CAN72973.1| hypothetical protein VITISV_019486 [Vitis vinifera]
          Length = 550

 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 74/341 (21%), Positives = 142/341 (41%), Gaps = 27/341 (7%)

Query: 344 LRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEAL---LDQISRCTNPKPFSA 400
           L  G EVL  M++  L P      TL   C K  +++  + L   + ++    N   ++ 
Sbjct: 167 LDKGFEVLGQMEEMGLSPNVVVYTTLIDGCCKNGDIERGKQLFYKMGELDVVANQYTYTV 226

Query: 401 FLAACDTMDKPERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAK 459
            +     M   +  I+++ KM+   + P++ TY  +     N                 K
Sbjct: 227 LINGFFKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRCCN---------------DGK 271

Query: 460 RINAIEM--DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNT 514
             NA E+  +M    +  + ++   L+  L  E  + E  +  C  K    +P   +YNT
Sbjct: 272 LNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNT 331

Query: 515 VLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDG 574
           ++          +A  +F QMK+ G  P+ ATYNI+I   S  +     + +V  M   G
Sbjct: 332 LIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREMEARG 391

Query: 575 FYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIE 634
             P  +TYT L+  L+   + ++A  +   +   G+  D+ +Y  ++   C  G +    
Sbjct: 392 LSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEAS 451

Query: 635 FIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
            + + + +  ++P+    + +  GY   G   S+  AL++L
Sbjct: 452 KLFKSLDEMHLKPNDVIYNTMIYGYCKEG---SSYRALRLL 489



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 73/366 (19%), Positives = 154/366 (42%), Gaps = 18/366 (4%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           ++ +I  C +  +    +QL  +M  L +  + +TY   I         ++G+E+ + M+
Sbjct: 189 YTTLIDGCCKNGDIERGKQLFYKMGELDVVANQYTYTVLINGFFKMGLKKDGIELYEKMK 248

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKPE 412
              + P   T  ++   C    +L+ A  L D++       N   ++  +       +  
Sbjct: 249 LTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVL 308

Query: 413 RAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471
            A ++  +M R  L P++ +Y  L   + ++    +  ++F+Q+ S+ +       +A  
Sbjct: 309 EAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQ----SPSLATY 364

Query: 472 NIQHSHIS-MKNLLKALGAEGMIREL-IQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAM 529
           NI  +  S  KN   + G   M+RE+  +    SK      TY  ++ +LV +    +A 
Sbjct: 365 NILIAGFSEAKN---SAGVTDMVREMEARGLSPSKV-----TYTILMDALVRSDNIEKAF 416

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
           +I+  M+  G+  +   Y ++I    ++   K AS L   +      P  + Y  +I   
Sbjct: 417 QIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSLDEMHLKPNDVIYNTMIYGY 476

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649
              G    AL LL  +   G+  +V  YN+ +   C+  +    E +++ M +  ++P  
Sbjct: 477 CKEGSSYRALRLLKEMGENGMVPNVASYNSTIXILCKDEKWTEAEVLLKDMIELGLKPSI 536

Query: 650 STCHFV 655
           S  + +
Sbjct: 537 SIWNMI 542



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 101/520 (19%), Positives = 193/520 (37%), Gaps = 101/520 (19%)

Query: 86  GADDFFHILNYCARSPDPLFVMETWRMMEEKE--IGLNNKCYLLMMQALCKGGYLEEASN 143
           G++ F ++L    +S    F  + WR+  E +  + L+   + +M++  C+ GYL++   
Sbjct: 116 GSNTFNNLLILLIKSN---FFEKAWRVFNETKGNVKLDVYSFGIMIKGCCEVGYLDKGFE 172

Query: 144 LIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELL--- 200
           ++  + E  G+ P + VY + +  C K   +         M    V  N+ TYT L+   
Sbjct: 173 VLGQM-EEMGLSPNVVVYTTLIDGCCKNGDIERGKQLFYKMGELDVVANQYTYTVLINGF 231

Query: 201 -KLAVWQKNLSAVHEIWEDY-IKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAM 258
            K+ + +  +    E++E   +     ++++    +        L +A+E    M    +
Sbjct: 232 FKMGLKKDGI----ELYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRERGV 287

Query: 259 MGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQ 318
              +    T  G L   R             +VL                   AE+LM +
Sbjct: 288 ACNVVTYNTLIGGLCQER-------------RVLE------------------AERLMCR 316

Query: 319 MQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALE 378
           M+  GL P+  +Y+  I    S   L     +   M+ +   P   ++AT ++  +   E
Sbjct: 317 MKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSP---SLATYNILIAGFSE 373

Query: 379 LDLAEALLDQI----SRCTNPKP--FSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRT 431
              +  + D +    +R  +P    ++  + A    D  E+A +I++ M +  L  DI  
Sbjct: 374 AKNSAGVTDMVREMEARGLSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYI 433

Query: 432 YELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEG 491
           Y +L      V    E   +F  +D        EM +  N++                  
Sbjct: 434 YGVLIHGLCVVGDMKEASKLFKSLD--------EMHLKPNDV------------------ 467

Query: 492 MIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI 551
                               YNT+++   +   S+RA+ + K+M   G+ PN A+YN  I
Sbjct: 468 -------------------IYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASYNSTI 508

Query: 552 DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLD 591
                   +  A  L+  M+  G  P    +  + K   D
Sbjct: 509 XILCKDEKWTEAEVLLKDMIELGLKPSISIWNMISKARFD 548



 Score = 41.6 bits (96), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 37/195 (18%), Positives = 83/195 (42%), Gaps = 2/195 (1%)

Query: 492 MIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI 551
           +  EL Q   DS  P     +  ++++ V +Q   +A+    QM   G+ P + T+N ++
Sbjct: 66  LFHELTQPHLDS-FPTHVLIHEAIINAHVRSQLPEQALFYXNQMIGRGLVPGSNTFNNLL 124

Query: 552 DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIP 611
                   F+ A  + +   +        ++  +IK   + G  D+   +L  +   G+ 
Sbjct: 125 ILLIKSNFFEKAWRVFNE-TKGNVKLDVYSFGIMIKGCCEVGYLDKGFEVLGQMEEMGLS 183

Query: 612 HDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEA 671
            +V++Y T++   C+ G I+  + +  +M +  V  +  T   + +G+   G     +E 
Sbjct: 184 PNVVVYTTLIDGCCKNGDIERGKQLFYKMGELDVVANQYTYTVLINGFFKMGLKKDGIEL 243

Query: 672 LQVLSMRMLCEEVST 686
            + + +  +   V T
Sbjct: 244 YEKMKLTGIVPNVYT 258


>gi|302754868|ref|XP_002960858.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
 gi|300171797|gb|EFJ38397.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
          Length = 699

 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 126/643 (19%), Positives = 242/643 (37%), Gaps = 113/643 (17%)

Query: 107 METWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLG 166
           +E +R M  K+   +   Y  ++ ALCK G  +EA  ++  +  + G  P    +++ + 
Sbjct: 112 LEHFRAMA-KDCAPDVMTYTALVHALCKAGKFDEAQGMLREMVAQ-GCAPDTVTFSTLID 169

Query: 167 ACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELL-KLAVWQKNLSAVHEIWEDYI-KHYS 224
              K  S   A   L+ +  R +G ++  +  ++ +L     ++    ++    I K ++
Sbjct: 170 GLCKFGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFT 229

Query: 225 LSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLN 284
            ++      +  F + +DL SAY+ L+ M+    +  ++                     
Sbjct: 230 PTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVF--------------------- 268

Query: 285 ALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGL 344
                     +F+ +I    +    G A+QL+ +M   G  P+  TY   I  +     +
Sbjct: 269 ----------TFTILITGLCKANRVGEAQQLLEKMVMGGCSPNVVTYSTVINGLCKQGQV 318

Query: 345 RNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAA 404
            +  E+ ++M++ N  P    + T ++             L+D + +             
Sbjct: 319 DDAYELFQLMERRNCPPN---VVTHNI-------------LIDGLCK------------- 349

Query: 405 CDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQV--DSAKRI 461
                + E A +++ +MR+    PDI TY  L           E   +F  +        
Sbjct: 350 ---AKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAA 406

Query: 462 NAIEMDMARNNIQHSHISMKNLLKA------LGAEGMIRELIQY------FCDSKT---- 505
           NA+      + + H + ++  +  A      L  +G   +L  Y      +C +      
Sbjct: 407 NAVTY----STLFHGYAALGRMADACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEV 462

Query: 506 ------------PLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC 553
                       P    T + VL  L E   + RA+++F  M   G   +A  YN++++ 
Sbjct: 463 VELVEEMASKGFPPRVNTLSAVLGGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEG 522

Query: 554 CSIIRCFKSASALVSMMV--RD-GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGI 610
            +       A A++  ++  RD  F P +    AL++ L   G  D+A  LL  +S  G 
Sbjct: 523 MARASKHDKALAVLEQVIDKRDRKFNPSSSAVDALVESLCQVGKTDDAKQLLHKMSERGF 582

Query: 611 PHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAME 670
              V  YN +L       R D    + E M      P+ ST + V S   +    + A E
Sbjct: 583 AAAVSSYNRLLSGLSRLQRWDEATQVFEAMVSAGPAPEISTVNVVISWLCSAAKVDDAYE 642

Query: 671 ALQVLSMRMLCEEVST--------LEEKRSDFEDLILAEDSEA 705
            +Q +S    C ++ T         +  R+D    +L E +EA
Sbjct: 643 LVQRMSKLGCCPDIETCNTLIGGYCKSGRADLARKLLEEMTEA 685



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 63/305 (20%), Positives = 119/305 (39%), Gaps = 20/305 (6%)

Query: 361 PQDSTIATLSVECSKALELDLAEALLDQISRCT---NPKPFSAFLAACDTMDKPERAIKI 417
           P   T   L    S A +LD+A  LL+++       N    +  +       +   A++ 
Sbjct: 55  PNKFTYGILIRGFSSAGDLDIAIQLLEEMKSSGFEGNAVVHTTLMKGLCDAGRVVEALEH 114

Query: 418 FAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSH 477
           F  M +   PD+ TY  L      V+A  + G  F +     R      +M         
Sbjct: 115 FRAMAKDCAPDVMTYTAL------VHALCKAGK-FDEAQGMLR------EMVAQGCAPDT 161

Query: 478 ISMKNLLKAL---GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQES-HRAMEIFK 533
           ++   L+  L   G+E     +++             + T++  L     S   A ++  
Sbjct: 162 VTFSTLIDGLCKFGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLG 221

Query: 534 QMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYG 593
            +   G  P    +N++I+     +   SA  L+ +M+  G  P   T+T LI  L    
Sbjct: 222 VVIAKGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKAN 281

Query: 594 DFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCH 653
              EA  LL+ + + G   +V+ Y+T++   C++G++D    + + M +    P+  T +
Sbjct: 282 RVGEAQQLLEKMVMGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHN 341

Query: 654 FVFSG 658
            +  G
Sbjct: 342 ILIDG 346



 Score = 53.5 bits (127), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 76/187 (40%), Gaps = 4/187 (2%)

Query: 495 ELIQYFCD-SKTPLGTPTY--NTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI 551
           EL+  F D +++ +G   +  N  L  L        A+ +F+        PN  TY I+I
Sbjct: 5   ELVLLFFDWARSRVGHNVFSCNCALDMLCRLNRRQEALALFRNAMARICMPNKFTYGILI 64

Query: 552 DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIP 611
              S       A  L+  M   GF    + +T L+K L D G   EAL     ++ +  P
Sbjct: 65  RGFSSAGDLDIAIQLLEEMKSSGFEGNAVVHTTLMKGLCDAGRVVEALEHFRAMAKDCAP 124

Query: 612 HDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEA 671
            DV+ Y  ++   C+ G+ D  + ++ +M      PD  T   +  G    G    A   
Sbjct: 125 -DVMTYTALVHALCKAGKFDEAQGMLREMVAQGCAPDTVTFSTLIDGLCKFGSEEQAFRV 183

Query: 672 LQVLSMR 678
           L+ +  R
Sbjct: 184 LEDVIQR 190


>gi|302794530|ref|XP_002979029.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
 gi|300153347|gb|EFJ19986.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
          Length = 500

 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 75/382 (19%), Positives = 154/382 (40%), Gaps = 55/382 (14%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           +++S +I +  +      + +++ +M + G  P    ++G ++       +    EV + 
Sbjct: 11  FTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQH 70

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNP--KPFSAFLAACDTMDK 410
           M ++  KP + +   L    +K  +LD +  +L + + R   P  + +S+ + A     +
Sbjct: 71  MVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSSLVRALAKARR 130

Query: 411 PERAIKIFAKM-RQKLRPD-IRTYELLFSL--FGNVNAPYEEGNMFSQVDSAKRINAIEM 466
            + A  +F +M R    PD +  YEL+  L   G V             D+++R      
Sbjct: 131 VDHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVK------------DASERF----- 173

Query: 467 DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESH 526
                                      +++ ++ C    P+    YN +LH L  + +  
Sbjct: 174 ---------------------------KQMPKHGCQPNVPV----YNVLLHGLCSSGQLE 202

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
           +A  +F +MK+    P+  TYN ++D     R  +    L   M   G+ P  +T++ LI
Sbjct: 203 QANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEEGCKLFEAMRAAGYVPNVITFSTLI 262

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
             L   G+ ++AL +   +   G   +   Y T++   C   ++     + E+M Q  + 
Sbjct: 263 HGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQARELFEKMTQACIP 322

Query: 647 PDPSTCHFVFSGYVNCGFHNSA 668
           PD    + + +GY   G  + A
Sbjct: 323 PDAVAYNSLIAGYCKRGSMDEA 344



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 96/489 (19%), Positives = 178/489 (36%), Gaps = 53/489 (10%)

Query: 184 MDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK-HYSLSIFSLRKFVWSFTRLRD 242
           M  + +  N  TY+ ++K  V +      +++ E+ +    +  +F+    +  F R  +
Sbjct: 1   MRDKNIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNN 60

Query: 243 LKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHA 302
           ++ A E  QHMV                           P N          S+  +IH 
Sbjct: 61  MEKAREVYQHMVESGYK----------------------PDNV---------SYHILIHG 89

Query: 303 CGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQ 362
             +      + +++ +M   G  PS   Y   +RA+   R + +   +   M +    P 
Sbjct: 90  LAKIGKLDESLKILSEMVMRGQTPSMQAYSSLVRALAKARRVDHASSLFDEMIRGGHHPD 149

Query: 363 DSTIATLSVECSKALELDLAEALLDQISR--CTNPKP-FSAFLAACDTMDKPERAIKIFA 419
                 L +   +A ++  A     Q+ +  C    P ++  L    +  + E+A  +FA
Sbjct: 150 RLMFYELILGLCQAGKVKDASERFKQMPKHGCQPNVPVYNVLLHGLCSSGQLEQANTLFA 209

Query: 420 KMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHI 478
           +M+     PD+ TY  L           E   +F  + +A  +  +             I
Sbjct: 210 EMKSHSCSPDVVTYNTLLDAVCKARRVEEGCKLFEAMRAAGYVPNV-------------I 256

Query: 479 SMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQM 535
           +   L+  L   G + + ++ F         P   TY T++  L  A++  +A E+F++M
Sbjct: 257 TFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQARELFEKM 316

Query: 536 KTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRD-GFYPQTMTYTALIKILLDYGD 594
               IPP+A  YN +I           A  L   M    G  P  +T+  LI      G 
Sbjct: 317 TQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGK 376

Query: 595 FDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHF 654
              A  L+  +  +G+  D   Y  ++       ++D    + +QM + K   DP +C  
Sbjct: 377 LGRANELVAEMGTKGLAADSCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVS 436

Query: 655 VFSGYVNCG 663
              G    G
Sbjct: 437 FVGGLCKTG 445



 Score = 46.2 bits (108), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 65/321 (20%), Positives = 122/321 (38%), Gaps = 17/321 (5%)

Query: 128 MMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSR 187
           ++  LC+ G +++AS     +  ++G  P +PVYN  L        +  AN     M S 
Sbjct: 156 LILGLCQAGKVKDASERFKQM-PKHGCQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSH 214

Query: 188 MVGKNEVTYTELLKLAVWQKNLSAVHEIWEDY-IKHYSLSIFSLRKFVWSFTRLRDLKSA 246
               + VTY  LL      + +    +++E      Y  ++ +    +    R  +L+ A
Sbjct: 215 SCSPDVVTYNTLLDAVCKARRVEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKA 274

Query: 247 YETLQHMVALAMMGKLYINRT-------SEGRLRSSRLDIPIPLNALPVMKVLRWSFSDV 299
            E    M+        Y   T       +E  +++  L   +    +P   V   +++ +
Sbjct: 275 LEVFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQARELFEKMTQACIPPDAV---AYNSL 331

Query: 300 IHACGRTQNSGLAEQLMLQMQ-SLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNN 358
           I    +  +   AE+L  +M    GLQP+  T++  I        L    E++  M    
Sbjct: 332 IAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKG 391

Query: 359 LKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKPERAI 415
           L     T   L    S+A +LD A  +  Q+       +P    +F+         ++A 
Sbjct: 392 LAADSCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQAY 451

Query: 416 KIFAKMRQK-LRPDIRTYELL 435
            +F   R+    P+  T+ +L
Sbjct: 452 AVFEATRKSGAVPNPETFRIL 472



 Score = 41.6 bits (96), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 38/195 (19%), Positives = 78/195 (40%), Gaps = 2/195 (1%)

Query: 59  IVDALCR-GERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKE 117
           ++  LCR GE  +A  +  ++  A        +  +++   R+   +   E +  M +  
Sbjct: 261 LIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQARELFEKMTQAC 320

Query: 118 IGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHA 177
           I  +   Y  ++   CK G ++EA  L   +    G+ P +  +N+ +    KL  +  A
Sbjct: 321 IPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRA 380

Query: 178 NLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYSLSIFSLRKFVWS 236
           N  +  M ++ +  +  TY  L+        L    E+++    K + L   S   FV  
Sbjct: 381 NELVAEMGTKGLAADSCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSFVGG 440

Query: 237 FTRLRDLKSAYETLQ 251
             +  ++  AY   +
Sbjct: 441 LCKTGNIDQAYAVFE 455


>gi|255555231|ref|XP_002518652.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223542033|gb|EEF43577.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 827

 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 94/430 (21%), Positives = 168/430 (39%), Gaps = 67/430 (15%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +F+ ++   G+++    A +++ +M+  G  PS  TY+  I A   D  LR  ME+   M
Sbjct: 325 TFNTLLDVYGKSRRPKEAMEVLKEMEFSGFSPSIVTYNSLISAYARDGLLREAMELKDQM 384

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDK 410
            +  +KP   T  TL     KA   + A  +  ++ R    KP    F+A +       +
Sbjct: 385 VEKGIKPDVFTYTTLLSGFEKAGMDEPAMRIFGEM-RAAGCKPNICTFNALIKMHGNRGR 443

Query: 411 PERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMF----------------- 452
               +K+F ++      PDI T+  L ++FG      E   +F                 
Sbjct: 444 FAEMMKVFEEIEICNCAPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNT 503

Query: 453 -----SQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPL 507
                S+  S ++  A+   M    +     S   +L AL   G+  +  + F + K   
Sbjct: 504 LISAYSRCGSFQQAMAVYKRMLEAGVTPDLSSYNAVLAALARGGLWEQSEKVFAEMKDGR 563

Query: 508 GTP---TYNTVLHSLVEAQESHR----AMEI----------------------------- 531
             P   TY ++LH+   ++E  R    A EI                             
Sbjct: 564 CKPNELTYCSLLHAYANSKEIERMHTLAEEIYSGLTEPVPVLLKTLVLVNSKCDLLMETE 623

Query: 532 --FKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
             F+++K  G  P+ +T N MI      +    A+ +++ M   GF P   TY +L+ + 
Sbjct: 624 HAFEELKKKG-SPDLSTLNAMIAIYGRRQMVAKANEILNFMNESGFSPSLATYNSLMYMH 682

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649
               +F+ +  +L  +  +G+  D++ YNT++   C  GR+     I   M    + PD 
Sbjct: 683 SRSENFERSEEVLKEILAKGLKPDLISYNTVIFAYCRNGRMKDASRIFSYMKTYGLVPDV 742

Query: 650 STCHFVFSGY 659
            T +   + Y
Sbjct: 743 ITYNTFVASY 752



 Score = 75.9 bits (185), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 62/311 (19%), Positives = 123/311 (39%), Gaps = 51/311 (16%)

Query: 398 FSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVD 456
           +++ + A  +  +   A+ +F KM ++  +P + TY ++ +++G +  P+          
Sbjct: 220 YTSLITAYASNGRYRDAVLVFKKMEEEGCKPTLITYNVILNVYGKMGMPWS--------- 270

Query: 457 SAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYN 513
              +I+ +   M  + +     +   L+       +  E  Q F + K    +P   T+N
Sbjct: 271 ---KISGLVHGMKSSGVAPDDYTYNTLISCCRRGSLYEEAAQVFEEMKLSGFSPDKVTFN 327

Query: 514 TVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRD 573
           T+L    +++    AME+ K+M+  G  P+  TYN +I   +     + A  L   MV  
Sbjct: 328 TLLDVYGKSRRPKEAMEVLKEMEFSGFSPSIVTYNSLISAYARDGLLREAMELKDQMVEK 387

Query: 574 GFYPQTMTY-----------------------------------TALIKILLDYGDFDEA 598
           G  P   TY                                    ALIK+  + G F E 
Sbjct: 388 GIKPDVFTYTTLLSGFEKAGMDEPAMRIFGEMRAAGCKPNICTFNALIKMHGNRGRFAEM 447

Query: 599 LNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
           + + + + +     D++ +NT+L    + G    +  + ++M +    P+  T + + S 
Sbjct: 448 MKVFEEIEICNCAPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISA 507

Query: 659 YVNCGFHNSAM 669
           Y  CG    AM
Sbjct: 508 YSRCGSFQQAM 518



 Score = 65.9 bits (159), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 86/210 (40%), Gaps = 4/210 (1%)

Query: 468 MARNNIQHSHISMKNLLKALGAEGM----IRELIQYFCDSKTPLGTPTYNTVLHSLVEAQ 523
           M     + + I+   +L   G  GM    I  L+     S       TYNT++       
Sbjct: 243 MEEEGCKPTLITYNVILNVYGKMGMPWSKISGLVHGMKSSGVAPDDYTYNTLISCCRRGS 302

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
               A ++F++MK  G  P+  T+N ++D     R  K A  ++  M   GF P  +TY 
Sbjct: 303 LYEEAAQVFEEMKLSGFSPDKVTFNTLLDVYGKSRRPKEAMEVLKEMEFSGFSPSIVTYN 362

Query: 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
           +LI      G   EA+ L D +  +GI  DV  Y T+L    + G  +    I  +M   
Sbjct: 363 SLISAYARDGLLREAMELKDQMVEKGIKPDVFTYTTLLSGFEKAGMDEPAMRIFGEMRAA 422

Query: 644 KVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
             +P+  T + +   + N G     M+  +
Sbjct: 423 GCKPNICTFNALIKMHGNRGRFAEMMKVFE 452



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 129/650 (19%), Positives = 254/650 (39%), Gaps = 52/650 (8%)

Query: 66  GERSRASHLLLNLGHAHHSLGADDFFHILNYCA---RSPDPLFVMETWRMMEEKEIGLNN 122
           G+ S AS +L NL      L    +  ++   A   R  D + V   ++ MEE+      
Sbjct: 196 GKVSAASSILNNLRKDGFDLDVYAYTSLITAYASNGRYRDAVLV---FKKMEEEGCKPTL 252

Query: 123 KCYLLMMQALCKGGY-LEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCL 181
             Y +++    K G    + S L++ + +  G+ P    YN+ +  C +      A    
Sbjct: 253 ITYNVILNVYGKMGMPWSKISGLVHGM-KSSGVAPDDYTYNTLISCCRRGSLYEEAAQVF 311

Query: 182 DLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDY-IKHYSLSIFSLRKFVWSFTRL 240
           + M       ++VT+  LL +    +      E+ ++     +S SI +    + ++ R 
Sbjct: 312 EEMKLSGFSPDKVTFNTLLDVYGKSRRPKEAMEVLKEMEFSGFSPSIVTYNSLISAYARD 371

Query: 241 RDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRW------ 294
             L+ A E    MV   +   ++   T       + +D P    A+ +   +R       
Sbjct: 372 GLLREAMELKDQMVEKGIKPDVFTYTTLLSGFEKAGMDEP----AMRIFGEMRAAGCKPN 427

Query: 295 --SFSDVIHACGRTQNSGLAEQLMLQMQSLGL---QPSSHTYDGFIRAIVSDRGLRNGME 349
             +F+ +I   G   N G   ++M   + + +    P   T++  + A+    G+ + + 
Sbjct: 428 ICTFNALIKMHG---NRGRFAEMMKVFEEIEICNCAPDIVTWNTLL-AVFGQNGMDSEVS 483

Query: 350 -VLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNP--KPFSAFLAAC 405
            V K M++    P+  T  TL    S+      A A+  + +     P    ++A LAA 
Sbjct: 484 GVFKEMKRAGFVPERDTFNTLISAYSRCGSFQQAMAVYKRMLEAGVTPDLSSYNAVLAAL 543

Query: 406 DTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAI 464
                 E++ K+FA+M+  + +P+  TY  L   + N                 +R++ +
Sbjct: 544 ARGGLWEQSEKVFAEMKDGRCKPNELTYCSLLHAYANSK-------------EIERMHTL 590

Query: 465 EMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVE 521
             ++     +   + +K L+       ++ E    F + K   G+P   T N ++     
Sbjct: 591 AEEIYSGLTEPVPVLLKTLVLVNSKCDLLMETEHAFEELKKK-GSPDLSTLNAMIAIYGR 649

Query: 522 AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMT 581
            Q   +A EI   M   G  P+ ATYN ++   S    F+ +  ++  ++  G  P  ++
Sbjct: 650 RQMVAKANEILNFMNESGFSPSLATYNSLMYMHSRSENFERSEEVLKEILAKGLKPDLIS 709

Query: 582 YTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMH 641
           Y  +I      G   +A  +   +   G+  DV+ YNT +         +    ++  M 
Sbjct: 710 YNTVIFAYCRNGRMKDASRIFSYMKTYGLVPDVITYNTFVASYAADSLFEDAIGVVRYMI 769

Query: 642 QNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKR 691
           ++  + + +T + +  GY  C     A   + V S+  L   V+  EE R
Sbjct: 770 KHGCKRNQNTYNSIVDGY--CKHSRRADAIMFVSSLNQLDPHVTKEEELR 817


>gi|356497996|ref|XP_003517841.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 600

 Score = 79.0 bits (193), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 86/403 (21%), Positives = 155/403 (38%), Gaps = 26/403 (6%)

Query: 281 IPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVS 340
           + +   P +K     FS V     + ++   A  L+  M  +G++P+ HT +  I  +  
Sbjct: 75  VTMKPFPCVKDFNLLFSIV----AKMKHYTTAISLIKHMSYIGVKPTVHTLNIVINCLCR 130

Query: 341 DRGLRNGMEVLKIMQQNNLKPQDSTIAT----LSVECSKALELDLAEALLDQISRCTNPK 396
                 G  VL +M +  ++P   T  T    L VE + A  +   + L D +   ++  
Sbjct: 131 LSHAVFGFSVLGLMFKIGVEPSIVTFNTIVNGLCVEGNVAQAIRFVDHLKD-MGYESDSY 189

Query: 397 PFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQV 455
              A       +     A+    KM +K    D+  Y  +          +E  N+FSQ 
Sbjct: 190 TCGAITNGLCKVGHSSAALSYLKKMEEKNCNLDVTAYSGVVDGLCKDGMVFEALNLFSQ- 248

Query: 456 DSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TY 512
                       M    IQ    +   L+  L      +E      +       P   T+
Sbjct: 249 ------------MTGKGIQPDLFTYNCLIHGLCNFDRWKEAAPLLANMMRKGIMPDVQTF 296

Query: 513 NTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVR 572
           N +     +     RA  IF  M   GI  +  TY  +I    ++   K A  +  +M+ 
Sbjct: 297 NVIAGRFFKTGMISRAKSIFSFMVHMGIEHDVVTYTSIIGAHCMLNQMKDAMEVFDLMIS 356

Query: 573 DGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDV 632
            G  P  +TYT+LI    +  + ++A+  L  +   G+  +V+ ++T++   C+ G+   
Sbjct: 357 KGCLPNIVTYTSLIHGWCETKNMNKAMYFLGEMVNNGLDPNVVTWSTLIGGVCKAGKPVA 416

Query: 633 IEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
            + +   MH++   P+  TC  +  G   C FH+ AM   + L
Sbjct: 417 AKELFLVMHKHGQLPNLQTCAIILDGLFKCNFHSEAMSLFREL 459



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 77/409 (18%), Positives = 161/409 (39%), Gaps = 61/409 (14%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +F+ +++      N   A + +  ++ +G +  S+T       +         +  LK M
Sbjct: 155 TFNTIVNGLCVEGNVAQAIRFVDHLKDMGYESDSYTCGAITNGLCKVGHSSAALSYLKKM 214

Query: 355 QQNNLKPQDSTIATLSVE--CSKALELDLAEALLDQISRCTNPKPFS--AFLAACDTMDK 410
           ++ N    D T  +  V+  C   +  +          +   P  F+    +      D+
Sbjct: 215 EEKNCN-LDVTAYSGVVDGLCKDGMVFEALNLFSQMTGKGIQPDLFTYNCLIHGLCNFDR 273

Query: 411 PERAIKIFAK-MRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
            + A  + A  MR+ + PD++T+ ++   F      ++ G     +  AK I +  + M 
Sbjct: 274 WKEAAPLLANMMRKGIMPDVQTFNVIAGRF------FKTG----MISRAKSIFSFMVHMG 323

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYF--CDSKTPL-GTPTYNTVLHSLVEAQESH 526
              I+H  ++  +++ A      +++ ++ F    SK  L    TY +++H   E +  +
Sbjct: 324 ---IEHDVVTYTSIIGAHCMLNQMKDAMEVFDLMISKGCLPNIVTYTSLIHGWCETKNMN 380

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASA--LVSMMVRDGFYPQTMTYTA 584
           +AM    +M   G+ PN  T++ +I    + +  K  +A  L  +M + G  P   T   
Sbjct: 381 KAMYFLGEMVNNGLDPNVVTWSTLIG--GVCKAGKPVAAKELFLVMHKHGQLPNLQTCAI 438

Query: 585 LIKILL-----------------------------------DYGDFDEALNLLDLVSLEG 609
           ++  L                                      G  ++AL L   +S +G
Sbjct: 439 ILDGLFKCNFHSEAMSLFRELEKMNWDLNIIIYNIILDGMCSSGKLNDALELFSYLSSKG 498

Query: 610 IPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
           +  DV+ YN ++K  C++G +D  E ++ +M +N   P+  T +    G
Sbjct: 499 VKIDVVTYNIMIKGLCKEGLLDDAEDLLMKMEENGCPPNECTYNVFVQG 547



 Score = 45.1 bits (105), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 31/158 (19%), Positives = 68/158 (43%)

Query: 516 LHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGF 575
           L S+  A+    A++ + +M T    P    +N++    + ++ + +A +L+  M   G 
Sbjct: 55  LDSMRNAKSVDVALDFYHKMVTMKPFPCVKDFNLLFSIVAKMKHYTTAISLIKHMSYIGV 114

Query: 576 YPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEF 635
            P   T   +I  L          ++L L+   G+   ++ +NTI+   C +G +     
Sbjct: 115 KPTVHTLNIVINCLCRLSHAVFGFSVLGLMFKIGVEPSIVTFNTIVNGLCVEGNVAQAIR 174

Query: 636 IIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
            ++ +     + D  TC  + +G    G  ++A+  L+
Sbjct: 175 FVDHLKDMGYESDSYTCGAITNGLCKVGHSSAALSYLK 212



 Score = 44.3 bits (103), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 33/165 (20%), Positives = 65/165 (39%), Gaps = 3/165 (1%)

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           +N +   + + +    A+ + K M   G+ P   T NI+I+C   +       +++ +M 
Sbjct: 86  FNLLFSIVAKMKHYTTAISLIKHMSYIGVKPTVHTLNIVINCLCRLSHAVFGFSVLGLMF 145

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
           + G  P  +T+  ++  L   G+  +A+  +D +   G   D      I    C+ G   
Sbjct: 146 KIGVEPSIVTFNTIVNGLCVEGNVAQAIRFVDHLKDMGYESDSYTCGAITNGLCKVGHSS 205

Query: 632 VIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
                +++M +     D +    V  G    G      EAL + S
Sbjct: 206 AALSYLKKMEEKNCNLDVTAYSGVVDGLCKDGM---VFEALNLFS 247


>gi|225447241|ref|XP_002272784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g73710-like [Vitis vinifera]
          Length = 1008

 Score = 79.0 bits (193), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 77/165 (46%)

Query: 504 KTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSA 563
           + P  T TYNT++    +A     A ++F +M   G+  +  T+N MI  C        A
Sbjct: 340 RKPRLTATYNTLIDLYGKAGRLKDAADVFAEMLKLGVAMDTITFNTMIYTCGSHGHLSEA 399

Query: 564 SALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKK 623
             L++ M   G  P T TY   + +  D G+ D AL     +   G+  DV+ +  +L  
Sbjct: 400 ETLLTEMEERGISPDTKTYNIFLSLYADGGNIDAALKCYRKIREVGLFPDVVTHRAVLHV 459

Query: 624 ACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSA 668
            CE+  +  +E +I +M +++V+ D  +   V   YVN G  + A
Sbjct: 460 LCERNMVGEVETVIAEMKRSRVRVDEHSIPVVIKMYVNEGLLDKA 504



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 93/453 (20%), Positives = 177/453 (39%), Gaps = 32/453 (7%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +F+ +I+ CG   +   AE L+ +M+  G+ P + TY+ F+        +   ++  + +
Sbjct: 382 TFNTMIYTCGSHGHLSEAETLLTEMEERGISPDTKTYNIFLSLYADGGNIDAALKCYRKI 441

Query: 355 QQNNLKPQDST-IATLSVECSKAL----ELDLAEALLDQISRCTNPKPFSAFLAACDTM- 408
           ++  L P   T  A L V C + +    E  +AE    ++    +  P    +   + + 
Sbjct: 442 REVGLFPDVVTHRAVLHVLCERNMVGEVETVIAEMKRSRVRVDEHSIPVVIKMYVNEGLL 501

Query: 409 DKPERAIKIFAKMRQKLRP-DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMD 467
           DK     KIF +          RT   +   +       E  N+F      KR    + D
Sbjct: 502 DKA----KIFLEEHLLEDELSSRTRVAIIDAYAEKGLWAEAENVFI----GKRDLGQKKD 553

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQE 524
           +   N+         ++KA G   +  +    F   +     P   TYN+++        
Sbjct: 554 VVEYNV---------MVKAYGKAKLYDKAFSLFKGMRNHGTWPNESTYNSLIQMFSGGDL 604

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
              A  I  +M+  G  P   T++ +I C + +     A  +   MVR G  P  + Y +
Sbjct: 605 VDEARGILAEMQKMGFKPQCLTFSAVIACYARLGRLPDAVGVYEEMVRLGVKPNEVVYGS 664

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
           LI    + G+ +EAL     +   GI  + ++  +++K   + G ++  + + E M   +
Sbjct: 665 LINGFSETGNVEEALCYFRKMDEFGISANQIVLTSLIKAYSKVGCLEGAKTLYEGMKDLE 724

Query: 645 VQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVS-----TLEEKRSDFEDLIL 699
             PD    + + + Y + G  + A      L  +   + VS      L +     ++ I 
Sbjct: 725 GGPDIVASNSMINLYADLGLVSEAKLIFDDLRQKGSADGVSFATMMYLYKNLGMLDEAID 784

Query: 700 AEDSEAESRILQFCEDSNENLAFTAALLQLRWC 732
             D   +S +L+ C   N+ +A  A   QL  C
Sbjct: 785 VADEMKQSGLLRDCASFNKVMACYATNGQLSAC 817



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 70/333 (21%), Positives = 140/333 (42%), Gaps = 30/333 (9%)

Query: 328 SHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLD 387
           + TY+  I        L++  +V   M +  +     T  T+   C     L  AE LL 
Sbjct: 345 TATYNTLIDLYGKAGRLKDAADVFAEMLKLGVAMDTITFNTMIYTCGSHGHLSEAETLLT 404

Query: 388 QIS-RCTNP--KPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVN 443
           ++  R  +P  K ++ FL+        + A+K + K+R+  L PD+ T+  +  +    N
Sbjct: 405 EMEERGISPDTKTYNIFLSLYADGGNIDAALKCYRKIREVGLFPDVVTHRAVLHVLCERN 464

Query: 444 APYEEGNMFSQVDSAK--------------RINAIEMDMAR-------NNIQHSHISMKN 482
              E   + +++  ++               +N   +D A+          + S  +   
Sbjct: 465 MVGEVETVIAEMKRSRVRVDEHSIPVVIKMYVNEGLLDKAKIFLEEHLLEDELSSRTRVA 524

Query: 483 LLKALGAEGMIRELIQYFCDSKTPLGTPT----YNTVLHSLVEAQESHRAMEIFKQMKTC 538
           ++ A   +G+  E    F   K  LG       YN ++ +  +A+   +A  +FK M+  
Sbjct: 525 IIDAYAEKGLWAEAENVFI-GKRDLGQKKDVVEYNVMVKAYGKAKLYDKAFSLFKGMRNH 583

Query: 539 GIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEA 598
           G  PN +TYN +I   S       A  +++ M + GF PQ +T++A+I      G   +A
Sbjct: 584 GTWPNESTYNSLIQMFSGGDLVDEARGILAEMQKMGFKPQCLTFSAVIACYARLGRLPDA 643

Query: 599 LNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
           + + + +   G+  + ++Y +++    E G ++
Sbjct: 644 VGVYEEMVRLGVKPNEVVYGSLINGFSETGNVE 676



 Score = 43.5 bits (101), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 39/87 (44%)

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           YN VL  L  AQ+       + +M   G+ P   TY +++D        K A   +  M 
Sbjct: 187 YNVVLRVLGRAQKWDELRLCWIEMAKNGVLPTNNTYGMLVDVYGKAGLVKEALLWIKHMK 246

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEA 598
             G +P  +    ++++L D G+FD A
Sbjct: 247 LRGVFPDEVAMNTVVRVLKDAGEFDWA 273



 Score = 40.4 bits (93), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 64/325 (19%), Positives = 125/325 (38%), Gaps = 23/325 (7%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           ++ ++ A G+ +    A  L   M++ G  P+  TY+  I+       +     +L  MQ
Sbjct: 557 YNVMVKAYGKAKLYDKAFSLFKGMRNHGTWPNESTYNSLIQMFSGGDLVDEARGILAEMQ 616

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT---NPKPFSAFLAACDTMDKPE 412
           +   KPQ  T + +    ++   L  A  + +++ R     N   + + +         E
Sbjct: 617 KMGFKPQCLTFSAVIACYARLGRLPDAVGVYEEMVRLGVKPNEVVYGSLINGFSETGNVE 676

Query: 413 RAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQV---DSAKRINAIEMDMA 469
            A+  F KM +            F +  N          +S+V   + AK +     D+ 
Sbjct: 677 EALCYFRKMDE------------FGISANQIVLTSLIKAYSKVGCLEGAKTLYEGMKDLE 724

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCD--SKTPLGTPTYNTVLHSLVEAQESHR 527
                 +  SM NL   L   G++ E    F D   K      ++ T+++          
Sbjct: 725 GGPDIVASNSMINLYADL---GLVSEAKLIFDDLRQKGSADGVSFATMMYLYKNLGMLDE 781

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A+++  +MK  G+  + A++N ++ C +      +   L+  M+     P T T+  +  
Sbjct: 782 AIDVADEMKQSGLLRDCASFNKVMACYATNGQLSACGELLHEMISRRILPDTGTFKVMFT 841

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPH 612
           +L   G   EA+  L+    EG P+
Sbjct: 842 VLKKGGLPTEAVTQLESSYQEGKPY 866



 Score = 40.0 bits (92), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 56/135 (41%), Gaps = 21/135 (15%)

Query: 579 TMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIE 638
           T TY  LI +    G   +A ++   +   G+  D + +NT++      G +   E ++ 
Sbjct: 345 TATYNTLIDLYGKAGRLKDAADVFAEMLKLGVAMDTITFNTMIYTCGSHGHLSEAETLLT 404

Query: 639 QMHQNKVQPDPSTCHFVFSGYVNCGFHNSAME-------------------ALQVLSMRM 679
           +M +  + PD  T +   S Y + G  ++A++                    L VL  R 
Sbjct: 405 EMEERGISPDTKTYNIFLSLYADGGNIDAALKCYRKIREVGLFPDVVTHRAVLHVLCERN 464

Query: 680 LCEEVSTL--EEKRS 692
           +  EV T+  E KRS
Sbjct: 465 MVGEVETVIAEMKRS 479



 Score = 39.3 bits (90), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 73/165 (44%), Gaps = 9/165 (5%)

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHR 527
           ++R   ++S + + ++L+AL +E  I + +     S     +P   TV+  L E     R
Sbjct: 115 ISRRKKKYSGV-LPSILRALESENNIEDTL-----SSCGKLSPKEQTVI--LKEQSSWER 166

Query: 528 AMEIFKQMKTC-GIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
            + +F+ +K+     PN   YN+++      + +         M ++G  P   TY  L+
Sbjct: 167 VLRVFEWIKSQEDYVPNVIHYNVVLRVLGRAQKWDELRLCWIEMAKNGVLPTNNTYGMLV 226

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
            +    G   EAL  +  + L G+  D +  NT+++   + G  D
Sbjct: 227 DVYGKAGLVKEALLWIKHMKLRGVFPDEVAMNTVVRVLKDAGEFD 271


>gi|359482689|ref|XP_003632809.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Vitis vinifera]
          Length = 879

 Score = 79.0 bits (193), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 112/575 (19%), Positives = 227/575 (39%), Gaps = 83/575 (14%)

Query: 120 LNNKCYLLMMQALCKGGYLEEASNLIYFLGERYG--IYPILPVYNSFLGACAKLHSMVHA 177
           ++N    +M++ LCK G LEE   LI    +R+G    P +  YN+ +    K   M  A
Sbjct: 202 VDNYSTCIMVKGLCKEGKLEEGRKLIE---DRWGQGCIPNIIFYNTLIDGYCKKGDMEMA 258

Query: 178 N-LCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEI-WEDYIKHYSLSIFSLRKFVW 235
           N L ++L     +   E TY  ++     + +  A+  +  E   +  ++++      + 
Sbjct: 259 NGLFIELKLKGFLPTVE-TYGAIINGFCKKGDFKAIDRLLMEMNSRGLTVNVQVYNTIID 317

Query: 236 SFTRLRDLKSAYETLQHMVALAMMGKLYI-NRTSEGRLRSSRLDIPIPLNALPVMKVL-- 292
           +  +   +  A ET++ M+       +   N    G  R  ++     L    + K L  
Sbjct: 318 ARYKHGHIVKAVETIEGMIECGCKPDIVTYNTLISGSCRDGKVSEADQLLEQALGKGLMP 377

Query: 293 -RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVL 351
            ++S++ +IHA  +      A   +++M   G +P   TY   +  +V    +   + + 
Sbjct: 378 NKFSYTPLIHAYCKQGGYDRASNWLIEMTERGHKPDLVTYGALVHGLVVAGEVDVALTIR 437

Query: 352 KIMQQNNLKPQDSTIATLSVECSKALELDLAEALL-DQISRCTNPKPFSAFLAACDTMDK 410
           + M +  + P       L     K  +L  A+ LL + + +   P  F  +    D   +
Sbjct: 438 EKMLERGVFPDAGIYNILMSGLCKKFKLPAAKLLLAEMLDQSVLPDAF-VYATLVDGFIR 496

Query: 411 P---ERAIKIFA-KMRQKLRPDIRTYELL---FSLFGNVNAPYEEGNMFSQVDSAKRINA 463
               + A K+F   + + + P I  Y  +   +  FG +       +  + ++  K+ + 
Sbjct: 497 NGNLDEARKLFELTIEKGMNPGIVGYNAMIKGYCKFGMMK------DAMACINRMKKRHL 550

Query: 464 IEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQ 523
              +   + +   ++   +L    GA+ M RE+++  C         TY ++++      
Sbjct: 551 APDEFTYSTVIDGYVKQHDLD---GAQKMFREMVKMKCKPNVV----TYTSLINGFCRKG 603

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDC-CSIIRCFKSASALVSM------------- 569
           + HR+++IF++M+ CG+ PN  TY+I+I   C   +   +AS    M             
Sbjct: 604 DLHRSLKIFREMQACGLVPNVVTYSILIGSFCKEAKLIDAASFFEEMLMNKCVPNDVTFN 663

Query: 570 -----------------------------------MVRDGFYPQTMTYTALIKILLDYGD 594
                                              M+ DG+ P++  Y +++  L  YG 
Sbjct: 664 YLVNGFSKNGTRAISEKGNEFQENKQSMFLNFFGRMISDGWAPRSAAYNSILICLCQYGM 723

Query: 595 FDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
           F  AL L + ++ +G   D + +  +L   C +GR
Sbjct: 724 FRTALQLSNKMTSKGCIPDSVSFVALLHGVCLEGR 758



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 75/152 (49%), Gaps = 4/152 (2%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFK--SASALVS 568
           TY  ++H LV A E   A+ I ++M   G+ P+A  YNI++    + + FK  +A  L++
Sbjct: 416 TYGALVHGLVVAGEVDVALTIREKMLERGVFPDAGIYNILMS--GLCKKFKLPAAKLLLA 473

Query: 569 MMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
            M+     P    Y  L+   +  G+ DEA  L +L   +G+   ++ YN ++K  C+ G
Sbjct: 474 EMLDQSVLPDAFVYATLVDGFIRNGNLDEARKLFELTIEKGMNPGIVGYNAMIKGYCKFG 533

Query: 629 RIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYV 660
            +      I +M +  + PD  T   V  GYV
Sbjct: 534 MMKDAMACINRMKKRHLAPDEFTYSTVIDGYV 565



 Score = 59.3 bits (142), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 84/191 (43%), Gaps = 14/191 (7%)

Query: 474 QHSHISMKNLLKALGA-EGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIF 532
           +H HI     +KA+   EGMI       C  K  +   TYNT++       +   A ++ 
Sbjct: 321 KHGHI-----VKAVETIEGMIE------CGCKPDI--VTYNTLISGSCRDGKVSEADQLL 367

Query: 533 KQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDY 592
           +Q    G+ PN  +Y  +I        +  AS  +  M   G  P  +TY AL+  L+  
Sbjct: 368 EQALGKGLMPNKFSYTPLIHAYCKQGGYDRASNWLIEMTERGHKPDLVTYGALVHGLVVA 427

Query: 593 GDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTC 652
           G+ D AL + + +   G+  D  +YN ++   C+K ++   + ++ +M    V PD    
Sbjct: 428 GEVDVALTIREKMLERGVFPDAGIYNILMSGLCKKFKLPAAKLLLAEMLDQSVLPDAFVY 487

Query: 653 HFVFSGYVNCG 663
             +  G++  G
Sbjct: 488 ATLVDGFIRNG 498



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/199 (21%), Positives = 82/199 (41%), Gaps = 3/199 (1%)

Query: 483 LLKALGAEGMIRELIQYFCDSKTPLGTPT---YNTVLHSLVEAQESHRAMEIFKQMKTCG 539
           ++K L  EG + E  +   D       P    YNT++    +  +   A  +F ++K  G
Sbjct: 210 MVKGLCKEGKLEEGRKLIEDRWGQGCIPNIIFYNTLIDGYCKKGDMEMANGLFIELKLKG 269

Query: 540 IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEAL 599
             P   TY  +I+       FK+   L+  M   G       Y  +I     +G   +A+
Sbjct: 270 FLPTVETYGAIINGFCKKGDFKAIDRLLMEMNSRGLTVNVQVYNTIIDARYKHGHIVKAV 329

Query: 600 NLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
             ++ +   G   D++ YNT++  +C  G++   + ++EQ     + P+  +   +   Y
Sbjct: 330 ETIEGMIECGCKPDIVTYNTLISGSCRDGKVSEADQLLEQALGKGLMPNKFSYTPLIHAY 389

Query: 660 VNCGFHNSAMEALQVLSMR 678
              G ++ A   L  ++ R
Sbjct: 390 CKQGGYDRASNWLIEMTER 408


>gi|68566156|sp|P0C043.1|PP318_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At4g17915
          Length = 463

 Score = 79.0 bits (193), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 94/468 (20%), Positives = 178/468 (38%), Gaps = 64/468 (13%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           AE L++    LG+ P   TY+  I       G+     V + M+   ++P  +T  +L  
Sbjct: 32  AESLIIDGIRLGVDPDVVTYNTLISGYCRFVGIEEAYAVTRRMRDAGIRPDVATYNSLIA 91

Query: 372 ECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRT 431
             ++ L LD    L D++                               +   + PD+ +
Sbjct: 92  GAARRLMLDHVLYLFDEM-------------------------------LEWGIYPDLWS 120

Query: 432 YELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEG 491
           Y  L   +  +   +EE               +  D+    +     +   LL AL   G
Sbjct: 121 YNTLMCCYFKL-GKHEEA-----------FRVLYKDLQLAGLNPGPDTYNVLLDALCKCG 168

Query: 492 MIRELIQYFCDSKTPLGTP--TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNI 549
            I   ++ F + ++       TYN +++ L +++    A  +  ++K  G  PNA TY  
Sbjct: 169 YIDNALELFKEMQSRFKPELMTYNILINGLCKSRRVGTAKWMLTELKKSGYTPNAVTYTT 228

Query: 550 MIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEG 609
           ++      R  +    L   M R+G+      Y A++  L+  G   EA   +  +  +G
Sbjct: 229 ILKLYFKTRRIRRGLQLFLEMKREGYTYDGYAYFAVVSALIKTGRTKEAYEYMQELVRKG 288

Query: 610 IPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAM 669
             HD++ YNT+L    + G +D ++ ++ ++ +  ++ D  T   + +G +  G    A 
Sbjct: 289 RRHDIVSYNTLLNLYFKDGNLDAVDDLLGEIERRGMKADEYTHTIIVNGLLRTGQTRRAE 348

Query: 670 E----------ALQVLSMRMLCE---EVSTLEEKRSDFEDLILAEDSEAESRILQFCEDS 716
           E           L +++   L +   +   ++     FE + + ++    S +   C+D 
Sbjct: 349 EHFVSMGEMGIGLNLVTCNCLVDGLCKAGHVDRAMRYFESMEVKDEYTYTSVVHNLCKD- 407

Query: 717 NENLAFTAALLQLRWCTIVGFPISWSLDRA--SGLEDSQTNSNSRKQE 762
              + F  A   L  C   G  I  S  RA  SGL  S     +RK +
Sbjct: 408 ---MRFVCASKLLLSCYNKGIKIPTSARRAVLSGLRMSGCYGEARKAK 452



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 78/188 (41%), Gaps = 6/188 (3%)

Query: 492 MIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI 551
           M+R L+ +     T L T   N  + SL + ++  +A  +       G+ P+  TYN +I
Sbjct: 1   MVRGLVNF-----TGLSTRLLNICVDSLCKFRKLEKAESLIIDGIRLGVDPDVVTYNTLI 55

Query: 552 DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIP 611
                    + A A+   M   G  P   TY +LI         D  L L D +   GI 
Sbjct: 56  SGYCRFVGIEEAYAVTRRMRDAGIRPDVATYNSLIAGAARRLMLDHVLYLFDEMLEWGIY 115

Query: 612 HDVLLYNTILKKACEKGR-IDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAME 670
            D+  YNT++    + G+  +    + + +    + P P T + +      CG+ ++A+E
Sbjct: 116 PDLWSYNTLMCCYFKLGKHEEAFRVLYKDLQLAGLNPGPDTYNVLLDALCKCGYIDNALE 175

Query: 671 ALQVLSMR 678
             + +  R
Sbjct: 176 LFKEMQSR 183



 Score = 43.5 bits (101), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 96/495 (19%), Positives = 187/495 (37%), Gaps = 71/495 (14%)

Query: 119 GLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHAN 178
           GL+ +   + + +LCK   LE+A +LI   G R G+ P +  YN+ +    +   +  A 
Sbjct: 10  GLSTRLLNICVDSLCKFRKLEKAESLI-IDGIRLGVDPDVVTYNTLISGYCRFVGIEEAY 68

Query: 179 LCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK-HYSLSIFSLRKFVWSF 237
                M    +  +  TY  L+  A  +  L  V  ++++ ++      ++S    +  +
Sbjct: 69  AVTRRMRDAGIRPDVATYNSLIAGAARRLMLDHVLYLFDEMLEWGIYPDLWSYNTLMCCY 128

Query: 238 TRLRDLKSAYETLQHMVALAMM--GKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWS 295
            +L   + A+  L   + LA +  G    N   +   +   +D     NAL + K ++  
Sbjct: 129 FKLGKHEEAFRVLYKDLQLAGLNPGPDTYNVLLDALCKCGYID-----NALELFKEMQSR 183

Query: 296 FSD-------VIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGM 348
           F         +I+   +++  G A+ ++ +++  G  P++ TY   ++     R +R G+
Sbjct: 184 FKPELMTYNILINGLCKSRRVGTAKWMLTELKKSGYTPNAVTYTTILKLYFKTRRIRRGL 243

Query: 349 EVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTM 408
           ++   M++                                           A+ A    +
Sbjct: 244 QLFLEMKREGYTYDG-----------------------------------YAYFAVVSAL 268

Query: 409 DKPERAIKIFAKM----RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAI 464
            K  R  + +  M    R+  R DI +Y  L +L+      +++GN+ +  D    I   
Sbjct: 269 IKTGRTKEAYEYMQELVRKGRRHDIVSYNTLLNLY------FKDGNLDAVDDLLGEIERR 322

Query: 465 EMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQE 524
            M       +++H  + N L   G      E      +    L   T N ++  L +A  
Sbjct: 323 GMKAD----EYTHTIIVNGLLRTGQTRRAEEHFVSMGEMGIGLNLVTCNCLVDGLCKAGH 378

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMI-DCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
             RAM  F+ M+      +  TY  ++ + C  +R F  AS L+      G    T    
Sbjct: 379 VDRAMRYFESMEV----KDEYTYTSVVHNLCKDMR-FVCASKLLLSCYNKGIKIPTSARR 433

Query: 584 ALIKILLDYGDFDEA 598
           A++  L   G + EA
Sbjct: 434 AVLSGLRMSGCYGEA 448


>gi|302768589|ref|XP_002967714.1| hypothetical protein SELMODRAFT_63558 [Selaginella moellendorffii]
 gi|300164452|gb|EFJ31061.1| hypothetical protein SELMODRAFT_63558 [Selaginella moellendorffii]
          Length = 384

 Score = 79.0 bits (193), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 78/379 (20%), Positives = 152/379 (40%), Gaps = 30/379 (7%)

Query: 315 LMLQMQSLGLQPSSHTYDGFIRAIVSDRG-LRNGMEVLKIMQQNNLKPQDSTIATLSVEC 373
           L  +M   G + +  TY   I   +  +  L + + +L++M+++  KP +     L    
Sbjct: 4   LFYRMMKDGCEATVVTYTVIIHGYLRQKSKLDHALRLLEVMKESGKKPDEILYNCLVNGL 63

Query: 374 SKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLR-PDI 429
             +  L+ AE +LD + R     N   ++  +       + +   K+F +M+ K   P+ 
Sbjct: 64  VNSGRLEAAEKILDDMKRDKVSANLVTYTNLIKEYANTGRLQDCRKLFQEMKDKGESPNS 123

Query: 430 RTYELLFSLFGNVNAPYEEGNMFSQVDS---AKRINAIEMDMARNNIQHSHISMKNLLKA 486
            TY  L   +G      E   ++ ++D    AK ++   + +A    +     M+ LL  
Sbjct: 124 WTYNALIQGYGRKGLFKEALELYDEMDGVGCAKDVHTYNIAIAMYGKRGLLEDMERLLDE 183

Query: 487 LGAEGM----------------------IRELIQYFCDSKTPLGTPTYNTVLHSLVEAQE 524
           +  +G+                        E+++   ++       TYN +L S  + Q 
Sbjct: 184 MDTKGVPPDQVTYNTLLDVYAKKSYFVKAHEILREMTEAGYRPNIWTYNIMLSSARKEQS 243

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
              A ++F+ +K+ G+ PN  TY+ M+        +  A+ L   M+  G  P  + Y+ 
Sbjct: 244 VAEATQLFENLKSKGVVPNIVTYSAMLSLYGRHGLYTEAAKLWDEMIEAGCIPCIIAYSG 303

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
           LI+    +G + EAL     +   GI  D  +Y  ++    + GR    E +  +M +  
Sbjct: 304 LIESYGHHGMYQEALACFQDMRKSGIVPDTKIYTALMDAYGKAGRCREAELLYFEMTKEG 363

Query: 645 VQPDPSTCHFVFSGYVNCG 663
             PD  T   +   + N G
Sbjct: 364 FVPDGITYGILVRAFANAG 382



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 68/305 (22%), Positives = 116/305 (38%), Gaps = 51/305 (16%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGME-VLK 352
           W+++ +I   GR      A +L  +M  +G     HTY+  I A+   RGL   ME +L 
Sbjct: 124 WTYNALIQGYGRKGLFKEALELYDEMDGVGCAKDVHTYNIAI-AMYGKRGLLEDMERLLD 182

Query: 353 IMQQNNLKPQDSTIAT-LSVECSKALELDLAEALLDQISRCTNPK--PFSAFLAACDTMD 409
            M    + P   T  T L V   K+  +   E L +       P    ++  L++     
Sbjct: 183 EMDTKGVPPDQVTYNTLLDVYAKKSYFVKAHEILREMTEAGYRPNIWTYNIMLSSARKEQ 242

Query: 410 KPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
               A ++F  ++ K + P+I TY  + SL+G      E   ++ ++  A  I  I    
Sbjct: 243 SVAEATQLFENLKSKGVVPNIVTYSAMLSLYGRHGLYTEAAKLWDEMIEAGCIPCI---- 298

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRA 528
                    I+   L+++ G  GM +E                                A
Sbjct: 299 ---------IAYSGLIESYGHHGMYQE--------------------------------A 317

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
           +  F+ M+  GI P+   Y  ++D        + A  L   M ++GF P  +TY  L++ 
Sbjct: 318 LACFQDMRKSGIVPDTKIYTALMDAYGKAGRCREAELLYFEMTKEGFVPDGITYGILVRA 377

Query: 589 LLDYG 593
             + G
Sbjct: 378 FANAG 382



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 72/165 (43%)

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           YN +++ LV +     A +I   MK   +  N  TY  +I   +     +    L   M 
Sbjct: 56  YNCLVNGLVNSGRLEAAEKILDDMKRDKVSANLVTYTNLIKEYANTGRLQDCRKLFQEMK 115

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
             G  P + TY ALI+     G F EAL L D +   G   DV  YN  +    ++G ++
Sbjct: 116 DKGESPNSWTYNALIQGYGRKGLFKEALELYDEMDGVGCAKDVHTYNIAIAMYGKRGLLE 175

Query: 632 VIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
            +E ++++M    V PD  T + +   Y    +   A E L+ ++
Sbjct: 176 DMERLLDEMDTKGVPPDQVTYNTLLDVYAKKSYFVKAHEILREMT 220



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/205 (22%), Positives = 82/205 (40%), Gaps = 3/205 (1%)

Query: 467 DMARNNIQHSHISMKNLLKALGAEGMI---RELIQYFCDSKTPLGTPTYNTVLHSLVEAQ 523
           DM R+ +  + ++  NL+K     G +   R+L Q   D      + TYN ++       
Sbjct: 78  DMKRDKVSANLVTYTNLIKEYANTGRLQDCRKLFQEMKDKGESPNSWTYNALIQGYGRKG 137

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
               A+E++ +M   G   +  TYNI I         +    L+  M   G  P  +TY 
Sbjct: 138 LFKEALELYDEMDGVGCAKDVHTYNIAIAMYGKRGLLEDMERLLDEMDTKGVPPDQVTYN 197

Query: 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
            L+ +      F +A  +L  ++  G   ++  YN +L  A ++  +     + E +   
Sbjct: 198 TLLDVYAKKSYFVKAHEILREMTEAGYRPNIWTYNIMLSSARKEQSVAEATQLFENLKSK 257

Query: 644 KVQPDPSTCHFVFSGYVNCGFHNSA 668
            V P+  T   + S Y   G +  A
Sbjct: 258 GVVPNIVTYSAMLSLYGRHGLYTEA 282



 Score = 44.3 bits (103), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 32/146 (21%), Positives = 62/146 (42%), Gaps = 5/146 (3%)

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIR---CFKSASALVSMMVRDGFYPQTMTYTA 584
           A  +F +M   G      TY ++I     +R       A  L+ +M   G  P  + Y  
Sbjct: 1   ACSLFYRMMKDGCEATVVTYTVIIH--GYLRQKSKLDHALRLLEVMKESGKKPDEILYNC 58

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
           L+  L++ G  + A  +LD +  + +  +++ Y  ++K+    GR+     + ++M    
Sbjct: 59  LVNGLVNSGRLEAAEKILDDMKRDKVSANLVTYTNLIKEYANTGRLQDCRKLFQEMKDKG 118

Query: 645 VQPDPSTCHFVFSGYVNCGFHNSAME 670
             P+  T + +  GY   G    A+E
Sbjct: 119 ESPNSWTYNALIQGYGRKGLFKEALE 144


>gi|125596712|gb|EAZ36492.1| hypothetical protein OsJ_20823 [Oryza sativa Japonica Group]
          Length = 604

 Score = 79.0 bits (193), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 78/164 (47%)

Query: 507 LGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASAL 566
           L T  YN ++      +  H A E+ ++MK  GI P+  TYN ++        F +   L
Sbjct: 386 LDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCKAGDFAAVDEL 445

Query: 567 VSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE 626
           +  M+ DG  P  +T+  L+      G  DEAL +L  +   GI  + ++YNT++   C+
Sbjct: 446 LGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNNVIYNTLIDFLCK 505

Query: 627 KGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAME 670
           +G +D+   + ++M +  V  + +T + +  G  +      A E
Sbjct: 506 RGDVDLAIELFDEMKEKSVPANVTTFNALLKGLRDKNMPEKAFE 549



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 83/391 (21%), Positives = 151/391 (38%), Gaps = 56/391 (14%)

Query: 294 WSFSDVIHACGRTQN-SGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
           ++F+ ++ A  R ++  G+A    L      ++P   TY   +  +     + + + VL 
Sbjct: 137 FAFNSILAALARVRDVPGMARIYALMQGCASVRPDVVTYGILVNGLCKAGRVGDALRVLD 196

Query: 353 IMQQNNL--KPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDK 410
            M + +L  +P   T+ T+     K+  +  A A ++Q     +  P             
Sbjct: 197 GMSRQDLDIRPDVVTLNTVVDGLCKSGRVQEALAFVEQRMSSVHGCP------------- 243

Query: 411 PERAIKIFAKMRQKLRPDIRTYELLFSLF---GNVNAPYEEGNMFSQVDSAKRINAIEMD 467
                           P+  TY  L   F   GN++  YE                +   
Sbjct: 244 ----------------PNTVTYNCLIDAFCRVGNISMAYE----------------LVEK 271

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKT--PLGTP---TYNTVLHSLVEA 522
           M    +  + +++  ++  L   G     +++F + +T  P G     TY+T++ +L+  
Sbjct: 272 MENEGVPQNIVTLNTIVGGLCRAGRTGAALEFFREKRTVWPEGKGNAVTYSTLVGALLHT 331

Query: 523 QESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTY 582
                AME+F +  + G  P+A  Y  MI   +     + A ++ S M   GF   T  Y
Sbjct: 332 NNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMASSMKEAGFKLDTKAY 391

Query: 583 TALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642
             LI          EA  LL  +   GI  DV  YNT+L  +C+ G    ++ ++ +M  
Sbjct: 392 NILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCKAGDFAAVDELLGKMID 451

Query: 643 NKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           +  QP   T   +  GY   G  + A+  L+
Sbjct: 452 DGCQPSVITFGTLVHGYCKVGKIDEALRILR 482



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 70/328 (21%), Positives = 139/328 (42%), Gaps = 51/328 (15%)

Query: 381 LAEALLDQI-SRCTNPKPFSAF--------------------LAACDTMDKPERAIKIFA 419
           L  A+L ++ +R ++P+P + F                    LAA   +       +I+A
Sbjct: 101 LLSAILSKLLARFSSPEPAARFLAASLAAGAPAPDVFAFNSILAALARVRDVPGMARIYA 160

Query: 420 KMR--QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMD-MARN--NIQ 474
            M+    +RPD+ TY +L      VN   + G    +V  A R+    +D M+R   +I+
Sbjct: 161 LMQGCASVRPDVVTYGIL------VNGLCKAG----RVGDALRV----LDGMSRQDLDIR 206

Query: 475 HSHISMKNLLKALGAEGMIRELIQYFCDSKT-----PLGTPTYNTVLHSLVEAQESHRAM 529
              +++  ++  L   G ++E + +     +     P  T TYN ++ +         A 
Sbjct: 207 PDVVTLNTVVDGLCKSGRVQEALAFVEQRMSSVHGCPPNTVTYNCLIDAFCRVGNISMAY 266

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQ----TMTYTAL 585
           E+ ++M+  G+P N  T N ++    + R  ++ +AL     +   +P+     +TY+ L
Sbjct: 267 ELVEKMENEGVPQNIVTLNTIVG--GLCRAGRTGAALEFFREKRTVWPEGKGNAVTYSTL 324

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           +  LL   +   A+ L      EG   D ++Y T++    + GR++    +   M +   
Sbjct: 325 VGALLHTNNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMASSMKEAGF 384

Query: 646 QPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           + D    + + +G+      + A E LQ
Sbjct: 385 KLDTKAYNILIAGFCRKKRLHEAYELLQ 412



 Score = 43.1 bits (100), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 85/445 (19%), Positives = 154/445 (34%), Gaps = 92/445 (20%)

Query: 202 LAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGK 261
           LA  ++ +S+VH    + + +  L        + +F R+ ++  AYE ++ M    +   
Sbjct: 229 LAFVEQRMSSVHGCPPNTVTYNCL--------IDAFCRVGNISMAYELVEKMENEGVPQN 280

Query: 262 LY-INRTSEGRLRSSRLDIPIPL-----NALPVMKVLRWSFSDVIHACGRTQNSGLAEQL 315
           +  +N    G  R+ R    +          P  K    ++S ++ A   T N G+A +L
Sbjct: 281 IVTLNTIVGGLCRAGRTGAALEFFREKRTVWPEGKGNAVTYSTLVGALLHTNNVGMAMEL 340

Query: 316 MLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSK 375
             +  S G  P +  Y   I  +     L +   +   M++   K               
Sbjct: 341 FHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMASSMKEAGFK--------------- 385

Query: 376 ALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYEL 434
                     LD        K ++  +A      +   A ++  +M++  +RPD+ TY  
Sbjct: 386 ----------LDT-------KAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNT 428

Query: 435 LFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIR 494
           L S  G+  A       F+ VD                                      
Sbjct: 429 LLS--GSCKA-----GDFAAVD-------------------------------------- 443

Query: 495 ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCC 554
           EL+    D        T+ T++H   +  +   A+ I + M   GI PN   YN +ID  
Sbjct: 444 ELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNNVIYNTLIDFL 503

Query: 555 SIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDV 614
                   A  L   M          T+ AL+K L D    ++A  L+D +  E    D 
Sbjct: 504 CKRGDVDLAIELFDEMKEKSVPANVTTFNALLKGLRDKNMPEKAFELMDQMREERCFPDY 563

Query: 615 LLYNTILKKACEKGRIDVIEFIIEQ 639
           +  + +++     G  D ++  ++Q
Sbjct: 564 VTVDVLMEWLPVIGETDRLKRFMQQ 588



 Score = 40.4 bits (93), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 80/441 (18%), Positives = 161/441 (36%), Gaps = 90/441 (20%)

Query: 128 MMQALCKGGYLEEASNLIYFLGER----YGIYPILPVYNSFLGACAKLHSMVHANLCLDL 183
           ++  LCK G ++EA   + F+ +R    +G  P    YN  + A  ++ ++  A   ++ 
Sbjct: 215 VVDGLCKSGRVQEA---LAFVEQRMSSVHGCPPNTVTYNCLIDAFCRVGNISMAYELVEK 271

Query: 184 MDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDL 243
           M++  V +N VT   ++          A            +L  F  ++ VW   +   +
Sbjct: 272 MENEGVPQNIVTLNTIVGGLCRAGRTGA------------ALEFFREKRTVWPEGKGNAV 319

Query: 244 KSAYETLQ----HMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDV 299
              Y TL     H   + M  +L+  + SEG    +               ++ ++    
Sbjct: 320 --TYSTLVGALLHTNNVGMAMELFHEKMSEGHSPDA---------------IMYFTMISG 362

Query: 300 IHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNL 359
           +   GR ++   A  +   M+  G +  +  Y+  I      + L    E+L+ M++  +
Sbjct: 363 LTQAGRLED---ACSMASSMKEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGI 419

Query: 360 KPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFA 419
           +P   T  TL     KA +    + LL ++                              
Sbjct: 420 RPDVCTYNTLLSGSCKAGDFAAVDELLGKM------------------------------ 449

Query: 420 KMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHIS 479
            +    +P + T+  L   +  V           ++D A RI      M  + I  +++ 
Sbjct: 450 -IDDGCQPSVITFGTLVHGYCKVG----------KIDEALRI---LRSMDESGIHPNNVI 495

Query: 480 MKNLLKALGAEGMIRELIQYFCDSK---TPLGTPTYNTVLHSLVEAQESHRAMEIFKQMK 536
              L+  L   G +   I+ F + K    P    T+N +L  L +     +A E+  QM+
Sbjct: 496 YNTLIDFLCKRGDVDLAIELFDEMKEKSVPANVTTFNALLKGLRDKNMPEKAFELMDQMR 555

Query: 537 TCGIPPNAATYNIMIDCCSII 557
                P+  T +++++   +I
Sbjct: 556 EERCFPDYVTVDVLMEWLPVI 576


>gi|52076779|dbj|BAD45723.1| putative pentatricopeptide repeat-containing protein [Oryza sativa
           Japonica Group]
          Length = 629

 Score = 79.0 bits (193), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 78/164 (47%)

Query: 507 LGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASAL 566
           L T  YN ++      +  H A E+ ++MK  GI P+  TYN ++        F +   L
Sbjct: 386 LDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCKAGDFAAVDEL 445

Query: 567 VSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE 626
           +  M+ DG  P  +T+  L+      G  DEAL +L  +   GI  + ++YNT++   C+
Sbjct: 446 LGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNNVIYNTLIDFLCK 505

Query: 627 KGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAME 670
           +G +D+   + ++M +  V  + +T + +  G  +      A E
Sbjct: 506 RGDVDLAIELFDEMKEKSVPANVTTFNALLKGLRDKNMPEKAFE 549



 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 83/391 (21%), Positives = 151/391 (38%), Gaps = 56/391 (14%)

Query: 294 WSFSDVIHACGRTQN-SGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
           ++F+ ++ A  R ++  G+A    L      ++P   TY   +  +     + + + VL 
Sbjct: 137 FAFNSILAALARVRDVPGMARIYALMQGCASVRPDVVTYGILVNGLCKAGRVGDALRVLD 196

Query: 353 IMQQNNL--KPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDK 410
            M + +L  +P   T+ T+     K+  +  A A ++Q     +  P             
Sbjct: 197 GMSRQDLDIRPDVVTLNTVVDGLCKSGRVQEALAFVEQRMSSVHGCP------------- 243

Query: 411 PERAIKIFAKMRQKLRPDIRTYELLFSLF---GNVNAPYEEGNMFSQVDSAKRINAIEMD 467
                           P+  TY  L   F   GN++  YE                +   
Sbjct: 244 ----------------PNTVTYNCLIDAFCRVGNISMAYE----------------LVEK 271

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKT--PLGTP---TYNTVLHSLVEA 522
           M    +  + +++  ++  L   G     +++F + +T  P G     TY+T++ +L+  
Sbjct: 272 MENEGVPQNIVTLNTIVGGLCRAGRTGAALEFFREKRTVWPEGKGNAVTYSTLVGALLHT 331

Query: 523 QESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTY 582
                AME+F +  + G  P+A  Y  MI   +     + A ++ S M   GF   T  Y
Sbjct: 332 NNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMASSMKEAGFKLDTKAY 391

Query: 583 TALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642
             LI          EA  LL  +   GI  DV  YNT+L  +C+ G    ++ ++ +M  
Sbjct: 392 NILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCKAGDFAAVDELLGKMID 451

Query: 643 NKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           +  QP   T   +  GY   G  + A+  L+
Sbjct: 452 DGCQPSVITFGTLVHGYCKVGKIDEALRILR 482



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 70/328 (21%), Positives = 139/328 (42%), Gaps = 51/328 (15%)

Query: 381 LAEALLDQI-SRCTNPKPFSAF--------------------LAACDTMDKPERAIKIFA 419
           L  A+L ++ +R ++P+P + F                    LAA   +       +I+A
Sbjct: 101 LLSAILSKLLARFSSPEPAARFLAASLAAGAPAPDVFAFNSILAALARVRDVPGMARIYA 160

Query: 420 KMR--QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMD-MARN--NIQ 474
            M+    +RPD+ TY +L      VN   + G    +V  A R+    +D M+R   +I+
Sbjct: 161 LMQGCASVRPDVVTYGIL------VNGLCKAG----RVGDALRV----LDGMSRQDLDIR 206

Query: 475 HSHISMKNLLKALGAEGMIRELIQYFCDSKT-----PLGTPTYNTVLHSLVEAQESHRAM 529
              +++  ++  L   G ++E + +     +     P  T TYN ++ +         A 
Sbjct: 207 PDVVTLNTVVDGLCKSGRVQEALAFVEQRMSSVHGCPPNTVTYNCLIDAFCRVGNISMAY 266

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQ----TMTYTAL 585
           E+ ++M+  G+P N  T N ++    + R  ++ +AL     +   +P+     +TY+ L
Sbjct: 267 ELVEKMENEGVPQNIVTLNTIVG--GLCRAGRTGAALEFFREKRTVWPEGKGNAVTYSTL 324

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           +  LL   +   A+ L      EG   D ++Y T++    + GR++    +   M +   
Sbjct: 325 VGALLHTNNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMASSMKEAGF 384

Query: 646 QPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           + D    + + +G+      + A E LQ
Sbjct: 385 KLDTKAYNILIAGFCRKKRLHEAYELLQ 412



 Score = 45.1 bits (105), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 88/466 (18%), Positives = 163/466 (34%), Gaps = 95/466 (20%)

Query: 202 LAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGK 261
           LA  ++ +S+VH    + + +  L        + +F R+ ++  AYE ++ M    +   
Sbjct: 229 LAFVEQRMSSVHGCPPNTVTYNCL--------IDAFCRVGNISMAYELVEKMENEGVPQN 280

Query: 262 LY-INRTSEGRLRSSRLDIPIPL-----NALPVMKVLRWSFSDVIHACGRTQNSGLAEQL 315
           +  +N    G  R+ R    +          P  K    ++S ++ A   T N G+A +L
Sbjct: 281 IVTLNTIVGGLCRAGRTGAALEFFREKRTVWPEGKGNAVTYSTLVGALLHTNNVGMAMEL 340

Query: 316 MLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSK 375
             +  S G  P +  Y   I  +     L +   +   M++   K               
Sbjct: 341 FHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMASSMKEAGFK--------------- 385

Query: 376 ALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYEL 434
                     LD        K ++  +A      +   A ++  +M++  +RPD+ TY  
Sbjct: 386 ----------LDT-------KAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNT 428

Query: 435 LFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIR 494
           L S  G+  A       F+ VD                                      
Sbjct: 429 LLS--GSCKA-----GDFAAVD-------------------------------------- 443

Query: 495 ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCC 554
           EL+    D        T+ T++H   +  +   A+ I + M   GI PN   YN +ID  
Sbjct: 444 ELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNNVIYNTLIDFL 503

Query: 555 SIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDV 614
                   A  L   M          T+ AL+K L D    ++A  L+D +  E    D 
Sbjct: 504 CKRGDVDLAIELFDEMKEKSVPANVTTFNALLKGLRDKNMPEKAFELMDQMREERCFPDY 563

Query: 615 LLYNTILKKACEKGRIDVIEFIIEQMHQN---KVQPDPSTCHFVFS 657
           +  + +++     G  D ++  ++Q       ++  D ++ +F F+
Sbjct: 564 VTVDVLMEWLPVIGETDRLKRFMQQGEHTASKRIVSDRTSAYFHFA 609


>gi|449476381|ref|XP_004154721.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17140-like [Cucumis sativus]
          Length = 875

 Score = 79.0 bits (193), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 84/364 (23%), Positives = 152/364 (41%), Gaps = 21/364 (5%)

Query: 324 LQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAE 383
           ++P ++T++  I A+     L N  EV   M +   KP + ++  L     +A       
Sbjct: 149 VKPQTYTFNLLISALCEMGYLENAREVFDKMSEKGCKPNEFSLGILVRGYCRAGLHSHGI 208

Query: 384 ALLDQISRCTNPKP----FSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSL 438
            LLD++ R +   P    ++  +++     +   A K+  KMR+  L PDI T+    + 
Sbjct: 209 DLLDEM-RSSGALPNRVAYNTVISSLCGEGQTVEAEKLVEKMREVGLSPDIVTFNCRIAA 267

Query: 439 FGNVNAPYEEGNMFS--QVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIREL 496
                   E   +F   Q+D        EM + + N     ++   +L+   +EGM  E 
Sbjct: 268 LCKSGQILEASRIFRDMQIDE-------EMGLPKPNT----VTYNLMLEGFCSEGMFEEA 316

Query: 497 IQYFCDSKTP--LGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCC 554
              F   K    L   +YN  +  LV + +   A  I  +M    I PN  +YNI++   
Sbjct: 317 RAIFDSMKNSETLSLRSYNIWMLGLVRSGKLLEAHLILNEMAEKNIKPNLYSYNILVHGL 376

Query: 555 SIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDV 614
                F  A +++ +M   G  P T+TY+ L+      G   EA  +L  +   G   ++
Sbjct: 377 CKYGMFSDARSILGLMRESGVAPDTVTYSTLLHGYCRRGKILEANYVLREMIQVGCFPNM 436

Query: 615 LLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQV 674
              N +L    ++GR    E +++ M++     D  TC+ + +G    G  + A+E +  
Sbjct: 437 YTCNILLHSLWKEGRASEAEDLLQMMNERGYGLDNVTCNTMINGLCKAGNLDKAIEIVSG 496

Query: 675 LSMR 678
           +  R
Sbjct: 497 MWTR 500



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 117/576 (20%), Positives = 220/576 (38%), Gaps = 67/576 (11%)

Query: 121 NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLC 180
           N   Y  ++ +LC  G   EA  L+  + E  G+ P +  +N  + A  K   ++ A+  
Sbjct: 222 NRVAYNTVISSLCGEGQTVEAEKLVEKMRE-VGLSPDIVTFNCRIAALCKSGQILEASRI 280

Query: 181 L-DLMDSRMVG---KNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWS 236
             D+     +G    N VTY  +L+    +        I++      +LS+ S   ++  
Sbjct: 281 FRDMQIDEEMGLPKPNTVTYNLMLEGFCSEGMFEEARAIFDSMKNSETLSLRSYNIWMLG 340

Query: 237 FTRLRDLKSAYETLQHMVALAMMGKLY-INRTSEGRLRSSRLDIPIPLNALPVMKVLRWS 295
             R   L  A+  L  M    +   LY  N    G  +          +A  ++ ++R S
Sbjct: 341 LVRSGKLLEAHLILNEMAEKNIKPNLYSYNILVHGLCKYGMFS-----DARSILGLMRES 395

Query: 296 --------FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNG 347
                   +S ++H   R      A  ++ +M  +G  P+ +T +  + ++  +      
Sbjct: 396 GVAPDTVTYSTLLHGYCRRGKILEANYVLREMIQVGCFPNMYTCNILLHSLWKEGRASEA 455

Query: 348 MEVLKIMQQNNLKPQDSTIATLSVECSKALELD-------------------LAEALLDQ 388
            ++L++M +      + T  T+     KA  LD                   L  + +D 
Sbjct: 456 EDLLQMMNERGYGLDNVTCNTMINGLCKAGNLDKAIEIVSGMWTRGSASLGNLGNSFIDL 515

Query: 389 ISRCTNPK---PFSAFLAA-----CDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFG 440
                N K   P S   A      C      E   K+   + +KL PD     L+F  F 
Sbjct: 516 FDIRNNGKKCLPDSITYATIIGGLCKVGRVDEAKKKLLEMIGKKLSPD----SLIFDTF- 570

Query: 441 NVNAPYEEGNMFSQVDSAKRINAIEM--DMARNNIQHSHISMKNLLKALGAEGMIRELIQ 498
                     +++     K  +A  +  +M +     S  +  +L++ LG+E  I E+  
Sbjct: 571 ----------IYNYCKQGKLSSAFRVLKEMEKKGCNKSLRTYNSLIQGLGSENQIFEIYG 620

Query: 499 YFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCS 555
              + K     P   TYN ++  L E  +   A  +  +M   GI PN  T+ I+I    
Sbjct: 621 LMDEMKERGIFPNVYTYNNIISCLSEGGKLKDATCLLDEMLQKGISPNIYTFRILIGAFF 680

Query: 556 IIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVL 615
               F +A  L  + +    + +++ Y+ +   LL  G+  +A  L +      +     
Sbjct: 681 KACDFGAAQELFEIALSLCGHKESL-YSFMFNELLAGGETLKAKELFEAALDRSLALKNF 739

Query: 616 LYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
           LY  +++K C+ G++D   FI+ +M   +   DP++
Sbjct: 740 LYRDLIEKLCKDGKLDDASFILHKMMDKQYSFDPAS 775



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 89/395 (22%), Positives = 151/395 (38%), Gaps = 52/395 (13%)

Query: 315 LMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTI-ATLSVEC 373
           L+ +M+S G  P+   Y+  I ++  +       ++++ M++  L P   T    ++  C
Sbjct: 210 LLDEMRSSGALPNRVAYNTVISSLCGEGQTVEAEKLVEKMREVGLSPDIVTFNCRIAALC 269

Query: 374 SKALELDLAEALLD-QISRCTN-PKP----FSAFLAACDTMDKPERAIKIFAKMRQKLRP 427
                L+ +    D QI      PKP    ++  L    +    E A  IF  M+     
Sbjct: 270 KSGQILEASRIFRDMQIDEEMGLPKPNTVTYNLMLEGFCSEGMFEEARAIFDSMKNSETL 329

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINA--IEMDMARNNIQHSHISMKNLLK 485
            +R+Y +                M   V S K + A  I  +MA  NI+ +  S   L+ 
Sbjct: 330 SLRSYNIW---------------MLGLVRSGKLLEAHLILNEMAEKNIKPNLYSYNILVH 374

Query: 486 ALGAEGMI---RELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPP 542
            L   GM    R ++    +S     T TY+T+LH      +   A  + ++M   G  P
Sbjct: 375 GLCKYGMFSDARSILGLMRESGVAPDTVTYSTLLHGYCRRGKILEANYVLREMIQVGCFP 434

Query: 543 NAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNL- 601
           N  T NI++           A  L+ MM   G+    +T   +I  L   G+ D+A+ + 
Sbjct: 435 NMYTCNILLHSLWKEGRASEAEDLLQMMNERGYGLDNVTCNTMINGLCKAGNLDKAIEIV 494

Query: 602 ------------------LDLVSLEG-----IPHDVLLYNTILKKACEKGRIDVIEFIIE 638
                             +DL  +       +P D + Y TI+   C+ GR+D  +  + 
Sbjct: 495 SGMWTRGSASLGNLGNSFIDLFDIRNNGKKCLP-DSITYATIIGGLCKVGRVDEAKKKLL 553

Query: 639 QMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           +M   K+ PD          Y   G  +SA   L+
Sbjct: 554 EMIGKKLSPDSLIFDTFIYNYCKQGKLSSAFRVLK 588



 Score = 55.8 bits (133), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 90/406 (22%), Positives = 169/406 (41%), Gaps = 60/406 (14%)

Query: 293 RWSFSDVIHA-CGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVL 351
           R +++ VI + CG  Q    AE+L+ +M+ +GL P   T++  I A+     +     + 
Sbjct: 223 RVAYNTVISSLCGEGQTVE-AEKLVEKMREVGLSPDIVTFNCRIAALCKSGQILEASRIF 281

Query: 352 KIMQ---QNNLKPQDSTIATLSVE--CSKALELDLAEALLDQI--SRCTNPKPFSAFLAA 404
           + MQ   +  L   ++    L +E  CS+ +  + A A+ D +  S   + + ++ ++  
Sbjct: 282 RDMQIDEEMGLPKPNTVTYNLMLEGFCSEGM-FEEARAIFDSMKNSETLSLRSYNIWMLG 340

Query: 405 CDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINA 463
                K   A  I  +M +K ++P++ +Y +L      V+   + G MFS   S   +  
Sbjct: 341 LVRSGKLLEAHLILNEMAEKNIKPNLYSYNIL------VHGLCKYG-MFSDARSILGL-- 391

Query: 464 IEMDMARNNIQHSHISMKNLL-------KALGAEGMIRELIQYFCDSKTPLGTPTYNTVL 516
               M  + +    ++   LL       K L A  ++RE+IQ  C         T N +L
Sbjct: 392 ----MRESGVAPDTVTYSTLLHGYCRRGKILEANYVLREMIQVGCFPNMY----TCNILL 443

Query: 517 HSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGF- 575
           HSL +   +  A ++ + M   G   +  T N MI+          A  +VS M   G  
Sbjct: 444 HSLWKEGRASEAEDLLQMMNERGYGLDNVTCNTMINGLCKAGNLDKAIEIVSGMWTRGSA 503

Query: 576 ----------------------YPQTMTYTALIKILLDYGDFDEA-LNLLDLVSLEGIPH 612
                                  P ++TY  +I  L   G  DEA   LL+++  +  P 
Sbjct: 504 SLGNLGNSFIDLFDIRNNGKKCLPDSITYATIIGGLCKVGRVDEAKKKLLEMIGKKLSP- 562

Query: 613 DVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
           D L+++T +   C++G++     ++++M +        T + +  G
Sbjct: 563 DSLIFDTFIYNYCKQGKLSSAFRVLKEMEKKGCNKSLRTYNSLIQG 608



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/181 (20%), Positives = 76/181 (41%), Gaps = 5/181 (2%)

Query: 476 SHISMKNLLKALGAEGMIRELIQYF--CDSKTPLGTPT---YNTVLHSLVEAQESHRAME 530
           +H S  +L++ L   G++   I  F     + P   P    YN +    ++       + 
Sbjct: 80  AHPSGFSLVRTLADLGLLENAISQFRSLRDRFPHDPPPISFYNLLFRCSLKESRVDCVIW 139

Query: 531 IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590
           ++K M    + P   T+N++I     +   ++A  +   M   G  P   +   L++   
Sbjct: 140 LYKDMAVAKVKPQTYTFNLLISALCEMGYLENAREVFDKMSEKGCKPNEFSLGILVRGYC 199

Query: 591 DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650
             G     ++LLD +   G   + + YNT++   C +G+    E ++E+M +  + PD  
Sbjct: 200 RAGLHSHGIDLLDEMRSSGALPNRVAYNTVISSLCGEGQTVEAEKLVEKMREVGLSPDIV 259

Query: 651 T 651
           T
Sbjct: 260 T 260


>gi|22128589|gb|AAM52340.1| fertility restorer-like protein [Petunia x hybrida]
          Length = 591

 Score = 79.0 bits (193), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 131/294 (44%), Gaps = 31/294 (10%)

Query: 379 LDLAEALLDQISRCTNPKP----FSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYEL 434
           LD A +L  Q+ R T P P    FS  L A   M      + +F ++  KLR  I  +E 
Sbjct: 53  LDDAFSLFRQMVR-TKPLPSVASFSKLLKAMVHMKHYSSVVSLFREI-HKLR--IPVHEF 108

Query: 435 LFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIR 494
           + S+  N         +  + D    + AI     +  I ++ ++   L++ L AE  ++
Sbjct: 109 ILSIVVNSCC------LMHRTDLGFSVLAIHF---KKGIPYNEVTFTTLIRGLFAENKVK 159

Query: 495 ELIQYF--------CDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAAT 546
           + +  F        C+    +    Y TV++ L +   + +A ++ + M+     PN  T
Sbjct: 160 DAVHLFKKLVRENICEPNEVM----YGTVMNGLCKKGHTQKAFDLLRLMEQGSTKPNTRT 215

Query: 547 YNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNL-LDLV 605
           Y I+ID          A++L++ M +    P   TY+ LI  L     ++    L L+++
Sbjct: 216 YTIVIDAFCKDGMLDGATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRTLFLEMI 275

Query: 606 SLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
            L   P +V  +N+++   C++G+++  E I+  M +  V PD  T + +  GY
Sbjct: 276 HLNIYP-NVCTFNSVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGY 328



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 90/393 (22%), Positives = 159/393 (40%), Gaps = 25/393 (6%)

Query: 304 GRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQD 363
           G TQ    A  L+  M+    +P++ TY   I A   D  L     +L  M+Q ++ P  
Sbjct: 192 GHTQK---AFDLLRLMEQGSTKPNTRTYTIVIDAFCKDGMLDGATSLLNEMKQKSIPPDI 248

Query: 364 STIATL-SVECSKALELDLAEALLDQISRCTNPK--PFSAFLAACDTMDKPERAIKIFAK 420
            T +TL    C  +   ++    L+ I     P    F++ +       K E A +I   
Sbjct: 249 FTYSTLIDALCKLSQWENVRTLFLEMIHLNIYPNVCTFNSVIDGLCKEGKVEDAEEIMRY 308

Query: 421 MRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHIS 479
           M +K + PD+ TY ++   +G          +  QVD A+ I      M   +I+   IS
Sbjct: 309 MIEKGVDPDVITYNMIIDGYG----------LRGQVDRAREIFD---SMINKSIEPDIIS 355

Query: 480 MKNLLKALGAEGMIRELIQYFCDSKTPLGTP----TYNTVLHSLVEAQESHRAMEIFKQM 535
              L+     +  I E +Q  C   +  G      T N +LH L E   +  A   F +M
Sbjct: 356 YNILINGYARQKKIDEAMQ-VCREISQKGLKPSIVTCNVLLHGLFELGRTKSAQNFFDEM 414

Query: 536 KTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDF 595
            + G  P+  T+  ++         + A +    + R         YTA+I  L   G  
Sbjct: 415 LSAGHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVIDGLCKNGKL 474

Query: 596 DEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFV 655
           D+A    + + L G+  DV+ Y  ++   C++G +D  + ++ +M  N    D  T + +
Sbjct: 475 DKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLADNRTYNVI 534

Query: 656 FSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLE 688
             G++     +     L+ ++ +    E +T+E
Sbjct: 535 VRGFLRSNKVSEMKAFLEEIAGKSFSFEAATVE 567



 Score = 66.6 bits (161), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 78/407 (19%), Positives = 163/407 (40%), Gaps = 41/407 (10%)

Query: 281 IPLNALPVMKVLRWSFS-----DVIHACGRTQNSGLAE--QLMLQMQSLGLQPSSHTYDG 333
           IP N +    ++R  F+     D +H   +     + E  ++M      GL    HT   
Sbjct: 138 IPYNEVTFTTLIRGLFAENKVKDAVHLFKKLVRENICEPNEVMYGTVMNGLCKKGHTQKA 197

Query: 334 FIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT 393
           F              ++L++M+Q + KP   T   +     K   LD A +LL+++ + +
Sbjct: 198 F--------------DLLRLMEQGSTKPNTRTYTIVIDAFCKDGMLDGATSLLNEMKQKS 243

Query: 394 NPK---PFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEG 449
            P     +S  + A   + + E    +F +M    + P++ T+  +      ++   +EG
Sbjct: 244 IPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNIYPNVCTFNSV------IDGLCKEG 297

Query: 450 NMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMI---RELIQYFCDSKTP 506
               +V+ A+ I      M    +    I+   ++   G  G +   RE+     +    
Sbjct: 298 ----KVEDAEEIMRY---MIEKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSMINKSIE 350

Query: 507 LGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASAL 566
               +YN +++     ++   AM++ +++   G+ P+  T N+++     +   KSA   
Sbjct: 351 PDIISYNILINGYARQKKIDEAMQVCREISQKGLKPSIVTCNVLLHGLFELGRTKSAQNF 410

Query: 567 VSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE 626
              M+  G  P   T+  L+      G  +EA++    +       ++ +Y  ++   C+
Sbjct: 411 FDEMLSAGHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVIDGLCK 470

Query: 627 KGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
            G++D      E++    + PD  T   + SGY   G  + A + L+
Sbjct: 471 NGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLR 517



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 75/171 (43%), Gaps = 1/171 (0%)

Query: 506 PLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGI-PPNAATYNIMIDCCSIIRCFKSAS 564
           P    T+ T++  L    +   A+ +FK++    I  PN   Y  +++        + A 
Sbjct: 139 PYNEVTFTTLIRGLFAENKVKDAVHLFKKLVRENICEPNEVMYGTVMNGLCKKGHTQKAF 198

Query: 565 ALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKA 624
            L+ +M +    P T TYT +I      G  D A +LL+ +  + IP D+  Y+T++   
Sbjct: 199 DLLRLMEQGSTKPNTRTYTIVIDAFCKDGMLDGATSLLNEMKQKSIPPDIFTYSTLIDAL 258

Query: 625 CEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
           C+  + + +  +  +M    + P+  T + V  G    G    A E ++ +
Sbjct: 259 CKLSQWENVRTLFLEMIHLNIYPNVCTFNSVIDGLCKEGKVEDAEEIMRYM 309


>gi|326500244|dbj|BAK06211.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 600

 Score = 79.0 bits (193), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 90/396 (22%), Positives = 173/396 (43%), Gaps = 37/396 (9%)

Query: 279 IPIP-----LNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQS----LGLQPSSH 329
           +P+P     L+ALP ++    S++ V+ A  R Q    A   +L++ S    L  +P++ 
Sbjct: 38  LPLPESPALLSALPSVRDA-VSYNTVLAALCR-QGCLDAALFLLRVMSHEPRLASRPNAI 95

Query: 330 TYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI 389
           +Y   +RA+ +DR     + +L+ MQ   ++P   T  TL      A ++D A  LL+++
Sbjct: 96  SYTTLMRALCADRRAAQAVGLLRSMQDCGVRPDVVTYGTLIRGLCDAADVDTAVELLNEM 155

Query: 390 SRC---TNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAP 445
                  N   +S  L       + E   K+F +M  + + PD+  Y  L          
Sbjct: 156 CESGIEPNVVVYSCLLHGYCKTGRWESVGKVFEEMSGRGIEPDVVMYTALIDSLCR---- 211

Query: 446 YEEGNMFSQVDSAKRINAIEMDM-ARNNIQHSHISMKNLLKALGAEGMIRE---LIQYFC 501
                   +V  A R+    MDM     ++ + ++   L+ ++  EG +RE   L +   
Sbjct: 212 ------HGKVKKAARV----MDMMTERGLEPNVVTYNVLINSMCKEGSVREALDLRKNMS 261

Query: 502 DSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQM--KTCGIPPNAATYNIMIDCCSIIRC 559
           +        TYNT++  L    E   AM + ++M      + P+  T+N +I     I  
Sbjct: 262 EKGVQPDVVTYNTLITGLSSVLEMDEAMALLEEMMQGETRVRPDLMTFNSVIHGLCKIGW 321

Query: 560 FKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNT 619
            + A  + +MM  +G     + +  LI  LL      +A+ L+D ++  G+  D   Y+ 
Sbjct: 322 MRQALQVRAMMAENGCRCNLVAFNLLIGGLLRVHKVKKAMELMDEMASSGLQPDSFTYSI 381

Query: 620 ILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFV 655
           ++   C+  +++  E  + +M    ++P+P   H++
Sbjct: 382 LINGFCKMRQVERAESYLSEMRHQGMEPEP--VHYI 415



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 86/185 (46%), Gaps = 5/185 (2%)

Query: 495 ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCC 554
           EL+   C+S        Y+ +LH   +        ++F++M   GI P+   Y  +ID  
Sbjct: 150 ELLNEMCESGIEPNVVVYSCLLHGYCKTGRWESVGKVFEEMSGRGIEPDVVMYTALIDSL 209

Query: 555 SIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDV 614
                 K A+ ++ MM   G  P  +TY  LI  +   G   EAL+L   +S +G+  DV
Sbjct: 210 CRHGKVKKAARVMDMMTERGLEPNVVTYNVLINSMCKEGSVREALDLRKNMSEKGVQPDV 269

Query: 615 LLYNTILKKACEKGRIDVIEFIIEQMHQN--KVQPDPSTCHFVFSGYVNCGFHNSAMEAL 672
           + YNT++        +D    ++E+M Q   +V+PD  T + V  G    G+     +AL
Sbjct: 270 VTYNTLITGLSSVLEMDEAMALLEEMMQGETRVRPDLMTFNSVIHGLCKIGWMR---QAL 326

Query: 673 QVLSM 677
           QV +M
Sbjct: 327 QVRAM 331



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 79/354 (22%), Positives = 146/354 (41%), Gaps = 58/354 (16%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A ++M  M   GL+P+  TY+  I ++  +  +R  +++ K M +  ++P   T  TL  
Sbjct: 218 AARVMDMMTERGLEPNVVTYNVLINSMCKEGSVREALDLRKNMSEKGVQPDVVTYNTLIT 277

Query: 372 ECSKALELDLAEALLDQI-----------------------------------------S 390
             S  LE+D A ALL+++                                          
Sbjct: 278 GLSSVLEMDEAMALLEEMMQGETRVRPDLMTFNSVIHGLCKIGWMRQALQVRAMMAENGC 337

Query: 391 RCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEG 449
           RC N   F+  +     + K ++A+++  +M    L+PD  TY +L              
Sbjct: 338 RC-NLVAFNLLIGGLLRVHKVKKAMELMDEMASSGLQPDSFTYSILI------------- 383

Query: 450 NMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYF--CDSKTPL 507
           N F ++   +R  +   +M    ++   +    LLKA+  +GM+ +    F   D    L
Sbjct: 384 NGFCKMRQVERAESYLSEMRHQGMEPEPVHYIPLLKAMCDQGMMGQARDLFNEMDRNCKL 443

Query: 508 GTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALV 567
               Y+T++H   ++ E   A E  K M   G+ P+A TY+I I+  +      +A  ++
Sbjct: 444 DAAAYSTMIHGAFKSGEKKIAEEFLKDMIDEGLIPDAVTYSIPINMFAKSGDLAAAERVL 503

Query: 568 SMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTIL 621
             M   GF P    + +LI+     GD ++ L L   ++ + +  D  + +TI+
Sbjct: 504 KQMTASGFVPDVAVFDSLIQGYGAKGDTEKILELTREMTAKDVALDPKIISTIV 557



 Score = 75.9 bits (185), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 82/431 (19%), Positives = 183/431 (42%), Gaps = 44/431 (10%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           S++ ++ A    + +  A  L+  MQ  G++P   TY   IR +     +   +E+L  M
Sbjct: 96  SYTTLMRALCADRRAAQAVGLLRSMQDCGVRPDVVTYGTLIRGLCDAADVDTAVELLNEM 155

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQIS-RCTNPKP--FSAFLAACDTMDKP 411
            ++ ++P     + L     K    +    + +++S R   P    ++A + +     K 
Sbjct: 156 CESGIEPNVVVYSCLLHGYCKTGRWESVGKVFEEMSGRGIEPDVVMYTALIDSLCRHGKV 215

Query: 412 ERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRIN-------- 462
           ++A ++   M ++ L P++ TY +L      +N+  +EG++   +D  K ++        
Sbjct: 216 KKAARVMDMMTERGLEPNVVTYNVL------INSMCKEGSVREALDLRKNMSEKGVQPDV 269

Query: 463 ------------AIEMDMA----------RNNIQHSHISMKNLLKALGAEGMIRELIQY- 499
                        +EMD A             ++   ++  +++  L   G +R+ +Q  
Sbjct: 270 VTYNTLITGLSSVLEMDEAMALLEEMMQGETRVRPDLMTFNSVIHGLCKIGWMRQALQVR 329

Query: 500 --FCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSII 557
               ++        +N ++  L+   +  +AME+  +M + G+ P++ TY+I+I+    +
Sbjct: 330 AMMAENGCRCNLVAFNLLIGGLLRVHKVKKAMELMDEMASSGLQPDSFTYSILINGFCKM 389

Query: 558 RCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLY 617
           R  + A + +S M   G  P+ + Y  L+K + D G   +A +L + +       D   Y
Sbjct: 390 RQVERAESYLSEMRHQGMEPEPVHYIPLLKAMCDQGMMGQARDLFNEMD-RNCKLDAAAY 448

Query: 618 NTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSM 677
           +T++  A + G   + E  ++ M    + PD  T     + +   G   +A   L+ ++ 
Sbjct: 449 STMIHGAFKSGEKKIAEEFLKDMIDEGLIPDAVTYSIPINMFAKSGDLAAAERVLKQMTA 508

Query: 678 RMLCEEVSTLE 688
                +V+  +
Sbjct: 509 SGFVPDVAVFD 519



 Score = 45.8 bits (107), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 31/139 (22%), Positives = 64/139 (46%), Gaps = 3/139 (2%)

Query: 543 NAATYNIMIDCCSIIRCFKSASALVSMMV---RDGFYPQTMTYTALIKILLDYGDFDEAL 599
           +A +YN ++       C  +A  L+ +M    R    P  ++YT L++ L       +A+
Sbjct: 55  DAVSYNTVLAALCRQGCLDAALFLLRVMSHEPRLASRPNAISYTTLMRALCADRRAAQAV 114

Query: 600 NLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
            LL  +   G+  DV+ Y T+++  C+   +D    ++ +M ++ ++P+      +  GY
Sbjct: 115 GLLRSMQDCGVRPDVVTYGTLIRGLCDAADVDTAVELLNEMCESGIEPNVVVYSCLLHGY 174

Query: 660 VNCGFHNSAMEALQVLSMR 678
              G   S  +  + +S R
Sbjct: 175 CKTGRWESVGKVFEEMSGR 193


>gi|326513116|dbj|BAK06798.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 489

 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/290 (22%), Positives = 120/290 (41%), Gaps = 23/290 (7%)

Query: 398 FSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDS 457
           F++ L A        +A  +   + ++  PD+ TY  L              + + +   
Sbjct: 166 FNSLLDALGKSRHASKAASLVRALERRFPPDVVTYNTL-------------ADGWCRAKD 212

Query: 458 AKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFC--------DSKTPLGT 509
             R   +   MA + +  +  +   +LK     G I+    +F         D       
Sbjct: 213 TSRALDLLRQMAESGVTPTKTTYNIILKGFFRAGQIQHAWNFFLQMKKRGAKDESCKPDI 272

Query: 510 PTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSM 569
            +Y T++H L  A +  +A ++F +M   G  P+ ATYN +I         + A  +   
Sbjct: 273 VSYTTIIHGLGVAGQLDKARKLFDEMSKEGCTPSVATYNALIQVICKKGNVEDAVTVFDD 332

Query: 570 MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
           MVR  + P  +TYT LI+ L   G  D A+ L++ +  EG    V  YN +++ + E+G 
Sbjct: 333 MVRKDYMPNVVTYTVLIRGLCHVGKIDRAMKLMERMKGEGCEPVVQTYNVLIRYSFEEGE 392

Query: 630 IDVIEFIIEQMHQNK-VQPDPSTCHFVFSG-YVNCGFHNSAMEALQVLSM 677
           I+    + E+M + +   P+  T + + S  +V     + A  A  V+ M
Sbjct: 393 IEKALCLFERMSKGEDCLPNQDTYNIIISAMFVRKRAEDMATAARMVMEM 442


>gi|255583688|ref|XP_002532598.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527686|gb|EEF29795.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 553

 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 85/380 (22%), Positives = 148/380 (38%), Gaps = 64/380 (16%)

Query: 294 WSFSD-----VIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLR--N 346
           W F++     +I A G+  N   AE+++  M  +G  P+  ++   + A    RG R  N
Sbjct: 136 WDFNEMDSLMLITAYGKQGNFSAAEKVLSYMNKMGYVPNVVSHTALMEAY--GRGARYNN 193

Query: 347 GMEVLKIMQQNNLKPQDSTIATL---SVECSKALELD-LAEALLDQISRCTNP--KPFSA 400
              + + MQ +  KP   T   +    VE +K  E + + E LLD+      P  K F  
Sbjct: 194 AEAIFRRMQSSGPKPSAVTYQIILKNFVEGNKFKEAEEVFETLLDEEKSPLKPDQKMFHM 253

Query: 401 FLAACDTMDKPERAIKIFAKMRQKLRP-DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAK 459
            +         E+A +IFA M Q+  P    TY  L S   N                 K
Sbjct: 254 MIYMHRKAGNYEKARQIFALMTQRGVPKSTVTYNSLMSFETNY----------------K 297

Query: 460 RINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSL 519
            ++ I   M R+ +Q   IS   L+ A G                               
Sbjct: 298 EVSKIYDQMQRSGLQPDVISYALLINAYG------------------------------- 326

Query: 520 VEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQT 579
            +A+    A+ +F++M   G+ P    YNI++D  +I    + A  +   M RD + P  
Sbjct: 327 -KARREDEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQARTVFKSMRRDRYTPDL 385

Query: 580 MTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQ 639
            +YT ++   ++  D   A N  + +  +G+  +V+ Y  ++K   +   +D +    E+
Sbjct: 386 CSYTTMLSAYVNASDMAGAENFFNRLKQDGLEPNVVTYGALIKGYAKTNNLDKMMEKYEE 445

Query: 640 MHQNKVQPDPSTCHFVFSGY 659
           M    V+ + +    +   Y
Sbjct: 446 MQLRGVKANQTIFTTIMDAY 465



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 73/334 (21%), Positives = 130/334 (38%), Gaps = 20/334 (5%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           S + ++ A GR      AE +  +MQS G +PS+ TY   ++  V     +   EV + +
Sbjct: 177 SHTALMEAYGRGARYNNAEAIFRRMQSSGPKPSAVTYQIILKNFVEGNKFKEAEEVFETL 236

Query: 355 ---QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKP 411
              +++ LKP       +     KA   + A  +   +++   PK    + +        
Sbjct: 237 LDEEKSPLKPDQKMFHMMIYMHRKAGNYEKARQIFALMTQRGVPKSTVTYNSLMSFETNY 296

Query: 412 ERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           +   KI+ +M R  L+PD+ +Y LL + +G      E   +F ++  A            
Sbjct: 297 KEVSKIYDQMQRSGLQPDVISYALLINAYGKARREDEALAVFEEMLDA------------ 344

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHR 527
             ++ +H +   LL A    GM+ +    F   +    TP   +Y T+L + V A +   
Sbjct: 345 -GVRPTHKAYNILLDAFAISGMVEQARTVFKSMRRDRYTPDLCSYTTMLSAYVNASDMAG 403

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A   F ++K  G+ PN  TY  +I   +              M   G       +T ++ 
Sbjct: 404 AENFFNRLKQDGLEPNVVTYGALIKGYAKTNNLDKMMEKYEEMQLRGVKANQTIFTTIMD 463

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTIL 621
                 DF  A+     +   G+P D    N +L
Sbjct: 464 AYGKNKDFGSAVIWYKEMEQYGVPPDQKAKNILL 497



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 71/163 (43%), Gaps = 5/163 (3%)

Query: 502 DSKTPL--GTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRC 559
           + K+PL      ++ +++   +A    +A +IF  M   G+P +  TYN ++   S    
Sbjct: 239 EEKSPLKPDQKMFHMMIYMHRKAGNYEKARQIFALMTQRGVPKSTVTYNSLM---SFETN 295

Query: 560 FKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNT 619
           +K  S +   M R G  P  ++Y  LI         DEAL + + +   G+      YN 
Sbjct: 296 YKEVSKIYDQMQRSGLQPDVISYALLINAYGKARREDEALAVFEEMLDAGVRPTHKAYNI 355

Query: 620 ILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNC 662
           +L      G ++    + + M +++  PD  +   + S YVN 
Sbjct: 356 LLDAFAISGMVEQARTVFKSMRRDRYTPDLCSYTTMLSAYVNA 398



 Score = 47.4 bits (111), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 64/285 (22%), Positives = 120/285 (42%), Gaps = 33/285 (11%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI-- 353
           F  +I+   +  N   A Q+   M   G+  S+ TY+  +          N  EV KI  
Sbjct: 251 FHMMIYMHRKAGNYEKARQIFALMTQRGVPKSTVTYNSLMSFET------NYKEVSKIYD 304

Query: 354 -MQQNNLKPQDSTIATLSVECSKALELDLA----EALLDQISRCTNPKPFSAFLAACDTM 408
            MQ++ L+P   + A L     KA   D A    E +LD   R T+ K ++  L A    
Sbjct: 305 QMQRSGLQPDVISYALLINAYGKARREDEALAVFEEMLDAGVRPTH-KAYNILLDAFAIS 363

Query: 409 DKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMD 467
              E+A  +F  MR+ +  PD+ +Y  + S + N +      N F         N ++ D
Sbjct: 364 GMVEQARTVFKSMRRDRYTPDLCSYTTMLSAYVNASDMAGAENFF---------NRLKQD 414

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHR 527
               N+    ++   L+K       + ++++ + + +   G     T+  ++++A   ++
Sbjct: 415 GLEPNV----VTYGALIKGYAKTNNLDKMMEKYEEMQL-RGVKANQTIFTTIMDAYGKNK 469

Query: 528 ----AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVS 568
               A+  +K+M+  G+PP+    NI++         K A+ +V 
Sbjct: 470 DFGSAVIWYKEMEQYGVPPDQKAKNILLSLAKTADEQKEANQMVG 514



 Score = 45.8 bits (107), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 36/171 (21%), Positives = 72/171 (42%), Gaps = 8/171 (4%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQM---KTCGIPPNAATYNIMIDCCSIIRCFKSASALV 567
           TY  +L + VE  +   A E+F+ +   +   + P+   +++MI        ++ A  + 
Sbjct: 212 TYQIILKNFVEGNKFKEAEEVFETLLDEEKSPLKPDQKMFHMMIYMHRKAGNYEKARQIF 271

Query: 568 SMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEK 627
           ++M + G    T+TY +L+    +Y    E   + D +   G+  DV+ Y  ++    + 
Sbjct: 272 ALMTQRGVPKSTVTYNSLMSFETNY---KEVSKIYDQMQRSGLQPDVISYALLINAYGKA 328

Query: 628 GRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678
            R D    + E+M    V+P     + +   +   G    A    +  SMR
Sbjct: 329 RREDEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQARTVFK--SMR 377


>gi|357458533|ref|XP_003599547.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488595|gb|AES69798.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 636

 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 108/461 (23%), Positives = 182/461 (39%), Gaps = 72/461 (15%)

Query: 321 SLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQN----NLKPQDSTIATLSVECSKA 376
           +LG      +Y   I  +      R  +++L+ +       N+   ++ I +L   C   
Sbjct: 166 ALGFHLDQFSYGTLINGLCKIGETRTALQMLRKIDGKLVKINVVMYNTIIDSL---CKHK 222

Query: 377 LELDLAEALLDQISRCTNPK--PFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYE 433
           L +D  E     I++  +P    FSA +     + + E A  +F +M  K + PD  T+ 
Sbjct: 223 LVIDAYELYSQMIAKKISPDVVTFSALIYGFCIVGQLEEAFGLFREMVLKNINPDYYTFN 282

Query: 434 LLFSLFGNVNAPYEEGNM-------------------------------FSQVDSAKRI- 461
           +L      V+A  +EGN+                                +QV+ AK + 
Sbjct: 283 IL------VDALCKEGNLKGAKNMLVVMMKEGVMPNVVTYSSLMDGYCLVNQVNKAKHVL 336

Query: 462 NAI-EMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLH 517
           N I +M  A N   HS+ +M N         M+ E +  F D +     P   TYN+++ 
Sbjct: 337 NTISQMGAAPN--AHSYCTMIN---GFCKIKMVDEALSLFNDMQFKGIAPDKVTYNSLID 391

Query: 518 SLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYP 577
            L ++     A E+  +M   G P N  TYN +ID          A ALV  +   G  P
Sbjct: 392 GLCKSGRISYAWELVDEMHDNGQPANIFTYNCLIDALCKNHHVDQAIALVKKIKDQGIQP 451

Query: 578 QTMTYTALIKILLDYGDFDEALNLL-DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFI 636
              T+  LI  L   G    A ++  DL+S +G   +   YN ++   C++G  D  E +
Sbjct: 452 DMYTFNILIYGLCKVGRLKNAQDVFQDLLS-KGYSVNAWTYNIMVNGLCKEGLFDEAEAL 510

Query: 637 IEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDFED 696
           + +M  N + PD  T    +   +   FH    E  + L   M+  +V    E      +
Sbjct: 511 LSKMDDNGIIPDAVT----YETLIQALFHKDENEKAEKLLREMIARDVVYALEGL----E 562

Query: 697 LIL-----AEDSEAESRILQFCEDSNENLAFTAALLQLRWC 732
           ++L     A+D E   +   +   +N      +A++QL  C
Sbjct: 563 MVLHLESEAKDQEKFGKKGYYAITTNLGQGLISAVVQLSLC 603



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 82/378 (21%), Positives = 159/378 (42%), Gaps = 31/378 (8%)

Query: 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
           ++S+  +I+   +   +  A Q++ ++    ++ +   Y+  I ++   + + +  E+  
Sbjct: 173 QFSYGTLINGLCKIGETRTALQMLRKIDGKLVKINVVMYNTIIDSLCKHKLVIDAYELYS 232

Query: 353 IMQQNNLKPQDSTIATLSVECSKALELDLAEALL-DQISRCTNPKPFSAFL---AACDTM 408
            M    + P   T + L        +L+ A  L  + + +  NP  ++  +   A C   
Sbjct: 233 QMIAKKISPDVVTFSALIYGFCIVGQLEEAFGLFREMVLKNINPDYYTFNILVDALCKEG 292

Query: 409 DKPERAIKIFAKMRQKLRPDIRTYELL---FSLFGNVNAPYEEGNMFSQVDSAKR----- 460
           +       +   M++ + P++ TY  L   + L   VN      N  SQ+ +A       
Sbjct: 293 NLKGAKNMLVVMMKEGVMPNVVTYSSLMDGYCLVNQVNKAKHVLNTISQMGAAPNAHSYC 352

Query: 461 --INA---IEM---------DMARNNIQHSHISMKNLLKALGAEGMIR---ELIQYFCDS 503
             IN    I+M         DM    I    ++  +L+  L   G I    EL+    D+
Sbjct: 353 TMINGFCKIKMVDEALSLFNDMQFKGIAPDKVTYNSLIDGLCKSGRISYAWELVDEMHDN 412

Query: 504 KTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI-DCCSIIRCFKS 562
             P    TYN ++ +L +     +A+ + K++K  GI P+  T+NI+I   C + R  K+
Sbjct: 413 GQPANIFTYNCLIDALCKNHHVDQAIALVKKIKDQGIQPDMYTFNILIYGLCKVGR-LKN 471

Query: 563 ASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILK 622
           A  +   ++  G+     TY  ++  L   G FDEA  LL  +   GI  D + Y T+++
Sbjct: 472 AQDVFQDLLSKGYSVNAWTYNIMVNGLCKEGLFDEAEALLSKMDDNGIIPDAVTYETLIQ 531

Query: 623 KACEKGRIDVIEFIIEQM 640
               K   +  E ++ +M
Sbjct: 532 ALFHKDENEKAEKLLREM 549



 Score = 60.1 bits (144), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 66/120 (55%), Gaps = 2/120 (1%)

Query: 512 YNTVLHSLVEAQESH--RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSM 569
           +N +L SLV++  +H   A+ + ++++  GI P+  T+NI+I+C   +     A ++++ 
Sbjct: 69  FNKILGSLVKSNNNHYPTAISLSRRLEFHGITPDIFTFNILINCYCHMAEMNFAFSMMAK 128

Query: 570 MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
           +++ G+ P T+T+  LIK L   G   EAL+  D V   G   D   Y T++   C+ G 
Sbjct: 129 ILKMGYEPDTITFNTLIKGLCLNGKVKEALHFHDHVLALGFHLDQFSYGTLINGLCKIGE 188


>gi|296089773|emb|CBI39592.3| unnamed protein product [Vitis vinifera]
          Length = 577

 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 104/233 (44%), Gaps = 6/233 (2%)

Query: 460 RINAIE---MDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYN 513
           RI  +E    +M R  I  + ++   ++  L   G  ++      D K    +P   TYN
Sbjct: 209 RIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYN 268

Query: 514 TVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRD 573
           T++    +A +  +A  + K+M    I PN  T+NI+ID         +A  +   M R 
Sbjct: 269 TIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQ 328

Query: 574 GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVI 633
           G  P  +TY +LI  L   G  DEAL L D +S  G+  +V+ YN ++   C+K  +   
Sbjct: 329 GLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEA 388

Query: 634 EFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
             +++ + +  + P+  T + +   Y   G  + A     ++    +C  VST
Sbjct: 389 REMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVST 441



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 80/353 (22%), Positives = 157/353 (44%), Gaps = 25/353 (7%)

Query: 310 GLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL 369
           G+ E +  +M    +  +  T+D  I  +      +   +V++ M+     P   T  T+
Sbjct: 211 GVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTI 270

Query: 370 SVECSKALELDLAEALLDQ-ISRCTNPKPFSAFLAACDTMDKPER---AIKIFAKM-RQK 424
                KA ++  A+ALL + +++  +P   + F    D   + E    A K+F +M RQ 
Sbjct: 271 IDGYCKAGKMFKADALLKEMVAKRIHPNEIT-FNILIDGFCRDENVTAAKKVFEEMQRQG 329

Query: 425 LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLL 484
           L+P++ TY  L      +N     G    ++D A     ++  M+   ++ + ++   L+
Sbjct: 330 LQPNVVTYNSL------INGLCSNG----KLDEAL---GLQDKMSGMGLKPNVVTYNALI 376

Query: 485 KALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIP 541
                + M++E  +   D       P   T+NT++ +  +A     A  +   M   G+ 
Sbjct: 377 NGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVC 436

Query: 542 PNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNL 601
           PN +TYN +I         K A  L   M  +G     +TY  L+  L   G+  +A+ L
Sbjct: 437 PNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRL 496

Query: 602 LDLVSL---EGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
           LD ++L   +G   +++ YN ++K  C KG+++    ++ +M +  + P+ +T
Sbjct: 497 LDEMTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNRTT 549



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 74/350 (21%), Positives = 142/350 (40%), Gaps = 23/350 (6%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +F  VI+   +      A  ++  M++ G  PS  TY+  I        +     +LK M
Sbjct: 231 TFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEM 290

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT---NPKPFSAFLAACDTMDKP 411
               + P + T   L     +   +  A+ + +++ R     N   +++ +    +  K 
Sbjct: 291 VAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKL 350

Query: 412 ERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           + A+ +  KM    L+P++ TY  L              N F +    K    +  D+ +
Sbjct: 351 DEALGLQDKMSGMGLKPNVVTYNALI-------------NGFCKKKMLKEAREMLDDIGK 397

Query: 471 NNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHR 527
             +  + I+   L+ A G  G + +   L     D+       TYN ++           
Sbjct: 398 RGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKE 457

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDC-CSIIRCFKSASAL--VSMMVRDGFYPQTMTYTA 584
           A ++ K+M+  G+  +  TYNI++D  C      K+   L  +++M + G     +TY  
Sbjct: 458 ARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMTLMEKKGRRANIVTYNV 517

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIE 634
           LIK   + G  +EA  LL+ +  +G+  +   Y+ +  +  EKG I  I+
Sbjct: 518 LIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTYDILRDEMMEKGFIPDID 567



 Score = 60.1 bits (144), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/167 (22%), Positives = 75/167 (44%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TYN++++ L    +   A+ +  +M   G+ PN  TYN +I+     +  K A  ++  +
Sbjct: 336 TYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDI 395

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
            + G  P  +T+  LI      G  D+A  L  ++   G+  +V  YN ++   C +G +
Sbjct: 396 GKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNV 455

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSM 677
                + ++M  N ++ D  T + +       G    A+  L  +++
Sbjct: 456 KEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMTL 502



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 73/355 (20%), Positives = 147/355 (41%), Gaps = 39/355 (10%)

Query: 106 VMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFL 165
           V   ++ M  + IG+N   + +++  LCK G  ++A +++  + + +G  P +  YN+ +
Sbjct: 213 VESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDM-KAWGFSPSVITYNTII 271

Query: 166 GACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSL 225
               K   M  A+  L  M ++ +  NE+T+  L+      +N++A  +++E+  +    
Sbjct: 272 DGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQ--- 328

Query: 226 SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNA 285
               L+  V ++  L +   +   L   + L        ++ S   L+ + +     +N 
Sbjct: 329 ---GLQPNVVTYNSLINGLCSNGKLDEALGLQ-------DKMSGMGLKPNVVTYNALING 378

Query: 286 LPVMKVLR------------------WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPS 327
               K+L+                   +F+ +I A G+      A  L   M   G+ P+
Sbjct: 379 FCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPN 438

Query: 328 SHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLD 387
             TY+  I     +  ++   ++ K M+ N LK    T   L     K  E   A  LLD
Sbjct: 439 VSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLD 498

Query: 388 QIS------RCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELL 435
           +++      R  N   ++  +       K E A ++  +M +K L P+  TY++L
Sbjct: 499 EMTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTYDIL 553



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/157 (22%), Positives = 72/157 (45%)

Query: 513 NTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVR 572
           N +L SLV+         ++K+M    I  N  T++++I+    +  F+ A  +V  M  
Sbjct: 198 NPMLVSLVKEGRIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKA 257

Query: 573 DGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDV 632
            GF P  +TY  +I      G   +A  LL  +  + I  + + +N ++   C    +  
Sbjct: 258 WGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTA 317

Query: 633 IEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAM 669
            + + E+M +  +QP+  T + + +G  + G  + A+
Sbjct: 318 AKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEAL 354


>gi|388499386|gb|AFK37759.1| unknown [Lotus japonicus]
          Length = 500

 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/329 (21%), Positives = 141/329 (42%), Gaps = 22/329 (6%)

Query: 351 LKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP---FSAFLAACDT 407
           L++++   +  +D+    +   C   L L+ AEA+  ++     P     +++++     
Sbjct: 186 LQLLEARCIPNEDTYALLIKAYCLSGL-LEKAEAVFVEMKNYGLPSSAVVYNSYINGLMK 244

Query: 408 MDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM 466
              P +A +IF +M R   +P   TY +L +L+G     +    +F+++ S K       
Sbjct: 245 GGNPNKAEEIFLRMKRDGCKPSTETYTMLINLYGKDGKSFMALKVFNEMLSHK------- 297

Query: 467 DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQ 523
              + NI     +   L+ A   EG+  +  + F   +     P   +YN ++ +   A 
Sbjct: 298 --CKPNI----CTYTALVNAFAREGLCEKAEEVFEQMQEAGLEPDVYSYNALMEAYSRAG 351

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
             + A EIF  M+  G  P+ A+YNI++D          A A+   M R G  P   ++ 
Sbjct: 352 FPYGAAEIFSLMQHMGCEPDRASYNILVDAYGRAGFLNDAEAVFEDMKRVGITPTMKSHM 411

Query: 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
            L+      G+  +  ++L+ +   G+  D  + N++L      G+   +E ++  M   
Sbjct: 412 VLLSAFSKTGNVSKCEDILNQMCKSGLKLDTFVLNSMLNLYGRLGQFGKMEEVLTVMENG 471

Query: 644 KVQPDPSTCHFVFSGYVNCGFHNSAMEAL 672
             + D ST + + + Y   GF +  ME L
Sbjct: 472 SCEADISTYNILINRYGQAGFIDK-MEGL 499



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 69/336 (20%), Positives = 133/336 (39%), Gaps = 58/336 (17%)

Query: 309 SGL---AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDST 365
           SGL   AE + ++M++ GL  S+  Y+ +I  ++         E+   M+++  KP   T
Sbjct: 210 SGLLEKAEAVFVEMKNYGLPSSAVVYNSYINGLMKGGNPNKAEEIFLRMKRDGCKPSTET 269

Query: 366 IATLSVECSKALELDLAEALLDQI--SRCT-NPKPFSAFLAACDTMDKPERAIKIFAKMR 422
              L     K  +  +A  + +++   +C  N   ++A + A       E+A ++F +M+
Sbjct: 270 YTMLINLYGKDGKSFMALKVFNEMLSHKCKPNICTYTALVNAFAREGLCEKAEEVFEQMQ 329

Query: 423 QK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMK 481
           +  L PD+ +Y  L   +     PY    +FS +         E D A  NI        
Sbjct: 330 EAGLEPDVYSYNALMEAYSRAGFPYGAAEIFSLMQHM----GCEPDRASYNI-------- 377

Query: 482 NLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIP 541
            L+ A G  G + +                                A  +F+ MK  GI 
Sbjct: 378 -LVDAYGRAGFLND--------------------------------AEAVFEDMKRVGIT 404

Query: 542 PNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI---LLDYGDFDEA 598
           P   ++ +++   S          +++ M + G    T    +++ +   L  +G  +E 
Sbjct: 405 PTMKSHMVLLSAFSKTGNVSKCEDILNQMCKSGLKLDTFVLNSMLNLYGRLGQFGKMEEV 464

Query: 599 LNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIE 634
           L +++  S E    D+  YN ++ +  + G ID +E
Sbjct: 465 LTVMENGSCEA---DISTYNILINRYGQAGFIDKME 497



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 90/216 (41%), Gaps = 4/216 (1%)

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFC---DSKTPLGTPTYNTVLHSLVEAQESH 526
           R++ +   I    L+ A G + + +E    +    +++      TY  ++ +   +    
Sbjct: 155 RSSFKQDVICYNLLIDAFGQKFLYKEAESTYLQLLEARCIPNEDTYALLIKAYCLSGLLE 214

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
           +A  +F +MK  G+P +A  YN  I+          A  +   M RDG  P T TYT LI
Sbjct: 215 KAEAVFVEMKNYGLPSSAVVYNSYINGLMKGGNPNKAEEIFLRMKRDGCKPSTETYTMLI 274

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646
            +    G    AL + + +       ++  Y  ++     +G  +  E + EQM +  ++
Sbjct: 275 NLYGKDGKSFMALKVFNEMLSHKCKPNICTYTALVNAFAREGLCEKAEEVFEQMQEAGLE 334

Query: 647 PDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCE 682
           PD  + + +   Y   GF   A E   ++   M CE
Sbjct: 335 PDVYSYNALMEAYSRAGFPYGAAEIFSLMQ-HMGCE 369



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 62/275 (22%), Positives = 108/275 (39%), Gaps = 23/275 (8%)

Query: 285 ALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGL 344
            LP   V+   ++  I+   +  N   AE++ L+M+  G +PS+ TY   I     D   
Sbjct: 227 GLPSSAVV---YNSYINGLMKGGNPNKAEEIFLRMKRDGCKPSTETYTMLINLYGKDGKS 283

Query: 345 RNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT-NPKPFS--AF 401
              ++V   M  +  KP   T   L    ++    + AE + +Q+      P  +S  A 
Sbjct: 284 FMALKVFNEMLSHKCKPNICTYTALVNAFAREGLCEKAEEVFEQMQEAGLEPDVYSYNAL 343

Query: 402 LAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKR 460
           + A      P  A +IF+ M+     PD  +Y +L   +G      +   +F        
Sbjct: 344 MEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNILVDAYGRAGFLNDAEAVFE------- 396

Query: 461 INAIEMDMARNNIQHSHISMKNLLKALGAEGMI---RELIQYFCDSKTPLGTPTYNTVLH 517
                 DM R  I  +  S   LL A    G +    +++   C S   L T   N++L+
Sbjct: 397 ------DMKRVGITPTMKSHMVLLSAFSKTGNVSKCEDILNQMCKSGLKLDTFVLNSMLN 450

Query: 518 SLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID 552
                 +  +  E+   M+      + +TYNI+I+
Sbjct: 451 LYGRLGQFGKMEEVLTVMENGSCEADISTYNILIN 485


>gi|255552808|ref|XP_002517447.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543458|gb|EEF44989.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 654

 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 80/340 (23%), Positives = 141/340 (41%), Gaps = 43/340 (12%)

Query: 384 ALLDQISRCTNPKP----FSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSL 438
           ALLD I+      P    ++  L       K + A  +F +MRQ+ L PD  TY  L + 
Sbjct: 119 ALLDWINEVARYSPSVFAYNVVLRNVLRAKKWDLAHGLFDEMRQRALSPDRYTYSTLITS 178

Query: 439 FGNVNAPYEEGNMFSQVDSAKRI--------NAIE---------------MDMARNNIQH 475
           FG     ++E   + Q     R+        N IE               M + R+ I  
Sbjct: 179 FGKAGM-FDESLFWLQQMEQDRVSGDLVLYSNLIELSRKLCDYSKAISIFMRLKRSGITP 237

Query: 476 SHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIF 532
             ++  +++   G   + RE   L+    +      T +Y+T+L   VE ++   A+ +F
Sbjct: 238 DLVAYNSMINVFGKARLFREARMLVHEMREVGVLPDTVSYSTLLSVYVENEKFVEALSVF 297

Query: 533 KQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDY 592
            +M       +  T NIMID    +   K A  L   M + G  P  ++Y  L+K+  + 
Sbjct: 298 AEMNEANCSLDLMTCNIMIDVYGQLDMVKEADRLFWSMRKMGIEPNVVSYNTLLKVYGEA 357

Query: 593 GDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTC 652
             F EA++L  L+  + I  +V+ YNT++K   +    +    ++++M +  ++P+  T 
Sbjct: 358 ELFGEAIHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEHEKATNLVQEMQKRGIEPNAITY 417

Query: 653 HFVFSGYVNCG-----------FHNSAMEALQVLSMRMLC 681
             + S +   G             +S +E  QVL   M+ 
Sbjct: 418 STIISIWGKAGKLDRAAMLFQKLRSSGVEIDQVLYQTMIV 457



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 69/343 (20%), Positives = 137/343 (39%), Gaps = 14/343 (4%)

Query: 326 PSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEAL 385
           PS   Y+  +R ++  +       +   M+Q  L P   T +TL     KA   D +   
Sbjct: 132 PSVFAYNVVLRNVLRAKKWDLAHGLFDEMRQRALSPDRYTYSTLITSFGKAGMFDESLFW 191

Query: 386 LDQISR---CTNPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGN 441
           L Q+ +     +   +S  +     +    +AI IF ++ R  + PD+  Y  + ++FG 
Sbjct: 192 LQQMEQDRVSGDLVLYSNLIELSRKLCDYSKAISIFMRLKRSGITPDLVAYNSMINVFGK 251

Query: 442 VNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFC 501
               + E  M   V   + +  +   ++ + +   ++  +  ++AL     + E      
Sbjct: 252 ARL-FREARML--VHEMREVGVLPDTVSYSTLLSVYVENEKFVEALSVFAEMNE------ 302

Query: 502 DSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFK 561
            +   L   T N ++    +      A  +F  M+  GI PN  +YN ++        F 
Sbjct: 303 -ANCSLDLMTCNIMIDVYGQLDMVKEADRLFWSMRKMGIEPNVVSYNTLLKVYGEAELFG 361

Query: 562 SASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTIL 621
            A  L  +M R       +TY  +IKI     + ++A NL+  +   GI  + + Y+TI+
Sbjct: 362 EAIHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEHEKATNLVQEMQKRGIEPNAITYSTII 421

Query: 622 KKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGF 664
               + G++D    + +++  + V+ D      +   Y   G 
Sbjct: 422 SIWGKAGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERAGL 464



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 76/336 (22%), Positives = 142/336 (42%), Gaps = 22/336 (6%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           ++++ V+    R +   LA  L  +M+   L P  +TY   I +          +  L+ 
Sbjct: 135 FAYNVVLRNVLRAKKWDLAHGLFDEMRQRALSPDRYTYSTLITSFGKAGMFDESLFWLQQ 194

Query: 354 MQQNNLKPQDSTIATLSVECSKAL-ELDLAEALLDQISRCTNPKPFSAFLAACDTMDKP- 411
           M+Q+ +   D  + +  +E S+ L +   A ++  ++ R        A+ +  +   K  
Sbjct: 195 MEQDRVS-GDLVLYSNLIELSRKLCDYSKAISIFMRLKRSGITPDLVAYNSMINVFGKAR 253

Query: 412 --ERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
               A  +  +MR+  + PD  +Y  L S++       E  ++F++++ A       +D+
Sbjct: 254 LFREARMLVHEMREVGVLPDTVSYSTLLSVYVENEKFVEALSVFAEMNEAN----CSLDL 309

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQES 525
              NI         ++   G   M++E  + F   +     P   +YNT+L    EA+  
Sbjct: 310 MTCNI---------MIDVYGQLDMVKEADRLFWSMRKMGIEPNVVSYNTLLKVYGEAELF 360

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
             A+ +F+ M+   I  N  TYN MI         + A+ LV  M + G  P  +TY+ +
Sbjct: 361 GEAIHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEHEKATNLVQEMQKRGIEPNAITYSTI 420

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTIL 621
           I I    G  D A  L   +   G+  D +LY T++
Sbjct: 421 ISIWGKAGKLDRAAMLFQKLRSSGVEIDQVLYQTMI 456



 Score = 44.3 bits (103), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 53/278 (19%), Positives = 113/278 (40%), Gaps = 22/278 (7%)

Query: 299 VIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNN 358
           +I   G+      A++L   M+ +G++P+  +Y+  ++           + + ++MQ+  
Sbjct: 315 MIDVYGQLDMVKEADRLFWSMRKMGIEPNVVSYNTLLKVYGEAELFGEAIHLFRLMQRKE 374

Query: 359 LKPQDSTIATLSVECSKALELDLAEALLDQISRC---TNPKPFSAFLAACDTMDKPERAI 415
           ++    T  T+     K+LE + A  L+ ++ +     N   +S  ++      K +RA 
Sbjct: 375 IEQNVVTYNTMIKIYGKSLEHEKATNLVQEMQKRGIEPNAITYSTIISIWGKAGKLDRAA 434

Query: 416 KIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQH 475
            +F K+R          E+   L+  +   YE   +   V  AKR+     D+   +I  
Sbjct: 435 MLFQKLRSS------GVEIDQVLYQTMIVAYERAGL---VAHAKRLLH---DLKCPDI-- 480

Query: 476 SHISMKNLLKALGAEGMIRELIQYF---CDSKTPLGTPTYNTVLHSLVEAQESHRAMEIF 532
             I     +K L   G I E    F    D+        +  ++      +     +E+F
Sbjct: 481 --IPRDTAIKILARAGRIEEATWVFRQAFDAGEVKDISVFRCMIELFSRNKRPANVVEVF 538

Query: 533 KQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           ++M+  G  P++    ++++    +R F+ A A+   M
Sbjct: 539 EKMRGAGYFPDSDVIALVLNAYGKLREFEKADAVYREM 576


>gi|356529507|ref|XP_003533332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 88/417 (21%), Positives = 164/417 (39%), Gaps = 45/417 (10%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           F+ ++ +  + ++   A  L  +++  G+QP   T +  I        +  G  VL  + 
Sbjct: 62  FNKILDSFAKIKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGFSVLAKIL 121

Query: 356 QNNLKPQDSTIATL------SVECSKALELD---LAEAL-LDQISRCTNPKPFSAFLAAC 405
           +   +P   T  TL        + +KAL      LA+ +  DQ+S       +   +   
Sbjct: 122 KRGYQPHTITFTTLIKGLCLKGQVNKALHFHDKLLAQGIKFDQVS-------YGTLINGV 174

Query: 406 DTMDKPERAIKIFAKMRQKL-RPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINA- 463
             +     AIK+  K+  +L +P++  Y  +           E   +FS++ +AK I+A 
Sbjct: 175 CKIGDTRGAIKLVRKIDGRLTKPNVEMYNTIIDALCKYQLVSEAYGLFSEM-TAKGISAD 233

Query: 464 ----------------------IEMDMARNNIQHSHISMKNLLKALGAEGMIRE---LIQ 498
                                 +  +M    I  +  +   L+ AL  EG ++E   ++ 
Sbjct: 234 VVTYTTLIYGFCIASKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKNVLA 293

Query: 499 YFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIR 558
               +       TY+T++       E  +A  +F  M   G+ P+  +Y I+I+     +
Sbjct: 294 VMLKACVKPDVITYSTLMDGYFLVYELKKAQHVFNAMSLMGVTPDVHSYTILINGFCKNK 353

Query: 559 CFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYN 618
               A  L   M +    P  +TY++LI  L   G      +L+D +   GIP +V+ YN
Sbjct: 354 MVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDRGIPANVITYN 413

Query: 619 TILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
           +++   C+ G +D    +  +M    ++P   T   +  G    G    A EA Q L
Sbjct: 414 SLIDGLCKNGHLDRAIALFNKMKDQGIRPCSFTFTILLDGLCKGGRLKDAQEAFQDL 470



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 85/401 (21%), Positives = 165/401 (41%), Gaps = 26/401 (6%)

Query: 289 MKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGM 348
           +K  + S+  +I+   +  ++  A +L+ ++     +P+   Y+  I A+   + +    
Sbjct: 160 IKFDQVSYGTLINGVCKIGDTRGAIKLVRKIDGRLTKPNVEMYNTIIDALCKYQLVSEAY 219

Query: 349 EVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPK--PFSAFLAAC 405
            +   M    +     T  TL      A +L  A  LL++ + +  NP    ++  + A 
Sbjct: 220 GLFSEMTAKGISADVVTYTTLIYGFCIASKLKEAIGLLNEMVLKTINPNVYTYNILVDAL 279

Query: 406 DTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAI 464
               K + A  + A M +  ++PD+ TY  L   +  V    +  ++F         NA+
Sbjct: 280 CKEGKVKEAKNVLAVMLKACVKPDVITYSTLMDGYFLVYELKKAQHVF---------NAM 330

Query: 465 EMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCD----SKTPLGTPTYNTVLHSLV 520
            + M      HS+     L+       M+ E +  F +    +  P G  TY++++  L 
Sbjct: 331 SL-MGVTPDVHSYTI---LINGFCKNKMVDEALNLFKEMHQKNMVP-GIVTYSSLIDGLC 385

Query: 521 EAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTM 580
           ++       ++  +M+  GIP N  TYN +ID          A AL + M   G  P + 
Sbjct: 386 KSGRISYVWDLIDEMRDRGIPANVITYNSLIDGLCKNGHLDRAIALFNKMKDQGIRPCSF 445

Query: 581 TYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQM 640
           T+T L+  L   G   +A      +  +G   DV  YN ++   C++G ++    ++ +M
Sbjct: 446 TFTILLDGLCKGGRLKDAQEAFQDLLTKGYHLDVYKYNVMINGHCKQGLLEEALTMLSKM 505

Query: 641 HQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLC 681
            +N   P+  T    F   +N  F     +  + L  +M+C
Sbjct: 506 EENGCVPNAVT----FDIIINALFKKDENDKAEKLLRQMIC 542


>gi|297746072|emb|CBI16128.3| unnamed protein product [Vitis vinifera]
          Length = 563

 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 74/341 (21%), Positives = 142/341 (41%), Gaps = 27/341 (7%)

Query: 344 LRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEAL---LDQISRCTNPKPFSA 400
           L  G EVL  M++  L P      TL   C K  +++  + L   + ++    N   ++ 
Sbjct: 180 LDKGFEVLGQMEEMGLSPNVVVYTTLIDGCCKNGDIERGKQLFYKMGELDVVANQYTYTV 239

Query: 401 FLAACDTMDKPERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAK 459
            +     M   +  I+++ KM+   + P++ TY  +     N                 K
Sbjct: 240 LINGFFKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRCCN---------------DGK 284

Query: 460 RINAIEM--DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNT 514
             NA E+  +M    +  + ++   L+  L  E  + E  +  C  K    +P   +YNT
Sbjct: 285 LNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNT 344

Query: 515 VLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDG 574
           ++          +A  +F QMK+ G  P+ ATYNI+I   S  +     + +V  M   G
Sbjct: 345 LIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREMEARG 404

Query: 575 FYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIE 634
             P  +TYT L+  L+   + ++A  +   +   G+  D+ +Y  ++   C  G +    
Sbjct: 405 LSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEAS 464

Query: 635 FIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
            + + + +  ++P+    + +  GY   G   S+  AL++L
Sbjct: 465 KLFKSLDEMHLKPNDVIYNTMIYGYCKEG---SSYRALRLL 502



 Score = 69.7 bits (169), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 73/366 (19%), Positives = 155/366 (42%), Gaps = 18/366 (4%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           ++ +I  C +  +    +QL  +M  L +  + +TY   I         ++G+E+ + M+
Sbjct: 202 YTTLIDGCCKNGDIERGKQLFYKMGELDVVANQYTYTVLINGFFKMGLKKDGIELYEKMK 261

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKPE 412
              + P   T  ++   C    +L+ A  L D++       N   ++  +       +  
Sbjct: 262 LTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVL 321

Query: 413 RAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471
            A ++  +M R  L P++ +Y  L   + ++    +  ++F+Q+ S+ +       +A  
Sbjct: 322 EAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQ----SPSLATY 377

Query: 472 NIQHSHIS-MKNLLKALGAEGMIREL-IQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAM 529
           NI  +  S  KN   + G   M+RE+  +    SK      TY  ++ +LV +    +A 
Sbjct: 378 NILIAGFSEAKN---SAGVTDMVREMEARGLSPSKV-----TYTILMDALVRSDNIEKAF 429

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589
           +I+  M+  G+  +   Y ++I    ++   K AS L   +      P  + Y  +I   
Sbjct: 430 QIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSLDEMHLKPNDVIYNTMIYGY 489

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649
              G    AL LL  +   G+  +V  YN+ ++  C+  +    E +++ M +  ++P  
Sbjct: 490 CKEGSSYRALRLLKEMGENGMVPNVASYNSTIQILCKDEKWTEAEVLLKDMIELGLKPSI 549

Query: 650 STCHFV 655
           S  + +
Sbjct: 550 SIWNMI 555



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 101/520 (19%), Positives = 193/520 (37%), Gaps = 101/520 (19%)

Query: 86  GADDFFHILNYCARSPDPLFVMETWRMMEEKE--IGLNNKCYLLMMQALCKGGYLEEASN 143
           G++ F ++L    +S    F  + WR+  E +  + L+   + +M++  C+ GYL++   
Sbjct: 129 GSNTFNNLLILLIKSN---FFEKAWRVFNETKGNVKLDVYSFGIMIKGCCEVGYLDKGFE 185

Query: 144 LIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELL--- 200
           ++  + E  G+ P + VY + +  C K   +         M    V  N+ TYT L+   
Sbjct: 186 VLGQM-EEMGLSPNVVVYTTLIDGCCKNGDIERGKQLFYKMGELDVVANQYTYTVLINGF 244

Query: 201 -KLAVWQKNLSAVHEIWEDY-IKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAM 258
            K+ + +  +    E++E   +     ++++    +        L +A+E    M    +
Sbjct: 245 FKMGLKKDGI----ELYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRERGV 300

Query: 259 MGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQ 318
              +    T  G L   R             +VL                   AE+LM +
Sbjct: 301 ACNVVTYNTLIGGLCQER-------------RVLE------------------AERLMCR 329

Query: 319 MQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALE 378
           M+  GL P+  +Y+  I    S   L     +   M+ +   P   ++AT ++  +   E
Sbjct: 330 MKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSP---SLATYNILIAGFSE 386

Query: 379 LDLAEALLDQI----SRCTNPKP--FSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRT 431
              +  + D +    +R  +P    ++  + A    D  E+A +I++ M +  L  DI  
Sbjct: 387 AKNSAGVTDMVREMEARGLSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYI 446

Query: 432 YELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEG 491
           Y +L      V    E   +F  +D        EM +  N++                  
Sbjct: 447 YGVLIHGLCVVGDMKEASKLFKSLD--------EMHLKPNDV------------------ 480

Query: 492 MIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI 551
                               YNT+++   +   S+RA+ + K+M   G+ PN A+YN  I
Sbjct: 481 -------------------IYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASYNSTI 521

Query: 552 DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLD 591
                   +  A  L+  M+  G  P    +  + K   D
Sbjct: 522 QILCKDEKWTEAEVLLKDMIELGLKPSISIWNMISKARFD 561



 Score = 44.7 bits (104), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 38/195 (19%), Positives = 84/195 (43%), Gaps = 2/195 (1%)

Query: 492 MIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI 551
           +  EL Q   DS  P     +  ++++ V +Q   +A+  F QM   G+ P + T+N ++
Sbjct: 79  LFHELTQPHLDS-FPTHVLIHEAIINAHVRSQLPEQALFYFNQMIGRGLVPGSNTFNNLL 137

Query: 552 DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIP 611
                   F+ A  + +   +        ++  +IK   + G  D+   +L  +   G+ 
Sbjct: 138 ILLIKSNFFEKAWRVFNE-TKGNVKLDVYSFGIMIKGCCEVGYLDKGFEVLGQMEEMGLS 196

Query: 612 HDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEA 671
            +V++Y T++   C+ G I+  + +  +M +  V  +  T   + +G+   G     +E 
Sbjct: 197 PNVVVYTTLIDGCCKNGDIERGKQLFYKMGELDVVANQYTYTVLINGFFKMGLKKDGIEL 256

Query: 672 LQVLSMRMLCEEVST 686
            + + +  +   V T
Sbjct: 257 YEKMKLTGIVPNVYT 271


>gi|229914885|gb|ACQ90610.1| putative PPR repeat protein [Eutrema halophilum]
          Length = 1023

 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 74/353 (20%), Positives = 145/353 (41%), Gaps = 31/353 (8%)

Query: 326 PSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELD-LAEA 384
           P    +D     ++ +      ++    M++  + P+  +   L  + ++  + D +   
Sbjct: 61  PGFGVFDALFSVLIEEDMFEEALQCFSKMKRCRVFPKTRSCNGLLHKFARLGKTDGMKRF 120

Query: 385 LLDQISRCTNPKPFSAFLAACDTMDKP---ERAIKIFAKMR-QKLRPDIRTYELLFSLFG 440
             D I   + P  F+ +    D M K    E A  +F +M+ + L PD  TY  +   +G
Sbjct: 121 FKDMIGAGSKPTVFT-YNIMIDCMCKEGDIEAASGLFEEMKFRGLIPDTVTYNSMIDGYG 179

Query: 441 NVNAPYEEGNMFSQVDS--------------------AKRINAIEM--DMARNNIQHSHI 478
            V    +    F ++ S                     K    +E   +M ++ ++ + +
Sbjct: 180 KVGRLDDTVYFFEEMKSMSCEPDVITYNTLINCFCKFGKLPKGLEFFREMKQSGLKPNVV 239

Query: 479 SMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQM 535
           S   L+ A   E M+++ ++++ D +     P   TY +++ +  +      A  +  +M
Sbjct: 240 SYSTLVDAFCKEDMMQQALKFYVDMRRLGLVPNEHTYTSLVDAYCKIGNLSDAFRLADEM 299

Query: 536 KTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDF 595
              G+  N  TY  +ID    +   K A  L   MV  G  P   +YTALI   +   + 
Sbjct: 300 SQVGVEWNVVTYTALIDGLCDVERIKEAEELFGKMVTAGVIPNLASYTALIHGFVKAKNM 359

Query: 596 DEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
           D AL LLD +   GI  D+LLY T +   C   +I+  + ++ +M +  ++ +
Sbjct: 360 DRALELLDEMKGRGIKPDLLLYGTFIWSLCGLEKIEAAKVVMNEMQEKGIKAN 412



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 95/204 (46%), Gaps = 3/204 (1%)

Query: 478 ISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQ 534
           ++  +++   G  G + + + +F + K+    P   TYNT+++   +  +  + +E F++
Sbjct: 169 VTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNTLINCFCKFGKLPKGLEFFRE 228

Query: 535 MKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGD 594
           MK  G+ PN  +Y+ ++D        + A      M R G  P   TYT+L+      G+
Sbjct: 229 MKQSGLKPNVVSYSTLVDAFCKEDMMQQALKFYVDMRRLGLVPNEHTYTSLVDAYCKIGN 288

Query: 595 FDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHF 654
             +A  L D +S  G+  +V+ Y  ++   C+  RI   E +  +M    V P+ ++   
Sbjct: 289 LSDAFRLADEMSQVGVEWNVVTYTALIDGLCDVERIKEAEELFGKMVTAGVIPNLASYTA 348

Query: 655 VFSGYVNCGFHNSAMEALQVLSMR 678
           +  G+V     + A+E L  +  R
Sbjct: 349 LIHGFVKAKNMDRALELLDEMKGR 372



 Score = 58.9 bits (141), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 83/423 (19%), Positives = 156/423 (36%), Gaps = 99/423 (23%)

Query: 318 QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKAL 377
           +M+S+  +P   TY+  I        L  G+E  + M+Q+ LKP                
Sbjct: 193 EMKSMSCEPDVITYNTLINCFCKFGKLPKGLEFFREMKQSGLKP---------------- 236

Query: 378 ELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLF 436
                           N   +S  + A    D  ++A+K +  MR+  L P+  TY  L 
Sbjct: 237 ----------------NVVSYSTLVDAFCKEDMMQQALKFYVDMRRLGLVPNEHTYTSLV 280

Query: 437 SLF---GNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMI 493
             +   GN++  +   +  SQV                 ++ + ++   L+  L     I
Sbjct: 281 DAYCKIGNLSDAFRLADEMSQV----------------GVEWNVVTYTALIDGLCDVERI 324

Query: 494 RELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIM 550
           +E  + F    T    P   +Y  ++H  V+A+   RA+E+  +MK  GI P+   Y   
Sbjct: 325 KEAEELFGKMVTAGVIPNLASYTALIHGFVKAKNMDRALELLDEMKGRGIKPDLLLYGTF 384

Query: 551 IDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK----------------------- 587
           I     +   ++A  +++ M   G    T  YT L+                        
Sbjct: 385 IWSLCGLEKIEAAKVVMNEMQEKGIKANTFIYTTLMDAYFKSENPSEGLHLLEEMLELDI 444

Query: 588 --------ILLD----YGDFDEALNLLDLVSLE-GIPHDVLLYNTILKKACEKGRIDVIE 634
                   +L+D         +A++    +S + G+  +  +Y  ++   C++ +++   
Sbjct: 445 EVTAVTFCVLIDGLCKNKLVSKAIDYFGRISNDFGLQANAAIYTAMIDGLCKEDQVEAAT 504

Query: 635 FIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDF 694
            + EQM Q  + PD +    +  G +  G        +Q L++R    E+    E  + F
Sbjct: 505 TLFEQMAQKGLVPDRTAYTSLIDGKLKQG------NVVQALALRDKMAEIGV--ESGARF 556

Query: 695 EDL 697
            DL
Sbjct: 557 GDL 559



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/155 (21%), Positives = 66/155 (42%), Gaps = 4/155 (2%)

Query: 508 GTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALV 567
           G   ++ +   L+E      A++ F +MK C + P   + N ++   + +          
Sbjct: 62  GFGVFDALFSVLIEEDMFEEALQCFSKMKRCRVFPKTRSCNGLLHKFARLGKTDGMKRFF 121

Query: 568 SMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEK 627
             M+  G  P   TY  +I  +   GD + A  L + +   G+  D + YN+++    + 
Sbjct: 122 KDMIGAGSKPTVFTYNIMIDCMCKEGDIEAASGLFEEMKFRGLIPDTVTYNSMIDGYGKV 181

Query: 628 GRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNC 662
           GR+D   +  E+M     +PD  T    ++  +NC
Sbjct: 182 GRLDDTVYFFEEMKSMSCEPDVIT----YNTLINC 212


>gi|413939576|gb|AFW74127.1| hypothetical protein ZEAMMB73_460696 [Zea mays]
          Length = 581

 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 105/263 (39%), Gaps = 17/263 (6%)

Query: 410 KPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
           +P  A+++F  MR + L PD      L +             +F +             M
Sbjct: 123 RPHDAVRVFDHMRARGLAPDAHACTALLTALARARMTATARRVFDE-------------M 169

Query: 469 ARNNI---QHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQES 525
           AR  +    H + +M ++    G       ++     +   L   +YNTV+         
Sbjct: 170 ARAGLAATTHVYNAMLHVCLKAGDAAQAEAIVTRMDAAGVTLDRFSYNTVIALYCRKGMG 229

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
           + AM    +M   GI P+  T+N  I         K A+ L + MV     P  +TYT L
Sbjct: 230 YEAMCARDRMDKEGIRPDTVTWNSSIHGLCKEGRVKEAAQLFTEMVAAQATPDNVTYTTL 289

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           I      G+ +EA+ L   +   G+   V  YN IL+K CE G +  +  ++ +M   KV
Sbjct: 290 IDGYCRAGNVEEAVKLRGRMEAAGMLPGVATYNAILRKLCEDGNMKEVHRLLHEMDGRKV 349

Query: 646 QPDPSTCHFVFSGYVNCGFHNSA 668
           Q D  TC+ + + Y   G   SA
Sbjct: 350 QADHVTCNTLINAYCKRGDMTSA 372



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 74/376 (19%), Positives = 159/376 (42%), Gaps = 26/376 (6%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVL---K 352
           ++ ++H C +  ++  AE ++ +M + G+     +Y+  I A+   +G+  G E +    
Sbjct: 181 YNAMLHVCLKAGDAAQAEAIVTRMDAAGVTLDRFSYNTVI-ALYCRKGM--GYEAMCARD 237

Query: 353 IMQQNNLKPQDSTI-ATLSVECSKALELDLAEALLDQISRCTNPK--PFSAFLAACDTMD 409
            M +  ++P   T  +++   C +    + A+   + ++    P    ++  +       
Sbjct: 238 RMDKEGIRPDTVTWNSSIHGLCKEGRVKEAAQLFTEMVAAQATPDNVTYTTLIDGYCRAG 297

Query: 410 KPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
             E A+K+  +M    + P + TY  +           E+GNM       K ++ +  +M
Sbjct: 298 NVEEAVKLRGRMEAAGMLPGVATYNAILRKL------CEDGNM-------KEVHRLLHEM 344

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIR---ELIQYFCDSKTPLGTPTYNTVLHSLVEAQES 525
               +Q  H++   L+ A    G +    ++ +   +S   L   TY  ++H   +A+E 
Sbjct: 345 DGRKVQADHVTCNTLINAYCKRGDMTSACKVKKKMMESGLQLNHFTYKALIHGFCKAREL 404

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
             A E F QM   G  PN + ++ ++D         +  A+   +++ G  P    Y +L
Sbjct: 405 DGAKEAFFQMVDAGFSPNYSVFSWLVDGFCKKNNADAVLAIPDELMKRGLPPDKAVYRSL 464

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           I+ L   G  D+A  + D +  +G+  D L+Y T+      KG        ++ M +N++
Sbjct: 465 IRRLCRKGLVDQAQRVFDQMQSKGLVGDSLVYATLAYTYLTKGNPTAALNTLDGMTKNQL 524

Query: 646 QPDPSTCHFVFSGYVN 661
              P   + + + Y +
Sbjct: 525 YITPQIYNCLCTSYAD 540



 Score = 57.0 bits (136), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 62/145 (42%)

Query: 519 LVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQ 578
           L ++   H A+ +F  M+  G+ P+A     ++   +  R   +A  +   M R G    
Sbjct: 118 LAQSARPHDAVRVFDHMRARGLAPDAHACTALLTALARARMTATARRVFDEMARAGLAAT 177

Query: 579 TMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIE 638
           T  Y A++ + L  GD  +A  ++  +   G+  D   YNT++   C KG         +
Sbjct: 178 THVYNAMLHVCLKAGDAAQAEAIVTRMDAAGVTLDRFSYNTVIALYCRKGMGYEAMCARD 237

Query: 639 QMHQNKVQPDPSTCHFVFSGYVNCG 663
           +M +  ++PD  T +    G    G
Sbjct: 238 RMDKEGIRPDTVTWNSSIHGLCKEG 262



 Score = 44.3 bits (103), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 55/247 (22%), Positives = 100/247 (40%), Gaps = 12/247 (4%)

Query: 121 NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLC 180
           +N  Y  ++   C+ G +EEA  L   + E  G+ P +  YN+ L    +  +M   +  
Sbjct: 282 DNVTYTTLIDGYCRAGNVEEAVKLRGRM-EAAGMLPGVATYNAILRKLCEDGNMKEVHRL 340

Query: 181 LDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH-YSLSIFSLRKFVWSFTR 239
           L  MD R V  + VT   L+     + ++++  ++ +  ++    L+ F+ +  +  F +
Sbjct: 341 LHEMDGRKVQADHVTCNTLINAYCKRGDMTSACKVKKKMMESGLQLNHFTYKALIHGFCK 400

Query: 240 LRDLKSAYETLQHMVALAMMGKLYI-NRTSEGRLRSSRLD----IPIPL--NALPVMKVL 292
            R+L  A E    MV         + +   +G  + +  D    IP  L    LP  K +
Sbjct: 401 ARELDGAKEAFFQMVDAGFSPNYSVFSWLVDGFCKKNNADAVLAIPDELMKRGLPPDKAV 460

Query: 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
              +  +I    R      A+++  QMQS GL   S  Y       ++       +  L 
Sbjct: 461 ---YRSLIRRLCRKGLVDQAQRVFDQMQSKGLVGDSLVYATLAYTYLTKGNPTAALNTLD 517

Query: 353 IMQQNNL 359
            M +N L
Sbjct: 518 GMTKNQL 524


>gi|358344944|ref|XP_003636545.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355502480|gb|AES83683.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1280

 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 71/298 (23%), Positives = 122/298 (40%), Gaps = 21/298 (7%)

Query: 467 DMARNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQ 523
           +M   NI     +   L+ AL  EG I+E   +I             TYNT++       
Sbjct: 253 EMVMKNINPDAYTFNILVDALCKEGKIKEAKNVIAVMMKEGVEPTVVTYNTLMDGYCLVN 312

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
           E  +A  +   +    + PN+ +YNIMI+    I+    A  L   M   G  P  +TY 
Sbjct: 313 EVGKAKHVLSIISRMRVAPNSRSYNIMINGFCKIKMVDEALCLFHEMCCRGIAPHKVTYN 372

Query: 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
           +LI  L   G    A  L+D +    IP D++ YN+++   C+   +D    +++++ ++
Sbjct: 373 SLIDGLCKAGRIPYAWELVDEMHNNCIPADIVTYNSLIDVFCKNQHVDKAIALVKKIKEH 432

Query: 644 KVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMR--------------MLCEE--VSTL 687
            +QP+  T + +  G    G   +A +  Q L ++               LC+E      
Sbjct: 433 GIQPNMCTYNILIDGLCKGGQLKNAQDVFQDLLIKGYNVNAWTYNIMINGLCKEGLFDEA 492

Query: 688 EEKRSDFEDLILAEDSEAESRILQ--FCEDSNENLAFTAALLQLRWCTIVGFPISWSL 743
           E   S  ED  +  D+     I+Q  F +D NE        + ++   +  F I  +L
Sbjct: 493 EVLLSKMEDNGIIPDAVTYETIIQALFHKDENEKAQKLLREMVIKGVVVYAFEIRRTL 550



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/187 (22%), Positives = 84/187 (44%), Gaps = 3/187 (1%)

Query: 476 SHISMKNLLKALGAEGMIRELIQYFCDSKTPL---GTPTYNTVLHSLVEAQESHRAMEIF 532
           +H++   L+  L   G  R  +Q     +  L       Y+T++  L + +    A  ++
Sbjct: 157 NHVTYGILINGLCKMGQTRAALQVLRQIEGKLVNTNVVMYSTIIDGLCKDKLVTDAYGLY 216

Query: 533 KQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDY 592
            +M    IPP   T++ +I    I+  FK A  L + MV     P   T+  L+  L   
Sbjct: 217 SEMIVKRIPPTVVTFSSLIYGFCIVGKFKDAFRLFNEMVMKNINPDAYTFNILVDALCKE 276

Query: 593 GDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTC 652
           G   EA N++ ++  EG+   V+ YNT++   C    +   + ++  + + +V P+  + 
Sbjct: 277 GKIKEAKNVIAVMMKEGVEPTVVTYNTLMDGYCLVNEVGKAKHVLSIISRMRVAPNSRSY 336

Query: 653 HFVFSGY 659
           + + +G+
Sbjct: 337 NIMINGF 343



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 77/166 (46%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TY  +++ L +  ++  A+++ +Q++   +  N   Y+ +ID     +    A  L S M
Sbjct: 160 TYGILINGLCKMGQTRAALQVLRQIEGKLVNTNVVMYSTIIDGLCKDKLVTDAYGLYSEM 219

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           +     P  +T+++LI      G F +A  L + + ++ I  D   +N ++   C++G+I
Sbjct: 220 IVKRIPPTVVTFSSLIYGFCIVGKFKDAFRLFNEMVMKNINPDAYTFNILVDALCKEGKI 279

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
              + +I  M +  V+P   T + +  GY        A   L ++S
Sbjct: 280 KEAKNVIAVMMKEGVEPTVVTYNTLMDGYCLVNEVGKAKHVLSIIS 325



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/199 (23%), Positives = 84/199 (42%), Gaps = 41/199 (20%)

Query: 489 AEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYN 548
           A G+  E+I      + P    T++++++      +   A  +F +M    I P+A T+N
Sbjct: 212 AYGLYSEMIV----KRIPPTVVTFSSLIYGFCIVGKFKDAFRLFNEMVMKNINPDAYTFN 267

Query: 549 IMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK---ILLDYGD----------- 594
           I++D        K A  ++++M+++G  P  +TY  L+    ++ + G            
Sbjct: 268 ILVDALCKEGKIKEAKNVIAVMMKEGVEPTVVTYNTLMDGYCLVNEVGKAKHVLSIISRM 327

Query: 595 ---------------------FDEALNLLDLVSLEGI-PHDVLLYNTILKKACEKGRIDV 632
                                 DEAL L   +   GI PH V  YN+++   C+ GRI  
Sbjct: 328 RVAPNSRSYNIMINGFCKIKMVDEALCLFHEMCCRGIAPHKV-TYNSLIDGLCKAGRIPY 386

Query: 633 IEFIIEQMHQNKVQPDPST 651
              ++++MH N +  D  T
Sbjct: 387 AWELVDEMHNNCIPADIVT 405


>gi|357135887|ref|XP_003569539.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g46100-like [Brachypodium distachyon]
          Length = 476

 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 82/353 (23%), Positives = 143/353 (40%), Gaps = 31/353 (8%)

Query: 326 PSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLK----PQDSTIATLSVECSKALELDL 381
           P + T     R + ++R  R  + +       ++     P   T++ L+   + A  L L
Sbjct: 12  PKTLTAGHLHRLVRAERDPRRALALFDAATAASVSAPILPSPDTVSLLTSRLASAGLLPL 71

Query: 382 AEALLDQISRCTNPK------PFSAFLAACDTMDKPERAIKIF--AKMRQKLRPDIRTY- 432
           A +LL + SR   P       PF   L A     +P  A+++F  A     L    R+Y 
Sbjct: 72  ATSLLSR-SRALFPSAADLEPPFLTLLRAFSRTHRPLAALQLFRSAPSALALPHSARSYT 130

Query: 433 ELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKA--LGAE 490
            +L +L  + + P                +++  DM       +  +   LLKA    A 
Sbjct: 131 AVLATLVSHSHLPLA--------------HSLLADMRAGGFAPTTATYNVLLKAHCSDAS 176

Query: 491 GMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIM 550
             I + ++ F +   P    +YNTV+  L        A EIF +M   G+ P   TY  +
Sbjct: 177 APIEDAVRLFRNIPKPDAC-SYNTVIDGLCRRSRRADAQEIFSEMVANGVAPTVVTYTTV 235

Query: 551 IDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGI 610
           I+  +   C   A  +   M R G  P  +TY++LI  L   G    AL LLD ++ E  
Sbjct: 236 INWLARDGCLDDALKMFDEMGRIGIAPNVVTYSSLIDGLCKGGRAASALELLDRMAKEAK 295

Query: 611 PHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
             + + Y++++   C++ R++    ++++M     +PD      +  G    G
Sbjct: 296 LPNTITYSSVINGLCKEDRLNEAMEVLDRMRLQGRKPDAGLFGKLIVGLCGAG 348



 Score = 66.2 bits (160), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 74/140 (52%), Gaps = 4/140 (2%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASAL--VS 568
           TY TV++ L        A+++F +M   GI PN  TY+ +ID   + +  ++ASAL  + 
Sbjct: 231 TYTTVINWLARDGCLDDALKMFDEMGRIGIAPNVVTYSSLID--GLCKGGRAASALELLD 288

Query: 569 MMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
            M ++   P T+TY+++I  L      +EA+ +LD + L+G   D  L+  ++   C  G
Sbjct: 289 RMAKEAKLPNTITYSSVINGLCKEDRLNEAMEVLDRMRLQGRKPDAGLFGKLIVGLCGAG 348

Query: 629 RIDVIEFIIEQMHQNKVQPD 648
           R       +++M  + V+P+
Sbjct: 349 RAVEAANYLDEMVLSGVEPN 368


>gi|225441965|ref|XP_002271048.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g18020-like [Vitis vinifera]
          Length = 680

 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 135/629 (21%), Positives = 237/629 (37%), Gaps = 75/629 (11%)

Query: 59  IVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCAR---SPDPLFVMETWR--MM 113
           I+ ALC   R   +H  L L  A H +      ++L   AR   S  P   +  +R  + 
Sbjct: 102 IIHALCDANRFSEAHHRLLLSFASHCVPDQRTCNVL--IARLLDSRTPHATLHVFRGLIA 159

Query: 114 EEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHS 173
              E   +   Y  ++  LC      EA  L + +  R G  P    Y + +    K+  
Sbjct: 160 ARPEFVPSLINYNRLIHQLCSFSQPNEAHGLFFDMRSR-GHCPNAVSYTTLIDGYCKIGE 218

Query: 174 MVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEI----WEDYIKHYSLS--- 226
              A    D M    V  N +TY+ LLK  + ++++    E+    W+  +     S   
Sbjct: 219 ETSAWKLFDEMLESGVVPNSLTYSVLLKGVLCKRDVERGRELMCKLWQKMMDENDPSVNN 278

Query: 227 ------IFSLRK---FVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRL 277
                 I SL K   F+  F    D+       +  V   M+  L   R       S  +
Sbjct: 279 AAFANLIDSLCKEGFFLEVFRIAEDMPQGKSVSEEFVYGQMIDSLC--RCGRNHGASRIV 336

Query: 278 DIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRA 337
            I       P +     S++ ++H   +      A QL+ +    G   S HTY   + A
Sbjct: 337 YIMRKRGFFPSLV----SYNYIVHGLSKEGGCMRAYQLLKEGVEFGYMMSEHTYKVLLEA 392

Query: 338 IVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP 397
           +  D  L    EV+++M                          L +  +DQ       + 
Sbjct: 393 LCRDADLCKAREVMQLM--------------------------LNKEGVDQT------RI 420

Query: 398 FSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVD 456
           ++ +L A   M+ P   + +   M Q + +PD+ T   + + F  +    E   +   + 
Sbjct: 421 YNIYLRALCLMNNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRVEEALKVLDDMV 480

Query: 457 SAKRINAIEMDMARNNIQHSHI--SMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNT 514
             K         A +++ ++ I   + NL +   A  ++R ++    +     G  T+N 
Sbjct: 481 MGKFC-------APDSVTYTTIICGLLNLGRTEEALDVLRRVMP---EKGFKPGVVTFNA 530

Query: 515 VLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDG 574
           VLH L + Q+++ A E+F  M + G+  N  TY I+ID          A      ++   
Sbjct: 531 VLHGLFKLQQANVATEVFNSMVSDGVAANTITYTIIIDGLFESDQIDEAKRFWDDVIWPS 590

Query: 575 FYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIE 634
                  Y A++K L   G  +EA + L  +   G+  +V+ YN ++  AC+ G      
Sbjct: 591 KVHDNFVYAAILKGLCRSGKLNEACDFLYELVDCGVTLNVVNYNILIDHACKLGSKREAY 650

Query: 635 FIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
            I+++M +N + PD  T   +   + N G
Sbjct: 651 TIVQEMKKNGLTPDAVTWRILHKLHGNVG 679



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 91/220 (41%), Gaps = 9/220 (4%)

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPT-----YNTVLHSLVEA 522
           M  N+   ++ +  NL+ +L  EG   E+ +   D   P G        Y  ++ SL   
Sbjct: 269 MDENDPSVNNAAFANLIDSLCKEGFFLEVFRIAED--MPQGKSVSEEFVYGQMIDSLCRC 326

Query: 523 QESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTY 582
             +H A  I   M+  G  P+  +YN ++   S       A  L+   V  G+     TY
Sbjct: 327 GRNHGASRIVYIMRKRGFFPSLVSYNYIVHGLSKEGGCMRAYQLLKEGVEFGYMMSEHTY 386

Query: 583 TALIKILLDYGDFDEALNLLDL-VSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMH 641
             L++ L    D  +A  ++ L ++ EG+     +YN  L+  C       +  ++  M 
Sbjct: 387 KVLLEALCRDADLCKAREVMQLMLNKEGVDQ-TRIYNIYLRALCLMNNPTELLNVLVFML 445

Query: 642 QNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLC 681
           Q + QPD  T + V +G+   G    A++ L  + M   C
Sbjct: 446 QTQCQPDVITLNTVINGFCKMGRVEEALKVLDDMVMGKFC 485



 Score = 48.9 bits (115), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 75/165 (45%), Gaps = 3/165 (1%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC-CSIIRCFKSASALVSM 569
           +YN ++H L +     RA ++ K+    G   +  TY ++++  C      K+   +  M
Sbjct: 350 SYNYIVHGLSKEGGCMRAYQLLKEGVEFGYMMSEHTYKVLLEALCRDADLCKAREVMQLM 409

Query: 570 MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
           + ++G   QT  Y   ++ L    +  E LN+L  +       DV+  NT++   C+ GR
Sbjct: 410 LNKEGV-DQTRIYNIYLRALCLMNNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGR 468

Query: 630 IDVIEFIIEQMHQNK-VQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           ++    +++ M   K   PD  T   +  G +N G    A++ L+
Sbjct: 469 VEEALKVLDDMVMGKFCAPDSVTYTTIICGLLNLGRTEEALDVLR 513


>gi|255585033|ref|XP_002533225.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526957|gb|EEF29157.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 605

 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 89/421 (21%), Positives = 172/421 (40%), Gaps = 64/421 (15%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A  L+L M++ GL P+ +T++  +        L+   EV+ IM +NN+ P   T  TL  
Sbjct: 102 ARDLLLDMKNNGLFPNRNTFNILVSGYCKLGWLKEAAEVIDIMARNNVLPDVRTYTTLIG 161

Query: 372 ECSKALELDLAEALLDQISRCT---NPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRP 427
              K  ++D A  L D++       +   ++  +  C       +  ++  +M  K ++P
Sbjct: 162 GLCKDGKIDEAFRLRDEMENLKLLPHVVTYNMLINGCFECSSSLKGFELIDEMEGKGVKP 221

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVD-------------------SAKRIN-AIEM- 466
           +  TY ++   +         GN   +++                    A R++ A  M 
Sbjct: 222 NAVTYNVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVTFNTLSNGYCKAGRLSEAFRMM 281

Query: 467 -DMARNNIQHSHISMKNLLKALGAEGMIRELIQ---------YFCDSKTPLGT------- 509
            +M+R  ++ + +++  +L  L  E  + +  +         YF D +   GT       
Sbjct: 282 DEMSRKGLKMNSVTLNTILHTLCGERKLDDAYKLLSSASKRGYFVD-EVSYGTLIMGYFK 340

Query: 510 -------------------PTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYN-I 549
                               TY T++  L  + ++ ++++   ++   G+ P+  TYN I
Sbjct: 341 VGKSXXWDEMKEKEIIPSIITYGTMIGGLCRSGKTDQSIDKCNELLESGLVPDQTTYNTI 400

Query: 550 MIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEG 609
           ++  C   +  K A    + MV+  F P   T   L++ L   G  D+AL L      +G
Sbjct: 401 ILGYCREGQVDK-AFHFRNKMVKKSFKPDLFTCNILVRGLCTEGMLDKALKLFKTWISKG 459

Query: 610 IPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAM 669
              D + +NTI+   CE+GR +    ++ +M + K+ PD  T + + S   + G    A 
Sbjct: 460 KAIDAVTFNTIISGLCEEGRFEEAFDLLAEMEEKKLGPDCYTHNAILSALADAGRMKEAE 519

Query: 670 E 670
           E
Sbjct: 520 E 520



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 85/165 (51%), Gaps = 4/165 (2%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           +YNT+L  L +  + + A ++   MK  G+ PN  T+NI++     +   K A+ ++ +M
Sbjct: 85  SYNTILDVLCKKGKLNEARDLLLDMKNNGLFPNRNTFNILVSGYCKLGWLKEAAEVIDIM 144

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLD-LVSLEGIPHDVLLYNTILKKACEKGR 629
            R+   P   TYT LI  L   G  DEA  L D + +L+ +PH V+ YN ++   C +  
Sbjct: 145 ARNNVLPDVRTYTTLIGGLCKDGKIDEAFRLRDEMENLKLLPH-VVTYNMLI-NGCFECS 202

Query: 630 IDVIEF-IIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
             +  F +I++M    V+P+  T + V   YV  G  ++A   L+
Sbjct: 203 SSLKGFELIDEMEGKGVKPNAVTYNVVVKWYVKEGKMDNAGNELR 247



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 68/320 (21%), Positives = 131/320 (40%), Gaps = 37/320 (11%)

Query: 354 MQQNNLKPQDSTIATL-----------SVECSKALELDLAEALLDQISRCTNPKPFSAFL 402
           M++ +LKP   T+ TL           SV  SKA+  D+ +  ++      N   F+  +
Sbjct: 1   MKRLHLKPNLLTLNTLIKALVRYPSKPSVYLSKAIFSDVIKLGVE-----VNTNTFNILI 55

Query: 403 AACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI 461
             C   +K   AI +  KM+     PD  +Y  +  +        ++G +    D     
Sbjct: 56  CGCCIENKLSEAIGLIGKMKHFSCFPDNVSYNTILDVL------CKKGKLNEARD----- 104

Query: 462 NAIEMDMARNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHS 518
             + +DM  N +  +  +   L+      G ++E   +I     +       TY T++  
Sbjct: 105 --LLLDMKNNGLFPNRNTFNILVSGYCKLGWLKEAAEVIDIMARNNVLPDVRTYTTLIGG 162

Query: 519 LVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASA--LVSMMVRDGFY 576
           L +  +   A  +  +M+   + P+  TYN++I+ C    C  S     L+  M   G  
Sbjct: 163 LCKDGKIDEAFRLRDEMENLKLLPHVVTYNMLINGC--FECSSSLKGFELIDEMEGKGVK 220

Query: 577 PQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFI 636
           P  +TY  ++K  +  G  D A N L  +   G   D + +NT+    C+ GR+     +
Sbjct: 221 PNAVTYNVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVTFNTLSNGYCKAGRLSEAFRM 280

Query: 637 IEQMHQNKVQPDPSTCHFVF 656
           +++M +  ++ +  T + + 
Sbjct: 281 MDEMSRKGLKMNSVTLNTIL 300



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/156 (22%), Positives = 69/156 (44%)

Query: 507 LGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASAL 566
           + T T+N ++       +   A+ +  +MK     P+  +YN ++D          A  L
Sbjct: 46  VNTNTFNILICGCCIENKLSEAIGLIGKMKHFSCFPDNVSYNTILDVLCKKGKLNEARDL 105

Query: 567 VSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE 626
           +  M  +G +P   T+  L+      G   EA  ++D+++   +  DV  Y T++   C+
Sbjct: 106 LLDMKNNGLFPNRNTFNILVSGYCKLGWLKEAAEVIDIMARNNVLPDVRTYTTLIGGLCK 165

Query: 627 KGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNC 662
            G+ID    + ++M   K+ P   T + + +G   C
Sbjct: 166 DGKIDEAFRLRDEMENLKLLPHVVTYNMLINGCFEC 201



 Score = 48.9 bits (115), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 72/157 (45%), Gaps = 7/157 (4%)

Query: 535 MKTCGIPPNAATYNIMIDCCSIIRCFKSAS-----ALVSMMVRDGFYPQTMTYTALIKIL 589
           MK   + PN  T N +I   +++R     S     A+ S +++ G    T T+  LI   
Sbjct: 1   MKRLHLKPNLLTLNTLIK--ALVRYPSKPSVYLSKAIFSDVIKLGVEVNTNTFNILICGC 58

Query: 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649
                  EA+ L+  +       D + YNTIL   C+KG+++    ++  M  N + P+ 
Sbjct: 59  CIENKLSEAIGLIGKMKHFSCFPDNVSYNTILDVLCKKGKLNEARDLLLDMKNNGLFPNR 118

Query: 650 STCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
           +T + + SGY   G+   A E + +++   +  +V T
Sbjct: 119 NTFNILVSGYCKLGWLKEAAEVIDIMARNNVLPDVRT 155


>gi|224111844|ref|XP_002316000.1| predicted protein [Populus trichocarpa]
 gi|222865040|gb|EEF02171.1| predicted protein [Populus trichocarpa]
          Length = 745

 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 129/604 (21%), Positives = 239/604 (39%), Gaps = 79/604 (13%)

Query: 111 RMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAK 170
           R  + KE   +   +  +M   CK G L + +   + +  +YGI P    YN  +     
Sbjct: 174 RQNDGKEFAPSVVSFNTIMSRYCKLG-LADVAKSFFCMMLKYGILPDTYSYNILIHGLIV 232

Query: 171 LHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSL 230
             SM  A    + M+ + +  + VTY  + K       +S   EI +       L+   L
Sbjct: 233 AGSMEEALELTNDMEKQGLQPDMVTYKIVAKGFHLLGLMSGAREIIQKM-----LTDEGL 287

Query: 231 RKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMK 290
           +  + ++T L            +     MG    N     RLR   L     LN + +  
Sbjct: 288 KPDLVTYTVL------------ICGHCQMG----NIEEALRLRRDLLSSGFQLNVI-LYS 330

Query: 291 VLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEV 350
           VL  S       C R Q    A QL+ +M++  LQP   TY   I  +     ++  +++
Sbjct: 331 VLLSSL------CKRGQVDE-ALQLLYEMEANNLQPDLVTYSILIHGLCKQGKVQQAIQL 383

Query: 351 LKIMQQNNLKPQD-STIATLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAAC 405
            K M  N + P   +    L   C K +  D A    D +   +N +P    ++  +   
Sbjct: 384 YKEMCFNRIFPNSFAHSGILKGLCEKGMLSD-ARMYFDSLI-MSNLRPDVTLYNIMIDGY 441

Query: 406 DTMDKPERAIKIFAKMRQK-LRPDIRTYE-LLFSLFGN---------------------- 441
             +   E A++++ ++R K + P I T+  L++    N                      
Sbjct: 442 VKLGDVEEAVRLYKRLRDKAITPSIVTFNSLIYGFCKNRKVVEARRLLESIKLHGLEPSA 501

Query: 442 ------VNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRE 495
                 +NA  EEGN+        +++ + ++M   +I+ + ++   ++K L  +  + E
Sbjct: 502 VTYTTLMNAYCEEGNI-------NKLHELLLEMNLKDIEPTVVTYTVVIKGLCKQRKLEE 554

Query: 496 LIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID 552
            +Q   D +     P   TYNT++    +A++  +A E+   M    + P  ATYN++ID
Sbjct: 555 SVQLLEDMRAKGLAPDQITYNTIIQCFCKAKDMRKAFELLDDMLIHNLEPTPATYNVLID 614

Query: 553 -CCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIP 611
             C       +   LVS+  R+      + YT +IK     GD   A+ +   +  +G  
Sbjct: 615 GLCRYGDVEDADRVLVSLQDRN-INLTKVAYTTMIKAHCVKGDAQRAVKVFHQMVEKGFE 673

Query: 612 HDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEA 671
             +  Y+ ++ + C++  I+  ++    M  + V PD      + + +   G  +S  E 
Sbjct: 674 VSIKDYSAVINRLCKRCLINEAKYYFCIMLSDGVSPDQEIFEMMLNAFHRAGHVHSVFEL 733

Query: 672 LQVL 675
           L V+
Sbjct: 734 LAVM 737



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 80/326 (24%), Positives = 140/326 (42%), Gaps = 41/326 (12%)

Query: 414 AIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMF--SQVDSAKRINAIEMD--- 467
           A+ +  KM+ Q LRP I+TY  L     + +  ++  N    S    + R ++I +D   
Sbjct: 102 ALFVLVKMKEQNLRPSIQTYNSLLYNLRHTDIMWDVYNDIKDSGTPQSARTSSIIVDGLC 161

Query: 468 ----------MARNN----IQHSHISMKNLLKALGAEGMIRELIQYFC---DSKTPLGTP 510
                       R N       S +S   ++      G+      +FC          T 
Sbjct: 162 GQSRFRDAVLFLRQNDGKEFAPSVVSFNTIMSRYCKLGLADVAKSFFCMMLKYGILPDTY 221

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           +YN ++H L+ A     A+E+   M+  G+ P+  TY I+     ++     A  ++  M
Sbjct: 222 SYNILIHGLIVAGSMEEALELTNDMEKQGLQPDMVTYKIVAKGFHLLGLMSGAREIIQKM 281

Query: 571 VRD-GFYPQTMTYTALIKILLDYGDFDEALNLL-DLVSLEGIPHDVLLYNTILKKACEKG 628
           + D G  P  +TYT LI      G+ +EAL L  DL+S  G   +V+LY+ +L   C++G
Sbjct: 282 LTDEGLKPDLVTYTVLICGHCQMGNIEEALRLRRDLLS-SGFQLNVILYSVLLSSLCKRG 340

Query: 629 RIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS------------ 676
           ++D    ++ +M  N +QPD  T   +  G    G    A++  + +             
Sbjct: 341 QVDEALQLLYEMEANNLQPDLVTYSILIHGLCKQGKVQQAIQLYKEMCFNRIFPNSFAHS 400

Query: 677 --MRMLCEEVSTLEEKRSDFEDLILA 700
             ++ LCE+   L + R  F+ LI++
Sbjct: 401 GILKGLCEK-GMLSDARMYFDSLIMS 425



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 102/446 (22%), Positives = 185/446 (41%), Gaps = 38/446 (8%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGME--VL 351
           +S++ +IH      +   A +L   M+  GLQP   TY    +      GL +G    + 
Sbjct: 221 YSYNILIHGLIVAGSMEEALELTNDMEKQGLQPDMVTYKIVAKGF-HLLGLMSGAREIIQ 279

Query: 352 KIMQQNNLKPQDSTIATLSVECSKALELDLAEAL---LDQISRC--TNPKPFSAFLAACD 406
           K++    LKP   T   L   C      ++ EAL    D +S     N   +S  L++  
Sbjct: 280 KMLTDEGLKPDLVTYTVLI--CGHCQMGNIEEALRLRRDLLSSGFQLNVILYSVLLSSLC 337

Query: 407 TMDKPERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIE 465
              + + A+++  +M    L+PD+ TY +L      ++   ++G +   +   K      
Sbjct: 338 KRGQVDEALQLLYEMEANNLQPDLVTYSIL------IHGLCKQGKVQQAIQLYK------ 385

Query: 466 MDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCD---SKTPLGTPTYNTVLHSLVEA 522
            +M  N I  +  +   +LK L  +GM+ +   YF     S        YN ++   V+ 
Sbjct: 386 -EMCFNRIFPNSFAHSGILKGLCEKGMLSDARMYFDSLIMSNLRPDVTLYNIMIDGYVKL 444

Query: 523 QESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTY 582
            +   A+ ++K+++   I P+  T+N +I      R    A  L+  +   G  P  +TY
Sbjct: 445 GDVEEAVRLYKRLRDKAITPSIVTFNSLIYGFCKNRKVVEARRLLESIKLHGLEPSAVTY 504

Query: 583 TALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642
           T L+    + G+ ++   LL  ++L+ I   V+ Y  ++K  C++ +++    ++E M  
Sbjct: 505 TTLMNAYCEEGNINKLHELLLEMNLKDIEPTVVTYTVVIKGLCKQRKLEESVQLLEDMRA 564

Query: 643 NKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDFEDLILA-- 700
             + PD  T + +   +        A E L      ML   +  LE   + +  LI    
Sbjct: 565 KGLAPDQITYNTIIQCFCKAKDMRKAFELLD----DML---IHNLEPTPATYNVLIDGLC 617

Query: 701 --EDSEAESRILQFCEDSNENLAFTA 724
              D E   R+L   +D N NL   A
Sbjct: 618 RYGDVEDADRVLVSLQDRNINLTKVA 643


>gi|255561437|ref|XP_002521729.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539120|gb|EEF40716.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 629

 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/265 (23%), Positives = 117/265 (44%), Gaps = 19/265 (7%)

Query: 464 IEMDMAR---------NNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPT 511
           +++D+AR         + +Q    +   L+K L     I +   L+Q             
Sbjct: 156 VDIDVAREFYRKQMMGSGVQGDDYTFAILMKGLCLTNRIGDGFRLLQVMKSRGVKPNAVV 215

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           YNT+LH+L +  +  RA  +  +++     PN  T+N++I           A  L+    
Sbjct: 216 YNTLLHALCKNGKVGRARSLMDEIEE----PNDVTFNVLIAAYCKEENLVQALVLLEKSF 271

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
             GF P  +T T +++IL + G   EA+ +L+ V  +G   DV+ YNT+L+  C  G+I 
Sbjct: 272 SLGFVPDVVTMTKVVEILCNAGRVTEAVEMLERVEYKGGLVDVVAYNTLLRGFCRLGKIK 331

Query: 632 VIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKR 691
           V    +++M +    P+  T + + SG+ + G  + A++    +    +     T +   
Sbjct: 332 VAHRFLKEMERKGCLPNVETYNILISGFCDSGMFDMALDMFNDMKTDGISWNFDTYD--- 388

Query: 692 SDFEDLILAEDSEAESRILQFCEDS 716
           +  + L      E   +IL+  E+S
Sbjct: 389 TLIKGLFFGGRIEEGLKILELMEES 413



 Score = 62.4 bits (150), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 98/460 (21%), Positives = 171/460 (37%), Gaps = 72/460 (15%)

Query: 237 FTRLRDLKSAYETLQHMVALAMMGKLYINRTSEG-RLRSSRLDIPIPLNALPVMKVLRWS 295
           F R + + S  +   +  A+ M G    NR  +G RL        +  NA+         
Sbjct: 164 FYRKQMMGSGVQGDDYTFAILMKGLCLTNRIGDGFRLLQVMKSRGVKPNAV--------V 215

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           ++ ++HA  +    G A  LM +++    +P+  T++  I A   +  L   + +L+   
Sbjct: 216 YNTLLHALCKNGKVGRARSLMDEIE----EPNDVTFNVLIAAYCKEENLVQALVLLEKSF 271

Query: 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQI---SRCTNPKPFSAFLAACDTMDKPE 412
                P   T+  +      A  +  A  +L+++       +   ++  L     + K +
Sbjct: 272 SLGFVPDVVTMTKVVEILCNAGRVTEAVEMLERVEYKGGLVDVVAYNTLLRGFCRLGKIK 331

Query: 413 RAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM--DMA 469
            A +   +M R+   P++ TY +L S F                DS     A++M  DM 
Sbjct: 332 VAHRFLKEMERKGCLPNVETYNILISGF---------------CDSGMFDMALDMFNDMK 376

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLG--TPTYNTVLHSLVEAQE 524
            + I  +  +   L+K L   G I E   +++   +SK   G     YN+VL+ L +   
Sbjct: 377 TDGISWNFDTYDTLIKGLFFGGRIEEGLKILELMEESKGGSGGRISPYNSVLYGLYKKNM 436

Query: 525 SHRAME---------------------------------IFKQMKTCGIPPNAATYNIMI 551
              A+E                                 +F QM   G  PN   Y+ ++
Sbjct: 437 WDEALEFLMKMEKLFPRAVDRSLRILGFCEKGAVKNAKMVFDQMINEGGTPNILVYDCLV 496

Query: 552 DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIP 611
                    + A  L++ MV  G++     + ALI      G  + AL LLD +   G  
Sbjct: 497 HGFCQEGNLREAFELMNEMVGHGYFLVASGFNALIHGFCGQGKDESALKLLDDMVGRGCV 556

Query: 612 HDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
            D   Y+ ++   C KG       I  QM +  + PD ST
Sbjct: 557 PDRGTYSPLIDALCRKGNFQKALSIFNQMIEKGITPDSST 596


>gi|218202055|gb|EEC84482.1| hypothetical protein OsI_31142 [Oryza sativa Indica Group]
          Length = 586

 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 68/271 (25%), Positives = 119/271 (43%), Gaps = 15/271 (5%)

Query: 411 PERAIKIFAKMRQ-KLRPDIRTY-ELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
           PE AI+ F+ M      P I  +  LLF+L  + N   E G  F +  SA      + D+
Sbjct: 178 PEDAIRAFSSMAGFGFPPTIADFHSLLFAL--SRNGLVEYGERFFRESSA------QFDV 229

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRA 528
           +             + K   A  +  E+++   +    L    YN ++ +L    +   A
Sbjct: 230 SAKAYTILISGWAVVKKPENARSLFDEMVERGVE----LDVHVYNALIDALCRGGDITSA 285

Query: 529 MEIFKQM-KTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
            E    M K+ G+ PNAATY   +      +  ++A  ++  M      P   TY A+I+
Sbjct: 286 QEQLSNMQKSHGLVPNAATYGPFLHAACASKDVRAALRVLDRMHTHALTPNVFTYNAVIR 345

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
           +L D G+ +EA N+LD ++ +G   DV  YNT+L   C+   ++    +I +M +    P
Sbjct: 346 LLCDLGEINEAYNILDEITTQGEKPDVWSYNTLLNAHCKLKEVNKALRLISRMDKELCPP 405

Query: 648 DPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678
           D  + + +    +  G  ++A+E    +  R
Sbjct: 406 DRHSYNMLLKMLIGVGRFDTAIEVWDGMEKR 436



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 71/306 (23%), Positives = 129/306 (42%), Gaps = 35/306 (11%)

Query: 396 KPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQ 454
           K ++  ++    + KPE A  +F +M ++ +  D+  Y  L      ++A    G++ S 
Sbjct: 232 KAYTILISGWAVVKKPENARSLFDEMVERGVELDVHVYNAL------IDALCRGGDITSA 285

Query: 455 VDSAKRINAIEMDMARNNIQHSHISMKN------LLKALGAEGMIRELIQYFCDSKTPLG 508
            +              +N+Q SH  + N       L A  A   +R  ++      T   
Sbjct: 286 QEQL------------SNMQKSHGLVPNAATYGPFLHAACASKDVRAALRVLDRMHTHAL 333

Query: 509 TP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASA 565
           TP   TYN V+  L +  E + A  I  ++ T G  P+  +YN +++    ++    A  
Sbjct: 334 TPNVFTYNAVIRLLCDLGEINEAYNILDEITTQGEKPDVWSYNTLLNAHCKLKEVNKALR 393

Query: 566 LVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKK-A 624
           L+S M ++   P   +Y  L+K+L+  G FD A+ + D +   G       Y  ++   A
Sbjct: 394 LISRMDKELCPPDRHSYNMLLKMLIGVGRFDTAIEVWDGMEKRGFHPGAATYAVMIHGLA 453

Query: 625 CEKGRI-DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEE 683
            +KGR  D   + + +M    + P  +TC  +    +  G  +     L VL+ RM    
Sbjct: 454 SKKGRAEDACSYFV-RMVDEGIPPYQATCEVLRDRLLMLGLRDQ----LGVLTDRMRRST 508

Query: 684 VSTLEE 689
             T++E
Sbjct: 509 SYTIQE 514



 Score = 44.7 bits (104), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 79/193 (40%), Gaps = 9/193 (4%)

Query: 30  VANKLELSRTLTTTMGLNEESISKATQMQIVDALCRG-ERSRASHLLLNLGHAHHSL-GA 87
           V  K E +R+L   M      +       ++DALCRG + + A   L N+  +H  +  A
Sbjct: 243 VVKKPENARSLFDEMVERGVELDVHVYNALIDALCRGGDITSAQEQLSNMQKSHGLVPNA 302

Query: 88  DDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNL--- 144
             +   L+    S D    +     M    +  N   Y  +++ LC  G + EA N+   
Sbjct: 303 ATYGPFLHAACASKDVRAALRVLDRMHTHALTPNVFTYNAVIRLLCDLGEINEAYNILDE 362

Query: 145 IYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAV 204
           I   GE+  ++     YN+ L A  KL  +  A   +  MD  +   +  +Y  LLK+ +
Sbjct: 363 ITTQGEKPDVW----SYNTLLNAHCKLKEVNKALRLISRMDKELCPPDRHSYNMLLKMLI 418

Query: 205 WQKNLSAVHEIWE 217
                    E+W+
Sbjct: 419 GVGRFDTAIEVWD 431



 Score = 44.3 bits (103), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 6/128 (4%)

Query: 113 MEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172
           M E+ + L+   Y  ++ ALC+GG +  A   +  + + +G+ P    Y  FL A     
Sbjct: 257 MVERGVELDVHVYNALIDALCRGGDITSAQEQLSNMQKSHGLVPNAATYGPFLHAACASK 316

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRK 232
            +  A   LD M +  +  N  TY  +++L      L  + EI E Y     ++    + 
Sbjct: 317 DVRAALRVLDRMHTHALTPNVFTYNAVIRL------LCDLGEINEAYNILDEITTQGEKP 370

Query: 233 FVWSFTRL 240
            VWS+  L
Sbjct: 371 DVWSYNTL 378



 Score = 42.7 bits (99), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 68/137 (49%), Gaps = 8/137 (5%)

Query: 313 EQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTI-ATLSV 371
           EQL    +S GL P++ TY  F+ A  + + +R  + VL  M  + L P   T  A + +
Sbjct: 287 EQLSNMQKSHGLVPNAATYGPFLHAACASKDVRAALRVLDRMHTHALTPNVFTYNAVIRL 346

Query: 372 ECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDKPERAIKIFAKMRQKL-R 426
            C    E++ A  +LD+I+     KP    ++  L A   + +  +A+++ ++M ++L  
Sbjct: 347 LCDLG-EINEAYNILDEIT-TQGEKPDVWSYNTLLNAHCKLKEVNKALRLISRMDKELCP 404

Query: 427 PDIRTYELLFSLFGNVN 443
           PD  +Y +L  +   V 
Sbjct: 405 PDRHSYNMLLKMLIGVG 421


>gi|15225031|ref|NP_178657.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|42570711|ref|NP_973429.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216767|sp|Q9ZUE9.1|PP149_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g06000
 gi|4006835|gb|AAC95177.1| hypothetical protein [Arabidopsis thaliana]
 gi|110736272|dbj|BAF00106.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250896|gb|AEC05990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|330250897|gb|AEC05991.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 536

 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 83/374 (22%), Positives = 156/374 (41%), Gaps = 23/374 (6%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           W+++ +  +  +     LA Q+   M+S G+ P++    GF+ +  +++G  +    L +
Sbjct: 104 WTYNLLTRSLCKAGLHDLAGQMFECMKSDGVSPNNRLL-GFLVSSFAEKGKLHFATAL-L 161

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDK 410
           +Q   ++     + +L     K   ++ A  L D+  R   C + K F+  +     + K
Sbjct: 162 LQSFEVEGCCMVVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVGK 221

Query: 411 PERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
            E+A+++   M      PDI TY  L   F   N   +   MF  V S    +    D+ 
Sbjct: 222 AEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSG---SVCSPDV- 277

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLG----TPTYNTVLHSLVEAQES 525
                   ++  +++      G +RE      D    LG      T+N ++    +A E 
Sbjct: 278 --------VTYTSMISGYCKAGKMREASSLL-DDMLRLGIYPTNVTFNVLVDGYAKAGEM 328

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
             A EI  +M + G  P+  T+  +ID    +        L   M   G +P   TY+ L
Sbjct: 329 LTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSIL 388

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           I  L +     +A  LL  ++ + I     +YN ++   C+ G+++    I+E+M + K 
Sbjct: 389 INALCNENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKC 448

Query: 646 QPDPSTCHFVFSGY 659
           +PD  T   +  G+
Sbjct: 449 KPDKITFTILIIGH 462


>gi|357495705|ref|XP_003618141.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355493156|gb|AES74359.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 846

 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 76/154 (49%), Gaps = 1/154 (0%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           T+N + H L    +S +     ++M+  G  P+  TYNI+I+     R  + A  L  +M
Sbjct: 265 TFNIMTHVLCREGDSDKVNGFLEKMEEEGFEPDLVTYNILINGYCKKRRLEDAFYLYKIM 324

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKAC-EKGR 629
              G  P  ++Y+AL+  L   G   EA  L + +   GI  DV+ YNT++   C E G+
Sbjct: 325 GIRGVVPNLISYSALMNGLCKEGKIKEAHQLFNQMVQRGIDPDVVSYNTLISGYCKEGGK 384

Query: 630 IDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
           + +   ++ +M    ++PD  TC  VF GY   G
Sbjct: 385 MQMCRSLLHEMIGIGIRPDNVTCRIVFQGYTREG 418



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 78/370 (21%), Positives = 143/370 (38%), Gaps = 14/370 (3%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           ++F+ + H   R  +S      + +M+  G +P   TY+  I      R L +   + KI
Sbjct: 264 YTFNIMTHVLCREGDSDKVNGFLEKMEEEGFEPDLVTYNILINGYCKKRRLEDAFYLYKI 323

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPKPFSA---FLAACDTMD 409
           M    + P   + + L     K  ++  A  L +Q + R  +P   S        C    
Sbjct: 324 MGIRGVVPNLISYSALMNGLCKEGKIKEAHQLFNQMVQRGIDPDVVSYNTLISGYCKEGG 383

Query: 410 KPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
           K +    +  +M    +RPD  T  ++F  +        EG + S ++    +    + +
Sbjct: 384 KMQMCRSLLHEMIGIGIRPDNVTCRIVFQGYT------REGKLLSALNMVAELQRFGIKI 437

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRA 528
             N   +  +++    +   A   +  + Q   D        TY  +  SL        A
Sbjct: 438 PENLYDYLLVALCKEGRPFAARSFLIRISQ---DGDYVPEMSTYIKLAESLCSFNNVEEA 494

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
           + +  +M    +  N  TY  +I C   ++    A  L+  MV  G  P      ALI  
Sbjct: 495 LILKSEMAKKSMKLNLTTYKAIISCLCRVKRTSEAENLLEEMVSLGILPDLEIKRALING 554

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
             +  D D+A++LL   + E   +D   YN I+K  CE G +  +  + +++ +    P+
Sbjct: 555 YCEENDVDKAVSLLKFFAKEFQVYDTESYNAIVKVFCEVGNVAELMELQDKLVKIGYVPN 614

Query: 649 PSTCHFVFSG 658
             TC +V  G
Sbjct: 615 SLTCKYVIRG 624



 Score = 43.9 bits (102), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 29/148 (19%), Positives = 60/148 (40%)

Query: 501 CDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCF 560
           C          ++ ++ + V+     + +E F +       PN    N +++  S I   
Sbjct: 185 CTEDCNWNPVIFDMLIKAYVKLGMVEKGLETFWKNVEGSFVPNVVACNCLLNGLSKINYI 244

Query: 561 KSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTI 620
                +   M R G +    T+  +  +L   GD D+    L+ +  EG   D++ YN +
Sbjct: 245 GECWEVYEEMGRLGIHRNGYTFNIMTHVLCREGDSDKVNGFLEKMEEEGFEPDLVTYNIL 304

Query: 621 LKKACEKGRIDVIEFIIEQMHQNKVQPD 648
           +   C+K R++   ++ + M    V P+
Sbjct: 305 INGYCKKRRLEDAFYLYKIMGIRGVVPN 332


>gi|302757529|ref|XP_002962188.1| hypothetical protein SELMODRAFT_60915 [Selaginella moellendorffii]
 gi|300170847|gb|EFJ37448.1| hypothetical protein SELMODRAFT_60915 [Selaginella moellendorffii]
          Length = 535

 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 105/237 (44%), Gaps = 10/237 (4%)

Query: 452 FSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYF-------CDSK 504
           F+  D  + +NA+  +M    I  +  +   +L AL A   + + + YF       C   
Sbjct: 39  FAARDDFEVVNALLREMKARGITSNGATHGVILSALCARRDLDKAVSYFNSRTEEACRLF 98

Query: 505 TPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFK 561
             +  P   TY  ++  L +A      +E +++M      P   TY +++D        +
Sbjct: 99  EAIEAPDSVTYTAIVDGLFKAGNYDAGLEYYEKMVASKCEPTLLTYTVLVDGLCKAHKVE 158

Query: 562 SASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTIL 621
            A  +   M+R G  P  + Y++LI  L   G  DEA  L+DL+   G P   + Y +I+
Sbjct: 159 RACDVFEEMIRKGHKPDIIAYSSLIDGLSKAGRVDEARKLVDLMIARGPPPTAVAYTSIV 218

Query: 622 KKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678
              C+ GRI      I++M + +++P   T  F+ +GY+  G    A   ++ ++ R
Sbjct: 219 AGLCKCGRIQEAVKTIQEMRRRRLRPRVDTYSFIVTGYIGMGKVEEAFAVMEEMADR 275



 Score = 72.8 bits (177), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 81/369 (21%), Positives = 167/369 (45%), Gaps = 29/369 (7%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           ++S +I    +      A +L+  M + G  P++  Y   +  +     ++   E +K +
Sbjct: 178 AYSSLIDGLSKAGRVDEARKLVDLMIARGPPPTAVAYTSIVAGLCKCGRIQ---EAVKTI 234

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAE---ALLDQIS-RCTNPK--PFSAFLAACDTM 408
           Q+   +     + T S   +  + +   E   A++++++ R   P    ++ F+ A  ++
Sbjct: 235 QEMRRRRLRPRVDTYSFIVTGYIGMGKVEEAFAVMEEMADRDCAPDTISYTMFIEALYSI 294

Query: 409 DKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMD 467
            + E A K+F  M +K  +PD+ TY ++   F       +EG+M +     + ++   + 
Sbjct: 295 GRREEAEKVFETMVEKGCKPDMHTYGIIIDNF------CKEGSMAAATHVLRLMDKAAVK 348

Query: 468 MAR---NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQE 524
             R     I    +    L +AL       EL Q          T TYNTV+++L + ++
Sbjct: 349 PNRYIYTMIMDGFVKSSRLEEAL-------ELYQRILKDGILPSTVTYNTVINALCKLKK 401

Query: 525 SHRAMEIFKQM--KTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTY 582
              A+E+ ++M  +   + P+  TY+++I     +   + A  L++ M+ +G  P   TY
Sbjct: 402 MDEALELLREMQRRKEELEPSIVTYSMIIHGLGKVGMEERAFDLLAEMIDNGVIPDCFTY 461

Query: 583 TALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642
           T+LI+ L   G    A+ LL+ +   GI  D   Y T+++  C +  +D    ++++M +
Sbjct: 462 TSLIQTLAGAGKVSRAMELLEEMLKAGIFPDDHTYGTLVQILC-RSDVDAAWDLLQEMMR 520

Query: 643 NKVQPDPST 651
           N   P+  T
Sbjct: 521 NGHTPNEFT 529



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 82/368 (22%), Positives = 139/368 (37%), Gaps = 43/368 (11%)

Query: 31  ANKLELSRTLTTTMGLNEESISKATQMQIVDALCR-GERSRASHLLLNLGHAHHSLGADD 89
           A +++ +R L   M       +      IV  LC+ G    A   +  +         D 
Sbjct: 189 AGRVDEARKLVDLMIARGPPPTAVAYTSIVAGLCKCGRIQEAVKTIQEMRRRRLRPRVDT 248

Query: 90  F-FHILNYCARSPDPLFVMETWRMMEE---KEIGLNNKCYLLMMQALCKGGYLEEASNLI 145
           + F +  Y         V E + +MEE   ++   +   Y + ++AL   G  EEA  + 
Sbjct: 249 YSFIVTGYIGMGK----VEEAFAVMEEMADRDCAPDTISYTMFIEALYSIGRREEAEKVF 304

Query: 146 YFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVW 205
             + E+ G  P +  Y   +    K  SM  A   L LMD   V  N   YT ++   V 
Sbjct: 305 ETMVEK-GCKPDMHTYGIIIDNFCKEGSMAAATHVLRLMDKAAVKPNRYIYTMIMDGFVK 363

Query: 206 QKNLSAVHEIWEDYIKHYSL-SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYI 264
              L    E+++  +K   L S  +    + +  +L+ +  A E L+ M           
Sbjct: 364 SSRLEEALELYQRILKDGILPSTVTYNTVINALCKLKKMDEALELLREM----------- 412

Query: 265 NRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGL 324
                 + R   L+  I             ++S +IH  G+      A  L+ +M   G+
Sbjct: 413 ------QRRKEELEPSI------------VTYSMIIHGLGKVGMEERAFDLLAEMIDNGV 454

Query: 325 QPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL-SVECSKALELDLAE 383
            P   TY   I+ +     +   ME+L+ M +  + P D T  TL  + C    ++D A 
Sbjct: 455 IPDCFTYTSLIQTLAGAGKVSRAMELLEEMLKAGIFPDDHTYGTLVQILCRS--DVDAAW 512

Query: 384 ALLDQISR 391
            LL ++ R
Sbjct: 513 DLLQEMMR 520



 Score = 56.2 bits (134), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 82/391 (20%), Positives = 156/391 (39%), Gaps = 28/391 (7%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ ++    +  N     +   +M +   +P+  TY   +  +     +    +V + M
Sbjct: 108 TYTAIVDGLFKAGNYDAGLEYYEKMVASKCEPTLLTYTVLVDGLCKAHKVERACDVFEEM 167

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLD-QISRCTNPK--PFSAFLAACDTMDKP 411
            +   KP     ++L    SKA  +D A  L+D  I+R   P    +++ +A      + 
Sbjct: 168 IRKGHKPDIIAYSSLIDGLSKAGRVDEARKLVDLMIARGPPPTAVAYTSIVAGLCKCGRI 227

Query: 412 ERAIKIFAKM-RQKLRPDIRTYELLFSLF---GNVNAPYEEGNMFSQVDSAKRINAIEMD 467
           + A+K   +M R++LRP + TY  + + +   G V   +                A+  +
Sbjct: 228 QEAVKTIQEMRRRRLRPRVDTYSFIVTGYIGMGKVEEAF----------------AVMEE 271

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQE 524
           MA  +     IS    ++AL + G   E  + F         P   TY  ++ +  +   
Sbjct: 272 MADRDCAPDTISYTMFIEALYSIGRREEAEKVFETMVEKGCKPDMHTYGIIIDNFCKEGS 331

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
              A  + + M    + PN   Y +++D        + A  L   +++DG  P T+TY  
Sbjct: 332 MAAATHVLRLMDKAAVKPNRYIYTMIMDGFVKSSRLEEALELYQRILKDGILPSTVTYNT 391

Query: 585 LIKILLDYGDFDEALNLLDLVSL--EGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642
           +I  L      DEAL LL  +    E +   ++ Y+ I+    + G  +    ++ +M  
Sbjct: 392 VINALCKLKKMDEALELLREMQRRKEELEPSIVTYSMIIHGLGKVGMEERAFDLLAEMID 451

Query: 643 NKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           N V PD  T   +       G  + AME L+
Sbjct: 452 NGVIPDCFTYTSLIQTLAGAGKVSRAMELLE 482



 Score = 48.5 bits (114), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 39/204 (19%), Positives = 84/204 (41%), Gaps = 7/204 (3%)

Query: 482 NLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIP 541
           +LL AL   G + + + +F  S +     ++N +L       +      + ++MK  GI 
Sbjct: 2   SLLLALVRGGQLSDALGFFQSSISEPNVSSFNILLRGFAARDDFEVVNALLREMKARGIT 61

Query: 542 PNAATYNIMI-------DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGD 594
            N AT+ +++       D    +  F S +     +      P ++TYTA++  L   G+
Sbjct: 62  SNGATHGVILSALCARRDLDKAVSYFNSRTEEACRLFEAIEAPDSVTYTAIVDGLFKAGN 121

Query: 595 FDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHF 654
           +D  L   + +        +L Y  ++   C+  +++    + E+M +   +PD      
Sbjct: 122 YDAGLEYYEKMVASKCEPTLLTYTVLVDGLCKAHKVERACDVFEEMIRKGHKPDIIAYSS 181

Query: 655 VFSGYVNCGFHNSAMEALQVLSMR 678
           +  G    G  + A + + ++  R
Sbjct: 182 LIDGLSKAGRVDEARKLVDLMIAR 205


>gi|224114285|ref|XP_002316718.1| predicted protein [Populus trichocarpa]
 gi|222859783|gb|EEE97330.1| predicted protein [Populus trichocarpa]
          Length = 684

 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 93/438 (21%), Positives = 179/438 (40%), Gaps = 40/438 (9%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           +++ +IH   + Q++  A Q + + Q  G Q     Y   + +   +  +    E++  M
Sbjct: 260 TYNTLIHMLCKHQHADEALQFLREAQKRGFQVDKVGYSAIVDSYCKEGRMDQAKEIVNEM 319

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR--CT-NPKPFSAFLAA-CDTMDK 410
                 P   T   +    S+A E+  A  +L Q+ +  C  N   ++AFL   C   + 
Sbjct: 320 FTRGCIPDVVTYTAIINGFSQAGEVGQARKMLQQMYKHGCKPNTVSYTAFLKGLCQKGNS 379

Query: 411 PERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
            E    + A   Q   P+  TY ++   F        EG +    D  +       +M  
Sbjct: 380 SEAREMMKASEEQWWTPNAITYSVVMHGF------RREGKLSDACDVVR-------EMIG 426

Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYF--C-DSKTPLGTPTYNTVLHSLVEAQESHR 527
                + + +  LL++L   G + E  ++   C +    +    + TV+H   +  +   
Sbjct: 427 KGFFPTPVEINLLLQSLCRIGRVDEAKKFMEECLNMGCAVNAVNFTTVIHRFCQQDDIEA 486

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A+ +   M      P+A TY  +ID        + A+ L   M++ G  P  +TY  +I 
Sbjct: 487 ALSLLDDMYLSNKHPDAVTYTTIIDALGKKGRIEEATELTLKMLKKGIDPTPVTYRTVIH 546

Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
                G  ++ LNLLD +           +N +++K C  G ++  + ++ ++ +   + 
Sbjct: 547 RYGQIGRVEDLLNLLDKMLTRQECRTA--FNQVIEKLCTFGNLEAADKLLGKVLRTASRI 604

Query: 648 DPSTCHFVFSGYVNCGFHNSAME-ALQVLSMRM-----LCEEVST--LEEKRSDFEDLIL 699
           D +TCH +   Y+  G   SA + A ++ S  +     LCE+V    ++E +S+      
Sbjct: 605 DANTCHVLMESYLRKGIPLSAYKVACRMFSRSLIPDLKLCEKVCKKLMQEGKSE------ 658

Query: 700 AEDSEAESRILQFCEDSN 717
               EA++  L+F E  N
Sbjct: 659 ----EADNLFLRFVERGN 672



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 85/394 (21%), Positives = 155/394 (39%), Gaps = 29/394 (7%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A +L+ +M   G  P   +Y   +  +  +R +R  M+V++ M+   L     T  TL  
Sbjct: 207 AMELISEMPLKGCSPDKVSYYTVMGFLCKNRRIREVMDVIEKMEDTKLLADQVTYNTLIH 266

Query: 372 ECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLRP 427
              K    D A   L +  +     +   +SA + +     + ++A +I  +M  +   P
Sbjct: 267 MLCKHQHADEALQFLREAQKRGFQVDKVGYSAIVDSYCKEGRMDQAKEIVNEMFTRGCIP 326

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL 487
           D+ TY  +              N FSQ     +   +   M ++  + + +S    LK L
Sbjct: 327 DVVTYTAII-------------NGFSQAGEVGQARKMLQQMYKHGCKPNTVSYTAFLKGL 373

Query: 488 GAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNA 544
             +G   E  +    S+    TP   TY+ V+H      +   A ++ ++M   G  P  
Sbjct: 374 CQKGNSSEAREMMKASEEQWWTPNAITYSVVMHGFRREGKLSDACDVVREMIGKGFFPTP 433

Query: 545 ATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDL 604
              N+++     I     A   +   +  G     + +T +I       D + AL+LLD 
Sbjct: 434 VEINLLLQSLCRIGRVDEAKKFMEECLNMGCAVNAVNFTTVIHRFCQQDDIEAALSLLDD 493

Query: 605 VSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGF 664
           + L     D + Y TI+    +KGRI+    +  +M +  + P P T   V   Y   G 
Sbjct: 494 MYLSNKHPDAVTYTTIIDALGKKGRIEEATELTLKMLKKGIDPTPVTYRTVIHRYGQIG- 552

Query: 665 HNSAMEALQVLSMRMLCEEVSTLEEKRSDFEDLI 698
                   +V  +  L +++ T +E R+ F  +I
Sbjct: 553 --------RVEDLLNLLDKMLTRQECRTAFNQVI 578



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 76/196 (38%), Gaps = 35/196 (17%)

Query: 513 NTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVR 572
           NT +H LV A    +A+   ++M+  GI PN  TYN +I     +   + A  L+S M  
Sbjct: 157 NTAIHVLVMANMLEKALRFLERMQLLGIMPNVVTYNCLIKGYCDLHRVEDAMELISEMPL 216

Query: 573 DGFYPQTM-----------------------------------TYTALIKILLDYGDFDE 597
            G  P  +                                   TY  LI +L  +   DE
Sbjct: 217 KGCSPDKVSYYTVMGFLCKNRRIREVMDVIEKMEDTKLLADQVTYNTLIHMLCKHQHADE 276

Query: 598 ALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFS 657
           AL  L      G   D + Y+ I+   C++GR+D  + I+ +M      PD  T   + +
Sbjct: 277 ALQFLREAQKRGFQVDKVGYSAIVDSYCKEGRMDQAKEIVNEMFTRGCIPDVVTYTAIIN 336

Query: 658 GYVNCGFHNSAMEALQ 673
           G+   G    A + LQ
Sbjct: 337 GFSQAGEVGQARKMLQ 352



 Score = 63.2 bits (152), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 66/321 (20%), Positives = 128/321 (39%), Gaps = 51/321 (15%)

Query: 344 LRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLA 403
           LRN M+VL +MQ+  ++P         + C+ A+ + +   +L                 
Sbjct: 134 LRNAMQVLTMMQKAGIEPN-------LLVCNTAIHVLVMANML----------------- 169

Query: 404 ACDTMDKPERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRIN 462
                   E+A++   +M+   + P++ TY  L   + +++   +   + S+        
Sbjct: 170 --------EKALRFLERMQLLGIMPNVVTYNCLIKGYCDLHRVEDAMELISE-------- 213

Query: 463 AIEMDMARNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSL 519
                M         +S   ++  L     IRE   +I+   D+K      TYNT++H L
Sbjct: 214 -----MPLKGCSPDKVSYYTVMGFLCKNRRIREVMDVIEKMEDTKLLADQVTYNTLIHML 268

Query: 520 VEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC-CSIIRCFKSASALVSMMVRDGFYPQ 578
            + Q +  A++  ++ +  G   +   Y+ ++D  C   R    A  +V+ M   G  P 
Sbjct: 269 CKHQHADEALQFLREAQKRGFQVDKVGYSAIVDSYCKEGR-MDQAKEIVNEMFTRGCIPD 327

Query: 579 TMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIE 638
            +TYTA+I      G+  +A  +L  +   G   + + Y   LK  C+KG       +++
Sbjct: 328 VVTYTAIINGFSQAGEVGQARKMLQQMYKHGCKPNTVSYTAFLKGLCQKGNSSEAREMMK 387

Query: 639 QMHQNKVQPDPSTCHFVFSGY 659
              +    P+  T   V  G+
Sbjct: 388 ASEEQWWTPNAITYSVVMHGF 408



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 76/168 (45%), Gaps = 4/168 (2%)

Query: 509 TPT-YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALV 567
           TP  +  V+ S   A +   AM++   M+  GI PN    N  I    +    + A   +
Sbjct: 117 TPQDFCCVMVSYSRAGKLRNAMQVLTMMQKAGIEPNLLVCNTAIHVLVMANMLEKALRFL 176

Query: 568 SMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEK 627
             M   G  P  +TY  LIK   D    ++A+ L+  + L+G   D + Y T++   C+ 
Sbjct: 177 ERMQLLGIMPNVVTYNCLIKGYCDLHRVEDAMELISEMPLKGCSPDKVSYYTVMGFLCKN 236

Query: 628 GRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
            RI  +  +IE+M   K+  D  T + +   ++ C  H  A EALQ L
Sbjct: 237 RRIREVMDVIEKMEDTKLLADQVTYNTLI--HMLCK-HQHADEALQFL 281


>gi|297605515|ref|NP_001057291.2| Os06g0249500 [Oryza sativa Japonica Group]
 gi|255676892|dbj|BAF19205.2| Os06g0249500 [Oryza sativa Japonica Group]
          Length = 690

 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 75/152 (49%)

Query: 507 LGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASAL 566
           L T  YN ++      +  H A E+ ++MK  GI P+  TYN ++        F +   L
Sbjct: 386 LDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCKAGDFAAVDEL 445

Query: 567 VSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE 626
           +  M+ DG  P  +T+  L+      G  DEAL +L  +   GI  + ++YNT++   C+
Sbjct: 446 LGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNNVIYNTLIDFLCK 505

Query: 627 KGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
           +G +D+   + ++M +  V  + +T + +  G
Sbjct: 506 RGDVDLAIELFDEMKEKSVPANVTTFNALLKG 537



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 83/361 (22%), Positives = 146/361 (40%), Gaps = 33/361 (9%)

Query: 330 TYDGFIRAIVSDRGLRNGMEVLKIMQQ-NNLKPQDSTIATLSVECSKALELDLAEALLDQ 388
            ++  + A+   R +     +  +MQ   +++P   T   L     KA  +  A  +LD 
Sbjct: 138 AFNSILAALARVRDVPGMARIYALMQGCASVRPDVVTYGILVNGLCKAGRVGDALRVLDG 197

Query: 389 ISRCT-NPKPFSAFL-AACDTMDKPERAIKIFAKMRQKLR------PDIRTYELLFSLF- 439
           +SR   + +P    L    D + K  R  +  A + Q++       P+  TY  L   F 
Sbjct: 198 MSRQDLDIRPDVVTLNTVVDGLCKSGRVQEALAFVEQRMSSVHGCPPNTVTYNCLIDAFC 257

Query: 440 --GNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELI 497
             GN++  YE                +   M    +  + +++  ++  L   G     +
Sbjct: 258 RVGNISMAYE----------------LVEKMENEGVPQNIVTLNTIVGGLCRAGRTGAAL 301

Query: 498 QYFCDSKT--PLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID 552
           ++F + +T  P G     TY+T++ +L+       AME+F +  + G  P+A  Y  MI 
Sbjct: 302 EFFREKRTVWPEGKGNAVTYSTLVGALLHTNNVGMAMELFHEKMSEGHSPDAIMYFTMIS 361

Query: 553 CCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPH 612
             +     + A ++ S M   GF   T  Y  LI          EA  LL  +   GI  
Sbjct: 362 GLTQAGRLEDACSMASSMKEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRP 421

Query: 613 DVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEAL 672
           DV  YNT+L  +C+ G    ++ ++ +M  +  QP   T   +  GY   G  + A+  L
Sbjct: 422 DVCTYNTLLSGSCKAGDFAAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRIL 481

Query: 673 Q 673
           +
Sbjct: 482 R 482



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 70/328 (21%), Positives = 139/328 (42%), Gaps = 51/328 (15%)

Query: 381 LAEALLDQI-SRCTNPKPFSAF--------------------LAACDTMDKPERAIKIFA 419
           L  A+L ++ +R ++P+P + F                    LAA   +       +I+A
Sbjct: 101 LLSAILSKLLARFSSPEPAARFLAASLAAGAPAPDVFAFNSILAALARVRDVPGMARIYA 160

Query: 420 KMR--QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMD-MARN--NIQ 474
            M+    +RPD+ TY +L      VN   + G    +V  A R+    +D M+R   +I+
Sbjct: 161 LMQGCASVRPDVVTYGIL------VNGLCKAG----RVGDALRV----LDGMSRQDLDIR 206

Query: 475 HSHISMKNLLKALGAEGMIRELIQYFCDSKT-----PLGTPTYNTVLHSLVEAQESHRAM 529
              +++  ++  L   G ++E + +     +     P  T TYN ++ +         A 
Sbjct: 207 PDVVTLNTVVDGLCKSGRVQEALAFVEQRMSSVHGCPPNTVTYNCLIDAFCRVGNISMAY 266

Query: 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQ----TMTYTAL 585
           E+ ++M+  G+P N  T N ++    + R  ++ +AL     +   +P+     +TY+ L
Sbjct: 267 ELVEKMENEGVPQNIVTLNTIVG--GLCRAGRTGAALEFFREKRTVWPEGKGNAVTYSTL 324

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           +  LL   +   A+ L      EG   D ++Y T++    + GR++    +   M +   
Sbjct: 325 VGALLHTNNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMASSMKEAGF 384

Query: 646 QPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           + D    + + +G+      + A E LQ
Sbjct: 385 KLDTKAYNILIAGFCRKKRLHEAYELLQ 412



 Score = 40.0 bits (92), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 80/441 (18%), Positives = 161/441 (36%), Gaps = 90/441 (20%)

Query: 128 MMQALCKGGYLEEASNLIYFLGER----YGIYPILPVYNSFLGACAKLHSMVHANLCLDL 183
           ++  LCK G ++EA   + F+ +R    +G  P    YN  + A  ++ ++  A   ++ 
Sbjct: 215 VVDGLCKSGRVQEA---LAFVEQRMSSVHGCPPNTVTYNCLIDAFCRVGNISMAYELVEK 271

Query: 184 MDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDL 243
           M++  V +N VT   ++          A            +L  F  ++ VW   +   +
Sbjct: 272 MENEGVPQNIVTLNTIVGGLCRAGRTGA------------ALEFFREKRTVWPEGKGNAV 319

Query: 244 KSAYETLQ----HMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDV 299
              Y TL     H   + M  +L+  + SEG    +               ++ ++    
Sbjct: 320 --TYSTLVGALLHTNNVGMAMELFHEKMSEGHSPDA---------------IMYFTMISG 362

Query: 300 IHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNL 359
           +   GR ++   A  +   M+  G +  +  Y+  I      + L    E+L+ M++  +
Sbjct: 363 LTQAGRLED---ACSMASSMKEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGI 419

Query: 360 KPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFA 419
           +P   T  TL     KA +    + LL ++                              
Sbjct: 420 RPDVCTYNTLLSGSCKAGDFAAVDELLGKM------------------------------ 449

Query: 420 KMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHIS 479
            +    +P + T+  L   +  V           ++D A RI      M  + I  +++ 
Sbjct: 450 -IDDGCQPSVITFGTLVHGYCKVG----------KIDEALRI---LRSMDESGIHPNNVI 495

Query: 480 MKNLLKALGAEGMIRELIQYFCDSK---TPLGTPTYNTVLHSLVEAQESHRAMEIFKQMK 536
              L+  L   G +   I+ F + K    P    T+N +L  L +     +A E+  QM+
Sbjct: 496 YNTLIDFLCKRGDVDLAIELFDEMKEKSVPANVTTFNALLKGLRDKNMPEKAFELMDQMR 555

Query: 537 TCGIPPNAATYNIMIDCCSII 557
                P+  T +++++   +I
Sbjct: 556 EERCFPDYVTVDVLMEWLPVI 576


>gi|215768057|dbj|BAH00286.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 506

 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 81/378 (21%), Positives = 145/378 (38%), Gaps = 47/378 (12%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           +S++ VI    R    G A ++  +M    + P+  TY+  I   +    L  G  +   
Sbjct: 16  FSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQ 75

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPER 413
           M  + LKP   T   L     +A  +    ALLD+++                       
Sbjct: 76  MVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMAS---------------------- 113

Query: 414 AIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNI 473
                    QK+ PD  TY +LF             +  S+   +K + ++     +N +
Sbjct: 114 ---------QKMVPDGFTYSILF-------------DGLSRNGDSKAMLSLFGKYLKNGV 151

Query: 474 QHSHISMKNLLKALGAEGMI---RELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAME 530
                +   LL  L  +G +    E++Q   ++        YNT+++   +  E   A  
Sbjct: 152 TIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFS 211

Query: 531 IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590
            F QMK+  I P+  TYN +I+         +A  L+  M  +G  P   T+  LI    
Sbjct: 212 TFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYG 271

Query: 591 DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650
             G  ++   +L  +   G+  +V+ Y +I+   C+ G+I     I++ M    V P+  
Sbjct: 272 RTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQ 331

Query: 651 TCHFVFSGYVNCGFHNSA 668
             + +   YV  G ++ A
Sbjct: 332 VYNAIIDAYVEHGPNDQA 349



 Score = 76.3 bits (186), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 105/502 (20%), Positives = 193/502 (38%), Gaps = 45/502 (8%)

Query: 228 FSLRKFVWSFTRLRDLKSAYETLQHMVALAMM-GKLYINRTSEGRLRSSRLDIPIPLNAL 286
           FS    +    R      A E    M   A++   +  N   +G ++   L+    L   
Sbjct: 16  FSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQ 75

Query: 287 PVMKVLR---WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRG 343
            V   L+    +++ ++    R    G    L+ +M S  + P     DGF  +I+ D  
Sbjct: 76  MVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVP-----DGFTYSILFDGL 130

Query: 344 LRNG-----MEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT---NP 395
            RNG     + +     +N +   D T + L     K  ++ +AE +L  +         
Sbjct: 131 SRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTR 190

Query: 396 KPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQ 454
             ++  +       + E A   F +M+ + ++PD  TY  L              N   +
Sbjct: 191 VIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALI-------------NGLCK 237

Query: 455 VDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---T 511
            +       + M+M  N +  +  +   L+ A G  G + +      + +     P   +
Sbjct: 238 AERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVS 297

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           Y +++++  +  +   A+ I   M    + PNA  YN +ID          A  LV  M 
Sbjct: 298 YGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMK 357

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
            +G  P  +TY  LIK L +     EA  +++ +S   +  D + YNT++   C +G ID
Sbjct: 358 SNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNID 417

Query: 632 VIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEV------- 684
               + ++MH+  ++    T H + SG    G  N     ++ L  +M+   V       
Sbjct: 418 KALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNE----MEYLYQKMMQNNVVPSNAIH 473

Query: 685 STLEEKRSDFEDLILAEDSEAE 706
           + + E  S + + I AED   E
Sbjct: 474 NIMVEAYSKYGNEIKAEDLRKE 495



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 95/464 (20%), Positives = 190/464 (40%), Gaps = 32/464 (6%)

Query: 107 METWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGER---YGIYPILPVYNS 163
           +E +  M E+ +  N+  Y  M+    KGG LE      + L ++   +G+ P    YN 
Sbjct: 35  VEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAG----FRLRDQMVCHGLKPNAITYNV 90

Query: 164 FLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH- 222
            L    +   M   +  LD M S+ +  +  TY+ L        +  A+  ++  Y+K+ 
Sbjct: 91  LLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNG 150

Query: 223 YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMM-GKLYINRTSEGRLRSSRLDIPI 281
            ++  ++    +    +   +  A E LQ +V   ++  ++  N    G  ++  L+   
Sbjct: 151 VTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAF 210

Query: 282 PLNALPVMKVLR---WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAI 338
                   + ++    +++ +I+   + +    A+ L+++MQ  G+ P+  T++  I A 
Sbjct: 211 STFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAY 270

Query: 339 VSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI---SRCTNP 395
                L     VL  MQ+N LKP   +  ++     K  ++  A A+LD +       N 
Sbjct: 271 GRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNA 330

Query: 396 KPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQ 454
           + ++A + A       ++A  +  KM+   + P I TY LL     N           SQ
Sbjct: 331 QVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQ----------SQ 380

Query: 455 VDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIR---ELIQYFCDSKTPLGTPT 511
           +  A+ I      ++ + +    +S   L+ A    G I    +L Q            T
Sbjct: 381 ISEAEEIIN---SLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRT 437

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCS 555
           Y+ ++  L  A   +    ++++M    + P+ A +NIM++  S
Sbjct: 438 YHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYS 481



 Score = 60.1 bits (144), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 70/174 (40%)

Query: 502 DSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFK 561
           D   P    +YN V+  +  A     A+E+F +M    + PN  TYN MID        +
Sbjct: 8   DGAPPPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLE 67

Query: 562 SASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTIL 621
           +   L   MV  G  P  +TY  L+  L   G   E   LLD ++ + +  D   Y+ + 
Sbjct: 68  AGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILF 127

Query: 622 KKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
                 G    +  +  +  +N V     TC  + +G    G  + A E LQ L
Sbjct: 128 DGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSL 181



 Score = 38.9 bits (89), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 64/338 (18%), Positives = 136/338 (40%), Gaps = 23/338 (6%)

Query: 59  IVDALCRGERSRASHLLLNLGHAHHSLGADDFFH--ILNYCARSPDPLFVMETWRMMEEK 116
           ++  LCR  R   +  LL+   A   +  D F +  + +  +R+ D   ++  +    + 
Sbjct: 91  LLSGLCRAGRMGETSALLDE-MASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKN 149

Query: 117 EIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVH 176
            + + +    +++  LCK G +  A  ++  L    G+ P   +YN+ +    +   +  
Sbjct: 150 GVTIGDYTCSILLNGLCKDGKVSIAEEVLQSL-VNAGLVPTRVIYNTLINGYCQTGELEG 208

Query: 177 ANLCLDLMDSRMVGKNEVTYTELLK-LAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVW 235
           A      M SR +  + +TY  L+  L   ++  +A   + E      + ++ +    + 
Sbjct: 209 AFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLID 268

Query: 236 SFTRLRDLKSAYETLQHMVALAM------MGKLYINRTSEGRLRSSR--LDIPIPLNALP 287
           ++ R   L+  +  L  M    +       G +       G++  +   LD     + LP
Sbjct: 269 AYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLP 328

Query: 288 VMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNG 347
             +V    ++ +I A      +  A  L+ +M+S G+ PS  TY+  I+ + +   +   
Sbjct: 329 NAQV----YNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEA 384

Query: 348 MEVLKIMQQNNLKPQDSTIATLSVEC------SKALEL 379
            E++  +  + L P   +  TL   C       KAL+L
Sbjct: 385 EEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDL 422


>gi|34015232|gb|AAQ56425.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|34015270|gb|AAQ56462.1| putative fertility restorer [Oryza sativa Japonica Group]
          Length = 1007

 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 75/360 (20%), Positives = 157/360 (43%), Gaps = 22/360 (6%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A +L + M++ G +P+ +TY   I  +     L+  + +   M ++ + P   T   L  
Sbjct: 339 AWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALIN 398

Query: 372 ECSKALELDLAEALLDQISR--CT-NPKPFSAFLAACDTMDKPERAIKIFAKMRQKLR-P 427
              +   +  A  +L+ + R  C+ N   ++  +     +  P++A+ +   M Q+    
Sbjct: 399 ILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSA 458

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMK----NL 483
           ++ TY  +      +    + GN      SA RI  +  D      + S+  +      +
Sbjct: 459 NLVTYNTI------IKGYCDSGN----TTSALRILDLMRDGGCKPDEWSYTELICGFCKI 508

Query: 484 LKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPN 543
            K   A G+  E++    D   P    TY  ++    + ++   A  + + MK  G  PN
Sbjct: 509 SKMESAFGLFNEMVD---DGLCP-NEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPN 564

Query: 544 AATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLD 603
             TYN++I   +    F  A  L  +M+ +G +P  +TYTA+I  L   G    AL + +
Sbjct: 565 VQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFN 624

Query: 604 LVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
            +  +G   ++L Y+++++   ++G+++  E +  ++ ++ + PD  T   +   Y+  G
Sbjct: 625 KMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSG 684



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 97/418 (23%), Positives = 166/418 (39%), Gaps = 57/418 (13%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           ++ VI+A  +  N   AE +M ++    + P + TY   I        L + ++V   M 
Sbjct: 218 YNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMA 277

Query: 356 QNNLKPQDSTIATL------SVECSKALELD---LAEALLDQISRCTNPKPFSAFLAACD 406
           +   +P   T +TL      S   ++A +L    +   +L     CT P      +A CD
Sbjct: 278 KEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGP-----IIALCD 332

Query: 407 TMDKPERAIKIFAKMRQK-LRPDIRTYELLFS----------LFGNVNAPYEEGNMFSQV 455
            M   E A ++F  M+ K   P++ TY  L S            G  +    +G   + V
Sbjct: 333 -MGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTV 391

Query: 456 DSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMI---RELIQYFCDSKTPLGTP-- 510
                IN +   +    I+++ + + NL+   G    I    E+I+ +C     LG P  
Sbjct: 392 TYNALINIL---VENRRIKYAFVVL-NLMGRNGCSPNIVTYNEMIKGYC----ILGDPKK 443

Query: 511 ------------------TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID 552
                             TYNT++    ++  +  A+ I   M+  G  P+  +Y  +I 
Sbjct: 444 AMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELIC 503

Query: 553 CCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPH 612
               I   +SA  L + MV DG  P  +TYTALI         D A +LL+ +   G   
Sbjct: 504 GFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRP 563

Query: 613 DVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAME 670
           +V  YN ++    ++      E + + M +  + P+  T   +  G    G  + A+E
Sbjct: 564 NVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALE 621



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 90/211 (42%), Gaps = 3/211 (1%)

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTV---LHSLVEAQE 524
           MA+   + + ++   L+  L   G + E      +       PT +T    + +L +   
Sbjct: 276 MAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGC 335

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
              A  +F  MK  G  PN  TY  +I    +    K A  L   M RDG +P T+TY A
Sbjct: 336 YEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNA 395

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
           LI IL++      A  +L+L+   G   +++ YN ++K  C  G       ++  M Q  
Sbjct: 396 LINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRG 455

Query: 645 VQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
              +  T + +  GY + G   SA+  L ++
Sbjct: 456 HSANLVTYNTIIKGYCDSGNTTSALRILDLM 486



 Score = 70.9 bits (172), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 118/573 (20%), Positives = 222/573 (38%), Gaps = 71/573 (12%)

Query: 106 VMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNS-F 164
           VM+ +  M  + +  N   Y  ++ ALCK G + +A  ++  + E   + P    Y S  
Sbjct: 199 VMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESE-MSPDTFTYTSMI 257

Query: 165 LGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYS 224
           LG C K H +  A    + M       N VTY+ L+        ++   ++  + I H  
Sbjct: 258 LGHCRK-HDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILH-- 314

Query: 225 LSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMG------KLYINRTSEGRLRSSRLD 278
                             L +A+     ++AL  MG      +L+++  ++G        
Sbjct: 315 ----------------GILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKG-------- 350

Query: 279 IPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAI 338
                   P +    ++++ +I     +    +A  L  +M   G+ P++ TY+  I  +
Sbjct: 351 ------CEPNV----YTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINIL 400

Query: 339 VSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLD-----QISRCT 393
           V +R ++    VL +M +N   P   T   +       +  D  +A+L      Q     
Sbjct: 401 VENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIK--GYCILGDPKKAMLVMNNMLQRGHSA 458

Query: 394 NPKPFSAFLAA-CDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNM 451
           N   ++  +   CD+ +    A++I   MR    +PD  +Y  L   F  ++       +
Sbjct: 459 NLVTYNTIIKGYCDSGNTTS-ALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGL 517

Query: 452 FSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMI---RELIQYFCDSKTPLG 508
           F++             M  + +  + ++   L+     +  +     L+++   S     
Sbjct: 518 FNE-------------MVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPN 564

Query: 509 TPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVS 568
             TYN ++H L +      A E+ K M   GI PN  TY  MID          A  + +
Sbjct: 565 VQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFN 624

Query: 569 MMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
            M+  G  P  +TY++LI+ L   G  +EA NL   +   G+  D + Y  +++     G
Sbjct: 625 KMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSG 684

Query: 629 RIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVN 661
           +++     + +M +   QP   T   +  G  N
Sbjct: 685 KVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKN 717


>gi|384251704|gb|EIE25181.1| TPR-like protein [Coccomyxa subellipsoidea C-169]
          Length = 905

 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 71/310 (22%), Positives = 128/310 (41%), Gaps = 22/310 (7%)

Query: 329 HTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLD- 387
           +TY   I   +  + +   M++ K M+  N++    T   L   C K     LA    + 
Sbjct: 211 YTYTAMISMCIYQQDVDRAMDLAKEMRVRNIERNVHTYTALMNVCIKCGNCPLALDTYNH 270

Query: 388 --QISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNA 444
             Q   C N   ++  +     M   E+ IK+   M+ + + P +RTY  L         
Sbjct: 271 MRQDGACPNVVTYNTLIDVYGKMGLWEQGIKVLTLMKTEGVEPVLRTYNTLIIACNMCGQ 330

Query: 445 PYEEGNMFSQ-VDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCD- 502
           P E   ++ + +D     NA               +   L+ A G  G + ++++ F + 
Sbjct: 331 PREAMAVYKRMLDEGYSPNAT--------------TYNALISAYGKAGQLDKVMEVFQEM 376

Query: 503 --SKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCF 560
                     TY++++ +  +A +   A+E+F +M   G  PN  TYN +I  C+    +
Sbjct: 377 VHKGCERSVITYSSLISACEKAGQWELALELFNEMAGEGCIPNTVTYNSLITACAQGAQW 436

Query: 561 KSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTI 620
           + AS +   M + G  P  +T+TALI      G +  AL   + + L+    D +++N I
Sbjct: 437 EKASEVFEQMQKGGCTPDVVTFTALISSYEKGGQWRRALGAYEQMRLQRCKPDAIVFNAI 496

Query: 621 LKKACEKGRI 630
           +    E G I
Sbjct: 497 IDTLWETGVI 506



 Score = 76.3 bits (186), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 66/285 (23%), Positives = 123/285 (43%), Gaps = 17/285 (5%)

Query: 398 FSAFLAACDTMDKPERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVD 456
           ++A ++ C      +RA+ +  +MR + +  ++ TY  L      +N   + GN    +D
Sbjct: 213 YTAMISMCIYQQDVDRAMDLAKEMRVRNIERNVHTYTAL------MNVCIKCGNCPLALD 266

Query: 457 SAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYN 513
           +    N +  D A  N+    ++   L+   G  G+  + I+     KT    P   TYN
Sbjct: 267 T---YNHMRQDGACPNV----VTYNTLIDVYGKMGLWEQGIKVLTLMKTEGVEPVLRTYN 319

Query: 514 TVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRD 573
           T++ +     +   AM ++K+M   G  PNA TYN +I              +   MV  
Sbjct: 320 TLIIACNMCGQPREAMAVYKRMLDEGYSPNATTYNALISAYGKAGQLDKVMEVFQEMVHK 379

Query: 574 GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVI 633
           G     +TY++LI      G ++ AL L + ++ EG   + + YN+++    +  + +  
Sbjct: 380 GCERSVITYSSLISACEKAGQWELALELFNEMAGEGCIPNTVTYNSLITACAQGAQWEKA 439

Query: 634 EFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678
             + EQM +    PD  T   + S Y   G    A+ A + + ++
Sbjct: 440 SEVFEQMQKGGCTPDVVTFTALISSYEKGGQWRRALGAYEQMRLQ 484



 Score = 60.5 bits (145), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 82/186 (44%), Gaps = 2/186 (1%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TYNT++    +     + +++   MKT G+ P   TYN +I  C++    + A A+   M
Sbjct: 282 TYNTLIDVYGKMGLWEQGIKVLTLMKTEGVEPVLRTYNTLIIACNMCGQPREAMAVYKRM 341

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEK-GR 629
           + +G+ P   TY ALI      G  D+ + +   +  +G    V+ Y++++  ACEK G+
Sbjct: 342 LDEGYSPNATTYNALISAYGKAGQLDKVMEVFQEMVHKGCERSVITYSSLI-SACEKAGQ 400

Query: 630 IDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEE 689
            ++   +  +M      P+  T + + +          A E  + +       +V T   
Sbjct: 401 WELALELFNEMAGEGCIPNTVTYNSLITACAQGAQWEKASEVFEQMQKGGCTPDVVTFTA 460

Query: 690 KRSDFE 695
             S +E
Sbjct: 461 LISSYE 466



 Score = 47.4 bits (111), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 79/175 (45%), Gaps = 12/175 (6%)

Query: 288 VMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNG 347
           V  VLR +++ +I AC        A  +  +M   G  P++ TY+  I A      L   
Sbjct: 311 VEPVLR-TYNTLIIACNMCGQPREAMAVYKRMLDEGYSPNATTYNALISAYGKAGQLDKV 369

Query: 348 MEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAA 404
           MEV + M     +    T ++L   C KA + +LA  L ++++      N   +++ + A
Sbjct: 370 MEVFQEMVHKGCERSVITYSSLISACEKAGQWELALELFNEMAGEGCIPNTVTYNSLITA 429

Query: 405 CDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSA 458
           C    + E+A ++F +M++    PD+ T+  L S        YE+G  + +   A
Sbjct: 430 CAQGAQWEKASEVFEQMQKGGCTPDVVTFTALIS-------SYEKGGQWRRALGA 477


>gi|302770561|ref|XP_002968699.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
 gi|300163204|gb|EFJ29815.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
          Length = 544

 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 85/416 (20%), Positives = 163/416 (39%), Gaps = 73/416 (17%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDST----IA 367
           A +L  +MQ+    P+S +++  +R       +R+ +  L+ M++++      T    + 
Sbjct: 86  ALKLFREMQAGPFLPTSASHNILLRGFFMAGRVRDALAHLQDMRKSSSSVATGTYNLVLK 145

Query: 368 TLSVECSKALELDLAEALLDQISRCTNPKP----FSAFLAACDTMDKPERAIKIFAKMRQ 423
            L  E   A  L+ A     ++ + +  +P    +   L+A     +   A  +F+ M  
Sbjct: 146 GLCWENKSANRLEQAMEFFKEM-KASGVEPDLESYHILLSALSDSGRMAEAHALFSAM-- 202

Query: 424 KLRPDIRTYELLFSLFGNVNAPYE-------------EGNMFS---------QVDSAKRI 461
              PDI TY +L   +  +   YE             E N+F+         ++D  +  
Sbjct: 203 TCSPDIMTYNVLMDGYCKIGQTYEAQSLMKEILKAGYEPNVFTYSIIINCYCKLDKVEEA 262

Query: 462 NAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYF--------------------- 500
             + M M  +N   + ++   L+      GM+ + I+ F                     
Sbjct: 263 WEVFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDS 322

Query: 501 -CDSKTPLGTP-----------------TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPP 542
            C  +  + T                  TYN+++    +A+    AM+ F +M+     P
Sbjct: 323 LCKKRGGVYTAVDLFNKLEGAGLTPTIVTYNSLIQGFCDARRLSEAMQYFDEMEG-KCAP 381

Query: 543 NAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL 602
           N  TY+I+ID    +R  K A+  +  M   G+ P  +TY  LI      G+   AL   
Sbjct: 382 NVITYSILIDGLCKVRRMKEAAKTLEDMKAHGYTPTVVTYGGLINGFCKCGELKSALLFF 441

Query: 603 DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
           + + L G   + +++NT++   C+  R +    ++  MH    +PD  T + + SG
Sbjct: 442 EKMKLAGCAPNTVIFNTLIDGLCKAERANDGLRLLCHMHAEGCKPDVITYNCLISG 497



 Score = 65.1 bits (157), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 74/360 (20%), Positives = 142/360 (39%), Gaps = 34/360 (9%)

Query: 326 PSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEAL 385
           P++HTY+  IR       +   + V   M+ + L P  ST+ TL +   +  ++  A  L
Sbjct: 30  PNAHTYNVLIRGFCKGGQMHQAVSVFSDMKSSGLLPNASTMNTLLLGLCEIGQMSSALKL 89

Query: 386 LDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLR--PDIR---------TYEL 434
             ++           FL    + +   R   +  ++R  L    D+R         TY L
Sbjct: 90  FREMQA-------GPFLPTSASHNILLRGFFMAGRVRDALAHLQDMRKSSSSVATGTYNL 142

Query: 435 LFSLFGNVNAPYEEGNMFSQVDSAKRI-NAIEM--DMARNNIQHSHISMKNLLKALGAEG 491
           +               +  +  SA R+  A+E   +M  + ++    S   LL AL   G
Sbjct: 143 VLK------------GLCWENKSANRLEQAMEFFKEMKASGVEPDLESYHILLSALSDSG 190

Query: 492 MIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI 551
            + E    F          TYN ++    +  +++ A  + K++   G  PN  TY+I+I
Sbjct: 191 RMAEAHALFSAMTCSPDIMTYNVLMDGYCKIGQTYEAQSLMKEILKAGYEPNVFTYSIII 250

Query: 552 DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIP 611
           +C   +   + A  +   M+     P  +T+  LI      G  ++A+ L   +   G  
Sbjct: 251 NCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIGCK 310

Query: 612 HDVLLYNTILKKACEK-GRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAME 670
             ++ YNT++   C+K G +     +  ++    + P   T + +  G+ +    + AM+
Sbjct: 311 ATIVTYNTLIDSLCKKRGGVYTAVDLFNKLEGAGLTPTIVTYNSLIQGFCDARRLSEAMQ 370



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 71/322 (22%), Positives = 118/322 (36%), Gaps = 34/322 (10%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A+ LM ++   G +P+  TY   I        +    EV   M ++N  P   T  TL  
Sbjct: 227 AQSLMKEILKAGYEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIA 286

Query: 372 ECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPE----RAIKIFAKMR-QKLR 426
              KA  L+ A  L  ++ +         +    D++ K       A+ +F K+    L 
Sbjct: 287 GFCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSLCKKRGGVYTAVDLFNKLEGAGLT 346

Query: 427 PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM-------------------- 466
           P I TY  L   F +     E    F +++     N I                      
Sbjct: 347 PTIVTYNSLIQGFCDARRLSEAMQYFDEMEGKCAPNVITYSILIDGLCKVRRMKEAAKTL 406

Query: 467 -DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPT---YNTVLHSLVEA 522
            DM  +    + ++   L+      G ++  + +F   K     P    +NT++  L +A
Sbjct: 407 EDMKAHGYTPTVVTYGGLINGFCKCGELKSALLFFEKMKLAGCAPNTVIFNTLIDGLCKA 466

Query: 523 QESHRAMEIFKQMKTCGIPPNAATYNIMID-CCSIIRCFKSASALVSMMVRDGFYPQTMT 581
           + ++  + +   M   G  P+  TYN +I   CS  R  + A  L   M      P   T
Sbjct: 467 ERANDGLRLLCHMHAEGCKPDVITYNCLISGLCSANR-VEDAQRLFDGMA---CAPNVTT 522

Query: 582 YTALIKILLDYGDFDEALNLLD 603
           +  LI+ L      +EA N+LD
Sbjct: 523 FNFLIRGLCAQKKVEEARNILD 544



 Score = 43.5 bits (101), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 61/295 (20%), Positives = 119/295 (40%), Gaps = 21/295 (7%)

Query: 59  IVDALCR-GERSRASHLLLNLGHAHHSLGADDFFHILN-YCARSPDPLFVMETWRM---M 113
           ++D  C+ G+   A  L+  +  A +      +  I+N YC        V E W +   M
Sbjct: 214 LMDGYCKIGQTYEAQSLMKEILKAGYEPNVFTYSIIINCYCKLDK----VEEAWEVFMKM 269

Query: 114 EEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGA-CAKLH 172
            E     N   +  ++   CK G LE+A  L   + E+ G    +  YN+ + + C K  
Sbjct: 270 IESNCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEM-EKIGCKATIVTYNTLIDSLCKKRG 328

Query: 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRK 232
            +  A    + ++   +    VTY  L++     + LS   + +++     + ++ +   
Sbjct: 329 GVYTAVDLFNKLEGAGLTPTIVTYNSLIQGFCDARRLSEAMQYFDEMEGKCAPNVITYSI 388

Query: 233 FVWSFTRLRDLKSAYETLQHMVA------LAMMGKLYINRTSEGRLRSSRLDI-PIPLNA 285
            +    ++R +K A +TL+ M A      +   G L       G L+S+ L    + L  
Sbjct: 389 LIDGLCKVRRMKEAAKTLEDMKAHGYTPTVVTYGGLINGFCKCGELKSALLFFEKMKLAG 448

Query: 286 LPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVS 340
                V+   F+ +I    + + +    +L+  M + G +P   TY+  I  + S
Sbjct: 449 CAPNTVI---FNTLIDGLCKAERANDGLRLLCHMHAEGCKPDVITYNCLISGLCS 500


>gi|356497651|ref|XP_003517673.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Glycine max]
          Length = 827

 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 95/423 (22%), Positives = 171/423 (40%), Gaps = 55/423 (13%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           SF+DVI+   +      A Q++ +M+S G+ P  ++Y   I A      +   +++++ M
Sbjct: 393 SFNDVIYGFCKRGEVFEALQVLEEMKSSGILPDVYSYSILINAFCGKGDVMKCLDLMEEM 452

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQI--SRCT-NPKPFSAFLAACDTMDKP 411
           + + +KP   +  +L     K   L  A  +   I  S C  +   +   +         
Sbjct: 453 EHSQIKPSIVSYTSLIHGLCKKNMLQNAVDIFHSIGASSCKYDSTVYETLIDGFCMQGDM 512

Query: 412 ERAIKIFAKMR-QKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           + AIK+  +M   +L P        FS    +   Y+ G +F Q  + +  NA    M R
Sbjct: 513 DSAIKLLEEMICNELVPTA------FSCRSLIRGYYKLG-LFDQ--ALEVFNA----MLR 559

Query: 471 NNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHR 527
           + I    I+   +L      G  +E   L++ F +    L   +YN +++ L +     R
Sbjct: 560 DGIWPDTIACNYILDGSCRAGYFKEALTLLEDFQEHGFNLNPHSYNAIIYKLCKEGYPER 619

Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
           A+E+  +M    + P+   Y+ +I   +    FK A  L + MV+ G      TYT L+ 
Sbjct: 620 ALELLPRMLKRNVLPSVVNYSTLISGFAKQSNFKRAVNLFTRMVKVGITFNIATYTILMS 679

Query: 588 ILLD-------YGDFDE----------------------------ALNLLDLVSLEGIPH 612
           I          YG F E                            A  L + +S EG   
Sbjct: 680 IFSHSHKMHEAYGIFKEMKERGLCLDQISYTTLIVGFCNNREMKKAWALFEEMSREGCSP 739

Query: 613 DVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEAL 672
           +V+ Y  I+   C+  RID+  ++ ++M+++ V PD  T   +   Y   G+ + A +  
Sbjct: 740 NVITYTCIIDGFCKSNRIDLATWVFDKMNRDSVIPDVVTYTVLIDWYHKHGYFDQAHKLY 799

Query: 673 QVL 675
            V+
Sbjct: 800 DVM 802



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 74/318 (23%), Positives = 129/318 (40%), Gaps = 16/318 (5%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A +L+ +M    L P++ +    IR           +EV   M ++ + P       +  
Sbjct: 515 AIKLLEEMICNELVPTAFSCRSLIRGYYKLGLFDQALEVFNAMLRDGIWPDTIACNYILD 574

Query: 372 ECSKALELDLAEALLDQISRCT---NPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLRP 427
              +A     A  LL+         NP  ++A +        PERA+++  +M ++ + P
Sbjct: 575 GSCRAGYFKEALTLLEDFQEHGFNLNPHSYNAIIYKLCKEGYPERALELLPRMLKRNVLP 634

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQ-VDSAKRINAIEMDMARNNIQHSHISMKNLLKA 486
            +  Y  L S F   +      N+F++ V      N     +  +   HSH       K 
Sbjct: 635 SVVNYSTLISGFAKQSNFKRAVNLFTRMVKVGITFNIATYTILMSIFSHSH-------KM 687

Query: 487 LGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAAT 546
             A G+ +E+ +        L   +Y T++      +E  +A  +F++M   G  PN  T
Sbjct: 688 HEAYGIFKEMKE----RGLCLDQISYTTLIVGFCNNREMKKAWALFEEMSREGCSPNVIT 743

Query: 547 YNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVS 606
           Y  +ID          A+ +   M RD   P  +TYT LI     +G FD+A  L D++ 
Sbjct: 744 YTCIIDGFCKSNRIDLATWVFDKMNRDSVIPDVVTYTVLIDWYHKHGYFDQAHKLYDVMK 803

Query: 607 LEGIPHDVLLYNTILKKA 624
            +G+  D + +N +  KA
Sbjct: 804 DKGVLPDDITHNVLGLKA 821



 Score = 66.2 bits (160), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 55/229 (24%), Positives = 103/229 (44%), Gaps = 21/229 (9%)

Query: 429 IRTYELLFSLFGNVN-APYEEGNMFSQ-VDSAKRINAIEMDMARNNIQHSHISMKNLLKA 486
           +  + LL  + G  N A Y+   +FS  +DS +            +++ S +    L+  
Sbjct: 209 LEVWALLRDIVGFCNEAKYDTFELFSAFLDSPQ------------HVERSGVVFDVLISV 256

Query: 487 LGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPN 543
             +  M+   +  F ++K     P   T N +L  LVEA        +F+++K  G  PN
Sbjct: 257 FASNSMLENALDVFSNAKHVGLEPDIRTCNFLLKCLVEANRVEFVRRVFEELKDRGPSPN 316

Query: 544 AATYNIMIDC-CSIIRC---FKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEAL 599
             TY IM++  CS + C    + A+ ++  + R G  P  +TY+  I  L   G+ + AL
Sbjct: 317 IYTYTIMMNFYCSDVGCDAGMRQAAVILGKIYRSGEKPTVVTYSTYIHGLCKVGNVEAAL 376

Query: 600 NLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
            L+  +     P +   +N ++   C++G +     ++E+M  + + PD
Sbjct: 377 MLIRNLHYTNQPLNSHSFNDVIYGFCKRGEVFEALQVLEEMKSSGILPD 425



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 84/390 (21%), Positives = 155/390 (39%), Gaps = 35/390 (8%)

Query: 294 WSFSDVIHA-CGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
           +S+S +I+A CG+       + LM +M+   ++PS  +Y   I  +     L+N +++  
Sbjct: 427 YSYSILINAFCGKGDVMKCLD-LMEEMEHSQIKPSIVSYTSLIHGLCKKNMLQNAVDIFH 485

Query: 353 IMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPKPFS--AFLAACDTMD 409
            +  ++ K   +   TL        ++D A  LL++ I     P  FS  + +     + 
Sbjct: 486 SIGASSCKYDSTVYETLIDGFCMQGDMDSAIKLLEEMICNELVPTAFSCRSLIRGYYKLG 545

Query: 410 KPERAIKIF-AKMRQKLRPDIRTYELLFSLFGNVNAPY------------EEGN------ 450
             ++A+++F A +R  + PD  T    + L G+  A Y            E G       
Sbjct: 546 LFDQALEVFNAMLRDGIWPD--TIACNYILDGSCRAGYFKEALTLLEDFQEHGFNLNPHS 603

Query: 451 ----MFSQVDSAKRINAIEM--DMARNNIQHSHISMKNLLKALGAEGMIRELIQYF---C 501
               ++          A+E+   M + N+  S ++   L+     +   +  +  F    
Sbjct: 604 YNAIIYKLCKEGYPERALELLPRMLKRNVLPSVVNYSTLISGFAKQSNFKRAVNLFTRMV 663

Query: 502 DSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFK 561
                    TY  ++     + + H A  IFK+MK  G+  +  +Y  +I      R  K
Sbjct: 664 KVGITFNIATYTILMSIFSHSHKMHEAYGIFKEMKERGLCLDQISYTTLIVGFCNNREMK 723

Query: 562 SASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTIL 621
            A AL   M R+G  P  +TYT +I         D A  + D ++ + +  DV+ Y  ++
Sbjct: 724 KAWALFEEMSREGCSPNVITYTCIIDGFCKSNRIDLATWVFDKMNRDSVIPDVVTYTVLI 783

Query: 622 KKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
               + G  D    + + M    V PD  T
Sbjct: 784 DWYHKHGYFDQAHKLYDVMKDKGVLPDDIT 813



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 68/363 (18%), Positives = 139/363 (38%), Gaps = 53/363 (14%)

Query: 318 QMQSLGLQPSSHTYDGFIRAIVSDRGLRNGME----VLKIMQQNNLKPQDSTIATLSVEC 373
           +++  G  P+ +TY   +    SD G   GM     +L  + ++  KP   T +T     
Sbjct: 307 ELKDRGPSPNIYTYTIMMNFYCSDVGCDAGMRQAAVILGKIYRSGEKPTVVTYSTYIHGL 366

Query: 374 SKALELDLAEALLDQISRCTNP---KPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDI 429
            K   ++ A  L+  +     P     F+  +       +   A+++  +M+   + PD+
Sbjct: 367 CKVGNVEAALMLIRNLHYTNQPLNSHSFNDVIYGFCKRGEVFEALQVLEEMKSSGILPDV 426

Query: 430 RTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGA 489
            +Y +L      +NA   +G++   +D  +       +M  + I+ S +S          
Sbjct: 427 YSYSIL------INAFCGKGDVMKCLDLME-------EMEHSQIKPSIVS---------- 463

Query: 490 EGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNI 549
                                 Y +++H L +      A++IF  +       ++  Y  
Sbjct: 464 ----------------------YTSLIHGLCKKNMLQNAVDIFHSIGASSCKYDSTVYET 501

Query: 550 MIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEG 609
           +ID   +     SA  L+  M+ +   P   +  +LI+     G FD+AL + + +  +G
Sbjct: 502 LIDGFCMQGDMDSAIKLLEEMICNELVPTAFSCRSLIRGYYKLGLFDQALEVFNAMLRDG 561

Query: 610 IPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAM 669
           I  D +  N IL  +C  G       ++E   ++    +P + + +       G+   A+
Sbjct: 562 IWPDTIACNYILDGSCRAGYFKEALTLLEDFQEHGFNLNPHSYNAIIYKLCKEGYPERAL 621

Query: 670 EAL 672
           E L
Sbjct: 622 ELL 624



 Score = 52.8 bits (125), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 58/280 (20%), Positives = 114/280 (40%), Gaps = 23/280 (8%)

Query: 412 ERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
           E A+ +F+  +   L PDIRT   L       N          +V+  +R+     D   
Sbjct: 264 ENALDVFSNAKHVGLEPDIRTCNFLLKCLVEAN----------RVEFVRRVFEELKDRGP 313

Query: 471 N-NIQHSHISMKNLLKALGAEGMIRE----LIQYFCDSKTPLGTPTYNTVLHSLVEAQES 525
           + NI    I M      +G +  +R+    L + +   + P    TY+T +H L +    
Sbjct: 314 SPNIYTYTIMMNFYCSDVGCDAGMRQAAVILGKIYRSGEKPT-VVTYSTYIHGLCKVGNV 372

Query: 526 HRAMEIFKQMKTCGIPPNAATYN-IMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
             A+ + + +     P N+ ++N ++   C     F++   L  M    G  P   +Y+ 
Sbjct: 373 EAALMLIRNLHYTNQPLNSHSFNDVIYGFCKRGEVFEALQVLEEMK-SSGILPDVYSYSI 431

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
           LI      GD  + L+L++ +    I   ++ Y +++   C+K  +     I   +  + 
Sbjct: 432 LINAFCGKGDVMKCLDLMEEMEHSQIKPSIVSYTSLIHGLCKKNMLQNAVDIFHSIGASS 491

Query: 645 VQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEV 684
            + D +    +  G+   G  +SA++ L+     M+C E+
Sbjct: 492 CKYDSTVYETLIDGFCMQGDMDSAIKLLE----EMICNEL 527


>gi|449449675|ref|XP_004142590.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Cucumis sativus]
          Length = 581

 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 114/492 (23%), Positives = 195/492 (39%), Gaps = 67/492 (13%)

Query: 194 VTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHM 253
           V  T+L+K     +NL     + E    +    ++S    +  F++   + SA +    M
Sbjct: 98  VLCTKLIKGFFNSRNLKKAMRVMEILETYGDPDVYSYNAMISGFSKANQIDSANQVFDRM 157

Query: 254 VALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAE 313
                            R R    D+ +  N +            +   C R +   LA 
Sbjct: 158 -----------------RSRGFSPDV-VTYNIM------------IGSLCSRGKLE-LAF 186

Query: 314 QLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTI-ATLSVE 372
           ++M ++   G +PS  TY   I A + +  +   +E+   +    L+P   T  A +   
Sbjct: 187 EVMDELLKDGCKPSVITYTILIEATILEGRINEALELFDELVSRGLRPDLYTYNAIIRGI 246

Query: 373 CSKALELDLAEALLDQIS-RCTNPKPFS------AFLAACDTMDKPERAIKIFAKMRQKL 425
           C + +E D A   +  +S R  NP   S      +FL      D  ER +K    +    
Sbjct: 247 CKEGME-DRALDFVRHLSARGCNPDVVSYNILLRSFLNKSRWEDG-ERLMK--DMVLSGC 302

Query: 426 RPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLK 485
            P++ T+ +L S F        EG +       + +N +E+ M    +     S   L+ 
Sbjct: 303 EPNVVTHSILISSF------CREGRV------REAVNVLEV-MKEKGLTPDSYSYDPLIS 349

Query: 486 ALGAEGMIRELIQYF----CDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIP 541
           A   EG +   I+Y      D   P     YNT+L +L +   +  A+++F+++   G P
Sbjct: 350 AFCKEGRLDLAIEYLEKMVSDGCLP-DIVNYNTILATLCKFGCADLALDVFEKLDEVGCP 408

Query: 542 PNAATYNIMIDCCSIIRCFKSASAL--VSMMVRDGFYPQTMTYTALIKILLDYGDFDEAL 599
           P    YN M    ++  C     AL  +S M+R G  P  +TY +LI  L   G  DEA+
Sbjct: 409 PTVRAYNTMFS--ALWSCGNKIKALEMISEMIRKGIDPDEITYNSLISCLCRDGLVDEAI 466

Query: 600 NLLDLVSLEGIPHDVLLYNTILKKACEKGRI-DVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
            LL  +        V+ +N +L   C+  R+ + IE +I  M +    P+ ++   +  G
Sbjct: 467 GLLVDMEATRFQPTVISFNIVLLGMCKAHRVFEGIELLI-TMVEKGCLPNETSYVLLIEG 525

Query: 659 YVNCGFHNSAME 670
               G+   AME
Sbjct: 526 IAYAGWRAEAME 537



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 81/367 (22%), Positives = 154/367 (41%), Gaps = 35/367 (9%)

Query: 321 SLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELD 380
           S G +P        I+   + R L+  M V++I++     P   +   +    SKA ++D
Sbjct: 90  SKGFKPDVVLCTKLIKGFFNSRNLKKAMRVMEILETYG-DPDVYSYNAMISGFSKANQID 148

Query: 381 LAEALLDQI-SRCTNPK--PFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLF 436
            A  + D++ SR  +P    ++  + +  +  K E A ++  ++ +   +P + TY +L 
Sbjct: 149 SANQVFDRMRSRGFSPDVVTYNIMIGSLCSRGKLELAFEVMDELLKDGCKPSVITYTIL- 207

Query: 437 SLFGNVNAPYEEGNMFSQVDSAKRIN-AIEM--DMARNNIQHSHISMKNLLKALGAEGM- 492
                + A   EG          RIN A+E+  ++    ++    +   +++ +  EGM 
Sbjct: 208 -----IEATILEG----------RINEALELFDELVSRGLRPDLYTYNAIIRGICKEGME 252

Query: 493 ------IRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAAT 546
                 +R L    C+        +YN +L S +          + K M   G  PN  T
Sbjct: 253 DRALDFVRHLSARGCNPDVV----SYNILLRSFLNKSRWEDGERLMKDMVLSGCEPNVVT 308

Query: 547 YNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVS 606
           ++I+I         + A  ++ +M   G  P + +Y  LI      G  D A+  L+ + 
Sbjct: 309 HSILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRLDLAIEYLEKMV 368

Query: 607 LEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHN 666
            +G   D++ YNTIL   C+ G  D+   + E++ +    P     + +FS   +CG   
Sbjct: 369 SDGCLPDIVNYNTILATLCKFGCADLALDVFEKLDEVGCPPTVRAYNTMFSALWSCGNKI 428

Query: 667 SAMEALQ 673
            A+E + 
Sbjct: 429 KALEMIS 435



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/284 (21%), Positives = 133/284 (46%), Gaps = 21/284 (7%)

Query: 398 FSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVD 456
           ++A ++     ++ + A ++F +MR +   PD+ TY ++             G++ S+  
Sbjct: 134 YNAMISGFSKANQIDSANQVFDRMRSRGFSPDVVTYNIMI------------GSLCSR-- 179

Query: 457 SAKRINAIEM--DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---T 511
             K   A E+  ++ ++  + S I+   L++A   EG I E ++ F +  +    P   T
Sbjct: 180 -GKLELAFEVMDELLKDGCKPSVITYTILIEATILEGRINEALELFDELVSRGLRPDLYT 238

Query: 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMV 571
           YN ++  + +     RA++  + +   G  P+  +YNI++        ++    L+  MV
Sbjct: 239 YNAIIRGICKEGMEDRALDFVRHLSARGCNPDVVSYNILLRSFLNKSRWEDGERLMKDMV 298

Query: 572 RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631
             G  P  +T++ LI      G   EA+N+L+++  +G+  D   Y+ ++   C++GR+D
Sbjct: 299 LSGCEPNVVTHSILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRLD 358

Query: 632 VIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
           +    +E+M  +   PD    + + +     G  + A++  + L
Sbjct: 359 LAIEYLEKMVSDGCLPDIVNYNTILATLCKFGCADLALDVFEKL 402



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 88/407 (21%), Positives = 170/407 (41%), Gaps = 34/407 (8%)

Query: 285 ALPVMKVLR-------WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRA 337
           A+ VM++L        +S++ +I    +      A Q+  +M+S G  P   TY+  I +
Sbjct: 116 AMRVMEILETYGDPDVYSYNAMISGFSKANQIDSANQVFDRMRSRGFSPDVVTYNIMIGS 175

Query: 338 IVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEAL--LDQ-ISRCTN 394
           + S   L    EV+  + ++  KP   T  T+ +E +  LE  + EAL   D+ +SR   
Sbjct: 176 LCSRGKLELAFEVMDELLKDGCKPSVITY-TILIEAT-ILEGRINEALELFDELVSRGLR 233

Query: 395 PK--PFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNM 451
           P    ++A +         +RA+     +  +   PD+ +Y +L   F N  + +E+G  
Sbjct: 234 PDLYTYNAIIRGICKEGMEDRALDFVRHLSARGCNPDVVSYNILLRSFLN-KSRWEDGER 292

Query: 452 FSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP- 510
             +            DM  +  + + ++   L+ +   EG +RE +      K    TP 
Sbjct: 293 LMK------------DMVLSGCEPNVVTHSILISSFCREGRVREAVNVLEVMKEKGLTPD 340

Query: 511 --TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVS 568
             +Y+ ++ +  +      A+E  ++M + G  P+   YN ++       C   A  +  
Sbjct: 341 SYSYDPLISAFCKEGRLDLAIEYLEKMVSDGCLPDIVNYNTILATLCKFGCADLALDVFE 400

Query: 569 MMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
            +   G  P    Y  +   L   G+  +AL ++  +  +GI  D + YN+++   C  G
Sbjct: 401 KLDEVGCPPTVRAYNTMFSALWSCGNKIKALEMISEMIRKGIDPDEITYNSLISCLCRDG 460

Query: 629 RIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
            +D    ++  M   + QP   + + V  G   C  H    E +++L
Sbjct: 461 LVDEAIGLLVDMEATRFQPTVISFNIVLLGM--CKAHR-VFEGIELL 504



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 78/170 (45%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TYN ++ SL    +   A E+  ++   G  P+  TY I+I+   +      A  L   +
Sbjct: 168 TYNIMIGSLCSRGKLELAFEVMDELLKDGCKPSVITYTILIEATILEGRINEALELFDEL 227

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           V  G  P   TY A+I+ +   G  D AL+ +  +S  G   DV+ YN +L+    K R 
Sbjct: 228 VSRGLRPDLYTYNAIIRGICKEGMEDRALDFVRHLSARGCNPDVVSYNILLRSFLNKSRW 287

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRML 680
           +  E +++ M  +  +P+  T   + S +   G    A+  L+V+  + L
Sbjct: 288 EDGERLMKDMVLSGCEPNVVTHSILISSFCREGRVREAVNVLEVMKEKGL 337



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 77/164 (46%), Gaps = 1/164 (0%)

Query: 515 VLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDG 574
           ++     ++   +AM + + ++T G  P+  +YN MI   S      SA+ +   M   G
Sbjct: 103 LIKGFFNSRNLKKAMRVMEILETYG-DPDVYSYNAMISGFSKANQIDSANQVFDRMRSRG 161

Query: 575 FYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIE 634
           F P  +TY  +I  L   G  + A  ++D +  +G    V+ Y  +++    +GRI+   
Sbjct: 162 FSPDVVTYNIMIGSLCSRGKLELAFEVMDELLKDGCKPSVITYTILIEATILEGRINEAL 221

Query: 635 FIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678
            + +++    ++PD  T + +  G    G  + A++ ++ LS R
Sbjct: 222 ELFDELVSRGLRPDLYTYNAIIRGICKEGMEDRALDFVRHLSAR 265


>gi|414874052|tpg|DAA52609.1| TPA: hypothetical protein ZEAMMB73_367214 [Zea mays]
          Length = 716

 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 86/408 (21%), Positives = 163/408 (39%), Gaps = 57/408 (13%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           ++S V+HA  + +  G AE  + QM + G+ P + TY+  I    S    +  + V K M
Sbjct: 260 TYSSVVHALCKARAMGKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEM 319

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQIS-RCTNPKPFSAFL----------- 402
           +++++ P   T+  L     K  ++  A  + D ++ +  NP  FS  +           
Sbjct: 320 RRHSILPDVVTLNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYKIMLNGYATKGCL 379

Query: 403 -----------------------------AACDTMDKPERAIKIFAKMR-QKLRPDIRTY 432
                                        A C  +DK   A+ IF +MR   ++PD+ TY
Sbjct: 380 VDMTDLFDLMLGDGIAPDIYTFSVLIKAYANCGMLDK---AMIIFNEMRDHGVKPDVVTY 436

Query: 433 ELLFSLFGNVNAPYEEGNMFSQ-VDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEG 491
             + +    +    +    F+Q +D     +      A + +     +  +LLKA     
Sbjct: 437 TTVIAALCRIGKMDDAMEKFNQMIDQGVAPD----KYAYHCLIQGFCTHGSLLKA----- 487

Query: 492 MIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMI 551
             +ELI    ++   L    +++++++L +      A  IF      G  P+A  Y++++
Sbjct: 488 --KELILEIMNNGMRLDIVFFSSIINNLCKLGRIMDAQNIFDLTVNVGQHPDAVVYSMLM 545

Query: 552 DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIP 611
           D   ++   + A  +   MV  G  P  + Y  L+      G  DE L+L   +  +GI 
Sbjct: 546 DGYCLVGKMEKALRVFDAMVSAGIEPNVVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIK 605

Query: 612 HDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659
              +LYN I+      GR    +    +M ++ +  +  T + V  G+
Sbjct: 606 PSTILYNIIIDGLFVAGRTVPAKVKFHEMTESGIAINKCTYNIVLRGF 653



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/267 (22%), Positives = 115/267 (43%), Gaps = 20/267 (7%)

Query: 413 RAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471
           +A  +F +M Q+ + PD+ TY  +              +   +  +  +  A    M   
Sbjct: 241 KACDLFKEMVQRGIPPDLVTYSSVV-------------HALCKARAMGKAEAFLRQMVNK 287

Query: 472 NIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRA 528
            +   + +  NL+    + G  +E ++ F + +     P   T N ++ SL +  +   A
Sbjct: 288 GVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLNMLMGSLCKYGKIKEA 347

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
            ++F  M   G  P+  +Y IM++  +   C    + L  +M+ DG  P   T++ LIK 
Sbjct: 348 RDVFDTMAMKGQNPDVFSYKIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFSVLIKA 407

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
             + G  D+A+ + + +   G+  DV+ Y T++   C  G++D       QM    V PD
Sbjct: 408 YANCGMLDKAMIIFNEMRDHGVKPDVVTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPD 467

Query: 649 PSTCHFVFSGYVNCGFHNSAMEALQVL 675
               H +  G+     H S ++A +++
Sbjct: 468 KYAYHCLIQGFCT---HGSLLKAKELI 491



 Score = 72.8 bits (177), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 79/392 (20%), Positives = 150/392 (38%), Gaps = 24/392 (6%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLG--LQPSSHTYDGFIRAIVSDRGLRNGMEVL 351
           +S+S ++ +      SG A+ L+  M   G    P    Y   I     +  +    ++ 
Sbjct: 187 FSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYTTVIDCFFKEGDVNKACDLF 246

Query: 352 KIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPK--PFSAFLAACDTM 408
           K M Q  + P   T +++     KA  +  AEA L Q +++   P    ++  +    + 
Sbjct: 247 KEMVQRGIPPDLVTYSSVVHALCKARAMGKAEAFLRQMVNKGVLPDNWTYNNLIYGYSST 306

Query: 409 DKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMD 467
            + + A+++F +MR+  + PD+ T  +L           E  ++F               
Sbjct: 307 GQWKEAVRVFKEMRRHSILPDVVTLNMLMGSLCKYGKIKEARDVFDT------------- 353

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRELIQYF----CDSKTPLGTPTYNTVLHSLVEAQ 523
           MA         S K +L     +G + ++   F     D   P    T++ ++ +     
Sbjct: 354 MAMKGQNPDVFSYKIMLNGYATKGCLVDMTDLFDLMLGDGIAP-DIYTFSVLIKAYANCG 412

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
              +AM IF +M+  G+ P+  TY  +I     I     A    + M+  G  P    Y 
Sbjct: 413 MLDKAMIIFNEMRDHGVKPDVVTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYH 472

Query: 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
            LI+    +G   +A  L+  +   G+  D++ +++I+   C+ GRI   + I +     
Sbjct: 473 CLIQGFCTHGSLLKAKELILEIMNNGMRLDIVFFSSIINNLCKLGRIMDAQNIFDLTVNV 532

Query: 644 KVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
              PD      +  GY   G    A+     +
Sbjct: 533 GQHPDAVVYSMLMDGYCLVGKMEKALRVFDAM 564



 Score = 58.9 bits (141), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 82/180 (45%), Gaps = 7/180 (3%)

Query: 513 NTVLHSLVEAQESHRAMEIF-KQMKTCGIPPNAATYNIMIDCCSIIRCFKSASA--LVSM 569
           N +L    EA+ +  A++I   +    G  P+  +Y+I++   S+    KS  A  L+ M
Sbjct: 154 NHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLK--SLCDQGKSGQADDLLRM 211

Query: 570 MVRDGFY--PQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEK 627
           M   G    P  + YT +I      GD ++A +L   +   GIP D++ Y++++   C+ 
Sbjct: 212 MAEGGAVCSPDVVAYTTVIDCFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKA 271

Query: 628 GRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTL 687
             +   E  + QM    V PD  T + +  GY + G    A+   + +    +  +V TL
Sbjct: 272 RAMGKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTL 331



 Score = 49.7 bits (117), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 68/321 (21%), Positives = 120/321 (37%), Gaps = 39/321 (12%)

Query: 382 AEALLDQISRCTNP---KPFSAFLAA---------CDTMDKPERAIKIF------AKMRQ 423
           A  LLD++ R   P   +  + FLAA         C +   P  A+ +F      A+  +
Sbjct: 52  AHDLLDELQRRGTPVLGRDLNGFLAALARAPSSAACGS--GPALAVALFNRAASRAQGPR 109

Query: 424 KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNL 483
            L P   TY +L       + P      F Q             + R  ++   I   +L
Sbjct: 110 VLSPTSHTYAILMDCCTRAHRPELALAFFGQ-------------LLRTGLRVDIIIANHL 156

Query: 484 LKALGAEGMIRELIQYFCDSKTPLG-TP---TYNTVLHSLVEAQESHRAMEIFKQMKTCG 539
           LK         E +         LG  P   +Y+ +L SL +  +S +A ++ + M   G
Sbjct: 157 LKGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGG 216

Query: 540 --IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDE 597
               P+   Y  +IDC         A  L   MV+ G  P  +TY++++  L       +
Sbjct: 217 AVCSPDVVAYTTVIDCFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMGK 276

Query: 598 ALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFS 657
           A   L  +  +G+  D   YN ++      G+      + ++M ++ + PD  T + +  
Sbjct: 277 AEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLNMLMG 336

Query: 658 GYVNCGFHNSAMEALQVLSMR 678
                G    A +    ++M+
Sbjct: 337 SLCKYGKIKEARDVFDTMAMK 357



 Score = 42.0 bits (97), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 98/517 (18%), Positives = 201/517 (38%), Gaps = 87/517 (16%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y  ++    K G + +A +L   + +R GI P L  Y+S + A  K  +M  A   L  M
Sbjct: 226 YTTVIDCFFKEGDVNKACDLFKEMVQR-GIPPDLVTYSSVVHALCKARAMGKAEAFLRQM 284

Query: 185 DSRMVGKNEVTYTELL----KLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRL 240
            ++ V  +  TY  L+        W++ +    E+    I    +++  L   +  + ++
Sbjct: 285 VNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLNMLMGSLCKYGKI 344

Query: 241 RDLKSAYETLQHMVALAMMG--------KLYINR-TSEGRL--RSSRLDIPIPLNALPVM 289
           ++ +  ++T+      AM G        K+ +N   ++G L   +   D+ +     P +
Sbjct: 345 KEARDVFDTM------AMKGQNPDVFSYKIMLNGYATKGCLVDMTDLFDLMLGDGIAPDI 398

Query: 290 KVLRWSFSDVIHACGRTQNSGLAEQLML---QMQSLGLQPSSHTYDGFIRAIVSDRGLRN 346
               ++FS +I A     N G+ ++ M+   +M+  G++P   TY   I A+     + +
Sbjct: 399 ----YTFSVLIKA---YANCGMLDKAMIIFNEMRDHGVKPDVVTYTTVIAALCRIGKMDD 451

Query: 347 GMEVLKIMQQNNLKPQDSTIATL--------SVECSKALELDL----------------- 381
            ME    M    + P       L        S+  +K L L++                 
Sbjct: 452 AMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELILEIMNNGMRLDIVFFSSIIN 511

Query: 382 ----------AEALLD---QISRCTNPKPFSAFLAACDTMDKPERAIKIF-AKMRQKLRP 427
                     A+ + D    + +  +   +S  +     + K E+A+++F A +   + P
Sbjct: 512 NLCKLGRIMDAQNIFDLTVNVGQHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEP 571

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL 487
           ++  Y  L + +  +    E  ++F +             M +  I+ S I    ++  L
Sbjct: 572 NVVVYGTLVNGYCKIGRIDEGLSLFRE-------------MLQKGIKPSTILYNIIIDGL 618

Query: 488 GAEG-MIRELIQY--FCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNA 544
              G  +   +++    +S   +   TYN VL    + +    A+ +FK+++   +  + 
Sbjct: 619 FVAGRTVPAKVKFHEMTESGIAINKCTYNIVLRGFFKNRCFDEAIFLFKELRAMNVKIDI 678

Query: 545 ATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMT 581
            T N MI      R  + A  L + + R G  P  +T
Sbjct: 679 ITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCVVT 715


>gi|357494039|ref|XP_003617308.1| Auxin response factor [Medicago truncatula]
 gi|355518643|gb|AET00267.1| Auxin response factor [Medicago truncatula]
          Length = 948

 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 86/387 (22%), Positives = 153/387 (39%), Gaps = 24/387 (6%)

Query: 304 GRTQNSGLAEQLMLQMQSL-GLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQ 362
           G+    G A +L+L M  +   +P+  +Y+  +  +V+    +    V   M    + P 
Sbjct: 140 GKAGLPGQATRLLLDMWGVYCFEPTFKSYNVVLEILVAGNCPKVAPNVFYDMLSRGISPT 199

Query: 363 DSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKPERAIKIFA 419
             T   +        E+D A +LL  +++     N   +   + A    ++   A+K+  
Sbjct: 200 VYTFGVVMKAFCMVNEVDSACSLLRDMTKHGCVPNSIIYQMLIHALSENNRVNEAMKLLE 259

Query: 420 KM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHI 478
           +M      PD++T+  +          +E   +  +             M   +     +
Sbjct: 260 EMFLMGCEPDVQTFNDVIHGLCKAGRIHEAAKLHDR-------------MLLRDFTADAL 306

Query: 479 SMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEI-FKQMKT 537
               L+  L   G + E          P  T  YNT+++  V +     A ++ +K M  
Sbjct: 307 IQGYLMHGLCRMGKVDEARAMLSKIPNP-NTVLYNTLINGYVVSGRFEEAKDLLYKNMVI 365

Query: 538 CGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDE 597
            G  P+A T+NIMID         SA   +  MV+ GF P  +TYT LI      G F+E
Sbjct: 366 AGFEPDAFTFNIMIDGLCKKGYLVSALEFLDEMVKKGFEPNVITYTILIDGFCKQGHFEE 425

Query: 598 ALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFS 657
           A  +++ +S +G+  + + YN ++   C+ G+I     +  +M     +PD  T + +  
Sbjct: 426 ASKVVNSMSAKGLSLNTVGYNCLIGALCKDGKIQDALQMYGEMSSKGCKPDIYTFNSLIY 485

Query: 658 GYVNCGFHNSAMEALQVLSMRMLCEEV 684
           G       N  ME    L   ML E V
Sbjct: 486 GLC----KNDKMEEALGLYRDMLLEGV 508



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 76/393 (19%), Positives = 160/393 (40%), Gaps = 19/393 (4%)

Query: 299 VIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNN 358
           +IHA         A +L+ +M  +G +P   T++  I  +     +    ++   M   +
Sbjct: 241 LIHALSENNRVNEAMKLLEEMFLMGCEPDVQTFNDVIHGLCKAGRIHEAAKLHDRMLLRD 300

Query: 359 LKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIF 418
                     L     +  ++D A A+L +I    N   ++  +       + E A  + 
Sbjct: 301 FTADALIQGYLMHGLCRMGKVDEARAMLSKIPN-PNTVLYNTLINGYVVSGRFEEAKDLL 359

Query: 419 AK--MRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHS 476
            K  +     PD  T+ ++      ++   ++G + S ++          +M +   + +
Sbjct: 360 YKNMVIAGFEPDAFTFNIM------IDGLCKKGYLVSALEFLD-------EMVKKGFEPN 406

Query: 477 HISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFK 533
            I+   L+     +G   E   ++         L T  YN ++ +L +  +   A++++ 
Sbjct: 407 VITYTILIDGFCKQGHFEEASKVVNSMSAKGLSLNTVGYNCLIGALCKDGKIQDALQMYG 466

Query: 534 QMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYG 593
           +M + G  P+  T+N +I         + A  L   M+ +G    T+TY  LI   L   
Sbjct: 467 EMSSKGCKPDIYTFNSLIYGLCKNDKMEEALGLYRDMLLEGVIANTVTYNTLIHAFLRLE 526

Query: 594 DFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCH 653
              +A  L+  +   G P D + YN ++K  C+ G  +    +IEQM   ++ P  ++C+
Sbjct: 527 LIQQADKLVGEMRFRGCPLDNITYNGLIKALCKTGATEKCLGLIEQMFGEEIFPSINSCN 586

Query: 654 FVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
            + + +   G  N A++ L+ +  R L  ++ T
Sbjct: 587 ILINSFCRTGKVNDALQFLRDMIQRGLTPDIVT 619



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 69/354 (19%), Positives = 136/354 (38%), Gaps = 49/354 (13%)

Query: 323 GLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLA 382
           G +P + T++  I  +     L + +E L  M +   +P   T   L     K    + A
Sbjct: 367 GFEPDAFTFNIMIDGLCKKGYLVSALEFLDEMVKKGFEPNVITYTILIDGFCKQGHFEEA 426

Query: 383 EALLDQISR---CTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSL 438
             +++ +S      N   ++  + A     K + A++++ +M  K  +PDI T+      
Sbjct: 427 SKVVNSMSAKGLSLNTVGYNCLIGALCKDGKIQDALQMYGEMSSKGCKPDIYTF------ 480

Query: 439 FGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQ 498
                                  N++   + +N+     +    L + +  EG+I     
Sbjct: 481 -----------------------NSLIYGLCKNDKMEEALG---LYRDMLLEGVIAN--- 511

Query: 499 YFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIR 558
                     T TYNT++H+ +  +   +A ++  +M+  G P +  TYN +I       
Sbjct: 512 ----------TVTYNTLIHAFLRLELIQQADKLVGEMRFRGCPLDNITYNGLIKALCKTG 561

Query: 559 CFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYN 618
             +    L+  M  +  +P   +   LI      G  ++AL  L  +   G+  D++ YN
Sbjct: 562 ATEKCLGLIEQMFGEEIFPSINSCNILINSFCRTGKVNDALQFLRDMIQRGLTPDIVTYN 621

Query: 619 TILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEAL 672
           +++   C+ GR      +   +    + PD  T + + S Y   G  N A + L
Sbjct: 622 SLINGLCKMGRFQEALNLFNGLQAKGIHPDAVTYNTLISRYCYEGLFNDACQLL 675



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/262 (22%), Positives = 116/262 (44%), Gaps = 18/262 (6%)

Query: 421 MRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISM 480
           +++   P++ TY +L   F      +EE        ++K +N+    M+   +  + +  
Sbjct: 399 VKKGFEPNVITYTILIDGFCK-QGHFEE--------ASKVVNS----MSAKGLSLNTVGY 445

Query: 481 KNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKT 537
             L+ AL  +G I++ +Q + +  +    P   T+N++++ L +  +   A+ +++ M  
Sbjct: 446 NCLIGALCKDGKIQDALQMYGEMSSKGCKPDIYTFNSLIYGLCKNDKMEEALGLYRDMLL 505

Query: 538 CGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDE 597
            G+  N  TYN +I     +   + A  LV  M   G     +TY  LIK L   G  ++
Sbjct: 506 EGVIANTVTYNTLIHAFLRLELIQQADKLVGEMRFRGCPLDNITYNGLIKALCKTGATEK 565

Query: 598 ALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI-DVIEFIIEQMHQNKVQPDPSTCHFVF 656
            L L++ +  E I   +   N ++   C  G++ D ++F +  M Q  + PD  T + + 
Sbjct: 566 CLGLIEQMFGEEIFPSINSCNILINSFCRTGKVNDALQF-LRDMIQRGLTPDIVTYNSLI 624

Query: 657 SGYVNCGFHNSAMEALQVLSMR 678
           +G    G    A+     L  +
Sbjct: 625 NGLCKMGRFQEALNLFNGLQAK 646



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 67/298 (22%), Positives = 122/298 (40%), Gaps = 20/298 (6%)

Query: 312 AEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371
           A +++  M + GL  ++  Y+  I A+  D  +++ +++   M     KP   T  +L  
Sbjct: 426 ASKVVNSMSAKGLSLNTVGYNCLIGALCKDGKIQDALQMYGEMSSKGCKPDIYTFNSLIY 485

Query: 372 ECSKALELDLAEALLDQI---SRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRP- 427
              K  +++ A  L   +       N   ++  + A   ++  ++A K+  +MR +  P 
Sbjct: 486 GLCKNDKMEEALGLYRDMLLEGVIANTVTYNTLIHAFLRLELIQQADKLVGEMRFRGCPL 545

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL 487
           D  TY  L        A            + K +  IE  M    I  S  S   L+ + 
Sbjct: 546 DNITYNGLIKALCKTGA------------TEKCLGLIE-QMFGEEIFPSINSCNILINSF 592

Query: 488 GAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNA 544
              G + + +Q+  D      TP   TYN++++ L +      A+ +F  ++  GI P+A
Sbjct: 593 CRTGKVNDALQFLRDMIQRGLTPDIVTYNSLINGLCKMGRFQEALNLFNGLQAKGIHPDA 652

Query: 545 ATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL 602
            TYN +I        F  A  L+   V +GF P  +T++ LI   +      E   +L
Sbjct: 653 VTYNTLISRYCYEGLFNDACQLLFKGVSNGFIPNEITWSILINYFVKNNSDSEQFTIL 710



 Score = 45.8 bits (107), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 68/338 (20%), Positives = 135/338 (39%), Gaps = 9/338 (2%)

Query: 111 RMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAK 170
           R M  K    N   Y  ++      G  EEA +L+Y      G  P    +N  +    K
Sbjct: 325 RAMLSKIPNPNTVLYNTLINGYVVSGRFEEAKDLLYKNMVIAGFEPDAFTFNIMIDGLCK 384

Query: 171 LHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDY-IKHYSLSIFS 229
              +V A   LD M  +    N +TYT L+     Q +     ++      K  SL+   
Sbjct: 385 KGYLVSALEFLDEMVKKGFEPNVITYTILIDGFCKQGHFEEASKVVNSMSAKGLSLNTVG 444

Query: 230 LRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLY-INRTSEGRLRSSRLDIPIPLNALPV 288
               + +  +   ++ A +    M +      +Y  N    G  ++ +++  + L    +
Sbjct: 445 YNCLIGALCKDGKIQDALQMYGEMSSKGCKPDIYTFNSLIYGLCKNDKMEEALGLYRDML 504

Query: 289 MKVL---RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLR 345
           ++ +     +++ +IHA  R +    A++L+ +M+  G    + TY+G I+A+       
Sbjct: 505 LEGVIANTVTYNTLIHAFLRLELIQQADKLVGEMRFRGCPLDNITYNGLIKALCKTGATE 564

Query: 346 NGMEVLKIMQQNNLKPQ-DSTIATLSVECSKALELDLAEALLDQISRCTNPK--PFSAFL 402
             + +++ M    + P  +S    ++  C      D  + L D I R   P    +++ +
Sbjct: 565 KCLGLIEQMFGEEIFPSINSCNILINSFCRTGKVNDALQFLRDMIQRGLTPDIVTYNSLI 624

Query: 403 AACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLF 439
                M + + A+ +F  ++ K + PD  TY  L S +
Sbjct: 625 NGLCKMGRFQEALNLFNGLQAKGIHPDAVTYNTLISRY 662


>gi|168052517|ref|XP_001778696.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162669911|gb|EDQ56489.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 799

 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 68/307 (22%), Positives = 133/307 (43%), Gaps = 19/307 (6%)

Query: 388 QISRCT-NPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPY 446
           ++ RC  + + ++A +       +   A++IF  M Q  +P   +     +L   +NA  
Sbjct: 114 KVWRCKPDVETYNALMNVHGRAGQWRWALQIFDDMLQAPKPIAPSRSSYNNL---INACG 170

Query: 447 EEGNMFSQVDSAKRI--NAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYF---C 501
             G  F  ++  KR+  N +  D+   NI         +L A  + G  R  + Y+    
Sbjct: 171 SSGQWFKALEICKRMTDNGVGPDLMTYNI---------ILSAFKSGGQPRHAVAYYDHLI 221

Query: 502 DSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQM-KTCGIPPNAATYNIMIDCCSIIRCF 560
             K PL   ++N +L+ L +      A+ +FK+M K  G  P+  T+N ++   ++    
Sbjct: 222 SKKVPLDRYSHNIILNCLTKLGRFEDAINLFKEMRKMNGCEPDVVTFNALLHVYALCGQI 281

Query: 561 KSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTI 620
             A     MM+ +G  P  +T+  L+      G + EAL ++ L+       DV+ Y+++
Sbjct: 282 TKAQETFDMMIGEGMAPTIVTFNTLLGAYASQGMYTEALQVVGLLVKAKFEPDVVSYSSL 341

Query: 621 LKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRML 680
           L    + G  +  + + + M Q   +P+  T + +   Y + G +  A E L  ++   +
Sbjct: 342 LNAFGKAGYPEKAQEVFDLMKQRSRKPNLVTFNGLMDAYASAGKYERARELLHDMAEARI 401

Query: 681 CEEVSTL 687
              V T+
Sbjct: 402 EPNVVTI 408



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 67/329 (20%), Positives = 137/329 (41%), Gaps = 33/329 (10%)

Query: 342 RGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKP---- 397
           RGL   M+V +       KP   T   L     +A +   A  + D + +   PKP    
Sbjct: 107 RGLFYEMKVWRC------KPDVETYNALMNVHGRAGQWRWALQIFDDMLQA--PKPIAPS 158

Query: 398 ---FSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFS 453
              ++  + AC +  +  +A++I  +M    + PD+ TY ++ S F +   P      + 
Sbjct: 159 RSSYNNLINACGSSGQWFKALEICKRMTDNGVGPDLMTYNIILSAFKSGGQPRHAVAYYD 218

Query: 454 QVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLG----T 509
            + S K    + +D   +NI         +L  L   G   + I  F + +   G     
Sbjct: 219 HLISKK----VPLDRYSHNI---------ILNCLTKLGRFEDAINLFKEMRKMNGCEPDV 265

Query: 510 PTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSM 569
            T+N +LH      +  +A E F  M   G+ P   T+N ++   +    +  A  +V +
Sbjct: 266 VTFNALLHVYALCGQITKAQETFDMMIGEGMAPTIVTFNTLLGAYASQGMYTEALQVVGL 325

Query: 570 MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629
           +V+  F P  ++Y++L+      G  ++A  + DL+       +++ +N ++      G+
Sbjct: 326 LVKAKFEPDVVSYSSLLNAFGKAGYPEKAQEVFDLMKQRSRKPNLVTFNGLMDAYASAGK 385

Query: 630 IDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
            +    ++  M + +++P+  T   +F+ 
Sbjct: 386 YERARELLHDMAEARIEPNVVTICSLFAA 414



 Score = 62.4 bits (150), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 67/333 (20%), Positives = 133/333 (39%), Gaps = 23/333 (6%)

Query: 323 GLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL-SVECSKALELDL 381
           G +P   T++  +        +    E   +M    + P   T  TL     S+ +  + 
Sbjct: 260 GCEPDVVTFNALLHVYALCGQITKAQETFDMMIGEGMAPTIVTFNTLLGAYASQGMYTEA 319

Query: 382 AE--ALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLR-PDIRTYELLFSL 438
            +   LL +     +   +S+ L A      PE+A ++F  M+Q+ R P++ T+  L   
Sbjct: 320 LQVVGLLVKAKFEPDVVSYSSLLNAFGKAGYPEKAQEVFDLMKQRSRKPNLVTFNGLMDA 379

Query: 439 FGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQ 498
           + +    YE            R   +  DMA   I+ + +++ +L  A        ++  
Sbjct: 380 YASA-GKYE------------RARELLHDMAEARIEPNVVTICSLFAACARARCPEKVRD 426

Query: 499 YFCDSKT---PLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCS 555
            F ++K     L  P +N  + + +EA +   A  + + M+   + PN  T+ ++I+   
Sbjct: 427 VFHEAKVRQIALNVPAFNAAITAYIEAGQFDEAKALLEVMEEQNLRPNGVTFLLLINAAG 486

Query: 556 IIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVL 615
            +  ++ A  L   MV  G        +ALI     +G ++EA  + D +   G   +V+
Sbjct: 487 SLGDYREARTLYDKMVDLGIPLTVEPCSALINAFAKHGMYNEARTIFDDMRKAGCKANVV 546

Query: 616 LYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
            Y +++         D  +   E+M    + PD
Sbjct: 547 TYTSLM---IAYRMYDDAQLACEEMVAAGITPD 576



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 80/395 (20%), Positives = 153/395 (38%), Gaps = 43/395 (10%)

Query: 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK 352
           R S++++I+ACG +     A ++  +M   G+ P   TY+  + A  S    R+ +    
Sbjct: 159 RSSYNNLINACGSSGQWFKALEICKRMTDNGVGPDLMTYNIILSAFKSGGQPRHAVAYYD 218

Query: 353 IMQQNNLKPQDSTIATLSVEC-SKALELDLAEALLDQISRCTNPKP----FSAFL---AA 404
            +    + P D     + + C +K    + A  L  ++ +    +P    F+A L   A 
Sbjct: 219 HLISKKV-PLDRYSHNIILNCLTKLGRFEDAINLFKEMRKMNGCEPDVVTFNALLHVYAL 277

Query: 405 CDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAI 464
           C  + K +    +   + + + P I T+  L   + +     E   +   +  AK     
Sbjct: 278 CGQITKAQETFDMM--IGEGMAPTIVTFNTLLGAYASQGMYTEALQVVGLLVKAK----F 331

Query: 465 EMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVE 521
           E D+         +S  +LL A G  G   +  + F   K     P   T+N ++ +   
Sbjct: 332 EPDV---------VSYSSLLNAFGKAGYPEKAQEVFDLMKQRSRKPNLVTFNGLMDAYAS 382

Query: 522 AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTM- 580
           A +  RA E+   M    I PN  T   +   C+  RC +         VRD F+   + 
Sbjct: 383 AGKYERARELLHDMAEARIEPNVVTICSLFAACARARCPEK--------VRDVFHEAKVR 434

Query: 581 -------TYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVI 633
                   + A I   ++ G FDEA  LL+++  + +  + + +  ++  A   G     
Sbjct: 435 QIALNVPAFNAAITAYIEAGQFDEAKALLEVMEEQNLRPNGVTFLLLINAAGSLGDYREA 494

Query: 634 EFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSA 668
             + ++M    +      C  + + +   G +N A
Sbjct: 495 RTLYDKMVDLGIPLTVEPCSALINAFAKHGMYNEA 529



 Score = 45.4 bits (106), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 67/351 (19%), Positives = 148/351 (42%), Gaps = 28/351 (7%)

Query: 295 SFSDVIHA---CGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVL 351
           +F+ ++H    CG+      A++    M   G+ P+  T++  + A  S       ++V+
Sbjct: 267 TFNALLHVYALCGQITK---AQETFDMMIGEGMAPTIVTFNTLLGAYASQGMYTEALQVV 323

Query: 352 KIMQQNNLKPQDSTIATLSVECSKALELDLAEALLD---QISRCTNPKPFSAFLAACDTM 408
            ++ +   +P   + ++L     KA   + A+ + D   Q SR  N   F+  + A  + 
Sbjct: 324 GLLVKAKFEPDVVSYSSLLNAFGKAGYPEKAQEVFDLMKQRSRKPNLVTFNGLMDAYASA 383

Query: 409 DKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMD 467
            K ERA ++   M + ++ P++ T   LF+       P +  ++F +     ++  I ++
Sbjct: 384 GKYERARELLHDMAEARIEPNVVTICSLFAACARARCPEKVRDVFHEA----KVRQIALN 439

Query: 468 M-ARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESH 526
           + A N    ++I      +A       + L++   +        T+  ++++     +  
Sbjct: 440 VPAFNAAITAYIEAGQFDEA-------KALLEVMEEQNLRPNGVTFLLLINAAGSLGDYR 492

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
            A  ++ +M   GIP      + +I+  +    +  A  +   M + G     +TYT+L 
Sbjct: 493 EARTLYDKMVDLGIPLTVEPCSALINAFAKHGMYNEARTIFDDMRKAGCKANVVTYTSL- 551

Query: 587 KILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTI---LKKACEKGRIDVIE 634
             ++ Y  +D+A    + +   GI  D + + T+   L KA    ++  IE
Sbjct: 552 --MIAYRMYDDAQLACEEMVAAGITPDSIAFGTLFVALNKANRSEKVLQIE 600


>gi|270342070|gb|ACZ74655.1| hypothetical protein [Phaseolus vulgaris]
 gi|270342076|gb|ACZ74661.1| hypothetical protein [Phaseolus vulgaris]
          Length = 485

 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 79/165 (47%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           T+N + H L +  ++ +     ++M+  G  P+  TYN +++     R  + A  L  +M
Sbjct: 111 TFNIMTHVLSKDGDTDKVTGFLEKMEEEGFEPDLVTYNTLVNSYCKKRRLEDAFYLYKIM 170

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
              G  P  +TYT L+  L + G   EA  L   +   GI  D++ YNT++   C  G +
Sbjct: 171 YVRGVMPNLITYTTLMNGLCEEGKVKEAHQLFHQMVHRGIAPDIVSYNTLVCGYCRHGEM 230

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
            +   I+ +M  N++ PD  TC  +  GY   G   SA+  ++ L
Sbjct: 231 QMCRSILYEMIGNRICPDSITCRVIVDGYARDGKLLSALNTVEEL 275



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 76/370 (20%), Positives = 150/370 (40%), Gaps = 16/370 (4%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           ++F+ + H   +  ++      + +M+  G +P   TY+  + +    R L +   + KI
Sbjct: 110 YTFNIMTHVLSKDGDTDKVTGFLEKMEEEGFEPDLVTYNTLVNSYCKKRRLEDAFYLYKI 169

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ-ISRCTNPKPFSAFLAACDTMDKPE 412
           M    + P   T  TL     +  ++  A  L  Q + R   P   S     C      E
Sbjct: 170 MYVRGVMPNLITYTTLMNGLCEEGKVKEAHQLFHQMVHRGIAPDIVSYNTLVCGYCRHGE 229

Query: 413 ----RAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDM 468
               R+I ++  +  ++ PD  T  ++      V+    +G + S +++ + +    M +
Sbjct: 230 MQMCRSI-LYEMIGNRICPDSITCRVI------VDGYARDGKLLSALNTVEELKRFRMKI 282

Query: 469 ARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRA 528
                 +  +++    K   A   +  + +   D  TP    TYN ++ SL E      A
Sbjct: 283 PEEVYDYLVVALCKEGKPFAARSFLHRISE---DGYTP-KMNTYNKLVESLCEFNNEEEA 338

Query: 529 MEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588
           + +   M+   +  NAA Y  +I C   ++    A  L+  ++     P      ALIK 
Sbjct: 339 LILKSDMENKSMKVNAAAYRAVIICLCRVKRTVEAEVLLEEIIGSDMLPDVEISRALIKG 398

Query: 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD 648
             +    D+A++LL L + E   +D   YN ++K  C+ G +  +  + +++ +    P+
Sbjct: 399 YCEENKVDKAVSLLKLFAKEFQVYDTESYNAVVKVFCDVGNVTELMEVEDKLLKVGYVPN 458

Query: 649 PSTCHFVFSG 658
             TC  V  G
Sbjct: 459 KLTCRHVIHG 468



 Score = 48.5 bits (114), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 35/169 (20%), Positives = 73/169 (43%), Gaps = 2/169 (1%)

Query: 490 EGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNI 549
           EG+   L++  C          ++ ++ + V+     +A+E F++     + PN    N 
Sbjct: 22  EGIYENLVR--CTEDCNWNPVIFDMLVKAYVKVGMVEKALETFRRNIETRLIPNVIACNC 79

Query: 550 MIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEG 609
           ++   S          + + M R G      T+  +  +L   GD D+    L+ +  EG
Sbjct: 80  LLSGLSRFNYITQCWEVYAEMGRLGVQRNAYTFNIMTHVLSKDGDTDKVTGFLEKMEEEG 139

Query: 610 IPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
              D++ YNT++   C+K R++   ++ + M+   V P+  T   + +G
Sbjct: 140 FEPDLVTYNTLVNSYCKKRRLEDAFYLYKIMYVRGVMPNLITYTTLMNG 188


>gi|222422989|dbj|BAH19478.1| AT2G06000 [Arabidopsis thaliana]
          Length = 536

 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 83/374 (22%), Positives = 156/374 (41%), Gaps = 23/374 (6%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           W+++ +  +  +     LA Q+   M+S G+ P++    GF+ +  +++G  +    L +
Sbjct: 104 WTYNLLTRSLCKAGLHDLAGQMFECMKSDGVSPNNRLL-GFLVSSFAEKGKLHFATAL-L 161

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDK 410
           +Q   ++     + +L     K   ++ A  L D+  R   C + K F+  +     + K
Sbjct: 162 LQSFEVEGCCMVVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVGK 221

Query: 411 PERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
            E+A+++   M      PDI TY  L   F   N   +   MF  V S    +    D+ 
Sbjct: 222 AEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSG---SVCSPDV- 277

Query: 470 RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLG----TPTYNTVLHSLVEAQES 525
                   ++  +++      G +RE      D    LG      T+N ++    +A E 
Sbjct: 278 --------VTYTSMISGYCKAGKMREASSLL-DDMLRLGIYPTNVTFNVLVDGYAKAGEM 328

Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
             A EI  +M + G  P+  T+  +ID    +        L   M   G +P   TY+ L
Sbjct: 329 LTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSIL 388

Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           I  L +     +A  LL  ++ + I     +YN ++   C+ G+++    I+E+M + K 
Sbjct: 389 INALCNENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKC 448

Query: 646 QPDPSTCHFVFSGY 659
           +PD  T   +  G+
Sbjct: 449 KPDKITFTILIIGH 462


>gi|22325737|ref|NP_671862.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546776|sp|Q84VG6.2|PP160_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g17525, mitochondrial; Flags: Precursor
 gi|330251547|gb|AEC06641.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 626

 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 113/244 (46%), Gaps = 12/244 (4%)

Query: 495 ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDC- 553
           +L+Q    S        YNT+LH+L +  +  RA  +  +MK     PN  T+NI+I   
Sbjct: 203 KLLQIMKTSGVAPNAVVYNTLLHALCKNGKVGRARSLMSEMKE----PNDVTFNILISAY 258

Query: 554 CSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHD 613
           C+  +  +S   L+      GF P  +T T ++++L + G   EAL +L+ V  +G   D
Sbjct: 259 CNEQKLIQSM-VLLEKCFSLGFVPDVVTVTKVMEVLCNEGRVSEALEVLERVESKGGKVD 317

Query: 614 VLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           V+  NT++K  C  G++ V +    +M +    P+  T + + +GY + G  +SA++   
Sbjct: 318 VVACNTLVKGYCALGKMRVAQRFFIEMERKGYLPNVETYNLLIAGYCDVGMLDSALDTFN 377

Query: 674 VLSMRMLCEEVSTLEEKRSDFEDLILAEDSEAESRILQFCEDSNENLAFTAALLQLRWCT 733
            +    +    +T     +    L +   ++   +IL+  +DS+       A +    C 
Sbjct: 378 DMKTDAIRWNFATFN---TLIRGLSIGGRTDDGLKILEMMQDSD---TVHGARIDPYNCV 431

Query: 734 IVGF 737
           I GF
Sbjct: 432 IYGF 435



 Score = 58.9 bits (141), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 89/405 (21%), Positives = 168/405 (41%), Gaps = 75/405 (18%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           ++ ++HA  +    G A  LM +M+    +P+  T++  I A  +++ L   M +L+   
Sbjct: 220 YNTLLHALCKNGKVGRARSLMSEMK----EPNDVTFNILISAYCNEQKLIQSMVLLEKCF 275

Query: 356 QNNLKPQDSTIA-TLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERA 414
                P   T+   + V C+   E  ++EAL  ++      K     + AC+T+ K   A
Sbjct: 276 SLGFVPDVVTVTKVMEVLCN---EGRVSEAL--EVLERVESKGGKVDVVACNTLVKGYCA 330

Query: 415 I-------KIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM 466
           +       + F +M R+   P++ TY LL + + +V      G + S +D+         
Sbjct: 331 LGKMRVAQRFFIEMERKGYLPNVETYNLLIAGYCDV------GMLDSALDTFN------- 377

Query: 467 DMARNNIQHSHISMKNLLKALGAEGMIRE---LIQYFCDSKTPLGT--PTYNTVLHSLVE 521
           DM  + I+ +  +   L++ L   G   +   +++   DS T  G     YN V++   +
Sbjct: 378 DMKTDAIRWNFATFNTLIRGLSIGGRTDDGLKILEMMQDSDTVHGARIDPYNCVIYGFYK 437

Query: 522 AQESHRAMEI---------------FKQMKTC---GIPPNAATYN----------IMIDC 553
                 A+E                FK +  C   G+      Y+          I++  
Sbjct: 438 ENRWEDALEFLLKMEKLFPRAVDRSFKLISLCEKGGMDDLKTAYDQMIGEGGVPSIIVSH 497

Query: 554 CSIIRC-----FKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLV--- 605
           C I R       + +  L++ MV  G+ P++ T+ A+I   + +   D+ +N +  V   
Sbjct: 498 CLIHRYSQHGKIEESLELINDMVTRGYLPRSSTFNAVI---IGFCKQDKVMNGIKFVEDM 554

Query: 606 SLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650
           +  G   D   YN +L++ C KG I     +  +M +  + PDPS
Sbjct: 555 AERGCVPDTESYNPLLEELCVKGDIQKAWLLFSRMVEKSIVPDPS 599



 Score = 47.4 bits (111), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 31/156 (19%), Positives = 64/156 (41%), Gaps = 4/156 (2%)

Query: 506 PLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASA 565
           P     + T++     A+   R + +   +   GI P+   +N ++D         +   
Sbjct: 109 PPDDAIFVTIIRGFGRARLIKRVISVVDLVSKFGIKPSLKVFNSILDVLVKEDIDIAREF 168

Query: 566 LVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKAC 625
               M+  G +    TY  L+K L       +   LL ++   G+  + ++YNT+L   C
Sbjct: 169 FTRKMMASGIHGDVYTYGILMKGLSLTNRIGDGFKLLQIMKTSGVAPNAVVYNTLLHALC 228

Query: 626 EKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVN 661
           + G++     ++ +M     +P+  T + + S Y N
Sbjct: 229 KNGKVGRARSLMSEMK----EPNDVTFNILISAYCN 260



 Score = 45.1 bits (105), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 96/506 (18%), Positives = 191/506 (37%), Gaps = 37/506 (7%)

Query: 199 LLKLAVWQKNLSAVHEI--WEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHM--- 253
           +++L + QK+ S   E   W      +  S  + R         R   + Y+ L  M   
Sbjct: 46  IVRLILDQKSASGALETFRWASTFPGFIHSRSTYRALFHKLCVFRRFDTVYQLLDEMPDS 105

Query: 254 VALAMMGKLYINRTSE-GRLR-----SSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQ 307
           + L     +++      GR R      S +D+       P +KV    F+ ++    +  
Sbjct: 106 IGLPPDDAIFVTIIRGFGRARLIKRVISVVDLVSKFGIKPSLKV----FNSILDVLVKED 161

Query: 308 NSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIA 367
                E    +M + G+    +TY   ++ +     + +G ++L+IM+ + + P      
Sbjct: 162 IDIAREFFTRKMMASGIHGDVYTYGILMKGLSLTNRIGDGFKLLQIMKTSGVAPNAVVYN 221

Query: 368 TLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAA-CDTMDKPERAIKIFAKMRQKLR 426
           TL     K  ++  A +L+ ++    N   F+  ++A C+     +  + +         
Sbjct: 222 TLLHALCKNGKVGRARSLMSEMKE-PNDVTFNILISAYCNEQKLIQSMVLLEKCFSLGFV 280

Query: 427 PDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKA 486
           PD+ T   +  +  N      EG +   ++  +R+ +          +   ++   L+K 
Sbjct: 281 PDVVTVTKVMEVLCN------EGRVSEALEVLERVES-------KGGKVDVVACNTLVKG 327

Query: 487 LGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPN 543
             A G +R   ++F + +     P   TYN ++    +      A++ F  MKT  I  N
Sbjct: 328 YCALGKMRVAQRFFIEMERKGYLPNVETYNLLIAGYCDVGMLDSALDTFNDMKTDAIRWN 387

Query: 544 AATYNIMIDCCSIIRCFKSASALVSMMV-RDGFYPQTM-TYTALIKILLDYGDFDEALNL 601
            AT+N +I   SI         ++ MM   D  +   +  Y  +I        +++AL  
Sbjct: 388 FATFNTLIRGLSIGGRTDDGLKILEMMQDSDTVHGARIDPYNCVIYGFYKENRWEDALEF 447

Query: 602 LDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVN 661
           L  + +E +    +  +  L   CEKG +D ++   +QM      P     H +   Y  
Sbjct: 448 L--LKMEKLFPRAVDRSFKLISLCEKGGMDDLKTAYDQMIGEGGVPSIIVSHCLIHRYSQ 505

Query: 662 CGFHNSAMEALQVLSMRMLCEEVSTL 687
            G    ++E +  +  R      ST 
Sbjct: 506 HGKIEESLELINDMVTRGYLPRSSTF 531


>gi|115474407|ref|NP_001060800.1| Os08g0107700 [Oryza sativa Japonica Group]
 gi|113622769|dbj|BAF22714.1| Os08g0107700, partial [Oryza sativa Japonica Group]
          Length = 374

 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 125/289 (43%), Gaps = 36/289 (12%)

Query: 411 PERAIKIFAKM----RQKLRPDIRTY-------------ELLFSLFGNV--NAPYEEGNM 451
           P  AI +F +M    R K+ P++ TY             +L F+  G V  +    E   
Sbjct: 69  PAVAISLFRRMVMVARPKVPPNLITYSVVIDCCSRVGHLDLAFAALGRVIRSGWTAEAIT 128

Query: 452 FSQVDSA---KRINAIEMDMA---------RNNIQHSHISMKNLLKALGAEGMIRELIQY 499
           FS +  A   K+  +  MD+A           N+    I +K L     ++  +  L   
Sbjct: 129 FSPLLKALCDKKRTSEAMDIALRRMPVLGCTPNVFSYTILLKGLCDENRSQQALHLLHTM 188

Query: 500 FCDSKTPLGTP----TYNTVLHSLV-EAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCC 554
                T  G P    +YNTV++ L+ E ++   A  +F QM   G+ P+  TYN +I   
Sbjct: 189 MVADDTRGGYPPDVVSYNTVINGLLREGRQLDTAYHLFDQMLDQGLSPDVVTYNSIISAL 248

Query: 555 SIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDV 614
           S  R    A+ ++  MV++G  P  +T+ +L+      G  ++A+ +   +  +G+  DV
Sbjct: 249 SKARAMDKAAVVLVRMVKNGAMPNRITHNSLLHGYCSSGKPNDAIGVFKRMCRDGVEPDV 308

Query: 615 LLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
             YNT++   C+ GR      I + M +   +P+ +T   +  GY   G
Sbjct: 309 FTYNTLMGYLCKNGRSMEARKIFDSMVKRGHKPNSATYGTLLHGYATEG 357



 Score = 67.0 bits (162), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 85/170 (50%), Gaps = 7/170 (4%)

Query: 511 TYNTVLHSLVEAQESHRAMEI-FKQMKTCGIPPNAATYNIMI-DCCSIIRCFKSASALVS 568
           T++ +L +L + + +  AM+I  ++M   G  PN  +Y I++   C   R  ++   L +
Sbjct: 128 TFSPLLKALCDKKRTSEAMDIALRRMPVLGCTPNVFSYTILLKGLCDENRSQQALHLLHT 187

Query: 569 MMV----RDGFYPQTMTYTALIKILLDYG-DFDEALNLLDLVSLEGIPHDVLLYNTILKK 623
           MMV    R G+ P  ++Y  +I  LL  G   D A +L D +  +G+  DV+ YN+I+  
Sbjct: 188 MMVADDTRGGYPPDVVSYNTVINGLLREGRQLDTAYHLFDQMLDQGLSPDVVTYNSIISA 247

Query: 624 ACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
             +   +D    ++ +M +N   P+  T + +  GY + G  N A+   +
Sbjct: 248 LSKARAMDKAAVVLVRMVKNGAMPNRITHNSLLHGYCSSGKPNDAIGVFK 297



 Score = 53.1 bits (126), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 65/283 (22%), Positives = 113/283 (39%), Gaps = 19/283 (6%)

Query: 373 CSKALELDLAEALLDQISR---CTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKL--RP 427
           CS+   LDLA A L ++ R         FS  L A     +   A+ I  +    L   P
Sbjct: 101 CSRVGHLDLAFAALGRVIRSGWTAEAITFSPLLKALCDKKRTSEAMDIALRRMPVLGCTP 160

Query: 428 DIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL 487
           ++ +Y +L     + N   +  ++   +  A        D  R       +S   ++  L
Sbjct: 161 NVFSYTILLKGLCDENRSQQALHLLHTMMVA--------DDTRGGYPPDVVSYNTVINGL 212

Query: 488 GAEGMIRELIQYFCDSKTPLG-TP---TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPN 543
             EG   +   +  D     G +P   TYN+++ +L +A+   +A  +  +M   G  PN
Sbjct: 213 LREGRQLDTAYHLFDQMLDQGLSPDVVTYNSIISALSKARAMDKAAVVLVRMVKNGAMPN 272

Query: 544 AATYNIMIDC-CSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL 602
             T+N ++   CS  +    A  +   M RDG  P   TY  L+  L   G   EA  + 
Sbjct: 273 RITHNSLLHGYCSSGKP-NDAIGVFKRMCRDGVEPDVFTYNTLMGYLCKNGRSMEARKIF 331

Query: 603 DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
           D +   G   +   Y T+L     +G +  +  +++ M +N +
Sbjct: 332 DSMVKRGHKPNSATYGTLLHGYATEGSLVKMHHLLDMMVRNGI 374


>gi|357140125|ref|XP_003571621.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic-like [Brachypodium distachyon]
          Length = 814

 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 77/165 (46%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           T N ++H L E +    A E+ + M   G+  +  TYNIMI  C      + A  L   M
Sbjct: 479 TSNALIHGLCEGKNMKGATEVLRTMVNKGMELDNITYNIMIQGCCKDSKIEEALKLRDDM 538

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           +R GF P    + ++I    D G  +EAL+LL  + +EG+  DV+ Y TI+   C+   I
Sbjct: 539 IRKGFKPDAYMFNSIIHAYCDLGKMEEALHLLGQMKIEGVQPDVVSYGTIIDGYCKAKDI 598

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
                 + ++    ++P+    + +  GY   G  + A+  L  +
Sbjct: 599 QKANEYLNELMACGLKPNAVIYNALIGGYGRNGNISGAIGVLDTM 643



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 104/555 (18%), Positives = 218/555 (39%), Gaps = 54/555 (9%)

Query: 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184
           Y L+M ALCK G ++EA  L   + E   + P +  +   +    +          L  M
Sbjct: 269 YNLLMDALCKSGRVDEAIRLKGRM-EESRVAPSMVTFGILINGLKRSDRFGEVGALLREM 327

Query: 185 DSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-KHYSLSIFSLRKFVWSFTRLRDL 243
           +   +  NEV   EL+     + + +    ++++ + K    +  +      +  +  ++
Sbjct: 328 EGLGITPNEVICNELIDWHCRKGHFTEAIRLFDEMVSKEMKSTAVTYNLIARALCKEGEM 387

Query: 244 KSAYETLQHMVALAM-MGKLYINRTSEGRL-RSSRLDIPIPLNALPVMKVLRWSFSDVIH 301
           + A   L+ M++  M +     N    G L R+ RL+  + L +  V + ++ + + ++ 
Sbjct: 388 ERAERILEEMLSTGMTIHSGLFNSVVAGLLQRTGRLESVVRLISEMVKRGMKPNDA-LMT 446

Query: 302 ACGRTQNSGLAEQ----LMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQN 357
           AC +    G   Q    + L+M   GL  +  T +  I  +   + ++   EVL+ M   
Sbjct: 447 ACTKQLCQGRRHQEAVGIWLKMLEKGLCINIATSNALIHGLCEGKNMKGATEVLRTM--- 503

Query: 358 NLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKI 417
                           +K +ELD        I+       ++  +  C    K E A+K+
Sbjct: 504 ---------------VNKGMELD-------NIT-------YNIMIQGCCKDSKIEEALKL 534

Query: 418 FAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR-NNIQH 475
              M R+  +PD   +  +   + ++    E  ++  Q+    +I  ++ D+     I  
Sbjct: 535 RDDMIRKGFKPDAYMFNSIIHAYCDLGKMEEALHLLGQM----KIEGVQPDVVSYGTIID 590

Query: 476 SHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQM 535
            +   K++ KA      + EL+   C  K       YN ++           A+ +   M
Sbjct: 591 GYCKAKDIQKA---NEYLNELMA--CGLKP--NAVIYNALIGGYGRNGNISGAIGVLDTM 643

Query: 536 KTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDF 595
           ++ GI P   TY  ++           A  +     ++      + YT +I+ L   G  
Sbjct: 644 ESIGIQPTNVTYCSLMHWMCHAGLVDEAKTMFEQSRKNSIEVGVVGYTIMIQGLCKIGKM 703

Query: 596 DEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFV 655
           DEA+N  + +    IP + + Y T++   C+ G  +    + ++M  + + PD  + + +
Sbjct: 704 DEAMNYFEEMRSRSIPPNKITYTTLMYAYCKSGNNEEASKLFDEMVSSGIVPDNVSYNTL 763

Query: 656 FSGYVNCGFHNSAME 670
            +G+      + A+E
Sbjct: 764 VTGFSQVDSLDKAIE 778



 Score = 64.3 bits (155), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 105/484 (21%), Positives = 191/484 (39%), Gaps = 65/484 (13%)

Query: 108 ETWRMMEE---KEIGLNNKCYLLMMQALCKGGYLEEASNLI-YFLGERYGIYPIL--PVY 161
           E  R+ +E   KE+      Y L+ +ALCK G +E A  ++   L     I+  L   V 
Sbjct: 354 EAIRLFDEMVSKEMKSTAVTYNLIARALCKEGEMERAERILEEMLSTGMTIHSGLFNSVV 413

Query: 162 NSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI- 220
              L    +L S+V     +  M  R +  N+   T   K     +       IW   + 
Sbjct: 414 AGLLQRTGRLESVVRL---ISEMVKRGMKPNDALMTACTKQLCQGRRHQEAVGIWLKMLE 470

Query: 221 KHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAM-MGKLYINRTSEGRLRSSRLDI 279
           K   ++I +    +      +++K A E L+ MV   M +  +  N   +G  + S+++ 
Sbjct: 471 KGLCINIATSNALIHGLCEGKNMKGATEVLRTMVNKGMELDNITYNIMIQGCCKDSKIEE 530

Query: 280 PIPLNALPVMKVLR---WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIR 336
            + L    + K  +   + F+ +IHA         A  L+ QM+  G+QP   +Y   I 
Sbjct: 531 ALKLRDDMIRKGFKPDAYMFNSIIHAYCDLGKMEEALHLLGQMKIEGVQPDVVSYGTIID 590

Query: 337 AIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPK 396
                + ++   E L  +    LKP                   +  AL+    R  N  
Sbjct: 591 GYCKAKDIQKANEYLNELMACGLKPNAV----------------IYNALIGGYGRNGN-- 632

Query: 397 PFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVD 456
             S  +   DTM+    +I I        +P   TY  L     +     E   MF Q  
Sbjct: 633 -ISGAIGVLDTME----SIGI--------QPTNVTYCSLMHWMCHAGLVDEAKTMFEQ-- 677

Query: 457 SAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKT---PLGTPTYN 513
              R N+IE+ +    I         +++ L   G + E + YF + ++   P    TY 
Sbjct: 678 --SRKNSIEVGVVGYTI---------MIQGLCKIGKMDEAMNYFEEMRSRSIPPNKITYT 726

Query: 514 TVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSII----RCFKSASALVSM 569
           T++++  ++  +  A ++F +M + GI P+  +YN ++   S +    +  + A+ + S+
Sbjct: 727 TLMYAYCKSGNNEEASKLFDEMVSSGIVPDNVSYNTLVTGFSQVDSLDKAIEKAAEISSI 786

Query: 570 MVRD 573
           M ++
Sbjct: 787 MTQN 790



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 105/556 (18%), Positives = 212/556 (38%), Gaps = 82/556 (14%)

Query: 183 LMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDY--IKHYSLSIFSLRKFVWSFTRL 240
           ++ SR    +  T   LL+      NL A  +++++    K  + + +S    + +  ++
Sbjct: 183 VLSSRRASPSVKTCNALLEALARTGNLGATCKVFDEMRDCKTVTPNGYSYTSMIKALCKV 242

Query: 241 RDLKSAYETLQHMVALAMM---GKLYINRTSEGRLRSSRLDIPIPLNA-------LPVMK 290
             +   ++ L  ++   +    G +  N   +   +S R+D  I L          P M 
Sbjct: 243 GKVDDGFKILSDLIHAGLQQSAGAVPYNLLMDALCKSGRVDEAIRLKGRMEESRVAPSM- 301

Query: 291 VLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNG--M 348
               +F  +I+   R+   G    L+ +M+ LG+ P+    +  I     D   R G   
Sbjct: 302 ---VTFGILINGLKRSDRFGEVGALLREMEGLGITPNEVICNELI-----DWHCRKGHFT 353

Query: 349 EVLKIMQQNNLKPQDSTIAT---LSVECSKALELDLAEALLDQI--------SRCTNP-- 395
           E +++  +   K   ST  T   ++    K  E++ AE +L+++        S   N   
Sbjct: 354 EAIRLFDEMVSKEMKSTAVTYNLIARALCKEGEMERAERILEEMLSTGMTIHSGLFNSVV 413

Query: 396 -------------------------KPFSAFLAACDTM----DKPERAIKIFAKMRQK-L 425
                                    KP  A + AC        + + A+ I+ KM +K L
Sbjct: 414 AGLLQRTGRLESVVRLISEMVKRGMKPNDALMTACTKQLCQGRRHQEAVGIWLKMLEKGL 473

Query: 426 RPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLK 485
             +I T   L      ++   E  NM       K    +   M    ++  +I+   +++
Sbjct: 474 CINIATSNAL------IHGLCEGKNM-------KGATEVLRTMVNKGMELDNITYNIMIQ 520

Query: 486 ALGAEGMIRELIQYFCDSKTPLGTPT---YNTVLHSLVEAQESHRAMEIFKQMKTCGIPP 542
               +  I E ++   D       P    +N+++H+  +  +   A+ +  QMK  G+ P
Sbjct: 521 GCCKDSKIEEALKLRDDMIRKGFKPDAYMFNSIIHAYCDLGKMEEALHLLGQMKIEGVQP 580

Query: 543 NAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL 602
           +  +Y  +ID     +  + A+  ++ ++  G  P  + Y ALI      G+   A+ +L
Sbjct: 581 DVVSYGTIIDGYCKAKDIQKANEYLNELMACGLKPNAVIYNALIGGYGRNGNISGAIGVL 640

Query: 603 DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNC 662
           D +   GI    + Y +++   C  G +D  + + EQ  +N ++        +  G    
Sbjct: 641 DTMESIGIQPTNVTYCSLMHWMCHAGLVDEAKTMFEQSRKNSIEVGVVGYTIMIQGLCKI 700

Query: 663 GFHNSAMEALQVLSMR 678
           G  + AM   + +  R
Sbjct: 701 GKMDEAMNYFEEMRSR 716



 Score = 43.5 bits (101), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 43/203 (21%), Positives = 88/203 (43%), Gaps = 14/203 (6%)

Query: 509 TPTYNTVLHSLV--EAQESHR-AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASA 565
           TP+ + ++++ V   A+ S R A++ F  + +    P+  T N +++  +      +   
Sbjct: 155 TPSSDLLINTCVTSSARGSLRLAVDAFHVLSSRRASPSVKTCNALLEALARTGNLGATCK 214

Query: 566 LVSMMVRD--GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHD--VLLYNTIL 621
           +   M RD     P   +YT++IK L   G  D+   +L  +   G+      + YN ++
Sbjct: 215 VFDEM-RDCKTVTPNGYSYTSMIKALCKVGKVDDGFKILSDLIHAGLQQSAGAVPYNLLM 273

Query: 622 KKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG------YVNCGFHNSAMEALQVL 675
              C+ GR+D    +  +M +++V P   T   + +G      +   G     ME L + 
Sbjct: 274 DALCKSGRVDEAIRLKGRMEESRVAPSMVTFGILINGLKRSDRFGEVGALLREMEGLGIT 333

Query: 676 SMRMLCEEVSTLEEKRSDFEDLI 698
              ++C E+     ++  F + I
Sbjct: 334 PNEVICNELIDWHCRKGHFTEAI 356


>gi|218200911|gb|EEC83338.1| hypothetical protein OsI_28730 [Oryza sativa Indica Group]
 gi|258644730|dbj|BAI39975.1| putative fertility restorer homologue [Oryza sativa Indica Group]
          Length = 918

 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 113/570 (19%), Positives = 223/570 (39%), Gaps = 96/570 (16%)

Query: 106 VMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNS-F 164
           VM+ +  M  + +  N   Y  ++ ALCK G + +A  ++  + E   + P    Y S  
Sbjct: 199 VMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESE-MSPDTFTYTSMI 257

Query: 165 LGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYS 224
           LG C K H +  A    + M       N VTY+ L+        ++   ++  + I H  
Sbjct: 258 LGHCRK-HDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILH-- 314

Query: 225 LSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMG------KLYINRTSEGRLRSSRLD 278
                             L +A+     ++AL  MG      +L+++  ++G    +   
Sbjct: 315 ----------------GILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKG-CEPNVYT 357

Query: 279 IPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAI 338
               ++ L V  +L+                 +A  L  +M   G+ P++ TY+  I  +
Sbjct: 358 YTALISGLCVSGILK-----------------VAIGLFHRMSRDGVFPNTVTYNALINIL 400

Query: 339 VSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPF 398
           V +R ++    VL +M +N   P   T                                +
Sbjct: 401 VENRRIKYAFVVLNLMGRNGCSPNIVT--------------------------------Y 428

Query: 399 SAFLAACDTMDKPERAIKIFAKMRQKLR-PDIRTYELLFSLFGNVNAPYEEGNMFSQVDS 457
           +  +     +  P++A+ +   M Q+    ++ TY  +   +       + GN      S
Sbjct: 429 NEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGY------CDSGN----TTS 478

Query: 458 AKRINAIEMDMARNNIQHSHISMK----NLLKALGAEGMIRELIQYFCDSKTPLGTPTYN 513
           A RI  +  D      + S+  +      + K   A G+  E++    D   P    TY 
Sbjct: 479 ALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVD---DGLCP-NEVTYT 534

Query: 514 TVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRD 573
            ++    + ++   A  + + MK  G  PN  TYN++I   +    F  A  L  +M+ +
Sbjct: 535 ALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEE 594

Query: 574 GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVI 633
           G +P  +TYTA+I  L   G    AL + + +  +G   ++L Y+++++   ++G+++  
Sbjct: 595 GIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEA 654

Query: 634 EFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
           E +  ++ ++ + PD  T   +   Y+  G
Sbjct: 655 ENLFAELERHGLIPDEITYVKMIEAYIMSG 684



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 97/418 (23%), Positives = 166/418 (39%), Gaps = 57/418 (13%)

Query: 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355
           ++ VI+A  +  N   AE +M ++    + P + TY   I        L + ++V   M 
Sbjct: 218 YNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMA 277

Query: 356 QNNLKPQDSTIATL------SVECSKALELD---LAEALLDQISRCTNPKPFSAFLAACD 406
           +   +P   T +TL      S   ++A +L    +   +L     CT P      +A CD
Sbjct: 278 KEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGP-----IIALCD 332

Query: 407 TMDKPERAIKIFAKMRQK-LRPDIRTYELLFS----------LFGNVNAPYEEGNMFSQV 455
            M   E A ++F  M+ K   P++ TY  L S            G  +    +G   + V
Sbjct: 333 -MGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGILKVAIGLFHRMSRDGVFPNTV 391

Query: 456 DSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMI---RELIQYFCDSKTPLGTP-- 510
                IN +   +    I+++ + + NL+   G    I    E+I+ +C     LG P  
Sbjct: 392 TYNALINIL---VENRRIKYAFVVL-NLMGRNGCSPNIVTYNEMIKGYC----ILGDPKK 443

Query: 511 ------------------TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID 552
                             TYNT++    ++  +  A+ I   M+  G  P+  +Y  +I 
Sbjct: 444 AMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELIC 503

Query: 553 CCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPH 612
               I   +SA  L + MV DG  P  +TYTALI         D A +LL+ +   G   
Sbjct: 504 GFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRP 563

Query: 613 DVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAME 670
           +V  YN ++    ++      E + + M +  + P+  T   +  G    G  + A+E
Sbjct: 564 NVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALE 621



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 90/211 (42%), Gaps = 3/211 (1%)

Query: 468 MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTV---LHSLVEAQE 524
           MA+   + + ++   L+  L   G + E      +       PT +T    + +L +   
Sbjct: 276 MAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGC 335

Query: 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTA 584
              A  +F  MK  G  PN  TY  +I    +    K A  L   M RDG +P T+TY A
Sbjct: 336 YEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGILKVAIGLFHRMSRDGVFPNTVTYNA 395

Query: 585 LIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644
           LI IL++      A  +L+L+   G   +++ YN ++K  C  G       ++  M Q  
Sbjct: 396 LINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRG 455

Query: 645 VQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675
              +  T + +  GY + G   SA+  L ++
Sbjct: 456 HSANLVTYNTIIKGYCDSGNTTSALRILDLM 486


>gi|326510087|dbj|BAJ87260.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326520816|dbj|BAJ92771.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1092

 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 125/616 (20%), Positives = 245/616 (39%), Gaps = 59/616 (9%)

Query: 90  FFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLG 149
           +  +L+ C  S D   V E W  ++      N   Y   + ALC+ G ++EA ++   + 
Sbjct: 314 YITLLDKCGDSGDSRSVSEIWNALKADGYNDNVVSYTAAVDALCQVGRVDEALDVFDEMK 373

Query: 150 ERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMV-GKNEVTYTELLKLAVWQKN 208
           ++ GI P    YNS +    K       N  L+L +   + G     YT +L +    K+
Sbjct: 374 QK-GIIPQQYSYNSLISGFLKADRF---NRALELFNHMNIHGPTPNGYTHVLFINYHGKS 429

Query: 209 LSAVHEIWEDYIKHYSL--------SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMG 260
             ++  +     K Y L         + +    ++   +   L  A      + A+ +  
Sbjct: 430 GESLKAL-----KRYELMKSKGIVPDVVAGNAVLYGLAKTGRLGMAKRVFHELKAMGISP 484

Query: 261 K-----LYINRTSEGRLRSSRLDI---PIPLNALPVMKVLRWSFSDVIHACGRTQNSGLA 312
                 + I   S+       + I    I     P +  +  S  D+++  GR      A
Sbjct: 485 DNITYTMMIKCCSKASNADEAMKIFAEMIENRCAPDVLAMN-SLIDMLYKAGRGNE---A 540

Query: 313 EQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVE 372
            ++  +++ + L+P+  TY+  +  +  +  ++  M++L+ M  N+  P   T  T+   
Sbjct: 541 WKIFYELKEMNLEPTDCTYNTLLAGLGREGKVKEVMQLLEGMNSNSFPPNIITYNTVLDC 600

Query: 373 CSKALELDLAEALLDQIS--RC-TNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDI 429
             K  E++ A  +L  ++   C  +   ++  +      D+ + A  +F +M++ L PD 
Sbjct: 601 LCKNGEVNYALDMLYSMTMNGCMPDLSSYNTVMYGLVKEDRLDEAFWMFCQMKKVLAPDY 660

Query: 430 RTYELLFSLFGNVNAPYEEGNMF--------SQVDSAKRINAIEMDMARNNIQHSHISMK 481
            T   +   F       E  +          S+VD +   + +E  + R+  + S    +
Sbjct: 661 ATVCTILPSFVRSGLMKEALHTVREYILQPDSKVDRSSVHSLMEGILKRDGTEKSIEFAE 720

Query: 482 N------LLKALGAEGMIR------------ELIQYFCDSKTPLGTPTYNTVLHSLVEAQ 523
           N      LL  L    +IR            EL++ F +    L T +YN ++  LV+  
Sbjct: 721 NIASSGLLLDDLFLSPIIRHLCKHKEALAAHELVKKFENLGVSLKTGSYNALICGLVDED 780

Query: 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583
               A E+F +MK  G  P+  TY++++D        +    +   M   G+    +TY 
Sbjct: 781 LIDIAEELFSEMKRLGCDPDEFTYHLILDAMGKSMRIEDMLKIQEEMHNKGYKSTYVTYN 840

Query: 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643
            +I  L+     DEA+NL   +  EG       Y  +L    + G I+  E + ++M + 
Sbjct: 841 TIISGLVKSKMLDEAINLYYQLMSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLEC 900

Query: 644 KVQPDPSTCHFVFSGY 659
             +P+ +  + + +GY
Sbjct: 901 GCEPNCAIYNILLNGY 916



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 85/401 (21%), Positives = 170/401 (42%), Gaps = 22/401 (5%)

Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
           +S++  I   G+      A +++ +M+  G +P   T    I+ +     L +  +V   
Sbjct: 242 YSYTICIRVLGQAGRLEEAYRILRKMEEEGCKPDVVTNTVLIQILCDAGRLADAKDVFWK 301

Query: 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTM---DK 410
           M+ ++ KP   T  TL  +C  + +      + + +          ++ AA D +    +
Sbjct: 302 MKASDQKPDRVTYITLLDKCGDSGDSRSVSEIWNALKADGYNDNVVSYTAAVDALCQVGR 361

Query: 411 PERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVD-SAKRINAIEMDM 468
            + A+ +F +M+QK + P   +Y  L S F   +       +F+ ++      N     +
Sbjct: 362 VDEALDVFDEMKQKGIIPQQYSYNSLISGFLKADRFNRALELFNHMNIHGPTPNGYTHVL 421

Query: 469 ARNNIQHSHISMKNL--LKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESH 526
             N    S  S+K L   + + ++G++ +++               N VL+ L +     
Sbjct: 422 FINYHGKSGESLKALKRYELMKSKGIVPDVV-------------AGNAVLYGLAKTGRLG 468

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
            A  +F ++K  GI P+  TY +MI CCS       A  + + M+ +   P  +   +LI
Sbjct: 469 MAKRVFHELKAMGISPDNITYTMMIKCCSKASNADEAMKIFAEMIENRCAPDVLAMNSLI 528

Query: 587 KILLDYGDFDEALNLL-DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
            +L   G  +EA  +  +L  +   P D   YNT+L     +G++  +  ++E M+ N  
Sbjct: 529 DMLYKAGRGNEAWKIFYELKEMNLEPTDC-TYNTLLAGLGREGKVKEVMQLLEGMNSNSF 587

Query: 646 QPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVST 686
            P+  T + V       G  N A++ L  ++M     ++S+
Sbjct: 588 PPNIITYNTVLDCLCKNGEVNYALDMLYSMTMNGCMPDLSS 628



 Score = 76.3 bits (186), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 83/397 (20%), Positives = 165/397 (41%), Gaps = 25/397 (6%)

Query: 288 VMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNG 347
           ++K    +F  V  A G       A   +  M+  G+  +++TY+G I  +V     R  
Sbjct: 131 IIKANVGTFCTVFGAVGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLIYFLVKSGFDREA 190

Query: 348 MEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI-SRCTNPKPFSAFLA--A 404
           M+V K M  + + P   T + L +   K  + +    LL ++ +R   P  +S  +    
Sbjct: 191 MDVYKAMAADGVVPTVRTYSVLMLAFGKRRDAETVVGLLGEMEARGVRPNVYSYTICIRV 250

Query: 405 CDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSA----K 459
                + E A +I  KM ++  +PD+ T  +L  +  +     +  ++F ++ ++     
Sbjct: 251 LGQAGRLEEAYRILRKMEEEGCKPDVVTNTVLIQILCDAGRLADAKDVFWKMKASDQKPD 310

Query: 460 RINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSL 519
           R+  I + + +        S+  +  AL A+G    ++             +Y   + +L
Sbjct: 311 RVTYITL-LDKCGDSGDSRSVSEIWNALKADGYNDNVV-------------SYTAAVDAL 356

Query: 520 VEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQT 579
            +      A+++F +MK  GI P   +YN +I        F  A  L + M   G  P  
Sbjct: 357 CQVGRVDEALDVFDEMKQKGIIPQQYSYNSLISGFLKADRFNRALELFNHMNIHGPTPNG 416

Query: 580 MTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQ 639
            T+   I      G+  +AL   +L+  +GI  DV+  N +L    + GR+ + + +  +
Sbjct: 417 YTHVLFINYHGKSGESLKALKRYELMKSKGIVPDVVAGNAVLYGLAKTGRLGMAKRVFHE 476

Query: 640 MHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLS 676
           +    + PD  T   +      C   ++A EA+++ +
Sbjct: 477 LKAMGISPDNITYTMMIK---CCSKASNADEAMKIFA 510



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 78/375 (20%), Positives = 150/375 (40%), Gaps = 34/375 (9%)

Query: 290  KVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSH----TYDGFIRAIVSDRGLR 345
            KVL   ++ V         SGL ++ +  ++   LQP S     +    +  I+   G  
Sbjct: 654  KVLAPDYATVCTILPSFVRSGLMKEALHTVREYILQPDSKVDRSSVHSLMEGILKRDGTE 713

Query: 346  NGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALL---DQISRCTNPKPFSAFL 402
              +E  + +  + L   D  ++ +     K  E   A  L+   + +        ++A +
Sbjct: 714  KSIEFAENIASSGLLLDDLFLSPIIRHLCKHKEALAAHELVKKFENLGVSLKTGSYNALI 773

Query: 403  AACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI 461
                  D  + A ++F++M++    PD  TY L+    G                 + RI
Sbjct: 774  CGLVDEDLIDIAEELFSEMKRLGCDPDEFTYHLILDAMG----------------KSMRI 817

Query: 462  N---AIEMDMARNNIQHSHISMKNLLKALGAEGMIRELI----QYFCDSKTPLGTP-TYN 513
                 I+ +M     + ++++   ++  L    M+ E I    Q   +  +P  TP TY 
Sbjct: 818  EDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMSEGFSP--TPCTYG 875

Query: 514  TVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRD 573
             +L  L++      A  +F +M  CG  PN A YNI+++   I    +    L   MV  
Sbjct: 876  PLLDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTEKVCELFESMVEQ 935

Query: 574  GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVI 633
            G  P   +YT +I  L   G  ++ L+    ++  G+  D++ YN ++    + GR++  
Sbjct: 936  GMNPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDLITYNLLIHGLGKSGRLEEA 995

Query: 634  EFIIEQMHQNKVQPD 648
              +   M +  + P+
Sbjct: 996  LSLYNDMEKKGIAPN 1010



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 114/576 (19%), Positives = 232/576 (40%), Gaps = 66/576 (11%)

Query: 112 MMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKL 171
           +M+E  I LN   Y  ++  L K G+  EA + +Y      G+ P +  Y+  + A  K 
Sbjct: 161 VMKEAGIVLNAYTYNGLIYFLVKSGFDREAMD-VYKAMAADGVVPTVRTYSVLMLAFGKR 219

Query: 172 HSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIW----EDYIKHYSLSI 227
                    L  M++R V  N  +YT  +++      L   + I     E+  K   ++ 
Sbjct: 220 RDAETVVGLLGEMEARGVRPNVYSYTICIRVLGQAGRLEEAYRILRKMEEEGCKPDVVTN 279

Query: 228 FSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALP 287
             L + +    RL D K  +                       ++++S            
Sbjct: 280 TVLIQILCDAGRLADAKDVF----------------------WKMKASD----------- 306

Query: 288 VMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNG 347
             K  R ++  ++  CG + +S    ++   +++ G   +  +Y   + A+     +   
Sbjct: 307 -QKPDRVTYITLLDKCGDSGDSRSVSEIWNALKADGYNDNVVSYTAAVDALCQVGRVDEA 365

Query: 348 MEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFS----AFLA 403
           ++V   M+Q  + PQ  +  +L     KA   + A  L + ++    P P       F+ 
Sbjct: 366 LDVFDEMKQKGIIPQQYSYNSLISGFLKADRFNRALELFNHMN-IHGPTPNGYTHVLFIN 424

Query: 404 ACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI- 461
                 +  +A+K +  M+ K + PD+     +  L+G             ++  AKR+ 
Sbjct: 425 YHGKSGESLKALKRYELMKSKGIVPDVVAGNAV--LYGLAKT--------GRLGMAKRVF 474

Query: 462 -NAIEMDMARNNIQHSHISMKNLLKALGAEGMIR---ELIQYFCDSKTPLGTPTYNTVLH 517
                M ++ +NI ++ + +K   KA  A+  ++   E+I+  C           N+++ 
Sbjct: 475 HELKAMGISPDNITYTMM-IKCCSKASNADEAMKIFAEMIENRCAPDVL----AMNSLID 529

Query: 518 SLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYP 577
            L +A   + A +IF ++K   + P   TYN ++         K    L+  M  + F P
Sbjct: 530 MLYKAGRGNEAWKIFYELKEMNLEPTDCTYNTLLAGLGREGKVKEVMQLLEGMNSNSFPP 589

Query: 578 QTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFII 637
             +TY  ++  L   G+ + AL++L  +++ G   D+  YNT++    ++ R+D   ++ 
Sbjct: 590 NIITYNTVLDCLCKNGEVNYALDMLYSMTMNGCMPDLSSYNTVMYGLVKEDRLDEAFWMF 649

Query: 638 EQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
            QM +  + PD +T   +   +V  G    A+  ++
Sbjct: 650 CQM-KKVLAPDYATVCTILPSFVRSGLMKEALHTVR 684



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 64/304 (21%), Positives = 131/304 (43%), Gaps = 20/304 (6%)

Query: 294  WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
            +++  ++ A G++       ++  +M + G + +  TY+  I  +V  + L   + +   
Sbjct: 802  FTYHLILDAMGKSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQ 861

Query: 354  MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRC---TNPKPFSAFLAACDTMDK 410
            +      P   T   L     K   ++ AEAL D++  C    N   ++  L        
Sbjct: 862  LMSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGD 921

Query: 411  PERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
             E+  ++F  M  Q + PDI++Y ++      ++    +G +   +   K++     DM 
Sbjct: 922  TEKVCELFESMVEQGMNPDIKSYTVV------IDTLCADGRLNDGLSYFKQLT----DMG 971

Query: 470  RNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVLHSLVEAQESH 526
               ++   I+   L+  LG  G + E +  + D +     P   TYN+++  L +A ++ 
Sbjct: 972  ---LEPDLITYNLLIHGLGKSGRLEEALSLYNDMEKKGIAPNLYTYNSLILYLGKAGKAA 1028

Query: 527  RAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALI 586
             A ++++++   G  PN  TYN +I   S+    ++A A    M+  G  P + TY  L 
Sbjct: 1029 EAGKMYEELLAKGWKPNVFTYNALIRGYSVSGSPENAFAAYGRMIVGGCRPNSSTYMQLP 1088

Query: 587  KILL 590
              +L
Sbjct: 1089 NQML 1092



 Score = 56.2 bits (134), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 82/183 (44%), Gaps = 4/183 (2%)

Query: 489  AEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYN 548
            AE +  E+++  C+    +    YN +L+    A ++ +  E+F+ M   G+ P+  +Y 
Sbjct: 890  AEALFDEMLECGCEPNCAI----YNILLNGYRIAGDTEKVCELFESMVEQGMNPDIKSYT 945

Query: 549  IMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLE 608
            ++ID            +    +   G  P  +TY  LI  L   G  +EAL+L + +  +
Sbjct: 946  VVIDTLCADGRLNDGLSYFKQLTDMGLEPDLITYNLLIHGLGKSGRLEEALSLYNDMEKK 1005

Query: 609  GIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSA 668
            GI  ++  YN+++    + G+      + E++     +P+  T + +  GY   G   +A
Sbjct: 1006 GIAPNLYTYNSLILYLGKAGKAAEAGKMYEELLAKGWKPNVFTYNALIRGYSVSGSPENA 1065

Query: 669  MEA 671
              A
Sbjct: 1066 FAA 1068



 Score = 56.2 bits (134), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 68/153 (44%)

Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMM 570
           TYNT++  LV+++    A+ ++ Q+ + G  P   TY  ++D        + A AL   M
Sbjct: 838 TYNTIISGLVKSKMLDEAINLYYQLMSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEM 897

Query: 571 VRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRI 630
           +  G  P    Y  L+      GD ++   L + +  +G+  D+  Y  ++   C  GR+
Sbjct: 898 LECGCEPNCAIYNILLNGYRIAGDTEKVCELFESMVEQGMNPDIKSYTVVIDTLCADGRL 957

Query: 631 DVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCG 663
           +      +Q+    ++PD  T + +  G    G
Sbjct: 958 NDGLSYFKQLTDMGLEPDLITYNLLIHGLGKSG 990


>gi|449504220|ref|XP_004162287.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79080,
           chloroplastic-like [Cucumis sativus]
          Length = 566

 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 93/426 (21%), Positives = 176/426 (41%), Gaps = 57/426 (13%)

Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
           S++ ++ +  R  N G A QL+ +M+  G   ++ TY+  +R +     L   +++L  +
Sbjct: 134 SYTFLVSSLCRKGNVGYAMQLVDKMEEYGYPTNTATYNSLVRGLCMHGNLTQSLQLLDRL 193

Query: 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQI-SRCTNPK--PFSAFLAACDTMDKP 411
            Q  L P   T + L     K    D A  LLD+I ++   P    ++  L       + 
Sbjct: 194 IQKGLVPNAYTYSFLLEAAYKERGADEASKLLDEIIAKGGKPNLVSYNVLLTGLCKEGRT 253

Query: 412 ERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGN-MFSQVDSAKRINAIEMDMA 469
           E A+++F ++  K   P++ +Y +L     N    +EE N + +++D  +R         
Sbjct: 254 EDAMQLFRELPSKGFSPNVVSYNILLRSLCN-EGRWEEANVLLAEMDGDER--------- 303

Query: 470 RNNIQHSHISMKNLLKALGAEGMIR---ELIQYFCDSKTPLGTPTYNTVLHSLVEAQESH 526
                 S ++   L+ +L   G      E+++    ++      +YN ++  L + ++  
Sbjct: 304 ----SPSTVTYNILIGSLTLHGRTEHALEVLEEMIRARFKPTASSYNPIIARLCKDRKVD 359

Query: 527 RAMEIFKQMKTCGIPPNAATYNIMIDCC---------SIIR------------------- 558
             ++   QM      PN  TYN +   C         SII+                   
Sbjct: 360 LVVKCLDQMMYRHCNPNEGTYNAIATLCEEGMVQEAFSIIQSLGNKQHFSTQEFYKIVIT 419

Query: 559 --CFKS----ASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPH 612
             C K     A  L+  M + GF P + TY++LI+ L   G  +EA+ +  ++  E I  
Sbjct: 420 SLCRKGNTYPAFQLLYEMTKYGFTPDSFTYSSLIRGLCMEGMLNEAIEIFSVME-ENIKL 478

Query: 613 DVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEAL 672
           D   YN+++   C+  R D+   + E M       + +T   +  G ++    + A E L
Sbjct: 479 DTENYNSLILGCCKSRRTDLALDVFEIMVGKGYLANETTYTILVEGIIHEKEMDLATEVL 538

Query: 673 QVLSMR 678
           + L +R
Sbjct: 539 RELQLR 544



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 99/218 (45%), Gaps = 4/218 (1%)

Query: 459 KRINAIEMDMARNNIQHSHISMKNLLKAL---GAEGMIRELIQYFCDSKTPLGTPTYNTV 515
           K I  +EM M  + I     S   L+ +L   G  G   +L+    +   P  T TYN++
Sbjct: 115 KAIKVMEM-MIGSGIIPDAASYTFLVSSLCRKGNVGYAMQLVDKMEEYGYPTNTATYNSL 173

Query: 516 LHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGF 575
           +  L       +++++  ++   G+ PNA TY+ +++     R    AS L+  ++  G 
Sbjct: 174 VRGLCMHGNLTQSLQLLDRLIQKGLVPNAYTYSFLLEAAYKERGADEASKLLDEIIAKGG 233

Query: 576 YPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEF 635
            P  ++Y  L+  L   G  ++A+ L   +  +G   +V+ YN +L+  C +GR +    
Sbjct: 234 KPNLVSYNVLLTGLCKEGRTEDAMQLFRELPSKGFSPNVVSYNILLRSLCNEGRWEEANV 293

Query: 636 IIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
           ++ +M  ++  P   T + +       G    A+E L+
Sbjct: 294 LLAEMDGDERSPSTVTYNILIGSLTLHGRTEHALEVLE 331



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/195 (22%), Positives = 91/195 (46%), Gaps = 8/195 (4%)

Query: 515 VLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDG 574
           +L+ L +  +  +A+++ + M   GI P+AA+Y  ++           A  LV  M   G
Sbjct: 103 LLYDLCKTCKMRKAIKVMEMMIGSGIIPDAASYTFLVSSLCRKGNVGYAMQLVDKMEEYG 162

Query: 575 FYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIE 634
           +   T TY +L++ L  +G+  ++L LLD +  +G+  +   Y+ +L+ A ++   D   
Sbjct: 163 YPTNTATYNSLVRGLCMHGNLTQSLQLLDRLIQKGLVPNAYTYSFLLEAAYKERGADEAS 222

Query: 635 FIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEV--------ST 686
            +++++     +P+  + + + +G    G    AM+  + L  +     V        S 
Sbjct: 223 KLLDEIIAKGGKPNLVSYNVLLTGLCKEGRTEDAMQLFRELPSKGFSPNVVSYNILLRSL 282

Query: 687 LEEKRSDFEDLILAE 701
             E R +  +++LAE
Sbjct: 283 CNEGRWEEANVLLAE 297



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 95/489 (19%), Positives = 192/489 (39%), Gaps = 54/489 (11%)

Query: 100 SP-DPLFVMETWRM----MEEKEIGLNNKCYLL-----------------MMQALCKGGY 137
           SP D +F +  W++     + KE+ LN+  + L                 ++  LCK   
Sbjct: 53  SPKDTIFTLPNWKIGKLDQKSKELRLNDAFFHLEFMVEKGQKPDVFQATQLLYDLCKTCK 112

Query: 138 LEEASNLI-YFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTY 196
           + +A  ++   +G   GI P    Y   + +  +  ++ +A   +D M+      N  TY
Sbjct: 113 MRKAIKVMEMMIGS--GIIPDAASYTFLVSSLCRKGNVGYAMQLVDKMEEYGYPTNTATY 170

Query: 197 TELLKLAVWQKNLSAVHEIWEDYI-KHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255
             L++      NL+   ++ +  I K    + ++    + +  + R    A + L  ++A
Sbjct: 171 NSLVRGLCMHGNLTQSLQLLDRLIQKGLVPNAYTYSFLLEAAYKERGADEASKLLDEIIA 230

Query: 256 ------LAMMGKLYINRTSEGRLRSS-RLDIPIPLNALPVMKVLRWSFSDVIHACGRTQN 308
                 L     L      EGR   + +L   +P        V   S++ ++ +      
Sbjct: 231 KGGKPNLVSYNVLLTGLCKEGRTEDAMQLFRELPSKGFSPNVV---SYNILLRSLCNEGR 287

Query: 309 SGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIAT 368
              A  L+ +M      PS+ TY+  I ++       + +EVL+ M +   KP  S+   
Sbjct: 288 WEEANVLLAEMDGDERSPSTVTYNILIGSLTLHGRTEHALEVLEEMIRARFKPTASSYNP 347

Query: 369 LSVECSKALELDLAEALLDQ-ISRCTNPK--PFSAFLAACDTMDKPERAIKIFAKMRQKL 425
           +     K  ++DL    LDQ + R  NP    ++A    C+     + A  I   +  K 
Sbjct: 348 IIARLCKDRKVDLVVKCLDQMMYRHCNPNEGTYNAIATLCEE-GMVQEAFSIIQSLGNKQ 406

Query: 426 RPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLK 485
               + +  +      + +   +GN +           +  +M +        +  +L++
Sbjct: 407 HFSTQEFYKIV-----ITSLCRKGNTYPAFQ-------LLYEMTKYGFTPDSFTYSSLIR 454

Query: 486 ALGAEGMIRELIQYFC--DSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPN 543
            L  EGM+ E I+ F   +    L T  YN+++    +++ +  A+++F+ M   G   N
Sbjct: 455 GLCMEGMLNEAIEIFSVMEENIKLDTENYNSLILGCCKSRRTDLALDVFEIMVGKGYLAN 514

Query: 544 AATYNIMID 552
             TY I+++
Sbjct: 515 ETTYTILVE 523



 Score = 47.8 bits (112), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 64/304 (21%), Positives = 127/304 (41%), Gaps = 21/304 (6%)

Query: 344 LRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRC---TNPKPFSA 400
           +R  ++V+++M  + + P  ++   L     +   +  A  L+D++      TN   +++
Sbjct: 113 MRKAIKVMEMMIGSGIIPDAASYTFLVSSLCRKGNVGYAMQLVDKMEEYGYPTNTATYNS 172

Query: 401 FLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAK 459
            +          +++++  ++ QK L P+  TY  L      + A Y+E       +++K
Sbjct: 173 LVRGLCMHGNLTQSLQLLDRLIQKGLVPNAYTYSFL------LEAAYKER---GADEASK 223

Query: 460 RINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP---TYNTVL 516
            ++ I     + N+    +S   LL  L  EG   + +Q F +  +   +P   +YN +L
Sbjct: 224 LLDEIIAKGGKPNL----VSYNVLLTGLCKEGRTEDAMQLFRELPSKGFSPNVVSYNILL 279

Query: 517 HSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFY 576
            SL        A  +  +M      P+  TYNI+I   ++    + A  ++  M+R  F 
Sbjct: 280 RSLCNEGRWEEANVLLAEMDGDERSPSTVTYNILIGSLTLHGRTEHALEVLEEMIRARFK 339

Query: 577 PQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFI 636
           P   +Y  +I  L      D  +  LD +       +   YN I    CE+G +     I
Sbjct: 340 PTASSYNPIIARLCKDRKVDLVVKCLDQMMYRHCNPNEGTYNAI-ATLCEEGMVQEAFSI 398

Query: 637 IEQM 640
           I+ +
Sbjct: 399 IQSL 402



 Score = 42.7 bits (99), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 66/288 (22%), Positives = 117/288 (40%), Gaps = 26/288 (9%)

Query: 375 KALELDLAEALLD---QISRCTNPKPFSA---FLAACDTMDKPERAIKIFAKM-RQKLRP 427
           K+ EL L +A       + +   P  F A       C T  K  +AIK+   M    + P
Sbjct: 72  KSKELRLNDAFFHLEFMVEKGQKPDVFQATQLLYDLCKTC-KMRKAIKVMEMMIGSGIIP 130

Query: 428 DIRTYELLFSLF---GNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLL 484
           D  +Y  L S     GNV      G     VD  +           N++        NL 
Sbjct: 131 DAASYTFLVSSLCRKGNV------GYAMQLVDKMEEYGYPTNTATYNSLVRGLCMHGNLT 184

Query: 485 KALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNA 544
           ++L    ++  LIQ       P    TY+ +L +  + + +  A ++  ++   G  PN 
Sbjct: 185 QSLQ---LLDRLIQ---KGLVP-NAYTYSFLLEAAYKERGADEASKLLDEIIAKGGKPNL 237

Query: 545 ATYNIMI-DCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLD 603
            +YN+++   C   R  + A  L   +   GF P  ++Y  L++ L + G ++EA  LL 
Sbjct: 238 VSYNVLLTGLCKEGRT-EDAMQLFRELPSKGFSPNVVSYNILLRSLCNEGRWEEANVLLA 296

Query: 604 LVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
            +  +      + YN ++      GR +    ++E+M + + +P  S+
Sbjct: 297 EMDGDERSPSTVTYNILIGSLTLHGRTEHALEVLEEMIRARFKPTASS 344


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.322    0.135    0.399 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,069,529,848
Number of Sequences: 23463169
Number of extensions: 438443505
Number of successful extensions: 1124705
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 4840
Number of HSP's successfully gapped in prelim test: 3269
Number of HSP's that attempted gapping in prelim test: 1022826
Number of HSP's gapped (non-prelim): 59111
length of query: 764
length of database: 8,064,228,071
effective HSP length: 151
effective length of query: 613
effective length of database: 8,816,256,848
effective search space: 5404365447824
effective search space used: 5404365447824
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 81 (35.8 bits)